RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 042534
(447 letters)
>d2f48a1 c.89.1.1 (A:4-553) Pyrophosphate-dependent
phosphofructokinase {Lyme disease spirochete (Borrelia
burgdorferi) [TaxId: 139]}
Length = 550
Score = 206 bits (526), Expect = 2e-61
Identities = 80/416 (19%), Positives = 143/416 (34%), Gaps = 81/416 (19%)
Query: 82 RAAIVTCGGLCPGLNTVIRELVVGLWELYGVRQILGIQAGYRGFYSTTRNPLVLNPKMVR 141
I+ GG PG + VI + + + ++ G + G G + + L ++
Sbjct: 71 NIGIILSGGPAPGGHNVISGVFDAIKKFNPNSKLFGFKGGPLGLL--ENDKIELTESLIN 128
Query: 142 GWHKLGGTVLETSRGGF-----DLHQIVDAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQR 196
+ GG + +S ++ + + N N + IIGGD + A + + ++
Sbjct: 129 SYRNTGGFDIVSSGRTKIETEEHYNKALFVAKENNLNAIIIIGGDDSNTNAAILAEYFKK 188
Query: 197 RKINVGVVGIPKTVDNDV--GIIDRSFGFQTAVEMAQQAISAAHVEAESAVNGIGLVKLM 254
N+ V+G+PKT+D D+ I+ SFGF +A ++ + I +A S VKLM
Sbjct: 189 NGENIQVIGVPKTIDADLRNDHIEISFGFDSATKIYSELIGNLCRDAMSTKKYWHFVKLM 248
Query: 255 GRSTGHIALHATLSSRDVDCCLIPEMEFYLE--------------------GKG------ 288
GRS H+AL L + + C++ E + G
Sbjct: 249 GRSASHVALECALKTHP-NICIVSEEVLAKKKTLSEIIDEMVSVILKRSLNGDNFGVVIV 307
Query: 289 ------------GLVEFLDNRLKENGHAVLVVAEGAGQNMIPRT---------------- 320
L+ L + +N + + +
Sbjct: 308 PEGLIEFIPEVKSLMLELCDIFDKNEGEFKGLNIEKMKEIFVAKLSDYMKGVYLSLPLFI 367
Query: 321 ----AAQTEERDESGNLVF--LDVGSWL----KTELKKWWARDHPGELFTVKYIDPTYMI 370
ERD GN + ++ L R FT Y
Sbjct: 368 QFELIKSILERDPHGNFNVSRVPTEKLFIEMIQSRLNDMKKRGEYKGSFTPVDHFFGYEG 427
Query: 371 RAVPANATDNLYCTLLAHSAIHGVMAGYTGFVSGPINGNYAY-------IPLEDVA 419
R+ + D+ YC L ++A+ ++ G TG++S N N +PL +
Sbjct: 428 RSAFPSNFDSDYCYSLGYNAVVLILNGLTGYMSCIKNLNLKPTDWIAGGVPLTMLM 483
>d4pfka_ c.89.1.1 (A:) ATP-dependent phosphofructokinase {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 319
Score = 182 bits (464), Expect = 8e-55
Identities = 74/358 (20%), Positives = 141/358 (39%), Gaps = 52/358 (14%)
Query: 82 RAAIVTCGGLCPGLNTVIRELVVGLWELYGVRQILGIQAGYRGFYSTTRNPLVLNPKMVR 141
R ++T GG PG+N IR +V +Y ++ G+ GY G + N L V
Sbjct: 3 RIGVLTSGGDSPGMNAAIRSVV--RKAIYHGVEVYGVYHGYAGLIA--GNIKKLEVGDVG 58
Query: 142 GWHKLGGTVLETSRGGF-----DLHQIVDAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQR 196
GGT+L T+R + ++ ++ + + +IGGDG+ +GA ++ +
Sbjct: 59 DIIHRGGTILYTARCPEFKTEEGQKKGIEQLKKHGIQGLVVIGGDGSYQGAKKLTEHGFP 118
Query: 197 RKINVGVVGIPKTVDNDVGIIDRSFGFQTAVEMAQQAISAAHVEAESAVNGIGLVKLMGR 256
VG+P T+DND+ D + GF TA+ AI + ++ ++++MGR
Sbjct: 119 ------CVGVPGTIDNDIPGTDFTIGFDTALNTVIDAIDKIR-DTATSHERTYVIEVMGR 171
Query: 257 STGHIALHATLSSRDVDCCLIPEMEFYLEGKGGLVEFLDNRLKENGHAVLVVAEGAGQNM 316
G IAL + L+ + LIPE ++ + ++ + H++++VAEG G +
Sbjct: 172 HAGDIALWSGLAG-GAETILIPEADYDMNDVIARLKRG--HERGKKHSIIIVAEGVGSGV 228
Query: 317 IPRTAAQTEERDESGNLVFLDVGSWLKTELKKWWARDHPGEL-FTVKYIDPTYMIRAVPA 375
+ R F + ++ R
Sbjct: 229 --------------------------------DFGRQIQEATGFETRVTVLGHVQRGGSP 256
Query: 376 NATDNLYCTLLAHSAIHGVMAGYTGFVSGPINGNYAYIPLEDVAQATNAVNTKDHKWA 433
A D + + L A+ ++ G G G N + + + ++ + + +
Sbjct: 257 TAFDRVLASRLGARAVELLLEGKGGRCVGIQNNQLVDHDIAEALANKHTIDQRMYALS 314
>d1pfka_ c.89.1.1 (A:) ATP-dependent phosphofructokinase
{Escherichia coli [TaxId: 562]}
Length = 320
Score = 172 bits (437), Expect = 9e-51
Identities = 75/361 (20%), Positives = 134/361 (37%), Gaps = 54/361 (14%)
Query: 82 RAAIVTCGGLCPGLNTVIRELVVGLWELYGVRQILGIQAGYRGFYSTTRNPLVLNPKMVR 141
+ ++T GG PG+N IR +V L +++GI GY G Y + L+ V
Sbjct: 4 KIGVLTSGGDAPGMNAAIRGVV--RSALTEGLEVMGIYDGYLGLY--EDRMVQLDRYSVS 59
Query: 142 GWHKLGGTVLETSRGGF-----DLHQIVDAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQR 196
GGT L ++R ++ ++ + + +IGGDG+ GA ++
Sbjct: 60 DMINRGGTFLGSARFPEFRDENIRAVAIENLKKRGIDALVVIGGDGSYMGA------MRL 113
Query: 197 RKINVGVVGIPKTVDNDVGIIDRSFGFQTAVEMAQQAISAAHVEAESAVNGIGLVKLMGR 256
++ +G+P T+DND+ D + GF TA+ +AI + S+ I +V++MGR
Sbjct: 114 TEMGFPCIGLPGTIDNDIKGTDYTIGFFTALSTVVEAIDRLRDTS-SSHQRISVVEVMGR 172
Query: 257 STGHIALHATLSSRDVDCCLIPEMEFYLEGKGGLVEFLDNRLKENGHAVLVVAEGAGQNM 316
G + L A + C + E + + E K HA++ + E
Sbjct: 173 YCGDLTLAAAI---AGGCEFVVVPEVEFSREDLVNEIKAGIAKGKKHAIVAITEHMCDV- 228
Query: 317 IPRTAAQTEERDESGNLVFLDVGSWLKTELKKWWARDHPGELFTVKYIDPTYMIRAVPAN 376
DE + + + G + ++ R
Sbjct: 229 -----------DELAHFIEKETG-------------------RETRATVLGHIQRGGSPV 258
Query: 377 ATDNLYCTLLAHSAIHGVMAGYTGFVSGPINGNYAYIPLEDVAQATNAVNTKDHKWAWVR 436
D + + + AI ++AGY G G N + + D + D W+
Sbjct: 259 PYDRILASRMGAYAIDLLLAGYGGRCVGIQNEQLVHHDIIDAIENMKRPFKGD----WLD 314
Query: 437 T 437
Sbjct: 315 C 315
>d2qv7a1 e.52.1.2 (A:1-312) Diacylglycerol kinase DgkB
{Staphylococcus aureus [TaxId: 1280]}
Length = 312
Score = 29.2 bits (64), Expect = 1.0
Identities = 14/66 (21%), Positives = 25/66 (37%), Gaps = 4/66 (6%)
Query: 149 TVLETSRGGFDLHQIVDAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGIPK 208
+ T + G D + ++ + GGDGT+ E+ + I + + IP
Sbjct: 37 SAYATEKIG-DATLEAERAMHENYDVLIAAGGDGTLN---EVVNGIAEKPNRPKLGVIPM 92
Query: 209 TVDNDV 214
ND
Sbjct: 93 GTVNDF 98
>d1dl5a2 d.197.1.1 (A:214-317) Protein-L-isoaspartyl
O-methyltransferase, C-terminal domain {Thermotoga
maritima [TaxId: 2336]}
Length = 104
Score = 27.6 bits (61), Expect = 1.2
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 282 FYLEGKGGLVEFLDNRLKENGHA 304
FY G G+VEFLD+R++ G A
Sbjct: 45 FYYAGPNGVVEFLDDRMRIYGDA 67
>d2bona1 e.52.1.2 (A:5-299) Lipid kinase YegS {Escherichia coli
[TaxId: 562]}
Length = 295
Score = 26.9 bits (58), Expect = 5.5
Identities = 13/65 (20%), Positives = 23/65 (35%), Gaps = 2/65 (3%)
Query: 149 TVLETSRGGFDLHQIVDAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQR-RKINVGVVGIP 207
V T G D + V+ + V GGDGT+ + + +G++ +
Sbjct: 32 HVRVTWEKG-DAARYVEEARKFGVATVIAGGGDGTINEVSTALIQCEGDDIPALGILPLG 90
Query: 208 KTVDN 212
D
Sbjct: 91 TANDF 95
>d1kjna_ c.115.1.1 (A:) Hypothetical protein MTH777 (MT0777)
{Archaeon Methanobacterium thermoautotrophicum [TaxId:
145262]}
Length = 152
Score = 25.9 bits (57), Expect = 7.5
Identities = 8/28 (28%), Positives = 14/28 (50%)
Query: 290 LVEFLDNRLKENGHAVLVVAEGAGQNMI 317
L + ++LK+ G V V A A ++
Sbjct: 19 LAIYTSHKLKKKGFRVTVTANPAALRLV 46
>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus
voltae [TaxId: 2188]}
Length = 190
Score = 26.1 bits (56), Expect = 8.5
Identities = 7/44 (15%), Positives = 18/44 (40%)
Query: 286 GKGGLVEFLDNRLKENGHAVLVVAEGAGQNMIPRTAAQTEERDE 329
G + + L++ G +V+ G+ + + +RD+
Sbjct: 13 GSTTSSQLAMDNLRKEGVNYKMVSFGSVMFEVAKEENLVSDRDQ 56
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.138 0.422
Gapped
Lambda K H
0.267 0.0522 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,727,129
Number of extensions: 82060
Number of successful extensions: 224
Number of sequences better than 10.0: 1
Number of HSP's gapped: 214
Number of HSP's successfully gapped: 16
Length of query: 447
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 359
Effective length of database: 1,199,356
Effective search space: 430568804
Effective search space used: 430568804
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.1 bits)