RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 042534
(447 letters)
>2hig_A 6-phospho-1-fructokinase; transferase; 2.40A {Trypanosoma brucei}
PDB: 3f5m_A*
Length = 487
Score = 515 bits (1328), Expect = 0.0
Identities = 153/441 (34%), Positives = 229/441 (51%), Gaps = 16/441 (3%)
Query: 1 PHLTDYLQLENLKTYTNPLDQNRFFHPSHGFYVSPSDVILRQIVYDLSSACGAFSDSDPR 60
+ Y NP + + S + +D I+ + P
Sbjct: 25 TQEDLKVDRLPGADYPNPSKK----YSSRTEFRDKTDYIMYNPRPRDEPSSENPVSVSP- 79
Query: 61 VHVAYHRAGPRKQIFFEPKNTRAAIVTCGGLCPGLNTVIRELVVGLWELYGVRQILGIQA 120
+ A R +I F P T IVTCGG+CPGLN VIR + + +Y V++++G +
Sbjct: 80 --LLCELAAARSRIHFNPTETTIGIVTCGGICPGLNDVIRSITLTGINVYNVKRVIGFRF 137
Query: 121 GYRGFYS-TTRNPLVLNPKMVRGWHKLGGTVLETSRGGFDLHQIVDAIQTNAFNQVYIIG 179
GY G ++ + L+ V H GGT+L +SRG D ++VD ++ N ++ +G
Sbjct: 138 GYWGLSKKGSQTAIELHRGRVTNIHHYGGTILGSSRGPQDPKEMVDTLERLGVNILFTVG 197
Query: 180 GDGTMRGAVEIFDEIQRRKINVGVVGIPKTVDNDVGIIDRSFGFQTAVEMAQQAISAAHV 239
GDGT RGA+ I E +RR +++ V G+PKT+DND+ R+FGFQTAVE A QAI AA+
Sbjct: 198 GDGTQRGALVISQEAKRRGVDISVFGVPKTIDNDLSFSHRTFGFQTAVEKAVQAIRAAYA 257
Query: 240 EAESAVNGIGLVKLMGRSTGHIALHATLSSRDVDCCLIPEMEFYLEGKGGLVEFLDNRLK 299
EA SA G+G+VKLMGR +G IA A ++S + CL+PE + ++ L+ R
Sbjct: 258 EAVSANYGVGVVKLMGRDSGFIAAQAAVASAQANICLVPENPISEQ---EVMSLLERRFC 314
Query: 300 ENGHAVLVVAEGAGQNMIPRTAAQTEERDESGNLVFLDVGSWLKTELKKWWARDHPGEL- 358
+ V++VAEG GQ+ + D SGN +D+G L ++K + +
Sbjct: 315 HSRSCVIIVAEGFGQDWGRG----SGGYDASGNKKLIDIGVILTEKVKAFLKANKSRYPD 370
Query: 359 FTVKYIDPTYMIRAVPANATDNLYCTLLAHSAIHGVMAGYTGFVSGPINGNYAYIPLEDV 418
TVKYIDP+YMIRA P +A D L+C LA A+H MAG TG + + NY +P++
Sbjct: 371 STVKYIDPSYMIRACPPSANDALFCATLATLAVHEAMAGATGCIIAMRHNNYILVPIKVA 430
Query: 419 AQATNAVNTKDHKWAWVRTVT 439
++ + W VR +T
Sbjct: 431 TSVRRVLDLRGQLWRQVREIT 451
>2f48_A Diphosphate--fructose-6-phosphate 1-phosphotransf; phosphotransfer,
transferase; HET: FBP; 2.11A {Borrelia burgdorferi}
SCOP: c.89.1.1 PDB: 1kzh_A*
Length = 555
Score = 241 bits (617), Expect = 4e-74
Identities = 84/419 (20%), Positives = 147/419 (35%), Gaps = 76/419 (18%)
Query: 62 HVAYHRAGPRKQIFFEPKNTRAAIVTCGGLCPGLNTVIRELVVGLWELYGVRQILGIQAG 121
+ G F + I+ GG PG + VI + + + ++ G + G
Sbjct: 56 PIISFTEGESSLSFSKAL--NIGIILSGGPAPGGHNVISGVFDAIKKFNPNSKLFGFKGG 113
Query: 122 YRGFYSTTRNPLVLNPKMVRGWHKLGGTVLETSRGG-----FDLHQIVDAIQTNAFNQVY 176
G + + L ++ + GG + +S ++ + + N N +
Sbjct: 114 PLGLLE--NDKIELTESLINSYRNTGGFDIVSSGRTKIETEEHYNKALFVAKENNLNAII 171
Query: 177 IIGGDGTMRGAVEIFDEIQRRKINVGVVGIPKTVDNDV--GIIDRSFGFQTAVEMAQQAI 234
IIGGD + A + + ++ N+ V+G+PKT+D D+ I+ SFGF +A ++ + I
Sbjct: 172 IIGGDDSNTNAAILAEYFKKNGENIQVIGVPKTIDADLRNDHIEISFGFDSATKIYSELI 231
Query: 235 SAAHVEAESAVNGIGLVKLMGRSTGHIALHATLSSRDVDCCLIPEMEFYLE--------- 285
+A S VKLMGRS H+AL L + + C++ E +
Sbjct: 232 GNLCRDAMSTKKYWHFVKLMGRSASHVALECALKTHP-NICIVSEEVLAKKKTLSEIIDE 290
Query: 286 -----------GKG--------GLVEF----------LDNRLKENGHAVLVVAEGAGQNM 316
G GL+EF L + +N + + +
Sbjct: 291 MVSVILKRSLNGDNFGVVIVPEGLIEFIPEVKSLMLELCDIFDKNEGEFKGLNIEKMKEI 350
Query: 317 IPRT--------------------AAQTEERDESGNLVFLDV------GSWLKTELKKWW 350
ERD GN V +++ L
Sbjct: 351 FVAKLSDYMKGVYLSLPLFIQFELIKSILERDPHGNFNVSRVPTEKLFIEMIQSRLNDMK 410
Query: 351 ARDHPGELFTVKYIDPTYMIRAVPANATDNLYCTLLAHSAIHGVMAGYTGFVSGPINGN 409
R FT Y R+ + D+ YC L ++A+ ++ G TG++S N N
Sbjct: 411 KRGEYKGSFTPVDHFFGYEGRSAFPSNFDSDYCYSLGYNAVVLILNGLTGYMSCIKNLN 469
>3hno_A Pyrophosphate-dependent phosphofructokinase; structural genomics,
PSI-2, protein structure initiative; 2.00A {Nitrosospira
multiformis atcc 25196} PDB: 3k2q_A
Length = 419
Score = 161 bits (409), Expect = 4e-45
Identities = 65/366 (17%), Positives = 125/366 (34%), Gaps = 41/366 (11%)
Query: 82 RAAIVTCGGLCPGLNTVIRELVVGLWELYGVRQILGIQAGYRGFYSTTRNPLV-LNPKMV 140
A GG+ +N ++ + G +I I AG G L+ +
Sbjct: 5 NAFYAQSGGVTAVINASAAGVIEAARKQSG--KIGRIYAGRNGIIGALTEDLIDTGQESD 62
Query: 141 RGWHKL---GGTVLETSR--------GGFDLHQIVDAIQTNAFNQVYIIGGDGTMRGAVE 189
L + R + ++++ + + + GG + ++
Sbjct: 63 AAISALRYTPSGAFGSCRYKLKSLEQNRREYERLIEVFKAHDIGYFFYNGGGDSADTCLK 122
Query: 190 IFDEIQRRKINVGVVGIPKTVDNDVGIIDRSFGFQTAVEMAQQAISAAHVEAESAV---N 246
+ + + +PKTVDND+ I D GF + + + A + S
Sbjct: 123 VSQLSGTLGYPIQAIHVPKTVDNDLPITDCCPGFGSVAKYIAVSTLEASFDVASMSATST 182
Query: 247 GIGLVKLMGRSTGHIALHATLSSRD----VDCCLIPEMEFYLEGKGGLVEFLDNRLKENG 302
+ ++++MGR G IA L+S L PE+ F + + +D+ +K+ G
Sbjct: 183 KVFVLEVMGRHAGWIAAAGGLASSPEREIPVVILFPEISFDKQ---KFLAKVDSCVKKFG 239
Query: 303 HAVLVVAEGAGQNMIPRTAAQTEERDESGNLVFLDVGSWLKTELKKWWARDHPGELFTVK 362
+ +VV+EG + + + RD G+ V + + +K+ G
Sbjct: 240 YCSVVVSEGV-KGDDGKFLSDQGVRDAFGHAQLGGVAPVVASMVKE-----GLG--LKYH 291
Query: 363 YIDPTYMIR--AVPANATDNLYCTLLAHSAIH-------GVMAGYTGFVSGPINGNYAYI 413
+ Y+ R A+ TD + +A+ VM + P
Sbjct: 292 WGVADYLQRAARHIASKTDVEQAYAMGQAAVEFAVQGHNSVMPTIERISARPYQWKVGMA 351
Query: 414 PLEDVA 419
L VA
Sbjct: 352 QLSQVA 357
>3opy_A 6-phosphofructo-1-kinase alpha-subunit; ATP binding,
fructose-6-phosphate bindi magnesium binding, citrate
binding, ADP binding; HET: ATP; 3.05A {Pichia pastoris}
Length = 989
Score = 159 bits (404), Expect = 2e-42
Identities = 57/266 (21%), Positives = 95/266 (35%), Gaps = 14/266 (5%)
Query: 67 RAGPRKQIFFEPKNTRAAIVTCGGLCPGLNTVIRELV-VGLWELYGVRQILGIQAGYRGF 125
+ + E AI+ G LN R L G R + I+ G+ G
Sbjct: 585 KYDDGSYLVPESSRLNIAIIHVGAPTSALNPATRVATLNSLA--KGHR-VFAIRNGFAGL 641
Query: 126 YSTTRNPLVLNPKMVRGWHKLGGTVLETSRG--GFDLHQIVDAIQTNAFNQVYIIGGDGT 183
LN V WH GG+ + T+R D+ + Q F+ + IIGG
Sbjct: 642 IRH-GAVRELNWIDVEDWHNTGGSEIGTNRSLPSDDMGTVAYYFQQYKFDGLIIIGGFEA 700
Query: 184 MRGAVEIFDEIQRRKI-NVGVVGIPKTVDNDVGIIDRSFGFQTAVEMAQQAISAAHVEAE 242
E+ + I N+ + +P TV N+V + S G T + A A
Sbjct: 701 FTALYELDAARAQYPIFNIPMCCLPATVSNNVPGTEYSLGSDTCLNTLSGYCDAVKQSAS 760
Query: 243 SAVNGIGLVKLMGRSTGHIALHATLSSRDVDCCLIPEMEFYLEGKGGLVEFLDNRLKENG 302
++ +V++ G +G++A +A L + PE L+ +E L +E+
Sbjct: 761 ASRRRTFVVEVQGGYSGYLASYAGLIT-GALAVYTPENPINLQTVQEDIELLTRTYEEDD 819
Query: 303 -----HAVLVVAEGAGQNMIPRTAAQ 323
+ + E A + A
Sbjct: 820 GKNRSGKIFIHNEKASKVYTTDLIAA 845
Score = 132 bits (334), Expect = 2e-33
Identities = 78/390 (20%), Positives = 138/390 (35%), Gaps = 82/390 (21%)
Query: 77 EPKNTRAAIVTCGGLCPGLNTVIRELV-VGLWELYGVRQILGIQAGYRGFYSTTRNPLVL 135
E + AI+T GG PG+N +R + G++ YG + + GY G L
Sbjct: 207 EEGKKKIAIITSGGDAPGMNAAVRAVTRAGIF--YGCK-VYACYEGYTGLVKGGDMLKEL 263
Query: 136 NPKMVRGWHKLGGTVLETSRG-GFD----LHQIVDAIQTNAFNQVYIIGGDGTMRGA--- 187
+ VRG +GGT++ T+R F Q + +N + + + GGDG++ GA
Sbjct: 264 QWQDVRGLLSIGGTIIGTARCKEFRERWGRLQACYNMVSNGIDALVVCGGDGSLTGADLF 323
Query: 188 --------------VEIFDEIQRRKINVGVVGIPKTVDNDVGIIDRSFGFQTAVEMAQQA 233
+I E N+ +VG+ ++DND+ D + G +++E +
Sbjct: 324 RKEWPELIKELLGEDKITKEQYETHRNLTIVGLVGSIDNDMCGTDSTIGAYSSLERIIEL 383
Query: 234 ISAAHVEAESAVNGIGLVKLMGRSTGHIALHATLSSRDVDCCLIPEMEFYLEGKGGLVEF 293
+ A S + +V++MGR G + L + +++ D IPE + +
Sbjct: 384 VDYIDATAASH-SRAFVVEVMGRHCGWLGLMSGIAT-GADYIFIPERPP---SESNWKDD 438
Query: 294 LDNRLKEN-----GHAVLVVAEGAGQNMIPRTAAQTEERDESGNLVFLDVGSWLKTELKK 348
L + ++VAEGA D+ N + + + E+
Sbjct: 439 LKKVCLRHREKGRRKTTVIVAEGAI--------------DDQLNPITSEEVKDVLVEIG- 483
Query: 349 WWARDHPGELFTVKYIDPTYMIRAV---------PANATDNLYCTLLAHSAIHGVMAGYT 399
+D R A D T+ A+ V+
Sbjct: 484 ---------------LD----TRITRLGHVQRGGAPCAFDRFLATVQGVDAVRAVLESTP 524
Query: 400 GFVS---GPINGNYAYIPLEDVAQATNAVN 426
S + PL + T V+
Sbjct: 525 AIPSPVISILENKIVRQPLVESVAQTKTVS 554
>1zxx_A 6-phosphofructokinase; allosteric regulation, lactobacillus BU
transferase; 1.85A {Lactobacillus delbrueckii subsp}
Length = 319
Score = 151 bits (383), Expect = 3e-42
Identities = 83/361 (22%), Positives = 145/361 (40%), Gaps = 54/361 (14%)
Query: 82 RAAIVTCGGLCPGLNTVIRELV-VGLWELYGVRQILGIQAGYRGFYSTTRNPLVLNPKMV 140
R I+T GG PG+N +R + V + G+ ++ GI+ G+ G + + L + V
Sbjct: 3 RIGILTSGGDAPGMNAAVRAVTRVAIA--NGL-EVFGIRYGFAGLVA--GDIFPLESEDV 57
Query: 141 RGWHKLGGTVLETSRGG-FD----LHQIVDAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQ 195
+ GT L ++R F ++ ++ + + V +IGGDG+ GA+++
Sbjct: 58 AHLINVSGTFLYSARYPEFAEEEGQLAGIEQLKKHGIDAVVVIGGDGSYHGALQLTRH-- 115
Query: 196 RRKINVGVVGIPKTVDNDVGIIDRSFGFQTAVEMAQQAISAAHVEAESAVNGIGLVKLMG 255
+G+P T+DND+ D + G+ TA A AI A S + + +V +MG
Sbjct: 116 ----GFNSIGLPGTIDNDIPYTDATIGYDTACMTAMDAIDKIRDTASSH-HRVFIVNVMG 170
Query: 256 RSTGHIALHATLSSRDVDCCLIPEMEFYLEGKGGLVEFLDNRLKEN-GHAVLVVAEGAGQ 314
R+ G IA+ ++ D +IPE + +E + L + H ++VVAEG
Sbjct: 171 RNCGDIAMRVGVAC-GADAIVIPERPYDVE---EIANRLKQAQESGKDHGLVVVAEGVM- 225
Query: 315 NMIPRTAAQTEERDESGNLVFLDVGSWLKTELKKWWARDHPGELFTVKYIDPTYMIRAVP 374
ELKK + F V+ +M R
Sbjct: 226 -----------------------TADQFMAELKK-----YGD--FDVRANVLGHMQRGGT 255
Query: 375 ANATDNLYCTLLAHSAIHGVMAGYTGFVSGPINGNYAYIPLEDVAQATNAVNTKDHKWAW 434
+D + + L A+H ++ G G G NG + D+ ++ + K
Sbjct: 256 PTVSDRVLASKLGSEAVHLLLEGKGGLAVGIENGKVTSHDILDLFDESHRGDYDLLKLNA 315
Query: 435 V 435
Sbjct: 316 D 316
>3o8l_A 6-phosphofructokinase, muscle type; transferase; HET: ATP ADP;
3.20A {Oryctolagus cuniculus} PDB: 3o8n_A*
Length = 762
Score = 157 bits (400), Expect = 5e-42
Identities = 62/289 (21%), Positives = 102/289 (35%), Gaps = 13/289 (4%)
Query: 40 LRQIVYDLSSACGAFSDSDPRVHVAYHRAGPRKQIFFEPKNTRAAIVTCGGLCPGLNTVI 99
+ + +D A S Y + + + A++ G G+N +
Sbjct: 362 MDEKRFDE--AMKLRGRSFMNNWEVYKLLAHIRPPAPKSGSYTVAVMNVGAPAAGMNAAV 419
Query: 100 RELV-VGLWELYGVRQILGIQAGYRGFYSTTRNPLVLNPKMVRGWHKLGGTVLETSRG-- 156
R V +GL G R +L + G+ G V GW GG+ L + R
Sbjct: 420 RSTVRIGLI--QGNR-VLVVHDGFEGPAKGQIEEA--GWSYVGGWTGQGGSKLGSKRTLP 474
Query: 157 GFDLHQIVDAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQRRKI-NVGVVGIPKTVDNDVG 215
QI I + IIGG G +E+ + ++ + V IP TV N+V
Sbjct: 475 KKSFEQISANITKFNIQGLVIIGGFEAYTGGLELMEGRKQFDELCIPFVVIPATVSNNVP 534
Query: 216 IIDRSFGFQTAVEMAQQAISAAHVEAESAVNGIGLVKLMGRSTGHIALHATLSSRDVDCC 275
D S G TA+ A + +++ MG G++A A L++ D
Sbjct: 535 GSDFSVGADTALNTICTTCDRIKQSAAGTKRRVFIIETMGGYCGYLATMAGLAA-GADAA 593
Query: 276 LIPEMEFYLEGKGGLVEFLDNRLKEN-GHAVLVVAEGAGQNMIPRTAAQ 323
I E F + VE L ++K +++ E +N
Sbjct: 594 YIFEEPFTIRDLQANVEHLVQKMKTTVKRGLVLRNEKCNENYTTDFIFN 642
Score = 134 bits (340), Expect = 4e-34
Identities = 80/389 (20%), Positives = 139/389 (35%), Gaps = 76/389 (19%)
Query: 77 EPKNTRAAIVTCGGLCPGLNTVIRELV-VGLWELYGVRQILGIQAGYRGFYSTTRNPLVL 135
A++T GG G+N +R +V VG++ G R + + GY+G +
Sbjct: 12 LGVGKAIAVLTSGGDAQGMNAAVRAVVRVGIF--TGAR-VFFVHEGYQGLVDGGDHIREA 68
Query: 136 NPKMVRGWHKLGGTVLETSRGG-FDLH----QIVDAIQTNAFNQVYIIGGDGTMRGA--- 187
+ V +LGGTV+ ++R F + + + +IGGDG++ GA
Sbjct: 69 TWESVSMMLQLGGTVIGSARCKDFREREGRLRAAHNLVKRGITNLCVIGGDGSLTGADTF 128
Query: 188 --------------VEIFDEIQRRKINVGVVGIPKTVDNDVGIIDRSFGFQTAVEMAQQA 233
+I E R + +VG+ ++DND D + G +A+ +
Sbjct: 129 RSEWSDLLSDLQKAGKITAEEATRSSYLNIVGLVGSIDNDFCGTDMTIGTDSALHRITEI 188
Query: 234 ISAAHVEAESAVNGIGLVKLMGRSTGHIALHATLSSRDVDCCLIPEMEFYLEGKGGLVEF 293
+ A A+S ++++MGR G++AL +LS D IPE + L
Sbjct: 189 VDAITTTAQSH-QRTFVLEVMGRHCGYLALVTSLSC-GADWVFIPECPPDDNWEDHLCRR 246
Query: 294 LDNRLKENG--HAVLVVAEGAGQNMIPRTAAQTEERDESGNLVFLDVGSWLKTELKKWWA 351
L + G +++VAEGA D +G + +K +
Sbjct: 247 LSET-RTRGSRLNIIIVAEGAI--------------DRNGKPIT---SEGVKDLVV---- 284
Query: 352 RDHPGELFTVKYIDPTYMIRAV---------PANATDNLYCTLLAHSAIHGVMAGYTG-- 400
G D R +A D + + + A+ ++ G
Sbjct: 285 -RRLG-------YD----TRVTVLGHVQRGGTPSAFDRILGSRMGVEAVMALLEGTPDTP 332
Query: 401 -FVSGPINGNYAYIPLEDVAQATNAVNTK 428
V +PL + Q T V
Sbjct: 333 ACVVSLSGNQAVRLPLMECVQVTKDVTKA 361
>3o8o_B 6-phosphofructokinase subunit beta; transferase; HET: F6P FDP;
2.90A {Saccharomyces cerevisiae}
Length = 766
Score = 156 bits (397), Expect = 1e-41
Identities = 59/287 (20%), Positives = 106/287 (36%), Gaps = 22/287 (7%)
Query: 45 YDLSSACGAFSDSDPRVHVAYH---RAGPRKQIFFEPKNTRAAIVTCGGLCPGLNTVIRE 101
D A + A + + K + AIV G G+N+ +
Sbjct: 355 KDFKRAMSLRDTEFIEHLNNFMAINSADHNEPKLPKDKRLKIAIVNVGAPAGGINSAVYS 414
Query: 102 LV-VGLWELYGVRQILGIQAGYRGFYSTTRNPLV--LNPKMVRGWHKLGGTVLETSRG-- 156
+ + G R I G+ G R+ V LN K + GW GG+ + T+R
Sbjct: 415 MATYCMS--QGHR-PYAIYNGWSGLA---RHESVRSLNWKDMLGWQSRGGSEIGTNRVTP 468
Query: 157 -GFDLHQIVDAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQRRKI-NVGVVGIPKTVDNDV 214
DL I Q F+ + I+GG ++ + + +V IP T+ N+V
Sbjct: 469 EEADLGMIAYYFQKYEFDGLIIVGGFEAFESLHQLERARESYPAFRIPMVLIPATLSNNV 528
Query: 215 GIIDRSFGFQTAVEMAQQAISAAHVEAESAVNGIGLVKLMGRSTGHIALHATLSSRDVDC 274
+ S G TA+ + A S +V G ++G++A +A+L+
Sbjct: 529 PGTEYSLGSDTALNALMEYCDVVKQSASSTRGRAFVVDCQGGNSGYLATYASLAV-GAQV 587
Query: 275 CLIPEMEFYLEGKGGLVEFLDNRLKEN-----GHAVLVVAEGAGQNM 316
+PE LE +E+L ++ +++ + A + +
Sbjct: 588 SYVPEEGISLEQLSEDIEYLAQSFEKAEGRGRFGKLILKSTNASKAL 634
Score = 121 bits (306), Expect = 8e-30
Identities = 62/264 (23%), Positives = 111/264 (42%), Gaps = 43/264 (16%)
Query: 82 RAAIVTCGGLCPGLNTVIRELV-VGLWELYGVRQILGIQAGYRGFYSTTRNPLV-LNPKM 139
A++T GG PG+N+ +R +V ++ G R + GY G + + +
Sbjct: 5 AIAVMTSGGDAPGMNSNVRAIVRSAIF--KGCR-AFVVMEGYEGLVRGGPEYIKEFHWED 61
Query: 140 VRGWHKLGGTVLETSR--------GGFDLHQIVDAIQTNAFNQVYIIGGDGTMRGA---- 187
VRGW GGT + T+R G + + + + GGDG++ GA
Sbjct: 62 VRGWSAEGGTNIGTARCMEFKKREG---RLLGAQHLIEAGVDALIVCGGDGSLTGADLFR 118
Query: 188 -------------VEIFDEIQRRKINVGVVGIPKTVDNDVGIIDRSFGFQTAVEMAQQAI 234
I +E R ++ + G ++DND+ D + G +A++ +AI
Sbjct: 119 SEWPSLIEELLKTNRISNEQYERMKHLNICGTVGSIDNDMSTTDATIGAYSALDRICKAI 178
Query: 235 SAAHVEAESAVNGIGLVKLMGRSTGHIALHATLSSRDVDCCLIPEMEFYLEGKGGLVEFL 294
A S + +V++MGR+ G +AL A +++ D IPE + +
Sbjct: 179 DYVEATANSH-SRAFVVEVMGRNCGWLALLAGIAT-SADYIFIPEKPA---TSSEWQDQM 233
Query: 295 DNRLKEN-----GHAVLVVAEGAG 313
+ + ++ ++VVAEGA
Sbjct: 234 CDIVSKHRSRGKRTTIVVVAEGAI 257
>4a3s_A 6-phosphofructokinase; transferase, glycolysis, degradosome; 2.30A
{Bacillus subtilis} PDB: 6pfk_A 3u39_A 3pfk_A 4pfk_A*
1mto_A*
Length = 319
Score = 149 bits (378), Expect = 1e-41
Identities = 79/361 (21%), Positives = 141/361 (39%), Gaps = 54/361 (14%)
Query: 82 RAAIVTCGGLCPGLNTVIRELV-VGLWELYGVRQILGIQAGYRGFYSTTRNPLVLNPKMV 140
R ++T GG PG+N +R +V ++ + V ++ GI GY G S L V
Sbjct: 3 RIGVLTSGGDSPGMNAAVRAVVRKAIY--HDV-EVYGIYNGYAGLIS--GKIEKLELGSV 57
Query: 141 RGWHKLGGTVLETSRGG-FD----LHQIVDAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQ 195
GGT L T+R F + + ++ + +IGGDG+ GA ++ +
Sbjct: 58 GDIIHRGGTKLYTARCPEFKTVEGREKGIANLKKLGIEGLVVIGGDGSYMGAKKLTEH-- 115
Query: 196 RRKINVGVVGIPKTVDNDVGIIDRSFGFQTAVEMAQQAISAAHVEAESAVNGIGLVKLMG 255
VG+P T+DND+ D + GF TA+ AI A S ++++MG
Sbjct: 116 ----GFPCVGVPGTIDNDIPGTDFTIGFDTALNTVIDAIDKIRDTATSH-ERTYVIEVMG 170
Query: 256 RSTGHIALHATLSSRDVDCCLIPEMEFYLEGKGGLVEFLDNRLKEN-GHAVLVVAEGAGQ 314
R G IAL A L+ + LIPE ++ + ++ L + H++++VAEG G
Sbjct: 171 RHAGDIALWAGLAG-GAESILIPEADYDMH---EIIARLKRGHERGKKHSIIIVAEGVG- 225
Query: 315 NMIPRTAAQTEERDESGNLVFLDVGSWLKTELKKWWARDHPGELFTVKYIDPTYMIRAVP 374
G +++ + ++ R
Sbjct: 226 -----------------------SGVEFGKRIEE-----ETN--LETRVSVLGHIQRGGS 255
Query: 375 ANATDNLYCTLLAHSAIHGVMAGYTGFVSGPINGNYAYIPLEDVAQATNAVNTKDHKWAW 434
+A D + + L A+ ++ G G G N + ++ + + V ++ +
Sbjct: 256 PSAADRVLASRLGAYAVELLLEGKGGRCVGIQNNKLVDHDIIEILETKHTVEQNMYQLSK 315
Query: 435 V 435
Sbjct: 316 E 316
>1pfk_A Phosphofructokinase; transferase(phosphotransferase); HET: FBP ADP;
2.40A {Escherichia coli} SCOP: c.89.1.1 PDB: 2pfk_A
Length = 320
Score = 147 bits (375), Expect = 3e-41
Identities = 79/354 (22%), Positives = 139/354 (39%), Gaps = 52/354 (14%)
Query: 82 RAAIVTCGGLCPGLNTVIRELVVGLWELYGVRQILGIQAGYRGFYSTTRNPLVLNPKMVR 141
+ ++T GG PG+N IR VV G+ +++GI GY G Y + L+ V
Sbjct: 4 KIGVLTSGGDAPGMNAAIRG-VVRSALTEGL-EVMGIYDGYLGLYE--DRMVQLDRYSVS 59
Query: 142 GWHKLGGTVLETSRGG-FD----LHQIVDAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQR 196
GGT L ++R F ++ ++ + + +IGGDG+ GA+ + +
Sbjct: 60 DMINRGGTFLGSARFPEFRDENIRAVAIENLKKRGIDALVVIGGDGSYMGAMRLTEM--- 116
Query: 197 RKINVGVVGIPKTVDNDVGIIDRSFGFQTAVEMAQQAISAAHVEAESAVNGIGLVKLMGR 256
+G+P T+DND+ D + GF TA+ +AI + S I +V++MGR
Sbjct: 117 ---GFPCIGLPGTIDNDIKGTDYTIGFFTALSTVVEAIDRLRDTSSSH-QRISVVEVMGR 172
Query: 257 STGHIALHATLSSRDVDCCLIPEMEFYLEGKGGLVEFLDNRLKEN-GHAVLVVAEGAGQN 315
G + L A ++ + ++PE+EF E LV + + + HA++ + E
Sbjct: 173 YCGDLTLAAAIAG-GCEFVVVPEVEFSRE---DLVNEIKAGIAKGKKHAIVAITEHMCD- 227
Query: 316 MIPRTAAQTEERDESGNLVFLDVGSWLKTELKKWWARDHPGELFTVKYIDPTYMIRAVPA 375
L ++K G + ++ R
Sbjct: 228 -----------------------VDELAHFIEK-----ETG--RETRATVLGHIQRGGSP 257
Query: 376 NATDNLYCTLLAHSAIHGVMAGYTGFVSGPINGNYAYIPLEDVAQATNAVNTKD 429
D + + + AI ++AGY G G N + + D + D
Sbjct: 258 VPYDRILASRMGAYAIDLLLAGYGGRCVGIQNEQLVHHDIIDAIENMKRPFKGD 311
>3o8o_A 6-phosphofructokinase subunit alpha; transferase; HET: F6P FDP;
2.90A {Saccharomyces cerevisiae}
Length = 787
Score = 154 bits (392), Expect = 6e-41
Identities = 57/263 (21%), Positives = 91/263 (34%), Gaps = 14/263 (5%)
Query: 70 PRKQIFFEPKNTRAAIVTCGGLCPGLNTVIRELV-VGLWELYGVRQILGIQAGYRGFYST 128
++ IV G LN R L +G + I G+ G T
Sbjct: 383 DGSELLPVSDRLNIGIVHVGAPSAALNAATRAATLYCLS--HGHK-PYAIMNGFSGLIQT 439
Query: 129 TRNPLVLNPKMVRGWHKLGGTVLETSRG--GFDLHQIVDAIQTNAFNQVYIIGGDGTMRG 186
L+ V WH LGG+ + T+R DL I Q N + + I+GG R
Sbjct: 440 -GEVKELSWIDVENWHNLGGSEIGTNRSVASEDLGTIAYYFQKNKLDGLIILGGFEGFRS 498
Query: 187 AVEIFDEIQRRKI-NVGVVGIPKTVDNDVGIIDRSFGFQTAVEMAQQAISAAHVEAESAV 245
++ D + I N+ + IP TV N+V + S G T + A +
Sbjct: 499 LKQLRDGRTQHPIFNIPMCLIPATVSNNVPGTEYSLGVDTCLNALVNYTDDIKQSASATR 558
Query: 246 NGIGLVKLMGRSTGHIALHATLSSRDVDCCLIPEMEFYLEGKGGLVEFLDNRLKENG--- 302
+ + ++ G +G+IA L + PE + L + L + +
Sbjct: 559 RRVFVCEVQGGHSGYIASFTGLIT-GAVSVYTPEKKIDLASIREDITLLKENFRHDKGEN 617
Query: 303 --HAVLVVAEGAGQNMIPRTAAQ 323
+LV E A + A
Sbjct: 618 RNGKLLVRNEQASSVYSTQLLAD 640
Score = 129 bits (326), Expect = 2e-32
Identities = 63/260 (24%), Positives = 112/260 (43%), Gaps = 36/260 (13%)
Query: 82 RAAIVTCGGLCPGLNTVIRELV-VGLWELYGVRQILGIQAGYRGFYSTTRNPLVLNPKMV 140
+ A++T GG PG+N +R +V G+ +G + + GY G + + + V
Sbjct: 7 KIAVMTSGGDSPGMNAAVRAVVRTGIH--FGCD-VFAVYEGYEGLLRGGKYLKKMAWEDV 63
Query: 141 RGWHKLGGTVLETSR-GGFD----LHQIVDAIQTNAFNQVYIIGGDGTMRGA-------- 187
RGW GGT++ T+R F Q + + + + + GGDG++ GA
Sbjct: 64 RGWLSEGGTLIGTARSMEFRKREGRRQAAGNLISQGIDALVVCGGDGSLTGADLFRHEWP 123
Query: 188 ---------VEIFDEIQRRKINVGVVGIPKTVDNDVGIIDRSFGFQTAVEMAQQAISAAH 238
E N+ +VG+ ++DND+ D + G +A+E + +
Sbjct: 124 SLVDELVAEGRFTKEEVAPYKNLSIVGLVGSIDNDMSGTDSTIGAYSALERICEMVDYID 183
Query: 239 VEAESAVNGIGLVKLMGRSTGHIALHATLSSRDVDCCLIPEMEFYLEGKGGLVEFLDNRL 298
A+S + +V++MGR G +AL A +++ D IPE G + L
Sbjct: 184 ATAKSH-SRAFVVEVMGRHCGWLALMAGIAT-GADYIFIPERAV---PHGKWQDELKEVC 238
Query: 299 KEN-----GHAVLVVAEGAG 313
+ + + ++VAEGA
Sbjct: 239 QRHRSKGRRNNTIIVAEGAL 258
>3opy_B 6-phosphofructo-1-kinase beta-subunit; ATP binding,
fructose-6-phosphate bindi magnesium binding, citrate
binding, ADP binding; HET: ATP; 3.05A {Pichia pastoris}
Length = 941
Score = 150 bits (381), Expect = 2e-39
Identities = 51/284 (17%), Positives = 104/284 (36%), Gaps = 19/284 (6%)
Query: 52 GAFSDSDPRVHVAYHRAGPRKQIFFEPKNTRAAIVTCGGLCPGLNTVIRELV-VGLWELY 110
+ + ++ + A K + AI+ G G+N+ + + +
Sbjct: 543 DSEFVEHMKNFISTNSADHVPPSLPLEKRKKIAIINVGAPAGGMNSAVYSMATYCMS--R 600
Query: 111 GVRQILGIQAGYRGFYSTTRNPLV--LNPKMVRGWHKLGGTVLETSR---GGFDLHQIVD 165
G I G+ G R+ V +N + GW LGG+ + T+R D+ I
Sbjct: 601 GHV-PYAIHNGFSGLA---RHESVRSINWLDIEGWGSLGGSEIGTNRTLPNDADIGMIAY 656
Query: 166 AIQTNAFNQVYIIGGDGTMRGAVEIFDEIQRRKI-NVGVVGIPKTVDNDVGIIDRSFGFQ 224
+ F+ + ++GG ++ + +V IP T+ N+V + S G
Sbjct: 657 FFEKYGFDGLILVGGFEAFISLHQLERARINYPSLRIPLVLIPATISNNVPGTEYSLGSD 716
Query: 225 TAVEMAQQAISAAHVEAESAVNGIGLVKLMGRSTGHIALHATLSSRDVDCCLIPEMEFYL 284
T + + A + N + +V++ G ++G+IA HA L+ +PE L
Sbjct: 717 TCLNSFMEYCDVIKQSAAATRNRVFVVEVQGGNSGYIATHAQLAC-GAQISYVPEEGISL 775
Query: 285 EGKGGLVEFLDNRLKEN-----GHAVLVVAEGAGQNMIPRTAAQ 323
+ L + +++ +E A + + +
Sbjct: 776 AQLEMDINSLKESFANDQGKTKSGRLILKSENASKVLTTEVIST 819
Score = 127 bits (320), Expect = 1e-31
Identities = 62/272 (22%), Positives = 109/272 (40%), Gaps = 37/272 (13%)
Query: 70 PRKQIFFEPKNTRAAIVTCGGLCPGLNTVIRELV-VGLWELYGVRQILGIQAGYRGFYST 128
+ P ++T GG PG+N +R +V G++ G + + I GY G
Sbjct: 171 DDSEKLLNPVRKTIGVMTSGGDSPGMNPFVRAVVRAGIY--KGCK-VFCIHEGYEGLVRG 227
Query: 129 TRNPLV-LNPKMVRGWHKLGGTVLETSRGG-FDLHQIVDAIQTNAFNQ----VYIIGGDG 182
+ VRGW GGT + T+R F N + + + GGDG
Sbjct: 228 GEKYIKETQWHDVRGWLVEGGTNIGTARCKEFRERSGRLKACKNMIDMGIDALIVCGGDG 287
Query: 183 TMRGA-----------------VEIFDEIQRRKINVGVVGIPKTVDNDVGIIDRSFGFQT 225
++ GA +I + N+ + G ++DND+ D + G +
Sbjct: 288 SLTGADRFRSEWPSLIEELLQTEQISQQQFNTHQNLNICGAVGSIDNDMSSTDATIGAFS 347
Query: 226 AVEMAQQAISAAHVEAESAVNGIGLVKLMGRSTGHIALHATLSSRDVDCCLIPEMEFYLE 285
+++ +AI A S + +V++MGR G + L A L++ D LIPE
Sbjct: 348 SLDRICRAIDYIDATANSH-SRAFIVEVMGRHCGWLGLLAGLAT-SADYILIPEKPASSR 405
Query: 286 GKGGLVEFLDNRLKEN-----GHAVLVVAEGA 312
+ + + + ++ +++VAEGA
Sbjct: 406 ---EWQDQMCDIVGKHRARGKRKTIVIVAEGA 434
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 52.0 bits (124), Expect = 3e-07
Identities = 35/151 (23%), Positives = 48/151 (31%), Gaps = 51/151 (33%)
Query: 7 LQLENLKTYTNPLDQ-------------NRF------FHPSHGFYVSPSDVILRQIVYDL 47
L L K + LDQ NRF FH SH + P+ I DL
Sbjct: 391 LTLRKAKAPSG-LDQSRIPFSERKLKFSNRFLPVASPFH-SH--LLVPA---SDLINKDL 443
Query: 48 SSACGAFSDSDPRVHVAYH-RAG--PRK-----------QIFFEP----KNTRAA---IV 86
+F+ D ++ V Y G R I P T+ I+
Sbjct: 444 VKNNVSFNAKDIQIPV-YDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHIL 502
Query: 87 TCGGLCPGLNTVIRELVVGLWELYGVRQILG 117
G PG + + L + GVR I+
Sbjct: 503 DFG---PGGASGLGVLTHRNKDGTGVRVIVA 530
Score = 46.6 bits (110), Expect = 2e-05
Identities = 42/248 (16%), Positives = 77/248 (31%), Gaps = 88/248 (35%)
Query: 23 RFFHPSHGFYVSPSDVIL---------------RQIVYDLSSACGA-FSDSDPRVHVAYH 66
F ++GF S D+++ ++I + S+ D + +
Sbjct: 1651 NHFKDTYGF--SILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFK 1708
Query: 67 RAGPR--KQIFFEPK-------NTRAAIVTCG----------GLCPGLNTVIRELVVG-- 105
F K T+ A+ GL P T G
Sbjct: 1709 EINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFA-----GHS 1763
Query: 106 LWE---LYGVRQILGIQAG-----YRGFYSTTRNP-----------LVLNP-KMVRGWHK 145
L E L + ++ I++ YRG P + +NP ++
Sbjct: 1764 LGEYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAAS--- 1820
Query: 146 LGGTVLET------SRGGFDLHQIVDAIQTNAFN---QVYIIGGDGTMRG---AVEIFDE 193
L+ R G+ + +IV N +N Q Y+ GD +R + +
Sbjct: 1821 FSQEALQYVVERVGKRTGWLV-EIV-----N-YNVENQQYVAAGD--LRALDTVTNVLNF 1871
Query: 194 IQRRKINV 201
I+ +KI++
Sbjct: 1872 IKLQKIDI 1879
Score = 42.0 bits (98), Expect = 4e-04
Identities = 69/441 (15%), Positives = 111/441 (25%), Gaps = 188/441 (42%)
Query: 1 PHLTDYLQ-----LENLKTYTNPLDQNRFFHPSHGFYVSPSDVI--LRQI-----VYDLS 48
+ D ++ L L LD + F + G +++ L L
Sbjct: 182 VLVGDLIKFSAETLSEL--IRTTLDAEKVF--TQGL-----NILEWLENPSNTPDKDYLL 232
Query: 49 SACGAFSDSDPRVHVAYHRAGPRKQIFFEPKNTRAA--IVTC--GGLCP--------GLN 96
S S P I + A +VT G P G
Sbjct: 233 SI--PIS-------------CP--LIGV----IQLAHYVVTAKLLGFTPGELRSYLKGAT 271
Query: 97 TVIRELVVGL-------WE-LYG-VRQILGI--QAGYRGFYSTTRNPLVLNPKMVRGWHK 145
+ LV + WE + VR+ + + G R L P ++
Sbjct: 272 GHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRC--YEAYPNTSLPPSILE---- 325
Query: 146 LGGTVLETSRG---------GFDLHQIVDAI-QTNAF----NQVYI----------IGGD 181
LE + G Q+ D + +TN+ QV I + G
Sbjct: 326 ---DSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGP 382
Query: 182 -GTMRGAVEIFDEI-------Q------RRKINVGV----VGIP----------KTVDND 213
++ G + Q RK+ V P ++ D
Sbjct: 383 PQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKD 442
Query: 214 VGIIDRSFG--------FQTA------------VEMAQQAISAAHVEAESAVNGIGLVKL 253
+ + SF + T E I V+ E+
Sbjct: 443 LVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQF------ 496
Query: 254 MGRSTGHIALHATLSSRDVDCCLIPEMEFYLEGKGGLVEFLDNRLKENGHAVLV--VAEG 311
++T HI +D G GG +G VL +G
Sbjct: 497 --KAT-HI----------LDF-----------GPGGA----------SGLGVLTHRNKDG 522
Query: 312 AGQNMIPRTAAQTEERDESGN 332
G +I D+ G
Sbjct: 523 TGVRVIVAGTLDINPDDDYGF 543
Score = 36.6 bits (84), Expect = 0.019
Identities = 48/306 (15%), Positives = 84/306 (27%), Gaps = 109/306 (35%)
Query: 150 VLETSRGGFDLHQIVDAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGIPKT 209
V + G FD Q+++ F Y+ G D I+ + +
Sbjct: 72 VEPSKVGQFD--QVLNLC-LTEFENCYLEGND-----------------IHALAAKLLQE 111
Query: 210 VDNDVG----IIDRSFGFQTAVEMAQQAISAAHVEAESAVNGIGLVKLMGRSTGHIALHA 265
D + +I +++ A MA++ SA+ G+ L A
Sbjct: 112 NDTTLVKTKELI-KNY-IT-ARIMAKRPFDKKS---NSAL-------FRAVGEGNAQLVA 158
Query: 266 TL----SSRDVDCCLIPEM-EFYLEGK---GGLVEFLDNRLKENGHAVLVVAEGAGQNMI 317
++ D E+ + Y G L++F L E +
Sbjct: 159 IFGGQGNTDD---YF-EELRDLYQTYHVLVGDLIKFSAETLSE----------------L 198
Query: 318 PRTAAQTEERDESGNLVFLDVGSWLKTELKKWWARDHPGELFTVKYIDPTYMIRA---VP 374
RT E+ G L++ WL+ + P D Y++ P
Sbjct: 199 IRTTLDAEKVFTQG----LNILEWLEN------PSNTP---------DKDYLLSIPISCP 239
Query: 375 ANATDNL--YCTL-----LAHSAIHGVMAGYTGFVSGPINGNYAYIPLEDVAQATNAVNT 427
L Y + + G TG G + A A ++
Sbjct: 240 LIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLV-----------TAVAIAETDS 288
Query: 428 KDHKWA 433
W
Sbjct: 289 ----WE 290
Score = 31.9 bits (72), Expect = 0.56
Identities = 40/250 (16%), Positives = 73/250 (29%), Gaps = 88/250 (35%)
Query: 223 FQTAVEMAQQAISAAHVEAESAVNGIGLVKLMGRSTGHIALHATLSSRDVDCCLIPEMEF 282
F + + AA E + +L+G+ G+++ V+ + + +
Sbjct: 37 FNKILPEPTEGF-AADDEPTTPA------ELVGKFLGYVS-------SLVEPSKVGQFDQ 82
Query: 283 YLEGKGGLVEFLDNRLKENG-HAVLVVAEGAGQNMIPRTAAQTEERDESGNLVFLDVGSW 341
L L EF + L+ N HA+ AA+ + +++ +
Sbjct: 83 VL--NLCLTEFENCYLEGNDIHAL---------------AAKLLQENDTT---LVKTKEL 122
Query: 342 LKT------ELKKWWARDHPGELFTVKYIDPTYMIRAVPANATDNLYCTLLAHSAIHGVM 395
+K K+ + + LF RAV L AI G
Sbjct: 123 IKNYITARIMAKRPFDKKSNSALF-----------RAVGEGNA-QLV-------AIFG-- 161
Query: 396 AG-----------------YTGFVSGPINGNYAYIPLEDVAQATNAVNTKDHKW-----A 433
G Y V I ++ L ++ + T K
Sbjct: 162 -GQGNTDDYFEELRDLYQTYHVLVGDLIK--FSAETLSELIRTTLDAE-KVFTQGLNILE 217
Query: 434 WVRTVTNQPD 443
W+ +N PD
Sbjct: 218 WLENPSNTPD 227
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 46.4 bits (109), Expect = 1e-05
Identities = 60/430 (13%), Positives = 132/430 (30%), Gaps = 110/430 (25%)
Query: 21 QNRFFHPSHGFYVS------PSDVI--LRQIVYDLSSACGAFSDSDPRVHVAYHRAGPR- 71
Q + F+++ P V+ L++++Y + + SD + + H
Sbjct: 177 QCKM--DFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAEL 234
Query: 72 KQIFFEPKNTRAAIVTCGGLCPGLNTVIRELVVGLWELYGVR-QILGIQAGYRGFYSTTR 130
+++ +V L V W + + +IL TTR
Sbjct: 235 RRLLKSKPYENCLLV--------LLNVQNAKA---WNAFNLSCKIL----------LTTR 273
Query: 131 NPLVLN------PKMVRGWHKLGGTVLETSRGGF---------DL-HQIVDAIQTNAFNQ 174
V + + H + + DL + + TN +
Sbjct: 274 FKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPRE---VLTTNPR-R 329
Query: 175 VYIIGG---DGTMRGAVEIFDEIQRRKINVGVVGIPKTVDNDVGIID--------RSFG- 222
+ II DG + + + K+ +++ + +++
Sbjct: 330 LSIIAESIRDGLAT--WDNWKHVNCDKLT-------TIIESSLNVLEPAEYRKMFDRLSV 380
Query: 223 FQTAVEMAQQAISAAHVEAESAVNGIGLVKLMGRS-------TGHIALHATLSSRDVDCC 275
F + + +S + + + + KL S I++ S ++
Sbjct: 381 FPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIP----SIYLELK 436
Query: 276 LIPEMEFYLEGKGGLVEFLDNRLK-ENGHAVLVVAEGAGQNMIPR--TAAQTEERDESGN 332
+ E E+ L +V+ + ++ + + + I + ER
Sbjct: 437 VKLENEYALHRS--IVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFR 494
Query: 333 LVFLDVGSWLKTELKK----WWARDHPGELFTV-----KYI---DPTY--MIRA----VP 374
+VFLD +L+ +++ W A YI DP Y ++ A +P
Sbjct: 495 MVFLDF-RFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLP 553
Query: 375 ANATDNLYCT 384
+NL C+
Sbjct: 554 -KIEENLICS 562
Score = 31.4 bits (70), Expect = 0.67
Identities = 19/96 (19%), Positives = 37/96 (38%), Gaps = 9/96 (9%)
Query: 353 DHPGELFTVKYIDPTYMIRAVPANATDNLYCTLLAHSAIHGVMAGYTGFVSGPINGNYAY 412
D P + + + ID M + + T L+ TLL+ FV + NY +
Sbjct: 40 DMPKSILSKEEIDHIIMSKD-AVSGTLRLFWTLLSKQE-----EMVQKFVEEVLRINYKF 93
Query: 413 I--PLEDVAQATNAVNTKDHKWAWVRTVTNQPDFVK 446
+ P++ + ++ T+ + R + F K
Sbjct: 94 LMSPIKTEQRQP-SMMTRMYIEQRDRLYNDNQVFAK 128
Score = 27.9 bits (61), Expect = 9.6
Identities = 21/148 (14%), Positives = 38/148 (25%), Gaps = 38/148 (25%)
Query: 270 RDVDCCLIPEMEFYLEGKGGLVEFLDNRLKENGHAVLVVAEGAGQNMIPRTAAQTEERDE 329
+ DC + +M L +E H ++ + R + E
Sbjct: 31 DNFDCKDVQDM---------PKSILSK--EEIDH---IIMSKDAVSGTLRLFWTLLSKQE 76
Query: 330 SGNLVFLDVG-----SWLKTELKKWWARDHPGELFTVKYID------------PTYMI-R 371
F++ +L + +K + T YI+ Y + R
Sbjct: 77 EMVQKFVEEVLRINYKFLMSPIKT---EQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSR 133
Query: 372 AVPANATDNLYCTLLAHS--AIHGVMAG 397
P L I G + G
Sbjct: 134 LQPYLKLRQALLELRPAKNVLIDG-VLG 160
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 30.3 bits (67), Expect = 0.60
Identities = 10/39 (25%), Positives = 12/39 (30%), Gaps = 15/39 (38%)
Query: 343 KTELKKWWARDHPGELFTVKYIDPTYMIRAVPA---NAT 378
K LKK A +K + PA AT
Sbjct: 19 KQALKKLQAS--------LKLYADD----SAPALAIKAT 45
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif,
systemic lupus erythematosus, phosphoprotein, RNA
maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1
PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Length = 193
Score = 30.6 bits (68), Expect = 0.78
Identities = 23/159 (14%), Positives = 50/159 (31%), Gaps = 10/159 (6%)
Query: 280 MEFYLEGKGGLV--EFLDNRLKENGHAV---LVVAEGAGQNMIPRTAAQTEERDESGNLV 334
+E+Y G L +FL ++K + V +++ + E +S +
Sbjct: 20 IEYYF-GDFNLPRDKFLKEQIKLDEGWVPLEIMIKFNRLNRLTTDFNVIVEALSKSKAEL 78
Query: 335 FLDVGSWLKTELKKWWARDHPGELFTVKYIDPTYMIRAVPANAT-DNLYCTLLAHSAIHG 393
K + + + + I+ P +AT D++ L +
Sbjct: 79 MEISEDKTKIRRSPSKPLPEVTDEYKNDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLN 138
Query: 394 VMAGYTGFVSGPINGNYAYIPLEDVAQATNAVNTKDHKW 432
+ T G ++ + + A V T K+
Sbjct: 139 IQMRRTL--HKAFKG-SIFVVFDSIESAKKFVETPGQKY 174
>2i2c_A Probable inorganic polyphosphate/ATP-NAD kinase 1; NADP bound of
lmnadk1, transferase; HET: DTA PG4; 1.85A {Listeria
monocytogenes egd-e} PDB: 2i1w_A* 2i2a_A* 2i2b_A*
2i29_A* 2i2d_A* 2i2e_A* 3v7u_A* 3v7w_A* 3v7y_A* 3v80_A*
3v8m_A* 3v8n_A* 3v8p_A* 4dy6_A* 2i2f_A* 2q5f_A* 3v8q_A*
3v8r_A*
Length = 272
Score = 30.3 bits (69), Expect = 1.0
Identities = 10/29 (34%), Positives = 14/29 (48%), Gaps = 3/29 (10%)
Query: 178 IGGDGTMRGAVEIFDEIQRRKINVGVVGI 206
IGGDGT A + + R + +GI
Sbjct: 42 IGGDGTFLSAFH---QYEERLDEIAFIGI 67
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics,
nysgxrc T18, GTPase, PSI, protein structure initiative;
HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Length = 282
Score = 29.2 bits (66), Expect = 2.7
Identities = 20/103 (19%), Positives = 36/103 (34%), Gaps = 34/103 (33%)
Query: 128 TTRNP------------LVLN------PKMVRGWHKL----GGTVLETS-RGGFDLHQIV 164
++RNP ++LN + + W + G L + G L+QIV
Sbjct: 38 SSRNPMIEDILKNKPRIMLLNKADKADAAVTQQWKEHFENQGIRSLSINSVNGQGLNQIV 97
Query: 165 DAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGIP 207
A + + + G ++ R I ++GIP
Sbjct: 98 PASKEILQEKFDRMRAKG-----------VKPRAIRALIIGIP 129
>3tew_A Protective antigen; protein transport, toxin; HET: MXE; 1.45A
{Bacillus anthracis} PDB: 3tex_A 3tey_A 3q8b_A 3q8a_A
1t6b_X 1acc_A 3q8e_A 3q8c_A 3tez_A 3mhz_A* 3q8f_A*
3kwv_A 3hvd_A 1tzo_A 1tzn_A 3etb_J 3ino_A
Length = 715
Score = 29.1 bits (64), Expect = 3.4
Identities = 21/155 (13%), Positives = 38/155 (24%), Gaps = 13/155 (8%)
Query: 291 VEFLDNRLKENGHAVLVVAEGAGQNM--IPRTAAQTEERDESGNLVFLDVGSWLKTELKK 348
+++ E G + + I Q E + + + +
Sbjct: 118 IQYQRENPTEKGLDFKLYWTDSQNKKEVISSDNLQLPELKQKSSNSRKKRSTSAGPTVPD 177
Query: 349 WWARDHPGELFTVKYIDPTYMIRAVPANATDNLYCTLLAHSAIHGVMAGYTGFVSGPING 408
P L Y R + N++ G T + S P
Sbjct: 178 RDNDGIPDSLEVEGYTVDVKNKRTFLSPWISNIHEK-----------KGLTKYKSSPEKW 226
Query: 409 NYAYIPLEDVAQATNAVNTKDHKWAWVRTVTNQPD 443
+ A P D + T ++ A V P
Sbjct: 227 STASDPYSDFEKVTGRIDKNVSPEARHPLVAAYPI 261
>2brx_A Uridylate kinase; UMP kinase, amino acid kinase, phosphoryl group
transfer, pyrimidine biosynthesis, transferase; 2.40A
{Pyrococcus furiosus} SCOP: c.73.1.3 PDB: 2ji5_A*
2bmu_A* 2bri_A*
Length = 244
Score = 28.5 bits (64), Expect = 3.7
Identities = 20/101 (19%), Positives = 39/101 (38%), Gaps = 5/101 (4%)
Query: 145 KLGGTVLETSRGGFD-LHQIVDAIQT--NAFNQVYIIGGDGTMRGAVEIFDEIQRRKINV 201
+GG+VL D + +I + ++GG R +E+ ++ +
Sbjct: 25 DIGGSVLVPENPDIDFIKEIAYQLTKVSEDHEVAVVVGGGKLARKYIEVAEKFNSSETFK 84
Query: 202 GVVGIPKTVDNDVGIID--RSFGFQTAVEMAQQAISAAHVE 240
+GI T N + +I R + VE +A A ++
Sbjct: 85 DFIGIQITRANAMLLIAALREKAYPVVVEDFWEAWKAVQLK 125
>2q0x_A Protein DUF1749, uncharacterized protein; alpha/beta hydrolase
fold, structural genomics, structural G of pathogenic
protozoa consortium; 2.20A {Trypanosoma brucei}
Length = 335
Score = 28.5 bits (63), Expect = 4.6
Identities = 11/68 (16%), Positives = 22/68 (32%), Gaps = 3/68 (4%)
Query: 60 RVHVAYHRAGPRKQIFFEPKNTRAAIVTCGGLCPGLNTV--IRELVVGLWELYGVRQILG 117
+ Y + +F + R ++ GG L + L L + Q+
Sbjct: 16 HLFTYYKDPYCKIPVFMMNMDARRCVLWVGGQTESLLSFDYFTNLAEELQGDWAFVQVE- 74
Query: 118 IQAGYRGF 125
+ +G G
Sbjct: 75 VPSGKIGS 82
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.138 0.422
Gapped
Lambda K H
0.267 0.0874 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,150,355
Number of extensions: 455088
Number of successful extensions: 1219
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1134
Number of HSP's successfully gapped: 47
Length of query: 447
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 350
Effective length of database: 3,993,456
Effective search space: 1397709600
Effective search space used: 1397709600
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (26.2 bits)