RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 042534
(447 letters)
>gnl|CDD|178178 PLN02564, PLN02564, 6-phosphofructokinase.
Length = 484
Score = 633 bits (1635), Expect = 0.0
Identities = 256/447 (57%), Positives = 320/447 (71%), Gaps = 15/447 (3%)
Query: 1 PHLTDYLQLENLKTYTNPLDQNRFFHPSHGFYVSPSDVILRQIVYDLSSACGAFSDSDPR 60
PHLTDYL +L TY NPL N + ++V+ D + ++IV S G
Sbjct: 20 PHLTDYLP--DLPTYPNPLQDNPAYSVVKQYFVNEDDTVAQKIVVHKDSPRG-------- 69
Query: 61 VHVAYHRAGPRKQIFFEPKNTRAAIVTCGGLCPGLNTVIRELVVGLWELYGVRQILGIQA 120
H + RAGPR++++FE RA IVTCGGLCPGLNTVIRE+V GL +YGV +ILGI
Sbjct: 70 TH--FRRAGPRQKVYFESDEVRACIVTCGGLCPGLNTVIREIVCGLSYMYGVTRILGIDG 127
Query: 121 GYRGFYSTTRNPLVLNPKMVRGWHKLGGTVLETSRGGFDLHQIVDAIQTNAFNQVYIIGG 180
GYRGFYS RN + L PK+V HK GGT+L TSRGG D +IVD+IQ NQVYIIGG
Sbjct: 128 GYRGFYS--RNTIPLTPKVVNDIHKRGGTILGTSRGGHDTSKIVDSIQDRGINQVYIIGG 185
Query: 181 DGTMRGAVEIFDEIQRRKINVGVVGIPKTVDNDVGIIDRSFGFQTAVEMAQQAISAAHVE 240
DGT +GA I++EI+RR + V V GIPKT+DND+ +ID+SFGF TAVE AQ+AI+AAHVE
Sbjct: 186 DGTQKGASVIYEEIRRRGLKVAVAGIPKTIDNDIPVIDKSFGFDTAVEEAQRAINAAHVE 245
Query: 241 AESAVNGIGLVKLMGRSTGHIALHATLSSRDVDCCLIPEMEFYLEGKGGLVEFLDNRLKE 300
AES NGIGLVKLMGR +G IA++ATL+SRDVDCCLIPE FYLEGKGGL EF++ RLKE
Sbjct: 246 AESVENGIGLVKLMGRYSGFIAMYATLASRDVDCCLIPESPFYLEGKGGLFEFIEKRLKE 305
Query: 301 NGHAVLVVAEGAGQNMIPRTAAQTEERDESGNLVFLDVGSWLKTELKKWWARDHPGELFT 360
NGH V+VVAEGAGQ++I + ++ +D SGN + LDVG WL ++K + + +
Sbjct: 306 NGHMVIVVAEGAGQDLIAESMESSDLQDASGNKLLLDVGLWLSQKIKDHFTKVKKMPI-N 364
Query: 361 VKYIDPTYMIRAVPANATDNLYCTLLAHSAIHGVMAGYTGFVSGPINGNYAYIPLEDVAQ 420
+KYIDPTYMIRA+P+NA+DN+YCTLLAHSA+HG MAGYTGF GP+NG +AYIP + +
Sbjct: 365 LKYIDPTYMIRAIPSNASDNVYCTLLAHSAVHGAMAGYTGFTVGPVNGRHAYIPFYRITE 424
Query: 421 ATNAVNTKDHKWAWVRTVTNQPDFVKS 447
N V D WA + + TNQP F+
Sbjct: 425 KQNKVVITDRMWARLLSSTNQPSFLSP 451
>gnl|CDD|235869 PRK06830, PRK06830, diphosphate--fructose-6-phosphate
1-phosphotransferase; Provisional.
Length = 443
Score = 499 bits (1287), Expect = e-176
Identities = 196/417 (47%), Positives = 267/417 (64%), Gaps = 13/417 (3%)
Query: 32 YVSPSDVILRQIVYDLSSACGAFSDSDPRVHVAYHRAGPRKQIFFEPKNTRAAIVTCGGL 91
+VS SD +L + L A ++ +AGPR++I+F+P +AAIVTCGGL
Sbjct: 36 FVSDSDRVLFDVSLSLIKEEDA----PGTEPPSFEKAGPREKIYFDPSKVKAAIVTCGGL 91
Query: 92 CPGLNTVIRELVVGLWELYGVRQILGIQAGYRGFYSTTR-NPLVLNPKMVRGWHKLGGTV 150
CPGLN VIR +V+ L YGVR+ILGI+ GY+G +P+ L P++V H+ GGT+
Sbjct: 92 CPGLNDVIRAIVLELHHHYGVRRILGIRYGYQGLIPRYGHDPVELTPEVVADIHEFGGTI 151
Query: 151 LETSRGGFDLHQIVDAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGIPKTV 210
L +SRG D +IVD ++ N +++IGGDGT+RGA I +EI+RR + + V+GIPKT+
Sbjct: 152 LGSSRGPQDPEEIVDTLERMNINILFVIGGDGTLRGASAIAEEIERRGLKISVIGIPKTI 211
Query: 211 DNDVGIIDRSFGFQTAVEMAQQAISAAHVEAESAVNGIGLVKLMGRSTGHIALHATLSSR 270
DND+ I +SFGF+TAVE A +AI AHVEA A NGIGLVKLMGR +G IA +A L+S+
Sbjct: 212 DNDINFIQKSFGFETAVEKATEAIRCAHVEANGAPNGIGLVKLMGRHSGFIAAYAALASK 271
Query: 271 DVDCCLIPEMEFYLEGKGGLVEFLDNRLKENGHAVLVVAEGAGQNMIPRTAAQTEERDES 330
DV+ LIPE+ F LEG GL+ L+ RL E GHAV+VVAEGAGQ + T E D S
Sbjct: 272 DVNFVLIPEVPFDLEGPNGLLAALEKRLAERGHAVIVVAEGAGQELFD----DTGETDAS 327
Query: 331 GNLVFLDVGSWLKTELKKWW-ARDHPGELFTVKYIDPTYMIRAVPANATDNLYCTLLAHS 389
GN D+G +LK +K+++ AR P +KYIDP+Y+IR+VPANA D++YC L +
Sbjct: 328 GNPKLGDIGLFLKDRIKEYFKARGIP---INLKYIDPSYIIRSVPANANDSVYCGFLGQN 384
Query: 390 AIHGVMAGYTGFVSGPINGNYAYIPLEDVAQATNAVNTKDHKWAWVRTVTNQPDFVK 446
A+H MAG TG V G N + ++P++ VN + W V T QP +
Sbjct: 385 AVHAAMAGKTGMVVGRWNNRFVHLPIDLAVSKRKKVNPEGDLWRSVLESTGQPRSMG 441
>gnl|CDD|185539 PTZ00286, PTZ00286, 6-phospho-1-fructokinase; Provisional.
Length = 459
Score = 486 bits (1253), Expect = e-170
Identities = 198/383 (51%), Positives = 270/383 (70%), Gaps = 10/383 (2%)
Query: 65 YHRAGPRKQIFFEPKNTRAAIVTCGGLCPGLNTVIRELVVGLWELYGVRQILGIQAGYRG 124
+ RAGPRK ++F PK +A IVTCGGLCPGLN VIRELV+ L YGV+ I G + GY+G
Sbjct: 72 WLRAGPRKHLYFNPKEVKAGIVTCGGLCPGLNVVIRELVMNLINNYGVKTIYGAKYGYKG 131
Query: 125 FYSTTRNPLVLNPKMVRGWHKLGGTVLETSRGGFDLHQIVDAIQTNAFNQVYIIGGDGTM 184
Y + + L+PK V+ H+LGGT+L +SRGGFD +VD + + N ++ +GGDGT
Sbjct: 132 LYK--EDWIKLDPKDVKTIHRLGGTILGSSRGGFDPKVMVDTLIRHGINILFTLGGDGTH 189
Query: 185 RGAVEIFDEIQRRKINVGVVGIPKTVDNDVGIIDRSFGFQTAVEMAQQAISAAHVEAESA 244
RGA+ I+ E++RRK+N+ VVGIPKT+DND+ IID SFGFQTAVE AQ AI AA+VEA+SA
Sbjct: 190 RGALAIYKELRRRKLNISVVGIPKTIDNDIPIIDESFGFQTAVEEAQNAIRAAYVEAKSA 249
Query: 245 VNGIGLVKLMGRSTGHIALHATLSSRDVDCCLIPEMEFYLEGKGGLVEFLDNRLKENGHA 304
NG+G+VKLMGR +G IALHA+++S DV+ CLIPE + LE G++E+++ RL++ GH
Sbjct: 250 KNGVGIVKLMGRDSGFIALHASVASADVNVCLIPEFDIPLE---GVLEYIEQRLQKKGHC 306
Query: 305 VLVVAEGAGQNMIPRTAAQTEERDESGNLVFLDVGSWLKTELKKWWARDHPGELFTVKYI 364
V+VVAEGAGQ++ + A D SGN D+G +LK E+ K+ + TVKYI
Sbjct: 307 VIVVAEGAGQSL--KDADLDLGTDASGNKKLWDIGVYLKDEITKYLKKK--KPEHTVKYI 362
Query: 365 DPTYMIRAVPANATDNLYCTLLAHSAIHGVMAGYTGFVSGPINGNYAYIPLEDVA-QATN 423
DP+YMIRAVPANA D +CT LA +A+HG MAG+TGF+ G ++ NY IP+++++
Sbjct: 363 DPSYMIRAVPANAADAKFCTQLAQNAVHGAMAGFTGFIIGHVHNNYVMIPIKEMSGNYRR 422
Query: 424 AVNTKDHKWAWVRTVTNQPDFVK 446
VN + W + +T QP F+
Sbjct: 423 RVNPEGRLWQRMLAITGQPSFLN 445
>gnl|CDD|178472 PLN02884, PLN02884, 6-phosphofructokinase.
Length = 411
Score = 423 bits (1090), Expect = e-146
Identities = 200/417 (47%), Positives = 279/417 (66%), Gaps = 10/417 (2%)
Query: 32 YVSPSD-VILRQIVYDLSSACGA-FSDSDPR-VHVAYHRAGPRKQIFFEPKNTRAAIVTC 88
YV+ D V+L+ I Y ++ GA D D V HRAGPRK+I+FEP+ +AAIVTC
Sbjct: 2 YVNNDDRVLLKVIKYSSPTSAGAECIDPDCSWVEQWVHRAGPRKKIYFEPEEVKAAIVTC 61
Query: 89 GGLCPGLNTVIRELVVGLWELYGVRQILGIQAGYRGFYSTTRNPLVLNPKMVRGWHKLGG 148
GGLCPGLN VIR++V L E+YGV+ I+GI GYRGF+ + + L+ K+V+ H GG
Sbjct: 62 GGLCPGLNDVIRQIVFTL-EIYGVKNIVGIPFGYRGFFEKGLSEMPLSRKVVQNIHLSGG 120
Query: 149 TVLETSRGGFDLHQIVDAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGIPK 208
++L SRGG IVD+I+ N ++++GG+GT GA I +E ++RK+ V VVG+PK
Sbjct: 121 SLLGVSRGGAKTSDIVDSIEARGINMLFVLGGNGTHAGANAIHNECRKRKMKVSVVGVPK 180
Query: 209 TVDNDVGIIDRSFGFQTAVEMAQQAISAAHVEAESAVNGIGLVKLMGRSTGHIALHATLS 268
T+DND+ ++D++FGF TAVE AQ+AI++A++EA SA +GIGLVKLMGRS+G IA+HA+L+
Sbjct: 181 TIDNDILLMDKTFGFDTAVEEAQRAINSAYIEAHSAYHGIGLVKLMGRSSGFIAMHASLA 240
Query: 269 SRDVDCCLIPEMEFYLEGKGGLVEFLDNRLKENGHAVLVVAEGAGQNMIPRTAAQTEERD 328
S VD CLIPE+ F L+G G++ L++ ++ G AV+ VAEGAGQ+++ +T A D
Sbjct: 241 SGQVDICLIPEVPFTLDGPNGVLRHLEHLIETKGSAVVCVAEGAGQDLLQKTNA----TD 296
Query: 329 ESGNLVFLDVGSWLKTELKKWWARDHPGELFTVKYIDPTYMIRAVPANATDNLYCTLLAH 388
SGN V D+G L+ E+KK + G VKYIDPTYMIRA ANA+D + CT+L
Sbjct: 297 ASGNPVLGDIGVHLQQEIKKHFKD--IGVPADVKYIDPTYMIRACRANASDAILCTVLGQ 354
Query: 389 SAIHGVMAGYTGFVSGPINGNYAYIPLEDVAQATNAVNTKDHKWAWVRTVTNQPDFV 445
+A+HG AG++G G N +Y Y+P+ +V V+ W T T QPDF
Sbjct: 355 NAVHGAFAGFSGITVGICNTHYVYLPIPEVIAYPRRVDPNSRMWHRCLTSTGQPDFH 411
>gnl|CDD|223283 COG0205, PfkA, 6-phosphofructokinase [Carbohydrate transport and
metabolism].
Length = 347
Score = 201 bits (513), Expect = 9e-61
Identities = 94/357 (26%), Positives = 154/357 (43%), Gaps = 50/357 (14%)
Query: 82 RAAIVTCGGLCPGLNTVIRELVVGLWELYGVRQILGIQAGYRGFYSTTRNPLV-LNPKMV 140
+ AI+T GG PG+N VIR +V G+ + GI GY G + L + V
Sbjct: 4 KIAILTSGGDAPGMNAVIRAVVRTAI-KEGLE-VFGIYNGYLGLL---EGDIKPLTREDV 58
Query: 141 RGWHKLGGTVLETSRGGFD-----LHQIVDAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQ 195
GGT L ++R + ++ + + +IGGDG+ GA + +E
Sbjct: 59 DDLINRGGTFLGSARFPEFKTEEGRKVAAENLKKLGIDALVVIGGDGSYTGAALLAEEG- 117
Query: 196 RRKINVGVVGIPKTVDNDVGIIDRSFGFQTAVEMAQQAISAAHVEAESAVNGIGLVKLMG 255
I V VG+PKT+DND+ D + GF TA+E A +AI + S+ I +V++MG
Sbjct: 118 --GIPV--VGVPKTIDNDISGTDFTIGFDTALETAVEAIDNLR-DTASSHERIFIVEVMG 172
Query: 256 RSTGHIALHATLSSRDVDCCLIPEMEFYLEGKGGLVEFLDN-----RLKENGHAVLVVAE 310
R G +AL A L++ D LIPE L + E + + HA++VVAE
Sbjct: 173 RHAGWLALAAGLAT-GADIILIPEEPADLI----IEELIAEIKAKREARGKKHAIIVVAE 227
Query: 311 GAGQNMIPRTAAQTEERDESGNLVFLDVGSWLKTELKKWWARDHPGELFTVKYIDPTYMI 370
GA + E+G + + L F + ++
Sbjct: 228 GAIDQI-----------GENGAELLAAIEELLAL------------GDFETRVTVLGHIQ 264
Query: 371 RAVPANATDNLYCTLLAHSAIHGVMAGYTGFVSGPINGNYAYIPLEDVAQATNAVNT 427
R +A D + + L +A+ ++ G TG++ G N ++P+++ V +
Sbjct: 265 RGGTPSAFDRVLASRLGAAAVDLLLEGKTGYMVGIRNNKIVHVPIDEAVAPLKMVMS 321
>gnl|CDD|233887 TIGR02483, PFK_mixed, phosphofructokinase. Members of this family
that are characterized, save one, are
phosphofructokinases dependent on pyrophosphate (EC
2.7.1.90) rather than ATP (EC 2.7.1.11). The exception
is one of three phosphofructokinases from Streptomyces
coelicolor. Family members are both bacterial and
archaeal [Energy metabolism,
Glycolysis/gluconeogenesis].
Length = 324
Score = 158 bits (401), Expect = 9e-45
Identities = 112/349 (32%), Positives = 172/349 (49%), Gaps = 38/349 (10%)
Query: 82 RAAIVTCGGLCPGLNTVIRELVVGLWELYGVRQILGIQAGYRGFYSTTRNPLVLNPKMVR 141
R ++T GG CPGLN VIR +V YG +++GI+ G+RG PL L+ + VR
Sbjct: 1 RIGVLTGGGDCPGLNAVIRGVVRRAIAEYG-WEVIGIRDGWRGLLEGDTVPL-LDLEDVR 58
Query: 142 GWHKLGGTVLETSRGG-FD-----LHQIVDAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQ 195
G GGT+L +SR F +IV ++ + + IGGDGT+ A + D+
Sbjct: 59 GILPRGGTILGSSRTNPFKYEEDGDDKIVANLKELGLDALIAIGGDGTLGIARRLADK-- 116
Query: 196 RRKINVGVVGIPKTVDNDVGIIDRSFGFQTAVEMAQQAISAAHVEAESAVNGIGLVKLMG 255
+ VVG+PKT+DND+ D +FGF TAVE+A +A+ H AES + + +V++MG
Sbjct: 117 ----GLPVVGVPKTIDNDLEATDYTFGFDTAVEIATEALDRLHTTAESH-HRVMVVEVMG 171
Query: 256 RSTGHIALHATLSSRDVDCCLIPEMEFYLEGKGGLVEFLDNRLKENGHAVLVVAEGA--- 312
R G IALH+ ++ D LIPE+ F ++ V R K A++VVAEGA
Sbjct: 172 RHAGWIALHSGIAG-GADVILIPEIPFDIDSVCEKVRERFARGKR--FAIVVVAEGAKPK 228
Query: 313 GQNMIPRTAAQTEERDESGNLVFLDVGSWLKTELKKWWARDHPGELFTVKYIDPT---YM 369
G M Q +D G++ +G+WL E+++ T T ++
Sbjct: 229 GGEM----VVQEGVKDAFGHVRLGGIGNWLAEEIER----------RTGIETRATVLGHL 274
Query: 370 IRAVPANATDNLYCTLLAHSAIHGVMAGYTGFVSGPINGNYAYIPLEDV 418
R +A D + T +A+ V G G + + Y+P+ +
Sbjct: 275 QRGGSPSAFDRVLATRFGVAAVDLVHEGQFGHMVALRGTDIVYVPIAEA 323
>gnl|CDD|235111 PRK03202, PRK03202, 6-phosphofructokinase; Provisional.
Length = 320
Score = 135 bits (344), Expect = 2e-36
Identities = 75/244 (30%), Positives = 120/244 (49%), Gaps = 33/244 (13%)
Query: 82 RAAIVTCGGLCPGLNTVIRELV-----VGLWELYGVRQILGIQAGYRGFYSTTRNPLVLN 136
R ++T GG PG+N IR +V G E+YG+ GY G + + L+
Sbjct: 3 RIGVLTSGGDAPGMNAAIRAVVRTAISEG-LEVYGIYD------GYAGLL--EGDIVKLD 53
Query: 137 PKMVRGWHKLGGTVLETSR-GGFDLH----QIVDAIQTNAFNQVYIIGGDGTMRGAVEIF 191
K V GGT+L ++R F + ++ ++ + + +IGGDG+ GA +
Sbjct: 54 LKSVSDIINRGGTILGSARFPEFKDEEGRAKAIENLKKLGIDALVVIGGDGSYMGAKRLT 113
Query: 192 DEIQRRKINVGVVGIPKTVDNDVGIIDRSFGFQTAVEMAQQAISAAHVEAESAVNGIGLV 251
+ + V+G+P T+DND+ D + GF TA+ A +AI A S + +V
Sbjct: 114 EH------GIPVIGLPGTIDNDIAGTDYTIGFDTALNTAVEAIDRLRDTASSH-ERVFIV 166
Query: 252 KLMGRSTGHIALHATLSSRDVDCCLIPEMEFYLEGKGGLVEFLDNRLKENG--HAVLVVA 309
++MGR G +ALHA ++ + LIPE+ F +E L + +E G HA++VVA
Sbjct: 167 EVMGRHAGDLALHAGIAG-GAEVILIPEVPFDIE---ELCAKIKKG-RERGKKHAIIVVA 221
Query: 310 EGAG 313
EG
Sbjct: 222 EGVM 225
>gnl|CDD|184487 PRK14071, PRK14071, 6-phosphofructokinase; Provisional.
Length = 360
Score = 124 bits (313), Expect = 7e-32
Identities = 81/251 (32%), Positives = 128/251 (50%), Gaps = 31/251 (12%)
Query: 78 PKNTRAAIVTCGGLCPGLNTVIRELVVGLWELYGVRQILGIQAGYRGFYSTTRNPLVLNP 137
+ R I+T GG C GLN VIR +V YG +++GI+ +G + + L+
Sbjct: 2 GEKKRIGILTSGGDCAGLNAVIRAVVHRARGTYGW-EVIGIRDATQGLMARPPQYIELDL 60
Query: 138 KMVRGWHKLGGTVLETSRGG----FDL---------HQIVDAIQTNAFNQVYIIGGDGTM 184
V ++GGT+L T+ G F + +I+D + + + IGGDG++
Sbjct: 61 DQVDDLLRMGGTILGTTNKGDPFAFPMPDGSLRDRSQEIIDGYHSLGLDALIGIGGDGSL 120
Query: 185 RGAVEIFDEIQRR---KINVGVVGIPKTVDNDVGIIDRSFGFQTAVEMAQQAISAAHVEA 241
I RR + + +VGIPKT+DNDVG + S GF TAV +A +A+ H A
Sbjct: 121 A--------ILRRLAQQGGINLVGIPKTIDNDVGATEVSIGFDTAVNIATEALDRLHFTA 172
Query: 242 ESAVNGIGLVKLMGRSTGHIALHATLSSRDVDCCLIPEMEFYLEGKGGLVEFLDNRLKE- 300
S N + ++++MGR GHIAL A ++ D LIPE+ + LE + + + R +E
Sbjct: 173 ASH-NRVMILEVMGRDAGHIALAAGIAG-GADVILIPEIPYTLE---NVCKKIRERQEEG 227
Query: 301 NGHAVLVVAEG 311
++VV+E
Sbjct: 228 KNFCLVVVSEA 238
>gnl|CDD|238216 cd00363, PFK, Phosphofructokinase, a key regulatory enzyme in
glycolysis, catalyzes the phosphorylation of
fructose-6-phosphate to fructose-1,6-biphosphate. The
members belong to PFK family that includes ATP- and
pyrophosphate (PPi)- dependent phosphofructokinases.
Some members evolved by gene duplication and thus have a
large C-terminal/N-terminal extension comprising a
second PFK domain. Generally, ATP-PFKs are allosteric
homotetramers, and PPi-PFKs are dimeric and
nonallosteric except for plant PPi-PFKs which are
allosteric heterotetramers.
Length = 338
Score = 122 bits (307), Expect = 4e-31
Identities = 92/366 (25%), Positives = 155/366 (42%), Gaps = 60/366 (16%)
Query: 82 RAAIVTCGGLCPGLNTVIRELV-----VGLWELYGVRQILGIQAGYRGFYSTTRNPLVLN 136
+ ++T GG PG+N IR +V GL E+YG+ + GY G + L+
Sbjct: 2 KIGVLTSGGDAPGMNAAIRGVVRSAIAEGL-EVYGIYE------GYAGLVEG--DIKELD 52
Query: 137 PKMVRGWHKLGGTVLETSR-------GGFDLHQIVDAIQTNAFNQVYIIGGDGTMRGAVE 189
+ V GGT++ ++R G + + ++ + + + +IGGDG+ GA
Sbjct: 53 WESVSDIINRGGTIIGSARCKEFRTEEGR--AKAAENLKKHGIDALVVIGGDGSYTGADL 110
Query: 190 IFDEIQRRKINVGVVGIPKTVDNDVGIIDRSFGFQTAVEMAQQAISAAHVEAESAVNGIG 249
+ +E + V+G+P T+DND+ D + GF TA++ +AI A S
Sbjct: 111 LTEEWPSKYQGFNVIGLPGTIDNDIKGTDYTIGFDTALKTIVEAIDRIRDTASSH-QRTF 169
Query: 250 LVKLMGRSTGHIALHATLSSRDVDCCLIPEMEFYLEGKGGLVEFLDNRLK---ENG--HA 304
+V++MGR G IAL A L++ D IPE E + + +K E G H
Sbjct: 170 VVEVMGRHCGDIALEAGLAT-GADIIFIPEEPA----ADEWEEEMVDVIKKRRERGKRHG 224
Query: 305 VLVVAEGAGQNMIPRTAAQTEERDESGNLVFLDVGSWLKTELKKWWARDHPGELFTVKYI 364
+++VAEGA + IP+ TE+ + ++ L F +
Sbjct: 225 IVIVAEGAI-DFIPKP--ITEK----------LLAKLVEERLG-----------FDTRAT 260
Query: 365 DPTYMIRAVPANATDNLYCTLLAHSAIHGVMAGYTGFVSGPINGNYAYIPLEDVAQATNA 424
++ R A D + + L A+ ++ G G G N N + + +A N
Sbjct: 261 VLGHVQRGGTPTAFDRILASRLGAEAVELLLEGTGGTPVGIQNLNENQVVRHPLTEAVN- 319
Query: 425 VNTKDH 430
TK
Sbjct: 320 -MTKRV 324
>gnl|CDD|213713 TIGR02482, PFKA_ATP, 6-phosphofructokinase. 6-phosphofructokinase
(EC 2.7.1.11) catalyzes the addition of phosphate from
ATP to fructose 6-phosphate to give fructose
1,6-bisphosphate. This represents a key control step in
glycolysis. This model hits bacterial ATP-dependent
6-phosphofructokinases which lack a beta-hairpin loop
present in TIGR02483 family members. TIGR02483 contains
members that are ATP-dependent as well as members that
are pyrophosphate-dependent. TIGR02477 represents the
pyrophosphate-dependent phosphofructokinase,
diphosphate--fructose-6-phosphate 1-phosphotransferase
(EC 2.7.1.90) [Energy metabolism,
Glycolysis/gluconeogenesis].
Length = 301
Score = 98.6 bits (246), Expect = 5e-23
Identities = 73/252 (28%), Positives = 129/252 (51%), Gaps = 20/252 (7%)
Query: 82 RAAIVTCGGLCPGLNTVIRELVVGLWELYGVRQILGIQAGYRGFYSTTRNPLVLNPKMVR 141
+ I+T GG PG+N IR VV +G ++ GI+ GY+G + PL K V
Sbjct: 1 KIGILTSGGDAPGMNAAIRA-VVRTAIYHGF-EVYGIRRGYKGLINGKIEPL--ESKNVS 56
Query: 142 GWHKLGGTVLETSRG-GFDLHQI----VDAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQR 196
G GGT+L T+R F ++ V+ ++ + +IGGDG+ GA ++++E
Sbjct: 57 GIIHRGGTILGTARCPEFKTEEVREKAVENLKKLGIEGLVVIGGDGSYTGAQKLYEEG-- 114
Query: 197 RKINVGVVGIPKTVDNDVGIIDRSFGFQTAVEMAQQAISAAHVEAESAVNGIGLVKLMGR 256
+ V+G+P T+DND+ D + GF TA+ A+ A S ++++MGR
Sbjct: 115 ---GIPVIGLPGTIDNDIPGTDYTIGFDTALNTIIDAVDKIRDTATSH-ERAFVIEVMGR 170
Query: 257 STGHIALHATLSSRDVDCCLIPEMEFYLEGKGGLVEFLDNRLKENG-HAVLVVAEGAGQN 315
G +AL+A +++ + +IPE ++ ++ L++ L + + H++++VAEG
Sbjct: 171 HAGDLALYAGIAT-GAEIIIIPEFDYDID---ELIQRLKEQHEAGKKHSIIIVAEGNIVG 226
Query: 316 MIPRTAAQTEER 327
A + EE+
Sbjct: 227 SAKEVAKKIEEK 238
>gnl|CDD|109425 pfam00365, PFK, Phosphofructokinase.
Length = 279
Score = 93.2 bits (232), Expect = 2e-21
Identities = 73/246 (29%), Positives = 116/246 (47%), Gaps = 38/246 (15%)
Query: 82 RAAIVTCGGLCPGLNTVIRELV-----VGLWELYGVRQILGIQAGYRGFYSTTRNPLVLN 136
+ ++T GG PG+N IR +V GL E+YG+ + GY G + N L+
Sbjct: 2 KIGVLTSGGDAPGMNAAIRAVVRSAIAEGL-EVYGIYE------GYAGLVAG--NIKQLD 52
Query: 137 PKMVRGWHKLGGTVLETSR-GGFDLHQI----VDAIQTNAFNQVYIIGGDGTMRGAVEIF 191
+ V + GGT + ++R F + + ++ + + + +IGGDG+ GA
Sbjct: 53 WESVSDIIQRGGTFIGSARCPEFREREGRLKAAENLKKHGIDALVVIGGDGSYTGA---- 108
Query: 192 DEIQRRKINVGVVGIPKTVDNDVGIIDRSFGFQTAVEMAQQAISAAHVEAESAVNGIGLV 251
++ + VG+P T+DND+ D + GF TA+ +AI A S +V
Sbjct: 109 -DLLTSEHGFNCVGLPGTIDNDICGTDYTIGFDTALNTIVEAIDRIRDTASSH-QRTFVV 166
Query: 252 KLMGRSTGHIALHATLSSRDVDCCLIPEMEFYLEGKGGLVEFLDNRLKEN-----GHAVL 306
++MGR G +AL A ++ D IPE F+ E L NRLK H ++
Sbjct: 167 EVMGRHCGDLALVAGIAG-GADYIFIPEAPFW-------EEELCNRLKRGRERGKRHNIV 218
Query: 307 VVAEGA 312
+VAEGA
Sbjct: 219 IVAEGA 224
>gnl|CDD|238388 cd00763, Bacterial_PFK, Phosphofructokinase, a key regulatory
enzyme in glycolysis, catalyzes the phosphorylation of
fructose-6-phosphate to fructose-1,6-biphosphate. The
members belong to a subfamily of the PFKA family
(cd00363) and include bacterial ATP-dependent
phosphofructokinases. These are allosrterically
regulated homotetramers; the subunits are of about 320
amino acids.
Length = 317
Score = 89.4 bits (222), Expect = 8e-20
Identities = 74/242 (30%), Positives = 118/242 (48%), Gaps = 29/242 (11%)
Query: 82 RAAIVTCGGLCPGLNTVIRELV-----VGLWELYGVRQILGIQAGYRGFYSTTRNPLVLN 136
R ++T GG PG+N IR +V GL E+YG+R GY G + + + L+
Sbjct: 2 RIGVLTSGGDAPGMNAAIRGVVRSAIAEGL-EVYGIRD------GYAGLIAG--DIVPLD 52
Query: 137 PKMVRGWHKLGGTVLETSR-GGFDLHQI----VDAIQTNAFNQVYIIGGDGTMRGAVEIF 191
V GGT L ++R F + ++ ++ + + + +IGGDG+ GA+ +
Sbjct: 53 RYSVSDIINRGGTFLGSARFPEFKDEEGQAKAIEQLKKHGIDALVVIGGDGSYMGAMRLT 112
Query: 192 DEIQRRKINVGVVGIPKTVDNDVGIIDRSFGFQTAVEMAQQAISAAHVEAESAVNGIGLV 251
+ VG+P T+DND+ D + GF TA+ +AI + S I +V
Sbjct: 113 EH------GFPCVGLPGTIDNDIPGTDYTIGFDTALNTVVEAIDRIRDTSSSH-QRISVV 165
Query: 252 KLMGRSTGHIALHATLSSRDVDCCLIPEMEFYLEGKGGLVEFLDNRLKENGHAVLVVAEG 311
++MGR G IAL A ++ + +IPE EF E ++ R K+ HA++VVAEG
Sbjct: 166 EVMGRHCGDIALAAGIAG-GAEFIVIPEAEFDREEVANRIKAGIERGKK--HAIVVVAEG 222
Query: 312 AG 313
Sbjct: 223 VY 224
>gnl|CDD|180620 PRK06555, PRK06555, pyrophosphate--fructose-6-phosphate
1-phosphotransferase; Validated.
Length = 403
Score = 87.4 bits (217), Expect = 9e-19
Identities = 99/370 (26%), Positives = 159/370 (42%), Gaps = 66/370 (17%)
Query: 82 RAAIVTCGGLCPGLNTVIRELVVGLWELYGVRQILGIQAGYRGFYSTTRNPLVLNPKM-- 139
+ A++T GGL P L++ + L+ E+ +I+ ++GY+G + + + P +
Sbjct: 5 KVALLTAGGLAPCLSSAVGGLIERYTEIAPEVEIIAYRSGYQGLL--LGDSIEITPAVRA 62
Query: 140 -VRGWHKLGGTVLETSR-----------------GGFDLHQIVDAIQTNAFNQVYIIGGD 181
H+ GG+ + SR G L + + + + ++ IGGD
Sbjct: 63 NAGLLHRYGGSPIGNSRVKLTNVADCVKRGLVKEGENPLKVAAERLAADGVDILHTIGGD 122
Query: 182 GTMRGAVEIFDEIQRRKINVGVVGIPKTVDNDVGIIDRSFGFQTAVEMAQQAISAAHVEA 241
T A ++ + ++ VVG+PKT+DNDV I +S G TA E Q A +V
Sbjct: 123 DTNTTAADLAAYLAENGYDLTVVGLPKTIDNDVVPIRQSLGAWTAAE--QGARFFDNVIN 180
Query: 242 ESAVNGIGLV--KLMGRSTGHIALHATLSSR-------------------DVDCCLIPEM 280
E + N L+ ++MGR+ G + + R D+ +PEM
Sbjct: 181 EHSANPRMLIIHEVMGRNCGWLTAATARAYREWLDRQEYVPGFGLSAERWDIHAVYLPEM 240
Query: 281 EFYLEGKGGLVEFLDNRLKENGHAVLVVAEGAGQNMI--PRTAA-QTEERDESGNLVFLD 337
F LE + E L + E G+ + ++EGAG + I AA + +RD G+ V LD
Sbjct: 241 AFDLEAEA---ERLKAVMDEVGNVNIFLSEGAGLDAIVAEMEAAGEEVKRDAFGH-VKLD 296
Query: 338 ---VGSWLKTELKKWWARDHPGELFTVKYIDPTYMIRAVPANATD-NLY--CTLLA-HSA 390
G+W K +A E V+ Y R+ PANA D L LA A
Sbjct: 297 TINPGAWFA----KQFAELLGAEKVMVQ--KSGYFARSAPANAEDLRLIKSMVDLAVECA 350
Query: 391 IHGVMAGYTG 400
+ GV +G G
Sbjct: 351 LRGV-SGVIG 359
>gnl|CDD|240345 PTZ00287, PTZ00287, 6-phosphofructokinase; Provisional.
Length = 1419
Score = 88.9 bits (220), Expect = 1e-18
Identities = 62/201 (30%), Positives = 100/201 (49%), Gaps = 19/201 (9%)
Query: 82 RAAIVTCGGLCPGLNTVIRELVVGLWELYGVR-----QILGIQAGYRGFYSTTRNPLVLN 136
+ I+ GG PG + VI G+++ Y R Q++G G G YS +N + +
Sbjct: 179 KIGIILSGGPAPGGHNVIS----GIYD-YAKRYNEQSQVIGFLGGIDGLYS--KNYVTIT 231
Query: 137 PKMVRGWHKLGG-TVLETSRGGF----DLHQIVDAIQTNAFNQVYIIGGDGTMRGAVEIF 191
++ + LGG +L + RG DL I + + N + IIGGDG+ A I
Sbjct: 232 DSLMNRFRNLGGFNMLWSGRGKVRNKDDLIAIENIVAKLKLNGLVIIGGDGSNSNAALIS 291
Query: 192 DEIQRRKINVGVVGIPKTVDNDVG--IIDRSFGFQTAVEMAQQAISAAHVEAESAVNGIG 249
+ R+I + ++GIPKT+D D+ I+ SFGF TA + + I + ++ N
Sbjct: 292 EYFAERQIPISIIGIPKTIDGDLKSEAIEISFGFDTATKTYSEVIGNLCTDVKTGHNVYH 351
Query: 250 LVKLMGRSTGHIALHATLSSR 270
+V++MGRS H+ L L +R
Sbjct: 352 VVRVMGRSASHVVLECALQTR 372
Score = 38.5 bits (89), Expect = 0.007
Identities = 50/225 (22%), Positives = 92/225 (40%), Gaps = 25/225 (11%)
Query: 62 HVAYHRAGPRKQIFFEPKNT------RAAIVTCGGLCPGLNTVIRELVVGLWELYGVRQI 115
H++Y ++IF + T + IV PG V+ GL+ ++ +
Sbjct: 812 HMSYENKFQIQEIFHDKYATPISFEIKIGIVFLSRQAPGAMNVL----CGLYRR--LKLL 865
Query: 116 LGIQAGYRGFYSTTRNPLVL------NPKMVRGWHKLGGTVLETSRGGFD---LHQIVDA 166
G+ + G Y N ++ + +G +L G E S FD +++ +
Sbjct: 866 KGVCIAFYGLYGLLNNKYIIIDDDNIAKHVNQGGLELTGNSPEHSL--FDKENRNKVCET 923
Query: 167 IQTNAFNQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGIPKTVDNDV--GIIDRSFGFQ 224
+ N + + G + T+ A + + +KI VVGIP T N++ +I+ GF
Sbjct: 924 VTNLQLNGLVMPGSNVTITEAALLAEYFLEKKIPTSVVGIPLTGSNNLIHELIETCVGFD 983
Query: 225 TAVEMAQQAISAAHVEAESAVNGIGLVKLMGRSTGHIALHATLSS 269
++ ++ I +A S ++LMGRS H L L +
Sbjct: 984 SSTKVYASLIGNVLTDAVSMPKYWHFIRLMGRSPSHEVLECALQT 1028
>gnl|CDD|238390 cd00765, Pyrophosphate_PFK, Phosphofructokinase, a key regulatory
enzyme in glycolysis, catalyzes the phosphorylation of
fructose-6-phosphate to fructose-1,6-biphosphate. The
members belong to a subfamily of the PFKA family
(cd00363) and include pyrophosphate-dependent
phosphofructokinases. These are found in bacteria as
well as plants. These may be dimeric nonallosteric
enzymes as in bacteria or allosteric heterotetramers as
in plants.
Length = 550
Score = 81.5 bits (201), Expect = 2e-16
Identities = 60/219 (27%), Positives = 93/219 (42%), Gaps = 28/219 (12%)
Query: 77 EPKNTRAAIVTCGGLCPGLNTVIRELVVGLWELYGVRQILGIQAGYRGFYSTTRNPLVLN 136
+ IV GG PG + VI L L E + G + G G + LN
Sbjct: 69 SAPKLKIGIVLSGGQAPGGHNVISGLFDYLKERAKGSTLYGFKGGPAGILKCDY--IELN 126
Query: 137 PKMVRGWHKLGGTVLETSRGGFDL-----------HQIVDAIQT---NAFNQVYIIGGDG 182
+ ++ + + GGFD+ Q A +T + + +IGGD
Sbjct: 127 AEYIQPYR---------NTGGFDMICSGRTKIETEDQFKQAEETAKKLDLDALVVIGGDD 177
Query: 183 TMRGAVEIFDEIQRRKINVGVVGIPKTVDNDV--GIIDRSFGFQTAVEMAQQAISAAHVE 240
+ A + + + + + V+G+PKT+D D+ I+ SFGF TA ++ + I +
Sbjct: 178 SNTNAALLAENFRSKGLKTRVIGVPKTIDGDLKNKEIETSFGFDTATKIYSELIGNVMRD 237
Query: 241 AESAVNGIGLVKLMGRSTGHIALHATLSSRDVDCCLIPE 279
A S VKLMGRS HIAL L + + C+I E
Sbjct: 238 ARSTGKYWHFVKLMGRSASHIALECALKTHP-NICIISE 275
>gnl|CDD|233884 TIGR02478, 6PF1K_euk, 6-phosphofructokinase, eukaryotic type.
Members of this family are eukaryotic (with one
exception) ATP-dependent 6-phosphofructokinases (EC
2.7.1.11) in which two tandem copies of the
phosphofructokinase are found. Members are found, often
including several isozymes, in animals and fungi and in
the bacterium Propionibacterium acnes KPA171202 (a human
skin commensal).
Length = 746
Score = 75.5 bits (186), Expect = 2e-14
Identities = 63/254 (24%), Positives = 101/254 (39%), Gaps = 15/254 (5%)
Query: 70 PRKQIFFEPKNTRAAIVTCGGLCPGLNTVIRELV-VGLWELYGVRQILGIQAGYRGFYST 128
+K + E R AI+ G G+N R V L + ++ I G+ G
Sbjct: 379 DKKLVPSEASRLRIAIIHVGAPAGGMNAATRSAVRYALARGH---TVIAIHNGFSGL--A 433
Query: 129 TRNPLVLNPKMVRGWHKLGGTVLETSRG--GFDLHQIVDAIQTNAFNQVYIIGGDGTMRG 186
+ L V GW GG+ L T+R G DL I Q + + + IIGG
Sbjct: 434 RHDVRELTWSDVEGWVGEGGSELGTNRSLPGDDLGTIAYYFQQHKIDGLIIIGGFEAFEA 493
Query: 187 AVEIFDEIQRRK---INVGVVGIPKTVDNDVGIIDRSFGFQTAVEMAQQAISAAHVEAES 243
++ R K + +V IP T+ N+V + S G TA+ + A +
Sbjct: 494 LYQLDA--AREKYPAFRIPMVVIPATISNNVPGTEYSLGSDTALNEITEYCDNIKQSASA 551
Query: 244 AVNGIGLVKLMGRSTGHIALHATLSSRDVDCCLIPEMEFYLEGKGGLVEFLDNRLKENGH 303
+ + +V+ MG +G++A A L++ D IPE L+ +E L E
Sbjct: 552 SKRRVFVVETMGGYSGYLATMAGLAT-GADAAYIPEEGISLKDLQEDIEHLKETFAEGRA 610
Query: 304 AVLVV-AEGAGQNM 316
L++ E A +
Sbjct: 611 GKLILRNEKASKVY 624
Score = 67.0 bits (164), Expect = 8e-12
Identities = 73/263 (27%), Positives = 122/263 (46%), Gaps = 45/263 (17%)
Query: 82 RAAIVTCGGLCPGLNTVIRELV-VGLW---ELYGVRQILGIQAGYRGFYSTTRNPLVLNP 137
R A++T GG G+N +R +V + ++ +Y +R+ GY+G N
Sbjct: 2 RIAVLTSGGDAQGMNAAVRAVVRMAIYVGCRVYAIRE------GYQGLVDGGDNIEEAQW 55
Query: 138 KMVRGWHKLGGTVLETSR-GGF-----DLHQIVDAIQTNAFNQVYIIGGDGTMRGA---- 187
+ VRG LGGT++ T+R F L + + V +IGGDG++ GA
Sbjct: 56 EDVRGILSLGGTIIGTARCKEFRERPGRLKAARNLVSNGIDALV-VIGGDGSLTGADLFR 114
Query: 188 -------VEIFD------EIQRRKINVGVVGIPKTVDNDVGIIDRSFGFQTAVEMAQQAI 234
E+ D E ++ +VG+ ++DND+ D + G +A+ +AI
Sbjct: 115 EEWPSLLEELVDTGKITAEQAEEHRHLTIVGLVGSIDNDMCGTDMTIGADSALHRICEAI 174
Query: 235 SAAHVEAESAVNGIGLVKLMGRSTGHIALHATLSSRDVDCCLIPEMEFYLEGKGGLVEFL 294
A A+S +V++MGR G++AL A +++ D IPE + G + L
Sbjct: 175 DAISSTAQSHQRAF-VVEVMGRHCGYLALMAAIAT-GADYVFIPER----PPEEGWEDQL 228
Query: 295 DNRLKENGHA-----VLVVAEGA 312
++LK N A +++VAEGA
Sbjct: 229 CHKLKRNRKAGKRKTIVIVAEGA 251
>gnl|CDD|237600 PRK14072, PRK14072, 6-phosphofructokinase; Provisional.
Length = 416
Score = 74.5 bits (184), Expect = 2e-14
Identities = 63/269 (23%), Positives = 109/269 (40%), Gaps = 37/269 (13%)
Query: 178 IGGDGTMRGAVEIFDEIQRRKINVGVVGIPKTVDNDVGIIDRSFGFQTAVEMAQQAISAA 237
GG+ +M A+++ ++ + +GIPKT+DND+ D GF +A + ++ A
Sbjct: 110 NGGNDSMDTALKVSQLAKKMGYPIRCIGIPKTIDNDLPGTDHCPGFGSAAKYIATSVLEA 169
Query: 238 HVEAESAVNG--IGLVKLMGRSTGHIALHATLSSRDVDCC----LIPEMEFYLEGKGGLV 291
++ + N + ++++MGR G +A A L+ ++ D +PE F E
Sbjct: 170 ALDVAAMANTSKVFILEVMGRHAGWLAAAAALAKQNPDDAPHLIYLPERPFDEE------ 223
Query: 292 EFL---DNRLKENGHAVLVVAEG---AGQNMIPRTAAQTEERDESGNLVFLDVGSWLKTE 345
+FL +K G+ V+VV+EG A I A D G+ V L
Sbjct: 224 KFLADVRAIVKRYGYCVVVVSEGIRDADGKFI---AEAGLAEDAFGHAQLGGVAPVLANL 280
Query: 346 LKKWWARDHPGELFTVKYIDPTYMIRAVP--ANATDNLYCTLLAHSAIHGVMAGYTGFVS 403
+K+ V + Y+ RA A+ TD + +A+ +AG G +
Sbjct: 281 IKE--KLGKK-----VHWAVLDYLQRAARHIASKTDVEEAYAVGKAAVEYALAGKNGVMP 333
Query: 404 G-------PINGNYAYIPLEDVAQATNAV 425
P +PL VA +
Sbjct: 334 AIRRTSDDPYKWKIGLVPLSKVANKEKKM 362
>gnl|CDD|238389 cd00764, Eukaryotic_PFK, Phosphofructokinase, a key regulatory
enzyme in glycolysis, catalyzes the phosphorylation of
fructose-6-phosphate to fructose-1,6-biphosphate. The
members belong to a subfamily of the PFKA family
(cd00363) and include eukaryotic ATP-dependent
phosphofructokinases. These have evolved from the
bacterial PFKs by gene duplication and fusion events and
exhibit complex allosteric behavior.
Length = 762
Score = 74.5 bits (183), Expect = 3e-14
Identities = 60/228 (26%), Positives = 92/228 (40%), Gaps = 10/228 (4%)
Query: 77 EPKNTRAAIVTCGGLCPGLNTVIRELVVGLWELYGVRQILGIQAGYRGFYSTTRNPLV-L 135
E N AIV G G+N +R V YG+ A Y GF + +V L
Sbjct: 386 EKTNLNIAIVNVGAPAAGMNAAVRSAV-----RYGLAHGHRPYAIYDGFEGLAKGQIVEL 440
Query: 136 NPKMVRGWHKLGGTVLETSR--GGFDLHQIVDAIQTNAFNQVYIIGGDGTMRGAVEIFDE 193
V GW GG+ L T R DL I Q + + I+GG +G +++ +
Sbjct: 441 GWIDVGGWTGRGGSELGTKRTLPKKDLETIAYNFQKYGIDGLIIVGGFEAYKGLLQLREA 500
Query: 194 IQRRKI-NVGVVGIPKTVDNDVGIIDRSFGFQTAVEMAQQAISAAHVEAESAVNGIGLVK 252
++ + + +V IP TV N+V D S G TA+ + A + +V+
Sbjct: 501 REQYEEFCIPMVLIPATVSNNVPGTDFSLGSDTALNALMKYCDRIKQSASGTKRRVFIVE 560
Query: 253 LMGRSTGHIALHATLSSRDVDCCLIPEMEFYLEGKGGLVEFLDNRLKE 300
MG G++A L+ D + E F + VE L ++K
Sbjct: 561 TMGGYCGYLATMTGLAV-GADAAYVFEEPFNIRDLQENVEHLTEKMKT 607
Score = 67.9 bits (166), Expect = 5e-12
Identities = 66/280 (23%), Positives = 126/280 (45%), Gaps = 54/280 (19%)
Query: 84 AIVTCGGLCPGLNTVIRELV-VGLWELYGVRQILGIQAGYRGFYSTTRNPLVLNPKMVRG 142
A++T GG G+N +R +V +G++ G + + + GY G + V
Sbjct: 7 AVLTSGGDAQGMNAAVRAVVRMGIY--VGAK-VFFVYEGYEGLVKGGDYIKQAEWESVSN 63
Query: 143 WHKLGGTVLETSR------------GGFDLHQIVDAIQTNAFNQVYIIGGDGTMRGAVEI 190
W + GGT++ ++R ++L + TN + +IGGDG++ GA ++
Sbjct: 64 WLQEGGTIIGSARCKEFREREGRLQAAYNL---IQRGITN----LCVIGGDGSLTGA-DL 115
Query: 191 F--------DEIQRR-KIN---------VGVVGIPKTVDNDVGIIDRSFGFQTAVEMAQQ 232
F +E+ + KI + +VG+ ++DND D + G +A+ +
Sbjct: 116 FRSEWPSLLEELVKDGKITEEEVAKYQHLNIVGMVGSIDNDFCGTDMTIGTDSALHRICE 175
Query: 233 AISAAHVEAESAVNGIGLVKLMGRSTGHIALHATLSSRDVDCCLIPEMEFYLEGKGGLVE 292
+ A A+S ++++MGR G++AL + L++ D IPE + G +
Sbjct: 176 VVDAITTTAQSHQRTF-VLEVMGRHCGYLALVSGLAT-GADWIFIPER----PPEDGWED 229
Query: 293 FLDNRLKENGH-----AVLVVAEGA-GQNMIPRTAAQTEE 326
+ RL E+ +++VAEGA + P T+ ++
Sbjct: 230 QMCRRLSEHRSRGKRLNIIIVAEGAIDDQLKPITSEDVKD 269
>gnl|CDD|235930 PRK07085, PRK07085, diphosphate--fructose-6-phosphate
1-phosphotransferase; Provisional.
Length = 555
Score = 69.6 bits (171), Expect = 1e-12
Identities = 43/140 (30%), Positives = 65/140 (46%), Gaps = 17/140 (12%)
Query: 156 GGFDL--------------HQIVDAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQRRKINV 201
GGFD+ ++ ++ + + IIGGD + A + + +
Sbjct: 135 GGFDMIGSGRTKIETEEQKEACLETVKKLKLDGLVIIGGDDSNTNAAILAEYFAKHGCKT 194
Query: 202 GVVGIPKTVDNDV--GIIDRSFGFQTAVEMAQQAISAAHVEAESAVNGIGLVKLMGRSTG 259
V+G+PKT+D D+ I+ SFGF TA + + I +A SA +KLMGRS
Sbjct: 195 QVIGVPKTIDGDLKNEFIETSFGFDTATKTYSEMIGNISRDALSAKKYWHFIKLMGRSAS 254
Query: 260 HIALHATLSSRDVDCCLIPE 279
HIAL L + + CLI E
Sbjct: 255 HIALECALQTHP-NICLISE 273
>gnl|CDD|131530 TIGR02477, PFKA_PPi, diphosphate--fructose-6-phosphate
1-phosphotransferase. Diphosphate--fructose-6-phosphate
1-phosphotransferase catalyzes the addition of phosphate
from diphosphate (PPi) to fructose 6-phosphate to give
fructose 1,6-bisphosphate (EC 2.7.1.90). The enzyme is
also known as pyrophosphate-dependent
phosphofructokinase. The usage of PPi-dependent enzymes
in glycolysis presumably frees up ATP for other
processes. TIGR02482 represents the ATP-dependent
6-phosphofructokinase enzyme contained within Pfam
pfam00365: Phosphofructokinase. This model hits
primarily bacterial, plant alpha, and plant beta
sequences [Energy metabolism,
Glycolysis/gluconeogenesis].
Length = 539
Score = 69.3 bits (170), Expect = 1e-12
Identities = 60/223 (26%), Positives = 98/223 (43%), Gaps = 36/223 (16%)
Query: 77 EPKNTRAAIVTCGGLCPGLNTVIRELVVGLWELYGVRQILGIQAGYRG--FYSTTRNPLV 134
E + + ++ GG PG + VI GL++ ++ Y PL
Sbjct: 64 EHQPLKIGVILSGGQAPGGHNVI----SGLFD--------ALKKLNPNSKLYGFIGGPLG 111
Query: 135 LNPKMVRGWHKLGGTVLETSR--GGFDL-----------HQIVDAIQT---NAFNQVYII 178
L + + +L +++T R GGFD+ Q A+ T + + II
Sbjct: 112 L---LDNNYVELTKELIDTYRNTGGFDIIGSGRTKIETEEQFAKALTTAKKLKLDGLVII 168
Query: 179 GGDGTMRGAVEIFDEIQRRKINVGVVGIPKTVDNDVG--IIDRSFGFQTAVEMAQQAISA 236
GGD + A + + + + V+G+PKT+D D+ I+ SFGF TA ++ + I
Sbjct: 169 GGDDSNTNAALLAEYFAKHGLKTQVIGVPKTIDGDLKNQFIETSFGFDTACKIYSELIGN 228
Query: 237 AHVEAESAVNGIGLVKLMGRSTGHIALHATLSSRDVDCCLIPE 279
+A SA ++LMGRS HIAL L + + C+I E
Sbjct: 229 ICRDALSAKKYWHFIRLMGRSASHIALECALQTHP-NVCIIGE 270
>gnl|CDD|185647 PTZ00468, PTZ00468, phosphofructokinase family protein;
Provisional.
Length = 1328
Score = 67.3 bits (164), Expect = 7e-12
Identities = 56/201 (27%), Positives = 87/201 (43%), Gaps = 19/201 (9%)
Query: 82 RAAIVTCGGLCPGLNTVIRELVVGLWELYGVRQILGIQAGYRGFYSTTRNPLVLNPKMVR 141
R +V GG G + VI L+ + Q+ G G G Y + L +
Sbjct: 104 RIGVVLSGGQASGGHNVIAGLMSYIKLCNQSSQLFGFLGGPEGVY--SERYRELTEDDIN 161
Query: 142 GWHKLGG-TVLETSRGGFDLHQIVDAIQTNA---------FNQVYIIGGDGTMRGAVEIF 191
G GG ++ + R H+I Q A + + +IGGD + A +
Sbjct: 162 GILNQGGFNIICSGR-----HKIETEEQMRASLEICEKLKLHGLVVIGGDDSNTNAAVLA 216
Query: 192 DEIQRRKINVGVVGIPKTVDNDVG--IIDRSFGFQTAVEMAQQAISAAHVEAESAVNGIG 249
+ +R + VVG PKT+D D+ +I+ SFG+ TAV+ + I + ++ G
Sbjct: 217 EYFKRNSSSTVVVGCPKTIDGDLKNEVIETSFGYDTAVKTYSEQIGSIMDAIKTEGYGYY 276
Query: 250 LVKLMGRSTGHIALHATLSSR 270
V+LMGRS HI L L +R
Sbjct: 277 FVRLMGRSASHITLECGLQTR 297
Score = 29.9 bits (67), Expect = 3.1
Identities = 18/84 (21%), Positives = 39/84 (46%), Gaps = 3/84 (3%)
Query: 198 KINVGVVGIPKTVDNDVG--IIDRSFGFQTAVEMAQQAISAAHVEAESAVNGIGLVKLMG 255
K + VV +P ++N + +I+ GF + + + ++ SA +K++G
Sbjct: 832 KSEIPVVFVPVCLENSISHQMIETCIGFDSVTKSISTLVGNLLTDSASATKYWYFMKMIG 891
Query: 256 RSTGHIALHATLSSRDVDCCLIPE 279
T ++AL + + + +IPE
Sbjct: 892 DKTSNVALEVGIQTHP-NLVVIPE 914
>gnl|CDD|215543 PLN03028, PLN03028, pyrophosphate--fructose-6-phosphate
1-phosphotransferase; Provisional.
Length = 610
Score = 60.9 bits (148), Expect = 6e-10
Identities = 62/237 (26%), Positives = 94/237 (39%), Gaps = 46/237 (19%)
Query: 59 PRVH-VAYHRAGPRKQIFFEPKNTRAAIVTCGGLCPGLNTVIRELVVGLWELYGVRQI-- 115
P H + P Q+ E R +V CG PG + VI W L+ +
Sbjct: 57 PLAHFLRATAKVPDAQVITEHPAVRVGVVFCGRQSPGGHNVI-------WGLHDALKAHN 109
Query: 116 -----LGIQAGYRGFYSTTRNPLVLNPKMVRGWHKLGGTVLETSR--GGFDL-----HQI 163
LG G G ++ K + ++ VL T + GG+DL QI
Sbjct: 110 PNSVLLGFLGGTEGLFAQ---------KTL----EITDDVLSTYKNQGGYDLLGRTKDQI 156
Query: 164 VDAIQTNA---------FNQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGIPKTVDNDV 214
Q NA + + IIGG + A ++ + K VVG+P T++ D+
Sbjct: 157 RTTEQVNAALAACEALKLDGLVIIGGVTSNTDAAQLAETFAEAKCKTKVVGVPVTLNGDL 216
Query: 215 G--IIDRSFGFQTAVEMAQQAISAAHVEAESAVNGIGLVKLMGRSTGHIALHATLSS 269
++ + GF T ++ Q IS +A SA ++LMGR H+AL L S
Sbjct: 217 KNQFVETNVGFDTICKVNSQLISNVCTDALSAEKYYYFIRLMGRKASHVALECALQS 273
>gnl|CDD|215140 PLN02251, PLN02251, pyrophosphate-dependent phosphofructokinase.
Length = 568
Score = 56.3 bits (136), Expect = 2e-08
Identities = 35/131 (26%), Positives = 59/131 (45%), Gaps = 16/131 (12%)
Query: 155 RGGFDL--------------HQIVDAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQRRKIN 200
+GGFD+ Q + + + +IGGD + A + + + + +
Sbjct: 160 QGGFDMICSGRDKIETPEQFKQAEETATKLDLDGLVVIGGDDSNTNACLLAEYFRAKNLK 219
Query: 201 VGVVGIPKTVDNDVGI--IDRSFGFQTAVEMAQQAISAAHVEAESAVNGIGLVKLMGRST 258
V+G PKT+D D+ + SFGF TA ++ + I ++A S V+LMGR+
Sbjct: 220 TRVIGCPKTIDGDLKSKEVPTSFGFDTACKIYSEMIGNVMIDARSTGKYYHFVRLMGRAA 279
Query: 259 GHIALHATLSS 269
HI L L +
Sbjct: 280 SHITLECALQT 290
>gnl|CDD|199895 cd06167, LabA_like, LabA_like proteins. A well conserved group of
domains found in all three kingdoms of life, with no
defined function. LabA, a member from Synechococcus
elongatus PCC 7942, has been shown to play a role in
cyanobacterial circadian timing. It is required for
negative feedback regulation of the
autokinase/autophosphatase KaiC, a central component of
the circadian clock system. In particular, LabA seems
necessary for KaiC-dependent repression of gene
expression. Another member is the N-terminal domain of
limkain b1, a human autoantigen associated with
cytoplasmic vesicles. Curiously, a gene labeled NicB
from Pseudomonas putida S16, which is described as a
putative NADH-dependent hydroxylase involved in the
microbial degradation of nicotine also falls in the
LabA_like family. LabA_like domains exhibit some
similarity to the NYN domain, a distant relative of the
PIN-domain nucleases.
Length = 151
Score = 33.6 bits (77), Expect = 0.082
Identities = 16/102 (15%), Positives = 34/102 (33%), Gaps = 13/102 (12%)
Query: 122 YRGFYSTTRNPLVLNPKMVRGWHKLGGTVLETSRGGFDLHQ----------IVDAIQTNA 171
R +Y+T R + +LG V+ R + ++
Sbjct: 43 ARAYYNTARPDPSSPDRFQEALRRLGFEVIRVPRLRGKGEEKGVDVALALDALELAYERR 102
Query: 172 FNQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGIPKTVDND 213
+ + ++ GD +E ++ R V VVG ++ +
Sbjct: 103 IDTIVLVSGDSDFVPLLE---RLRERGKRVIVVGFRRSASSA 141
>gnl|CDD|216543 pfam01513, NAD_kinase, ATP-NAD kinase. Members of this family
include ATP-NAD kinases EC:2.7.1.23, which catalyzes the
phosphorylation of NAD to NADP utilising ATP and other
nucleoside triphosphates as well as inorganic
polyphosphate as a source of phosphorus. Also includes
NADH kinases EC:2.7.1.86.
Length = 243
Score = 31.9 bits (73), Expect = 0.51
Identities = 8/44 (18%), Positives = 18/44 (40%), Gaps = 5/44 (11%)
Query: 164 VDAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGIP 207
+ + + ++GGDGT A + ++ ++GI
Sbjct: 28 TREMVEEGVDLIVVLGGDGTALDAARLLG-----DHDIPILGIN 66
>gnl|CDD|237025 PRK11929, PRK11929, putative bifunctional
UDP-N-acetylmuramoylalanyl-D-glutamate--2,
6-diaminopimelate
ligase/UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-
alanine ligase; Provisional.
Length = 958
Score = 32.0 bits (73), Expect = 0.77
Identities = 22/94 (23%), Positives = 33/94 (35%), Gaps = 17/94 (18%)
Query: 228 EMAQQAISAAHVEAESAVNGIGLVKLMGRSTGHIALHATLS---SRD-VDCCLIPEMEFY 283
M A +EA S GL GR + + +RD +D M+ Y
Sbjct: 174 RMRAAGADAVAMEASS----HGLE--QGR-LDGLRIAVAGFTNLTRDHLDYHG--TMQDY 224
Query: 284 LEGKGGLVEFLDNRLKENGHAVLVVAEGAGQNMI 317
E K L +L G AV+ + A ++
Sbjct: 225 EEAKAALFS----KLPGLGAAVINADDPAAARLL 254
>gnl|CDD|131903 TIGR02856, spore_yqfC, sporulation protein YqfC. This small
protein, designated YqfC in Bacillus subtilis, is both
restricted to and universal in sporulating species of
the Firmcutes, such as Bacillus subtilis and Clostridium
perfringens. It is part of the sigma(E)-controlled
regulon, and its mutation leads to a sporulation defect
[Cellular processes, Sporulation and germination].
Length = 85
Score = 28.8 bits (65), Expect = 1.2
Identities = 10/26 (38%), Positives = 12/26 (46%)
Query: 276 LIPEMEFYLEGKGGLVEFLDNRLKEN 301
LI Y+E GLV F +K N
Sbjct: 24 LIGNEHIYIENHRGLVVFSPEEVKLN 49
>gnl|CDD|241003 cd12559, RRM_SRSF10, RNA recognition motif in serine/arginine-rich
splicing factor 10 (SRSF10) and similar proteins. This
subgroup corresponds to the RRM of SRSF10, also termed
40 kDa SR-repressor protein (SRrp40), or FUS-interacting
serine-arginine-rich protein 1 (FUSIP1), or splicing
factor SRp38, or splicing factor, arginine/serine-rich
13A (SFRS13A), or TLS-associated protein with Ser-Arg
repeats (TASR). SRSF10 is a serine-arginine (SR) protein
that acts as a potent and general splicing repressor
when dephosphorylated. It mediates global inhibition of
splicing both in M phase of the cell cycle and in
response to heat shock. SRSF10 emerges as a modulator of
cholesterol homeostasis through the regulation of
low-density lipoprotein receptor (LDLR) splicing
efficiency. It also regulates cardiac-specific
alternative splicing of triadin pre-mRNA and is required
for proper Ca2+ handling during embryonic heart
development. In contrast, the phosphorylated SRSF10
functions as a sequence-specific splicing activator in
the presence of a nuclear cofactor. It activates distal
alternative 5' splice site of adenovirus E1A pre-mRNA in
vivo. Moreover, SRSF10 strengthens pre-mRNA recognition
by U1 and U2 snRNPs. SRSF10 localizes to the nuclear
speckles and can shuttle between nucleus and cytoplasm.
It contains a single N-terminal RNA recognition motif
(RRM), also termed RBD (RNA binding domain) or RNP
(ribonucleoprotein domain), followed by a C-terminal RS
domain rich in serine-arginine dipeptides. .
Length = 84
Score = 28.8 bits (64), Expect = 1.5
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 410 YAYIPLEDVAQATNAVNTKDHKWAWVRTVTNQ 441
+AY+ EDV A +A++ D KW R + Q
Sbjct: 44 FAYVQFEDVRDAEDALHNLDRKWICGRQIEIQ 75
>gnl|CDD|198358 cd07781, FGGY_RBK, Ribulokinases; belongs to the FGGY family of
carbohydrate kinases. This subgroup is predominantly
composed of bacterial ribulokinases (RBK) which catalyze
the MgATP-dependent phosphorylation of L(or D)-ribulose
to produce L(or D)-ribulose 5-phosphate and ADP. RBK
also phosphorylates a variety of other sugar substrates
including ribitol and arabitol. The reason why L-RBK can
phosphorylate so many different substrates is not yet
clear. The presence of Mg2+ is required for catalytic
activity. This group belongs to the FGGY family of
carbohydrate kinases, the monomers of which contain two
large domains, which are separated by a deep cleft that
forms the active site. This model includes both the
N-terminal domain, which adopts a ribonuclease H-like
fold, and the structurally related C-terminal domain.
Length = 498
Score = 30.7 bits (70), Expect = 1.5
Identities = 15/60 (25%), Positives = 22/60 (36%), Gaps = 13/60 (21%)
Query: 217 IDRSFGFQTAVEMAQQ-------AISAAHVEAESAVNGIG-----LVKLMGRSTGHIALH 264
G + E A + A++ +A G G LVK++G ST I L
Sbjct: 242 SGEKAGGLSP-EWAARLGLPEGIAVAVGAFDAHMGAVGAGAEPGTLVKVIGTSTCDIMLA 300
>gnl|CDD|235221 PRK04123, PRK04123, ribulokinase; Provisional.
Length = 548
Score = 30.6 bits (70), Expect = 2.0
Identities = 20/63 (31%), Positives = 25/63 (39%), Gaps = 13/63 (20%)
Query: 213 DVGIIDRSFGFQTAVEMAQQ-------AISAAHVEAESAVNGIG-----LVKLMGRSTGH 260
+ G TA E AQ+ A+S +A G G LVK+MG ST
Sbjct: 241 ETWTAGEPAGTLTA-EWAQRLGLPEGVAVSVGAFDAHMGAVGAGAEPGTLVKVMGTSTCD 299
Query: 261 IAL 263
I L
Sbjct: 300 ILL 302
>gnl|CDD|239495 cd03401, Band_7_prohibitin, Band_7_prohibitin. A subgroup of the
band 7 domain of flotillin (reggie) like proteins. This
subgroup group includes proteins similar to prohibitin
(a lipid raft-associated integral membrane protein).
Individual proteins of this band 7 domain family may
cluster to form membrane microdomains which may in turn
recruit multiprotein complexes. These microdomains in
addition to being stable scaffolds may also be also
dynamic units with their own regulatory functions.
Prohibitin is a mitochondrial inner-membrane protein
which may act as a chaperone for the stabilization of
mitochondrial proteins. Human prohibitin forms a
heter-oligomeric complex with Bap-37 (prohibitin 2, a
band 7 domain carrying homologue). This complex may
protect non-assembled membrane proteins against
proteolysis by the m-AAA protease. Prohibitin and Bap-37
yeast homologues have been implicated in yeast longevity
and, in the maintenance of mitochondrial morphology.
Length = 196
Score = 29.5 bits (67), Expect = 2.3
Identities = 22/87 (25%), Positives = 31/87 (35%), Gaps = 31/87 (35%)
Query: 183 TMRGAV--EIFDEIQRRKINVGVVGIPKTVDNDVGIIDRSFG--FQTAVEM--------- 229
T R V I + + R + G++ +D DV I +F F AVE
Sbjct: 116 TQREEVSALIREALTERAKDFGII-----LD-DVSITHLTFSKEFTKAVEAKQVAQQEAE 169
Query: 230 ------------AQQAISAAHVEAESA 244
Q A+ A EAE+A
Sbjct: 170 RAKFVVEKAEQEKQAAVIRAEGEAEAA 196
>gnl|CDD|237601 PRK14076, pnk, inorganic polyphosphate/ATP-NAD kinase; Provisional.
Length = 569
Score = 30.1 bits (68), Expect = 2.8
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 11/63 (17%)
Query: 145 KLGGTVLETSRGGFDLHQIVDAIQTNAFNQVYIIGGDGTMRGAVEIFD--EIQRRKINVG 202
KL + E D+ +I + + IGGDGT+ A ++ + EI IN+G
Sbjct: 331 KLKNRLNEECNLIDDIEEI---------SHIISIGGDGTVLRASKLVNGEEIPIICINMG 381
Query: 203 VVG 205
VG
Sbjct: 382 TVG 384
>gnl|CDD|224896 COG1985, RibD, Pyrimidine reductase, riboflavin biosynthesis
[Coenzyme metabolism].
Length = 218
Score = 29.2 bits (66), Expect = 3.9
Identities = 14/62 (22%), Positives = 27/62 (43%), Gaps = 4/62 (6%)
Query: 136 NPKMVRGWHKLGGTVLETSRGGFDLHQIVDAIQTNAFNQVYIIGGDGTMRGAV---EIFD 192
+ +R + G V+ G DL +++ + N V + GG T+ G+ + D
Sbjct: 107 PEEKLRELKEAGVEVILLPDGRVDLAALLEELAERGINSVLVEGG-ATLNGSFLEAGLVD 165
Query: 193 EI 194
E+
Sbjct: 166 EL 167
>gnl|CDD|149648 pfam08662, eIF2A, Eukaryotic translation initiation factor eIF2A.
This is a family of eukaryotic translation initiation
factors.
Length = 194
Score = 28.8 bits (65), Expect = 4.3
Identities = 9/35 (25%), Positives = 19/35 (54%)
Query: 166 AIQTNAFNQVYIIGGDGTMRGAVEIFDEIQRRKIN 200
I + F ++ ++ G G + G +E +D ++KI
Sbjct: 105 TIFWSPFGRLVLLAGFGNLAGQIEFWDVKNKKKIA 139
>gnl|CDD|130188 TIGR01118, lacA, galactose-6-phosphate isomerase, LacA subunit.
This family contains members from low GC gram-positive
bacteria. Galactose-6-phosphate isomerase is involved in
lactose catabolism by the tagatose-6-phosphate pathway
[Energy metabolism, Biosynthesis and degradation of
polysaccharides].
Length = 141
Score = 28.0 bits (62), Expect = 5.2
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 290 LVEFLDNRLKENGHAVLVVAEGAGQNMIPRTAAQTEE-RDESGNL 333
L + + N L +NG V+ V EG GQ+ + T A E + + NL
Sbjct: 14 LKDVIKNFLVDNGFEVIDVTEGDGQDFVDVTLAVASEVQKDEQNL 58
>gnl|CDD|185145 PRK15223, PRK15223, pilin outer membrane usher protein SafC;
Provisional.
Length = 836
Score = 29.2 bits (65), Expect = 5.5
Identities = 19/76 (25%), Positives = 31/76 (40%), Gaps = 10/76 (13%)
Query: 18 PLDQNRFFHPSHGFYVSPSDVILRQ---IVYDLSSACGAF-------SDSDPRVHVAYHR 67
P + +F G + + V ++Q +Y+ + A G F +DS +HV
Sbjct: 267 PYSERQFAPVVRGIARTQARVEVKQNGYTIYNTTVAPGPFALRDLSVTDSSGDLHVTVWE 326
Query: 68 AGPRKQIFFEPKNTRA 83
A Q+F P T A
Sbjct: 327 ADGSTQMFVVPYQTPA 342
>gnl|CDD|180721 PRK06837, PRK06837, acetylornithine deacetylase; Provisional.
Length = 427
Score = 28.8 bits (65), Expect = 5.7
Identities = 22/63 (34%), Positives = 28/63 (44%), Gaps = 5/63 (7%)
Query: 257 STGHIALHATLSSRDVDCCLIPEMEFY--LEGKGGLVEFLDNRLKENGHAVLVVAEGAGQ 314
STG+ AL D CLIPE + + G++ F RL+ G V V G G
Sbjct: 174 STGNGALSTLQRGYRADACLIPEPTGEKLVRAQVGVIWF---RLRVRGAPVHVREAGTGA 230
Query: 315 NMI 317
N I
Sbjct: 231 NAI 233
>gnl|CDD|236777 PRK10857, PRK10857, DNA-binding transcriptional regulator IscR;
Provisional.
Length = 164
Score = 27.5 bits (61), Expect = 9.0
Identities = 32/110 (29%), Positives = 45/110 (40%), Gaps = 35/110 (31%)
Query: 243 SAVNGIGLVKLMGRSTGHIALHATLSSRD--VDC--CLIPEMEFYLEGKGG--------- 289
S+V G G L+G+ IA+ +S+ D VD C +GKGG
Sbjct: 56 SSVRGPGGGYLLGKDASSIAVGEVISAVDESVDATRC---------QGKGGCQGGDKCLT 106
Query: 290 ----------LVEFLDN-RLKE--NGHAVLVVAEGAGQNMIPRTAAQTEE 326
L FL+N L E N VL V+ + PRTA +T++
Sbjct: 107 HALWRDLSDRLTGFLNNITLGELVNNQEVLDVSGRQHTHDAPRTAGRTQD 156
>gnl|CDD|238835 cd01672, TMPK, Thymidine monophosphate kinase (TMPK), also known as
thymidylate kinase, catalyzes the phosphorylation of
thymidine monophosphate (TMP) to thymidine diphosphate
(TDP) utilizing ATP as its preferred phophoryl donor.
TMPK represents the rate-limiting step in either de novo
or salvage biosynthesis of thymidine triphosphate (TTP).
Length = 200
Score = 27.6 bits (62), Expect = 9.6
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 286 GKGGLVEFLDNRLKENGHAVLVVAE 310
GK L+E L RL+ G+ V++ E
Sbjct: 12 GKTTLIELLAERLEARGYEVVLTRE 36
>gnl|CDD|161732 TIGR00147, TIGR00147, lipid kinase, YegS/Rv2252/BmrU family. The
E. coli member of this family, YegS has been purified
and shown to have phosphatidylglycerol kinase activity.
The member from M. tuberculosis, Rv2252, has
diacylglycerol kinase activity. BmrU from B. subtilis is
in an operon with multidrug efflux transporter Bmr, but
is uncharacterized [Unknown function, Enzymes of unknown
specificity].
Length = 293
Score = 28.2 bits (63), Expect = 9.6
Identities = 19/90 (21%), Positives = 35/90 (38%), Gaps = 14/90 (15%)
Query: 153 TSRGGFDLHQIVDAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQRRK----INVG------ 202
T G + +A + + V GGDGT+ V ++ + +G
Sbjct: 40 TWEKGDAARYVEEARK-FGVDTVIAGGGDGTINEVVNALIQLDDIPALGILPLGTANDFA 98
Query: 203 -VVGIPKTVDNDVGIIDRSFGFQTAVEMAQ 231
+GIP+ +D ++ G A++M Q
Sbjct: 99 RSLGIPEDLDKAAKLVIA--GDARAIDMGQ 126
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.321 0.138 0.422
Gapped
Lambda K H
0.267 0.0736 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 23,259,770
Number of extensions: 2307365
Number of successful extensions: 2232
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2147
Number of HSP's successfully gapped: 56
Length of query: 447
Length of database: 10,937,602
Length adjustment: 100
Effective length of query: 347
Effective length of database: 6,502,202
Effective search space: 2256264094
Effective search space used: 2256264094
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (27.3 bits)