Query 042534
Match_columns 447
No_of_seqs 282 out of 1382
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 12:09:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042534.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042534hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2hig_A 6-phospho-1-fructokinas 100.0 4E-111 1E-115 881.0 38.7 414 12-443 36-455 (487)
2 1zxx_A 6-phosphofructokinase; 100.0 1.8E-91 6.2E-96 701.9 34.4 308 80-433 1-314 (319)
3 1pfk_A Phosphofructokinase; tr 100.0 3.1E-91 1.1E-95 700.5 34.6 309 80-434 2-317 (320)
4 3hno_A Pyrophosphate-dependent 100.0 1.2E-91 3.9E-96 726.1 31.9 334 79-429 2-367 (419)
5 4a3s_A 6-phosphofructokinase; 100.0 2.4E-90 8.4E-95 695.2 34.3 311 80-436 1-317 (319)
6 2f48_A Diphosphate--fructose-6 100.0 1.3E-87 4.4E-92 715.7 36.0 379 52-437 47-516 (555)
7 3o8l_A 6-phosphofructokinase, 100.0 5.1E-85 1.7E-89 714.4 27.0 336 79-442 14-377 (762)
8 3o8l_A 6-phosphofructokinase, 100.0 3E-82 1E-86 692.5 33.3 329 79-438 399-748 (762)
9 3o8o_B 6-phosphofructokinase s 100.0 1.5E-81 5E-86 687.5 32.0 331 80-438 3-363 (766)
10 3o8o_A 6-phosphofructokinase s 100.0 7E-82 2.4E-86 689.9 28.4 331 79-438 4-363 (787)
11 3opy_A 6-phosphofructo-1-kinas 100.0 3.7E-81 1.3E-85 689.5 30.1 331 79-438 209-568 (989)
12 3opy_B 6-phosphofructo-1-kinas 100.0 4.8E-81 1.6E-85 690.4 30.2 320 79-426 180-527 (941)
13 3o8o_A 6-phosphofructokinase s 100.0 4.7E-80 1.6E-84 675.4 33.2 325 80-438 393-765 (787)
14 3opy_B 6-phosphofructo-1-kinas 100.0 5.1E-80 1.8E-84 682.2 32.2 329 79-438 570-931 (941)
15 3o8o_B 6-phosphofructokinase s 100.0 4.1E-80 1.4E-84 676.0 30.8 325 80-438 393-755 (766)
16 3opy_A 6-phosphofructo-1-kinas 100.0 1.1E-78 3.6E-83 670.0 31.7 329 79-438 597-976 (989)
17 2an1_A Putative kinase; struct 95.8 0.0083 2.8E-07 58.4 5.0 90 80-207 5-94 (292)
18 3g1w_A Sugar ABC transporter; 94.8 1.1 3.7E-05 42.2 16.4 174 79-301 3-185 (305)
19 2i2c_A Probable inorganic poly 93.3 0.035 1.2E-06 53.7 2.6 46 160-208 17-69 (272)
20 1z0s_A Probable inorganic poly 93.1 0.025 8.4E-07 55.4 1.2 64 160-239 42-122 (278)
21 3gbv_A Putative LACI-family tr 89.2 7.7 0.00026 35.9 14.3 182 79-309 7-208 (304)
22 3l49_A ABC sugar (ribose) tran 88.0 8.8 0.0003 35.4 13.7 129 79-252 4-132 (291)
23 3m9w_A D-xylose-binding peripl 87.3 19 0.00065 33.7 16.1 171 80-300 2-184 (313)
24 3k4h_A Putative transcriptiona 87.1 15 0.00053 33.7 14.9 123 79-253 7-139 (292)
25 3e3m_A Transcriptional regulat 84.0 31 0.0011 33.1 16.8 166 81-300 71-247 (355)
26 3kjx_A Transcriptional regulat 82.6 34 0.0012 32.6 16.2 123 80-253 68-193 (344)
27 3dbi_A Sugar-binding transcrip 82.3 24 0.00081 33.5 14.1 124 80-252 61-188 (338)
28 1u0t_A Inorganic polyphosphate 82.0 0.57 2E-05 45.8 2.3 34 169-207 73-106 (307)
29 3pfn_A NAD kinase; structural 80.1 0.89 3E-05 46.0 3.0 126 72-238 30-162 (365)
30 3brq_A HTH-type transcriptiona 79.1 38 0.0013 30.9 15.1 123 80-253 19-147 (296)
31 3kke_A LACI family transcripti 78.0 44 0.0015 31.0 14.6 133 80-264 15-157 (303)
32 3h5o_A Transcriptional regulat 77.9 48 0.0016 31.4 17.3 168 80-300 62-236 (339)
33 3egc_A Putative ribose operon 76.7 23 0.00077 32.7 11.6 125 79-252 7-132 (291)
34 2qv7_A Diacylglycerol kinase D 76.2 1.5 5.1E-05 43.2 3.3 51 162-215 71-121 (337)
35 1yt5_A Inorganic polyphosphate 76.0 0.62 2.1E-05 44.4 0.4 32 170-207 40-71 (258)
36 3afo_A NADH kinase POS5; alpha 75.2 0.71 2.4E-05 47.0 0.6 54 170-238 113-169 (388)
37 2bon_A Lipid kinase; DAG kinas 75.2 2.6 8.9E-05 41.4 4.7 51 162-215 73-125 (332)
38 3qk7_A Transcriptional regulat 75.0 52 0.0018 30.4 15.7 135 80-264 6-152 (294)
39 1dbq_A Purine repressor; trans 74.7 51 0.0017 30.0 14.9 123 80-252 7-133 (289)
40 3s4y_A Thiamin pyrophosphokina 73.8 12 0.00041 35.5 8.8 103 71-183 11-134 (247)
41 2fep_A Catabolite control prot 73.1 57 0.002 30.0 15.2 123 80-253 16-141 (289)
42 1jq5_A Glycerol dehydrogenase; 73.1 4.3 0.00015 40.4 5.8 46 159-209 74-119 (370)
43 3ksm_A ABC-type sugar transpor 73.1 53 0.0018 29.5 16.9 170 81-301 1-185 (276)
44 3d8u_A PURR transcriptional re 72.6 55 0.0019 29.5 16.4 125 80-253 3-128 (275)
45 3uug_A Multiple sugar-binding 72.4 63 0.0022 30.1 13.9 102 79-224 2-107 (330)
46 2dri_A D-ribose-binding protei 71.7 59 0.002 29.5 14.3 139 81-265 2-150 (271)
47 3rot_A ABC sugar transporter, 71.6 35 0.0012 31.6 11.5 92 79-207 2-93 (297)
48 2vk2_A YTFQ, ABC transporter p 71.4 64 0.0022 29.8 13.5 87 80-207 2-90 (306)
49 3o74_A Fructose transport syst 71.3 58 0.002 29.3 17.2 167 80-300 2-176 (272)
50 3e61_A Putative transcriptiona 69.6 65 0.0022 29.1 13.7 121 80-252 8-129 (277)
51 2rgy_A Transcriptional regulat 69.5 69 0.0024 29.4 16.9 123 80-253 8-136 (290)
52 3bil_A Probable LACI-family tr 68.8 82 0.0028 30.0 16.5 166 80-301 66-241 (348)
53 3s40_A Diacylglycerol kinase; 66.7 2.9 0.0001 40.5 2.9 52 160-215 53-104 (304)
54 3o1i_D Periplasmic protein TOR 66.2 31 0.0011 31.7 9.9 70 79-183 4-75 (304)
55 3clk_A Transcription regulator 66.0 69 0.0024 29.3 12.3 123 80-252 8-132 (290)
56 3k9c_A Transcriptional regulat 65.8 82 0.0028 28.9 13.8 133 80-264 12-151 (289)
57 3iv7_A Alcohol dehydrogenase I 65.0 6 0.0002 39.6 4.8 49 159-213 76-124 (364)
58 3l6u_A ABC-type sugar transpor 64.4 84 0.0029 28.6 17.1 90 79-207 7-96 (293)
59 3uhj_A Probable glycerol dehyd 63.9 7.2 0.00025 39.4 5.2 47 159-210 94-140 (387)
60 1oj7_A Hypothetical oxidoreduc 63.6 5.1 0.00017 40.5 4.0 52 159-210 94-161 (408)
61 3hl0_A Maleylacetate reductase 63.5 8.2 0.00028 38.4 5.5 49 159-213 75-123 (353)
62 3huu_A Transcription regulator 63.2 68 0.0023 29.6 11.8 133 80-264 22-170 (305)
63 3tb6_A Arabinose metabolism tr 62.9 90 0.0031 28.3 14.7 128 81-253 16-145 (298)
64 3jzd_A Iron-containing alcohol 62.8 6.5 0.00022 39.2 4.6 47 159-210 77-123 (358)
65 3ox4_A Alcohol dehydrogenase 2 61.8 8.2 0.00028 38.8 5.2 56 159-214 76-144 (383)
66 3gv0_A Transcriptional regulat 61.5 97 0.0033 28.3 15.3 122 80-252 8-134 (288)
67 3lkb_A Probable branched-chain 60.1 36 0.0012 32.8 9.5 107 92-208 123-232 (392)
68 1rrm_A Lactaldehyde reductase; 60.0 8.7 0.0003 38.4 5.0 55 159-213 76-145 (386)
69 2g0t_A Conserved hypothetical 59.1 66 0.0023 32.0 11.2 180 78-277 90-279 (350)
70 3bfj_A 1,3-propanediol oxidore 56.8 12 0.0004 37.4 5.3 54 159-212 80-146 (387)
71 2hsg_A Glucose-resistance amyl 56.2 68 0.0023 30.1 10.5 125 80-253 60-185 (332)
72 3rf7_A Iron-containing alcohol 53.2 11 0.00038 37.8 4.4 53 159-211 94-162 (375)
73 8abp_A L-arabinose-binding pro 52.9 1.4E+02 0.0046 27.3 17.4 173 80-300 2-192 (306)
74 2lnd_A De novo designed protei 52.8 25 0.00086 27.9 5.4 83 142-243 22-104 (112)
75 3okf_A 3-dehydroquinate syntha 52.4 6.5 0.00022 39.9 2.6 49 159-210 108-159 (390)
76 3g85_A Transcriptional regulat 52.0 24 0.00081 32.4 6.3 125 79-253 10-135 (289)
77 2gru_A 2-deoxy-scyllo-inosose 51.7 7.1 0.00024 39.0 2.7 61 159-225 79-142 (368)
78 3l8m_A Probable thiamine pyrop 51.7 31 0.0011 31.7 6.9 70 113-183 23-101 (212)
79 1vlj_A NADH-dependent butanol 51.4 12 0.0004 37.9 4.3 53 159-211 89-154 (407)
80 1tjy_A Sugar transport protein 51.1 1.6E+02 0.0053 27.5 15.7 130 80-252 3-135 (316)
81 3bbl_A Regulatory protein of L 50.8 1.5E+02 0.005 27.0 14.5 124 80-253 4-133 (287)
82 3miz_A Putative transcriptiona 50.6 36 0.0012 31.5 7.3 135 80-264 13-157 (301)
83 1qpz_A PURA, protein (purine n 50.1 1.7E+02 0.0057 27.5 16.0 122 80-252 58-184 (340)
84 1ujn_A Dehydroquinate synthase 49.5 8.4 0.00029 38.2 2.8 49 159-210 69-120 (348)
85 3c3k_A Alanine racemase; struc 49.5 1.5E+02 0.0052 26.9 12.6 121 80-253 8-132 (285)
86 2o20_A Catabolite control prot 48.2 1.8E+02 0.006 27.2 17.7 122 80-252 63-187 (332)
87 3clh_A 3-dehydroquinate syntha 47.8 12 0.00042 36.9 3.7 49 159-210 70-121 (343)
88 3hs3_A Ribose operon repressor 47.6 53 0.0018 30.0 7.9 119 79-252 9-129 (277)
89 1xah_A Sadhqs, 3-dehydroquinat 47.6 11 0.00038 37.2 3.4 49 159-210 75-126 (354)
90 1o2d_A Alcohol dehydrogenase, 47.2 12 0.0004 37.4 3.4 54 159-212 86-152 (371)
91 3eaf_A ABC transporter, substr 46.2 95 0.0032 29.8 9.9 110 92-211 121-236 (391)
92 1kq3_A Glycerol dehydrogenase; 45.3 10 0.00035 37.8 2.6 45 159-209 83-127 (376)
93 2rjo_A Twin-arginine transloca 45.0 2E+02 0.0067 26.8 12.2 132 80-253 5-144 (332)
94 3cqj_A L-ribulose-5-phosphate 44.7 1.5E+02 0.005 27.3 10.7 54 155-208 27-89 (295)
95 2h3h_A Sugar ABC transporter, 44.7 1.9E+02 0.0065 26.6 13.4 83 160-254 46-132 (313)
96 3ce9_A Glycerol dehydrogenase; 43.9 12 0.00041 36.9 2.9 51 159-215 77-127 (354)
97 1sg6_A Pentafunctional AROM po 43.6 17 0.00057 36.6 4.0 49 159-210 88-141 (393)
98 3ipc_A ABC transporter, substr 43.4 42 0.0015 31.7 6.7 105 92-207 118-226 (356)
99 1ta9_A Glycerol dehydrogenase; 42.8 12 0.0004 38.6 2.7 46 159-210 134-179 (450)
100 3brs_A Periplasmic binding pro 42.5 1.6E+02 0.0055 26.5 10.4 128 79-252 4-138 (289)
101 3fst_A 5,10-methylenetetrahydr 42.0 27 0.00092 34.1 5.1 50 158-207 97-153 (304)
102 2fn9_A Ribose ABC transporter, 41.5 2E+02 0.0068 25.9 17.7 87 81-207 3-90 (290)
103 3lkv_A Uncharacterized conserv 40.9 1.7E+02 0.0059 27.3 10.6 72 78-180 6-78 (302)
104 3hcw_A Maltose operon transcri 39.9 1.1E+02 0.0038 28.0 9.0 123 79-253 6-139 (295)
105 3apt_A Methylenetetrahydrofola 39.9 31 0.0011 33.6 5.1 55 153-207 79-150 (310)
106 3h5t_A Transcriptional regulat 38.8 81 0.0028 30.1 8.0 77 160-252 117-196 (366)
107 2qip_A Protein of unknown func 38.1 55 0.0019 28.4 6.1 51 158-211 94-146 (165)
108 3qbe_A 3-dehydroquinate syntha 37.7 25 0.00085 35.3 4.1 49 159-210 88-139 (368)
109 2fqx_A Membrane lipoprotein TM 37.3 2.7E+02 0.0091 26.2 17.1 23 159-181 50-72 (318)
110 3jr7_A Uncharacterized EGV fam 37.2 66 0.0023 31.1 7.0 133 75-234 14-154 (298)
111 3trh_A Phosphoribosylaminoimid 36.3 73 0.0025 28.5 6.5 52 151-209 41-93 (169)
112 3gyb_A Transcriptional regulat 35.7 2.4E+02 0.0082 25.2 16.3 132 79-264 4-142 (280)
113 3uhf_A Glutamate racemase; str 35.3 1E+02 0.0036 29.4 8.0 102 71-206 15-116 (274)
114 3nyi_A FAT acid-binding protei 35.2 40 0.0014 32.6 5.0 129 81-234 3-142 (297)
115 3h75_A Periplasmic sugar-bindi 35.1 2.9E+02 0.0098 25.9 16.8 33 79-112 2-35 (350)
116 4grd_A N5-CAIR mutase, phospho 35.0 36 0.0012 30.6 4.3 52 151-209 47-99 (173)
117 3ot5_A UDP-N-acetylglucosamine 34.9 26 0.0009 34.9 3.8 126 71-208 15-146 (403)
118 1iv0_A Hypothetical protein; r 34.8 28 0.00096 28.1 3.3 31 185-215 38-68 (98)
119 2qu7_A Putative transcriptiona 34.8 88 0.003 28.5 7.2 119 80-252 8-129 (288)
120 3lp8_A Phosphoribosylamine-gly 34.3 78 0.0027 31.9 7.3 96 76-205 17-112 (442)
121 3ors_A N5-carboxyaminoimidazol 34.1 67 0.0023 28.6 5.8 89 151-265 38-132 (163)
122 2obn_A Hypothetical protein; s 33.3 1.2E+02 0.0041 30.1 8.3 159 76-256 72-236 (349)
123 1fa2_A Beta-amylase; TIM barre 33.3 1.8E+02 0.0061 30.3 9.6 85 160-244 36-169 (498)
124 4evq_A Putative ABC transporte 32.5 71 0.0024 30.2 6.4 102 93-206 133-238 (375)
125 4eyg_A Twin-arginine transloca 32.3 54 0.0019 31.0 5.5 103 93-207 121-230 (368)
126 3kuu_A Phosphoribosylaminoimid 32.3 61 0.0021 29.2 5.3 51 152-209 48-99 (174)
127 3td9_A Branched chain amino ac 31.9 96 0.0033 29.3 7.2 107 92-207 129-237 (366)
128 1uta_A FTSN, MSGA, cell divisi 31.9 65 0.0022 24.4 4.9 53 151-203 14-75 (81)
129 2fvy_A D-galactose-binding per 31.8 2.9E+02 0.0099 25.0 16.6 90 81-209 3-93 (309)
130 3nav_A Tryptophan synthase alp 31.5 3.4E+02 0.012 25.7 10.9 135 160-309 7-158 (271)
131 1x60_A Sporulation-specific N- 30.9 73 0.0025 23.8 5.0 51 151-201 14-73 (79)
132 1vdr_A DHFR, dihydrofolate red 30.1 19 0.00066 31.3 1.7 51 159-216 81-131 (162)
133 4af0_A Inosine-5'-monophosphat 29.5 86 0.0029 33.2 6.7 100 163-278 312-413 (556)
134 2x7x_A Sensor protein; transfe 29.3 3.4E+02 0.012 25.0 11.6 126 80-252 6-135 (325)
135 2pn1_A Carbamoylphosphate synt 29.3 3E+02 0.01 25.6 10.3 44 159-205 60-103 (331)
136 3dzc_A UDP-N-acetylglucosamine 29.2 37 0.0013 33.6 3.8 42 160-207 100-142 (396)
137 1wdp_A Beta-amylase; (beta/alp 28.8 2.1E+02 0.0073 29.7 9.3 85 160-244 35-168 (495)
138 3s99_A Basic membrane lipoprot 28.2 2E+02 0.007 28.1 9.0 98 67-206 16-116 (356)
139 3lp6_A Phosphoribosylaminoimid 27.5 74 0.0025 28.6 5.0 53 151-210 42-95 (174)
140 1cz3_A Dihydrofolate reductase 27.2 27 0.00093 30.4 2.1 48 158-212 80-129 (168)
141 1usg_A Leucine-specific bindin 27.2 1E+02 0.0034 28.7 6.3 102 95-206 121-225 (346)
142 1mgp_A Hypothetical protein TM 26.9 57 0.002 31.8 4.6 137 71-234 17-161 (313)
143 3snr_A Extracellular ligand-bi 26.1 1.1E+02 0.0037 28.5 6.3 103 92-206 116-222 (362)
144 3mjf_A Phosphoribosylamine--gl 25.8 55 0.0019 32.9 4.4 89 79-198 2-91 (431)
145 4fle_A Esterase; structural ge 25.6 2.7E+02 0.0093 23.3 8.4 86 175-280 5-94 (202)
146 3mel_A Thiamin pyrophosphokina 25.0 64 0.0022 29.8 4.3 98 84-191 4-111 (222)
147 3hut_A Putative branched-chain 24.3 97 0.0033 29.1 5.7 104 93-207 121-227 (358)
148 3nkl_A UDP-D-quinovosamine 4-d 24.1 91 0.0031 25.5 4.8 45 162-208 56-100 (141)
149 1rcu_A Conserved hypothetical 23.4 3E+02 0.01 24.8 8.4 54 71-125 14-72 (195)
150 1q77_A Hypothetical protein AQ 23.2 78 0.0027 25.4 4.1 41 160-207 98-138 (138)
151 1nu0_A Hypothetical protein YQ 23.1 51 0.0018 28.3 3.0 25 189-213 44-68 (138)
152 3lft_A Uncharacterized protein 23.0 4.3E+02 0.015 24.0 11.5 68 80-179 2-70 (295)
153 2qru_A Uncharacterized protein 22.8 1.8E+02 0.0063 26.2 7.1 42 222-267 73-115 (274)
154 3sg0_A Extracellular ligand-bi 22.7 1.1E+02 0.0037 28.9 5.7 103 92-206 140-246 (386)
155 3lm8_A Thiamine pyrophosphokin 22.7 54 0.0018 30.4 3.3 71 113-183 26-105 (222)
156 2yxb_A Coenzyme B12-dependent 22.7 2.6E+02 0.0089 24.0 7.7 87 80-183 18-110 (161)
157 2nq2_C Hypothetical ABC transp 22.3 1.2E+02 0.0043 28.0 5.9 53 257-310 133-187 (253)
158 3auf_A Glycinamide ribonucleot 22.1 3.8E+02 0.013 24.6 9.1 29 161-190 91-119 (229)
159 3ihk_A Thiamin pyrophosphokina 22.0 1.2E+02 0.0041 27.8 5.5 79 113-192 20-108 (218)
160 2o2g_A Dienelactone hydrolase; 21.9 1.5E+02 0.0053 24.8 6.0 93 173-268 36-134 (223)
161 3oow_A Phosphoribosylaminoimid 21.8 75 0.0026 28.4 3.9 87 152-264 41-133 (166)
162 3dnf_A ISPH, LYTB, 4-hydroxy-3 21.7 1.2E+02 0.0041 29.6 5.6 52 160-213 199-250 (297)
163 3jy6_A Transcriptional regulat 21.4 4.3E+02 0.015 23.5 19.7 125 79-255 6-133 (276)
164 2omk_A Hypothetical protein; s 21.3 4.8E+02 0.017 24.0 9.9 90 84-183 34-131 (231)
165 3lmz_A Putative sugar isomeras 21.1 3.2E+02 0.011 24.5 8.4 50 158-207 30-83 (257)
166 2x5n_A SPRPN10, 26S proteasome 21.1 1.4E+02 0.0048 26.5 5.7 49 160-208 90-145 (192)
167 3tif_A Uncharacterized ABC tra 21.0 1.1E+02 0.0039 27.9 5.2 50 259-309 152-203 (235)
168 3ksr_A Putative serine hydrola 20.9 2E+02 0.0067 25.5 6.8 91 175-270 32-123 (290)
169 1ccw_A Protein (glutamate muta 20.9 1.3E+02 0.0045 25.2 5.2 86 78-180 1-92 (137)
170 1zq1_A Glutamyl-tRNA(Gln) amid 20.7 2.6E+02 0.0088 28.6 8.2 44 161-206 159-202 (438)
171 3pl5_A SMU_165, putative uncha 20.6 1.4E+02 0.0048 29.2 6.0 128 81-234 35-173 (320)
172 3lop_A Substrate binding perip 20.5 1.2E+02 0.0041 28.6 5.5 103 93-206 123-228 (364)
173 2pcj_A ABC transporter, lipopr 20.3 1.4E+02 0.0047 27.1 5.6 56 252-309 140-197 (224)
174 3qyf_A Crispr-associated prote 20.3 4E+02 0.014 26.1 9.1 126 160-295 76-218 (324)
175 2yrx_A Phosphoribosylglycinami 20.1 2.1E+02 0.0073 28.4 7.5 44 158-206 70-113 (451)
176 4h1h_A LMO1638 protein; MCCF-l 20.0 1.5E+02 0.005 28.9 6.0 31 160-190 67-98 (327)
No 1
>2hig_A 6-phospho-1-fructokinase; transferase; 2.40A {Trypanosoma brucei} PDB: 3f5m_A*
Probab=100.00 E-value=4e-111 Score=881.05 Aligned_cols=414 Identities=37% Similarity=0.614 Sum_probs=377.5
Q ss_pred CCCcCCCCCCCCCCCCCcccccCCCceEEEEeeeccccccCCCCCCCCCcceeEEecCCccccccCCCCceEEEEccCCC
Q 042534 12 LKTYTNPLDQNRFFHPSHGFYVSPSDVILRQIVYDLSSACGAFSDSDPRVHVAYHRAGPRKQIFFEPKNTRAAIVTCGGL 91 (447)
Q Consensus 12 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~agpr~~~~f~p~~~kiaIvtsGG~ 91 (447)
+|+|+|||..+.. ..+||+|+|+|++++....+.. ....|+ .+..+|++||||++|||+|+.+||||+|||||
T Consensus 36 ~~~~~~p~~~~~~----~~~~~~~~~~v~~~~~~~~~~~-~~~~~~--~~~~~~~~agpr~~i~f~~~~~rIgIltsGGd 108 (487)
T 2hig_A 36 GADYPNPSKKYSS----RTEFRDKTDYIMYNPRPRDEPS-SENPVS--VSPLLCELAAARSRIHFNPTETTIGIVTCGGI 108 (487)
T ss_dssp CCCEECTTCCGGG----GGGSBSSCCEEESCCCBCC------CCBB--SCCCEEEECCCBSEESSCGGGCEEEEEECSSC
T ss_pred CCCCCCcccccCC----CCeeeCCCCEEEEeeeccCCCc-cccccc--cchHHHHHcCCcceeeecCCCcEEEEEecCCC
Confidence 4899999966543 6889999999999877754421 111111 23458999999999999999999999999999
Q ss_pred CccHHHHHHHHHHHHHHhcCCeEEEEEccccccccc---CCCCeEECChhhhhchhccCCccccccCCcccHHHHHHHHH
Q 042534 92 CPGLNTVIRELVVGLWELYGVRQILGIQAGYRGFYS---TTRNPLVLNPKMVRGWHKLGGTVLETSRGGFDLHQIVDAIQ 168 (447)
Q Consensus 92 ~PGlN~vIr~vv~~~~~~~~~~~V~Gi~~G~~GL~~---~~~~~~~L~~~~v~~i~~~GGt~LGssR~~~~~~~iv~~l~ 168 (447)
|||||++||++|+++..+|++.+||||++||+||++ ++ +++|+|+.|++|+++|||+|||||++.+.++++++|+
T Consensus 109 aPGmNaaIravv~~a~~~~g~~~V~Gi~~G~~GLl~~~~~~--~~~L~~~~V~~i~~~GGTiLGTsR~~~~~~~i~~~l~ 186 (487)
T 2hig_A 109 CPGLNDVIRSITLTGINVYNVKRVIGFRFGYWGLSKKGSQT--AIELHRGRVTNIHHYGGTILGSSRGPQDPKEMVDTLE 186 (487)
T ss_dssp CTTHHHHHHHHHHHHHHHHCCSEEEECSTGGGGGSHHHHTT--CEEECHHHHTTGGGSSSCSSCCCCSCCCHHHHHHHHH
T ss_pred cchhhHHHHHHHHHHHHhCCCcEEEEEccCHHHhhhccCCC--EEECCHHHHHHHHhCCCCeeccCCCCCCHHHHHHHHH
Confidence 999999999999999877887799999999999975 46 9999999999999999999999999999999999999
Q ss_pred HcCCCEEEEecCCCcHHHHHHHHHHHHHcCCcceEeeecccccccccCcCcccChhhHHHHHHHHHHHHHHhhhhcCCcE
Q 042534 169 TNAFNQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGIPKTVDNDVGIIDRSFGFQTAVEMAQQAISAAHVEAESAVNGI 248 (447)
Q Consensus 169 ~~~Id~L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVgIPkTIDNDi~~tD~s~GFdTAv~~~~~ai~~i~~~A~S~~~~v 248 (447)
+++||+||+||||||+++|++|++++++++++|+||||||||||||++||+|||||||+++++++|+++++||.|+++||
T Consensus 187 ~~~Id~LvvIGGdgS~~~A~~L~e~~~~~g~~i~vVGIPkTIDNDl~gTD~T~GFdTAv~~~~eaId~i~~tA~Sh~~rv 266 (487)
T 2hig_A 187 RLGVNILFTVGGDGTQRGALVISQEAKRRGVDISVFGVPKTIDNDLSFSHRTFGFQTAVEKAVQAIRAAYAEAVSANYGV 266 (487)
T ss_dssp HHTCSEEEEEECHHHHHHHHHHHHHHHHHTCCCEEEEEECCTTSSCCCSSCCTTHHHHHHHHHHHHHHHHHHHHTSTTEE
T ss_pred HcCCCEEEEeCCCchHHHHHHHHHHHHHhCCCceEEeccccccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhcCcE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999955799
Q ss_pred EEEEecCCccchHHHHHhhccCCccEEecCCCCCCcchhhhHHHHHHHHHhhCCcEEEEEecCCCCCCchhhhhhhhccc
Q 042534 249 GLVKLMGRSTGHIALHATLSSRDVDCCLIPEMEFYLEGKGGLVEFLDNRLKENGHAVLVVAEGAGQNMIPRTAAQTEERD 328 (447)
Q Consensus 249 ~iVevMGR~sG~lAl~aaLA~~~ad~ilIPE~~f~le~~~~l~~~i~~r~~~k~~~vIvvaEGa~~~~~~~~~~~~~~~D 328 (447)
||||+|||+|||||++|+||+++||+|||||.||+++ ++++.|++|+++++|+|||||||+++.++... ..+|
T Consensus 267 ~vVEVMGR~aG~LAl~agLA~g~ad~ilIPE~p~~l~---~i~~~i~~r~~~k~~~IIvVaEGag~~~~~~~----~~~D 339 (487)
T 2hig_A 267 GVVKLMGRDSGFIAAQAAVASAQANICLVPENPISEQ---EVMSLLERRFCHSRSCVIIVAEGFGQDWGRGS----GGYD 339 (487)
T ss_dssp EEEEECCSSCCHHHHHHHHHHTCCSEEECTTSCCCHH---HHHHHHHHHTTSCSEEEEEEETTTTGGGCCC------CBC
T ss_pred EEEEeCCCCHHHHHHHHHHhhCCCCEEEeCCCCCCHH---HHHHHHHHHHhcCCcEEEEEeCCCcccccccc----cccc
Confidence 9999999999999999999998899999999999998 69999999999999999999999987654322 3579
Q ss_pred ccCCccccchHHHHHHHHHHHhcccCCCcee---EEeEeCCCccccCCCCCHhhHHHHHHHHHHHHHHHHcCCCceEEEE
Q 042534 329 ESGNLVFLDVGSWLKTELKKWWARDHPGELF---TVKYIDPTYMIRAVPANATDNLYCTLLAHSAIHGVMAGYTGFVSGP 405 (447)
Q Consensus 329 ~~Gn~~l~~ig~~L~~~i~~~~~~~~~~~~~---~~k~i~~gy~~Rg~~p~~~Dr~~a~~lG~~AV~~~~~G~tg~~vg~ 405 (447)
++||+++.+++.+|+++|+++++++ +..+ ++|+++|||+|||++||++||+||++||++||+++++|+||+||++
T Consensus 340 a~G~~~l~~i~~~l~~~i~~~~~~~--g~~~~~f~~R~~~lGh~QRgg~Psa~Dr~la~~lG~~AV~~l~~G~tg~mVgi 417 (487)
T 2hig_A 340 ASGNKKLIDIGVILTEKVKAFLKAN--KSRYPDSTVKYIDPSYMIRACPPSANDALFCATLATLAVHEAMAGATGCIIAM 417 (487)
T ss_dssp TTSCBCCCCHHHHHHHHHHHHHHTT--TTTSSSCEEEEECCHHHHHSSCCCHHHHHHHHHHHHHHHHHHHTTEESEEEEE
T ss_pred cccCcchhHHHHHHHHHHHHHHhhc--CccccccceEEccCCcCccCCCCCHHHHHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 9999999999999999999999654 2224 8999999999999999999999999999999999999999999999
Q ss_pred eCCEEEEecHHHHHhhcCCCCCChHHHHHHHHhcCCCC
Q 042534 406 INGNYAYIPLEDVAQATNAVNTKDHKWAWVRTVTNQPD 443 (447)
Q Consensus 406 ~~~~~~~vPl~~v~~~~k~v~~~~~~w~~~~~~t~qp~ 443 (447)
++++++++||++++++.|.+||+++||++++++++||.
T Consensus 418 ~~~~i~~vPl~ev~~~~k~v~~~~~~w~~~~~~~~~~~ 455 (487)
T 2hig_A 418 RHNNYILVPIKVATSVRRVLDLRGQLWRQVREITVDLG 455 (487)
T ss_dssp ETTEEEEEEHHHHTTEEEEECTTSHHHHHHHHHSCCCC
T ss_pred ECCEEEEEEHHHHHccCCCcCcchHHHHHHHHHhCCcc
Confidence 99999999999999999999999999999999999974
No 2
>1zxx_A 6-phosphofructokinase; allosteric regulation, lactobacillus BU transferase; 1.85A {Lactobacillus delbrueckii subsp}
Probab=100.00 E-value=1.8e-91 Score=701.94 Aligned_cols=308 Identities=26% Similarity=0.410 Sum_probs=287.0
Q ss_pred CceEEEEccCCCCccHHHHHHHHHHHHHHhcCCeEEEEEcccccccccCCCCeEECChhhhhchhccCCccccccCCcc-
Q 042534 80 NTRAAIVTCGGLCPGLNTVIRELVVGLWELYGVRQILGIQAGYRGFYSTTRNPLVLNPKMVRGWHKLGGTVLETSRGGF- 158 (447)
Q Consensus 80 ~~kiaIvtsGG~~PGlN~vIr~vv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~~~L~~~~v~~i~~~GGt~LGssR~~~- 158 (447)
++||||+||||||||||++||++|+++. .+++ +||||++||+||++++ +++|+|++|++|+++|||+|||||++.
T Consensus 1 ~k~i~IltsGGdapGmNaair~vv~~a~-~~g~-~v~Gi~~G~~GL~~~~--~~~l~~~~v~~i~~~GGt~LGssR~~~~ 76 (319)
T 1zxx_A 1 MKRIGILTSGGDAPGMNAAVRAVTRVAI-ANGL-EVFGIRYGFAGLVAGD--IFPLESEDVAHLINVSGTFLYSARYPEF 76 (319)
T ss_dssp CCEEEEEECSSCCTTHHHHHHHHHHHHH-TTTC-EEEEECTHHHHHHHTC--EEECCGGGGTTCTTCCSCTTCCCCCGGG
T ss_pred CCEEEEEccCCCchhHHHHHHHHHHHHH-HCCC-EEEEEccChHHHcCCC--EEECCHHHHHhHHhCCCcccccCCCCcc
Confidence 3789999999999999999999999986 5775 9999999999999999 999999999999999999999999983
Q ss_pred ----cHHHHHHHHHHcCCCEEEEecCCCcHHHHHHHHHHHHHcCCcceEeeecccccccccCcCcccChhhHHHHHHHHH
Q 042534 159 ----DLHQIVDAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGIPKTVDNDVGIIDRSFGFQTAVEMAQQAI 234 (447)
Q Consensus 159 ----~~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVgIPkTIDNDi~~tD~s~GFdTAv~~~~~ai 234 (447)
++++++++|++++||+||+||||||+++|++|+++ +++|||||||||||+++||+|||||||+++++++|
T Consensus 77 ~~~~~~~~~~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~------~i~vvgiPkTIDNDl~~td~t~GfdTA~~~~~~ai 150 (319)
T 1zxx_A 77 AEEEGQLAGIEQLKKHGIDAVVVIGGDGSYHGALQLTRH------GFNSIGLPGTIDNDIPYTDATIGYDTACMTAMDAI 150 (319)
T ss_dssp TSHHHHHHHHHHHHHTTCCEEEEEECHHHHHHHHHHHHT------TCCEEEEEEETTCCCTTCSCCEEHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCEEEEECCchHHHHHHHHHHh------CCCEEEEeecccCCCCCCcCCCCHHHHHHHHHHHH
Confidence 48999999999999999999999999999999974 68999999999999999999999999999999999
Q ss_pred HHHHHhhhhcCCcEEEEEecCCccchHHHHHhhccCCccEEecCCCCCCcchhhhHHHHHHHHHh-hCCcEEEEEecCCC
Q 042534 235 SAAHVEAESAVNGIGLVKLMGRSTGHIALHATLSSRDVDCCLIPEMEFYLEGKGGLVEFLDNRLK-ENGHAVLVVAEGAG 313 (447)
Q Consensus 235 ~~i~~~A~S~~~~v~iVevMGR~sG~lAl~aaLA~~~ad~ilIPE~~f~le~~~~l~~~i~~r~~-~k~~~vIvvaEGa~ 313 (447)
++++++|.| |+||||||+|||+|||||++++||++ ||+|||||.||+++ ++++.|++|++ +|+|+|||||||+.
T Consensus 151 d~i~~ta~s-~~rv~iVEvMGR~aG~lAl~a~lA~g-a~~iliPE~~~~~~---~i~~~i~~~~~~gk~~~iIvvaEG~~ 225 (319)
T 1zxx_A 151 DKIRDTASS-HHRVFIVNVMGRNCGDIAMRVGVACG-ADAIVIPERPYDVE---EIANRLKQAQESGKDHGLVVVAEGVM 225 (319)
T ss_dssp HHHHHHHHH-TTCEEEEEECCTTCCHHHHHHHHHTT-CSEEECTTSCCCHH---HHHHHHHHHHHTTCCCEEEEEETTTC
T ss_pred HHHHHHHhc-CCCEEEEEeCCCCHHHHHHHHHHhcC-CCEEEeCCCCCCHH---HHHHHHHHHHHcCCCcEEEEEeCCcC
Confidence 999999999 67999999999999999999999998 99999999999998 79999999985 68999999999984
Q ss_pred CCCchhhhhhhhcccccCCccccchHHHHHHHHHHHhcccCCCceeEEeEeCCCccccCCCCCHhhHHHHHHHHHHHHHH
Q 042534 314 QNMIPRTAAQTEERDESGNLVFLDVGSWLKTELKKWWARDHPGELFTVKYIDPTYMIRAVPANATDNLYCTLLAHSAIHG 393 (447)
Q Consensus 314 ~~~~~~~~~~~~~~D~~Gn~~l~~ig~~L~~~i~~~~~~~~~~~~~~~k~i~~gy~~Rg~~p~~~Dr~~a~~lG~~AV~~ 393 (447)
+ +.+|+++|+++++ +++|+++|||+|||++||++||+||++||++||++
T Consensus 226 ~------------------------~~~l~~~i~~~~~-------~~~r~~~lGh~qRgg~ps~~Dr~~a~~lG~~Av~~ 274 (319)
T 1zxx_A 226 T------------------------ADQFMAELKKYGD-------FDVRANVLGHMQRGGTPTVSDRVLASKLGSEAVHL 274 (319)
T ss_dssp C------------------------HHHHHHHHHHSSC-------CCEEEEECGGGGGCSCCCHHHHHHHHHHHHHHHHH
T ss_pred h------------------------HHHHHHHHHHhhC-------ceEEEecCCccccCCCCCHHHHHHHHHHHHHHHHH
Confidence 2 3468888887643 67899999999999999999999999999999999
Q ss_pred HHcCCCceEEEEeCCEEEEecHHHHHhhcCCCCCChHHHH
Q 042534 394 VMAGYTGFVSGPINGNYAYIPLEDVAQATNAVNTKDHKWA 433 (447)
Q Consensus 394 ~~~G~tg~~vg~~~~~~~~vPl~~v~~~~k~v~~~~~~w~ 433 (447)
+++|++|+||++++++++++||+++++++|.+|++.....
T Consensus 275 ~~~g~~g~mv~~~~~~~~~~pl~~~~~~~k~~~~~~~~~~ 314 (319)
T 1zxx_A 275 LLEGKGGLAVGIENGKVTSHDILDLFDESHRGDYDLLKLN 314 (319)
T ss_dssp HHTTCCSEEEEEETTEEEEEEHHHHTTCCCCCCTHHHHHH
T ss_pred HHcCCCCEEEEEECCEEEEEEHHHHHhcCCCCCHHHHHHH
Confidence 9999999999999999999999999999999976644433
No 3
>1pfk_A Phosphofructokinase; transferase(phosphotransferase); HET: FBP ADP; 2.40A {Escherichia coli} SCOP: c.89.1.1 PDB: 2pfk_A
Probab=100.00 E-value=3.1e-91 Score=700.48 Aligned_cols=309 Identities=25% Similarity=0.355 Sum_probs=287.0
Q ss_pred CceEEEEccCCCCccHHHHHHHHHHHHHHhcCCeEEEEEcccccccccCCCCeEECChhhhhchhccCCccccccCCcc-
Q 042534 80 NTRAAIVTCGGLCPGLNTVIRELVVGLWELYGVRQILGIQAGYRGFYSTTRNPLVLNPKMVRGWHKLGGTVLETSRGGF- 158 (447)
Q Consensus 80 ~~kiaIvtsGG~~PGlN~vIr~vv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~~~L~~~~v~~i~~~GGt~LGssR~~~- 158 (447)
++||||+||||||||||++||++|+++. .+++ +||||++||+||++++ +++|+|+.|++|+++|||+|||||++.
T Consensus 2 ~k~i~IltsGGdapGmNaair~vv~~a~-~~g~-~v~Gi~~G~~GL~~~~--~~~l~~~~v~~i~~~GGt~LGssR~~~~ 77 (320)
T 1pfk_A 2 IKKIGVLTSGGDAPGMNAAIRGVVRSAL-TEGL-EVMGIYDGYLGLYEDR--MVQLDRYSVSDMINRGGTFLGSARFPEF 77 (320)
T ss_dssp CCEEEEEECSSCCTTHHHHHHHHHHHHH-HTTC-EEEEESTHHHHHHTTC--EEEECSGGGTTCTTCCSCTTCCCCCGGG
T ss_pred CCEEEEEccCCCchhHHHHHHHHHHHHH-HCCC-EEEEEecChHHhcCCC--EEECCHHHHhhHHhCCCCeeccCCCCCC
Confidence 4789999999999999999999999986 4775 9999999999999999 999999999999999999999999983
Q ss_pred ----cHHHHHHHHHHcCCCEEEEecCCCcHHHHHHHHHHHHHcCCcceEeeecccccccccCcCcccChhhHHHHHHHHH
Q 042534 159 ----DLHQIVDAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGIPKTVDNDVGIIDRSFGFQTAVEMAQQAI 234 (447)
Q Consensus 159 ----~~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVgIPkTIDNDi~~tD~s~GFdTAv~~~~~ai 234 (447)
++++++++|++++||+||+||||||+++|++|+++ +++|||||||||||+++||+|||||||+++++++|
T Consensus 78 ~~~~~~~~~~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~------~i~vvgiPkTIDNDl~~td~t~GfdTA~~~~~~ai 151 (320)
T 1pfk_A 78 RDENIRAVAIENLKKRGIDALVVIGGDGSYMGAMRLTEM------GFPCIGLPGTIDNDIKGTDYTIGFFTALSTVVEAI 151 (320)
T ss_dssp GSHHHHHHHHHHHHHTTCCEEEEEECHHHHHHHHHHHHT------TCCEEEEEBCTTCCCTTCSCCBTHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEECCCchHHHHHHHHhh------CCCEEEEeccccCCCCCCcCCCCHHHHHHHHHHHH
Confidence 37999999999999999999999999999999873 78999999999999999999999999999999999
Q ss_pred HHHHHhhhhcCCcEEEEEecCCccchHHHHHhhccCCccEEecCCCCCCcchhhhHHHHHHHHHh-hCCcEEEEEecCCC
Q 042534 235 SAAHVEAESAVNGIGLVKLMGRSTGHIALHATLSSRDVDCCLIPEMEFYLEGKGGLVEFLDNRLK-ENGHAVLVVAEGAG 313 (447)
Q Consensus 235 ~~i~~~A~S~~~~v~iVevMGR~sG~lAl~aaLA~~~ad~ilIPE~~f~le~~~~l~~~i~~r~~-~k~~~vIvvaEGa~ 313 (447)
++++++|.| |+||||||+|||+|||||++++||++ ||+|||||.||+++ ++++.|++|++ +|+|+|||||||++
T Consensus 152 d~i~~ta~s-~~rv~iVEvMGR~aG~lAl~a~lA~g-a~~iliPE~~~~~~---~i~~~i~~~~~~gk~~~iIvvaEG~~ 226 (320)
T 1pfk_A 152 DRLRDTSSS-HQRISVVEVMGRYCGDLTLAAAIAGG-CEFVVVPEVEFSRE---DLVNEIKAGIAKGKKHAIVAITEHMC 226 (320)
T ss_dssp HHHHHHHHH-HTCEEEEEECCTTCCHHHHHHHHHTT-CSEEECTTSCCCHH---HHHHHHHHHHHTTCSCEEEEEESSSS
T ss_pred HHHHHHHhc-CCCEEEEEeCCcCHHHHHHHHHHhcC-CCEEEeCCCCCCHH---HHHHHHHHHHHcCCCcEEEEEeCCcc
Confidence 999999999 56999999999999999999999998 99999999999998 79999999985 68999999999984
Q ss_pred CCCchhhhhhhhcccccCCccccchHHHHHHHHHHHhcccCCCceeEEeEeCCCccccCCCCCHhhHHHHHHHHHHHHHH
Q 042534 314 QNMIPRTAAQTEERDESGNLVFLDVGSWLKTELKKWWARDHPGELFTVKYIDPTYMIRAVPANATDNLYCTLLAHSAIHG 393 (447)
Q Consensus 314 ~~~~~~~~~~~~~~D~~Gn~~l~~ig~~L~~~i~~~~~~~~~~~~~~~k~i~~gy~~Rg~~p~~~Dr~~a~~lG~~AV~~ 393 (447)
.+++|+++|+++.+ +++|++.|||+|||++||++||+||++||++||++
T Consensus 227 ------------------------~~~~la~~i~~~~~-------~~~r~~~lGh~qRgg~ps~~Dr~~a~~lG~~Av~~ 275 (320)
T 1pfk_A 227 ------------------------DVDELAHFIEKETG-------RETRATVLGHIQRGGSPVPYDRILASRMGAYAIDL 275 (320)
T ss_dssp ------------------------CHHHHHHHHHHHHS-------SCEEEEECGGGGGCSCCCHHHHHHHHHHHHHHHHH
T ss_pred ------------------------hHHHHHHHHHHHhC-------CeEEEEcCCccccCCCCCHHHHHHHHHHHHHHHHH
Confidence 14568888887754 57899999999999999999999999999999999
Q ss_pred HHcCCCceEEEEeCCEEEEecHHHHH-hhcCCCCCChHHHHH
Q 042534 394 VMAGYTGFVSGPINGNYAYIPLEDVA-QATNAVNTKDHKWAW 434 (447)
Q Consensus 394 ~~~G~tg~~vg~~~~~~~~vPl~~v~-~~~k~v~~~~~~w~~ 434 (447)
+++|++|+||++++++++++||++++ +++|.+|++...+.+
T Consensus 276 ~~~g~~g~mv~~~~~~~~~~pl~~~~~~~~k~~~~~~~~~~~ 317 (320)
T 1pfk_A 276 LLAGYGGRCVGIQNEQLVHHDIIDAIENMKRPFKGDWLDCAK 317 (320)
T ss_dssp HHHTCCSEEEEEETTEEEEEEHHHHHHHCCCCCCHHHHHHHH
T ss_pred HHcCCCCEEEEEECCEEEEEEHHHHHhhCCCCCCHHHHHHHH
Confidence 99999999999999999999999999 888999855544443
No 4
>3hno_A Pyrophosphate-dependent phosphofructokinase; structural genomics, PSI-2, protein structure initiative; 2.00A {Nitrosospira multiformis atcc 25196} PDB: 3k2q_A
Probab=100.00 E-value=1.2e-91 Score=726.12 Aligned_cols=334 Identities=17% Similarity=0.235 Sum_probs=293.3
Q ss_pred CCceEEEEccCCCCccHHHHHHHHHHHHHHhcC--CeEEEEEcccccccccCCCCeEECChh---hhhchhccCCccccc
Q 042534 79 KNTRAAIVTCGGLCPGLNTVIRELVVGLWELYG--VRQILGIQAGYRGFYSTTRNPLVLNPK---MVRGWHKLGGTVLET 153 (447)
Q Consensus 79 ~~~kiaIvtsGG~~PGlN~vIr~vv~~~~~~~~--~~~V~Gi~~G~~GL~~~~~~~~~L~~~---~v~~i~~~GGt~LGs 153 (447)
+++||||+||||||||||++||++|+++.. ++ +.+||||++||+||++++ +++|++. .|++|+++|||+|||
T Consensus 2 ~~kni~VltsGGdapGmNa~Ir~vv~~a~~-~g~~~~~V~Gi~~G~~GLl~~~--~~~l~~~~~~~v~~i~~~GGtiLGS 78 (419)
T 3hno_A 2 AAKNAFYAQSGGVTAVINASAAGVIEAARK-QSGKIGRIYAGRNGIIGALTED--LIDTGQESDAAISALRYTPSGAFGS 78 (419)
T ss_dssp CCCEEEEEECSSCCSSHHHHHHHHHHHHHH-HCSSCCCEEEETTTHHHHHTTC--EEEGGGSCHHHHHHGGGCCSCTTCC
T ss_pred CCceEEEEccCCChHHHHHHHHHHHHHHHH-cCCCCcEEEEEeCChHHhCCCC--cccCccccHHHHHHHHcCCCceecC
Confidence 357999999999999999999999999964 55 348999999999999999 9998554 899999999999999
Q ss_pred cCCcc--------cHHHHHHHHHHcCCCEEEEecCCCcHHHHHHHHHHHHHcCCcceEeeecccccccccCcCcccChhh
Q 042534 154 SRGGF--------DLHQIVDAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGIPKTVDNDVGIIDRSFGFQT 225 (447)
Q Consensus 154 sR~~~--------~~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVgIPkTIDNDi~~tD~s~GFdT 225 (447)
||+++ ++++++++|++++||+||+||||||+++|++|++++++++++++||||||||||||++||+||||||
T Consensus 79 sR~~~~~~~~~~~~~~~~~~~l~~~~Id~Lv~IGGdgS~~~A~~L~~~~~~~g~~i~vIGiPkTIDNDl~~tD~t~GFdT 158 (419)
T 3hno_A 79 CRYKLKSLEQNRREYERLIEVFKAHDIGYFFYNGGGDSADTCLKVSQLSGTLGYPIQAIHVPKTVDNDLPITDCCPGFGS 158 (419)
T ss_dssp CCCC------CHHHHHHHHHHHHHTTEEEEEEEESHHHHHHHHHHHHHHHHTTCCCEEEEEECCTTCCCSSSSSCTTHHH
T ss_pred CCCCccccccCHHHHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHHHhCCCccEEEecccccCCCcCCCCCCCchH
Confidence 99874 3789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhcCC---cEEEEEecCCccchHHHHHhhcc----CCccEEecCCCCCCcchhhhHHHHHHHHH
Q 042534 226 AVEMAQQAISAAHVEAESAVN---GIGLVKLMGRSTGHIALHATLSS----RDVDCCLIPEMEFYLEGKGGLVEFLDNRL 298 (447)
Q Consensus 226 Av~~~~~ai~~i~~~A~S~~~---~v~iVevMGR~sG~lAl~aaLA~----~~ad~ilIPE~~f~le~~~~l~~~i~~r~ 298 (447)
|+++++++|+++..|+.|+++ ||||||+|||+|||||++++||+ +.||+|||||.||+++ ++++.|++++
T Consensus 159 A~~~~~~~i~~~~~d~~ss~~sh~rv~iVEvMGR~aG~lAl~aglA~~~~~~gad~ilIPE~~f~~~---~~~~~i~~~~ 235 (419)
T 3hno_A 159 VAKYIAVSTLEASFDVASMSATSTKVFVLEVMGRHAGWIAAAGGLASSPEREIPVVILFPEISFDKQ---KFLAKVDSCV 235 (419)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTSCCEEEEEECCSSCCHHHHGGGGGCCSSSCCCEEEECTTSCCCHH---HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhccCCCcEEEEEcCCcChhHHHHHHHHhcccCCCCceEEEeCCCCCCHH---HHHHHHHHHH
Confidence 999999999999666665454 99999999999999999999994 2399999999999998 7999999999
Q ss_pred hhCCcEEEEEecCCCCC---CchhhhhhhhcccccCCccccchHHHHHHHHHHHhcccCCCceeEEeEeCCCccccCCC-
Q 042534 299 KENGHAVLVVAEGAGQN---MIPRTAAQTEERDESGNLVFLDVGSWLKTELKKWWARDHPGELFTVKYIDPTYMIRAVP- 374 (447)
Q Consensus 299 ~~k~~~vIvvaEGa~~~---~~~~~~~~~~~~D~~Gn~~l~~ig~~L~~~i~~~~~~~~~~~~~~~k~i~~gy~~Rg~~- 374 (447)
++++|+|||||||+.+. ++.+ ...+|++||++|++++.+|+++|+++++ +++|+++|||+|||++
T Consensus 236 ~~~~~~iIvVaEG~~~~~g~~i~~----~~~~D~~G~~~l~gi~~~la~~i~~~~g-------~~~R~~~lGh~QRgg~p 304 (419)
T 3hno_A 236 KKFGYCSVVVSEGVKGDDGKFLSD----QGVRDAFGHAQLGGVAPVVASMVKEGLG-------LKYHWGVADYLQRAARH 304 (419)
T ss_dssp HHHSCEEEEEETTCCCSSSCC-------------------CCSHHHHHHHHHHHHC-------CCEEEEECTHHHHSCGG
T ss_pred HhCCCEEEEEeCCCcccCCcchhc----ccccccccCcccCcHHHHHHHHHHHHhC-------CceEEcccchhhccCCC
Confidence 88899999999999752 2221 2358999999999999999999999986 4688999999999998
Q ss_pred -CCHhhHHHHHHHHHHHHHHHHcCCCceEEEEeCC-------EEEEecHHHHHhhcCCCCCCh
Q 042534 375 -ANATDNLYCTLLAHSAIHGVMAGYTGFVSGPING-------NYAYIPLEDVAQATNAVNTKD 429 (447)
Q Consensus 375 -p~~~Dr~~a~~lG~~AV~~~~~G~tg~~vg~~~~-------~~~~vPl~~v~~~~k~v~~~~ 429 (447)
||++||+||++||.+||+++++|++|+||+++++ +++.+||+++++++|.||++.
T Consensus 305 ~ps~~Dr~la~~lG~~Av~~~~~G~~g~mv~~~~~~~~~y~~~~~~vpl~~~~~~~k~v~~~~ 367 (419)
T 3hno_A 305 IASKTDVEQAYAMGQAAVEFAVQGHNSVMPTIERISARPYQWKVGMAQLSQVANVEKMMPENF 367 (419)
T ss_dssp GCBHHHHHHHHHHHHHHHHHHHHTCCSEEEEEEEEEC-CCEEEEEEEEHHHHSSCCCCCCGGG
T ss_pred CCCHHHHHHHHHHHHHHHHHHHcCCCCeEEEEECCCCCccccEEEEeeHHHHhcccCCCCHHH
Confidence 8999999999999999999999999999999986 799999999999999998653
No 5
>4a3s_A 6-phosphofructokinase; transferase, glycolysis, degradosome; 2.30A {Bacillus subtilis} PDB: 6pfk_A 3u39_A 3pfk_A 4pfk_A* 1mto_A*
Probab=100.00 E-value=2.4e-90 Score=695.19 Aligned_cols=311 Identities=25% Similarity=0.358 Sum_probs=286.0
Q ss_pred CceEEEEccCCCCccHHHHHHHHHHHHHHhcCCeEEEEEcccccccccCCCCeEECChhhhhchhccCCccccccCCcc-
Q 042534 80 NTRAAIVTCGGLCPGLNTVIRELVVGLWELYGVRQILGIQAGYRGFYSTTRNPLVLNPKMVRGWHKLGGTVLETSRGGF- 158 (447)
Q Consensus 80 ~~kiaIvtsGG~~PGlN~vIr~vv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~~~L~~~~v~~i~~~GGt~LGssR~~~- 158 (447)
++|||||||||||||||++||++|+++. .++. +||||++||+||++++ +++|+++.|++|+++|||+|||||++.
T Consensus 1 mkrIgIltsGG~~pG~Na~ir~vv~~a~-~~g~-~v~Gi~~G~~Gl~~~~--~~~l~~~~v~~i~~~GGt~lgtsR~~~~ 76 (319)
T 4a3s_A 1 MKRIGVLTSGGDSPGMNAAVRAVVRKAI-YHDV-EVYGIYNGYAGLISGK--IEKLELGSVGDIIHRGGTKLYTARCPEF 76 (319)
T ss_dssp CCEEEEEEESSCCTTHHHHHHHHHHHHH-HTTC-EEEEECSTTHHHHHCC--EEEECGGGGTTCTTCCSCTTCCCCCHHH
T ss_pred CCEEEEECcCCCcHHHHHHHHHHHHHHH-HCCC-EEEEEecchHHHcCCC--eecCCHHHHHhHHhcCCCccccCCCCcc
Confidence 4799999999999999999999999985 4665 8999999999999999 999999999999999999999999863
Q ss_pred ----cHHHHHHHHHHcCCCEEEEecCCCcHHHHHHHHHHHHHcCCcceEeeecccccccccCcCcccChhhHHHHHHHHH
Q 042534 159 ----DLHQIVDAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGIPKTVDNDVGIIDRSFGFQTAVEMAQQAI 234 (447)
Q Consensus 159 ----~~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVgIPkTIDNDi~~tD~s~GFdTAv~~~~~ai 234 (447)
++++++++|++++||+||+||||||+++|++|+++ +++||||||||||||++||+|||||||+++++++|
T Consensus 77 ~~~e~~~~~~~~l~~~~Id~L~~IGGdgS~~~a~~l~~~------~i~vigiPkTIDNDl~~td~t~GfdTA~~~~~~ai 150 (319)
T 4a3s_A 77 KTVEGREKGIANLKKLGIEGLVVIGGDGSYMGAKKLTEH------GFPCVGVPGTIDNDIPGTDFTIGFDTALNTVIDAI 150 (319)
T ss_dssp HSHHHHHHHHHHHHHHTCCEEEEEECTTHHHHHHHHHHT------TCCEEEEEEETTCCCTTCSCCEEHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCCEEEEeCCcHHHHHHHHHhcc------CCcEEEeeccccCCCCCCCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999999999999999873 68899999999999999999999999999999999
Q ss_pred HHHHHhhhhcCCcEEEEEecCCccchHHHHHhhccCCccEEecCCCCCCcchhhhHHHHHHHHHhh-CCcEEEEEecCCC
Q 042534 235 SAAHVEAESAVNGIGLVKLMGRSTGHIALHATLSSRDVDCCLIPEMEFYLEGKGGLVEFLDNRLKE-NGHAVLVVAEGAG 313 (447)
Q Consensus 235 ~~i~~~A~S~~~~v~iVevMGR~sG~lAl~aaLA~~~ad~ilIPE~~f~le~~~~l~~~i~~r~~~-k~~~vIvvaEGa~ 313 (447)
++++++|.| |+|++|||+|||+|||||++++||++ +|+|||||.||+++ ++++.|++++++ ++|+|||||||++
T Consensus 151 ~~i~~~a~s-~~rv~ivEvMGR~aG~lA~~a~la~g-a~~iliPE~~~~~~---~~~~~i~~~~~~g~~~~iivvaEG~~ 225 (319)
T 4a3s_A 151 DKIRDTATS-HERTYVIEVMGRHAGDIALWAGLAGG-AESILIPEADYDMH---EIIARLKRGHERGKKHSIIIVAEGVG 225 (319)
T ss_dssp HHHHHHHHH-HTCEEEEEECCTTCCHHHHHHHHHHT-CSEEEBTTBCCCHH---HHHHHHHHHHTTTCCCEEEEEETTTC
T ss_pred HHHHhhhhc-cCCeEEEEeCCcchhHHHHHHHhccC-CCEEEecCCCCCHH---HHHHHHHHHHHcCCCceEEEEECCCC
Confidence 999999988 78999999999999999999999998 99999999999998 699999988875 7999999999996
Q ss_pred CCCchhhhhhhhcccccCCccccchHHHHHHHHHHHhcccCCCceeEEeEeCCCccccCCCCCHhhHHHHHHHHHHHHHH
Q 042534 314 QNMIPRTAAQTEERDESGNLVFLDVGSWLKTELKKWWARDHPGELFTVKYIDPTYMIRAVPANATDNLYCTLLAHSAIHG 393 (447)
Q Consensus 314 ~~~~~~~~~~~~~~D~~Gn~~l~~ig~~L~~~i~~~~~~~~~~~~~~~k~i~~gy~~Rg~~p~~~Dr~~a~~lG~~AV~~ 393 (447)
+. .++.++++++++ +++|+++|||+|||++||++||++|++||++||++
T Consensus 226 ~~------------------------~~~~~~~~~~~g-------~~~r~~~lGh~qRgg~psa~Dr~~a~~lG~~AV~~ 274 (319)
T 4a3s_A 226 SG------------------------VEFGKRIEEETN-------LETRVSVLGHIQRGGSPSAADRVLASRLGAYAVEL 274 (319)
T ss_dssp CH------------------------HHHHHHHHHHHC-------CCEEEEECGGGGGCSSCCHHHHHHHHHHHHHHHHH
T ss_pred cc------------------------hHHHHHHHHhCC-------ceEEEcchhHHHhCCCCCHHHHHHHHHHHHHHHHH
Confidence 42 245666776665 56889999999999999999999999999999999
Q ss_pred HHcCCCceEEEEeCCEEEEecHHHHHhhcCCCCCChHHHHHHH
Q 042534 394 VMAGYTGFVSGPINGNYAYIPLEDVAQATNAVNTKDHKWAWVR 436 (447)
Q Consensus 394 ~~~G~tg~~vg~~~~~~~~vPl~~v~~~~k~v~~~~~~w~~~~ 436 (447)
+++|+||+||+++|++++++||+++++++|.||++..+..+.|
T Consensus 275 ~~~G~~g~mv~~~~~~~~~~pl~~~~~~~k~v~~~~~~~a~~l 317 (319)
T 4a3s_A 275 LLEGKGGRCVGIQNNKLVDHDIIEILETKHTVEQNMYQLSKEL 317 (319)
T ss_dssp HTTTCCSEEEEEETTEEEEEEHHHHSSSCCCCCHHHHHHHHHH
T ss_pred HHcCCCCeEEEEECCEEEEEeHHHHHhccCCCCHHHHHHHHhc
Confidence 9999999999999999999999999999999997644444433
No 6
>2f48_A Diphosphate--fructose-6-phosphate 1-phosphotransf; phosphotransfer, transferase; HET: FBP; 2.11A {Borrelia burgdorferi} SCOP: c.89.1.1 PDB: 1kzh_A*
Probab=100.00 E-value=1.3e-87 Score=715.70 Aligned_cols=379 Identities=22% Similarity=0.319 Sum_probs=323.1
Q ss_pred CCCCCCCCCcceeEEecCCccccccCCCCceEEEEccCCCCccHHHHHHHHHHHHHHhcCCeEEEEEcccccccccCCCC
Q 042534 52 GAFSDSDPRVHVAYHRAGPRKQIFFEPKNTRAAIVTCGGLCPGLNTVIRELVVGLWELYGVRQILGIQAGYRGFYSTTRN 131 (447)
Q Consensus 52 ~~~~~~~~~~~~~~~~agpr~~~~f~p~~~kiaIvtsGG~~PGlN~vIr~vv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~ 131 (447)
..||++++.+...|.+++++.+ ..+.+||||+||||||||||++||++|+++...++..+||||++||+||++++
T Consensus 47 ~~fp~~~~~p~~~~~~~~~~~~---~~~~~~igIltsGGdaPGmNa~Ir~vv~~~~~~~~~~~v~Gi~~G~~GL~~~~-- 121 (555)
T 2f48_A 47 EFFKNTYGLPIISFTEGESSLS---FSKALNIGIILSGGPAPGGHNVISGVFDAIKKFNPNSKLFGFKGGPLGLLEND-- 121 (555)
T ss_dssp HHTTTTTTCCCEEEEESCCCCS---CCSCCEEEEEEBSSCCTTHHHHHHHHHHHHHHHCTTCEEEEETTTTHHHHTTC--
T ss_pred HhCccccCCCcEEEecCCcccc---cCCCcEEEEECcCCCcHhHHHHHHHHHHHHHHhcCCCEEEEEecChHHhcCCC--
Confidence 4577787888888998887632 34568999999999999999999999999866666679999999999999999
Q ss_pred eEECChhhhhchhccCC-ccccccCCcc----cHHHHHHHHHHcCCCEEEEecCCCcHHHHHHHHHHHHHcCCcceEeee
Q 042534 132 PLVLNPKMVRGWHKLGG-TVLETSRGGF----DLHQIVDAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGI 206 (447)
Q Consensus 132 ~~~L~~~~v~~i~~~GG-t~LGssR~~~----~~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVgI 206 (447)
+++|+++.|++|+++|| |+|||||+++ ++++++++|++++||+||+||||||+++|++|++++++++++|+||||
T Consensus 122 ~~~L~~~~v~~i~~~GGstiLGssR~~~~~~e~~~~~~~~l~~~~Id~LvvIGGdgS~~~A~~L~e~~~~~~~~i~vIGi 201 (555)
T 2f48_A 122 KIELTESLINSYRNTGGFDIVSSGRTKIETEEHYNKALFVAKENNLNAIIIIGGDDSNTNAAILAEYFKKNGENIQVIGV 201 (555)
T ss_dssp EEEECHHHHHHHTTCCSSTTTCCBCCCCCSHHHHHHHHHHHHHTTCSEEEEEESHHHHHHHHHHHHHHHHTTCCCEEEEE
T ss_pred EEECCHHHHHHHHhCCCCcCCCcCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCcHHHHHHHHHHHHHHhCCCCcEEEe
Confidence 99999999999999999 7999999986 378999999999999999999999999999999999999999999999
Q ss_pred cccccccccCc--CcccChhhHHHHHHHHHHHHHHhhhhcCCcEEEEEecCCccchHHHHHhhccCCccEEecCCCC---
Q 042534 207 PKTVDNDVGII--DRSFGFQTAVEMAQQAISAAHVEAESAVNGIGLVKLMGRSTGHIALHATLSSRDVDCCLIPEME--- 281 (447)
Q Consensus 207 PkTIDNDi~~t--D~s~GFdTAv~~~~~ai~~i~~~A~S~~~~v~iVevMGR~sG~lAl~aaLA~~~ad~ilIPE~~--- 281 (447)
||||||||+++ |+|||||||+++++++|++++.||.|+++||||||||||+|||||++||||++ ||+|||||.+
T Consensus 202 PkTIDNDl~~t~id~tiGFdTA~~~~~~aId~i~~da~s~~~rv~iVEvMGR~aG~lAl~a~LA~g-ad~ilIPE~~~~~ 280 (555)
T 2f48_A 202 PKTIDADLRNDHIEISFGFDSATKIYSELIGNLCRDAMSTKKYWHFVKLMGRSASHVALECALKTH-PNICIVSEEVLAK 280 (555)
T ss_dssp EEETTCCCCCSSCCCCEEHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCTTSCHHHHHHHHHHC-CSEECCHHHHHHT
T ss_pred ccccCCCCCCCcCCCCCChhHHHHHHHHHHHHHHHHHHHcCCcEEEEEeCCcCHHHHHHHHHhhcC-CCEEEecCccccc
Confidence 99999999877 99999999999999999999999999888999999999999999999999998 9999999986
Q ss_pred -CCcchh-hhHHHHHHHHH-hhCCcEEEEEecCCCCCCchh---------------------------------------
Q 042534 282 -FYLEGK-GGLVEFLDNRL-KENGHAVLVVAEGAGQNMIPR--------------------------------------- 319 (447)
Q Consensus 282 -f~le~~-~~l~~~i~~r~-~~k~~~vIvvaEGa~~~~~~~--------------------------------------- 319 (447)
+++++. +.+++.|++|. ++++|+|||||||+... +++
T Consensus 281 ~~~L~~~~~~i~~~i~~r~~~gk~~~IIvVaEG~~~~-~~~~~~li~el~~~l~~~~~~~~~l~~~~~~~~~~~~Ls~~~ 359 (555)
T 2f48_A 281 KKTLSEIIDEMVSVILKRSLNGDNFGVVIVPEGLIEF-IPEVKSLMLELCDIFDKNEGEFKGLNIEKMKEIFVAKLSDYM 359 (555)
T ss_dssp TCCHHHHHHHHHHHHHHHHHTTCCCEEEEEETTGGGT-SHHHHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHSCHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHcCCCcEEEEEeCCCccc-cchHHHHHHHHhhhhhcccccccccccccchhhhhhccchhh
Confidence 566532 35666666665 46899999999999531 111
Q ss_pred ---------hhhhh-----hcccccCCccccch--HHHHHHHHHHHhcccCC----CceeEEeEeCCCccccCCCCCHhh
Q 042534 320 ---------TAAQT-----EERDESGNLVFLDV--GSWLKTELKKWWARDHP----GELFTVKYIDPTYMIRAVPANATD 379 (447)
Q Consensus 320 ---------~~~~~-----~~~D~~Gn~~l~~i--g~~L~~~i~~~~~~~~~----~~~~~~k~i~~gy~~Rg~~p~~~D 379 (447)
..+.. .++|++||++|+++ +++|.++|+++++++.. ...++.|...|||+|||+.||++|
T Consensus 360 ~~~~~~lp~~i~~~l~~~~~~~D~~Gn~~l~~i~t~~~L~~~v~~~l~~~~~~~~~~~~~~~r~~~lGy~qRgg~PS~~D 439 (555)
T 2f48_A 360 KGVYLSLPLFIQFELIKSILERDPHGNFNVSRVPTEKLFIEMIQSRLNDMKKRGEYKGSFTPVDHFFGYEGRSAFPSNFD 439 (555)
T ss_dssp HHHHHTSCHHHHHHHHHHHHTCCTTCCCCCTTSCHHHHHHHHHHHHHHHHHTTTCCCSCCCEEEEEESHHHHTSCCCHHH
T ss_pred hhhhccchHHHHHHhhccccccCCCCCEeeccccHHHHHHHHHHHHHHHHhcccCcccceeeeeccCCcchhCCCCCHHH
Confidence 01110 35799999999988 55555555555543210 112677888899999999999999
Q ss_pred HHHHHHHHHHHHHHHHcCCCceEEEEeCC-------EEEEecHHHHHhhc------------CCCCCChHHHHHHHH
Q 042534 380 NLYCTLLAHSAIHGVMAGYTGFVSGPING-------NYAYIPLEDVAQAT------------NAVNTKDHKWAWVRT 437 (447)
Q Consensus 380 r~~a~~lG~~AV~~~~~G~tg~~vg~~~~-------~~~~vPl~~v~~~~------------k~v~~~~~~w~~~~~ 437 (447)
|+||++||+.||+++++|+||+||+++|. ++..+||.++++.+ +.||.++..|..+..
T Consensus 440 r~la~~lG~~Av~~~~~G~tG~mv~i~~~~~~~~~w~~~~vPl~~~~n~ek~~g~~~p~i~~~~Vdl~~~~f~~~~~ 516 (555)
T 2f48_A 440 SDYCYSLGYNAVVLILNGLTGYMSCIKNLNLKPTDWIAGGVPLTMLMNMEERYGEKKPVIKKALVDLEGRPFKEFVK 516 (555)
T ss_dssp HHHHHHHHHHHHHHHHTTCCSEEEEEECTTSCGGGCEEEEEEGGGGEEEEEETTEEEEEECCCCCCTTSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCCEEEEEECCCCCccceEEEeeeHHHHhhhhhhcCccccceeeeeeCCCCHHHHHHHH
Confidence 99999999999999999999999999875 59999999999854 568888877765443
No 7
>3o8l_A 6-phosphofructokinase, muscle type; transferase; HET: ATP ADP; 3.20A {Oryctolagus cuniculus} PDB: 3o8n_A*
Probab=100.00 E-value=5.1e-85 Score=714.40 Aligned_cols=336 Identities=21% Similarity=0.298 Sum_probs=305.1
Q ss_pred CCceEEEEccCCCCccHHHHHHHHHHHHHHhcCCeEEEEEcccccccccCCCCeEECChhhhhchhccCCccccccCCcc
Q 042534 79 KNTRAAIVTCGGLCPGLNTVIRELVVGLWELYGVRQILGIQAGYRGFYSTTRNPLVLNPKMVRGWHKLGGTVLETSRGGF 158 (447)
Q Consensus 79 ~~~kiaIvtsGG~~PGlN~vIr~vv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~~~L~~~~v~~i~~~GGt~LGssR~~~ 158 (447)
+.+||||+||||||||||++||++|+++. .++ .+||||++||+||+++..++++|+|++|++|+++|||+|||||++.
T Consensus 14 ~~krIaIltsGGdaPGmNaaIravvr~a~-~~g-~~V~Gi~~G~~GL~~~~~~~~~l~~~~v~~i~~~GGTiLGSsR~~~ 91 (762)
T 3o8l_A 14 VGKAIAVLTSGGDAQGMNAAVRAVVRVGI-FTG-ARVFFVHEGYQGLVDGGDHIREATWESVSMMLQLGGTVIGSARCKD 91 (762)
T ss_dssp SSCEEEEECCSSCCTTHHHHHHHHHHHHH-HTT-CEEECCSTHHHHHHSCGGGCCBCCSGGGTTCTTCCSCSSCCCCCCG
T ss_pred cCcEEEEEccCCCchhHhHHHHHHHHHHH-HCC-CEEEEEecChhhhhcCCCcEEECCHHHHHhHHhCCCccccCCCCCc
Confidence 45799999999999999999999999885 355 5999999999999998323999999999999999999999999883
Q ss_pred -----cHHHHHHHHHHcCCCEEEEecCCCcHHHHHHHHHH-----------------HHHcCCcceEeeecccccccccC
Q 042534 159 -----DLHQIVDAIQTNAFNQVYIIGGDGTMRGAVEIFDE-----------------IQRRKINVGVVGIPKTVDNDVGI 216 (447)
Q Consensus 159 -----~~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~~~-----------------~~~~~~~i~VVgIPkTIDNDi~~ 216 (447)
++++++++|++++||+||+||||||+++|+.|+++ +.+++.+++|||||||||||+++
T Consensus 92 f~~~~~~~~~~~~l~~~~Id~LvvIGGdgS~~gA~~l~~e~~~ll~eL~~~g~i~~~~~~~~~~i~vVGIPkTIDNDl~g 171 (762)
T 3o8l_A 92 FREREGRLRAAHNLVKRGITNLCVIGGDGSLTGADTFRSEWSDLLSDLQKAGKITAEEATRSSYLNIVGLVGSIDNDFCG 171 (762)
T ss_dssp GGSHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHHHTTHHHHHHTTTTTSCTTTGGGSTTCCEEEEEEBCTTCCCSS
T ss_pred ccCHHHHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHHhHHHHHHHHhccchhHHHHhcCCCCCeEEeecCcccCCCC
Confidence 36899999999999999999999999999988664 34566789999999999999999
Q ss_pred cCcccChhhHHHHHHHHHHHHHHhhhhcCCcEEEEEecCCccchHHHHHhhccCCccEEecCCCCCCcchhhhHHHHHHH
Q 042534 217 IDRSFGFQTAVEMAQQAISAAHVEAESAVNGIGLVKLMGRSTGHIALHATLSSRDVDCCLIPEMEFYLEGKGGLVEFLDN 296 (447)
Q Consensus 217 tD~s~GFdTAv~~~~~ai~~i~~~A~S~~~~v~iVevMGR~sG~lAl~aaLA~~~ad~ilIPE~~f~le~~~~l~~~i~~ 296 (447)
||+|||||||+++++++|++++++|.| |+|+||||||||+|||||++++||++ ||+|||||.||+++.++.+++.|++
T Consensus 172 TD~TiGfdTA~~~i~eaid~i~~tA~S-h~Rv~iVEvMGR~aG~LAl~aglA~g-ad~ilIPE~p~~~~~~~~~~~~i~~ 249 (762)
T 3o8l_A 172 TDMTIGTDSALHRITEIVDAITTTAQS-HQRTFVLEVMGRHCGYLALVTSLSCG-ADWVFIPECPPDDNWEDHLCRRLSE 249 (762)
T ss_dssp CSCCBTHHHHHHHHHHHHHHHHTTCCS-SCCEEEEEECCSSCCHHHHHHHHHHT-CSBCCCTTSCCCSSCHHHHHHHHHH
T ss_pred CcCCcCchhHHHHHHHHHHHHHHhhhc-CccEEEEEeCCcchhHHHHHHHHhcC-CCEEEecCCCCCcchHHHHHHHHHH
Confidence 999999999999999999999999998 78999999999999999999999998 9999999999998655689999988
Q ss_pred HHh-hCCcEEEEEecCCCCCCchhhhhhhhcccccCCccccchHHHHHHHHHHHhcccCCCceeEEeEeCCCccccCCCC
Q 042534 297 RLK-ENGHAVLVVAEGAGQNMIPRTAAQTEERDESGNLVFLDVGSWLKTELKKWWARDHPGELFTVKYIDPTYMIRAVPA 375 (447)
Q Consensus 297 r~~-~k~~~vIvvaEGa~~~~~~~~~~~~~~~D~~Gn~~l~~ig~~L~~~i~~~~~~~~~~~~~~~k~i~~gy~~Rg~~p 375 (447)
+.+ +++|+|||||||+. |++||+.. +++|+++|+++++ +++|+..|||+|||++|
T Consensus 250 ~~~~gk~~~iVvVaEGa~--------------d~~G~~i~---~~~l~~~i~~~~g-------~~~R~tvLGh~QRgg~P 305 (762)
T 3o8l_A 250 TRTRGSRLNIIIVAEGAI--------------DRNGKPIT---SEGVKDLVVRRLG-------YDTRVTVLGHVQRGGTP 305 (762)
T ss_dssp HHHTTCSCCBBCEETTCC--------------CSSSCCCC---HHHHHHHHHHHTC-------CCEEEECCCSSTTCSCC
T ss_pred HHHcCCCceEEEEeCCcc--------------CCCCCCcH---HHHHHHHHHHHhC-------CCcceeecCccccCCCC
Confidence 765 57899999999984 56677654 4678888888775 56888899999999999
Q ss_pred CHhhHHHHHHHHHHHHHHHHcCC---CceEEEEeCCEEEEecHHHHHhhcCCCCC--ChHHHHHHHHhcCCC
Q 042534 376 NATDNLYCTLLAHSAIHGVMAGY---TGFVSGPINGNYAYIPLEDVAQATNAVNT--KDHKWAWVRTVTNQP 442 (447)
Q Consensus 376 ~~~Dr~~a~~lG~~AV~~~~~G~---tg~~vg~~~~~~~~vPl~~v~~~~k~v~~--~~~~w~~~~~~t~qp 442 (447)
|++||+||++||.+||+++++|+ +++||++++++++++||+++++++|.|++ +..+|.+.+..+||+
T Consensus 306 sa~Dr~lat~lG~~AV~~~~~g~~~~~~~~v~~~~~~i~~~Pl~e~~~~~k~v~~~~~~~~~~~a~~~rg~~ 377 (762)
T 3o8l_A 306 SAFDRILGSRMGVEAVMALLEGTPDTPACVVSLSGNQAVRLPLMECVQVTKDVTKAMDEKRFDEAMKLRGRS 377 (762)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTCCTTSCCEEEEEETTEEEEEEHHHHHHHHHHHHHHHHSSCHHHHHHHHCTH
T ss_pred ChHHHHHHHHHHHHHHHHHHcCCCCCceEEEEEECCEEEEEEHHHHHhccCCCChhhccchHHHHHHhhCch
Confidence 99999999999999999999999 89999999999999999999999999986 577899999988864
No 8
>3o8l_A 6-phosphofructokinase, muscle type; transferase; HET: ATP ADP; 3.20A {Oryctolagus cuniculus} PDB: 3o8n_A*
Probab=100.00 E-value=3e-82 Score=692.50 Aligned_cols=329 Identities=21% Similarity=0.272 Sum_probs=294.4
Q ss_pred CCceEEEEccCCCCccHHHHHHHHHHHHHHhcCCeEEEEEcccccccccCCCCeEECChhhhhchhccCCccccccCCcc
Q 042534 79 KNTRAAIVTCGGLCPGLNTVIRELVVGLWELYGVRQILGIQAGYRGFYSTTRNPLVLNPKMVRGWHKLGGTVLETSRGGF 158 (447)
Q Consensus 79 ~~~kiaIvtsGG~~PGlN~vIr~vv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~~~L~~~~v~~i~~~GGt~LGssR~~~ 158 (447)
+.+||||+||||||||||++||++|+++. .++ .+||||++||+||++++ +++|+|++|++|+++|||+|||||+++
T Consensus 399 ~~~~IgIltsGGdapGmNaaIravv~~~~-~~g-~~v~Gi~~G~~GL~~~~--~~~l~~~~v~~i~~~GGt~LGTsR~~~ 474 (762)
T 3o8l_A 399 GSYTVAVMNVGAPAAGMNAAVRSTVRIGL-IQG-NRVLVVHDGFEGPAKGQ--IEEAGWSYVGGWTGQGGSKLGSKRTLP 474 (762)
T ss_dssp SCCEEEEEEESSCCTTHHHHHHHHHHHHH-HHT-CEEEEESSTTHHHHHTC--EEECCTTTTSSCTTCCSCSSCEECCCS
T ss_pred cCCEEEEEecCCCcHHHHHHHHHHHHHHH-HCC-CEEEEEeccccccccCC--EEECCHHHhhhHHhCCCceeecCCCCc
Confidence 45899999999999999999999999986 456 59999999999999999 999999999999999999999999863
Q ss_pred --cHHHHHHHHHHcCCCEEEEecCCCcHHHHHHHHHHHHHcC-CcceEeeecccccccccCcCcccChhhHHHHHHHHHH
Q 042534 159 --DLHQIVDAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQRRK-INVGVVGIPKTVDNDVGIIDRSFGFQTAVEMAQQAIS 235 (447)
Q Consensus 159 --~~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~~~~~~~~-~~i~VVgIPkTIDNDi~~tD~s~GFdTAv~~~~~ai~ 235 (447)
++++++++|++++||+||+||||||+++|++|++++++++ ++|+|||||||||||+++||+|||||||+++++++|+
T Consensus 475 ~~~~~~~~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~~~~~i~vvgiPkTIDNDl~gTD~TiGfdTA~~~~~~aid 554 (762)
T 3o8l_A 475 KKSFEQISANITKFNIQGLVIIGGFEAYTGGLELMEGRKQFDELCIPFVVIPATVSNNVPGSDFSVGADTALNTICTTCD 554 (762)
T ss_dssp GGGHHHHHHHHHHTTCCCEEEEESHHHHHHHHHHHHHHHHCSTTCSCEEEEEBCTTCCCTTCSCCBTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHHhccccCCCEEeeccccCCCCCCCcCCCChHHHHHHHHHHHH
Confidence 6999999999999999999999999999999999988875 6899999999999999999999999999999999999
Q ss_pred HHHHhhhhcCCcEEEEEecCCccchHHHHHhhccCCccEEecCCCCCCcchhhhHHHHHHHHHhh-CCcEEEEEecCCCC
Q 042534 236 AAHVEAESAVNGIGLVKLMGRSTGHIALHATLSSRDVDCCLIPEMEFYLEGKGGLVEFLDNRLKE-NGHAVLVVAEGAGQ 314 (447)
Q Consensus 236 ~i~~~A~S~~~~v~iVevMGR~sG~lAl~aaLA~~~ad~ilIPE~~f~le~~~~l~~~i~~r~~~-k~~~vIvvaEGa~~ 314 (447)
++++||.|+|+||||||+|||+|||||++++||+| ||+|||||.||++++..+.++++.+|+++ ++++|||||||+..
T Consensus 555 ~i~~tA~ssh~rv~vVEvMGR~aG~lAl~aglA~g-ad~ilIPE~~~~l~~~~~~i~~~~~r~~~~~~~~iVvvaEga~~ 633 (762)
T 3o8l_A 555 RIKQSAAGTKRRVFIIETMGGYCGYLATMAGLAAG-ADAAYIFEEPFTIRDLQANVEHLVQKMKTTVKRGLVLRNEKCNE 633 (762)
T ss_dssp HHTTTTCSSSCEEEEEEECSTTCCHHHHHHHHHTT-CSEEECSSSCCCHHHHHHHHHHHHHHHTSSCSEEEEEEETTSCS
T ss_pred HHHHHHHhCCCcEEEEEeCCcchhHHHHHHHHhhC-CCEEEECCCCCCHHHHHHHHHHHHHHHhcCCCceEEEEECCCCc
Confidence 99999987799999999999999999999999998 99999999999999655556667777754 67899999999965
Q ss_pred CCchhhhhhhhcccccCCccccchHHHHHHHHHHHhcccCCCceeEEeEeCCCccccCCCCCHhhHHHHHHHHHHHHHHH
Q 042534 315 NMIPRTAAQTEERDESGNLVFLDVGSWLKTELKKWWARDHPGELFTVKYIDPTYMIRAVPANATDNLYCTLLAHSAIHGV 394 (447)
Q Consensus 315 ~~~~~~~~~~~~~D~~Gn~~l~~ig~~L~~~i~~~~~~~~~~~~~~~k~i~~gy~~Rg~~p~~~Dr~~a~~lG~~AV~~~ 394 (447)
.+. .+++++.+++.-. . .+++|...|||+|||+.||++||++|++||.+||+++
T Consensus 634 ~~~---------------------~~~~~~~~~~~~~----~-~~d~R~tvLGH~QRGG~Pta~DRilatr~g~~Av~~l 687 (762)
T 3o8l_A 634 NYT---------------------TDFIFNLYSEEGK----G-IFDSRKNVLGHMQQGGSPTPFDRNFATKMGAKAMNWM 687 (762)
T ss_dssp SSC---------------------HHHHHHHHHHHTT----T-TCEEEEEECCCCCTTSCCCHHHHHHHHHHHHHHHHHH
T ss_pred cch---------------------HHHHHHHHHhhcc----C-CceEEEeeCchhhCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 321 2345555544311 1 2788999999999999999999999999999999999
Q ss_pred HcC---------------CCceEEEEeCCEEEEecHHHHHhhcC--CCCCChHHHHHHHHh
Q 042534 395 MAG---------------YTGFVSGPINGNYAYIPLEDVAQATN--AVNTKDHKWAWVRTV 438 (447)
Q Consensus 395 ~~G---------------~tg~~vg~~~~~~~~vPl~~v~~~~k--~v~~~~~~w~~~~~~ 438 (447)
++| .+++|||+++++++++||+++.++.. .--|+.+||..+++.
T Consensus 688 ~~g~~~~~~~g~~~~~~~~~~~~vg~~~~~i~~~pl~e~~~~~d~~~r~~~~~~w~~~~~~ 748 (762)
T 3o8l_A 688 AGKIKESYRNGRIFANTPDSGCVLGMRKRALVFQPVTELQNQTDFEHRIPKEQWWLKLRPI 748 (762)
T ss_dssp HHHHHTTBCSSSBCCCSSTTEEEEEEETTEEEEEEHHHHGGGEETTTTEESSCGGGGTHHH
T ss_pred HhCccccccccccccccCCceEEEEEECCEEEEEEHHHHhhccchhhcCCCCchHHhHHHH
Confidence 997 79999999999999999999987653 233889999988765
No 9
>3o8o_B 6-phosphofructokinase subunit beta; transferase; HET: F6P FDP; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.5e-81 Score=687.45 Aligned_cols=331 Identities=22% Similarity=0.295 Sum_probs=285.9
Q ss_pred CceEEEEccCCCCccHHHHHHHHHHHHHHhcCCeEEEEEcccccccccCC-CCeEECChhhhhchhccCCccccccCCcc
Q 042534 80 NTRAAIVTCGGLCPGLNTVIRELVVGLWELYGVRQILGIQAGYRGFYSTT-RNPLVLNPKMVRGWHKLGGTVLETSRGGF 158 (447)
Q Consensus 80 ~~kiaIvtsGG~~PGlN~vIr~vv~~~~~~~~~~~V~Gi~~G~~GL~~~~-~~~~~L~~~~v~~i~~~GGt~LGssR~~~ 158 (447)
++||||+||||||||||++||++|+++. .+|+ +||||++||+||++++ ..+.+|+|++|++|+++|||+|||||++.
T Consensus 3 ~krIgIltsGGdapGmNaaIravvr~a~-~~g~-~V~Gi~~G~~GL~~~~~~~i~~l~~~~V~~i~~~GGTiLGTsR~~~ 80 (766)
T 3o8o_B 3 QKAIAVMTSGGDAPGMNSNVRAIVRSAI-FKGC-RAFVVMEGYEGLVRGGPEYIKEFHWEDVRGWSAEGGTNIGTARCME 80 (766)
T ss_dssp CCEEEEEEESSCCTTHHHHHHHHHHHHH-HHTC-EEEEETTHHHHHHSCSTTTEEEECGGGGTTGGGCCSCTTCCCCCSG
T ss_pred CcEEEEEeeCCCchhHHHHHHHHHHHHH-HCCC-EEEEEeCChHHHhcCCcccEEECCHHHHhhHHhCCCceeccCCCCc
Confidence 5799999999999999999999999986 4675 9999999999999975 33679999999999999999999999873
Q ss_pred -----cHHHHHHHHHHcCCCEEEEecCCCcHHHHHHHHHH-----------------HHHcCCcceEeeecccccccccC
Q 042534 159 -----DLHQIVDAIQTNAFNQVYIIGGDGTMRGAVEIFDE-----------------IQRRKINVGVVGIPKTVDNDVGI 216 (447)
Q Consensus 159 -----~~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~~~-----------------~~~~~~~i~VVgIPkTIDNDi~~ 216 (447)
.+.+++++|++++||+||+||||||+++|++|+++ ..+++.+++|||||||||||+++
T Consensus 81 ~~~~~~~~~~~~~l~~~~Id~LvvIGGdgS~~~A~~l~~e~~~l~~eL~~~~~is~e~~~~~~~i~vVGiPkTIDNDl~g 160 (766)
T 3o8o_B 81 FKKREGRLLGAQHLIEAGVDALIVCGGDGSLTGADLFRSEWPSLIEELLKTNRISNEQYERMKHLNICGTVGSIDNDMST 160 (766)
T ss_dssp GGSHHHHHHHHHHHHHHTCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHTCCCEEEEEEBCTTCCCTT
T ss_pred ccCHHHHHHHHHHHHHcCCCEEEEeCCChhHHHHHHHHHhhhHHHHHHHhcccccHHHHhcCCCCcEEEEeccccCCCCC
Confidence 25789999999999999999999999999988654 34556789999999999999999
Q ss_pred cCcccChhhHHHHHHHHHHHHHHhhhhcCCcEEEEEecCCccchHHHHHhhccCCccEEecCCCCCCcchh-hhHHHHHH
Q 042534 217 IDRSFGFQTAVEMAQQAISAAHVEAESAVNGIGLVKLMGRSTGHIALHATLSSRDVDCCLIPEMEFYLEGK-GGLVEFLD 295 (447)
Q Consensus 217 tD~s~GFdTAv~~~~~ai~~i~~~A~S~~~~v~iVevMGR~sG~lAl~aaLA~~~ad~ilIPE~~f~le~~-~~l~~~i~ 295 (447)
||+|||||||+++++++|++++++|.| |+|+||||+|||+|||||++++||++ ||+|||||.||+++++ +.+++.++
T Consensus 161 TD~TiGfdTA~~~i~eaid~i~~tA~S-h~RvfvVEvMGR~aG~LAl~aglA~g-Ad~ilIPE~p~~~~~~~~~v~~~i~ 238 (766)
T 3o8o_B 161 TDATIGAYSALDRICKAIDYVEATANS-HSRAFVVEVMGRNCGWLALLAGIATS-ADYIFIPEKPATSSEWQDQMCDIVS 238 (766)
T ss_dssp CSCCBTHHHHHHHHHHHHHHHHHHHHH-TTCEEEEEECCTTCCHHHHHHHHHHT-CSEEECTTCCCCTTHHHHHHHHHHH
T ss_pred CCCCCChhHHHHHHHHHHHHHHhhhhc-cCceEEEEcCCcchhHHHHHHHHhcC-CCEEEccCCCCChHHHHHHHHHHHH
Confidence 999999999999999999999999998 78999999999999999999999998 9999999999999742 23444444
Q ss_pred HHH-hhCCcEEEEEecCCCCCCchhhhhhhhcccccCCccccchHHHHHHHHHHHhcccCCCceeEEeEeCCCccccCCC
Q 042534 296 NRL-KENGHAVLVVAEGAGQNMIPRTAAQTEERDESGNLVFLDVGSWLKTELKKWWARDHPGELFTVKYIDPTYMIRAVP 374 (447)
Q Consensus 296 ~r~-~~k~~~vIvvaEGa~~~~~~~~~~~~~~~D~~Gn~~l~~ig~~L~~~i~~~~~~~~~~~~~~~k~i~~gy~~Rg~~ 374 (447)
++. ++|+|+|||||||+.+.. |+.. .+.+++++|+++++ +++|++.|||+|||++
T Consensus 239 ~~~~~gk~~~IVvVaEGa~~~~--------------~~~~---~~~~l~~~i~~~~g-------~~~R~tvLGh~QRGG~ 294 (766)
T 3o8o_B 239 KHRSRGKRTTIVVVAEGAIAAD--------------LTPI---SPSDVHKVLVDRLG-------LDTRITTLGHVQRGGT 294 (766)
T ss_dssp HHHHTTCCCEEEEEETTCBCTT--------------SCBC---CHHHHHHHHHHTTC-------CCEEEEECGGGGTCSC
T ss_pred HHHhcCCCceEEEEeCCccccc--------------CCcc---hHHHHHHHHHHHhC-------CceeEcccChhhcCCC
Confidence 443 357899999999996431 2211 24577888877654 6788899999999999
Q ss_pred CCHhhHHHHHHHHHHHHHHHHcCCC---ceEEEEeCCEEEEecHHHHHhhcCCCCC--ChHHHHHHHHh
Q 042534 375 ANATDNLYCTLLAHSAIHGVMAGYT---GFVSGPINGNYAYIPLEDVAQATNAVNT--KDHKWAWVRTV 438 (447)
Q Consensus 375 p~~~Dr~~a~~lG~~AV~~~~~G~t---g~~vg~~~~~~~~vPl~~v~~~~k~v~~--~~~~w~~~~~~ 438 (447)
||++||++|++||.+||+++++|++ |+||++++++++.+||++++.++|.|+. +...|.+..+.
T Consensus 295 Psa~DR~lAt~~G~~AV~~~~~g~~~~~~~mv~~~~~~i~~~pl~~~~~~~k~v~~~~~~~~~~~a~~l 363 (766)
T 3o8o_B 295 AVAYDRILATLQGLEAVNAVLESTPDTPSPLIAVNENKIVRKPLMESVKLTKAVAEAIQAKDFKRAMSL 363 (766)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHCCTTSCCEEEEESSSCEEEEEHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CChhhHHHHHHHHHHHHHHHHcCCCCCCceEEEEECCEEEEEEHHHHHhccCccHHHHhcCCHHHHHHc
Confidence 9999999999999999999999997 8999999999999999999988777662 33444444443
No 10
>3o8o_A 6-phosphofructokinase subunit alpha; transferase; HET: F6P FDP; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7e-82 Score=689.87 Aligned_cols=331 Identities=24% Similarity=0.340 Sum_probs=286.1
Q ss_pred CCceEEEEccCCCCccHHHHHHHHHHHHHHhcCCeEEEEEcccccccccCCCCeEECChhhhhchhccCCccccccCCcc
Q 042534 79 KNTRAAIVTCGGLCPGLNTVIRELVVGLWELYGVRQILGIQAGYRGFYSTTRNPLVLNPKMVRGWHKLGGTVLETSRGGF 158 (447)
Q Consensus 79 ~~~kiaIvtsGG~~PGlN~vIr~vv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~~~L~~~~v~~i~~~GGt~LGssR~~~ 158 (447)
+++||||+||||||||||++||++|+++. .+|+ +||||++||+||++++..+.+|+|++|++|+++|||+|||||++.
T Consensus 4 ~~krIgIltsGGdaPGmNaaIravvr~a~-~~g~-~V~Gi~~G~~GL~~~~~~i~~l~~~~V~~i~~~GGTiLGTsR~~~ 81 (787)
T 3o8o_A 4 KKKKIAVMTSGGDSPGMNAAVRAVVRTGI-HFGC-DVFAVYEGYEGLLRGGKYLKKMAWEDVRGWLSEGGTLIGTARSME 81 (787)
T ss_dssp -CCEEEEEEESSCCTTHHHHHHHHHHHHH-HTTC-EEEEETTHHHHHHHCTTSEEECCGGGGTTGGGCCSCTTCCCCCSG
T ss_pred CCcEEEEEeeCCCchhHHHHHHHHHHHHH-HCCC-EEEEEecChHHhcCCCCCeEECCHHHHhhHHhCCCceeccCCCCc
Confidence 45799999999999999999999999986 5775 999999999999998333999999999999999999999999873
Q ss_pred -----cHHHHHHHHHHcCCCEEEEecCCCcHHHHHHHHHH-------H----------HHcCCcceEeeecccccccccC
Q 042534 159 -----DLHQIVDAIQTNAFNQVYIIGGDGTMRGAVEIFDE-------I----------QRRKINVGVVGIPKTVDNDVGI 216 (447)
Q Consensus 159 -----~~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~~~-------~----------~~~~~~i~VVgIPkTIDNDi~~ 216 (447)
.+.+++++|++++||+||+||||||+++|++|+++ + .+++.+++|||||||||||+++
T Consensus 82 f~~~~~~~~~~~~l~~~~Id~LvvIGGdgS~~~A~~l~~e~~~l~~eL~~~~~is~e~~~~~~~i~vVGIPkTIDNDl~g 161 (787)
T 3o8o_A 82 FRKREGRRQAAGNLISQGIDALVVCGGDGSLTGADLFRHEWPSLVDELVAEGRFTKEEVAPYKNLSIVGLVGSIDNDMSG 161 (787)
T ss_dssp GGSHHHHHHHHHHHHHHTEEEEEEEECHHHHHHHHHHHTTHHHHHHHHHSSSSCCTTTTTTTCSCEEEEEEEESSCCCTT
T ss_pred ccCHHHHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHhhHHHHHHHHhcccccHHHHhcCCCCcEEEEeecCcCCCCC
Confidence 26789999999999999999999999999988653 2 2345689999999999999999
Q ss_pred cCcccChhhHHHHHHHHHHHHHHhhhhcCCcEEEEEecCCccchHHHHHhhccCCccEEecCCCCCCcchh-hhHHHHHH
Q 042534 217 IDRSFGFQTAVEMAQQAISAAHVEAESAVNGIGLVKLMGRSTGHIALHATLSSRDVDCCLIPEMEFYLEGK-GGLVEFLD 295 (447)
Q Consensus 217 tD~s~GFdTAv~~~~~ai~~i~~~A~S~~~~v~iVevMGR~sG~lAl~aaLA~~~ad~ilIPE~~f~le~~-~~l~~~i~ 295 (447)
||+|||||||+++++++|++++++|.| |+|+||||||||+|||||++++||+| ||+|||||.||+++++ +.+++.++
T Consensus 162 TD~TiGfdTAl~~i~eaid~i~~tA~S-h~RvfvVEVMGR~aG~LAl~agLA~g-Ad~ilIPE~p~~~~~~~~~v~~~i~ 239 (787)
T 3o8o_A 162 TDSTIGAYSALERICEMVDYIDATAKS-HSRAFVVEVMGRHCGWLALMAGIATG-ADYIFIPERAVPHGKWQDELKEVCQ 239 (787)
T ss_dssp SSCCEEHHHHHHHHHHHHHHHHHHHHH-TTCEEEEEECCTTCCHHHHHHHHHTT-CSEEECGGGCBCTTTHHHHHHHHHH
T ss_pred CCCCCCcHHHHHHHHHHHHHHHhhhhc-cCceEEEEcCCcchhHHHHHHHHhhC-CCEEEeCCCCCChHHHHHHHHHHHH
Confidence 999999999999999999999999998 78999999999999999999999998 9999999999999743 23444454
Q ss_pred HHH-hhCCcEEEEEecCCCCCCchhhhhhhhcccccCCccccchHHHHHHHHHHHhcccCCCceeEEeEeCCCccccCCC
Q 042534 296 NRL-KENGHAVLVVAEGAGQNMIPRTAAQTEERDESGNLVFLDVGSWLKTELKKWWARDHPGELFTVKYIDPTYMIRAVP 374 (447)
Q Consensus 296 ~r~-~~k~~~vIvvaEGa~~~~~~~~~~~~~~~D~~Gn~~l~~ig~~L~~~i~~~~~~~~~~~~~~~k~i~~gy~~Rg~~ 374 (447)
++. ++|+|+|||||||+.+.. |+.. .+..++++|++ ++ +++|...|||+|||++
T Consensus 240 ~~~~~gk~~~IVvVaEGa~~~~--------------~~~~---~~~~~~~~i~~-~g-------~~~R~tvLGh~QRGG~ 294 (787)
T 3o8o_A 240 RHRSKGRRNNTIIVAEGALDDQ--------------LNPV---TANDVKDALIE-LG-------LDTKVTILGHVQRGGT 294 (787)
T ss_dssp HHHHTTCCCEEEEEETTCBBTT--------------SCBC---CHHHHHHHHHH-HT-------CCEEEEECGGGGTCSC
T ss_pred HHHhcCCCceEEEEeCCCcccc--------------Ccch---hHHHHHHHHHH-hC-------CcceeeccCHhhcCCC
Confidence 443 357899999999997431 2211 13456777766 43 5688888999999999
Q ss_pred CCHhhHHHHHHHHHHHHHHHHcCCC---ceEEEEeCCEEEEecHHHHHhhcCCCC--CChHHHHHHHHh
Q 042534 375 ANATDNLYCTLLAHSAIHGVMAGYT---GFVSGPINGNYAYIPLEDVAQATNAVN--TKDHKWAWVRTV 438 (447)
Q Consensus 375 p~~~Dr~~a~~lG~~AV~~~~~G~t---g~~vg~~~~~~~~vPl~~v~~~~k~v~--~~~~~w~~~~~~ 438 (447)
||++||++|++||.+||+++++|++ |+||++++++++++||++++.++|.|+ .+...|.+.++.
T Consensus 295 Psa~DRilAtrlG~~AV~~l~~g~~~~~~~mVg~~~~~i~~~pl~~~~~~~k~v~~~~~~~~~~~a~~l 363 (787)
T 3o8o_A 295 AVAHDRWLATLQGVDAVKAVLEFTPETPSPLIGILENKIIRMPLVESVKLTKSVATAIENKDFDKAISL 363 (787)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHTCCSSCCCEEEEESSSSEEEEEHHHHHHHHHHHHHHHHTTCHHHHHHT
T ss_pred CChHHHHHHHHHHHHHHHHHHcCCCCCCCeEEEEECCEEEEEEHHHHHhccCCchHhhhcCCHHHHHhc
Confidence 9999999999999999999999997 799999999999999999999888887 455566665554
No 11
>3opy_A 6-phosphofructo-1-kinase alpha-subunit; ATP binding, fructose-6-phosphate bindi magnesium binding, citrate binding, ADP binding; HET: ATP; 3.05A {Pichia pastoris}
Probab=100.00 E-value=3.7e-81 Score=689.52 Aligned_cols=331 Identities=23% Similarity=0.301 Sum_probs=284.6
Q ss_pred CCceEEEEccCCCCccHHHHHHHHHHHHHHhcCCeEEEEEcccccccccCCCCeEECChhhhhchhccCCccccccCCcc
Q 042534 79 KNTRAAIVTCGGLCPGLNTVIRELVVGLWELYGVRQILGIQAGYRGFYSTTRNPLVLNPKMVRGWHKLGGTVLETSRGGF 158 (447)
Q Consensus 79 ~~~kiaIvtsGG~~PGlN~vIr~vv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~~~L~~~~v~~i~~~GGt~LGssR~~~ 158 (447)
.++||||+||||||||||++||++|+++. .+|+ +||||++||+||++++..+.+|+|++|++|+++|||+|||||++.
T Consensus 209 ~~krIaIlTSGGdaPGmNAaIRaVVr~a~-~~G~-~V~Gi~~Gy~GLl~g~~~i~~L~~~~V~~i~~~GGTiLGTsR~~~ 286 (989)
T 3opy_A 209 GKKKIAIITSGGDAPGMNAAVRAVTRAGI-FYGC-KVYACYEGYTGLVKGGDMLKELQWQDVRGLLSIGGTIIGTARCKE 286 (989)
T ss_dssp CSEEEEEEECSSCCTTHHHHHHHHHHHHH-HTTE-EEEEECTHHHHHHSCSTTEEEECTTTTTTGGGCCSCSSCCCCSSS
T ss_pred cCCEEEEEeeCCCchhHHHHHHHHHHHHH-HCCC-EEEEEecChHHhcCCCCCeEECCHHHHhhHHhCCCccccCCCCCc
Confidence 35799999999999999999999999985 5775 999999999999997444899999999999999999999999873
Q ss_pred -----cHHHHHHHHHHcCCCEEEEecCCCcHHHHHHHHHHH-----------------HHcCCcceEeeecccccccccC
Q 042534 159 -----DLHQIVDAIQTNAFNQVYIIGGDGTMRGAVEIFDEI-----------------QRRKINVGVVGIPKTVDNDVGI 216 (447)
Q Consensus 159 -----~~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~~~~-----------------~~~~~~i~VVgIPkTIDNDi~~ 216 (447)
.+++++++|++++||+||+||||||+++|++|++|+ .+++.+++||||||||||||++
T Consensus 287 f~~~e~~~~~~~~L~~~gId~LvvIGGDGS~~gA~~L~~e~~~l~~eL~~~gkls~~~~~~~~~i~VVGIPkTIDNDl~g 366 (989)
T 3opy_A 287 FRERWGRLQACYNMVSNGIDALVVCGGDGSLTGADLFRKEWPELIKELLGEDKITKEQYETHRNLTIVGLVGSIDNDMCG 366 (989)
T ss_dssp TTSHHHHHHHHHHHHHTTCCEEEEEECHHHHHHHHHHHHHTTCCCCC--------CHHHHHTTSCEEEEEEEESSCCCTT
T ss_pred ccchhHHHHHHHHHHHcCCCEEEEeCCChhhHHHHHHHHHhhHHHHHHHHccccchhhhhccCCCcEEEEeecccCCCCC
Confidence 368999999999999999999999999999987642 2335689999999999999999
Q ss_pred cCcccChhhHHHHHHHHHHHHHHhhhhcCCcEEEEEecCCccchHHHHHhhccCCccEEecCCCCCCcchhhh-HHHHHH
Q 042534 217 IDRSFGFQTAVEMAQQAISAAHVEAESAVNGIGLVKLMGRSTGHIALHATLSSRDVDCCLIPEMEFYLEGKGG-LVEFLD 295 (447)
Q Consensus 217 tD~s~GFdTAv~~~~~ai~~i~~~A~S~~~~v~iVevMGR~sG~lAl~aaLA~~~ad~ilIPE~~f~le~~~~-l~~~i~ 295 (447)
||+|||||||+++++++|++++++|.| |+|+||||||||+|||||+++|||+| ||+|||||.||+++++.+ +.+.++
T Consensus 367 TD~TiGFdTAl~~i~eaId~I~~TA~S-h~RvfVVEVMGR~aG~LAl~agLA~G-Ad~IlIPE~pf~l~~~~~~l~~~i~ 444 (989)
T 3opy_A 367 TDSTIGAYSSLERIIELVDYIDATAAS-HSRAFVVEVMGRHCGWLGLMSGIATG-ADYIFIPERPPSESNWKDDLKKVCL 444 (989)
T ss_dssp CSCCEEHHHHHHHHHHHHHHHHSSCCC-TTEEEEEECCCSSCTHHHHHHHHHHT-CSEEECTTSCCCTTTHHHHHHHHHH
T ss_pred CCCCCChhhHHHHHHHHHHHHHhhhhc-cCceEEEEcCCCchhHHHHHHHHhcC-CCEEEeCCCCCChHHHHHHHHHHHH
Confidence 999999999999999999999999988 78999999999999999999999998 999999999999975332 333333
Q ss_pred HHH-hhCCcEEEEEecCCCCCCchhhhhhhhcccccCCccccchHHHHHHHHHHHhcccCCCceeEEeEeCCCccccCCC
Q 042534 296 NRL-KENGHAVLVVAEGAGQNMIPRTAAQTEERDESGNLVFLDVGSWLKTELKKWWARDHPGELFTVKYIDPTYMIRAVP 374 (447)
Q Consensus 296 ~r~-~~k~~~vIvvaEGa~~~~~~~~~~~~~~~D~~Gn~~l~~ig~~L~~~i~~~~~~~~~~~~~~~k~i~~gy~~Rg~~ 374 (447)
++. ++++|+|||||||+.+.. ++.. .+..+++.|++ + + +.+|...|||+|||++
T Consensus 445 k~~~~Gk~~~IVVVAEGa~~~~--------------~~~i---~~~~l~~~l~~-~-----G--~dtR~tvLGHiQRGG~ 499 (989)
T 3opy_A 445 RHREKGRRKTTVIVAEGAIDDQ--------------LNPI---TSEEVKDVLVE-I-----G--LDTRITRLGHVQRGGA 499 (989)
T ss_dssp HHHHTTCCEEEEEECTTCBCTT--------------SCBC---CHHHHHHHHHT-T-----T--CEEEEEECGGGGGCSC
T ss_pred HHHhcCCCceEEEEeCCccccc--------------cccc---hHHHHHHHHHH-h-----C--cchhhhhhhHHHcCCC
Confidence 333 347899999999997532 1111 13446666654 3 2 6788889999999999
Q ss_pred CCHhhHHHHHHHHHHHHHHHHcCCC---ceEEEEeCCEEEEecHHHHHhhcCCCC--CChHHHHHHHHh
Q 042534 375 ANATDNLYCTLLAHSAIHGVMAGYT---GFVSGPINGNYAYIPLEDVAQATNAVN--TKDHKWAWVRTV 438 (447)
Q Consensus 375 p~~~Dr~~a~~lG~~AV~~~~~G~t---g~~vg~~~~~~~~vPl~~v~~~~k~v~--~~~~~w~~~~~~ 438 (447)
||++||+||++||.+||+++++|.+ |+|||+++++++++||++++.++|.|+ .+...|.+.++.
T Consensus 500 Psa~DRilAtrlG~~AV~~l~~g~~~~~g~mVgl~~~~iv~vPl~e~v~~~k~V~~a~~~k~f~~a~~l 568 (989)
T 3opy_A 500 PCAFDRFLATVQGVDAVRAVLESTPAIPSPVISILENKIVRQPLVESVAQTKTVSAAIEAKDFDKALQL 568 (989)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHTCCTTSCCEEEEESSSSEEEEEHHHHHHHHHHHHHHHHTTCHHHHHHT
T ss_pred CChhhHHHHHHHHHHHHHHHHcCCCCCCCeEEEEECCEEEEEEHHHHHhccCCchHhhhccCHHHHHhc
Confidence 9999999999999999999999985 899999999999999999999888877 445555555444
No 12
>3opy_B 6-phosphofructo-1-kinase beta-subunit; ATP binding, fructose-6-phosphate bindi magnesium binding, citrate binding, ADP binding; HET: ATP; 3.05A {Pichia pastoris}
Probab=100.00 E-value=4.8e-81 Score=690.41 Aligned_cols=320 Identities=23% Similarity=0.320 Sum_probs=281.5
Q ss_pred CCceEEEEccCCCCccHHHHHHHHHHHHHHhcCCeEEEEEcccccccccCC-CCeEECChhhhhchhccCCccccccCCc
Q 042534 79 KNTRAAIVTCGGLCPGLNTVIRELVVGLWELYGVRQILGIQAGYRGFYSTT-RNPLVLNPKMVRGWHKLGGTVLETSRGG 157 (447)
Q Consensus 79 ~~~kiaIvtsGG~~PGlN~vIr~vv~~~~~~~~~~~V~Gi~~G~~GL~~~~-~~~~~L~~~~v~~i~~~GGt~LGssR~~ 157 (447)
+++||||+||||||||||++||++|+++. .+|+ +||||++||+||++++ ..+.+|+|++|++|+++|||+|||||++
T Consensus 180 ~~krIgIlTsGGdaPGmNAaIRaVVr~a~-~~g~-~V~Gi~~Gy~GLl~g~~~~i~~l~~~~V~~i~~~GGTiLGSsR~~ 257 (941)
T 3opy_B 180 VRKTIGVMTSGGDSPGMNPFVRAVVRAGI-YKGC-KVFCIHEGYEGLVRGGEKYIKETQWHDVRGWLVEGGTNIGTARCK 257 (941)
T ss_dssp CCCCEEEEECSSCCTTHHHHHHHHHHHHH-HTTC-CEEEETTHHHHHHHCSTTTEEEECGGGGTTTTTCCSCSSCCCCCS
T ss_pred cCCEEEEEeeCcCchhHHHHHHHHHHHHH-HCCC-EEEEEeCChHHhccCCcceEEECCHHHHHhHHhCCCceeccCCCC
Confidence 36889999999999999999999999986 5775 9999999999999975 3368999999999999999999999997
Q ss_pred c-----cHHHHHHHHHHcCCCEEEEecCCCcHHHHHHHHH-----------------HHHHcCCcceEeeeccccccccc
Q 042534 158 F-----DLHQIVDAIQTNAFNQVYIIGGDGTMRGAVEIFD-----------------EIQRRKINVGVVGIPKTVDNDVG 215 (447)
Q Consensus 158 ~-----~~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~~-----------------~~~~~~~~i~VVgIPkTIDNDi~ 215 (447)
. .+.+++++|++++||+||+||||||+++|++|++ +..+++.+++|||||||||||++
T Consensus 258 ~f~~~~~~~~~~~~L~~~gId~LvvIGGDGS~~gA~~l~~e~~~l~~eL~~~gkis~e~~~~~~~i~VVGIPkTIDNDl~ 337 (941)
T 3opy_B 258 EFRERSGRLKACKNMIDMGIDALIVCGGDGSLTGADRFRSEWPSLIEELLQTEQISQQQFNTHQNLNICGAVGSIDNDMS 337 (941)
T ss_dssp GGGSHHHHHHHHHHHHHHTCCEEEEEECHHHHHHHHHHHHTCCCCCCC--------CHHHHHTCSCEEEEEEEESSCCCS
T ss_pred cccCHHHHHHHHHHHHHcCCCEEEEeCCChhHHHHHHHHHhhhHHHHHHHhhccccHHHHhcCCCCcEEEEeecccCCCC
Confidence 3 2578999999999999999999999999998764 34566778999999999999999
Q ss_pred CcCcccChhhHHHHHHHHHHHHHHhhhhcCCcEEEEEecCCccchHHHHHhhccCCccEEecCCCCCCcchh-hhHHHHH
Q 042534 216 IIDRSFGFQTAVEMAQQAISAAHVEAESAVNGIGLVKLMGRSTGHIALHATLSSRDVDCCLIPEMEFYLEGK-GGLVEFL 294 (447)
Q Consensus 216 ~tD~s~GFdTAv~~~~~ai~~i~~~A~S~~~~v~iVevMGR~sG~lAl~aaLA~~~ad~ilIPE~~f~le~~-~~l~~~i 294 (447)
+||+|||||||+++++++|++++++|.| |+|+||||||||+|||||+++|||+| ||+|||||.||+++++ +.+++.+
T Consensus 338 gTD~TiGfdTAv~~i~eaId~I~~tA~S-h~RvfvVEVMGR~aG~LAl~agLA~G-Ad~IlIPE~p~~~~~~~~~v~~~i 415 (941)
T 3opy_B 338 STDATIGAFSSLDRICRAIDYIDATANS-HSRAFIVEVMGRHCGWLGLLAGLATS-ADYILIPEKPASSREWQDQMCDIV 415 (941)
T ss_dssp SCSSCEEHHHHHHHHHHHHHHHHSCC-C-CSEEEEEECCCSSCCHHHHHHHHHTT-CSEEECTTSCCCSSCHHHHHHHHH
T ss_pred CCCCCCChHHHHHHHHHHHHHHHhhhhc-cCceEEEEcCCCcccHHHHHHHHhcC-CCEEEECCCCCChHHHHHHHHHHH
Confidence 9999999999999999999999999988 78999999999999999999999998 9999999999999743 2455555
Q ss_pred HHHH-hhCCcEEEEEecCCCCCCchhhhhhhhcccccCCccccchHHHHHHHHHHHhcccCCCceeEEeEeCCCccccCC
Q 042534 295 DNRL-KENGHAVLVVAEGAGQNMIPRTAAQTEERDESGNLVFLDVGSWLKTELKKWWARDHPGELFTVKYIDPTYMIRAV 373 (447)
Q Consensus 295 ~~r~-~~k~~~vIvvaEGa~~~~~~~~~~~~~~~D~~Gn~~l~~ig~~L~~~i~~~~~~~~~~~~~~~k~i~~gy~~Rg~ 373 (447)
+++. ++|+|+|||||||+.+. .|+.. .+.+++++|+++++ +++|...|||+|||+
T Consensus 416 ~~~~~~gk~~~IVVVAEGa~~~--------------~~~~i---~~~~l~~~i~~~~g-------~d~R~tvLGhiQRGG 471 (941)
T 3opy_B 416 GKHRARGKRKTIVIVAEGAISN--------------DLSPI---SCDQVKDVLVNRLG-------LDTRVTTLGHVQRGG 471 (941)
T ss_dssp HHHHHHTCCCEEEEECTTCBCT--------------TCCBC---CHHHHHHHHHHTSC-------CEEEEEECGGGGTCS
T ss_pred HHHHhcCCCcEEEEEeCCcccc--------------cCCcc---hHHHHHHHHHHHhC-------CceeecccChhhcCC
Confidence 5543 45889999999999743 12211 24567777776553 678899999999999
Q ss_pred CCCHhhHHHHHHHHHHHHHHHHcCCC---ceEEEEeCCEEEEecHHHHHhhcCCCC
Q 042534 374 PANATDNLYCTLLAHSAIHGVMAGYT---GFVSGPINGNYAYIPLEDVAQATNAVN 426 (447)
Q Consensus 374 ~p~~~Dr~~a~~lG~~AV~~~~~G~t---g~~vg~~~~~~~~vPl~~v~~~~k~v~ 426 (447)
+|+++||++|++||.+||+++++|++ |+||++++++++++||++++.++|.|+
T Consensus 472 ~Psa~DRilAtrlG~~AV~~l~~g~~~~~g~mVg~~~~~iv~~Pl~e~v~~~k~v~ 527 (941)
T 3opy_B 472 TAVAFDRIYATLQGVEAVNAVLECDADTPSPMIAIKEDQITRVPLVDAVELTQQVA 527 (941)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHCCTTSCCEEEEESSSCEEEEEHHHHHHHHHHHH
T ss_pred CCChhhHHHHHHHHHHHHHHHHcCCCCCCceEEEEECCEEEEEEHHHHHhccCCcH
Confidence 99999999999999999999999997 799999999999999999998877765
No 13
>3o8o_A 6-phosphofructokinase subunit alpha; transferase; HET: F6P FDP; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.7e-80 Score=675.44 Aligned_cols=325 Identities=20% Similarity=0.241 Sum_probs=288.2
Q ss_pred CceEEEEccCCCCccHHHHHHHHHHHHHHhcCCeEEEEEcccccccc-cCCCCeEECChhhhhchhccCCccccccCCcc
Q 042534 80 NTRAAIVTCGGLCPGLNTVIRELVVGLWELYGVRQILGIQAGYRGFY-STTRNPLVLNPKMVRGWHKLGGTVLETSRGGF 158 (447)
Q Consensus 80 ~~kiaIvtsGG~~PGlN~vIr~vv~~~~~~~~~~~V~Gi~~G~~GL~-~~~~~~~~L~~~~v~~i~~~GGt~LGssR~~~ 158 (447)
.+||||+||||||||||++||++|+++. .++ .+||||++||+||+ +++ +++|+|+.|++|+++|||+|||||+++
T Consensus 393 ~~~IgIltsGGdapGmNaaIravv~~a~-~~g-~~v~Gi~~G~~GL~~~~~--~~~L~~~~v~~i~~~GGt~LGTsR~~~ 468 (787)
T 3o8o_A 393 RLNIGIVHVGAPSAALNAATRAATLYCL-SHG-HKPYAIMNGFSGLIQTGE--VKELSWIDVENWHNLGGSEIGTNRSVA 468 (787)
T ss_dssp CCEEEEEEESSCCSSHHHHHHHHHHHHH-HHT-CEEEEETTHHHHHHHHCC--EEECCTTTTTTGGGCCSCTTCCBCCCG
T ss_pred CcEEEEEccCCCCHHHHHHHHHHHHHHH-HCC-CEEEEEccChhhhCCCCC--EEECCHHHHhhhhcCCCceeccCCCCc
Confidence 5899999999999999999999999886 456 49999999999999 788 999999999999999999999999864
Q ss_pred --cHHHHHHHHHHcCCCEEEEecCCCcHHHHHHHHHHHHHcC-CcceEeeecccccccccCcCcccChhhHHHHHHHHHH
Q 042534 159 --DLHQIVDAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQRRK-INVGVVGIPKTVDNDVGIIDRSFGFQTAVEMAQQAIS 235 (447)
Q Consensus 159 --~~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~~~~~~~~-~~i~VVgIPkTIDNDi~~tD~s~GFdTAv~~~~~ai~ 235 (447)
+.++++++|++++||+||+||||||+++|++|++++++++ ++|+||||||||||||++||+|||||||+++++++|+
T Consensus 469 ~~~~~~~~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~~~~~i~vIgiPkTIDNDl~gTD~t~GfdTA~~~~~eaid 548 (787)
T 3o8o_A 469 SEDLGTIAYYFQKNKLDGLIILGGFEGFRSLKQLRDGRTQHPIFNIPMCLIPATVSNNVPGTEYSLGVDTCLNALVNYTD 548 (787)
T ss_dssp GGCHHHHHHHHHHTTCSEEEEEESHHHHHHHHHHHHHTTTCGGGGSCEEEEEBCTTCCCTTCSCCBTHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHhCCCEEEEeCCchHHHHHHHHHHHHHhcCccCCceeecccccccCCCCCcCCCCchHHHHHHHHHHH
Confidence 6899999999999999999999999999999998765554 6799999999999999999999999999999999999
Q ss_pred HHHHhhhhcCCcEEEEEecCCccchHHHHHhhccCCccEEecCCCCCCcchhhhHHHHHH---HHHh-----hCCcEEEE
Q 042534 236 AAHVEAESAVNGIGLVKLMGRSTGHIALHATLSSRDVDCCLIPEMEFYLEGKGGLVEFLD---NRLK-----ENGHAVLV 307 (447)
Q Consensus 236 ~i~~~A~S~~~~v~iVevMGR~sG~lAl~aaLA~~~ad~ilIPE~~f~le~~~~l~~~i~---~r~~-----~k~~~vIv 307 (447)
+++++|.|+|+||||||+|||+|||||++++||+| ||+|||||+||+++. +++.|+ ++++ .+.+.+|+
T Consensus 549 ~i~~ta~ss~~rv~iVEvMGR~aG~lAl~aglA~g-a~~iliPE~~~~~~~---~~~~i~~~~~~~~~~~g~~~~~~iiv 624 (787)
T 3o8o_A 549 DIKQSASATRRRVFVCEVQGGHSGYIASFTGLITG-AVSVYTPEKKIDLAS---IREDITLLKENFRHDKGENRNGKLLV 624 (787)
T ss_dssp HHHHHHHHHSSEEEEEEECCTTCTHHHHHHHHTTT-CSEEECSSSCCCHHH---HHHHHHHHHHHHHHCCSCSSCCEEEE
T ss_pred HHHHHhhccCCcEEEEEeCCCCccHHHHHHHHhcC-CCEEEeCCCCCCHHH---HHHHHHHHHHHHHHhhcCCCCceEEE
Confidence 99999988899999999999999999999999998 999999999999994 665554 4443 13458999
Q ss_pred EecCCCCCCchhhhhhhhcccccCCccccchHHHHHHHHHHHhcccCCCceeEEeEeCCCccccCCCCCHhhHHHHHHHH
Q 042534 308 VAEGAGQNMIPRTAAQTEERDESGNLVFLDVGSWLKTELKKWWARDHPGELFTVKYIDPTYMIRAVPANATDNLYCTLLA 387 (447)
Q Consensus 308 vaEGa~~~~~~~~~~~~~~~D~~Gn~~l~~ig~~L~~~i~~~~~~~~~~~~~~~k~i~~gy~~Rg~~p~~~Dr~~a~~lG 387 (447)
++||+...+ .+.+|++.|++..+. + +++|...|||+|||+.||++||++|++||
T Consensus 625 vaEg~~~~~---------------------~~~~la~~i~~~~~~---~--~e~R~tvLGhiQRGG~Ps~~DR~lAtr~G 678 (787)
T 3o8o_A 625 RNEQASSVY---------------------STQLLADIISEASKG---K--FGVRTAIPGHVQQGGVPSSKDRVTASRFA 678 (787)
T ss_dssp EETTSCSSS---------------------CHHHHHHHHHHHHTT---S--SEEEEEBCGGGGGCSSCCHHHHHHHHHHH
T ss_pred EeCCccCCC---------------------CHHHHHHHHHHHhCC---C--ceeEEecccccccCCCCCHHHHHHHHHHH
Confidence 999985321 145678888776531 1 68999999999999999999999999999
Q ss_pred HHHHHHHHcCC---------------------------------CceEEEEeCCEEEEecHHHHHhh-c--CCCCCChHH
Q 042534 388 HSAIHGVMAGY---------------------------------TGFVSGPINGNYAYIPLEDVAQA-T--NAVNTKDHK 431 (447)
Q Consensus 388 ~~AV~~~~~G~---------------------------------tg~~vg~~~~~~~~vPl~~v~~~-~--k~v~~~~~~ 431 (447)
.+||+++++|. +++|+|+++++++++||+++.+. . +.--|+.+|
T Consensus 679 ~~Av~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iG~~~~~i~~~p~~~~~~~~~d~~~r~~~~~~ 758 (787)
T 3o8o_A 679 VKCIKFIEQWNKKNEASPNTDAKVLRFKFDTHGEKVPTVEHEDDSAAVICVNGSHVSFKPIANLWENETNVELRKGFEVH 758 (787)
T ss_dssp HHHHHHHHHHHHTCC--------------------------CGGGEEEEEEETTEEEEEEHHHHTTSBCTTTTCSBSCCC
T ss_pred HHHHHHHHhCcccccccccccccccccccccccccccccccCCCceEEEEEECCEEEEeeHHHHHhhccchhhCCCcChH
Confidence 99999999876 68999999999999999999853 2 233478999
Q ss_pred HHHHHHh
Q 042534 432 WAWVRTV 438 (447)
Q Consensus 432 w~~~~~~ 438 (447)
|..+++.
T Consensus 759 w~~~~~~ 765 (787)
T 3o8o_A 759 WAEYNKI 765 (787)
T ss_dssp CHHHHHH
T ss_pred HHhHHHH
Confidence 9998876
No 14
>3opy_B 6-phosphofructo-1-kinase beta-subunit; ATP binding, fructose-6-phosphate bindi magnesium binding, citrate binding, ADP binding; HET: ATP; 3.05A {Pichia pastoris}
Probab=100.00 E-value=5.1e-80 Score=682.18 Aligned_cols=329 Identities=19% Similarity=0.254 Sum_probs=286.9
Q ss_pred CCceEEEEccCCCCccHHHHHHHHHHHHHHhcCCeEEEEEcccccccc-cCCCCeEECChhhhhchhccCCccccccCCc
Q 042534 79 KNTRAAIVTCGGLCPGLNTVIRELVVGLWELYGVRQILGIQAGYRGFY-STTRNPLVLNPKMVRGWHKLGGTVLETSRGG 157 (447)
Q Consensus 79 ~~~kiaIvtsGG~~PGlN~vIr~vv~~~~~~~~~~~V~Gi~~G~~GL~-~~~~~~~~L~~~~v~~i~~~GGt~LGssR~~ 157 (447)
+++||||+||||||||||++||++|+++.. ++ .+||||++||+||+ +++ +++|+|++|++|+++|||+|||||+.
T Consensus 570 ~~~rIgIltsGGdapGmNaaIravv~~a~~-~g-~~V~Gi~~G~~GL~~~~~--~~~L~~~~V~~i~~~GGTiLGTsR~~ 645 (941)
T 3opy_B 570 KRKKIAIINVGAPAGGMNSAVYSMATYCMS-RG-HVPYAIHNGFSGLARHES--VRSINWLDIEGWGSLGGSEIGTNRTL 645 (941)
T ss_dssp GCCEEEEEEESSCCTTHHHHHHHHHHHHHH-HT-CEEEEETTHHHHHHHHCC--EEECCTTTTTTGGGCCSCSSCEECCC
T ss_pred cCcEEEEEecCCCcHHHHHHHHHHHHHHHH-CC-CEEEEEccchHhhCcCCc--EEECCHHHHhChhhCCCcEeccCCCC
Confidence 368999999999999999999999998864 56 59999999999999 688 99999999999999999999999985
Q ss_pred c---cHHHHHHHHHHcCCCEEEEecCCCcHHHHHHHHHHHHHcC-CcceEeeecccccccccCcCcccChhhHHHHHHHH
Q 042534 158 F---DLHQIVDAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQRRK-INVGVVGIPKTVDNDVGIIDRSFGFQTAVEMAQQA 233 (447)
Q Consensus 158 ~---~~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~~~~~~~~-~~i~VVgIPkTIDNDi~~tD~s~GFdTAv~~~~~a 233 (447)
+ ++++++++|++++||+||+||||||+++|++|+++.++.+ ++|+||||||||||||++||+|||||||+++++++
T Consensus 646 ~~~~~~~~i~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~~~~~i~vVGIPkTIDNDl~gTD~TiGfdTA~~~i~ea 725 (941)
T 3opy_B 646 PNDADIGMIAYFFEKYGFDGLILVGGFEAFISLHQLERARINYPSLRIPLVLIPATISNNVPGTEYSLGSDTCLNSFMEY 725 (941)
T ss_dssp TTTSCHHHHHHHHHHTTCSEEEEEESHHHHHHHHHHHHGGGTCGGGCSCEEEEEBCSSCCCTTCSCCBTHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHHhcCccCCcEEeeeccccCCCCCCCCCCChHHHHHHHHHH
Confidence 3 6899999999999999999999999999999998655443 67999999999999999999999999999999999
Q ss_pred HHHHHHhhhhcCCcEEEEEecCCccchHHHHHhhccCCccEEecCCCCCCcchhhhHHHHHHHHHh-----hCCcEEEEE
Q 042534 234 ISAAHVEAESAVNGIGLVKLMGRSTGHIALHATLSSRDVDCCLIPEMEFYLEGKGGLVEFLDNRLK-----ENGHAVLVV 308 (447)
Q Consensus 234 i~~i~~~A~S~~~~v~iVevMGR~sG~lAl~aaLA~~~ad~ilIPE~~f~le~~~~l~~~i~~r~~-----~k~~~vIvv 308 (447)
|++++++|.|+|+||||||+|||+|||||++++||+| ||+|||||.||+++.....+++++++++ .+++.+|++
T Consensus 726 id~i~~tA~ssh~RvfiVEvMGR~aG~LAl~agLA~G-Ad~ilIPE~~~~l~~l~~~i~~l~~~~~~~~g~~~~~~iIvv 804 (941)
T 3opy_B 726 CDVIKQSAAATRNRVFVVEVQGGNSGYIATHAQLACG-AQISYVPEEGISLAQLEMDINSLKESFANDQGKTKSGRLILK 804 (941)
T ss_dssp HHHHHHHHHHC-CEEEEEEECSTTCCHHHHHHHHHHT-CSEEECTTTCCCHHHHHHHHHHHHHHHHTCTTSCCCCEEEEE
T ss_pred HHHHHHHhhhcCCcEEEEEeCCcchhHHHHHHHHhhC-CCEEEeCCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEE
Confidence 9999999988899999999999999999999999998 9999999999999953333334444553 234589999
Q ss_pred ecCCCCCCchhhhhhhhcccccCCccccchHHHHHHHHHHHhcccCCCceeEEeEeCCCccccCCCCCHhhHHHHHHHHH
Q 042534 309 AEGAGQNMIPRTAAQTEERDESGNLVFLDVGSWLKTELKKWWARDHPGELFTVKYIDPTYMIRAVPANATDNLYCTLLAH 388 (447)
Q Consensus 309 aEGa~~~~~~~~~~~~~~~D~~Gn~~l~~ig~~L~~~i~~~~~~~~~~~~~~~k~i~~gy~~Rg~~p~~~Dr~~a~~lG~ 388 (447)
+||+...+ .+.+|++.|+++++. + +++|...|||+|||+.||++||++|++||.
T Consensus 805 aEga~~~~---------------------~~~~la~~i~~~~~~---g--~e~R~tvLGHiQRGG~Psa~DRilAtr~G~ 858 (941)
T 3opy_B 805 SENASKVL---------------------TTEVISTIIDDEASG---R--FDSKTAIPGHVQQGGIPSPMDRVRASRFAI 858 (941)
T ss_dssp EGGGCSSS---------------------CHHHHHHHHHHHHTT---S--SEEEEECCCTTTTCSSCCHHHHHHHHHHHH
T ss_pred eCCccCCC---------------------CHHHHHHHHHHHhCC---C--ceeEEccccccccCCCCCHHHHHHHHHHHH
Confidence 99985322 145678888776541 2 789999999999999999999999999999
Q ss_pred HHHHHHHcCC--------------------CceEEEEeCCEEEEecHHHHHhhc---CCCCCChHHHHHHHHh
Q 042534 389 SAIHGVMAGY--------------------TGFVSGPINGNYAYIPLEDVAQAT---NAVNTKDHKWAWVRTV 438 (447)
Q Consensus 389 ~AV~~~~~G~--------------------tg~~vg~~~~~~~~vPl~~v~~~~---k~v~~~~~~w~~~~~~ 438 (447)
+||+++++|+ +++|||+++++++++||+++.+.. +.--|+..||..++..
T Consensus 859 ~Av~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~i~~~pi~e~~~~~~d~~~r~p~~~~w~~~~~~ 931 (941)
T 3opy_B 859 RAVSFIERHSDRCQTFKNSISFRQTDEITSTAVVLGIHKSQLRFTPIRQLYDFESDVPRRMRKNIFWSNVREI 931 (941)
T ss_dssp HHHHHHHHHHHHHHHHHSCSCCCCCHHHHTTEEEEEECC-CEEEEEHHHHHHTSCCTTTTCC-CCSTHHHHHH
T ss_pred HHHHHHHhCCcccccccccccccccccCCCceEEEEEECCEEEEEEHHHHHhhccchhhcCCcchHHHhHHHH
Confidence 9999999998 899999999999999999998643 3334789999998876
No 15
>3o8o_B 6-phosphofructokinase subunit beta; transferase; HET: F6P FDP; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.1e-80 Score=676.03 Aligned_cols=325 Identities=21% Similarity=0.237 Sum_probs=288.4
Q ss_pred CceEEEEccCCCCccHHHHHHHHHHHHHHhcCCeEEEEEccccccccc-CCCCeEECChhhhhchhccCCccccccCCcc
Q 042534 80 NTRAAIVTCGGLCPGLNTVIRELVVGLWELYGVRQILGIQAGYRGFYS-TTRNPLVLNPKMVRGWHKLGGTVLETSRGGF 158 (447)
Q Consensus 80 ~~kiaIvtsGG~~PGlN~vIr~vv~~~~~~~~~~~V~Gi~~G~~GL~~-~~~~~~~L~~~~v~~i~~~GGt~LGssR~~~ 158 (447)
++||||+||||||||||++||++|+++. .+++ +||||++||+||++ +. +.+|+|++|++|+++|||+|||||+.+
T Consensus 393 ~~~IgIltsGGdapGmNaaIravv~~a~-~~g~-~v~Gi~~G~~GL~~~~~--~~~l~~~~v~~i~~~GGt~LGTsR~~~ 468 (766)
T 3o8o_B 393 RLKIAIVNVGAPAGGINSAVYSMATYCM-SQGH-RPYAIYNGWSGLARHES--VRSLNWKDMLGWQSRGGSEIGTNRVTP 468 (766)
T ss_dssp CCEEEEEEESSCCTTHHHHHHHHHHHHH-HHTC-EEEEETTHHHHHHHHCC--EEECCGGGGTTGGGCCSCTTCCCCCCG
T ss_pred CcEEEEEecCCCcHHHHHHHHHHHHHHH-HCCC-EEEEEecChHhhCCCCc--eEECCHHHHhhHhhCCCceEccCCCCC
Confidence 4799999999999999999999999886 4664 99999999999997 66 999999999999999999999999853
Q ss_pred ---cHHHHHHHHHHcCCCEEEEecCCCcHHHHHHHHHHHHHcC-CcceEeeecccccccccCcCcccChhhHHHHHHHHH
Q 042534 159 ---DLHQIVDAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQRRK-INVGVVGIPKTVDNDVGIIDRSFGFQTAVEMAQQAI 234 (447)
Q Consensus 159 ---~~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~~~~~~~~-~~i~VVgIPkTIDNDi~~tD~s~GFdTAv~~~~~ai 234 (447)
++++++++|++++||+||+||||||+++|++|+++.++.+ ++|+||||||||||||++||+|||||||+++++++|
T Consensus 469 ~~~~~~~~~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~~~~~i~vvgiPkTIDNDl~gTD~T~GfdTA~~~~~~ai 548 (766)
T 3o8o_B 469 EEADLGMIAYYFQKYEFDGLIIVGGFEAFESLHQLERARESYPAFRIPMVLIPATLSNNVPGTEYSLGSDTALNALMEYC 548 (766)
T ss_dssp GGGCHHHHHHHHHHHTCSEEEEEESHHHHHHHHHHHTTTTTCGGGCSCCCEEEBCTTCCCSSCSCCBTHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHhCCCEEEEeCCchHHHHHHHHHHHHHhcCccCCcEEeeccccccCCCCCCCCCChhHHHHHHHHHH
Confidence 6899999999999999999999999999999987654433 579999999999999999999999999999999999
Q ss_pred HHHHHhhhhcCCcEEEEEecCCccchHHHHHhhccCCccEEecCCCCCCcchhhhHHHHHH---HHHh-----hCCcEEE
Q 042534 235 SAAHVEAESAVNGIGLVKLMGRSTGHIALHATLSSRDVDCCLIPEMEFYLEGKGGLVEFLD---NRLK-----ENGHAVL 306 (447)
Q Consensus 235 ~~i~~~A~S~~~~v~iVevMGR~sG~lAl~aaLA~~~ad~ilIPE~~f~le~~~~l~~~i~---~r~~-----~k~~~vI 306 (447)
++++++|.|+|+||||||+|||+|||||++++||+| ||+|||||.||+++ ++++.|+ ++++ .+.+.+|
T Consensus 549 d~i~~ta~ss~~rv~iVEvMGR~aG~lAl~aglA~g-a~~ilIPE~~~~~~---~~~~~i~~~~~~~~~~~~~~~~~~ii 624 (766)
T 3o8o_B 549 DVVKQSASSTRGRAFVVDCQGGNSGYLATYASLAVG-AQVSYVPEEGISLE---QLSEDIEYLAQSFEKAEGRGRFGKLI 624 (766)
T ss_dssp HHHHHHHHHHSSEEEEEEECCTTCCHHHHHHHHHHT-CSEEECTTTCCCHH---HHHHHHHHHHHHHHHHTTCTTCCEEE
T ss_pred HHHHHHhhccCCcEEEEEeCCCchhHHHHHHHHhhC-CCEEEeCCCCCCHH---HHHHHHHHHHHHHhhhhccCCCceEE
Confidence 999999988889999999999999999999999998 99999999999999 4666554 3442 2467899
Q ss_pred EEecCCCCCCchhhhhhhhcccccCCccccchHHHHHHHHHHHhcccCCCceeEEeEeCCCccccCCCCCHhhHHHHHHH
Q 042534 307 VVAEGAGQNMIPRTAAQTEERDESGNLVFLDVGSWLKTELKKWWARDHPGELFTVKYIDPTYMIRAVPANATDNLYCTLL 386 (447)
Q Consensus 307 vvaEGa~~~~~~~~~~~~~~~D~~Gn~~l~~ig~~L~~~i~~~~~~~~~~~~~~~k~i~~gy~~Rg~~p~~~Dr~~a~~l 386 (447)
+++||+...+ .+.+|++.|+++.+. + +++|...|||+|||+.||++||++|++|
T Consensus 625 vvaEg~~~~~---------------------~~~~la~~i~~~~~~---~--~e~R~tvLGhiQRGG~Ps~~DR~lAtr~ 678 (766)
T 3o8o_B 625 LKSTNASKAL---------------------SATKLAEVITAEADG---R--FDAKPAYPGHVQQGGLPSPIDRTRATRM 678 (766)
T ss_dssp EEEGGGCSSC---------------------CHHHHHHHHHHHHTT---S--CEEEEEBCGGGGGCSSCCHHHHHHHHHH
T ss_pred EEeCCcCCCC---------------------cHHHHHHHHHHHhCC---C--ceEEEecccccccCCCCCHHHHHHHHHH
Confidence 9999985322 145678888776531 2 7899999999999999999999999999
Q ss_pred HHHHHHHHHcCC----------------------CceEEEEeCCEEEEecHHHHHhh-c--CCCCCChHHHHHHHHh
Q 042534 387 AHSAIHGVMAGY----------------------TGFVSGPINGNYAYIPLEDVAQA-T--NAVNTKDHKWAWVRTV 438 (447)
Q Consensus 387 G~~AV~~~~~G~----------------------tg~~vg~~~~~~~~vPl~~v~~~-~--k~v~~~~~~w~~~~~~ 438 (447)
|.+||+++++|+ +++|||+++++++++||+++.+. . +.--|+.+||..+++.
T Consensus 679 G~~Av~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~i~~~pi~~~~~~~~d~~~r~~~~~~w~~~~~~ 755 (766)
T 3o8o_B 679 AIKAVGFIKDNQAAIAEARAAEENFNADDKTISDTAAVVGVKGSHVVYNSIRQLYDYETEVSMRMPKVIHWQATRLI 755 (766)
T ss_dssp HHHHHHHHHHTSHHHHHHSSSSSTTCCCCHHHHTTSEEEECSSSCCEEEEHHHHHHHTBCGGGSSBSSCSCHHHHHH
T ss_pred HHHHHHHHHhCCcccccccccccccccccccCCCceEEEEEECCEEEEEeHHHHHhhccchhhCCCCChhHHhHHHH
Confidence 999999999999 89999999999999999999853 3 3344789999998876
No 16
>3opy_A 6-phosphofructo-1-kinase alpha-subunit; ATP binding, fructose-6-phosphate bindi magnesium binding, citrate binding, ADP binding; HET: ATP; 3.05A {Pichia pastoris}
Probab=100.00 E-value=1.1e-78 Score=670.01 Aligned_cols=329 Identities=19% Similarity=0.245 Sum_probs=284.0
Q ss_pred CCceEEEEccCCCCccHHHHHHHHHHHHHHhcCCeEEEEEcccccccc-cCCCCeEECChhhhhchhccCCccccccCCc
Q 042534 79 KNTRAAIVTCGGLCPGLNTVIRELVVGLWELYGVRQILGIQAGYRGFY-STTRNPLVLNPKMVRGWHKLGGTVLETSRGG 157 (447)
Q Consensus 79 ~~~kiaIvtsGG~~PGlN~vIr~vv~~~~~~~~~~~V~Gi~~G~~GL~-~~~~~~~~L~~~~v~~i~~~GGt~LGssR~~ 157 (447)
+.+||||+||||||||||++||++|+++. .++ .+||||++||+||+ +++ +++|+|+.|++|+++|||+|||||+.
T Consensus 597 ~~~rIgIltsGGdaPGmNAaIravV~~a~-~~g-~~V~Gi~~G~~GLl~~~~--~~~L~~~~V~~i~~~GGTiLGTsR~~ 672 (989)
T 3opy_A 597 SRLNIAIIHVGAPTSALNPATRVATLNSL-AKG-HRVFAIRNGFAGLIRHGA--VRELNWIDVEDWHNTGGSEIGTNRSL 672 (989)
T ss_dssp GCCEEEEEEESSCCTTHHHHHHHHHHHHH-HTT-CEEEEETTHHHHHHHHCC--EEEECTTTTTTTTTCCSCSSCCBCCC
T ss_pred CCceEEEEecCCCCHHHHHHHHHHHHHHH-HCC-CEEEEEccChhhhcCCCc--EEECCHHHhhCHhhCCCcEeccCCCC
Confidence 35899999999999999999999999885 466 59999999999999 888 99999999999999999999999986
Q ss_pred --ccHHHHHHHHHHcCCCEEEEecCCCcHHHHHHHHHHHHHcC-CcceEeeecccccccccCcCcccChhhHHHHHHHHH
Q 042534 158 --FDLHQIVDAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQRRK-INVGVVGIPKTVDNDVGIIDRSFGFQTAVEMAQQAI 234 (447)
Q Consensus 158 --~~~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~~~~~~~~-~~i~VVgIPkTIDNDi~~tD~s~GFdTAv~~~~~ai 234 (447)
.++++++++|++++||+||+||||||+++|++|+++..+++ ++|+||||||||||||++||+|||||||+++++++|
T Consensus 673 ~~~~~~~i~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~y~~~~I~vVGIPkTIDNDl~gTD~TiGFdTAvn~~~eaI 752 (989)
T 3opy_A 673 PSDDMGTVAYYFQQYKFDGLIIIGGFEAFTALYELDAARAQYPIFNIPMCCLPATVSNNVPGTEYSLGSDTCLNTLSGYC 752 (989)
T ss_dssp GGGGHHHHHHHHHHHTCSEEEEEESHHHHHHHHHHHHHTTTCGGGCSCEEEEEBCSSCCCTTCSCCBTHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHhhCCCcCCcEEeccccccCCCCCCcCCCChHHHHHHHHHHH
Confidence 36899999999999999999999999999999998755543 589999999999999999999999999999999999
Q ss_pred HHHHHhhhhcCCcEEEEEecCCccchHHHHHhhccCCccEEecCCCCCCcchhhhHHHHHHHHHh-----hCCcEEEEEe
Q 042534 235 SAAHVEAESAVNGIGLVKLMGRSTGHIALHATLSSRDVDCCLIPEMEFYLEGKGGLVEFLDNRLK-----ENGHAVLVVA 309 (447)
Q Consensus 235 ~~i~~~A~S~~~~v~iVevMGR~sG~lAl~aaLA~~~ad~ilIPE~~f~le~~~~l~~~i~~r~~-----~k~~~vIvva 309 (447)
++++.+|.|+|+||||||+|||+|||||++++||+| ||+|||||+||+++.....+++++++++ .++++|||||
T Consensus 753 d~i~~tA~ssh~RvfIVEVMGR~aG~LAl~agLA~G-Ad~ilIPE~~f~l~~l~~~i~~l~~~~~~~~g~~~~~~IIvva 831 (989)
T 3opy_A 753 DAVKQSASASRRRTFVVEVQGGYSGYLASYAGLITG-ALAVYTPENPINLQTVQEDIELLTRTYEEDDGKNRSGKIFIHN 831 (989)
T ss_dssp HHHHHHTC-CCCSEEEEEECCTTCSHHHHHHHHHHT-CSCEECTTSCCCHHHHHHHHHHHHHHHTTCC---CCCEEEEEE
T ss_pred HHHHHHHHhcCCcEEEEEeCCcchhHHHHHHHHhcC-CCEEEeCCCCCCHHHHHHHHHHHHHHHHHhccCCccceEEEEe
Confidence 999999998899999999999999999999999998 9999999999999953333344445553 1356899999
Q ss_pred cCCCCCCchhhhhhhhcccccCCccccchHHHHHHHHHHHhcccCCCceeEEeEeCCCccccCCCCCHhhHHHHHHHHHH
Q 042534 310 EGAGQNMIPRTAAQTEERDESGNLVFLDVGSWLKTELKKWWARDHPGELFTVKYIDPTYMIRAVPANATDNLYCTLLAHS 389 (447)
Q Consensus 310 EGa~~~~~~~~~~~~~~~D~~Gn~~l~~ig~~L~~~i~~~~~~~~~~~~~~~k~i~~gy~~Rg~~p~~~Dr~~a~~lG~~ 389 (447)
||+...+ -+.+|+++|++..+. .+.+|...|||+||||.||++||++|++||.+
T Consensus 832 Ega~~~~---------------------~~~~la~~i~e~~~~-----~~e~R~tvLGHiQRGG~Psa~DRilAtr~G~~ 885 (989)
T 3opy_A 832 EKASKVY---------------------TTDLIAAIIGEAGKG-----RFESRTAVPGHVQQGKSPSSIDRVNACRLAIK 885 (989)
T ss_dssp SSSCSSS---------------------CHHHHHHHHHHTTTT-----TSCEEEECCGGGGGCSSCCHHHHHHHHHHHHH
T ss_pred CCCcCCC---------------------CHHHHHHHHHHhcCC-----CceeEecccccccCCCCCCHHHHHHHHHHHHH
Confidence 9985432 145678888765431 16889999999999999999999999999999
Q ss_pred HHHHHHcCC---------------------------------------CceEEEEeCCEEEEecHHHHHh-hc--CCCCC
Q 042534 390 AIHGVMAGY---------------------------------------TGFVSGPINGNYAYIPLEDVAQ-AT--NAVNT 427 (447)
Q Consensus 390 AV~~~~~G~---------------------------------------tg~~vg~~~~~~~~vPl~~v~~-~~--k~v~~ 427 (447)
||++++++. +.+++|+++.++.+.|+.++.. .. +.--|
T Consensus 886 Ave~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~~~~~~~~~~l~~~~~d~~~r~p 965 (989)
T 3opy_A 886 CCNFIEDANFQVKHNANLSADERHLRFFYDDGVKTSAVSGKSSVIDDNTSVVIGIQGSEVTFTPVKQLWENETHHKWRKG 965 (989)
T ss_dssp HHHHHTCGGGSCCSBSCCCHHHHHHTEEEETTEEEETTTCSSCCCCGGGEEEEEEETTEEEEEEHHHHHHHSCTTTC---
T ss_pred HHHHHHccccccccccccccccccccccccccccccccccccccCCCCcEEEEEEECCEEEEEEHHHhhhhccchhhCCC
Confidence 999999876 3568999999999999999953 33 23347
Q ss_pred ChHHHHHHHHh
Q 042534 428 KDHKWAWVRTV 438 (447)
Q Consensus 428 ~~~~w~~~~~~ 438 (447)
+..||..+++.
T Consensus 966 ~~~~W~~~~~~ 976 (989)
T 3opy_A 966 KNVHWEQLNIV 976 (989)
T ss_dssp -CCCCHHHHHH
T ss_pred cChHHHhHHHH
Confidence 88999998876
No 17
>2an1_A Putative kinase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, transferase; 2.00A {Salmonella typhimurium}
Probab=95.75 E-value=0.0083 Score=58.37 Aligned_cols=90 Identities=21% Similarity=0.197 Sum_probs=51.8
Q ss_pred CceEEEEccCCCCccHHHHHHHHHHHHHHhcCCeEEEEEcccccccccCCCCeEECChhhhhchhccCCccccccCCccc
Q 042534 80 NTRAAIVTCGGLCPGLNTVIRELVVGLWELYGVRQILGIQAGYRGFYSTTRNPLVLNPKMVRGWHKLGGTVLETSRGGFD 159 (447)
Q Consensus 80 ~~kiaIvtsGG~~PGlN~vIr~vv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~~~L~~~~v~~i~~~GGt~LGssR~~~~ 159 (447)
++|++|++-.+ .+..+..++.+.+.+. .+|+ +++.......++-. .+. . .+.
T Consensus 5 mkki~ii~np~-~~~~~~~~~~i~~~l~-~~g~-~v~~~~~~~~~~~~-------------------~~~----~--~~~ 56 (292)
T 2an1_A 5 FKCIGIVGHPR-HPTALTTHEMLYRWLC-DQGY-EVIVEQQIAHELQL-------------------KNV----P--TGT 56 (292)
T ss_dssp CCEEEEECC--------CHHHHHHHHHH-HTTC-EEEEEHHHHHHTTC-------------------SSC----C--EEC
T ss_pred CcEEEEEEcCC-CHHHHHHHHHHHHHHH-HCCC-EEEEecchhhhccc-------------------ccc----c--ccc
Confidence 47899998765 4778888999988874 5665 66654433222100 010 0 011
Q ss_pred HHHHHHHHHHcCCCEEEEecCCCcHHHHHHHHHHHHHcCCcceEeeec
Q 042534 160 LHQIVDAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGIP 207 (447)
Q Consensus 160 ~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVgIP 207 (447)
.+. ...+.|.+|++|||||+..|..... +.+++++|||
T Consensus 57 ~~~-----~~~~~D~vi~~GGDGT~l~a~~~~~-----~~~~P~lGI~ 94 (292)
T 2an1_A 57 LAE-----IGQQADLAVVVGGDGNMLGAARTLA-----RYDINVIGIN 94 (292)
T ss_dssp HHH-----HHHHCSEEEECSCHHHHHHHHHHHT-----TSSCEEEEBC
T ss_pred hhh-----cccCCCEEEEEcCcHHHHHHHHHhh-----cCCCCEEEEE
Confidence 222 2346899999999999887764322 1368899998
No 18
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=94.78 E-value=1.1 Score=42.21 Aligned_cols=174 Identities=8% Similarity=-0.009 Sum_probs=95.4
Q ss_pred CCceEEEEccCCCCccHHHHHHHHHHHHHHhcCCeEEEEEcccccccccCCCCeEECChhhhhchhccCCccccccCCc-
Q 042534 79 KNTRAAIVTCGGLCPGLNTVIRELVVGLWELYGVRQILGIQAGYRGFYSTTRNPLVLNPKMVRGWHKLGGTVLETSRGG- 157 (447)
Q Consensus 79 ~~~kiaIvtsGG~~PGlN~vIr~vv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~~~L~~~~v~~i~~~GGt~LGssR~~- 157 (447)
+.++|++++....-|=...++.++-+.+. .+|+. +.-+ ..+...
T Consensus 3 ~~~~I~~i~~~~~~~~~~~~~~gi~~~a~-~~g~~-~~~~---------------------------------~~~~~~~ 47 (305)
T 3g1w_A 3 LNETYMMITFQSGMDYWKRCLKGFEDAAQ-ALNVT-VEYR---------------------------------GAAQYDI 47 (305)
T ss_dssp --CEEEEEESSTTSTHHHHHHHHHHHHHH-HHTCE-EEEE---------------------------------ECSSSCH
T ss_pred CCceEEEEEccCCChHHHHHHHHHHHHHH-HcCCE-EEEe---------------------------------CCCcCCH
Confidence 35789999998889999999999998885 45542 2210 111111
Q ss_pred ccHHHHHHHHHHcCCCEEEEecCCCcHHHHHHHHHHHHHcCCcceEeeecccccccccCc--CcccChhhHHHHHHHHHH
Q 042534 158 FDLHQIVDAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGIPKTVDNDVGII--DRSFGFQTAVEMAQQAIS 235 (447)
Q Consensus 158 ~~~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVgIPkTIDNDi~~t--D~s~GFdTAv~~~~~ai~ 235 (447)
....+.++.+.+.++|++++.+.+.+.. ....+.+.+. +++||.+ |++++.. ..++++|-. +.+..+.+
T Consensus 48 ~~~~~~i~~l~~~~vdgiIi~~~~~~~~--~~~~~~~~~~--~iPvV~~----~~~~~~~~~~~~V~~d~~-~~g~~~~~ 118 (305)
T 3g1w_A 48 QEQITVLEQAIAKNPAGIAISAIDPVEL--TDTINKAVDA--GIPIVLF----DSGAPDSHAHSFLGTNNY-NAGMNAAY 118 (305)
T ss_dssp HHHHHHHHHHHHHCCSEEEECCSSTTTT--HHHHHHHHHT--TCCEEEE----SSCCTTSCCSCEEECCHH-HHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCEEEEcCCCHHHH--HHHHHHHHHC--CCcEEEE----CCCCCCCceeEEECcCHH-HHHHHHHH
Confidence 2345778888889999999998776521 1122333333 5677754 5555432 345666642 23333444
Q ss_pred HHHHhhhhcCCcEEEEEecC------CccchHHHHHhhccCCccEEecCCCCCCcchhhhHHHHHHHHHhhC
Q 042534 236 AAHVEAESAVNGIGLVKLMG------RSTGHIALHATLSSRDVDCCLIPEMEFYLEGKGGLVEFLDNRLKEN 301 (447)
Q Consensus 236 ~i~~~A~S~~~~v~iVevMG------R~sG~lAl~aaLA~~~ad~ilIPE~~f~le~~~~l~~~i~~r~~~k 301 (447)
.+...... |++|.++--.+ |..||..+.....- ..+...+.+..++.+ .-.+.+++.++.+
T Consensus 119 ~l~~~~~g-~~~i~~i~~~~~~~~~~R~~gf~~~l~~~~~-~~~~~~~~~~~~~~~---~~~~~~~~~l~~~ 185 (305)
T 3g1w_A 119 KMAELLDG-EGEVAVITLPNQLNHQERTTGFKETLEAEFP-AIEVIAVEDGRGDSL---HSRRVAHQLLEDY 185 (305)
T ss_dssp HHHHHTTT-CEEEEEEECTTCHHHHHHHHHHHHHHHHHCT-TEEEEEEEECTTCHH---HHHHHHHHHHHHC
T ss_pred HHHHHhCC-CcEEEEEeCCCcccHHHHHHHHHHHHHhhCC-CCEEEEEecCCCCHH---HHHHHHHHHHHhC
Confidence 44433224 67888886433 33455543332211 234444444445444 3445555555554
No 19
>2i2c_A Probable inorganic polyphosphate/ATP-NAD kinase 1; NADP bound of lmnadk1, transferase; HET: DTA PG4; 1.85A {Listeria monocytogenes egd-e} PDB: 2i1w_A* 2i2a_A* 2i2b_A* 2i29_A* 2i2d_A* 2i2e_A* 3v7u_A* 3v7w_A* 3v7y_A* 3v80_A* 3v8m_A* 3v8n_A* 3v8p_A* 4dy6_A* 2i2f_A* 2q5f_A* 3v8q_A* 3v8r_A*
Probab=93.27 E-value=0.035 Score=53.65 Aligned_cols=46 Identities=24% Similarity=0.384 Sum_probs=32.0
Q ss_pred HHHHHHHHHHcC-------CCEEEEecCCCcHHHHHHHHHHHHHcCCcceEeeecc
Q 042534 160 LHQIVDAIQTNA-------FNQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGIPK 208 (447)
Q Consensus 160 ~~~iv~~l~~~~-------Id~L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVgIPk 208 (447)
.+++.+.|++++ .|.+|++|||||+..|..... ....+++++|||-
T Consensus 17 ~~~l~~~l~~~g~~v~~~~~D~vv~lGGDGT~l~aa~~~~---~~~~~~PilGIn~ 69 (272)
T 2i2c_A 17 RLNMIAGFGEYDMEYDDVEPEIVISIGGDGTFLSAFHQYE---ERLDEIAFIGIHT 69 (272)
T ss_dssp HHHHHHHHTTSSCEECSSSCSEEEEEESHHHHHHHHHHTG---GGTTTCEEEEEES
T ss_pred HHHHHHHHHHCCCEeCCCCCCEEEEEcCcHHHHHHHHHHh---hcCCCCCEEEEeC
Confidence 355666677665 499999999999887654421 1112689999974
No 20
>1z0s_A Probable inorganic polyphosphate/ATP-NAD kinase; ATP-binding, structural genomics, NADP, PSI, protein structure initiative; HET: ATP; 1.70A {Archaeoglobus fulgidus} SCOP: e.52.1.1 PDB: 1z0u_A* 1z0z_A* 1suw_A*
Probab=93.13 E-value=0.025 Score=55.38 Aligned_cols=64 Identities=22% Similarity=0.368 Sum_probs=45.0
Q ss_pred HHHHHHHHHHc---------------CCCEEEEecCCCcHHHHHHHHHHHHHcCCcceEeeecccccccccCcCcccChh
Q 042534 160 LHQIVDAIQTN---------------AFNQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGIPKTVDNDVGIIDRSFGFQ 224 (447)
Q Consensus 160 ~~~iv~~l~~~---------------~Id~L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVgIPkTIDNDi~~tD~s~GFd 224 (447)
.+++.+.|+++ +.|.+|++|||||+-.|.+... +. ++|+||.. -++||-
T Consensus 42 ~~~l~~~L~~~g~~v~~~~~~~~~~~~~DlvIvlGGDGT~L~aa~~~~-----~~-~PilGIN~----------G~lGFL 105 (278)
T 1z0s_A 42 VKRIEEALKRLEVEVELFNQPSEELENFDFIVSVGGDGTILRILQKLK-----RC-PPIFGINT----------GRVGLL 105 (278)
T ss_dssp HHHHHHHHHHTTCEEEEESSCCGGGGGSSEEEEEECHHHHHHHHTTCS-----SC-CCEEEEEC----------SSSCTT
T ss_pred HHHHHHHHHHCCCEEEEccccccccCCCCEEEEECCCHHHHHHHHHhC-----CC-CcEEEECC----------CCCccc
Confidence 67777777776 4588999999999966554321 23 89999974 378888
Q ss_pred hHH--HHHHHHHHHHHH
Q 042534 225 TAV--EMAQQAISAAHV 239 (447)
Q Consensus 225 TAv--~~~~~ai~~i~~ 239 (447)
|.+ +.+.++++++..
T Consensus 106 t~~~~~~~~~~l~~l~~ 122 (278)
T 1z0s_A 106 THASPENFEVELKKAVE 122 (278)
T ss_dssp CCBBTTBCHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHh
Confidence 765 445556666654
No 21
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis}
Probab=89.23 E-value=7.7 Score=35.92 Aligned_cols=182 Identities=11% Similarity=-0.006 Sum_probs=97.0
Q ss_pred CCceEEEEccCC-CCccHHHHHHHHHHHHHHhcCCeEEEEEcccccccccCCCCeEECChhhhhchhccCCccccccCCc
Q 042534 79 KNTRAAIVTCGG-LCPGLNTVIRELVVGLWELYGVRQILGIQAGYRGFYSTTRNPLVLNPKMVRGWHKLGGTVLETSRGG 157 (447)
Q Consensus 79 ~~~kiaIvtsGG-~~PGlN~vIr~vv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~~~L~~~~v~~i~~~GGt~LGssR~~ 157 (447)
+..+||++...- .-|=...++.++-+.+.+..|..-++-. ...+...
T Consensus 7 ~~~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~~g~~~~~~~--------------------------------~~~~~~~ 54 (304)
T 3gbv_A 7 KKYTFACLLPKHLEGEYWTDVQKGIREAVTTYSDFNISANI--------------------------------THYDPYD 54 (304)
T ss_dssp CCEEEEEEEECCCTTSHHHHHHHHHHHHHHHTGGGCEEEEE--------------------------------EEECSSC
T ss_pred CcceEEEEecCCCCchHHHHHHHHHHHHHHHHHhCCeEEEE--------------------------------EcCCCCC
Confidence 346799999877 7888999999998887542132111100 0001111
Q ss_pred -ccHHHHHHHHHHcCCCEEEEecCCCcH-HHHHHHHHHHHHcCCcceEeeecccccccccCc--CcccChhh--HHHHHH
Q 042534 158 -FDLHQIVDAIQTNAFNQVYIIGGDGTM-RGAVEIFDEIQRRKINVGVVGIPKTVDNDVGII--DRSFGFQT--AVEMAQ 231 (447)
Q Consensus 158 -~~~~~iv~~l~~~~Id~L~vIGGdgS~-~~A~~L~~~~~~~~~~i~VVgIPkTIDNDi~~t--D~s~GFdT--Av~~~~ 231 (447)
....+.++.|...++|++++.+-+... .. +.+.+.+. +|+||.+ |++++.. ..++++|- +...++
T Consensus 55 ~~~~~~~i~~l~~~~vdgiii~~~~~~~~~~---~~~~~~~~--~iPvV~~----~~~~~~~~~~~~V~~D~~~~g~~a~ 125 (304)
T 3gbv_A 55 YNSFVATSQAVIEEQPDGVMFAPTVPQYTKG---FTDALNEL--GIPYIYI----DSQIKDAPPLAFFGQNSHQSGYFAA 125 (304)
T ss_dssp HHHHHHHHHHHHTTCCSEEEECCSSGGGTHH---HHHHHHHH--TCCEEEE----SSCCTTSCCSEEEECCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCEEEECCCChHHHHH---HHHHHHHC--CCeEEEE----eCCCCCCCceEEEecChHHHHHHHH
Confidence 224567888899999999999887542 22 22333333 4667754 4444432 23455543 333333
Q ss_pred HHHHHHHHhhhhcCCcEEEEEe-----------cCCccchHHHHHhhccCCccEEecCCCCCCcchhhhHHHHHHHHHhh
Q 042534 232 QAISAAHVEAESAVNGIGLVKL-----------MGRSTGHIALHATLSSRDVDCCLIPEMEFYLEGKGGLVEFLDNRLKE 300 (447)
Q Consensus 232 ~ai~~i~~~A~S~~~~v~iVev-----------MGR~sG~lAl~aaLA~~~ad~ilIPE~~f~le~~~~l~~~i~~r~~~ 300 (447)
+ .+...... .++|.++-. .-|..||..+.....- ..+...+.+..++.+ .-.+.+++.++.
T Consensus 126 ~---~l~~~g~~-~~~i~~i~~~~~g~~~~~~~~~R~~gf~~~l~~~g~-~~~~~~~~~~~~~~~---~~~~~~~~~l~~ 197 (304)
T 3gbv_A 126 R---MLMLLAVN-DREIVIFRKIHEGVIGSNQQESREIGFRQYMQEHHP-ACNILELNLHADLNI---EDSRMLDDFFRE 197 (304)
T ss_dssp H---HHHHHSTT-CSEEEEEEEEBTTBCCCHHHHHHHHHHHHHHHHHCT-TSEEEEEEEESSCSS---CHHHHHHHHHHH
T ss_pred H---HHHHHhCC-CCeEEEEEecccCCccchhHHHHHHHHHHHHHhhCC-CcEEEEeeecCCCHH---HHHHHHHHHHHh
Confidence 3 33222211 278888852 3466677765443322 244444444445554 344555555554
Q ss_pred C--CcEEEEEe
Q 042534 301 N--GHAVLVVA 309 (447)
Q Consensus 301 k--~~~vIvva 309 (447)
+ --+|++.+
T Consensus 198 ~~~~~ai~~~~ 208 (304)
T 3gbv_A 198 HPDVKHGITFN 208 (304)
T ss_dssp CTTCCEEEESS
T ss_pred CCCeEEEEEcC
Confidence 3 24555444
No 22
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=88.00 E-value=8.8 Score=35.41 Aligned_cols=129 Identities=5% Similarity=-0.000 Sum_probs=75.2
Q ss_pred CCceEEEEccCCCCccHHHHHHHHHHHHHHhcCCeEEEEEcccccccccCCCCeEECChhhhhchhccCCccccccCCcc
Q 042534 79 KNTRAAIVTCGGLCPGLNTVIRELVVGLWELYGVRQILGIQAGYRGFYSTTRNPLVLNPKMVRGWHKLGGTVLETSRGGF 158 (447)
Q Consensus 79 ~~~kiaIvtsGG~~PGlN~vIr~vv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~~~L~~~~v~~i~~~GGt~LGssR~~~ 158 (447)
+..+||++...-.-|-...++.++.+.+. .+|+. +.-+ -+.....
T Consensus 4 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~-~~g~~-~~~~---------------------------------~~~~~~~ 48 (291)
T 3l49_A 4 EGKTIGITAIGTDHDWDLKAYQAQIAEIE-RLGGT-AIAL---------------------------------DAGRNDQ 48 (291)
T ss_dssp TTCEEEEEESCCSSHHHHHHHHHHHHHHH-HTTCE-EEEE---------------------------------ECTTCHH
T ss_pred CCcEEEEEeCCCCChHHHHHHHHHHHHHH-HcCCE-EEEE---------------------------------cCCCCHH
Confidence 45679999988778888888999988874 45542 2110 0111112
Q ss_pred cHHHHHHHHHHcCCCEEEEecCCCcHHHHHHHHHHHHHcCCcceEeeecccccccccCcCcccChhhHHHHHHHHHHHHH
Q 042534 159 DLHQIVDAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGIPKTVDNDVGIIDRSFGFQTAVEMAQQAISAAH 238 (447)
Q Consensus 159 ~~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVgIPkTIDNDi~~tD~s~GFdTAv~~~~~ai~~i~ 238 (447)
...+.++.+...++|++++.+.+.+... ...+.+.+. +++||.+= ++.+....++++|-. +.+..+.+.+.
T Consensus 49 ~~~~~~~~l~~~~vdgiIi~~~~~~~~~--~~~~~~~~~--~iPvV~~~----~~~~~~~~~V~~D~~-~~g~~~~~~l~ 119 (291)
T 3l49_A 49 TQVSQIQTLIAQKPDAIIEQLGNLDVLN--PWLQKINDA--GIPLFTVD----TATPHAINNTTSNNY-SIGAELALQMV 119 (291)
T ss_dssp HHHHHHHHHHHHCCSEEEEESSCHHHHH--HHHHHHHHT--TCCEEEES----CCCTTCSEEEEECHH-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCEEEEeCCChhhhH--HHHHHHHHC--CCcEEEec----CCCCCcCceEecChH-HHHHHHHHHHH
Confidence 3467788888999999999988743222 223444444 46677653 333332335555542 22333344444
Q ss_pred HhhhhcCCcEEEEE
Q 042534 239 VEAESAVNGIGLVK 252 (447)
Q Consensus 239 ~~A~S~~~~v~iVe 252 (447)
..... |++|.++.
T Consensus 120 ~~~~g-~~~i~~i~ 132 (291)
T 3l49_A 120 ADLGG-KGNVLVFN 132 (291)
T ss_dssp HHHTT-CEEEEEEC
T ss_pred HHcCC-CceEEEEe
Confidence 33344 67888883
No 23
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=87.34 E-value=19 Score=33.67 Aligned_cols=171 Identities=9% Similarity=0.071 Sum_probs=92.4
Q ss_pred CceEEEEccCCCCccHHHHHHHHHHHHHHhcCCeEEEEEcccccccccCCCCeEECChhhhhchhccCCccccccCCccc
Q 042534 80 NTRAAIVTCGGLCPGLNTVIRELVVGLWELYGVRQILGIQAGYRGFYSTTRNPLVLNPKMVRGWHKLGGTVLETSRGGFD 159 (447)
Q Consensus 80 ~~kiaIvtsGG~~PGlN~vIr~vv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~~~L~~~~v~~i~~~GGt~LGssR~~~~ 159 (447)
+.+||++...-.-|-...++.++-+.+. .+|+. +.-. .+......
T Consensus 2 ~~~Igvi~~~~~~~~~~~~~~gi~~~a~-~~g~~-~~~~---------------------------------~~~~~~~~ 46 (313)
T 3m9w_A 2 EVKIGMAIDDLRLERWQKDRDIFVKKAE-SLGAK-VFVQ---------------------------------SANGNEET 46 (313)
T ss_dssp -CEEEEEESCCSSSTTHHHHHHHHHHHH-HTSCE-EEEE---------------------------------ECTTCHHH
T ss_pred CcEEEEEeCCCCChHHHHHHHHHHHHHH-HcCCE-EEEE---------------------------------CCCCCHHH
Confidence 4679999988888999999999988874 45542 2210 01111123
Q ss_pred HHHHHHHHHHcCCCEEEEecCCCcHHHHHHHHHHHHHcCCcceEeeecccccccccCc--CcccChhhHHHHHHHHHHHH
Q 042534 160 LHQIVDAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGIPKTVDNDVGII--DRSFGFQTAVEMAQQAISAA 237 (447)
Q Consensus 160 ~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVgIPkTIDNDi~~t--D~s~GFdTAv~~~~~ai~~i 237 (447)
..+.++.+...++|++++.+-+.+.. ....+.+.+. +|+||.+ |++++.. +.++++|-. +.+..+.+.+
T Consensus 47 ~~~~i~~l~~~~vdgiIi~~~~~~~~--~~~~~~~~~~--~iPvV~~----~~~~~~~~~~~~V~~D~~-~~g~~a~~~L 117 (313)
T 3m9w_A 47 QMSQIENMINRGVDVLVIIPYNGQVL--SNVVKEAKQE--GIKVLAY----DRMINDADIDFYISFDNE-KVGELQAKAL 117 (313)
T ss_dssp HHHHHHHHHHTTCSEEEEECSSTTSC--HHHHHHHHTT--TCEEEEE----SSCCTTSCCSEEEEECHH-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCEEEEeCCChhhh--HHHHHHHHHC--CCeEEEE----CCcCCCCCceEEEecCHH-HHHHHHHHHH
Confidence 45778888899999999999876531 1122233333 5778765 5554433 346776642 2222333333
Q ss_pred HHhhhhcCCcEEEEEe-cC------CccchHHHHHhhccCCccEEecCCC---CCCcchhhhHHHHHHHHHhh
Q 042534 238 HVEAESAVNGIGLVKL-MG------RSTGHIALHATLSSRDVDCCLIPEM---EFYLEGKGGLVEFLDNRLKE 300 (447)
Q Consensus 238 ~~~A~S~~~~v~iVev-MG------R~sG~lAl~aaLA~~~ad~ilIPE~---~f~le~~~~l~~~i~~r~~~ 300 (447)
... .. +++|.++-- .+ |..||..+...... ..++.++++. .++.+ .-.+.+++.++.
T Consensus 118 ~~~-~G-~~~i~~i~g~~~~~~~~~R~~Gf~~~l~~~~~-~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~ 184 (313)
T 3m9w_A 118 VDI-VP-QGNYFLMGGSPVDNNAKLFRAGQMKVLKPYVD-SGKIKVVGDQWVDGWLPE---NALKIMENALTA 184 (313)
T ss_dssp HHH-CS-SEEEEEEESCTTCHHHHHHHHHHHHHHHHHHH-TTSEEEEEEEECGGGCHH---HHHHHHHHHHHH
T ss_pred HHh-CC-CCcEEEEECCCCCccHHHHHHHHHHHHHhhcc-CCCEEEEeeccCCCcCHH---HHHHHHHHHHHh
Confidence 311 33 567887742 22 45566654433311 1344444332 23333 344555555554
No 24
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=87.12 E-value=15 Score=33.72 Aligned_cols=123 Identities=12% Similarity=0.035 Sum_probs=73.7
Q ss_pred CCceEEEEccC-----CCCccHHHHHHHHHHHHHHhcCCeEEEEEcccccccccCCCCeEECChhhhhchhccCCccccc
Q 042534 79 KNTRAAIVTCG-----GLCPGLNTVIRELVVGLWELYGVRQILGIQAGYRGFYSTTRNPLVLNPKMVRGWHKLGGTVLET 153 (447)
Q Consensus 79 ~~~kiaIvtsG-----G~~PGlN~vIr~vv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~~~L~~~~v~~i~~~GGt~LGs 153 (447)
+..+||+++.. -.-|-...++.++.+.+. .+|+ ++.- ..
T Consensus 7 ~~~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~-~~g~-~~~~----------------------------------~~ 50 (292)
T 3k4h_A 7 TTKTLGLVMPSSASKAFQNPFFPEVIRGISSFAH-VEGY-ALYM----------------------------------ST 50 (292)
T ss_dssp CCCEEEEECSSCHHHHTTSTHHHHHHHHHHHHHH-HTTC-EEEE----------------------------------CC
T ss_pred CCCEEEEEecCCccccccCHHHHHHHHHHHHHHH-HcCC-EEEE----------------------------------Ee
Confidence 34679999988 778889999999988874 4554 2210 01
Q ss_pred cCCc-ccHHHHHHHHHHcCCCEEEEecCCCcHHHHHHHHHHHHHcCCcceEeeecccccccccCc--CcccChhh--HHH
Q 042534 154 SRGG-FDLHQIVDAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGIPKTVDNDVGII--DRSFGFQT--AVE 228 (447)
Q Consensus 154 sR~~-~~~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVgIPkTIDNDi~~t--D~s~GFdT--Av~ 228 (447)
+... ....++++.+...++|++++.+.+.+-.. .+.+.+. +++||.+ |++.+.. -.++++|- +..
T Consensus 51 ~~~~~~~~~~~~~~~~~~~vdgiIi~~~~~~~~~----~~~l~~~--~iPvV~~----~~~~~~~~~~~~V~~D~~~~g~ 120 (292)
T 3k4h_A 51 GETEEEIFNGVVKMVQGRQIGGIILLYSRENDRI----IQYLHEQ--NFPFVLI----GKPYDRKDEITYVDNDNYTAAR 120 (292)
T ss_dssp CCSHHHHHHHHHHHHHTTCCCEEEESCCBTTCHH----HHHHHHT--TCCEEEE----SCCSSCTTTSCEEECCHHHHHH
T ss_pred CCCCHHHHHHHHHHHHcCCCCEEEEeCCCCChHH----HHHHHHC--CCCEEEE----CCCCCCCCCCCEEEECcHHHHH
Confidence 1111 12467888899999999999988765432 2333344 5667754 5554432 23455443 333
Q ss_pred HHHHHHHHHHHhhhhcCCcEEEEEe
Q 042534 229 MAQQAISAAHVEAESAVNGIGLVKL 253 (447)
Q Consensus 229 ~~~~ai~~i~~~A~S~~~~v~iVev 253 (447)
.+++.+ .. .. |++|.++--
T Consensus 121 ~a~~~L---~~--~G-~~~i~~i~~ 139 (292)
T 3k4h_A 121 EVAEYL---IS--LG-HKQIAFIGG 139 (292)
T ss_dssp HHHHHH---HH--TT-CCCEEEEES
T ss_pred HHHHHH---HH--CC-CceEEEEeC
Confidence 333332 22 24 678888753
No 25
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=84.01 E-value=31 Score=33.08 Aligned_cols=166 Identities=14% Similarity=0.048 Sum_probs=88.9
Q ss_pred ceEEEEccCCCCccHHHHHHHHHHHHHHhcCCeEEEEEcccccccccCCCCeEECChhhhhchhccCCccccccCCc-cc
Q 042534 81 TRAAIVTCGGLCPGLNTVIRELVVGLWELYGVRQILGIQAGYRGFYSTTRNPLVLNPKMVRGWHKLGGTVLETSRGG-FD 159 (447)
Q Consensus 81 ~kiaIvtsGG~~PGlN~vIr~vv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~~~L~~~~v~~i~~~GGt~LGssR~~-~~ 159 (447)
..||+++..-.-|-...++.++-..+. .+|+. +.- ..+... ..
T Consensus 71 ~~Igvi~~~~~~~~~~~~~~gi~~~a~-~~g~~-~~~----------------------------------~~~~~~~~~ 114 (355)
T 3e3m_A 71 GFVGLLLPSLNNLHFAQTAQSLTDVLE-QGGLQ-LLL----------------------------------GYTAYSPER 114 (355)
T ss_dssp CEEEEEESCSBCHHHHHHHHHHHHHHH-HTTCE-EEE----------------------------------EECTTCHHH
T ss_pred CEEEEEeCCCCchHHHHHHHHHHHHHH-HCCCE-EEE----------------------------------EeCCCChHH
Confidence 569999987777888888888888774 45542 211 111111 12
Q ss_pred HHHHHHHHHHcCCCEEEEecCCCcHHHHHHHHHHHHHcCCcceEeeeccccccccc-CcCcccChhhHHHHHHHHHHHHH
Q 042534 160 LHQIVDAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGIPKTVDNDVG-IIDRSFGFQTAVEMAQQAISAAH 238 (447)
Q Consensus 160 ~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVgIPkTIDNDi~-~tD~s~GFdTAv~~~~~ai~~i~ 238 (447)
..++++.|...++|++++.+.+.+.... +.+.+. +++||.+ |+... ....++++|- ...+..+.+.+.
T Consensus 115 ~~~~~~~l~~~~vdGiI~~~~~~~~~~~----~~l~~~--~iPvV~i----~~~~~~~~~~~V~~D~-~~~~~~a~~~L~ 183 (355)
T 3e3m_A 115 EEQLVETMLRRRPEAMVLSYDGHTEQTI----RLLQRA--SIPIVEI----WEKPAHPIGHTVGFSN-ERAAYDMTNALL 183 (355)
T ss_dssp HHHHHHHHHHTCCSEEEEECSCCCHHHH----HHHHHC--CSCEEEE----SSCCSSCSSEEEECCH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCEEEEeCCCCCHHHH----HHHHhC--CCCEEEE----CCccCCCCCCEEEeCh-HHHHHHHHHHHH
Confidence 4577888899999999999987764322 333344 5667765 22111 1123555543 122223333333
Q ss_pred HhhhhcCCcEEEEEec--------CCccchHHHHHhhccCCcc-EEecCCCCCCcchhhhHHHHHHHHHhh
Q 042534 239 VEAESAVNGIGLVKLM--------GRSTGHIALHATLSSRDVD-CCLIPEMEFYLEGKGGLVEFLDNRLKE 300 (447)
Q Consensus 239 ~~A~S~~~~v~iVevM--------GR~sG~lAl~aaLA~~~ad-~ilIPE~~f~le~~~~l~~~i~~r~~~ 300 (447)
. .. |++|.++--. -|..||..+.....- ..+ .+.+.+.+++.+ .-.+.+++.++.
T Consensus 184 ~--~G-~r~I~~i~~~~~~~~~~~~R~~Gf~~al~~~g~-~~~~~~~~~~~~~~~~---~~~~~~~~ll~~ 247 (355)
T 3e3m_A 184 A--RG-FRKIVFLGEKDDDWTRGAARRAGFKRAMREAGL-NPDQEIRLGAPPLSIE---DGVAAAELILQE 247 (355)
T ss_dssp H--TT-CCSEEEEEESSCTTSHHHHHHHHHHHHHHHTTS-CSCCEEEESCSSCCHH---HHHHHHHHHHHH
T ss_pred H--CC-CCeEEEEccCcccChhHHHHHHHHHHHHHHCCc-CCCccEEEecCCCCHH---HHHHHHHHHHcC
Confidence 2 24 6788888532 244566654332211 122 233444455554 234445554544
No 26
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=82.63 E-value=34 Score=32.55 Aligned_cols=123 Identities=15% Similarity=0.038 Sum_probs=69.9
Q ss_pred CceEEEEccCCCCccHHHHHHHHHHHHHHhcCCeEEEEEcccccccccCCCCeEECChhhhhchhccCCccccccC-Ccc
Q 042534 80 NTRAAIVTCGGLCPGLNTVIRELVVGLWELYGVRQILGIQAGYRGFYSTTRNPLVLNPKMVRGWHKLGGTVLETSR-GGF 158 (447)
Q Consensus 80 ~~kiaIvtsGG~~PGlN~vIr~vv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~~~L~~~~v~~i~~~GGt~LGssR-~~~ 158 (447)
..+||++...-.-|=...++.++-..+. .+|+. +. +..+. ...
T Consensus 68 ~~~Ig~i~~~~~~~~~~~~~~gi~~~a~-~~g~~-~~----------------------------------~~~~~~~~~ 111 (344)
T 3kjx_A 68 VNLVAVIIPSLSNMVFPEVLTGINQVLE-DTELQ-PV----------------------------------VGVTDYLPE 111 (344)
T ss_dssp CSEEEEEESCSSSSSHHHHHHHHHHHHT-SSSSE-EE----------------------------------EEECTTCHH
T ss_pred CCEEEEEeCCCCcHHHHHHHHHHHHHHH-HCCCE-EE----------------------------------EEeCCCCHH
Confidence 3579999977777888888999888774 45542 21 00111 112
Q ss_pred cHHHHHHHHHHcCCCEEEEecCCCcHHHHHHHHHHHHHcCCcceEeeecccccccccCcCcccChhh--HHHHHHHHHHH
Q 042534 159 DLHQIVDAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGIPKTVDNDVGIIDRSFGFQT--AVEMAQQAISA 236 (447)
Q Consensus 159 ~~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVgIPkTIDNDi~~tD~s~GFdT--Av~~~~~ai~~ 236 (447)
...+.++.|...++|++++.+-+.+-.. .+.+.+. +++||.+= |.+-.....++++|- +...+++ .
T Consensus 112 ~~~~~i~~l~~~~vdGiIi~~~~~~~~~----~~~l~~~--~iPvV~i~---~~~~~~~~~~V~~D~~~~~~~a~~---~ 179 (344)
T 3kjx_A 112 KEEKVLYEMLSWRPSGVIIAGLEHSEAA----RAMLDAA--GIPVVEIM---DSDGKPVDAMVGISHRRAGREMAQ---A 179 (344)
T ss_dssp HHHHHHHHHHTTCCSEEEEECSCCCHHH----HHHHHHC--SSCEEEEE---ECSSCCSSEEEEECHHHHHHHHHH---H
T ss_pred HHHHHHHHHHhCCCCEEEEECCCCCHHH----HHHHHhC--CCCEEEEe---CCCCCCCCCEEEECcHHHHHHHHH---H
Confidence 2456788888999999999987766432 2333444 46676551 111111223555543 3333333 2
Q ss_pred HHHhhhhcCCcEEEEEe
Q 042534 237 AHVEAESAVNGIGLVKL 253 (447)
Q Consensus 237 i~~~A~S~~~~v~iVev 253 (447)
+.. .. |++|.++--
T Consensus 180 L~~--~G-~~~I~~i~~ 193 (344)
T 3kjx_A 180 ILK--AG-YRRIGFMGT 193 (344)
T ss_dssp HHH--HT-CCSCCEEES
T ss_pred HHH--CC-CCeEEEEec
Confidence 221 24 678888753
No 27
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=82.28 E-value=24 Score=33.53 Aligned_cols=124 Identities=9% Similarity=-0.004 Sum_probs=71.5
Q ss_pred CceEEEEccC--CCCccHHHHHHHHHHHHHHhcCCeEEEEEcccccccccCCCCeEECChhhhhchhccCCccccccCCc
Q 042534 80 NTRAAIVTCG--GLCPGLNTVIRELVVGLWELYGVRQILGIQAGYRGFYSTTRNPLVLNPKMVRGWHKLGGTVLETSRGG 157 (447)
Q Consensus 80 ~~kiaIvtsG--G~~PGlN~vIr~vv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~~~L~~~~v~~i~~~GGt~LGssR~~ 157 (447)
..+||++... -.-|=...++.++-+.+. .+|+. +.-+ .+...
T Consensus 61 ~~~Igvi~~~~~~~~~~~~~~~~gi~~~a~-~~g~~-~~~~----------------------------------~~~~~ 104 (338)
T 3dbi_A 61 TQTLGLVVTNTLYHGIYFSELLFHAARMAE-EKGRQ-LLLA----------------------------------DGKHS 104 (338)
T ss_dssp CSEEEEEECTTTTSTTHHHHHHHHHHHHHH-HTTCE-EEEE----------------------------------ECTTS
T ss_pred CCEEEEEecCCcccChhHHHHHHHHHHHHH-HCCCE-EEEE----------------------------------eCCCC
Confidence 4679999987 677888888999988874 45542 2110 11111
Q ss_pred -ccHHHHHHHHHHcCCCEEEEecCCCcHHHHHHHHHHHHHcCCcceEeeecccccccccCc-CcccChhhHHHHHHHHHH
Q 042534 158 -FDLHQIVDAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGIPKTVDNDVGII-DRSFGFQTAVEMAQQAIS 235 (447)
Q Consensus 158 -~~~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVgIPkTIDNDi~~t-D~s~GFdTAv~~~~~ai~ 235 (447)
....+.++.|.+.++|++++.+.+.+... +.+.+++. +++||.+ |.+++.. ..++++|-. ..+..+.+
T Consensus 105 ~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~---~~~~~~~~--~iPvV~~----~~~~~~~~~~~V~~D~~-~~~~~a~~ 174 (338)
T 3dbi_A 105 AEEERQAIQYLLDLRCDAIMIYPRFLSVDE---IDDIIDAH--SQPIMVL----NRRLRKNSSHSVWCDHK-QTSFNAVA 174 (338)
T ss_dssp HHHHHHHHHHHHHTTCSEEEECCSSSCHHH---HHHHHHHC--SSCEEEE----SSCCSSSGGGEECBCHH-HHHHHHHH
T ss_pred hHHHHHHHHHHHhCCCCEEEEeCCCCChHH---HHHHHHcC--CCCEEEE----cCCCCCCCCCEEEEChH-HHHHHHHH
Confidence 12345788899999999999998766433 33333333 4667744 4444332 134555431 22222333
Q ss_pred HHHHhhhhcCCcEEEEE
Q 042534 236 AAHVEAESAVNGIGLVK 252 (447)
Q Consensus 236 ~i~~~A~S~~~~v~iVe 252 (447)
.+.. .. |++|.++-
T Consensus 175 ~L~~--~G-~~~I~~i~ 188 (338)
T 3dbi_A 175 ELIN--AG-HQEIAFLT 188 (338)
T ss_dssp HHHH--TT-CCSEEEEC
T ss_pred HHHH--CC-CCEEEEEe
Confidence 3322 24 67888874
No 28
>1u0t_A Inorganic polyphosphate/ATP-NAD kinase; alpha-beta, beta sandwich, structural genomics, PSI, protein structure initiative; 2.30A {Mycobacterium tuberculosis} SCOP: e.52.1.1 PDB: 1u0r_A 1y3i_A* 1y3h_A
Probab=82.03 E-value=0.57 Score=45.84 Aligned_cols=34 Identities=29% Similarity=0.582 Sum_probs=24.4
Q ss_pred HcCCCEEEEecCCCcHHHHHHHHHHHHHcCCcceEeeec
Q 042534 169 TNAFNQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGIP 207 (447)
Q Consensus 169 ~~~Id~L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVgIP 207 (447)
..+.|.++++|||||+..|...... .+++++||+
T Consensus 73 ~~~~d~vi~~GGDGT~l~a~~~~~~-----~~~pvlgi~ 106 (307)
T 1u0t_A 73 ADGCELVLVLGGDGTFLRAAELARN-----ASIPVLGVN 106 (307)
T ss_dssp ---CCCEEEEECHHHHHHHHHHHHH-----HTCCEEEEE
T ss_pred ccCCCEEEEEeCCHHHHHHHHHhcc-----CCCCEEEEe
Confidence 3478999999999998877654332 257899998
No 29
>3pfn_A NAD kinase; structural genomics consortium, SNP, SGC, transferase; 2.70A {Homo sapiens}
Probab=80.07 E-value=0.89 Score=45.99 Aligned_cols=126 Identities=19% Similarity=0.188 Sum_probs=70.2
Q ss_pred cccccCCCCceEEEEccCCCCccHHHHHHHHHHHHHHhcCCeEEEEEcccccccccCCCCeEECChhhhhchhccCCc--
Q 042534 72 KQIFFEPKNTRAAIVTCGGLCPGLNTVIRELVVGLWELYGVRQILGIQAGYRGFYSTTRNPLVLNPKMVRGWHKLGGT-- 149 (447)
Q Consensus 72 ~~~~f~p~~~kiaIvtsGG~~PGlN~vIr~vv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~~~L~~~~v~~i~~~GGt-- 149 (447)
+++.+....++|+||+== ..|.+-..++.+++.|.. .++ +||- +.+ + .+... +...-..
T Consensus 30 ~~l~w~~~~k~I~iv~K~-~~~~~~~~~~~l~~~L~~-~~~-~V~v---------e~~--~----~~~~~-~~~~~~~~~ 90 (365)
T 3pfn_A 30 QRLTWNKSPKSVLVIKKM-RDASLLQPFKELCTHLME-ENM-IVYV---------EKK--V----LEDPA-IASDESFGA 90 (365)
T ss_dssp CBEEESSCCCEEEEEECT-TCGGGHHHHHHHHHHHHH-TSC-EEEE---------EHH--H----HHSHH-HHHCSTTHH
T ss_pred cccccCCCCCEEEEEecC-CCHHHHHHHHHHHHHHHH-CCC-EEEE---------ehH--H----hhhhc-ccccccccc
Confidence 355555556789999842 357888889999998864 453 5542 111 0 00000 0000000
Q ss_pred ---cccccCCcccHHHHHHHHHHcCCCEEEEecCCCcHHHHHHHHHHHHHcCCcceEeeecccccccccCcCcccChhhH
Q 042534 150 ---VLETSRGGFDLHQIVDAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGIPKTVDNDVGIIDRSFGFQTA 226 (447)
Q Consensus 150 ---~LGssR~~~~~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVgIPkTIDNDi~~tD~s~GFdTA 226 (447)
-+-+.+. +.+++ ..++|.++++|||||+-.|..+.. +..++|+||=. -++||=|-
T Consensus 91 ~~~~~~~~~~--~~~~~-----~~~~DlvI~lGGDGT~L~aa~~~~-----~~~~PvlGiN~----------G~LGFLt~ 148 (365)
T 3pfn_A 91 VKKKFCTFRE--DYDDI-----SNQIDFIICLGGDGTLLYASSLFQ-----GSVPPVMAFHL----------GSLGFLTP 148 (365)
T ss_dssp HHHHCEEECT--TTCCC-----TTTCSEEEEESSTTHHHHHHHHCS-----SSCCCEEEEES----------SSCTTTCC
T ss_pred cccccccccc--Chhhc-----ccCCCEEEEEcChHHHHHHHHHhc-----cCCCCEEEEcC----------CCCcccee
Confidence 0000000 01111 247899999999999887776542 35688999842 37888764
Q ss_pred H--HHHHHHHHHHH
Q 042534 227 V--EMAQQAISAAH 238 (447)
Q Consensus 227 v--~~~~~ai~~i~ 238 (447)
+ +.+.++++++.
T Consensus 149 ~~~~~~~~~l~~vl 162 (365)
T 3pfn_A 149 FSFENFQSQVTQVI 162 (365)
T ss_dssp EESTTHHHHHHHHH
T ss_pred ecHHHHHHHHHHHH
Confidence 3 34555666554
No 30
>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, struct genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli}
Probab=79.06 E-value=38 Score=30.88 Aligned_cols=123 Identities=11% Similarity=0.003 Sum_probs=67.9
Q ss_pred CceEEEEccC--CCCccHHHHHHHHHHHHHHhcCCeEEEEEcccccccccCCCCeEECChhhhhchhccCCccccccCCc
Q 042534 80 NTRAAIVTCG--GLCPGLNTVIRELVVGLWELYGVRQILGIQAGYRGFYSTTRNPLVLNPKMVRGWHKLGGTVLETSRGG 157 (447)
Q Consensus 80 ~~kiaIvtsG--G~~PGlN~vIr~vv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~~~L~~~~v~~i~~~GGt~LGssR~~ 157 (447)
..+||+++.. -..|-...++.++-..+. .+|+ ++.-+ .+...
T Consensus 19 ~~~Ig~i~~~~~~~~~~~~~~~~gi~~~~~-~~g~-~~~~~----------------------------------~~~~~ 62 (296)
T 3brq_A 19 TQTLGLVVTNTLYHGIYFSELLFHAARMAE-EKGR-QLLLA----------------------------------DGKHS 62 (296)
T ss_dssp CCEEEEEECGGGCC--CHHHHHHHHHHHHH-HTTC-EEEEE----------------------------------CCTTS
T ss_pred CceEEEEeCCcccCCchHHHHHHHHHHHHH-HCCC-EEEEE----------------------------------eCCCC
Confidence 4679999876 567788888999888774 4443 22100 01111
Q ss_pred -ccHHHHHHHHHHcCCCEEEEecCCCcHHHHHHHHHHHHH-cCCcceEeeecccccccccCcCcccChhh--HHHHHHHH
Q 042534 158 -FDLHQIVDAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQR-RKINVGVVGIPKTVDNDVGIIDRSFGFQT--AVEMAQQA 233 (447)
Q Consensus 158 -~~~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~~~~~~-~~~~i~VVgIPkTIDNDi~~tD~s~GFdT--Av~~~~~a 233 (447)
....+.++.|...++|++++.+.+.+-. .+ +.+.+ . +++||.+-...+++ . -.++++|- +...+++
T Consensus 63 ~~~~~~~~~~l~~~~vdgii~~~~~~~~~---~~-~~l~~~~--~iPvV~~~~~~~~~--~-~~~V~~d~~~~~~~a~~- 132 (296)
T 3brq_A 63 AEEERQAIQYLLDLRCDAIMIYPRFLSVD---EI-DDIIDAH--SQPIMVLNRRLRKN--S-SHSVWCDHKQTSFNAVA- 132 (296)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEECSSSCHH---HH-HHHHHTC--SSCEEEESCCCSSS--G-GGEECCCHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHhcCCCEEEEecCCCChH---HH-HHHHhcC--CCCEEEEccccCCC--C-CCEEEEchHHHHHHHHH-
Confidence 1234677788889999999998875532 22 33444 3 46677653333321 1 12455553 3333333
Q ss_pred HHHHHHhhhhcCCcEEEEEe
Q 042534 234 ISAAHVEAESAVNGIGLVKL 253 (447)
Q Consensus 234 i~~i~~~A~S~~~~v~iVev 253 (447)
.+.. .. |++|.++--
T Consensus 133 --~l~~--~G-~~~I~~i~~ 147 (296)
T 3brq_A 133 --ELIN--AG-HQEIAFLTG 147 (296)
T ss_dssp --HHHH--TT-CCSEEEECC
T ss_pred --HHHH--CC-CceEEEEcC
Confidence 3332 23 678888753
No 31
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=78.05 E-value=44 Score=31.03 Aligned_cols=133 Identities=9% Similarity=0.025 Sum_probs=77.0
Q ss_pred CceEEEEccCCCCccHHHHHHHHHHHHHHhcCCeEEEEEcccccccccCCCCeEECChhhhhchhccCCccccccCC-cc
Q 042534 80 NTRAAIVTCGGLCPGLNTVIRELVVGLWELYGVRQILGIQAGYRGFYSTTRNPLVLNPKMVRGWHKLGGTVLETSRG-GF 158 (447)
Q Consensus 80 ~~kiaIvtsGG~~PGlN~vIr~vv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~~~L~~~~v~~i~~~GGt~LGssR~-~~ 158 (447)
..+||+++..-.-|=...++.++-+.+. .+|+.-++ .++.. ..
T Consensus 15 s~~Igvi~~~~~~~~~~~~~~gi~~~a~-~~g~~~~~-----------------------------------~~~~~~~~ 58 (303)
T 3kke_A 15 SGTIGLIVPDVNNAVFADMFSGVQMAAS-GHSTDVLL-----------------------------------GQIDAPPR 58 (303)
T ss_dssp --CEEEEESCTTSTTHHHHHHHHHHHHH-HTTCCEEE-----------------------------------EECCSTTH
T ss_pred CCEEEEEeCCCcChHHHHHHHHHHHHHH-HCCCEEEE-----------------------------------EeCCCChH
Confidence 3569999988788888999999988874 45542111 01111 12
Q ss_pred cHHHHHHHHHHcCCCEEEEecCCCcHHHHHHHHHHHHHcCCcceEeeecccccccccCcCcccChhh--HHHHHHHHHHH
Q 042534 159 DLHQIVDAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGIPKTVDNDVGIIDRSFGFQT--AVEMAQQAISA 236 (447)
Q Consensus 159 ~~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVgIPkTIDNDi~~tD~s~GFdT--Av~~~~~ai~~ 236 (447)
...++++.|...++|++++.+.+.+... ..+.+.+ +++||.+=..+++ .-.++++|- +...+++ .
T Consensus 59 ~~~~~~~~l~~~~vdgiI~~~~~~~~~~---~~~~l~~---~iPvV~i~~~~~~----~~~~V~~D~~~~g~~a~~---~ 125 (303)
T 3kke_A 59 GTQQLSRLVSEGRVDGVLLQRREDFDDD---MLAAVLE---GVPAVTINSRVPG----RVGSVILDDQKGGGIATE---H 125 (303)
T ss_dssp HHHHHHHHHHSCSSSEEEECCCTTCCHH---HHHHHHT---TSCEEEESCCCTT----CCCEEEECHHHHHHHHHH---H
T ss_pred HHHHHHHHHHhCCCcEEEEecCCCCcHH---HHHHHhC---CCCEEEECCcCCC----CCCEEEECcHHHHHHHHH---H
Confidence 3467888899999999999998877431 2233333 5677765433332 123455442 3333333 3
Q ss_pred HHHhhhhcCCcEEEEEec-------CCccchHHHH
Q 042534 237 AHVEAESAVNGIGLVKLM-------GRSTGHIALH 264 (447)
Q Consensus 237 i~~~A~S~~~~v~iVevM-------GR~sG~lAl~ 264 (447)
+.. .. |++|.++--. -|..||..+.
T Consensus 126 L~~--~G-~~~I~~i~~~~~~~~~~~R~~Gf~~al 157 (303)
T 3kke_A 126 LIT--LG-HSRIAFISGTAIHDTAQRRKEGYLETL 157 (303)
T ss_dssp HHH--TT-CCSEEEEESCSSCHHHHHHHHHHHHHH
T ss_pred HHH--CC-CCeEEEEeCCCcCccHHHHHHHHHHHH
Confidence 332 24 6788888432 2455666543
No 32
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=77.90 E-value=48 Score=31.39 Aligned_cols=168 Identities=15% Similarity=0.086 Sum_probs=88.9
Q ss_pred CceEEEEccCCCCccHHHHHHHHHHHHHHhcCCeEEEEEcccccccccCCCCeEECChhhhhchhccCCccccccCCc-c
Q 042534 80 NTRAAIVTCGGLCPGLNTVIRELVVGLWELYGVRQILGIQAGYRGFYSTTRNPLVLNPKMVRGWHKLGGTVLETSRGG-F 158 (447)
Q Consensus 80 ~~kiaIvtsGG~~PGlN~vIr~vv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~~~L~~~~v~~i~~~GGt~LGssR~~-~ 158 (447)
..+||++...-.-|-...++.++-..+. .+|+. +. +..+... .
T Consensus 62 ~~~Igvi~~~~~~~~~~~~~~gi~~~a~-~~g~~-~~----------------------------------~~~~~~~~~ 105 (339)
T 3h5o_A 62 SRTVLVLIPSLANTVFLETLTGIETVLD-AAGYQ-ML----------------------------------IGNSHYDAG 105 (339)
T ss_dssp -CEEEEEESCSTTCTTHHHHHHHHHHHH-HTTCE-EE----------------------------------EEECTTCHH
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHHHH-HCCCE-EE----------------------------------EEeCCCChH
Confidence 3579999987777888889999988874 45642 21 1111111 2
Q ss_pred cHHHHHHHHHHcCCCEEEEecCCCcHHHHHHHHHHHHHcCCcceEeeecccccccccCcCcccChhhHHHHHHHHHHHHH
Q 042534 159 DLHQIVDAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGIPKTVDNDVGIIDRSFGFQTAVEMAQQAISAAH 238 (447)
Q Consensus 159 ~~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVgIPkTIDNDi~~tD~s~GFdTAv~~~~~ai~~i~ 238 (447)
...+.++.|...++|++++.+-+.+.... +.+.+. +++||.+=...+.+ ..++++|-. +.+..+.+.+.
T Consensus 106 ~~~~~~~~l~~~~vdGiIi~~~~~~~~~~----~~l~~~--~iPvV~~~~~~~~~----~~~V~~D~~-~~~~~a~~~L~ 174 (339)
T 3h5o_A 106 QELQLLRAYLQHRPDGVLITGLSHAEPFE----RILSQH--ALPVVYMMDLADDG----RCCVGFSQE-DAGAAITRHLL 174 (339)
T ss_dssp HHHHHHHHHHTTCCSEEEEECSCCCTTHH----HHHHHT--TCCEEEEESCCSSS----CCEEECCHH-HHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCEEEEeCCCCCHHHH----HHHhcC--CCCEEEEeecCCCC----CeEEEECHH-HHHHHHHHHHH
Confidence 24577888889999999999977654322 333333 56677652221111 115665531 12223333333
Q ss_pred HhhhhcCCcEEEEEec------CCccchHHHHHhhccCCccEEecCCCCCCcchhhhHHHHHHHHHhh
Q 042534 239 VEAESAVNGIGLVKLM------GRSTGHIALHATLSSRDVDCCLIPEMEFYLEGKGGLVEFLDNRLKE 300 (447)
Q Consensus 239 ~~A~S~~~~v~iVevM------GR~sG~lAl~aaLA~~~ad~ilIPE~~f~le~~~~l~~~i~~r~~~ 300 (447)
. .. |++|.++--. -|..||..+.....-...+..++.+..++.+ .-.+.+++.++.
T Consensus 175 ~--~G-~~~I~~i~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~---~~~~~~~~ll~~ 236 (339)
T 3h5o_A 175 S--RG-KRRIGFLGAQLDERVMKRLDGYRAALDAADCRDAGLEWLDPQPSSMQ---MGADMLDRALAE 236 (339)
T ss_dssp H--TT-CCSEEEEEESCCHHHHHHHHHHHHHHHHTTCCCGGGEEEECSCCCHH---HHHHHHHHHHHH
T ss_pred H--CC-CCeEEEEeCCCCccHHHHHHHHHHHHHHCCCCCCChheEecCCCCHH---HHHHHHHHHHcC
Confidence 2 24 7789888432 2445665543322110123333434455554 233444544544
No 33
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=76.72 E-value=23 Score=32.68 Aligned_cols=125 Identities=10% Similarity=0.033 Sum_probs=72.1
Q ss_pred CCceEEEEccCCCCccHHHHHHHHHHHHHHhcCCeEEEEEcccccccccCCCCeEECChhhhhchhccCCccccccCCcc
Q 042534 79 KNTRAAIVTCGGLCPGLNTVIRELVVGLWELYGVRQILGIQAGYRGFYSTTRNPLVLNPKMVRGWHKLGGTVLETSRGGF 158 (447)
Q Consensus 79 ~~~kiaIvtsGG~~PGlN~vIr~vv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~~~L~~~~v~~i~~~GGt~LGssR~~~ 158 (447)
+..+||++...-.-|=...++.++-+.+. .+|+ ++.-+. +.....
T Consensus 7 ~~~~Igvv~~~~~~~~~~~~~~gi~~~a~-~~g~-~~~~~~---------------------------------~~~~~~ 51 (291)
T 3egc_A 7 RSNVVGLIVSDIENVFFAEVASGVESEAR-HKGY-SVLLAN---------------------------------TAEDIV 51 (291)
T ss_dssp CCCEEEEEESCTTSHHHHHHHHHHHHHHH-HTTC-EEEEEE---------------------------------CTTCHH
T ss_pred CCcEEEEEECCCcchHHHHHHHHHHHHHH-HCCC-EEEEEe---------------------------------CCCCHH
Confidence 34679999988778888889999988874 4564 222110 001112
Q ss_pred cHHHHHHHHHHcCCCEEEEecCCCcHHHHHHHHHHHHHcCCcceEeeecccccccccCc-CcccChhhHHHHHHHHHHHH
Q 042534 159 DLHQIVDAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGIPKTVDNDVGII-DRSFGFQTAVEMAQQAISAA 237 (447)
Q Consensus 159 ~~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVgIPkTIDNDi~~t-D~s~GFdTAv~~~~~ai~~i 237 (447)
...++++.|...++|++++.+-+...... +.+.+ .+++||.+ |++.+.. -.++++|-. +.+..+.+.+
T Consensus 52 ~~~~~~~~l~~~~vdgiIi~~~~~~~~~~----~~~~~--~~iPvV~~----~~~~~~~~~~~V~~D~~-~~g~~a~~~L 120 (291)
T 3egc_A 52 REREAVGQFFERRVDGLILAPSEGEHDYL----RTELP--KTFPIVAV----NRELRIPGCGAVLSENV-RGARTAVEYL 120 (291)
T ss_dssp HHHHHHHHHHHTTCSEEEECCCSSCCHHH----HHSSC--TTSCEEEE----SSCCCCTTCEEEEECHH-HHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCEEEEeCCCCChHHH----HHhhc--cCCCEEEE----ecccCCCCCCEEEECcH-HHHHHHHHHH
Confidence 24568888999999999999987633322 22222 36778754 5544421 134554432 2222233333
Q ss_pred HHhhhhcCCcEEEEE
Q 042534 238 HVEAESAVNGIGLVK 252 (447)
Q Consensus 238 ~~~A~S~~~~v~iVe 252 (447)
.. .. +++|.++-
T Consensus 121 ~~--~G-~~~i~~i~ 132 (291)
T 3egc_A 121 IA--RG-HTRIGAIV 132 (291)
T ss_dssp HH--TT-CCSEEEEC
T ss_pred HH--cC-CCEEEEEe
Confidence 32 23 67888874
No 34
>2qv7_A Diacylglycerol kinase DGKB; alpha-beta domain 1, beta sandwich domain 2, protein-ADP COM transferase; HET: ADP; 2.30A {Staphylococcus aureus} SCOP: e.52.1.2 PDB: 2qvl_A
Probab=76.20 E-value=1.5 Score=43.17 Aligned_cols=51 Identities=22% Similarity=0.298 Sum_probs=37.1
Q ss_pred HHHHHHHHcCCCEEEEecCCCcHHHHHHHHHHHHHcCCcceEeeeccccccccc
Q 042534 162 QIVDAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGIPKTVDNDVG 215 (447)
Q Consensus 162 ~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVgIPkTIDNDi~ 215 (447)
++++.+.+.+.|.++++|||||+..+..-. .+.+.++++..||.==-||+.
T Consensus 71 ~~~~~~~~~~~d~vvv~GGDGTv~~v~~~l---~~~~~~~pl~iIP~GT~N~lA 121 (337)
T 2qv7_A 71 LEAERAMHENYDVLIAAGGDGTLNEVVNGI---AEKPNRPKLGVIPMGTVNDFG 121 (337)
T ss_dssp HHHHHHTTTTCSEEEEEECHHHHHHHHHHH---TTCSSCCEEEEEECSSCCHHH
T ss_pred HHHHHHhhcCCCEEEEEcCchHHHHHHHHH---HhCCCCCcEEEecCCcHhHHH
Confidence 444444456889999999999987764332 223567899999987778886
No 35
>1yt5_A Inorganic polyphosphate/ATP-NAD kinase; domain 1: alpha/beta domain2: beta sandwich, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima}
Probab=75.99 E-value=0.62 Score=44.44 Aligned_cols=32 Identities=25% Similarity=0.423 Sum_probs=24.8
Q ss_pred cCCCEEEEecCCCcHHHHHHHHHHHHHcCCcceEeeec
Q 042534 170 NAFNQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGIP 207 (447)
Q Consensus 170 ~~Id~L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVgIP 207 (447)
.+.|.++++|||||+-.|..... + +++++||+
T Consensus 40 ~~~D~vv~~GGDGTll~~a~~~~-----~-~~PilGIn 71 (258)
T 1yt5_A 40 VTADLIVVVGGDGTVLKAAKKAA-----D-GTPMVGFK 71 (258)
T ss_dssp BCCSEEEEEECHHHHHHHHTTBC-----T-TCEEEEEE
T ss_pred CCCCEEEEEeCcHHHHHHHHHhC-----C-CCCEEEEE
Confidence 37899999999999877654321 2 68899997
No 36
>3afo_A NADH kinase POS5; alpha/beta+BETA sandwich, ATP-binding, mitochondrion NADP, nucleotide-binding, transferase, transit peptide; HET: NAI; 2.00A {Saccharomyces cerevisiae}
Probab=75.25 E-value=0.71 Score=47.05 Aligned_cols=54 Identities=22% Similarity=0.434 Sum_probs=36.2
Q ss_pred cCCCEEEEecCCCcHHHHHHHHHHHHHcCCcc-eEeeecccccccccCcCcccChhhHHH--HHHHHHHHHH
Q 042534 170 NAFNQVYIIGGDGTMRGAVEIFDEIQRRKINV-GVVGIPKTVDNDVGIIDRSFGFQTAVE--MAQQAISAAH 238 (447)
Q Consensus 170 ~~Id~L~vIGGdgS~~~A~~L~~~~~~~~~~i-~VVgIPkTIDNDi~~tD~s~GFdTAv~--~~~~ai~~i~ 238 (447)
.+.|.+|++|||||+-.|..... +..+ +|+||+. -++||-|.++ ...++++.+.
T Consensus 113 ~~~DlVIvlGGDGTlL~aa~~~~-----~~~vpPiLGIN~----------G~lGFLt~~~~~~~~~al~~il 169 (388)
T 3afo_A 113 NRTDLLVTLGGDGTILHGVSMFG-----NTQVPPVLAFAL----------GTLGFLSPFDFKEHKKVFQEVI 169 (388)
T ss_dssp HHCSEEEEEESHHHHHHHHHTTT-----TSCCCCEEEEEC----------SSCCSSCCEEGGGHHHHHHHHH
T ss_pred cCCCEEEEEeCcHHHHHHHHHhc-----ccCCCeEEEEEC----------CCcccCCcCChHHHHHHHHHHh
Confidence 35899999999999888765532 2356 7999962 2667776533 3444555544
No 37
>2bon_A Lipid kinase; DAG kinase, transferase; 1.90A {Escherichia coli} SCOP: e.52.1.2 PDB: 2jgr_A 2p1r_A
Probab=75.16 E-value=2.6 Score=41.40 Aligned_cols=51 Identities=20% Similarity=0.208 Sum_probs=35.4
Q ss_pred HHHHHHHHcCCCEEEEecCCCcHHHHHHHHHHHHHc--CCcceEeeeccccccccc
Q 042534 162 QIVDAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQRR--KINVGVVGIPKTVDNDVG 215 (447)
Q Consensus 162 ~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~~~~~~~--~~~i~VVgIPkTIDNDi~ 215 (447)
++++.+...+.|.++++|||||+..+..-. .++ +.++++..||.==-||+.
T Consensus 73 ~~~~~~~~~~~d~vvv~GGDGTl~~v~~~l---~~~~~~~~~plgiiP~Gt~N~fa 125 (332)
T 2bon_A 73 RYVEEARKFGVATVIAGGGDGTINEVSTAL---IQCEGDDIPALGILPLGTANDFA 125 (332)
T ss_dssp HHHHHHHHHTCSEEEEEESHHHHHHHHHHH---HHCCSSCCCEEEEEECSSSCHHH
T ss_pred HHHHHHHhcCCCEEEEEccchHHHHHHHHH---hhcccCCCCeEEEecCcCHHHHH
Confidence 334444456799999999999988754322 222 457888889986667775
No 38
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=75.01 E-value=52 Score=30.36 Aligned_cols=135 Identities=13% Similarity=0.076 Sum_probs=74.2
Q ss_pred CceEEEEcc----CCCCccHHHHHHHHHHHHHHhcCCeEEEEEcccccccccCCCCeEECChhhhhchhccCCccccccC
Q 042534 80 NTRAAIVTC----GGLCPGLNTVIRELVVGLWELYGVRQILGIQAGYRGFYSTTRNPLVLNPKMVRGWHKLGGTVLETSR 155 (447)
Q Consensus 80 ~~kiaIvts----GG~~PGlN~vIr~vv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~~~L~~~~v~~i~~~GGt~LGssR 155 (447)
..+||+++. .-.-|=...+++++-+.+. .+|+. +.-+. +.
T Consensus 6 s~~Igvi~~~~~~~~~~~~~~~~~~gi~~~a~-~~g~~-~~~~~----------------------------------~~ 49 (294)
T 3qk7_A 6 TDAIALAYPSRPRVLNNSTFLEMISWIGIELG-KRGLD-LLLIP----------------------------------DE 49 (294)
T ss_dssp CCEEEEEEESCSGGGSCHHHHHHHHHHHHHHH-HTTCE-EEEEE----------------------------------EC
T ss_pred cceEEEEecCCCccccChhHHHHHHHHHHHHH-HCCCE-EEEEe----------------------------------CC
Confidence 456999986 4455677788888888774 45542 22110 00
Q ss_pred CcccHHHHHHHHHHcCCCEEEEecCCCcHHHHHHHHHHHHHcCCcceEeeecccccccccCcC-cccChhhHHHHHHHHH
Q 042534 156 GGFDLHQIVDAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGIPKTVDNDVGIID-RSFGFQTAVEMAQQAI 234 (447)
Q Consensus 156 ~~~~~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVgIPkTIDNDi~~tD-~s~GFdTAv~~~~~ai 234 (447)
......++.+.+.+.++|++++.+.+.+.... +.+.+. +++||.+ |++..... .++++|-. +.+..+.
T Consensus 50 ~~~~~~~~~~~l~~~~vdGiIi~~~~~~~~~~----~~l~~~--~iPvV~~----~~~~~~~~~~~V~~D~~-~~~~~a~ 118 (294)
T 3qk7_A 50 PGEKYQSLIHLVETRRVDALIVAHTQPEDFRL----QYLQKQ--NFPFLAL----GRSHLPKPYAWFDFDNH-AGASLAV 118 (294)
T ss_dssp TTCCCHHHHHHHHHTCCSEEEECSCCSSCHHH----HHHHHT--TCCEEEE----SCCCCSSCCEEEEECHH-HHHHHHH
T ss_pred ChhhHHHHHHHHHcCCCCEEEEeCCCCChHHH----HHHHhC--CCCEEEE----CCCCCCCCCCEEEcChH-HHHHHHH
Confidence 01123567888999999999999987655322 333344 4667744 44432211 24454431 2222233
Q ss_pred HHHHHhhhhcCCcEEEEEecC-------CccchHHHH
Q 042534 235 SAAHVEAESAVNGIGLVKLMG-------RSTGHIALH 264 (447)
Q Consensus 235 ~~i~~~A~S~~~~v~iVevMG-------R~sG~lAl~ 264 (447)
+.+.. .. |++|.++--.- |..||..+.
T Consensus 119 ~~L~~--~G-~~~I~~i~~~~~~~~~~~R~~Gf~~al 152 (294)
T 3qk7_A 119 KRLLE--LG-HQRIAFVSTDARISYVDQRLQGYVQTM 152 (294)
T ss_dssp HHHHH--TT-CCCEEEEEESSCCHHHHHHHHHHHHHH
T ss_pred HHHHH--CC-CceEEEEeCCcccchHHHHHHHHHHHH
Confidence 33322 24 67888885432 445665543
No 39
>1dbq_A Purine repressor; transcription regulation, DNA-binding regulatory protein; 2.20A {Escherichia coli} SCOP: c.93.1.1 PDB: 1jhz_A
Probab=74.70 E-value=51 Score=30.05 Aligned_cols=123 Identities=7% Similarity=0.027 Sum_probs=69.6
Q ss_pred CceEEEEccCCCCccHHHHHHHHHHHHHHhcCCeEEEEEcccccccccCCCCeEECChhhhhchhccCCccccccCCccc
Q 042534 80 NTRAAIVTCGGLCPGLNTVIRELVVGLWELYGVRQILGIQAGYRGFYSTTRNPLVLNPKMVRGWHKLGGTVLETSRGGFD 159 (447)
Q Consensus 80 ~~kiaIvtsGG~~PGlN~vIr~vv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~~~L~~~~v~~i~~~GGt~LGssR~~~~ 159 (447)
..+||++...-..|-...++.++-..+. .+|+ ++.-. . +......
T Consensus 7 ~~~Ig~i~~~~~~~~~~~~~~gi~~~~~-~~g~-~~~~~--------~-------------------------~~~~~~~ 51 (289)
T 1dbq_A 7 TKSIGLLATSSEAAYFAEIIEAVEKNCF-QKGY-TLILG--------N-------------------------AWNNLEK 51 (289)
T ss_dssp -CEEEEEESCTTSHHHHHHHHHHHHHHH-HHTC-EEEEE--------E-------------------------CTTCHHH
T ss_pred CCEEEEEeCCCCChHHHHHHHHHHHHHH-HcCC-eEEEE--------c-------------------------CCCChHH
Confidence 4579999977777888888888888774 4453 22100 0 0001112
Q ss_pred HHHHHHHHHHcCCCEEEEecCCCcHHHHHHHHHHHHHcCCcceEeeecccccccccCcC--cccChhh--HHHHHHHHHH
Q 042534 160 LHQIVDAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGIPKTVDNDVGIID--RSFGFQT--AVEMAQQAIS 235 (447)
Q Consensus 160 ~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVgIPkTIDNDi~~tD--~s~GFdT--Av~~~~~ai~ 235 (447)
..+.++.|...++|++++.+.+.+-.. .+.+.+ ..+++||.+ |++.+..+ .++++|- +...+++.
T Consensus 52 ~~~~~~~l~~~~vdgii~~~~~~~~~~----~~~l~~-~~~iPvV~~----~~~~~~~~~~~~V~~d~~~~~~~~~~~-- 120 (289)
T 1dbq_A 52 QRAYLSMMAQKRVDGLLVMCSEYPEPL----LAMLEE-YRHIPMVVM----DWGEAKADFTDAVIDNAFEGGYMAGRY-- 120 (289)
T ss_dssp HHHHHHHHHHTTCSEEEEECSCCCHHH----HHHHHH-TTTSCEEEE----ECSSCCSSSCEEEEECHHHHHHHHHHH--
T ss_pred HHHHHHHHHhCCCCEEEEEeccCCHHH----HHHHHh-ccCCCEEEE----ccCCCccCcCCEEEeCcHHHHHHHHHH--
Confidence 456788888999999999998765322 222322 135677765 44333222 3566553 33333333
Q ss_pred HHHHhhhhcCCcEEEEE
Q 042534 236 AAHVEAESAVNGIGLVK 252 (447)
Q Consensus 236 ~i~~~A~S~~~~v~iVe 252 (447)
+.. .. |++|.++-
T Consensus 121 -L~~--~G-~~~i~~i~ 133 (289)
T 1dbq_A 121 -LIE--RG-HREIGVIP 133 (289)
T ss_dssp -HHH--TT-CCSEEEEC
T ss_pred -HHH--CC-CCeEEEEe
Confidence 332 13 67888873
No 40
>3s4y_A Thiamin pyrophosphokinase 1; structural genomics, structural genomics consortium, transferase; HET: TPP; 1.80A {Homo sapiens} PDB: 1ig3_A* 2f17_A*
Probab=73.78 E-value=12 Score=35.49 Aligned_cols=103 Identities=15% Similarity=0.247 Sum_probs=62.0
Q ss_pred ccccccCCCCceEEEEccCCCCccHHHHHHHHHHHHHHhcCCeEEEEEccccccccc------CC--CC-----eEECCh
Q 042534 71 RKQIFFEPKNTRAAIVTCGGLCPGLNTVIRELVVGLWELYGVRQILGIQAGYRGFYS------TT--RN-----PLVLNP 137 (447)
Q Consensus 71 r~~~~f~p~~~kiaIvtsGG~~PGlN~vIr~vv~~~~~~~~~~~V~Gi~~G~~GL~~------~~--~~-----~~~L~~ 137 (447)
|+...+.....+-++|.++|+-|- . .+.+++... -++++-+|..=|++ .. .+ +-.+++
T Consensus 11 ~~~~~~~~~~~~~~lIv~ng~~~~---~----~~~~~~~~~--~~i~aDgGa~~l~~~~~~~~~~~~Pd~ivGD~DSi~~ 81 (247)
T 3s4y_A 11 RENLYFQGGNLKYCLVILNQPLDN---Y----FRHLWNKAL--LRACADGGANRLYDITEGERESFLPEFINGDFDSIRP 81 (247)
T ss_dssp ---------CCCEEEEECSSCCCT---T----HHHHHHHCS--CEEEETTHHHHHHHHTTTCGGGCCCSEEEECCSSSCH
T ss_pred cccccccCCCCCEEEEEECCcchH---H----HHHHHhhCC--EEEEEchHHHHHHHhccccccCCCccEEEcCCcCCCH
Confidence 555555555567788888999872 3 334444433 48999888776665 21 11 222666
Q ss_pred hhhhchhccCCccccccCCc--ccHHHHHHHHHHc------CCCEEEEecCCCc
Q 042534 138 KMVRGWHKLGGTVLETSRGG--FDLHQIVDAIQTN------AFNQVYIIGGDGT 183 (447)
Q Consensus 138 ~~v~~i~~~GGt~LGssR~~--~~~~~iv~~l~~~------~Id~L~vIGGdgS 183 (447)
+..+.+...|-.++-.. .+ -|.+++++.+.+. +.+-++++|+-|.
T Consensus 82 ~~~~~~~~~~~~i~~~p-eKD~TD~ekAl~~~~~~~~~~~~~~~~I~ilGa~GG 134 (247)
T 3s4y_A 82 EVREYYATKGCELISTP-DQDHTDFTKCLKMLQKKIEEKDLKVDVIVTLGGLAG 134 (247)
T ss_dssp HHHHHHHHTTCEEEECC-CTTSCHHHHHHHHHHHHHHHTTCCCSEEEEECCSSS
T ss_pred HHHHHHHhcCCEEEECC-CCCcCHHHHHHHHHHHhhhhccCCCCEEEEEecCCC
Confidence 66667776665565433 22 3788888877654 7899999999997
No 41
>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G*
Probab=73.12 E-value=57 Score=29.98 Aligned_cols=123 Identities=14% Similarity=0.097 Sum_probs=70.2
Q ss_pred CceEEEEccCCCCccHHHHHHHHHHHHHHhcCCeEEEEEcccccccccCCCCeEECChhhhhchhccCCccccccCCc-c
Q 042534 80 NTRAAIVTCGGLCPGLNTVIRELVVGLWELYGVRQILGIQAGYRGFYSTTRNPLVLNPKMVRGWHKLGGTVLETSRGG-F 158 (447)
Q Consensus 80 ~~kiaIvtsGG~~PGlN~vIr~vv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~~~L~~~~v~~i~~~GGt~LGssR~~-~ 158 (447)
..+||++...-.-|-...++.++-+.+. .+|+ ++.-+ .+... .
T Consensus 16 s~~Igvi~~~~~~~~~~~~~~gi~~~a~-~~g~-~~~~~----------------------------------~~~~~~~ 59 (289)
T 2fep_A 16 TTTVGVIIPDISSIFYSELARGIEDIAT-MYKY-NIILS----------------------------------NSDQNME 59 (289)
T ss_dssp CCEEEEEESCTTSHHHHHHHHHHHHHHH-HTTC-EEEEE----------------------------------ECTTCHH
T ss_pred CCeEEEEeCCCCCchHHHHHHHHHHHHH-HcCC-EEEEE----------------------------------eCCCCHH
Confidence 3579999977667778888888888774 4554 22100 01111 1
Q ss_pred cHHHHHHHHHHcCCCEEEEecCCCcHHHHHHHHHHHHHcCCcceEeeecccccccccCcCcccChhh--HHHHHHHHHHH
Q 042534 159 DLHQIVDAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGIPKTVDNDVGIIDRSFGFQT--AVEMAQQAISA 236 (447)
Q Consensus 159 ~~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVgIPkTIDNDi~~tD~s~GFdT--Av~~~~~ai~~ 236 (447)
...+.++.|...++|++++.+.+.+... + +.+.+. +++||.+-..++++ . -.++++|- +...+++.
T Consensus 60 ~~~~~~~~l~~~~vdgiIi~~~~~~~~~---~-~~l~~~--~iPvV~~~~~~~~~--~-~~~V~~D~~~~g~~a~~~--- 127 (289)
T 2fep_A 60 KELHLLNTMLGKQVDGIVFMGGNITDEH---V-AEFKRS--PVPIVLAASVEEQE--E-TPSVAIDYEQAIYDAVKL--- 127 (289)
T ss_dssp HHHHHHHHHHHTTCSEEEECCSCCCHHH---H-HHHHHS--SSCEEEESCCCTTC--C-SCEEECCHHHHHHHHHHH---
T ss_pred HHHHHHHHHHhCCCCEEEEecCCCCHHH---H-HHHHhc--CCCEEEEccccCCC--C-CCEEEECcHHHHHHHHHH---
Confidence 2456788888999999999987655322 2 333333 56677663333321 1 13455543 33334333
Q ss_pred HHHhhhhcCCcEEEEEe
Q 042534 237 AHVEAESAVNGIGLVKL 253 (447)
Q Consensus 237 i~~~A~S~~~~v~iVev 253 (447)
+.. .. +++|.++--
T Consensus 128 L~~--~G-~~~I~~i~~ 141 (289)
T 2fep_A 128 LVD--KG-HTDIAFVSG 141 (289)
T ss_dssp HHH--TT-CSSEEEEES
T ss_pred HHH--CC-CCeEEEEeC
Confidence 322 24 678888854
No 42
>1jq5_A Glycerol dehydrogenase; oxidoreductase, NAD, glycerol metabolism; HET: NAD; 1.70A {Geobacillus stearothermophilus} SCOP: e.22.1.2 PDB: 1jpu_A* 1jqa_A*
Probab=73.11 E-value=4.3 Score=40.37 Aligned_cols=46 Identities=22% Similarity=0.325 Sum_probs=39.1
Q ss_pred cHHHHHHHHHHcCCCEEEEecCCCcHHHHHHHHHHHHHcCCcceEeeeccc
Q 042534 159 DLHQIVDAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGIPKT 209 (447)
Q Consensus 159 ~~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVgIPkT 209 (447)
.++++++.+++.+.|.++-|||--.+..|..++-. + ++++|.||-|
T Consensus 74 ~v~~~~~~~~~~~~d~IIavGGGsv~D~aK~iA~~---~--~~p~i~IPTT 119 (370)
T 1jq5_A 74 EVERIANIARKAEAAIVIGVGGGKTLDTAKAVADE---L--DAYIVIVPTA 119 (370)
T ss_dssp HHHHHHHHHHHTTCSEEEEEESHHHHHHHHHHHHH---H--TCEEEEEESS
T ss_pred HHHHHHHHHHhcCCCEEEEeCChHHHHHHHHHHHh---c--CCCEEEeccc
Confidence 46788899999999999999998888888888732 2 5889999999
No 43
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}
Probab=73.10 E-value=53 Score=29.54 Aligned_cols=170 Identities=16% Similarity=0.087 Sum_probs=87.6
Q ss_pred ceEEEEccCCCCccHHHHHHHHHHHHHHhcCCeEEEEEcccccccccCCCCeEECChhhhhchhccCCccccccCCcccH
Q 042534 81 TRAAIVTCGGLCPGLNTVIRELVVGLWELYGVRQILGIQAGYRGFYSTTRNPLVLNPKMVRGWHKLGGTVLETSRGGFDL 160 (447)
Q Consensus 81 ~kiaIvtsGG~~PGlN~vIr~vv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~~~L~~~~v~~i~~~GGt~LGssR~~~~~ 160 (447)
.|||++...-.-|-...+++++-+.+. .+|+ ++.- .+. .+.......
T Consensus 1 ~~Ig~i~~~~~~~~~~~~~~gi~~~~~-~~g~-~~~~-----------------~~~--------------~~~~~~~~~ 47 (276)
T 3ksm_A 1 PKLLLVLKGDSNAYWRQVYLGAQKAAD-EAGV-TLLH-----------------RST--------------KDDGDIAGQ 47 (276)
T ss_dssp CEEEEECSCSSSTHHHHHHHHHHHHHH-HHTC-EEEE-----------------CCC--------------SSTTCHHHH
T ss_pred CeEEEEeCCCCChHHHHHHHHHHHHHH-HcCC-EEEE-----------------ECC--------------CCCCCHHHH
Confidence 479999988888999999999998875 4454 2210 000 000111224
Q ss_pred HHHHHHHHHcC-CCEEEEecCCCcHHHHHHHHHHHHHcCCcceEeeecccccccccCcC--cccChhh--HHHHHHHHHH
Q 042534 161 HQIVDAIQTNA-FNQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGIPKTVDNDVGIID--RSFGFQT--AVEMAQQAIS 235 (447)
Q Consensus 161 ~~iv~~l~~~~-Id~L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVgIPkTIDNDi~~tD--~s~GFdT--Av~~~~~ai~ 235 (447)
.+.++.|.+.+ +|++++.+-+.+... ...+.+.+. +++||.+ |++.+..+ .++++|- +...+++
T Consensus 48 ~~~i~~l~~~~~vdgii~~~~~~~~~~--~~~~~~~~~--~ipvV~~----~~~~~~~~~~~~V~~d~~~~g~~~~~--- 116 (276)
T 3ksm_A 48 IQILSYHLSQAPPDALILAPNSAEDLT--PSVAQYRAR--NIPVLVV----DSDLAGDAHQGLVATDNYAAGQLAAR--- 116 (276)
T ss_dssp HHHHHHHHHHSCCSEEEECCSSTTTTH--HHHHHHHHT--TCCEEEE----SSCCSSSCSSEEEECCHHHHHHHHHH---
T ss_pred HHHHHHHHHhCCCCEEEEeCCCHHHHH--HHHHHHHHC--CCcEEEE----ecCCCCCCcceEEccCHHHHHHHHHH---
Confidence 56778888888 999999986533211 122333333 5677765 34443322 2345443 3333333
Q ss_pred HHHHhhh--hcCCcEEEEEec-------CCccchHHHHHhhccC-CccEEecCCCCCCcchhhhHHHHHHHHHhhC
Q 042534 236 AAHVEAE--SAVNGIGLVKLM-------GRSTGHIALHATLSSR-DVDCCLIPEMEFYLEGKGGLVEFLDNRLKEN 301 (447)
Q Consensus 236 ~i~~~A~--S~~~~v~iVevM-------GR~sG~lAl~aaLA~~-~ad~ilIPE~~f~le~~~~l~~~i~~r~~~k 301 (447)
.+..... . |+++.++--. -|..||... ++.. ...+..+....++.+ .-.+.+++.++.+
T Consensus 117 ~l~~~~~~~G-~~~i~~i~~~~~~~~~~~R~~gf~~~---l~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~ 185 (276)
T 3ksm_A 117 ALLATLDLSK-ERNIALLRLRAGNASTDQREQGFLDV---LRKHDKIRIIAAPYAGDDRG---AARSEMLRLLKET 185 (276)
T ss_dssp HHHHHSCTTS-CEEEEECBCCTTCHHHHHHHHHHHHH---HTTCTTEEEEECCBCCSSHH---HHHHHHHHHHHHC
T ss_pred HHHHhcCcCC-CceEEEEEcCCCchhHHHHHHHHHHH---HHhCCCcEEEEEecCCCcHH---HHHHHHHHHHHhC
Confidence 3322211 3 5677776421 133444443 3332 244444444444444 3445555555543
No 44
>3d8u_A PURR transcriptional regulator; APC91343.1, vibrio parahaem RIMD 2210633, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.88A {Vibrio parahaemolyticus}
Probab=72.58 E-value=55 Score=29.53 Aligned_cols=125 Identities=13% Similarity=0.138 Sum_probs=69.8
Q ss_pred CceEEEEccCCCCccHHHHHHHHHHHHHHhcCCeEEEEEcccccccccCCCCeEECChhhhhchhccCCccccccCCc-c
Q 042534 80 NTRAAIVTCGGLCPGLNTVIRELVVGLWELYGVRQILGIQAGYRGFYSTTRNPLVLNPKMVRGWHKLGGTVLETSRGG-F 158 (447)
Q Consensus 80 ~~kiaIvtsGG~~PGlN~vIr~vv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~~~L~~~~v~~i~~~GGt~LGssR~~-~ 158 (447)
..+||+++..-.-|-...++.++-+.+. .+|+ ++. +..+... .
T Consensus 3 s~~Ig~i~~~~~~~~~~~~~~gi~~~~~-~~g~-~~~----------------------------------~~~~~~~~~ 46 (275)
T 3d8u_A 3 AYSIALIIPSLFEKACAHFLPSFQQALN-KAGY-QLL----------------------------------LGYSDYSIE 46 (275)
T ss_dssp -CEEEEEESCSSCHHHHHHHHHHHHHHH-HTSC-EEC----------------------------------CEECTTCHH
T ss_pred ceEEEEEeCCCccccHHHHHHHHHHHHH-HCCC-EEE----------------------------------EEcCCCCHH
Confidence 3579999877677888888888888774 4443 111 0011111 1
Q ss_pred cHHHHHHHHHHcCCCEEEEecCCCcHHHHHHHHHHHHHcCCcceEeeecccccccccCcCcccChhhHHHHHHHHHHHHH
Q 042534 159 DLHQIVDAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGIPKTVDNDVGIIDRSFGFQTAVEMAQQAISAAH 238 (447)
Q Consensus 159 ~~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVgIPkTIDNDi~~tD~s~GFdTAv~~~~~ai~~i~ 238 (447)
...+.++.+...++|++++.+.+.+-. +.+.+.+. +++||.+=..++++ . -.++++|-. +.+..+.+.+.
T Consensus 47 ~~~~~~~~l~~~~vdgii~~~~~~~~~----~~~~l~~~--~iPvV~~~~~~~~~--~-~~~V~~d~~-~~~~~a~~~L~ 116 (275)
T 3d8u_A 47 QEEKLLSTFLESRPAGVVLFGSEHSQR----THQLLEAS--NTPVLEIAELSSKA--S-YLNIGVDHF-EVGKACTRHLI 116 (275)
T ss_dssp HHHHHHHHHHTSCCCCEEEESSCCCHH----HHHHHHHH--TCCEEEESSSCSSS--S-SEEECBCHH-HHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCHH----HHHHHHhC--CCCEEEEeeccCCC--C-CCEEEEChH-HHHHHHHHHHH
Confidence 235678888899999999999876532 22333333 46677653333221 1 135666532 22223333333
Q ss_pred HhhhhcCCcEEEEEe
Q 042534 239 VEAESAVNGIGLVKL 253 (447)
Q Consensus 239 ~~A~S~~~~v~iVev 253 (447)
. .. |++|.++--
T Consensus 117 ~--~G-~~~i~~i~~ 128 (275)
T 3d8u_A 117 E--QG-FKNVGFIGA 128 (275)
T ss_dssp T--TT-CCCEEEEEC
T ss_pred H--CC-CCeEEEEcC
Confidence 2 24 678888753
No 45
>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*
Probab=72.36 E-value=63 Score=30.11 Aligned_cols=102 Identities=12% Similarity=0.064 Sum_probs=62.7
Q ss_pred CCceEEEEccCCCCccHHHHHHHHHHHHHHhcCCeEEEEEcccccccccCCCCeEECChhhhhchhccCCccccccCCc-
Q 042534 79 KNTRAAIVTCGGLCPGLNTVIRELVVGLWELYGVRQILGIQAGYRGFYSTTRNPLVLNPKMVRGWHKLGGTVLETSRGG- 157 (447)
Q Consensus 79 ~~~kiaIvtsGG~~PGlN~vIr~vv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~~~L~~~~v~~i~~~GGt~LGssR~~- 157 (447)
+..+||+++..-.-|=...++.++-..+. .+|+. +.-+ .+...
T Consensus 2 ~~~~Igvi~~~~~~~~~~~~~~gi~~~a~-~~g~~-~~~~----------------------------------~~~~~~ 45 (330)
T 3uug_A 2 DKGSVGIAMPTKSSARWIDDGNNIVKQLQ-EAGYK-TDLQ----------------------------------YADDDI 45 (330)
T ss_dssp CCCEEEEEECCSSSTHHHHHHHHHHHHHH-HTTCE-EEEE----------------------------------ECTTCH
T ss_pred CCcEEEEEeCCCcchHHHHHHHHHHHHHH-HcCCE-EEEe----------------------------------eCCCCH
Confidence 35789999988888889999999988874 45542 2210 01111
Q ss_pred ccHHHHHHHHHHcCCCEEEEecCCCcHHHHHHHHHHHHHcCCcceEeeecccccccccC---cCcccChh
Q 042534 158 FDLHQIVDAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGIPKTVDNDVGI---IDRSFGFQ 224 (447)
Q Consensus 158 ~~~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVgIPkTIDNDi~~---tD~s~GFd 224 (447)
....+.++.+...++|++++.+-+.+.. ....+.+.+. +++||.+ |++++. .+.++++|
T Consensus 46 ~~~~~~i~~~~~~~vdgiIi~~~~~~~~--~~~~~~~~~~--giPvV~~----~~~~~~~~~~~~~V~~D 107 (330)
T 3uug_A 46 PNQLSQIENMVTKGVKVLVIASIDGTTL--SDVLKQAGEQ--GIKVIAY----DRLIRNSGDVSYYATFD 107 (330)
T ss_dssp HHHHHHHHHHHHHTCSEEEECCSSGGGG--HHHHHHHHHT--TCEEEEE----SSCCCSCTTCCEEEEEC
T ss_pred HHHHHHHHHHHHcCCCEEEEEcCCchhH--HHHHHHHHHC--CCCEEEE----CCCCCCCCceeEEEEeC
Confidence 2245677888889999999998875321 1122333333 5778765 444433 23466655
No 46
>2dri_A D-ribose-binding protein; sugar transport; HET: RIP; 1.60A {Escherichia coli} SCOP: c.93.1.1 PDB: 1urp_A* 1ba2_A 1dbp_A* 1drj_A* 1drk_A* 2gx6_A*
Probab=71.71 E-value=59 Score=29.51 Aligned_cols=139 Identities=12% Similarity=-0.000 Sum_probs=74.7
Q ss_pred ceEEEEccCCCCccHHHHHHHHHHHHHHhcCCeEEEEEcccccccccCCCCeEECChhhhhchhccCCccccccCCc-cc
Q 042534 81 TRAAIVTCGGLCPGLNTVIRELVVGLWELYGVRQILGIQAGYRGFYSTTRNPLVLNPKMVRGWHKLGGTVLETSRGG-FD 159 (447)
Q Consensus 81 ~kiaIvtsGG~~PGlN~vIr~vv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~~~L~~~~v~~i~~~GGt~LGssR~~-~~ 159 (447)
++||++...-.-|-...+++++-+.+. .+|+ ++.-. ++... ..
T Consensus 2 ~~Igvi~~~~~~~f~~~~~~gi~~~~~-~~g~-~~~~~----------------------------------~~~~~~~~ 45 (271)
T 2dri_A 2 DTIALVVSTLNNPFFVSLKDGAQKEAD-KLGY-NLVVL----------------------------------DSQNNPAK 45 (271)
T ss_dssp CEEEEEESCSSSHHHHHHHHHHHHHHH-HHTC-EEEEE----------------------------------ECTTCHHH
T ss_pred cEEEEEecCCCCHHHHHHHHHHHHHHH-HcCc-EEEEe----------------------------------CCCCCHHH
Confidence 569999877777888888888888874 4454 22110 11111 12
Q ss_pred HHHHHHHHHHcCCCEEEEecCCCcHHHHHHHHHHHHHcCCcceEeeecccccccccCcC--cccChhhHHHHHHHHHHHH
Q 042534 160 LHQIVDAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGIPKTVDNDVGIID--RSFGFQTAVEMAQQAISAA 237 (447)
Q Consensus 160 ~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVgIPkTIDNDi~~tD--~s~GFdTAv~~~~~ai~~i 237 (447)
..+.++.+...++|++++.+.+.... ..+.+.+.+. +++||.+ |++.+..+ .+++.|-. ..+..+.+.+
T Consensus 46 ~~~~i~~l~~~~vdgiIi~~~~~~~~--~~~~~~~~~~--~iPvV~i----~~~~~~~~~~~~V~~D~~-~~g~~a~~~L 116 (271)
T 2dri_A 46 ELANVQDLTVRGTKILLINPTDSDAV--GNAVKMANQA--NIPVITL----DRQATKGEVVSHIASDNV-LGGKIAGDYI 116 (271)
T ss_dssp HHHHHHHHTTTTEEEEEECCSSTTTT--HHHHHHHHHT--TCCEEEE----SSCCSSSCCSEEEEECHH-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCEEEEeCCChHHH--HHHHHHHHHC--CCcEEEe----cCCCCCCceeEEEecChH-HHHHHHHHHH
Confidence 34567778888999999987654321 1122333344 4667754 55444322 25666531 2222333333
Q ss_pred HHhhhhcCCcEEEEEec-------CCccchHHHHH
Q 042534 238 HVEAESAVNGIGLVKLM-------GRSTGHIALHA 265 (447)
Q Consensus 238 ~~~A~S~~~~v~iVevM-------GR~sG~lAl~a 265 (447)
...... |++|.++--. -|..||..+..
T Consensus 117 ~~~g~g-~~~I~~i~g~~~~~~~~~R~~Gf~~al~ 150 (271)
T 2dri_A 117 AKKAGE-GAKVIELQGIAGTSAARERGEGFQQAVA 150 (271)
T ss_dssp HHHHCT-TCEEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred HHHcCC-CCeEEEEECCCCCccHhHHHHHHHHHHh
Confidence 322222 4678887521 24556665443
No 47
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=71.56 E-value=35 Score=31.61 Aligned_cols=92 Identities=9% Similarity=0.037 Sum_probs=56.5
Q ss_pred CCceEEEEccCCCCccHHHHHHHHHHHHHHhcCCeEEEEEcccccccccCCCCeEECChhhhhchhccCCccccccCCcc
Q 042534 79 KNTRAAIVTCGGLCPGLNTVIRELVVGLWELYGVRQILGIQAGYRGFYSTTRNPLVLNPKMVRGWHKLGGTVLETSRGGF 158 (447)
Q Consensus 79 ~~~kiaIvtsGG~~PGlN~vIr~vv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~~~L~~~~v~~i~~~GGt~LGssR~~~ 158 (447)
.+.+||+++..-.-|-...+++++-+.+. .+|+ ++.-. .. .+.....
T Consensus 2 ~~~~Igvi~~~~~~~~~~~~~~gi~~~a~-~~g~-~~~~~---------~~----------------------~~~~~~~ 48 (297)
T 3rot_A 2 VRDKYYLITHGSQDPYWTSLFQGAKKAAE-ELKV-DLQIL---------AP----------------------PGANDVP 48 (297)
T ss_dssp -CCEEEEECSCCCSHHHHHHHHHHHHHHH-HHTC-EEEEE---------CC----------------------SSSCCHH
T ss_pred ceEEEEEEecCCCCchHHHHHHHHHHHHH-HhCc-EEEEE---------CC----------------------CCcCCHH
Confidence 35789999988888999999999998875 4554 22110 00 0001112
Q ss_pred cHHHHHHHHHHcCCCEEEEecCCCcHHHHHHHHHHHHHcCCcceEeeec
Q 042534 159 DLHQIVDAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGIP 207 (447)
Q Consensus 159 ~~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVgIP 207 (447)
...+.++.+...++|++++.+-+.+... ...+.+.+. +|+||.+=
T Consensus 49 ~~~~~i~~l~~~~vdgiii~~~~~~~~~--~~~~~~~~~--giPvV~~~ 93 (297)
T 3rot_A 49 KQVQFIESALATYPSGIATTIPSDTAFS--KSLQRANKL--NIPVIAVD 93 (297)
T ss_dssp HHHHHHHHHHHTCCSEEEECCCCSSTTH--HHHHHHHHH--TCCEEEES
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCHHHHH--HHHHHHHHC--CCCEEEEc
Confidence 3457788888999999999887765211 112233333 56777553
No 48
>2vk2_A YTFQ, ABC transporter periplasmic-binding protein YTFQ; transport protein, galactofuranose; HET: GZL; 1.20A {Escherichia coli}
Probab=71.38 E-value=64 Score=29.84 Aligned_cols=87 Identities=8% Similarity=0.002 Sum_probs=53.2
Q ss_pred CceEEEEccCCCCccHHHHHHHHHHHHHHhcCCeEEEEEcccccccccCCCCeEECChhhhhchhccCCccccccCCc-c
Q 042534 80 NTRAAIVTCGGLCPGLNTVIRELVVGLWELYGVRQILGIQAGYRGFYSTTRNPLVLNPKMVRGWHKLGGTVLETSRGG-F 158 (447)
Q Consensus 80 ~~kiaIvtsGG~~PGlN~vIr~vv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~~~L~~~~v~~i~~~GGt~LGssR~~-~ 158 (447)
..+||++...-..|-...++.++-+.+. .+|+ ++.- ..+... .
T Consensus 2 ~~~Ig~i~~~~~~~~~~~~~~gi~~~a~-~~g~-~l~~----------------------------------~~~~~~~~ 45 (306)
T 2vk2_A 2 PLTVGFSQVGSESGWRAAETNVAKSEAE-KRGI-TLKI----------------------------------ADGQQKQE 45 (306)
T ss_dssp CCEEEEEECCCCSHHHHHHHHHHHHHHH-HHTC-EEEE----------------------------------EECTTCHH
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHH-HcCC-EEEE----------------------------------eCCCCCHH
Confidence 3689999987777878888888887774 4554 2210 001111 1
Q ss_pred cHHHHHHHHHHcCCCEEEEecCCCcH-HHHHHHHHHHHHcCCcceEeeec
Q 042534 159 DLHQIVDAIQTNAFNQVYIIGGDGTM-RGAVEIFDEIQRRKINVGVVGIP 207 (447)
Q Consensus 159 ~~~~iv~~l~~~~Id~L~vIGGdgS~-~~A~~L~~~~~~~~~~i~VVgIP 207 (447)
...+.++.|...++|++++.+.+.+. .. ..+.+.+. +++||.+-
T Consensus 46 ~~~~~i~~l~~~~vdgiIi~~~~~~~~~~---~~~~~~~~--~iPvV~~~ 90 (306)
T 2vk2_A 46 NQIKAVRSFVAQGVDAIFIAPVVATGWEP---VLKEAKDA--EIPVFLLD 90 (306)
T ss_dssp HHHHHHHHHHHHTCSEEEECCSSSSSCHH---HHHHHHHT--TCCEEEES
T ss_pred HHHHHHHHHHHcCCCEEEEeCCChhhHHH---HHHHHHHC--CCCEEEec
Confidence 23467788888999999999877542 22 12333333 46677653
No 49
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=71.35 E-value=58 Score=29.26 Aligned_cols=167 Identities=11% Similarity=0.118 Sum_probs=89.0
Q ss_pred CceEEEEccCCCCccHHHHHHHHHHHHHHhcCCeEEEEEcccccccccCCCCeEECChhhhhchhccCCccccccCCccc
Q 042534 80 NTRAAIVTCGGLCPGLNTVIRELVVGLWELYGVRQILGIQAGYRGFYSTTRNPLVLNPKMVRGWHKLGGTVLETSRGGFD 159 (447)
Q Consensus 80 ~~kiaIvtsGG~~PGlN~vIr~vv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~~~L~~~~v~~i~~~GGt~LGssR~~~~ 159 (447)
..+||++...-.-|=...++.++-+.+. .+|+. +.-+. +......
T Consensus 2 s~~Igvi~~~~~~~~~~~~~~gi~~~a~-~~g~~-~~~~~---------------------------------~~~~~~~ 46 (272)
T 3o74_A 2 TRTLGFILPDLENPSYARIAKQLEQGAR-ARGYQ-LLIAS---------------------------------SDDQPDS 46 (272)
T ss_dssp CCEEEEEESCTTCHHHHHHHHHHHHHHH-HTTCE-EEEEE---------------------------------CTTCHHH
T ss_pred ceEEEEEeCCCcChhHHHHHHHHHHHHH-HCCCE-EEEEe---------------------------------CCCCHHH
Confidence 3579999988888888999999988874 45642 22110 0111123
Q ss_pred HHHHHHHHHHcCCCEEEEecCCCcHHHHHHHHHHHHHcCCcceEeeecccccccccCcC-cccChhhHHHHHHHHHHHHH
Q 042534 160 LHQIVDAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGIPKTVDNDVGIID-RSFGFQTAVEMAQQAISAAH 238 (447)
Q Consensus 160 ~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVgIPkTIDNDi~~tD-~s~GFdTAv~~~~~ai~~i~ 238 (447)
..+.++.+...++|++++.+.+..... ..+.+.+. +++||. +|++++..+ .++++|-. +.+..+.+.+.
T Consensus 47 ~~~~~~~l~~~~vdgiIi~~~~~~~~~---~~~~~~~~--~iPvV~----~~~~~~~~~~~~V~~d~~-~~~~~a~~~L~ 116 (272)
T 3o74_A 47 ERQLQQLFRARRCDALFVASCLPPEDD---SYRELQDK--GLPVIA----IDRRLDPAHFCSVISDDR-DASRQLAASLL 116 (272)
T ss_dssp HHHHHHHHHHTTCSEEEECCCCCSSCC---HHHHHHHT--TCCEEE----ESSCCCTTTCEEEEECHH-HHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCEEEEecCccccHH---HHHHHHHc--CCCEEE----EccCCCccccCEEEEchH-HHHHHHHHHHH
Confidence 457788889999999999988743211 22333344 566774 455554321 24454421 12222333333
Q ss_pred HhhhhcCCcEEEEEecC-------CccchHHHHHhhccCCccEEecCCCCCCcchhhhHHHHHHHHHhh
Q 042534 239 VEAESAVNGIGLVKLMG-------RSTGHIALHATLSSRDVDCCLIPEMEFYLEGKGGLVEFLDNRLKE 300 (447)
Q Consensus 239 ~~A~S~~~~v~iVevMG-------R~sG~lAl~aaLA~~~ad~ilIPE~~f~le~~~~l~~~i~~r~~~ 300 (447)
. .. |+++.++--.- |..||.. ++.....+...+....++.+ .-.+.+++.++.
T Consensus 117 ~--~G-~~~i~~i~~~~~~~~~~~R~~gf~~---~l~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~ 176 (272)
T 3o74_A 117 S--SA-PRSIALIGARPELSVSQARAGGFDE---ALQGYTGEVRRYQGEAFSRE---CGQRLMQQLIDD 176 (272)
T ss_dssp T--TC-CSEEEEEEECTTSHHHHHHHHHHHH---HTTTCCSEEEEEEESSSSHH---HHHHHHHHHHHH
T ss_pred H--CC-CcEEEEEecCCCCccHHHHHHHHHH---HHHHcCCChheeecCCCCHH---HHHHHHHHHHhc
Confidence 2 23 67888885322 3334443 33332244444433445544 344455555543
No 50
>3e61_A Putative transcriptional repressor of ribose OPER; structural genomics, DNA-binding, transcripti regulation, PSI-2; 2.00A {Staphylococcus saprophyticus subsp}
Probab=69.64 E-value=65 Score=29.14 Aligned_cols=121 Identities=7% Similarity=0.025 Sum_probs=64.5
Q ss_pred CceEEEEccCCCCccHHHHHHHHHHHHHHhcCCeEEEEEcccccccccCCCCeEECChhhhhchhccCCccccccCCccc
Q 042534 80 NTRAAIVTCGGLCPGLNTVIRELVVGLWELYGVRQILGIQAGYRGFYSTTRNPLVLNPKMVRGWHKLGGTVLETSRGGFD 159 (447)
Q Consensus 80 ~~kiaIvtsGG~~PGlN~vIr~vv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~~~L~~~~v~~i~~~GGt~LGssR~~~~ 159 (447)
..+||++...-.-|=...++.++-..+. .+|+.-++. -+......
T Consensus 8 ~~~Ig~i~~~~~~~~~~~~~~gi~~~~~-~~g~~~~~~----------------------------------~~~~~~~~ 52 (277)
T 3e61_A 8 SKLIGLLLPDMSNPFFTLIARGVEDVAL-AHGYQVLIG----------------------------------NSDNDIKK 52 (277)
T ss_dssp --CEEEEESCTTSHHHHHHHHHHHHHHH-HTTCCEEEE----------------------------------ECTTCHHH
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHHHH-HCCCEEEEE----------------------------------eCCCCHHH
Confidence 4569999987777888888888888774 455421110 01111123
Q ss_pred HHHHHHHHHHcCCCEEEEecCCCcHHHHHHHHH-HHHHcCCcceEeeecccccccccCcCcccChhhHHHHHHHHHHHHH
Q 042534 160 LHQIVDAIQTNAFNQVYIIGGDGTMRGAVEIFD-EIQRRKINVGVVGIPKTVDNDVGIIDRSFGFQTAVEMAQQAISAAH 238 (447)
Q Consensus 160 ~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~~-~~~~~~~~i~VVgIPkTIDNDi~~tD~s~GFdTAv~~~~~ai~~i~ 238 (447)
..++++.+...++|++++.+.+ -. ..+ .+.+. +++||. +|++.+..+ ++++|-. ..+..+.+.+.
T Consensus 53 ~~~~~~~l~~~~~dgiIi~~~~--~~----~~~~~l~~~--~iPvV~----~~~~~~~~~-~V~~D~~-~~g~~a~~~L~ 118 (277)
T 3e61_A 53 AQGYLATFVSHNCTGMISTAFN--EN----IIENTLTDH--HIPFVF----IDRINNEHN-GISTNHF-KGGQLQAEVVR 118 (277)
T ss_dssp HHHHHHHHHHTTCSEEEECGGG--HH----HHHHHHHHC---CCEEE----GGGCC----------HH-HHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCEEEEecCC--hH----HHHHHHHcC--CCCEEE----EeccCCCCC-eEEechH-HHHHHHHHHHH
Confidence 4578888999999999999832 11 123 44444 566774 456655444 7777642 22233333333
Q ss_pred HhhhhcCCcEEEEE
Q 042534 239 VEAESAVNGIGLVK 252 (447)
Q Consensus 239 ~~A~S~~~~v~iVe 252 (447)
. .. |+++.++-
T Consensus 119 ~--~G-~~~i~~i~ 129 (277)
T 3e61_A 119 K--GK-GKNVLIVH 129 (277)
T ss_dssp H--TT-CCSEEEEE
T ss_pred H--CC-CCeEEEEe
Confidence 2 23 67888875
No 51
>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, SUG binding protein, structural genomics, PSI-2; 2.05A {Burkholderia phymatum}
Probab=69.47 E-value=69 Score=29.37 Aligned_cols=123 Identities=15% Similarity=0.088 Sum_probs=70.0
Q ss_pred CceEEEEccCCCCccHHHHHHHHHHHHHHhcCCeEEEEEcccccccccCCCCeEECChhhhhchhccCCccccccCCc-c
Q 042534 80 NTRAAIVTCGGLCPGLNTVIRELVVGLWELYGVRQILGIQAGYRGFYSTTRNPLVLNPKMVRGWHKLGGTVLETSRGG-F 158 (447)
Q Consensus 80 ~~kiaIvtsGG~~PGlN~vIr~vv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~~~L~~~~v~~i~~~GGt~LGssR~~-~ 158 (447)
..+||+++..-.-|=...++.++-+.+. .+|+ ++.-. ++... .
T Consensus 8 ~~~Ig~i~~~~~~~~~~~~~~gi~~~a~-~~g~-~~~~~----------------------------------~~~~~~~ 51 (290)
T 2rgy_A 8 LGIIGLFVPTFFGSYYGTILKQTDLELR-AVHR-HVVVA----------------------------------TGCGEST 51 (290)
T ss_dssp CCEEEEECSCSCSHHHHHHHHHHHHHHH-HTTC-EEEEE----------------------------------CCCSSSC
T ss_pred CCeEEEEeCCCCCchHHHHHHHHHHHHH-HCCC-EEEEE----------------------------------eCCCchh
Confidence 4579999977667778888888888774 4554 22110 01111 1
Q ss_pred cHHH---HHHHHHHcCCCEEEEecCCCcHHHHHHHHHHHHHcCCcceEeeecccccccccCcCcccChhh--HHHHHHHH
Q 042534 159 DLHQ---IVDAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGIPKTVDNDVGIIDRSFGFQT--AVEMAQQA 233 (447)
Q Consensus 159 ~~~~---iv~~l~~~~Id~L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVgIPkTIDNDi~~tD~s~GFdT--Av~~~~~a 233 (447)
...+ .++.+...++|++++.+.+.+... .+.+.+. +++||.+-..++++ --.++++|- +...+++
T Consensus 52 ~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~----~~~l~~~--~iPvV~~~~~~~~~---~~~~V~~D~~~~g~~a~~- 121 (290)
T 2rgy_A 52 PREQALEAVRFLIGRDCDGVVVISHDLHDED----LDELHRM--HPKMVFLNRAFDAL---PDASFCPDHRRGGELAAA- 121 (290)
T ss_dssp HHHHHHHHHHHHHHTTCSEEEECCSSSCHHH----HHHHHHH--CSSEEEESSCCTTS---GGGEECCCHHHHHHHHHH-
T ss_pred hhhhHHHHHHHHHhcCccEEEEecCCCCHHH----HHHHhhc--CCCEEEEccccCCC---CCCEEEeCcHHHHHHHHH-
Confidence 2345 788888999999999998766222 2333333 46677653333221 113455553 3333333
Q ss_pred HHHHHHhhhhcCCcEEEEEe
Q 042534 234 ISAAHVEAESAVNGIGLVKL 253 (447)
Q Consensus 234 i~~i~~~A~S~~~~v~iVev 253 (447)
.+.. .. |++|.++--
T Consensus 122 --~L~~--~G-~~~I~~i~~ 136 (290)
T 2rgy_A 122 --TLIE--HG-HRKLAVISG 136 (290)
T ss_dssp --HHHH--TT-CCSEEEEES
T ss_pred --HHHH--CC-CceEEEEeC
Confidence 3332 24 678888853
No 52
>3bil_A Probable LACI-family transcriptional regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum atcc 13032}
Probab=68.77 E-value=82 Score=30.00 Aligned_cols=166 Identities=9% Similarity=0.067 Sum_probs=84.5
Q ss_pred CceEEEEccCCCCccHHHHHHHHHHHHHHhcCCeEEEEEcccccccccCCCCeEECChhhhhchhccCCccccccCCc-c
Q 042534 80 NTRAAIVTCGGLCPGLNTVIRELVVGLWELYGVRQILGIQAGYRGFYSTTRNPLVLNPKMVRGWHKLGGTVLETSRGG-F 158 (447)
Q Consensus 80 ~~kiaIvtsGG~~PGlN~vIr~vv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~~~L~~~~v~~i~~~GGt~LGssR~~-~ 158 (447)
..+||++...-.-|-...++.++-+.+. .+|+. +. +..+... .
T Consensus 66 s~~Igvi~~~~~~~~~~~~~~gi~~~a~-~~g~~-~~----------------------------------~~~~~~~~~ 109 (348)
T 3bil_A 66 SNTIGVIVPSLINHYFAAMVTEIQSTAS-KAGLA-TI----------------------------------ITNSNEDAT 109 (348)
T ss_dssp --CEEEEESCSSSHHHHHHHHHHHHHHH-HTTCC-EE----------------------------------EEECTTCHH
T ss_pred CCEEEEEeCCCCCcHHHHHHHHHHHHHH-HcCCE-EE----------------------------------EEeCCCCHH
Confidence 3569999876667777788888887774 44431 11 0001111 1
Q ss_pred cHHHHHHHHHHcCCCEEEEecCCCcHHHHHHHHHHHHHcCCcceEeeecccccccccCcCcccChhh--HHHHHHHHHHH
Q 042534 159 DLHQIVDAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGIPKTVDNDVGIIDRSFGFQT--AVEMAQQAISA 236 (447)
Q Consensus 159 ~~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVgIPkTIDNDi~~tD~s~GFdT--Av~~~~~ai~~ 236 (447)
...+.++.|...++|++++.+.+.+-. ..+.+.+. +++||.+=..++++. .-.++++|- +...+++.
T Consensus 110 ~~~~~~~~l~~~~vdgiI~~~~~~~~~----~~~~l~~~--~iPvV~i~~~~~~~~--~~~~V~~D~~~~~~~a~~~--- 178 (348)
T 3bil_A 110 TMSGSLEFLTSHGVDGIICVPNEECAN----QLEDLQKQ--GMPVVLVDRELPGDS--TIPTATSNPQPGIAAAVEL--- 178 (348)
T ss_dssp HHHHHHHHHHHTTCSCEEECCCGGGHH----HHHHHHHC---CCEEEESSCCSCC---CCCEEEEECHHHHHHHHHH---
T ss_pred HHHHHHHHHHhCCCCEEEEeCCCCChH----HHHHHHhC--CCCEEEEcccCCCCC--CCCEEEeChHHHHHHHHHH---
Confidence 235678888899999999998765522 22334443 466776533333201 112455443 33333333
Q ss_pred HHHhhhhcCCcEEEEEec-------CCccchHHHHHhhccCCccEEecCCCCCCcchhhhHHHHHHHHHhhC
Q 042534 237 AHVEAESAVNGIGLVKLM-------GRSTGHIALHATLSSRDVDCCLIPEMEFYLEGKGGLVEFLDNRLKEN 301 (447)
Q Consensus 237 i~~~A~S~~~~v~iVevM-------GR~sG~lAl~aaLA~~~ad~ilIPE~~f~le~~~~l~~~i~~r~~~k 301 (447)
+.. .. |++|.++--. -|..||..+.....- ..++++ +..++.+ .-.+.+++.++..
T Consensus 179 L~~--~G-~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~-~~~~v~--~~~~~~~---~~~~~~~~ll~~~ 241 (348)
T 3bil_A 179 LAH--NN-ALPIGYLSGPMDTSTGRERLEDFKAACANSKI-GEQLVF--LGGYEQS---VGFEGATKLLDQG 241 (348)
T ss_dssp HHH--TT-CCSEEEECCCTTSHHHHHHHHHHHHHHHHTTC-CCCEEE--CCCSSHH---HHHHHHHHHHHTT
T ss_pred HHH--CC-CCeEEEEeCCCCCccHHHHHHHHHHHHHHcCc-CccEEE--cCCCCHH---HHHHHHHHHHcCC
Confidence 322 24 6789888532 144566654332211 234433 3345444 2334455555543
No 53
>3s40_A Diacylglycerol kinase; structural genomics, the center for structural genomics of infectious diseases, csgid, transfer; 2.10A {Bacillus anthracis} PDB: 3t5p_A
Probab=66.72 E-value=2.9 Score=40.48 Aligned_cols=52 Identities=19% Similarity=0.317 Sum_probs=36.8
Q ss_pred HHHHHHHHHHcCCCEEEEecCCCcHHHHHHHHHHHHHcCCcceEeeeccccccccc
Q 042534 160 LHQIVDAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGIPKTVDNDVG 215 (447)
Q Consensus 160 ~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVgIPkTIDNDi~ 215 (447)
..++++.+.+ +.|.++++|||||+..+.. .+..++.++++-.||.==-||+.
T Consensus 53 a~~~~~~~~~-~~d~vv~~GGDGTl~~v~~---~l~~~~~~~~l~iiP~Gt~N~~a 104 (304)
T 3s40_A 53 ATKYCQEFAS-KVDLIIVFGGDGTVFECTN---GLAPLEIRPTLAIIPGGTCNDFS 104 (304)
T ss_dssp HHHHHHHHTT-TCSEEEEEECHHHHHHHHH---HHTTCSSCCEEEEEECSSCCHHH
T ss_pred HHHHHHHhhc-CCCEEEEEccchHHHHHHH---HHhhCCCCCcEEEecCCcHHHHH
Confidence 4455555543 8899999999999886432 22223356889999988788886
No 54
>3o1i_D Periplasmic protein TORT; ligand free, two component sensor, periplasmic binding prote signaling protein; HET: PE4; 2.80A {Vibrio parahaemolyticus} PDB: 3o1h_B* 3o1j_C
Probab=66.21 E-value=31 Score=31.74 Aligned_cols=70 Identities=11% Similarity=-0.071 Sum_probs=47.4
Q ss_pred CCceEEEEccCCCCccHHHHHHHHHHHHHHhcCCeEEEEEcccccccccCCCCeEECChhhhhchhccCCccccccC--C
Q 042534 79 KNTRAAIVTCGGLCPGLNTVIRELVVGLWELYGVRQILGIQAGYRGFYSTTRNPLVLNPKMVRGWHKLGGTVLETSR--G 156 (447)
Q Consensus 79 ~~~kiaIvtsGG~~PGlN~vIr~vv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~~~L~~~~v~~i~~~GGt~LGssR--~ 156 (447)
+..+||++...-.-|-...++.++-+.+. .+|+. +.-+ .+.. .
T Consensus 4 ~~~~Igvi~~~~~~~~~~~~~~g~~~~a~-~~g~~-~~~~---------------------------------~~~~~~~ 48 (304)
T 3o1i_D 4 SDEKICAIYPHLKDSYWLSVNYGMVSEAE-KQGVN-LRVL---------------------------------EAGGYPN 48 (304)
T ss_dssp -CCEEEEEESCSCSHHHHHHHHHHHHHHH-HHTCE-EEEE---------------------------------ECSSTTC
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHHH-HcCCe-EEEE---------------------------------cCCCCCC
Confidence 34689999988788888889999988874 45542 2110 0111 1
Q ss_pred cccHHHHHHHHHHcCCCEEEEecCCCc
Q 042534 157 GFDLHQIVDAIQTNAFNQVYIIGGDGT 183 (447)
Q Consensus 157 ~~~~~~iv~~l~~~~Id~L~vIGGdgS 183 (447)
.....+.++.+...++|++++.+.+..
T Consensus 49 ~~~~~~~~~~~~~~~vdgiii~~~~~~ 75 (304)
T 3o1i_D 49 KSRQEQQLALCTQWGANAIILGTVDPH 75 (304)
T ss_dssp HHHHHHHHHHHHHHTCSEEEECCSSTT
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCChh
Confidence 123456788888899999999987765
No 55
>3clk_A Transcription regulator; 11017J, PSI-II, NYSGXRC, dimer, structural genomics, protein structure initiative; 2.08A {Lactobacillus plantarum WCFS1}
Probab=66.01 E-value=69 Score=29.30 Aligned_cols=123 Identities=11% Similarity=-0.004 Sum_probs=64.9
Q ss_pred CceEEEEccCCCCccHHHHHHHHHHHHHHhcCCeEEEEEcccccccccCCCCeEECChhhhhchhccCCccccccCCccc
Q 042534 80 NTRAAIVTCGGLCPGLNTVIRELVVGLWELYGVRQILGIQAGYRGFYSTTRNPLVLNPKMVRGWHKLGGTVLETSRGGFD 159 (447)
Q Consensus 80 ~~kiaIvtsGG~~PGlN~vIr~vv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~~~L~~~~v~~i~~~GGt~LGssR~~~~ 159 (447)
..+||+++..-..|-...++.++-+.+. .+|+ ++.-.. +.+ .....
T Consensus 8 ~~~Ig~i~~~~~~~~~~~~~~gi~~~a~-~~g~-~~~~~~-------~~~-------------------------~~~~~ 53 (290)
T 3clk_A 8 SNVIAAVVSSVRTNFAQQILDGIQEEAH-KNGY-NLIIVY-------SGS-------------------------ADPEE 53 (290)
T ss_dssp CCEEEEECCCCSSSHHHHHHHHHHHHHH-TTTC-EEEEEC----------------------------------------
T ss_pred CCEEEEEeCCCCChHHHHHHHHHHHHHH-HcCC-eEEEEe-------CCC-------------------------CCHHH
Confidence 4579999987778888888999988874 4554 222110 000 00011
Q ss_pred HHHHHHHHHHcCCCEEEEecCCCcHHHHHHHHHHHHHcCCcceEeeecccccccccCcCcccChhh--HHHHHHHHHHHH
Q 042534 160 LHQIVDAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGIPKTVDNDVGIIDRSFGFQT--AVEMAQQAISAA 237 (447)
Q Consensus 160 ~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVgIPkTIDNDi~~tD~s~GFdT--Av~~~~~ai~~i 237 (447)
..+.++.+...++|++++.+.+.+-. ..+.+.+ .+++||.+-...+++ -.++++|- +...+++ .+
T Consensus 54 ~~~~~~~l~~~~vdgiI~~~~~~~~~----~~~~l~~--~~iPvV~~~~~~~~~----~~~V~~D~~~~g~~a~~---~L 120 (290)
T 3clk_A 54 QKHALLTAIERPVMGILLLSIALTDD----NLQLLQS--SDVPYCFLSMGFDDD----RPFISSDDEDIGYQATN---LL 120 (290)
T ss_dssp --CHHHHHHSSCCSEEEEESCC--------CHHHHHC--C--CEEEESCC--CC----SCEEECCHHHHHHHHHH---HH
T ss_pred HHHHHHHHHhcCCCEEEEecccCCHH----HHHHHHh--CCCCEEEEcCCCCCC----CCEEEeChHHHHHHHHH---HH
Confidence 23466777888999999998775422 2233333 357788764444432 23455553 3333333 33
Q ss_pred HHhhhhcCCcEEEEE
Q 042534 238 HVEAESAVNGIGLVK 252 (447)
Q Consensus 238 ~~~A~S~~~~v~iVe 252 (447)
.. .. +++|.++-
T Consensus 121 ~~--~G-~~~i~~i~ 132 (290)
T 3clk_A 121 IN--EG-HRQIGIAG 132 (290)
T ss_dssp HT--TT-CCSEEEES
T ss_pred HH--cC-CCEEEEEe
Confidence 32 23 67888874
No 56
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}
Probab=65.85 E-value=82 Score=28.89 Aligned_cols=133 Identities=11% Similarity=0.042 Sum_probs=74.7
Q ss_pred CceEEEEccCCCCccHHHHHHHHHHHHHHhcCCeEEEEEcccccccccCCCCeEECChhhhhchhccCCccccccCCccc
Q 042534 80 NTRAAIVTCGGLCPGLNTVIRELVVGLWELYGVRQILGIQAGYRGFYSTTRNPLVLNPKMVRGWHKLGGTVLETSRGGFD 159 (447)
Q Consensus 80 ~~kiaIvtsGG~~PGlN~vIr~vv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~~~L~~~~v~~i~~~GGt~LGssR~~~~ 159 (447)
..+||+++ .-.-|-...++.++-+.+. .+|+. +.-+ .+....+
T Consensus 12 ~~~Igvi~-~~~~~~~~~~~~gi~~~a~-~~g~~-~~~~----------------------------------~~~~~~~ 54 (289)
T 3k9c_A 12 SRLLGVVF-ELQQPFHGDLVEQIYAAAT-RRGYD-VMLS----------------------------------AVAPSRA 54 (289)
T ss_dssp -CEEEEEE-ETTCHHHHHHHHHHHHHHH-HTTCE-EEEE----------------------------------EEBTTBC
T ss_pred CCEEEEEE-ecCCchHHHHHHHHHHHHH-HCCCE-EEEE----------------------------------eCCCCHH
Confidence 46799998 6677888888999888874 45642 2211 0111112
Q ss_pred HHHHHHHHHHcCCCEEEEecCCCcHHHHHHHHHHHHHcCCcceEeeecccccccccCc-CcccChhhHHHHHHHHHHHHH
Q 042534 160 LHQIVDAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGIPKTVDNDVGII-DRSFGFQTAVEMAQQAISAAH 238 (447)
Q Consensus 160 ~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVgIPkTIDNDi~~t-D~s~GFdTAv~~~~~ai~~i~ 238 (447)
..+.++.|...++|++++.+.+.+.. ..+.+.+ +++||.+ |++++.. -.++++|- ...+..+.+.+.
T Consensus 55 ~~~~~~~l~~~~vdgiIi~~~~~~~~----~~~~~~~---~iPvV~i----~~~~~~~~~~~V~~D~-~~~~~~a~~~L~ 122 (289)
T 3k9c_A 55 EKVAVQALMRERCEAAILLGTRFDTD----ELGALAD---RVPALVV----ARASGLPGVGAVRGDD-VAGITLAVDHLT 122 (289)
T ss_dssp HHHHHHHHTTTTEEEEEEETCCCCHH----HHHHHHT---TSCEEEE----SSCCSSTTSEEEEECH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCEEEEECCCCCHH----HHHHHHc---CCCEEEE----cCCCCCCCCCEEEeCh-HHHHHHHHHHHH
Confidence 45677888889999999999887652 2233332 5677754 4444321 13455443 122222333333
Q ss_pred HhhhhcCCcEEEEEecC------CccchHHHH
Q 042534 239 VEAESAVNGIGLVKLMG------RSTGHIALH 264 (447)
Q Consensus 239 ~~A~S~~~~v~iVevMG------R~sG~lAl~ 264 (447)
. .. |++|.++--.. |..||..+.
T Consensus 123 ~--~G-~~~I~~i~~~~~~~~~~R~~Gf~~al 151 (289)
T 3k9c_A 123 E--LG-HRNIAHIDGADAPGGADRRAGFLAAM 151 (289)
T ss_dssp H--TT-CCSEEEECCTTSTTHHHHHHHHHHHH
T ss_pred H--CC-CCcEEEEeCCCCccHHHHHHHHHHHH
Confidence 2 24 67888885332 445665543
No 57
>3iv7_A Alcohol dehydrogenase IV; NP_602249.1, iron-containing alcohol dehydrogenase, structur genomics, joint center for structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum}
Probab=64.98 E-value=6 Score=39.63 Aligned_cols=49 Identities=20% Similarity=0.235 Sum_probs=41.5
Q ss_pred cHHHHHHHHHHcCCCEEEEecCCCcHHHHHHHHHHHHHcCCcceEeeeccccccc
Q 042534 159 DLHQIVDAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGIPKTVDND 213 (447)
Q Consensus 159 ~~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVgIPkTIDND 213 (447)
.++++++.+++.+.|.++-|||--++..|..++-. + .+++|.||-|- .|
T Consensus 76 ~v~~~~~~~~~~~~D~IIavGGGs~iD~aK~iA~~---~--~~P~i~IPTTa-tg 124 (364)
T 3iv7_A 76 VAERARAVATDNEIDLLVCVGGGSTIGLAKAIAMT---T--ALPIVAIPTTY-AG 124 (364)
T ss_dssp HHHHHHHHHHHTTCCEEEEEESHHHHHHHHHHHHH---H--CCCEEEEECSS-SC
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcHHHHHHHHHHhc---c--CCCEEEEcCCc-cc
Confidence 47889999999999999999998888888888753 2 57899999997 54
No 58
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=64.44 E-value=84 Score=28.55 Aligned_cols=90 Identities=10% Similarity=0.077 Sum_probs=56.3
Q ss_pred CCceEEEEccCCCCccHHHHHHHHHHHHHHhcCCeEEEEEcccccccccCCCCeEECChhhhhchhccCCccccccCCcc
Q 042534 79 KNTRAAIVTCGGLCPGLNTVIRELVVGLWELYGVRQILGIQAGYRGFYSTTRNPLVLNPKMVRGWHKLGGTVLETSRGGF 158 (447)
Q Consensus 79 ~~~kiaIvtsGG~~PGlN~vIr~vv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~~~L~~~~v~~i~~~GGt~LGssR~~~ 158 (447)
+..+||++...-.-|=...++.++-+.+. .+|+. +.-+. +.....
T Consensus 7 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~-~~g~~-~~~~~---------------------------------~~~~~~ 51 (293)
T 3l6u_A 7 KRNIVGFTIVNDKHEFAQRLINAFKAEAK-ANKYE-ALVAT---------------------------------SQNSRI 51 (293)
T ss_dssp --CEEEEEESCSCSHHHHHHHHHHHHHHH-HTTCE-EEEEE---------------------------------CSSCHH
T ss_pred CCcEEEEEEecCCcHHHHHHHHHHHHHHH-HcCCE-EEEEC---------------------------------CCCCHH
Confidence 34679999988888888889999988874 45542 22110 111112
Q ss_pred cHHHHHHHHHHcCCCEEEEecCCCcHHHHHHHHHHHHHcCCcceEeeec
Q 042534 159 DLHQIVDAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGIP 207 (447)
Q Consensus 159 ~~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVgIP 207 (447)
...+.++.|.+.++|++++.+.+.+... .+.+.+.+. +++||.+=
T Consensus 52 ~~~~~~~~l~~~~vdgiI~~~~~~~~~~--~~~~~~~~~--~iPvV~~~ 96 (293)
T 3l6u_A 52 SEREQILEFVHLKVDAIFITTLDDVYIG--SAIEEAKKA--GIPVFAID 96 (293)
T ss_dssp HHHHHHHHHHHTTCSEEEEECSCTTTTH--HHHHHHHHT--TCCEEEES
T ss_pred HHHHHHHHHHHcCCCEEEEecCChHHHH--HHHHHHHHc--CCCEEEec
Confidence 2457788888999999999988765421 122333334 56777653
No 59
>3uhj_A Probable glycerol dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.34A {Sinorhizobium meliloti}
Probab=63.95 E-value=7.2 Score=39.36 Aligned_cols=47 Identities=13% Similarity=0.161 Sum_probs=40.1
Q ss_pred cHHHHHHHHHHcCCCEEEEecCCCcHHHHHHHHHHHHHcCCcceEeeecccc
Q 042534 159 DLHQIVDAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGIPKTV 210 (447)
Q Consensus 159 ~~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVgIPkTI 210 (447)
.++++++.+++.+.|.+|-|||--++..|..++-. .++++|.||-|-
T Consensus 94 ~v~~~~~~~~~~~~d~IIavGGGs~~D~AK~iA~~-----~~~p~i~IPTTa 140 (387)
T 3uhj_A 94 EIERVRKVAIEHGSDILVGVGGGKTADTAKIVAID-----TGARIVIAPTIA 140 (387)
T ss_dssp HHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHH-----TTCEEEECCSSC
T ss_pred HHHHHHHHHhhcCCCEEEEeCCcHHHHHHHHHHHh-----cCCCEEEecCcc
Confidence 47889999999999999999998888888888732 368899999993
No 60
>1oj7_A Hypothetical oxidoreductase YQHD; structural genomics; HET: NZQ; 2.0A {Escherichia coli} SCOP: e.22.1.2
Probab=63.65 E-value=5.1 Score=40.55 Aligned_cols=52 Identities=12% Similarity=0.151 Sum_probs=41.4
Q ss_pred cHHHHHHHHHHcCCCEEEEecCCCcHHHHHHHHHHHHHcC----------------CcceEeeecccc
Q 042534 159 DLHQIVDAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQRRK----------------INVGVVGIPKTV 210 (447)
Q Consensus 159 ~~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~~~~~~~~----------------~~i~VVgIPkTI 210 (447)
.++++++.+++.+.|.+|-|||--.+..|..++-.....+ -.+++|.||-|-
T Consensus 94 ~v~~~~~~~~~~~~D~IIavGGGsviD~AK~iA~~~~~~~~~~~~d~~~~~~~~~~~~~p~i~IPTTa 161 (408)
T 1oj7_A 94 TLMNAVKLVREQKVTFLLAVGGGSVLDGTKFIAAAANYPENIDPWHILQTGGKEIKSAIPMGCVLTLP 161 (408)
T ss_dssp HHHHHHHHHHHHTCCEEEEEESHHHHHHHHHHHHHTTSCTTSCTTHHHHTTTTTCCCCCCEEEEESSC
T ss_pred HHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHhCCCCCCHHHHhccccCcCCCCCCEEEEeCCC
Confidence 4678999999999999999999888888888776432111 358899999985
No 61
>3hl0_A Maleylacetate reductase; structur genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE NAD EPE; 1.60A {Agrobacterium tumefaciens str}
Probab=63.45 E-value=8.2 Score=38.40 Aligned_cols=49 Identities=20% Similarity=0.188 Sum_probs=41.3
Q ss_pred cHHHHHHHHHHcCCCEEEEecCCCcHHHHHHHHHHHHHcCCcceEeeeccccccc
Q 042534 159 DLHQIVDAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGIPKTVDND 213 (447)
Q Consensus 159 ~~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVgIPkTIDND 213 (447)
.++++++.+++.+.|.++-|||--++..|..++-. + ++++|.||-|- .|
T Consensus 75 ~v~~~~~~~~~~~~D~IIavGGGs~iD~aK~iA~~---~--~~p~i~IPTTa-tg 123 (353)
T 3hl0_A 75 VTKTAVEAYRAAGADCVVSLGGGSTTGLGKAIALR---T--DAAQIVIPTTY-AG 123 (353)
T ss_dssp HHHHHHHHHHHTTCSEEEEEESHHHHHHHHHHHHH---H--CCEEEEEECSS-CC
T ss_pred HHHHHHHHHhccCCCEEEEeCCcHHHHHHHHHHhc---c--CCCEEEEeCCc-hh
Confidence 47889999999999999999998888888887752 2 67899999997 54
No 62
>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus}
Probab=63.23 E-value=68 Score=29.65 Aligned_cols=133 Identities=11% Similarity=-0.020 Sum_probs=74.7
Q ss_pred CceEEEEccC-----CCCccHHHHHHHHHHHHHHhcCCeEEEEEcccccccccCCCCeEECChhhhhchhccCCcccccc
Q 042534 80 NTRAAIVTCG-----GLCPGLNTVIRELVVGLWELYGVRQILGIQAGYRGFYSTTRNPLVLNPKMVRGWHKLGGTVLETS 154 (447)
Q Consensus 80 ~~kiaIvtsG-----G~~PGlN~vIr~vv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~~~L~~~~v~~i~~~GGt~LGss 154 (447)
..+||+++.. -.-|=...++.++-..+. .+|+ ++.- ..+
T Consensus 22 ~~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~-~~g~-~~~~----------------------------------~~~ 65 (305)
T 3huu_A 22 TLTIGLIQKSSAPEIRQNPFNSDVLNGINQACN-VRGY-STRM----------------------------------TVS 65 (305)
T ss_dssp CCEEEEECSCCSHHHHTSHHHHHHHHHHHHHHH-HHTC-EEEE----------------------------------CCC
T ss_pred CCEEEEEeCCCccccccCcHHHHHHHHHHHHHH-HCCC-EEEE----------------------------------EeC
Confidence 4679999977 566777788888888774 4454 2211 011
Q ss_pred CCc-ccHHHHHHHHHHcCCCEEEEecCCCcHHHHHHHHHHHHHcCCcceEeeecccccccccCc-CcccChh--hHHHHH
Q 042534 155 RGG-FDLHQIVDAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGIPKTVDNDVGII-DRSFGFQ--TAVEMA 230 (447)
Q Consensus 155 R~~-~~~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVgIPkTIDNDi~~t-D~s~GFd--TAv~~~ 230 (447)
... ....++++.+...++|++++.+.+.+-.. .+.+.+. +++||.+ |+++... ..++++| .+...+
T Consensus 66 ~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~----~~~l~~~--~iPvV~i----~~~~~~~~~~~V~~D~~~~g~~a 135 (305)
T 3huu_A 66 ENSGDLYHEVKTMIQSKSVDGFILLYSLKDDPI----EHLLNEF--KVPYLIV----GKSLNYENIIHIDNDNIDAAYQL 135 (305)
T ss_dssp SSHHHHHHHHHHHHHTTCCSEEEESSCBTTCHH----HHHHHHT--TCCEEEE----SCCCSSTTCCEEECCHHHHHHHH
T ss_pred CCChHHHHHHHHHHHhCCCCEEEEeCCcCCcHH----HHHHHHc--CCCEEEE----CCCCcccCCcEEEeCHHHHHHHH
Confidence 111 12457888899999999999987765432 2333344 5667754 4443211 2344444 233333
Q ss_pred HHHHHHHHHhhhhcCCcEEEEEec-------CCccchHHHH
Q 042534 231 QQAISAAHVEAESAVNGIGLVKLM-------GRSTGHIALH 264 (447)
Q Consensus 231 ~~ai~~i~~~A~S~~~~v~iVevM-------GR~sG~lAl~ 264 (447)
++.+ .. .. |++|.++--. -|..||..+.
T Consensus 136 ~~~L---~~--~G-~~~I~~i~~~~~~~~~~~R~~Gf~~~l 170 (305)
T 3huu_A 136 TQYL---YH--LG-HRHILFLQESGHYAVTEDRSVGFKQYC 170 (305)
T ss_dssp HHHH---HH--TT-CCSEEEEEESSCBHHHHHHHHHHHHHH
T ss_pred HHHH---HH--CC-CCeEEEEcCCcccchhHHHHHHHHHHH
Confidence 3332 21 23 6788888532 2455665543
No 63
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=62.88 E-value=90 Score=28.32 Aligned_cols=128 Identities=9% Similarity=0.037 Sum_probs=74.2
Q ss_pred ceEEEEccCCCCccHHHHHHHHHHHHHHhcCCeEEEEEcccccccccCCCCeEECChhhhhchhccCCccccccCCcccH
Q 042534 81 TRAAIVTCGGLCPGLNTVIRELVVGLWELYGVRQILGIQAGYRGFYSTTRNPLVLNPKMVRGWHKLGGTVLETSRGGFDL 160 (447)
Q Consensus 81 ~kiaIvtsGG~~PGlN~vIr~vv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~~~L~~~~v~~i~~~GGt~LGssR~~~~~ 160 (447)
.+||+++..-.-|-...++.++-+.+. .+|+. +.-+. +.......
T Consensus 16 ~~Igvi~~~~~~~~~~~~~~gi~~~a~-~~g~~-~~~~~---------------------------------~~~~~~~~ 60 (298)
T 3tb6_A 16 KTIGVLTTYISDYIFPSIIRGIESYLS-EQGYS-MLLTS---------------------------------TNNNPDNE 60 (298)
T ss_dssp CEEEEEESCSSSTTHHHHHHHHHHHHH-HTTCE-EEEEE---------------------------------CTTCHHHH
T ss_pred ceEEEEeCCCCchHHHHHHHHHHHHHH-HCCCE-EEEEe---------------------------------CCCChHHH
Confidence 579999988888999999999988884 45652 22110 01111234
Q ss_pred HHHHHHHHHcCCCEEEEecCCCcHH-HHHHHHHHHHHcCCcceEeeecccccccccCcC-cccChhhHHHHHHHHHHHHH
Q 042534 161 HQIVDAIQTNAFNQVYIIGGDGTMR-GAVEIFDEIQRRKINVGVVGIPKTVDNDVGIID-RSFGFQTAVEMAQQAISAAH 238 (447)
Q Consensus 161 ~~iv~~l~~~~Id~L~vIGGdgS~~-~A~~L~~~~~~~~~~i~VVgIPkTIDNDi~~tD-~s~GFdTAv~~~~~ai~~i~ 238 (447)
.+.++.|...++|++++.+.+.+.. ....+.+++.+. +++||.+ |++.+... .++++|- .+.+..+.+.+.
T Consensus 61 ~~~~~~l~~~~vdgiIi~~~~~~~~~~~~~~~~~~~~~--~iPvV~~----~~~~~~~~~~~V~~d~-~~~~~~a~~~L~ 133 (298)
T 3tb6_A 61 RRGLENLLSQHIDGLIVEPTKSALQTPNIGYYLNLEKN--GIPFAMI----NASYAELAAPSFTLDD-VKGGMMAAEHLL 133 (298)
T ss_dssp HHHHHHHHHTCCSEEEECCSSTTSCCTTHHHHHHHHHT--TCCEEEE----SSCCTTCSSCEEEECH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCEEEEecccccccCCcHHHHHHHHhc--CCCEEEE----ecCcCCCCCCEEEeCc-HHHHHHHHHHHH
Confidence 5788888899999999999875421 111223344444 5667754 44443222 3455443 122233333333
Q ss_pred HhhhhcCCcEEEEEe
Q 042534 239 VEAESAVNGIGLVKL 253 (447)
Q Consensus 239 ~~A~S~~~~v~iVev 253 (447)
. .. |++|.++--
T Consensus 134 ~--~G-~~~i~~i~~ 145 (298)
T 3tb6_A 134 S--LG-HTHMMGIFK 145 (298)
T ss_dssp H--TT-CCSEEEEEE
T ss_pred H--CC-CCcEEEEcC
Confidence 2 23 678888753
No 64
>3jzd_A Iron-containing alcohol dehydrogenase; YP_298327.1, putative alcohol dehedrogenase, structural GENO joint center for structural genomics; HET: MSE NAD PG4 P6G PGE; 2.10A {Ralstonia eutropha}
Probab=62.85 E-value=6.5 Score=39.24 Aligned_cols=47 Identities=19% Similarity=0.210 Sum_probs=39.8
Q ss_pred cHHHHHHHHHHcCCCEEEEecCCCcHHHHHHHHHHHHHcCCcceEeeecccc
Q 042534 159 DLHQIVDAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGIPKTV 210 (447)
Q Consensus 159 ~~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVgIPkTI 210 (447)
..+++++.+++.+.|.++-|||--++..|..++-. + .+++|.||-|-
T Consensus 77 ~v~~~~~~~~~~~~D~IIavGGGsviD~aK~iA~~---~--~~p~i~IPTT~ 123 (358)
T 3jzd_A 77 SARDATARAREAGADCAVAVGGGSTTGLGKAIALE---T--GMPIVAIPTTY 123 (358)
T ss_dssp HHHHHHHHHHHHTCSEEEEEESHHHHHHHHHHHHH---H--CCCEEEEECSS
T ss_pred HHHHHHHHhhccCCCEEEEeCCcHHHHHHHHHHhc---c--CCCEEEEeCCc
Confidence 46789999999999999999998888888888752 2 57899999984
No 65
>3ox4_A Alcohol dehydrogenase 2; iron, NAD, oxidoreductase; HET: NAD; 2.00A {Zymomonas mobilis} PDB: 3owo_A*
Probab=61.76 E-value=8.2 Score=38.75 Aligned_cols=56 Identities=16% Similarity=0.128 Sum_probs=43.8
Q ss_pred cHHHHHHHHHHcCCCEEEEecCCCcHHHHHHHHHHHHHc-------------CCcceEeeecccccccc
Q 042534 159 DLHQIVDAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQRR-------------KINVGVVGIPKTVDNDV 214 (447)
Q Consensus 159 ~~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~~~~~~~-------------~~~i~VVgIPkTIDNDi 214 (447)
.++++++.+++.+.|.++-|||--++..|..++-..... .-.+++|.||-|--.|-
T Consensus 76 ~v~~~~~~~~~~~~D~IIavGGGsv~D~aK~ia~~~~~~~~~~d~~~~~~~~~~~~p~i~IPTTagtgS 144 (383)
T 3ox4_A 76 AVLEGLKILKDNNSDFVISLGGGSPHDCAKAIALVATNGGEVKDYEGIDKSKKPALPLMSINTTAGTAS 144 (383)
T ss_dssp HHHHHHHHHHHHTCSEEEEEESHHHHHHHHHHHHHHHSCSSGGGGCEESCCSSCCSCEEEEECSSSCCT
T ss_pred HHHHHHHHHHhcCcCEEEEeCCcHHHHHHHHHHHHHhCCCCHHHHhcccccccCCCCEEEEeCCCCchh
Confidence 478899999999999999999988888888887654211 12578999999975443
No 66
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=61.47 E-value=97 Score=28.27 Aligned_cols=122 Identities=11% Similarity=-0.028 Sum_probs=67.4
Q ss_pred CceEEEEccCCCC--ccHHHHHHHHHHHHHHhcCCeEEEEEcccccccccCCCCeEECChhhhhchhccCCccccccCCc
Q 042534 80 NTRAAIVTCGGLC--PGLNTVIRELVVGLWELYGVRQILGIQAGYRGFYSTTRNPLVLNPKMVRGWHKLGGTVLETSRGG 157 (447)
Q Consensus 80 ~~kiaIvtsGG~~--PGlN~vIr~vv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~~~L~~~~v~~i~~~GGt~LGssR~~ 157 (447)
..+||++...-.- |=...++.++-+.+. .+|+ ++. +. + +....
T Consensus 8 s~~Igvv~~~~~~~~~~~~~~~~gi~~~a~-~~g~-~~~---------~~--------~----------------~~~~~ 52 (288)
T 3gv0_A 8 TNVIALVLSVDEELMGFTSQMVFGITEVLS-TTQY-HLV---------VT--------P----------------HIHAK 52 (288)
T ss_dssp CCEEEEECBCCCCSSCHHHHHHHHHHHHHT-TSSC-EEE---------EC--------C----------------BSSGG
T ss_pred CCEEEEEecCCccccHHHHHHHHHHHHHHH-HcCC-EEE---------Ee--------c----------------CCcch
Confidence 4679999875443 778888888887773 4443 121 10 0 00001
Q ss_pred ccHHHHHHHHHHcCCCEEEEecCCCcHHHHHHHHHHHHHcCCcceEeeecccccccccCcC-cccChhh--HHHHHHHHH
Q 042534 158 FDLHQIVDAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGIPKTVDNDVGIID-RSFGFQT--AVEMAQQAI 234 (447)
Q Consensus 158 ~~~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVgIPkTIDNDi~~tD-~s~GFdT--Av~~~~~ai 234 (447)
....++.+.+...++|++++.+.+.+-... +.+.+. +++||. +|++.+..+ .++++|- +...+++
T Consensus 53 ~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~----~~l~~~--~iPvV~----i~~~~~~~~~~~V~~D~~~~g~~a~~-- 120 (288)
T 3gv0_A 53 DSMVPIRYILETGSADGVIISKIEPNDPRV----RFMTER--NMPFVT----HGRSDMGIEHAFHDFDNEAYAYEAVE-- 120 (288)
T ss_dssp GTTHHHHHHHHHTCCSEEEEESCCTTCHHH----HHHHHT--TCCEEE----ESCCCSSCCCEEEEECHHHHHHHHHH--
T ss_pred hHHHHHHHHHHcCCccEEEEecCCCCcHHH----HHHhhC--CCCEEE----ECCcCCCCCCcEEEeCcHHHHHHHHH--
Confidence 123566777888999999999876554332 333333 566774 455443221 3455553 3333333
Q ss_pred HHHHHhhhhcCCcEEEEE
Q 042534 235 SAAHVEAESAVNGIGLVK 252 (447)
Q Consensus 235 ~~i~~~A~S~~~~v~iVe 252 (447)
.+.. .. +++|.++-
T Consensus 121 -~L~~--~G-~~~I~~i~ 134 (288)
T 3gv0_A 121 -RLAQ--CG-RKRIAVIV 134 (288)
T ss_dssp -HHHH--TT-CCEEEEEC
T ss_pred -HHHH--CC-CCeEEEEc
Confidence 3322 23 67888874
No 67
>3lkb_A Probable branched-chain amino acid ABC transporter, amino acid binding protein; branched amino acid, PSI-II, NYSGXRC, structural genomics; 2.40A {Thermus thermophilus}
Probab=60.10 E-value=36 Score=32.78 Aligned_cols=107 Identities=8% Similarity=0.082 Sum_probs=65.0
Q ss_pred CccHHHHHHHHHHHHHHhcCCeEEEEEcccccccccCCCCeEECChhhhhchhccCCccccccC---CcccHHHHHHHHH
Q 042534 92 CPGLNTVIRELVVGLWELYGVRQILGIQAGYRGFYSTTRNPLVLNPKMVRGWHKLGGTVLETSR---GGFDLHQIVDAIQ 168 (447)
Q Consensus 92 ~PGlN~vIr~vv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~~~L~~~~v~~i~~~GGt~LGssR---~~~~~~~iv~~l~ 168 (447)
+|--+...+.+++.+.+.+|+++|.-+..-.. +. ........+.+...|+.+..... ...|....+..++
T Consensus 123 ~~~~~~~~~~~~~~l~~~~g~~~iaii~~~~~--~g-----~~~~~~~~~~l~~~G~~v~~~~~~~~~~~d~~~~~~~l~ 195 (392)
T 3lkb_A 123 TTSYSEQVVALLEYIAREKKGAKVALVVHPSP--FG-----RAPVEDARKAARELGLQIVDVQEVGSGNLDNTALLKRFE 195 (392)
T ss_dssp ECCHHHHHHHHHHHHHHHCTTCEEEEEECSSH--HH-----HTTHHHHHHHHHHHTCEEEEEEECCTTCCCCHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHhCCCCEEEEEEeCCc--hh-----hhHHHHHHHHHHHcCCeEEEEEeeCCCCcCHHHHHHHHH
Confidence 34456667778887766567777665532110 00 00111122334456776655432 2346778888999
Q ss_pred HcCCCEEEEecCCCcHHHHHHHHHHHHHcCCcceEeeecc
Q 042534 169 TNAFNQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGIPK 208 (447)
Q Consensus 169 ~~~Id~L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVgIPk 208 (447)
+.+.|++|+.+-+ ..+..+.+.+++.|+++++++...
T Consensus 196 ~~~~dav~~~~~~---~~a~~~~~~~~~~g~~~~~~~~~~ 232 (392)
T 3lkb_A 196 QAGVEYVVHQNVA---GPVANILKDAKRLGLKMRHLGAHY 232 (392)
T ss_dssp HTTCCEEEEESCH---HHHHHHHHHHHHTTCCCEEEECGG
T ss_pred hcCCCEEEEecCc---chHHHHHHHHHHcCCCceEEEecC
Confidence 9999999887633 344556677888999888877543
No 68
>1rrm_A Lactaldehyde reductase; structural genomics, dehydrogenase, PSI, protein structure initiative; HET: APR; 1.60A {Escherichia coli} SCOP: e.22.1.2 PDB: 2bi4_A* 2bl4_A*
Probab=60.02 E-value=8.7 Score=38.37 Aligned_cols=55 Identities=16% Similarity=0.177 Sum_probs=43.4
Q ss_pred cHHHHHHHHHHcCCCEEEEecCCCcHHHHHHHHHHHHHcC---------------CcceEeeeccccccc
Q 042534 159 DLHQIVDAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQRRK---------------INVGVVGIPKTVDND 213 (447)
Q Consensus 159 ~~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~~~~~~~~---------------~~i~VVgIPkTIDND 213 (447)
.++++++.+++.++|.+|-|||--.+..|..++-.....+ -.+++|.||-|--.|
T Consensus 76 ~v~~~~~~~~~~~~d~IIavGGGsv~D~aK~iA~~~~~~~~~~~~d~~~~~~~~~~~~p~i~IPTT~gtg 145 (386)
T 1rrm_A 76 VVKEGLGVFQNSGADYLIAIGGGSPQDTCKAIGIISNNPEFADVRSLEGLSPTNKPSVPILAIPTTAGTA 145 (386)
T ss_dssp HHHHHHHHHHHHTCSEEEEEESHHHHHHHHHHHHHHHCGGGTTSGGGSEECCCCSCCSCEEEEECSSSCC
T ss_pred HHHHHHHHHHhcCcCEEEEeCChHHHHHHHHHHHHHhCCCCCCHHHHhcccccCCCCCCEEEEeCCCCch
Confidence 4789999999999999999999888888888876542211 267899999987433
No 69
>2g0t_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.67A {Thermotoga maritima} SCOP: c.37.1.10
Probab=59.10 E-value=66 Score=31.99 Aligned_cols=180 Identities=16% Similarity=0.163 Sum_probs=96.8
Q ss_pred CCCceEEEEccCCCCccHHHHHHHHHHHHHHhcCCeEEEEEcccccccccCCCCeEECChhhhhchhc-cCCccccccCC
Q 042534 78 PKNTRAAIVTCGGLCPGLNTVIRELVVGLWELYGVRQILGIQAGYRGFYSTTRNPLVLNPKMVRGWHK-LGGTVLETSRG 156 (447)
Q Consensus 78 p~~~kiaIvtsGG~~PGlN~vIr~vv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~~~L~~~~v~~i~~-~GGt~LGssR~ 156 (447)
|+.+=+|+.+.||.-| ...+..+..+. ..|.+-|.|.+. ++.++ ++ +....+ .|-+++++..-
T Consensus 90 ~d~lvig~a~~gg~l~---~~~~~~I~~Al-~~G~nVvsglh~----~l~~~-------pe-l~~~A~~~Gv~i~dvr~~ 153 (350)
T 2g0t_A 90 AEVLIIGVSNPGGYLE---EQIATLVKKAL-SLGMDVISGLHF----KISQQ-------TE-FLKIAHENGTRIIDIRIP 153 (350)
T ss_dssp CCEEEECCCSCCHHHH---HHHHHHHHHHH-HTTCEEEECCCC------CCH-------HH-HHHHHHHHTCCEEESSSC
T ss_pred CCEEEEEecCCCCCCC---HHHHHHHHHHH-HcCCcEEeCChh----hhhCC-------HH-HHHHHHHCCCEEEEeCcC
Confidence 4444455555566644 35555555554 467643444332 23222 22 333343 45568877443
Q ss_pred cccHHHHHHHHHHcCCCEEEEecCCCc---HHHHHHHHHHHHHcCCcceEeeeccccc---ccccCcCcccChhhHHHHH
Q 042534 157 GFDLHQIVDAIQTNAFNQVYIIGGDGT---MRGAVEIFDEIQRRKINVGVVGIPKTVD---NDVGIIDRSFGFQTAVEMA 230 (447)
Q Consensus 157 ~~~~~~iv~~l~~~~Id~L~vIGGdgS---~~~A~~L~~~~~~~~~~i~VVgIPkTID---NDi~~tD~s~GFdTAv~~~ 230 (447)
+.++.-.....++.....+++.|=|-+ ...+..|.+.++++|++...++-.-|.. .|....-.++-++-+....
T Consensus 154 p~~l~v~~g~i~~i~~~ri~v~GTDt~vGKt~t~~~L~~~l~~~G~~v~~v~tgqtg~li~~~~gv~~D~~~~~~~ag~~ 233 (350)
T 2g0t_A 154 PLELDVLRGGIYRKKIKVVGVFGTDCVVGKRTTAVQLWERALEKGIKAGFLATGQTGILIGADAGYVIDAVPADFVSGVV 233 (350)
T ss_dssp CSSCCCCCSGGGGCCSEEEEEEESSSSSSHHHHHHHHHHHHHHTTCCEEEEECSHHHHHTTCSEECCGGGSBGGGHHHHH
T ss_pred CCcccccccceeeecceEEEEecCCCCccCccHHHHHHHHHHhcCCeEEEEccCceeeeeccCCCCCCCceecchhhHHH
Confidence 211111112233446667999887755 6677888899999999888877665533 3332221244455444444
Q ss_pred HHHHHHHHHhhhhcCCcEEEEEecCC--ccchHHHHHhhccC-CccEEec
Q 042534 231 QQAISAAHVEAESAVNGIGLVKLMGR--STGHIALHATLSSR-DVDCCLI 277 (447)
Q Consensus 231 ~~ai~~i~~~A~S~~~~v~iVevMGR--~sG~lAl~aaLA~~-~ad~ilI 277 (447)
...+.++. ....-+.+||-.|- +..+.....+|..| .+|.+++
T Consensus 234 e~~i~~~~----~~~~D~ivVEGqGgl~~P~~~~v~~~ll~g~~p~~vIl 279 (350)
T 2g0t_A 234 EKAVLKLE----KTGKEIVFVEGQGALRHPAYGQVTLGLLYGSNPDVVFL 279 (350)
T ss_dssp HHHHHHHH----HTTCSEEEEECCSCTTCTTTHHHHHHHHHHHCCSEEEE
T ss_pred HhhHHHhh----hcCCCEEEEccCeeccccCchHHHHHHHcCCCCCEEEE
Confidence 44444333 22346999999884 44555545555443 5887777
No 70
>3bfj_A 1,3-propanediol oxidoreductase; opportunistic pathogens, decamer, structural genomics,struct proteomics in europe, spine; 2.70A {Klebsiella pneumoniae}
Probab=56.80 E-value=12 Score=37.45 Aligned_cols=54 Identities=9% Similarity=0.109 Sum_probs=42.3
Q ss_pred cHHHHHHHHHHcCCCEEEEecCCCcHHHHHHHHHHHHHc-------------CCcceEeeecccccc
Q 042534 159 DLHQIVDAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQRR-------------KINVGVVGIPKTVDN 212 (447)
Q Consensus 159 ~~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~~~~~~~-------------~~~i~VVgIPkTIDN 212 (447)
.++++++.+++.++|.++-|||--.+..|..++-..... .-.+++|.||-|--.
T Consensus 80 ~v~~~~~~~~~~~~d~IIavGGGsv~D~aK~iA~~~~~~~~~~d~~~~~~~~~~~~p~i~IPTT~gt 146 (387)
T 3bfj_A 80 NVRDGLAVFRREQCDIIVTVGGGSPHDCGKGIGIAATHEGDLYQYAGIETLTNPLPPIVAVNTTAGT 146 (387)
T ss_dssp HHHHHHHHHHHTTCCEEEEEESHHHHHHHHHHHHHHHSSSCSGGGCBSSCCCSCCCCEEEEECSTTC
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcchhhHHHHHHHHHhCCCCHHHHhcccccCCCCCCEEEEeCCCCc
Confidence 478999999999999999999988888888877542210 025789999998733
No 71
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*
Probab=56.20 E-value=68 Score=30.12 Aligned_cols=125 Identities=13% Similarity=0.068 Sum_probs=67.7
Q ss_pred CceEEEEccCCCCccHHHHHHHHHHHHHHhcCCeEEEEEcccccccccCCCCeEECChhhhhchhccCCccccccCCc-c
Q 042534 80 NTRAAIVTCGGLCPGLNTVIRELVVGLWELYGVRQILGIQAGYRGFYSTTRNPLVLNPKMVRGWHKLGGTVLETSRGG-F 158 (447)
Q Consensus 80 ~~kiaIvtsGG~~PGlN~vIr~vv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~~~L~~~~v~~i~~~GGt~LGssR~~-~ 158 (447)
..+||++...-.-|-...++.++-+.+. .+|+. +.- ..+... .
T Consensus 60 ~~~Ig~i~~~~~~~~~~~~~~gi~~~a~-~~g~~-~~~----------------------------------~~~~~~~~ 103 (332)
T 2hsg_A 60 TTTVGVIIPDISNIFYAELARGIEDIAT-MYKYN-IIL----------------------------------SNSDQNQD 103 (332)
T ss_dssp CCEEEEEEC--CCSHHHHHHHHHHHHHH-HHTCE-EEE----------------------------------EECCSHHH
T ss_pred CCEEEEEeCCCCCcHHHHHHHHHHHHHH-HcCCE-EEE----------------------------------EeCCCChH
Confidence 4579999876667888888999888774 44542 210 001111 1
Q ss_pred cHHHHHHHHHHcCCCEEEEecCCCcHHHHHHHHHHHHHcCCcceEeeecccccccccCcCcccChhhHHHHHHHHHHHHH
Q 042534 159 DLHQIVDAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGIPKTVDNDVGIIDRSFGFQTAVEMAQQAISAAH 238 (447)
Q Consensus 159 ~~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVgIPkTIDNDi~~tD~s~GFdTAv~~~~~ai~~i~ 238 (447)
...+.++.|...++|++++.+.+.+.. ..+.+.+ .+++||.+-..+++. .-.++++|-. ..+..+.+.+.
T Consensus 104 ~~~~~~~~l~~~~vdgiI~~~~~~~~~----~~~~l~~--~~iPvV~~~~~~~~~---~~~~V~~D~~-~~~~~a~~~L~ 173 (332)
T 2hsg_A 104 KELHLLNNMLGKQVDGIIFMSGNVTEE----HVEELKK--SPVPVVLAASIESTN---QIPSVTIDYE-QAAFDAVQSLI 173 (332)
T ss_dssp HHHHHHHHTSCCSSCCEEECCSSCCHH----HHHHHTT--SSSCEEEESCCCSCT---TSCEEEECHH-HHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcEEEEecCCCCHH----HHHHHHh--CCCCEEEEccccCCC---CCCEEEEChH-HHHHHHHHHHH
Confidence 234567777788999999998776532 2233333 356777653333220 1134555532 12222333333
Q ss_pred HhhhhcCCcEEEEEe
Q 042534 239 VEAESAVNGIGLVKL 253 (447)
Q Consensus 239 ~~A~S~~~~v~iVev 253 (447)
. .. |++|.++--
T Consensus 174 ~--~G-~~~I~~i~~ 185 (332)
T 2hsg_A 174 D--SG-HKNIAFVSG 185 (332)
T ss_dssp T--TT-CSCEEEEES
T ss_pred H--CC-CCEEEEEeC
Confidence 2 24 678888853
No 72
>3rf7_A Iron-containing alcohol dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: NAD EPE; 2.12A {Shewanella denitrificans}
Probab=53.17 E-value=11 Score=37.84 Aligned_cols=53 Identities=19% Similarity=0.223 Sum_probs=41.5
Q ss_pred cHHHHHHHHHHcC---CCEEEEecCCCcHHHHHHHHHHHHHc-------------CCcceEeeeccccc
Q 042534 159 DLHQIVDAIQTNA---FNQVYIIGGDGTMRGAVEIFDEIQRR-------------KINVGVVGIPKTVD 211 (447)
Q Consensus 159 ~~~~iv~~l~~~~---Id~L~vIGGdgS~~~A~~L~~~~~~~-------------~~~i~VVgIPkTID 211 (447)
.++++++.+++.+ .|.++-|||--++..|..++-..... +-.+++|.||-|--
T Consensus 94 ~v~~~~~~~~~~~~~~~D~IIavGGGS~iD~AK~iA~~~~~~~~~~~~~~~~~~~~~~~P~i~IPTTag 162 (375)
T 3rf7_A 94 QVDELTAQVKAFNTKLPVSVVGLGGGSTMDLAKAVSLMLTNPGSSSEYQGWDLIKNPAVHHIGIPTVSG 162 (375)
T ss_dssp HHHHHHHHHHHHCSSCCSEEEEEESHHHHHHHHHHHHHTSSCSCGGGGCEESCCCSCCCCEEEEESSCS
T ss_pred HHHHHHHHHHHhCCCCCCEEEEeCCcHHHHHHHHHHHHHhCCCCHHHhhccccccCCCCCEEEEcCCCc
Confidence 4788999999998 99999999988898888887643211 11578999998753
No 73
>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A
Probab=52.95 E-value=1.4e+02 Score=27.30 Aligned_cols=173 Identities=12% Similarity=0.093 Sum_probs=90.4
Q ss_pred CceEEEEccCCCCccHHHHHHHHHHHHHHhcCCeEEEEEcccccccccCCCCeEECChhhhhchhccCCccccccCCccc
Q 042534 80 NTRAAIVTCGGLCPGLNTVIRELVVGLWELYGVRQILGIQAGYRGFYSTTRNPLVLNPKMVRGWHKLGGTVLETSRGGFD 159 (447)
Q Consensus 80 ~~kiaIvtsGG~~PGlN~vIr~vv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~~~L~~~~v~~i~~~GGt~LGssR~~~~ 159 (447)
..+||++...-.-|=...++.++-+.+. .+|+ ++.- + ++.....
T Consensus 2 ~~~Ig~i~~~~~~~~~~~~~~gi~~~a~-~~g~-~~~~---------------------------------~-~~~~~~~ 45 (306)
T 8abp_A 2 NLKLGFLVKQPEEPWFQTEWKFADKAGK-DLGF-EVIK---------------------------------I-AVPDGEK 45 (306)
T ss_dssp CEEEEEEESCTTSHHHHHHHHHHHHHHH-HHTE-EEEE---------------------------------E-ECCSHHH
T ss_pred CeEEEEEeCCCCchHHHHHHHHHHHHHH-HcCC-EEEE---------------------------------e-CCCCHHH
Confidence 4689999988778888889999888875 4453 2220 0 1111123
Q ss_pred HHHHHHHHHHcCCCEEEEecCCCcHHHHHHHHHHHHHcCCcceEeeecccccccccCc-------CcccChhh--HHHHH
Q 042534 160 LHQIVDAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGIPKTVDNDVGII-------DRSFGFQT--AVEMA 230 (447)
Q Consensus 160 ~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVgIPkTIDNDi~~t-------D~s~GFdT--Av~~~ 230 (447)
..+.++.+...++|++++.+-+.+.. ..+.+.+.+. +++||.+ |++.+.. ..+++.|- +...+
T Consensus 46 ~~~~i~~l~~~~vdgiii~~~~~~~~--~~~~~~~~~~--~iPvV~~----~~~~~~~~~~~~~~~~~V~~D~~~~g~~a 117 (306)
T 8abp_A 46 TLNAIDSLAASGAKGFVICTPDPKLG--SAIVAKARGY--DMKVIAV----DDQFVNAKGKPMDTVPLVMLAATKIGERQ 117 (306)
T ss_dssp HHHHHHHHHHTTCCEEEEECSCGGGH--HHHHHHHHHT--TCEEEEE----SSCCBCTTSCBCTTSCEEEECHHHHHHHH
T ss_pred HHHHHHHHHHcCCCEEEEeCCCchhh--HHHHHHHHHC--CCcEEEe----CCCCCCccccccccccEEecChhHHHHHH
Confidence 45678888889999999999876532 2222334444 5677754 4332211 12444442 23333
Q ss_pred HHHHH-HHHHhhhhcCCcEEEEEe--------cCCccchHHHHHhhccCCccEEecCCCCCCcchhhhHHHHHHHHHhh
Q 042534 231 QQAIS-AAHVEAESAVNGIGLVKL--------MGRSTGHIALHATLSSRDVDCCLIPEMEFYLEGKGGLVEFLDNRLKE 300 (447)
Q Consensus 231 ~~ai~-~i~~~A~S~~~~v~iVev--------MGR~sG~lAl~aaLA~~~ad~ilIPE~~f~le~~~~l~~~i~~r~~~ 300 (447)
++.+- .+...... ..++.++-. .-|..||..+....--....++.+.+..++.+ .-.+.+++.++.
T Consensus 118 ~~~l~~~~g~~~~~-~~~i~~~~~~~~~~~~~~~R~~Gf~~~l~~~g~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~ 192 (306)
T 8abp_A 118 GQELYKEMQKRGWD-VKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPTKSNDIP---GAFDAANSMLVQ 192 (306)
T ss_dssp HHHHHHHHHHHTCC-GGGEEEEEEECTTSHHHHHHHHHHHHHHHHHTCCGGGEEEEECSSSSHH---HHHHHHHHHHTT
T ss_pred HHHHHHHHHhcCCC-ccceEEEEecCCCChHHHHHHHHHHHHHHhcCCCCcEEEeeccCCCChH---HHHHHHHHHHHh
Confidence 33222 21211111 236777742 23556776654432111134444445555554 344555555554
No 74
>2lnd_A De novo designed protein, PFK fold; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=52.76 E-value=25 Score=27.89 Aligned_cols=83 Identities=20% Similarity=0.296 Sum_probs=61.5
Q ss_pred chhccCCccccccCCcccHHHHHHHHHHcCCCEEEEecCCCcHHHHHHHHHHHHHcCCcceEeeecccccccccCcCccc
Q 042534 142 GWHKLGGTVLETSRGGFDLHQIVDAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGIPKTVDNDVGIIDRSF 221 (447)
Q Consensus 142 ~i~~~GGt~LGssR~~~~~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVgIPkTIDNDi~~tD~s~ 221 (447)
.-|+-+|-.+.|.-+.+|+..|++.++..+--.++.+-|- |....+.+..|+++.|..-.|. |+ ||
T Consensus 22 akhnypgryirtatssqdirdiiksmkdngkplvvfvnga-sqndvnefqneakkegvsydvl---ks-------td--- 87 (112)
T 2lnd_A 22 AKHNYPGRYIRTATSSQDIRDIIKSMKDNGKPLVVFVNGA-SQNDVNEFQNEAKKEGVSYDVL---KS-------TD--- 87 (112)
T ss_dssp HHHHSCTTTEEEECSHHHHHHHHHHHTTCCSCEEEEECSC-CHHHHHHHHHHHHHHTCEEEEE---EC-------CC---
T ss_pred hhcCCCCceeeeccchhhHHHHHHHHHhcCCeEEEEecCc-ccccHHHHHHHHHhcCcchhhh---cc-------CC---
Confidence 3467788888888877899999999999998877777664 5777888999999888654443 22 22
Q ss_pred ChhhHHHHHHHHHHHHHHhhhh
Q 042534 222 GFQTAVEMAQQAISAAHVEAES 243 (447)
Q Consensus 222 GFdTAv~~~~~ai~~i~~~A~S 243 (447)
-+...+-++....+|-|
T Consensus 88 -----peeltqrvreflktags 104 (112)
T 2lnd_A 88 -----PEELTQRVREFLKTAGS 104 (112)
T ss_dssp -----HHHHHHHHHHHHHHTTS
T ss_pred -----HHHHHHHHHHHHHhccc
Confidence 35566667777667766
No 75
>3okf_A 3-dehydroquinate synthase; structural genomics, center for structural genomics of infec diseases, csgid, NAD, lyase; HET: NAD; 2.50A {Vibrio cholerae o1 biovar eltor}
Probab=52.41 E-value=6.5 Score=39.90 Aligned_cols=49 Identities=14% Similarity=0.147 Sum_probs=39.6
Q ss_pred cHHHHHHHHHHcCC---CEEEEecCCCcHHHHHHHHHHHHHcCCcceEeeecccc
Q 042534 159 DLHQIVDAIQTNAF---NQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGIPKTV 210 (447)
Q Consensus 159 ~~~~iv~~l~~~~I---d~L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVgIPkTI 210 (447)
.++++++.+.+.++ |.++.+||--.+..|..++-. ...++++|.||-|.
T Consensus 108 ~v~~~~~~l~~~~~~R~d~IIAvGGGsv~D~ak~~Aa~---~~rgip~I~IPTTl 159 (390)
T 3okf_A 108 TFNTVMSFLLEHNYSRDVVVIALGGGVIGDLVGFAAAC---YQRGVDFIQIPTTL 159 (390)
T ss_dssp HHHHHHHHHHHTTCCTTCEEEEEESHHHHHHHHHHHHH---BTTCCEEEEEECSH
T ss_pred HHHHHHHHHHhcCCCcCcEEEEECCcHHhhHHHHHHHH---hcCCCCEEEeCCCC
Confidence 47899999999999 699999998888877766532 12368899999996
No 76
>3g85_A Transcriptional regulator (LACI family); transcription regulator, PSI-II, structural genomics structure initiative; 1.84A {Clostridium acetobutylicum atcc 824}
Probab=51.95 E-value=24 Score=32.42 Aligned_cols=125 Identities=11% Similarity=0.026 Sum_probs=66.7
Q ss_pred CCceEEEEcc-CCCCccHHHHHHHHHHHHHHhcCCeEEEEEcccccccccCCCCeEECChhhhhchhccCCccccccCCc
Q 042534 79 KNTRAAIVTC-GGLCPGLNTVIRELVVGLWELYGVRQILGIQAGYRGFYSTTRNPLVLNPKMVRGWHKLGGTVLETSRGG 157 (447)
Q Consensus 79 ~~~kiaIvts-GG~~PGlN~vIr~vv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~~~L~~~~v~~i~~~GGt~LGssR~~ 157 (447)
+..+||+++. .-.-|-...++.++-+.+. .+|+.-++...+ .+ .
T Consensus 10 ~~~~Igvi~~~~~~~~~~~~~~~gi~~~a~-~~g~~~~~~~~~-------~~-------~-------------------- 54 (289)
T 3g85_A 10 SKPTIALYWSSDISVNIISRFLRGLQSKLA-KQNYNYNVVICP-------YK-------T-------------------- 54 (289)
T ss_dssp -CCEEEEEEETTSCGGGHHHHHHHHHHHHH-HTTTCSEEEEEE-------EC-------T--------------------
T ss_pred CCceEEEEeccccchHHHHHHHHHHHHHHH-HcCCeEEEEecC-------CC-------c--------------------
Confidence 3467999986 5667888899999988874 455421111000 00 0
Q ss_pred ccHHHHHHHHHHcCCCEEEEecCCCcHHHHHHHHHHHHHcCCcceEeeecccccccccCcCcccChhhHHHHHHHHHHHH
Q 042534 158 FDLHQIVDAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGIPKTVDNDVGIIDRSFGFQTAVEMAQQAISAA 237 (447)
Q Consensus 158 ~~~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVgIPkTIDNDi~~tD~s~GFdTAv~~~~~ai~~i 237 (447)
.+..++++.+...++|++++.+-+.+. ..+.+ ....+++||.+ |++.+.. .++++|-. ..+..+.+.+
T Consensus 55 ~~~~~~~~~l~~~~vdgiIi~~~~~~~---~~~~~---~~~~~iPvV~~----~~~~~~~-~~V~~D~~-~~~~~a~~~L 122 (289)
T 3g85_A 55 DCLHLEKGISKENSFDAAIIANISNYD---LEYLN---KASLTLPIILF----NRLSNKY-SSVNVDNY-KMGEKASLLF 122 (289)
T ss_dssp TCGGGCGGGSTTTCCSEEEESSCCHHH---HHHHH---HCCCSSCEEEE----SCCCSSS-EEEEECHH-HHHHHHHHHH
T ss_pred hhHHHHHHHHhccCCCEEEEecCCccc---HHHHH---hccCCCCEEEE----CCCCCCC-CEEEeCHH-HHHHHHHHHH
Confidence 011233445667799999999876443 22222 22346778755 4444332 24555431 2222333333
Q ss_pred HHhhhhcCCcEEEEEe
Q 042534 238 HVEAESAVNGIGLVKL 253 (447)
Q Consensus 238 ~~~A~S~~~~v~iVev 253 (447)
.. .. |+++.++--
T Consensus 123 ~~--~G-~~~i~~i~~ 135 (289)
T 3g85_A 123 AK--KR-YKSAAAILT 135 (289)
T ss_dssp HH--TT-CCBCEEEEC
T ss_pred HH--cC-CCEEEEEeC
Confidence 32 24 678888753
No 77
>2gru_A 2-deoxy-scyllo-inosose synthase; aminoglycoside, 2-deoxystreptamine, dehydroquinate synthase, lyase; HET: NAD EXO CAK; 2.15A {Bacillus circulans} PDB: 2d2x_A*
Probab=51.75 E-value=7.1 Score=38.97 Aligned_cols=61 Identities=11% Similarity=0.146 Sum_probs=43.9
Q ss_pred cHHHHHHHHHHcCC---CEEEEecCCCcHHHHHHHHHHHHHcCCcceEeeecccccccccCcCcccChhh
Q 042534 159 DLHQIVDAIQTNAF---NQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGIPKTVDNDVGIIDRSFGFQT 225 (447)
Q Consensus 159 ~~~~iv~~l~~~~I---d~L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVgIPkTIDNDi~~tD~s~GFdT 225 (447)
.++++++.+.+.++ |.++-+||--.+..|..++-.. . .++++|.||-|. ++.+|-+.|--|
T Consensus 79 ~v~~~~~~~~~~~~~r~d~iIalGGGsv~D~ak~~Aa~~-~--rgip~i~IPTTl---la~tdS~v~~kt 142 (368)
T 2gru_A 79 TVTNLQERAIALGANRRTAIVAVGGGLTGNVAGVAAGMM-F--RGIALIHVPTTF---LAASDSVLSIKQ 142 (368)
T ss_dssp HHHHHHHHHHHTTCCTTEEEEEEESHHHHHHHHHHHHHB-T--TCCEEEEEECSH---HHHHTTTSSCEE
T ss_pred HHHHHHHHHHhcCCCCCcEEEEECChHHHHHHHHHHHHh-c--CCCCEEEECCch---HhhcCCCcCCeE
Confidence 36788999999995 9999999977777777665422 2 258899999996 444444444443
No 78
>3l8m_A Probable thiamine pyrophosphokinase; thiamin diphosphate biosynthetic process, ATP binding, structural genomics, PSI-2; 2.40A {Staphylococcus saprophyticus}
Probab=51.66 E-value=31 Score=31.69 Aligned_cols=70 Identities=11% Similarity=0.094 Sum_probs=51.0
Q ss_pred eEEEEEcccccccccCC--C-----CeEECChhhhhchhccCCccccccCCc--ccHHHHHHHHHHcCCCEEEEecCCCc
Q 042534 113 RQILGIQAGYRGFYSTT--R-----NPLVLNPKMVRGWHKLGGTVLETSRGG--FDLHQIVDAIQTNAFNQVYIIGGDGT 183 (447)
Q Consensus 113 ~~V~Gi~~G~~GL~~~~--~-----~~~~L~~~~v~~i~~~GGt~LGssR~~--~~~~~iv~~l~~~~Id~L~vIGGdgS 183 (447)
.-++|+-.|..=|++.. . ++-.++++..+.+...| .++-....+ -|.+++++.+.+++.+-++++|+-|.
T Consensus 23 ~~~i~~DgGa~~l~~~g~~Pd~ivGD~DSi~~~~~~~~~~~~-~i~~~p~eKD~TD~e~Al~~a~~~~~~~I~i~Ga~Gg 101 (212)
T 3l8m_A 23 EHWIGIDRGTLILLESGITPQFAVGDFDSISDSERNFIQQQI-EINPYNSEKDDTDLALGIDQAVKRGYRNIDVYGATGG 101 (212)
T ss_dssp SEEEEETHHHHHHHHTTCCCSEEESCCCCSCHHHHHHHHHHT-BCCCCC---CBCHHHHHHHHHHHTTCCEEEEESCSSS
T ss_pred CEEEEECHHHHHHHHCCCCccEEEeCcccCCHHHHHHHhcCC-cEEEECCcCCCCHHHHHHHHHHHCCCCEEEEEcCCCC
Confidence 46899999988776633 1 13336777777777776 666544332 47999999999999999999999997
No 79
>1vlj_A NADH-dependent butanol dehydrogenase; TM0820, structural G JCSG, protein structure initiative, PSI, joint center for S genomics; HET: NAP; 1.78A {Thermotoga maritima} SCOP: e.22.1.2
Probab=51.39 E-value=12 Score=37.88 Aligned_cols=53 Identities=11% Similarity=0.191 Sum_probs=41.6
Q ss_pred cHHHHHHHHHHcCCCEEEEecCCCcHHHHHHHHHHHHH-------------cCCcceEeeeccccc
Q 042534 159 DLHQIVDAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQR-------------RKINVGVVGIPKTVD 211 (447)
Q Consensus 159 ~~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~~~~~~-------------~~~~i~VVgIPkTID 211 (447)
.++++++.+++.++|.+|-|||--.+..|..++-.... ....+++|.||-|--
T Consensus 89 ~v~~~~~~~~~~~~D~IIavGGGsviD~AK~iA~~~~~~~~~~d~~~~~~~~~~~~p~i~IPTTag 154 (407)
T 1vlj_A 89 KVHEAVEVAKKEKVEAVLGVGGGSVVDSAKAVAAGALYEGDIWDAFIGKYQIEKALPIFDVLTISA 154 (407)
T ss_dssp HHHHHHHHHHHTTCSEEEEEESHHHHHHHHHHHHHTTCSSCGGGGGGTSCCCCCCCCEEEEECSCS
T ss_pred HHHHHHHHHHhcCCCEEEEeCChhHHHHHHHHHHHHhCCCCHHHHhcccccCCCCCCEEEEeCCCC
Confidence 47889999999999999999998888888888764210 013678999998853
No 80
>1tjy_A Sugar transport protein; protein-ligand complex, signaling protein; HET: PAV; 1.30A {Salmonella typhimurium} SCOP: c.93.1.1 PDB: 1tm2_A 3t95_A* 3ejw_A*
Probab=51.11 E-value=1.6e+02 Score=27.47 Aligned_cols=130 Identities=8% Similarity=0.021 Sum_probs=69.2
Q ss_pred CceEEEEccCCCCccHHHHHHHHHHHHHHhcCCeEEEEEcccccccccCCCCeEECChhhhhchhccCCccccccCCc-c
Q 042534 80 NTRAAIVTCGGLCPGLNTVIRELVVGLWELYGVRQILGIQAGYRGFYSTTRNPLVLNPKMVRGWHKLGGTVLETSRGG-F 158 (447)
Q Consensus 80 ~~kiaIvtsGG~~PGlN~vIr~vv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~~~L~~~~v~~i~~~GGt~LGssR~~-~ 158 (447)
..+||++...-..|=.+.++.++.+.+. .+|+ ++. + ...+... .
T Consensus 3 ~~~Igvi~~~~~~~~~~~~~~g~~~~~~-~~g~-~~~---------~------------------------~~~~~~d~~ 47 (316)
T 1tjy_A 3 AERIAFIPKLVGVGFFTSGGNGAQEAGK-ALGI-DVT---------Y------------------------DGPTEPSVS 47 (316)
T ss_dssp CCEEEEECSSSSSHHHHHHHHHHHHHHH-HHTC-EEE---------E------------------------CCCSSCCHH
T ss_pred CCEEEEEeCCCCChHHHHHHHHHHHHHH-HhCC-EEE---------E------------------------ECCCCCCHH
Confidence 3579999876667778888888877764 3443 111 1 0111111 1
Q ss_pred cHHHHHHHHHHcCCCEEEEecCCCcH-HHHHHHHHHHHHcCCcceEeeecccccccccCcCccc-ChhhHHHHHHHHHHH
Q 042534 159 DLHQIVDAIQTNAFNQVYIIGGDGTM-RGAVEIFDEIQRRKINVGVVGIPKTVDNDVGIIDRSF-GFQTAVEMAQQAISA 236 (447)
Q Consensus 159 ~~~~iv~~l~~~~Id~L~vIGGdgS~-~~A~~L~~~~~~~~~~i~VVgIPkTIDNDi~~tD~s~-GFdTAv~~~~~ai~~ 236 (447)
...+.++.|...++|+|++.+-|.+. ..+ + +.+.+. +|+||.+-..++++ ..+.++ ++|-. +....+.+.
T Consensus 48 ~q~~~i~~li~~~vdgiii~~~~~~~~~~~--~-~~a~~~--gipvV~~d~~~~~~--~~~~~v~~~D~~-~~g~~~~~~ 119 (316)
T 1tjy_A 48 GQVQLVNNFVNQGYDAIIVSAVSPDGLCPA--L-KRAMQR--GVKILTWDSDTKPE--CRSYYINQGTPK-QLGSMLVEM 119 (316)
T ss_dssp HHHHHHHHHHHTTCSEEEECCSSSSTTHHH--H-HHHHHT--TCEEEEESSCCCGG--GCSEEEESCCHH-HHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCHHHHHHH--H-HHHHHC--cCEEEEecCCCCCC--CceEEEecCCHH-HHHHHHHHH
Confidence 23467788888999999998877652 222 2 333333 57788763333221 123345 66532 222222333
Q ss_pred HHHhhhhcCCcEEEEE
Q 042534 237 AHVEAESAVNGIGLVK 252 (447)
Q Consensus 237 i~~~A~S~~~~v~iVe 252 (447)
+......-|++|.++.
T Consensus 120 L~~~~~~g~~~i~~i~ 135 (316)
T 1tjy_A 120 AAHQVDKEKAKVAFFY 135 (316)
T ss_dssp HHHHHCSSSEEEEEEE
T ss_pred HHHHcCCCCCEEEEEE
Confidence 3221111256787775
No 81
>3bbl_A Regulatory protein of LACI family; protein structure initiative II, PSI-II, NYSGXRC, transcript regulator, periplasmic binding protein; 2.35A {Chloroflexus aggregans}
Probab=50.83 E-value=1.5e+02 Score=27.03 Aligned_cols=124 Identities=6% Similarity=-0.021 Sum_probs=69.1
Q ss_pred CceEEEEccC-C---CCccHHHHHHHHHHHHHHhcCCeEEEEEcccccccccCCCCeEECChhhhhchhccCCccccccC
Q 042534 80 NTRAAIVTCG-G---LCPGLNTVIRELVVGLWELYGVRQILGIQAGYRGFYSTTRNPLVLNPKMVRGWHKLGGTVLETSR 155 (447)
Q Consensus 80 ~~kiaIvtsG-G---~~PGlN~vIr~vv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~~~L~~~~v~~i~~~GGt~LGssR 155 (447)
..+||++... - ..|-...++.++-+.+. .+|+ ++.-+ ..+ .
T Consensus 4 s~~Ig~i~~~~~~~~~~~~~~~~~~gi~~~a~-~~g~-~~~~~--------~~~-------------------------~ 48 (287)
T 3bbl_A 4 SFMIGYSWTQTEPGQVNHILDQFLSSMVREAG-AVNY-FVLPF--------PFS-------------------------E 48 (287)
T ss_dssp CCEEEECCCCCCTTCSCCTHHHHHHHHHHHHH-HTTC-EEEEC--------CCC-------------------------S
T ss_pred eeEEEEEecccccccCChhHHHHHHHHHHHHH-HcCC-EEEEE--------eCC-------------------------C
Confidence 4579999865 4 67888889999988874 4554 22100 000 0
Q ss_pred CcccHHHHHHHHHHcCCCEEEEecCCCcHHHHHHHHHHHHHcCCcceEeeecccccccccCcCcccChh--hHHHHHHHH
Q 042534 156 GGFDLHQIVDAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGIPKTVDNDVGIIDRSFGFQ--TAVEMAQQA 233 (447)
Q Consensus 156 ~~~~~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVgIPkTIDNDi~~tD~s~GFd--TAv~~~~~a 233 (447)
......+.++.+...++|++++.+.+.+... .+.+.+. +++||.+=..++++ . -.++++| .+...+++.
T Consensus 49 ~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~----~~~l~~~--~iPvV~~~~~~~~~--~-~~~V~~D~~~~g~~a~~~ 119 (287)
T 3bbl_A 49 DRSQIDIYRDLIRSGNVDGFVLSSINYNDPR----VQFLLKQ--KFPFVAFGRSNPDW--D-FAWVDIDGTAGTRQAVEY 119 (287)
T ss_dssp STTCCHHHHHHHHTTCCSEEEECSCCTTCHH----HHHHHHT--TCCEEEESCCSTTC--C-CCEEEECHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHcCCCCEEEEeecCCCcHH----HHHHHhc--CCCEEEECCcCCCC--C-CCEEEeccHHHHHHHHHH
Confidence 0112346778888999999999987754322 2333333 56677653333221 1 1245554 333344333
Q ss_pred HHHHHHhhhhcCCcEEEEEe
Q 042534 234 ISAAHVEAESAVNGIGLVKL 253 (447)
Q Consensus 234 i~~i~~~A~S~~~~v~iVev 253 (447)
+-+ .. +++|.++--
T Consensus 120 L~~-----~G-~~~I~~i~~ 133 (287)
T 3bbl_A 120 LIG-----RG-HRRIAILAW 133 (287)
T ss_dssp HHH-----HT-CCCEEEEEC
T ss_pred HHH-----CC-CCeEEEEeC
Confidence 322 24 678888753
No 82
>3miz_A Putative transcriptional regulator protein, LACI family; LACL family, protein structure initiative II (PSI II), NYSGXRC, structural genomics; 1.91A {Rhizobium etli}
Probab=50.62 E-value=36 Score=31.51 Aligned_cols=135 Identities=14% Similarity=0.011 Sum_probs=75.8
Q ss_pred CceEEEEccCCCCccHH-HHHHHHHHHHHHhcCCeEEEEEcccccccccCCCCeEECChhhhhchhccCCccccccCCcc
Q 042534 80 NTRAAIVTCGGLCPGLN-TVIRELVVGLWELYGVRQILGIQAGYRGFYSTTRNPLVLNPKMVRGWHKLGGTVLETSRGGF 158 (447)
Q Consensus 80 ~~kiaIvtsGG~~PGlN-~vIr~vv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~~~L~~~~v~~i~~~GGt~LGssR~~~ 158 (447)
..+||+++..-.-|-.. .++.++-+.+. .+|+. +.-+. +.....
T Consensus 13 s~~Igvi~~~~~~~~~~~~~~~gi~~~a~-~~g~~-~~~~~---------------------------------~~~~~~ 57 (301)
T 3miz_A 13 SNTFGIITDYVSTTPYSVDIVRGIQDWAN-ANGKT-ILIAN---------------------------------TGGSSE 57 (301)
T ss_dssp CCEEEEEESSTTTCCSCHHHHHHHHHHHH-HTTCE-EEEEE---------------------------------CTTCHH
T ss_pred CCEEEEEeCCCcCcccHHHHHHHHHHHHH-HCCCE-EEEEe---------------------------------CCCChH
Confidence 45699998777667777 88999888874 45642 22100 001112
Q ss_pred cHHHHHHHHHHcCCCEEEEecCCCcHHHHHHHHHHHHHcCCcceEeeecccccccccCc--CcccChhhHHHHHHHHHHH
Q 042534 159 DLHQIVDAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGIPKTVDNDVGII--DRSFGFQTAVEMAQQAISA 236 (447)
Q Consensus 159 ~~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVgIPkTIDNDi~~t--D~s~GFdTAv~~~~~ai~~ 236 (447)
...+.++.|...++|++++.+-+.+. ..+.+.+ .+++||.+ |++.+.. -.++++|-. ..+..+.+.
T Consensus 58 ~~~~~~~~l~~~~vdGiIi~~~~~~~-----~~~~~~~--~~iPvV~~----~~~~~~~~~~~~V~~D~~-~~g~~a~~~ 125 (301)
T 3miz_A 58 REVEIWKMFQSHRIDGVLYVTMYRRI-----VDPESGD--VSIPTVMI----NCRPQTRELLPSIEPDDY-QGARDLTRY 125 (301)
T ss_dssp HHHHHHHHHHHTTCSEEEEEEEEEEE-----CCCCCTT--CCCCEEEE----EEECSSTTSSCEEEECHH-HHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCEEEEecCCccH-----HHHHHHh--CCCCEEEE----CCCCCCCCCCCEEeeChH-HHHHHHHHH
Confidence 24578888999999999999876543 1122222 35677755 4444332 234555431 222233333
Q ss_pred HHHhhhhcCCcEEEEEec-------CCccchHHHH
Q 042534 237 AHVEAESAVNGIGLVKLM-------GRSTGHIALH 264 (447)
Q Consensus 237 i~~~A~S~~~~v~iVevM-------GR~sG~lAl~ 264 (447)
+.. .. |++|.++--. -|..||..+.
T Consensus 126 L~~--~G-~~~I~~i~~~~~~~~~~~R~~Gf~~al 157 (301)
T 3miz_A 126 LLE--RG-HRRIGYIRLNPILLGAELRLDAFRRTT 157 (301)
T ss_dssp HHT--TT-CCSEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred HHH--cC-CCeEEEEecCccchhHHHHHHHHHHHH
Confidence 332 34 6788888532 2445666543
No 83
>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ...
Probab=50.14 E-value=1.7e+02 Score=27.50 Aligned_cols=122 Identities=7% Similarity=0.054 Sum_probs=69.7
Q ss_pred CceEEEEccCCCCccHHHHHHHHHHHHHHhcCCeEEEEEcccccccccCCCCeEECChhhhhchhccCCccccccCCc-c
Q 042534 80 NTRAAIVTCGGLCPGLNTVIRELVVGLWELYGVRQILGIQAGYRGFYSTTRNPLVLNPKMVRGWHKLGGTVLETSRGG-F 158 (447)
Q Consensus 80 ~~kiaIvtsGG~~PGlN~vIr~vv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~~~L~~~~v~~i~~~GGt~LGssR~~-~ 158 (447)
..+||+++..-.-|-...++.++-+.+. .+|+ ++.- ..+... .
T Consensus 58 ~~~Igvi~~~~~~~~~~~~~~gi~~~a~-~~g~-~~~~----------------------------------~~~~~~~~ 101 (340)
T 1qpz_A 58 TKSIGLLATSSEAAYFAEIIEAVEKNCF-QKGY-TLIL----------------------------------GNAWNNLE 101 (340)
T ss_dssp CSEEEEEESCSCSHHHHHHHHHHHHHHH-HTTC-EEEE----------------------------------EECTTCHH
T ss_pred CCEEEEEeCCCCChHHHHHHHHHHHHHH-HcCC-EEEE----------------------------------EeCCCCHH
Confidence 3579999876667778888888888774 4554 2210 011111 1
Q ss_pred cHHHHHHHHHHcCCCEEEEecCCCcHHHHHHHHHHHHHcCCcceEeeecccccccccCcC--cccChhh--HHHHHHHHH
Q 042534 159 DLHQIVDAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGIPKTVDNDVGIID--RSFGFQT--AVEMAQQAI 234 (447)
Q Consensus 159 ~~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVgIPkTIDNDi~~tD--~s~GFdT--Av~~~~~ai 234 (447)
...+.++.|...++|++++.+.+.+-.. .+.+.+ ..+++||.+ |++.+..+ .++++|- +...+++.
T Consensus 102 ~~~~~~~~l~~~~vdgiI~~~~~~~~~~----~~~l~~-~~~iPvV~~----~~~~~~~~~~~~V~~D~~~~~~~a~~~- 171 (340)
T 1qpz_A 102 KQRAYLSMMAQKRVDGLLVMCSEYPEPL----LAMLEE-YRHIPMVVM----DWGEAKADFTDAVIDNAFEGGYMAGRY- 171 (340)
T ss_dssp HHHHHHHHHHHTTCSEEEECCSCCCHHH----HHHHHT-TTTSCEEEE----EESSCCCSSSEEEECCHHHHHHHHHHH-
T ss_pred HHHHHHHHHHcCCCCEEEEeCCCCChHH----HHHHHh-hCCCCEEEE----ecccCCCCCCCEEEECHHHHHHHHHHH-
Confidence 2346788888999999999987765322 222222 135677755 44443222 2566653 33333333
Q ss_pred HHHHHhhhhcCCcEEEEE
Q 042534 235 SAAHVEAESAVNGIGLVK 252 (447)
Q Consensus 235 ~~i~~~A~S~~~~v~iVe 252 (447)
+.. .. |++|.++-
T Consensus 172 --L~~--~G-~~~I~~i~ 184 (340)
T 1qpz_A 172 --LIE--RG-HREIGVIP 184 (340)
T ss_dssp --HHH--HT-CCCEEEEC
T ss_pred --HHH--CC-CCEEEEEe
Confidence 322 24 67898884
No 84
>1ujn_A Dehydroquinate synthase; riken structu genomics/proteomics initiative, RSGI, structural genomics,; 1.80A {Thermus thermophilus} SCOP: e.22.1.1
Probab=49.48 E-value=8.4 Score=38.19 Aligned_cols=49 Identities=10% Similarity=0.160 Sum_probs=39.1
Q ss_pred cHHHHHHHHHHcCC---CEEEEecCCCcHHHHHHHHHHHHHcCCcceEeeecccc
Q 042534 159 DLHQIVDAIQTNAF---NQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGIPKTV 210 (447)
Q Consensus 159 ~~~~iv~~l~~~~I---d~L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVgIPkTI 210 (447)
..+++++.+++.++ |.++-|||--.+..|..++... ..++++|.||-|.
T Consensus 69 ~v~~~~~~~~~~~~~r~d~IIavGGGsv~D~ak~~A~~~---~rgip~i~IPTTl 120 (348)
T 1ujn_A 69 VYGKVLSWLAEKGLPRNATLLVVGGGTLTDLGGFVAATY---LRGVAYLAFPTTT 120 (348)
T ss_dssp HHHHHHHHHHHHTCCTTCEEEEEESHHHHHHHHHHHHHB---TTCCEEEEEECSH
T ss_pred HHHHHHHHHHHcCCCCCCEEEEECCcHHHHHHHHHHHHh---ccCCCEEEecCcH
Confidence 47889999999998 8999999988888777776422 2368899999884
No 85
>3c3k_A Alanine racemase; structural genomics, protein structure initiative, NEW YORK research center for structural genomics, nysgxrc; 1.99A {Actinobacillus succinogenes}
Probab=49.46 E-value=1.5e+02 Score=26.86 Aligned_cols=121 Identities=12% Similarity=0.049 Sum_probs=68.5
Q ss_pred CceEEEEccCCCCccHHHHHHHHHHHHHHhcCCeEEEEEcccccccccCCCCeEECChhhhhchhccCCccccccCCc-c
Q 042534 80 NTRAAIVTCGGLCPGLNTVIRELVVGLWELYGVRQILGIQAGYRGFYSTTRNPLVLNPKMVRGWHKLGGTVLETSRGG-F 158 (447)
Q Consensus 80 ~~kiaIvtsGG~~PGlN~vIr~vv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~~~L~~~~v~~i~~~GGt~LGssR~~-~ 158 (447)
..+||+++..-..|-...++.++-+.+. .+|+ ++.-+ .+... .
T Consensus 8 ~~~Igvi~~~~~~~~~~~~~~gi~~~~~-~~g~-~~~~~----------------------------------~~~~~~~ 51 (285)
T 3c3k_A 8 TGMLLVMVSNIANPFCAAVVKGIEKTAE-KNGY-RILLC----------------------------------NTESDLA 51 (285)
T ss_dssp CCEEEEEESCTTSHHHHHHHHHHHHHHH-HTTC-EEEEE----------------------------------ECTTCHH
T ss_pred CCEEEEEeCCCCCchHHHHHHHHHHHHH-HcCC-EEEEE----------------------------------eCCCCHH
Confidence 4579999976667778888888888774 4454 22100 01111 1
Q ss_pred cHHHHHHHHHHcCCCEEEEecCCCcHHHHHHHHHHHHHcCCcceEeeecccccccccCc-CcccChhh--HHHHHHHHHH
Q 042534 159 DLHQIVDAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGIPKTVDNDVGII-DRSFGFQT--AVEMAQQAIS 235 (447)
Q Consensus 159 ~~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVgIPkTIDNDi~~t-D~s~GFdT--Av~~~~~ai~ 235 (447)
...+.++.+...++|++++.+.+.+-. .+ +.+. . +++||.+ |++.+.. -.++++|- +...+++
T Consensus 52 ~~~~~~~~l~~~~vdgiI~~~~~~~~~---~~-~~l~-~--~iPvV~~----~~~~~~~~~~~V~~D~~~~g~~a~~--- 117 (285)
T 3c3k_A 52 RSRSCLTLLSGKMVDGVITMDALSELP---EL-QNII-G--AFPWVQC----AEYDPLSTVSSVSIDDVAASEYVVD--- 117 (285)
T ss_dssp HHHHHTHHHHTTCCSEEEECCCGGGHH---HH-HHHH-T--TSSEEEE----SSCCTTSSSCEEECCHHHHHHHHHH---
T ss_pred HHHHHHHHHHhCCCCEEEEeCCCCChH---HH-HHHh-c--CCCEEEE----ccccCCCCCCEEEEChHHHHHHHHH---
Confidence 234667888889999999998765422 12 3333 3 5677765 3333211 13455553 3333333
Q ss_pred HHHHhhhhcCCcEEEEEe
Q 042534 236 AAHVEAESAVNGIGLVKL 253 (447)
Q Consensus 236 ~i~~~A~S~~~~v~iVev 253 (447)
.+... . +++|.++--
T Consensus 118 ~L~~~--G-~~~I~~i~~ 132 (285)
T 3c3k_A 118 QLVKS--G-KKRIALINH 132 (285)
T ss_dssp HHHHT--T-CCCEEEEEC
T ss_pred HHHHc--C-CCeEEEEeC
Confidence 33321 3 678888753
No 86
>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix, transcrip; 1.90A {Lactococcus lactis}
Probab=48.22 E-value=1.8e+02 Score=27.22 Aligned_cols=122 Identities=8% Similarity=0.037 Sum_probs=68.5
Q ss_pred CceEEEEccCCCCccHHHHHHHHHHHHHHhcCCeEEEEEcccccccccCCCCeEECChhhhhchhccCCccccccCCc-c
Q 042534 80 NTRAAIVTCGGLCPGLNTVIRELVVGLWELYGVRQILGIQAGYRGFYSTTRNPLVLNPKMVRGWHKLGGTVLETSRGG-F 158 (447)
Q Consensus 80 ~~kiaIvtsGG~~PGlN~vIr~vv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~~~L~~~~v~~i~~~GGt~LGssR~~-~ 158 (447)
..+||++...-.-|-...++.++-..+. .+|+. +.- ..+... .
T Consensus 63 ~~~Ig~i~~~~~~~~~~~~~~gi~~~~~-~~g~~-~~~----------------------------------~~~~~~~~ 106 (332)
T 2o20_A 63 TTTVGVILPTITSTYFAAITRGVDDIAS-MYKYN-MIL----------------------------------ANSDNDVE 106 (332)
T ss_dssp CCEEEEEESCTTCHHHHHHHHHHHHHHH-HTTCE-EEE----------------------------------EECTTCHH
T ss_pred CCEEEEEeCCCCCcHHHHHHHHHHHHHH-HcCCE-EEE----------------------------------EECCCChH
Confidence 4579999976667777888888888774 45542 210 011111 1
Q ss_pred cHHHHHHHHHHcCCCEEEEecCCCcHHHHHHHHHHHHHcCCcceEeeecccccccccCcCcccChhh--HHHHHHHHHHH
Q 042534 159 DLHQIVDAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGIPKTVDNDVGIIDRSFGFQT--AVEMAQQAISA 236 (447)
Q Consensus 159 ~~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVgIPkTIDNDi~~tD~s~GFdT--Av~~~~~ai~~ 236 (447)
...+.++.|...++|++++.+.+.+-... +.+.+. +++||.+-...+++ . -.++++|- +...+++ .
T Consensus 107 ~~~~~~~~l~~~~vdgiI~~~~~~~~~~~----~~l~~~--~iPvV~~~~~~~~~--~-~~~V~~D~~~~~~~a~~---~ 174 (332)
T 2o20_A 107 KEEKVLETFLSKQVDGIVYMGSSLDEKIR----TSLKNS--RTPVVLVGTIDGDK--E-IPSVNIDYHLAAYQSTK---K 174 (332)
T ss_dssp HHHHHHHHHHHTTCSEEEECSSCCCHHHH----HHHHHH--CCCEEEESCCCTTS--C-SCEEECCHHHHHHHHHH---H
T ss_pred HHHHHHHHHHhCCCCEEEEeCCCCCHHHH----HHHHhC--CCCEEEEccccCCC--C-CCEEEeChHHHHHHHHH---H
Confidence 23467788888999999999876553222 233333 46677653333221 1 12455542 3333333 3
Q ss_pred HHHhhhhcCCcEEEEE
Q 042534 237 AHVEAESAVNGIGLVK 252 (447)
Q Consensus 237 i~~~A~S~~~~v~iVe 252 (447)
+.. .. |++|.++-
T Consensus 175 L~~--~G-~~~I~~i~ 187 (332)
T 2o20_A 175 LID--SG-NKKIAYIM 187 (332)
T ss_dssp HHH--TT-CSSEEEEC
T ss_pred HHH--CC-CCeEEEEe
Confidence 322 24 67888884
No 87
>3clh_A 3-dehydroquinate synthase; shikimate pathway, aromatic amino acid biosynthesis, DHQS, amino-acid biosynthesis, cytoplasm, lyase, NAD; HET: NAD; 2.40A {Helicobacter pylori}
Probab=47.82 E-value=12 Score=36.89 Aligned_cols=49 Identities=14% Similarity=0.142 Sum_probs=40.2
Q ss_pred cHHHHHHHHHHcCC---CEEEEecCCCcHHHHHHHHHHHHHcCCcceEeeecccc
Q 042534 159 DLHQIVDAIQTNAF---NQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGIPKTV 210 (447)
Q Consensus 159 ~~~~iv~~l~~~~I---d~L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVgIPkTI 210 (447)
..+++++.+++.++ |.++-|||--.+..|..++-.. . .++++|.||-|.
T Consensus 70 ~v~~~~~~~~~~~~~r~d~iIavGGGsv~D~ak~~A~~~-~--rgip~i~IPTTl 121 (343)
T 3clh_A 70 SLERILNNAFEMQLNRHSLMIALGGGVISDMVGFASSIY-F--RGIDFINIPTTL 121 (343)
T ss_dssp HHHHHHHHHHHTTCCTTCEEEEEESHHHHHHHHHHHHHB-T--TCCEEEEEECSH
T ss_pred HHHHHHHHHHhcCCCCCceEEEECChHHHHHHHHHHHHh-c--cCCCEEEeCCch
Confidence 47899999999999 9999999988888777666432 2 368899999995
No 88
>3hs3_A Ribose operon repressor; PSI-II, NYSGXRC, periplasmic binding protein, structural genomics, protein structure initiative; 1.60A {Lactobacillus acidophilus}
Probab=47.60 E-value=53 Score=30.03 Aligned_cols=119 Identities=9% Similarity=0.034 Sum_probs=70.5
Q ss_pred CCceEEEEccCCCCccHHHHHHHHHHHHHHhcCCeEEEEEcccccccccCCCCeEECChhhhhchhccCCccccccCCc-
Q 042534 79 KNTRAAIVTCGGLCPGLNTVIRELVVGLWELYGVRQILGIQAGYRGFYSTTRNPLVLNPKMVRGWHKLGGTVLETSRGG- 157 (447)
Q Consensus 79 ~~~kiaIvtsGG~~PGlN~vIr~vv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~~~L~~~~v~~i~~~GGt~LGssR~~- 157 (447)
+..+||+++..-.-|-...++.++-+.+. .+|+..+.-. .+...
T Consensus 9 ~~~~Igvi~~~~~~~~~~~~~~gi~~~a~-~~g~~~~~~~----------------------------------~~~~~~ 53 (277)
T 3hs3_A 9 KSKMIGIIIPDLNNRFYAQIIDGIQEVIQ-KEGYTALISF----------------------------------STNSDV 53 (277)
T ss_dssp CCCEEEEEESCTTSHHHHHHHHHHHHHHH-HTTCEEEEEE----------------------------------CSSCCH
T ss_pred CCCEEEEEeCCCCChhHHHHHHHHHHHHH-HCCCCEEEEE----------------------------------eCCCCh
Confidence 34679999988778888889999988874 4564202110 11111
Q ss_pred ccHHHHHHHHHHcCCCEEEEecCCCcHHHHHHHHHHHHHcCCcceEeeeccccccc-ccCcCcccChhhHHHHHHHHHHH
Q 042534 158 FDLHQIVDAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGIPKTVDND-VGIIDRSFGFQTAVEMAQQAISA 236 (447)
Q Consensus 158 ~~~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVgIPkTIDND-i~~tD~s~GFdTAv~~~~~ai~~ 236 (447)
....+.++.|...++|++++.+ .. + +.+. ..+++||.+ |++ ++..+.++++|-. +.+..+.+.
T Consensus 54 ~~~~~~~~~l~~~~vdgiIi~~--~~------~-~~~~--~~~iPvV~~----~~~~~~~~~~~V~~D~~-~~g~~a~~~ 117 (277)
T 3hs3_A 54 KKYQNAIINFENNNVDGIITSA--FT------I-PPNF--HLNTPLVMY----DSANINDDIVRIVSNNT-KGGKESIKL 117 (277)
T ss_dssp HHHHHHHHHHHHTTCSEEEEEC--CC------C-CTTC--CCSSCEEEE----SCCCCCSSSEEEEECHH-HHHHHHHHT
T ss_pred HHHHHHHHHHHhCCCCEEEEcc--hH------H-HHHH--hCCCCEEEE----cccccCCCCEEEEEChH-HHHHHHHHH
Confidence 2245678889999999999998 11 1 1121 235777754 555 4432226666642 223334444
Q ss_pred HHHhhhhcCCcEEEEE
Q 042534 237 AHVEAESAVNGIGLVK 252 (447)
Q Consensus 237 i~~~A~S~~~~v~iVe 252 (447)
+. .. |++|.++-
T Consensus 118 L~---~G-~~~I~~i~ 129 (277)
T 3hs3_A 118 LS---KK-IEKVLIQH 129 (277)
T ss_dssp SC---TT-CCEEEEEE
T ss_pred HH---hC-CCEEEEEe
Confidence 43 34 67888874
No 89
>1xah_A Sadhqs, 3-dehydroquinate synthase; shikimate pathway, aromatic amino acid biosynthesis, open form, form B, domain movement, cyclase; HET: NAD; 2.20A {Staphylococcus aureus} PDB: 1xag_A* 1xai_A* 1xaj_A* 1xal_A*
Probab=47.60 E-value=11 Score=37.21 Aligned_cols=49 Identities=16% Similarity=0.253 Sum_probs=40.3
Q ss_pred cHHHHHHHHHHcCC---CEEEEecCCCcHHHHHHHHHHHHHcCCcceEeeecccc
Q 042534 159 DLHQIVDAIQTNAF---NQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGIPKTV 210 (447)
Q Consensus 159 ~~~~iv~~l~~~~I---d~L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVgIPkTI 210 (447)
..+++++.+++.++ |.++-|||--.+..|..++-.. . .++++|.||-|.
T Consensus 75 ~v~~~~~~~~~~~~~r~d~iIavGGGsv~D~ak~vA~~~-~--rgip~i~IPTT~ 126 (354)
T 1xah_A 75 QYQETLEYILSHHVTRNTAIIAVGGGATGDFAGFVAATL-L--RGVHFIQVPTTI 126 (354)
T ss_dssp HHHHHHHHHHTTCCCTTCEEEEEESHHHHHHHHHHHHHB-T--TCCEEEEEECST
T ss_pred HHHHHHHHHHHcCCCCCceEEEECChHHHHHHHHHHHHh-c--cCCCEEEECCcc
Confidence 47889999999999 9999999988888887776432 2 368899999996
No 90
>1o2d_A Alcohol dehydrogenase, iron-containing; TM0920, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE NAP TRS; 1.30A {Thermotoga maritima} SCOP: e.22.1.2 PDB: 1vhd_A*
Probab=47.24 E-value=12 Score=37.39 Aligned_cols=54 Identities=24% Similarity=0.312 Sum_probs=41.9
Q ss_pred cHHHHHHHHHHcCCCEEEEecCCCcHHHHHHHHHHHHH-------------cCCcceEeeecccccc
Q 042534 159 DLHQIVDAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQR-------------RKINVGVVGIPKTVDN 212 (447)
Q Consensus 159 ~~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~~~~~~-------------~~~~i~VVgIPkTIDN 212 (447)
.++++++.+++.+.|.++-|||--.+..|..++-.... ....+++|.||-|--.
T Consensus 86 ~v~~~~~~~~~~~~d~IIavGGGsv~D~AK~iA~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTTagt 152 (371)
T 1o2d_A 86 NVMKAVERYRNDSFDFVVGLGGGSPMDFAKAVAVLLKEKDLSVEDLYDREKVKHWLPVVEIPTTAGT 152 (371)
T ss_dssp HHHHHHHHHTTSCCSEEEEEESHHHHHHHHHHHHHTTSTTCCSGGGGCGGGCCCCCCEEEEECSSCC
T ss_pred HHHHHHHHHHhcCCCEEEEeCChHHHHHHHHHHHHHhCCCCCHHHHhcccCCCCCCeEEEEeCCCch
Confidence 46888999999999999999998888888887764331 0035789999999433
No 91
>3eaf_A ABC transporter, substrate binding protein; PSI2, NYSGXRC, substrate binding P structural genomics, protein structure initiative; 2.00A {Aeropyrum pernix}
Probab=46.25 E-value=95 Score=29.83 Aligned_cols=110 Identities=11% Similarity=-0.026 Sum_probs=65.0
Q ss_pred CccHHHHHHHHHHHHHHhcCCeEEEEEcc-cccccccCCCCeEECChhhhhchhccCCccccccCC---cccHHHHHHH-
Q 042534 92 CPGLNTVIRELVVGLWELYGVRQILGIQA-GYRGFYSTTRNPLVLNPKMVRGWHKLGGTVLETSRG---GFDLHQIVDA- 166 (447)
Q Consensus 92 ~PGlN~vIr~vv~~~~~~~~~~~V~Gi~~-G~~GL~~~~~~~~~L~~~~v~~i~~~GGt~LGssR~---~~~~~~iv~~- 166 (447)
+|--+...+.+++.+.+.+|+++|.-+.. ... +... +.....+.+...|+.+...... ..|....+..
T Consensus 121 ~~~~~~~~~~~~~~l~~~~g~~~iaii~~~~~~--~g~~-----~~~~~~~~l~~~G~~v~~~~~~~~~~~d~~~~~~~~ 193 (391)
T 3eaf_A 121 APDYSTQACSGLAFLASEFGQGKLALAYDSKVA--YSRS-----PIGAIKKAAPSLGLQVVGDYDLPLRATEADAERIAR 193 (391)
T ss_dssp SCCHHHHHHHHHHHHHHHHCSEEEEEEECTTCH--HHHT-----THHHHHHHTGGGTEEEEEEEECCTTCCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhcCCCEEEEEEecCCh--hHHH-----HHHHHHHHHHHcCCceeeeeccCCCCcCHHHHHHHH
Confidence 44456667777777765458766655533 111 0000 1111223344556666554332 2467888888
Q ss_pred -HHHcCCCEEEEecCCCcHHHHHHHHHHHHHcCCcceEeeeccccc
Q 042534 167 -IQTNAFNQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGIPKTVD 211 (447)
Q Consensus 167 -l~~~~Id~L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVgIPkTID 211 (447)
|++.+.|++|+.+ ++ ..+..+.+.+++.|+++++++..-+.+
T Consensus 194 ~l~~~~~dav~~~~-~~--~~~~~~~~~~~~~g~~~~~~~~~~~~~ 236 (391)
T 3eaf_A 194 EMLAADPDYVWCGN-TI--SSCSLLGRAMAKVGLDAFLLTNVWGFD 236 (391)
T ss_dssp HHHTTCCSEEEECS-CH--HHHHHHHHHHHHHTCCCEEEECGGGCS
T ss_pred HHHHcCCCEEEEec-Cc--HHHHHHHHHHHHCCCCceEEEeccCCC
Confidence 9999999887754 33 234556677788899998887654433
No 92
>1kq3_A Glycerol dehydrogenase; structural genomics, joint center FO structural genomics, JCSG, protein structure initiative, PS oxidoreductase; 1.50A {Thermotoga maritima} SCOP: e.22.1.2
Probab=45.25 E-value=10 Score=37.81 Aligned_cols=45 Identities=20% Similarity=0.312 Sum_probs=37.0
Q ss_pred cHHHHHHHHHHcCCCEEEEecCCCcHHHHHHHHHHHHHcCCcceEeeeccc
Q 042534 159 DLHQIVDAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGIPKT 209 (447)
Q Consensus 159 ~~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVgIPkT 209 (447)
.++++++.+++ +.|.++-|||--.+..|..++-. .++++|.||-|
T Consensus 83 ~v~~~~~~~~~-~~d~IIavGGGsv~D~aK~iA~~-----~~~p~i~IPTT 127 (376)
T 1kq3_A 83 EIERLSGLVEE-ETDVVVGIGGGKTLDTAKAVAYK-----LKKPVVIVPTI 127 (376)
T ss_dssp HHHHHHTTCCT-TCCEEEEEESHHHHHHHHHHHHH-----TTCCEEEEESS
T ss_pred HHHHHHHHHhc-CCCEEEEeCCcHHHHHHHHHHHh-----cCCCEEEecCc
Confidence 46777777778 99999999998888888888732 26789999998
No 93
>2rjo_A Twin-arginine translocation pathway signal protei; PSI-2, NYSGXRC, twin arginine translocation pathway signal P structural genomics; HET: GAL; 2.05A {Burkholderia phytofirmans}
Probab=44.98 E-value=2e+02 Score=26.83 Aligned_cols=132 Identities=10% Similarity=-0.043 Sum_probs=70.4
Q ss_pred CceEEEEccCCCCccHHHHHHHHHHHHHHhcCCeEEEEEcccccccccCCCCeEECChhhhhchhccCCccccccCCc-c
Q 042534 80 NTRAAIVTCGGLCPGLNTVIRELVVGLWELYGVRQILGIQAGYRGFYSTTRNPLVLNPKMVRGWHKLGGTVLETSRGG-F 158 (447)
Q Consensus 80 ~~kiaIvtsGG~~PGlN~vIr~vv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~~~L~~~~v~~i~~~GGt~LGssR~~-~ 158 (447)
..+||+++..-.-|-...++.++-+.+. .+|+. +. +-++... .
T Consensus 5 s~~Igvi~~~~~~~~~~~~~~gi~~~a~-~~g~~-l~----------------------------------~~~~~~~~~ 48 (332)
T 2rjo_A 5 QTTLACSFRSLTNPYYTAFNKGAQSFAK-SVGLP-YV----------------------------------PLTTEGSSE 48 (332)
T ss_dssp CCEEEEEESCTTSHHHHHHHHHHHHHHH-HHTCC-EE----------------------------------EEECTTCHH
T ss_pred ccEEEEEecCCCcHHHHHHHHHHHHHHH-HcCCE-EE----------------------------------EecCCCCHH
Confidence 4679999977777888888888888774 34431 11 0011111 1
Q ss_pred cHHHHHHHHHHcC--CCEEEEecCCCcHHHHHHHHHHHHHcCCcceEeeecccccccc----c-CcCcccChhhHHHHHH
Q 042534 159 DLHQIVDAIQTNA--FNQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGIPKTVDNDV----G-IIDRSFGFQTAVEMAQ 231 (447)
Q Consensus 159 ~~~~iv~~l~~~~--Id~L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVgIPkTIDNDi----~-~tD~s~GFdTAv~~~~ 231 (447)
...+.++.|...+ +|++++.+.+.+. ...+.+.+.+. +++||.+-..+++.- . ....++++|-. ..+.
T Consensus 49 ~~~~~i~~l~~~~~~vdgiIi~~~~~~~--~~~~~~~~~~~--~iPvV~~~~~~~~~~~~~~~~~~~~~V~~D~~-~~g~ 123 (332)
T 2rjo_A 49 KGIADIRALLQKTGGNLVLNVDPNDSAD--ARVIVEACSKA--GAYVTTIWNKPKDLHPWDYNPNYVAHLSYDGV-AYGE 123 (332)
T ss_dssp HHHHHHHHHHHHTTTCEEEEECCSSHHH--HHHHHHHHHHH--TCEEEEESCCCTTCCGGGGTTTEEEEEECCHH-HHHH
T ss_pred HHHHHHHHHHHCCCCCCEEEEeCCCHHH--HHHHHHHHHHC--CCeEEEECCCCCcccchhcccceeEEEccChH-HHHH
Confidence 2345677777888 9999998876432 11222333333 467776644433310 0 01234555532 1222
Q ss_pred HHHHHHHHhhhhcCCcEEEEEe
Q 042534 232 QAISAAHVEAESAVNGIGLVKL 253 (447)
Q Consensus 232 ~ai~~i~~~A~S~~~~v~iVev 253 (447)
.+.+.+...... +++|.++--
T Consensus 124 ~a~~~L~~~~~G-~~~I~~i~g 144 (332)
T 2rjo_A 124 ETATQLFKSMGG-KGGVVALGG 144 (332)
T ss_dssp HHHHHHHHHTTT-CEEEEEEEC
T ss_pred HHHHHHHHHcCC-CCeEEEEEC
Confidence 333333322234 678888753
No 94
>3cqj_A L-ribulose-5-phosphate 3-epimerase ULAE; TIM-barrel, isomerase, phosphate-binding motif; 2.04A {Escherichia coli} PDB: 3cqi_A 3cqh_A 3cqk_A
Probab=44.70 E-value=1.5e+02 Score=27.34 Aligned_cols=54 Identities=11% Similarity=0.114 Sum_probs=41.5
Q ss_pred CCcccHHHHHHHHHHcCCCEEEEecCCC---------cHHHHHHHHHHHHHcCCcceEeeecc
Q 042534 155 RGGFDLHQIVDAIQTNAFNQVYIIGGDG---------TMRGAVEIFDEIQRRKINVGVVGIPK 208 (447)
Q Consensus 155 R~~~~~~~iv~~l~~~~Id~L~vIGGdg---------S~~~A~~L~~~~~~~~~~i~VVgIPk 208 (447)
|...++++.++.+++.|++++=+-..+. +...+.++.+.+++.|+.+..++.|.
T Consensus 27 ~~~~~~~~~l~~~~~~G~~~iEl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~i~~~~~~~ 89 (295)
T 3cqj_A 27 PAGECWLERLQLAKTLGFDFVEMSVDETDERLSRLDWSREQRLALVNAIVETGVRVPSMCLSA 89 (295)
T ss_dssp CCCSCHHHHHHHHHHTTCSEEEEECCSSHHHHGGGGCCHHHHHHHHHHHHHHCCEEEEEEEGG
T ss_pred CCCCCHHHHHHHHHhcCCCEEEEecCCcccccCcccCCHHHHHHHHHHHHHcCCeEEEEecCc
Confidence 4446789999999999999987766543 34556778888889999887777664
No 95
>2h3h_A Sugar ABC transporter, periplasmic sugar-binding protein; glucose binding protein, periplasmic binding protein, GBP; HET: BGC; 1.70A {Thermotoga maritima} PDB: 2qvc_A* 3c6q_B*
Probab=44.65 E-value=1.9e+02 Score=26.60 Aligned_cols=83 Identities=14% Similarity=0.040 Sum_probs=44.3
Q ss_pred HHHHHHHHHHcCCCEEEEecCCCcHHHHHHHHHHHHHcCCcceEeeecccccccccC--cCcccChhh--HHHHHHHHHH
Q 042534 160 LHQIVDAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGIPKTVDNDVGI--IDRSFGFQT--AVEMAQQAIS 235 (447)
Q Consensus 160 ~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVgIPkTIDNDi~~--tD~s~GFdT--Av~~~~~ai~ 235 (447)
..+.++.|...++|++++.+.+.+.. ....+.+.+. +++||.+ |++.+. ...++++|- +...+++
T Consensus 46 ~~~~i~~l~~~~vdgiIi~~~~~~~~--~~~~~~~~~~--~iPvV~~----~~~~~~~~~~~~V~~d~~~~g~~a~~--- 114 (313)
T 2h3h_A 46 QLQMLESFIAEGVNGIAIAPSDPTAV--IPTIKKALEM--GIPVVTL----DTDSPDSGRYVYIGTDNYQAGYTAGL--- 114 (313)
T ss_dssp HHHHHHHHHHTTCSEEEECCSSTTTT--HHHHHHHHHT--TCCEEEE----SSCCTTSCCSCEEECCHHHHHHHHHH---
T ss_pred HHHHHHHHHHcCCCEEEEeCCChHHH--HHHHHHHHHC--CCeEEEe----CCCCCCcceeEEECcCHHHHHHHHHH---
Confidence 34567778889999999988765421 1122333333 5677765 444432 123455553 2333333
Q ss_pred HHHHhhhhcCCcEEEEEec
Q 042534 236 AAHVEAESAVNGIGLVKLM 254 (447)
Q Consensus 236 ~i~~~A~S~~~~v~iVevM 254 (447)
.+...... +++|.++--.
T Consensus 115 ~L~~~~~G-~~~I~~i~~~ 132 (313)
T 2h3h_A 115 IMKELLGG-KGKVVIGTGS 132 (313)
T ss_dssp HHHHHHTS-CSEEEEEESC
T ss_pred HHHHHcCC-CCEEEEEECC
Confidence 33322223 6788888543
No 96
>3ce9_A Glycerol dehydrogenase; NP_348253.1, 3-dehydroquinate syntha structural genomics, joint center for structural genomics; HET: MSE; 2.37A {Clostridium acetobutylicum atcc 824}
Probab=43.92 E-value=12 Score=36.90 Aligned_cols=51 Identities=14% Similarity=0.195 Sum_probs=39.8
Q ss_pred cHHHHHHHHHHcCCCEEEEecCCCcHHHHHHHHHHHHHcCCcceEeeeccccccccc
Q 042534 159 DLHQIVDAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGIPKTVDNDVG 215 (447)
Q Consensus 159 ~~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVgIPkTIDNDi~ 215 (447)
.++++ +.+++.+.|.++-|||--.+..|..++ .. + ++++|.||-|.-.|-.
T Consensus 77 ~v~~~-~~~~~~~~d~IIavGGGsv~D~aK~vA-~~--~--~~p~i~IPTT~~tgse 127 (354)
T 3ce9_A 77 EIGTN-AFKIPAEVDALIGIGGGKAIDAVKYMA-FL--R--KLPFISVPTSTSNDGF 127 (354)
T ss_dssp HHHHH-HTTSCTTCCEEEEEESHHHHHHHHHHH-HH--H--TCCEEEEESCCSSGGG
T ss_pred HHHHH-HHhhhcCCCEEEEECChHHHHHHHHHH-hh--c--CCCEEEecCcccCCCC
Confidence 35677 777788999999999988888888777 32 2 5789999999765443
No 97
>1sg6_A Pentafunctional AROM polypeptide; shikimate pathway, aromatic amino acid biosynthesis, DHQS, O form J, domain movement, cyclase, lyase; HET: NAD; 1.70A {Emericella nidulans} SCOP: e.22.1.1 PDB: 1nr5_A* 1nrx_A* 1nua_A 1nva_A* 1nvb_A* 1nvd_A* 1nve_A* 1nvf_A* 1dqs_A*
Probab=43.64 E-value=17 Score=36.57 Aligned_cols=49 Identities=20% Similarity=0.167 Sum_probs=39.5
Q ss_pred cHHHHHHHHHHcC--C---CEEEEecCCCcHHHHHHHHHHHHHcCCcceEeeecccc
Q 042534 159 DLHQIVDAIQTNA--F---NQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGIPKTV 210 (447)
Q Consensus 159 ~~~~iv~~l~~~~--I---d~L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVgIPkTI 210 (447)
..+++.+.+.+.+ + |.++-+||--.+..|..++-.. .+ ++++|.||-|.
T Consensus 88 ~v~~~~~~~~~~~~~~~r~d~iIalGGGsv~D~ak~~Aa~~-~r--gip~i~IPTTl 141 (393)
T 1sg6_A 88 TKADIEDWMLSQNPPCGRDTVVIALGGGVIGDLTGFVASTY-MR--GVRYVQVPTTL 141 (393)
T ss_dssp HHHHHHHHHHTSSSCCCTTCEEEEEESHHHHHHHHHHHHHG-GG--CCEEEEEECSH
T ss_pred HHHHHHHHHHHcCCCCCCCCEEEEECCcHHHHHHHHHHHHh-cC--CCCEEEECCch
Confidence 4789999999999 9 9999999987777777666432 33 57899999984
No 98
>3ipc_A ABC transporter, substrate binding protein (amino; venus flytrap domain, transport protein; 1.30A {Agrobacterium tumefaciens} PDB: 3ip5_A 3ip6_A 3ip7_A 3ip9_A 3ipa_A
Probab=43.44 E-value=42 Score=31.65 Aligned_cols=105 Identities=13% Similarity=0.060 Sum_probs=61.4
Q ss_pred CccHHHHHHHHHHHHHHhcCCeEEEEEcccccccccCCCCe-EECChhhhhchhccCCccccccC---CcccHHHHHHHH
Q 042534 92 CPGLNTVIRELVVGLWELYGVRQILGIQAGYRGFYSTTRNP-LVLNPKMVRGWHKLGGTVLETSR---GGFDLHQIVDAI 167 (447)
Q Consensus 92 ~PGlN~vIr~vv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~-~~L~~~~v~~i~~~GGt~LGssR---~~~~~~~iv~~l 167 (447)
+|--+...+.+++.+.+.+|+++|.-+... .. + ..+.....+.+...|+++..... +..+....++.+
T Consensus 118 ~~~~~~~~~~~~~~l~~~~g~~~iaii~~~------~~--~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~d~~~~~~~l 189 (356)
T 3ipc_A 118 CGRDDQQGGIAGKYLADHFKDAKVAIIHDK------TP--YGQGLADETKKAANAAGVTEVMYEGVNVGDKDFSALISKM 189 (356)
T ss_dssp SCCHHHHHHHHHHHHHHHCTTCCEEEEECS------SH--HHHHHHHHHHHHHHHTTCCCSEEEECCTTCCCCHHHHHHH
T ss_pred cCChHHHHHHHHHHHHHhcCCCEEEEEeCC------Ch--HHHHHHHHHHHHHHHcCCEEEEEEeeCCCCCCHHHHHHHH
Confidence 344455667777777666677666554321 00 0 00111122334456666554332 235678888899
Q ss_pred HHcCCCEEEEecCCCcHHHHHHHHHHHHHcCCcceEeeec
Q 042534 168 QTNAFNQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGIP 207 (447)
Q Consensus 168 ~~~~Id~L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVgIP 207 (447)
++.+.|++|+.+-+.. +..+.+.+++.|+++++++..
T Consensus 190 ~~~~~d~v~~~~~~~~---a~~~~~~~~~~g~~~~~~~~~ 226 (356)
T 3ipc_A 190 KEAGVSIIYWGGLHTE---AGLIIRQAADQGLKAKLVSGD 226 (356)
T ss_dssp HHTTCCEEEEESCHHH---HHHHHHHHHHHTCCCEEEECG
T ss_pred HhcCCCEEEEccCchH---HHHHHHHHHHCCCCCcEEEec
Confidence 9999999887664432 334556777889888877654
No 99
>1ta9_A Glycerol dehydrogenase; oxidoredu; 1.90A {Schizosaccharomyces pombe}
Probab=42.84 E-value=12 Score=38.64 Aligned_cols=46 Identities=22% Similarity=0.283 Sum_probs=36.7
Q ss_pred cHHHHHHHHHHcCCCEEEEecCCCcHHHHHHHHHHHHHcCCcceEeeecccc
Q 042534 159 DLHQIVDAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGIPKTV 210 (447)
Q Consensus 159 ~~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVgIPkTI 210 (447)
.++++++.+++ +.|.++-|||--.+..|..++-. .++++|.||-|-
T Consensus 134 ~v~~~~~~~~~-~~D~IIAvGGGSviD~AK~iA~~-----~giP~I~IPTTA 179 (450)
T 1ta9_A 134 ELDKLRKQCPD-DTQVIIGVGGGKTMDSAKYIAHS-----MNLPSIICPTTA 179 (450)
T ss_dssp HHHHHHTTSCT-TCCEEEEEESHHHHHHHHHHHHH-----TTCCEEEEESSC
T ss_pred HHHHHHHHHhh-CCCEEEEeCCcHHHHHHHHHHHh-----cCCCEEEEeCCC
Confidence 35666677777 99999999998888888888732 267899999993
No 100
>3brs_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; 2.00A {Clostridium phytofermentans}
Probab=42.54 E-value=1.6e+02 Score=26.51 Aligned_cols=128 Identities=9% Similarity=0.089 Sum_probs=68.6
Q ss_pred CCceEEEEccCCC--CccHHHHHHHHHHHHHHhcCCeEEEEEcccccccccCCCCeEECChhhhhchhccCCccccccCC
Q 042534 79 KNTRAAIVTCGGL--CPGLNTVIRELVVGLWELYGVRQILGIQAGYRGFYSTTRNPLVLNPKMVRGWHKLGGTVLETSRG 156 (447)
Q Consensus 79 ~~~kiaIvtsGG~--~PGlN~vIr~vv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~~~L~~~~v~~i~~~GGt~LGssR~ 156 (447)
+..+||++...-. .|-...++.++-+.+. .+|+ ++. + .+. .+..
T Consensus 4 ~~~~Ig~v~~~~~~~~~~~~~~~~gi~~~a~-~~g~-~~~---------~--------~~~---------------~~~~ 49 (289)
T 3brs_A 4 KQYYMICIPKVLDDSSDFWSVLVEGAQMAAK-EYEI-KLE---------F--------MAP---------------EKEE 49 (289)
T ss_dssp -CCEEEEECSCCCSSSHHHHHHHHHHHHHHH-HHTC-EEE---------E--------CCC---------------SSTT
T ss_pred CCcEEEEEeCCCCCCchHHHHHHHHHHHHHH-HcCC-EEE---------E--------ecC---------------CCCC
Confidence 3467999987655 7888888888888774 4443 111 0 000 0011
Q ss_pred c-ccHHHHHHHHHHcCCCEEEEecCCCcHHHHHHHHHHHHHcCCcceEeeecccccccccCc--CcccChhh--HHHHHH
Q 042534 157 G-FDLHQIVDAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGIPKTVDNDVGII--DRSFGFQT--AVEMAQ 231 (447)
Q Consensus 157 ~-~~~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVgIPkTIDNDi~~t--D~s~GFdT--Av~~~~ 231 (447)
. ....+.++.|.+.++|++++.+.+.+.. ....+.+.+ .+++||.+ |++.+.. ..++++|- +...++
T Consensus 50 ~~~~~~~~~~~l~~~~vdgii~~~~~~~~~--~~~~~~~~~--~~iPvV~~----~~~~~~~~~~~~V~~D~~~~g~~~~ 121 (289)
T 3brs_A 50 DYLVQNELIEEAIKRKPDVILLAAADYEKT--YDAAKEIKD--AGIKLIVI----DSGMKQDIADITVATDNIQAGIRIG 121 (289)
T ss_dssp CHHHHHHHHHHHHHTCCSEEEECCSCTTTT--HHHHTTTGG--GTCEEEEE----SSCCSSCCCSEEEECCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCEEEEeCCChHHh--HHHHHHHHH--CCCcEEEE----CCCCCCCcceEEEeeChHHHHHHHH
Confidence 1 1235677888889999999998775421 111222222 25777765 3333321 23455553 333333
Q ss_pred HHHHHHHHhhhhcCCcEEEEE
Q 042534 232 QAISAAHVEAESAVNGIGLVK 252 (447)
Q Consensus 232 ~ai~~i~~~A~S~~~~v~iVe 252 (447)
+ .+.... .-+++|.++-
T Consensus 122 ~---~L~~~~-G~~~~i~~i~ 138 (289)
T 3brs_A 122 A---VTKNLV-RKSGKIGVIS 138 (289)
T ss_dssp H---HHHHHT-SSSCEEEEEE
T ss_pred H---HHHHHc-CCCceEEEEE
Confidence 3 333211 1257888875
No 101
>3fst_A 5,10-methylenetetrahydrofolate reductase; TIM barrel, flavin, amino-acid biosynthesis, FAD, flavoprotein, methionine biosynthesis, NAD; HET: FAD MRY; 1.65A {Escherichia coli k-12} PDB: 3fsu_A* 1zp3_A* 1zpt_A* 1zrq_A* 1zp4_A* 2fmn_A* 2fmo_A* 1b5t_A*
Probab=41.97 E-value=27 Score=34.09 Aligned_cols=50 Identities=16% Similarity=0.252 Sum_probs=38.5
Q ss_pred ccHHHHHHHHHHcCCCEEEEecCCC------cHHHHHHHHHHHHHc-CCcceEeeec
Q 042534 158 FDLHQIVDAIQTNAFNQVYIIGGDG------TMRGAVEIFDEIQRR-KINVGVVGIP 207 (447)
Q Consensus 158 ~~~~~iv~~l~~~~Id~L~vIGGdg------S~~~A~~L~~~~~~~-~~~i~VVgIP 207 (447)
..++..+..+.+.||+.++++.||- .+..|..|.+.+++. ++.|.|.+-|
T Consensus 97 ~~l~~~L~~~~~~GI~nILaLrGDpp~~~~~~~~~A~dLv~~ir~~~~f~IgvA~yP 153 (304)
T 3fst_A 97 DELRTIARDYWNNGIRHIVALRGDLPPGSGKPEMYASDLVTLLKEVADFDISVAAYP 153 (304)
T ss_dssp HHHHHHHHHHHHTTCCEEEEECCCCC------CCCHHHHHHHHHHHCCCEEEEEECT
T ss_pred HHHHHHHHHHHHCCCCEEEEecCCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCC
Confidence 4678889999999999999999984 345577888877664 4667777766
No 102
>2fn9_A Ribose ABC transporter, periplasmic ribose-bindin; RBP, ribose binding protein, periplasmic binding protein, thermophilic proteins; 1.40A {Thermotoga maritima} PDB: 2fn8_A*
Probab=41.53 E-value=2e+02 Score=25.94 Aligned_cols=87 Identities=13% Similarity=0.041 Sum_probs=52.3
Q ss_pred ceEEEEccCCCCccHHHHHHHHHHHHHHhcCCeEEEEEcccccccccCCCCeEECChhhhhchhccCCccccccCCc-cc
Q 042534 81 TRAAIVTCGGLCPGLNTVIRELVVGLWELYGVRQILGIQAGYRGFYSTTRNPLVLNPKMVRGWHKLGGTVLETSRGG-FD 159 (447)
Q Consensus 81 ~kiaIvtsGG~~PGlN~vIr~vv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~~~L~~~~v~~i~~~GGt~LGssR~~-~~ 159 (447)
.+||++...-.-|-...++.++.+.+. .+|+ ++.- -.+... ..
T Consensus 3 ~~Ig~i~~~~~~~~~~~~~~gi~~~~~-~~g~-~~~~----------------------------------~~~~~~~~~ 46 (290)
T 2fn9_A 3 GKMAIVISTLNNPWFVVLAETAKQRAE-QLGY-EATI----------------------------------FDSQNDTAK 46 (290)
T ss_dssp CEEEEEESCSSSHHHHHHHHHHHHHHH-HTTC-EEEE----------------------------------EECTTCHHH
T ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHH-HcCC-EEEE----------------------------------eCCCCCHHH
Confidence 579999877667888888888888774 4553 2210 011111 12
Q ss_pred HHHHHHHHHHcCCCEEEEecCCCcHHHHHHHHHHHHHcCCcceEeeec
Q 042534 160 LHQIVDAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGIP 207 (447)
Q Consensus 160 ~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVgIP 207 (447)
..+.++.+...++|++++.+.+.+.. ....+++.+. +++||.+-
T Consensus 47 ~~~~~~~l~~~~vdgiI~~~~~~~~~--~~~~~~~~~~--~iPvV~~~ 90 (290)
T 2fn9_A 47 ESAHFDAIIAAGYDAIIFNPTDADGS--IANVKRAKEA--GIPVFCVD 90 (290)
T ss_dssp HHHHHHHHHHTTCSEEEECCSCTTTT--HHHHHHHHHT--TCCEEEES
T ss_pred HHHHHHHHHHcCCCEEEEecCChHHH--HHHHHHHHHC--CCeEEEEe
Confidence 34567788889999999998765421 1122333333 46677653
No 103
>3lkv_A Uncharacterized conserved domain protein; ATPase binding cassette, PSI, MCSG, structural genomics, Pro structure initiative; HET: PHE; 2.20A {Vibrio cholerae}
Probab=40.95 E-value=1.7e+02 Score=27.33 Aligned_cols=72 Identities=19% Similarity=0.154 Sum_probs=47.3
Q ss_pred CCCceEEEEccCCCCccHHHHHHHHHHHHHHhcCCeEEEEEcccccccccCCCCeEECChhhhhchhccCCccccccCCc
Q 042534 78 PKNTRAAIVTCGGLCPGLNTVIRELVVGLWELYGVRQILGIQAGYRGFYSTTRNPLVLNPKMVRGWHKLGGTVLETSRGG 157 (447)
Q Consensus 78 p~~~kiaIvtsGG~~PGlN~vIr~vv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~~~L~~~~v~~i~~~GGt~LGssR~~ 157 (447)
.+..||||++.- .=|.++++-.|+...|. ..|+ .++. -+++.. . ...+.
T Consensus 6 ~~~~~igi~q~~-~hp~ld~~~~G~~~~L~-~~G~-------------~~g~--nv~~~~------~--------~a~gd 54 (302)
T 3lkv_A 6 AKTAKVAVSQIV-EHPALDATRQGLLDGLK-AKGY-------------EEGK--NLEFDY------K--------TAQGN 54 (302)
T ss_dssp -CCEEEEEEESC-CCHHHHHHHHHHHHHHH-HTTC-------------CBTT--TEEEEE------E--------ECTTC
T ss_pred cCCceEEEEEee-cChhHHHHHHHHHHHHH-hhCc-------------ccCC--cEEEEE------E--------eCCCC
Confidence 357899999874 67999999999999885 4443 1221 122211 0 11111
Q ss_pred -ccHHHHHHHHHHcCCCEEEEecC
Q 042534 158 -FDLHQIVDAIQTNAFNQVYIIGG 180 (447)
Q Consensus 158 -~~~~~iv~~l~~~~Id~L~vIGG 180 (447)
.....+++.|...++|.++.||-
T Consensus 55 ~~~~~~~~~~l~~~~~DlIiai~t 78 (302)
T 3lkv_A 55 PAIAVQIARQFVGENPDVLVGIAT 78 (302)
T ss_dssp HHHHHHHHHHHHTTCCSEEEEESH
T ss_pred HHHHHHHHHHHHhcCCcEEEEcCC
Confidence 23678899999999999988863
No 104
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=39.92 E-value=1.1e+02 Score=28.03 Aligned_cols=123 Identities=11% Similarity=0.056 Sum_probs=69.5
Q ss_pred CCceEEEEccCC-----CCccHHHHHHHHHHHHHHhcCCeEEEEEcccccccccCCCCeEECChhhhhchhccCCccccc
Q 042534 79 KNTRAAIVTCGG-----LCPGLNTVIRELVVGLWELYGVRQILGIQAGYRGFYSTTRNPLVLNPKMVRGWHKLGGTVLET 153 (447)
Q Consensus 79 ~~~kiaIvtsGG-----~~PGlN~vIr~vv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~~~L~~~~v~~i~~~GGt~LGs 153 (447)
+..+||+++..- .-|-...+++++-+.+. .+|+ ++. + ..
T Consensus 6 ~s~~Igvi~~~~~~~~~~~~f~~~~~~gi~~~a~-~~g~-~~~---------~-------------------------~~ 49 (295)
T 3hcw_A 6 QTYKIGLVLKGSEEPIRLNPFYINVLLGISETCN-QHGY-GTQ---------T-------------------------TV 49 (295)
T ss_dssp CSCEEEEECSCCCHHHHSCHHHHHHHHHHHHHHH-TTTC-EEE---------E-------------------------CC
T ss_pred CCcEEEEEeecCCcccccChHHHHHHHHHHHHHH-HCCC-EEE---------E-------------------------Ec
Confidence 346799998542 35666777888877763 4454 221 0 01
Q ss_pred cCCc-ccHHHHHHHHHHcCCCEEEEecCCCcHHHHHHHHHHHHHcCCcceEeeecccccccccCc---CcccChh--hHH
Q 042534 154 SRGG-FDLHQIVDAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGIPKTVDNDVGII---DRSFGFQ--TAV 227 (447)
Q Consensus 154 sR~~-~~~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVgIPkTIDNDi~~t---D~s~GFd--TAv 227 (447)
+... ....++++.|...++|++++.+.+.+-. +.+.+.+. +++||.+ |++++.. -.++++| .+.
T Consensus 50 ~~~~~~~~~~~~~~l~~~~vdGiI~~~~~~~~~----~~~~l~~~--~iPvV~i----~~~~~~~~~~~~~V~~D~~~~~ 119 (295)
T 3hcw_A 50 SNNMNDLMDEVYKMIKQRMVDAFILLYSKENDP----IKQMLIDE--SMPFIVI----GKPTSDIDHQFTHIDNDNILAS 119 (295)
T ss_dssp CCSHHHHHHHHHHHHHTTCCSEEEESCCCTTCH----HHHHHHHT--TCCEEEE----SCCCSSGGGGSCEEEECHHHHH
T ss_pred CCCChHHHHHHHHHHHhCCcCEEEEcCcccChH----HHHHHHhC--CCCEEEE----CCCCccccCCceEEecCcHHHH
Confidence 1111 1245688889999999999998776532 22333344 4667744 5555433 2345544 344
Q ss_pred HHHHHHHHHHHHhhhhcCCcEEEEEe
Q 042534 228 EMAQQAISAAHVEAESAVNGIGLVKL 253 (447)
Q Consensus 228 ~~~~~ai~~i~~~A~S~~~~v~iVev 253 (447)
..+++.+-+ .. |++|.++--
T Consensus 120 ~~a~~~L~~-----~G-~~~I~~i~~ 139 (295)
T 3hcw_A 120 ENLTRHVIE-----QG-VDELIFITE 139 (295)
T ss_dssp HHHHHHHHH-----HC-CSEEEEEEE
T ss_pred HHHHHHHHH-----cC-CccEEEEcC
Confidence 444443322 24 678888853
No 105
>3apt_A Methylenetetrahydrofolate reductase; TIM barrel, oxidoreductase, flavin; HET: FAD; 1.85A {Thermus thermophilus} PDB: 3apy_A* 1v93_A*
Probab=39.85 E-value=31 Score=33.62 Aligned_cols=55 Identities=22% Similarity=0.395 Sum_probs=41.1
Q ss_pred ccCC--cccHHHHHHHHHHcCCCEEEEecCC-----C---c----HHHHHHHHHHHHHc-C--CcceEeeec
Q 042534 153 TSRG--GFDLHQIVDAIQTNAFNQVYIIGGD-----G---T----MRGAVEIFDEIQRR-K--INVGVVGIP 207 (447)
Q Consensus 153 ssR~--~~~~~~iv~~l~~~~Id~L~vIGGd-----g---S----~~~A~~L~~~~~~~-~--~~i~VVgIP 207 (447)
|||. ...++..+..+++.||+.++++.|| | . +..|..|.+.+++. | +.|.|.+-|
T Consensus 79 tc~~~~~~~l~~~L~~~~~~GI~niLaLrGD~p~~~g~~~~~~~~f~~a~~Lv~~ir~~~g~~f~igvA~yP 150 (310)
T 3apt_A 79 TVAGQSRKEVAEVLHRFVESGVENLLALRGDPPRGERVFRPHPEGFRYAAELVALIRERYGDRVSVGGAAYP 150 (310)
T ss_dssp ECTTSCHHHHHHHHHHHHHTTCCEEEEECCCCSTTCCSCCCCTTSCSSHHHHHHHHHHHHGGGSEEEEEECT
T ss_pred ecCCCCHHHHHHHHHHHHHCCCCEEEEEcCCCCCCCCCCCCCCCCCCCHHHHHHHHHHhCCCCeEEEEEeCC
Confidence 4444 2457888899999999999999999 3 2 44678888877766 4 667777766
No 106
>3h5t_A Transcriptional regulator, LACI family; DNA-dependent, protein structure initiative II(PSI II), NYSGXRC, 11232D), structural genomics; 2.53A {Corynebacterium glutamicum}
Probab=38.79 E-value=81 Score=30.13 Aligned_cols=77 Identities=17% Similarity=0.040 Sum_probs=43.5
Q ss_pred HHHHHHHHHHcCCCEEEEecCCCcHHHHHHHHHHHHHcCCcceEeeecccccccccCc-CcccChhh--HHHHHHHHHHH
Q 042534 160 LHQIVDAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGIPKTVDNDVGII-DRSFGFQT--AVEMAQQAISA 236 (447)
Q Consensus 160 ~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVgIPkTIDNDi~~t-D~s~GFdT--Av~~~~~ai~~ 236 (447)
..++++.|...++|++++.+-..+..... .+.+. +++||.+ |++.... -.++++|- +...+++ .
T Consensus 117 ~~~~~~~l~~~~vdGiIi~~~~~~~~~~~----~l~~~--~iPvV~i----~~~~~~~~~~~V~~D~~~~~~~a~~---~ 183 (366)
T 3h5t_A 117 HVSAQQLVNNAAVDGVVIYSVAKGDPHID----AIRAR--GLPAVIA----DQPAREEGMPFIAPNNRKAIAPAAQ---A 183 (366)
T ss_dssp HHHHHHHHHTCCCSCEEEESCCTTCHHHH----HHHHH--TCCEEEE----SSCCSCTTCCEEEECHHHHTHHHHH---H
T ss_pred HHHHHHHHHhCCCCEEEEecCCCChHHHH----HHHHC--CCCEEEE----CCccCCCCCCEEEeChHHHHHHHHH---H
Confidence 56788999999999999998754433333 33333 4667754 4433211 12344442 2333333 3
Q ss_pred HHHhhhhcCCcEEEEE
Q 042534 237 AHVEAESAVNGIGLVK 252 (447)
Q Consensus 237 i~~~A~S~~~~v~iVe 252 (447)
+.. .. |++|.+|-
T Consensus 184 L~~--~G-~r~I~~i~ 196 (366)
T 3h5t_A 184 LID--AG-HRKIGILS 196 (366)
T ss_dssp HHH--TT-CCSEEEEE
T ss_pred HHH--CC-CCcEEEEe
Confidence 322 24 77888886
No 107
>2qip_A Protein of unknown function VPA0982; APC85975, vibrio parahaemolyticus RIMD 2210633, STR genomics, PSI-2, protein structure initiative; 1.48A {Vibrio parahaemolyticus}
Probab=38.14 E-value=55 Score=28.41 Aligned_cols=51 Identities=31% Similarity=0.585 Sum_probs=36.5
Q ss_pred ccHHHHHHHHH-HcCCCEEEEecCCCcHHHHHHHHHHHHHc-CCcceEeeeccccc
Q 042534 158 FDLHQIVDAIQ-TNAFNQVYIIGGDGTMRGAVEIFDEIQRR-KINVGVVGIPKTVD 211 (447)
Q Consensus 158 ~~~~~iv~~l~-~~~Id~L~vIGGdgS~~~A~~L~~~~~~~-~~~i~VVgIPkTID 211 (447)
.|..-++|.++ ..++|.++++-||+=+.-+. +.++++ |.++-++|.|+...
T Consensus 94 ~Dv~laiD~~~~a~~~d~~vLvSgD~DF~plv---~~lr~~~G~~V~v~g~~~~~s 146 (165)
T 2qip_A 94 WDVGITLDAIEIAPDVDRVILVSGDGDFSLLV---ERIQQRYNKKVTVYGVPRLTS 146 (165)
T ss_dssp CHHHHHHHHHHHGGGCSEEEEECCCGGGHHHH---HHHHHHHCCEEEEEECGGGSC
T ss_pred ccHHHHHHHHHhhccCCEEEEEECChhHHHHH---HHHHHHcCcEEEEEeCCCcCh
Confidence 56555555542 35799999999999877654 455665 88898999887543
No 108
>3qbe_A 3-dehydroquinate synthase; shikimate pathway, mycobacte tuberculosis, nicotinamide adenine dinucleotide (NAD)-depen enzyme; 2.07A {Mycobacterium tuberculosis} PDB: 3qbd_A
Probab=37.73 E-value=25 Score=35.28 Aligned_cols=49 Identities=18% Similarity=0.205 Sum_probs=39.1
Q ss_pred cHHHHHHHHHHcCC---CEEEEecCCCcHHHHHHHHHHHHHcCCcceEeeecccc
Q 042534 159 DLHQIVDAIQTNAF---NQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGIPKTV 210 (447)
Q Consensus 159 ~~~~iv~~l~~~~I---d~L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVgIPkTI 210 (447)
.++++++.+.+.++ |.++.+||--.+..|..++... .+ ++++|.||-|.
T Consensus 88 ~v~~~~~~l~~~~~~r~d~IIavGGGsv~D~ak~~Aa~~-~r--gip~i~IPTTl 139 (368)
T 3qbe_A 88 VVGFIWEVLGRIGIGRKDALVSLGGGAATDVAGFAAATW-LR--GVSIVHLPTTL 139 (368)
T ss_dssp HHHHHHHHHHHHTCCTTCEEEEEESHHHHHHHHHHHHHG-GG--CCEEEEEECSH
T ss_pred HHHHHHHHHHHcCCCCCcEEEEECChHHHHHHHHHHHHh-cc--CCcEEEECCCC
Confidence 36888999998875 9999999988888887776432 23 57899999996
No 109
>2fqx_A Membrane lipoprotein TMPC; ABC transport system, ligand-binding protein, guanosine, TP0319, transport protein; HET: GMP; 1.70A {Treponema pallidum} PDB: 2fqw_A* 2fqy_A*
Probab=37.25 E-value=2.7e+02 Score=26.17 Aligned_cols=23 Identities=13% Similarity=0.120 Sum_probs=18.8
Q ss_pred cHHHHHHHHHHcCCCEEEEecCC
Q 042534 159 DLHQIVDAIQTNAFNQVYIIGGD 181 (447)
Q Consensus 159 ~~~~iv~~l~~~~Id~L~vIGGd 181 (447)
+.++.++.|.+.++|++|++|..
T Consensus 50 ~~~~~l~~l~~~~~dgIi~~~~~ 72 (318)
T 2fqx_A 50 EYVPSLSAFADENMGLVVACGSF 72 (318)
T ss_dssp GHHHHHHHHHHTTCSEEEEESTT
T ss_pred HHHHHHHHHHHcCCCEEEECChh
Confidence 45677888889999999999854
No 110
>3jr7_A Uncharacterized EGV family protein COG1307; structural genomics, PSI2, MCSG, protein struct initiative; HET: PG6; 2.00A {Ruminococcus gnavus}
Probab=37.22 E-value=66 Score=31.06 Aligned_cols=133 Identities=12% Similarity=0.086 Sum_probs=74.4
Q ss_pred ccCCCCceEEEEc-cCCCCccHHHHHHHHHHHHHHhcCCeEEEEEccccccc-ccCCCCeEECChhhhhchhccCCcccc
Q 042534 75 FFEPKNTRAAIVT-CGGLCPGLNTVIRELVVGLWELYGVRQILGIQAGYRGF-YSTTRNPLVLNPKMVRGWHKLGGTVLE 152 (447)
Q Consensus 75 ~f~p~~~kiaIvt-sGG~~PGlN~vIr~vv~~~~~~~~~~~V~Gi~~G~~GL-~~~~~~~~~L~~~~v~~i~~~GGt~LG 152 (447)
++++-.+|++||| |.-+-|- ...+.+++ .|+-+.-=+.|= +.+ -++++++.+-.....++.+..
T Consensus 14 ~~~~m~Mki~IvtDSt~dL~~----------e~~~~~~I-~vvPL~v~~~~~~y~D---~~di~~~efy~~~~~~~~~p~ 79 (298)
T 3jr7_A 14 WFGRKDMSYKVIVDSCGEFTP----------EMKADGGF-EHVALGIQIEDTQWTD---DDSLKQEELLLKIAESTSCAK 79 (298)
T ss_dssp ----CCCCEEEEEETTSCCCH----------HHHHHSSE-EEECCEEEETTEEEEC---STTSCHHHHHHHHHHCSSCCE
T ss_pred ccccCCCCEEEEEECCCCCCH----------HHHHhCCe-EEEEEEEEECCEEEec---CCCCCHHHHHHHHHhCCCCce
Confidence 3444225899999 6666552 22245775 343322111111 112 245888888777777777777
Q ss_pred ccCCcccHHHHHHHHHHcCCCEEEEec----CCCcHHHHHHHHHHHHHc--CCcceEeeecccccccccCcCcccChhhH
Q 042534 153 TSRGGFDLHQIVDAIQTNAFNQVYIIG----GDGTMRGAVEIFDEIQRR--KINVGVVGIPKTVDNDVGIIDRSFGFQTA 226 (447)
Q Consensus 153 ssR~~~~~~~iv~~l~~~~Id~L~vIG----GdgS~~~A~~L~~~~~~~--~~~i~VVgIPkTIDNDi~~tD~s~GFdTA 226 (447)
||. +...+..+.+++ +-+.+++|. =-||+..|...++.+.+. +.+|.|| |. . --|.|..=.
T Consensus 80 TSq--ps~~~~~~~f~~-~~~~Ii~i~iSs~LSGTy~sA~~Aa~~~~e~~~~~~I~Vi------DS--~--~~s~g~g~l 146 (298)
T 3jr7_A 80 TSC--PSPERYMESYHC-DAERIYVVTLSAELSGSYNSAVLGKNLYEEEYGEKQIHVF------NS--R--SASVGETLI 146 (298)
T ss_dssp EEC--CCHHHHHHHHCS-SCSEEEEEESCTTTCSHHHHHHHHHHHHHHHHCCCEEEEE------EC--S--SCTHHHHHH
T ss_pred eCC--CCHHHHHHHHHh-cCCeEEEEECCcchhHHHHHHHHHHHHHHhhCCCCeEEEE------CC--C--chhHHHHHH
Confidence 776 445666666665 567777773 578888888777766542 2455554 21 1 135555555
Q ss_pred HHHHHHHH
Q 042534 227 VEMAQQAI 234 (447)
Q Consensus 227 v~~~~~ai 234 (447)
+..|++.+
T Consensus 147 v~~Aa~l~ 154 (298)
T 3jr7_A 147 ALKVQQCE 154 (298)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555544
No 111
>3trh_A Phosphoribosylaminoimidazole carboxylase carboxyltransferase subunit; purines, pyrimidines, nucleosides, nucleotides, lyase; 2.20A {Coxiella burnetii}
Probab=36.26 E-value=73 Score=28.54 Aligned_cols=52 Identities=15% Similarity=0.267 Sum_probs=35.1
Q ss_pred ccccCCcccHHHHHHHHHHcCCCEEEEecC-CCcHHHHHHHHHHHHHcCCcceEeeeccc
Q 042534 151 LETSRGGFDLHQIVDAIQTNAFNQVYIIGG-DGTMRGAVEIFDEIQRRKINVGVVGIPKT 209 (447)
Q Consensus 151 LGssR~~~~~~~iv~~l~~~~Id~L~vIGG-dgS~~~A~~L~~~~~~~~~~i~VVgIPkT 209 (447)
.+--|....+.+++++.++.+++.+|++-| .+.+-+.. +- ....+|||||-.
T Consensus 41 ~SaHR~p~~~~~~~~~a~~~g~~ViIa~AG~aa~Lpgvv--A~-----~t~~PVIgVP~~ 93 (169)
T 3trh_A 41 LSAHRTPKETVEFVENADNRGCAVFIAAAGLAAHLAGTI--AA-----HTLKPVIGVPMA 93 (169)
T ss_dssp CCTTTSHHHHHHHHHHHHHTTEEEEEEEECSSCCHHHHH--HH-----TCSSCEEEEECC
T ss_pred EcccCCHHHHHHHHHHHHhCCCcEEEEECChhhhhHHHH--Hh-----cCCCCEEEeecC
Confidence 334466566788888999999997776644 44444432 22 246899999964
No 112
>3gyb_A Transcriptional regulators (LACI-family transcriptional regulatory protein); protein structure initiative II(PSI II), nysgxrc; 1.60A {Corynebacterium glutamicum}
Probab=35.70 E-value=2.4e+02 Score=25.20 Aligned_cols=132 Identities=13% Similarity=-0.035 Sum_probs=72.6
Q ss_pred CCceEEEEccCCCCccHHHHHHHHHHHHHHhcCCeEEEEEcccccccccCCCCeEECChhhhhchhccCCccccccCCcc
Q 042534 79 KNTRAAIVTCGGLCPGLNTVIRELVVGLWELYGVRQILGIQAGYRGFYSTTRNPLVLNPKMVRGWHKLGGTVLETSRGGF 158 (447)
Q Consensus 79 ~~~kiaIvtsGG~~PGlN~vIr~vv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~~~L~~~~v~~i~~~GGt~LGssR~~~ 158 (447)
+..+||++...-.-|=...++.++...+. .+|+ ++.-+. +. ...
T Consensus 4 ~~~~Igvi~~~~~~~~~~~~~~gi~~~a~-~~g~-~~~~~~---------------------------------~~-~~~ 47 (280)
T 3gyb_A 4 RTQLIAVLIDDYSNPWFIDLIQSLSDVLT-PKGY-RLSVID---------------------------------SL-TSQ 47 (280)
T ss_dssp CCCEEEEEESCTTSGGGHHHHHHHHHHHG-GGTC-EEEEEC---------------------------------SS-SSC
T ss_pred ccCEEEEEeCCCCChHHHHHHHHHHHHHH-HCCC-EEEEEe---------------------------------CC-Cch
Confidence 34679999988888889999999988874 4554 222110 01 111
Q ss_pred cHHHHHHHHHHcCCCEEEEecCCCcHHHHHHHHHHHHHcCCcceEeeecccccccc-cC-cCcccChhhHHHHHHHHHHH
Q 042534 159 DLHQIVDAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGIPKTVDNDV-GI-IDRSFGFQTAVEMAQQAISA 236 (447)
Q Consensus 159 ~~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVgIPkTIDNDi-~~-tD~s~GFdTAv~~~~~ai~~ 236 (447)
...+.++.|.+.++|+++ ++.+.+.. .+.+ .+++||.+ |++. .. ...++++|- .+.+..+.+.
T Consensus 48 ~~~~~~~~l~~~~vdgiI-~~~~~~~~---~~~~------~~iPvV~~----~~~~~~~~~~~~V~~D~-~~~g~~a~~~ 112 (280)
T 3gyb_A 48 AGTDPITSALSMRPDGII-IAQDIPDF---TVPD------SLPPFVIA----GTRITQASTHDSVANDD-FRGAEIATKH 112 (280)
T ss_dssp SSSCHHHHHHTTCCSEEE-EESCC-----------------CCCEEEE----SCCCSSSCSTTEEEECH-HHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCEEE-ecCCCChh---hHhh------cCCCEEEE----CCCCCCCCCCCEEEech-HHHHHHHHHH
Confidence 123567778889999999 88776622 2211 36778754 4444 11 123455543 1222223333
Q ss_pred HHHhhhhcCCcEEEEEecC-----CccchHHHH
Q 042534 237 AHVEAESAVNGIGLVKLMG-----RSTGHIALH 264 (447)
Q Consensus 237 i~~~A~S~~~~v~iVevMG-----R~sG~lAl~ 264 (447)
+.. .. |++|.++--.. |..||..+.
T Consensus 113 L~~--~G-~~~i~~i~~~~~~~~~R~~gf~~~l 142 (280)
T 3gyb_A 113 LID--LG-HTHIAHLRVGSGAGLRRFESFEATM 142 (280)
T ss_dssp HHH--TT-CCSEEEECCSSHHHHHHHHHHHHHH
T ss_pred HHH--CC-CCeEEEEeCCCchHHHHHHHHHHHH
Confidence 332 23 67888886443 556666543
No 113
>3uhf_A Glutamate racemase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta sandwich fold, isomerase; HET: DGL; 1.83A {Campylobacter jejuni} PDB: 3uho_A* 3uhp_A
Probab=35.27 E-value=1e+02 Score=29.36 Aligned_cols=102 Identities=13% Similarity=0.185 Sum_probs=53.9
Q ss_pred ccccccCCCCceEEEEccCCCCccHHHHHHHHHHHHHHhcCCeEEEEEcccccccccCCCCeEECChhhhhchhccCCcc
Q 042534 71 RKQIFFEPKNTRAAIVTCGGLCPGLNTVIRELVVGLWELYGVRQILGIQAGYRGFYSTTRNPLVLNPKMVRGWHKLGGTV 150 (447)
Q Consensus 71 r~~~~f~p~~~kiaIvtsGG~~PGlN~vIr~vv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~~~L~~~~v~~i~~~GGt~ 150 (447)
.+.+||++...+|||.=|| . |.-.|.+.+.+.+ ...+++-+-+= .-+.+. +-+|+.+..
T Consensus 15 ~~~~~~~~~~~~IgvfDSG--v-GGLtv~~~i~~~l----P~e~~iy~~D~--a~~PYG----~ks~e~i~~-------- 73 (274)
T 3uhf_A 15 TENLYFQSNAMKIGVFDSG--V-GGLSVLKSLYEAR----LFDEIIYYGDT--ARVPYG----VKDKDTIIK-------- 73 (274)
T ss_dssp --CCCCCCSCCEEEEEESS--S-TTHHHHHHHHHTT----CCSEEEEEECT--TTCCCT----TSCHHHHHH--------
T ss_pred cceeeccCCCCeEEEEECC--C-ChHHHHHHHHHHC----CCCCEEEEecC--CCCCCC----CCCHHHHHH--------
Confidence 5788999999999999987 2 3345777776543 33344322110 000000 011111111
Q ss_pred ccccCCcccHHHHHHHHHHcCCCEEEEecCCCcHHHHHHHHHHHHHcCCcceEeee
Q 042534 151 LETSRGGFDLHQIVDAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGI 206 (447)
Q Consensus 151 LGssR~~~~~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVgI 206 (447)
-..++++.|++.|++++++-. |.....| .++++++ ++++||||
T Consensus 74 --------~~~~~~~~L~~~g~d~IVIAC-NTa~~~a---l~~lr~~-~~iPvigi 116 (274)
T 3uhf_A 74 --------FCLEALDFFEQFQIDMLIIAC-NTASAYA---LDALRAK-AHFPVYGV 116 (274)
T ss_dssp --------HHHHHHHHHTTSCCSEEEECC-HHHHHHS---HHHHHHH-CSSCEECS
T ss_pred --------HHHHHHHHHHHCCCCEEEEeC-CChhHHH---HHHHHHh-cCCCEEcC
Confidence 145778899999999876643 3222221 1333322 57889986
No 114
>3nyi_A FAT acid-binding protein; stearic acid, DEGV family protein, structural genomics, PSI- protein structure initiative; HET: STE; 1.90A {Eubacterium ventriosum} SCOP: c.119.1.0
Probab=35.22 E-value=40 Score=32.60 Aligned_cols=129 Identities=12% Similarity=0.070 Sum_probs=73.6
Q ss_pred ceEEEEc-cCCCCccHHHHHHHHHHHHHHhcCCeEEEEEccccccc-c-cCCCCeEECChhhhhchhccC-CccccccCC
Q 042534 81 TRAAIVT-CGGLCPGLNTVIRELVVGLWELYGVRQILGIQAGYRGF-Y-STTRNPLVLNPKMVRGWHKLG-GTVLETSRG 156 (447)
Q Consensus 81 ~kiaIvt-sGG~~PGlN~vIr~vv~~~~~~~~~~~V~Gi~~G~~GL-~-~~~~~~~~L~~~~v~~i~~~G-Gt~LGssR~ 156 (447)
+|++||| |+-+-| ....+.|++ .|+-+.-=+.|= + .+. ++++++.+-.....+ +....||--
T Consensus 3 ~ki~IvtDSt~dl~----------~e~~~~~~I-~vvPl~v~~~~~~y~~D~---~di~~~efy~~~~~~~~~~p~TSqp 68 (297)
T 3nyi_A 3 AMYKIVSDSACDLS----------KEYLEKHDV-TIVPLSVSFDGETYYRDG---VDITRDECYQRMVDDPKLFPKTSLP 68 (297)
T ss_dssp -CCEEEEEGGGCCC----------HHHHHHHTE-EEECCEEESSSSCEEEBT---TTBCHHHHHHHHHHCTTCCCEEECC
T ss_pred CCEEEEEecCCCCC----------HHHHHhCCe-EEEEEEEEECCEEEecCC---CCCCHHHHHHHHHhCCCCCceecCC
Confidence 5799999 655555 122245665 343322111110 1 111 357888877777665 567777764
Q ss_pred c-ccHHHHHHHHHHcCCCEEEEec----CCCcHHHHHHHHHHHHH-c-CCcceEeeecccccccccCcCcccChhhHHHH
Q 042534 157 G-FDLHQIVDAIQTNAFNQVYIIG----GDGTMRGAVEIFDEIQR-R-KINVGVVGIPKTVDNDVGIIDRSFGFQTAVEM 229 (447)
Q Consensus 157 ~-~~~~~iv~~l~~~~Id~L~vIG----GdgS~~~A~~L~~~~~~-~-~~~i~VVgIPkTIDNDi~~tD~s~GFdTAv~~ 229 (447)
. .++.++.+.+.+.+ +.+++|. =-||+..|...++.+.+ . +.+|.|| |. . --|.|..=.+..
T Consensus 69 s~~~~~~~f~~l~~~g-~~ii~i~iSs~LSGTy~sA~~aa~~~~e~~~~~~I~Vi------DS--~--~~s~g~g~~v~~ 137 (297)
T 3nyi_A 69 SVESYADVFRSFVEQG-FPVVCFTITTLFSGSYNSAINAKSLVLEDYPDANICVI------DS--K--QNTVTQALLIDQ 137 (297)
T ss_dssp CHHHHHHHHHHHHTTT-CCEEEEESCTTTCSHHHHHHHHHHHHHHHCTTCCEEEE------EC--S--CCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCC-CeEEEEECCCcHhHHHHHHHHHHHHHHhhCCCCeEEEE------eC--C--chHHHHHHHHHH
Confidence 3 35777788887778 7677763 57889988888766633 2 3455554 21 1 135555555555
Q ss_pred HHHHH
Q 042534 230 AQQAI 234 (447)
Q Consensus 230 ~~~ai 234 (447)
|++.+
T Consensus 138 A~~l~ 142 (297)
T 3nyi_A 138 FVRML 142 (297)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55544
No 115
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=35.09 E-value=2.9e+02 Score=25.88 Aligned_cols=33 Identities=9% Similarity=-0.039 Sum_probs=25.7
Q ss_pred CCceEEEEccCCCC-ccHHHHHHHHHHHHHHhcCC
Q 042534 79 KNTRAAIVTCGGLC-PGLNTVIRELVVGLWELYGV 112 (447)
Q Consensus 79 ~~~kiaIvtsGG~~-PGlN~vIr~vv~~~~~~~~~ 112 (447)
+..+||+++.+-.. |=.+.++.++-+.+. .+|+
T Consensus 2 ~~~~Ig~i~p~~~~~~f~~~~~~g~~~~a~-~~g~ 35 (350)
T 3h75_A 2 SLTSVVFLNPGNSTETFWVSYSQFMQAAAR-DLGL 35 (350)
T ss_dssp -CCEEEEEECSCTTCHHHHHHHHHHHHHHH-HHTC
T ss_pred CCCEEEEECCCCCCChHHHHHHHHHHHHHH-HcCC
Confidence 34689999988777 888999999988875 4565
No 116
>4grd_A N5-CAIR mutase, phosphoribosylaminoimidazole carboxylase catalyti; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures; 1.85A {Burkholderia cenocepacia}
Probab=34.95 E-value=36 Score=30.62 Aligned_cols=52 Identities=15% Similarity=0.308 Sum_probs=37.9
Q ss_pred ccccCCcccHHHHHHHHHHcCCCEEEEe-cCCCcHHHHHHHHHHHHHcCCcceEeeeccc
Q 042534 151 LETSRGGFDLHQIVDAIQTNAFNQVYII-GGDGTMRGAVEIFDEIQRRKINVGVVGIPKT 209 (447)
Q Consensus 151 LGssR~~~~~~~iv~~l~~~~Id~L~vI-GGdgS~~~A~~L~~~~~~~~~~i~VVgIPkT 209 (447)
.+--|....+.+.++..++.+++.+|++ ||.+.+-+...=. ...+|||||-.
T Consensus 47 ~saHR~p~~l~~~~~~a~~~g~~ViIa~AG~aahLpgvvA~~-------t~~PVIgVPv~ 99 (173)
T 4grd_A 47 VSAHRMPDEMFDYAEKARERGLRAIIAGAGGAAHLPGMLAAK-------TTVPVLGVPVA 99 (173)
T ss_dssp CCTTTSHHHHHHHHHHHTTTTCSEEEEEEESSCCHHHHHHHH-------CCSCEEEEEEC
T ss_pred EccccCHHHHHHHHHHHHhcCCeEEEEeccccccchhhheec-------CCCCEEEEEcC
Confidence 4445665667888888888999987765 7777777754321 47899999975
No 117
>3ot5_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, center for structural genomics of infec diseases, csgid, alpha beta; HET: PGE; 2.20A {Listeria monocytogenes}
Probab=34.90 E-value=26 Score=34.94 Aligned_cols=126 Identities=13% Similarity=0.117 Sum_probs=54.6
Q ss_pred ccccccCCCC---ceEEEEccCCCCccHHHHHHHHHHHHHHhcC-CeEEEEEccccc-ccccCCCCeEECChhhhhchhc
Q 042534 71 RKQIFFEPKN---TRAAIVTCGGLCPGLNTVIRELVVGLWELYG-VRQILGIQAGYR-GFYSTTRNPLVLNPKMVRGWHK 145 (447)
Q Consensus 71 r~~~~f~p~~---~kiaIvtsGG~~PGlN~vIr~vv~~~~~~~~-~~~V~Gi~~G~~-GL~~~~~~~~~L~~~~v~~i~~ 145 (447)
.+.++|+.+. +||++|+ |-.|+.--. +.+++.+.+ .+ ..+++-+.-|-. -+.+.-.+...++++.--.+..
T Consensus 15 ~~~~~~~~~~m~~~kI~~v~--Gtr~~~~~~-a~li~~l~~-~~~~~~~~~~~tG~h~~m~~~~~~~~~i~~~~~l~v~~ 90 (403)
T 3ot5_A 15 TENLYFQSNAMAKIKVMSIF--GTRPEAIKM-APLVLALEK-EPETFESTVVITAQHREMLDQVLEIFDIKPDIDLDIMK 90 (403)
T ss_dssp -----------CCEEEEEEE--CSHHHHHHH-HHHHHHHHT-CTTTEEEEEEECC-----CHHHHHHTTCCCSEECCCCC
T ss_pred cchhhhhhhccccceEEEEE--ecChhHHHH-HHHHHHHHh-CCCCCcEEEEEecCcHHHHHHHHHhcCCCCCcccccCC
Confidence 4556676652 3788887 567776554 677777753 33 235443333311 0110000000011110001111
Q ss_pred cCCccccccCCcccHHHHHHHHHHcCCCEEEEecCCCc-HHHHHHHHHHHHHcCCcceEeeecc
Q 042534 146 LGGTVLETSRGGFDLHQIVDAIQTNAFNQVYIIGGDGT-MRGAVEIFDEIQRRKINVGVVGIPK 208 (447)
Q Consensus 146 ~GGt~LGssR~~~~~~~iv~~l~~~~Id~L~vIGGdgS-~~~A~~L~~~~~~~~~~i~VVgIPk 208 (447)
.+.+.... ...-+.++.+.|++.+-|.++++|+-.+ +.++. .+. + .+|+|+.+-.
T Consensus 91 ~~~~~~~~--~~~~~~~l~~~l~~~kPD~Vi~~gd~~~~l~~~l-aA~---~--~~IPv~h~~a 146 (403)
T 3ot5_A 91 KGQTLAEI--TSRVMNGINEVIAAENPDIVLVHGDTTTSFAAGL-ATF---Y--QQKMLGHVEA 146 (403)
T ss_dssp -CCCHHHH--HHHHHHHHHHHHHHHCCSEEEEETTCHHHHHHHH-HHH---H--TTCEEEEESC
T ss_pred CCCCHHHH--HHHHHHHHHHHHHHcCCCEEEEECCchhHHHHHH-HHH---H--hCCCEEEEEC
Confidence 12222210 0012577888899999999999987444 33332 222 2 4677876643
No 118
>1iv0_A Hypothetical protein; rnaseh-like, YQGF, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Thermus thermophilus} SCOP: c.55.3.8
Probab=34.81 E-value=28 Score=28.14 Aligned_cols=31 Identities=23% Similarity=0.348 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHcCCcceEeeeccccccccc
Q 042534 185 RGAVEIFDEIQRRKINVGVVGIPKTVDNDVG 215 (447)
Q Consensus 185 ~~A~~L~~~~~~~~~~i~VVgIPkTIDNDi~ 215 (447)
.....|.+.+++++...-|||.|+++|+...
T Consensus 38 ~~~~~l~~li~e~~v~~iVvGlP~~mdGt~~ 68 (98)
T 1iv0_A 38 EDVEALLDFVRREGLGKLVVGLPLRTDLKES 68 (98)
T ss_dssp HHHHHHHHHHHHHTCCEEEEECCCCCCSSSC
T ss_pred HHHHHHHHHHHHcCCCEEEEeeccCCCCCcC
Confidence 3445666666777777779999999998764
No 119
>2qu7_A Putative transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus saprophyticus subsp}
Probab=34.80 E-value=88 Score=28.47 Aligned_cols=119 Identities=9% Similarity=0.159 Sum_probs=67.0
Q ss_pred CceEEEEccCCCCccHHHHHHHHHHHHHHhcCCeEEEEEcccccccccCCCCeEECChhhhhchhccCCccccccCCc-c
Q 042534 80 NTRAAIVTCGGLCPGLNTVIRELVVGLWELYGVRQILGIQAGYRGFYSTTRNPLVLNPKMVRGWHKLGGTVLETSRGG-F 158 (447)
Q Consensus 80 ~~kiaIvtsGG~~PGlN~vIr~vv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~~~L~~~~v~~i~~~GGt~LGssR~~-~ 158 (447)
..+||+++.. ..|-...++.++-..+. .+|+ ++. +..+... .
T Consensus 8 ~~~Igvi~~~-~~~~~~~~~~gi~~~~~-~~g~-~~~----------------------------------~~~~~~~~~ 50 (288)
T 2qu7_A 8 SNIIAFIVPD-QNPFFTEVLTEISHECQ-KHHL-HVA----------------------------------VASSEENED 50 (288)
T ss_dssp EEEEEEEESS-CCHHHHHHHHHHHHHHG-GGTC-EEE----------------------------------EEECTTCHH
T ss_pred CCEEEEEECC-CCchHHHHHHHHHHHHH-HCCC-EEE----------------------------------EEeCCCCHH
Confidence 4579999987 77888888888887764 4443 111 0011111 1
Q ss_pred cHHHHHHHHHHcCCCEEEEecCCCcHHHHHHHHHHHHHcCCcceEeeecccccccccCcCcccChhh--HHHHHHHHHHH
Q 042534 159 DLHQIVDAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGIPKTVDNDVGIIDRSFGFQT--AVEMAQQAISA 236 (447)
Q Consensus 159 ~~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVgIPkTIDNDi~~tD~s~GFdT--Av~~~~~ai~~ 236 (447)
...+.++.+...++|++++.+.+.+... + +.+ .+++||.+-...+++ . -.++++|- +...+++ .
T Consensus 51 ~~~~~~~~l~~~~vdgiI~~~~~~~~~~---~-~~l----~~iPvV~~~~~~~~~--~-~~~V~~d~~~~g~~a~~---~ 116 (288)
T 2qu7_A 51 KQQDLIETFVSQNVSAIILVPVKSKFQM---K-REW----LKIPIMTLDRELEST--S-LPSITVDNEEAAYIATK---R 116 (288)
T ss_dssp HHHHHHHHHHHTTEEEEEECCSSSCCCC---C-GGG----GGSCEEEESCCCSSC--C-CCEEEECHHHHHHHHHH---H
T ss_pred HHHHHHHHHHHcCccEEEEecCCCChHH---H-HHh----cCCCEEEEecccCCC--C-CCEEEECcHHHHHHHHH---H
Confidence 2356778888899999999988765211 1 111 257777654433321 1 13455543 3333333 3
Q ss_pred HHHhhhhcCCcEEEEE
Q 042534 237 AHVEAESAVNGIGLVK 252 (447)
Q Consensus 237 i~~~A~S~~~~v~iVe 252 (447)
+.. .. +++|.++-
T Consensus 117 L~~--~G-~~~I~~i~ 129 (288)
T 2qu7_A 117 VLE--ST-CKEVGLLL 129 (288)
T ss_dssp HHT--SS-CCCEEEEE
T ss_pred HHH--cC-CCcEEEEe
Confidence 332 23 67888875
No 120
>3lp8_A Phosphoribosylamine-glycine ligase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.15A {Ehrlichia chaffeensis}
Probab=34.34 E-value=78 Score=31.94 Aligned_cols=96 Identities=11% Similarity=0.205 Sum_probs=51.7
Q ss_pred cCCCCceEEEEccCCCCccHHHHHHHHHHHHHHhcCCeEEEEEcccccccccCCCCeEECChhhhhchhccCCccccccC
Q 042534 76 FEPKNTRAAIVTCGGLCPGLNTVIRELVVGLWELYGVRQILGIQAGYRGFYSTTRNPLVLNPKMVRGWHKLGGTVLETSR 155 (447)
Q Consensus 76 f~p~~~kiaIvtsGG~~PGlN~vIr~vv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~~~L~~~~v~~i~~~GGt~LGssR 155 (447)
..|..+||.||-+||- -++ +++.+.+..++.+||-. .|-.|..... ..+. +
T Consensus 17 ~~p~~m~ilvlG~ggr---e~a----la~~l~~s~~v~~v~~~-pgn~g~~~~~-~~~~----------------i---- 67 (442)
T 3lp8_A 17 QGPGSMNVLVIGSGGR---EHS----MLHHIRKSTLLNKLFIA-PGREGMSGLA-DIID----------------I---- 67 (442)
T ss_dssp ---CCEEEEEEECSHH---HHH----HHHHHTTCTTEEEEEEE-ECCGGGTTTS-EECC----------------C----
T ss_pred CCCCCCEEEEECCChH---HHH----HHHHHHhCCCCCEEEEE-CCChHHhhcc-ceee----------------c----
Confidence 5778899999988842 233 44445445566677765 2333333211 0000 0
Q ss_pred CcccHHHHHHHHHHcCCCEEEEecCCCcHHHHHHHHHHHHHcCCcceEee
Q 042534 156 GGFDLHQIVDAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVG 205 (447)
Q Consensus 156 ~~~~~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVg 205 (447)
...|.+.+++.++++++|.+++ |.+..+ +..+++.+++.| ++++|
T Consensus 68 ~~~d~~~l~~~a~~~~id~vv~-g~E~~l--~~~~~~~l~~~G--i~~~G 112 (442)
T 3lp8_A 68 DINSTIEVIQVCKKEKIELVVI-GPETPL--MNGLSDALTEEG--ILVFG 112 (442)
T ss_dssp CTTCHHHHHHHHHHTTCCEEEE-CSHHHH--HTTHHHHHHHTT--CEEES
T ss_pred CcCCHHHHHHHHHHhCCCEEEE-CCcHHH--HHHHHHHHHhcC--CcEec
Confidence 1246888889999999997665 443322 223555555544 45554
No 121
>3ors_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase, isomerase,biosynthetic protein; 1.45A {Staphylococcus aureus subsp}
Probab=34.12 E-value=67 Score=28.62 Aligned_cols=89 Identities=17% Similarity=0.263 Sum_probs=53.9
Q ss_pred ccccCCcccHHHHHHHHHHcCCCEEEEe-cCCCcHHHHHHHHHHHHHcCCcceEeeecccccccccCcCcccChhhHHHH
Q 042534 151 LETSRGGFDLHQIVDAIQTNAFNQVYII-GGDGTMRGAVEIFDEIQRRKINVGVVGIPKTVDNDVGIIDRSFGFQTAVEM 229 (447)
Q Consensus 151 LGssR~~~~~~~iv~~l~~~~Id~L~vI-GGdgS~~~A~~L~~~~~~~~~~i~VVgIPkTIDNDi~~tD~s~GFdTAv~~ 229 (447)
.+--|....+.++.++.++.+++.+|++ |+.+.+-+.. +-. ...+|||||-... ++ -|.|
T Consensus 38 ~SaHR~p~~~~~~~~~a~~~g~~ViIa~AG~aa~Lpgvv--A~~-----t~~PVIgVP~~~~-~l------~G~d----- 98 (163)
T 3ors_A 38 VSAHRTPKMMVQFASEARERGINIIIAGAGGAAHLPGMV--ASL-----TTLPVIGVPIETK-SL------KGID----- 98 (163)
T ss_dssp CCTTTSHHHHHHHHHHTTTTTCCEEEEEEESSCCHHHHH--HHH-----CSSCEEEEEECCT-TT------TTHH-----
T ss_pred ECCcCCHHHHHHHHHHHHhCCCcEEEEECCchhhhHHHH--Hhc-----cCCCEEEeeCCCC-CC------CCHH-----
Confidence 3334655567788888888899977766 4455555543 211 4689999996532 12 1333
Q ss_pred HHHHHHHHHHhhhhcCCcE--EEEEec---CCccchHHHHH
Q 042534 230 AQQAISAAHVEAESAVNGI--GLVKLM---GRSTGHIALHA 265 (447)
Q Consensus 230 ~~~ai~~i~~~A~S~~~~v--~iVevM---GR~sG~lAl~a 265 (447)
++....+ ++.++ ..|=+- |.++|++|+..
T Consensus 99 ------sLlS~vq-mp~GvPVatV~I~~a~~~nAa~lAa~I 132 (163)
T 3ors_A 99 ------SLLSIVQ-MPGGIPVATTAIGAAGAKNAGILAARM 132 (163)
T ss_dssp ------HHHHHHT-CCTTSCCEECCSTHHHHHHHHHHHHHH
T ss_pred ------HHHHHhh-CCCCCceEEEEcCCcccHHHHHHHHHH
Confidence 2333333 35665 666663 78888888654
No 122
>2obn_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; HET: PG4; 2.30A {Anabaena variabilis}
Probab=33.32 E-value=1.2e+02 Score=30.10 Aligned_cols=159 Identities=18% Similarity=0.217 Sum_probs=86.2
Q ss_pred cCCCCceEEEEccCCCCccHHHHHHHHHHHHHHhcCCeEEEEEcccccccccCCCCeEECChhhhhchhccCCccccccC
Q 042534 76 FEPKNTRAAIVTCGGLCPGLNTVIRELVVGLWELYGVRQILGIQAGYRGFYSTTRNPLVLNPKMVRGWHKLGGTVLETSR 155 (447)
Q Consensus 76 f~p~~~kiaIvtsGG~~PGlN~vIr~vv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~~~L~~~~v~~i~~~GGt~LGssR 155 (447)
+.|+.+=+|+..+||.-|- .....+.+.+ +.|.+-|-|.+. ++.++ ++ +......|-+++.+..
T Consensus 72 ~~~d~lvig~a~~gG~l~~--~~~~~i~~Al--~~G~~Vvsglh~----~l~~~-------pe-l~~~A~~g~~i~dvr~ 135 (349)
T 2obn_A 72 YKPQVLVIGIAPKGGGIPD--DYWIELKTAL--QAGMSLVNGLHT----PLANI-------PD-LNALLQPGQLIWDVRK 135 (349)
T ss_dssp GCCSEEEECCCCCCC-SCG--GGHHHHHHHH--HTTCEEEECSSS----CCTTC-------HH-HHHHCCTTCCEEETTC
T ss_pred CCCCEEEEEecCCCCCCCH--HHHHHHHHHH--HcCCcEEeCccc----hhhCC-------HH-HHHHHHcCCEEEEecc
Confidence 4566666777777998885 3444444443 367643444332 34333 22 3444444555777654
Q ss_pred CcccHHHHHHHHHHcCCCEEEEecCCCc---HHHHHHHHHHHHHcCCcceEeeeccc---ccccccCcCcccChhhHHHH
Q 042534 156 GGFDLHQIVDAIQTNAFNQVYIIGGDGT---MRGAVEIFDEIQRRKINVGVVGIPKT---VDNDVGIIDRSFGFQTAVEM 229 (447)
Q Consensus 156 ~~~~~~~iv~~l~~~~Id~L~vIGGdgS---~~~A~~L~~~~~~~~~~i~VVgIPkT---IDNDi~~tD~s~GFdTAv~~ 229 (447)
-+.++.-.....++.....+++.|=|-+ +..+..|.+.++++|++...+.---| |+...-..|.-+ +.+
T Consensus 136 pp~~l~~~~g~~~~v~~k~i~v~GTD~~VGK~~ts~~L~~~l~~~G~~a~~~~tgqtg~~~~~~gi~~Dav~-----~df 210 (349)
T 2obn_A 136 EPANLDVASGAARTLPCRRVLTVGTDMAIGKMSTSLELHWAAKLRGWRSKFLATGQTGVMLEGDGVALDAVR-----VDF 210 (349)
T ss_dssp CCSSCCCCCSGGGGCSSEEEEEEESSSSSSHHHHHHHHHHHHHHTTCCEEEECCSHHHHHHHSCSCCGGGSB-----HHH
T ss_pred CcccccccccceeeecceEEEEcCCCccccceeHHHHHHHHHHhcCCcEEEEeccchhhhhhcCCcchhHHH-----HHH
Confidence 3312211111223445667999998644 78889999999999998777653333 222222223211 333
Q ss_pred HHHHHHHHHHhhhhcCCcEEEEEecCC
Q 042534 230 AQQAISAAHVEAESAVNGIGLVKLMGR 256 (447)
Q Consensus 230 ~~~ai~~i~~~A~S~~~~v~iVevMGR 256 (447)
++-++..+..++.. ..-|-+||=.|-
T Consensus 211 ~aG~ve~~~~~~~~-~~d~vlVEGqGg 236 (349)
T 2obn_A 211 AAGAVEQMVMRYGK-NYDILHIEGQGS 236 (349)
T ss_dssp HHHHHHHHHHHHTT-TCSEEEECCCCC
T ss_pred HhhhHHHHHHHhcc-CCCEEEEeCCCc
Confidence 34455555555543 346889997663
No 123
>1fa2_A Beta-amylase; TIM barrel, hydrolase; HET: DOM; 2.30A {Ipomoea batatas} SCOP: c.1.8.1
Probab=33.25 E-value=1.8e+02 Score=30.31 Aligned_cols=85 Identities=16% Similarity=0.271 Sum_probs=66.7
Q ss_pred HHHHHHHHHHcCCCEEEEe--------cCCC--cHHHHHHHHHHHHHcCCcceEe--------------ee--ccc----
Q 042534 160 LHQIVDAIQTNAFNQVYII--------GGDG--TMRGAVEIFDEIQRRKINVGVV--------------GI--PKT---- 209 (447)
Q Consensus 160 ~~~iv~~l~~~~Id~L~vI--------GGdg--S~~~A~~L~~~~~~~~~~i~VV--------------gI--PkT---- 209 (447)
++.=++.||..|++++.+= -|.+ --.+=.+|++.+++.|+++.+| .| |+-
T Consensus 36 l~~~L~~LK~~GVdGVmvDVWWGiVE~~~P~~YdWsgY~~L~~mv~~~GLKlq~vmSFHqCGgNVGD~~~IPLP~WV~~~ 115 (498)
T 1fa2_A 36 VEDELKQVKAGGCDGVMVDVWWGIIEAKGPKQYDWSAYRELFQLVKKCGLKIQAIMSFHQCGGNVGDAVFIPIPQWILQI 115 (498)
T ss_dssp HHHHHHHHHHTTCCEEEEEEEHHHHTCSBTTBCCCHHHHHHHHHHHHTTCEEEEEEECSCBCCCTTCCCCBCSCHHHHHH
T ss_pred HHHHHHHHHHcCCCEEEEEeEeeeeccCCCCccCcHHHHHHHHHHHHcCCeEEEEEEeeecCCCCCCcccccCCHHHHHh
Confidence 5666888999999999872 2344 3566788999999999999887 34 443
Q ss_pred --ccccccCcCc---------ccChh--------hHHHHHHHHHHHHHHhhhhc
Q 042534 210 --VDNDVGIIDR---------SFGFQ--------TAVEMAQQAISAAHVEAESA 244 (447)
Q Consensus 210 --IDNDi~~tD~---------s~GFd--------TAv~~~~~ai~~i~~~A~S~ 244 (447)
=|.||.+||+ |+|.| |+++...+...+.+.+-.+.
T Consensus 116 ~~~~pDi~ftDr~G~rn~EyLSlg~D~~pvl~GRTpiq~Y~Dfm~SFr~~F~~~ 169 (498)
T 1fa2_A 116 GDKNPDIFYTNRAGNRNQEYLSLGVDNQRLFQGRTALEMYRDFMESFRDNMADF 169 (498)
T ss_dssp TTTCGGGEEECTTCCEEEEEECGGGTTCEEETTEEHHHHHHHHHHHHHHHSHHH
T ss_pred hccCCCceEECCCCCccccccccccccccccCCCCHHHHHHHHHHHHHHHHHHh
Confidence 3459999985 88988 88999999999999887663
No 124
>4evq_A Putative ABC transporter subunit, substrate-bindi component; structural genomics, PSI-biology, midwest center for structu genomics; HET: MSE PHB; 1.40A {Rhodopseudomonas palustris} PDB: 4evr_A
Probab=32.52 E-value=71 Score=30.23 Aligned_cols=102 Identities=12% Similarity=0.188 Sum_probs=59.8
Q ss_pred ccHHHHHHHHHHHHHHhcCCeEEEEEcccccccccCCCCe-EECChhhhhchhccCCccccccC---CcccHHHHHHHHH
Q 042534 93 PGLNTVIRELVVGLWELYGVRQILGIQAGYRGFYSTTRNP-LVLNPKMVRGWHKLGGTVLETSR---GGFDLHQIVDAIQ 168 (447)
Q Consensus 93 PGlN~vIr~vv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~-~~L~~~~v~~i~~~GGt~LGssR---~~~~~~~iv~~l~ 168 (447)
|--....+.+++.+.+ .|+++|.-+.... . + .+.-....+.+...|+.+..... +..++...++.++
T Consensus 133 ~~~~~~~~~~~~~l~~-~g~~~ia~i~~~~------~--~~~~~~~~~~~~l~~~G~~v~~~~~~~~~~~d~~~~~~~l~ 203 (375)
T 4evq_A 133 FANGQIGRATGDAMIK-AGLKKAVTVTWKY------A--AGEEMVSGFKKSFTAGKGEVVKDITIAFPDVEFQSALAEIA 203 (375)
T ss_dssp CCHHHHHHHHHHHHHH-TTCCEEEEEEESS------H--HHHHHHHHHHHHHHHTTCEEEEEEEECTTCCCCHHHHHHHH
T ss_pred CChHhHHHHHHHHHHH-cCCcEEEEEecCc------h--HHHHHHHHHHHHHHHcCCeEEEEEecCCCCccHHHHHHHHH
Confidence 3344566777777754 5776666552111 0 0 00011122334455665544322 2346778888888
Q ss_pred HcCCCEEEEecCCCcHHHHHHHHHHHHHcCCcceEeee
Q 042534 169 TNAFNQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGI 206 (447)
Q Consensus 169 ~~~Id~L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVgI 206 (447)
+.+.|++|+.+-+. .|..+.+.+++.|+++++++.
T Consensus 204 ~~~~dai~~~~~~~---~a~~~~~~~~~~g~~vp~~~~ 238 (375)
T 4evq_A 204 SLKPDCVYAFFSGG---GALKFIKDYAAANLGIPLWGP 238 (375)
T ss_dssp HHCCSEEEEECCTH---HHHHHHHHHHHTTCCCCEEEE
T ss_pred hcCCCEEEEecCcc---hHHHHHHHHHHcCCCceEEec
Confidence 99999999876553 344555777888998888875
No 125
>4eyg_A Twin-arginine translocation pathway signal; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: VNL; 1.86A {Rhodopseudomonas palustris} PDB: 4ey3_A* 3t0n_A* 4eyk_A*
Probab=32.33 E-value=54 Score=30.98 Aligned_cols=103 Identities=12% Similarity=0.193 Sum_probs=59.3
Q ss_pred ccHHHHHHHHHHHHHHhcCCeEEEEEcccccccccCCCCe-EECChhhhhchhccCCccccccC---CcccHHHHHHHHH
Q 042534 93 PGLNTVIRELVVGLWELYGVRQILGIQAGYRGFYSTTRNP-LVLNPKMVRGWHKLGGTVLETSR---GGFDLHQIVDAIQ 168 (447)
Q Consensus 93 PGlN~vIr~vv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~-~~L~~~~v~~i~~~GGt~LGssR---~~~~~~~iv~~l~ 168 (447)
|--....+.+++.+. ..|+++|.-+...+ . + ........+.+...|+.+..... +..|....++.++
T Consensus 121 ~~~~~~~~~~~~~l~-~~g~~~ia~i~~~~------~--~g~~~~~~~~~~l~~~g~~v~~~~~~~~~~~d~~~~~~~l~ 191 (368)
T 4eyg_A 121 FTLAQSSIIIGDWAA-KNGIKKVATLTSDY------A--PGNDALAFFKERFTAGGGEIVEEIKVPLANPDFAPFLQRMK 191 (368)
T ss_dssp CCHHHHHHHHHHHHH-HTTCCEEEEEEESS------H--HHHHHHHHHHHHHHHTTCEEEEEEEECSSSCCCHHHHHHHH
T ss_pred CChHHHHHHHHHHHH-HcCCCEEEEEecCc------h--HhHHHHHHHHHHHHHcCCEEEEEEeCCCCCCcHHHHHHHHH
Confidence 334455667777775 45776665553111 0 0 00011122334456666554432 2246778888999
Q ss_pred HcCCCEEEEecCCCcHHHHHHHHHHHHHcCCc---ceEeeec
Q 042534 169 TNAFNQVYIIGGDGTMRGAVEIFDEIQRRKIN---VGVVGIP 207 (447)
Q Consensus 169 ~~~Id~L~vIGGdgS~~~A~~L~~~~~~~~~~---i~VVgIP 207 (447)
+.+.|++|+.+.+. .+..+.+.+++.|+. +++++..
T Consensus 192 ~~~~d~v~~~~~~~---~a~~~~~~~~~~g~~~~~v~~~~~~ 230 (368)
T 4eyg_A 192 DAKPDAMFVFVPAG---QGGNFMKQFAERGLDKSGIKVIGPG 230 (368)
T ss_dssp HHCCSEEEEECCTT---CHHHHHHHHHHTTGGGTTCEEEEET
T ss_pred hcCCCEEEEeccch---HHHHHHHHHHHcCCCcCCceEEecC
Confidence 99999999977665 334455666777876 6676653
No 126
>3kuu_A Phosphoribosylaminoimidazole carboxylase catalyti PURE; 3-layer (ABA) sandwich, rossmann fold, csgid, lyase, structu genomics; 1.41A {Yersinia pestis} SCOP: c.23.8.1 PDB: 1d7a_A* 1qcz_A 2ate_A* 2nsl_A* 2nsh_A* 2nsj_A*
Probab=32.28 E-value=61 Score=29.19 Aligned_cols=51 Identities=20% Similarity=0.303 Sum_probs=34.2
Q ss_pred cccCCcccHHHHHHHHHHcCCCEEEEec-CCCcHHHHHHHHHHHHHcCCcceEeeeccc
Q 042534 152 ETSRGGFDLHQIVDAIQTNAFNQVYIIG-GDGTMRGAVEIFDEIQRRKINVGVVGIPKT 209 (447)
Q Consensus 152 GssR~~~~~~~iv~~l~~~~Id~L~vIG-GdgS~~~A~~L~~~~~~~~~~i~VVgIPkT 209 (447)
+--|....+.+++++.++.+++.+|++- +.+.+-+.. +- ....+|||||-.
T Consensus 48 SaHR~p~~~~~~~~~a~~~g~~ViIa~AG~aa~Lpgvv--A~-----~t~~PVIgVP~~ 99 (174)
T 3kuu_A 48 SAHRTPDRLFSFAEQAEANGLHVIIAGNGGAAHLPGML--AA-----KTLVPVLGVPVQ 99 (174)
T ss_dssp CTTTCHHHHHHHHHHTTTTTCSEEEEEEESSCCHHHHH--HH-----TCSSCEEEEEEC
T ss_pred cccCCHHHHHHHHHHHHhCCCcEEEEECChhhhhHHHH--Hh-----ccCCCEEEeeCC
Confidence 3346655677888888889999777664 445555443 21 246899999964
No 127
>3td9_A Branched chain amino acid ABC transporter, peripl amino acid-binding protein; leucine binding, structural genomics; HET: MSE PHE; 1.90A {Thermotoga maritima}
Probab=31.93 E-value=96 Score=29.28 Aligned_cols=107 Identities=15% Similarity=0.137 Sum_probs=61.5
Q ss_pred CccHHHHHHHHHHHHHHhcCCeEEEEEcccccccccCCCCeEECChhhhhchhccCCcccccc--CCcccHHHHHHHHHH
Q 042534 92 CPGLNTVIRELVVGLWELYGVRQILGIQAGYRGFYSTTRNPLVLNPKMVRGWHKLGGTVLETS--RGGFDLHQIVDAIQT 169 (447)
Q Consensus 92 ~PGlN~vIr~vv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~~~L~~~~v~~i~~~GGt~LGss--R~~~~~~~iv~~l~~ 169 (447)
+|.-....+.+++.+.+++|+++|.-+. +-..-+... +.....+.+...|+.+.... .+..|+...++.+++
T Consensus 129 ~~~~~~~~~~~~~~l~~~~g~~~iaii~-~~~~~~~~~-----~~~~~~~~~~~~G~~v~~~~~~~~~~d~~~~~~~l~~ 202 (366)
T 3td9_A 129 CFIDPFQGAAMAVFAYKNLGAKRVVVFT-DVEQDYSVG-----LSNFFINKFTELGGQVKRVFFRSGDQDFSAQLSVAMS 202 (366)
T ss_dssp SCCHHHHHHHHHHHHHHTSCCCEEEEEE-ETTCHHHHH-----HHHHHHHHHHHTTCEEEEEEECTTCCCCHHHHHHHHH
T ss_pred eCCcHHHHHHHHHHHHHhcCCcEEEEEE-eCCCcHHHH-----HHHHHHHHHHHCCCEEEEEEeCCCCccHHHHHHHHHh
Confidence 3444455677777775556877665552 100000000 11112233445566655432 223467788889999
Q ss_pred cCCCEEEEecCCCcHHHHHHHHHHHHHcCCcceEeeec
Q 042534 170 NAFNQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGIP 207 (447)
Q Consensus 170 ~~Id~L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVgIP 207 (447)
.+.|++|+.+-+ ..+..+.+.+++.|+++++++..
T Consensus 203 ~~~d~v~~~~~~---~~a~~~~~~~~~~g~~~~~~~~~ 237 (366)
T 3td9_A 203 FNPDAIYITGYY---PEIALISRQARQLGFTGYILAGD 237 (366)
T ss_dssp TCCSEEEECSCH---HHHHHHHHHHHHTTCCSEEEECG
T ss_pred cCCCEEEEccch---hHHHHHHHHHHHcCCCceEEeeC
Confidence 999999886543 33445667788889988877654
No 128
>1uta_A FTSN, MSGA, cell division protein FTSN; bacterial cell division protein, RNP domain, transmembrane, inner membrane, repeat; NMR {Escherichia coli} SCOP: d.58.52.1
Probab=31.93 E-value=65 Score=24.43 Aligned_cols=53 Identities=11% Similarity=0.139 Sum_probs=40.0
Q ss_pred ccccCCcccHHHHHHHHHHcCCC---------EEEEecCCCcHHHHHHHHHHHHHcCCcceE
Q 042534 151 LETSRGGFDLHQIVDAIQTNAFN---------QVYIIGGDGTMRGAVEIFDEIQRRKINVGV 203 (447)
Q Consensus 151 LGssR~~~~~~~iv~~l~~~~Id---------~L~vIGGdgS~~~A~~L~~~~~~~~~~i~V 203 (447)
+|+-+...+-+++.+.|+..++. +-|.+|...+...|..+.+.+++.|++-.+
T Consensus 14 vGaF~~~~~A~~l~~~L~~~G~~a~i~~~~~~yRV~vGpf~s~~~A~~~~~~L~~~g~~~~i 75 (81)
T 1uta_A 14 CGSFRGAEQAETVRAQLAFEGFDSKITTNNGWNRVVIGPVKGKENADSTLNRLKMAGHTNCI 75 (81)
T ss_dssp CCEESCHHHHHHHHHHHHHHTCCEEEEECSSSEEEEESSCBTTTHHHHHHHHHHHHCCSCCB
T ss_pred EEEcCCHHHHHHHHHHHHhCCCCeEEEeCCcEEEEEECCcCCHHHHHHHHHHHHHcCCCcEE
Confidence 35555555678888999888877 457788888999999998888887765433
No 129
>2fvy_A D-galactose-binding periplasmic protein; periplasmic binding protien, hinge, chemotaxis, transport,; HET: BGC; 0.92A {Escherichia coli} SCOP: c.93.1.1 PDB: 1glg_A* 2fw0_A* 2gbp_A* 2qw1_A* 2hph_A* 2ipn_A* 2ipm_A* 2ipl_A* 1gca_A* 1gcg_A 3ga5_A* 3gbp_A*
Probab=31.83 E-value=2.9e+02 Score=24.96 Aligned_cols=90 Identities=16% Similarity=0.076 Sum_probs=54.0
Q ss_pred ceEEEEccCCCCccHHHHHHHHHHHHHHhcCCeEEEEEcccccccccCCCCeEECChhhhhchhccCCccccccCCc-cc
Q 042534 81 TRAAIVTCGGLCPGLNTVIRELVVGLWELYGVRQILGIQAGYRGFYSTTRNPLVLNPKMVRGWHKLGGTVLETSRGG-FD 159 (447)
Q Consensus 81 ~kiaIvtsGG~~PGlN~vIr~vv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~~~L~~~~v~~i~~~GGt~LGssR~~-~~ 159 (447)
.+||+++..-.-|-...++.++-+.+. .+|+.++. +-.+... ..
T Consensus 3 ~~Igvi~~~~~~~~~~~~~~gi~~~a~-~~g~~~~~----------------------------------~~~~~~~~~~ 47 (309)
T 2fvy_A 3 TRIGVTIYKYDDNFMSVVRKAIEQDAK-AAPDVQLL----------------------------------MNDSQNDQSK 47 (309)
T ss_dssp EEEEEEESCTTSHHHHHHHHHHHHHHH-TCTTEEEE----------------------------------EEECTTCHHH
T ss_pred cEEEEEeccCCcHHHHHHHHHHHHHHH-hcCCeEEE----------------------------------EecCCCCHHH
Confidence 579999877677888888888888774 44420111 0011111 12
Q ss_pred HHHHHHHHHHcCCCEEEEecCCCcHHHHHHHHHHHHHcCCcceEeeeccc
Q 042534 160 LHQIVDAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGIPKT 209 (447)
Q Consensus 160 ~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVgIPkT 209 (447)
..+.++.+...++|++++.+.+.+.. ....+.+.+. +++||.+-..
T Consensus 48 ~~~~~~~~~~~~vdgiii~~~~~~~~--~~~~~~~~~~--~iPvV~~~~~ 93 (309)
T 2fvy_A 48 QNDQIDVLLAKGVKALAINLVDPAAA--GTVIEKARGQ--NVPVVFFNKE 93 (309)
T ss_dssp HHHHHHHHHHTTCSEEEECCSSGGGH--HHHHHHHHTT--TCCEEEESSC
T ss_pred HHHHHHHHHHcCCCEEEEeCCCcchh--HHHHHHHHHC--CCcEEEecCC
Confidence 34677888889999999998776521 1222333333 5677766433
No 130
>3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4
Probab=31.48 E-value=3.4e+02 Score=25.67 Aligned_cols=135 Identities=14% Similarity=0.206 Sum_probs=78.4
Q ss_pred HHHHHHHHHHcCCCEE--EEecCCCcHHHHHHHHHHHHHcCCcceEeeeccccccccc----CcC----cccChhhHHHH
Q 042534 160 LHQIVDAIQTNAFNQV--YIIGGDGTMRGAVEIFDEIQRRKINVGVVGIPKTVDNDVG----IID----RSFGFQTAVEM 229 (447)
Q Consensus 160 ~~~iv~~l~~~~Id~L--~vIGGdgS~~~A~~L~~~~~~~~~~i~VVgIPkTIDNDi~----~tD----~s~GFdTAv~~ 229 (447)
+++..+.|++.+=.+| |+.-||-++....++.+.+.+.|..+-=+|+|=+ |-. .+. +.+-..+-++.
T Consensus 7 i~~~f~~~~~~~~~ali~yi~aGdP~~~~~~~~~~~l~~~GaD~iElGiPfS---DP~aDGpvIq~a~~rAL~~G~~~~~ 83 (271)
T 3nav_A 7 YQALFQRLSAAQQGAFVPFVTIGDPNPEQSLAIMQTLIDAGADALELGMPFS---DPLADGPTIQGANLRALAAKTTPDI 83 (271)
T ss_dssp HHHHHHHHHHTTBCEEEEEEETTSSCHHHHHHHHHHHHHTTCSSEEEECCCC---CGGGCCSHHHHHHHHHHHTTCCHHH
T ss_pred HHHHHHHHHhcCCCeEEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEECCCCC---CCCCCCHHHHHHHHHHHHcCCCHHH
Confidence 5677778877665554 7789999999999999999999999888999962 221 111 11111122334
Q ss_pred HHHHHHHHHHhhhhcCCcEEEEEecCCcc-----chHH-HHHhhccCCccEEecCCCCCCcchhhhHHHHHHHHHhhCCc
Q 042534 230 AQQAISAAHVEAESAVNGIGLVKLMGRST-----GHIA-LHATLSSRDVDCCLIPEMEFYLEGKGGLVEFLDNRLKENGH 303 (447)
Q Consensus 230 ~~~ai~~i~~~A~S~~~~v~iVevMGR~s-----G~lA-l~aaLA~~~ad~ilIPE~~f~le~~~~l~~~i~~r~~~k~~ 303 (447)
+-+.+..++..-...+ +. +||=.- |.-. +..+..+| +|-+++|..|+.. .+.+.+..++.+-
T Consensus 84 ~~~~v~~~r~~~~~~P--iv---lm~Y~n~v~~~g~~~f~~~~~~aG-vdGvIipDlp~ee------~~~~~~~~~~~gl 151 (271)
T 3nav_A 84 CFELIAQIRARNPETP--IG---LLMYANLVYARGIDDFYQRCQKAG-VDSVLIADVPTNE------SQPFVAAAEKFGI 151 (271)
T ss_dssp HHHHHHHHHHHCTTSC--EE---EEECHHHHHHTCHHHHHHHHHHHT-CCEEEETTSCGGG------CHHHHHHHHHTTC
T ss_pred HHHHHHHHHhcCCCCC--EE---EEecCcHHHHHhHHHHHHHHHHCC-CCEEEECCCCHHH------HHHHHHHHHHcCC
Confidence 4556666664421212 32 454211 2221 22333455 9999999988732 2344444555554
Q ss_pred EEE-EEe
Q 042534 304 AVL-VVA 309 (447)
Q Consensus 304 ~vI-vva 309 (447)
.+| +++
T Consensus 152 ~~I~lva 158 (271)
T 3nav_A 152 QPIFIAP 158 (271)
T ss_dssp EEEEEEC
T ss_pred eEEEEEC
Confidence 434 553
No 131
>1x60_A Sporulation-specific N-acetylmuramoyl-L-alanine amidase; CWLC, CWLCR, peptidoglycan, cell WALL lytic amidase, tandem repeats, hydrolase; NMR {Bacillus subtilis}
Probab=30.88 E-value=73 Score=23.82 Aligned_cols=51 Identities=8% Similarity=0.106 Sum_probs=38.4
Q ss_pred ccccCCcccHHHHHHHHHHcCCC---------EEEEecCCCcHHHHHHHHHHHHHcCCcc
Q 042534 151 LETSRGGFDLHQIVDAIQTNAFN---------QVYIIGGDGTMRGAVEIFDEIQRRKINV 201 (447)
Q Consensus 151 LGssR~~~~~~~iv~~l~~~~Id---------~L~vIGGdgS~~~A~~L~~~~~~~~~~i 201 (447)
+|+-+...+-++..+.|++.+++ +-+.+|...+...|..+.+.+++.|++.
T Consensus 14 vGaf~~~~~A~~~~~~L~~~g~~~~i~~~~~~yRV~vGpf~~~~~A~~~~~~L~~~g~~~ 73 (79)
T 1x60_A 14 IGAFKVKANADSLASNAEAKGFDSIVLLKDGLYKVQIGAFSSKDNADTLAARAKNAGFDA 73 (79)
T ss_dssp EEEESCHHHHHHHHHHHHHHTCCEEEEEETTEEEEEEEEESSHHHHHHHHHHHHHHTSCC
T ss_pred EEEcCCHHHHHHHHHHHHhCCCCeEEecCCcEEEEEECCcCCHHHHHHHHHHHHHcCCce
Confidence 35545445678888888888877 4467788888899999988888877753
No 132
>1vdr_A DHFR, dihydrofolate reductase; oxidoreductase, halophilic enzyme; 2.55A {Haloferax volcanii} SCOP: c.71.1.1 PDB: 2ith_A 2jyb_A
Probab=30.08 E-value=19 Score=31.27 Aligned_cols=51 Identities=18% Similarity=0.259 Sum_probs=40.2
Q ss_pred cHHHHHHHHHHcCCCEEEEecCCCcHHHHHHHHHHHHHcCCcceEeeecccccccccC
Q 042534 159 DLHQIVDAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGIPKTVDNDVGI 216 (447)
Q Consensus 159 ~~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVgIPkTIDNDi~~ 216 (447)
+++++++.|++.+.+-+++|||-..++.+..+.+ .+.+--||..++.|..+
T Consensus 81 ~~~~~l~~l~~~~~~~i~viGG~~l~~~~l~lvD-------el~lt~ip~~~~G~~~F 131 (162)
T 1vdr_A 81 SVEEAVDIAASLDAETAYVIGGAAIYALFQPHLD-------RMVLSRVPGEYEGDTYY 131 (162)
T ss_dssp SHHHHHHHHHHTTCSCEEEEECHHHHHHHGGGCS-------EEEEEEEEEECCCSEEC
T ss_pred CHHHHHHHHHhCCCCcEEEECCHHHHHHHHHhCC-------EEEEEEEccccccCEEC
Confidence 6889999999888889999999777777665443 46677889988777654
No 133
>4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B*
Probab=29.46 E-value=86 Score=33.21 Aligned_cols=100 Identities=18% Similarity=0.121 Sum_probs=47.3
Q ss_pred HHHHHHHcCCCEEEEecCCCcHHHHHHHHHHHHHcCCcceEeee-cccccccccCcCcccChhhHHHHHHHHHHHHHHhh
Q 042534 163 IVDAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGI-PKTVDNDVGIIDRSFGFQTAVEMAQQAISAAHVEA 241 (447)
Q Consensus 163 iv~~l~~~~Id~L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVgI-PkTIDNDi~~tD~s~GFdTAv~~~~~ai~~i~~~A 241 (447)
.++.+++.--+.-++.|.-.|..+|..|.+ .|...--||| |.+|.--=..+-.-...-||+-.++++...
T Consensus 312 ~i~~ik~~~p~~~viaGNVaT~e~a~~Li~----aGAD~vkVGiGpGSiCtTr~v~GvG~PQ~tAi~~~a~~a~~----- 382 (556)
T 4af0_A 312 FIKWIKQTYPKIDVIAGNVVTREQAAQLIA----AGADGLRIGMGSGSICITQEVMAVGRPQGTAVYAVAEFASR----- 382 (556)
T ss_dssp HHHHHHHHCTTSEEEEEEECSHHHHHHHHH----HTCSEEEECSSCSTTBCCTTTCCSCCCHHHHHHHHHHHHGG-----
T ss_pred HHHHHHhhCCcceEEeccccCHHHHHHHHH----cCCCEEeecCCCCcccccccccCCCCcHHHHHHHHHHHHHH-----
Confidence 333334333333334444445555555543 3444444444 554432111111123445666665544222
Q ss_pred hhcCCcEEEEEecC-CccchHHHHHhhccCCccEEecC
Q 042534 242 ESAVNGIGLVKLMG-RSTGHIALHATLSSRDVDCCLIP 278 (447)
Q Consensus 242 ~S~~~~v~iVevMG-R~sG~lAl~aaLA~~~ad~ilIP 278 (447)
.++.||===| |++|+||- |||.| ||.+.+-
T Consensus 383 ----~~vpvIADGGI~~sGDi~K--AlaaG-Ad~VMlG 413 (556)
T 4af0_A 383 ----FGIPCIADGGIGNIGHIAK--ALALG-ASAVMMG 413 (556)
T ss_dssp ----GTCCEEEESCCCSHHHHHH--HHHTT-CSEEEES
T ss_pred ----cCCCEEecCCcCcchHHHH--HhhcC-CCEEEEc
Confidence 1344443222 78999986 55666 8888774
No 134
>2x7x_A Sensor protein; transferase, sensor histidine kinase; HET: FRU; 2.64A {Bacteroides thetaiotaomicron}
Probab=29.27 E-value=3.4e+02 Score=25.03 Aligned_cols=126 Identities=12% Similarity=0.146 Sum_probs=65.9
Q ss_pred CceEEEEccCCCCccHHHHHHHHHHHHHHhc-CCeEEEEEcccccccccCCCCeEECChhhhhchhccCCccccccCCc-
Q 042534 80 NTRAAIVTCGGLCPGLNTVIRELVVGLWELY-GVRQILGIQAGYRGFYSTTRNPLVLNPKMVRGWHKLGGTVLETSRGG- 157 (447)
Q Consensus 80 ~~kiaIvtsGG~~PGlN~vIr~vv~~~~~~~-~~~~V~Gi~~G~~GL~~~~~~~~~L~~~~v~~i~~~GGt~LGssR~~- 157 (447)
..+||+++.. .-|=...++.++-+.+. .+ |+ ++. +..+...
T Consensus 6 ~~~Igvi~~~-~~~~~~~~~~gi~~~a~-~~~g~-~l~----------------------------------i~~~~~~~ 48 (325)
T 2x7x_A 6 HFRIGVAQCS-DDSWRHKMNDEILREAM-FYNGV-SVE----------------------------------IRSAGDDN 48 (325)
T ss_dssp CCEEEEEESC-CSHHHHHHHHHHHHHHT-TSSSC-EEE----------------------------------EEECTTCH
T ss_pred CeEEEEEecC-CCHHHHHHHHHHHHHHH-HcCCc-EEE----------------------------------EeCCCCCH
Confidence 4679999876 66666677777777663 33 33 111 0011111
Q ss_pred ccHHHHHHHHHHcCCCEEEEecCCCcHHHHHHHHHHHHHcCCcceEeeecccccccccCc--CcccChhhHHHHHHHHHH
Q 042534 158 FDLHQIVDAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGIPKTVDNDVGII--DRSFGFQTAVEMAQQAIS 235 (447)
Q Consensus 158 ~~~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVgIPkTIDNDi~~t--D~s~GFdTAv~~~~~ai~ 235 (447)
....+.++.+...++|++++.+.+.+. .....+.+.+. +++||.+ |++++.. ..++++|-. ..+..+.+
T Consensus 49 ~~~~~~i~~l~~~~vdgiIi~~~~~~~--~~~~~~~~~~~--~iPvV~~----~~~~~~~~~~~~V~~D~~-~~g~~a~~ 119 (325)
T 2x7x_A 49 SKQAEDVHYFMDEGVDLLIISANEAAP--MTPIVEEAYQK--GIPVILV----DRKILSDKYTAYIGADNY-EIGRSVGN 119 (325)
T ss_dssp HHHHHHHHHHHHTTCSEEEECCSSHHH--HHHHHHHHHHT--TCCEEEE----SSCCSSSCSSEEEEECHH-HHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCHHH--HHHHHHHHHHC--CCeEEEe----CCCCCCcceeEEEecCHH-HHHHHHHH
Confidence 123466778888999999999766432 11222444444 4667765 3333321 234555532 12222333
Q ss_pred HHHHhhhhcCCcEEEEE
Q 042534 236 AAHVEAESAVNGIGLVK 252 (447)
Q Consensus 236 ~i~~~A~S~~~~v~iVe 252 (447)
.+...... +++|.++-
T Consensus 120 ~L~~~~~G-~~~I~~i~ 135 (325)
T 2x7x_A 120 YIASSLKG-KGNIVELT 135 (325)
T ss_dssp HHHHHTTT-EEEEEEEE
T ss_pred HHHHHcCC-CceEEEEE
Confidence 33322224 56788874
No 135
>2pn1_A Carbamoylphosphate synthase large subunit; ZP_00538348.1, ATP-grAsp domain, carbamoylphosphate synthase subunit (split gene in MJ); 2.00A {Exiguobacterium sibiricum}
Probab=29.26 E-value=3e+02 Score=25.62 Aligned_cols=44 Identities=11% Similarity=0.055 Sum_probs=26.1
Q ss_pred cHHHHHHHHHHcCCCEEEEecCCCcHHHHHHHHHHHHHcCCcceEee
Q 042534 159 DLHQIVDAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVG 205 (447)
Q Consensus 159 ~~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVg 205 (447)
..+.+.+.++++++|.++. +-+.....+..+.+.+++.| +++++
T Consensus 60 ~~~~l~~~~~~~~~d~vi~-~~~~~~~~~a~~~~~l~~~g--~~~~~ 103 (331)
T 2pn1_A 60 YIDHLLTLCQDEGVTALLT-LIDPELGLLAQATERFQAIG--VTVIV 103 (331)
T ss_dssp HHHHHHHHHHHHTCCEEEE-SSHHHHHHHHHTHHHHHTTT--CEECC
T ss_pred HHHHHHHHHHHcCCCEEEe-CCchhHHHHHHHHHHHHhCC--cEEec
Confidence 3688888889999998765 33333333344555555433 44444
No 136
>3dzc_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, in diseases, isomerase, center for structural genomics of INFE diseases, csgid; 2.35A {Vibrio cholerae}
Probab=29.25 E-value=37 Score=33.61 Aligned_cols=42 Identities=12% Similarity=0.146 Sum_probs=29.0
Q ss_pred HHHHHHHHHHcCCCEEEEecCCCc-HHHHHHHHHHHHHcCCcceEeeec
Q 042534 160 LHQIVDAIQTNAFNQVYIIGGDGT-MRGAVEIFDEIQRRKINVGVVGIP 207 (447)
Q Consensus 160 ~~~iv~~l~~~~Id~L~vIGGdgS-~~~A~~L~~~~~~~~~~i~VVgIP 207 (447)
+.++.+.|++.+-|.+++.|+-.+ +.++. .+ +..+|+|+.+=
T Consensus 100 ~~~l~~~l~~~kPDvVi~~g~~~~~~~~~~-aa-----~~~~IPv~h~~ 142 (396)
T 3dzc_A 100 LLGMQQVLSSEQPDVVLVHGDTATTFAASL-AA-----YYQQIPVGHVE 142 (396)
T ss_dssp HHHHHHHHHHHCCSEEEEETTSHHHHHHHH-HH-----HTTTCCEEEET
T ss_pred HHHHHHHHHhcCCCEEEEECCchhHHHHHH-HH-----HHhCCCEEEEE
Confidence 577888899999999999997665 33332 22 12467777663
No 137
>1wdp_A Beta-amylase; (beta/alpha)8 barrel, hydrolase; 1.27A {Glycine max} SCOP: c.1.8.1 PDB: 1bfn_A* 1q6c_A 1wdr_A* 1v3i_A* 1v3h_A* 1q6d_A* 1q6g_A* 1wdq_A* 1wds_A* 1q6e_A* 1q6f_A* 2dqx_A 1byb_A* 1bya_A* 1byc_A* 1byd_A* 1uko_A 1ukp_A 1btc_A*
Probab=28.78 E-value=2.1e+02 Score=29.73 Aligned_cols=85 Identities=16% Similarity=0.282 Sum_probs=66.7
Q ss_pred HHHHHHHHHHcCCCEEEEe--------cCCC--cHHHHHHHHHHHHHcCCcceEe--------------e--ecccc---
Q 042534 160 LHQIVDAIQTNAFNQVYII--------GGDG--TMRGAVEIFDEIQRRKINVGVV--------------G--IPKTV--- 210 (447)
Q Consensus 160 ~~~iv~~l~~~~Id~L~vI--------GGdg--S~~~A~~L~~~~~~~~~~i~VV--------------g--IPkTI--- 210 (447)
++.=++.||..|++++.+= -|.+ --.+=.+|++.+++.|+++.+| . +|+-+
T Consensus 35 l~~~L~~LK~~GVdGVmvDVWWGiVE~~~P~~YdWsgY~~l~~mv~~~GLKlq~vmSFHqCGgNVGD~~~IPLP~WV~~~ 114 (495)
T 1wdp_A 35 LKEQLLQLRAAGVDGVMVDVWWGIIELKGPKQYDWRAYRSLLQLVQECGLTLQAIMSFHQCGGNVGDIVNIPIPQWVLDI 114 (495)
T ss_dssp HHHHHHHHHHTTCCEEEEEEEHHHHTCSSTTCCCCHHHHHHHHHHHHTTCEEEEEEECSCBCCSTTCSCCBCSCHHHHHH
T ss_pred HHHHHHHHHHcCCCEEEEEeEeeeeccCCCCccCcHHHHHHHHHHHHcCCeEEEEEEeeecCCCCCCcccccCCHHHHHh
Confidence 5666888999999999872 2344 3566788999999999999887 3 45443
Q ss_pred ---cccccCcCc---------ccChh--------hHHHHHHHHHHHHHHhhhhc
Q 042534 211 ---DNDVGIIDR---------SFGFQ--------TAVEMAQQAISAAHVEAESA 244 (447)
Q Consensus 211 ---DNDi~~tD~---------s~GFd--------TAv~~~~~ai~~i~~~A~S~ 244 (447)
|.||.+||+ |+|.| |+++...+...+.+.+-.+.
T Consensus 115 ~~~~pDi~ftDr~G~rn~EyLSlg~D~~pvl~GRTpiq~Y~Dfm~SFr~~F~~~ 168 (495)
T 1wdp_A 115 GESNHDIFYTNRSGTRNKEYLTVGVDNEPIFHGRTAIEIYSDYMKSFRENMSDF 168 (495)
T ss_dssp HHHCGGGEEECTTCCEEEEEECGGGTTCCCBTTBCHHHHHHHHHHHHHHHTHHH
T ss_pred hccCCCcEEECCCCCccccccccccccccccCCCCHHHHHHHHHHHHHHHHHHh
Confidence 459999985 88888 88999999999999887763
No 138
>3s99_A Basic membrane lipoprotein; ssgcid, structural genomics, SEA structural genomics center for infectious disease, adenine; HET: ADE; 2.05A {Brucella melitensis biovar abortus}
Probab=28.16 E-value=2e+02 Score=28.09 Aligned_cols=98 Identities=17% Similarity=0.188 Sum_probs=50.3
Q ss_pred ecCCccccccCCCCceEEEEccCCCC-ccHHHHHHHHHHHHHHhcC--CeEEEEEcccccccccCCCCeEECChhhhhch
Q 042534 67 RAGPRKQIFFEPKNTRAAIVTCGGLC-PGLNTVIRELVVGLWELYG--VRQILGIQAGYRGFYSTTRNPLVLNPKMVRGW 143 (447)
Q Consensus 67 ~agpr~~~~f~p~~~kiaIvtsGG~~-PGlN~vIr~vv~~~~~~~~--~~~V~Gi~~G~~GL~~~~~~~~~L~~~~v~~i 143 (447)
.+||.. ...+..|||+|+.|+.. -+-|..+..=+..+.+.+| + ++. +
T Consensus 16 ~~g~~~---~~~~~~kIglv~~g~i~D~~f~~~~~~G~~~~~~~~G~~~-~~~---------------~----------- 65 (356)
T 3s99_A 16 TQGPGS---MAEEKLKVGFIYIGPPGDFGWTYQHDQARKELVEALGDKV-ETT---------------F----------- 65 (356)
T ss_dssp -------------CEEEEEECSSCGGGSSHHHHHHHHHHHHHHHHTTTE-EEE---------------E-----------
T ss_pred cCCccc---ccCCCCEEEEEEccCCCchhHHHHHHHHHHHHHHHhCCce-EEE---------------E-----------
Confidence 455544 35567899999988754 4777765544444445555 3 111 0
Q ss_pred hccCCccccccCCcccHHHHHHHHHHcCCCEEEEecCCCcHHHHHHHHHHHHHcCCcceEeee
Q 042534 144 HKLGGTVLETSRGGFDLHQIVDAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGI 206 (447)
Q Consensus 144 ~~~GGt~LGssR~~~~~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVgI 206 (447)
+-+.....+.++.++.|.+.+.|.+|..| ..-.....++++ +.. +++++.+
T Consensus 66 -------~e~~~~~~d~~~~l~~l~~~g~d~Ii~~g-~~~~~~~~~vA~---~~P-dv~fv~i 116 (356)
T 3s99_A 66 -------LENVAEGADAERSIKRIARAGNKLIFTTS-FGYMDPTVKVAK---KFP-DVKFEHA 116 (356)
T ss_dssp -------ECSCCTTHHHHHHHHHHHHTTCSEEEECS-GGGHHHHHHHHT---TCT-TSEEEEE
T ss_pred -------EecCCCHHHHHHHHHHHHHCCCCEEEECC-HHHHHHHHHHHH---HCC-CCEEEEE
Confidence 11111123567888999999999666654 443333333332 222 5677765
No 139
>3lp6_A Phosphoribosylaminoimidazole carboxylase catalyti; alpha and beta protein, structural genomics, PSI-2, protein initiative; 1.70A {Mycobacterium tuberculosis} SCOP: c.23.8.0
Probab=27.55 E-value=74 Score=28.62 Aligned_cols=53 Identities=13% Similarity=0.253 Sum_probs=36.1
Q ss_pred ccccCCcccHHHHHHHHHHcCCCEEEEec-CCCcHHHHHHHHHHHHHcCCcceEeeecccc
Q 042534 151 LETSRGGFDLHQIVDAIQTNAFNQVYIIG-GDGTMRGAVEIFDEIQRRKINVGVVGIPKTV 210 (447)
Q Consensus 151 LGssR~~~~~~~iv~~l~~~~Id~L~vIG-GdgS~~~A~~L~~~~~~~~~~i~VVgIPkTI 210 (447)
.+--|....+.+++++.++.+++.+|++- +.+.+-+.. +-. ...+|||||-..
T Consensus 42 ~SaHR~p~~~~~~~~~a~~~g~~ViIa~AG~aa~Lpgvv--A~~-----t~~PVIgVP~~~ 95 (174)
T 3lp6_A 42 VSAHRTPEAMFSYARGAAARGLEVIIAGAGGAAHLPGMV--AAA-----TPLPVIGVPVPL 95 (174)
T ss_dssp CCTTTCHHHHHHHHHHHHHHTCCEEEEEEESSCCHHHHH--HHH-----CSSCEEEEEECC
T ss_pred ECCCCCHHHHHHHHHHHHhCCCCEEEEecCchhhhHHHH--Hhc-----cCCCEEEeeCCC
Confidence 33446666688899999999999777664 455555543 221 468999999653
No 140
>1cz3_A Dihydrofolate reductase; dimer, hyperthermophIle, oxidoreductase; 2.10A {Thermotoga maritima} SCOP: c.71.1.1 PDB: 1d1g_A*
Probab=27.24 E-value=27 Score=30.36 Aligned_cols=48 Identities=17% Similarity=0.282 Sum_probs=36.8
Q ss_pred ccHHHHHHHHHHcCCCEEEEecCCCcHHHHHH--HHHHHHHcCCcceEeeecccccc
Q 042534 158 FDLHQIVDAIQTNAFNQVYIIGGDGTMRGAVE--IFDEIQRRKINVGVVGIPKTVDN 212 (447)
Q Consensus 158 ~~~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~--L~~~~~~~~~~i~VVgIPkTIDN 212 (447)
.+++++++.|++.+++-++|+||-..++.+.. |.+ ++.+.-+|+.+-+
T Consensus 80 ~~l~~~l~~l~~~~~~~i~v~GG~~l~~~~l~~~lvD-------el~l~~~p~~lG~ 129 (168)
T 1cz3_A 80 GSPADVVKFLEGKGYERVAVIGGKTVFTEFLREKLVD-------ELFVTVEPYVFGK 129 (168)
T ss_dssp SCHHHHHHHHHHTTCSEEEEEECHHHHHHHHHTTCCS-------EEEEEECSEEESS
T ss_pred CCHHHHHHHHHhCCCCEEEEECCHHHHHHHHhCCCCC-------EEEEEEeceecCC
Confidence 37899999999999999999999765555444 332 5778888988754
No 141
>1usg_A Leucine-specific binding protein; leucine-binding protein, X-RAY crystallography, protein structure, ABC transport systems, transport protein; 1.53A {Escherichia coli} SCOP: c.93.1.1 PDB: 1usi_A* 1usk_A 2lbp_A 1z15_A 1z16_A 1z17_A 1z18_A 2liv_A
Probab=27.18 E-value=1e+02 Score=28.71 Aligned_cols=102 Identities=13% Similarity=0.107 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHHHhcCCeEEEEEcccccccccCCCCeEECChhhhhchhccCCcccccc---CCcccHHHHHHHHHHcC
Q 042534 95 LNTVIRELVVGLWELYGVRQILGIQAGYRGFYSTTRNPLVLNPKMVRGWHKLGGTVLETS---RGGFDLHQIVDAIQTNA 171 (447)
Q Consensus 95 lN~vIr~vv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~~~L~~~~v~~i~~~GGt~LGss---R~~~~~~~iv~~l~~~~ 171 (447)
-+...+.+++.+.+++|+++|.-+..... +. ........+.+...|+.+.... .+..+...+++.|++.+
T Consensus 121 ~~~~~~~~~~~l~~~~g~~~i~~i~~~~~--~~-----~~~~~~~~~~l~~~g~~v~~~~~~~~~~~d~~~~~~~l~~~~ 193 (346)
T 1usg_A 121 DSSQGPTAAKYILETVKPQRIAIIHDKQQ--YG-----EGLARSVQDGLKAANANVVFFDGITAGEKDFSALIARLKKEN 193 (346)
T ss_dssp GGGHHHHHHHHHHHTTCCSSEEEEECSSH--HH-----HHHHHHHHHHHHHTTCCEEEEEECCTTCCCCHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHhcCCCeEEEEECCCc--hH-----HHHHHHHHHHHHHcCCEEEEEeccCCCCcCHHHHHHHHHhcC
Confidence 34445666776654456655554432100 00 0000111223334555554322 12245667888888889
Q ss_pred CCEEEEecCCCcHHHHHHHHHHHHHcCCcceEeee
Q 042534 172 FNQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGI 206 (447)
Q Consensus 172 Id~L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVgI 206 (447)
.|++|+.+-+. .|..+.+.+++.|+++++++.
T Consensus 194 ~d~i~~~~~~~---~a~~~~~~~~~~g~~~~~~~~ 225 (346)
T 1usg_A 194 IDFVYYGGYYP---EMGQMLRQARSVGLKTQFMGP 225 (346)
T ss_dssp CCEEEEESCHH---HHHHHHHHHHHTTCCCEEEEC
T ss_pred CCEEEEcCcch---HHHHHHHHHHHcCCCCeEEec
Confidence 99998876322 234456777788888877664
No 142
>1mgp_A Hypothetical protein TM841; two domain structure with mixed alpha/beta structures in BOTH domains, structural genomics; HET: PLM; 2.00A {Thermotoga maritima} SCOP: c.119.1.1 PDB: 1vpv_A*
Probab=26.90 E-value=57 Score=31.82 Aligned_cols=137 Identities=17% Similarity=0.151 Sum_probs=72.4
Q ss_pred ccccccCCCCceEEEEc-cCCCCccHHHHHHHHHHHHHHhcCCeEEEEEccccccc--ccCCCCeEECChhhhhchhccC
Q 042534 71 RKQIFFEPKNTRAAIVT-CGGLCPGLNTVIRELVVGLWELYGVRQILGIQAGYRGF--YSTTRNPLVLNPKMVRGWHKLG 147 (447)
Q Consensus 71 r~~~~f~p~~~kiaIvt-sGG~~PGlN~vIr~vv~~~~~~~~~~~V~Gi~~G~~GL--~~~~~~~~~L~~~~v~~i~~~G 147 (447)
-+++||+-.+ |++||| |.-+-|- ...+.|++ .|+-+.-=+.|= +.+. .++++++.+-.....+
T Consensus 17 ~~~~~~~~~M-ki~IvtDSt~dL~~----------e~~~~~~I-~vvPL~v~~~~~~~Y~D~--~~di~~~efy~~m~~~ 82 (313)
T 1mgp_A 17 TENLYFQGHM-KVKILVDSTADVPF----------SWMEKYDI-DSIPLYVVWEDGRSEPDE--REPEEIMNFYKRIREA 82 (313)
T ss_dssp --------CC-CEEEEEEGGGCCCT----------THHHHTTE-EEECCEEECTTSCEEECC--CCHHHHHHHHHHHHHC
T ss_pred hhhhhhcCCC-CEEEEEECCCCCCH----------HHHHhCCe-EEEEEEEEECCEEEEeCC--CcCCCHHHHHHHHHhC
Confidence 3567777655 999999 6555543 11245775 443332112221 1111 1457777777777776
Q ss_pred CccccccCCc-ccHHHHHHHHHHcCCCEEEEecC----CCcHHHHHHHHHHHHHcCCcceEeeecccccccccCcCcccC
Q 042534 148 GTVLETSRGG-FDLHQIVDAIQTNAFNQVYIIGG----DGTMRGAVEIFDEIQRRKINVGVVGIPKTVDNDVGIIDRSFG 222 (447)
Q Consensus 148 Gt~LGssR~~-~~~~~iv~~l~~~~Id~L~vIGG----dgS~~~A~~L~~~~~~~~~~i~VVgIPkTIDNDi~~tD~s~G 222 (447)
..+-.||--. .++.++.+.+.+.+-+.+++|.= -||+..|...++++ +.+|.|| |.- --|.|
T Consensus 83 ~~~pkTSqPs~~~~~e~f~~l~~~g~d~Ii~I~iSs~LSGTy~sA~~Aa~~~---~~~I~Vi------DS~----~~s~g 149 (313)
T 1mgp_A 83 GSVPKTSQPSVEDFKKRYLKYKEEDYDVVLVLTLSSKLSGTYNSAVLASKEV---DIPVYVV------DTL----LASGA 149 (313)
T ss_dssp SSCCEEECCCHHHHHHHHHHHHHTTCSEEEEEESCTTTCSHHHHHHHHHHHS---SSCEEEE------ECS----CCGGG
T ss_pred CCCcccCCcCHHHHHHHHHHHHHcCCCeEEEEECCccHhHHHHHHHHHHhcC---CCeEEEE------eCC----cchHH
Confidence 6565677633 35677777777778887888744 67777777666542 1233332 211 13566
Q ss_pred hhhHHHHHHHHH
Q 042534 223 FQTAVEMAQQAI 234 (447)
Q Consensus 223 FdTAv~~~~~ai 234 (447)
..-.+..|++.+
T Consensus 150 ~g~lv~~Aa~l~ 161 (313)
T 1mgp_A 150 IPLPARVAREML 161 (313)
T ss_dssp THHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 665666665544
No 143
>3snr_A Extracellular ligand-binding receptor; structural genomics, APC102214, PSI-biology, midwest center structural genomics, MCSG; HET: MSE TYR PHE; 1.49A {Rhodopseudomonas palustris} PDB: 3uk0_A* 3t23_A* 3ukj_A* 4eyo_A* 4eyq_A* 3tx6_A* 4f8j_A* 4fb4_A*
Probab=26.11 E-value=1.1e+02 Score=28.55 Aligned_cols=103 Identities=8% Similarity=-0.037 Sum_probs=58.7
Q ss_pred CccHHHHHHHHHHHHHHhcCCeEEEEEcccccccccCCCCe-EECChhhhhchhccCCccccccC---CcccHHHHHHHH
Q 042534 92 CPGLNTVIRELVVGLWELYGVRQILGIQAGYRGFYSTTRNP-LVLNPKMVRGWHKLGGTVLETSR---GGFDLHQIVDAI 167 (447)
Q Consensus 92 ~PGlN~vIr~vv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~-~~L~~~~v~~i~~~GGt~LGssR---~~~~~~~iv~~l 167 (447)
+|--....+.+++.+. ..|+++|.-+... .. + ........+.+...|+.+..... +..+....+..+
T Consensus 116 ~~~~~~~~~~~~~~l~-~~g~~~ia~i~~~------~~--~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~l 186 (362)
T 3snr_A 116 PQPIPIMGKVLYEHMK-KNNVKTVGYIGYS------DS--YGDLWFNDLKKQGEAMGLKIVGEERFARPDTSVAGQALKL 186 (362)
T ss_dssp SCCHHHHHHHHHHHHH-HTTCCEEEEEEES------SH--HHHHHHHHHHHHHHHTTCEEEEEEEECTTCSCCHHHHHHH
T ss_pred CCChHHHHHHHHHHHH-hcCCCEEEEEecC------ch--HHHHHHHHHHHHHHHcCCEEEEEeecCCCCCCHHHHHHHH
Confidence 3444566777777775 4677666655211 10 0 00011112334455665543322 234667788888
Q ss_pred HHcCCCEEEEecCCCcHHHHHHHHHHHHHcCCcceEeee
Q 042534 168 QTNAFNQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGI 206 (447)
Q Consensus 168 ~~~~Id~L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVgI 206 (447)
++.+.|++|+.+-+. .|..+.+.+++.|++++++++
T Consensus 187 ~~~~~dav~~~~~~~---~a~~~~~~~~~~g~~~p~i~~ 222 (362)
T 3snr_A 187 VAANPDAILVGASGT---AAALPQTTLRERGYNGLIYQT 222 (362)
T ss_dssp HHHCCSEEEEECCHH---HHHHHHHHHHHTTCCSEEEEC
T ss_pred HhcCCCEEEEecCcc---hHHHHHHHHHHcCCCccEEec
Confidence 889999998876332 344556777888988776654
No 144
>3mjf_A Phosphoribosylamine--glycine ligase; structural genomics, CEN structural genomics of infectious diseases, csgid; HET: MSE PGE; 1.47A {Yersinia pestis} PDB: 1gso_A
Probab=25.76 E-value=55 Score=32.93 Aligned_cols=89 Identities=12% Similarity=0.141 Sum_probs=45.7
Q ss_pred CCceEEEEccCCCCccHHHHHHHHHHHHHHhcCCeEEEEEcccccccccCCC-CeEECChhhhhchhccCCccccccCCc
Q 042534 79 KNTRAAIVTCGGLCPGLNTVIRELVVGLWELYGVRQILGIQAGYRGFYSTTR-NPLVLNPKMVRGWHKLGGTVLETSRGG 157 (447)
Q Consensus 79 ~~~kiaIvtsGG~~PGlN~vIr~vv~~~~~~~~~~~V~Gi~~G~~GL~~~~~-~~~~L~~~~v~~i~~~GGt~LGssR~~ 157 (447)
.++||.||-+||- - .+++..+.+..++.+||-. .|-.|...... ..+.++ .
T Consensus 2 ~~mkvlviG~ggr---e----~ala~~l~~s~~v~~v~~~-pgn~g~~~~~~~~~~~~~--------------------~ 53 (431)
T 3mjf_A 2 NAMNILIIGNGGR---E----HALGWKAAQSPLADKIYVA-PGNAGTALEPTLENVDIA--------------------A 53 (431)
T ss_dssp -CEEEEEEECSHH---H----HHHHHHHTTCTTEEEEEEE-ECCHHHHHCTTCEECCCC--------------------T
T ss_pred CCcEEEEECCCHH---H----HHHHHHHHhCCCCCEEEEE-CCCHHHhhhcccceecCC--------------------c
Confidence 3689999988862 1 2455555555566678776 34444332110 001111 1
Q ss_pred ccHHHHHHHHHHcCCCEEEEecCCCcHHHHHHHHHHHHHcC
Q 042534 158 FDLHQIVDAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQRRK 198 (447)
Q Consensus 158 ~~~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~~~~~~~~ 198 (447)
.|.+.+++.++++++|.+++ |.+..+ +..+++.+++.|
T Consensus 54 ~d~~~l~~~a~~~~id~vv~-g~e~~l--~~~~~~~l~~~G 91 (431)
T 3mjf_A 54 TDIAGLLAFAQSHDIGLTIV-GPEAPL--VIGVVDAFRAAG 91 (431)
T ss_dssp TCHHHHHHHHHHTTEEEEEE-CSHHHH--HTTHHHHHHHTT
T ss_pred CCHHHHHHHHHHhCcCEEEE-CCchHH--HHHHHHHHHhcC
Confidence 35677777777777775544 433222 123445554443
No 145
>4fle_A Esterase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, alpha-beta protein, rossmann fold, HY; 2.10A {Yersinia enterocolitica subsp}
Probab=25.57 E-value=2.7e+02 Score=23.34 Aligned_cols=86 Identities=17% Similarity=0.137 Sum_probs=46.2
Q ss_pred EEEecCCC-cHH--HHHHHHHHHHHcCCcceEeeecccccccccCcCcccChhhHHHHHHHHHHHHHHhhhhcCCcEEEE
Q 042534 175 VYIIGGDG-TMR--GAVEIFDEIQRRKINVGVVGIPKTVDNDVGIIDRSFGFQTAVEMAQQAISAAHVEAESAVNGIGLV 251 (447)
Q Consensus 175 L~vIGGdg-S~~--~A~~L~~~~~~~~~~i~VVgIPkTIDNDi~~tD~s~GFdTAv~~~~~ai~~i~~~A~S~~~~v~iV 251 (447)
++++=|.+ |.. -+..|.+++++.+..+.|+.. |+++- | .++++.+...+.. .. .+++.++
T Consensus 5 Il~lHGf~ss~~s~k~~~l~~~~~~~~~~~~v~~p------dl~~~----g-~~~~~~l~~~~~~----~~--~~~i~l~ 67 (202)
T 4fle_A 5 LLYIHGFNSSPSSAKATTFKSWLQQHHPHIEMQIP------QLPPY----P-AEAAEMLESIVMD----KA--GQSIGIV 67 (202)
T ss_dssp EEEECCTTCCTTCHHHHHHHHHHHHHCTTSEEECC------CCCSS----H-HHHHHHHHHHHHH----HT--TSCEEEE
T ss_pred EEEeCCCCCCCCccHHHHHHHHHHHcCCCcEEEEe------CCCCC----H-HHHHHHHHHHHHh----cC--CCcEEEE
Confidence 55666643 332 356788888888877777632 44432 2 2344433333322 22 3456543
Q ss_pred EecCCcc-chHHHHHhhccCCccEEecCCC
Q 042534 252 KLMGRST-GHIALHATLSSRDVDCCLIPEM 280 (447)
Q Consensus 252 evMGR~s-G~lAl~aaLA~~~ad~ilIPE~ 280 (447)
|++- |++|+..|......-.++++..
T Consensus 68 ---G~SmGG~~a~~~a~~~~~~~~~~~~~~ 94 (202)
T 4fle_A 68 ---GSSLGGYFATWLSQRFSIPAVVVNPAV 94 (202)
T ss_dssp ---EETHHHHHHHHHHHHTTCCEEEESCCS
T ss_pred ---EEChhhHHHHHHHHHhcccchheeecc
Confidence 5544 6788877766554445555544
No 146
>3mel_A Thiamin pyrophosphokinase family protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium; HET: TPP; 2.79A {Enterococcus faecalis}
Probab=25.02 E-value=64 Score=29.83 Aligned_cols=98 Identities=15% Similarity=0.130 Sum_probs=59.9
Q ss_pred EEEccCCCCccHHHHHHHHHHHHHHhcCCeEEEEEcccccccccCC--CC-----eEECChhhhhchhccCCccccccCC
Q 042534 84 AIVTCGGLCPGLNTVIRELVVGLWELYGVRQILGIQAGYRGFYSTT--RN-----PLVLNPKMVRGWHKLGGTVLETSRG 156 (447)
Q Consensus 84 aIvtsGG~~PGlN~vIr~vv~~~~~~~~~~~V~Gi~~G~~GL~~~~--~~-----~~~L~~~~v~~i~~~GGt~LGssR~ 156 (447)
+++.+||+.|-.... +.+.+ .-++|+-.|..=|++.. .+ +-.++++..+.+...|=.++--...
T Consensus 4 ~~I~~gG~~~~~~~~-------~~~~~--~~~I~aDgGa~~l~~~g~~Pd~ivGDfDSi~~~~~~~~~~~~~~~~~~~~e 74 (222)
T 3mel_A 4 VLLVAGGNPSDWPTI-------EPATY--DYFVGIDRGCLHLLEADLPLQLAVGDFDSLSREEYHFVQETTETLIQAPAE 74 (222)
T ss_dssp EEEECSSCGGGCCCC-------CGGGC--SCEEEETTHHHHHHTTTCCCCEEEECCTTSCTTHHHHHHHHCSSEEECCSS
T ss_pred EEEEECCCCccchhH-------HhhcC--CEEEEEcHHHHHHHHCCCCCCEEEeCcccCCHHHHHHHHhcCCcEEECCcc
Confidence 455668887632210 11222 35899999988877643 11 2225666666666655333321222
Q ss_pred --cccHHHHHHHHHHcCCC-EEEEecCCCcHHHHHHHH
Q 042534 157 --GFDLHQIVDAIQTNAFN-QVYIIGGDGTMRGAVEIF 191 (447)
Q Consensus 157 --~~~~~~iv~~l~~~~Id-~L~vIGGdgS~~~A~~L~ 191 (447)
.-|.+++++.+.+++-+ -++++|+-|. |-=+.|+
T Consensus 75 KD~TD~e~Al~~~~~~~~~~~I~i~Ga~Gg-RlDH~la 111 (222)
T 3mel_A 75 KDDTDTQLALQEALQRFPQAEMTIIGATGG-RIDHLLA 111 (222)
T ss_dssp CSSCHHHHHHHHHHHHCTTSEEEEECCCSS-CHHHHHH
T ss_pred CCCCHHHHHHHHHHHhCCCceEEEEccCCC-CHHHHHH
Confidence 24789999999999987 9999999997 3334443
No 147
>3hut_A Putative branched-chain amino acid ABC transporter; extracellular ligand-binding receptor,transport protein; 1.93A {Rhodospirillum rubrum atcc 11170}
Probab=24.29 E-value=97 Score=29.08 Aligned_cols=104 Identities=15% Similarity=0.172 Sum_probs=57.2
Q ss_pred ccHHHHHHHHHHHHHHhcCCeEEEEEcccccccccCCCCeEECChhhhhchhccCCccccccC---CcccHHHHHHHHHH
Q 042534 93 PGLNTVIRELVVGLWELYGVRQILGIQAGYRGFYSTTRNPLVLNPKMVRGWHKLGGTVLETSR---GGFDLHQIVDAIQT 169 (447)
Q Consensus 93 PGlN~vIr~vv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~~~L~~~~v~~i~~~GGt~LGssR---~~~~~~~iv~~l~~ 169 (447)
|--....+.+++.+.+ .|+++|.-+.. +.. .-...-....+.+...|+.+..... +..+....++.+++
T Consensus 121 ~~~~~~~~~~~~~l~~-~g~~~ia~i~~------~~~-~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~l~~ 192 (358)
T 3hut_A 121 TTPAFEGPNNAAWMIG-DGFTSVAVIGV------TTD-WGLSSAQAFRKAFELRGGAVVVNEEVPPGNRRFDDVIDEIED 192 (358)
T ss_dssp CCGGGHHHHHHHHHHH-TTCCEEEEEEE------SSH-HHHHHHHHHHHHHHHTTCEEEEEEEECTTCCCCHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHH-cCCCEEEEEec------CcH-HHHHHHHHHHHHHHHcCCEEEEEEecCCCCccHHHHHHHHHh
Confidence 3334456667777654 37666655421 110 0000011112234445665544322 23467778888888
Q ss_pred cCCCEEEEecCCCcHHHHHHHHHHHHHcCCcceEeeec
Q 042534 170 NAFNQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGIP 207 (447)
Q Consensus 170 ~~Id~L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVgIP 207 (447)
.+.+++|+.+ ++ ..|..+.+.+++.|+++++++..
T Consensus 193 ~~~d~i~~~~-~~--~~a~~~~~~~~~~g~~~p~~~~~ 227 (358)
T 3hut_A 193 EAPQAIYLAM-AY--EDAAPFLRALRARGSALPVYGSS 227 (358)
T ss_dssp HCCSEEEEES-CH--HHHHHHHHHHHHTTCCCCEEECG
T ss_pred cCCCEEEEcc-Cc--hHHHHHHHHHHHcCCCCcEEecC
Confidence 9999888764 33 23445567778889888777643
No 148
>3nkl_A UDP-D-quinovosamine 4-dehydrogenase; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; HET: MSE GOL; 1.90A {Vibrio fischeri}
Probab=24.09 E-value=91 Score=25.45 Aligned_cols=45 Identities=13% Similarity=0.241 Sum_probs=33.3
Q ss_pred HHHHHHHHcCCCEEEEecCCCcHHHHHHHHHHHHHcCCcceEeeecc
Q 042534 162 QIVDAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGIPK 208 (447)
Q Consensus 162 ~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVgIPk 208 (447)
.+.+.+++++++.+++--++.+......+.+.+.+.|+ .|.-+|-
T Consensus 56 ~l~~~~~~~~id~viia~~~~~~~~~~~i~~~l~~~gv--~v~~vP~ 100 (141)
T 3nkl_A 56 YLERLIKKHCISTVLLAVPSASQVQKKVIIESLAKLHV--EVLTIPN 100 (141)
T ss_dssp GHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHTTTC--EEEECCC
T ss_pred HHHHHHHHCCCCEEEEeCCCCCHHHHHHHHHHHHHcCC--eEEECCC
Confidence 45666788999998887777676667788888877665 4666674
No 149
>1rcu_A Conserved hypothetical protein VT76; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.50A {Thermotoga maritima} SCOP: c.129.1.1
Probab=23.43 E-value=3e+02 Score=24.81 Aligned_cols=54 Identities=20% Similarity=0.254 Sum_probs=27.9
Q ss_pred ccccccCCCCceEEEEccCCCC-c----cHHHHHHHHHHHHHHhcCCeEEEEEccccccc
Q 042534 71 RKQIFFEPKNTRAAIVTCGGLC-P----GLNTVIRELVVGLWELYGVRQILGIQAGYRGF 125 (447)
Q Consensus 71 r~~~~f~p~~~kiaIvtsGG~~-P----GlN~vIr~vv~~~~~~~~~~~V~Gi~~G~~GL 125 (447)
|+..++.+.+.+|||+.+-..+ | -.-...+.+.+.+. ..|+.-|+|-..|..|.
T Consensus 14 ~~~~~~~~~m~~IaV~Gss~~~~~~~~~~~~~~A~~lg~~LA-~~G~~vVsGg~~GiM~a 72 (195)
T 1rcu_A 14 RENLYFQGHMKKVVVVGYSGPVNKSPVSELRDICLELGRTLA-KKGYLVFNGGRDGVMEL 72 (195)
T ss_dssp ---------CCEEEEEECCSCTTSTTTGGGHHHHHHHHHHHH-HTTCEEEECCSSHHHHH
T ss_pred CCCCcccCCCCeEEEEecCCCCCccccHHHHHHHHHHHHHHH-HCCCEEEeCCHHHHHHH
Confidence 4555555556678888765543 4 34456777887774 56776777644444333
No 150
>1q77_A Hypothetical protein AQ_178; structural genomics, universal stress protein, PSI, protein structure initiative; 2.70A {Aquifex aeolicus} SCOP: c.26.2.4
Probab=23.22 E-value=78 Score=25.43 Aligned_cols=41 Identities=5% Similarity=0.159 Sum_probs=28.3
Q ss_pred HHHHHHHHHHcCCCEEEEecCCCcHHHHHHHHHHHHHcCCcceEeeec
Q 042534 160 LHQIVDAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGIP 207 (447)
Q Consensus 160 ~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVgIP 207 (447)
.+.|++..++.++| |+|+|..|. ..+..+... .+++|.-||
T Consensus 98 ~~~I~~~a~~~~~d-liV~G~~g~-sv~~~vl~~-----a~~PVlvv~ 138 (138)
T 1q77_A 98 SEEVKKFVEGKGYE-LVVWACYPS-AYLCKVIDG-----LNLASLIVK 138 (138)
T ss_dssp HHHHHHHHTTSCCS-EEEECSCCG-GGTHHHHHH-----SSSEEEECC
T ss_pred HHHHHHHHHhcCCC-EEEEeCCCC-chHHHHHHh-----CCCceEeeC
Confidence 57788888888888 777788776 444544432 357777665
No 151
>1nu0_A Hypothetical protein YQGF; structural genomics, structure 2 function project, S2F, unknown function; 1.60A {Escherichia coli} SCOP: c.55.3.8 PDB: 1nmn_A 1ovq_A
Probab=23.13 E-value=51 Score=28.27 Aligned_cols=25 Identities=20% Similarity=0.278 Sum_probs=17.1
Q ss_pred HHHHHHHHcCCcceEeeeccccccc
Q 042534 189 EIFDEIQRRKINVGVVGIPKTVDND 213 (447)
Q Consensus 189 ~L~~~~~~~~~~i~VVgIPkTIDND 213 (447)
.|.+.+++.+...-|||.|+++|+.
T Consensus 44 ~l~~li~e~~v~~iVvGlP~~mdGt 68 (138)
T 1nu0_A 44 IIERLLKEWQPDEIIVGLPLNMDGT 68 (138)
T ss_dssp HHHHHHHHHCCSEEEEEEEECTTSC
T ss_pred HHHHHHHHcCCCEEEEecccCCCcC
Confidence 3444444555566699999999874
No 152
>3lft_A Uncharacterized protein; ABC, ATPase, cassette, L-Trp, PSI, MCSG, structural genomics center for structural genomics; HET: MSE TRP; 1.35A {Streptococcus pneumoniae}
Probab=22.95 E-value=4.3e+02 Score=23.98 Aligned_cols=68 Identities=16% Similarity=0.180 Sum_probs=42.1
Q ss_pred CceEEEEccCCCCccHHHHHHHHHHHHHHhcCCeEEEEEcccccccccCCCCeEECChhhhhchhccCCccccccC-Ccc
Q 042534 80 NTRAAIVTCGGLCPGLNTVIRELVVGLWELYGVRQILGIQAGYRGFYSTTRNPLVLNPKMVRGWHKLGGTVLETSR-GGF 158 (447)
Q Consensus 80 ~~kiaIvtsGG~~PGlN~vIr~vv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~~~L~~~~v~~i~~~GGt~LGssR-~~~ 158 (447)
+.+|||+ ..-.-|-...+++++-..+. .+| |.| .+ +. + ++..+. ...
T Consensus 2 ~~~Igvi-~~~~~p~~~~i~~gi~~~l~-~~g----------y~g---~~--v~-l--------------~~~~~~~~~~ 49 (295)
T 3lft_A 2 NAKIGVL-QFVSHPSLDLIYKGIQDGLA-EEG----------YKD---DQ--VK-I--------------DFMNSEGDQS 49 (295)
T ss_dssp CEEEEEE-ECSCCHHHHHHHHHHHHHHH-HTT----------CCG---GG--EE-E--------------EEEECTTCHH
T ss_pred ceEEEEE-EccCChhHHHHHHHHHHHHH-HcC----------CCC---Cc--eE-E--------------EEecCCCCHH
Confidence 4679998 34556788888999888874 333 321 01 10 0 011122 222
Q ss_pred cHHHHHHHHHHcCCCEEEEec
Q 042534 159 DLHQIVDAIQTNAFNQVYIIG 179 (447)
Q Consensus 159 ~~~~iv~~l~~~~Id~L~vIG 179 (447)
...++++.|.+.++|+++++|
T Consensus 50 ~~~~~~~~l~~~~vDgII~~~ 70 (295)
T 3lft_A 50 KVATMSKQLVANGNDLVVGIA 70 (295)
T ss_dssp HHHHHHHHHTTSSCSEEEEES
T ss_pred HHHHHHHHHHhcCCCEEEECC
Confidence 356788889999999999986
No 153
>2qru_A Uncharacterized protein; alpha/beta-hydrolase, structural GENO PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 1.65A {Enterococcus faecalis}
Probab=22.80 E-value=1.8e+02 Score=26.22 Aligned_cols=42 Identities=21% Similarity=0.282 Sum_probs=33.4
Q ss_pred ChhhHHHHHHHHHHHHHHhhhhcCCcEEEEEecCCcc-chHHHHHhh
Q 042534 222 GFQTAVEMAQQAISAAHVEAESAVNGIGLVKLMGRST-GHIALHATL 267 (447)
Q Consensus 222 GFdTAv~~~~~ai~~i~~~A~S~~~~v~iVevMGR~s-G~lAl~aaL 267 (447)
-|.++++-+.++++.+...+.. .++++ +||-++ |+||+..++
T Consensus 73 ~~p~~~~D~~~al~~l~~~~~~-~~~i~---l~G~SaGG~lA~~~a~ 115 (274)
T 2qru_A 73 KIDHILRTLTETFQLLNEEIIQ-NQSFG---LCGRSAGGYLMLQLTK 115 (274)
T ss_dssp CHHHHHHHHHHHHHHHHHHTTT-TCCEE---EEEETHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHhcccc-CCcEE---EEEECHHHHHHHHHHH
Confidence 7899999999999999877654 45665 567777 699998887
No 154
>3sg0_A Extracellular ligand-binding receptor; structural genomics, PSI-biology; HET: 173; 1.20A {Rhodopseudomonas palustris} PDB: 4dqd_A*
Probab=22.72 E-value=1.1e+02 Score=28.90 Aligned_cols=103 Identities=15% Similarity=0.060 Sum_probs=58.6
Q ss_pred CccHHHHHHHHHHHHHHhcCCeEEEEEcccccccccCCCCe-EECChhhhhchhccCCccccccC---CcccHHHHHHHH
Q 042534 92 CPGLNTVIRELVVGLWELYGVRQILGIQAGYRGFYSTTRNP-LVLNPKMVRGWHKLGGTVLETSR---GGFDLHQIVDAI 167 (447)
Q Consensus 92 ~PGlN~vIr~vv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~-~~L~~~~v~~i~~~GGt~LGssR---~~~~~~~iv~~l 167 (447)
+|--....+.+++.+. ..|+++|.-+... .. + .+......+.+...|+.+..... +..+....+..+
T Consensus 140 ~~~~~~~~~~~~~~l~-~~g~~~ia~i~~~------~~--~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~d~~~~~~~~ 210 (386)
T 3sg0_A 140 VPNDDIMAEAIGKYIA-KTGAKKVGYIGFS------DA--YGEGYYKVLAAAAPKLGFELTTHEVYARSDASVTGQVLKI 210 (386)
T ss_dssp SCCHHHHHHHHHHHHH-HTTCCEEEEEEES------SH--HHHHHHHHHHHHHHHHTCEECCCEEECTTCSCCHHHHHHH
T ss_pred CCCcHHHHHHHHHHHH-hcCCCEEEEEecC------ch--HHHHHHHHHHHHHHHcCCEEEEEEeeCCCCCcHHHHHHHH
Confidence 3445566777887775 4677676655211 11 0 00111122334455666554322 234677888889
Q ss_pred HHcCCCEEEEecCCCcHHHHHHHHHHHHHcCCcceEeee
Q 042534 168 QTNAFNQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGI 206 (447)
Q Consensus 168 ~~~~Id~L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVgI 206 (447)
++.+.|++|+.+- +.. +..+.+.+++.|++.++++.
T Consensus 211 ~~~~~dav~~~~~-~~~--a~~~~~~~~~~g~~~~~~~~ 246 (386)
T 3sg0_A 211 IATKPDAVFIASA-GTP--AVLPQKALRERGFKGAIYQT 246 (386)
T ss_dssp HHTCCSEEEEECC-SGG--GHHHHHHHHHTTCCSEEECC
T ss_pred HhcCCCEEEEecC-cch--HHHHHHHHHHcCCCCcEEec
Confidence 9999999887653 332 33445667788888776654
No 155
>3lm8_A Thiamine pyrophosphokinase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: VIB; 2.60A {Bacillus subtilis}
Probab=22.69 E-value=54 Score=30.35 Aligned_cols=71 Identities=14% Similarity=0.073 Sum_probs=50.0
Q ss_pred eEEEEEcccccccccCC--CC-----eEECChhhhhchhccCCccccccCCc--ccHHHHHHHHHHcCCCEEEEecCCCc
Q 042534 113 RQILGIQAGYRGFYSTT--RN-----PLVLNPKMVRGWHKLGGTVLETSRGG--FDLHQIVDAIQTNAFNQVYIIGGDGT 183 (447)
Q Consensus 113 ~~V~Gi~~G~~GL~~~~--~~-----~~~L~~~~v~~i~~~GGt~LGssR~~--~~~~~iv~~l~~~~Id~L~vIGGdgS 183 (447)
.-++|+-.|..=|++.. .+ +-.++++..+.+...|-.++-....+ -|.+++++.+.+++.+-++++|+-|.
T Consensus 26 ~~~i~~DgGa~~l~~~g~~Pd~ivGDfDSi~~~~~~~~~~~~~~i~~~p~eKD~TD~e~Al~~a~~~g~~~I~i~Ga~Gg 105 (222)
T 3lm8_A 26 TLWIGVDKGTVTLLDAGIIPVEAFGDFDSITEQERRRIEKAAPALHVYQAEKDQTDLDLALDWALEKQPDIIQIFGITGG 105 (222)
T ss_dssp EEEEEETHHHHHHHHHTCCCSEEESCSTTSCHHHHHHHHHHCTTCEEECCCSSSCHHHHHHHHHHHHCCSEEEEESCCCS
T ss_pred CEEEEECHHHHHHHHcCCCCcEEEeCcccCCHHHHHHHHhcCCeEEEeCCCCCCCHHHHHHHHHHHcCCCEEEEEcCCCC
Confidence 46888888887766532 11 22366666666666654455443332 47999999999999999999999997
No 156
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=22.65 E-value=2.6e+02 Score=24.02 Aligned_cols=87 Identities=9% Similarity=0.060 Sum_probs=51.0
Q ss_pred CceEEEEccCCCCccHHHHHHHHHHHHHHhcCCeEEEEEcccccccccCCCCeEECChhh-hhchhccCCccccccCC-c
Q 042534 80 NTRAAIVTCGGLCPGLNTVIRELVVGLWELYGVRQILGIQAGYRGFYSTTRNPLVLNPKM-VRGWHKLGGTVLETSRG-G 157 (447)
Q Consensus 80 ~~kiaIvtsGG~~PGlN~vIr~vv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~~~L~~~~-v~~i~~~GGt~LGssR~-~ 157 (447)
..|+-+.|.||+.--+..-+-+... +..|+ +|+- -+. ..+++. ++.+....--++|.|-. .
T Consensus 18 ~~~vlla~~~gd~HdiG~~~va~~l---~~~G~-eVi~---------lG~----~~p~e~lv~aa~~~~~diV~lS~~~~ 80 (161)
T 2yxb_A 18 RYKVLVAKMGLDGHDRGAKVVARAL---RDAGF-EVVY---------TGL----RQTPEQVAMAAVQEDVDVIGVSILNG 80 (161)
T ss_dssp SCEEEEEEESSSSCCHHHHHHHHHH---HHTTC-EEEC---------CCS----BCCHHHHHHHHHHTTCSEEEEEESSS
T ss_pred CCEEEEEeCCCCccHHHHHHHHHHH---HHCCC-EEEE---------CCC----CCCHHHHHHHHHhcCCCEEEEEeech
Confidence 4678888999998888877666543 45665 4441 111 123433 33344444445554332 2
Q ss_pred ---ccHHHHHHHHHHcCC-CEEEEecCCCc
Q 042534 158 ---FDLHQIVDAIQTNAF-NQVYIIGGDGT 183 (447)
Q Consensus 158 ---~~~~~iv~~l~~~~I-d~L~vIGGdgS 183 (447)
....++++.|++.+. +..+++||--.
T Consensus 81 ~~~~~~~~~i~~L~~~g~~~i~v~vGG~~~ 110 (161)
T 2yxb_A 81 AHLHLMKRLMAKLRELGADDIPVVLGGTIP 110 (161)
T ss_dssp CHHHHHHHHHHHHHHTTCTTSCEEEEECCC
T ss_pred hhHHHHHHHHHHHHhcCCCCCEEEEeCCCc
Confidence 246777888888776 57778887543
No 157
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=22.29 E-value=1.2e+02 Score=28.03 Aligned_cols=53 Identities=13% Similarity=0.135 Sum_probs=34.3
Q ss_pred ccchHHHHHhhccCCccEEecCCCCCCcch--hhhHHHHHHHHHhhCCcEEEEEec
Q 042534 257 STGHIALHATLSSRDVDCCLIPEMEFYLEG--KGGLVEFLDNRLKENGHAVLVVAE 310 (447)
Q Consensus 257 ~sG~lAl~aaLA~~~ad~ilIPE~~f~le~--~~~l~~~i~~r~~~k~~~vIvvaE 310 (447)
.-=-++++.||+.. ++++++=|.--.||- ...+.+.|++..++.+.+||+++-
T Consensus 133 q~qrv~lAraL~~~-p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtH 187 (253)
T 2nq2_C 133 QRQLILIARAIASE-CKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTH 187 (253)
T ss_dssp HHHHHHHHHHHHTT-CSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEES
T ss_pred HHHHHHHHHHHHcC-CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEec
Confidence 33468889999997 999999775434552 334555555433334778888763
No 158
>3auf_A Glycinamide ribonucleotide transformylase 1; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; 2.07A {Symbiobacterium toebii}
Probab=22.13 E-value=3.8e+02 Score=24.62 Aligned_cols=29 Identities=10% Similarity=0.165 Sum_probs=20.6
Q ss_pred HHHHHHHHHcCCCEEEEecCCCcHHHHHHH
Q 042534 161 HQIVDAIQTNAFNQVYIIGGDGTMRGAVEI 190 (447)
Q Consensus 161 ~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L 190 (447)
+++++.|++++.|.+|+. |.+-+-....|
T Consensus 91 ~~~~~~l~~~~~Dliv~a-gy~~IL~~~~l 119 (229)
T 3auf_A 91 AALAERLQAYGVDLVCLA-GYMRLVRGPML 119 (229)
T ss_dssp HHHHHHHHHTTCSEEEES-SCCSCCCHHHH
T ss_pred HHHHHHHHhcCCCEEEEc-ChhHhCCHHHH
Confidence 568899999999966665 56655444444
No 159
>3ihk_A Thiamin pyrophosphokinase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG, SMR83; HET: TPP; 3.00A {Streptococcus mutans}
Probab=22.02 E-value=1.2e+02 Score=27.84 Aligned_cols=79 Identities=10% Similarity=0.070 Sum_probs=51.3
Q ss_pred eEEEEEcccccccccCC--CC-----eEECChhhhhchhccCCccccccCCc--ccHHHHHHHHHHc-CCCEEEEecCCC
Q 042534 113 RQILGIQAGYRGFYSTT--RN-----PLVLNPKMVRGWHKLGGTVLETSRGG--FDLHQIVDAIQTN-AFNQVYIIGGDG 182 (447)
Q Consensus 113 ~~V~Gi~~G~~GL~~~~--~~-----~~~L~~~~v~~i~~~GGt~LGssR~~--~~~~~iv~~l~~~-~Id~L~vIGGdg 182 (447)
.-++|+-.|..=|++.. .+ +-.++++..+.+...|=.++--...+ -|.+++++.+.++ +.+-++++|+-|
T Consensus 20 ~~~i~~DgGa~~l~~~g~~Pd~ivGDfDSi~~~~~~~~~~~~~~i~~~~~eKD~TD~e~Al~~a~~~~~~~~I~i~Ga~G 99 (218)
T 3ihk_A 20 DYFVGIDKGSSFLLKNQLPLDLAIGDFDSVSAEEFKQIKAKAKKLVMAPAEKNDTDTELALKTIFDCFGRVEIIVFGAFG 99 (218)
T ss_dssp SEEEEETHHHHHHHHTTCCCSEEEECCTTSCHHHHHHHHTTCSSEEECCSSCSSCHHHHHHHHHHHHTSSCEEEEESCSS
T ss_pred CEEEEEcHHHHHHHHcCCCCCEEEeCcccCCHHHHHHHHhcCCeEEECCCCCCCCHHHHHHHHHHHhCCCCEEEEECCCC
Confidence 46888888888776643 11 22256666666666543344323322 4789999988877 799999999999
Q ss_pred cHHHHHHHHH
Q 042534 183 TMRGAVEIFD 192 (447)
Q Consensus 183 S~~~A~~L~~ 192 (447)
. |-=+.|+.
T Consensus 100 G-R~DH~lan 108 (218)
T 3ihk_A 100 G-RIDHMLSN 108 (218)
T ss_dssp S-CHHHHHHH
T ss_pred C-chhhHHHH
Confidence 8 44444543
No 160
>2o2g_A Dienelactone hydrolase; YP_324580.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.92A {Anabaena variabilis}
Probab=21.85 E-value=1.5e+02 Score=24.76 Aligned_cols=93 Identities=16% Similarity=0.199 Sum_probs=48.0
Q ss_pred CEEEEecCCCcHH---HHHHHHHHHHHcCCcceEeeecccccccccC--cCcccChhhHHHHHHHHHHHHHHhhhhcCCc
Q 042534 173 NQVYIIGGDGTMR---GAVEIFDEIQRRKINVGVVGIPKTVDNDVGI--IDRSFGFQTAVEMAQQAISAAHVEAESAVNG 247 (447)
Q Consensus 173 d~L~vIGGdgS~~---~A~~L~~~~~~~~~~i~VVgIPkTIDNDi~~--tD~s~GFdTAv~~~~~ai~~i~~~A~S~~~~ 247 (447)
-.++++-|.+... ....+++.+.++|+.+-++-.|..=..+... .+....++..++.+.++++.+........++
T Consensus 36 p~vv~~hG~~~~~~~~~~~~~~~~l~~~G~~v~~~d~~g~g~s~~~~~~~~~~~~~~~~~~d~~~~i~~l~~~~~~~~~~ 115 (223)
T 2o2g_A 36 GIVLFAHGSGSSRYSPRNRYVAEVLQQAGLATLLIDLLTQEEEEIDLRTRHLRFDIGLLASRLVGATDWLTHNPDTQHLK 115 (223)
T ss_dssp EEEEEECCTTCCTTCHHHHHHHHHHHHHTCEEEEECSSCHHHHHHHHHHCSSTTCHHHHHHHHHHHHHHHHHCTTTTTSE
T ss_pred eEEEEecCCCCCCCccchHHHHHHHHHCCCEEEEEcCCCcCCCCccchhhcccCcHHHHHHHHHHHHHHHHhCcCCCCCc
Confidence 3566665555332 2345666666677654444333221111110 1122566677777777777776553322345
Q ss_pred EEEEEecCCcc-chHHHHHhhc
Q 042534 248 IGLVKLMGRST-GHIALHATLS 268 (447)
Q Consensus 248 v~iVevMGR~s-G~lAl~aaLA 268 (447)
++++ |-+. |++|+.++..
T Consensus 116 i~l~---G~S~Gg~~a~~~a~~ 134 (223)
T 2o2g_A 116 VGYF---GASTGGGAALVAAAE 134 (223)
T ss_dssp EEEE---EETHHHHHHHHHHHH
T ss_pred EEEE---EeCccHHHHHHHHHh
Confidence 6544 4444 5677766654
No 161
>3oow_A Phosphoribosylaminoimidazole carboxylase,catalyic; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.75A {Francisella tularensis subsp} SCOP: c.23.8.1 PDB: 3opq_A*
Probab=21.83 E-value=75 Score=28.37 Aligned_cols=87 Identities=11% Similarity=0.190 Sum_probs=51.3
Q ss_pred cccCCcccHHHHHHHHHHcCCCEEEEec-CCCcHHHHHHHHHHHHHcCCcceEeeecccccccccCcCcccChhhHHHHH
Q 042534 152 ETSRGGFDLHQIVDAIQTNAFNQVYIIG-GDGTMRGAVEIFDEIQRRKINVGVVGIPKTVDNDVGIIDRSFGFQTAVEMA 230 (447)
Q Consensus 152 GssR~~~~~~~iv~~l~~~~Id~L~vIG-GdgS~~~A~~L~~~~~~~~~~i~VVgIPkTIDNDi~~tD~s~GFdTAv~~~ 230 (447)
+--|....+.+.++++++.+++.+|++- +.+.+-+.. +- ....+|||||-... ++. |
T Consensus 41 SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~Lpgvv--A~-----~t~~PVIgVP~~~~-~l~------G-------- 98 (166)
T 3oow_A 41 SAHRTPDKMFDYAETAKERGLKVIIAGAGGAAHLPGMV--AA-----KTTLPVLGVPVKSS-TLN------G-------- 98 (166)
T ss_dssp CTTTCHHHHHHHHHHTTTTTCCEEEEEECSSCCHHHHH--HH-----TCSSCEEEEECCCT-TTT------T--------
T ss_pred cCcCCHHHHHHHHHHHHhCCCcEEEEECCcchhhHHHH--Hh-----ccCCCEEEeecCcC-CCC------C--------
Confidence 3346555677788888888898887764 445555443 21 24689999996432 221 2
Q ss_pred HHHHHHHHHhhhhcCC--cEEEEEec---CCccchHHHH
Q 042534 231 QQAISAAHVEAESAVN--GIGLVKLM---GRSTGHIALH 264 (447)
Q Consensus 231 ~~ai~~i~~~A~S~~~--~v~iVevM---GR~sG~lAl~ 264 (447)
++++....++ +. .+..|=+- |.+++++|+.
T Consensus 99 ---~dsLlS~vqm-p~gvpVatV~I~~ag~~nAa~lAa~ 133 (166)
T 3oow_A 99 ---QDSLLSIVQM-PAGIPVATFAIGMAGAKNAALFAAS 133 (166)
T ss_dssp ---HHHHHHHHTC-CTTSCCEECCSTHHHHHHHHHHHHH
T ss_pred ---HHHHHHHhcC-CCCCceEEEecCCccchHHHHHHHH
Confidence 2333334444 44 35555543 6677877754
No 162
>3dnf_A ISPH, LYTB, 4-hydroxy-3-methylbut-2-ENYL diphosphate reductas; trilobal strucure, open alpha/beta, iron, iron-sulfur, isopr biosynthesis; 1.65A {Aquifex aeolicus}
Probab=21.67 E-value=1.2e+02 Score=29.56 Aligned_cols=52 Identities=12% Similarity=0.184 Sum_probs=36.5
Q ss_pred HHHHHHHHHHcCCCEEEEecCCCcHHHHHHHHHHHHHcCCcceEeeeccccccc
Q 042534 160 LHQIVDAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGIPKTVDND 213 (447)
Q Consensus 160 ~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVgIPkTIDND 213 (447)
++..++.|-+ ..|.++||||--|-.+ .+|.+-+++.+.+.-.|-=+.=||-+
T Consensus 199 RQ~av~~la~-~~D~miVVGg~nSSNT-~rL~eia~~~~~~ty~Ie~~~el~~~ 250 (297)
T 3dnf_A 199 RQESVKKLAP-EVDVMIIIGGKNSGNT-RRLYYISKELNPNTYHIETAEELQPE 250 (297)
T ss_dssp HHHHHHHHGG-GSSEEEEESCTTCHHH-HHHHHHHHHHCSSEEEESSGGGCCGG
T ss_pred HHHHHHHHHh-hCCEEEEECCCCCchh-HHHHHHHHhcCCCEEEeCChHHCCHH
Confidence 4566666655 5999999999888665 56888888877654455445556544
No 163
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=21.37 E-value=4.3e+02 Score=23.46 Aligned_cols=125 Identities=11% Similarity=0.017 Sum_probs=73.8
Q ss_pred CCceEEEEccCCCCccHHHHHHHHHHHHHHhcCCeEEEEEcccccccccCCCCeEECChhhhhchhccCCccccccCCcc
Q 042534 79 KNTRAAIVTCGGLCPGLNTVIRELVVGLWELYGVRQILGIQAGYRGFYSTTRNPLVLNPKMVRGWHKLGGTVLETSRGGF 158 (447)
Q Consensus 79 ~~~kiaIvtsGG~~PGlN~vIr~vv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~~~L~~~~v~~i~~~GGt~LGssR~~~ 158 (447)
+..+||+++..-.-|-.+.++.++-+.+. .+|+. +.-+. +.....
T Consensus 6 ~s~~Igvi~~~~~~~~~~~~~~gi~~~~~-~~g~~-~~~~~---------------------------------~~~~~~ 50 (276)
T 3jy6_A 6 SSKLIAVIVANIDDYFSTELFKGISSILE-SRGYI-GVLFD---------------------------------ANADIE 50 (276)
T ss_dssp CCCEEEEEESCTTSHHHHHHHHHHHHHHH-TTTCE-EEEEE---------------------------------CTTCHH
T ss_pred CCcEEEEEeCCCCchHHHHHHHHHHHHHH-HCCCE-EEEEe---------------------------------CCCCHH
Confidence 45679999987778888888999888774 45542 22100 011112
Q ss_pred cHHHHHHHHHHcCCCEEEEecCCCcHHHHHHHHHHHHHcCCcceEeeecccccccccCc-CcccChhh--HHHHHHHHHH
Q 042534 159 DLHQIVDAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGIPKTVDNDVGII-DRSFGFQT--AVEMAQQAIS 235 (447)
Q Consensus 159 ~~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVgIPkTIDNDi~~t-D~s~GFdT--Av~~~~~ai~ 235 (447)
...+.++.+...++|++++.+-+. . ...+.+.+. +++||.+ |++++.. -.++++|- +...+++
T Consensus 51 ~~~~~~~~l~~~~vdgiIi~~~~~-~----~~~~~l~~~--~iPvV~i----~~~~~~~~~~~V~~D~~~~g~~a~~--- 116 (276)
T 3jy6_A 51 REKTLLRAIGSRGFDGLILQSFSN-P----QTVQEILHQ--QMPVVSV----DREMDACPWPQVVTDNFEAAKAATT--- 116 (276)
T ss_dssp HHHHHHHHHHTTTCSEEEEESSCC-H----HHHHHHHTT--SSCEEEE----SCCCTTCSSCEEECCHHHHHHHHHH---
T ss_pred HHHHHHHHHHhCCCCEEEEecCCc-H----HHHHHHHHC--CCCEEEE----ecccCCCCCCEEEEChHHHHHHHHH---
Confidence 245788889999999999999887 2 223334433 5677755 4444322 23455542 3333333
Q ss_pred HHHHhhhhcCCcEEEEEecC
Q 042534 236 AAHVEAESAVNGIGLVKLMG 255 (447)
Q Consensus 236 ~i~~~A~S~~~~v~iVevMG 255 (447)
.+.. .. |++|.++--..
T Consensus 117 ~L~~--~G-~~~I~~i~~~~ 133 (276)
T 3jy6_A 117 AFRQ--QG-YQHVVVLTSEL 133 (276)
T ss_dssp HHHT--TT-CCEEEEEEECS
T ss_pred HHHH--cC-CCeEEEEecCC
Confidence 3322 23 67888885543
No 164
>2omk_A Hypothetical protein; succinimide, thiamin pyrophosphokinase, structural genomics, protein structure initiative; 1.80A {Bacteroides thetaiotaomicron}
Probab=21.28 E-value=4.8e+02 Score=23.96 Aligned_cols=90 Identities=18% Similarity=0.303 Sum_probs=52.4
Q ss_pred EEEccCCCCccHHHHHHHHHHHHHHhcCCeEEEEEcccccccccCC--CCeEE-----CChhhhhchhccCCccccccCC
Q 042534 84 AIVTCGGLCPGLNTVIRELVVGLWELYGVRQILGIQAGYRGFYSTT--RNPLV-----LNPKMVRGWHKLGGTVLETSRG 156 (447)
Q Consensus 84 aIvtsGG~~PGlN~vIr~vv~~~~~~~~~~~V~Gi~~G~~GL~~~~--~~~~~-----L~~~~v~~i~~~GGt~LGssR~ 156 (447)
++|.+||+.|= ....+.+ ++.. .-++|+-.|..=|++.. .+++- ++++..+.+.. .+.-....
T Consensus 34 v~Iv~~G~~~~-~~~~~~~----~~~~--~~iI~aDgGa~~L~~~gi~Pd~ivGDfDSi~~e~~~~~~~---~i~~~~~k 103 (231)
T 2omk_A 34 AIILANGEYPA-HELPLRL----LAEA--QFVVCCXXAANEYISRGHTPDVIIGDGDSLLPEYKKRFSS---IILQISDQ 103 (231)
T ss_dssp EEEECSSSCCC-SHHHHHH----HHHC--SCEEEC--CHHHHHHTTCCCSEEESCGGGSCHHHHHHHGG---GEECCCSS
T ss_pred EEEEECCCCch-hHHHHHH----HhcC--CEEEEEhHHHHHHHHcCCCCCEEEeCCcCCCHHHHHhcCC---EEEeCCCC
Confidence 56667887662 2222222 2332 25899999998887643 11222 34443333331 12211111
Q ss_pred -cccHHHHHHHHHHcCCCEEEEecCCCc
Q 042534 157 -GFDLHQIVDAIQTNAFNQVYIIGGDGT 183 (447)
Q Consensus 157 -~~~~~~iv~~l~~~~Id~L~vIGGdgS 183 (447)
.-|.++++..+.+++.+-++++|+-|.
T Consensus 104 D~TD~e~Al~~a~~~g~~~I~i~Ga~Gg 131 (231)
T 2omk_A 104 ETNDQTKAVHYLQSKGIRKIAIVGATGK 131 (231)
T ss_dssp CCCHHHHHHHHHHHTTCCEEEEESCSSS
T ss_pred CCCHHHHHHHHHHHcCCCEEEEECccCC
Confidence 237999999999999999999999987
No 165
>3lmz_A Putative sugar isomerase; structural genomics, joint center structural genomics, JCSG, protein structure initiative, PS isomerase; HET: MSE CIT PGE; 1.44A {Parabacteroides distasonis}
Probab=21.11 E-value=3.2e+02 Score=24.47 Aligned_cols=50 Identities=18% Similarity=0.179 Sum_probs=39.2
Q ss_pred ccHHHHHHHHHHcCCCEEEEecC----CCcHHHHHHHHHHHHHcCCcceEeeec
Q 042534 158 FDLHQIVDAIQTNAFNQVYIIGG----DGTMRGAVEIFDEIQRRKINVGVVGIP 207 (447)
Q Consensus 158 ~~~~~iv~~l~~~~Id~L~vIGG----dgS~~~A~~L~~~~~~~~~~i~VVgIP 207 (447)
.+++++++.+++.|++++=+.+. +-+-..+..+.+.+++.|+.+..++.+
T Consensus 30 ~~~~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~~l~~~gl~i~~~~~~ 83 (257)
T 3lmz_A 30 FDLDTTLKTLERLDIHYLCIKDFHLPLNSTDEQIRAFHDKCAAHKVTGYAVGPI 83 (257)
T ss_dssp SCHHHHHHHHHHTTCCEEEECTTTSCTTCCHHHHHHHHHHHHHTTCEEEEEEEE
T ss_pred CCHHHHHHHHHHhCCCEEEEecccCCCCCCHHHHHHHHHHHHHcCCeEEEEecc
Confidence 46899999999999999977765 334556678888888888887777654
No 166
>2x5n_A SPRPN10, 26S proteasome regulatory subunit RPN10; nuclear protein, nucleus, ubiquitin; 1.30A {Schizosaccharomyces pombe}
Probab=21.11 E-value=1.4e+02 Score=26.51 Aligned_cols=49 Identities=10% Similarity=0.253 Sum_probs=33.1
Q ss_pred HHHHHHHHHHcC---CCE--EEEecCCCc--HHHHHHHHHHHHHcCCcceEeeecc
Q 042534 160 LHQIVDAIQTNA---FNQ--VYIIGGDGT--MRGAVEIFDEIQRRKINVGVVGIPK 208 (447)
Q Consensus 160 ~~~iv~~l~~~~---Id~--L~vIGGdgS--~~~A~~L~~~~~~~~~~i~VVgIPk 208 (447)
++.+.+.|++.. -.. ++++.|+.+ -.....+++.+++.|..+.+||+=.
T Consensus 90 L~~A~~~l~~~~~~~~~~riiil~~~~~~~~~~~~~~~a~~lk~~gi~v~~Ig~G~ 145 (192)
T 2x5n_A 90 IQIAQLALKHRENKIQRQRIVAFVGSPIVEDEKNLIRLAKRMKKNNVAIDIIHIGE 145 (192)
T ss_dssp HHHHHHHHHTCSCTTSEEEEEEEECSCCSSCHHHHHHHHHHHHHTTEEEEEEEESC
T ss_pred HHHHHHHHHhccccCCCceEEEEEECCCCCCchhHHHHHHHHHHCCCEEEEEEeCC
Confidence 567777777643 222 566655553 4556678888889999988888843
No 167
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=20.98 E-value=1.1e+02 Score=27.92 Aligned_cols=50 Identities=20% Similarity=0.335 Sum_probs=33.5
Q ss_pred chHHHHHhhccCCccEEecCCCCCCcc--hhhhHHHHHHHHHhhCCcEEEEEe
Q 042534 259 GHIALHATLSSRDVDCCLIPEMEFYLE--GKGGLVEFLDNRLKENGHAVLVVA 309 (447)
Q Consensus 259 G~lAl~aaLA~~~ad~ilIPE~~f~le--~~~~l~~~i~~r~~~k~~~vIvva 309 (447)
=-++++.||+.. +++++.=|.--.|| ....+++.|++..++++.+||+++
T Consensus 152 QRv~iAral~~~-p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vt 203 (235)
T 3tif_A 152 QRVAIARALANN-PPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVT 203 (235)
T ss_dssp HHHHHHHHHTTC-CSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEC
T ss_pred HHHHHHHHHHcC-CCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEc
Confidence 368899999996 99988877544454 233455555544344578888875
No 168
>3ksr_A Putative serine hydrolase; catalytic triad, structural genomics, JOIN for structural genomics, JCSG; 2.69A {Xanthomonas campestris PV}
Probab=20.92 E-value=2e+02 Score=25.54 Aligned_cols=91 Identities=11% Similarity=0.024 Sum_probs=46.6
Q ss_pred EEEecCCCcHHHHHHHHHHHHHcCCcceEeeecccccccccCcCcccChhhHHHHHHHHHHHHHHhhhhcCCcEEEEEec
Q 042534 175 VYIIGGDGTMRGAVEIFDEIQRRKINVGVVGIPKTVDNDVGIIDRSFGFQTAVEMAQQAISAAHVEAESAVNGIGLVKLM 254 (447)
Q Consensus 175 L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVgIPkTIDNDi~~tD~s~GFdTAv~~~~~ai~~i~~~A~S~~~~v~iVevM 254 (447)
|++=|+.++...-..+++.+.++|+.+-++-.|..=..+-. .....++..++-+..+++.+.....-..+++++ +
T Consensus 32 v~~HG~~~~~~~~~~~~~~l~~~g~~v~~~d~~G~g~s~~~--~~~~~~~~~~~d~~~~i~~l~~~~~~~~~~v~l---~ 106 (290)
T 3ksr_A 32 LFVHGWGGSQHHSLVRAREAVGLGCICMTFDLRGHEGYASM--RQSVTRAQNLDDIKAAYDQLASLPYVDAHSIAV---V 106 (290)
T ss_dssp EEECCTTCCTTTTHHHHHHHHTTTCEEECCCCTTSGGGGGG--TTTCBHHHHHHHHHHHHHHHHTSTTEEEEEEEE---E
T ss_pred EEeCCCCCCcCcHHHHHHHHHHCCCEEEEeecCCCCCCCCC--cccccHHHHHHHHHHHHHHHHhcCCCCccceEE---E
Confidence 34444445444455667777777765444433333222222 122456666777777777765432111234444 4
Q ss_pred CCcc-chHHHHHhhccC
Q 042534 255 GRST-GHIALHATLSSR 270 (447)
Q Consensus 255 GR~s-G~lAl~aaLA~~ 270 (447)
|-+. |++|+.++....
T Consensus 107 G~S~Gg~~a~~~a~~~~ 123 (290)
T 3ksr_A 107 GLSYGGYLSALLTRERP 123 (290)
T ss_dssp EETHHHHHHHHHTTTSC
T ss_pred EEchHHHHHHHHHHhCC
Confidence 5554 577776665543
No 169
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=20.90 E-value=1.3e+02 Score=25.15 Aligned_cols=86 Identities=10% Similarity=0.123 Sum_probs=0.0
Q ss_pred CCCceEEEEccCCCCccHHHHHHHHHHHHHHhcCCeEE-EEEcccccccccCCCCeEECChhhhhchhccCCccccccCC
Q 042534 78 PKNTRAAIVTCGGLCPGLNTVIRELVVGLWELYGVRQI-LGIQAGYRGFYSTTRNPLVLNPKMVRGWHKLGGTVLETSRG 156 (447)
Q Consensus 78 p~~~kiaIvtsGG~~PGlN~vIr~vv~~~~~~~~~~~V-~Gi~~G~~GL~~~~~~~~~L~~~~v~~i~~~GGt~LGssR~ 156 (447)
.++.|+-+.|.||+ .++.=.-++..+.+..|+.-+ .| ...-..+.++......--+++.|-.
T Consensus 1 ~~~~~vvla~~~~d---~HdiG~~~v~~~l~~~G~~Vi~lG--------------~~~p~e~~v~~a~~~~~d~v~lS~~ 63 (137)
T 1ccw_A 1 MEKKTIVLGVIGSD---CHAVGNKILDHAFTNAGFNVVNIG--------------VLSPQELFIKAAIETKADAILVSSL 63 (137)
T ss_dssp CCCCEEEEEEETTC---CCCHHHHHHHHHHHHTTCEEEEEE--------------EEECHHHHHHHHHHHTCSEEEEEEC
T ss_pred CCCCEEEEEeCCCc---hhHHHHHHHHHHHHHCCCEEEECC--------------CCCCHHHHHHHHHhcCCCEEEEEec
Q ss_pred c----ccHHHHHHHHHHcCC-CEEEEecC
Q 042534 157 G----FDLHQIVDAIQTNAF-NQVYIIGG 180 (447)
Q Consensus 157 ~----~~~~~iv~~l~~~~I-d~L~vIGG 180 (447)
. ....+.++.|++.+. +..+++||
T Consensus 64 ~~~~~~~~~~~i~~l~~~g~~~i~v~vGG 92 (137)
T 1ccw_A 64 YGQGEIDCKGLRQKCDEAGLEGILLYVGG 92 (137)
T ss_dssp SSTHHHHHTTHHHHHHHTTCTTCEEEEEE
T ss_pred CcCcHHHHHHHHHHHHhcCCCCCEEEEEC
No 170
>1zq1_A Glutamyl-tRNA(Gln) amidotransferase subunit D; X-RAY, 3D structure, asparaginase 1 family, GATD subfamily, lyase; 3.00A {Pyrococcus abyssi} SCOP: b.38.3.1 c.88.1.1
Probab=20.70 E-value=2.6e+02 Score=28.62 Aligned_cols=44 Identities=20% Similarity=0.262 Sum_probs=26.6
Q ss_pred HHHHHHHHHcCCCEEEEecCCCcHHHHHHHHHHHHHcCCcceEeee
Q 042534 161 HQIVDAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGI 206 (447)
Q Consensus 161 ~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVgI 206 (447)
+.|.+.+.+ +.|++||.=|=+||.-...+-...- .+...+||-.
T Consensus 159 ~~I~~~~~~-~~DG~VItHGTDTMeeTA~~Lsl~l-~~~~KPVVlT 202 (438)
T 1zq1_A 159 HEVAKALNS-GDYGVVVAHGTDTMGYTAAALSFML-RNLGKPVVLV 202 (438)
T ss_dssp HHHHHHHHT-TCSEEEEECCSSSHHHHHHHHHHHE-ESCCSCEEEE
T ss_pred HHHHHHhcc-CCCeEEEecCchhHHHHHHHHHHHH-hCCCCCEEEe
Confidence 334444443 8999999999999976443333332 1345566643
No 171
>3pl5_A SMU_165, putative uncharacterized protein; fatty acid binding protein, lipid binding protein; HET: PLM; 2.04A {Streptococcus mutans}
Probab=20.64 E-value=1.4e+02 Score=29.15 Aligned_cols=128 Identities=22% Similarity=0.176 Sum_probs=71.7
Q ss_pred ceEEEEc-cCCCCccHHHHHHHHHHHHHHhcCCeEEEEEccccccc-ccCCCCeEE--CChhhhhchhccCCccccccCC
Q 042534 81 TRAAIVT-CGGLCPGLNTVIRELVVGLWELYGVRQILGIQAGYRGF-YSTTRNPLV--LNPKMVRGWHKLGGTVLETSRG 156 (447)
Q Consensus 81 ~kiaIvt-sGG~~PGlN~vIr~vv~~~~~~~~~~~V~Gi~~G~~GL-~~~~~~~~~--L~~~~v~~i~~~GGt~LGssR~ 156 (447)
++++||| |.-+-| ....+.|++ .|+-+.-=+.|= |.+. ++ ++++.+-..... |....||--
T Consensus 35 M~i~IvtDSt~dL~----------~e~~~~~~I-~vvPL~v~~~~~~Y~D~---vd~~i~~~efy~~m~~-~~~p~TSqP 99 (320)
T 3pl5_A 35 MTFKILTDSTADLP----------ESWTQENDV-QVLGLTVQLDGITYETV---GPDRLTSRVLLEKIAA-GSKPTTSQV 99 (320)
T ss_dssp -CCEEEEEGGGCCC----------HHHHHHHTE-EEECCEEEETTEEEESS---STTCCCHHHHHHHHHT-TCCCEEECC
T ss_pred ccEEEEEECCCCCC----------HHHHHhCCe-EEEeEEEEECCEEEEcC---CCCCcCHHHHHHHHhc-CCCCccCCC
Confidence 5799999 655555 122245665 343322111111 1122 23 788877776666 455667663
Q ss_pred c-ccHHHHHHHHHHcCCCEEEEe----cCCCcHHHHHHHHHHHHHc--CCcceEeeecccccccccCcCcccChhhHHHH
Q 042534 157 G-FDLHQIVDAIQTNAFNQVYII----GGDGTMRGAVEIFDEIQRR--KINVGVVGIPKTVDNDVGIIDRSFGFQTAVEM 229 (447)
Q Consensus 157 ~-~~~~~iv~~l~~~~Id~L~vI----GGdgS~~~A~~L~~~~~~~--~~~i~VVgIPkTIDNDi~~tD~s~GFdTAv~~ 229 (447)
. .++.++.+.+.+.+ +.+++| |=-||+..|...++.+.+. +.+|.|| |. . --|.|..=.+..
T Consensus 100 s~~~~~~~f~~l~~~g-~~Ii~I~iSS~LSGTy~sA~~Aa~~~~e~~~~~~I~Vi------DS--~--~~s~g~g~lv~~ 168 (320)
T 3pl5_A 100 NVGQFESYFRQSAENG-QEVLYIAFSSVLSGTYQSAVMARDIVLEEYPQASIEIV------DT--L--AATGGEGYLAML 168 (320)
T ss_dssp CHHHHHHHHHHHHHTT-CCEEEEECCTTTCTHHHHHHHHHHHHHHHCTTCCEEEE------EC--C--CCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCC-CeEEEEecCchHhHHHHHHHHHHHHHHhhCCCCeEEEE------cC--C--chHHHHHHHHHH
Confidence 3 35777777777778 566666 3478888888777766543 2445554 21 1 135566656666
Q ss_pred HHHHH
Q 042534 230 AQQAI 234 (447)
Q Consensus 230 ~~~ai 234 (447)
|++.+
T Consensus 169 Aa~l~ 173 (320)
T 3pl5_A 169 AAQAR 173 (320)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66554
No 172
>3lop_A Substrate binding periplasmic protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.55A {Ralstonia solanacearum}
Probab=20.50 E-value=1.2e+02 Score=28.59 Aligned_cols=103 Identities=11% Similarity=0.116 Sum_probs=58.3
Q ss_pred ccHHHHHHHHHHHHHHhcCCeEEEEEcccccccccCCCCeEECChhhhhchhccCCccccccC---CcccHHHHHHHHHH
Q 042534 93 PGLNTVIRELVVGLWELYGVRQILGIQAGYRGFYSTTRNPLVLNPKMVRGWHKLGGTVLETSR---GGFDLHQIVDAIQT 169 (447)
Q Consensus 93 PGlN~vIr~vv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~~~L~~~~v~~i~~~GGt~LGssR---~~~~~~~iv~~l~~ 169 (447)
|--....+.+++.+. ..|+++|.-+..-.. + -........+.+...|+.+..... +..|....+..+++
T Consensus 123 ~~~~~~~~~~~~~l~-~~g~~~iaii~~~~~--~-----g~~~~~~~~~~~~~~G~~v~~~~~~~~~~~d~~~~~~~l~~ 194 (364)
T 3lop_A 123 ASYQQEIDKMITALV-TIGVTRIGVLYQEDA--L-----GKEAITGVERTLKAHALAITAMASYPRNTANVGPAVDKLLA 194 (364)
T ss_dssp CCHHHHHHHHHHHHH-HTTCCCEEEEEETTH--H-----HHHHHHHHHHHHHTTTCCCSEEEEECTTSCCCHHHHHHHHH
T ss_pred CChHHHHHHHHHHHH-HcCCceEEEEEeCch--h-----hHHHHHHHHHHHHHcCCcEEEEEEecCCCccHHHHHHHHHh
Confidence 344455666777665 567665554421100 0 000011112334455666554322 23467888889999
Q ss_pred cCCCEEEEecCCCcHHHHHHHHHHHHHcCCcceEeee
Q 042534 170 NAFNQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGI 206 (447)
Q Consensus 170 ~~Id~L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVgI 206 (447)
.+.+++|+.+-+ ..+..+.+.+++.|+++++++.
T Consensus 195 ~~~d~v~~~~~~---~~a~~~~~~~~~~g~~~~~i~~ 228 (364)
T 3lop_A 195 ADVQAIFLGATA---EPAAQFVRQYRARGGEAQLLGL 228 (364)
T ss_dssp SCCSEEEEESCH---HHHHHHHHHHHHTTCCCEEEEC
T ss_pred CCCCEEEEecCc---HHHHHHHHHHHHcCCCCeEEEe
Confidence 999998887633 3345566778888988776654
No 173
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=20.33 E-value=1.4e+02 Score=27.06 Aligned_cols=56 Identities=16% Similarity=0.275 Sum_probs=35.1
Q ss_pred EecCCccchHHHHHhhccCCccEEecCCCCCCcch--hhhHHHHHHHHHhhCCcEEEEEe
Q 042534 252 KLMGRSTGHIALHATLSSRDVDCCLIPEMEFYLEG--KGGLVEFLDNRLKENGHAVLVVA 309 (447)
Q Consensus 252 evMGR~sG~lAl~aaLA~~~ad~ilIPE~~f~le~--~~~l~~~i~~r~~~k~~~vIvva 309 (447)
++-|..-=-++++.||+.. +++++.=|.--.||- ...+.+.|++ +++++.+||+++
T Consensus 140 ~LSgGq~qrv~laral~~~-p~lllLDEPt~~LD~~~~~~~~~~l~~-l~~~g~tvi~vt 197 (224)
T 2pcj_A 140 ELSGGEQQRVAIARALANE-PILLFADEPTGNLDSANTKRVMDIFLK-INEGGTSIVMVT 197 (224)
T ss_dssp GSCHHHHHHHHHHHHTTTC-CSEEEEESTTTTCCHHHHHHHHHHHHH-HHHTTCEEEEEC
T ss_pred hCCHHHHHHHHHHHHHHcC-CCEEEEeCCCCCCCHHHHHHHHHHHHH-HHHCCCEEEEEc
Confidence 3334444467889999986 999888774434542 3345555544 333477888775
No 174
>3qyf_A Crispr-associated protein; helix-turn-helix, antiviral protein, viral resistance, nucle binding domain; 1.90A {Sulfolobus solfataricus}
Probab=20.26 E-value=4e+02 Score=26.15 Aligned_cols=126 Identities=12% Similarity=0.132 Sum_probs=68.5
Q ss_pred HHHHHHHHHHcC----CCEEEEecCC--CcHHHHHHHHHHHHHcCCcceEeeecccccccccCcCcccChhhHHHHHHHH
Q 042534 160 LHQIVDAIQTNA----FNQVYIIGGD--GTMRGAVEIFDEIQRRKINVGVVGIPKTVDNDVGIIDRSFGFQTAVEMAQQA 233 (447)
Q Consensus 160 ~~~iv~~l~~~~----Id~L~vIGGd--gS~~~A~~L~~~~~~~~~~i~VVgIPkTIDNDi~~tD~s~GFdTAv~~~~~a 233 (447)
+..+...+++.. -..++.+--| .+...|..|.+++++.|+++.++-|+ |+.. .=.|.-++....+.
T Consensus 76 LNsL~~l~~~~~~~~~d~~v~Ll~SDT~~G~l~AeiLke~l~~~G~~v~~~~V~-----gL~~---~~~F~~GL~nLv~~ 147 (324)
T 3qyf_A 76 LDSLFSTFEKLKHNKSEIYVFLYSTNTSNSQLAGEVIRDYLIEEGIRSELVTVK-----TISS---EENFYEGIVDLFDK 147 (324)
T ss_dssp HHHHHHHHHHHTCCGGGEEEEEEEESSHHHHHHHHHHHHHHHHTTCEEEEEEEC-----CCCS---HHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhccccCCCcEEEEEecCCHHHHHHHHHHHHHHHHcCCeeEEEEcC-----CCCc---hHHHHHHHHHHHHH
Confidence 444555544431 1234444433 33555777888888887765554444 2222 22355566666555
Q ss_pred HHHHHHhhhhcCCcEEEEEecCCcc--chHHHHHhhccCC---------ccEEecCCCCCCcchhhhHHHHHH
Q 042534 234 ISAAHVEAESAVNGIGLVKLMGRST--GHIALHATLSSRD---------VDCCLIPEMEFYLEGKGGLVEFLD 295 (447)
Q Consensus 234 i~~i~~~A~S~~~~v~iVevMGR~s--G~lAl~aaLA~~~---------ad~ilIPE~~f~le~~~~l~~~i~ 295 (447)
+...-..+......++|-=+=|..+ +|+++.+.+..-+ -+++-||-.|++++. .+++.++
T Consensus 148 v~~~i~~~~~~g~~v~~N~TGGfKaei~yl~l~g~l~Ga~~v~Yi~E~~~~Li~LP~lPi~ld~--~~~~~lk 218 (324)
T 3qyf_A 148 VIYRILKFKEQDNEVYINATPGLKPESIFLTLAGLLAGADLIYYKYQEFNDVVILPSPPITIRP--KYLDWLI 218 (324)
T ss_dssp THHHHHHHHHTTCEEEEECSSSCHHHHHHHHHHHHHTTCCEEEEEETTTTEEEEECCCCEEECH--HHHHHHH
T ss_pred HHHHHHhhccCCceEEEEcCCCcchHHHHHHHHHHHcCCCeEEEEEcCCCceEEcCCCCcccCH--HHHHHHH
Confidence 5444444443234566666666665 7777777776311 245666777888773 3444443
No 175
>2yrx_A Phosphoribosylglycinamide synthetase; glycinamide ribonucleotide synthetase, GAR synthetase; HET: AMP; 1.90A {Geobacillus kaustophilus} PDB: 2yrw_A* 2ys6_A* 2ys7_A
Probab=20.15 E-value=2.1e+02 Score=28.45 Aligned_cols=44 Identities=18% Similarity=0.379 Sum_probs=26.7
Q ss_pred ccHHHHHHHHHHcCCCEEEEecCCCcHHHHHHHHHHHHHcCCcceEeee
Q 042534 158 FDLHQIVDAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGI 206 (447)
Q Consensus 158 ~~~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVgI 206 (447)
.|.+.+++.+++.++|.+++ |.+... ...+++.+++.| ++++|-
T Consensus 70 ~d~~~l~~~~~~~~~d~vi~-~~E~~~--~~~~~~~l~~~g--i~~~g~ 113 (451)
T 2yrx_A 70 LDIEALVQFAKQQAIDLTIV-GPEAPL--ASGIVDRFMAEG--LRIFGP 113 (451)
T ss_dssp TCHHHHHHHHHHTTCSEEEE-CSHHHH--HTTHHHHHHHTT--CCEESC
T ss_pred CCHHHHHHHHHHcCCCEEEE-CCchHH--HHHHHHHHHHCC--CCEeCc
Confidence 36788999999999998776 433222 223445555444 445543
No 176
>4h1h_A LMO1638 protein; MCCF-like, csgid, MCCF homolog, structural genomics, niaid, institute of allergy and infectious diseases; 2.46A {Listeria monocytogenes}
Probab=20.01 E-value=1.5e+02 Score=28.89 Aligned_cols=31 Identities=16% Similarity=0.244 Sum_probs=24.5
Q ss_pred HHHHHHHHHHcCCCEEEE-ecCCCcHHHHHHH
Q 042534 160 LHQIVDAIQTNAFNQVYI-IGGDGTMRGAVEI 190 (447)
Q Consensus 160 ~~~iv~~l~~~~Id~L~v-IGGdgS~~~A~~L 190 (447)
.+.+-+.+..-.|+++++ +||+|+++-.-.|
T Consensus 67 a~dL~~a~~Dp~i~aI~~~rGG~g~~rlL~~L 98 (327)
T 4h1h_A 67 VADIHEAFNDSSVKAILTVIGGFNSNQLLPYL 98 (327)
T ss_dssp HHHHHHHHHCTTEEEEEESCCCSCGGGGGGGC
T ss_pred HHHHHHHhhCCCCCEEEEcCCchhHHHHhhhc
Confidence 567777788889999886 5999998876543
Done!