Query 042537
Match_columns 789
No_of_seqs 743 out of 4455
Neff 10.2
Searched_HMMs 46136
Date Fri Mar 29 07:08:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042537.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042537hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 2.3E-71 5E-76 669.3 49.6 583 2-736 28-611 (968)
2 PLN00113 leucine-rich repeat r 100.0 1.2E-56 2.7E-61 541.3 42.1 518 75-736 69-588 (968)
3 KOG4194 Membrane glycoprotein 100.0 3E-39 6.5E-44 327.8 10.6 232 430-711 197-431 (873)
4 KOG4194 Membrane glycoprotein 100.0 2.2E-39 4.7E-44 328.8 8.7 365 77-559 80-447 (873)
5 KOG0472 Leucine-rich repeat pr 100.0 1.4E-41 3E-46 330.2 -12.6 476 74-709 44-541 (565)
6 KOG0472 Leucine-rich repeat pr 100.0 1.9E-38 4.2E-43 308.4 -10.6 480 96-732 41-541 (565)
7 KOG0618 Serine/threonine phosp 100.0 3.5E-36 7.5E-41 322.1 -3.7 483 105-707 3-487 (1081)
8 KOG0618 Serine/threonine phosp 100.0 4.8E-35 1E-39 313.4 -2.2 420 48-564 22-443 (1081)
9 KOG0444 Cytoskeletal regulator 100.0 9.6E-33 2.1E-37 282.3 -0.6 368 74-540 6-375 (1255)
10 KOG0444 Cytoskeletal regulator 100.0 2E-32 4.4E-37 280.0 -2.6 363 204-707 8-373 (1255)
11 KOG4237 Extracellular matrix p 99.9 1.9E-27 4.1E-32 231.9 -2.3 428 178-706 67-498 (498)
12 KOG4237 Extracellular matrix p 99.9 1.3E-25 2.9E-30 219.1 -3.8 53 456-512 446-498 (498)
13 PLN03210 Resistant to P. syrin 99.9 1.8E-21 4E-26 235.2 26.4 307 287-683 590-904 (1153)
14 PLN03210 Resistant to P. syrin 99.9 5.7E-21 1.2E-25 230.9 25.5 340 326-707 550-904 (1153)
15 PRK15387 E3 ubiquitin-protein 99.9 1.7E-21 3.6E-26 217.6 17.2 79 627-714 385-463 (788)
16 PRK15387 E3 ubiquitin-protein 99.9 2E-21 4.3E-26 217.0 17.8 267 335-695 202-468 (788)
17 PRK15370 E3 ubiquitin-protein 99.8 6.6E-20 1.4E-24 206.5 13.8 244 387-709 181-428 (754)
18 PRK15370 E3 ubiquitin-protein 99.8 1.6E-19 3.5E-24 203.4 11.5 224 386-685 201-428 (754)
19 KOG0617 Ras suppressor protein 99.7 2.6E-19 5.5E-24 155.1 -4.4 182 476-713 31-216 (264)
20 cd00116 LRR_RI Leucine-rich re 99.7 7.3E-18 1.6E-22 177.6 5.6 143 203-351 137-295 (319)
21 KOG0617 Ras suppressor protein 99.7 3.6E-19 7.9E-24 154.1 -3.7 181 498-733 29-213 (264)
22 cd00116 LRR_RI Leucine-rich re 99.7 5E-18 1.1E-22 178.8 2.0 234 430-708 51-319 (319)
23 PLN03150 hypothetical protein; 99.6 2E-14 4.4E-19 162.2 13.1 148 2-162 371-527 (623)
24 PLN03150 hypothetical protein; 99.5 6.3E-14 1.4E-18 158.2 12.1 118 625-742 419-538 (623)
25 KOG0532 Leucine-rich repeat (L 99.4 2.4E-14 5.3E-19 147.3 -4.7 194 430-683 75-271 (722)
26 KOG0532 Leucine-rich repeat (L 99.3 7.4E-14 1.6E-18 143.8 -2.1 213 435-707 55-271 (722)
27 COG4886 Leucine-rich repeat (L 99.2 1E-11 2.2E-16 134.5 7.3 199 434-691 97-296 (394)
28 COG4886 Leucine-rich repeat (L 99.2 1.2E-11 2.7E-16 133.9 7.1 197 458-713 97-294 (394)
29 KOG1259 Nischarin, modulator o 99.2 5.3E-12 1.1E-16 120.0 1.3 132 527-713 284-416 (490)
30 KOG3207 Beta-tubulin folding c 99.1 1.2E-11 2.5E-16 124.1 1.9 215 97-324 118-340 (505)
31 KOG3207 Beta-tubulin folding c 99.1 1.1E-11 2.4E-16 124.3 -1.6 84 626-709 248-339 (505)
32 KOG1909 Ran GTPase-activating 99.1 4.1E-11 8.9E-16 117.0 1.4 210 68-299 23-254 (382)
33 PF14580 LRR_9: Leucine-rich r 99.0 3.3E-10 7.2E-15 104.2 7.0 76 626-702 66-146 (175)
34 KOG1909 Ran GTPase-activating 99.0 1.2E-10 2.6E-15 113.8 2.4 93 46-139 29-135 (382)
35 KOG1259 Nischarin, modulator o 99.0 2.6E-10 5.6E-15 108.7 2.3 108 451-565 281-388 (490)
36 PF14580 LRR_9: Leucine-rich r 98.9 1.8E-09 3.9E-14 99.4 6.2 110 451-565 16-127 (175)
37 PF13855 LRR_8: Leucine rich r 98.9 1.1E-09 2.3E-14 82.8 3.6 60 649-708 2-61 (61)
38 PF08263 LRRNT_2: Leucine rich 98.9 1.7E-09 3.8E-14 74.3 4.1 41 1-43 1-43 (43)
39 KOG0531 Protein phosphatase 1, 98.9 1.9E-10 4.1E-15 124.6 -1.6 85 626-713 234-322 (414)
40 PF13855 LRR_8: Leucine rich r 98.9 2.2E-09 4.8E-14 81.0 4.1 61 624-684 1-61 (61)
41 KOG0531 Protein phosphatase 1, 98.8 4.1E-10 8.8E-15 122.0 -0.9 35 650-685 234-268 (414)
42 KOG4658 Apoptotic ATPase [Sign 98.6 2.1E-08 4.6E-13 115.9 4.0 252 76-348 546-808 (889)
43 KOG2120 SCF ubiquitin ligase, 98.6 2.4E-09 5.2E-14 102.3 -4.3 87 76-163 186-273 (419)
44 KOG1859 Leucine-rich repeat pr 98.5 1.6E-09 3.5E-14 115.3 -8.0 80 627-710 212-293 (1096)
45 KOG1859 Leucine-rich repeat pr 98.5 8.5E-09 1.8E-13 109.9 -3.2 107 623-735 186-295 (1096)
46 KOG4579 Leucine-rich repeat (L 98.4 1.1E-08 2.4E-13 86.3 -3.7 57 627-685 80-136 (177)
47 KOG4658 Apoptotic ATPase [Sign 98.4 3.1E-07 6.8E-12 106.4 6.3 102 205-318 547-650 (889)
48 KOG2120 SCF ubiquitin ligase, 98.3 4.3E-08 9.3E-13 93.9 -2.6 41 125-166 186-226 (419)
49 KOG2982 Uncharacterized conser 98.2 1E-06 2.2E-11 84.7 3.8 88 122-213 69-156 (418)
50 COG5238 RNA1 Ran GTPase-activa 98.2 6.3E-07 1.4E-11 84.9 1.9 93 70-162 25-132 (388)
51 KOG2982 Uncharacterized conser 98.1 4.4E-07 9.5E-12 87.1 -0.4 215 124-348 45-263 (418)
52 KOG4579 Leucine-rich repeat (L 98.1 2E-07 4.3E-12 78.9 -2.5 86 626-715 55-141 (177)
53 COG5238 RNA1 Ran GTPase-activa 98.1 9.6E-07 2.1E-11 83.7 1.1 119 46-164 29-171 (388)
54 PF12799 LRR_4: Leucine Rich r 98.0 4.8E-06 1E-10 57.2 3.4 37 101-138 2-38 (44)
55 PF12799 LRR_4: Leucine Rich r 97.9 6.8E-06 1.5E-10 56.5 2.8 17 668-684 20-36 (44)
56 PRK15386 type III secretion pr 97.8 4.1E-05 8.8E-10 79.6 7.5 76 474-563 48-124 (426)
57 PRK15386 type III secretion pr 97.7 0.00012 2.7E-09 76.1 8.9 144 70-245 47-195 (426)
58 KOG1644 U2-associated snRNP A' 97.7 8.9E-05 1.9E-09 67.8 6.1 103 455-561 43-150 (233)
59 KOG4341 F-box protein containi 97.5 4.4E-06 9.4E-11 84.4 -4.5 14 147-160 213-226 (483)
60 KOG3665 ZYG-1-like serine/thre 97.5 3.2E-05 6.8E-10 87.7 1.4 87 72-161 145-231 (699)
61 KOG1644 U2-associated snRNP A' 97.5 0.00016 3.6E-09 66.1 5.7 111 204-347 43-153 (233)
62 PF13306 LRR_5: Leucine rich r 97.5 0.00028 6.1E-09 62.7 7.1 121 449-576 7-127 (129)
63 KOG3665 ZYG-1-like serine/thre 97.5 6.1E-05 1.3E-09 85.4 3.0 159 100-294 122-283 (699)
64 PF13306 LRR_5: Leucine rich r 97.4 0.00046 9.9E-09 61.3 7.2 118 430-554 12-129 (129)
65 KOG2739 Leucine-rich acidic nu 97.4 0.00013 2.8E-09 69.9 3.4 95 65-163 33-129 (260)
66 KOG4341 F-box protein containi 96.9 0.00024 5.2E-09 72.2 0.1 139 259-397 292-439 (483)
67 KOG2739 Leucine-rich acidic nu 96.8 0.00071 1.5E-08 64.9 2.8 79 624-704 65-151 (260)
68 KOG2123 Uncharacterized conser 96.7 0.00011 2.4E-09 70.4 -3.7 84 204-301 20-103 (388)
69 KOG2123 Uncharacterized conser 95.8 0.00088 1.9E-08 64.4 -2.9 40 123-166 18-57 (388)
70 KOG1947 Leucine rich repeat pr 95.5 0.0036 7.7E-08 70.1 0.0 16 282-297 358-373 (482)
71 PF00560 LRR_1: Leucine Rich R 95.5 0.0069 1.5E-07 34.4 1.1 11 651-661 3-13 (22)
72 PF00560 LRR_1: Leucine Rich R 95.5 0.0057 1.2E-07 34.7 0.7 21 673-694 1-21 (22)
73 KOG4308 LRR-containing protein 94.7 0.00069 1.5E-08 73.6 -8.5 188 49-238 89-301 (478)
74 KOG1947 Leucine rich repeat pr 94.0 0.035 7.6E-07 62.0 3.1 83 202-294 242-329 (482)
75 KOG0473 Leucine-rich repeat pr 93.3 0.0042 9.1E-08 58.2 -4.9 82 625-709 43-124 (326)
76 KOG0473 Leucine-rich repeat pr 93.1 0.0018 3.9E-08 60.6 -7.5 87 70-162 37-123 (326)
77 KOG4308 LRR-containing protein 92.8 0.002 4.4E-08 70.0 -9.1 25 327-351 283-307 (478)
78 smart00369 LRR_TYP Leucine-ric 90.9 0.21 4.6E-06 29.6 2.2 20 672-691 2-21 (26)
79 smart00370 LRR Leucine-rich re 90.9 0.21 4.6E-06 29.6 2.2 20 672-691 2-21 (26)
80 PF13504 LRR_7: Leucine rich r 90.3 0.16 3.4E-06 26.7 1.1 9 505-513 4-12 (17)
81 smart00370 LRR Leucine-rich re 89.9 0.31 6.8E-06 28.9 2.3 21 502-523 2-22 (26)
82 smart00369 LRR_TYP Leucine-ric 89.9 0.31 6.8E-06 28.9 2.3 21 502-523 2-22 (26)
83 PF13516 LRR_6: Leucine Rich r 86.1 0.27 5.8E-06 28.5 0.3 15 672-686 2-16 (24)
84 KOG3864 Uncharacterized conser 83.9 0.27 5.9E-06 45.7 -0.5 84 204-297 102-187 (221)
85 smart00365 LRR_SD22 Leucine-ri 80.0 1.3 2.9E-05 26.2 1.6 16 124-139 2-17 (26)
86 KOG3864 Uncharacterized conser 75.5 0.93 2E-05 42.3 0.1 80 626-705 103-185 (221)
87 KOG3763 mRNA export factor TAP 75.3 2.5 5.4E-05 45.7 3.2 40 121-160 215-254 (585)
88 smart00368 LRR_RI Leucine rich 63.5 5.9 0.00013 23.9 1.8 14 672-685 2-15 (28)
89 TIGR00864 PCC polycystin catio 62.7 5.8 0.00013 51.7 3.1 37 678-714 1-37 (2740)
90 KOG4242 Predicted myosin-I-bin 61.6 31 0.00067 36.9 7.6 94 204-300 355-454 (553)
91 smart00364 LRR_BAC Leucine-ric 58.6 6.7 0.00015 23.2 1.3 17 503-520 3-19 (26)
92 KOG4242 Predicted myosin-I-bin 57.9 53 0.0011 35.3 8.5 112 178-299 165-281 (553)
93 KOG3763 mRNA export factor TAP 51.1 9.1 0.0002 41.6 1.9 36 260-296 217-254 (585)
94 smart00367 LRR_CC Leucine-rich 29.7 38 0.00083 19.8 1.5 11 124-134 2-12 (26)
95 TIGR00864 PCC polycystin catio 24.9 46 0.00099 44.1 2.3 32 244-275 2-33 (2740)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=2.3e-71 Score=669.31 Aligned_cols=583 Identities=35% Similarity=0.523 Sum_probs=476.5
Q ss_pred HHHHHHHHHHhhcCcCCCCCCCCCCCCCCCCCCCceeeeEecCCCCcEEEEEcCCCCCCCCcccccCccccCCCCCCEEe
Q 042537 2 EEEREALLEFKQSLVDEYGILSSWGREDDKRDCCYWRGVRCSNTTGHVIVLDLQVLVHSEPLKGTISPSLLKLYHLRHLD 81 (789)
Q Consensus 2 ~~~~~~ll~~~~~~~~~~~~~~~w~~~~~~~~~c~w~gv~c~~~~~~v~~l~L~~~~~~~~l~~~l~~~~~~l~~L~~L~ 81 (789)
++|++||++||+++.+|.+.+.+|. ..++||.|.||+|++ .++|+.|+|++ +.+.|.+++.|..+++|++|+
T Consensus 28 ~~~~~~l~~~~~~~~~~~~~~~~w~---~~~~~c~w~gv~c~~-~~~v~~L~L~~----~~i~~~~~~~~~~l~~L~~L~ 99 (968)
T PLN00113 28 AEELELLLSFKSSINDPLKYLSNWN---SSADVCLWQGITCNN-SSRVVSIDLSG----KNISGKISSAIFRLPYIQTIN 99 (968)
T ss_pred HHHHHHHHHHHHhCCCCcccCCCCC---CCCCCCcCcceecCC-CCcEEEEEecC----CCccccCChHHhCCCCCCEEE
Confidence 6899999999999988888899997 577899999999974 57999999999 888999999999999999999
Q ss_pred CCCCCCCCCCCcccc-cCCCCCCEEecCCCcCCCCCCccccCCCCCcEEeccCccCCCCcchHHhhCCCCCCCEEEcCCC
Q 042537 82 LSENDFSGSRIPEFI-GSLNKLRYLSLSSAEFEGPIPSQLGNLSRLKYLDLSYINLNKSRDWLRIIDKLPSLRTLNLEHC 160 (789)
Q Consensus 82 Ls~n~i~~~~~~~~~-~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n 160 (789)
|++|++++. +|..+ ..+++|++|+|++|.+++.+|. +.+++|++|+|++|.+.+. +|..++++++|++|++++|
T Consensus 100 Ls~n~~~~~-ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~--~p~~~~~l~~L~~L~L~~n 174 (968)
T PLN00113 100 LSNNQLSGP-IPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGE--IPNDIGSFSSLKVLDLGGN 174 (968)
T ss_pred CCCCccCCc-CChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCccccc--CChHHhcCCCCCEEECccC
Confidence 999999875 77655 4899999999999999988775 5689999999999999864 6788999999999999999
Q ss_pred CCCCCccccccccccCCCCCCeEEccCCCCCCCchhHHHhhcCCCcEEEccCCCCcccCchhhhcCCCCcEEECCCCCcc
Q 042537 161 HLPPIIPSDLLHLNFSTSSLGALYLFENSLSSSIYPWLFNISSKLVVLDLDSNLLQGSLLEPFDRMVSLRTLYLGFNELE 240 (789)
Q Consensus 161 ~l~~~~~~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~L~ 240 (789)
.+.+..|. .+.++ ++|++|++++|.+.+.+|..+..+. +|++|++++|.+.+..|..++++++|++|+++
T Consensus 175 ~l~~~~p~--~~~~l--~~L~~L~L~~n~l~~~~p~~l~~l~-~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~----- 244 (968)
T PLN00113 175 VLVGKIPN--SLTNL--TSLEFLTLASNQLVGQIPRELGQMK-SLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLV----- 244 (968)
T ss_pred cccccCCh--hhhhC--cCCCeeeccCCCCcCcCChHHcCcC-CccEEECcCCccCCcCChhHhcCCCCCEEECc-----
Confidence 98877773 34444 7777777777777766666666554 67777777777776677777777777777666
Q ss_pred EEecCCCcCcccchhhhhCCCCCCEEEccCCCCCCccChhhhhcCCCCcEEEccCCcccccccCCCCCcccceeEeccCc
Q 042537 241 ELFLGKNRLNGTINQWLSRMYKLDALSLSGNSLTGVVTESVFSELSNLKALHLDDNSFTLKFSHDWIPPFQLIIILLGSC 320 (789)
Q Consensus 241 ~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~~ 320 (789)
+|.+.+.+|..++++++|++|++++|.+.+.+|. .+.++++|++|++++|.+.+
T Consensus 245 -----~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~-~l~~l~~L~~L~Ls~n~l~~-------------------- 298 (968)
T PLN00113 245 -----YNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPP-SIFSLQKLISLDLSDNSLSG-------------------- 298 (968)
T ss_pred -----CceeccccChhHhCCCCCCEEECcCCeeeccCch-hHhhccCcCEEECcCCeecc--------------------
Confidence 5555556666677777777777777776655554 45666666666666666553
Q ss_pred cCCCCCchhccCCCCccEEEccCCcCCCCcchhHhhhccCCCeeeeccccccccCCCCCCCCCCCCCEEEccCCcccccC
Q 042537 321 QMGPHFPKWLQTQNQIEVLDISDAGISDTVPDWFWDLSHTIADFNLSNNHIKGKLPNLSLRFDPFSSSIDISSNYFEGLI 400 (789)
Q Consensus 321 ~~~~~~~~~l~~l~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~ 400 (789)
.+|.++..+++|+.|++++|.+.+..|..+..+ ++|+.|++++|.+.+.+|.
T Consensus 299 ----~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l-~~L~~L~L~~n~l~~~~p~----------------------- 350 (968)
T PLN00113 299 ----EIPELVIQLQNLEILHLFSNNFTGKIPVALTSL-PRLQVLQLWSNKFSGEIPK----------------------- 350 (968)
T ss_pred ----CCChhHcCCCCCcEEECCCCccCCcCChhHhcC-CCCCEEECcCCCCcCcCCh-----------------------
Confidence 556666667777777777777666555544332 2344444444433332222
Q ss_pred CCCCCCCcEEEcCCCcCccccchhcccCCCCCCEEEcCCCccccCCCcccccCCCCcEEEcCCCcCcccCCccccccCcc
Q 042537 401 PPLPSNASVLNLSRNKFSESISFLCSINGHKLEFLDLSNNILSGRLPDCWMQFDRLAVLSLANNFFSGKIPKSMGFLHSI 480 (789)
Q Consensus 401 ~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 480 (789)
.+. ..++|+.|++++|++++.+|..+..+++|+.|++++|++.+..|..+..+++|
T Consensus 351 --~l~----------------------~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L 406 (968)
T PLN00113 351 --NLG----------------------KHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSL 406 (968)
T ss_pred --HHh----------------------CCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCC
Confidence 100 01678888888888888888888888899999999999988889888889999
Q ss_pred cEEEccCCeeeeeCCcCccCCCCCcEEeCCCCcccccCchhhhhcCCCCcEEEcCCCcccccCCCCccCCCcCceEeccC
Q 042537 481 QTLSLYNNSLIGELPSFFKSCSQLILMDLGKNGLSGEIPTWIGEGLPKLVVLSLKSNKFHGNIPFQVCQLSYIQILDLSL 560 (789)
Q Consensus 481 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~ 560 (789)
+.|++++|++++..|..|..+++|+.|++++|.+.+.+|..+. .+++|+.|++++|++.+.+|..+ ..++|+.|++++
T Consensus 407 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~ 484 (968)
T PLN00113 407 RRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKW-DMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSR 484 (968)
T ss_pred CEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhc-cCCCCcEEECcCceeeeecCccc-ccccceEEECcC
Confidence 9999999999988999999999999999999999988887766 68999999999999998888755 468999999999
Q ss_pred CcccccCCccccccccCcccCCCccccccCcccccccccccccccceeEEEeeccccccccccCceeEEEcccCcccccc
Q 042537 561 NNISGIIPKCLNNFTGMAQKSSSNLAITSNYTFERQGIEFLESYVDNVVLTWKGSQHEYRSTLGLVKILDFSMNKLSGTI 640 (789)
Q Consensus 561 N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 640 (789)
|++++..|..+.++++| +.|++++|++.+.+
T Consensus 485 n~l~~~~~~~~~~l~~L-------------------------------------------------~~L~Ls~N~l~~~~ 515 (968)
T PLN00113 485 NQFSGAVPRKLGSLSEL-------------------------------------------------MQLKLSENKLSGEI 515 (968)
T ss_pred CccCCccChhhhhhhcc-------------------------------------------------CEEECcCCcceeeC
Confidence 99999988887776665 89999999999999
Q ss_pred chhhhccccCcEEEccCCcceeecCcccccCCCCCEEeCCCCcccccCchhhhcCCCCCeEeccCCcccccCCCCCcccc
Q 042537 641 PEEIMDLVGLVALNLSRNNLTGQITPKIDQLKSLDFLDLSQNQFVGGIPSSLCQLSRLSVMNLSYNNLSGKIPLGTQLQS 720 (789)
Q Consensus 641 p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~ 720 (789)
|+.+..+++|++|+|++|.+++.+|..++.+++|+.|||++|++++.+|..+..+++|++|++++|+++|.+|..+++.+
T Consensus 516 p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~ 595 (968)
T PLN00113 516 PDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAFLA 595 (968)
T ss_pred ChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCcchhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCCCCCCCC
Q 042537 721 FNASVYAGNPELCGLP 736 (789)
Q Consensus 721 ~~~~~~~~n~~lc~~~ 736 (789)
+....+.|||.+|+.+
T Consensus 596 ~~~~~~~~n~~lc~~~ 611 (968)
T PLN00113 596 INASAVAGNIDLCGGD 611 (968)
T ss_pred cChhhhcCCccccCCc
Confidence 9999999999999864
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=1.2e-56 Score=541.29 Aligned_cols=518 Identities=32% Similarity=0.463 Sum_probs=391.5
Q ss_pred CCCCEEeCCCCCCCCCCCcccccCCCCCCEEecCCCcCCCCCCcccc-CCCCCcEEeccCccCCCCcchHHhhCCCCCCC
Q 042537 75 YHLRHLDLSENDFSGSRIPEFIGSLNKLRYLSLSSAEFEGPIPSQLG-NLSRLKYLDLSYINLNKSRDWLRIIDKLPSLR 153 (789)
Q Consensus 75 ~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~p~~~~-~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~ 153 (789)
.+++.|++++|.+++. .+..+..+++|++|+|++|++.+.+|..+. ++++|++|+|++|++++. +|. +.+++|+
T Consensus 69 ~~v~~L~L~~~~i~~~-~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~--~p~--~~l~~L~ 143 (968)
T PLN00113 69 SRVVSIDLSGKNISGK-ISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGS--IPR--GSIPNLE 143 (968)
T ss_pred CcEEEEEecCCCcccc-CChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccc--cCc--cccCCCC
Confidence 3678888888888775 677788888888888888888777776644 778888888888877653 232 3466677
Q ss_pred EEEcCCCCCCCCccccccccccCCCCCCeEEccCCCCCCCchhHHHhhcCCCcEEEccCCCCcccCchhhhcCCCCcEEE
Q 042537 154 TLNLEHCHLPPIIPSDLLHLNFSTSSLGALYLFENSLSSSIYPWLFNISSKLVVLDLDSNLLQGSLLEPFDRMVSLRTLY 233 (789)
Q Consensus 154 ~L~L~~n~l~~~~~~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 233 (789)
+|++++|.+.+..| ..+.++ ++|++|++++|.+.+.+|..+.++. +|++|++++|.+.+..|..++++++|+.|+
T Consensus 144 ~L~Ls~n~~~~~~p--~~~~~l--~~L~~L~L~~n~l~~~~p~~~~~l~-~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 218 (968)
T PLN00113 144 TLDLSNNMLSGEIP--NDIGSF--SSLKVLDLGGNVLVGKIPNSLTNLT-SLEFLTLASNQLVGQIPRELGQMKSLKWIY 218 (968)
T ss_pred EEECcCCcccccCC--hHHhcC--CCCCEEECccCcccccCChhhhhCc-CCCeeeccCCCCcCcCChHHcCcCCccEEE
Confidence 77777776665555 223333 5555555555555544554444433 455555555555544555555555555555
Q ss_pred CCCCCccEEecCCCcCcccchhhhhCCCCCCEEEccCCCCCCccChhhhhcCCCCcEEEccCCcccccccCCCCCcccce
Q 042537 234 LGFNELEELFLGKNRLNGTINQWLSRMYKLDALSLSGNSLTGVVTESVFSELSNLKALHLDDNSFTLKFSHDWIPPFQLI 313 (789)
Q Consensus 234 L~~n~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~ 313 (789)
++ +|.+.+.+|..++++++|++|++++|.+.+ ..+..+..+.+|+
T Consensus 219 L~----------~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~-------------------------~~p~~l~~l~~L~ 263 (968)
T PLN00113 219 LG----------YNNLSGEIPYEIGGLTSLNHLDLVYNNLTG-------------------------PIPSSLGNLKNLQ 263 (968)
T ss_pred Cc----------CCccCCcCChhHhcCCCCCEEECcCceecc-------------------------ccChhHhCCCCCC
Confidence 44 333444444445555555555555555544 4444444444444
Q ss_pred eEeccCccCCCCCchhccCCCCccEEEccCCcCCCCcchhHhhhccCCCeeeeccccccccCCCCCCCCCCCCCEEEccC
Q 042537 314 IILLGSCQMGPHFPKWLQTQNQIEVLDISDAGISDTVPDWFWDLSHTIADFNLSNNHIKGKLPNLSLRFDPFSSSIDISS 393 (789)
Q Consensus 314 ~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~ 393 (789)
.|++++|.+.+.+|..+..+++|++|++++|.+.+..|..+... ++|+.|++++|.+.+.+|
T Consensus 264 ~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l-~~L~~L~l~~n~~~~~~~----------------- 325 (968)
T PLN00113 264 YLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQL-QNLEILHLFSNNFTGKIP----------------- 325 (968)
T ss_pred EEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCC-CCCcEEECCCCccCCcCC-----------------
Confidence 44555555555778888899999999999999988777665432 344444444444443222
Q ss_pred CcccccCCCCCCCCcEEEcCCCcCccccchhcccCCCCCCEEEcCCCccccCCCcccccCCCCcEEEcCCCcCcccCCcc
Q 042537 394 NYFEGLIPPLPSNASVLNLSRNKFSESISFLCSINGHKLEFLDLSNNILSGRLPDCWMQFDRLAVLSLANNFFSGKIPKS 473 (789)
Q Consensus 394 n~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 473 (789)
..+.. +++|+.|++++|.+++.+|..+..+++|+.|++++|++.+..|..
T Consensus 326 --------~~~~~----------------------l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~ 375 (968)
T PLN00113 326 --------VALTS----------------------LPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEG 375 (968)
T ss_pred --------hhHhc----------------------CCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChh
Confidence 21111 178999999999999899999999999999999999999999999
Q ss_pred ccccCcccEEEccCCeeeeeCCcCccCCCCCcEEeCCCCcccccCchhhhhcCCCCcEEEcCCCcccccCCCCccCCCcC
Q 042537 474 MGFLHSIQTLSLYNNSLIGELPSFFKSCSQLILMDLGKNGLSGEIPTWIGEGLPKLVVLSLKSNKFHGNIPFQVCQLSYI 553 (789)
Q Consensus 474 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 553 (789)
+..+++|+.|++++|.+.+..|..+..+++|+.|++++|++++.+|..+. .+++|+.|++++|++++.++..+..+++|
T Consensus 376 ~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~-~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 454 (968)
T PLN00113 376 LCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFT-KLPLVYFLDISNNNLQGRINSRKWDMPSL 454 (968)
T ss_pred HhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHh-cCCCCCEEECcCCcccCccChhhccCCCC
Confidence 99999999999999999999999999999999999999999999998776 79999999999999999999989999999
Q ss_pred ceEeccCCcccccCCccccccccCcccCCCccccccCcccccccccccccccceeEEEeeccccccccccCceeEEEccc
Q 042537 554 QILDLSLNNISGIIPKCLNNFTGMAQKSSSNLAITSNYTFERQGIEFLESYVDNVVLTWKGSQHEYRSTLGLVKILDFSM 633 (789)
Q Consensus 554 ~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~ 633 (789)
+.|++++|++.+..|..+. . +.|+.||+++
T Consensus 455 ~~L~L~~n~~~~~~p~~~~-~-------------------------------------------------~~L~~L~ls~ 484 (968)
T PLN00113 455 QMLSLARNKFFGGLPDSFG-S-------------------------------------------------KRLENLDLSR 484 (968)
T ss_pred cEEECcCceeeeecCcccc-c-------------------------------------------------ccceEEECcC
Confidence 9999999999987776442 1 2358999999
Q ss_pred CccccccchhhhccccCcEEEccCCcceeecCcccccCCCCCEEeCCCCcccccCchhhhcCCCCCeEeccCCcccccCC
Q 042537 634 NKLSGTIPEEIMDLVGLVALNLSRNNLTGQITPKIDQLKSLDFLDLSQNQFVGGIPSSLCQLSRLSVMNLSYNNLSGKIP 713 (789)
Q Consensus 634 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p 713 (789)
|++++.+|..|.++++|+.|+|++|++++.+|..+..+++|++|+|++|.+++.+|..|..+++|++||+++|+++|.+|
T Consensus 485 n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p 564 (968)
T PLN00113 485 NQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIP 564 (968)
T ss_pred CccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CC-CccccccccccCCCCCCCCCC
Q 042537 714 LG-TQLQSFNASVYAGNPELCGLP 736 (789)
Q Consensus 714 ~~-~~~~~~~~~~~~~n~~lc~~~ 736 (789)
.. ..+..+....+.+|+..+..|
T Consensus 565 ~~l~~l~~L~~l~ls~N~l~~~~p 588 (968)
T PLN00113 565 KNLGNVESLVQVNISHNHLHGSLP 588 (968)
T ss_pred hhHhcCcccCEEeccCCcceeeCC
Confidence 75 345556667788888776544
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=3e-39 Score=327.80 Aligned_cols=232 Identities=23% Similarity=0.220 Sum_probs=122.2
Q ss_pred CCCCEEEcCCCccccCCCcccccCCCCcEEEcCCCcCcccCCccccccCcccEEEccCCeeeeeCCcCccCCCCCcEEeC
Q 042537 430 HKLEFLDLSNNILSGRLPDCWMQFDRLAVLSLANNFFSGKIPKSMGFLHSIQTLSLYNNSLIGELPSFFKSCSQLILMDL 509 (789)
Q Consensus 430 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 509 (789)
.+|..|.|++|+++...+..|.++++|+.|+|..|+|....--+|.++++|+.|.+..|.|.....+.|..|.++++|+|
T Consensus 197 nsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L 276 (873)
T KOG4194|consen 197 NSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNL 276 (873)
T ss_pred chheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeec
Confidence 34555555555555444555555555555555555555333345555555555555555555555555555555555555
Q ss_pred CCCcccccCchhhhhcCCCCcEEEcCCCcccccCCCCccCCCcCceEeccCCcccccCCccccccccCcccCCCcccccc
Q 042537 510 GKNGLSGEIPTWIGEGLPKLVVLSLKSNKFHGNIPFQVCQLSYIQILDLSLNNISGIIPKCLNNFTGMAQKSSSNLAITS 589 (789)
Q Consensus 510 s~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~ 589 (789)
+.|+++..-..|++ ++.+|+.|++++|.|..+.+......++|+.|+|++|+++...+..|..+..|
T Consensus 277 ~~N~l~~vn~g~lf-gLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~L------------ 343 (873)
T KOG4194|consen 277 ETNRLQAVNEGWLF-GLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQL------------ 343 (873)
T ss_pred ccchhhhhhccccc-ccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHh------------
Confidence 55555533334444 55555555555555555555555555555555555555555555554444433
Q ss_pred CcccccccccccccccceeEEEeeccccccccccCceeEEEcccCccccccchhhhccccCcEEEccCCcceeecCc---
Q 042537 590 NYTFERQGIEFLESYVDNVVLTWKGSQHEYRSTLGLVKILDFSMNKLSGTIPEEIMDLVGLVALNLSRNNLTGQITP--- 666 (789)
Q Consensus 590 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~--- 666 (789)
++|.|++|.+...-...|..+++|++|||++|.|+..|.+
T Consensus 344 -------------------------------------e~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~ 386 (873)
T KOG4194|consen 344 -------------------------------------EELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAV 386 (873)
T ss_pred -------------------------------------hhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchh
Confidence 4455555555433334445555555555555555544432
Q ss_pred ccccCCCCCEEeCCCCcccccCchhhhcCCCCCeEeccCCccccc
Q 042537 667 KIDQLKSLDFLDLSQNQFVGGIPSSLCQLSRLSVMNLSYNNLSGK 711 (789)
Q Consensus 667 ~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~ 711 (789)
.|..|++|+.|+|.+|+|..+...+|..++.|+.||+.+|.+...
T Consensus 387 ~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSI 431 (873)
T KOG4194|consen 387 AFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASI 431 (873)
T ss_pred hhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceee
Confidence 244455555555555555544444555555555555555555433
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=2.2e-39 Score=328.80 Aligned_cols=365 Identities=26% Similarity=0.289 Sum_probs=240.9
Q ss_pred CCEEeCCCCCCCCCCCcccccCCCCCCEEecCCCcCCCCCCccccCCCCCcEEeccCccCCCCcchHHhhCCCCCCCEEE
Q 042537 77 LRHLDLSENDFSGSRIPEFIGSLNKLRYLSLSSAEFEGPIPSQLGNLSRLKYLDLSYINLNKSRDWLRIIDKLPSLRTLN 156 (789)
Q Consensus 77 L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~ 156 (789)
-+.||+++|+++.+ -+.+|.++++|+.+++.+|.++ .+|.......+|+.|+|.+|.|+++.. +.+..++.|+.||
T Consensus 80 t~~LdlsnNkl~~i-d~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~sv~s--e~L~~l~alrslD 155 (873)
T KOG4194|consen 80 TQTLDLSNNKLSHI-DFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLISSVTS--EELSALPALRSLD 155 (873)
T ss_pred eeeeeccccccccC-cHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccccccH--HHHHhHhhhhhhh
Confidence 35677888777765 5666777778888888777777 567655666667777777777777644 6677777777777
Q ss_pred cCCCCCCCCccccccccccCCCCCCeEEccCCCCCCCchhHHHhhcCCCcEEEccCCCCcccCchhhhcCCCCcEEECCC
Q 042537 157 LEHCHLPPIIPSDLLHLNFSTSSLGALYLFENSLSSSIYPWLFNISSKLVVLDLDSNLLQGSLLEPFDRMVSLRTLYLGF 236 (789)
Q Consensus 157 L~~n~l~~~~~~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~ 236 (789)
||.|.|+.+.-..+. ...++++|+|++|.|+.+....|..+.+|..|.|+
T Consensus 156 LSrN~is~i~~~sfp-----------------------------~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLs- 205 (873)
T KOG4194|consen 156 LSRNLISEIPKPSFP-----------------------------AKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLS- 205 (873)
T ss_pred hhhchhhcccCCCCC-----------------------------CCCCceEEeeccccccccccccccccchheeeecc-
Confidence 777776554331111 11267777777777777777777777777777777
Q ss_pred CCccEEecCCCcCcccchhhhhCCCCCCEEEccCCCCCCccChhhhhcCCCCcEEEccCCcccccccCCCCCcccceeEe
Q 042537 237 NELEELFLGKNRLNGTINQWLSRMYKLDALSLSGNSLTGVVTESVFSELSNLKALHLDDNSFTLKFSHDWIPPFQLIIIL 316 (789)
Q Consensus 237 n~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~ 316 (789)
+|+++...+..|.++++|+.|+|..|+|. .+....|.++++|+.|.|..|+|.......|..+.+++.|+
T Consensus 206 ---------rNrittLp~r~Fk~L~~L~~LdLnrN~ir-ive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~ 275 (873)
T KOG4194|consen 206 ---------RNRITTLPQRSFKRLPKLESLDLNRNRIR-IVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLN 275 (873)
T ss_pred ---------cCcccccCHHHhhhcchhhhhhcccccee-eehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceee
Confidence 55555566677777888888888888776 55445677788888888888877766666666666666666
Q ss_pred ccCccCCCCCchhccCCCCccEEEccCCcCCCCcchhHhhhccCCCeeeeccccccccCCCCCCCCCCCCCEEEccCCcc
Q 042537 317 LGSCQMGPHFPKWLQTQNQIEVLDISDAGISDTVPDWFWDLSHTIADFNLSNNHIKGKLPNLSLRFDPFSSSIDISSNYF 396 (789)
Q Consensus 317 l~~~~~~~~~~~~l~~l~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~l 396 (789)
|+.|++...-..|+.+++.|+.|++|+|.|..+.++ .+..+
T Consensus 276 L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d--------------------------~Wsft------------- 316 (873)
T KOG4194|consen 276 LETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHID--------------------------SWSFT------------- 316 (873)
T ss_pred cccchhhhhhcccccccchhhhhccchhhhheeecc--------------------------hhhhc-------------
Confidence 666665555556666666666666666665533222 11111
Q ss_pred cccCCCCCCCCcEEEcCCCcCccccchhcccCCCCCCEEEcCCCccccCCCcccccCCCCcEEEcCCCcCcccCCccccc
Q 042537 397 EGLIPPLPSNASVLNLSRNKFSESISFLCSINGHKLEFLDLSNNILSGRLPDCWMQFDRLAVLSLANNFFSGKIPKSMGF 476 (789)
Q Consensus 397 ~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 476 (789)
++|++|+|++|+|+...+.+|..+..|++|+|++|.+...-..+|..
T Consensus 317 ---------------------------------qkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~ 363 (873)
T KOG4194|consen 317 ---------------------------------QKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVG 363 (873)
T ss_pred ---------------------------------ccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHH
Confidence 45666666666666556666666666666666666666555556666
Q ss_pred cCcccEEEccCCeeeeeCCc---CccCCCCCcEEeCCCCcccccCchhhhhcCCCCcEEEcCCCcccccCCCCccCCCcC
Q 042537 477 LHSIQTLSLYNNSLIGELPS---FFKSCSQLILMDLGKNGLSGEIPTWIGEGLPKLVVLSLKSNKFHGNIPFQVCQLSYI 553 (789)
Q Consensus 477 l~~L~~L~L~~n~l~~~~~~---~~~~l~~L~~L~ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 553 (789)
+++|++|||++|.+...+.+ .|.++++|+.|++.+|+++ .+|...|+++++|+.|+|.+|.|..+-|.+|..+ .|
T Consensus 364 lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk-~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~L 441 (873)
T KOG4194|consen 364 LSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLK-SIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-EL 441 (873)
T ss_pred hhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceee-ecchhhhccCcccceecCCCCcceeecccccccc-hh
Confidence 66666666666666554432 4566667777777777776 6666666667777777777777766666666666 66
Q ss_pred ceEecc
Q 042537 554 QILDLS 559 (789)
Q Consensus 554 ~~L~Ls 559 (789)
+.|-+.
T Consensus 442 k~Lv~n 447 (873)
T KOG4194|consen 442 KELVMN 447 (873)
T ss_pred hhhhhc
Confidence 665554
No 5
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=1.4e-41 Score=330.18 Aligned_cols=476 Identities=28% Similarity=0.361 Sum_probs=305.8
Q ss_pred CCCCCEEeCCCCCCCCCCCcccccCCCCCCEEecCCCcCCCCCCccccCCCCCcEEeccCccCCCCcchHHhhCCCCCCC
Q 042537 74 LYHLRHLDLSENDFSGSRIPEFIGSLNKLRYLSLSSAEFEGPIPSQLGNLSRLKYLDLSYINLNKSRDWLRIIDKLPSLR 153 (789)
Q Consensus 74 l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~ 153 (789)
-.-++.|++++|.+. .+...+.++..|++|++++|++. ..|.+++.+..++.|+.++|++.. +|+.++.+++|+
T Consensus 44 qv~l~~lils~N~l~--~l~~dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls~---lp~~i~s~~~l~ 117 (565)
T KOG0472|consen 44 QVDLQKLILSHNDLE--VLREDLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLSE---LPEQIGSLISLV 117 (565)
T ss_pred hcchhhhhhccCchh--hccHhhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHhh---ccHHHhhhhhhh
Confidence 345667777777776 34556677777777777777777 567777777777777777777776 567777777777
Q ss_pred EEEcCCCCCCCCccccccccccCCCCCCeEEccCCCCCCCchhHHHhhcCCCcEEEccCCCCcccCchhhhcCCCCcEEE
Q 042537 154 TLNLEHCHLPPIIPSDLLHLNFSTSSLGALYLFENSLSSSIYPWLFNISSKLVVLDLDSNLLQGSLLEPFDRMVSLRTLY 233 (789)
Q Consensus 154 ~L~L~~n~l~~~~~~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 233 (789)
.++.++|.+....++ ++.+ ..+..++..+|+++ ..|++++.+. ++..+++.+|++....|..+. ++.|++||
T Consensus 118 ~l~~s~n~~~el~~~---i~~~--~~l~dl~~~~N~i~-slp~~~~~~~-~l~~l~~~~n~l~~l~~~~i~-m~~L~~ld 189 (565)
T KOG0472|consen 118 KLDCSSNELKELPDS---IGRL--LDLEDLDATNNQIS-SLPEDMVNLS-KLSKLDLEGNKLKALPENHIA-MKRLKHLD 189 (565)
T ss_pred hhhccccceeecCch---HHHH--hhhhhhhccccccc-cCchHHHHHH-HHHHhhccccchhhCCHHHHH-HHHHHhcc
Confidence 777777777655442 2233 56677777777776 5666666666 788888888888866555554 88888888
Q ss_pred CCCCCccEEecCCCcCcccchhhhhCCCCCCEEEccCCCCCCccChhhhhcCCCCcEEEccCCcccccccCCCCCcccce
Q 042537 234 LGFNELEELFLGKNRLNGTINQWLSRMYKLDALSLSGNSLTGVVTESVFSELSNLKALHLDDNSFTLKFSHDWIPPFQLI 313 (789)
Q Consensus 234 L~~n~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~ 313 (789)
...|-++ .+|+.++.+.+|+.|+|..|++. .+|. |.+|..|++++++.|.|.
T Consensus 190 ~~~N~L~-----------tlP~~lg~l~~L~~LyL~~Nki~-~lPe--f~gcs~L~Elh~g~N~i~-------------- 241 (565)
T KOG0472|consen 190 CNSNLLE-----------TLPPELGGLESLELLYLRRNKIR-FLPE--FPGCSLLKELHVGENQIE-------------- 241 (565)
T ss_pred cchhhhh-----------cCChhhcchhhhHHHHhhhcccc-cCCC--CCccHHHHHHHhcccHHH--------------
Confidence 8644333 45777888888888888888887 7775 888888888888888776
Q ss_pred eEeccCccCCCCCchhc-cCCCCccEEEccCCcCCCCcchhHhhhccCCCeeeeccccccccCCCCCCCCCCCCCEEEcc
Q 042537 314 IILLGSCQMGPHFPKWL-QTQNQIEVLDISDAGISDTVPDWFWDLSHTIADFNLSNNHIKGKLPNLSLRFDPFSSSIDIS 392 (789)
Q Consensus 314 ~L~l~~~~~~~~~~~~l-~~l~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~ 392 (789)
.+|... ..++++..||+.+|++++ .|..+.- ..+|..||+++|.++ .+|. .++.+
T Consensus 242 -----------~lpae~~~~L~~l~vLDLRdNklke-~Pde~cl-LrsL~rLDlSNN~is-~Lp~-sLgnl--------- 297 (565)
T KOG0472|consen 242 -----------MLPAEHLKHLNSLLVLDLRDNKLKE-VPDEICL-LRSLERLDLSNNDIS-SLPY-SLGNL--------- 297 (565)
T ss_pred -----------hhHHHHhcccccceeeecccccccc-CchHHHH-hhhhhhhcccCCccc-cCCc-ccccc---------
Confidence 344433 356666677777776663 3333332 224555555555554 2332 22222
Q ss_pred CCcccccCCCCCCCCcEEEcCCCcCccccchhcccCCCCCCEEEcCCCccccCCCccccc-----CCCCcE----EEcCC
Q 042537 393 SNYFEGLIPPLPSNASVLNLSRNKFSESISFLCSINGHKLEFLDLSNNILSGRLPDCWMQ-----FDRLAV----LSLAN 463 (789)
Q Consensus 393 ~n~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~-----l~~L~~----L~L~~ 463 (789)
.|+.|.+.+|.+..+-.+.+.+ ++.|+. =-++.
T Consensus 298 --------------------------------------hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~ 339 (565)
T KOG0472|consen 298 --------------------------------------HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQ 339 (565)
T ss_pred --------------------------------------eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCC
Confidence 2333444444332110000000 000100 00000
Q ss_pred Cc---------CcccCCccccccCcccEEEccCCeeeeeCCcCccCCC--CCcEEeCCCCcccccCchhhhhcCCCCc-E
Q 042537 464 NF---------FSGKIPKSMGFLHSIQTLSLYNNSLIGELPSFFKSCS--QLILMDLGKNGLSGEIPTWIGEGLPKLV-V 531 (789)
Q Consensus 464 n~---------l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~--~L~~L~ls~n~l~~~~p~~~~~~l~~L~-~ 531 (789)
-. ..+..| ....+.+.+.|++++-+++.+..+.|..-. -....+++.|++. ++|..+.. +..+. .
T Consensus 340 se~~~e~~~t~~~~~~~-~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~-lkelvT~ 416 (565)
T KOG0472|consen 340 SEGGTETAMTLPSESFP-DIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVE-LKELVTD 416 (565)
T ss_pred CcccccccCCCCCCccc-chhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHh-hhhhhhHH-HHHHHHH
Confidence 00 000111 122345667777777777743333333222 2667788888887 77776652 33333 3
Q ss_pred EEcCCCcccccCCCCccCCCcCceEeccCCcccccCCccccccccCcccCCCccccccCcccccccccccccccceeEEE
Q 042537 532 LSLKSNKFHGNIPFQVCQLSYIQILDLSLNNISGIIPKCLNNFTGMAQKSSSNLAITSNYTFERQGIEFLESYVDNVVLT 611 (789)
Q Consensus 532 L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 611 (789)
+.+++|.+. .+|..++.+++|..|++++|.+. .+|..++.+..|
T Consensus 417 l~lsnn~is-fv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~L---------------------------------- 460 (565)
T KOG0472|consen 417 LVLSNNKIS-FVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRL---------------------------------- 460 (565)
T ss_pred HHhhcCccc-cchHHHHhhhcceeeecccchhh-hcchhhhhhhhh----------------------------------
Confidence 445555544 66777778888888888887776 456555555444
Q ss_pred eeccccccccccCceeEEEcccCccccccchhhhccccCcEEEccCCcceeecCcccccCCCCCEEeCCCCcccccCchh
Q 042537 612 WKGSQHEYRSTLGLVKILDFSMNKLSGTIPEEIMDLVGLVALNLSRNNLTGQITPKIDQLKSLDFLDLSQNQFVGGIPSS 691 (789)
Q Consensus 612 ~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~ 691 (789)
+.||+|+|++. .+|..+..+..++.+-.++|++....|..+.+|.+|..|||.+|.+. .+|..
T Consensus 461 ---------------q~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~ 523 (565)
T KOG0472|consen 461 ---------------QTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPI 523 (565)
T ss_pred ---------------heecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChh
Confidence 78888888887 78888777777777777778888666666888888888888888888 67778
Q ss_pred hhcCCCCCeEeccCCccc
Q 042537 692 LCQLSRLSVMNLSYNNLS 709 (789)
Q Consensus 692 l~~l~~L~~L~ls~N~l~ 709 (789)
++++++|++|++.+|+|+
T Consensus 524 LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 524 LGNMTNLRHLELDGNPFR 541 (565)
T ss_pred hccccceeEEEecCCccC
Confidence 888888999999988887
No 6
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=1.9e-38 Score=308.36 Aligned_cols=480 Identities=25% Similarity=0.286 Sum_probs=325.8
Q ss_pred ccCCCCCCEEecCCCcCCCCCCccccCCCCCcEEeccCccCCCCcchHHhhCCCCCCCEEEcCCCCCCCCcccccccccc
Q 042537 96 IGSLNKLRYLSLSSAEFEGPIPSQLGNLSRLKYLDLSYINLNKSRDWLRIIDKLPSLRTLNLEHCHLPPIIPSDLLHLNF 175 (789)
Q Consensus 96 ~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l 175 (789)
+..-..|+.|.+++|.+. .+.+.+.++..|.+|++++|++.. +|.+++.+..++.++.++|++...++. ....
T Consensus 41 wW~qv~l~~lils~N~l~-~l~~dl~nL~~l~vl~~~~n~l~~---lp~aig~l~~l~~l~vs~n~ls~lp~~---i~s~ 113 (565)
T KOG0472|consen 41 WWEQVDLQKLILSHNDLE-VLREDLKNLACLTVLNVHDNKLSQ---LPAAIGELEALKSLNVSHNKLSELPEQ---IGSL 113 (565)
T ss_pred hhhhcchhhhhhccCchh-hccHhhhcccceeEEEeccchhhh---CCHHHHHHHHHHHhhcccchHhhccHH---Hhhh
Confidence 444567888888888887 555678888888888888888887 677888888888888888887654432 2222
Q ss_pred CCCCCCeEEccCCCCCCCchhHHHhhcCCCcEEEccCCCCcccCchhhhcCCCCcEEECCCCCccEEecCCCcCcccchh
Q 042537 176 STSSLGALYLFENSLSSSIYPWLFNISSKLVVLDLDSNLLQGSLLEPFDRMVSLRTLYLGFNELEELFLGKNRLNGTINQ 255 (789)
Q Consensus 176 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~L~~L~L~~n~l~~~~~~ 255 (789)
.++.+++.++|.+. .++++++... .++.++..+|++.. .|+++..+.+|..+++.+ |++....|.
T Consensus 114 --~~l~~l~~s~n~~~-el~~~i~~~~-~l~dl~~~~N~i~s-lp~~~~~~~~l~~l~~~~----------n~l~~l~~~ 178 (565)
T KOG0472|consen 114 --ISLVKLDCSSNELK-ELPDSIGRLL-DLEDLDATNNQISS-LPEDMVNLSKLSKLDLEG----------NKLKALPEN 178 (565)
T ss_pred --hhhhhhhcccccee-ecCchHHHHh-hhhhhhcccccccc-CchHHHHHHHHHHhhccc----------cchhhCCHH
Confidence 56666666666665 5566666665 66666666666663 345555555555555553 333333333
Q ss_pred hhhCCCCCCEEEccCCCCCCccChhhhhcCCCCcEEEccCCcccccccCCCCCcccceeEeccCccCCCCCchhccCCCC
Q 042537 256 WLSRMYKLDALSLSGNSLTGVVTESVFSELSNLKALHLDDNSFTLKFSHDWIPPFQLIIILLGSCQMGPHFPKWLQTQNQ 335 (789)
Q Consensus 256 ~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~ 335 (789)
.+. ++.|++||.-.|.+. .+|+ .++.+.+|..|++..|++. ..| .|.++..
T Consensus 179 ~i~-m~~L~~ld~~~N~L~-tlP~-~lg~l~~L~~LyL~~Nki~-------------------------~lP-ef~gcs~ 229 (565)
T KOG0472|consen 179 HIA-MKRLKHLDCNSNLLE-TLPP-ELGGLESLELLYLRRNKIR-------------------------FLP-EFPGCSL 229 (565)
T ss_pred HHH-HHHHHhcccchhhhh-cCCh-hhcchhhhHHHHhhhcccc-------------------------cCC-CCCccHH
Confidence 333 555666666666554 4454 2555555555555555554 334 4555666
Q ss_pred ccEEEccCCcCCCCcchhHhhhccCCCeeeeccccccccCCCCCCCCCCCCCEEEccCCcccccCCCCCCCCcEEEcCCC
Q 042537 336 IEVLDISDAGISDTVPDWFWDLSHTIADFNLSNNHIKGKLPNLSLRFDPFSSSIDISSNYFEGLIPPLPSNASVLNLSRN 415 (789)
Q Consensus 336 L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n 415 (789)
|++++++.|.|. ..|...... ++++.+||+++|
T Consensus 230 L~Elh~g~N~i~-~lpae~~~~----------------------------------------------L~~l~vLDLRdN 262 (565)
T KOG0472|consen 230 LKELHVGENQIE-MLPAEHLKH----------------------------------------------LNSLLVLDLRDN 262 (565)
T ss_pred HHHHHhcccHHH-hhHHHHhcc----------------------------------------------cccceeeecccc
Confidence 666666665554 223222211 234555666666
Q ss_pred cCccccchhcccCCCCCCEEEcCCCccccCCCcccccCCCCcEEEcCCCcCcccCCccccccC--cccEEE-------cc
Q 042537 416 KFSESISFLCSINGHKLEFLDLSNNILSGRLPDCWMQFDRLAVLSLANNFFSGKIPKSMGFLH--SIQTLS-------LY 486 (789)
Q Consensus 416 ~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~--~L~~L~-------L~ 486 (789)
++.+.+...|.. .+|++||+|+|.|+ ..|..++++ .|+.|.+.+|.+..+-.+.+.+-+ -|++|. ++
T Consensus 263 klke~Pde~clL--rsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS 338 (565)
T KOG0472|consen 263 KLKEVPDEICLL--RSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLS 338 (565)
T ss_pred ccccCchHHHHh--hhhhhhcccCCccc-cCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCC
Confidence 666666666665 78999999999998 677788888 899999999988743222222111 122221 11
Q ss_pred CCeee----ee-CCcC---ccCCCCCcEEeCCCCcccccCchhhhhcCCC---CcEEEcCCCcccccCCCCccCCCcCce
Q 042537 487 NNSLI----GE-LPSF---FKSCSQLILMDLGKNGLSGEIPTWIGEGLPK---LVVLSLKSNKFHGNIPFQVCQLSYIQI 555 (789)
Q Consensus 487 ~n~l~----~~-~~~~---~~~l~~L~~L~ls~n~l~~~~p~~~~~~l~~---L~~L~L~~n~l~~~~~~~~~~l~~L~~ 555 (789)
.-.-. .. .+.. .....+.+.|++++-+++ .+|..+|+ ... ....+++.|++. .+|..+..+..+.+
T Consensus 339 ~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt-~VPdEVfe-a~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT 415 (565)
T KOG0472|consen 339 QSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLT-LVPDEVFE-AAKSEIVTSVNFSKNQLC-ELPKRLVELKELVT 415 (565)
T ss_pred CCcccccccCCCCCCcccchhhhhhhhhhcccccccc-cCCHHHHH-HhhhcceEEEecccchHh-hhhhhhHHHHHHHH
Confidence 11000 00 1111 223456788999999998 89988885 333 678889999987 67777777766655
Q ss_pred E-eccCCcccccCCccccccccCcccCCCccccccCcccccccccccccccceeEEEeeccccccccccCceeEEEcccC
Q 042537 556 L-DLSLNNISGIIPKCLNNFTGMAQKSSSNLAITSNYTFERQGIEFLESYVDNVVLTWKGSQHEYRSTLGLVKILDFSMN 634 (789)
Q Consensus 556 L-~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N 634 (789)
. .+++|.+ +.+|..+..++++ +.|+|++|
T Consensus 416 ~l~lsnn~i-sfv~~~l~~l~kL-------------------------------------------------t~L~L~NN 445 (565)
T KOG0472|consen 416 DLVLSNNKI-SFVPLELSQLQKL-------------------------------------------------TFLDLSNN 445 (565)
T ss_pred HHHhhcCcc-ccchHHHHhhhcc-------------------------------------------------eeeecccc
Confidence 4 4444444 4566555555544 89999999
Q ss_pred ccccccchhhhccccCcEEEccCCcceeecCcccccCCCCCEEeCCCCcccccCchhhhcCCCCCeEeccCCcccccCCC
Q 042537 635 KLSGTIPEEIMDLVGLVALNLSRNNLTGQITPKIDQLKSLDFLDLSQNQFVGGIPSSLCQLSRLSVMNLSYNNLSGKIPL 714 (789)
Q Consensus 635 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~ 714 (789)
-+. .+|.+++.+..|+.||+|+|++. .+|..+-.+..+|.+-.++|++....|+.+.++.+|.+||+.+|.+....|.
T Consensus 446 ~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq~IPp~ 523 (565)
T KOG0472|consen 446 LLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQQIPPI 523 (565)
T ss_pred hhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchhhCChh
Confidence 998 89999999999999999999998 8899988888999999999999988888899999999999999999866666
Q ss_pred CCccccccccccCCCCCC
Q 042537 715 GTQLQSFNASVYAGNPEL 732 (789)
Q Consensus 715 ~~~~~~~~~~~~~~n~~l 732 (789)
-+....+....+.|||.-
T Consensus 524 LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 524 LGNMTNLRHLELDGNPFR 541 (565)
T ss_pred hccccceeEEEecCCccC
Confidence 678888888889999764
No 7
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=100.00 E-value=3.5e-36 Score=322.11 Aligned_cols=483 Identities=23% Similarity=0.260 Sum_probs=333.5
Q ss_pred EecCCCcCCCCCCccccCCCCCcEEeccCccCCCCcchHHhhCCCCCCCEEEcCCCCCCCCccccccccccCCCCCCeEE
Q 042537 105 LSLSSAEFEGPIPSQLGNLSRLKYLDLSYINLNKSRDWLRIIDKLPSLRTLNLEHCHLPPIIPSDLLHLNFSTSSLGALY 184 (789)
Q Consensus 105 L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~~~L~~L~ 184 (789)
+|++...+. .+|..+-.-..++.|+++.|-+...+ + +.+.+.-+|+.||+++|++.
T Consensus 3 vd~s~~~l~-~ip~~i~~~~~~~~ln~~~N~~l~~p-l-~~~~~~v~L~~l~lsnn~~~--------------------- 58 (1081)
T KOG0618|consen 3 VDASDEQLE-LIPEQILNNEALQILNLRRNSLLSRP-L-EFVEKRVKLKSLDLSNNQIS--------------------- 58 (1081)
T ss_pred cccccccCc-ccchhhccHHHHHhhhccccccccCc-h-HHhhheeeeEEeeccccccc---------------------
Confidence 556666665 55655555455677777766655532 1 23333344555555555443
Q ss_pred ccCCCCCCCchhHHHhhcCCCcEEEccCCCCcccCchhhhcCCCCcEEECCCCCccEEecCCCcCcccchhhhhCCCCCC
Q 042537 185 LFENSLSSSIYPWLFNISSKLVVLDLDSNLLQGSLLEPFDRMVSLRTLYLGFNELEELFLGKNRLNGTINQWLSRMYKLD 264 (789)
Q Consensus 185 l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~L~~L~L~~n~l~~~~~~~l~~l~~L~ 264 (789)
..|..+-... +|+.|+++.|.|. ..|.+..++.+|+++.|.+|+++ ..|..+..+.+|+
T Consensus 59 --------~fp~~it~l~-~L~~ln~s~n~i~-~vp~s~~~~~~l~~lnL~~n~l~-----------~lP~~~~~lknl~ 117 (1081)
T KOG0618|consen 59 --------SFPIQITLLS-HLRQLNLSRNYIR-SVPSSCSNMRNLQYLNLKNNRLQ-----------SLPASISELKNLQ 117 (1081)
T ss_pred --------cCCchhhhHH-HHhhcccchhhHh-hCchhhhhhhcchhheeccchhh-----------cCchhHHhhhccc
Confidence 3344444444 7888888888887 45577788888888888755544 3577788888888
Q ss_pred EEEccCCCCCCccChhhhhcCCCCcEEEccCCcccccccCCCCCcccceeEeccCccCCCCCchhccCCCCccEEEccCC
Q 042537 265 ALSLSGNSLTGVVTESVFSELSNLKALHLDDNSFTLKFSHDWIPPFQLIIILLGSCQMGPHFPKWLQTQNQIEVLDISDA 344 (789)
Q Consensus 265 ~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~n 344 (789)
+|+++.|.+. .+|. .+..+..+..+..++|.-... +.. ..++.+++..+.+.+.++.....++. .+|+.+|
T Consensus 118 ~LdlS~N~f~-~~Pl-~i~~lt~~~~~~~s~N~~~~~----lg~-~~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N 188 (1081)
T KOG0618|consen 118 YLDLSFNHFG-PIPL-VIEVLTAEEELAASNNEKIQR----LGQ-TSIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYN 188 (1081)
T ss_pred ccccchhccC-CCch-hHHhhhHHHHHhhhcchhhhh----hcc-ccchhhhhhhhhcccchhcchhhhhe--eeecccc
Confidence 8888888887 6776 578888888888888821111 111 12677777777777777766666665 6888888
Q ss_pred cCCCCcchhHhhhccCCCeeeeccccccccCCCCCCCCCCCCCEEEccCCcccccCCCC-CCCCcEEEcCCCcCccccch
Q 042537 345 GISDTVPDWFWDLSHTIADFNLSNNHIKGKLPNLSLRFDPFSSSIDISSNYFEGLIPPL-PSNASVLNLSRNKFSESISF 423 (789)
Q Consensus 345 ~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~-~~~L~~L~l~~n~i~~~~~~ 423 (789)
.+.... ....+.|+.+....|++.. + -...++++.|+.++|.++...+.. +.+++++++++|++++.+..
T Consensus 189 ~~~~~d----ls~~~~l~~l~c~rn~ls~-l----~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~lp~w 259 (1081)
T KOG0618|consen 189 EMEVLD----LSNLANLEVLHCERNQLSE-L----EISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSNLPEW 259 (1081)
T ss_pred hhhhhh----hhhccchhhhhhhhcccce-E----EecCcchheeeeccCcceeeccccccccceeeecchhhhhcchHH
Confidence 876211 1233577777777777662 1 122345778888888887554433 67788888888888877744
Q ss_pred hcccCCCCCCEEEcCCCccccCCCcccccCCCCcEEEcCCCcCcccCCccccccCcccEEEccCCeeeeeCCcCccCCC-
Q 042537 424 LCSINGHKLEFLDLSNNILSGRLPDCWMQFDRLAVLSLANNFFSGKIPKSMGFLHSIQTLSLYNNSLIGELPSFFKSCS- 502 (789)
Q Consensus 424 ~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~- 502 (789)
.+.. .+|+.++..+|.++ .+|..+....+|+.|.+.+|.+. .+|......++|++|+|..|++....+..|.-..
T Consensus 260 i~~~--~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~ 335 (1081)
T KOG0618|consen 260 IGAC--ANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNA 335 (1081)
T ss_pred HHhc--ccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeeeehhccccccchHHHhhhhH
Confidence 4433 77888888888885 67777777788888888888887 4566667778888888888888744333333333
Q ss_pred CCcEEeCCCCcccccCchhhhhcCCCCcEEEcCCCcccccCCCCccCCCcCceEeccCCcccccCCccccccccCcccCC
Q 042537 503 QLILMDLGKNGLSGEIPTWIGEGLPKLVVLSLKSNKFHGNIPFQVCQLSYIQILDLSLNNISGIIPKCLNNFTGMAQKSS 582 (789)
Q Consensus 503 ~L~~L~ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~ 582 (789)
+|+.|+.+.|++. ..|..-.+..+.|+.|++.+|.++...-..+.+...|++|+|++|++......++.++..|
T Consensus 336 ~l~~ln~s~n~l~-~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~L----- 409 (1081)
T KOG0618|consen 336 SLNTLNVSSNKLS-TLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEEL----- 409 (1081)
T ss_pred HHHHHhhhhcccc-ccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHh-----
Confidence 3677777878777 5664433456778888888888887766677788888888888888875554555555544
Q ss_pred CccccccCcccccccccccccccceeEEEeeccccccccccCceeEEEcccCccccccchhhhccccCcEEEccCCccee
Q 042537 583 SNLAITSNYTFERQGIEFLESYVDNVVLTWKGSQHEYRSTLGLVKILDFSMNKLSGTIPEEIMDLVGLVALNLSRNNLTG 662 (789)
Q Consensus 583 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 662 (789)
+.|+||+|+++ .+|+.+..+..|++|...+|++.
T Consensus 410 --------------------------------------------eeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~- 443 (1081)
T KOG0618|consen 410 --------------------------------------------EELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL- 443 (1081)
T ss_pred --------------------------------------------HHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-
Confidence 78889999988 78888888888999988888887
Q ss_pred ecCcccccCCCCCEEeCCCCcccccCchhhhcCCCCCeEeccCCc
Q 042537 663 QITPKIDQLKSLDFLDLSQNQFVGGIPSSLCQLSRLSVMNLSYNN 707 (789)
Q Consensus 663 ~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~ 707 (789)
..| .+.++++|+.+|+|.|+++...-..-..-+.|++||+++|.
T Consensus 444 ~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 444 SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNT 487 (1081)
T ss_pred ech-hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCc
Confidence 566 78888899999999998875433222222788999999886
No 8
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=100.00 E-value=4.8e-35 Score=313.43 Aligned_cols=420 Identities=25% Similarity=0.311 Sum_probs=257.1
Q ss_pred cEEEEEcCCCCCCCCcccccC-ccccCCCCCCEEeCCCCCCCCCCCcccccCCCCCCEEecCCCcCCCCCCccccCCCCC
Q 042537 48 HVIVLDLQVLVHSEPLKGTIS-PSLLKLYHLRHLDLSENDFSGSRIPEFIGSLNKLRYLSLSSAEFEGPIPSQLGNLSRL 126 (789)
Q Consensus 48 ~v~~l~L~~~~~~~~l~~~l~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L 126 (789)
.++.|++.. +.+. ..| +.+.+.-+|+.||+++|.+. .+|..+..+.+|+.|+++.|.|. ..|.+..++.+|
T Consensus 22 ~~~~ln~~~----N~~l-~~pl~~~~~~v~L~~l~lsnn~~~--~fp~~it~l~~L~~ln~s~n~i~-~vp~s~~~~~~l 93 (1081)
T KOG0618|consen 22 ALQILNLRR----NSLL-SRPLEFVEKRVKLKSLDLSNNQIS--SFPIQITLLSHLRQLNLSRNYIR-SVPSSCSNMRNL 93 (1081)
T ss_pred HHHhhhccc----cccc-cCchHHhhheeeeEEeeccccccc--cCCchhhhHHHHhhcccchhhHh-hCchhhhhhhcc
Confidence 366777765 2221 212 23344445888888888887 57888888888888888888888 677888888888
Q ss_pred cEEeccCccCCCCcchHHhhCCCCCCCEEEcCCCCCCCCccccccccccCCCCCCeEEccCCCCCCCchhHHHhhcCCCc
Q 042537 127 KYLDLSYINLNKSRDWLRIIDKLPSLRTLNLEHCHLPPIIPSDLLHLNFSTSSLGALYLFENSLSSSIYPWLFNISSKLV 206 (789)
Q Consensus 127 ~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~ 206 (789)
++|.|.+|.+.. +|..+..+.+|+.|++++|.+...+. .+..+ +.+.++..++|.....+ .. . .++
T Consensus 94 ~~lnL~~n~l~~---lP~~~~~lknl~~LdlS~N~f~~~Pl---~i~~l--t~~~~~~~s~N~~~~~l----g~-~-~ik 159 (1081)
T KOG0618|consen 94 QYLNLKNNRLQS---LPASISELKNLQYLDLSFNHFGPIPL---VIEVL--TAEEELAASNNEKIQRL----GQ-T-SIK 159 (1081)
T ss_pred hhheeccchhhc---CchhHHhhhcccccccchhccCCCch---hHHhh--hHHHHHhhhcchhhhhh----cc-c-cch
Confidence 888888888877 67788888888888888888754332 22222 56667777777221111 11 1 377
Q ss_pred EEEccCCCCcccCchhhhcCCCCcEEECCCCCccEEecCCCcCcccchhhhhCCCCCCEEEccCCCCCCccChhhhhcCC
Q 042537 207 VLDLDSNLLQGSLLEPFDRMVSLRTLYLGFNELEELFLGKNRLNGTINQWLSRMYKLDALSLSGNSLTGVVTESVFSELS 286 (789)
Q Consensus 207 ~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~ 286 (789)
.+++..|.+.+.++.++..+.. .|+|.+|.+..++++ .+.+|+.|....|++.. +. -.-+
T Consensus 160 ~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~~~dls-------------~~~~l~~l~c~rn~ls~-l~----~~g~ 219 (1081)
T KOG0618|consen 160 KLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEMEVLDLS-------------NLANLEVLHCERNQLSE-LE----ISGP 219 (1081)
T ss_pred hhhhhhhhcccchhcchhhhhe--eeecccchhhhhhhh-------------hccchhhhhhhhcccce-EE----ecCc
Confidence 7788888777777777776666 678887766655443 45677777777777762 21 2346
Q ss_pred CCcEEEccCCcccccccCCCCCcccceeEeccCccCCCCCchhccCCCCccEEEccCCcCCCCcchhHhhhccCCCeeee
Q 042537 287 NLKALHLDDNSFTLKFSHDWIPPFQLIIILLGSCQMGPHFPKWLQTQNQIEVLDISDAGISDTVPDWFWDLSHTIADFNL 366 (789)
Q Consensus 287 ~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~l 366 (789)
+|+.|+.++|.++.... ..-..++++++++.+++. .+|.|+..+.+|+.++..+|.++ ..|..+... .+|+.|.+
T Consensus 220 ~l~~L~a~~n~l~~~~~--~p~p~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~-~~L~~l~~ 294 (1081)
T KOG0618|consen 220 SLTALYADHNPLTTLDV--HPVPLNLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLV-ALPLRISRI-TSLVSLSA 294 (1081)
T ss_pred chheeeeccCcceeecc--ccccccceeeecchhhhh-cchHHHHhcccceEecccchhHH-hhHHHHhhh-hhHHHHHh
Confidence 77778888777762211 112234555555555554 44466666666666666666663 223222221 13333333
Q ss_pred ccccccccCCCCCCCCCCCCCEEEccCCcccccCCCCCCCCcEEEcCCCcCccccchhcccCCCCCCEEEcCCCccccCC
Q 042537 367 SNNHIKGKLPNLSLRFDPFSSSIDISSNYFEGLIPPLPSNASVLNLSRNKFSESISFLCSINGHKLEFLDLSNNILSGRL 446 (789)
Q Consensus 367 ~~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~ 446 (789)
.+|.+. .. ++.... .+.|++|+|..|++....
T Consensus 295 ~~nel~-------------------------yi---------------------p~~le~--~~sL~tLdL~~N~L~~lp 326 (1081)
T KOG0618|consen 295 AYNELE-------------------------YI---------------------PPFLEG--LKSLRTLDLQSNNLPSLP 326 (1081)
T ss_pred hhhhhh-------------------------hC---------------------CCcccc--cceeeeeeehhccccccc
Confidence 333332 11 111111 156777777777776333
Q ss_pred CcccccCCC-CcEEEcCCCcCcccCCccccccCcccEEEccCCeeeeeCCcCccCCCCCcEEeCCCCcccccCchhhhhc
Q 042537 447 PDCWMQFDR-LAVLSLANNFFSGKIPKSMGFLHSIQTLSLYNNSLIGELPSFFKSCSQLILMDLGKNGLSGEIPTWIGEG 525 (789)
Q Consensus 447 ~~~~~~l~~-L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~ 525 (789)
+..|.-... |..|+.+.|++.......=...+.|+.|++.+|.++...-..+.+.+.|+.|+|++|++. .+|+....+
T Consensus 327 ~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~-~fpas~~~k 405 (1081)
T KOG0618|consen 327 DNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLN-SFPASKLRK 405 (1081)
T ss_pred hHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccc-cCCHHHHhc
Confidence 323333322 666667777766322111123456777777777777665566677777777777777776 777766666
Q ss_pred CCCCcEEEcCCCcccccCCCCccCCCcCceEeccCCccc
Q 042537 526 LPKLVVLSLKSNKFHGNIPFQVCQLSYIQILDLSLNNIS 564 (789)
Q Consensus 526 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 564 (789)
++.|++|+|++|+++ .+|..+..+..|++|...+|++.
T Consensus 406 le~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~ 443 (1081)
T KOG0618|consen 406 LEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL 443 (1081)
T ss_pred hHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee
Confidence 677777777777776 45566666666666666666554
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.97 E-value=9.6e-33 Score=282.31 Aligned_cols=368 Identities=28% Similarity=0.388 Sum_probs=203.0
Q ss_pred CCCCCEEeCCCCCCCCCCCcccccCCCCCCEEecCCCcCCCCCCccccCCCCCcEEeccCccCCCCcchHHhhCCCCCCC
Q 042537 74 LYHLRHLDLSENDFSGSRIPEFIGSLNKLRYLSLSSAEFEGPIPSQLGNLSRLKYLDLSYINLNKSRDWLRIIDKLPSLR 153 (789)
Q Consensus 74 l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~ 153 (789)
++-.|-.|+++|.++|..+|.....+++++.|.|...++. .+|+.++.+.+|++|.+++|++..+ -..++.++.|+
T Consensus 6 LpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~~v---hGELs~Lp~LR 81 (1255)
T KOG0444|consen 6 LPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLISV---HGELSDLPRLR 81 (1255)
T ss_pred cceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhHhh---hhhhccchhhH
Confidence 4455666777777776567777777777777777777666 5677777777777777777776653 34566666666
Q ss_pred EEEcCCCCCCCC-ccccccccccCCCCCCeEEccCCCCCCCchhHHHhhcCCCcEEEccCCCCcccCchhhhcCCCCcEE
Q 042537 154 TLNLEHCHLPPI-IPSDLLHLNFSTSSLGALYLFENSLSSSIYPWLFNISSKLVVLDLDSNLLQGSLLEPFDRMVSLRTL 232 (789)
Q Consensus 154 ~L~L~~n~l~~~-~~~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 232 (789)
.+.+.+|++... +| ..+..+ ..|+.|+|++|++. .+|..+-... ++-+|+||+|+|..+...-|.++..|-.|
T Consensus 82 sv~~R~N~LKnsGiP--~diF~l--~dLt~lDLShNqL~-EvP~~LE~AK-n~iVLNLS~N~IetIPn~lfinLtDLLfL 155 (1255)
T KOG0444|consen 82 SVIVRDNNLKNSGIP--TDIFRL--KDLTILDLSHNQLR-EVPTNLEYAK-NSIVLNLSYNNIETIPNSLFINLTDLLFL 155 (1255)
T ss_pred HHhhhccccccCCCC--chhccc--ccceeeecchhhhh-hcchhhhhhc-CcEEEEcccCccccCCchHHHhhHhHhhh
Confidence 666666665321 11 111111 33333333333333 3333333222 44555555555554444444455555555
Q ss_pred ECCCCCccEEecCCCcCcccchhhhhCCCCCCEEEccCCCCCCccChhhhhcCCCCcEEEccCCcccccccCCCCCcccc
Q 042537 233 YLGFNELEELFLGKNRLNGTINQWLSRMYKLDALSLSGNSLTGVVTESVFSELSNLKALHLDDNSFTLKFSHDWIPPFQL 312 (789)
Q Consensus 233 ~L~~n~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L 312 (789)
||++|+|+. +|..+..+..|++|+|++|.+. ......+..+++|+.|++++.+-+
T Consensus 156 DLS~NrLe~-----------LPPQ~RRL~~LqtL~Ls~NPL~-hfQLrQLPsmtsL~vLhms~TqRT------------- 210 (1255)
T KOG0444|consen 156 DLSNNRLEM-----------LPPQIRRLSMLQTLKLSNNPLN-HFQLRQLPSMTSLSVLHMSNTQRT------------- 210 (1255)
T ss_pred ccccchhhh-----------cCHHHHHHhhhhhhhcCCChhh-HHHHhcCccchhhhhhhcccccch-------------
Confidence 555333332 2333444445555555555443 111112333334444444443221
Q ss_pred eeEeccCccCCCCCchhccCCCCccEEEccCCcCCCCcchhHhhhccCCCeeeeccccccccCCCCCCCCCCCCCEEEcc
Q 042537 313 IIILLGSCQMGPHFPKWLQTQNQIEVLDISDAGISDTVPDWFWDLSHTIADFNLSNNHIKGKLPNLSLRFDPFSSSIDIS 392 (789)
Q Consensus 313 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~ 392 (789)
...+|..+..+.+|..+|+|.|.+. ..|+.+... ++|+.|++++|+++
T Consensus 211 ----------l~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l-~~LrrLNLS~N~it-------------------- 258 (1255)
T KOG0444|consen 211 ----------LDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKL-RNLRRLNLSGNKIT-------------------- 258 (1255)
T ss_pred ----------hhcCCCchhhhhhhhhccccccCCC-cchHHHhhh-hhhheeccCcCcee--------------------
Confidence 1255666667777777777777665 444444432 24444444444443
Q ss_pred CCcccccCCCCCCCCcEEEcCCCcCccccchhcccCCCCCCEEEcCCCccccCCCcccccCCCCcEEEcCCCcCcc-cCC
Q 042537 393 SNYFEGLIPPLPSNASVLNLSRNKFSESISFLCSINGHKLEFLDLSNNILSGRLPDCWMQFDRLAVLSLANNFFSG-KIP 471 (789)
Q Consensus 393 ~n~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~ 471 (789)
........+ .+|++|++|.|+++ .+|.++++++.|+.|.+.+|+++- -+|
T Consensus 259 --------------------------eL~~~~~~W--~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiP 309 (1255)
T KOG0444|consen 259 --------------------------ELNMTEGEW--ENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIP 309 (1255)
T ss_pred --------------------------eeeccHHHH--hhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCc
Confidence 111111111 45666667777666 666677777777777777776542 356
Q ss_pred ccccccCcccEEEccCCeeeeeCCcCccCCCCCcEEeCCCCcccccCchhhhhcCCCCcEEEcCCCccc
Q 042537 472 KSMGFLHSIQTLSLYNNSLIGELPSFFKSCSQLILMDLGKNGLSGEIPTWIGEGLPKLVVLSLKSNKFH 540 (789)
Q Consensus 472 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~ 540 (789)
..++.+..|+.+..++|.+. ..|+.++.|..|+.|.|+.|++. .+|+.+. -++.|+.||+..|.-.
T Consensus 310 SGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIH-lL~~l~vLDlreNpnL 375 (1255)
T KOG0444|consen 310 SGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIH-LLPDLKVLDLRENPNL 375 (1255)
T ss_pred cchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhh-hcCCcceeeccCCcCc
Confidence 66666667777777776665 66667777777777777777766 6676665 4667777777766543
No 10
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.97 E-value=2e-32 Score=279.97 Aligned_cols=363 Identities=26% Similarity=0.374 Sum_probs=223.8
Q ss_pred CCcEEEccCCCCc-ccCchhhhcCCCCcEEECCCCCccEEecCCCcCcccchhhhhCCCCCCEEEccCCCCCCccChhhh
Q 042537 204 KLVVLDLDSNLLQ-GSLLEPFDRMVSLRTLYLGFNELEELFLGKNRLNGTINQWLSRMYKLDALSLSGNSLTGVVTESVF 282 (789)
Q Consensus 204 ~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~L~~n~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~ 282 (789)
-.+-.|+++|.++ +..|....++++++.|.|...+|. .+|+.++.+.+|++|.+++|++. .+.. .+
T Consensus 8 FVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-----------~vPeEL~~lqkLEHLs~~HN~L~-~vhG-EL 74 (1255)
T KOG0444|consen 8 FVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-----------QVPEELSRLQKLEHLSMAHNQLI-SVHG-EL 74 (1255)
T ss_pred eeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-----------hChHHHHHHhhhhhhhhhhhhhH-hhhh-hh
Confidence 4566777777776 456677777777777777644443 24666777777777777777766 2222 25
Q ss_pred hcCCCCcEEEccCCcccccccCCCCCcccceeEeccCccCCCCCchhccCCCCccEEEccCCcCCCCcchhHhhhccCCC
Q 042537 283 SELSNLKALHLDDNSFTLKFSHDWIPPFQLIIILLGSCQMGPHFPKWLQTQNQIEVLDISDAGISDTVPDWFWDLSHTIA 362 (789)
Q Consensus 283 ~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~n~i~~~~~~~~~~~~~~L~ 362 (789)
..++.|+.+++..|.+... -+|..+..+..|+.||+|+|++.+
T Consensus 75 s~Lp~LRsv~~R~N~LKns-----------------------GiP~diF~l~dLt~lDLShNqL~E-------------- 117 (1255)
T KOG0444|consen 75 SDLPRLRSVIVRDNNLKNS-----------------------GIPTDIFRLKDLTILDLSHNQLRE-------------- 117 (1255)
T ss_pred ccchhhHHHhhhccccccC-----------------------CCCchhcccccceeeecchhhhhh--------------
Confidence 5666666666666655421 344445555555555555555542
Q ss_pred eeeeccccccccCCCCCCCCCCCCCEEEccCCcccccCCCCCCCCcEEEcCCCcCccccchhcccCCCCCCEEEcCCCcc
Q 042537 363 DFNLSNNHIKGKLPNLSLRFDPFSSSIDISSNYFEGLIPPLPSNASVLNLSRNKFSESISFLCSINGHKLEFLDLSNNIL 442 (789)
Q Consensus 363 ~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l 442 (789)
.|. .+.. ..++..|++++|+|..++...+. .++.|-.||||+|++
T Consensus 118 ------------vP~-~LE~---------------------AKn~iVLNLS~N~IetIPn~lfi-nLtDLLfLDLS~NrL 162 (1255)
T KOG0444|consen 118 ------------VPT-NLEY---------------------AKNSIVLNLSYNNIETIPNSLFI-NLTDLLFLDLSNNRL 162 (1255)
T ss_pred ------------cch-hhhh---------------------hcCcEEEEcccCccccCCchHHH-hhHhHhhhccccchh
Confidence 121 1111 23444555666665554443332 226677778888887
Q ss_pred ccCCCcccccCCCCcEEEcCCCcCcccCCccccccCcccEEEccCCeee-eeCCcCccCCCCCcEEeCCCCcccccCchh
Q 042537 443 SGRLPDCWMQFDRLAVLSLANNFFSGKIPKSMGFLHSIQTLSLYNNSLI-GELPSFFKSCSQLILMDLGKNGLSGEIPTW 521 (789)
Q Consensus 443 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~ 521 (789)
. .+|.....+..|++|+|++|.+.-..-..+..+++|+.|.+++.+=+ ..+|..+..+.+|..+|+|.|.+. .+|+.
T Consensus 163 e-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPec 240 (1255)
T KOG0444|consen 163 E-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPEC 240 (1255)
T ss_pred h-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHH
Confidence 6 56666777778888888888765433334455667777777765432 346777777888888888888887 77877
Q ss_pred hhhcCCCCcEEEcCCCcccccCCCCccCCCcCceEeccCCcccccCCccccccccCcccCCCccccccCccccccccccc
Q 042537 522 IGEGLPKLVVLSLKSNKFHGNIPFQVCQLSYIQILDLSLNNISGIIPKCLNNFTGMAQKSSSNLAITSNYTFERQGIEFL 601 (789)
Q Consensus 522 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~ 601 (789)
++ .+++|+.|+|++|+|+ .+......+.+|++|++|.|+++ ..|.++..++.|
T Consensus 241 ly-~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL------------------------ 293 (1255)
T KOG0444|consen 241 LY-KLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKL------------------------ 293 (1255)
T ss_pred Hh-hhhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhc-cchHHHhhhHHH------------------------
Confidence 77 5788888888888887 44445566777888888888887 677777776666
Q ss_pred ccccceeEEEeeccccccccccCceeEEEcccCcccc-ccchhhhccccCcEEEccCCcceeecCcccccCCCCCEEeCC
Q 042537 602 ESYVDNVVLTWKGSQHEYRSTLGLVKILDFSMNKLSG-TIPEEIMDLVGLVALNLSRNNLTGQITPKIDQLKSLDFLDLS 680 (789)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls 680 (789)
+.|++.+|+++- -+|..++.+.+|+++..++|++. ..|+.+..+..|+.|.|+
T Consensus 294 -------------------------~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~ 347 (1255)
T KOG0444|consen 294 -------------------------TKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLD 347 (1255)
T ss_pred -------------------------HHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccc
Confidence 444455555432 35555555555555555555554 555555555555555555
Q ss_pred CCcccccCchhhhcCCCCCeEeccCCc
Q 042537 681 QNQFVGGIPSSLCQLSRLSVMNLSYNN 707 (789)
Q Consensus 681 ~N~l~~~~p~~l~~l~~L~~L~ls~N~ 707 (789)
+|++. .+|+++.-|+.|+.||+..|+
T Consensus 348 ~NrLi-TLPeaIHlL~~l~vLDlreNp 373 (1255)
T KOG0444|consen 348 HNRLI-TLPEAIHLLPDLKVLDLRENP 373 (1255)
T ss_pred cccee-echhhhhhcCCcceeeccCCc
Confidence 55555 445555555555555555554
No 11
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.92 E-value=1.9e-27 Score=231.90 Aligned_cols=428 Identities=21% Similarity=0.201 Sum_probs=255.9
Q ss_pred CCCCeEEccCCCCCCCchhHHHhhcCCCcEEEccCCCCcccCchhhhcCCCCcEEECCCCCccEEecCCCcCcccchhhh
Q 042537 178 SSLGALYLFENSLSSSIYPWLFNISSKLVVLDLDSNLLQGSLLEPFDRMVSLRTLYLGFNELEELFLGKNRLNGTINQWL 257 (789)
Q Consensus 178 ~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~L~~L~L~~n~l~~~~~~~l 257 (789)
+.-..++|..|+|+ .+|+..|+-.++|+.|||++|.|+.+.|++|.++++|..|-+.+ +|+|+......|
T Consensus 67 ~~tveirLdqN~I~-~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg---------~NkI~~l~k~~F 136 (498)
T KOG4237|consen 67 PETVEIRLDQNQIS-SIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYG---------NNKITDLPKGAF 136 (498)
T ss_pred CcceEEEeccCCcc-cCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhc---------CCchhhhhhhHh
Confidence 45666777777776 66666666666788888888888877788888777776665542 355555566677
Q ss_pred hCCCCCCEEEccCCCCCCccChhhhhcCCCCcEEEccCCcccccccCCCCCcccceeEeccCccCCCCCchhccCCCCcc
Q 042537 258 SRMYKLDALSLSGNSLTGVVTESVFSELSNLKALHLDDNSFTLKFSHDWIPPFQLIIILLGSCQMGPHFPKWLQTQNQIE 337 (789)
Q Consensus 258 ~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~ 337 (789)
+++.+|+.|.+.-|++. .++.+.|..++++..|.+.+|.+.......|.++..++.+.+..|.+.. .-+++.+.
T Consensus 137 ~gL~slqrLllNan~i~-Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~ic-----dCnL~wla 210 (498)
T KOG4237|consen 137 GGLSSLQRLLLNANHIN-CIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFIC-----DCNLPWLA 210 (498)
T ss_pred hhHHHHHHHhcChhhhc-chhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCcccc-----ccccchhh
Confidence 77777777777777776 5666677777777777777777776666666666666666665554210 00111111
Q ss_pred EEEccCCcCCCCcchhHhhhccCCCeeeeccccccccCCCCCCCCCCCCCEEEccCCcccccCCCCCCCCcEEEcCCCcC
Q 042537 338 VLDISDAGISDTVPDWFWDLSHTIADFNLSNNHIKGKLPNLSLRFDPFSSSIDISSNYFEGLIPPLPSNASVLNLSRNKF 417 (789)
Q Consensus 338 ~L~ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~i 417 (789)
... ..+.+ .+.. .....-..+.+.++. .++...+... ++ ++..--.+.+..
T Consensus 211 ~~~-a~~~i------etsg-arc~~p~rl~~~Ri~-q~~a~kf~c~--~e------------------sl~s~~~~~d~~ 261 (498)
T KOG4237|consen 211 DDL-AMNPI------ETSG-ARCVSPYRLYYKRIN-QEDARKFLCS--LE------------------SLPSRLSSEDFP 261 (498)
T ss_pred hHH-hhchh------hccc-ceecchHHHHHHHhc-ccchhhhhhh--HH------------------hHHHhhccccCc
Confidence 100 00000 0000 011112222333332 1111011110 00 000001122233
Q ss_pred ccccchhcccCCCCCCEEEcCCCccccCCCcccccCCCCcEEEcCCCcCcccCCccccccCcccEEEccCCeeeeeCCcC
Q 042537 418 SESISFLCSINGHKLEFLDLSNNILSGRLPDCWMQFDRLAVLSLANNFFSGKIPKSMGFLHSIQTLSLYNNSLIGELPSF 497 (789)
Q Consensus 418 ~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 497 (789)
.+.-|..++..+++|+.|++++|+|+++-+.+|.+...+++|.|..|++.......|.++..|++|+|++|+|+...|..
T Consensus 262 d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~a 341 (498)
T KOG4237|consen 262 DSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGA 341 (498)
T ss_pred CCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEeccc
Confidence 34455666666789999999999999999999999999999999999999888888999999999999999999999999
Q ss_pred ccCCCCCcEEeCCCCccccc-CchhhhhcCCCCcEEEcCCCcccccCCCCccCCCcCceEeccCCccccc---CCccccc
Q 042537 498 FKSCSQLILMDLGKNGLSGE-IPTWIGEGLPKLVVLSLKSNKFHGNIPFQVCQLSYIQILDLSLNNISGI---IPKCLNN 573 (789)
Q Consensus 498 ~~~l~~L~~L~ls~n~l~~~-~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~---~p~~~~~ 573 (789)
|..+.+|.+|++-.|.+... --.|+.+.+ ..+...|..| -+.-..++.+.++++.+... .|+..+-
T Consensus 342 F~~~~~l~~l~l~~Np~~CnC~l~wl~~Wl--------r~~~~~~~~~--Cq~p~~~~~~~~~dv~~~~~~c~~~ee~~~ 411 (498)
T KOG4237|consen 342 FQTLFSLSTLNLLSNPFNCNCRLAWLGEWL--------RKKSVVGNPR--CQSPGFVRQIPISDVAFGDFRCGGPEELGC 411 (498)
T ss_pred ccccceeeeeehccCcccCccchHHHHHHH--------hhCCCCCCCC--CCCCchhccccchhccccccccCCccccCC
Confidence 99999999999998876521 112333211 2222222211 12233455666666554422 1111110
Q ss_pred cccCcccCCCccccccCcccccccccccccccceeEEEeeccccccccccCceeEEEcccCccccccchhhhccccCcEE
Q 042537 574 FTGMAQKSSSNLAITSNYTFERQGIEFLESYVDNVVLTWKGSQHEYRSTLGLVKILDFSMNKLSGTIPEEIMDLVGLVAL 653 (789)
Q Consensus 574 l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 653 (789)
.++- +.+......=++...|+..++ .+|..+. ..-.+|
T Consensus 412 ~~s~---------------------------------------~cP~~c~c~~tVvRcSnk~lk-~lp~~iP--~d~tel 449 (498)
T KOG4237|consen 412 LTSS---------------------------------------PCPPPCTCLDTVVRCSNKLLK-LLPRGIP--VDVTEL 449 (498)
T ss_pred CCCC---------------------------------------CCCCCcchhhhhHhhcccchh-hcCCCCC--chhHHH
Confidence 0000 000000000034445555554 5554333 245677
Q ss_pred EccCCcceeecCcccccCCCCCEEeCCCCcccccCchhhhcCCCCCeEeccCC
Q 042537 654 NLSRNNLTGQITPKIDQLKSLDFLDLSQNQFVGGIPSSLCQLSRLSVMNLSYN 706 (789)
Q Consensus 654 ~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N 706 (789)
++.+|.++ .+|.. .+.+| .+|+++|+++...-..|.++++|.+|-++||
T Consensus 450 yl~gn~~~-~vp~~--~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tlilsyn 498 (498)
T KOG4237|consen 450 YLDGNAIT-SVPDE--LLRSL-LLDLSNNRISSLSNYTFSNMTQLSTLILSYN 498 (498)
T ss_pred hcccchhc-ccCHH--HHhhh-hcccccCceehhhcccccchhhhheeEEecC
Confidence 88888887 56665 56677 7888888887666677888888888888876
No 12
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.89 E-value=1.3e-25 Score=219.06 Aligned_cols=53 Identities=28% Similarity=0.349 Sum_probs=35.4
Q ss_pred CcEEEcCCCcCcccCCccccccCcccEEEccCCeeeeeCCcCccCCCCCcEEeCCCC
Q 042537 456 LAVLSLANNFFSGKIPKSMGFLHSIQTLSLYNNSLIGELPSFFKSCSQLILMDLGKN 512 (789)
Q Consensus 456 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n 512 (789)
-.++++.+|.++ .+|.. .+.+| .+++++|++.......|.+++.|.+|-+++|
T Consensus 446 ~telyl~gn~~~-~vp~~--~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tlilsyn 498 (498)
T KOG4237|consen 446 VTELYLDGNAIT-SVPDE--LLRSL-LLDLSNNRISSLSNYTFSNMTQLSTLILSYN 498 (498)
T ss_pred hHHHhcccchhc-ccCHH--HHhhh-hcccccCceehhhcccccchhhhheeEEecC
Confidence 456677777777 44544 45566 7777777777655566777777777777664
No 13
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.88 E-value=1.8e-21 Score=235.18 Aligned_cols=307 Identities=20% Similarity=0.239 Sum_probs=183.2
Q ss_pred CCcEEEccCCcccccccCCCCCcccceeEeccCccCCCCCchhccCCCCccEEEccCCcCCCCcchhHhhhccCCCeeee
Q 042537 287 NLKALHLDDNSFTLKFSHDWIPPFQLIIILLGSCQMGPHFPKWLQTQNQIEVLDISDAGISDTVPDWFWDLSHTIADFNL 366 (789)
Q Consensus 287 ~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~l 366 (789)
+|+.|++.++++.... ..+ ...+|+.|++.+|.+. .++..+..+++|+.++++++.....+|. + ...++|+.|++
T Consensus 590 ~Lr~L~~~~~~l~~lP-~~f-~~~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-l-s~l~~Le~L~L 664 (1153)
T PLN03210 590 KLRLLRWDKYPLRCMP-SNF-RPENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIPD-L-SMATNLETLKL 664 (1153)
T ss_pred ccEEEEecCCCCCCCC-CcC-CccCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCCc-c-ccCCcccEEEe
Confidence 3555555555443221 111 2334444444444433 3344445556666666655543333332 1 11234555555
Q ss_pred ccccccccCCCCCCCCCCCCCEEEccCCcccccCCCCCCCCcEEEcCCCcCccccchhcccCCCCCCEEEcCCCccccCC
Q 042537 367 SNNHIKGKLPNLSLRFDPFSSSIDISSNYFEGLIPPLPSNASVLNLSRNKFSESISFLCSINGHKLEFLDLSNNILSGRL 446 (789)
Q Consensus 367 ~~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~ 446 (789)
++|.....+|. .+..+++|+.|++++|...+.+| ... .+++|+.|++++|......
T Consensus 665 ~~c~~L~~lp~-si~~L~~L~~L~L~~c~~L~~Lp---------------------~~i--~l~sL~~L~Lsgc~~L~~~ 720 (1153)
T PLN03210 665 SDCSSLVELPS-SIQYLNKLEDLDMSRCENLEILP---------------------TGI--NLKSLYRLNLSGCSRLKSF 720 (1153)
T ss_pred cCCCCccccch-hhhccCCCCEEeCCCCCCcCccC---------------------CcC--CCCCCCEEeCCCCCCcccc
Confidence 55443334444 34444455555555543222222 111 1267888888887655455
Q ss_pred CcccccCCCCcEEEcCCCcCcccCCccccccCcccEEEccCCeee-------eeCCcCccCCCCCcEEeCCCCcccccCc
Q 042537 447 PDCWMQFDRLAVLSLANNFFSGKIPKSMGFLHSIQTLSLYNNSLI-------GELPSFFKSCSQLILMDLGKNGLSGEIP 519 (789)
Q Consensus 447 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-------~~~~~~~~~l~~L~~L~ls~n~l~~~~p 519 (789)
|.. ..+|+.|++++|.+. .+|..+ .+++|++|++.++... ...+..+..+++|+.|++++|...+.+|
T Consensus 721 p~~---~~nL~~L~L~~n~i~-~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP 795 (1153)
T PLN03210 721 PDI---STNISWLDLDETAIE-EFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELP 795 (1153)
T ss_pred ccc---cCCcCeeecCCCccc-cccccc-cccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccC
Confidence 532 357888888888887 456554 4677888888764422 1112223345678888888887666788
Q ss_pred hhhhhcCCCCcEEEcCCCcccccCCCCccCCCcCceEeccCCcccccCCccccccccCcccCCCccccccCccccccccc
Q 042537 520 TWIGEGLPKLVVLSLKSNKFHGNIPFQVCQLSYIQILDLSLNNISGIIPKCLNNFTGMAQKSSSNLAITSNYTFERQGIE 599 (789)
Q Consensus 520 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~ 599 (789)
..+. ++++|+.|++++|...+.+|... .+++|+.|++++|.....+|..
T Consensus 796 ~si~-~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~----------------------------- 844 (1153)
T PLN03210 796 SSIQ-NLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI----------------------------- 844 (1153)
T ss_pred hhhh-CCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc-----------------------------
Confidence 7766 68888888888876555666655 6788888888877543333221
Q ss_pred ccccccceeEEEeeccccccccccCceeEEEcccCccccccchhhhccccCcEEEccCC-cceeecCcccccCCCCCEEe
Q 042537 600 FLESYVDNVVLTWKGSQHEYRSTLGLVKILDFSMNKLSGTIPEEIMDLVGLVALNLSRN-NLTGQITPKIDQLKSLDFLD 678 (789)
Q Consensus 600 ~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N-~l~~~~p~~~~~l~~L~~L~ 678 (789)
..+++.|+|++|.++ .+|..+..+++|+.|+|++| +++ .+|..+..+++|+.++
T Consensus 845 -----------------------~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~-~l~~~~~~L~~L~~L~ 899 (1153)
T PLN03210 845 -----------------------STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQ-RVSLNISKLKHLETVD 899 (1153)
T ss_pred -----------------------ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcC-ccCcccccccCCCeee
Confidence 123478888888887 67888888888888888884 454 5777788888888888
Q ss_pred CCCCc
Q 042537 679 LSQNQ 683 (789)
Q Consensus 679 Ls~N~ 683 (789)
+++|.
T Consensus 900 l~~C~ 904 (1153)
T PLN03210 900 FSDCG 904 (1153)
T ss_pred cCCCc
Confidence 88885
No 14
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.87 E-value=5.7e-21 Score=230.94 Aligned_cols=340 Identities=18% Similarity=0.199 Sum_probs=243.7
Q ss_pred CchhccCCCCccEEEccCCcC------CCCcchhHhhhccCCCeeeeccccccccCCCCCCCCCCCCCEEEccCCccccc
Q 042537 326 FPKWLQTQNQIEVLDISDAGI------SDTVPDWFWDLSHTIADFNLSNNHIKGKLPNLSLRFDPFSSSIDISSNYFEGL 399 (789)
Q Consensus 326 ~~~~l~~l~~L~~L~ls~n~i------~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~ 399 (789)
.+.+|..+++|+.|.+..+.. ....|..+...+.+|+.|.+.++.+. .+|. .+ ...+|+.|++.++.+...
T Consensus 550 ~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~-~f-~~~~L~~L~L~~s~l~~L 626 (1153)
T PLN03210 550 HENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPS-NF-RPENLVKLQMQGSKLEKL 626 (1153)
T ss_pred cHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCC-cC-CccCCcEEECcCcccccc
Confidence 345677888888888866532 23456666666677888888888876 6665 33 456788889888887654
Q ss_pred CCC--CCCCCcEEEcCCCcCccccchhcccCCCCCCEEEcCCCccccCCCcccccCCCCcEEEcCCCcCcccCCcccccc
Q 042537 400 IPP--LPSNASVLNLSRNKFSESISFLCSINGHKLEFLDLSNNILSGRLPDCWMQFDRLAVLSLANNFFSGKIPKSMGFL 477 (789)
Q Consensus 400 ~~~--~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 477 (789)
... .+++|+.++++++.....++.... .++|+.|++++|.....+|..+.++++|+.|++++|...+.+|..+ .+
T Consensus 627 ~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~--l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l 703 (1153)
T PLN03210 627 WDGVHSLTGLRNIDLRGSKNLKEIPDLSM--ATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NL 703 (1153)
T ss_pred ccccccCCCCCEEECCCCCCcCcCCcccc--CCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CC
Confidence 322 367888899988765444554333 2789999999987766888888999999999999876555667655 68
Q ss_pred CcccEEEccCCeeeeeCCcCccCCCCCcEEeCCCCcccccCchhhhhcCCCCcEEEcCCCccc-------ccCCCCccCC
Q 042537 478 HSIQTLSLYNNSLIGELPSFFKSCSQLILMDLGKNGLSGEIPTWIGEGLPKLVVLSLKSNKFH-------GNIPFQVCQL 550 (789)
Q Consensus 478 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~-------~~~~~~~~~l 550 (789)
++|+.|++++|.....+|.. ..+|+.|++++|.+. .+|..+ .+++|+.|++.++... ...+......
T Consensus 704 ~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~~--~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~ 777 (1153)
T PLN03210 704 KSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFPSNL--RLENLDELILCEMKSEKLWERVQPLTPLMTMLS 777 (1153)
T ss_pred CCCCEEeCCCCCCccccccc---cCCcCeeecCCCccc-cccccc--cccccccccccccchhhccccccccchhhhhcc
Confidence 88999999998766566543 457889999999987 788765 4778888888764322 1112222335
Q ss_pred CcCceEeccCCcccccCCccccccccCcccCCCccccccCcccccccccccccccceeEEEeeccccccccccCceeEEE
Q 042537 551 SYIQILDLSLNNISGIIPKCLNNFTGMAQKSSSNLAITSNYTFERQGIEFLESYVDNVVLTWKGSQHEYRSTLGLVKILD 630 (789)
Q Consensus 551 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~ 630 (789)
++|+.|++++|+..+.+|..++++++|+.+...+...... + +. ...+++|+.|+
T Consensus 778 ~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~--L-----------------------P~-~~~L~sL~~L~ 831 (1153)
T PLN03210 778 PSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLET--L-----------------------PT-GINLESLESLD 831 (1153)
T ss_pred ccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCe--e-----------------------CC-CCCccccCEEE
Confidence 6788888888887777888888888776665433211100 0 00 01356789999
Q ss_pred cccCccccccchhhhccccCcEEEccCCcceeecCcccccCCCCCEEeCCCCcccccCchhhhcCCCCCeEeccCCc
Q 042537 631 FSMNKLSGTIPEEIMDLVGLVALNLSRNNLTGQITPKIDQLKSLDFLDLSQNQFVGGIPSSLCQLSRLSVMNLSYNN 707 (789)
Q Consensus 631 Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~ 707 (789)
+++|.....+|.. .++|+.|+|++|.++ .+|.++..+++|+.|+|++|+-...+|..+..+++|+.+++++|.
T Consensus 832 Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 832 LSGCSRLRTFPDI---STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred CCCCCcccccccc---ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence 9998665566643 367999999999998 688899999999999999855444677788889999999999885
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.87 E-value=1.7e-21 Score=217.61 Aligned_cols=79 Identities=33% Similarity=0.310 Sum_probs=46.7
Q ss_pred eEEEcccCccccccchhhhccccCcEEEccCCcceeecCcccccCCCCCEEeCCCCcccccCchhhhcCCCCCeEeccCC
Q 042537 627 KILDFSMNKLSGTIPEEIMDLVGLVALNLSRNNLTGQITPKIDQLKSLDFLDLSQNQFVGGIPSSLCQLSRLSVMNLSYN 706 (789)
Q Consensus 627 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N 706 (789)
+.|++++|+++ .+|.. .++|+.|++++|+++ .+|... .+|+.|++++|+|+ .+|..+..++.|+.|++++|
T Consensus 385 ~~LdLs~N~Lt-~LP~l---~s~L~~LdLS~N~Ls-sIP~l~---~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N 455 (788)
T PRK15387 385 KELIVSGNRLT-SLPVL---PSELKELMVSGNRLT-SLPMLP---SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGN 455 (788)
T ss_pred ceEEecCCccc-CCCCc---ccCCCEEEccCCcCC-CCCcch---hhhhhhhhccCccc-ccChHHhhccCCCeEECCCC
Confidence 56666666666 34432 245666666666666 344322 34566666666666 45666666666666666666
Q ss_pred cccccCCC
Q 042537 707 NLSGKIPL 714 (789)
Q Consensus 707 ~l~~~~p~ 714 (789)
+|+|.+|.
T Consensus 456 ~Ls~~~~~ 463 (788)
T PRK15387 456 PLSERTLQ 463 (788)
T ss_pred CCCchHHH
Confidence 66665553
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.87 E-value=2e-21 Score=217.02 Aligned_cols=267 Identities=26% Similarity=0.359 Sum_probs=199.6
Q ss_pred CccEEEccCCcCCCCcchhHhhhccCCCeeeeccccccccCCCCCCCCCCCCCEEEccCCcccccCCCCCCCCcEEEcCC
Q 042537 335 QIEVLDISDAGISDTVPDWFWDLSHTIADFNLSNNHIKGKLPNLSLRFDPFSSSIDISSNYFEGLIPPLPSNASVLNLSR 414 (789)
Q Consensus 335 ~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~ 414 (789)
.-..|+++++.++. +|..+. +.++.|++.+|+++ .+|. ..++|++|++++|+++.. |..+++|+.|++++
T Consensus 202 ~~~~LdLs~~~Lts-LP~~l~---~~L~~L~L~~N~Lt-~LP~----lp~~Lk~LdLs~N~LtsL-P~lp~sL~~L~Ls~ 271 (788)
T PRK15387 202 GNAVLNVGESGLTT-LPDCLP---AHITTLVIPDNNLT-SLPA----LPPELRTLEVSGNQLTSL-PVLPPGLLELSIFS 271 (788)
T ss_pred CCcEEEcCCCCCCc-CCcchh---cCCCEEEccCCcCC-CCCC----CCCCCcEEEecCCccCcc-cCcccccceeeccC
Confidence 34567777777763 444432 36777777777777 4554 246688888888888754 55677888899988
Q ss_pred CcCccccchhcccCCCCCCEEEcCCCccccCCCcccccCCCCcEEEcCCCcCcccCCccccccCcccEEEccCCeeeeeC
Q 042537 415 NKFSESISFLCSINGHKLEFLDLSNNILSGRLPDCWMQFDRLAVLSLANNFFSGKIPKSMGFLHSIQTLSLYNNSLIGEL 494 (789)
Q Consensus 415 n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 494 (789)
|.+...+.. . .+|+.|++++|+++ .+|. ..++|+.|++++|++++ +|.. ..+|+.|++++|.+++ +
T Consensus 272 N~L~~Lp~l-p----~~L~~L~Ls~N~Lt-~LP~---~p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~N~L~~-L 337 (788)
T PRK15387 272 NPLTHLPAL-P----SGLCKLWIFGNQLT-SLPV---LPPGLQELSVSDNQLAS-LPAL---PSELCKLWAYNNQLTS-L 337 (788)
T ss_pred Cchhhhhhc-h----hhcCEEECcCCccc-cccc---cccccceeECCCCcccc-CCCC---cccccccccccCcccc-c
Confidence 888764431 1 57889999999988 4453 24679999999999985 4432 3468889999999874 4
Q ss_pred CcCccCCCCCcEEeCCCCcccccCchhhhhcCCCCcEEEcCCCcccccCCCCccCCCcCceEeccCCcccccCCcccccc
Q 042537 495 PSFFKSCSQLILMDLGKNGLSGEIPTWIGEGLPKLVVLSLKSNKFHGNIPFQVCQLSYIQILDLSLNNISGIIPKCLNNF 574 (789)
Q Consensus 495 ~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l 574 (789)
|.. ..+|+.|++++|+++ .+|.. .++|+.|++++|++.+ +|.. ..+|+.|++++|++++ +|...
T Consensus 338 P~l---p~~Lq~LdLS~N~Ls-~LP~l----p~~L~~L~Ls~N~L~~-LP~l---~~~L~~LdLs~N~Lt~-LP~l~--- 401 (788)
T PRK15387 338 PTL---PSGLQELSVSDNQLA-SLPTL----PSELYKLWAYNNRLTS-LPAL---PSGLKELIVSGNRLTS-LPVLP--- 401 (788)
T ss_pred ccc---ccccceEecCCCccC-CCCCC----Ccccceehhhcccccc-Cccc---ccccceEEecCCcccC-CCCcc---
Confidence 432 257999999999998 67752 3578899999999984 5543 3578999999999884 33221
Q ss_pred ccCcccCCCccccccCcccccccccccccccceeEEEeeccccccccccCceeEEEcccCccccccchhhhccccCcEEE
Q 042537 575 TGMAQKSSSNLAITSNYTFERQGIEFLESYVDNVVLTWKGSQHEYRSTLGLVKILDFSMNKLSGTIPEEIMDLVGLVALN 654 (789)
Q Consensus 575 ~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 654 (789)
+.|+.|++++|+++ .+|... .+|+.|+
T Consensus 402 -------------------------------------------------s~L~~LdLS~N~Ls-sIP~l~---~~L~~L~ 428 (788)
T PRK15387 402 -------------------------------------------------SELKELMVSGNRLT-SLPMLP---SGLLSLS 428 (788)
T ss_pred -------------------------------------------------cCCCEEEccCCcCC-CCCcch---hhhhhhh
Confidence 12488999999998 467543 4688899
Q ss_pred ccCCcceeecCcccccCCCCCEEeCCCCcccccCchhhhcC
Q 042537 655 LSRNNLTGQITPKIDQLKSLDFLDLSQNQFVGGIPSSLCQL 695 (789)
Q Consensus 655 Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l 695 (789)
+++|+|+ .+|..+.++++|+.|+|++|++++..|..+..+
T Consensus 429 Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L~~l 468 (788)
T PRK15387 429 VYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREI 468 (788)
T ss_pred hccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHHHHH
Confidence 9999998 789999999999999999999999988887544
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.82 E-value=6.6e-20 Score=206.52 Aligned_cols=244 Identities=21% Similarity=0.387 Sum_probs=143.5
Q ss_pred CEEEccCCcccccCCCCCCCCcEEEcCCCcCccccchhcccCCCCCCEEEcCCCccccCCCcccccCCCCcEEEcCCCcC
Q 042537 387 SSIDISSNYFEGLIPPLPSNASVLNLSRNKFSESISFLCSINGHKLEFLDLSNNILSGRLPDCWMQFDRLAVLSLANNFF 466 (789)
Q Consensus 387 ~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l 466 (789)
..|+++++.++..+...+..++.|++++|+++..+...+ .+|+.|++++|+++ .+|..+. .+|+.|++++|++
T Consensus 181 ~~L~L~~~~LtsLP~~Ip~~L~~L~Ls~N~LtsLP~~l~----~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L 253 (754)
T PRK15370 181 TELRLKILGLTTIPACIPEQITTLILDNNELKSLPENLQ----GNIKTLYANSNQLT-SIPATLP--DTIQEMELSINRI 253 (754)
T ss_pred eEEEeCCCCcCcCCcccccCCcEEEecCCCCCcCChhhc----cCCCEEECCCCccc-cCChhhh--ccccEEECcCCcc
Confidence 445555555554433344556666666666665443322 45677777777666 3444332 3566777777776
Q ss_pred cccCCccccccCcccEEEccCCeeeeeCCcCccCCCCCcEEeCCCCcccccCchhhhhcCCCCcEEEcCCCcccccCCCC
Q 042537 467 SGKIPKSMGFLHSIQTLSLYNNSLIGELPSFFKSCSQLILMDLGKNGLSGEIPTWIGEGLPKLVVLSLKSNKFHGNIPFQ 546 (789)
Q Consensus 467 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~ 546 (789)
. .+|..+. .+|+.|++++|++.. +|..+. ++|+.|++++|+++ .+|..+. ++|+.|++++|+++. +|..
T Consensus 254 ~-~LP~~l~--s~L~~L~Ls~N~L~~-LP~~l~--~sL~~L~Ls~N~Lt-~LP~~lp---~sL~~L~Ls~N~Lt~-LP~~ 322 (754)
T PRK15370 254 T-ELPERLP--SALQSLDLFHNKISC-LPENLP--EELRYLSVYDNSIR-TLPAHLP---SGITHLNVQSNSLTA-LPET 322 (754)
T ss_pred C-cCChhHh--CCCCEEECcCCccCc-cccccC--CCCcEEECCCCccc-cCcccch---hhHHHHHhcCCcccc-CCcc
Confidence 6 4454443 457777777777663 444332 46777777777776 5665432 356677777777763 3433
Q ss_pred ccCCCcCceEeccCCcccccCCccccccccCcccCCCccccccCcccccccccccccccceeEEEeeccccccccccCce
Q 042537 547 VCQLSYIQILDLSLNNISGIIPKCLNNFTGMAQKSSSNLAITSNYTFERQGIEFLESYVDNVVLTWKGSQHEYRSTLGLV 626 (789)
Q Consensus 547 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L 626 (789)
+ .++|+.|++++|.+++ +|..+. +.|
T Consensus 323 l--~~sL~~L~Ls~N~Lt~-LP~~l~---------------------------------------------------~sL 348 (754)
T PRK15370 323 L--PPGLKTLEAGENALTS-LPASLP---------------------------------------------------PEL 348 (754)
T ss_pred c--cccceeccccCCcccc-CChhhc---------------------------------------------------Ccc
Confidence 3 2567777777776663 332211 224
Q ss_pred eEEEcccCccccccchhhhccccCcEEEccCCcceeecCcccccCCCCCEEeCCCCcccccCchhh----hcCCCCCeEe
Q 042537 627 KILDFSMNKLSGTIPEEIMDLVGLVALNLSRNNLTGQITPKIDQLKSLDFLDLSQNQFVGGIPSSL----CQLSRLSVMN 702 (789)
Q Consensus 627 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l----~~l~~L~~L~ 702 (789)
+.|++++|+++ .+|..+. +.|+.|+|++|+++ .+|+.+. .+|+.|++++|+++ .+|..+ ..++.+..++
T Consensus 349 ~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt-~LP~~l~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~ 421 (754)
T PRK15370 349 QVLDVSKNQIT-VLPETLP--PTITTLDVSRNALT-NLPENLP--AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRII 421 (754)
T ss_pred cEEECCCCCCC-cCChhhc--CCcCEEECCCCcCC-CCCHhHH--HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEE
Confidence 67777777776 4565443 56777777777777 4555544 35777777777776 344433 3346677777
Q ss_pred ccCCccc
Q 042537 703 LSYNNLS 709 (789)
Q Consensus 703 ls~N~l~ 709 (789)
+.+|+++
T Consensus 422 L~~Npls 428 (754)
T PRK15370 422 VEYNPFS 428 (754)
T ss_pred eeCCCcc
Confidence 7777775
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.80 E-value=1.6e-19 Score=203.39 Aligned_cols=224 Identities=25% Similarity=0.393 Sum_probs=136.4
Q ss_pred CCEEEccCCcccccCCCCCCCCcEEEcCCCcCccccchhcccCCCCCCEEEcCCCccccCCCcccccCCCCcEEEcCCCc
Q 042537 386 SSSIDISSNYFEGLIPPLPSNASVLNLSRNKFSESISFLCSINGHKLEFLDLSNNILSGRLPDCWMQFDRLAVLSLANNF 465 (789)
Q Consensus 386 L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~ 465 (789)
++.|++++|.++..+...+.+|+.|++++|++++.+.... .+|+.|++++|.+. .+|..+. .+|+.|++++|+
T Consensus 201 L~~L~Ls~N~LtsLP~~l~~nL~~L~Ls~N~LtsLP~~l~----~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~ 273 (754)
T PRK15370 201 ITTLILDNNELKSLPENLQGNIKTLYANSNQLTSIPATLP----DTIQEMELSINRIT-ELPERLP--SALQSLDLFHNK 273 (754)
T ss_pred CcEEEecCCCCCcCChhhccCCCEEECCCCccccCChhhh----ccccEEECcCCccC-cCChhHh--CCCCEEECcCCc
Confidence 4444444444443333334455566666665554332221 45677777777766 4454443 367777777777
Q ss_pred CcccCCccccccCcccEEEccCCeeeeeCCcCccCCCCCcEEeCCCCcccccCchhhhhcCCCCcEEEcCCCcccccCCC
Q 042537 466 FSGKIPKSMGFLHSIQTLSLYNNSLIGELPSFFKSCSQLILMDLGKNGLSGEIPTWIGEGLPKLVVLSLKSNKFHGNIPF 545 (789)
Q Consensus 466 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~ 545 (789)
++ .+|..+. ++|+.|++++|++++ +|..+. ++|+.|++++|.++ .+|..+. ++|+.|++++|.+++ +|.
T Consensus 274 L~-~LP~~l~--~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls~N~Lt-~LP~~l~---~sL~~L~Ls~N~Lt~-LP~ 342 (754)
T PRK15370 274 IS-CLPENLP--EELRYLSVYDNSIRT-LPAHLP--SGITHLNVQSNSLT-ALPETLP---PGLKTLEAGENALTS-LPA 342 (754)
T ss_pred cC-ccccccC--CCCcEEECCCCcccc-Ccccch--hhHHHHHhcCCccc-cCCcccc---ccceeccccCCcccc-CCh
Confidence 76 3455443 467777777777764 343332 46777777777777 5665443 577777777777774 454
Q ss_pred CccCCCcCceEeccCCcccccCCccccccccCcccCCCccccccCcccccccccccccccceeEEEeeccccccccccCc
Q 042537 546 QVCQLSYIQILDLSLNNISGIIPKCLNNFTGMAQKSSSNLAITSNYTFERQGIEFLESYVDNVVLTWKGSQHEYRSTLGL 625 (789)
Q Consensus 546 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 625 (789)
.+. ++|+.|++++|+++. +|..+. +.
T Consensus 343 ~l~--~sL~~L~Ls~N~L~~-LP~~lp---------------------------------------------------~~ 368 (754)
T PRK15370 343 SLP--PELQVLDVSKNQITV-LPETLP---------------------------------------------------PT 368 (754)
T ss_pred hhc--CcccEEECCCCCCCc-CChhhc---------------------------------------------------CC
Confidence 443 577888888887763 343221 12
Q ss_pred eeEEEcccCccccccchhhhccccCcEEEccCCcceeecCccc----ccCCCCCEEeCCCCccc
Q 042537 626 VKILDFSMNKLSGTIPEEIMDLVGLVALNLSRNNLTGQITPKI----DQLKSLDFLDLSQNQFV 685 (789)
Q Consensus 626 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~----~~l~~L~~L~Ls~N~l~ 685 (789)
|+.|++++|+++ .+|..+. ..|+.|++++|+++ .+|..+ ..++.+..|++.+|.++
T Consensus 369 L~~LdLs~N~Lt-~LP~~l~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 369 ITTLDVSRNALT-NLPENLP--AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred cCEEECCCCcCC-CCCHhHH--HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 477888888887 4565554 35778888888887 455544 33477788888888876
No 19
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.70 E-value=2.6e-19 Score=155.08 Aligned_cols=182 Identities=26% Similarity=0.439 Sum_probs=132.5
Q ss_pred ccCcccEEEccCCeeeeeCCcCccCCCCCcEEeCCCCcccccCchhhhhcCCCCcEEEcCCCcccccCCCCccCCCcCce
Q 042537 476 FLHSIQTLSLYNNSLIGELPSFFKSCSQLILMDLGKNGLSGEIPTWIGEGLPKLVVLSLKSNKFHGNIPFQVCQLSYIQI 555 (789)
Q Consensus 476 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 555 (789)
.+..++.|.+++|+++ ..|..+..+.+|+.|++++|+|. .+|..+. .+++|+.|+++-|++. ..|..|+.++.|+.
T Consensus 31 ~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~is-sl~klr~lnvgmnrl~-~lprgfgs~p~lev 106 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSIS-SLPKLRILNVGMNRLN-ILPRGFGSFPALEV 106 (264)
T ss_pred chhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhh-hchhhhheecchhhhh-cCccccCCCchhhh
Confidence 4566777778888877 44556777788888888888887 7888776 5888888888888887 77888888888888
Q ss_pred EeccCCcccc-cCCccccccccCcccCCCccccccCcccccccccccccccceeEEEeeccccccccccCceeEEEcccC
Q 042537 556 LDLSLNNISG-IIPKCLNNFTGMAQKSSSNLAITSNYTFERQGIEFLESYVDNVVLTWKGSQHEYRSTLGLVKILDFSMN 634 (789)
Q Consensus 556 L~Ls~N~l~~-~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N 634 (789)
||+++|++.. ..|..|-.++.| +.|+|++|
T Consensus 107 ldltynnl~e~~lpgnff~m~tl-------------------------------------------------ralyl~dn 137 (264)
T KOG0617|consen 107 LDLTYNNLNENSLPGNFFYMTTL-------------------------------------------------RALYLGDN 137 (264)
T ss_pred hhccccccccccCCcchhHHHHH-------------------------------------------------HHHHhcCC
Confidence 8888887764 334444433333 66777788
Q ss_pred ccccccchhhhccccCcEEEccCCcceeecCcccccCCCCCEEeCCCCcccccCchhhhcCC---CCCeEeccCCccccc
Q 042537 635 KLSGTIPEEIMDLVGLVALNLSRNNLTGQITPKIDQLKSLDFLDLSQNQFVGGIPSSLCQLS---RLSVMNLSYNNLSGK 711 (789)
Q Consensus 635 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~---~L~~L~ls~N~l~~~ 711 (789)
.+. .+|..++++++|+.|.+..|.+. ..|..++.++.|++|.+.+|+++ .+|..++.+. +=+.+.+.+|++..+
T Consensus 138 dfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~-vlppel~~l~l~~~k~v~r~E~NPwv~p 214 (264)
T KOG0617|consen 138 DFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT-VLPPELANLDLVGNKQVMRMEENPWVNP 214 (264)
T ss_pred Ccc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceee-ecChhhhhhhhhhhHHHHhhhhCCCCCh
Confidence 777 77777888888888888888877 67788888888888888888887 5555555543 234556677777655
Q ss_pred CC
Q 042537 712 IP 713 (789)
Q Consensus 712 ~p 713 (789)
|.
T Consensus 215 Ia 216 (264)
T KOG0617|consen 215 IA 216 (264)
T ss_pred HH
Confidence 44
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.70 E-value=7.3e-18 Score=177.57 Aligned_cols=143 Identities=22% Similarity=0.277 Sum_probs=69.1
Q ss_pred CCCcEEEccCCCCccc----CchhhhcCCCCcEEECCCCCccEEecCCCcCcccchhhhhCCCCCCEEEccCCCCCCccC
Q 042537 203 SKLVVLDLDSNLLQGS----LLEPFDRMVSLRTLYLGFNELEELFLGKNRLNGTINQWLSRMYKLDALSLSGNSLTGVVT 278 (789)
Q Consensus 203 ~~L~~L~Ls~n~i~~~----~~~~~~~l~~L~~L~L~~n~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~ 278 (789)
++|+.|++++|.+++. .+..+..+++|++|++++|.++.- -...++..+..+++|++|++++|.+.+...
T Consensus 137 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~------~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~ 210 (319)
T cd00116 137 PALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDA------GIRALAEGLKANCNLEVLDLNNNGLTDEGA 210 (319)
T ss_pred CCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchH------HHHHHHHHHHhCCCCCEEeccCCccChHHH
Confidence 3566666666665522 223344555566666653322210 001123334445566666666666652211
Q ss_pred h---hhhhcCCCCcEEEccCCcccccccCCCC-----CcccceeEeccCccCCC----CCchhccCCCCccEEEccCCcC
Q 042537 279 E---SVFSELSNLKALHLDDNSFTLKFSHDWI-----PPFQLIIILLGSCQMGP----HFPKWLQTQNQIEVLDISDAGI 346 (789)
Q Consensus 279 ~---~~~~~l~~L~~L~L~~n~i~~~~~~~~~-----~~~~L~~L~l~~~~~~~----~~~~~l~~l~~L~~L~ls~n~i 346 (789)
. ..+..+++|++|++++|.+.......+. ....|+.|++++|.+.. .+...+..+++|+++++++|.+
T Consensus 211 ~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l 290 (319)
T cd00116 211 SALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKF 290 (319)
T ss_pred HHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCC
Confidence 1 1244556666666666665532111111 12345555555554431 2233445556777777777777
Q ss_pred CCCcc
Q 042537 347 SDTVP 351 (789)
Q Consensus 347 ~~~~~ 351 (789)
++...
T Consensus 291 ~~~~~ 295 (319)
T cd00116 291 GEEGA 295 (319)
T ss_pred cHHHH
Confidence 65533
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.70 E-value=3.6e-19 Score=154.14 Aligned_cols=181 Identities=25% Similarity=0.482 Sum_probs=157.9
Q ss_pred ccCCCCCcEEeCCCCcccccCchhhhhcCCCCcEEEcCCCcccccCCCCccCCCcCceEeccCCcccccCCccccccccC
Q 042537 498 FKSCSQLILMDLGKNGLSGEIPTWIGEGLPKLVVLSLKSNKFHGNIPFQVCQLSYIQILDLSLNNISGIIPKCLNNFTGM 577 (789)
Q Consensus 498 ~~~l~~L~~L~ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L 577 (789)
+.++...+.|.+|+|+++ .+|..+. .+.+|+.|++++|++. .+|..++.++.|+.|++.-|++. ..|..|+.++.|
T Consensus 29 Lf~~s~ITrLtLSHNKl~-~vppnia-~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~l 104 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLT-VVPPNIA-ELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPAL 104 (264)
T ss_pred ccchhhhhhhhcccCcee-ecCCcHH-Hhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchh
Confidence 345677889999999999 8998888 6999999999999998 78889999999999999999987 788888877766
Q ss_pred cccCCCccccccCcccccccccccccccceeEEEeeccccccccccCceeEEEcccCcccc-ccchhhhccccCcEEEcc
Q 042537 578 AQKSSSNLAITSNYTFERQGIEFLESYVDNVVLTWKGSQHEYRSTLGLVKILDFSMNKLSG-TIPEEIMDLVGLVALNLS 656 (789)
Q Consensus 578 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~p~~~~~l~~L~~L~Ls 656 (789)
++|||++|++.. .+|..|..++.|+.|+|+
T Consensus 105 -------------------------------------------------evldltynnl~e~~lpgnff~m~tlralyl~ 135 (264)
T KOG0617|consen 105 -------------------------------------------------EVLDLTYNNLNENSLPGNFFYMTTLRALYLG 135 (264)
T ss_pred -------------------------------------------------hhhhccccccccccCCcchhHHHHHHHHHhc
Confidence 899999999974 689999999999999999
Q ss_pred CCcceeecCcccccCCCCCEEeCCCCcccccCchhhhcCCCCCeEeccCCcccccCCCCCcccccc---ccccCCCCCCC
Q 042537 657 RNNLTGQITPKIDQLKSLDFLDLSQNQFVGGIPSSLCQLSRLSVMNLSYNNLSGKIPLGTQLQSFN---ASVYAGNPELC 733 (789)
Q Consensus 657 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~---~~~~~~n~~lc 733 (789)
.|.+. .+|+.++++++|+.|.+..|.+. ..|..++.+++|+.|.+.+|+++-..|+-+++.-.. ....+.|||.-
T Consensus 136 dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~vlppel~~l~l~~~k~v~r~E~NPwv~ 213 (264)
T KOG0617|consen 136 DNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLTVLPPELANLDLVGNKQVMRMEENPWVN 213 (264)
T ss_pred CCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceeeecChhhhhhhhhhhHHHHhhhhCCCCC
Confidence 99998 89999999999999999999998 789999999999999999999986666655544321 22367888865
No 22
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.69 E-value=5e-18 Score=178.80 Aligned_cols=234 Identities=23% Similarity=0.217 Sum_probs=123.2
Q ss_pred CCCCEEEcCCCcccc------CCCcccccCCCCcEEEcCCCcCcccCCccccccCc---ccEEEccCCeeee----eCCc
Q 042537 430 HKLEFLDLSNNILSG------RLPDCWMQFDRLAVLSLANNFFSGKIPKSMGFLHS---IQTLSLYNNSLIG----ELPS 496 (789)
Q Consensus 430 ~~L~~L~Ls~n~l~~------~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~---L~~L~L~~n~l~~----~~~~ 496 (789)
+.+++++++++.+.+ .++..+..+++|+.|++++|.+.+..+..+..+.. |++|++++|++.. .+..
T Consensus 51 ~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~ 130 (319)
T cd00116 51 PSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAK 130 (319)
T ss_pred CCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHH
Confidence 456666666665542 12334555666777777776666444444444443 7777777766652 1122
Q ss_pred CccCC-CCCcEEeCCCCcccccCchhh---hhcCCCCcEEEcCCCccccc----CCCCccCCCcCceEeccCCcccccCC
Q 042537 497 FFKSC-SQLILMDLGKNGLSGEIPTWI---GEGLPKLVVLSLKSNKFHGN----IPFQVCQLSYIQILDLSLNNISGIIP 568 (789)
Q Consensus 497 ~~~~l-~~L~~L~ls~n~l~~~~p~~~---~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~~~p 568 (789)
.+..+ ++|+.|++++|.+++.....+ +..+++|++|++++|.+++. ++..+..+++|+.|++++|.+++...
T Consensus 131 ~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~ 210 (319)
T cd00116 131 GLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGA 210 (319)
T ss_pred HHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHH
Confidence 33444 666777777776663222111 12345677777777666531 12223344566777777666653322
Q ss_pred ccccccccCcccCCCccccccCcccccccccccccccceeEEEeeccccccccccCceeEEEcccCccccccchhhhc--
Q 042537 569 KCLNNFTGMAQKSSSNLAITSNYTFERQGIEFLESYVDNVVLTWKGSQHEYRSTLGLVKILDFSMNKLSGTIPEEIMD-- 646 (789)
Q Consensus 569 ~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~-- 646 (789)
..+... ...++.|+.|++++|.+++.....+..
T Consensus 211 ~~l~~~---------------------------------------------~~~~~~L~~L~ls~n~l~~~~~~~l~~~~ 245 (319)
T cd00116 211 SALAET---------------------------------------------LASLKSLEVLNLGDNNLTDAGAAALASAL 245 (319)
T ss_pred HHHHHH---------------------------------------------hcccCCCCEEecCCCcCchHHHHHHHHHH
Confidence 111100 012234466777777666433333322
Q ss_pred ---cccCcEEEccCCccee----ecCcccccCCCCCEEeCCCCccccc----CchhhhcC-CCCCeEeccCCcc
Q 042537 647 ---LVGLVALNLSRNNLTG----QITPKIDQLKSLDFLDLSQNQFVGG----IPSSLCQL-SRLSVMNLSYNNL 708 (789)
Q Consensus 647 ---l~~L~~L~Ls~N~l~~----~~p~~~~~l~~L~~L~Ls~N~l~~~----~p~~l~~l-~~L~~L~ls~N~l 708 (789)
.+.|++|++++|.++. .+...+..+++|+.+|+++|.++.. ....+... +.|+++++.+|++
T Consensus 246 ~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 246 LSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF 319 (319)
T ss_pred hccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence 2567777777776651 2233445556677777777777643 33333344 5666666666653
No 23
>PLN03150 hypothetical protein; Provisional
Probab=99.56 E-value=2e-14 Score=162.19 Aligned_cols=148 Identities=31% Similarity=0.449 Sum_probs=123.5
Q ss_pred HHHHHHHHHHhhcCcCCCCCCCCCCCCCCCCCCC----ceeeeEecC--CC--CcEEEEEcCCCCCCCCcccccCccccC
Q 042537 2 EEEREALLEFKQSLVDEYGILSSWGREDDKRDCC----YWRGVRCSN--TT--GHVIVLDLQVLVHSEPLKGTISPSLLK 73 (789)
Q Consensus 2 ~~~~~~ll~~~~~~~~~~~~~~~w~~~~~~~~~c----~w~gv~c~~--~~--~~v~~l~L~~~~~~~~l~~~l~~~~~~ 73 (789)
++|.+||+++|+++.++.. .+|. +++|| .|.||.|.. .. .+|+.|+|++ +.+.|.+|+.+.+
T Consensus 371 ~~~~~aL~~~k~~~~~~~~--~~W~----g~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~----n~L~g~ip~~i~~ 440 (623)
T PLN03150 371 LEEVSALQTLKSSLGLPLR--FGWN----GDPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDN----QGLRGFIPNDISK 440 (623)
T ss_pred chHHHHHHHHHHhcCCccc--CCCC----CCCCCCcccccccceeeccCCCCceEEEEEECCC----CCccccCCHHHhC
Confidence 5789999999999876543 4797 33442 799999952 12 2599999998 8899999999999
Q ss_pred CCCCCEEeCCCCCCCCCCCcccccCCCCCCEEecCCCcCCCCCCccccCCCCCcEEeccCccCCCCcchHHhhCCC-CCC
Q 042537 74 LYHLRHLDLSENDFSGSRIPEFIGSLNKLRYLSLSSAEFEGPIPSQLGNLSRLKYLDLSYINLNKSRDWLRIIDKL-PSL 152 (789)
Q Consensus 74 l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l-~~L 152 (789)
+++|+.|+|++|.+.+. +|..++.+++|++|+|++|++++.+|..++++++|++|+|++|++++. +|..++.+ .++
T Consensus 441 L~~L~~L~Ls~N~l~g~-iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~--iP~~l~~~~~~~ 517 (623)
T PLN03150 441 LRHLQSINLSGNSIRGN-IPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGR--VPAALGGRLLHR 517 (623)
T ss_pred CCCCCEEECCCCcccCc-CChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCccccc--CChHHhhccccC
Confidence 99999999999999886 898999999999999999999999999999999999999999999874 67777653 466
Q ss_pred CEEEcCCCCC
Q 042537 153 RTLNLEHCHL 162 (789)
Q Consensus 153 ~~L~L~~n~l 162 (789)
..+++.+|..
T Consensus 518 ~~l~~~~N~~ 527 (623)
T PLN03150 518 ASFNFTDNAG 527 (623)
T ss_pred ceEEecCCcc
Confidence 7788887753
No 24
>PLN03150 hypothetical protein; Provisional
Probab=99.51 E-value=6.3e-14 Score=158.18 Aligned_cols=118 Identities=38% Similarity=0.640 Sum_probs=105.5
Q ss_pred ceeEEEcccCccccccchhhhccccCcEEEccCCcceeecCcccccCCCCCEEeCCCCcccccCchhhhcCCCCCeEecc
Q 042537 625 LVKILDFSMNKLSGTIPEEIMDLVGLVALNLSRNNLTGQITPKIDQLKSLDFLDLSQNQFVGGIPSSLCQLSRLSVMNLS 704 (789)
Q Consensus 625 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls 704 (789)
.++.|+|++|.+.|.+|..++.+++|+.|+|++|+++|.+|..++.+++|+.|||++|++++.+|+.+..+++|++|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccccCCCCC--ccccccccccCCCCCCCCCCCCCCCC
Q 042537 705 YNNLSGKIPLGT--QLQSFNASVYAGNPELCGLPLRNKCP 742 (789)
Q Consensus 705 ~N~l~~~~p~~~--~~~~~~~~~~~~n~~lc~~~l~~~c~ 742 (789)
+|+++|.+|... .+.......+.+|+.+|+.|....|.
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l~~C~ 538 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACG 538 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCccccCCCCCCCCc
Confidence 999999999742 22233455689999999987656674
No 25
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.35 E-value=2.4e-14 Score=147.31 Aligned_cols=194 Identities=29% Similarity=0.421 Sum_probs=138.2
Q ss_pred CCCCEEEcCCCccccCCCcccccCCCCcEEEcCCCcCcccCCccccccCcccEEEccCCeeeeeCCcCccCCCCCcEEeC
Q 042537 430 HKLEFLDLSNNILSGRLPDCWMQFDRLAVLSLANNFFSGKIPKSMGFLHSIQTLSLYNNSLIGELPSFFKSCSQLILMDL 509 (789)
Q Consensus 430 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 509 (789)
.--...|++.|++. .+|..++.+..|+.+.+..|.+. .+|.++..+..|++++++.|+++ .+|..++.| -|+.|-+
T Consensus 75 tdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~l-pLkvli~ 150 (722)
T KOG0532|consen 75 TDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDL-PLKVLIV 150 (722)
T ss_pred cchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcC-cceeEEE
Confidence 33456677777776 67777777777777777777777 66777777777788888887776 555555555 3777777
Q ss_pred CCCcccccCchhhhhcCCCCcEEEcCCCcccccCCCCccCCCcCceEeccCCcccccCCccccccccCcccCCCcccccc
Q 042537 510 GKNGLSGEIPTWIGEGLPKLVVLSLKSNKFHGNIPFQVCQLSYIQILDLSLNNISGIIPKCLNNFTGMAQKSSSNLAITS 589 (789)
Q Consensus 510 s~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~ 589 (789)
++|+++ .+|..+. .++.|..|+.+.|++. .+|..++++.+|+.|.+..|++.. .|..+..++
T Consensus 151 sNNkl~-~lp~~ig-~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~~-lp~El~~Lp-------------- 212 (722)
T KOG0532|consen 151 SNNKLT-SLPEEIG-LLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLED-LPEELCSLP-------------- 212 (722)
T ss_pred ecCccc-cCCcccc-cchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhhh-CCHHHhCCc--------------
Confidence 778777 7777777 6777777888888776 566677777788888887777763 333333221
Q ss_pred CcccccccccccccccceeEEEeeccccccccccCceeEEEcccCccccccchhhhccccCcEEEccCCcceeecCccc-
Q 042537 590 NYTFERQGIEFLESYVDNVVLTWKGSQHEYRSTLGLVKILDFSMNKLSGTIPEEIMDLVGLVALNLSRNNLTGQITPKI- 668 (789)
Q Consensus 590 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~- 668 (789)
|..||+|+|+++ .+|-.|.+|+.|++|-|.+|.+. ..|..+
T Consensus 213 ------------------------------------Li~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC 254 (722)
T KOG0532|consen 213 ------------------------------------LIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ-SPPAQIC 254 (722)
T ss_pred ------------------------------------eeeeecccCcee-ecchhhhhhhhheeeeeccCCCC-CChHHHH
Confidence 367888888887 78888888888888888888887 455544
Q ss_pred --ccCCCCCEEeCCCCc
Q 042537 669 --DQLKSLDFLDLSQNQ 683 (789)
Q Consensus 669 --~~l~~L~~L~Ls~N~ 683 (789)
+...--++|+..-++
T Consensus 255 ~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 255 EKGKVHIFKYLSTQACQ 271 (722)
T ss_pred hccceeeeeeecchhcc
Confidence 444556677777764
No 26
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.34 E-value=7.4e-14 Score=143.81 Aligned_cols=213 Identities=25% Similarity=0.397 Sum_probs=171.4
Q ss_pred EEcCCCccccCCCccc-ccCCCCcEEEcCCCcCcccCCccccccCcccEEEccCCeeeeeCCcCccCCCCCcEEeCCCCc
Q 042537 435 LDLSNNILSGRLPDCW-MQFDRLAVLSLANNFFSGKIPKSMGFLHSIQTLSLYNNSLIGELPSFFKSCSQLILMDLGKNG 513 (789)
Q Consensus 435 L~Ls~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~ 513 (789)
|.|++-++....-.++ ..+.--...|++.|++. .+|..+..+..|+.+.++.|.+. .+|..+.++..|+++||+.|+
T Consensus 55 l~Ls~rrlk~fpr~a~~~~ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~Nq 132 (722)
T KOG0532|consen 55 LLLSGRRLKEFPRGAASYDLTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQ 132 (722)
T ss_pred cccccchhhcCCCccccccccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccch
Confidence 4455544442211122 33445567899999999 78888888899999999999998 778899999999999999999
Q ss_pred ccccCchhhhhcCCCCcEEEcCCCcccccCCCCccCCCcCceEeccCCcccccCCccccccccCcccCCCccccccCccc
Q 042537 514 LSGEIPTWIGEGLPKLVVLSLKSNKFHGNIPFQVCQLSYIQILDLSLNNISGIIPKCLNNFTGMAQKSSSNLAITSNYTF 593 (789)
Q Consensus 514 l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~ 593 (789)
++ .+|..++ .+ -|+.|-+++|+++ .+|..++.+..|..||.+.|.+. .+|..++.+.++
T Consensus 133 lS-~lp~~lC-~l-pLkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~sl---------------- 191 (722)
T KOG0532|consen 133 LS-HLPDGLC-DL-PLKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSL---------------- 191 (722)
T ss_pred hh-cCChhhh-cC-cceeEEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHH----------------
Confidence 99 9999887 45 4999999999998 78888888999999999999988 455556666555
Q ss_pred ccccccccccccceeEEEeeccccccccccCceeEEEcccCccccccchhhhccccCcEEEccCCcceeecCcccccCCC
Q 042537 594 ERQGIEFLESYVDNVVLTWKGSQHEYRSTLGLVKILDFSMNKLSGTIPEEIMDLVGLVALNLSRNNLTGQITPKIDQLKS 673 (789)
Q Consensus 594 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 673 (789)
+.|.+..|++. .+|+++..|+ |..||+|.|+++ .+|-.|..|+.
T Consensus 192 ---------------------------------r~l~vrRn~l~-~lp~El~~Lp-Li~lDfScNkis-~iPv~fr~m~~ 235 (722)
T KOG0532|consen 192 ---------------------------------RDLNVRRNHLE-DLPEELCSLP-LIRLDFSCNKIS-YLPVDFRKMRH 235 (722)
T ss_pred ---------------------------------HHHHHhhhhhh-hCCHHHhCCc-eeeeecccCcee-ecchhhhhhhh
Confidence 77888889988 6788888654 889999999998 89999999999
Q ss_pred CCEEeCCCCcccccCchhh---hcCCCCCeEeccCCc
Q 042537 674 LDFLDLSQNQFVGGIPSSL---CQLSRLSVMNLSYNN 707 (789)
Q Consensus 674 L~~L~Ls~N~l~~~~p~~l---~~l~~L~~L~ls~N~ 707 (789)
|++|-|.+|.++ ..|..+ +...-.++|+..-++
T Consensus 236 Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 236 LQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred heeeeeccCCCC-CChHHHHhccceeeeeeecchhcc
Confidence 999999999998 566655 344566788887773
No 27
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.24 E-value=1e-11 Score=134.50 Aligned_cols=199 Identities=34% Similarity=0.485 Sum_probs=112.2
Q ss_pred EEEcCCCccccCCCcccccCCCCcEEEcCCCcCcccCCccccccC-cccEEEccCCeeeeeCCcCccCCCCCcEEeCCCC
Q 042537 434 FLDLSNNILSGRLPDCWMQFDRLAVLSLANNFFSGKIPKSMGFLH-SIQTLSLYNNSLIGELPSFFKSCSQLILMDLGKN 512 (789)
Q Consensus 434 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n 512 (789)
.+++..+.+.. ....+..++.++.|++.+|.++ .++....... +|+.|++++|.+. .+|..+..+++|+.|++++|
T Consensus 97 ~l~~~~~~~~~-~~~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N 173 (394)
T COG4886 97 SLDLNLNRLRS-NISELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFN 173 (394)
T ss_pred eeecccccccc-CchhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCc
Confidence 46666666542 2223444466777777777777 3444444443 6777777777766 33345666777777777777
Q ss_pred cccccCchhhhhcCCCCcEEEcCCCcccccCCCCccCCCcCceEeccCCcccccCCccccccccCcccCCCccccccCcc
Q 042537 513 GLSGEIPTWIGEGLPKLVVLSLKSNKFHGNIPFQVCQLSYIQILDLSLNNISGIIPKCLNNFTGMAQKSSSNLAITSNYT 592 (789)
Q Consensus 513 ~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~ 592 (789)
++. .+|.... ..+.|+.|++++|++. .+|........|+++.+++|++. ..+..+.++..
T Consensus 174 ~l~-~l~~~~~-~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~---------------- 233 (394)
T COG4886 174 DLS-DLPKLLS-NLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKN---------------- 233 (394)
T ss_pred hhh-hhhhhhh-hhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhccc----------------
Confidence 776 6665543 3566777777777766 44444344445666666666422 12222222222
Q ss_pred cccccccccccccceeEEEeeccccccccccCceeEEEcccCccccccchhhhccccCcEEEccCCcceeecCcccccCC
Q 042537 593 FERQGIEFLESYVDNVVLTWKGSQHEYRSTLGLVKILDFSMNKLSGTIPEEIMDLVGLVALNLSRNNLTGQITPKIDQLK 672 (789)
Q Consensus 593 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~ 672 (789)
+..+.+++|++. .++..++.++.++.|++++|.++ .++. ++.+.
T Consensus 234 ---------------------------------l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~-~i~~-~~~~~ 277 (394)
T COG4886 234 ---------------------------------LSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQIS-SISS-LGSLT 277 (394)
T ss_pred ---------------------------------ccccccCCceee-eccchhccccccceecccccccc-cccc-ccccC
Confidence 244455555554 33455566666666666666665 2333 56666
Q ss_pred CCCEEeCCCCcccccCchh
Q 042537 673 SLDFLDLSQNQFVGGIPSS 691 (789)
Q Consensus 673 ~L~~L~Ls~N~l~~~~p~~ 691 (789)
+++.||+++|.+....|..
T Consensus 278 ~l~~L~~s~n~~~~~~~~~ 296 (394)
T COG4886 278 NLRELDLSGNSLSNALPLI 296 (394)
T ss_pred ccCEEeccCccccccchhh
Confidence 6666666666666554443
No 28
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.22 E-value=1.2e-11 Score=133.89 Aligned_cols=197 Identities=30% Similarity=0.431 Sum_probs=100.3
Q ss_pred EEEcCCCcCcccCCccccccCcccEEEccCCeeeeeCCcCccCCC-CCcEEeCCCCcccccCchhhhhcCCCCcEEEcCC
Q 042537 458 VLSLANNFFSGKIPKSMGFLHSIQTLSLYNNSLIGELPSFFKSCS-QLILMDLGKNGLSGEIPTWIGEGLPKLVVLSLKS 536 (789)
Q Consensus 458 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~ls~n~l~~~~p~~~~~~l~~L~~L~L~~ 536 (789)
.+++..|.+... .......+.++.|++.+|.++ .++....... +|+.|++++|.+. .+|..+. .+++|+.|++++
T Consensus 97 ~l~~~~~~~~~~-~~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~-~l~~L~~L~l~~ 172 (394)
T COG4886 97 SLDLNLNRLRSN-ISELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLR-NLPNLKNLDLSF 172 (394)
T ss_pred eeeccccccccC-chhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhh-ccccccccccCC
Confidence 455555555322 122333455566666666655 2333333342 5666666666665 5544443 456666666666
Q ss_pred CcccccCCCCccCCCcCceEeccCCcccccCCccccccccCcccCCCccccccCcccccccccccccccceeEEEeeccc
Q 042537 537 NKFHGNIPFQVCQLSYIQILDLSLNNISGIIPKCLNNFTGMAQKSSSNLAITSNYTFERQGIEFLESYVDNVVLTWKGSQ 616 (789)
Q Consensus 537 n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 616 (789)
|++. .+|...+..+.|+.|++++|+++.. |......
T Consensus 173 N~l~-~l~~~~~~~~~L~~L~ls~N~i~~l-~~~~~~~------------------------------------------ 208 (394)
T COG4886 173 NDLS-DLPKLLSNLSNLNNLDLSGNKISDL-PPEIELL------------------------------------------ 208 (394)
T ss_pred chhh-hhhhhhhhhhhhhheeccCCccccC-chhhhhh------------------------------------------
Confidence 6665 3333333555566666666665522 2211111
Q ss_pred cccccccCceeEEEcccCccccccchhhhccccCcEEEccCCcceeecCcccccCCCCCEEeCCCCcccccCchhhhcCC
Q 042537 617 HEYRSTLGLVKILDFSMNKLSGTIPEEIMDLVGLVALNLSRNNLTGQITPKIDQLKSLDFLDLSQNQFVGGIPSSLCQLS 696 (789)
Q Consensus 617 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~ 696 (789)
..|+++++++|++. ..+..+..+..+..|.+++|++. ..+..++.+++++.|++++|+++...+ +..+.
T Consensus 209 -------~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~~i~~--~~~~~ 277 (394)
T COG4886 209 -------SALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQISSISS--LGSLT 277 (394)
T ss_pred -------hhhhhhhhcCCcce-ecchhhhhcccccccccCCceee-eccchhccccccceecccccccccccc--ccccC
Confidence 11255555555433 34445555566666666666655 234555555556666666666653322 55556
Q ss_pred CCCeEeccCCcccccCC
Q 042537 697 RLSVMNLSYNNLSGKIP 713 (789)
Q Consensus 697 ~L~~L~ls~N~l~~~~p 713 (789)
+++.|++++|.++...|
T Consensus 278 ~l~~L~~s~n~~~~~~~ 294 (394)
T COG4886 278 NLRELDLSGNSLSNALP 294 (394)
T ss_pred ccCEEeccCccccccch
Confidence 66666666665554444
No 29
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.18 E-value=5.3e-12 Score=119.95 Aligned_cols=132 Identities=28% Similarity=0.283 Sum_probs=95.8
Q ss_pred CCCcEEEcCCCcccccCCCCccCCCcCceEeccCCcccccCCccccccccCcccCCCccccccCcccccccccccccccc
Q 042537 527 PKLVVLSLKSNKFHGNIPFQVCQLSYIQILDLSLNNISGIIPKCLNNFTGMAQKSSSNLAITSNYTFERQGIEFLESYVD 606 (789)
Q Consensus 527 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 606 (789)
..|+++||++|.|+ .+..+..-.+.++.|++|+|.+..+.. +..
T Consensus 284 q~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v~n--La~--------------------------------- 327 (490)
T KOG1259|consen 284 QELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTVQN--LAE--------------------------------- 327 (490)
T ss_pred hhhhhccccccchh-hhhhhhhhccceeEEeccccceeeehh--hhh---------------------------------
Confidence 45777777777777 445566667777888888887763311 222
Q ss_pred eeEEEeeccccccccccCceeEEEcccCccccccchhhhccccCcEEEccCCcceeecCcccccCCCCCEEeCCCCcccc
Q 042537 607 NVVLTWKGSQHEYRSTLGLVKILDFSMNKLSGTIPEEIMDLVGLVALNLSRNNLTGQITPKIDQLKSLDFLDLSQNQFVG 686 (789)
Q Consensus 607 ~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 686 (789)
+++|+.||||+|.++ .+..+-..+-+.+.|+|++|.|.. -..++++-+|..||+++|+|..
T Consensus 328 ----------------L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~N~iE~--LSGL~KLYSLvnLDl~~N~Ie~ 388 (490)
T KOG1259|consen 328 ----------------LPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQNKIET--LSGLRKLYSLVNLDLSSNQIEE 388 (490)
T ss_pred ----------------cccceEeecccchhH-hhhhhHhhhcCEeeeehhhhhHhh--hhhhHhhhhheeccccccchhh
Confidence 234478888888887 444455667788899999998863 4567888899999999999975
Q ss_pred cCc-hhhhcCCCCCeEeccCCcccccCC
Q 042537 687 GIP-SSLCQLSRLSVMNLSYNNLSGKIP 713 (789)
Q Consensus 687 ~~p-~~l~~l~~L~~L~ls~N~l~~~~p 713 (789)
... ..+++||.|+.+.+.+|++++.+.
T Consensus 389 ldeV~~IG~LPCLE~l~L~~NPl~~~vd 416 (490)
T KOG1259|consen 389 LDEVNHIGNLPCLETLRLTGNPLAGSVD 416 (490)
T ss_pred HHHhcccccccHHHHHhhcCCCccccch
Confidence 533 568889999999999999986544
No 30
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.14 E-value=1.2e-11 Score=124.06 Aligned_cols=215 Identities=24% Similarity=0.225 Sum_probs=139.4
Q ss_pred cCCCCCCEEecCCCcCCCCCC--ccccCCCCCcEEeccCccCCCCcchHHhhCCCCCCCEEEcCCCCCCCCccccccccc
Q 042537 97 GSLNKLRYLSLSSAEFEGPIP--SQLGNLSRLKYLDLSYINLNKSRDWLRIIDKLPSLRTLNLEHCHLPPIIPSDLLHLN 174 (789)
Q Consensus 97 ~~l~~L~~L~Ls~n~i~~~~p--~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~ 174 (789)
.++++|+...|.++.+. ..+ .....+++++.||||+|-+.....+......+|+|+.|+++.|.+........ ...
T Consensus 118 sn~kkL~~IsLdn~~V~-~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~-~~~ 195 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVE-DAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNT-TLL 195 (505)
T ss_pred hhHHhhhheeecCcccc-ccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccc-hhh
Confidence 56788888888888766 233 35667888888888888888766666777888888888888888765433211 122
Q ss_pred cCCCCCCeEEccCCCCCCCchhHHHhhcCCCcEEEccCCCCcccCchhhhcCCCCcEEECCCCCccEEecCCCcCcccch
Q 042537 175 FSTSSLGALYLFENSLSSSIYPWLFNISSKLVVLDLDSNLLQGSLLEPFDRMVSLRTLYLGFNELEELFLGKNRLNGTIN 254 (789)
Q Consensus 175 l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~L~~L~L~~n~l~~~~~ 254 (789)
+ ++|+.|.++.|.++..-...+....|.|+.|+|..|....+......-+..|+.|+|++|++-..+. -
T Consensus 196 l--~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~---------~ 264 (505)
T KOG3207|consen 196 L--SHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQ---------G 264 (505)
T ss_pred h--hhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccccccc---------c
Confidence 3 7888888888888754444555555688888888885443444455567778888888665443321 1
Q ss_pred hhhhCCCCCCEEEccCCCCCCccChhh-----hhcCCCCcEEEccCCcccccc-cCCCCCcccceeEeccCccCCC
Q 042537 255 QWLSRMYKLDALSLSGNSLTGVVTESV-----FSELSNLKALHLDDNSFTLKF-SHDWIPPFQLIIILLGSCQMGP 324 (789)
Q Consensus 255 ~~l~~l~~L~~L~L~~n~l~~~~~~~~-----~~~l~~L~~L~L~~n~i~~~~-~~~~~~~~~L~~L~l~~~~~~~ 324 (789)
...+.++.|+.|+++.+.+...-..+. ...+++|++|+++.|+|..-. -..+..+.+|+.+.+..+.+..
T Consensus 265 ~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~ 340 (505)
T KOG3207|consen 265 YKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNK 340 (505)
T ss_pred cccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccccccc
Confidence 235667778888888877763211111 345678888888888774211 1122334566666666666653
No 31
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.08 E-value=1.1e-11 Score=124.25 Aligned_cols=84 Identities=25% Similarity=0.301 Sum_probs=50.1
Q ss_pred eeEEEcccCcccccc-chhhhccccCcEEEccCCcceee-cCcc-----cccCCCCCEEeCCCCcccccC-chhhhcCCC
Q 042537 626 VKILDFSMNKLSGTI-PEEIMDLVGLVALNLSRNNLTGQ-ITPK-----IDQLKSLDFLDLSQNQFVGGI-PSSLCQLSR 697 (789)
Q Consensus 626 L~~L~Ls~N~l~~~~-p~~~~~l~~L~~L~Ls~N~l~~~-~p~~-----~~~l~~L~~L~Ls~N~l~~~~-p~~l~~l~~ 697 (789)
|+.|||++|++.... -...+.++.|+.|+++.+.+... .|+. ...+++|+.|+++.|++...- -..+..+++
T Consensus 248 L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~n 327 (505)
T KOG3207|consen 248 LQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLEN 327 (505)
T ss_pred HhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccch
Confidence 466666666665321 03356677777777777777643 2222 355677788888888775221 133445567
Q ss_pred CCeEeccCCccc
Q 042537 698 LSVMNLSYNNLS 709 (789)
Q Consensus 698 L~~L~ls~N~l~ 709 (789)
|+.|.+..|+++
T Consensus 328 lk~l~~~~n~ln 339 (505)
T KOG3207|consen 328 LKHLRITLNYLN 339 (505)
T ss_pred hhhhhccccccc
Confidence 777777777775
No 32
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.06 E-value=4.1e-11 Score=117.02 Aligned_cols=210 Identities=25% Similarity=0.283 Sum_probs=106.8
Q ss_pred CccccCCCCCCEEeCCCCCCCCC---CCcccccCCCCCCEEecCCCc---CCCCCCcc-------ccCCCCCcEEeccCc
Q 042537 68 SPSLLKLYHLRHLDLSENDFSGS---RIPEFIGSLNKLRYLSLSSAE---FEGPIPSQ-------LGNLSRLKYLDLSYI 134 (789)
Q Consensus 68 ~~~~~~l~~L~~L~Ls~n~i~~~---~~~~~~~~l~~L~~L~Ls~n~---i~~~~p~~-------~~~l~~L~~L~Ls~n 134 (789)
-+.+..+..+++++||+|.+... .+...+.+-++|+..++|.-- ....+|.+ +...++|++||||.|
T Consensus 23 ~~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDN 102 (382)
T KOG1909|consen 23 EEELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDN 102 (382)
T ss_pred HHHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeecccc
Confidence 34566778889999999988632 123456667788888887532 22233433 345567777777777
Q ss_pred cCCC--CcchHHhhCCCCCCCEEEcCCCCCCCCccccccccccCCCCCCeEEccCCCCCCCchhHHHhhcCCCcEEEccC
Q 042537 135 NLNK--SRDWLRIIDKLPSLRTLNLEHCHLPPIIPSDLLHLNFSTSSLGALYLFENSLSSSIYPWLFNISSKLVVLDLDS 212 (789)
Q Consensus 135 ~l~~--~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~ 212 (789)
-+.. ++.+-..+.++..|++|.|.+|.+...-.. .++ ..|+.|. .++. ....++|+++..+.
T Consensus 103 A~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~--~l~----~al~~l~--~~kk--------~~~~~~Lrv~i~~r 166 (382)
T KOG1909|consen 103 AFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGG--RLG----RALFELA--VNKK--------AASKPKLRVFICGR 166 (382)
T ss_pred ccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHH--HHH----HHHHHHH--HHhc--------cCCCcceEEEEeec
Confidence 6542 233444556667777777777765322110 000 1111111 0000 01112566666666
Q ss_pred CCCcccCc----hhhhcCCCCcEEECCCCCccEEecCCCcCcccchhhhhCCCCCCEEEccCCCCCCc---cChhhhhcC
Q 042537 213 NLLQGSLL----EPFDRMVSLRTLYLGFNELEELFLGKNRLNGTINQWLSRMYKLDALSLSGNSLTGV---VTESVFSEL 285 (789)
Q Consensus 213 n~i~~~~~----~~~~~l~~L~~L~L~~n~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~---~~~~~~~~l 285 (789)
|++..... ..|...+.|+.+.+..|.+.. ..+ ..+...|..+++|+.|||.+|.++.. .-...+..+
T Consensus 167 Nrlen~ga~~~A~~~~~~~~leevr~~qN~I~~-----eG~-~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~ 240 (382)
T KOG1909|consen 167 NRLENGGATALAEAFQSHPTLEEVRLSQNGIRP-----EGV-TALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSW 240 (382)
T ss_pred cccccccHHHHHHHHHhccccceEEEecccccC-----chh-HHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhccc
Confidence 65543222 234445555555555443321 011 12334455666666666666665521 111234455
Q ss_pred CCCcEEEccCCccc
Q 042537 286 SNLKALHLDDNSFT 299 (789)
Q Consensus 286 ~~L~~L~L~~n~i~ 299 (789)
++|++|++++|.+.
T Consensus 241 ~~L~El~l~dcll~ 254 (382)
T KOG1909|consen 241 PHLRELNLGDCLLE 254 (382)
T ss_pred chheeecccccccc
Confidence 55666666655554
No 33
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.05 E-value=3.3e-10 Score=104.24 Aligned_cols=76 Identities=29% Similarity=0.388 Sum_probs=26.9
Q ss_pred eeEEEcccCccccccchhh-hccccCcEEEccCCcceeec-CcccccCCCCCEEeCCCCcccccCc---hhhhcCCCCCe
Q 042537 626 VKILDFSMNKLSGTIPEEI-MDLVGLVALNLSRNNLTGQI-TPKIDQLKSLDFLDLSQNQFVGGIP---SSLCQLSRLSV 700 (789)
Q Consensus 626 L~~L~Ls~N~l~~~~p~~~-~~l~~L~~L~Ls~N~l~~~~-p~~~~~l~~L~~L~Ls~N~l~~~~p---~~l~~l~~L~~ 700 (789)
|+.|++++|+|+. +++.+ ..+++|++|+|++|+|.... -..+..+++|+.|+|.+|.+....- ..+..+|+|+.
T Consensus 66 L~~L~L~~N~I~~-i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~ 144 (175)
T PF14580_consen 66 LKTLDLSNNRISS-ISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKV 144 (175)
T ss_dssp --EEE--SS---S--CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SE
T ss_pred hhhcccCCCCCCc-cccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhhe
Confidence 3666666666663 33333 34666666666666665321 1234555666666666666653211 23445566666
Q ss_pred Ee
Q 042537 701 MN 702 (789)
Q Consensus 701 L~ 702 (789)
||
T Consensus 145 LD 146 (175)
T PF14580_consen 145 LD 146 (175)
T ss_dssp ET
T ss_pred eC
Confidence 54
No 34
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.01 E-value=1.2e-10 Score=113.82 Aligned_cols=93 Identities=25% Similarity=0.234 Sum_probs=65.7
Q ss_pred CCcEEEEEcCCCCCCCCcccccCccccCCCCCCEEeCCCCCCCCC---CCc-------ccccCCCCCCEEecCCCcCCCC
Q 042537 46 TGHVIVLDLQVLVHSEPLKGTISPSLLKLYHLRHLDLSENDFSGS---RIP-------EFIGSLNKLRYLSLSSAEFEGP 115 (789)
Q Consensus 46 ~~~v~~l~L~~~~~~~~l~~~l~~~~~~l~~L~~L~Ls~n~i~~~---~~~-------~~~~~l~~L~~L~Ls~n~i~~~ 115 (789)
...++.++|+++..+..-...+.+.+.+.+.|+.-++|.-- ++. .+| ..+..+++|++||||.|.+...
T Consensus 29 ~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~f-tGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~ 107 (382)
T KOG1909|consen 29 MDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMF-TGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPK 107 (382)
T ss_pred cCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhh-cCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCcc
Confidence 45789999999322222233456678888999999998642 221 133 2455678999999999998654
Q ss_pred CCcc----ccCCCCCcEEeccCccCCCC
Q 042537 116 IPSQ----LGNLSRLKYLDLSYINLNKS 139 (789)
Q Consensus 116 ~p~~----~~~l~~L~~L~Ls~n~l~~~ 139 (789)
-+.. +..++.|++|.|.+|.+...
T Consensus 108 g~~~l~~ll~s~~~L~eL~L~N~Glg~~ 135 (382)
T KOG1909|consen 108 GIRGLEELLSSCTDLEELYLNNCGLGPE 135 (382)
T ss_pred chHHHHHHHHhccCHHHHhhhcCCCChh
Confidence 4444 46789999999999988753
No 35
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.95 E-value=2.6e-10 Score=108.66 Aligned_cols=108 Identities=28% Similarity=0.313 Sum_probs=87.8
Q ss_pred ccCCCCcEEEcCCCcCcccCCccccccCcccEEEccCCeeeeeCCcCccCCCCCcEEeCCCCcccccCchhhhhcCCCCc
Q 042537 451 MQFDRLAVLSLANNFFSGKIPKSMGFLHSIQTLSLYNNSLIGELPSFFKSCSQLILMDLGKNGLSGEIPTWIGEGLPKLV 530 (789)
Q Consensus 451 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~l~~L~ 530 (789)
.....|+.+||++|.|+ .+.++..-.+.++.|++++|.|..+. .+..+++|+.||+|+|.++ .+..|-. .+.+.+
T Consensus 281 dTWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v~--nLa~L~~L~~LDLS~N~Ls-~~~Gwh~-KLGNIK 355 (490)
T KOG1259|consen 281 DTWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTVQ--NLAELPQLQLLDLSGNLLA-ECVGWHL-KLGNIK 355 (490)
T ss_pred chHhhhhhccccccchh-hhhhhhhhccceeEEeccccceeeeh--hhhhcccceEeecccchhH-hhhhhHh-hhcCEe
Confidence 34456889999999998 56677778889999999999998543 3788899999999999998 7777766 688999
Q ss_pred EEEcCCCcccccCCCCccCCCcCceEeccCCcccc
Q 042537 531 VLSLKSNKFHGNIPFQVCQLSYIQILDLSLNNISG 565 (789)
Q Consensus 531 ~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 565 (789)
.|.|+.|.+... ..+..+-+|..||+++|+|..
T Consensus 356 tL~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ 388 (490)
T KOG1259|consen 356 TLKLAQNKIETL--SGLRKLYSLVNLDLSSNQIEE 388 (490)
T ss_pred eeehhhhhHhhh--hhhHhhhhheeccccccchhh
Confidence 999999988743 256778889999999998863
No 36
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.91 E-value=1.8e-09 Score=99.40 Aligned_cols=110 Identities=25% Similarity=0.297 Sum_probs=36.2
Q ss_pred ccCCCCcEEEcCCCcCcccCCcccc-ccCcccEEEccCCeeeeeCCcCccCCCCCcEEeCCCCcccccCchhhhhcCCCC
Q 042537 451 MQFDRLAVLSLANNFFSGKIPKSMG-FLHSIQTLSLYNNSLIGELPSFFKSCSQLILMDLGKNGLSGEIPTWIGEGLPKL 529 (789)
Q Consensus 451 ~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~l~~L 529 (789)
.+..++++|+|.+|.|+.+ . .++ .+.+|+.|++++|.|+.. +.+..++.|++|++++|+|+ .++..+...+++|
T Consensus 16 ~n~~~~~~L~L~~n~I~~I-e-~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L 90 (175)
T PF14580_consen 16 NNPVKLRELNLRGNQISTI-E-NLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNL 90 (175)
T ss_dssp ----------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS----S-CHHHHHH-TT-
T ss_pred ccccccccccccccccccc-c-chhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCC-ccccchHHhCCcC
Confidence 3444566777777777632 2 343 456777777777777643 24666777777777777777 5655444357788
Q ss_pred cEEEcCCCcccccCC-CCccCCCcCceEeccCCcccc
Q 042537 530 VVLSLKSNKFHGNIP-FQVCQLSYIQILDLSLNNISG 565 (789)
Q Consensus 530 ~~L~L~~n~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~ 565 (789)
++|++++|+|..... ..+..+++|+.|++.+|+++.
T Consensus 91 ~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~ 127 (175)
T PF14580_consen 91 QELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCE 127 (175)
T ss_dssp -EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGG
T ss_pred CEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccc
Confidence 888888887764321 245667788888888888763
No 37
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.90 E-value=1.1e-09 Score=82.77 Aligned_cols=60 Identities=37% Similarity=0.494 Sum_probs=34.2
Q ss_pred cCcEEEccCCcceeecCcccccCCCCCEEeCCCCcccccCchhhhcCCCCCeEeccCCcc
Q 042537 649 GLVALNLSRNNLTGQITPKIDQLKSLDFLDLSQNQFVGGIPSSLCQLSRLSVMNLSYNNL 708 (789)
Q Consensus 649 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l 708 (789)
+|++|++++|+++...+..|..+++|++|++++|+++...|..|..+++|++|++++|+|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 455555555555544445555555666666666666555555555666666666665543
No 38
>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.
Probab=98.89 E-value=1.7e-09 Score=74.26 Aligned_cols=41 Identities=49% Similarity=0.953 Sum_probs=30.8
Q ss_pred CHHHHHHHHHHhhcCc-CCCCCCCCCCCCCC-CCCCCceeeeEec
Q 042537 1 MEEEREALLEFKQSLV-DEYGILSSWGREDD-KRDCCYWRGVRCS 43 (789)
Q Consensus 1 ~~~~~~~ll~~~~~~~-~~~~~~~~w~~~~~-~~~~c~w~gv~c~ 43 (789)
+++|++||++||+++. +|.+.+.+|+. . ..+||+|.||+|+
T Consensus 1 ~~~d~~aLl~~k~~l~~~~~~~l~~W~~--~~~~~~C~W~GV~Cd 43 (43)
T PF08263_consen 1 PNQDRQALLAFKKSLNNDPSGVLSSWNP--SSDSDPCSWSGVTCD 43 (43)
T ss_dssp -HHHHHHHHHHHHCTT-SC-CCCTT--T--T--S-CCCSTTEEE-
T ss_pred CcHHHHHHHHHHHhcccccCcccccCCC--cCCCCCeeeccEEeC
Confidence 4789999999999998 57789999984 2 2799999999995
No 39
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.88 E-value=1.9e-10 Score=124.58 Aligned_cols=85 Identities=24% Similarity=0.292 Sum_probs=60.9
Q ss_pred eeEEEcccCccccccchhhhccccCcEEEccCCcceeecCcccccCCCCCEEeCCCCccccc---Cchh-hhcCCCCCeE
Q 042537 626 VKILDFSMNKLSGTIPEEIMDLVGLVALNLSRNNLTGQITPKIDQLKSLDFLDLSQNQFVGG---IPSS-LCQLSRLSVM 701 (789)
Q Consensus 626 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~---~p~~-l~~l~~L~~L 701 (789)
|+.+++++|.+. .++..+..+..+..|++++|++.. -..+.....+..+....|.+... .... ....+.++.+
T Consensus 234 L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (414)
T KOG0531|consen 234 LRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISN--LEGLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTL 310 (414)
T ss_pred HHHHhcccCccc-cccccccccccccccchhhccccc--cccccccchHHHhccCcchhcchhhhhcccccccccccccc
Confidence 578888888887 454667788888889999888864 23356667778888888887622 1121 4556788888
Q ss_pred eccCCcccccCC
Q 042537 702 NLSYNNLSGKIP 713 (789)
Q Consensus 702 ~ls~N~l~~~~p 713 (789)
.+.+|+.....+
T Consensus 311 ~~~~~~~~~~~~ 322 (414)
T KOG0531|consen 311 TLELNPIRKISS 322 (414)
T ss_pred ccccCccccccc
Confidence 888888876655
No 40
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.86 E-value=2.2e-09 Score=81.02 Aligned_cols=61 Identities=38% Similarity=0.506 Sum_probs=56.8
Q ss_pred CceeEEEcccCccccccchhhhccccCcEEEccCCcceeecCcccccCCCCCEEeCCCCcc
Q 042537 624 GLVKILDFSMNKLSGTIPEEIMDLVGLVALNLSRNNLTGQITPKIDQLKSLDFLDLSQNQF 684 (789)
Q Consensus 624 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l 684 (789)
++|+.|++++|+++...+..|.++++|++|++++|+++...|..|..+++|++|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 4679999999999977778999999999999999999988888999999999999999986
No 41
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.84 E-value=4.1e-10 Score=122.01 Aligned_cols=35 Identities=37% Similarity=0.520 Sum_probs=15.6
Q ss_pred CcEEEccCCcceeecCcccccCCCCCEEeCCCCccc
Q 042537 650 LVALNLSRNNLTGQITPKIDQLKSLDFLDLSQNQFV 685 (789)
Q Consensus 650 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 685 (789)
|+.+++++|++. .++..+..+..++.||+++|++.
T Consensus 234 L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~ 268 (414)
T KOG0531|consen 234 LRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRIS 268 (414)
T ss_pred HHHHhcccCccc-cccccccccccccccchhhcccc
Confidence 444444444444 22233444444444444444444
No 42
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.61 E-value=2.1e-08 Score=115.92 Aligned_cols=252 Identities=26% Similarity=0.281 Sum_probs=131.5
Q ss_pred CCCEEeCCCCC--CCCCCCcccccCCCCCCEEecCCCcCCCCCCccccCCCCCcEEeccCccCCCCcchHHhhCCCCCCC
Q 042537 76 HLRHLDLSEND--FSGSRIPEFIGSLNKLRYLSLSSAEFEGPIPSQLGNLSRLKYLDLSYINLNKSRDWLRIIDKLPSLR 153 (789)
Q Consensus 76 ~L~~L~Ls~n~--i~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~ 153 (789)
.|++|-+..|. +..+ ..++|..++.|++|||++|.--+.+|..+++|.+||+|++++..+.. +|..++++.+|.
T Consensus 546 ~L~tLll~~n~~~l~~i-s~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~---LP~~l~~Lk~L~ 621 (889)
T KOG4658|consen 546 KLRTLLLQRNSDWLLEI-SGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISH---LPSGLGNLKKLI 621 (889)
T ss_pred ccceEEEeecchhhhhc-CHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccc---cchHHHHHHhhh
Confidence 57777777764 3322 34456677778888887776555777777777788877777777665 677777777777
Q ss_pred EEEcCCCCCCCCccccccccccCCCCCCeEEccCCCCC--CCchhHHHhhcCCCcEEEccCCCCcccCchhhhcCCCCcE
Q 042537 154 TLNLEHCHLPPIIPSDLLHLNFSTSSLGALYLFENSLS--SSIYPWLFNISSKLVVLDLDSNLLQGSLLEPFDRMVSLRT 231 (789)
Q Consensus 154 ~L~L~~n~l~~~~~~~~~~~~l~~~~L~~L~l~~n~l~--~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 231 (789)
+|++..+.-...++... ..+ .+|++|.+...... ......+..+ .+|+.+....... .+...+..+..|+.
T Consensus 622 ~Lnl~~~~~l~~~~~i~--~~L--~~Lr~L~l~~s~~~~~~~~l~el~~L-e~L~~ls~~~~s~--~~~e~l~~~~~L~~ 694 (889)
T KOG4658|consen 622 YLNLEVTGRLESIPGIL--LEL--QSLRVLRLPRSALSNDKLLLKELENL-EHLENLSITISSV--LLLEDLLGMTRLRS 694 (889)
T ss_pred eeccccccccccccchh--hhc--ccccEEEeeccccccchhhHHhhhcc-cchhhheeecchh--HhHhhhhhhHHHHH
Confidence 77777765444444222 223 67777777655421 1122222211 2344444322222 11112233333332
Q ss_pred EECCCCCccEEecCCCcCcccchhhhhCCCCCCEEEccCCCCCCccChhhhhc------CCCCcEEEccCCcccccccCC
Q 042537 232 LYLGFNELEELFLGKNRLNGTINQWLSRMYKLDALSLSGNSLTGVVTESVFSE------LSNLKALHLDDNSFTLKFSHD 305 (789)
Q Consensus 232 L~L~~n~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~------l~~L~~L~L~~n~i~~~~~~~ 305 (789)
+... +.+..+.. ...+..+..+.+|+.|.+.++.+... ....+.. ++++..+...++.. .....
T Consensus 695 ~~~~------l~~~~~~~-~~~~~~~~~l~~L~~L~i~~~~~~e~-~~~~~~~~~~~~~f~~l~~~~~~~~~~--~r~l~ 764 (889)
T KOG4658|consen 695 LLQS------LSIEGCSK-RTLISSLGSLGNLEELSILDCGISEI-VIEWEESLIVLLCFPNLSKVSILNCHM--LRDLT 764 (889)
T ss_pred HhHh------hhhccccc-ceeecccccccCcceEEEEcCCCchh-hcccccccchhhhHHHHHHHHhhcccc--ccccc
Confidence 2111 00001111 12234466677888888888777521 1101110 22222222222211 11122
Q ss_pred C-CCcccceeEeccCccCCCCCchhccCCCCccEEEccCCcCCC
Q 042537 306 W-IPPFQLIIILLGSCQMGPHFPKWLQTQNQIEVLDISDAGISD 348 (789)
Q Consensus 306 ~-~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~n~i~~ 348 (789)
| .-.++|+.|.+..|.....+.+....+..++.+.+..+.+.+
T Consensus 765 ~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~ 808 (889)
T KOG4658|consen 765 WLLFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLEG 808 (889)
T ss_pred hhhccCcccEEEEecccccccCCCHHHHhhhcccEEeccccccc
Confidence 2 235688888888887776666666666666665555555543
No 43
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.57 E-value=2.4e-09 Score=102.25 Aligned_cols=87 Identities=29% Similarity=0.434 Sum_probs=48.4
Q ss_pred CCCEEeCCCCCCCCCCCcccccCCCCCCEEecCCCcCCCCCCccccCCCCCcEEeccCcc-CCCCcchHHhhCCCCCCCE
Q 042537 76 HLRHLDLSENDFSGSRIPEFIGSLNKLRYLSLSSAEFEGPIPSQLGNLSRLKYLDLSYIN-LNKSRDWLRIIDKLPSLRT 154 (789)
Q Consensus 76 ~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~l~~l~~L~~ 154 (789)
+|++||||+..|+...+...+..|.+|+.|.|.++++.+.+...+.+-.+|+.|+++.+. ++.. .+.-.+..++.|..
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n-~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTEN-ALQLLLSSCSRLDE 264 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchh-HHHHHHHhhhhHhh
Confidence 366666666665543344445566666666666666665555556666666666666542 2221 12234555666666
Q ss_pred EEcCCCCCC
Q 042537 155 LNLEHCHLP 163 (789)
Q Consensus 155 L~L~~n~l~ 163 (789)
|+++.|.+.
T Consensus 265 LNlsWc~l~ 273 (419)
T KOG2120|consen 265 LNLSWCFLF 273 (419)
T ss_pred cCchHhhcc
Confidence 666666543
No 44
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.51 E-value=1.6e-09 Score=115.31 Aligned_cols=80 Identities=40% Similarity=0.397 Sum_probs=40.8
Q ss_pred eEEEcccCccccccch-hhhccccCcEEEccCCcceeecCcccccCCCCCEEeCCCCcccccCc-hhhhcCCCCCeEecc
Q 042537 627 KILDFSMNKLSGTIPE-EIMDLVGLVALNLSRNNLTGQITPKIDQLKSLDFLDLSQNQFVGGIP-SSLCQLSRLSVMNLS 704 (789)
Q Consensus 627 ~~L~Ls~N~l~~~~p~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~L~ls 704 (789)
+.|||++|.+. .+|. ....+. |..|+|++|.++. -..+.++.+|+.||+++|-|.+--. .-+..|..|+.|+|.
T Consensus 212 khLDlsyN~L~-~vp~l~~~gc~-L~~L~lrnN~l~t--L~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~Le 287 (1096)
T KOG1859|consen 212 KHLDLSYNCLR-HVPQLSMVGCK-LQLLNLRNNALTT--LRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLE 287 (1096)
T ss_pred cccccccchhc-cccccchhhhh-heeeeecccHHHh--hhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhc
Confidence 55555555555 3332 111222 6666666666652 2335566666666666666543211 223445566666666
Q ss_pred CCcccc
Q 042537 705 YNNLSG 710 (789)
Q Consensus 705 ~N~l~~ 710 (789)
+|++.+
T Consensus 288 GNPl~c 293 (1096)
T KOG1859|consen 288 GNPLCC 293 (1096)
T ss_pred CCcccc
Confidence 666653
No 45
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.49 E-value=8.5e-09 Score=109.93 Aligned_cols=107 Identities=29% Similarity=0.359 Sum_probs=83.1
Q ss_pred cCceeEEEcccCccccccchhhhccccCcEEEccCCcceeecCc-ccccCCCCCEEeCCCCcccccCchhhhcCCCCCeE
Q 042537 623 LGLVKILDFSMNKLSGTIPEEIMDLVGLVALNLSRNNLTGQITP-KIDQLKSLDFLDLSQNQFVGGIPSSLCQLSRLSVM 701 (789)
Q Consensus 623 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L 701 (789)
++.++.||||+|+++.. +.+..++.|+.|||++|.++ .+|. ..... .|+.|.+++|.++.. ..+.+|.+|+.|
T Consensus 186 l~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc-~L~~L~lrnN~l~tL--~gie~LksL~~L 259 (1096)
T KOG1859|consen 186 LPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGC-KLQLLNLRNNALTTL--RGIENLKSLYGL 259 (1096)
T ss_pred HHHhhhhccchhhhhhh--HHHHhcccccccccccchhc-cccccchhhh-hheeeeecccHHHhh--hhHHhhhhhhcc
Confidence 45569999999999854 37889999999999999998 4443 23343 499999999999854 568899999999
Q ss_pred eccCCcccccCCCC--CccccccccccCCCCCCCCC
Q 042537 702 NLSYNNLSGKIPLG--TQLQSFNASVYAGNPELCGL 735 (789)
Q Consensus 702 ~ls~N~l~~~~p~~--~~~~~~~~~~~~~n~~lc~~ 735 (789)
|+++|-+++--... ..+..+....++|||.-|.+
T Consensus 260 DlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~p 295 (1096)
T KOG1859|consen 260 DLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCAP 295 (1096)
T ss_pred chhHhhhhcchhhhHHHHHHHHHHHhhcCCccccCH
Confidence 99999887642221 23445566778999998864
No 46
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.42 E-value=1.1e-08 Score=86.34 Aligned_cols=57 Identities=33% Similarity=0.447 Sum_probs=29.9
Q ss_pred eEEEcccCccccccchhhhccccCcEEEccCCcceeecCcccccCCCCCEEeCCCCccc
Q 042537 627 KILDFSMNKLSGTIPEEIMDLVGLVALNLSRNNLTGQITPKIDQLKSLDFLDLSQNQFV 685 (789)
Q Consensus 627 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 685 (789)
+.|++++|.|+ .+|.++..++.|+.|+++.|.+. ..|..+..+.++-.||..+|.+.
T Consensus 80 t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~ 136 (177)
T KOG4579|consen 80 TTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA 136 (177)
T ss_pred hhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCccc
Confidence 44555555555 44555555555555555555554 34444444555555555555554
No 47
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.40 E-value=3.1e-07 Score=106.43 Aligned_cols=102 Identities=22% Similarity=0.164 Sum_probs=44.2
Q ss_pred CcEEEccCCC--CcccCchhhhcCCCCcEEECCCCCccEEecCCCcCcccchhhhhCCCCCCEEEccCCCCCCccChhhh
Q 042537 205 LVVLDLDSNL--LQGSLLEPFDRMVSLRTLYLGFNELEELFLGKNRLNGTINQWLSRMYKLDALSLSGNSLTGVVTESVF 282 (789)
Q Consensus 205 L~~L~Ls~n~--i~~~~~~~~~~l~~L~~L~L~~n~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~ 282 (789)
|+.|-+..|. +..+..+.|..++.|+.|||+ +|.=.+.+|..++.+-+|++|++++..+. .+|. .+
T Consensus 547 L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs----------~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~-~l 614 (889)
T KOG4658|consen 547 LRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLS----------GNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPS-GL 614 (889)
T ss_pred cceEEEeecchhhhhcCHHHHhhCcceEEEECC----------CCCccCcCChHHhhhhhhhcccccCCCcc-ccch-HH
Confidence 4444444443 333333334444445544444 23223334444455555555555555444 4444 24
Q ss_pred hcCCCCcEEEccCCcccccccCCCCCcccceeEecc
Q 042537 283 SELSNLKALHLDDNSFTLKFSHDWIPPFQLIIILLG 318 (789)
Q Consensus 283 ~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~ 318 (789)
.+++.|.+|++..+.-....+.....+.+|++|.+.
T Consensus 615 ~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~ 650 (889)
T KOG4658|consen 615 GNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLP 650 (889)
T ss_pred HHHHhhheeccccccccccccchhhhcccccEEEee
Confidence 455555555554443332222333334444444443
No 48
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.32 E-value=4.3e-08 Score=93.86 Aligned_cols=41 Identities=34% Similarity=0.382 Sum_probs=20.4
Q ss_pred CCcEEeccCccCCCCcchHHhhCCCCCCCEEEcCCCCCCCCc
Q 042537 125 RLKYLDLSYINLNKSRDWLRIIDKLPSLRTLNLEHCHLPPII 166 (789)
Q Consensus 125 ~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~ 166 (789)
.||+||||...|+.. .+-..+..+.+|+.|.+.++++...+
T Consensus 186 Rlq~lDLS~s~it~s-tl~~iLs~C~kLk~lSlEg~~LdD~I 226 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVS-TLHGILSQCSKLKNLSLEGLRLDDPI 226 (419)
T ss_pred hhHHhhcchhheeHH-HHHHHHHHHHhhhhccccccccCcHH
Confidence 355566655555432 23334455555555555555554433
No 49
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.21 E-value=1e-06 Score=84.66 Aligned_cols=88 Identities=27% Similarity=0.261 Sum_probs=50.0
Q ss_pred CCCCCcEEeccCccCCCCcchHHhhCCCCCCCEEEcCCCCCCCCccccccccccCCCCCCeEEccCCCCCCCchhHHHhh
Q 042537 122 NLSRLKYLDLSYINLNKSRDWLRIIDKLPSLRTLNLEHCHLPPIIPSDLLHLNFSTSSLGALYLFENSLSSSIYPWLFNI 201 (789)
Q Consensus 122 ~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~~ 201 (789)
..+.++.|||.+|.|+...++...+.++|.|++|+++.|++...+.... ... .+|+.|-|.+..+.-.-...+..-
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp--~p~--~nl~~lVLNgT~L~w~~~~s~l~~ 144 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLP--LPL--KNLRVLVLNGTGLSWTQSTSSLDD 144 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCc--ccc--cceEEEEEcCCCCChhhhhhhhhc
Confidence 3556677777777777655555666777777777777777665443110 122 566666666555543333333333
Q ss_pred cCCCcEEEccCC
Q 042537 202 SSKLVVLDLDSN 213 (789)
Q Consensus 202 ~~~L~~L~Ls~n 213 (789)
.|.++.|.++.|
T Consensus 145 lP~vtelHmS~N 156 (418)
T KOG2982|consen 145 LPKVTELHMSDN 156 (418)
T ss_pred chhhhhhhhccc
Confidence 345555555555
No 50
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.19 E-value=6.3e-07 Score=84.88 Aligned_cols=93 Identities=24% Similarity=0.267 Sum_probs=55.2
Q ss_pred cccCCCCCCEEeCCCCCCCCC---CCcccccCCCCCCEEecCCCcC---CCCCC-------ccccCCCCCcEEeccCccC
Q 042537 70 SLLKLYHLRHLDLSENDFSGS---RIPEFIGSLNKLRYLSLSSAEF---EGPIP-------SQLGNLSRLKYLDLSYINL 136 (789)
Q Consensus 70 ~~~~l~~L~~L~Ls~n~i~~~---~~~~~~~~l~~L~~L~Ls~n~i---~~~~p-------~~~~~l~~L~~L~Ls~n~l 136 (789)
.+..+..++.+|||+|.|... .+...+.+-++|+..++|.--. ...++ .++-++++|+..+||.|.+
T Consensus 25 el~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAf 104 (388)
T COG5238 25 ELEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAF 104 (388)
T ss_pred HHHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeecccccc
Confidence 345577888899999888643 1233455667788877775321 11222 2345667777777777765
Q ss_pred CCC--cchHHhhCCCCCCCEEEcCCCCC
Q 042537 137 NKS--RDWLRIIDKLPSLRTLNLEHCHL 162 (789)
Q Consensus 137 ~~~--~~~~~~l~~l~~L~~L~L~~n~l 162 (789)
..- +.+-+.+++-+.|++|.+++|.+
T Consensus 105 g~~~~e~L~d~is~~t~l~HL~l~NnGl 132 (388)
T COG5238 105 GSEFPEELGDLISSSTDLVHLKLNNNGL 132 (388)
T ss_pred CcccchHHHHHHhcCCCceeEEeecCCC
Confidence 431 22334556666677777766654
No 51
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.13 E-value=4.4e-07 Score=87.07 Aligned_cols=215 Identities=18% Similarity=0.145 Sum_probs=128.5
Q ss_pred CCCcEEeccCccCCCCcchHHhhCCCCCCCEEEcCCCCCCCCccccccccccCCCCCCeEEccCCCCCCCchhHHHhhcC
Q 042537 124 SRLKYLDLSYINLNKSRDWLRIIDKLPSLRTLNLEHCHLPPIIPSDLLHLNFSTSSLGALYLFENSLSSSIYPWLFNISS 203 (789)
Q Consensus 124 ~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~ 203 (789)
.-++.|-+.++.|....+.-..-...+.++.+||.+|.|+....-.....++ +.|+.|+++.|.+...|...-... .
T Consensus 45 ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~l--P~l~~LNls~N~L~s~I~~lp~p~-~ 121 (418)
T KOG2982|consen 45 RALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQL--PALTTLNLSCNSLSSDIKSLPLPL-K 121 (418)
T ss_pred cchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcC--ccceEeeccCCcCCCccccCcccc-c
Confidence 3455566666666655443333356789999999999987543322233445 999999999999876543321122 3
Q ss_pred CCcEEEccCCCCccc-CchhhhcCCCCcEEECCCCCccEEecCCCcCcccchhhhhCCCCCCEEEccCCCCCCccCh-hh
Q 042537 204 KLVVLDLDSNLLQGS-LLEPFDRMVSLRTLYLGFNELEELFLGKNRLNGTINQWLSRMYKLDALSLSGNSLTGVVTE-SV 281 (789)
Q Consensus 204 ~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~L~~n~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~-~~ 281 (789)
+|++|-|.+..+.-. ....+..++.++.|.++.|.++.+.+..+.+....+. +++|.+..|........ ..
T Consensus 122 nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~-------v~tlh~~~c~~~~w~~~~~l 194 (418)
T KOG2982|consen 122 NLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTE-------VLTLHQLPCLEQLWLNKNKL 194 (418)
T ss_pred ceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchh-------hhhhhcCCcHHHHHHHHHhH
Confidence 899999988876522 2334677899999999999999998888876654332 33333333322100000 01
Q ss_pred hhcCCCCcEEEccCCcccccc-cCCCCCcccceeEeccCccCCCC-CchhccCCCCccEEEccCCcCCC
Q 042537 282 FSELSNLKALHLDDNSFTLKF-SHDWIPPFQLIIILLGSCQMGPH-FPKWLQTQNQIEVLDISDAGISD 348 (789)
Q Consensus 282 ~~~l~~L~~L~L~~n~i~~~~-~~~~~~~~~L~~L~l~~~~~~~~-~~~~l~~l~~L~~L~ls~n~i~~ 348 (789)
-.-+|++..+.+..|++.... ...+.+.+.+.-|+++.+++..- .-+.+.++++|..|.++++.+.+
T Consensus 195 ~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d 263 (418)
T KOG2982|consen 195 SRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSD 263 (418)
T ss_pred HhhcccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccc
Confidence 223567777777777775432 23344445555566666555431 12345566666666666665543
No 52
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.12 E-value=2e-07 Score=78.93 Aligned_cols=86 Identities=19% Similarity=0.356 Sum_probs=72.7
Q ss_pred eeEEEcccCccccccchhhh-ccccCcEEEccCCcceeecCcccccCCCCCEEeCCCCcccccCchhhhcCCCCCeEecc
Q 042537 626 VKILDFSMNKLSGTIPEEIM-DLVGLVALNLSRNNLTGQITPKIDQLKSLDFLDLSQNQFVGGIPSSLCQLSRLSVMNLS 704 (789)
Q Consensus 626 L~~L~Ls~N~l~~~~p~~~~-~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls 704 (789)
|+..+|++|.+. ..|+.|. ..+.++.|+|++|.|+ .+|.++..++.|+.|+++.|.+. ..|..+..|.+|-.||..
T Consensus 55 l~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~ 131 (177)
T KOG4579|consen 55 LTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSP 131 (177)
T ss_pred EEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCC
Confidence 477899999998 5555555 4568999999999999 78888999999999999999998 667788889999999999
Q ss_pred CCcccccCCCC
Q 042537 705 YNNLSGKIPLG 715 (789)
Q Consensus 705 ~N~l~~~~p~~ 715 (789)
+|.+. +||..
T Consensus 132 ~na~~-eid~d 141 (177)
T KOG4579|consen 132 ENARA-EIDVD 141 (177)
T ss_pred CCccc-cCcHH
Confidence 99875 66654
No 53
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.09 E-value=9.6e-07 Score=83.66 Aligned_cols=119 Identities=14% Similarity=0.160 Sum_probs=77.5
Q ss_pred CCcEEEEEcCCCCCCCCcccccCccccCCCCCCEEeCCCCCCCCC--CC-------cccccCCCCCCEEecCCCcCCCCC
Q 042537 46 TGHVIVLDLQVLVHSEPLKGTISPSLLKLYHLRHLDLSENDFSGS--RI-------PEFIGSLNKLRYLSLSSAEFEGPI 116 (789)
Q Consensus 46 ~~~v~~l~L~~~~~~~~l~~~l~~~~~~l~~L~~L~Ls~n~i~~~--~~-------~~~~~~l~~L~~L~Ls~n~i~~~~ 116 (789)
...++.+|||++..+..-...+...+.+-++|+..++|.-..... .+ ...+.+|++|+..+||.|.|....
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~ 108 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF 108 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence 346789999994333333334556777888999998886432110 12 234667899999999999887655
Q ss_pred Ccc----ccCCCCCcEEeccCccCCCCc--chHH---------hhCCCCCCCEEEcCCCCCCC
Q 042537 117 PSQ----LGNLSRLKYLDLSYINLNKSR--DWLR---------IIDKLPSLRTLNLEHCHLPP 164 (789)
Q Consensus 117 p~~----~~~l~~L~~L~Ls~n~l~~~~--~~~~---------~l~~l~~L~~L~L~~n~l~~ 164 (789)
|.. +++-+.|++|.|++|.+..+. .+.. ...+-|.|++.....|++..
T Consensus 109 ~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlen 171 (388)
T COG5238 109 PEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLEN 171 (388)
T ss_pred chHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhcc
Confidence 543 567789999999999876541 1211 12344677777777776643
No 54
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.03 E-value=4.8e-06 Score=57.21 Aligned_cols=37 Identities=32% Similarity=0.504 Sum_probs=18.0
Q ss_pred CCCEEecCCCcCCCCCCccccCCCCCcEEeccCccCCC
Q 042537 101 KLRYLSLSSAEFEGPIPSQLGNLSRLKYLDLSYINLNK 138 (789)
Q Consensus 101 ~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~ 138 (789)
+|++|++++|+|+ .+|..+++|++|++|++++|++++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCSB
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCCC
Confidence 4555555555555 334345555555555555555544
No 55
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.95 E-value=6.8e-06 Score=56.46 Aligned_cols=17 Identities=35% Similarity=0.598 Sum_probs=6.6
Q ss_pred cccCCCCCEEeCCCCcc
Q 042537 668 IDQLKSLDFLDLSQNQF 684 (789)
Q Consensus 668 ~~~l~~L~~L~Ls~N~l 684 (789)
++++++|+.|++++|++
T Consensus 20 l~~l~~L~~L~l~~N~i 36 (44)
T PF12799_consen 20 LSNLPNLETLNLSNNPI 36 (44)
T ss_dssp GTTCTTSSEEEETSSCC
T ss_pred HhCCCCCCEEEecCCCC
Confidence 33333333333333333
No 56
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.83 E-value=4.1e-05 Score=79.64 Aligned_cols=76 Identities=13% Similarity=0.152 Sum_probs=51.9
Q ss_pred ccccCcccEEEccCCeeeeeCCcCccCCCCCcEEeCCCCcccccCchhhhhcCCCCcEEEcCCC-cccccCCCCccCCCc
Q 042537 474 MGFLHSIQTLSLYNNSLIGELPSFFKSCSQLILMDLGKNGLSGEIPTWIGEGLPKLVVLSLKSN-KFHGNIPFQVCQLSY 552 (789)
Q Consensus 474 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~ 552 (789)
+..+..++.|++++|.++ .+|. -..+|++|.+++|.-...+|..+. ++|+.|++++| .+. .+| .+
T Consensus 48 ~~~~~~l~~L~Is~c~L~-sLP~---LP~sLtsL~Lsnc~nLtsLP~~LP---~nLe~L~Ls~Cs~L~-sLP------~s 113 (426)
T PRK15386 48 IEEARASGRLYIKDCDIE-SLPV---LPNELTEITIENCNNLTTLPGSIP---EGLEKLTVCHCPEIS-GLP------ES 113 (426)
T ss_pred HHHhcCCCEEEeCCCCCc-ccCC---CCCCCcEEEccCCCCcccCCchhh---hhhhheEccCccccc-ccc------cc
Confidence 444678999999999877 4452 234799999988544347776543 58899999988 444 344 34
Q ss_pred CceEeccCCcc
Q 042537 553 IQILDLSLNNI 563 (789)
Q Consensus 553 L~~L~Ls~N~l 563 (789)
|+.|+++++..
T Consensus 114 Le~L~L~~n~~ 124 (426)
T PRK15386 114 VRSLEIKGSAT 124 (426)
T ss_pred cceEEeCCCCC
Confidence 77777776554
No 57
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.71 E-value=0.00012 Score=76.10 Aligned_cols=144 Identities=17% Similarity=0.209 Sum_probs=88.7
Q ss_pred cccCCCCCCEEeCCCCCCCCCCCcccccCCCCCCEEecCCCcCCCCCCccccCCCCCcEEeccCc-cCCCCcchHHhhCC
Q 042537 70 SLLKLYHLRHLDLSENDFSGSRIPEFIGSLNKLRYLSLSSAEFEGPIPSQLGNLSRLKYLDLSYI-NLNKSRDWLRIIDK 148 (789)
Q Consensus 70 ~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~l~~ 148 (789)
.+..+.+++.|++++|.++ .+|. + ..+|++|+++++.--..+|+.+. .+|++|++++| .+.. +|
T Consensus 47 r~~~~~~l~~L~Is~c~L~--sLP~-L--P~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~s---LP----- 111 (426)
T PRK15386 47 QIEEARASGRLYIKDCDIE--SLPV-L--PNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISG---LP----- 111 (426)
T ss_pred HHHHhcCCCEEEeCCCCCc--ccCC-C--CCCCcEEEccCCCCcccCCchhh--hhhhheEccCcccccc---cc-----
Confidence 3555688999999999887 4562 2 34699999988543336676553 58999999988 5443 33
Q ss_pred CCCCCEEEcCCCCCCC--CccccccccccCCCCCCeEEccCCCCC--CCchhHHHhhcCCCcEEEccCCCCcccCchhhh
Q 042537 149 LPSLRTLNLEHCHLPP--IIPSDLLHLNFSTSSLGALYLFENSLS--SSIYPWLFNISSKLVVLDLDSNLLQGSLLEPFD 224 (789)
Q Consensus 149 l~~L~~L~L~~n~l~~--~~~~~~~~~~l~~~~L~~L~l~~n~l~--~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~ 224 (789)
..|+.|+++++.... ..| ++|+.|.+.+++.. ..++ ..+++.|++|++++|... ..|..+.
T Consensus 112 -~sLe~L~L~~n~~~~L~~LP----------ssLk~L~I~~~n~~~~~~lp---~~LPsSLk~L~Is~c~~i-~LP~~LP 176 (426)
T PRK15386 112 -ESVRSLEIKGSATDSIKNVP----------NGLTSLSINSYNPENQARID---NLISPSLKTLSLTGCSNI-ILPEKLP 176 (426)
T ss_pred -cccceEEeCCCCCcccccCc----------chHhheeccccccccccccc---cccCCcccEEEecCCCcc-cCccccc
Confidence 357777777665432 223 57777777543211 1111 123357888888888755 2333332
Q ss_pred cCCCCcEEECCCCCccEEecC
Q 042537 225 RMVSLRTLYLGFNELEELFLG 245 (789)
Q Consensus 225 ~l~~L~~L~L~~n~L~~L~L~ 245 (789)
.+|+.|.++.+..+.+.+.
T Consensus 177 --~SLk~L~ls~n~~~sLeI~ 195 (426)
T PRK15386 177 --ESLQSITLHIEQKTTWNIS 195 (426)
T ss_pred --ccCcEEEecccccccccCc
Confidence 4778888876554444443
No 58
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.66 E-value=8.9e-05 Score=67.75 Aligned_cols=103 Identities=21% Similarity=0.271 Sum_probs=65.3
Q ss_pred CCcEEEcCCCcCcccCCccccccCcccEEEccCCeeeeeCCcCccCCCCCcEEeCCCCcccccCch--hhhhcCCCCcEE
Q 042537 455 RLAVLSLANNFFSGKIPKSMGFLHSIQTLSLYNNSLIGELPSFFKSCSQLILMDLGKNGLSGEIPT--WIGEGLPKLVVL 532 (789)
Q Consensus 455 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~--~~~~~l~~L~~L 532 (789)
+...+||++|.+... ..|..++.|.+|.+++|+|+.+.|..-.-+++|..|.+.+|.|. .+.+ .+. .+|+|++|
T Consensus 43 ~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~-~l~dl~pLa-~~p~L~~L 118 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQ-ELGDLDPLA-SCPKLEYL 118 (233)
T ss_pred ccceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchh-hhhhcchhc-cCCcccee
Confidence 455666666666532 34666677777777777777666655555666777777777665 3221 122 47788888
Q ss_pred EcCCCcccccCC---CCccCCCcCceEeccCC
Q 042537 533 SLKSNKFHGNIP---FQVCQLSYIQILDLSLN 561 (789)
Q Consensus 533 ~L~~n~l~~~~~---~~~~~l~~L~~L~Ls~N 561 (789)
.+-+|++...-. ..+..+++|+.||.+.=
T Consensus 119 tll~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 119 TLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred eecCCchhcccCceeEEEEecCcceEeehhhh
Confidence 888887763321 13567888888888764
No 59
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.54 E-value=4.4e-06 Score=84.36 Aligned_cols=14 Identities=36% Similarity=0.639 Sum_probs=7.2
Q ss_pred CCCCCCCEEEcCCC
Q 042537 147 DKLPSLRTLNLEHC 160 (789)
Q Consensus 147 ~~l~~L~~L~L~~n 160 (789)
..+++|++|+++.|
T Consensus 213 ~gC~kL~~lNlSwc 226 (483)
T KOG4341|consen 213 EGCRKLKYLNLSWC 226 (483)
T ss_pred HhhhhHHHhhhccC
Confidence 34555555555554
No 60
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.52 E-value=3.2e-05 Score=87.69 Aligned_cols=87 Identities=23% Similarity=0.342 Sum_probs=51.8
Q ss_pred cCCCCCCEEeCCCCCCCCCCCcccccCCCCCCEEecCCCcCCCCCCccccCCCCCcEEeccCccCCCCcchHHhhCCCCC
Q 042537 72 LKLYHLRHLDLSENDFSGSRIPEFIGSLNKLRYLSLSSAEFEGPIPSQLGNLSRLKYLDLSYINLNKSRDWLRIIDKLPS 151 (789)
Q Consensus 72 ~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~ 151 (789)
..||+|+.|.+++-.+....+-....++++|+.||+|+..++.. ..+++|++||+|.+.+-.+..-.++ ..+-+|++
T Consensus 145 ~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l-~~LF~L~~ 221 (699)
T KOG3665|consen 145 TMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDL-IDLFNLKK 221 (699)
T ss_pred hhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhH-HHHhcccC
Confidence 35667777777665554332334445667777777777766633 5566677777776666555543222 34445667
Q ss_pred CCEEEcCCCC
Q 042537 152 LRTLNLEHCH 161 (789)
Q Consensus 152 L~~L~L~~n~ 161 (789)
|++||+|...
T Consensus 222 L~vLDIS~~~ 231 (699)
T KOG3665|consen 222 LRVLDISRDK 231 (699)
T ss_pred CCeeeccccc
Confidence 7777766654
No 61
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.52 E-value=0.00016 Score=66.06 Aligned_cols=111 Identities=20% Similarity=0.178 Sum_probs=65.6
Q ss_pred CCcEEEccCCCCcccCchhhhcCCCCcEEECCCCCccEEecCCCcCcccchhhhhCCCCCCEEEccCCCCCCccChhhhh
Q 042537 204 KLVVLDLDSNLLQGSLLEPFDRMVSLRTLYLGFNELEELFLGKNRLNGTINQWLSRMYKLDALSLSGNSLTGVVTESVFS 283 (789)
Q Consensus 204 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~ 283 (789)
....+||++|.+... ..|..++.|.+|.+++|+|+.+ .|.--.-+++|..|.|.+|.|.....-.-+.
T Consensus 43 ~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I----------~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa 110 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRI----------DPDLDTFLPNLKTLILTNNSIQELGDLDPLA 110 (233)
T ss_pred ccceecccccchhhc--ccCCCccccceEEecCCcceee----------ccchhhhccccceEEecCcchhhhhhcchhc
Confidence 556677777776532 3566677777777774444433 3333334566777777777776322222366
Q ss_pred cCCCCcEEEccCCcccccccCCCCCcccceeEeccCccCCCCCchhccCCCCccEEEccCCcCC
Q 042537 284 ELSNLKALHLDDNSFTLKFSHDWIPPFQLIIILLGSCQMGPHFPKWLQTQNQIEVLDISDAGIS 347 (789)
Q Consensus 284 ~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~n~i~ 347 (789)
.+|+|++|.+-+|+++.... --...+..+++|+.||+..-.-.
T Consensus 111 ~~p~L~~Ltll~Npv~~k~~---------------------YR~yvl~klp~l~~LDF~kVt~~ 153 (233)
T KOG1644|consen 111 SCPKLEYLTLLGNPVEHKKN---------------------YRLYVLYKLPSLRTLDFQKVTRK 153 (233)
T ss_pred cCCccceeeecCCchhcccC---------------------ceeEEEEecCcceEeehhhhhHH
Confidence 67777777777777653211 11123556788888888765544
No 62
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.50 E-value=0.00028 Score=62.72 Aligned_cols=121 Identities=16% Similarity=0.183 Sum_probs=43.1
Q ss_pred ccccCCCCcEEEcCCCcCcccCCccccccCcccEEEccCCeeeeeCCcCccCCCCCcEEeCCCCcccccCchhhhhcCCC
Q 042537 449 CWMQFDRLAVLSLANNFFSGKIPKSMGFLHSIQTLSLYNNSLIGELPSFFKSCSQLILMDLGKNGLSGEIPTWIGEGLPK 528 (789)
Q Consensus 449 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~l~~ 528 (789)
+|.++.+|+.+.+.. .+..+...+|..+++|+.+.+.++ +..+....|.++++++.+.+.+ .+. .++...+..+++
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~-~i~~~~F~~~~~ 82 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLK-SIGDNAFSNCTN 82 (129)
T ss_dssp TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT--EE-TTTTTT-TT
T ss_pred HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccc-cccccccccccc
Confidence 344444555555543 344344444555555555555443 4434444455555555555543 332 344444434555
Q ss_pred CcEEEcCCCcccccCCCCccCCCcCceEeccCCcccccCCcccccccc
Q 042537 529 LVVLSLKSNKFHGNIPFQVCQLSYIQILDLSLNNISGIIPKCLNNFTG 576 (789)
Q Consensus 529 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 576 (789)
|+.+++..+ +.......|.+. .|+.+.+.. .+..+...+|.++++
T Consensus 83 l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~ 127 (129)
T PF13306_consen 83 LKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTK 127 (129)
T ss_dssp ECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG----
T ss_pred ccccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCcccccccc
Confidence 555555443 333333444444 555555543 333333444444433
No 63
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.47 E-value=6.1e-05 Score=85.40 Aligned_cols=159 Identities=18% Similarity=0.264 Sum_probs=76.0
Q ss_pred CCCCEEecCCCcC-CCCCCcccc-CCCCCcEEeccCccCCCCcchHHhhCCCCCCCEEEcCCCCCCCCccccccccccCC
Q 042537 100 NKLRYLSLSSAEF-EGPIPSQLG-NLSRLKYLDLSYINLNKSRDWLRIIDKLPSLRTLNLEHCHLPPIIPSDLLHLNFST 177 (789)
Q Consensus 100 ~~L~~L~Ls~n~i-~~~~p~~~~-~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~ 177 (789)
.+|++||+++... ....|..++ .+|.|+.|.+++-.+... ++-....++|+|..||+|+++++.. ....++
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~-dF~~lc~sFpNL~sLDIS~TnI~nl----~GIS~L-- 194 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDND-DFSQLCASFPNLRSLDISGTNISNL----SGISRL-- 194 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecch-hHHHHhhccCccceeecCCCCccCc----HHHhcc--
Confidence 4566666666432 112222332 356666666665544432 2334455666666666666665543 122222
Q ss_pred CCCCeEEccCCCCCCCchhHHHhhcCCCcEEEccCCCCcc-cCchhhhcCCCCcEEECCCCCccEEecCCCcCcccchhh
Q 042537 178 SSLGALYLFENSLSSSIYPWLFNISSKLVVLDLDSNLLQG-SLLEPFDRMVSLRTLYLGFNELEELFLGKNRLNGTINQW 256 (789)
Q Consensus 178 ~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~i~~-~~~~~~~~l~~L~~L~L~~n~L~~L~L~~n~l~~~~~~~ 256 (789)
++|+.|.+ .+=.+.. ..-..+.+|++|+.||+|...-.. ...+....-+.
T Consensus 195 knLq~L~m-------------------------rnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~----~~~ii~qYlec 245 (699)
T KOG3665|consen 195 KNLQVLSM-------------------------RNLEFESYQDLIDLFNLKKLRVLDISRDKNND----DTKIIEQYLEC 245 (699)
T ss_pred ccHHHHhc-------------------------cCCCCCchhhHHHHhcccCCCeeecccccccc----chHHHHHHHHh
Confidence 44444443 3333321 111234456666666665332110 00010011111
Q ss_pred hhCCCCCCEEEccCCCCCCccChhhhhcCCCCcEEEcc
Q 042537 257 LSRMYKLDALSLSGNSLTGVVTESVFSELSNLKALHLD 294 (789)
Q Consensus 257 l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~ 294 (789)
-..+|+|+.||.|++.+.+.+-...+..-++|+.+..-
T Consensus 246 ~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~i~~~ 283 (699)
T KOG3665|consen 246 GMVLPELRFLDCSGTDINEEILEELLNSHPNLQQIAAL 283 (699)
T ss_pred cccCccccEEecCCcchhHHHHHHHHHhCccHhhhhhh
Confidence 23477888888888877765555445555666655543
No 64
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.40 E-value=0.00046 Score=61.34 Aligned_cols=118 Identities=15% Similarity=0.196 Sum_probs=67.3
Q ss_pred CCCCEEEcCCCccccCCCcccccCCCCcEEEcCCCcCcccCCccccccCcccEEEccCCeeeeeCCcCccCCCCCcEEeC
Q 042537 430 HKLEFLDLSNNILSGRLPDCWMQFDRLAVLSLANNFFSGKIPKSMGFLHSIQTLSLYNNSLIGELPSFFKSCSQLILMDL 509 (789)
Q Consensus 430 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 509 (789)
++|+.+.+.. .+......+|.++++|+.+.+.++ +......+|..+++++.+.+.+ .+.......|..+++++.+++
T Consensus 12 ~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~ 88 (129)
T PF13306_consen 12 SNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDI 88 (129)
T ss_dssp TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEE
T ss_pred CCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccccccccc
Confidence 5788888875 566566778888888999998875 6666667888888899999876 445466677888899999998
Q ss_pred CCCcccccCchhhhhcCCCCcEEEcCCCcccccCCCCccCCCcCc
Q 042537 510 GKNGLSGEIPTWIGEGLPKLVVLSLKSNKFHGNIPFQVCQLSYIQ 554 (789)
Q Consensus 510 s~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 554 (789)
..+ +. .++...+.+. +|+.+.+.. .+..+....|.++++|+
T Consensus 89 ~~~-~~-~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l~ 129 (129)
T PF13306_consen 89 PSN-IT-EIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKLK 129 (129)
T ss_dssp TTT--B-EEHTTTTTT--T--EEE-TT-B-SS----GGG------
T ss_pred Ccc-cc-EEchhhhcCC-CceEEEECC-CccEECCccccccccCC
Confidence 775 55 6777777665 888888876 44445556676666653
No 65
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.38 E-value=0.00013 Score=69.87 Aligned_cols=95 Identities=22% Similarity=0.298 Sum_probs=57.5
Q ss_pred cccCccccCCCCCCEEeCCCCCCCCCCCcccccCCCCCCEEecCCC--cCCCCCCccccCCCCCcEEeccCccCCCCcch
Q 042537 65 GTISPSLLKLYHLRHLDLSENDFSGSRIPEFIGSLNKLRYLSLSSA--EFEGPIPSQLGNLSRLKYLDLSYINLNKSRDW 142 (789)
Q Consensus 65 ~~l~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n--~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~ 142 (789)
|.+....-.+..|+.|++.+..++.. ..+..+++|+.|.+|.| ++.+-++--..++++|++|++++|+++.+..+
T Consensus 33 g~~~gl~d~~~~le~ls~~n~gltt~---~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl 109 (260)
T KOG2739|consen 33 GKLGGLTDEFVELELLSVINVGLTTL---TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTL 109 (260)
T ss_pred CCcccccccccchhhhhhhccceeec---ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccccccc
Confidence 33444455566666666666666532 23456777788888877 55544444445567777777777777654332
Q ss_pred HHhhCCCCCCCEEEcCCCCCC
Q 042537 143 LRIIDKLPSLRTLNLEHCHLP 163 (789)
Q Consensus 143 ~~~l~~l~~L~~L~L~~n~l~ 163 (789)
..+..+.+|..|++..|..+
T Consensus 110 -~pl~~l~nL~~Ldl~n~~~~ 129 (260)
T KOG2739|consen 110 -RPLKELENLKSLDLFNCSVT 129 (260)
T ss_pred -chhhhhcchhhhhcccCCcc
Confidence 34455666666666666543
No 66
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=96.89 E-value=0.00024 Score=72.18 Aligned_cols=139 Identities=14% Similarity=0.007 Sum_probs=72.8
Q ss_pred CCCCCCEEEccCCCCCCccCh-hhhhcCCCCcEEEccCCcc-cccccCCC-CCcccceeEeccCccCCC--CCchhccCC
Q 042537 259 RMYKLDALSLSGNSLTGVVTE-SVFSELSNLKALHLDDNSF-TLKFSHDW-IPPFQLIIILLGSCQMGP--HFPKWLQTQ 333 (789)
Q Consensus 259 ~l~~L~~L~L~~n~l~~~~~~-~~~~~l~~L~~L~L~~n~i-~~~~~~~~-~~~~~L~~L~l~~~~~~~--~~~~~l~~l 333 (789)
.+..|+.|+.+++.-.+..+. ..-.+..+|+.+-++.++- +......+ ...+.|+.+++..|.... .+...-.++
T Consensus 292 ~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C 371 (483)
T KOG4341|consen 292 GCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNC 371 (483)
T ss_pred hhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCC
Confidence 456777777776543222211 1233567777777777653 11111111 234567777777665432 222223457
Q ss_pred CCccEEEccCCc-CCCCcchhHhh---hccCCCeeeeccccccccCCCCCCCCCCCCCEEEccCCccc
Q 042537 334 NQIEVLDISDAG-ISDTVPDWFWD---LSHTIADFNLSNNHIKGKLPNLSLRFDPFSSSIDISSNYFE 397 (789)
Q Consensus 334 ~~L~~L~ls~n~-i~~~~~~~~~~---~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~ 397 (789)
+.|+.+.++++. |++.....+.. ....+..+.+++++.+..-.-..+..+++|+.+++-+++-.
T Consensus 372 ~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~v 439 (483)
T KOG4341|consen 372 PRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDV 439 (483)
T ss_pred chhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhh
Confidence 778888877774 33331112211 12356677777776543222224556677888777776543
No 67
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.85 E-value=0.00071 Score=64.89 Aligned_cols=79 Identities=24% Similarity=0.243 Sum_probs=49.5
Q ss_pred CceeEEEcccC--ccccccchhhhccccCcEEEccCCcceeecCcc---cccCCCCCEEeCCCCcccccCc---hhhhcC
Q 042537 624 GLVKILDFSMN--KLSGTIPEEIMDLVGLVALNLSRNNLTGQITPK---IDQLKSLDFLDLSQNQFVGGIP---SSLCQL 695 (789)
Q Consensus 624 ~~L~~L~Ls~N--~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~---~~~l~~L~~L~Ls~N~l~~~~p---~~l~~l 695 (789)
++|+.|++|.| ++.+..+-....+++|++|+|++|+|.. +.. +..+.+|.+||+.+|..++.-- ..|.-+
T Consensus 65 p~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~--lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll 142 (260)
T KOG2739|consen 65 PKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD--LSTLRPLKELENLKSLDLFNCSVTNLDDYREKVFLLL 142 (260)
T ss_pred chhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc--ccccchhhhhcchhhhhcccCCccccccHHHHHHHHh
Confidence 44566677776 5554444444555778888888887752 333 3556677788888887765432 345566
Q ss_pred CCCCeEecc
Q 042537 696 SRLSVMNLS 704 (789)
Q Consensus 696 ~~L~~L~ls 704 (789)
++|++||-.
T Consensus 143 ~~L~~LD~~ 151 (260)
T KOG2739|consen 143 PSLKYLDGC 151 (260)
T ss_pred hhhcccccc
Confidence 777777543
No 68
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.70 E-value=0.00011 Score=70.38 Aligned_cols=84 Identities=24% Similarity=0.267 Sum_probs=58.2
Q ss_pred CCcEEEccCCCCcccCchhhhcCCCCcEEECCCCCccEEecCCCcCcccchhhhhCCCCCCEEEccCCCCCCccChhhhh
Q 042537 204 KLVVLDLDSNLLQGSLLEPFDRMVSLRTLYLGFNELEELFLGKNRLNGTINQWLSRMYKLDALSLSGNSLTGVVTESVFS 283 (789)
Q Consensus 204 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~ 283 (789)
+.++|++.++.+..+ .-..+++.|+.|.|+-|++..| ..|..|++|++|+|..|.|...-.-..+.
T Consensus 20 ~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL------------~pl~rCtrLkElYLRkN~I~sldEL~YLk 85 (388)
T KOG2123|consen 20 NVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSL------------APLQRCTRLKELYLRKNCIESLDELEYLK 85 (388)
T ss_pred HhhhhcccCCCccHH--HHHHhcccceeEEeeccccccc------------hhHHHHHHHHHHHHHhcccccHHHHHHHh
Confidence 566777777777644 3455677788888776555544 23677888888888888887444444577
Q ss_pred cCCCCcEEEccCCccccc
Q 042537 284 ELSNLKALHLDDNSFTLK 301 (789)
Q Consensus 284 ~l~~L~~L~L~~n~i~~~ 301 (789)
++++|+.|.|..|+-.+.
T Consensus 86 nlpsLr~LWL~ENPCc~~ 103 (388)
T KOG2123|consen 86 NLPSLRTLWLDENPCCGE 103 (388)
T ss_pred cCchhhhHhhccCCcccc
Confidence 888888888888876543
No 69
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.81 E-value=0.00088 Score=64.37 Aligned_cols=40 Identities=25% Similarity=0.350 Sum_probs=22.5
Q ss_pred CCCCcEEeccCccCCCCcchHHhhCCCCCCCEEEcCCCCCCCCc
Q 042537 123 LSRLKYLDLSYINLNKSRDWLRIIDKLPSLRTLNLEHCHLPPII 166 (789)
Q Consensus 123 l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~ 166 (789)
+.+.+.|++.+|.+.++ ....+++.|+.|.|+-|.|+...
T Consensus 18 l~~vkKLNcwg~~L~DI----sic~kMp~lEVLsLSvNkIssL~ 57 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI----SICEKMPLLEVLSLSVNKISSLA 57 (388)
T ss_pred HHHhhhhcccCCCccHH----HHHHhcccceeEEeeccccccch
Confidence 34445555666665554 34455666666666666665443
No 70
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.53 E-value=0.0036 Score=70.06 Aligned_cols=16 Identities=19% Similarity=0.202 Sum_probs=8.4
Q ss_pred hhcCCCCcEEEccCCc
Q 042537 282 FSELSNLKALHLDDNS 297 (789)
Q Consensus 282 ~~~l~~L~~L~L~~n~ 297 (789)
...+++++.+.+..+.
T Consensus 358 ~~~~~~l~~~~l~~~~ 373 (482)
T KOG1947|consen 358 LRSCPKLTDLSLSYCG 373 (482)
T ss_pred HhcCCCcchhhhhhhh
Confidence 4445555555555544
No 71
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.50 E-value=0.0069 Score=34.40 Aligned_cols=11 Identities=64% Similarity=0.649 Sum_probs=4.4
Q ss_pred cEEEccCCcce
Q 042537 651 VALNLSRNNLT 661 (789)
Q Consensus 651 ~~L~Ls~N~l~ 661 (789)
++|||++|+++
T Consensus 3 ~~Ldls~n~l~ 13 (22)
T PF00560_consen 3 EYLDLSGNNLT 13 (22)
T ss_dssp SEEEETSSEES
T ss_pred cEEECCCCcCE
Confidence 33444444443
No 72
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.46 E-value=0.0057 Score=34.75 Aligned_cols=21 Identities=48% Similarity=0.830 Sum_probs=14.0
Q ss_pred CCCEEeCCCCcccccCchhhhc
Q 042537 673 SLDFLDLSQNQFVGGIPSSLCQ 694 (789)
Q Consensus 673 ~L~~L~Ls~N~l~~~~p~~l~~ 694 (789)
+|++|||++|+++ .+|..|++
T Consensus 1 ~L~~Ldls~n~l~-~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLT-SIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEES-EEGTTTTT
T ss_pred CccEEECCCCcCE-eCChhhcC
Confidence 4677777777777 56655554
No 73
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=94.66 E-value=0.00069 Score=73.60 Aligned_cols=188 Identities=25% Similarity=0.195 Sum_probs=117.1
Q ss_pred EEEEEcCCCCCCCCcccccCccccCCCCCCEEeCCCCCCCCCCCc---ccccCC-CCCCEEecCCCcCCCC----CCccc
Q 042537 49 VIVLDLQVLVHSEPLKGTISPSLLKLYHLRHLDLSENDFSGSRIP---EFIGSL-NKLRYLSLSSAEFEGP----IPSQL 120 (789)
Q Consensus 49 v~~l~L~~~~~~~~l~~~l~~~~~~l~~L~~L~Ls~n~i~~~~~~---~~~~~l-~~L~~L~Ls~n~i~~~----~p~~~ 120 (789)
..++.|..+.....-...+-..+....+|..|++++|.+...... ..+... ..|++|++..|.+++. +++.+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 566777774332222233445677788899999999988743111 122222 4577788888877643 44556
Q ss_pred cCCCCCcEEeccCccCCCC--cchHHhhC----CCCCCCEEEcCCCCCCCCcccc--ccccccCCCC-CCeEEccCCCCC
Q 042537 121 GNLSRLKYLDLSYINLNKS--RDWLRIID----KLPSLRTLNLEHCHLPPIIPSD--LLHLNFSTSS-LGALYLFENSLS 191 (789)
Q Consensus 121 ~~l~~L~~L~Ls~n~l~~~--~~~~~~l~----~l~~L~~L~L~~n~l~~~~~~~--~~~~~l~~~~-L~~L~l~~n~l~ 191 (789)
.....++.++++.|.+... ..++..+. ...++++|++++|.++...... ...... ++ +.++++..|.+.
T Consensus 169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~--~~~~~el~l~~n~l~ 246 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASG--ESLLRELDLASNKLG 246 (478)
T ss_pred hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhcc--chhhHHHHHHhcCcc
Confidence 6788899999999887532 11333444 4778999999999876332211 111111 33 667888888877
Q ss_pred CCchhHH----HhhcCCCcEEEccCCCCcccCchh----hhcCCCCcEEECCCCC
Q 042537 192 SSIYPWL----FNISSKLVVLDLDSNLLQGSLLEP----FDRMVSLRTLYLGFNE 238 (789)
Q Consensus 192 ~~~~~~~----~~~~~~L~~L~Ls~n~i~~~~~~~----~~~l~~L~~L~L~~n~ 238 (789)
......+ ......+++++++.|.|+...... +..++.++.+.++.|.
T Consensus 247 d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~ 301 (478)
T KOG4308|consen 247 DVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNP 301 (478)
T ss_pred hHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCc
Confidence 5422222 222246689999999888654443 4556788888898886
No 74
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=94.05 E-value=0.035 Score=62.03 Aligned_cols=83 Identities=25% Similarity=0.205 Sum_probs=41.2
Q ss_pred cCCCcEEEccCCC-CcccCchhhhc-CCCCcEEECCCCCccEEecCCCcCccc-chhhhhCCCCCCEEEccCCCCCCc--
Q 042537 202 SSKLVVLDLDSNL-LQGSLLEPFDR-MVSLRTLYLGFNELEELFLGKNRLNGT-INQWLSRMYKLDALSLSGNSLTGV-- 276 (789)
Q Consensus 202 ~~~L~~L~Ls~n~-i~~~~~~~~~~-l~~L~~L~L~~n~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~L~~n~l~~~-- 276 (789)
.++|+.|+++++. ++...-..+.. +++|+.|.+.++.- ++.. +......+++|++|+++++.....
T Consensus 242 ~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~---------lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~ 312 (482)
T KOG1947|consen 242 CRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSN---------LTDEGLVSIAERCPSLRELDLSGCHGLTDSG 312 (482)
T ss_pred cCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCc---------cchhHHHHHHHhcCcccEEeeecCccchHHH
Confidence 3466777777666 44444344433 56666666553220 2222 122234566677777776654311
Q ss_pred cChhhhhcCCCCcEEEcc
Q 042537 277 VTESVFSELSNLKALHLD 294 (789)
Q Consensus 277 ~~~~~~~~l~~L~~L~L~ 294 (789)
+.. ...++++++.+.+.
T Consensus 313 l~~-~~~~c~~l~~l~~~ 329 (482)
T KOG1947|consen 313 LEA-LLKNCPNLRELKLL 329 (482)
T ss_pred HHH-HHHhCcchhhhhhh
Confidence 122 23445555554443
No 75
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=93.26 E-value=0.0042 Score=58.23 Aligned_cols=82 Identities=21% Similarity=0.202 Sum_probs=72.9
Q ss_pred ceeEEEcccCccccccchhhhccccCcEEEccCCcceeecCcccccCCCCCEEeCCCCcccccCchhhhcCCCCCeEecc
Q 042537 625 LVKILDFSMNKLSGTIPEEIMDLVGLVALNLSRNNLTGQITPKIDQLKSLDFLDLSQNQFVGGIPSSLCQLSRLSVMNLS 704 (789)
Q Consensus 625 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls 704 (789)
..+.||++.|++. ..-..|.-++.|..|+++.|++. ..|..+++...+..+++..|..+ ..|.++..++.+++++.-
T Consensus 43 r~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~k 119 (326)
T KOG0473|consen 43 RVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQK 119 (326)
T ss_pred eeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhhc
Confidence 4588999999987 55667888999999999999998 78999999999999999999998 678899999999999999
Q ss_pred CCccc
Q 042537 705 YNNLS 709 (789)
Q Consensus 705 ~N~l~ 709 (789)
.|++.
T Consensus 120 ~~~~~ 124 (326)
T KOG0473|consen 120 KTEFF 124 (326)
T ss_pred cCcch
Confidence 99874
No 76
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=93.13 E-value=0.0018 Score=60.60 Aligned_cols=87 Identities=16% Similarity=0.160 Sum_probs=53.3
Q ss_pred cccCCCCCCEEeCCCCCCCCCCCcccccCCCCCCEEecCCCcCCCCCCccccCCCCCcEEeccCccCCCCcchHHhhCCC
Q 042537 70 SLLKLYHLRHLDLSENDFSGSRIPEFIGSLNKLRYLSLSSAEFEGPIPSQLGNLSRLKYLDLSYINLNKSRDWLRIIDKL 149 (789)
Q Consensus 70 ~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l 149 (789)
.+..+...++||++.|++. .+-.-|..++.|..|+++.|.+. ..|..++.+..++.+++..|..+. .|..+++.
T Consensus 37 ei~~~kr~tvld~~s~r~v--n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~~---~p~s~~k~ 110 (326)
T KOG0473|consen 37 EIASFKRVTVLDLSSNRLV--NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHSQ---QPKSQKKE 110 (326)
T ss_pred hhhccceeeeehhhhhHHH--hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchhh---CCcccccc
Confidence 4555666666666666654 23444555666666666666666 566666666666666666665554 45566666
Q ss_pred CCCCEEEcCCCCC
Q 042537 150 PSLRTLNLEHCHL 162 (789)
Q Consensus 150 ~~L~~L~L~~n~l 162 (789)
++++.+++.++.+
T Consensus 111 ~~~k~~e~k~~~~ 123 (326)
T KOG0473|consen 111 PHPKKNEQKKTEF 123 (326)
T ss_pred CCcchhhhccCcc
Confidence 6666666666543
No 77
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=92.77 E-value=0.002 Score=70.03 Aligned_cols=25 Identities=24% Similarity=0.266 Sum_probs=16.4
Q ss_pred chhccCCCCccEEEccCCcCCCCcc
Q 042537 327 PKWLQTQNQIEVLDISDAGISDTVP 351 (789)
Q Consensus 327 ~~~l~~l~~L~~L~ls~n~i~~~~~ 351 (789)
...+..++.++++.++.|.+.+...
T Consensus 283 ~~~l~~~~~l~~l~l~~n~l~~~~~ 307 (478)
T KOG4308|consen 283 AEVLVSCRQLEELSLSNNPLTDYGV 307 (478)
T ss_pred HHHHhhhHHHHHhhcccCccccHHH
Confidence 3445566778888888887765433
No 78
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=90.92 E-value=0.21 Score=29.59 Aligned_cols=20 Identities=40% Similarity=0.429 Sum_probs=11.0
Q ss_pred CCCCEEeCCCCcccccCchh
Q 042537 672 KSLDFLDLSQNQFVGGIPSS 691 (789)
Q Consensus 672 ~~L~~L~Ls~N~l~~~~p~~ 691 (789)
++|+.|+|++|+|+...+..
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCEEECCCCcCCcCCHHH
Confidence 45666666666666443333
No 79
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=90.92 E-value=0.21 Score=29.59 Aligned_cols=20 Identities=40% Similarity=0.429 Sum_probs=11.0
Q ss_pred CCCCEEeCCCCcccccCchh
Q 042537 672 KSLDFLDLSQNQFVGGIPSS 691 (789)
Q Consensus 672 ~~L~~L~Ls~N~l~~~~p~~ 691 (789)
++|+.|+|++|+|+...+..
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCEEECCCCcCCcCCHHH
Confidence 45666666666666443333
No 80
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=90.27 E-value=0.16 Score=26.66 Aligned_cols=9 Identities=33% Similarity=0.438 Sum_probs=3.0
Q ss_pred cEEeCCCCc
Q 042537 505 ILMDLGKNG 513 (789)
Q Consensus 505 ~~L~ls~n~ 513 (789)
+.|++++|+
T Consensus 4 ~~L~l~~n~ 12 (17)
T PF13504_consen 4 RTLDLSNNR 12 (17)
T ss_dssp SEEEETSS-
T ss_pred CEEECCCCC
Confidence 333333333
No 81
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=89.88 E-value=0.31 Score=28.86 Aligned_cols=21 Identities=33% Similarity=0.355 Sum_probs=13.7
Q ss_pred CCCcEEeCCCCcccccCchhhh
Q 042537 502 SQLILMDLGKNGLSGEIPTWIG 523 (789)
Q Consensus 502 ~~L~~L~ls~n~l~~~~p~~~~ 523 (789)
++|++|++++|+|. .+|...|
T Consensus 2 ~~L~~L~L~~N~l~-~lp~~~f 22 (26)
T smart00370 2 PNLRELDLSNNQLS-SLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCC-cCCHHHc
Confidence 45667777777776 6666554
No 82
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=89.88 E-value=0.31 Score=28.86 Aligned_cols=21 Identities=33% Similarity=0.355 Sum_probs=13.7
Q ss_pred CCCcEEeCCCCcccccCchhhh
Q 042537 502 SQLILMDLGKNGLSGEIPTWIG 523 (789)
Q Consensus 502 ~~L~~L~ls~n~l~~~~p~~~~ 523 (789)
++|++|++++|+|. .+|...|
T Consensus 2 ~~L~~L~L~~N~l~-~lp~~~f 22 (26)
T smart00369 2 PNLRELDLSNNQLS-SLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCC-cCCHHHc
Confidence 45667777777776 6666554
No 83
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=86.07 E-value=0.27 Score=28.50 Aligned_cols=15 Identities=47% Similarity=0.623 Sum_probs=6.1
Q ss_pred CCCCEEeCCCCcccc
Q 042537 672 KSLDFLDLSQNQFVG 686 (789)
Q Consensus 672 ~~L~~L~Ls~N~l~~ 686 (789)
++|++|+|++|+|+.
T Consensus 2 ~~L~~L~l~~n~i~~ 16 (24)
T PF13516_consen 2 PNLETLDLSNNQITD 16 (24)
T ss_dssp TT-SEEE-TSSBEHH
T ss_pred CCCCEEEccCCcCCH
Confidence 344445555554443
No 84
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.85 E-value=0.27 Score=45.68 Aligned_cols=84 Identities=25% Similarity=0.249 Sum_probs=57.9
Q ss_pred CCcEEEccCCCCcccCchhhhcCCCCcEEECCCCCccEEecCCCcCcccchhhhh-CCCCCCEEEccCCC-CCCccChhh
Q 042537 204 KLVVLDLDSNLLQGSLLEPFDRMVSLRTLYLGFNELEELFLGKNRLNGTINQWLS-RMYKLDALSLSGNS-LTGVVTESV 281 (789)
Q Consensus 204 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~L~~L~L~~n~l~~~~~~~l~-~l~~L~~L~L~~n~-l~~~~~~~~ 281 (789)
.++.+|-++..|....-+.+..++.++.|.+.++. .+....-+.++ -.++|+.|++++|. |+ .-....
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck---------~~dD~~L~~l~~~~~~L~~L~lsgC~rIT-~~GL~~ 171 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCK---------YFDDWCLERLGGLAPSLQDLDLSGCPRIT-DGGLAC 171 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheecccc---------chhhHHHHHhcccccchheeeccCCCeec-hhHHHH
Confidence 58889999998887777778888888888887543 11111111122 25689999999885 44 444446
Q ss_pred hhcCCCCcEEEccCCc
Q 042537 282 FSELSNLKALHLDDNS 297 (789)
Q Consensus 282 ~~~l~~L~~L~L~~n~ 297 (789)
+..+++|+.|.+.+-+
T Consensus 172 L~~lknLr~L~l~~l~ 187 (221)
T KOG3864|consen 172 LLKLKNLRRLHLYDLP 187 (221)
T ss_pred HHHhhhhHHHHhcCch
Confidence 7888999999888754
No 85
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=79.95 E-value=1.3 Score=26.20 Aligned_cols=16 Identities=38% Similarity=0.428 Sum_probs=8.3
Q ss_pred CCCcEEeccCccCCCC
Q 042537 124 SRLKYLDLSYINLNKS 139 (789)
Q Consensus 124 ~~L~~L~Ls~n~l~~~ 139 (789)
++|+.|+|++|+|+.+
T Consensus 2 ~~L~~L~L~~NkI~~I 17 (26)
T smart00365 2 TNLEELDLSQNKIKKI 17 (26)
T ss_pred CccCEEECCCCcccee
Confidence 4455555555555443
No 86
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=75.53 E-value=0.93 Score=42.29 Aligned_cols=80 Identities=23% Similarity=0.211 Sum_probs=56.8
Q ss_pred eeEEEcccCccccccchhhhccccCcEEEccCCcceee-cCccc-ccCCCCCEEeCCCCc-ccccCchhhhcCCCCCeEe
Q 042537 626 VKILDFSMNKLSGTIPEEIMDLVGLVALNLSRNNLTGQ-ITPKI-DQLKSLDFLDLSQNQ-FVGGIPSSLCQLSRLSVMN 702 (789)
Q Consensus 626 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~-~p~~~-~~l~~L~~L~Ls~N~-l~~~~p~~l~~l~~L~~L~ 702 (789)
++.+|-++..|..+--+-+.+++.++.|.+.++.=-+- --+-+ +-.++|+.|+|++|. |+..--..+..+++|+.|.
T Consensus 103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~ 182 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLH 182 (221)
T ss_pred EEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHH
Confidence 58899999999877667778888888888888752210 00011 134799999999775 6655556677888888887
Q ss_pred ccC
Q 042537 703 LSY 705 (789)
Q Consensus 703 ls~ 705 (789)
+.+
T Consensus 183 l~~ 185 (221)
T KOG3864|consen 183 LYD 185 (221)
T ss_pred hcC
Confidence 765
No 87
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=75.32 E-value=2.5 Score=45.68 Aligned_cols=40 Identities=28% Similarity=0.326 Sum_probs=27.8
Q ss_pred cCCCCCcEEeccCccCCCCcchHHhhCCCCCCCEEEcCCC
Q 042537 121 GNLSRLKYLDLSYINLNKSRDWLRIIDKLPSLRTLNLEHC 160 (789)
Q Consensus 121 ~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n 160 (789)
.+.+.+..+.|++|++..+..+-..-..-|+|++|+|++|
T Consensus 215 ~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N 254 (585)
T KOG3763|consen 215 ENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHN 254 (585)
T ss_pred cCCcceeeeecccchhhchhhhhHHHHhcchhheeecccc
Confidence 3556677777888877776555555556677888888877
No 88
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=63.49 E-value=5.9 Score=23.93 Aligned_cols=14 Identities=50% Similarity=0.501 Sum_probs=9.5
Q ss_pred CCCCEEeCCCCccc
Q 042537 672 KSLDFLDLSQNQFV 685 (789)
Q Consensus 672 ~~L~~L~Ls~N~l~ 685 (789)
++|++|||++|.+.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 45677777777765
No 89
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=62.71 E-value=5.8 Score=51.68 Aligned_cols=37 Identities=27% Similarity=0.233 Sum_probs=26.2
Q ss_pred eCCCCcccccCchhhhcCCCCCeEeccCCcccccCCC
Q 042537 678 DLSQNQFVGGIPSSLCQLSRLSVMNLSYNNLSGKIPL 714 (789)
Q Consensus 678 ~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~ 714 (789)
||++|+|+.+.+..|..+++|+.|+|++|++.|.+..
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~CDC~L 37 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFECDCGL 37 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCcccccccc
Confidence 5677777766666777777777777777777766664
No 90
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=61.63 E-value=31 Score=36.93 Aligned_cols=94 Identities=19% Similarity=0.069 Sum_probs=49.8
Q ss_pred CCcEEEccCCCCcccCchh--hhcCCCCcEEECCCCCccEEecCCCcCcccchhhh--hCCCCCCEEEccCCCCCCccCh
Q 042537 204 KLVVLDLDSNLLQGSLLEP--FDRMVSLRTLYLGFNELEELFLGKNRLNGTINQWL--SRMYKLDALSLSGNSLTGVVTE 279 (789)
Q Consensus 204 ~L~~L~Ls~n~i~~~~~~~--~~~l~~L~~L~L~~n~L~~L~L~~n~l~~~~~~~l--~~l~~L~~L~L~~n~l~~~~~~ 279 (789)
++++|+...|...+..... ..+-+..+.+++..-.-+.+-.++- ...+... ....-+..+.++.+........
T Consensus 355 R~q~l~~rdnnldgeg~~vgk~~~s~s~r~l~agrs~~kqvm~s~~---~a~~v~k~~~~~g~l~el~ls~~~lka~l~s 431 (553)
T KOG4242|consen 355 RVQVLLQRDNNLDGEGGAVGKRKQSKSGRILKAGRSGDKQVMDSST---EAPPVSKKSRTHGVLAELSLSPGPLKAGLES 431 (553)
T ss_pred eeeEeeccccccccccccccceeeccccccccccccCCceeccccc---cchhhhhhhcccccccCcccCCCcccccHHH
Confidence 6888888888877654332 3344567777776432211111000 0001111 1122467788888887633222
Q ss_pred --hhhhcCCCCcEEEccCCcccc
Q 042537 280 --SVFSELSNLKALHLDDNSFTL 300 (789)
Q Consensus 280 --~~~~~l~~L~~L~L~~n~i~~ 300 (789)
.....-+.+..|++++|....
T Consensus 432 ~in~l~stqtl~kldisgn~mgd 454 (553)
T KOG4242|consen 432 AINKLLSTQTLAKLDISGNGMGD 454 (553)
T ss_pred HHHhhccCcccccccccCCCccc
Confidence 123345778888998887653
No 91
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=58.65 E-value=6.7 Score=23.21 Aligned_cols=17 Identities=24% Similarity=0.513 Sum_probs=9.4
Q ss_pred CCcEEeCCCCcccccCch
Q 042537 503 QLILMDLGKNGLSGEIPT 520 (789)
Q Consensus 503 ~L~~L~ls~n~l~~~~p~ 520 (789)
+|+.|++++|+++ .+|+
T Consensus 3 ~L~~L~vs~N~Lt-~LPe 19 (26)
T smart00364 3 SLKELNVSNNQLT-SLPE 19 (26)
T ss_pred ccceeecCCCccc-cCcc
Confidence 4555666666655 4443
No 92
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=57.91 E-value=53 Score=35.28 Aligned_cols=112 Identities=18% Similarity=0.078 Sum_probs=58.0
Q ss_pred CCCCeEEccCCCCCCCchhHHHhhcCCCcEEEccCCCCcccCchhhhcCCCCcEEECCCCCccEEecCCCcCcccchhhh
Q 042537 178 SSLGALYLFENSLSSSIYPWLFNISSKLVVLDLDSNLLQGSLLEPFDRMVSLRTLYLGFNELEELFLGKNRLNGTINQWL 257 (789)
Q Consensus 178 ~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~L~~L~L~~n~l~~~~~~~l 257 (789)
+.+++++++.|.+....|..+..-. --+.++.+..+.. .|..+. -.=..+.+++++++.|.....+|..+
T Consensus 165 pr~r~~dls~npi~dkvpihl~~p~---~pl~lr~c~lssk---fis~l~----~qsg~~~lteldls~n~~Kddip~~~ 234 (553)
T KOG4242|consen 165 PRARQHDLSPNPIGDKVPIHLPQPG---NPLSLRVCELSSK---FISKLL----IQSGRLWLTELDLSTNGGKDDIPRTL 234 (553)
T ss_pred chhhhhccCCCcccccCCccccCCC---Cccchhhhhhhhh---HHHHhh----hhhccccccccccccCCCCccchhHH
Confidence 6777888888877665554433221 1145555554432 233222 11122235566666777766666543
Q ss_pred hC---CCCCCEEEccCCCCCC--ccChhhhhcCCCCcEEEccCCccc
Q 042537 258 SR---MYKLDALSLSGNSLTG--VVTESVFSELSNLKALHLDDNSFT 299 (789)
Q Consensus 258 ~~---l~~L~~L~L~~n~l~~--~~~~~~~~~l~~L~~L~L~~n~i~ 299 (789)
.. -..++.++.+...+.- ....-.++.-+++...+++.|...
T Consensus 235 n~~a~~~vl~~ld~s~tgirlD~l~~~l~~g~~tkl~~~kls~ng~s 281 (553)
T KOG4242|consen 235 NKKAGTLVLFKLDRSTTGIRLDLLTSPLAAGRTTKLTFGKLSRNGTS 281 (553)
T ss_pred HHhhhhhhhhcccccccccchhhcccccccccccccchhhhccCCCC
Confidence 32 2346667766655541 111212344467777777776553
No 93
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=51.15 E-value=9.1 Score=41.60 Aligned_cols=36 Identities=33% Similarity=0.354 Sum_probs=16.3
Q ss_pred CCCCCEEEccCCCCCCccCh--hhhhcCCCCcEEEccCC
Q 042537 260 MYKLDALSLSGNSLTGVVTE--SVFSELSNLKALHLDDN 296 (789)
Q Consensus 260 l~~L~~L~L~~n~l~~~~~~--~~~~~l~~L~~L~L~~n 296 (789)
.+.+..+.|++|++.. +.. ..-...|+|+.|+|++|
T Consensus 217 ~p~i~sl~lsnNrL~~-Ld~~sslsq~apklk~L~LS~N 254 (585)
T KOG3763|consen 217 FPEILSLSLSNNRLYH-LDALSSLSQIAPKLKTLDLSHN 254 (585)
T ss_pred Ccceeeeecccchhhc-hhhhhHHHHhcchhheeecccc
Confidence 4445555555555541 111 01223355566666655
No 94
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=29.71 E-value=38 Score=19.78 Aligned_cols=11 Identities=45% Similarity=0.440 Sum_probs=5.4
Q ss_pred CCCcEEeccCc
Q 042537 124 SRLKYLDLSYI 134 (789)
Q Consensus 124 ~~L~~L~Ls~n 134 (789)
++|++|+|++|
T Consensus 2 ~~L~~L~l~~C 12 (26)
T smart00367 2 PNLRELDLSGC 12 (26)
T ss_pred CCCCEeCCCCC
Confidence 34555555544
No 95
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=24.89 E-value=46 Score=44.11 Aligned_cols=32 Identities=19% Similarity=0.372 Sum_probs=22.1
Q ss_pred cCCCcCcccchhhhhCCCCCCEEEccCCCCCC
Q 042537 244 LGKNRLNGTINQWLSRMYKLDALSLSGNSLTG 275 (789)
Q Consensus 244 L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 275 (789)
|++|+|+...+..|..+++|+.|+|++|.+.-
T Consensus 2 LSnN~LstLp~g~F~~L~sL~~LdLsgNPw~C 33 (2740)
T TIGR00864 2 ISNNKISTIEEGICANLCNLSEIDLSGNPFEC 33 (2740)
T ss_pred CCCCcCCccChHHhccCCCceEEEeeCCcccc
Confidence 44666666666677777777777777777653
Done!