Query 042537
Match_columns 789
No_of_seqs 743 out of 4455
Neff 10.2
Searched_HMMs 29240
Date Mon Mar 25 12:11:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042537.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042537hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 4.8E-89 1.7E-93 801.3 53.1 708 2-746 11-753 (768)
2 3rgz_A Protein brassinosteroid 100.0 2.4E-68 8.4E-73 625.6 41.3 593 48-710 78-742 (768)
3 1ziw_A TOLL-like receptor 3; i 100.0 1.9E-59 6.5E-64 546.1 52.0 587 47-714 25-627 (680)
4 1ziw_A TOLL-like receptor 3; i 100.0 2E-58 7E-63 537.4 46.9 587 66-737 18-627 (680)
5 3t6q_A CD180 antigen; protein- 100.0 3.2E-55 1.1E-59 503.6 42.7 531 66-715 26-566 (606)
6 3vq2_A TLR4, TOLL-like recepto 100.0 6.7E-54 2.3E-58 492.6 43.0 530 66-715 25-564 (606)
7 3t6q_A CD180 antigen; protein- 100.0 1.8E-53 6.2E-58 489.0 43.4 534 79-737 16-565 (606)
8 3j0a_A TOLL-like receptor 5; m 100.0 1.1E-53 3.7E-58 506.7 40.2 562 35-746 14-593 (844)
9 3vq2_A TLR4, TOLL-like recepto 100.0 1.2E-52 4E-57 482.3 39.7 531 77-737 13-563 (606)
10 4eco_A Uncharacterized protein 100.0 2.3E-54 7.8E-59 495.3 22.3 495 2-711 29-602 (636)
11 3j0a_A TOLL-like receptor 5; m 100.0 6E-52 2.1E-56 491.7 33.4 514 73-738 22-566 (844)
12 4ecn_A Leucine-rich repeat pro 100.0 3.6E-51 1.2E-55 474.9 32.0 519 2-709 268-864 (876)
13 2z63_A TOLL-like receptor 4, v 100.0 7.4E-49 2.5E-53 447.7 36.2 510 66-718 21-540 (570)
14 2z81_A CD282 antigen, TOLL-lik 100.0 4.9E-48 1.7E-52 438.5 33.1 500 34-717 3-518 (549)
15 4g8a_A TOLL-like receptor 4; l 100.0 2.9E-47 9.8E-52 440.9 35.0 530 66-714 45-585 (635)
16 2z63_A TOLL-like receptor 4, v 100.0 9.4E-47 3.2E-51 430.3 35.1 495 46-690 27-536 (570)
17 2z7x_B TOLL-like receptor 1, v 100.0 3E-46 1E-50 420.5 24.2 466 78-714 3-486 (520)
18 2z81_A CD282 antigen, TOLL-lik 100.0 3.4E-45 1.2E-49 415.2 27.4 487 78-736 8-514 (549)
19 4g8a_A TOLL-like receptor 4; l 100.0 1.1E-43 3.9E-48 410.7 38.2 531 80-737 36-585 (635)
20 2z7x_B TOLL-like receptor 1, v 100.0 9.5E-45 3.3E-49 408.3 20.3 462 153-737 3-486 (520)
21 4ecn_A Leucine-rich repeat pro 100.0 3.2E-44 1.1E-48 416.7 24.8 448 75-713 323-844 (876)
22 4eco_A Uncharacterized protein 100.0 7.9E-44 2.7E-48 408.0 20.7 373 270-734 192-602 (636)
23 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 5.1E-43 1.7E-47 397.3 21.6 459 149-715 30-516 (562)
24 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1E-41 3.6E-46 386.5 26.9 465 50-689 34-514 (562)
25 3v47_A TOLL-like receptor 5B a 100.0 4.2E-39 1.4E-43 356.0 28.5 391 182-718 14-417 (455)
26 1jl5_A Outer protein YOPM; leu 100.0 4E-39 1.4E-43 352.5 22.0 430 70-671 6-439 (454)
27 1jl5_A Outer protein YOPM; leu 100.0 4.1E-39 1.4E-43 352.4 20.4 322 98-565 9-331 (454)
28 1ogq_A PGIP-2, polygalacturona 100.0 2.5E-39 8.7E-44 337.2 17.8 291 1-321 4-302 (313)
29 3v47_A TOLL-like receptor 5B a 100.0 1.5E-37 5E-42 343.7 32.4 386 103-568 13-412 (455)
30 3bz5_A Internalin-J, INLJ; leu 100.0 1.6E-35 5.6E-40 324.1 29.9 375 68-537 35-409 (457)
31 3bz5_A Internalin-J, INLJ; leu 100.0 4.6E-35 1.6E-39 320.5 28.9 363 92-573 34-396 (457)
32 2id5_A Lingo-1, leucine rich r 100.0 7.6E-36 2.6E-40 331.7 21.9 142 430-572 128-269 (477)
33 1ogq_A PGIP-2, polygalacturona 100.0 2.2E-35 7.7E-40 307.4 20.7 259 430-741 50-312 (313)
34 1o6v_A Internalin A; bacterial 100.0 5.2E-34 1.8E-38 315.2 32.2 346 225-710 44-389 (466)
35 1o6v_A Internalin A; bacterial 100.0 6.5E-33 2.2E-37 306.4 34.8 191 430-686 199-389 (466)
36 2id5_A Lingo-1, leucine rich r 100.0 9.7E-34 3.3E-38 314.7 27.7 343 338-736 15-360 (477)
37 3o6n_A APL1; leucine-rich repe 100.0 8.5E-34 2.9E-38 306.3 25.1 238 430-736 141-378 (390)
38 3oja_B Anopheles plasmodium-re 100.0 3E-33 1E-37 318.6 25.3 238 430-736 147-384 (597)
39 3o6n_A APL1; leucine-rich repe 100.0 2.7E-31 9.1E-36 286.7 28.8 310 178-566 45-354 (390)
40 4fmz_A Internalin; leucine ric 100.0 3.5E-31 1.2E-35 281.2 28.7 196 450-709 151-346 (347)
41 4fmz_A Internalin; leucine ric 100.0 1.3E-30 4.6E-35 276.8 31.1 192 430-685 155-346 (347)
42 3oja_B Anopheles plasmodium-re 100.0 1.1E-30 3.9E-35 297.3 28.7 310 178-566 51-360 (597)
43 4fcg_A Uncharacterized protein 100.0 4.9E-32 1.7E-36 283.8 14.3 270 2-299 26-314 (328)
44 1z7x_W Ribonuclease inhibitor; 100.0 6.5E-33 2.2E-37 307.1 4.5 387 204-709 4-440 (461)
45 2ft3_A Biglycan; proteoglycan, 100.0 1.1E-29 3.6E-34 267.6 24.6 244 405-707 78-331 (332)
46 1xku_A Decorin; proteoglycan, 100.0 1.9E-29 6.5E-34 265.6 26.4 289 335-707 32-330 (330)
47 1z7x_W Ribonuclease inhibitor; 100.0 1.4E-32 4.7E-37 304.4 0.4 402 178-693 3-448 (461)
48 1xku_A Decorin; proteoglycan, 100.0 1.1E-28 3.6E-33 259.8 26.2 265 386-708 33-305 (330)
49 2ft3_A Biglycan; proteoglycan, 100.0 1.2E-28 4.1E-33 259.6 23.5 265 386-709 35-307 (332)
50 2z66_A Variable lymphocyte rec 100.0 3.1E-29 1.1E-33 260.9 17.7 251 409-714 11-266 (306)
51 3zyi_A Leucine-rich repeat-con 100.0 4.6E-28 1.6E-32 266.5 24.8 233 430-714 75-308 (452)
52 2z80_A TOLL-like receptor 2, v 100.0 4.6E-29 1.6E-33 265.2 15.4 278 386-714 33-319 (353)
53 3zyj_A Leucine-rich repeat-con 100.0 8.8E-28 3E-32 263.2 24.3 233 430-714 64-297 (440)
54 1ozn_A Reticulon 4 receptor; N 100.0 3.5E-28 1.2E-32 250.1 19.7 250 433-735 14-264 (285)
55 2z66_A Variable lymphocyte rec 100.0 4.8E-28 1.6E-32 252.0 19.1 276 387-714 10-292 (306)
56 2z80_A TOLL-like receptor 2, v 100.0 3.2E-28 1.1E-32 258.7 17.1 277 405-736 31-318 (353)
57 3zyj_A Leucine-rich repeat-con 100.0 1.9E-27 6.5E-32 260.6 23.5 253 430-737 43-297 (440)
58 3zyi_A Leucine-rich repeat-con 100.0 2.4E-27 8.1E-32 260.8 23.9 252 431-737 55-308 (452)
59 3ogk_B Coronatine-insensitive 100.0 3.3E-30 1.1E-34 294.9 -0.8 189 34-235 41-251 (592)
60 4fcg_A Uncharacterized protein 100.0 8.5E-28 2.9E-32 251.6 17.6 226 430-709 81-314 (328)
61 1ozn_A Reticulon 4 receptor; N 100.0 1.3E-27 4.3E-32 246.0 18.0 252 409-715 15-267 (285)
62 3ogk_B Coronatine-insensitive 99.9 1.3E-28 4.4E-33 281.7 7.9 87 624-710 436-527 (592)
63 2p1m_B Transport inhibitor res 99.9 6.3E-29 2.1E-33 284.5 -5.5 248 34-298 34-301 (594)
64 2z62_A TOLL-like receptor 4, v 99.9 3.6E-25 1.2E-29 226.4 22.2 229 435-717 12-245 (276)
65 3g06_A SSPH2 (leucine-rich rep 99.9 1.5E-24 5.3E-29 243.9 27.5 262 360-714 41-302 (622)
66 1wwl_A Monocyte differentiatio 99.9 8.3E-28 2.9E-32 250.4 0.2 80 626-710 230-310 (312)
67 3oja_A Leucine-rich immune mol 99.9 3.2E-26 1.1E-30 252.9 12.7 216 430-709 34-250 (487)
68 3o53_A Protein LRIM1, AGAP0063 99.9 4.7E-26 1.6E-30 237.7 13.2 216 430-709 34-250 (317)
69 3o53_A Protein LRIM1, AGAP0063 99.9 2.5E-26 8.4E-31 239.8 10.4 276 229-568 2-280 (317)
70 3g06_A SSPH2 (leucine-rich rep 99.9 2.3E-24 7.9E-29 242.4 26.4 268 335-696 41-308 (622)
71 1wwl_A Monocyte differentiatio 99.9 7.7E-27 2.6E-31 243.1 4.6 87 72-165 40-136 (312)
72 2o6q_A Variable lymphocyte rec 99.9 2.3E-24 8E-29 219.3 21.4 206 456-714 18-223 (270)
73 2o6q_A Variable lymphocyte rec 99.9 2.6E-24 8.9E-29 219.0 20.8 219 32-301 2-220 (270)
74 2z62_A TOLL-like receptor 4, v 99.9 2.6E-24 9E-29 220.0 19.6 213 430-689 28-241 (276)
75 3oja_A Leucine-rich immune mol 99.9 5.7E-25 2E-29 242.8 15.6 221 452-735 32-253 (487)
76 2p1m_B Transport inhibitor res 99.9 7.7E-27 2.6E-31 267.1 -1.0 82 625-706 457-541 (594)
77 1p9a_G Platelet glycoprotein I 99.9 1.1E-23 3.6E-28 216.2 19.3 206 450-712 6-211 (290)
78 3rfs_A Internalin B, repeat mo 99.9 2.3E-23 7.8E-28 212.1 14.9 220 433-715 22-241 (272)
79 3rfs_A Internalin B, repeat mo 99.9 2.5E-23 8.6E-28 211.8 14.9 185 475-713 38-222 (272)
80 1p9a_G Platelet glycoprotein I 99.9 1.9E-22 6.3E-27 206.9 20.1 201 430-687 10-210 (290)
81 3goz_A Leucine-rich repeat-con 99.9 5.8E-24 2E-28 226.3 6.7 257 410-712 3-300 (362)
82 2xwt_C Thyrotropin receptor; s 99.9 2.1E-22 7.2E-27 200.9 15.0 75 628-706 160-236 (239)
83 2ca6_A RAN GTPase-activating p 99.9 5.1E-24 1.7E-28 229.3 3.1 235 430-713 32-320 (386)
84 3m19_A Variable lymphocyte rec 99.9 3.7E-22 1.3E-26 200.6 15.6 191 503-744 36-232 (251)
85 2xwt_C Thyrotropin receptor; s 99.9 3.3E-22 1.1E-26 199.6 14.3 198 430-683 31-237 (239)
86 4glp_A Monocyte differentiatio 99.9 7E-23 2.4E-27 213.0 8.4 206 430-710 91-308 (310)
87 4glp_A Monocyte differentiatio 99.9 9.4E-23 3.2E-27 212.0 8.9 179 385-564 65-264 (310)
88 1h6u_A Internalin H; cell adhe 99.9 1.2E-21 4.2E-26 202.9 16.4 193 452-710 39-231 (308)
89 2ast_B S-phase kinase-associat 99.9 8.2E-23 2.8E-27 215.6 7.5 252 406-714 48-311 (336)
90 1h6u_A Internalin H; cell adhe 99.9 2E-21 7E-26 201.3 16.9 192 430-687 41-232 (308)
91 2ast_B S-phase kinase-associat 99.9 1.6E-22 5.4E-27 213.4 7.8 237 32-296 34-282 (336)
92 2ca6_A RAN GTPase-activating p 99.9 7.8E-23 2.7E-27 219.9 4.6 272 66-367 23-338 (386)
93 3m19_A Variable lymphocyte rec 99.9 7.2E-21 2.4E-25 191.2 18.1 178 457-687 17-194 (251)
94 3goz_A Leucine-rich repeat-con 99.9 1.2E-21 4E-26 208.5 12.2 276 52-356 3-306 (362)
95 4ay9_X Follicle-stimulating ho 99.8 3.7E-20 1.3E-24 195.8 18.1 223 430-707 30-257 (350)
96 2v70_A SLIT-2, SLIT homolog 2 99.8 9E-21 3.1E-25 185.8 11.2 158 505-715 14-172 (220)
97 4ay9_X Follicle-stimulating ho 99.8 5.6E-20 1.9E-24 194.4 14.3 244 433-733 12-259 (350)
98 2o6s_A Variable lymphocyte rec 99.8 8E-20 2.7E-24 177.9 14.0 63 627-696 127-189 (208)
99 2v9t_B SLIT homolog 2 protein 99.8 3.4E-20 1.2E-24 181.7 11.3 157 505-714 14-170 (220)
100 3cvr_A Invasion plasmid antige 99.8 1.6E-19 5.6E-24 200.3 17.2 190 430-697 59-255 (571)
101 2o6s_A Variable lymphocyte rec 99.8 1.1E-19 3.9E-24 176.8 14.1 133 430-563 28-160 (208)
102 3cvr_A Invasion plasmid antige 99.8 3.3E-19 1.1E-23 197.9 16.0 182 455-714 60-248 (571)
103 3e6j_A Variable lymphocyte rec 99.8 7.1E-19 2.4E-23 173.6 14.7 157 504-714 21-177 (229)
104 2xot_A Amphoterin-induced prot 99.8 3.1E-19 1.1E-23 189.5 11.9 181 480-713 20-206 (361)
105 2xot_A Amphoterin-induced prot 99.8 5.2E-19 1.8E-23 187.7 13.1 178 457-687 21-204 (361)
106 1h6t_A Internalin B; cell adhe 99.8 2.6E-18 8.9E-23 176.2 15.5 78 627-710 137-214 (291)
107 2v70_A SLIT-2, SLIT homolog 2 99.8 2.8E-18 9.7E-23 168.0 14.6 156 482-689 15-170 (220)
108 1h6t_A Internalin B; cell adhe 99.8 1E-18 3.5E-23 179.2 11.9 173 451-687 43-215 (291)
109 2v9t_B SLIT homolog 2 protein 99.7 1.8E-17 6.3E-22 162.2 16.1 141 433-577 14-154 (220)
110 1w8a_A SLIT protein; signaling 99.7 3E-18 1E-22 163.9 10.1 110 627-736 57-166 (192)
111 1m9s_A Internalin B; cell inva 99.7 5.3E-18 1.8E-22 190.5 13.7 190 407-663 23-212 (605)
112 1m9s_A Internalin B; cell inva 99.7 1.4E-17 4.8E-22 187.1 16.3 148 404-565 42-189 (605)
113 3e6j_A Variable lymphocyte rec 99.7 4.9E-17 1.7E-21 160.3 16.7 153 408-566 22-174 (229)
114 4ezg_A Putative uncharacterize 99.7 1.4E-17 4.9E-22 160.2 12.0 152 501-710 43-195 (197)
115 1xeu_A Internalin C; cellular 99.7 7.8E-18 2.7E-22 169.7 9.3 169 478-711 19-187 (263)
116 1w8a_A SLIT protein; signaling 99.7 2.1E-17 7.1E-22 158.1 11.6 175 505-736 11-187 (192)
117 1dce_A Protein (RAB geranylger 99.7 2.1E-19 7.1E-24 200.9 -4.8 84 627-713 466-550 (567)
118 4b8c_D Glucose-repressible alc 99.7 6.4E-18 2.2E-22 195.0 6.7 118 447-569 217-334 (727)
119 4ezg_A Putative uncharacterize 99.7 4.4E-17 1.5E-21 156.7 11.1 154 475-686 41-195 (197)
120 1xeu_A Internalin C; cellular 99.7 1.1E-17 3.9E-22 168.5 6.6 78 432-515 21-98 (263)
121 1dce_A Protein (RAB geranylger 99.7 1.6E-19 5.4E-24 201.8 -8.6 188 72-301 346-548 (567)
122 4b8c_D Glucose-repressible alc 99.7 1.1E-17 3.6E-22 193.2 4.7 202 2-225 131-338 (727)
123 2wfh_A SLIT homolog 2 protein 99.7 1.9E-16 6.4E-21 151.3 10.2 88 627-714 57-144 (193)
124 2ell_A Acidic leucine-rich nuc 99.6 7.4E-16 2.5E-20 144.0 12.4 133 526-709 23-160 (168)
125 3sb4_A Hypothetical leucine ri 99.6 1.5E-15 5.3E-20 158.8 14.9 219 430-703 101-328 (329)
126 2je0_A Acidic leucine-rich nuc 99.6 9.6E-16 3.3E-20 140.1 10.6 129 526-705 16-149 (149)
127 3sb4_A Hypothetical leucine ri 99.6 8.7E-16 3E-20 160.7 10.1 250 404-710 48-311 (329)
128 2o6r_A Variable lymphocyte rec 99.6 2.3E-15 7.9E-20 142.0 12.0 88 627-714 55-142 (177)
129 2wfh_A SLIT homolog 2 protein 99.6 5.2E-15 1.8E-19 141.3 11.7 129 505-687 13-141 (193)
130 2o6r_A Variable lymphocyte rec 99.6 1E-14 3.4E-19 137.6 12.4 133 504-689 9-141 (177)
131 4fdw_A Leucine rich hypothetic 99.6 6.2E-14 2.1E-18 149.6 19.9 220 430-708 157-382 (401)
132 2ell_A Acidic leucine-rich nuc 99.6 4.7E-15 1.6E-19 138.5 9.4 132 430-565 24-161 (168)
133 2je0_A Acidic leucine-rich nuc 99.6 4.4E-15 1.5E-19 135.7 8.7 128 502-681 17-149 (149)
134 4fs7_A Uncharacterized protein 99.5 5.7E-13 1.9E-17 143.0 22.9 310 215-577 59-368 (394)
135 4fdw_A Leucine rich hypothetic 99.5 3.3E-13 1.1E-17 144.0 19.5 219 430-709 135-358 (401)
136 1ds9_A Outer arm dynein; leuci 99.5 7.2E-16 2.5E-20 148.4 -1.2 135 518-709 40-185 (198)
137 1a9n_A U2A', U2A'; complex (nu 99.5 3.4E-14 1.2E-18 133.7 10.3 81 627-709 67-153 (176)
138 1a9n_A U2A', U2A'; complex (nu 99.5 3.8E-14 1.3E-18 133.4 10.1 135 497-686 14-154 (176)
139 3g39_A Variable lymphocyte rec 99.5 1.3E-13 4.5E-18 128.6 10.2 89 626-714 32-120 (170)
140 4fs7_A Uncharacterized protein 99.5 1.7E-12 5.7E-17 139.4 20.2 63 249-314 59-121 (394)
141 1ds9_A Outer arm dynein; leuci 99.4 2.5E-15 8.4E-20 144.6 -3.8 152 478-686 18-186 (198)
142 2r9u_A Variable lymphocyte rec 99.4 3.8E-13 1.3E-17 125.8 10.2 89 626-714 35-123 (174)
143 3g39_A Variable lymphocyte rec 99.4 1.8E-12 6.3E-17 120.7 11.0 63 627-689 57-119 (170)
144 3un9_A NLR family member X1; l 99.3 6.7E-14 2.3E-18 147.9 -2.2 84 626-709 185-283 (372)
145 4gt6_A Cell surface protein; l 99.3 9.8E-11 3.3E-15 125.5 22.1 86 255-343 81-169 (394)
146 2r9u_A Variable lymphocyte rec 99.3 7.1E-12 2.4E-16 117.1 11.4 104 457-564 15-118 (174)
147 4gt6_A Cell surface protein; l 99.3 6E-10 2.1E-14 119.4 25.2 266 252-577 54-336 (394)
148 3un9_A NLR family member X1; l 99.2 9.5E-13 3.3E-17 139.0 1.1 87 624-710 155-253 (372)
149 2ifg_A High affinity nerve gro 99.2 1.1E-11 3.9E-16 130.6 8.9 86 627-713 34-120 (347)
150 2ifg_A High affinity nerve gro 99.2 1.4E-11 4.7E-16 129.9 9.1 108 627-736 11-120 (347)
151 4h09_A Hypothetical leucine ri 99.0 3.9E-08 1.3E-12 104.7 23.8 140 430-575 217-356 (379)
152 4h09_A Hypothetical leucine ri 99.0 7.6E-08 2.6E-12 102.4 24.5 309 204-552 47-357 (379)
153 2ra8_A Uncharacterized protein 98.9 1.3E-09 4.5E-14 113.8 5.5 83 623-707 251-341 (362)
154 2ra8_A Uncharacterized protein 98.8 1.2E-08 4.2E-13 106.5 8.5 211 46-297 106-341 (362)
155 1io0_A Tropomodulin; LRR prote 98.4 1.2E-07 4.2E-12 89.0 4.0 84 626-709 67-164 (185)
156 3rw6_A Nuclear RNA export fact 98.4 4.1E-07 1.4E-11 89.7 6.9 65 647-713 169-237 (267)
157 3rw6_A Nuclear RNA export fact 98.3 2.9E-07 9.9E-12 90.8 4.4 81 621-703 167-258 (267)
158 1io0_A Tropomodulin; LRR prote 98.2 1.1E-06 3.6E-11 82.6 5.4 18 282-299 147-164 (185)
159 3e4g_A ATP synthase subunit S, 97.9 4.6E-06 1.6E-10 76.0 3.1 83 625-707 62-150 (176)
160 3e4g_A ATP synthase subunit S, 97.6 3.3E-05 1.1E-09 70.3 3.6 60 624-683 85-150 (176)
161 3rfe_A Platelet glycoprotein I 97.3 0.00034 1.2E-08 60.8 6.1 60 652-713 12-72 (130)
162 1pgv_A TMD-1, tropomodulin TMD 97.2 0.00022 7.7E-09 66.2 3.7 83 626-708 72-169 (197)
163 1pgv_A TMD-1, tropomodulin TMD 97.0 0.00057 1.9E-08 63.5 4.7 20 254-273 150-169 (197)
164 3rfe_A Platelet glycoprotein I 96.6 0.0038 1.3E-07 54.0 6.9 57 79-137 12-68 (130)
165 2lz0_A Uncharacterized protein 51.3 13 0.00046 29.6 3.8 46 249-296 8-53 (100)
166 2lz0_A Uncharacterized protein 47.4 22 0.00077 28.3 4.5 39 471-510 13-51 (100)
167 3ox7_P MH027; urokinase-type p 36.7 11 0.00039 19.6 0.7 12 31-42 4-15 (23)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=4.8e-89 Score=801.28 Aligned_cols=708 Identities=30% Similarity=0.424 Sum_probs=615.3
Q ss_pred HHHHHHHHHHhhcCcCCCCCCCCCCCCCCCCCCCceeeeEecCCCCcEEEEEcCCCCCCCCcccc---cCccccCCCCCC
Q 042537 2 EEEREALLEFKQSLVDEYGILSSWGREDDKRDCCYWRGVRCSNTTGHVIVLDLQVLVHSEPLKGT---ISPSLLKLYHLR 78 (789)
Q Consensus 2 ~~~~~~ll~~~~~~~~~~~~~~~w~~~~~~~~~c~w~gv~c~~~~~~v~~l~L~~~~~~~~l~~~---l~~~~~~l~~L~ 78 (789)
++|++|||+||+++.||. ++++|+ .+++||+|+||+|+ .++|++|+|++ ..+.|. +|+++.++++|+
T Consensus 11 ~~~~~all~~k~~~~~~~-~l~~W~---~~~~~C~w~gv~C~--~~~v~~L~L~~----~~l~g~~~~l~~~l~~L~~L~ 80 (768)
T 3rgz_A 11 YREIHQLISFKDVLPDKN-LLPDWS---SNKNPCTFDGVTCR--DDKVTSIDLSS----KPLNVGFSAVSSSLLSLTGLE 80 (768)
T ss_dssp HHHHHHHHHHHTTCSCTT-SSTTCC---TTSCGGGSTTEEEE--TTEEEEEECTT----SCCCEEHHHHHHHTTTCTTCC
T ss_pred HHHHHHHHHHHhhCCCcc-cccCCC---CCCCCcCCcceEEC--CCcEEEEECCC----CCcCCccCccChhHhccCccc
Confidence 679999999999999998 999998 47899999999998 68999999999 788898 899999999999
Q ss_pred EEeCCCCCCCCCCCcccccCCCCCCEEecCCCcCCCCCCc--cccCCCCCcEEeccCccCCCCcchHHhh-CCCCCCCEE
Q 042537 79 HLDLSENDFSGSRIPEFIGSLNKLRYLSLSSAEFEGPIPS--QLGNLSRLKYLDLSYINLNKSRDWLRII-DKLPSLRTL 155 (789)
Q Consensus 79 ~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~p~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~l-~~l~~L~~L 155 (789)
.++++.+.+. ..|..++.+++|++|+|++|.+.+.+|. .++++++|++|+|++|.+.+. .|..+ .++++|++|
T Consensus 81 ~l~~~~~~~~--~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~--~~~~~~~~l~~L~~L 156 (768)
T 3rgz_A 81 SLFLSNSHIN--GSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFP--GKVSGGLKLNSLEVL 156 (768)
T ss_dssp EEECTTSCEE--ECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECC--SSCCSCCCCTTCSEE
T ss_pred ccCCcCCCcC--CCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCc--CCHHHhccCCCCCEE
Confidence 9999999876 4678899999999999999999988888 999999999999999998864 34444 889999999
Q ss_pred EcCCCCCCCCcccccc-ccccCCCCCCeEEccCCCCCCCchhHHHhhcCCCcEEEccCCCCcccCchhhhcCCCCcEEEC
Q 042537 156 NLEHCHLPPIIPSDLL-HLNFSTSSLGALYLFENSLSSSIYPWLFNISSKLVVLDLDSNLLQGSLLEPFDRMVSLRTLYL 234 (789)
Q Consensus 156 ~L~~n~l~~~~~~~~~-~~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L 234 (789)
++++|.+++..+..+. +.++ ++|++|++++|.+.+..+. ...++|++|++++|.+.+.+|. ++++++|++|++
T Consensus 157 ~Ls~n~l~~~~~~~~~~~~~l--~~L~~L~Ls~n~l~~~~~~---~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~L 230 (768)
T 3rgz_A 157 DLSANSISGANVVGWVLSDGC--GELKHLAISGNKISGDVDV---SRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDI 230 (768)
T ss_dssp ECCSSCCEEETHHHHHHTTCC--TTCCEEECCSSEEESCCBC---TTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEEC
T ss_pred ECCCCccCCcCChhhhhhccC--CCCCEEECCCCcccccCCc---ccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEEC
Confidence 9999999887763211 4555 8999999999999876664 3345999999999999988777 999999999999
Q ss_pred CCCCccEEecCCCcCcccchhhhhCCCCCCEEEccCCCCCCccChhhhhcCCCCcEEEccCCcccccccCCCCCc-ccce
Q 042537 235 GFNELEELFLGKNRLNGTINQWLSRMYKLDALSLSGNSLTGVVTESVFSELSNLKALHLDDNSFTLKFSHDWIPP-FQLI 313 (789)
Q Consensus 235 ~~n~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~-~~L~ 313 (789)
+ +|.+++.+|..++++++|++|++++|.+.+.+|. . .+++|++|++++|++++..+..+... ++|+
T Consensus 231 s----------~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~--~-~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~ 297 (768)
T 3rgz_A 231 S----------GNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP--L-PLKSLQYLSLAENKFTGEIPDFLSGACDTLT 297 (768)
T ss_dssp C----------SSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCC--C-CCTTCCEEECCSSEEEESCCCCSCTTCTTCS
T ss_pred c----------CCcCCCcccHHHhcCCCCCEEECCCCcccCccCc--c-ccCCCCEEECcCCccCCccCHHHHhhcCcCC
Confidence 9 7778888999999999999999999999987776 2 89999999999999998888888775 9999
Q ss_pred eEeccCccCCCCCchhccCCCCccEEEccCCcCCCCcchhHhhhccCCCeeeeccccccccCCCCCCCCCC-CCCEEEcc
Q 042537 314 IILLGSCQMGPHFPKWLQTQNQIEVLDISDAGISDTVPDWFWDLSHTIADFNLSNNHIKGKLPNLSLRFDP-FSSSIDIS 392 (789)
Q Consensus 314 ~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~-~L~~L~l~ 392 (789)
+|++++|.+.+.+|..+..+++|++|++++|.+.+.+|.......++|+.|++++|.+++.+|. .+..++ .|+.|+++
T Consensus 298 ~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~-~l~~l~~~L~~L~Ls 376 (768)
T 3rgz_A 298 GLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPE-SLTNLSASLLTLDLS 376 (768)
T ss_dssp EEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCT-THHHHTTTCSEEECC
T ss_pred EEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccH-HHHhhhcCCcEEEcc
Confidence 9999999999999999999999999999999999888877445567999999999999998988 566665 89999999
Q ss_pred CCcccccCCCC-----CCCCcEEEcCCCcCccccchhcccCCCCCCEEEcCCCccccCCCcccccCCCCcEEEcCCCcCc
Q 042537 393 SNYFEGLIPPL-----PSNASVLNLSRNKFSESISFLCSINGHKLEFLDLSNNILSGRLPDCWMQFDRLAVLSLANNFFS 467 (789)
Q Consensus 393 ~n~l~~~~~~~-----~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 467 (789)
+|.+++.+|.. .++|+.|++++|++++.++..... +++|++|++++|.+++.+|..|.++++|+.|++++|+++
T Consensus 377 ~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~-l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~ 455 (768)
T 3rgz_A 377 SNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSN-CSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLE 455 (768)
T ss_dssp SSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGG-CTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCC
T ss_pred CCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhc-CCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCccc
Confidence 99999887765 467999999999999876654433 389999999999999999999999999999999999999
Q ss_pred ccCCccccccCcccEEEccCCeeeeeCCcCccCCCCCcEEeCCCCcccccCchhhhhcCCCCcEEEcCCCcccccCCCCc
Q 042537 468 GKIPKSMGFLHSIQTLSLYNNSLIGELPSFFKSCSQLILMDLGKNGLSGEIPTWIGEGLPKLVVLSLKSNKFHGNIPFQV 547 (789)
Q Consensus 468 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 547 (789)
+.+|..+..+++|++|++++|++++.+|..+.++++|++|++++|++++.+|.++. .+++|++|++++|++++.+|..+
T Consensus 456 ~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~-~l~~L~~L~L~~N~l~~~~p~~l 534 (768)
T 3rgz_A 456 GEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIG-RLENLAILKLSNNSFSGNIPAEL 534 (768)
T ss_dssp SCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGG-GCTTCCEEECCSSCCEEECCGGG
T ss_pred CcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHh-cCCCCCEEECCCCcccCcCCHHH
Confidence 99999999999999999999999999999999999999999999999999999987 79999999999999999999999
Q ss_pred cCCCcCceEeccCCcccccCCccccccccCcccCCCcc-cc--ccC----------------ccccccccccccc--ccc
Q 042537 548 CQLSYIQILDLSLNNISGIIPKCLNNFTGMAQKSSSNL-AI--TSN----------------YTFERQGIEFLES--YVD 606 (789)
Q Consensus 548 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~-~~--~~~----------------~~~~~~~~~~~~~--~~~ 606 (789)
..+++|+.|++++|++++.+|..+.....+........ .. ... .......+..+.. ...
T Consensus 535 ~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 614 (768)
T 3rgz_A 535 GDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCN 614 (768)
T ss_dssp GGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSC
T ss_pred cCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccc
Confidence 99999999999999999999998877666544322110 00 000 0000000000000 000
Q ss_pred eeEEEeeccccccccccCceeEEEcccCccccccchhhhccccCcEEEccCCcceeecCcccccCCCCCEEeCCCCcccc
Q 042537 607 NVVLTWKGSQHEYRSTLGLVKILDFSMNKLSGTIPEEIMDLVGLVALNLSRNNLTGQITPKIDQLKSLDFLDLSQNQFVG 686 (789)
Q Consensus 607 ~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 686 (789)
.......|..+.....++.|+.||+++|+++|.+|..|+++++|+.|+|++|+++|.+|..++++++|++|||++|+++|
T Consensus 615 l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g 694 (768)
T 3rgz_A 615 ITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDG 694 (768)
T ss_dssp TTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEE
T ss_pred cccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccC
Confidence 00122344455556778899999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCchhhhcCCCCCeEeccCCcccccCCCCCccccccccccCCCCCCCCCCCCCCCCCCCC
Q 042537 687 GIPSSLCQLSRLSVMNLSYNNLSGKIPLGTQLQSFNASVYAGNPELCGLPLRNKCPDEDS 746 (789)
Q Consensus 687 ~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~n~~lc~~~l~~~c~~~~~ 746 (789)
.+|..+..+++|++||+++|+++|.||.++++.+|...+|.|||++||.|+. .|..+..
T Consensus 695 ~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l~-~C~~~~~ 753 (768)
T 3rgz_A 695 RIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLP-RCDPSNA 753 (768)
T ss_dssp CCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTTSC-CCCSCC-
T ss_pred cCChHHhCCCCCCEEECcCCcccccCCCchhhccCCHHHhcCCchhcCCCCc-CCCCCcc
Confidence 9999999999999999999999999999999999999999999999999987 8976543
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=2.4e-68 Score=625.64 Aligned_cols=593 Identities=29% Similarity=0.379 Sum_probs=464.3
Q ss_pred cEEEEEcCCCCCCCCcccccCccccCCCCCCEEeCCCCCCCCCCCcc--cccCCCCCCEEecCCCcCCCCCCccc-cCCC
Q 042537 48 HVIVLDLQVLVHSEPLKGTISPSLLKLYHLRHLDLSENDFSGSRIPE--FIGSLNKLRYLSLSSAEFEGPIPSQL-GNLS 124 (789)
Q Consensus 48 ~v~~l~L~~~~~~~~l~~~l~~~~~~l~~L~~L~Ls~n~i~~~~~~~--~~~~l~~L~~L~Ls~n~i~~~~p~~~-~~l~ 124 (789)
+++.++++. +.+ ..+|+.|+++++|++|+|++|.+++. +|. .++++++|++|+|++|.+.+..|..+ .+++
T Consensus 78 ~L~~l~~~~----~~~-~~l~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~ 151 (768)
T 3rgz_A 78 GLESLFLSN----SHI-NGSVSGFKCSASLTSLDLSRNSLSGP-VTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLN 151 (768)
T ss_dssp TCCEEECTT----SCE-EECCCCCCCCTTCCEEECCSSEEEEE-GGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCT
T ss_pred cccccCCcC----CCc-CCCchhhccCCCCCEEECCCCcCCCc-CCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCC
Confidence 345555555 333 23558899999999999999999875 777 89999999999999999998888776 8999
Q ss_pred CCcEEeccCccCCCCcchHHh---hCCCCCCCEEEcCCCCCCCCccccccccccCCCCCCeEEccCCCCCCCchhHHHhh
Q 042537 125 RLKYLDLSYINLNKSRDWLRI---IDKLPSLRTLNLEHCHLPPIIPSDLLHLNFSTSSLGALYLFENSLSSSIYPWLFNI 201 (789)
Q Consensus 125 ~L~~L~Ls~n~l~~~~~~~~~---l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~~ 201 (789)
+|++|++++|++++. .|.. +.++++|++|++++|.+.+..+ . ..+ ++|++|++++|.+++.+|. +..+
T Consensus 152 ~L~~L~Ls~n~l~~~--~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~--~~l--~~L~~L~Ls~n~l~~~~~~-l~~l 222 (768)
T 3rgz_A 152 SLEVLDLSANSISGA--NVVGWVLSDGCGELKHLAISGNKISGDVD--V--SRC--VNLEFLDVSSNNFSTGIPF-LGDC 222 (768)
T ss_dssp TCSEEECCSSCCEEE--THHHHHHTTCCTTCCEEECCSSEEESCCB--C--TTC--TTCCEEECCSSCCCSCCCB-CTTC
T ss_pred CCCEEECCCCccCCc--CChhhhhhccCCCCCEEECCCCcccccCC--c--ccC--CcCCEEECcCCcCCCCCcc-cccC
Confidence 999999999999875 3444 8999999999999999987766 3 445 9999999999999987776 5444
Q ss_pred cCCCcEEEccCCCCcccCchhhhcCCCCcEEECCCCC------------ccEEecCCCcCcccchhhhhCC-CCCCEEEc
Q 042537 202 SSKLVVLDLDSNLLQGSLLEPFDRMVSLRTLYLGFNE------------LEELFLGKNRLNGTINQWLSRM-YKLDALSL 268 (789)
Q Consensus 202 ~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~------------L~~L~L~~n~l~~~~~~~l~~l-~~L~~L~L 268 (789)
++|++|++++|.+++..|..|.++++|++|++++|+ |++|++++|.+++.+|..+... ++|++|++
T Consensus 223 -~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~L 301 (768)
T 3rgz_A 223 -SALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDL 301 (768)
T ss_dssp -CSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCCCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEEC
T ss_pred -CCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCccccCCCCEEECcCCccCCccCHHHHhhcCcCCEEEC
Confidence 499999999999999999999999999999999875 5567777777777777766654 77777777
Q ss_pred cCCCCCCccChhhhhcCCCCcEEEccCCcccccccCC-CCCcccceeEeccCccCCCCCchhccCCC-CccEEEccCCcC
Q 042537 269 SGNSLTGVVTESVFSELSNLKALHLDDNSFTLKFSHD-WIPPFQLIIILLGSCQMGPHFPKWLQTQN-QIEVLDISDAGI 346 (789)
Q Consensus 269 ~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~l~~l~-~L~~L~ls~n~i 346 (789)
++|.+++.+|. .|.++++|++|++++|++.+..+.. +..+++|++|++++|.+.+.+|..+..++ +|++|++++|.+
T Consensus 302 s~n~l~~~~p~-~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l 380 (768)
T 3rgz_A 302 SGNHFYGAVPP-FFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNF 380 (768)
T ss_dssp CSSEEEECCCG-GGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEE
T ss_pred cCCcCCCccch-HHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCc
Confidence 77777766665 5777777777777777777555544 66777777777777777777777777766 777777777777
Q ss_pred CCCcchhHhhh-ccCCCeeeeccccccccCCCCCCCCCCCCCEEEccCCcccccCCCC---CCCCcEEEcCCCcCccccc
Q 042537 347 SDTVPDWFWDL-SHTIADFNLSNNHIKGKLPNLSLRFDPFSSSIDISSNYFEGLIPPL---PSNASVLNLSRNKFSESIS 422 (789)
Q Consensus 347 ~~~~~~~~~~~-~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~n~i~~~~~ 422 (789)
++..|..+... .++|+.|++++|.+++.+|. .+..++.|+.|++++|.+++.+|.. +++|+.|++++|++.+.++
T Consensus 381 ~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~-~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p 459 (768)
T 3rgz_A 381 SGPILPNLCQNPKNTLQELYLQNNGFTGKIPP-TLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIP 459 (768)
T ss_dssp EEECCTTTTCSTTCCCCEEECCSSEEEEECCG-GGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCC
T ss_pred CCCcChhhhhcccCCccEEECCCCccccccCH-HHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCC
Confidence 76666655431 34677777777777777776 6677777777777777777766653 5677777777777776655
Q ss_pred hhcccCCCCCCEEEcCCCccccCCCcccccCCCCcEEEcCCCcCcccCCccccccCcccEEEccCCeeeeeCCcCccCCC
Q 042537 423 FLCSINGHKLEFLDLSNNILSGRLPDCWMQFDRLAVLSLANNFFSGKIPKSMGFLHSIQTLSLYNNSLIGELPSFFKSCS 502 (789)
Q Consensus 423 ~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 502 (789)
..... +++|++|++++|++++.+|..+.++++|++|++++|++++.+|..+..+++|++|++++|++++.+|..+..++
T Consensus 460 ~~~~~-l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~ 538 (768)
T 3rgz_A 460 QELMY-VKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCR 538 (768)
T ss_dssp GGGGG-CTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCT
T ss_pred HHHcC-CCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCC
Confidence 43322 26777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred CCcEEeCCCCcccccCchhhhhcCCCCc----------------------------------------------EEEcCC
Q 042537 503 QLILMDLGKNGLSGEIPTWIGEGLPKLV----------------------------------------------VLSLKS 536 (789)
Q Consensus 503 ~L~~L~ls~n~l~~~~p~~~~~~l~~L~----------------------------------------------~L~L~~ 536 (789)
+|+.|++++|+++|.+|..++. ...+. .++++.
T Consensus 539 ~L~~L~Ls~N~l~g~ip~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~ 617 (768)
T 3rgz_A 539 SLIWLDLNTNLFNGTIPAAMFK-QSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITS 617 (768)
T ss_dssp TCCEEECCSSEEESBCCGGGGT-TTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTS
T ss_pred CCCEEECCCCccCCcCChHHhc-ccchhhhhccccccccccccccccccccccccccccccccchhhhcccccccccccc
Confidence 7777777777777777776652 22222 223344
Q ss_pred CcccccCCCCccCCCcCceEeccCCcccccCCccccccccCcccCCCccccccCcccccccccccccccceeEEEeeccc
Q 042537 537 NKFHGNIPFQVCQLSYIQILDLSLNNISGIIPKCLNNFTGMAQKSSSNLAITSNYTFERQGIEFLESYVDNVVLTWKGSQ 616 (789)
Q Consensus 537 n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 616 (789)
|.+.|.+|..+..+++|+.||+++|+++|.+|..+++++.|
T Consensus 618 ~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L--------------------------------------- 658 (768)
T 3rgz_A 618 RVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYL--------------------------------------- 658 (768)
T ss_dssp CEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTC---------------------------------------
T ss_pred ceecccCchhhhccccccEEECcCCcccccCCHHHhccccC---------------------------------------
Confidence 66666677777778888888888888888888887777666
Q ss_pred cccccccCceeEEEcccCccccccchhhhccccCcEEEccCCcceeecCcccccCCCCCEEeCCCCcccccCchhhhcCC
Q 042537 617 HEYRSTLGLVKILDFSMNKLSGTIPEEIMDLVGLVALNLSRNNLTGQITPKIDQLKSLDFLDLSQNQFVGGIPSSLCQLS 696 (789)
Q Consensus 617 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~ 696 (789)
+.|+|++|+++|.+|..|+++++|++|||++|+++|.+|..++.+++|++||+++|+++|.+|.. ..+.
T Consensus 659 ----------~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~-~~~~ 727 (768)
T 3rgz_A 659 ----------FILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM-GQFE 727 (768)
T ss_dssp ----------CEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSS-SSGG
T ss_pred ----------CEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCc-hhhc
Confidence 89999999999999999999999999999999999999999999999999999999999999975 3344
Q ss_pred CCCeEeccCCc-ccc
Q 042537 697 RLSVMNLSYNN-LSG 710 (789)
Q Consensus 697 ~L~~L~ls~N~-l~~ 710 (789)
.+....+.+|+ ++|
T Consensus 728 ~~~~~~~~gN~~Lcg 742 (768)
T 3rgz_A 728 TFPPAKFLNNPGLCG 742 (768)
T ss_dssp GSCGGGGCSCTEEES
T ss_pred cCCHHHhcCCchhcC
Confidence 55666777886 555
No 3
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=1.9e-59 Score=546.09 Aligned_cols=587 Identities=21% Similarity=0.208 Sum_probs=400.0
Q ss_pred CcEEEEEcCCCCCCCCcccccCccccCCCCCCEEeCCCCCCCCCCCcccccCCCCCCEEecCCCcCCCCCCccccCCCCC
Q 042537 47 GHVIVLDLQVLVHSEPLKGTISPSLLKLYHLRHLDLSENDFSGSRIPEFIGSLNKLRYLSLSSAEFEGPIPSQLGNLSRL 126 (789)
Q Consensus 47 ~~v~~l~L~~~~~~~~l~~~l~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L 126 (789)
.++++|+|++ +.+.+..+..|.++++|++|++++|.+++. .|..|+++++|++|+|++|.+++..+.+|+++++|
T Consensus 25 ~~l~~L~Ls~----n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L 99 (680)
T 1ziw_A 25 TNITVLNLTH----NQLRRLPAANFTRYSQLTSLDVGFNTISKL-EPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNL 99 (680)
T ss_dssp TTCSEEECCS----SCCCCCCGGGGGGGTTCSEEECCSSCCCCC-CTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred CCCcEEECCC----CCCCCcCHHHHhCCCcCcEEECCCCccCcc-CHHHHhcccCcCEEECCCCccCccChhhhccCCCC
Confidence 4566666666 555554445566666666666666666654 55666666666666666666665444456666666
Q ss_pred cEEeccCccCCCCcchHHhhCCCCCCCEEEcCCCCCCCCccccccccccCCCCCCeEEccCCCCCCCchhHHHhh-cCCC
Q 042537 127 KYLDLSYINLNKSRDWLRIIDKLPSLRTLNLEHCHLPPIIPSDLLHLNFSTSSLGALYLFENSLSSSIYPWLFNI-SSKL 205 (789)
Q Consensus 127 ~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~~-~~~L 205 (789)
++|++++|++++++ |..|+++++|++|++++|.+.+..+. .+.++ ++|++|++++|.+++..+..+... .++|
T Consensus 100 ~~L~L~~n~l~~~~--~~~~~~l~~L~~L~Ls~n~l~~~~~~--~~~~l--~~L~~L~L~~n~l~~~~~~~~~~~~~~~L 173 (680)
T 1ziw_A 100 TELHLMSNSIQKIK--NNPFVKQKNLITLDLSHNGLSSTKLG--TQVQL--ENLQELLLSNNKIQALKSEELDIFANSSL 173 (680)
T ss_dssp SEEECCSSCCCCCC--SCTTTTCTTCCEEECCSSCCSCCCCC--SSSCC--TTCCEEECCSSCCCCBCHHHHGGGTTCEE
T ss_pred CEEECCCCccCccC--hhHccccCCCCEEECCCCcccccCch--hhccc--ccCCEEEccCCcccccCHHHhhccccccc
Confidence 66666666666542 24566666666666666666655552 22333 666666666666654444333211 1356
Q ss_pred cEEEccCCCCcccCchhhhcCCCCcEEECCCCCccEEecCCCcCcccchhhh---hCCCCCCEEEccCCCCCCccChhhh
Q 042537 206 VVLDLDSNLLQGSLLEPFDRMVSLRTLYLGFNELEELFLGKNRLNGTINQWL---SRMYKLDALSLSGNSLTGVVTESVF 282 (789)
Q Consensus 206 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~L~~L~L~~n~l~~~~~~~l---~~l~~L~~L~L~~n~l~~~~~~~~~ 282 (789)
++|++++|.+++..+..|..+++|+.|+++++ .+.......+ ...++|++|++++|.+.+..+. .|
T Consensus 174 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~----------~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~-~~ 242 (680)
T 1ziw_A 174 KKLELSSNQIKEFSPGCFHAIGRLFGLFLNNV----------QLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNT-TF 242 (680)
T ss_dssp SEEECTTCCCCCBCTTGGGGSSEECEEECTTC----------CCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTT-TT
T ss_pred cEEECCCCcccccChhhhhhhhhhhhhhcccc----------ccChhhHHHHHHHhhhccccEEEccCCcccccChh-Hh
Confidence 66666666666666666666666666666533 2222111111 1235666666666666643333 45
Q ss_pred hcCCC--CcEEEccCCcccccccCCCCCcccceeEeccCccCCCCCchhccCCCCccEEEccCCcCCCCcchhHhhhccC
Q 042537 283 SELSN--LKALHLDDNSFTLKFSHDWIPPFQLIIILLGSCQMGPHFPKWLQTQNQIEVLDISDAGISDTVPDWFWDLSHT 360 (789)
Q Consensus 283 ~~l~~--L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~n~i~~~~~~~~~~~~~~ 360 (789)
..++. |++|++++|.+.+..+..+..+++|++|++++|.+.+..|..+..+++|++|++++|...+..+.
T Consensus 243 ~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~-------- 314 (680)
T 1ziw_A 243 LGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISL-------- 314 (680)
T ss_dssp GGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------------
T ss_pred hccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhccccc--------
Confidence 55533 66666666666655555555566666666666666555555566666666666655433321110
Q ss_pred CCeeeeccccccccCCCCCCCCCCCCCEEEccCCcccccCCCC---CCCCcEEEcCCCcCcccc-chhcc--cCCCCCCE
Q 042537 361 IADFNLSNNHIKGKLPNLSLRFDPFSSSIDISSNYFEGLIPPL---PSNASVLNLSRNKFSESI-SFLCS--INGHKLEF 434 (789)
Q Consensus 361 L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~n~i~~~~-~~~~~--~~~~~L~~ 434 (789)
..+. .++...+..+++|++|++++|.+++..+.. +++|+.|++++|.+.... +...+ ...++|+.
T Consensus 315 --------~~lp-~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~ 385 (680)
T 1ziw_A 315 --------ASLP-KIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHI 385 (680)
T ss_dssp ----------CC-EECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCE
T ss_pred --------cccc-ccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCce
Confidence 0000 111224555666777777777776665543 456777777777643221 11111 11258999
Q ss_pred EEcCCCccccCCCcccccCCCCcEEEcCCCcCcccCC-ccccccCcccEEEccCCeeeeeCCcCccCCCCCcEEeCCCCc
Q 042537 435 LDLSNNILSGRLPDCWMQFDRLAVLSLANNFFSGKIP-KSMGFLHSIQTLSLYNNSLIGELPSFFKSCSQLILMDLGKNG 513 (789)
Q Consensus 435 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~ 513 (789)
|++++|++++..|.+|..+++|+.|++++|.+.+.+| ..|..+++|++|++++|++.+..+..|..+++|+.|++++|.
T Consensus 386 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~ 465 (680)
T 1ziw_A 386 LNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVA 465 (680)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSC
T ss_pred EECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhcccc
Confidence 9999999999999999999999999999999987665 688999999999999999999999999999999999999999
Q ss_pred cc--ccCchhhhhcCCCCcEEEcCCCcccccCCCCccCCCcCceEeccCCcccccCCccccccccCcccCCCccccccCc
Q 042537 514 LS--GEIPTWIGEGLPKLVVLSLKSNKFHGNIPFQVCQLSYIQILDLSLNNISGIIPKCLNNFTGMAQKSSSNLAITSNY 591 (789)
Q Consensus 514 l~--~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~ 591 (789)
+. +.+|..+. .+++|+.|++++|++++..+..+.++++|++|++++|++++..+..+..-
T Consensus 466 l~~~~~~p~~~~-~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~----------------- 527 (680)
T 1ziw_A 466 LKNVDSSPSPFQ-PLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGG----------------- 527 (680)
T ss_dssp CBCTTCSSCTTT-TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTS-----------------
T ss_pred ccccccCCcccc-cCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCC-----------------
Confidence 86 46677666 79999999999999998888889999999999999999986533222100
Q ss_pred ccccccccccccccceeEEEeeccccccccccCceeEEEcccCccccccchhhhccccCcEEEccCCcceeecCcccccC
Q 042537 592 TFERQGIEFLESYVDNVVLTWKGSQHEYRSTLGLVKILDFSMNKLSGTIPEEIMDLVGLVALNLSRNNLTGQITPKIDQL 671 (789)
Q Consensus 592 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l 671 (789)
.......++.|+.|++++|+++...+..|.++++|++|+|++|++++..+..|..+
T Consensus 528 ------------------------~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l 583 (680)
T 1ziw_A 528 ------------------------PIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQ 583 (680)
T ss_dssp ------------------------CCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred ------------------------cchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCC
Confidence 00112345567999999999995555679999999999999999997777778999
Q ss_pred CCCCEEeCCCCcccccCchhhh-cCCCCCeEeccCCcccccCCC
Q 042537 672 KSLDFLDLSQNQFVGGIPSSLC-QLSRLSVMNLSYNNLSGKIPL 714 (789)
Q Consensus 672 ~~L~~L~Ls~N~l~~~~p~~l~-~l~~L~~L~ls~N~l~~~~p~ 714 (789)
++|+.|+|++|++++..|..+. .+++|+.+++++|++.|.++.
T Consensus 584 ~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~ 627 (680)
T 1ziw_A 584 VSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCES 627 (680)
T ss_dssp TTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCC
T ss_pred CCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCcc
Confidence 9999999999999999988887 789999999999999999885
No 4
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=2e-58 Score=537.37 Aligned_cols=587 Identities=20% Similarity=0.177 Sum_probs=455.3
Q ss_pred ccCccccCCCCCCEEeCCCCCCCCCCCcccccCCCCCCEEecCCCcCCCCCCccccCCCCCcEEeccCccCCCCcchHHh
Q 042537 66 TISPSLLKLYHLRHLDLSENDFSGSRIPEFIGSLNKLRYLSLSSAEFEGPIPSQLGNLSRLKYLDLSYINLNKSRDWLRI 145 (789)
Q Consensus 66 ~l~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 145 (789)
.+|..+. +++++|++++|.+++. .+..|+++++|++|++++|.+++..|.+|+++++|++|+|++|+++.++. ..
T Consensus 18 ~ip~~~~--~~l~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~--~~ 92 (680)
T 1ziw_A 18 QVPDDLP--TNITVLNLTHNQLRRL-PAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSD--KT 92 (680)
T ss_dssp SCCSCSC--TTCSEEECCSSCCCCC-CGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCT--TT
T ss_pred ccccccC--CCCcEEECCCCCCCCc-CHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccCh--hh
Confidence 5666554 7999999999999975 66789999999999999999999999999999999999999999998532 57
Q ss_pred hCCCCCCCEEEcCCCCCCCCccccccccccCCCCCCeEEccCCCCCCCchhHHHhhcCCCcEEEccCCCCcccCchhhh-
Q 042537 146 IDKLPSLRTLNLEHCHLPPIIPSDLLHLNFSTSSLGALYLFENSLSSSIYPWLFNISSKLVVLDLDSNLLQGSLLEPFD- 224 (789)
Q Consensus 146 l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~- 224 (789)
|+++++|++|++++|.+.+..+ ..+.++ ++|++|++++|.+++..+..+..+. +|++|++++|.+++..+..+.
T Consensus 93 ~~~l~~L~~L~L~~n~l~~~~~--~~~~~l--~~L~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~ 167 (680)
T 1ziw_A 93 FAFCTNLTELHLMSNSIQKIKN--NPFVKQ--KNLITLDLSHNGLSSTKLGTQVQLE-NLQELLLSNNKIQALKSEELDI 167 (680)
T ss_dssp TTTCTTCSEEECCSSCCCCCCS--CTTTTC--TTCCEEECCSSCCSCCCCCSSSCCT-TCCEEECCSSCCCCBCHHHHGG
T ss_pred hccCCCCCEEECCCCccCccCh--hHcccc--CCCCEEECCCCcccccCchhhcccc-cCCEEEccCCcccccCHHHhhc
Confidence 9999999999999999988776 344555 8999999999998876666555544 899999999999888777665
Q ss_pred -cCCCCcEEECCCCCccEEecCCCcCcccchhhhhCCCCCCEEEccCCCCCCccChhh--hhcCCCCcEEEccCCccccc
Q 042537 225 -RMVSLRTLYLGFNELEELFLGKNRLNGTINQWLSRMYKLDALSLSGNSLTGVVTESV--FSELSNLKALHLDDNSFTLK 301 (789)
Q Consensus 225 -~l~~L~~L~L~~n~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~--~~~l~~L~~L~L~~n~i~~~ 301 (789)
.+++|+.|+++ +|.+++..|..|..+++|+.|+++++.+.+...... ....++|++|++++|.+.+.
T Consensus 168 ~~~~~L~~L~L~----------~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~ 237 (680)
T 1ziw_A 168 FANSSLKKLELS----------SNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTT 237 (680)
T ss_dssp GTTCEESEEECT----------TCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEE
T ss_pred cccccccEEECC----------CCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCccccc
Confidence 45777777777 666667778888888899999998888763222111 11347888888888888877
Q ss_pred ccCCCCCccc--ceeEeccCccCCCCCchhccCCCCccEEEccCCcCCCCcchhHhhhccCCCeeeeccccccccCCCCC
Q 042537 302 FSHDWIPPFQ--LIIILLGSCQMGPHFPKWLQTQNQIEVLDISDAGISDTVPDWFWDLSHTIADFNLSNNHIKGKLPNLS 379 (789)
Q Consensus 302 ~~~~~~~~~~--L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~ 379 (789)
.+..+..+.. |+.|++++|.+.+..|.++..+++|++|++++|.+.+..+..+..+ ++|+.|++++|...+.++..
T Consensus 238 ~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~L~~~~~~~~~~~~- 315 (680)
T 1ziw_A 238 SNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGL-FNVRYLNLKRSFTKQSISLA- 315 (680)
T ss_dssp CTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTC-TTCCEEECTTCBCCC------
T ss_pred ChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCC-CCccEEeccchhhhcccccc-
Confidence 7777766644 7777777777776667777777777777777777776666555442 35666666655444322210
Q ss_pred CCCCCCCCEEEccCCcccccCCCCCCCCcEEEcCCCcCccccchhcccCCCCCCEEEcCCCcccc--CCCcccccC--CC
Q 042537 380 LRFDPFSSSIDISSNYFEGLIPPLPSNASVLNLSRNKFSESISFLCSINGHKLEFLDLSNNILSG--RLPDCWMQF--DR 455 (789)
Q Consensus 380 ~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~--~~~~~~~~l--~~ 455 (789)
..+ . +.......+++|+.|++++|++.+..+..+. .+++|++|++++|.+.. .....|..+ ++
T Consensus 316 --~lp---~-------i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~ 382 (680)
T 1ziw_A 316 --SLP---K-------IDDFSFQWLKCLEHLNMEDNDIPGIKSNMFT-GLINLKYLSLSNSFTSLRTLTNETFVSLAHSP 382 (680)
T ss_dssp ---CC---E-------ECTTTTTTCTTCCEEECCSCCBCCCCTTTTT-TCTTCCEEECTTCBSCCCEECTTTTGGGTTSC
T ss_pred --ccc---c-------cChhhcccCCCCCEEECCCCccCCCChhHhc-cccCCcEEECCCCchhhhhcchhhhcccccCc
Confidence 000 0 0000112367899999999999886654333 33889999999987542 233344443 58
Q ss_pred CcEEEcCCCcCcccCCccccccCcccEEEccCCeeeeeCC-cCccCCCCCcEEeCCCCcccccCchhhhhcCCCCcEEEc
Q 042537 456 LAVLSLANNFFSGKIPKSMGFLHSIQTLSLYNNSLIGELP-SFFKSCSQLILMDLGKNGLSGEIPTWIGEGLPKLVVLSL 534 (789)
Q Consensus 456 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~l~~L~~L~L 534 (789)
|+.|++++|++++..|..|..+++|++|++++|.+.+.+| ..|.++++|++|++++|++.+..+.. +..+++|+.|++
T Consensus 383 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~-~~~~~~L~~L~l 461 (680)
T 1ziw_A 383 LHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNS-FALVPSLQRLML 461 (680)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTT-TTTCTTCCEEEC
T ss_pred CceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhh-hhcCcccccchh
Confidence 9999999999998888899999999999999999987665 67889999999999999988444444 447899999999
Q ss_pred CCCccc--ccCCCCccCCCcCceEeccCCcccccCCccccccccCcccCCCccccccCcccccccccccccccceeEEEe
Q 042537 535 KSNKFH--GNIPFQVCQLSYIQILDLSLNNISGIIPKCLNNFTGMAQKSSSNLAITSNYTFERQGIEFLESYVDNVVLTW 612 (789)
Q Consensus 535 ~~n~l~--~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 612 (789)
++|.+. +..|..+..+++|++|++++|++++..+..|..+++|
T Consensus 462 ~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L----------------------------------- 506 (680)
T 1ziw_A 462 RRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKL----------------------------------- 506 (680)
T ss_dssp TTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC-----------------------------------
T ss_pred ccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhcccccc-----------------------------------
Confidence 999886 4678888999999999999999998777777766666
Q ss_pred eccccccccccCceeEEEcccCccccccc--------hhhhccccCcEEEccCCcceeecCcccccCCCCCEEeCCCCcc
Q 042537 613 KGSQHEYRSTLGLVKILDFSMNKLSGTIP--------EEIMDLVGLVALNLSRNNLTGQITPKIDQLKSLDFLDLSQNQF 684 (789)
Q Consensus 613 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p--------~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l 684 (789)
+.|++++|++++..+ ..|.++++|++|+|++|+++...+..|.++++|+.|+|++|++
T Consensus 507 --------------~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l 572 (680)
T 1ziw_A 507 --------------EILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNL 572 (680)
T ss_dssp --------------CEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred --------------CEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCC
Confidence 899999999986422 2378999999999999999955555799999999999999999
Q ss_pred cccCchhhhcCCCCCeEeccCCcccccCCCCC--ccccccccccCCCCCCCCCCC
Q 042537 685 VGGIPSSLCQLSRLSVMNLSYNNLSGKIPLGT--QLQSFNASVYAGNPELCGLPL 737 (789)
Q Consensus 685 ~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~--~~~~~~~~~~~~n~~lc~~~l 737 (789)
++..+..|..+++|++|++++|++++..|..- .+..+....+.||||.|+|+.
T Consensus 573 ~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~ 627 (680)
T 1ziw_A 573 NTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCES 627 (680)
T ss_dssp CCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCC
T ss_pred CcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCcc
Confidence 98888889999999999999999998766421 456677788999999999974
No 5
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=3.2e-55 Score=503.63 Aligned_cols=531 Identities=22% Similarity=0.209 Sum_probs=403.3
Q ss_pred ccCccccCCCCCCEEeCCCCCCCCCCCcccccCCCCCCEEecCCCcCCCCCCccccCCCCCcEEeccCccCCCCcchHHh
Q 042537 66 TISPSLLKLYHLRHLDLSENDFSGSRIPEFIGSLNKLRYLSLSSAEFEGPIPSQLGNLSRLKYLDLSYINLNKSRDWLRI 145 (789)
Q Consensus 66 ~l~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 145 (789)
.+|..+.. ++++|++++|.+++. .|..|+++++|++|+|++|.+.+..|.+|+++++|++|+|++|+++++ .|..
T Consensus 26 ~iP~~l~~--~l~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~--~~~~ 100 (606)
T 3t6q_A 26 EIPGTLPN--STECLEFSFNVLPTI-QNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFM--AETA 100 (606)
T ss_dssp SCCTTSCT--TCCEEECTTCCCSEE-CTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEE--CTTT
T ss_pred cCcCCCCC--cCcEEEccCCccCcC-ChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCccccc--Chhh
Confidence 45555543 789999999999865 678899999999999999999988899999999999999999999875 4678
Q ss_pred hCCCCCCCEEEcCCCCCCCCccccccccccCCCCCCeEEccCCCCCCCchhHHHhhcCCCcEEEccCCCCcccCchhhhc
Q 042537 146 IDKLPSLRTLNLEHCHLPPIIPSDLLHLNFSTSSLGALYLFENSLSSSIYPWLFNISSKLVVLDLDSNLLQGSLLEPFDR 225 (789)
Q Consensus 146 l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~ 225 (789)
|+++++|++|++++|.+++..+ ..+.++ ++|++|++++|.+.+...+.++. .++|++|++++|.+++..+..|+.
T Consensus 101 ~~~l~~L~~L~L~~n~i~~l~~--~~~~~l--~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~L~~n~l~~~~~~~~~~ 175 (606)
T 3t6q_A 101 LSGPKALKHLFFIQTGISSIDF--IPLHNQ--KTLESLYLGSNHISSIKLPKGFP-TEKLKVLDFQNNAIHYLSKEDMSS 175 (606)
T ss_dssp TSSCTTCCEEECTTSCCSCGGG--SCCTTC--TTCCEEECCSSCCCCCCCCTTCC-CTTCCEEECCSSCCCEECHHHHHT
T ss_pred hcccccccEeeccccCcccCCc--chhccC--CcccEEECCCCcccccCcccccC-CcccCEEEcccCcccccChhhhhh
Confidence 9999999999999999988766 334555 88888888888887643344444 448889999998888888888888
Q ss_pred CCCCc--EEECCCCCccEEecCCCcCcccchhhhhCCCCCCEEEccCCCCCCccChhhhhcCCCCcEEEccCCccccccc
Q 042537 226 MVSLR--TLYLGFNELEELFLGKNRLNGTINQWLSRMYKLDALSLSGNSLTGVVTESVFSELSNLKALHLDDNSFTLKFS 303 (789)
Q Consensus 226 l~~L~--~L~L~~n~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~ 303 (789)
+++|+ .|+++ +|.+.+..|..|.. .+|++|++++|.. ++. .+..+.+++...+....+.....
T Consensus 176 l~~L~~l~L~l~----------~n~l~~~~~~~~~~-~~L~~L~l~~~~~---~~~-~~~~l~~~~l~~l~~~~~~~~~~ 240 (606)
T 3t6q_A 176 LQQATNLSLNLN----------GNDIAGIEPGAFDS-AVFQSLNFGGTQN---LLV-IFKGLKNSTIQSLWLGTFEDMDD 240 (606)
T ss_dssp TTTCCSEEEECT----------TCCCCEECTTTTTT-CEEEEEECTTCSC---HHH-HHHHTTTCEEEEEECCCCTTSCC
T ss_pred hcccceeEEecC----------CCccCccChhHhhh-ccccccccCCchh---HHH-Hhhhccccchhheechhhccccc
Confidence 88888 67777 55555555665544 5788888888862 222 46666665554444332221111
Q ss_pred CCCCCcccceeEeccCccCCCCCchhccCCC--CccEEEccCCcCCCCcchhHhhhccCCCeeeeccccccccCCCCCCC
Q 042537 304 HDWIPPFQLIIILLGSCQMGPHFPKWLQTQN--QIEVLDISDAGISDTVPDWFWDLSHTIADFNLSNNHIKGKLPNLSLR 381 (789)
Q Consensus 304 ~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~--~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~ 381 (789)
. ...+..+..+. +|+.+++++|.+++..+..|.. .++|+.|++++|.++ .+|. .+.
T Consensus 241 ~-------------------~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~-l~~L~~L~l~~n~l~-~lp~-~l~ 298 (606)
T 3t6q_A 241 E-------------------DISPAVFEGLCEMSVESINLQKHYFFNISSNTFHC-FSGLQELDLTATHLS-ELPS-GLV 298 (606)
T ss_dssp C-------------------CCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTT-CTTCSEEECTTSCCS-CCCS-SCC
T ss_pred c-------------------ccChhHhchhhcCceeEEEeecCccCccCHHHhcc-ccCCCEEeccCCccC-CCCh-hhc
Confidence 0 01122222222 5666666666665544443333 234555555555554 3443 334
Q ss_pred CCCCCCEEEccCCcccccCCCCCCCCcEEEcCCCcCccccchhcccCCCCCCEEEcCCCccccCCCc-ccccCCCCcEEE
Q 042537 382 FDPFSSSIDISSNYFEGLIPPLPSNASVLNLSRNKFSESISFLCSINGHKLEFLDLSNNILSGRLPD-CWMQFDRLAVLS 460 (789)
Q Consensus 382 ~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~ 460 (789)
.++.|++|++ ++|++.+..+.... .+++|++|++++|.+.+.++. .+..+++|++|+
T Consensus 299 ~l~~L~~L~l---------------------~~n~l~~~~~~~~~-~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ 356 (606)
T 3t6q_A 299 GLSTLKKLVL---------------------SANKFENLCQISAS-NFPSLTHLSIKGNTKRLELGTGCLENLENLRELD 356 (606)
T ss_dssp SCTTCCEEEC---------------------TTCCCSBGGGGCGG-GCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEE
T ss_pred ccccCCEEEC---------------------ccCCcCcCchhhhh-ccCcCCEEECCCCCcccccchhhhhccCcCCEEE
Confidence 4444444444 44444443332211 227899999999988866554 588999999999
Q ss_pred cCCCcCcccC--CccccccCcccEEEccCCeeeeeCCcCccCCCCCcEEeCCCCcccccCchhhhhcCCCCcEEEcCCCc
Q 042537 461 LANNFFSGKI--PKSMGFLHSIQTLSLYNNSLIGELPSFFKSCSQLILMDLGKNGLSGEIPTWIGEGLPKLVVLSLKSNK 538 (789)
Q Consensus 461 L~~n~l~~~~--~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~ 538 (789)
+++|.+++.. +..+..+++|++|++++|++.+..|..|..+++|++|++++|++.+..+...+..+++|++|++++|.
T Consensus 357 l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~ 436 (606)
T 3t6q_A 357 LSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSL 436 (606)
T ss_dssp CCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCC
T ss_pred CCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCc
Confidence 9999998766 77889999999999999999999999999999999999999999877666655579999999999999
Q ss_pred ccccCCCCccCCCcCceEeccCCcccccC---CccccccccCcccCCCccccccCcccccccccccccccceeEEEeecc
Q 042537 539 FHGNIPFQVCQLSYIQILDLSLNNISGII---PKCLNNFTGMAQKSSSNLAITSNYTFERQGIEFLESYVDNVVLTWKGS 615 (789)
Q Consensus 539 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~---p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 615 (789)
+.+..|..+..+++|++|++++|++++.. +..+..+
T Consensus 437 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l----------------------------------------- 475 (606)
T 3t6q_A 437 LDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTL----------------------------------------- 475 (606)
T ss_dssp CBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGC-----------------------------------------
T ss_pred cCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccC-----------------------------------------
Confidence 99888989999999999999999998632 2334444
Q ss_pred ccccccccCceeEEEcccCccccccchhhhccccCcEEEccCCcceeecCcccccCCCCCEEeCCCCcccccCchhhhcC
Q 042537 616 QHEYRSTLGLVKILDFSMNKLSGTIPEEIMDLVGLVALNLSRNNLTGQITPKIDQLKSLDFLDLSQNQFVGGIPSSLCQL 695 (789)
Q Consensus 616 ~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l 695 (789)
+.|+.|++++|++++..|..|..+++|++|+|++|++++.+|..+.++++| .|++++|++++.+|..+..+
T Consensus 476 --------~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l 546 (606)
T 3t6q_A 476 --------GRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPIL 546 (606)
T ss_dssp --------TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHH
T ss_pred --------CCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccC
Confidence 445999999999999999999999999999999999999999999999999 99999999999999999999
Q ss_pred CCCCeEeccCCcccccCCCC
Q 042537 696 SRLSVMNLSYNNLSGKIPLG 715 (789)
Q Consensus 696 ~~L~~L~ls~N~l~~~~p~~ 715 (789)
++|++|++++|++.|.++..
T Consensus 547 ~~L~~L~l~~N~~~c~c~~~ 566 (606)
T 3t6q_A 547 SQQRTINLRQNPLDCTCSNI 566 (606)
T ss_dssp HTSSEEECTTCCEECSGGGH
T ss_pred CCCCEEeCCCCCccccCCcH
Confidence 99999999999999988853
No 6
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=6.7e-54 Score=492.61 Aligned_cols=530 Identities=21% Similarity=0.179 Sum_probs=403.4
Q ss_pred ccCccccCCCCCCEEeCCCCCCCCCCCcccccCCCCCCEEecCCCcCCCCCCccccCCCCCcEEeccCccCCCCcchHHh
Q 042537 66 TISPSLLKLYHLRHLDLSENDFSGSRIPEFIGSLNKLRYLSLSSAEFEGPIPSQLGNLSRLKYLDLSYINLNKSRDWLRI 145 (789)
Q Consensus 66 ~l~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 145 (789)
.+|..+. +++++|++++|.+++. .+..|+++++|++|++++|.+++..|.+|.++++|++|+|++|+++++ .|..
T Consensus 25 ~ip~~~~--~~l~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~--~p~~ 99 (606)
T 3vq2_A 25 KVPDDIP--SSTKNIDLSFNPLKIL-KSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSF--SPGS 99 (606)
T ss_dssp SCCTTSC--TTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCC--CTTS
T ss_pred cCCCCCC--CCcCEEECCCCCcCEe-ChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCccccc--Chhh
Confidence 5565554 7899999999999865 566889999999999999999988888999999999999999999885 4688
Q ss_pred hCCCCCCCEEEcCCCCCCCCccccccccccCCCCCCeEEccCCCCCC-CchhHHHhhcCCCcEEEccCCCCcccCchhhh
Q 042537 146 IDKLPSLRTLNLEHCHLPPIIPSDLLHLNFSTSSLGALYLFENSLSS-SIYPWLFNISSKLVVLDLDSNLLQGSLLEPFD 224 (789)
Q Consensus 146 l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~~~L~~L~l~~n~l~~-~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~ 224 (789)
|+++++|++|++++|.+.+..+ ..+.++ ++|++|++++|.+.+ .+|..+.++. +|++|++++|.+++..+..|+
T Consensus 100 ~~~l~~L~~L~L~~n~l~~~~~--~~~~~l--~~L~~L~L~~n~l~~~~lp~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~ 174 (606)
T 3vq2_A 100 FSGLTSLENLVAVETKLASLES--FPIGQL--ITLKKLNVAHNFIHSCKLPAYFSNLT-NLVHVDLSYNYIQTITVNDLQ 174 (606)
T ss_dssp STTCTTCCEEECTTSCCCCSSS--SCCTTC--TTCCEEECCSSCCCCCCCCGGGGTCT-TCCEEECCSSCCCEECTTTTH
T ss_pred cCCcccCCEEEccCCccccccc--cccCCC--CCCCEEeCCCCcccceechHhHhhcC-CCCEEEccCCcceecChhhhh
Confidence 9999999999999999988776 345556 899999999999876 5677776665 899999999999988888777
Q ss_pred cCCCCc----EEECCCCCccEEecCCCcCcccchhhhhCCCCCCEEEccCCCCCCccChhhhhcCCCCcEEEccCCcccc
Q 042537 225 RMVSLR----TLYLGFNELEELFLGKNRLNGTINQWLSRMYKLDALSLSGNSLTGVVTESVFSELSNLKALHLDDNSFTL 300 (789)
Q Consensus 225 ~l~~L~----~L~L~~n~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~ 300 (789)
.+++|+ .|+++ +|.+++..+..+... +|++|++++|.+.+......+.++++|+.+++..+.+..
T Consensus 175 ~l~~L~~~l~~L~l~----------~n~l~~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~ 243 (606)
T 3vq2_A 175 FLRENPQVNLSLDMS----------LNPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKD 243 (606)
T ss_dssp HHHHCTTCCCEEECT----------TCCCCEECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTT
T ss_pred hhhccccccceeecc----------CCCcceeCcccccCc-eeeeeeccCCccchhHHHHHhcccccccccccccccccc
Confidence 776655 67777 455554455555554 899999999988755555578889999988887655442
Q ss_pred cccCCCCCcccceeEeccCccCCCCCchhccCCCCccEEEc-cCCcCCCCcchhHhhhccCCCeeeeccccccccCCCCC
Q 042537 301 KFSHDWIPPFQLIIILLGSCQMGPHFPKWLQTQNQIEVLDI-SDAGISDTVPDWFWDLSHTIADFNLSNNHIKGKLPNLS 379 (789)
Q Consensus 301 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l-s~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~ 379 (789)
...... +....+..+..+ .++.+++ ..+.+.+..|. + ...++|+.|++++|.+. .+| .
T Consensus 244 ~~~l~~---------------~~~~~~~~l~~l-~l~~l~l~~~~~~~~~~~~-~-~~l~~L~~L~l~~~~~~-~l~--~ 302 (606)
T 3vq2_A 244 ERNLEI---------------FEPSIMEGLCDV-TIDEFRLTYTNDFSDDIVK-F-HCLANVSAMSLAGVSIK-YLE--D 302 (606)
T ss_dssp SCCCSC---------------CCGGGGTTGGGS-EEEEEEECCCTTCCGGGGS-C-GGGTTCSEEEEESCCCC-CCC--C
T ss_pred CCcccc---------------cChHHhhhhhhc-cHhheeccccccccccccc-c-ccCCCCCEEEecCccch-hhh--h
Confidence 211100 000011111111 3444555 44445544444 2 22345555555555553 233 2
Q ss_pred CCCCCCCCEEEccCCcccccCCCCCCCCcEEEcCCCcCccccchhcccCCCCCCEEEcCCCccccCCCcccccCCCCcEE
Q 042537 380 LRFDPFSSSIDISSNYFEGLIPPLPSNASVLNLSRNKFSESISFLCSINGHKLEFLDLSNNILSGRLPDCWMQFDRLAVL 459 (789)
Q Consensus 380 ~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 459 (789)
+..++ +|+.|++++|++.. ++.. .+++|++|++++|...+.. .+..+++|++|
T Consensus 303 l~~~~---------------------~L~~L~l~~n~l~~-lp~~---~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L 355 (606)
T 3vq2_A 303 VPKHF---------------------KWQSLSIIRCQLKQ-FPTL---DLPFLKSLTLTMNKGSISF--KKVALPSLSYL 355 (606)
T ss_dssp CCTTC---------------------CCSEEEEESCCCSS-CCCC---CCSSCCEEEEESCSSCEEC--CCCCCTTCCEE
T ss_pred ccccc---------------------cCCEEEcccccCcc-cccC---CCCccceeeccCCcCccch--hhccCCCCCEE
Confidence 33333 44444444444422 2221 2278888888888654433 56788999999
Q ss_pred EcCCCcCccc--CCccccccCcccEEEccCCeeeeeCCcCccCCCCCcEEeCCCCcccccCchhhhhcCCCCcEEEcCCC
Q 042537 460 SLANNFFSGK--IPKSMGFLHSIQTLSLYNNSLIGELPSFFKSCSQLILMDLGKNGLSGEIPTWIGEGLPKLVVLSLKSN 537 (789)
Q Consensus 460 ~L~~n~l~~~--~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~l~~L~~L~L~~n 537 (789)
++++|++++. .|..+..+++|++|++++|.+.+ +|..+..+++|+.|++++|++.+..|...+..+++|++|++++|
T Consensus 356 ~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n 434 (606)
T 3vq2_A 356 DLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYT 434 (606)
T ss_dssp ECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTS
T ss_pred ECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCC
Confidence 9999998866 37788889999999999999885 45788999999999999999996666344447999999999999
Q ss_pred cccccCCCCccCCCcCceEeccCCcccc-cCCccccccccCcccCCCccccccCcccccccccccccccceeEEEeeccc
Q 042537 538 KFHGNIPFQVCQLSYIQILDLSLNNISG-IIPKCLNNFTGMAQKSSSNLAITSNYTFERQGIEFLESYVDNVVLTWKGSQ 616 (789)
Q Consensus 538 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 616 (789)
++.+..|..+..+++|++|++++|++++ ..|..+..+++|
T Consensus 435 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L--------------------------------------- 475 (606)
T 3vq2_A 435 NTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNL--------------------------------------- 475 (606)
T ss_dssp CCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTC---------------------------------------
T ss_pred CCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCC---------------------------------------
Confidence 9998889999999999999999999987 467777666655
Q ss_pred cccccccCceeEEEcccCccccccchhhhccccCcEEEccCCcceeecCcccccCCCCCEEeCCCCcccccCchhhhcCC
Q 042537 617 HEYRSTLGLVKILDFSMNKLSGTIPEEIMDLVGLVALNLSRNNLTGQITPKIDQLKSLDFLDLSQNQFVGGIPSSLCQLS 696 (789)
Q Consensus 617 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~ 696 (789)
+.|++++|++++..|..|..+++|++|+|++|++++.+|..+..+++|+.|||++|+++ .+|..+..++
T Consensus 476 ----------~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~ 544 (606)
T 3vq2_A 476 ----------TFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFP 544 (606)
T ss_dssp ----------CEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSC
T ss_pred ----------CEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhc
Confidence 89999999999999999999999999999999999988999999999999999999999 6777799997
Q ss_pred -CCCeEeccCCcccccCCCC
Q 042537 697 -RLSVMNLSYNNLSGKIPLG 715 (789)
Q Consensus 697 -~L~~L~ls~N~l~~~~p~~ 715 (789)
+|++|++++|++.|.++..
T Consensus 545 ~~L~~l~l~~N~~~c~c~~~ 564 (606)
T 3vq2_A 545 KSLAFFNLTNNSVACICEHQ 564 (606)
T ss_dssp TTCCEEECCSCCCCCSSTTH
T ss_pred ccCcEEEccCCCcccCCccH
Confidence 5999999999999988864
No 7
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=1.8e-53 Score=489.00 Aligned_cols=534 Identities=19% Similarity=0.167 Sum_probs=382.7
Q ss_pred EEeCCCCCCCCCCCcccccCCCCCCEEecCCCcCCCCCCccccCCCCCcEEeccCccCCCCcchHHhhCCCCCCCEEEcC
Q 042537 79 HLDLSENDFSGSRIPEFIGSLNKLRYLSLSSAEFEGPIPSQLGNLSRLKYLDLSYINLNKSRDWLRIIDKLPSLRTLNLE 158 (789)
Q Consensus 79 ~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~ 158 (789)
.++.++..++ .+|..+. +++++|++++|.+++..|.+|+++++|++|+|++|+++++ .|..|+++++|++|+++
T Consensus 16 ~~~c~~~~l~--~iP~~l~--~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~--~~~~~~~l~~L~~L~Ls 89 (606)
T 3t6q_A 16 TYNCENLGLN--EIPGTLP--NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWI--HEDTFQSQHRLDTLVLT 89 (606)
T ss_dssp EEECTTSCCS--SCCTTSC--TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEE--CTTTTTTCTTCCEEECT
T ss_pred eEECCCCCcc--cCcCCCC--CcCcEEEccCCccCcCChhHhccCccceEEECCCCcccee--ChhhccCccccCeeeCC
Confidence 5666677777 4677665 4799999999999988899999999999999999999885 46889999999999999
Q ss_pred CCCCCCCccccccccccCCCCCCeEEccCCCCCCCchhHHHhhcCCCcEEEccCCCCcccCchhhhcCCCCcEEECCCCC
Q 042537 159 HCHLPPIIPSDLLHLNFSTSSLGALYLFENSLSSSIYPWLFNISSKLVVLDLDSNLLQGSLLEPFDRMVSLRTLYLGFNE 238 (789)
Q Consensus 159 ~n~l~~~~~~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~ 238 (789)
+|.+.+..|. .+.++ ++|++|++++|.+++..+..+..+ ++|++|++++|.+.+.....+..
T Consensus 90 ~n~l~~~~~~--~~~~l--~~L~~L~L~~n~i~~l~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~------------- 151 (606)
T 3t6q_A 90 ANPLIFMAET--ALSGP--KALKHLFFIQTGISSIDFIPLHNQ-KTLESLYLGSNHISSIKLPKGFP------------- 151 (606)
T ss_dssp TCCCSEECTT--TTSSC--TTCCEEECTTSCCSCGGGSCCTTC-TTCCEEECCSSCCCCCCCCTTCC-------------
T ss_pred CCcccccChh--hhccc--ccccEeeccccCcccCCcchhccC-CcccEEECCCCcccccCcccccC-------------
Confidence 9999877663 33333 555555555555543222222222 24555555555444433223333
Q ss_pred ccEEecCCCcCcccchhhhhCCCCCCEEEccCCCCCCccChhhhhcCCCCc--EEEccCCcccccccCCCCCcccceeEe
Q 042537 239 LEELFLGKNRLNGTINQWLSRMYKLDALSLSGNSLTGVVTESVFSELSNLK--ALHLDDNSFTLKFSHDWIPPFQLIIIL 316 (789)
Q Consensus 239 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~--~L~L~~n~i~~~~~~~~~~~~~L~~L~ 316 (789)
+++|++|++++|.++ .++...|..+++|+ +|++++|.+.+..+..+. ...|+.++
T Consensus 152 ---------------------l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~-~~~L~~L~ 208 (606)
T 3t6q_A 152 ---------------------TEKLKVLDFQNNAIH-YLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFD-SAVFQSLN 208 (606)
T ss_dssp ---------------------CTTCCEEECCSSCCC-EECHHHHHTTTTCCSEEEECTTCCCCEECTTTTT-TCEEEEEE
T ss_pred ---------------------CcccCEEEcccCccc-ccChhhhhhhcccceeEEecCCCccCccChhHhh-hccccccc
Confidence 445555555555554 23233444555554 445555554443333322 23455555
Q ss_pred ccCccCCCCCchhccCCCCccEEEccCCcCC-----CCcchhHhhhc-cCCCeeeeccccccccCCCCCCCCCCCCCEEE
Q 042537 317 LGSCQMGPHFPKWLQTQNQIEVLDISDAGIS-----DTVPDWFWDLS-HTIADFNLSNNHIKGKLPNLSLRFDPFSSSID 390 (789)
Q Consensus 317 l~~~~~~~~~~~~l~~l~~L~~L~ls~n~i~-----~~~~~~~~~~~-~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~ 390 (789)
+++|. ..+..+..+..++...+....+. ...+..+.... .+++.|++++|.+++..+. .+..+++|++|+
T Consensus 209 l~~~~---~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~ 284 (606)
T 3t6q_A 209 FGGTQ---NLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSN-TFHCFSGLQELD 284 (606)
T ss_dssp CTTCS---CHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTT-TTTTCTTCSEEE
T ss_pred cCCch---hHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHH-HhccccCCCEEe
Confidence 55543 33444444444443333322221 11122222211 1466666666666533222 455555555555
Q ss_pred ccCCcccccCCCCCCCCcEEEcCCCcCccccchhcccCCCCCCEEEcCCCccccCCCcccccCCCCcEEEcCCCcCcccC
Q 042537 391 ISSNYFEGLIPPLPSNASVLNLSRNKFSESISFLCSINGHKLEFLDLSNNILSGRLPDCWMQFDRLAVLSLANNFFSGKI 470 (789)
Q Consensus 391 l~~n~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 470 (789)
+++|.+ +..+.... .+++|++|++++|.+++..|..+..+++|+.|++++|.+.+.+
T Consensus 285 l~~n~l---------------------~~lp~~l~--~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 341 (606)
T 3t6q_A 285 LTATHL---------------------SELPSGLV--GLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLEL 341 (606)
T ss_dssp CTTSCC---------------------SCCCSSCC--SCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBC
T ss_pred ccCCcc---------------------CCCChhhc--ccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCccccc
Confidence 555544 43332221 2288999999999999888889999999999999999998655
Q ss_pred Cc-cccccCcccEEEccCCeeeeeC--CcCccCCCCCcEEeCCCCcccccCchhhhhcCCCCcEEEcCCCcccccCCC-C
Q 042537 471 PK-SMGFLHSIQTLSLYNNSLIGEL--PSFFKSCSQLILMDLGKNGLSGEIPTWIGEGLPKLVVLSLKSNKFHGNIPF-Q 546 (789)
Q Consensus 471 ~~-~~~~l~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~-~ 546 (789)
|. .+..+++|++|++++|.+.+.. +..+..+++|++|++++|++.+..|..+. .+++|++|++++|++.+..+. .
T Consensus 342 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~ 420 (606)
T 3t6q_A 342 GTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFK-ECPQLELLDLAFTRLKVKDAQSP 420 (606)
T ss_dssp CSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTT-TCTTCSEEECTTCCEECCTTCCT
T ss_pred chhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhc-CCccCCeEECCCCcCCCcccchh
Confidence 54 5889999999999999998776 78899999999999999999966666555 799999999999999977655 4
Q ss_pred ccCCCcCceEeccCCcccccCCccccccccCcccCCCccccccCcccccccccccccccceeEEEeeccccccccccCce
Q 042537 547 VCQLSYIQILDLSLNNISGIIPKCLNNFTGMAQKSSSNLAITSNYTFERQGIEFLESYVDNVVLTWKGSQHEYRSTLGLV 626 (789)
Q Consensus 547 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L 626 (789)
+..+++|++|++++|.+++..|..+..+++|
T Consensus 421 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L------------------------------------------------- 451 (606)
T 3t6q_A 421 FQNLHLLKVLNLSHSLLDISSEQLFDGLPAL------------------------------------------------- 451 (606)
T ss_dssp TTTCTTCCEEECTTCCCBTTCTTTTTTCTTC-------------------------------------------------
T ss_pred hhCcccCCEEECCCCccCCcCHHHHhCCCCC-------------------------------------------------
Confidence 8899999999999999998888877776666
Q ss_pred eEEEcccCccccc---cchhhhccccCcEEEccCCcceeecCcccccCCCCCEEeCCCCcccccCchhhhcCCCCCeEec
Q 042537 627 KILDFSMNKLSGT---IPEEIMDLVGLVALNLSRNNLTGQITPKIDQLKSLDFLDLSQNQFVGGIPSSLCQLSRLSVMNL 703 (789)
Q Consensus 627 ~~L~Ls~N~l~~~---~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l 703 (789)
+.|++++|++++. .+..+..+++|++|++++|++++.+|..|..+++|+.|+|++|++++..|..+..++.| +|++
T Consensus 452 ~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L 530 (606)
T 3t6q_A 452 QHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNL 530 (606)
T ss_dssp CEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEEC
T ss_pred CEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEEC
Confidence 8999999999873 33679999999999999999999999999999999999999999999999999999999 9999
Q ss_pred cCCcccccCCCC-CccccccccccCCCCCCCCCCC
Q 042537 704 SYNNLSGKIPLG-TQLQSFNASVYAGNPELCGLPL 737 (789)
Q Consensus 704 s~N~l~~~~p~~-~~~~~~~~~~~~~n~~lc~~~l 737 (789)
++|++++..|.. ..+..+....+.|||+.|+|+.
T Consensus 531 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~ 565 (606)
T 3t6q_A 531 ASNHISIILPSLLPILSQQRTINLRQNPLDCTCSN 565 (606)
T ss_dssp CSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGGG
T ss_pred cCCcccccCHhhcccCCCCCEEeCCCCCccccCCc
Confidence 999999877753 3456677778999999998863
No 8
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=1.1e-53 Score=506.69 Aligned_cols=562 Identities=21% Similarity=0.224 Sum_probs=349.1
Q ss_pred CceeeeEecCCCCcEEEEEcCCCCCCCCcccccCccccCCCCCCEEeCCCCCCCCCCCcccccCCCCCCEEecCCCcCCC
Q 042537 35 CYWRGVRCSNTTGHVIVLDLQVLVHSEPLKGTISPSLLKLYHLRHLDLSENDFSGSRIPEFIGSLNKLRYLSLSSAEFEG 114 (789)
Q Consensus 35 c~w~gv~c~~~~~~v~~l~L~~~~~~~~l~~~l~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~i~~ 114 (789)
|.|.+|++ ...++++|||++ +.+.+..+.+|.++++|++|++++|...+...|..|.++++|++|+|++|.+.+
T Consensus 14 ~~L~~vP~--lp~~l~~LdLs~----N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~ 87 (844)
T 3j0a_A 14 CNLTQVPQ--VLNTTERLLLSF----NYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYF 87 (844)
T ss_dssp CCSSCCCS--SCTTCCEEEEES----CCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCE
T ss_pred CCCCCCCC--CCCCcCEEECCC----CcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcc
Confidence 44555544 334555566655 455555555555666666666655543322124555555666666666665555
Q ss_pred CCCccccCCCCCcEEeccCccCCCCcchHH--hhCCCCCCCEEEcCCCCCCCCccccccccccCCCCCCeEEccCCCCCC
Q 042537 115 PIPSQLGNLSRLKYLDLSYINLNKSRDWLR--IIDKLPSLRTLNLEHCHLPPIIPSDLLHLNFSTSSLGALYLFENSLSS 192 (789)
Q Consensus 115 ~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~--~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~~~L~~L~l~~n~l~~ 192 (789)
..|.+|+++++|++|+|++|.+++. .|. .++++++|++|++++|.+.+..+. ..+.++ ++|++|++++|.+++
T Consensus 88 ~~p~~~~~l~~L~~L~Ls~n~l~~~--~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~-~~~~~L--~~L~~L~Ls~N~i~~ 162 (844)
T 3j0a_A 88 LHPDAFQGLFHLFELRLYFCGLSDA--VLKDGYFRNLKALTRLDLSKNQIRSLYLH-PSFGKL--NSLKSIDFSSNQIFL 162 (844)
T ss_dssp ECTTSSCSCSSCCCEECTTCCCSSC--CSTTCCCSSCSSCCEEEEESCCCCCCCCC-GGGGTC--SSCCEEEEESSCCCC
T ss_pred cCHhHccCCcccCEeeCcCCCCCcc--cccCccccccCCCCEEECCCCcccccccc-hhHhhC--CCCCEEECCCCcCCe
Confidence 5555555566666666665555542 112 255555555555555555543321 122333 555555555555544
Q ss_pred CchhHHHhhc-CCCcEEEccCCCCcccCchhhhcCCCCcEEECCCCCccEEecCCCcCcccchhhhhCCCCCCEEEccCC
Q 042537 193 SIYPWLFNIS-SKLVVLDLDSNLLQGSLLEPFDRMVSLRTLYLGFNELEELFLGKNRLNGTINQWLSRMYKLDALSLSGN 271 (789)
Q Consensus 193 ~~~~~~~~~~-~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n 271 (789)
..+..+..+. ++|+.|++++|.+.+..+..+..+++ .+.+ .+|++|++++|
T Consensus 163 ~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~---------------------------~~~~-~~L~~L~Ls~n 214 (844)
T 3j0a_A 163 VCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMN---------------------------PFRN-MVLEILDVSGN 214 (844)
T ss_dssp CCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSC---------------------------TTTT-CCBSEEBCSSC
T ss_pred eCHHHcccccCCccceEECCCCccccccccchhhcCC---------------------------cccc-CceeEEecCCC
Confidence 4444433321 24555555555554444443333322 0000 02455555555
Q ss_pred CCCCccChhhhhc--CCCCcEEEccC---------CcccccccCCCCCc--ccceeEeccCccCCCCCchhccCCCCccE
Q 042537 272 SLTGVVTESVFSE--LSNLKALHLDD---------NSFTLKFSHDWIPP--FQLIIILLGSCQMGPHFPKWLQTQNQIEV 338 (789)
Q Consensus 272 ~l~~~~~~~~~~~--l~~L~~L~L~~---------n~i~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~l~~l~~L~~ 338 (789)
.+.+.++...... .++++.+.++. +.+.......+.++ .+|+.|++++|.+.+..+..+..+++|+.
T Consensus 215 ~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 294 (844)
T 3j0a_A 215 GWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKV 294 (844)
T ss_dssp CSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCE
T ss_pred cCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCE
Confidence 4443333321111 13344444442 22222223333332 56777777777777777778888888889
Q ss_pred EEccCCcCCCCcchhHhhhccCCCeeeeccccccccCCCCCCCCCCCCCEEEccCCcccccCCCCCCCCcEEEcCCCcCc
Q 042537 339 LDISDAGISDTVPDWFWDLSHTIADFNLSNNHIKGKLPNLSLRFDPFSSSIDISSNYFEGLIPPLPSNASVLNLSRNKFS 418 (789)
Q Consensus 339 L~ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~i~ 418 (789)
|++++|.+.+..+..|..+ ++|+.|++++|.++ +..+..+..
T Consensus 295 L~L~~n~i~~~~~~~~~~l-~~L~~L~Ls~N~l~-------------------------~~~~~~~~~------------ 336 (844)
T 3j0a_A 295 LNLAYNKINKIADEAFYGL-DNLQVLNLSYNLLG-------------------------ELYSSNFYG------------ 336 (844)
T ss_dssp EEEESCCCCEECTTTTTTC-SSCCEEEEESCCCS-------------------------CCCSCSCSS------------
T ss_pred EECCCCcCCCCChHHhcCC-CCCCEEECCCCCCC-------------------------ccCHHHhcC------------
Confidence 9998888876665544332 24444444444443 222221111
Q ss_pred cccchhcccCCCCCCEEEcCCCccccCCCcccccCCCCcEEEcCCCcCcccCCccccccCcccEEEccCCeeeeeCCcCc
Q 042537 419 ESISFLCSINGHKLEFLDLSNNILSGRLPDCWMQFDRLAVLSLANNFFSGKIPKSMGFLHSIQTLSLYNNSLIGELPSFF 498 (789)
Q Consensus 419 ~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 498 (789)
+++|+.|++++|.+.+..+..|..+++|+.|++++|.+++. ..+++|+.|++++|+++. +|..
T Consensus 337 ----------l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i-----~~~~~L~~L~l~~N~l~~-l~~~- 399 (844)
T 3j0a_A 337 ----------LPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTI-----HFIPSIPDIFLSGNKLVT-LPKI- 399 (844)
T ss_dssp ----------CTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCC-----SSCCSCSEEEEESCCCCC-CCCC-
T ss_pred ----------CCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcc-----cCCCCcchhccCCCCccc-cccc-
Confidence 16788888888888877777888899999999999998843 237889999999999883 4433
Q ss_pred cCCCCCcEEeCCCCcccccCch-hhhhcCCCCcEEEcCCCcccccCCC-CccCCCcCceEeccCCcccccCCcccccccc
Q 042537 499 KSCSQLILMDLGKNGLSGEIPT-WIGEGLPKLVVLSLKSNKFHGNIPF-QVCQLSYIQILDLSLNNISGIIPKCLNNFTG 576 (789)
Q Consensus 499 ~~l~~L~~L~ls~n~l~~~~p~-~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 576 (789)
..+++.|++++|++. .++. .....+++|+.|++++|++++..+. .+..+++|+.|++++|.+++..+..+.
T Consensus 400 --~~~l~~L~ls~N~l~-~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~---- 472 (844)
T 3j0a_A 400 --NLTANLIHLSENRLE-NLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELC---- 472 (844)
T ss_dssp --CTTCCEEECCSCCCC-SSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCC----
T ss_pred --ccccceeecccCccc-cCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccc----
Confidence 568899999999998 4433 2333689999999999999865443 456689999999999998744322110
Q ss_pred CcccCCCccccccCcccccccccccccccceeEEEeeccccccccccCceeEEEcccCccccccchhhhccccCcEEEcc
Q 042537 577 MAQKSSSNLAITSNYTFERQGIEFLESYVDNVVLTWKGSQHEYRSTLGLVKILDFSMNKLSGTIPEEIMDLVGLVALNLS 656 (789)
Q Consensus 577 L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls 656 (789)
......++.|+.|+|++|++++..|..|..+++|++|+|+
T Consensus 473 ----------------------------------------~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 512 (844)
T 3j0a_A 473 ----------------------------------------WDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLN 512 (844)
T ss_dssp ----------------------------------------SSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEE
T ss_pred ----------------------------------------hhhhcCcccccEEECCCCcccccChhHccchhhhheeECC
Confidence 0011234556999999999999999999999999999999
Q ss_pred CCcceeecCcccccCCCCCEEeCCCCcccccCchhhhcCCCCCeEeccCCcccccCCCCCccccccccccCCCCCCCCCC
Q 042537 657 RNNLTGQITPKIDQLKSLDFLDLSQNQFVGGIPSSLCQLSRLSVMNLSYNNLSGKIPLGTQLQSFNASVYAGNPELCGLP 736 (789)
Q Consensus 657 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~n~~lc~~~ 736 (789)
+|++++..|..+. ++|+.|||++|++++.+|..| .+|+.+++++|++.|.++...... ....++...|+.+
T Consensus 513 ~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~---~~L~~l~l~~Np~~C~c~~~~f~~----~~~~~~~~~~~~~ 583 (844)
T 3j0a_A 513 SNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVF---VSLSVLDITHNKFICECELSTFIN----WLNHTNVTIAGPP 583 (844)
T ss_dssp SCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCC---SSCCEEEEEEECCCCSSSCCSHHH----HHHHTTTTTCCCG
T ss_pred CCCCCccChhhhh--ccccEEECCCCcCCCCChhHh---CCcCEEEecCCCcccccccHHHHH----HHHhcCccccccc
Confidence 9999977776666 899999999999999999775 478999999999999988543222 1224556677777
Q ss_pred CCCCCCCCCC
Q 042537 737 LRNKCPDEDS 746 (789)
Q Consensus 737 l~~~c~~~~~ 746 (789)
....|..+..
T Consensus 584 ~~~~C~~p~~ 593 (844)
T 3j0a_A 584 ADIYCVYPDS 593 (844)
T ss_dssp GGCCCSSCSS
T ss_pred ccCccCCchh
Confidence 7677866544
No 9
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=1.2e-52 Score=482.29 Aligned_cols=531 Identities=19% Similarity=0.176 Sum_probs=389.7
Q ss_pred CCEEeCCCCCCCCCCCcccccCCCCCCEEecCCCcCCCCCCccccCCCCCcEEeccCccCCCCcchHHhhCCCCCCCEEE
Q 042537 77 LRHLDLSENDFSGSRIPEFIGSLNKLRYLSLSSAEFEGPIPSQLGNLSRLKYLDLSYINLNKSRDWLRIIDKLPSLRTLN 156 (789)
Q Consensus 77 L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~ 156 (789)
-++++.++++++ .+|..+. ++|++|++++|.+++..+.+|.++++|++|++++|+++++ .|..|+++++|++|+
T Consensus 13 ~~~~~c~~~~l~--~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i--~~~~~~~l~~L~~L~ 86 (606)
T 3vq2_A 13 NITYQCMDQKLS--KVPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETI--EDKAWHGLHHLSNLI 86 (606)
T ss_dssp TTEEECTTSCCS--SCCTTSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEE--CTTTTTTCTTCCEEE
T ss_pred CCceEccCCCcc--cCCCCCC--CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCccccc--CHHHhhchhhcCEeE
Confidence 357888888888 4676654 8999999999999988888999999999999999999885 357889999999999
Q ss_pred cCCCCCCCCccccccccccCCCCCCeEEccCCCCCCCchhHHHhhcCCCcEEEccCCCCcccCchhhhcCCCCcEEECCC
Q 042537 157 LEHCHLPPIIPSDLLHLNFSTSSLGALYLFENSLSSSIYPWLFNISSKLVVLDLDSNLLQGSLLEPFDRMVSLRTLYLGF 236 (789)
Q Consensus 157 L~~n~l~~~~~~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~ 236 (789)
+++|.+++..|. .+.++ + +|++|++++|.+++..+..|+++++|++|+++
T Consensus 87 Ls~n~l~~~~p~--~~~~l--~-------------------------~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~- 136 (606)
T 3vq2_A 87 LTGNPIQSFSPG--SFSGL--T-------------------------SLENLVAVETKLASLESFPIGQLITLKKLNVA- 136 (606)
T ss_dssp CTTCCCCCCCTT--SSTTC--T-------------------------TCCEEECTTSCCCCSSSSCCTTCTTCCEEECC-
T ss_pred CCCCcccccChh--hcCCc--c-------------------------cCCEEEccCCccccccccccCCCCCCCEEeCC-
Confidence 999999887663 33333 4 45555555555554444555555555555555
Q ss_pred CCccEEecCCCcCcc-cchhhhhCCCCCCEEEccCCCCCCccChhhhhcCCCCc----EEEccCCcccccccCCCCCccc
Q 042537 237 NELEELFLGKNRLNG-TINQWLSRMYKLDALSLSGNSLTGVVTESVFSELSNLK----ALHLDDNSFTLKFSHDWIPPFQ 311 (789)
Q Consensus 237 n~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~----~L~L~~n~i~~~~~~~~~~~~~ 311 (789)
+|.+.+ .+|..|+++++|++|++++|.+++ ++...|..+++|+ +|++++|.++...+..+... +
T Consensus 137 ---------~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~-~ 205 (606)
T 3vq2_A 137 ---------HNFIHSCKLPAYFSNLTNLVHVDLSYNYIQT-ITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGI-K 205 (606)
T ss_dssp ---------SSCCCCCCCCGGGGTCTTCCEEECCSSCCCE-ECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTC-E
T ss_pred ---------CCcccceechHhHhhcCCCCEEEccCCccee-cChhhhhhhhccccccceeeccCCCcceeCcccccCc-e
Confidence 333332 235555666666666666666653 2222344443332 56666666654444443333 5
Q ss_pred ceeEeccCccCC-CCCchhccCCCCccEEEccCCcCCCC------cchhHhhhc-cCCCeeee-ccccccccCCCCCCCC
Q 042537 312 LIIILLGSCQMG-PHFPKWLQTQNQIEVLDISDAGISDT------VPDWFWDLS-HTIADFNL-SNNHIKGKLPNLSLRF 382 (789)
Q Consensus 312 L~~L~l~~~~~~-~~~~~~l~~l~~L~~L~ls~n~i~~~------~~~~~~~~~-~~L~~L~l-~~n~l~~~~p~~~~~~ 382 (789)
|+.|++++|.+. ...|.++..++.++.+++..+.+.+. .+..+.... -.++.+++ ..+.+.+.+|. +..
T Consensus 206 L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~--~~~ 283 (606)
T 3vq2_A 206 LHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK--FHC 283 (606)
T ss_dssp EEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGS--CGG
T ss_pred eeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccc--ccc
Confidence 666666666554 35567777888888877765444321 111111100 02333333 33444443332 333
Q ss_pred CCCCCEEEccCCcccccCCCCCCCCcEEEcCCCcCccccchhcccCCCCCCEEEcCCCccccCCCcccccCCCCcEEEcC
Q 042537 383 DPFSSSIDISSNYFEGLIPPLPSNASVLNLSRNKFSESISFLCSINGHKLEFLDLSNNILSGRLPDCWMQFDRLAVLSLA 462 (789)
Q Consensus 383 ~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 462 (789)
+ ++++.|++++|.+.... .. ...++|++|++++|.+ +.+| .+ .+++|+.|+++
T Consensus 284 l---------------------~~L~~L~l~~~~~~~l~-~l--~~~~~L~~L~l~~n~l-~~lp-~~-~l~~L~~L~l~ 336 (606)
T 3vq2_A 284 L---------------------ANVSAMSLAGVSIKYLE-DV--PKHFKWQSLSIIRCQL-KQFP-TL-DLPFLKSLTLT 336 (606)
T ss_dssp G---------------------TTCSEEEEESCCCCCCC-CC--CTTCCCSEEEEESCCC-SSCC-CC-CCSSCCEEEEE
T ss_pred C---------------------CCCCEEEecCccchhhh-hc--cccccCCEEEcccccC-cccc-cC-CCCccceeecc
Confidence 3 45555555555554433 11 1227899999999999 5777 55 99999999999
Q ss_pred CCcCcccCCccccccCcccEEEccCCeeeee--CCcCccCCCCCcEEeCCCCcccccCchhhhhcCCCCcEEEcCCCccc
Q 042537 463 NNFFSGKIPKSMGFLHSIQTLSLYNNSLIGE--LPSFFKSCSQLILMDLGKNGLSGEIPTWIGEGLPKLVVLSLKSNKFH 540 (789)
Q Consensus 463 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~ 540 (789)
+|+..+.. .+..+++|++|++++|.+++. .+..+..+++|++|++++|.+. .+|..+. .+++|+.|++++|++.
T Consensus 337 ~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~-~~~~~~~-~l~~L~~L~l~~n~l~ 412 (606)
T 3vq2_A 337 MNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMSANFM-GLEELQHLDFQHSTLK 412 (606)
T ss_dssp SCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEE-EECCCCT-TCTTCCEEECTTSEEE
T ss_pred CCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccc-cchhhcc-CCCCCCeeECCCCccC
Confidence 99766444 577899999999999999876 4788999999999999999998 6776555 7999999999999999
Q ss_pred ccCC-CCccCCCcCceEeccCCcccccCCccccccccCcccCCCccccccCcccccccccccccccceeEEEeecccccc
Q 042537 541 GNIP-FQVCQLSYIQILDLSLNNISGIIPKCLNNFTGMAQKSSSNLAITSNYTFERQGIEFLESYVDNVVLTWKGSQHEY 619 (789)
Q Consensus 541 ~~~~-~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 619 (789)
+..+ ..+..+++|++|++++|++++..|..+..+++|
T Consensus 413 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L------------------------------------------ 450 (606)
T 3vq2_A 413 RVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSL------------------------------------------ 450 (606)
T ss_dssp STTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTC------------------------------------------
T ss_pred CccChhhhhccccCCEEECcCCCCCccchhhhcCCCCC------------------------------------------
Confidence 8877 688999999999999999999888888776666
Q ss_pred ccccCceeEEEcccCcccc-ccchhhhccccCcEEEccCCcceeecCcccccCCCCCEEeCCCCcccccCchhhhcCCCC
Q 042537 620 RSTLGLVKILDFSMNKLSG-TIPEEIMDLVGLVALNLSRNNLTGQITPKIDQLKSLDFLDLSQNQFVGGIPSSLCQLSRL 698 (789)
Q Consensus 620 ~~~l~~L~~L~Ls~N~l~~-~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L 698 (789)
+.|++++|++++ .+|..|+.+++|++|+|++|++++.+|..+..+++|++|+|++|++++.+|..|..+++|
T Consensus 451 -------~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 523 (606)
T 3vq2_A 451 -------NTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSL 523 (606)
T ss_dssp -------CEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTC
T ss_pred -------CEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcC
Confidence 899999999997 478899999999999999999999999999999999999999999999999999999999
Q ss_pred CeEeccCCcccccCCCC-Cccc-cccccccCCCCCCCCCCC
Q 042537 699 SVMNLSYNNLSGKIPLG-TQLQ-SFNASVYAGNPELCGLPL 737 (789)
Q Consensus 699 ~~L~ls~N~l~~~~p~~-~~~~-~~~~~~~~~n~~lc~~~l 737 (789)
++|++++|+++ .+|.. ..+. .+....+.+||+.|+|++
T Consensus 524 ~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~~ 563 (606)
T 3vq2_A 524 STLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICEH 563 (606)
T ss_dssp CEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSSTT
T ss_pred CEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCcc
Confidence 99999999998 56654 2232 366677899999999885
No 10
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=2.3e-54 Score=495.28 Aligned_cols=495 Identities=16% Similarity=0.229 Sum_probs=314.5
Q ss_pred HHHHHHHHHHhhcCcCCCC--------CCCCCCCCCCCCCCCce---eeeEecCCCCcEEEEEcCCCCCCCCcccccCcc
Q 042537 2 EEEREALLEFKQSLVDEYG--------ILSSWGREDDKRDCCYW---RGVRCSNTTGHVIVLDLQVLVHSEPLKGTISPS 70 (789)
Q Consensus 2 ~~~~~~ll~~~~~~~~~~~--------~~~~w~~~~~~~~~c~w---~gv~c~~~~~~v~~l~L~~~~~~~~l~~~l~~~ 70 (789)
..|++||.++++++.++.. ...+|+ .+.+||.| .||+|+. .+||++|+|++ +.+.|.+|++
T Consensus 29 ~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~---~~~~~c~w~~~~GV~C~~-~~~V~~L~L~~----~~l~g~lp~~ 100 (636)
T 4eco_A 29 IKDYLALKEIWDALNGKNWSQQGFGTQPGANWN---FNKELDMWGAQPGVSLNS-NGRVTGLSLEG----FGASGRVPDA 100 (636)
T ss_dssp HHHHHHHHHHHHHTTGGGCCCCC------CCCC---CSSCGGGTTCCTTEEECT-TCCEEEEECTT----SCCEEEECGG
T ss_pred HHHHHHHHHHHHHcCCCCcccCCcCCccCCCCC---CCCCcccccCCCCeEEcC-CCCEEEEEecC----cccCCcCChH
Confidence 3689999999999876543 244798 47899999 9999974 48999999999 8999999999
Q ss_pred ccCCCCCCEEeCCCCCCCCC-----------CCcccccCCCCCCEEecCCCcCCCCCCccccCCCCCcEEeccCccCCCC
Q 042537 71 LLKLYHLRHLDLSENDFSGS-----------RIPEFIGSLNKLRYLSLSSAEFEGPIPSQLGNLSRLKYLDLSYINLNKS 139 (789)
Q Consensus 71 ~~~l~~L~~L~Ls~n~i~~~-----------~~~~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~ 139 (789)
++++++|++|+|++|.+... .+|... +.+|+ +++++|.+.+.+|..+..+
T Consensus 101 l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~~~l~-l~l~~~~l~~~~~~~~~~~---------------- 161 (636)
T 4eco_A 101 IGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ--KQKMR-MHYQKTFVDYDPREDFSDL---------------- 161 (636)
T ss_dssp GGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH--HHHHH-THHHHHHTCCCGGGGSCHH----------------
T ss_pred HhcCccceEEECcCCccccCCccccccccccCchHHH--HHHHH-hhHHHhhhccCchhhHHHH----------------
Confidence 99999999999999976211 122221 33444 5555555554444333211
Q ss_pred cchHHhhCCCCCCCEEEcCCCCCCCCccccccccccCCCCCCeEEc--cCCCCCCCchhHHHhhcCCCcEEEccCCCCcc
Q 042537 140 RDWLRIIDKLPSLRTLNLEHCHLPPIIPSDLLHLNFSTSSLGALYL--FENSLSSSIYPWLFNISSKLVVLDLDSNLLQG 217 (789)
Q Consensus 140 ~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~~~L~~L~l--~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~i~~ 217 (789)
+..+..+++....+..... ..++.+++ ..|++++ +|..+.++. +|++|++++|.+++
T Consensus 162 ---------~~~l~~~~l~~~~~~~~~~----------~~l~~l~l~~~~n~l~~-ip~~l~~l~-~L~~L~Ls~n~l~~ 220 (636)
T 4eco_A 162 ---------IKDCINSDPQQKSIKKSSR----------ITLKDTQIGQLSNNITF-VSKAVMRLT-KLRQFYMGNSPFVA 220 (636)
T ss_dssp ---------HHHHHHHCTTSCCCCCCCC----------CCCCTTTTTCCSCEEEE-ECGGGGGCT-TCCEEEEESCCCCG
T ss_pred ---------HHHHhhcCccccccccccc----------cchhhhhhccccCCCcc-CCHHHhccc-CCCEEECcCCcccc
Confidence 1111112222111110000 11222211 1344444 555444443 56666666666555
Q ss_pred c-----------------Cchhhh--cCCCCcEEECCCCCccEEecCCCcCcccchhhhhCCCCCCEEEccCCC-CCC-c
Q 042537 218 S-----------------LLEPFD--RMVSLRTLYLGFNELEELFLGKNRLNGTINQWLSRMYKLDALSLSGNS-LTG-V 276 (789)
Q Consensus 218 ~-----------------~~~~~~--~l~~L~~L~L~~n~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~-~ 276 (789)
. +|..++ ++++|++|+++ +|.+.+.+|..|+++++|++|++++|+ +++ .
T Consensus 221 ~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~----------~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~ 290 (636)
T 4eco_A 221 ENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVY----------NCPNLTKLPTFLKALPEMQLINVACNRGISGEQ 290 (636)
T ss_dssp GGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEE----------CCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHH
T ss_pred ccccccccccccchhcccCchhhhhcccCCCCEEEec----------CCcCCccChHHHhcCCCCCEEECcCCCCCcccc
Confidence 3 455555 55555555555 444455555555555555555555555 554 4
Q ss_pred cChhhhhcC------CCCcEEEccCCcccccccCCCCCcccceeEeccCccCCCCCch--hccCCCCccEEEccCCcCCC
Q 042537 277 VTESVFSEL------SNLKALHLDDNSFTLKFSHDWIPPFQLIIILLGSCQMGPHFPK--WLQTQNQIEVLDISDAGISD 348 (789)
Q Consensus 277 ~~~~~~~~l------~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~--~l~~l~~L~~L~ls~n~i~~ 348 (789)
+|. .+..+ ++|++|++++|+++ .+|. .+..+++|++|++++|.+++
T Consensus 291 lp~-~~~~L~~~~~l~~L~~L~L~~n~l~-------------------------~ip~~~~l~~l~~L~~L~L~~N~l~g 344 (636)
T 4eco_A 291 LKD-DWQALADAPVGEKIQIIYIGYNNLK-------------------------TFPVETSLQKMKKLGMLECLYNQLEG 344 (636)
T ss_dssp HHH-HHHHHHHSGGGGTCCEEECCSSCCS-------------------------SCCCHHHHTTCTTCCEEECCSCCCEE
T ss_pred chH-HHHhhhccccCCCCCEEECCCCcCC-------------------------ccCchhhhccCCCCCEEeCcCCcCcc
Confidence 444 23332 44444444444333 3343 44444444444444444432
Q ss_pred CcchhHhhhccCCCeeeeccccccccCCCCCCCCCCCCCEEEccCCcccccCCCCCCCCcEEEcCCCcCccccchhcccC
Q 042537 349 TVPDWFWDLSHTIADFNLSNNHIKGKLPNLSLRFDPFSSSIDISSNYFEGLIPPLPSNASVLNLSRNKFSESISFLCSIN 428 (789)
Q Consensus 349 ~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~ 428 (789)
.+| . +..+
T Consensus 345 ~ip-~--------------------------~~~l--------------------------------------------- 352 (636)
T 4eco_A 345 KLP-A--------------------------FGSE--------------------------------------------- 352 (636)
T ss_dssp ECC-C--------------------------CEEE---------------------------------------------
T ss_pred chh-h--------------------------hCCC---------------------------------------------
Confidence 222 1 1111
Q ss_pred CCCCCEEEcCCCccccCCCcccccCCC-CcEEEcCCCcCcccCCccccccC--cccEEEccCCeeeeeCCcCcc------
Q 042537 429 GHKLEFLDLSNNILSGRLPDCWMQFDR-LAVLSLANNFFSGKIPKSMGFLH--SIQTLSLYNNSLIGELPSFFK------ 499 (789)
Q Consensus 429 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~-L~~L~L~~n~l~~~~~~~~~~l~--~L~~L~L~~n~l~~~~~~~~~------ 499 (789)
++|++|++++|+++ .+|..+.++++ |+.|++++|+++ .+|..+...+ +|++|++++|.+.+..|..+.
T Consensus 353 -~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~ 429 (636)
T 4eco_A 353 -IKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTP 429 (636)
T ss_dssp -EEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSC
T ss_pred -CCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhccccccc
Confidence 45666666666666 55666666666 777777777776 5566655543 677777777777776666666
Q ss_pred -CCCCCcEEeCCCCcccccCchhhhhcCCCCcEEEcCCCcccccCCCC-ccC-------CCcCceEeccCCcccccCCcc
Q 042537 500 -SCSQLILMDLGKNGLSGEIPTWIGEGLPKLVVLSLKSNKFHGNIPFQ-VCQ-------LSYIQILDLSLNNISGIIPKC 570 (789)
Q Consensus 500 -~l~~L~~L~ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~-------l~~L~~L~Ls~N~l~~~~p~~ 570 (789)
.+++|++|++++|+++ .+|..++..+++|++|++++|+++ .+|.. +.. +++|+.|++++|+++ .+|..
T Consensus 430 ~~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~ 506 (636)
T 4eco_A 430 FKGINVSSINLSNNQIS-KFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDD 506 (636)
T ss_dssp CCCCCEEEEECCSSCCC-SCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGG
T ss_pred ccCCCCCEEECcCCccC-cCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCCcCC-ccChh
Confidence 6678888888888887 777777766788888888888887 44443 322 238888899888888 55555
Q ss_pred cc--ccccCcccCCCccccccCcccccccccccccccceeEEEeeccccccccccCceeEEEcccCccccccchhhhccc
Q 042537 571 LN--NFTGMAQKSSSNLAITSNYTFERQGIEFLESYVDNVVLTWKGSQHEYRSTLGLVKILDFSMNKLSGTIPEEIMDLV 648 (789)
Q Consensus 571 ~~--~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~ 648 (789)
+. .+++| +.|++++|++++ +|..+..++
T Consensus 507 ~~~~~l~~L-------------------------------------------------~~L~Ls~N~l~~-ip~~~~~l~ 536 (636)
T 4eco_A 507 FRATTLPYL-------------------------------------------------VGIDLSYNSFSK-FPTQPLNSS 536 (636)
T ss_dssp GSTTTCTTC-------------------------------------------------CEEECCSSCCSS-CCCGGGGCS
T ss_pred hhhccCCCc-------------------------------------------------CEEECCCCCCCC-cChhhhcCC
Confidence 43 44444 888999999886 888888899
Q ss_pred cCcEEEc------cCCcceeecCcccccCCCCCEEeCCCCcccccCchhhhcCCCCCeEeccCCccccc
Q 042537 649 GLVALNL------SRNNLTGQITPKIDQLKSLDFLDLSQNQFVGGIPSSLCQLSRLSVMNLSYNNLSGK 711 (789)
Q Consensus 649 ~L~~L~L------s~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~ 711 (789)
+|++|+| ++|++.+.+|..+..+++|+.|+|++|++ +.+|..+. ++|++||+++|++...
T Consensus 537 ~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~--~~L~~L~Ls~N~l~~~ 602 (636)
T 4eco_A 537 TLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT--PNISVLDIKDNPNISI 602 (636)
T ss_dssp SCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--TTCCEEECCSCTTCEE
T ss_pred CCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh--CcCCEEECcCCCCccc
Confidence 9999988 56788889999999999999999999999 57787765 7999999999988743
No 11
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=6e-52 Score=491.68 Aligned_cols=514 Identities=21% Similarity=0.198 Sum_probs=384.4
Q ss_pred CCCCCCEEeCCCCCCCCCCCcccccCCCCCCEEecCCCcCCCCC-CccccCCCCCcEEeccCccCCCCcchHHhhCCCCC
Q 042537 73 KLYHLRHLDLSENDFSGSRIPEFIGSLNKLRYLSLSSAEFEGPI-PSQLGNLSRLKYLDLSYINLNKSRDWLRIIDKLPS 151 (789)
Q Consensus 73 ~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~-p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~ 151 (789)
-.+++++|||++|.+++. .+..|.++++|++|+|++|.+.+.+ |.+|.++++|++|+|++|.++++ .|..|+++++
T Consensus 22 lp~~l~~LdLs~N~i~~i-~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~--~p~~~~~l~~ 98 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIRTV-TASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFL--HPDAFQGLFH 98 (844)
T ss_dssp SCTTCCEEEEESCCCCEE-CSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEE--CTTSSCSCSS
T ss_pred CCCCcCEEECCCCcCCcc-ChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCccc--CHhHccCCcc
Confidence 446788888888888765 6777888888888888888554444 77788888888888888888774 4677888888
Q ss_pred CCEEEcCCCCCCCCccccccccccCCCCCCeEEccCCCCCCCchhHHHhhcCCCcEEEccCCCCcccCc-hhhhcCCCCc
Q 042537 152 LRTLNLEHCHLPPIIPSDLLHLNFSTSSLGALYLFENSLSSSIYPWLFNISSKLVVLDLDSNLLQGSLL-EPFDRMVSLR 230 (789)
Q Consensus 152 L~~L~L~~n~l~~~~~~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~-~~~~~l~~L~ 230 (789)
|++|++++|.+.+..+....+.++ + +|++|++++|.+++..+ ..|+++++|+
T Consensus 99 L~~L~Ls~n~l~~~~~~~~~~~~L--~-------------------------~L~~L~Ls~N~l~~~~~~~~~~~L~~L~ 151 (844)
T 3j0a_A 99 LFELRLYFCGLSDAVLKDGYFRNL--K-------------------------ALTRLDLSKNQIRSLYLHPSFGKLNSLK 151 (844)
T ss_dssp CCCEECTTCCCSSCCSTTCCCSSC--S-------------------------SCCEEEEESCCCCCCCCCGGGGTCSSCC
T ss_pred cCEeeCcCCCCCcccccCcccccc--C-------------------------CCCEEECCCCcccccccchhHhhCCCCC
Confidence 888888888877654432223333 4 55555555555554433 4566666666
Q ss_pred EEECCCCCccEEecCCCcCcccchhhhhCC--CCCCEEEccCCCCCCccChhhhhcCC------CCcEEEccCCcccccc
Q 042537 231 TLYLGFNELEELFLGKNRLNGTINQWLSRM--YKLDALSLSGNSLTGVVTESVFSELS------NLKALHLDDNSFTLKF 302 (789)
Q Consensus 231 ~L~L~~n~L~~L~L~~n~l~~~~~~~l~~l--~~L~~L~L~~n~l~~~~~~~~~~~l~------~L~~L~L~~n~i~~~~ 302 (789)
.|+++ +|.+++..+..+..+ ++|+.|++++|.+.+..+. .+..++ .|++|++++|.+.+..
T Consensus 152 ~L~Ls----------~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~-~~~~~~~~~~~~~L~~L~Ls~n~l~~~~ 220 (844)
T 3j0a_A 152 SIDFS----------SNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSV-DWGKCMNPFRNMVLEILDVSGNGWTVDI 220 (844)
T ss_dssp EEEEE----------SSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCC-CCCSSSCTTTTCCBSEEBCSSCCSSTTT
T ss_pred EEECC----------CCcCCeeCHHHcccccCCccceEECCCCcccccccc-chhhcCCccccCceeEEecCCCcCchhH
Confidence 66666 444444455555555 6677777777777655544 244443 4999999999988777
Q ss_pred cCCCCC---cccceeEeccCcc---------CCCCCchhccCC--CCccEEEccCCcCCCCcchhHhhhccCCCeeeecc
Q 042537 303 SHDWIP---PFQLIIILLGSCQ---------MGPHFPKWLQTQ--NQIEVLDISDAGISDTVPDWFWDLSHTIADFNLSN 368 (789)
Q Consensus 303 ~~~~~~---~~~L~~L~l~~~~---------~~~~~~~~l~~l--~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~l~~ 368 (789)
+..+.. ..+++.+.+..+. +....+..|..+ ++|+.|++++|.+.+..+..+
T Consensus 221 ~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~-------------- 286 (844)
T 3j0a_A 221 TGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVF-------------- 286 (844)
T ss_dssp TSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCS--------------
T ss_pred HHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhh--------------
Confidence 666543 3567778776332 222333445444 789999999999876554433
Q ss_pred ccccccCCCCCCCCCCCCCEEEccCCcccccCCCCCCCCcEEEcCCCcCccccchhcccCCCCCCEEEcCCCccccCCCc
Q 042537 369 NHIKGKLPNLSLRFDPFSSSIDISSNYFEGLIPPLPSNASVLNLSRNKFSESISFLCSINGHKLEFLDLSNNILSGRLPD 448 (789)
Q Consensus 369 n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~ 448 (789)
..++.|+.|++++|.+.+..+..+.. +++|++|++++|.+++..+.
T Consensus 287 ------------~~l~~L~~L~L~~n~i~~~~~~~~~~----------------------l~~L~~L~Ls~N~l~~~~~~ 332 (844)
T 3j0a_A 287 ------------ETLKDLKVLNLAYNKINKIADEAFYG----------------------LDNLQVLNLSYNLLGELYSS 332 (844)
T ss_dssp ------------SSCCCCCEEEEESCCCCEECTTTTTT----------------------CSSCCEEEEESCCCSCCCSC
T ss_pred ------------hcCCCCCEEECCCCcCCCCChHHhcC----------------------CCCCCEEECCCCCCCccCHH
Confidence 33344555555555544443322222 27899999999999988899
Q ss_pred ccccCCCCcEEEcCCCcCcccCCccccccCcccEEEccCCeeeeeCCcCccCCCCCcEEeCCCCcccccCchhhhhcCCC
Q 042537 449 CWMQFDRLAVLSLANNFFSGKIPKSMGFLHSIQTLSLYNNSLIGELPSFFKSCSQLILMDLGKNGLSGEIPTWIGEGLPK 528 (789)
Q Consensus 449 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~l~~ 528 (789)
.|..+++|+.|++++|++.+..+..|..+++|++|++++|.+++. ..+++|+.|++++|+++ .+|.. ..+
T Consensus 333 ~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i-----~~~~~L~~L~l~~N~l~-~l~~~----~~~ 402 (844)
T 3j0a_A 333 NFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTI-----HFIPSIPDIFLSGNKLV-TLPKI----NLT 402 (844)
T ss_dssp SCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCC-----SSCCSCSEEEEESCCCC-CCCCC----CTT
T ss_pred HhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcc-----cCCCCcchhccCCCCcc-ccccc----ccc
Confidence 999999999999999999988888899999999999999999843 33889999999999998 77754 568
Q ss_pred CcEEEcCCCcccccCC-CCccCCCcCceEeccCCcccccCCc-cccccccCcccCCCccccccCcccccccccccccccc
Q 042537 529 LVVLSLKSNKFHGNIP-FQVCQLSYIQILDLSLNNISGIIPK-CLNNFTGMAQKSSSNLAITSNYTFERQGIEFLESYVD 606 (789)
Q Consensus 529 L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 606 (789)
++.|++++|++.+... ..+..+++|+.|++++|++++..+. .+..
T Consensus 403 l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~--------------------------------- 449 (844)
T 3j0a_A 403 ANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSE--------------------------------- 449 (844)
T ss_dssp CCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCS---------------------------------
T ss_pred cceeecccCccccCchhhhhhcCCccceeeCCCCccccccccccccc---------------------------------
Confidence 9999999999986432 2355899999999999999865443 1222
Q ss_pred eeEEEeeccccccccccCceeEEEcccCccc-----cccchhhhccccCcEEEccCCcceeecCcccccCCCCCEEeCCC
Q 042537 607 NVVLTWKGSQHEYRSTLGLVKILDFSMNKLS-----GTIPEEIMDLVGLVALNLSRNNLTGQITPKIDQLKSLDFLDLSQ 681 (789)
Q Consensus 607 ~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-----~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~ 681 (789)
++.|+.|++++|.++ +..|..|..+++|++|+|++|++++.+|..|..+++|+.|+|++
T Consensus 450 ----------------~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 513 (844)
T 3j0a_A 450 ----------------NPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNS 513 (844)
T ss_dssp ----------------CTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEES
T ss_pred ----------------CCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCC
Confidence 344589999999997 44556789999999999999999998899999999999999999
Q ss_pred CcccccCchhhhcCCCCCeEeccCCcccccCCCCCccccccccccCCCCCCCCCCCC
Q 042537 682 NQFVGGIPSSLCQLSRLSVMNLSYNNLSGKIPLGTQLQSFNASVYAGNPELCGLPLR 738 (789)
Q Consensus 682 N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~n~~lc~~~l~ 738 (789)
|++++..|..+. ++|++||+++|++++.+|.. +..+....+.|||+.|+|++.
T Consensus 514 N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~--~~~L~~l~l~~Np~~C~c~~~ 566 (844)
T 3j0a_A 514 NRLTVLSHNDLP--ANLEILDISRNQLLAPNPDV--FVSLSVLDITHNKFICECELS 566 (844)
T ss_dssp CCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCC--CSSCCEEEEEEECCCCSSSCC
T ss_pred CCCCccChhhhh--ccccEEECCCCcCCCCChhH--hCCcCEEEecCCCcccccccH
Confidence 999988887776 89999999999999998854 556777789999999999864
No 12
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=3.6e-51 Score=474.90 Aligned_cols=519 Identities=19% Similarity=0.278 Sum_probs=302.0
Q ss_pred HHHHHHHHHHhhcCcCCCCCCCCCCCCC--CCCCC--Cce------------eeeEecCCCCcEEEEEcCCCCCCCCccc
Q 042537 2 EEEREALLEFKQSLVDEYGILSSWGRED--DKRDC--CYW------------RGVRCSNTTGHVIVLDLQVLVHSEPLKG 65 (789)
Q Consensus 2 ~~~~~~ll~~~~~~~~~~~~~~~w~~~~--~~~~~--c~w------------~gv~c~~~~~~v~~l~L~~~~~~~~l~~ 65 (789)
.+|++||++||+++.+| +|+..+ ...+| |.| .||+|+. .+||++|+|++ +.+.|
T Consensus 268 ~~d~~ALl~~k~~l~~~-----~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~-~~~V~~L~Ls~----~~L~G 337 (876)
T 4ecn_A 268 IKDYKALKAIWEALDGK-----NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDN-NGRVTGLSLAG----FGAKG 337 (876)
T ss_dssp HHHHHHHHHHHHHTTGG-----GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECT-TSCEEEEECTT----TCCEE
T ss_pred hHHHHHHHHHHHHcCCC-----CCCcCCCcccccCCccccccccccccccCcCceEecC-CCCEEEEECcc----CCCCC
Confidence 47999999999999877 786311 01345 999 9999975 68999999999 89999
Q ss_pred ccCccccCCCCCCEEeC-CCCCCCCCCCcccccCC-CCCC-----EE---------ec-CCCcCC-----------CCCC
Q 042537 66 TISPSLLKLYHLRHLDL-SENDFSGSRIPEFIGSL-NKLR-----YL---------SL-SSAEFE-----------GPIP 117 (789)
Q Consensus 66 ~l~~~~~~l~~L~~L~L-s~n~i~~~~~~~~~~~l-~~L~-----~L---------~L-s~n~i~-----------~~~p 117 (789)
.+|++|+++++|++|+| ++|.+++. .+...... ..+. .+ +. ....+. ...+
T Consensus 338 ~ip~~l~~L~~L~~LdLss~N~lsG~-~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~~~~ 416 (876)
T 4ecn_A 338 RVPDAIGQLTELKVLSFGTHSETVSG-RLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKP 416 (876)
T ss_dssp EECGGGGGCTTCCEEESCCTTHHHHT-TCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTTSCC
T ss_pred cCchHHhccccceEeeeccccccccc-ccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCccccc
Confidence 99999999999999999 88876543 12110000 0000 00 00 000000 0000
Q ss_pred ccccCCCCCcEEeccC--ccCCCCcchHHhhCCCCCCCEEEcCCCCCCC-----------------CccccccccccCCC
Q 042537 118 SQLGNLSRLKYLDLSY--INLNKSRDWLRIIDKLPSLRTLNLEHCHLPP-----------------IIPSDLLHLNFSTS 178 (789)
Q Consensus 118 ~~~~~l~~L~~L~Ls~--n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~-----------------~~~~~~~~~~l~~~ 178 (789)
........++.+.+.. |++++ +|..++++++|++|+|++|.+++ .+|..+.+.++ +
T Consensus 417 i~~~~~l~l~~l~l~~~~N~L~~---IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L--~ 491 (876)
T 4ecn_A 417 IKKDSRISLKDTQIGNLTNRITF---ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNL--K 491 (876)
T ss_dssp CCCCCCCCCCTTTTTCCSCEEEE---ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGC--T
T ss_pred cccccccchhhceeccccCcccc---hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccC--C
Confidence 0111222233333322 44444 34455555555555555555555 14422222244 6
Q ss_pred CCCeEEccCCCCCCCchhHHHhhcCCCcEEEccCCC-Ccc-cCchhhhcCC-------CCcEEECCCCCccEEecCCCcC
Q 042537 179 SLGALYLFENSLSSSIYPWLFNISSKLVVLDLDSNL-LQG-SLLEPFDRMV-------SLRTLYLGFNELEELFLGKNRL 249 (789)
Q Consensus 179 ~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~-i~~-~~~~~~~~l~-------~L~~L~L~~n~L~~L~L~~n~l 249 (789)
+|++|++++|.+.+.+|..+..+. +|+.|++++|+ +++ .+|..+++++ +|+.|+++ +|.+
T Consensus 492 ~L~~L~Ls~N~l~~~iP~~l~~L~-~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls----------~N~L 560 (876)
T 4ecn_A 492 DLTDVELYNCPNMTQLPDFLYDLP-ELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMG----------YNNL 560 (876)
T ss_dssp TCCEEEEESCTTCCSCCGGGGGCS-SCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECC----------SSCC
T ss_pred CCCEEECcCCCCCccChHHHhCCC-CCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEee----------CCcC
Confidence 666666666666666665555554 66777777666 665 5565555444 67777776 4445
Q ss_pred cccchh--hhhCCCCCCEEEccCCCCCCccChhhhhcCCCCcEEEccCCcccccccCCCCCcccceeEeccCccCCCCCc
Q 042537 250 NGTINQ--WLSRMYKLDALSLSGNSLTGVVTESVFSELSNLKALHLDDNSFTLKFSHDWIPPFQLIIILLGSCQMGPHFP 327 (789)
Q Consensus 250 ~~~~~~--~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 327 (789)
+ .+|. .|+++++|++|+|++|.++ .+| .|..+++|++|++++|++. .+|
T Consensus 561 ~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp--~~~~L~~L~~L~Ls~N~l~-------------------------~lp 611 (876)
T 4ecn_A 561 E-EFPASASLQKMVKLGLLDCVHNKVR-HLE--AFGTNVKLTDLKLDYNQIE-------------------------EIP 611 (876)
T ss_dssp C-BCCCHHHHTTCTTCCEEECTTSCCC-BCC--CCCTTSEESEEECCSSCCS-------------------------CCC
T ss_pred C-ccCChhhhhcCCCCCEEECCCCCcc-cch--hhcCCCcceEEECcCCccc-------------------------cch
Confidence 5 4555 6777777888888887777 666 4777777777777777766 233
Q ss_pred hhccCCCC-ccEEEccCCcCCCCcchhHhhhc-cCCCeeeeccccccccCCCCCCCCCCCCCEEEccCCcccccCCCCCC
Q 042537 328 KWLQTQNQ-IEVLDISDAGISDTVPDWFWDLS-HTIADFNLSNNHIKGKLPNLSLRFDPFSSSIDISSNYFEGLIPPLPS 405 (789)
Q Consensus 328 ~~l~~l~~-L~~L~ls~n~i~~~~~~~~~~~~-~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~~~ 405 (789)
..+..+++ |+.|++++|.++ .+|..+.... ++|+.|++++|.+.+.+|. .+.
T Consensus 612 ~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~-------------------------l~~ 665 (876)
T 4ecn_A 612 EDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRN-------------------------ISC 665 (876)
T ss_dssp TTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSS-------------------------CSS
T ss_pred HHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCcccc-------------------------chh
Confidence 33444444 555555555554 2222211100 0122233333322222221 000
Q ss_pred CCcEEEcCCCcCccccchhcccCCCCCCEEEcCCCccccCCCcc-cccCCCCcEEEcCCCcCcccCCccccccCcccEEE
Q 042537 406 NASVLNLSRNKFSESISFLCSINGHKLEFLDLSNNILSGRLPDC-WMQFDRLAVLSLANNFFSGKIPKSMGFLHSIQTLS 484 (789)
Q Consensus 406 ~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 484 (789)
.+. ....++|+.|++++|.++ .+|.. +..+++|+.|++++|+++ .+|..+....
T Consensus 666 ~l~-----------------~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~------ 720 (876)
T 4ecn_A 666 SMD-----------------DYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMT-SIPENSLKPK------ 720 (876)
T ss_dssp CTT-----------------TCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCT------
T ss_pred hhc-----------------cccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCC-ccChHHhccc------
Confidence 000 000045666666666666 33333 345666666666666666 3333221110
Q ss_pred ccCCeeeeeCCcCccCCCCCcEEeCCCCcccccCchhhh-hcCCCCcEEEcCCCcccccCCCCccCCCcCceEeccCCcc
Q 042537 485 LYNNSLIGELPSFFKSCSQLILMDLGKNGLSGEIPTWIG-EGLPKLVVLSLKSNKFHGNIPFQVCQLSYIQILDLSLNNI 563 (789)
Q Consensus 485 L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l 563 (789)
+..+.++++|+.|++++|+++ .+|..++ ..+++|+.|+|++|++++ +|..+..+++|+.|+|++|+
T Consensus 721 ----------~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~- 787 (876)
T 4ecn_A 721 ----------DGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQR- 787 (876)
T ss_dssp ----------TSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCB-
T ss_pred ----------cccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCC-
Confidence 001223346666677777666 6666554 346777777777777765 56666677777777777663
Q ss_pred cccCCccccccccCcccCCCccccccCcccccccccccccccceeEEEeeccccccccccCceeEEEcccCccccccchh
Q 042537 564 SGIIPKCLNNFTGMAQKSSSNLAITSNYTFERQGIEFLESYVDNVVLTWKGSQHEYRSTLGLVKILDFSMNKLSGTIPEE 643 (789)
Q Consensus 564 ~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~ 643 (789)
++++|++.+.+|..
T Consensus 788 ------------------------------------------------------------------~ls~N~l~~~ip~~ 801 (876)
T 4ecn_A 788 ------------------------------------------------------------------DAEGNRILRQWPTG 801 (876)
T ss_dssp ------------------------------------------------------------------CTTCCBCCCCCCTT
T ss_pred ------------------------------------------------------------------CcccccccccChHH
Confidence 23456666777878
Q ss_pred hhccccCcEEEccCCcceeecCcccccCCCCCEEeCCCCcccccCchhhhcCCCCCeEeccCCccc
Q 042537 644 IMDLVGLVALNLSRNNLTGQITPKIDQLKSLDFLDLSQNQFVGGIPSSLCQLSRLSVMNLSYNNLS 709 (789)
Q Consensus 644 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~ 709 (789)
|..+++|+.|+|++|++ +.+|..+. ++|+.|||++|++....+..+.....+..+.+.+|++.
T Consensus 802 l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i~~~~~~~~~~~~~~~L~~n~~~ 864 (876)
T 4ecn_A 802 ITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQ 864 (876)
T ss_dssp GGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEEECGGGHHHHHTTCCEEECCTTS
T ss_pred HhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCccChHHccccccchheeecCCCcc
Confidence 88888888888888888 57777765 58888888888888777777766666777777777654
No 13
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=7.4e-49 Score=447.69 Aligned_cols=510 Identities=20% Similarity=0.185 Sum_probs=331.4
Q ss_pred ccCccccCCCCCCEEeCCCCCCCCCCCcccccCCCCCCEEecCCCcCCCCCCccccCCCCCcEEeccCccCCCCcchHHh
Q 042537 66 TISPSLLKLYHLRHLDLSENDFSGSRIPEFIGSLNKLRYLSLSSAEFEGPIPSQLGNLSRLKYLDLSYINLNKSRDWLRI 145 (789)
Q Consensus 66 ~l~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 145 (789)
.+|..+. +++++|++++|.+++. .+..|.++++|++|++++|++++..|.+|.++++|++|+|++|+++.+ .|..
T Consensus 21 ~ip~~l~--~~l~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~--~~~~ 95 (570)
T 2z63_A 21 KIPDNLP--FSTKNLDLSFNPLRHL-GSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSL--ALGA 95 (570)
T ss_dssp SCCSSSC--SSCCEEECCSCCCCEE-CTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEE--CTTT
T ss_pred ccCCCcc--ccccEEEccCCccCcc-ChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCcc--CHhh
Confidence 3454442 4788999999988865 566788899999999999988877788888999999999999988875 3467
Q ss_pred hCCCCCCCEEEcCCCCCCCCccccccccccCCCCCCeEEccCCCCCC-CchhHHHhhcCCCcEEEccCCCCcccCchhhh
Q 042537 146 IDKLPSLRTLNLEHCHLPPIIPSDLLHLNFSTSSLGALYLFENSLSS-SIYPWLFNISSKLVVLDLDSNLLQGSLLEPFD 224 (789)
Q Consensus 146 l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~~~L~~L~l~~n~l~~-~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~ 224 (789)
|+++++|++|++++|.+.+..+ ..+.++ ++|++|++++|.+.+ .+|..+.++. +|++|++++|.+++..+..++
T Consensus 96 ~~~l~~L~~L~L~~n~l~~l~~--~~~~~l--~~L~~L~L~~n~l~~~~lp~~~~~l~-~L~~L~l~~n~l~~~~~~~~~ 170 (570)
T 2z63_A 96 FSGLSSLQKLVAVETNLASLEN--FPIGHL--KTLKELNVAHNLIQSFKLPEYFSNLT-NLEHLDLSSNKIQSIYCTDLR 170 (570)
T ss_dssp TTTCTTCCEEECTTSCCCCSTT--CSCTTC--TTCCEEECCSSCCCCCCCCGGGGGCT-TCCEEECTTSCCCEECGGGGH
T ss_pred hcCccccccccccccccccCCC--cccccc--ccccEEecCCCccceecChhhhcccC-CCCEEeCcCCccceecHHHcc
Confidence 8889999999999998887665 345555 888888888888876 4677666655 899999999999888888888
Q ss_pred cCCCC----cEEECCCCCccEEecCCCcCcccchhhhhCCCCCCEEEccCCCCCCccChhhhhcCCCCcEEEccCCcccc
Q 042537 225 RMVSL----RTLYLGFNELEELFLGKNRLNGTINQWLSRMYKLDALSLSGNSLTGVVTESVFSELSNLKALHLDDNSFTL 300 (789)
Q Consensus 225 ~l~~L----~~L~L~~n~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~ 300 (789)
.+++| +.|+++ +|.+.+..+..|... +|++|++++|..........+..+++++...+....+..
T Consensus 171 ~l~~L~~~~~~L~l~----------~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~ 239 (570)
T 2z63_A 171 VLHQMPLLNLSLDLS----------LNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRN 239 (570)
T ss_dssp HHHTCTTCCCEEECT----------TCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCC
T ss_pred chhccchhhhhcccC----------CCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccC
Confidence 88877 677777 555555566666665 789999988865533333457778888777665433221
Q ss_pred cccCCCCCcccceeEeccCccCCCCCchhccCCC--CccEEEccCC-cCCCCcchhHhhhccCCCeeeeccccccccCCC
Q 042537 301 KFSHDWIPPFQLIIILLGSCQMGPHFPKWLQTQN--QIEVLDISDA-GISDTVPDWFWDLSHTIADFNLSNNHIKGKLPN 377 (789)
Q Consensus 301 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~--~L~~L~ls~n-~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~ 377 (789)
.. .++. .....+..++ .++.++++++ .+.+..+..+.. .++|+.|++++|.++ .+|.
T Consensus 240 ~~--------~l~~----------~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~-l~~L~~L~l~~~~l~-~l~~ 299 (570)
T 2z63_A 240 EG--------NLEK----------FDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNC-LTNVSSFSLVSVTIE-RVKD 299 (570)
T ss_dssp CS--------SCEE----------CCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGG-GTTCSEEEEESCEEC-SCCB
T ss_pred ch--------hhhh----------cchhhhccccccchhhhhhhcchhhhhhchhhhcC-cCcccEEEecCccch-hhhh
Confidence 10 0000 0011111111 2455566555 444444444433 235555555555554 2333
Q ss_pred CCCCCCCCCCEEEccCCcccccCCCCCCCCcEEEcCCCcCccccchhcccCCCCCCEEEcCCCccccCCCcccccCCCCc
Q 042537 378 LSLRFDPFSSSIDISSNYFEGLIPPLPSNASVLNLSRNKFSESISFLCSINGHKLEFLDLSNNILSGRLPDCWMQFDRLA 457 (789)
Q Consensus 378 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 457 (789)
.+..+ .|++|++++|.+. ..+.. .+++|+.|++++|.+.+..+. ..+++|+
T Consensus 300 -~~~~~-~L~~L~l~~n~~~---------------------~l~~~----~l~~L~~L~l~~n~~~~~~~~--~~~~~L~ 350 (570)
T 2z63_A 300 -FSYNF-GWQHLELVNCKFG---------------------QFPTL----KLKSLKRLTFTSNKGGNAFSE--VDLPSLE 350 (570)
T ss_dssp -CCSCC-CCSEEEEESCBCS---------------------SCCBC----BCSSCCEEEEESCBSCCBCCC--CBCTTCC
T ss_pred -hhccC-CccEEeeccCccc---------------------ccCcc----cccccCEEeCcCCcccccccc--ccCCCCC
Confidence 12222 2333333333322 11110 014455555555554433332 3445555
Q ss_pred EEEcCCCcCcccCCccccccCcccEEEccCCeeeeeCCcCccCCCCCcEEeCCCCcccccCchhhhhcCCCCcEEEcCCC
Q 042537 458 VLSLANNFFSGKIPKSMGFLHSIQTLSLYNNSLIGELPSFFKSCSQLILMDLGKNGLSGEIPTWIGEGLPKLVVLSLKSN 537 (789)
Q Consensus 458 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~l~~L~~L~L~~n 537 (789)
.|++++|.+++.. ..+..+..+++|++|++++|.+. .++..+. .+++|++|++++|
T Consensus 351 ~L~l~~n~l~~~~----------------------~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~-~l~~L~~L~l~~n 406 (570)
T 2z63_A 351 FLDLSRNGLSFKG----------------------CCSQSDFGTTSLKYLDLSFNGVI-TMSSNFL-GLEQLEHLDFQHS 406 (570)
T ss_dssp EEECCSSCCBEEE----------------------EEEHHHHTCSCCCEEECCSCSEE-EEEEEEE-TCTTCCEEECTTS
T ss_pred EEeCcCCccCccc----------------------cccccccccCccCEEECCCCccc-ccccccc-ccCCCCEEEccCC
Confidence 5555555554322 01333444455555555555544 2333222 4555555555555
Q ss_pred cccccCC-CCccCCCcCceEeccCCcccccCCccccccccCcccCCCccccccCcccccccccccccccceeEEEeeccc
Q 042537 538 KFHGNIP-FQVCQLSYIQILDLSLNNISGIIPKCLNNFTGMAQKSSSNLAITSNYTFERQGIEFLESYVDNVVLTWKGSQ 616 (789)
Q Consensus 538 ~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 616 (789)
++.+..+ ..+..+++|++|++++|.+.+..|..+..+++|
T Consensus 407 ~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L--------------------------------------- 447 (570)
T 2z63_A 407 NLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSL--------------------------------------- 447 (570)
T ss_dssp EEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTC---------------------------------------
T ss_pred ccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcC---------------------------------------
Confidence 5554433 345566666666666666666555555554444
Q ss_pred cccccccCceeEEEcccCccc-cccchhhhccccCcEEEccCCcceeecCcccccCCCCCEEeCCCCcccccCchhhhcC
Q 042537 617 HEYRSTLGLVKILDFSMNKLS-GTIPEEIMDLVGLVALNLSRNNLTGQITPKIDQLKSLDFLDLSQNQFVGGIPSSLCQL 695 (789)
Q Consensus 617 ~~~~~~l~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l 695 (789)
+.|++++|+++ +.+|..+..+++|++|+|++|++++..|..+..+++|+.|++++|++++..|..|..+
T Consensus 448 ----------~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 517 (570)
T 2z63_A 448 ----------EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRL 517 (570)
T ss_dssp ----------CEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTC
T ss_pred ----------cEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcc
Confidence 67777777776 4678888999999999999999998889999999999999999999999888889999
Q ss_pred CCCCeEeccCCcccccCCCCCcc
Q 042537 696 SRLSVMNLSYNNLSGKIPLGTQL 718 (789)
Q Consensus 696 ~~L~~L~ls~N~l~~~~p~~~~~ 718 (789)
++|++|++++|+++|.+|....+
T Consensus 518 ~~L~~L~l~~N~~~~~~~~~~~~ 540 (570)
T 2z63_A 518 TSLQKIWLHTNPWDCSCPRIDYL 540 (570)
T ss_dssp TTCCEEECCSSCBCCCTTTTHHH
T ss_pred cCCcEEEecCCcccCCCcchHHH
Confidence 99999999999999999976443
No 14
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=4.9e-48 Score=438.51 Aligned_cols=500 Identities=20% Similarity=0.211 Sum_probs=337.1
Q ss_pred CCceeeeEecCCCCcEEEEEcCCCCCCCCcccccCccccCCCCCCEEeCCCCCCCCCCCcccccCCCCCCEEecCCCcCC
Q 042537 34 CCYWRGVRCSNTTGHVIVLDLQVLVHSEPLKGTISPSLLKLYHLRHLDLSENDFSGSRIPEFIGSLNKLRYLSLSSAEFE 113 (789)
Q Consensus 34 ~c~w~gv~c~~~~~~v~~l~L~~~~~~~~l~~~l~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~i~ 113 (789)
.|.|.|+ |+. ++ +.+ ..+|+.+. ++|++|++++|++++. .|..|+++++|++|++++|+++
T Consensus 3 ~C~~~~~-c~~----------~~----~~l-~~ip~~~~--~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~i~ 63 (549)
T 2z81_A 3 SCDASGV-CDG----------RS----RSF-TSIPSGLT--AAMKSLDLSFNKITYI-GHGDLRACANLQVLILKSSRIN 63 (549)
T ss_dssp EECTTSE-EEC----------TT----SCC-SSCCSCCC--TTCCEEECCSSCCCEE-CSSTTSSCTTCCEEECTTSCCC
T ss_pred cCCCCce-EEC----------CC----Ccc-ccccccCC--CCccEEECcCCccCcc-ChhhhhcCCcccEEECCCCCcC
Confidence 4999998 853 22 333 35666554 7999999999999875 6788999999999999999999
Q ss_pred CCCCccccCCCCCcEEeccCccCCCCcchHHhhCCCCCCCEEEcCCCCCCCC-ccccccccccCCCCCCeEEccCCCCCC
Q 042537 114 GPIPSQLGNLSRLKYLDLSYINLNKSRDWLRIIDKLPSLRTLNLEHCHLPPI-IPSDLLHLNFSTSSLGALYLFENSLSS 192 (789)
Q Consensus 114 ~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~-~~~~~~~~~l~~~~L~~L~l~~n~l~~ 192 (789)
+..|.+|+++++|++|+|++|++++. .|..++++++|++|++++|.+.+. .+ ..+.++ ++
T Consensus 64 ~~~~~~~~~l~~L~~L~Ls~n~l~~~--~~~~~~~l~~L~~L~Ls~n~l~~~~~~--~~~~~l--~~------------- 124 (549)
T 2z81_A 64 TIEGDAFYSLGSLEHLDLSDNHLSSL--SSSWFGPLSSLKYLNLMGNPYQTLGVT--SLFPNL--TN------------- 124 (549)
T ss_dssp EECTTTTTTCTTCCEEECTTSCCCSC--CHHHHTTCTTCCEEECTTCCCSSSCSS--CSCTTC--TT-------------
T ss_pred ccChhhccccccCCEEECCCCccCcc--CHHHhccCCCCcEEECCCCcccccchh--hhhhcc--CC-------------
Confidence 88889999999999999999999986 456799999999999999998753 23 122333 44
Q ss_pred CchhHHHhhcCCCcEEEccCCC-CcccCchhhhcCCCCcEEECCCCCccEEecCCCcCcccchhhhhCCCCCCEEEccCC
Q 042537 193 SIYPWLFNISSKLVVLDLDSNL-LQGSLLEPFDRMVSLRTLYLGFNELEELFLGKNRLNGTINQWLSRMYKLDALSLSGN 271 (789)
Q Consensus 193 ~~~~~~~~~~~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~L~~n~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n 271 (789)
|++|++++|. +....+..|.++++|++|+++ +|.+++..|..++.+++|++|++++|
T Consensus 125 ------------L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~----------~n~l~~~~~~~l~~l~~L~~L~l~~n 182 (549)
T 2z81_A 125 ------------LQTLRIGNVETFSEIRRIDFAGLTSLNELEIK----------ALSLRNYQSQSLKSIRDIHHLTLHLS 182 (549)
T ss_dssp ------------CCEEEEEESSSCCEECTTTTTTCCEEEEEEEE----------ETTCCEECTTTTTTCSEEEEEEEECS
T ss_pred ------------ccEEECCCCccccccCHhhhhcccccCeeecc----------CCcccccChhhhhccccCceEecccC
Confidence 5555555554 333333455556666665555 44444455556666666666666666
Q ss_pred CCCCccChhhhhcCCCCcEEEccCCcccccccCCCCCcccceeEeccCccCCCCCchhccCCCCccEEEccCCcCCCCcc
Q 042537 272 SLTGVVTESVFSELSNLKALHLDDNSFTLKFSHDWIPPFQLIIILLGSCQMGPHFPKWLQTQNQIEVLDISDAGISDTVP 351 (789)
Q Consensus 272 ~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~n~i~~~~~ 351 (789)
.+. .++...+..+++|++|++++|++.+.... .......+++|+.|++++|.+++..+
T Consensus 183 ~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~---------------------~~~~~~~~~~L~~L~l~~n~l~~~~~ 240 (549)
T 2z81_A 183 ESA-FLLEIFADILSSVRYLELRDTNLARFQFS---------------------PLPVDEVSSPMKKLAFRGSVLTDESF 240 (549)
T ss_dssp BST-THHHHHHHSTTTBSEEEEESCBCTTCCCC---------------------CCSSCCCCCCCCEEEEESCEEEHHHH
T ss_pred ccc-ccchhhHhhcccccEEEccCCcccccccc---------------------ccchhhhhhcccceeccccccchhHH
Confidence 664 44544455566677777766666532100 00112234566666666666655444
Q ss_pred hhHhh---hccCCCeeeeccccccccCCCCCCCCCCCCCEEEccCCcccccCCCCCCCCcEEEcCCCcCccccchhcccC
Q 042537 352 DWFWD---LSHTIADFNLSNNHIKGKLPNLSLRFDPFSSSIDISSNYFEGLIPPLPSNASVLNLSRNKFSESISFLCSIN 428 (789)
Q Consensus 352 ~~~~~---~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~ 428 (789)
..+.. ..++++.+++++|.+.+. +.... .........
T Consensus 241 ~~l~~~~~~~~~L~~l~l~~~~~~~~-~~~~~---------------~~~~~~~~l------------------------ 280 (549)
T 2z81_A 241 NELLKLLRYILELSEVEFDDCTLNGL-GDFNP---------------SESDVVSEL------------------------ 280 (549)
T ss_dssp HHHHGGGGGCTTCCEEEEESCEEECC-SCCCC---------------CTTTCCCCC------------------------
T ss_pred HHHHHHhhhhcccccccccccccccc-ccccc---------------cchhhhhhh------------------------
Confidence 43322 122444444444444321 00000 000001112
Q ss_pred CCCCCEEEcCCCccccC-----CCcccccCCCCcEEEcCCCcCcccCCccc-cccCcccEEEccCCeeeeeCC---cCcc
Q 042537 429 GHKLEFLDLSNNILSGR-----LPDCWMQFDRLAVLSLANNFFSGKIPKSM-GFLHSIQTLSLYNNSLIGELP---SFFK 499 (789)
Q Consensus 429 ~~~L~~L~Ls~n~l~~~-----~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~---~~~~ 499 (789)
++++.|++.++.+... .+..+....+|+.|++++|++. .+|..+ ..+++|++|++++|++.+..| ..+.
T Consensus 281 -~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~ 358 (549)
T 2z81_A 281 -GKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKG 358 (549)
T ss_dssp -TTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTT
T ss_pred -cccccccccccccchhhhcccchhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccCCccccccccchhhhh
Confidence 3344444444433211 1222334566777777777776 455444 467778888888888776543 3467
Q ss_pred CCCCCcEEeCCCCcccccCch--hhhhcCCCCcEEEcCCCcccccCCCCccCCCcCceEeccCCcccccCCccccccccC
Q 042537 500 SCSQLILMDLGKNGLSGEIPT--WIGEGLPKLVVLSLKSNKFHGNIPFQVCQLSYIQILDLSLNNISGIIPKCLNNFTGM 577 (789)
Q Consensus 500 ~l~~L~~L~ls~n~l~~~~p~--~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L 577 (789)
.+++|++|++++|+++ .++. ..+..+++|++|++++|+++ .+|..+..+++|++|++++|++++. |..+
T Consensus 359 ~l~~L~~L~Ls~N~l~-~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~~l-~~~~------ 429 (549)
T 2z81_A 359 AWPSLQTLVLSQNHLR-SMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRVV-KTCI------ 429 (549)
T ss_dssp SSTTCCEEECTTSCCC-CHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCSCC-CTTS------
T ss_pred ccccCcEEEccCCccc-ccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCcccc-cchh------
Confidence 7888888888888887 4442 33447889999999999988 5777888889999999999988743 2211
Q ss_pred cccCCCccccccCcccccccccccccccceeEEEeeccccccccccCceeEEEcccCccccccchhhhccccCcEEEccC
Q 042537 578 AQKSSSNLAITSNYTFERQGIEFLESYVDNVVLTWKGSQHEYRSTLGLVKILDFSMNKLSGTIPEEIMDLVGLVALNLSR 657 (789)
Q Consensus 578 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~ 657 (789)
.+.|+.||+++|++++.+ ..+++|++|+|++
T Consensus 430 ---------------------------------------------~~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~ 460 (549)
T 2z81_A 430 ---------------------------------------------PQTLEVLDVSNNNLDSFS----LFLPRLQELYISR 460 (549)
T ss_dssp ---------------------------------------------CTTCSEEECCSSCCSCCC----CCCTTCCEEECCS
T ss_pred ---------------------------------------------cCCceEEECCCCChhhhc----ccCChhcEEECCC
Confidence 123589999999998653 5789999999999
Q ss_pred CcceeecCcccccCCCCCEEeCCCCcccccCchhhhcCCCCCeEeccCCcccccCCCCCc
Q 042537 658 NNLTGQITPKIDQLKSLDFLDLSQNQFVGGIPSSLCQLSRLSVMNLSYNNLSGKIPLGTQ 717 (789)
Q Consensus 658 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~ 717 (789)
|+++ .+|. ...+++|+.|||++|++++.+|..|..+++|++|++++|++.|.+|....
T Consensus 461 N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~~~ 518 (549)
T 2z81_A 461 NKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDY 518 (549)
T ss_dssp SCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHHHHHH
T ss_pred CccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCccHHH
Confidence 9998 6776 57899999999999999999999999999999999999999999885433
No 15
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=2.9e-47 Score=440.92 Aligned_cols=530 Identities=21% Similarity=0.184 Sum_probs=387.9
Q ss_pred ccCccccCCCCCCEEeCCCCCCCCCCCcccccCCCCCCEEecCCCcCCCCCCccccCCCCCcEEeccCccCCCCcchHHh
Q 042537 66 TISPSLLKLYHLRHLDLSENDFSGSRIPEFIGSLNKLRYLSLSSAEFEGPIPSQLGNLSRLKYLDLSYINLNKSRDWLRI 145 (789)
Q Consensus 66 ~l~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 145 (789)
.+|+.+. +++++|||++|+|+.+ .+..|.++++|++|+|++|+|+++.|++|.++++|++|+|++|++++++ +..
T Consensus 45 ~vP~~lp--~~~~~LdLs~N~i~~l-~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~--~~~ 119 (635)
T 4g8a_A 45 KIPDNLP--FSTKNLDLSFNPLRHL-GSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA--LGA 119 (635)
T ss_dssp SCCSSSC--TTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEEC--GGG
T ss_pred ccCCCCC--cCCCEEEeeCCCCCCC-CHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCC--HHH
Confidence 4555442 4789999999999965 5678999999999999999999888889999999999999999999863 367
Q ss_pred hCCCCCCCEEEcCCCCCCCCccccccccccCCCCCCeEEccCCCCCCC-chhHHHhhcCCCcEEEccCCCCcccCchhhh
Q 042537 146 IDKLPSLRTLNLEHCHLPPIIPSDLLHLNFSTSSLGALYLFENSLSSS-IYPWLFNISSKLVVLDLDSNLLQGSLLEPFD 224 (789)
Q Consensus 146 l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~~~L~~L~l~~n~l~~~-~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~ 224 (789)
|.++++|++|++++|++++..+ ..+.++ ++|++|++++|.+++. +|..+..+ ++|++|++++|++++..+..|.
T Consensus 120 f~~L~~L~~L~Ls~N~l~~l~~--~~~~~L--~~L~~L~Ls~N~l~~~~~~~~~~~l-~~L~~L~L~~N~l~~~~~~~l~ 194 (635)
T 4g8a_A 120 FSGLSSLQKLVAVETNLASLEN--FPIGHL--KTLKELNVAHNLIQSFKLPEYFSNL-TNLEHLDLSSNKIQSIYCTDLR 194 (635)
T ss_dssp GTTCTTCCEEECTTSCCCCSTT--CCCTTC--TTCCEEECCSSCCCCCCCCGGGGGC-TTCCEEECCSSCCCEECGGGGH
T ss_pred hcCCCCCCEEECCCCcCCCCCh--hhhhcC--cccCeeccccCccccCCCchhhccc-hhhhhhcccCcccccccccccc
Confidence 9999999999999999998777 445566 8999999999999764 44444444 4899999999999998888887
Q ss_pred cCCCCc----EEECCCCCccEEecCCCcCcccchhhhhCCCCCCEEEccCCCCCCccChhhhhcCCCCcEEEccCCcccc
Q 042537 225 RMVSLR----TLYLGFNELEELFLGKNRLNGTINQWLSRMYKLDALSLSGNSLTGVVTESVFSELSNLKALHLDDNSFTL 300 (789)
Q Consensus 225 ~l~~L~----~L~L~~n~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~ 300 (789)
.+.+++ .++++ .|.+....+..+. ...++.+++.+|.....+....+..+..++...+..+....
T Consensus 195 ~L~~l~~~~~~~~ls----------~n~l~~i~~~~~~-~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~ 263 (635)
T 4g8a_A 195 VLHQMPLLNLSLDLS----------LNPMNFIQPGAFK-EIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRN 263 (635)
T ss_dssp HHHTCTTCCCEEECT----------TCCCCEECTTTTT-TCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTT
T ss_pred chhhhhhhhhhhhcc----------cCcccccCccccc-chhhhhhhhhcccccccccchhhcCCccccccccccccccc
Confidence 766554 45565 4444444444443 34577888888877655666678888888777765443321
Q ss_pred cccCCCCCcccceeEeccCccCCCCCchhccCCCCccEEEccCCcCCCCcch--hHhhhccCCCeeeeccccccccCCCC
Q 042537 301 KFSHDWIPPFQLIIILLGSCQMGPHFPKWLQTQNQIEVLDISDAGISDTVPD--WFWDLSHTIADFNLSNNHIKGKLPNL 378 (789)
Q Consensus 301 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~n~i~~~~~~--~~~~~~~~L~~L~l~~n~l~~~~p~~ 378 (789)
... +.......+.....+...++..+........ ........++.+.+.++.+... +
T Consensus 264 ~~~------------------l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~-~-- 322 (635)
T 4g8a_A 264 EGN------------------LEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERV-K-- 322 (635)
T ss_dssp SCC------------------CSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEEC-G--
T ss_pred ccc------------------cccccccccccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccc-c--
Confidence 110 0011122223333333333333222111110 0111223455555555544421 1
Q ss_pred CCCCCCCCCEEEccCCcccccCCCCCCCCcEEEcCCCcCccccchhcccCCCCCCEEEcCCCccccCCCcccccCCCCcE
Q 042537 379 SLRFDPFSSSIDISSNYFEGLIPPLPSNASVLNLSRNKFSESISFLCSINGHKLEFLDLSNNILSGRLPDCWMQFDRLAV 458 (789)
Q Consensus 379 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 458 (789)
.+.....++.+++.+|.+.+..+..+ ..|+.++++.|.+.... .+..+++|+.
T Consensus 323 ~~~~~~~L~~L~l~~~~~~~~~~~~l-------------------------~~L~~l~l~~n~~~~~~--~~~~l~~L~~ 375 (635)
T 4g8a_A 323 DFSYNFGWQHLELVNCKFGQFPTLKL-------------------------KSLKRLTFTSNKGGNAF--SEVDLPSLEF 375 (635)
T ss_dssp GGGSCCCCSEEEEESCEESSCCCCBC-------------------------TTCCEEEEESCCSCCBC--CCCBCTTCCE
T ss_pred ccccchhhhhhhcccccccCcCcccc-------------------------hhhhhcccccccCCCCc--cccccccccc
Confidence 12233345555555554443322222 56777777777665322 3456788888
Q ss_pred EEcCCCcCcc--cCCccccccCcccEEEccCCeeeeeCCcCccCCCCCcEEeCCCCcccccCchhhhhcCCCCcEEEcCC
Q 042537 459 LSLANNFFSG--KIPKSMGFLHSIQTLSLYNNSLIGELPSFFKSCSQLILMDLGKNGLSGEIPTWIGEGLPKLVVLSLKS 536 (789)
Q Consensus 459 L~L~~n~l~~--~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~l~~L~~L~L~~ 536 (789)
+++++|.+.. ..+..+..+.+|+.+++..|.+... +..+..+++|+.++++.|......+...+..+++++.++++.
T Consensus 376 L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~-~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~ 454 (635)
T 4g8a_A 376 LDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITM-SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISH 454 (635)
T ss_dssp EECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEE-CSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTT
T ss_pred chhhccccccccccccchhhhhhhhhhhccccccccc-cccccccccccchhhhhccccccccccccccccccccccccc
Confidence 8888888753 3455666778899999999988754 556788999999999999888677766667889999999999
Q ss_pred CcccccCCCCccCCCcCceEeccCCccc-ccCCccccccccCcccCCCccccccCcccccccccccccccceeEEEeecc
Q 042537 537 NKFHGNIPFQVCQLSYIQILDLSLNNIS-GIIPKCLNNFTGMAQKSSSNLAITSNYTFERQGIEFLESYVDNVVLTWKGS 615 (789)
Q Consensus 537 n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 615 (789)
|.+.+..+..+..+++|+.|++++|++. +..|..|..+++|
T Consensus 455 n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L-------------------------------------- 496 (635)
T 4g8a_A 455 THTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNL-------------------------------------- 496 (635)
T ss_dssp SCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTC--------------------------------------
T ss_pred cccccccccccccchhhhhhhhhhcccccccCchhhhhcccc--------------------------------------
Confidence 9999888888999999999999999754 4456666665555
Q ss_pred ccccccccCceeEEEcccCccccccchhhhccccCcEEEccCCcceeecCcccccCCCCCEEeCCCCcccccCchhhhcC
Q 042537 616 QHEYRSTLGLVKILDFSMNKLSGTIPEEIMDLVGLVALNLSRNNLTGQITPKIDQLKSLDFLDLSQNQFVGGIPSSLCQL 695 (789)
Q Consensus 616 ~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l 695 (789)
++|||++|++++..|..|.++++|++|+|++|+|++..|..|+.+++|+.|||++|+|++..|..|..+
T Consensus 497 -----------~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l 565 (635)
T 4g8a_A 497 -----------TFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHF 565 (635)
T ss_dssp -----------CEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCC
T ss_pred -----------CEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhh
Confidence 899999999999999999999999999999999998888899999999999999999999999999988
Q ss_pred -CCCCeEeccCCcccccCCC
Q 042537 696 -SRLSVMNLSYNNLSGKIPL 714 (789)
Q Consensus 696 -~~L~~L~ls~N~l~~~~p~ 714 (789)
++|++|++++|++.|.+..
T Consensus 566 ~~~L~~L~L~~Np~~C~C~~ 585 (635)
T 4g8a_A 566 PSSLAFLNLTQNDFACTCEH 585 (635)
T ss_dssp CTTCCEEECTTCCBCCSGGG
T ss_pred hCcCCEEEeeCCCCcccCCc
Confidence 6899999999999998874
No 16
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=9.4e-47 Score=430.28 Aligned_cols=495 Identities=22% Similarity=0.215 Sum_probs=349.2
Q ss_pred CCcEEEEEcCCCCCCCCcccccCccccCCCCCCEEeCCCCCCCCCCCcccccCCCCCCEEecCCCcCCCCCCccccCCCC
Q 042537 46 TGHVIVLDLQVLVHSEPLKGTISPSLLKLYHLRHLDLSENDFSGSRIPEFIGSLNKLRYLSLSSAEFEGPIPSQLGNLSR 125 (789)
Q Consensus 46 ~~~v~~l~L~~~~~~~~l~~~l~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~ 125 (789)
..++++|+|++ +.+.+..+.+|.++++|++|++++|++++. .+..|+++++|++|++++|.+++..|.+|+++++
T Consensus 27 ~~~l~~L~Ls~----n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 101 (570)
T 2z63_A 27 PFSTKNLDLSF----NPLRHLGSYSFFSFPELQVLDLSRCEIQTI-EDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSS 101 (570)
T ss_dssp CSSCCEEECCS----CCCCEECTTTTTTCSSCCEEECTTCCCCEE-CTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTT
T ss_pred cccccEEEccC----CccCccChhHhhCCCCceEEECCCCcCCcc-CcccccCchhCCEEeCcCCcCCccCHhhhcCccc
Confidence 45799999999 788877778999999999999999999865 6778999999999999999999888899999999
Q ss_pred CcEEeccCccCCCCcchHHhhCCCCCCCEEEcCCCCCCCC-ccccccccccCCCCCCeEEccCCCCCCCchhHHHhhcCC
Q 042537 126 LKYLDLSYINLNKSRDWLRIIDKLPSLRTLNLEHCHLPPI-IPSDLLHLNFSTSSLGALYLFENSLSSSIYPWLFNISSK 204 (789)
Q Consensus 126 L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~-~~~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~ 204 (789)
|++|++++|+++.++. ..++++++|++|++++|.+.+. .| ..+.++ ++|++|++++|.+++..+..+..+. +
T Consensus 102 L~~L~L~~n~l~~l~~--~~~~~l~~L~~L~L~~n~l~~~~lp--~~~~~l--~~L~~L~l~~n~l~~~~~~~~~~l~-~ 174 (570)
T 2z63_A 102 LQKLVAVETNLASLEN--FPIGHLKTLKELNVAHNLIQSFKLP--EYFSNL--TNLEHLDLSSNKIQSIYCTDLRVLH-Q 174 (570)
T ss_dssp CCEEECTTSCCCCSTT--CSCTTCTTCCEEECCSSCCCCCCCC--GGGGGC--TTCCEEECTTSCCCEECGGGGHHHH-T
T ss_pred cccccccccccccCCC--ccccccccccEEecCCCccceecCh--hhhccc--CCCCEEeCcCCccceecHHHccchh-c
Confidence 9999999999998643 3589999999999999999874 46 345556 9999999999999876666666655 7
Q ss_pred C----cEEEccCCCCcccCchhhhcCCCCcEEECCCCCccEEecCCCcCcccchhhhhCCCCCCEEEccCCCCCC-----
Q 042537 205 L----VVLDLDSNLLQGSLLEPFDRMVSLRTLYLGFNELEELFLGKNRLNGTINQWLSRMYKLDALSLSGNSLTG----- 275 (789)
Q Consensus 205 L----~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~----- 275 (789)
| +.|++++|.+++..+..|... +|+.|++++|.. -....+..+..+++++.+.+....+..
T Consensus 175 L~~~~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~---------~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~ 244 (570)
T 2z63_A 175 MPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFD---------SLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLE 244 (570)
T ss_dssp CTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCS---------CTTHHHHHHHTTTTCEEEEEEEEECCCCSSCE
T ss_pred cchhhhhcccCCCCceecCHHHhccC-cceeEecccccc---------cccchhhhhcCccccceeeeccccccCchhhh
Confidence 7 899999999999888888766 788888875421 112456778888888887775433221
Q ss_pred ccChhhhhcCCCCcEEEccCCcccccccCCCCCcccceeEeccCc-cCCCCCchhccCCCCccEEEccCCcCCCCcchhH
Q 042537 276 VVTESVFSELSNLKALHLDDNSFTLKFSHDWIPPFQLIIILLGSC-QMGPHFPKWLQTQNQIEVLDISDAGISDTVPDWF 354 (789)
Q Consensus 276 ~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~l~~l~~L~~L~ls~n~i~~~~~~~~ 354 (789)
.++...+..++++ .++.+.+.++ .+.+..+..+..+++|+.|++++|.+.+ +|.++
T Consensus 245 ~~~~~~~~~l~~l----------------------~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~-l~~~~ 301 (570)
T 2z63_A 245 KFDKSALEGLCNL----------------------TIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER-VKDFS 301 (570)
T ss_dssp ECCTTTTGGGGGS----------------------EEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEECS-CCBCC
T ss_pred hcchhhhcccccc----------------------chhhhhhhcchhhhhhchhhhcCcCcccEEEecCccchh-hhhhh
Confidence 1222223333222 2333444444 3444555666666677777777776653 44444
Q ss_pred hhhccCCCeeeeccccccccCCCCCCCCCCCCCEEEccCCcccccCCCCCCCCcEEEcCCCcCccccchhcccCCCCCCE
Q 042537 355 WDLSHTIADFNLSNNHIKGKLPNLSLRFDPFSSSIDISSNYFEGLIPPLPSNASVLNLSRNKFSESISFLCSINGHKLEF 434 (789)
Q Consensus 355 ~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~ 434 (789)
... +|+.|++++|.+. .+|. ..++.|+.+++++|.+.+.. +. ..+++|++
T Consensus 302 ~~~--~L~~L~l~~n~~~-~l~~---~~l~~L~~L~l~~n~~~~~~---------------------~~---~~~~~L~~ 351 (570)
T 2z63_A 302 YNF--GWQHLELVNCKFG-QFPT---LKLKSLKRLTFTSNKGGNAF---------------------SE---VDLPSLEF 351 (570)
T ss_dssp SCC--CCSEEEEESCBCS-SCCB---CBCSSCCEEEEESCBSCCBC---------------------CC---CBCTTCCE
T ss_pred ccC--CccEEeeccCccc-ccCc---ccccccCEEeCcCCcccccc---------------------cc---ccCCCCCE
Confidence 433 6777777777666 4443 23444555555555444332 22 11278999
Q ss_pred EEcCCCccccCC--CcccccCCCCcEEEcCCCcCcccCCccccccCcccEEEccCCeeeeeCC-cCccCCCCCcEEeCCC
Q 042537 435 LDLSNNILSGRL--PDCWMQFDRLAVLSLANNFFSGKIPKSMGFLHSIQTLSLYNNSLIGELP-SFFKSCSQLILMDLGK 511 (789)
Q Consensus 435 L~Ls~n~l~~~~--~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~ls~ 511 (789)
|++++|.+++.. +..+..+++|++|++++|.+.+..+. +..+++|++|++++|.+.+..+ ..+..+++|++|+
T Consensus 352 L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~--- 427 (570)
T 2z63_A 352 LDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLD--- 427 (570)
T ss_dssp EECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEE---
T ss_pred EeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEEe---
Confidence 999999988553 56677788888888888877754433 6666667777777766665443 2344444455554
Q ss_pred CcccccCchhhhhcCCCCcEEEcCCCcccccCCCCccCCCcCceEeccCCccc-ccCCccccccccCcccCCCccccccC
Q 042537 512 NGLSGEIPTWIGEGLPKLVVLSLKSNKFHGNIPFQVCQLSYIQILDLSLNNIS-GIIPKCLNNFTGMAQKSSSNLAITSN 590 (789)
Q Consensus 512 n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~l~~~~~~~~~~ 590 (789)
+++|++.+..|..+.++++|++|++++|+++ +.+|..+..+++|
T Consensus 428 ----------------------l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L------------- 472 (570)
T 2z63_A 428 ----------------------ISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNL------------- 472 (570)
T ss_dssp ----------------------CTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTC-------------
T ss_pred ----------------------CcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCC-------------
Confidence 4445444444555555566666666666655 3445444444444
Q ss_pred cccccccccccccccceeEEEeeccccccccccCceeEEEcccCccccccchhhhccccCcEEEccCCcceeecCccccc
Q 042537 591 YTFERQGIEFLESYVDNVVLTWKGSQHEYRSTLGLVKILDFSMNKLSGTIPEEIMDLVGLVALNLSRNNLTGQITPKIDQ 670 (789)
Q Consensus 591 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~ 670 (789)
+.|++++|++++..|..|..+++|++|+|++|++++.+|..|..
T Consensus 473 ------------------------------------~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 516 (570)
T 2z63_A 473 ------------------------------------TFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDR 516 (570)
T ss_dssp ------------------------------------CEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTT
T ss_pred ------------------------------------CEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhc
Confidence 67777777777777788888888999999999998877778888
Q ss_pred CCCCCEEeCCCCcccccCch
Q 042537 671 LKSLDFLDLSQNQFVGGIPS 690 (789)
Q Consensus 671 l~~L~~L~Ls~N~l~~~~p~ 690 (789)
+++|+.|++++|++++..|.
T Consensus 517 l~~L~~L~l~~N~~~~~~~~ 536 (570)
T 2z63_A 517 LTSLQKIWLHTNPWDCSCPR 536 (570)
T ss_dssp CTTCCEEECCSSCBCCCTTT
T ss_pred ccCCcEEEecCCcccCCCcc
Confidence 99999999999999887664
No 17
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=3e-46 Score=420.49 Aligned_cols=466 Identities=20% Similarity=0.184 Sum_probs=260.3
Q ss_pred CEEeCCCCCCCCCCCcccccCCCCCCEEecCCCcCCCCCCccccCCCCCcEEeccCccCCCCcchHHhhCCCCCCCEEEc
Q 042537 78 RHLDLSENDFSGSRIPEFIGSLNKLRYLSLSSAEFEGPIPSQLGNLSRLKYLDLSYINLNKSRDWLRIIDKLPSLRTLNL 157 (789)
Q Consensus 78 ~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L 157 (789)
++||+++|+++ .+|..+. ++|++|++++|.+++..|.+|.++++|++|+|++|+++++ .|..|+++++|++|++
T Consensus 3 ~~l~ls~n~l~--~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~--~~~~~~~l~~L~~L~L 76 (520)
T 2z7x_B 3 FLVDRSKNGLI--HVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYL--DISVFKFNQELEYLDL 76 (520)
T ss_dssp CEEECTTSCCS--SCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEE--EGGGGTTCTTCCEEEC
T ss_pred ceEecCCCCcc--ccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCc--ChHHhhcccCCCEEec
Confidence 45677777766 3555444 6677777777777666666677777777777777776664 3466677777777777
Q ss_pred CCCCCCCCccccccccccCCCCCCeEEccCCCCCC-CchhHHHhhcCCCcEEEccCCCCcccCchhhhcCCCC--cEEEC
Q 042537 158 EHCHLPPIIPSDLLHLNFSTSSLGALYLFENSLSS-SIYPWLFNISSKLVVLDLDSNLLQGSLLEPFDRMVSL--RTLYL 234 (789)
Q Consensus 158 ~~n~l~~~~~~~~~~~~l~~~~L~~L~l~~n~l~~-~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L--~~L~L 234 (789)
++|.++. +|. . .+ ++|++|++++|.+++ .+|..+..+. +|++|++++|.+++ ..+..+++| +.|++
T Consensus 77 s~N~l~~-lp~-~---~l--~~L~~L~L~~N~l~~~~~p~~~~~l~-~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l 145 (520)
T 2z7x_B 77 SHNKLVK-ISC-H---PT--VNLKHLDLSFNAFDALPICKEFGNMS-QLKFLGLSTTHLEK---SSVLPIAHLNISKVLL 145 (520)
T ss_dssp CSSCCCE-EEC-C---CC--CCCSEEECCSSCCSSCCCCGGGGGCT-TCCEEEEEESSCCG---GGGGGGTTSCEEEEEE
T ss_pred CCCceee-cCc-c---cc--CCccEEeccCCccccccchhhhccCC-cceEEEecCcccch---hhccccccceeeEEEe
Confidence 7776663 221 1 22 455555555555543 2333333333 55555555555543 234444444 44444
Q ss_pred CCCCccEEecCCCcC--cccchhhhhCCC-CCCEEEccCCCCCCccChhhhhcCCCCcEEEccCCcccccccCCCCCccc
Q 042537 235 GFNELEELFLGKNRL--NGTINQWLSRMY-KLDALSLSGNSLTGVVTESVFSELSNLKALHLDDNSFTLKFSHDWIPPFQ 311 (789)
Q Consensus 235 ~~n~L~~L~L~~n~l--~~~~~~~l~~l~-~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~ 311 (789)
+ +|.+ .+..|..+..+. +...+++++|.+.+.++...+..+++|+.+++++|.......
T Consensus 146 ~----------~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-------- 207 (520)
T 2z7x_B 146 V----------LGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCS-------- 207 (520)
T ss_dssp E----------ECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTH--------
T ss_pred e----------cccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccc--------
Confidence 4 3333 334444444433 222344555555544444444455555555555443100000
Q ss_pred ceeEeccCccCCCCCchhccCCCCccEEEccCCcCCCCcchhHhhhccCCCeeeeccccccccCCCCCCCCCCCCCEEEc
Q 042537 312 LIIILLGSCQMGPHFPKWLQTQNQIEVLDISDAGISDTVPDWFWDLSHTIADFNLSNNHIKGKLPNLSLRFDPFSSSIDI 391 (789)
Q Consensus 312 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l 391 (789)
.+.+.+| .+..+++|+.|++++|.+++..+..+...
T Consensus 208 ---------~~~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~~---------------------------------- 243 (520)
T 2z7x_B 208 ---------YFLSILA-KLQTNPKLSNLTLNNIETTWNSFIRILQL---------------------------------- 243 (520)
T ss_dssp ---------HHHHHHH-GGGGCTTCCEEEEEEEEEEHHHHHHHHHH----------------------------------
T ss_pred ---------eeecchh-hhccccchhhccccccccCHHHHHHHHHH----------------------------------
Confidence 0111112 34445555555555554443222211110
Q ss_pred cCCcccccCCCCCCCCcEEEcCCCcCccccchhcccCCCCCCEEEcCCCccccCCCccc-----ccCCCCcEEEcCCCcC
Q 042537 392 SSNYFEGLIPPLPSNASVLNLSRNKFSESISFLCSINGHKLEFLDLSNNILSGRLPDCW-----MQFDRLAVLSLANNFF 466 (789)
Q Consensus 392 ~~n~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~-----~~l~~L~~L~L~~n~l 466 (789)
.. .++|++|++++|++++.+|..+ .++++|+.+++++|.+
T Consensus 244 --------------------------------~~---~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~ 288 (520)
T 2z7x_B 244 --------------------------------VW---HTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF 288 (520)
T ss_dssp --------------------------------HH---TSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC
T ss_pred --------------------------------hh---hCcccEEEeecccccCccccchhhcccccCceeEeccccccce
Confidence 00 0234444444444444444444 4455555555555555
Q ss_pred cccCC-cccccc---CcccEEEccCCeeeeeCCcCccCCCCCcEEeCCCCcccccCchhhhhcCCCCcEEEcCCCcccc-
Q 042537 467 SGKIP-KSMGFL---HSIQTLSLYNNSLIGELPSFFKSCSQLILMDLGKNGLSGEIPTWIGEGLPKLVVLSLKSNKFHG- 541 (789)
Q Consensus 467 ~~~~~-~~~~~l---~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~- 541 (789)
.+| ..+..+ .+|+.|++++|.+.... .+..+++|++|++++|++++.+|..+. .+++|++|++++|++++
T Consensus 289 --~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~L~~N~l~~l 363 (520)
T 2z7x_B 289 --GFPQSYIYEIFSNMNIKNFTVSGTRMVHML--CPSKISPFLHLDFSNNLLTDTVFENCG-HLTELETLILQMNQLKEL 363 (520)
T ss_dssp --CSCTHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCC-CCSSCCEEECCSSCCCBH
T ss_pred --ecchhhhhcccccCceeEEEcCCCcccccc--chhhCCcccEEEeECCccChhhhhhhc-cCCCCCEEEccCCccCcc
Confidence 222 223222 34566666665554221 124555666666666666654555444 46666666666666654
Q ss_pred -cCCCCccCCCcCceEeccCCcccccCCc-cccccccCcccCCCccccccCcccccccccccccccceeEEEeecccccc
Q 042537 542 -NIPFQVCQLSYIQILDLSLNNISGIIPK-CLNNFTGMAQKSSSNLAITSNYTFERQGIEFLESYVDNVVLTWKGSQHEY 619 (789)
Q Consensus 542 -~~~~~~~~l~~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 619 (789)
.+|..+..+++|++|++++|++++.+|. .+..+++
T Consensus 364 ~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~------------------------------------------- 400 (520)
T 2z7x_B 364 SKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKS------------------------------------------- 400 (520)
T ss_dssp HHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTT-------------------------------------------
T ss_pred ccchHHHhhCCCCCEEECCCCcCCcccccchhccCcc-------------------------------------------
Confidence 3344566666777777777776653332 2333333
Q ss_pred ccccCceeEEEcccCccccccchhhhccccCcEEEccCCcceeecCcccccCCCCCEEeCCCCcccccCchhhhcCCCCC
Q 042537 620 RSTLGLVKILDFSMNKLSGTIPEEIMDLVGLVALNLSRNNLTGQITPKIDQLKSLDFLDLSQNQFVGGIPSSLCQLSRLS 699 (789)
Q Consensus 620 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~ 699 (789)
|+.|++++|++++.+|..+. ++|++|+|++|+++ .+|..+..+++|+.|+|++|+++...+..+..+++|+
T Consensus 401 ------L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~ 471 (520)
T 2z7x_B 401 ------LLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQ 471 (520)
T ss_dssp ------CCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred ------CCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCccCHHHhccCCccc
Confidence 37778888877777666554 68899999999998 7888888899999999999999854434488899999
Q ss_pred eEeccCCcccccCCC
Q 042537 700 VMNLSYNNLSGKIPL 714 (789)
Q Consensus 700 ~L~ls~N~l~~~~p~ 714 (789)
+|++++|+++|.++.
T Consensus 472 ~L~l~~N~~~c~c~~ 486 (520)
T 2z7x_B 472 KIWLHTNPWDCSCPR 486 (520)
T ss_dssp EEECCSSCBCCCHHH
T ss_pred EEECcCCCCcccCCc
Confidence 999999999988774
No 18
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=3.4e-45 Score=415.15 Aligned_cols=487 Identities=19% Similarity=0.183 Sum_probs=301.1
Q ss_pred CEEeCCCCCCCCCCCcccccCCCCCCEEecCCCcCCCCCCccccCCCCCcEEeccCccCCCCcchHHhhCCCCCCCEEEc
Q 042537 78 RHLDLSENDFSGSRIPEFIGSLNKLRYLSLSSAEFEGPIPSQLGNLSRLKYLDLSYINLNKSRDWLRIIDKLPSLRTLNL 157 (789)
Q Consensus 78 ~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L 157 (789)
.+.|.++++++ .+|..+. ++|++|++++|.+++..|.+|.++++|++|++++|+++++ .|..|+++++|++|++
T Consensus 8 ~~c~~~~~~l~--~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~--~~~~~~~l~~L~~L~L 81 (549)
T 2z81_A 8 GVCDGRSRSFT--SIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTI--EGDAFYSLGSLEHLDL 81 (549)
T ss_dssp SEEECTTSCCS--SCCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEE--CTTTTTTCTTCCEEEC
T ss_pred ceEECCCCccc--cccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCcc--ChhhccccccCCEEEC
Confidence 34566666666 3454433 5666666666666655556666666666666666665553 1234444444444444
Q ss_pred CCCCCCCCccccccccccCCCCCCeEEccCCCCCCCchhHHHhhcCCCcEEEccCCCCcccCchhhhcCCCCcEEECCCC
Q 042537 158 EHCHLPPIIPSDLLHLNFSTSSLGALYLFENSLSSSIYPWLFNISSKLVVLDLDSNLLQGSLLEPFDRMVSLRTLYLGFN 237 (789)
Q Consensus 158 ~~n~l~~~~~~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n 237 (789)
++| .+++..+..|+++++|++|++++|
T Consensus 82 s~n-----------------------------------------------------~l~~~~~~~~~~l~~L~~L~Ls~n 108 (549)
T 2z81_A 82 SDN-----------------------------------------------------HLSSLSSSWFGPLSSLKYLNLMGN 108 (549)
T ss_dssp TTS-----------------------------------------------------CCCSCCHHHHTTCTTCCEEECTTC
T ss_pred CCC-----------------------------------------------------ccCccCHHHhccCCCCcEEECCCC
Confidence 444 333333344444444444444422
Q ss_pred CccEEecCCCcCcc-cchhhhhCCCCCCEEEccCCCCCCccChhhhhcCCCCcEEEccCCcccccccCCCCCcccceeEe
Q 042537 238 ELEELFLGKNRLNG-TINQWLSRMYKLDALSLSGNSLTGVVTESVFSELSNLKALHLDDNSFTLKFSHDWIPPFQLIIIL 316 (789)
Q Consensus 238 ~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~ 316 (789)
+ +++ ..|..++++++|++|++++|.+.+.++...|.++++|++|++++|.+++..+..+
T Consensus 109 ~----------l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l---------- 168 (549)
T 2z81_A 109 P----------YQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSL---------- 168 (549)
T ss_dssp C----------CSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTT----------
T ss_pred c----------ccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhh----------
Confidence 2 222 1233455555666666666654335554445556666666666555554333333
Q ss_pred ccCccCCCCCchhccCCCCccEEEccCCcCCCCcchhHhhhccCCCeeeeccccccccC--CCCCCCCCCCCCEEEccCC
Q 042537 317 LGSCQMGPHFPKWLQTQNQIEVLDISDAGISDTVPDWFWDLSHTIADFNLSNNHIKGKL--PNLSLRFDPFSSSIDISSN 394 (789)
Q Consensus 317 l~~~~~~~~~~~~l~~l~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~--p~~~~~~~~~L~~L~l~~n 394 (789)
..+++|++|++++|.+. ..+.++....++|+.|++++|.+++.. |......++.++.+++++|
T Consensus 169 --------------~~l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n 233 (549)
T 2z81_A 169 --------------KSIRDIHHLTLHLSESA-FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGS 233 (549)
T ss_dssp --------------TTCSEEEEEEEECSBST-THHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESC
T ss_pred --------------hccccCceEecccCccc-ccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceecccc
Confidence 33333344444433332 222222222334444555544444210 1001122333444444444
Q ss_pred cccccCCCCCCCCcEEEcCCCcCccccchhcccCCCCCCEEEcCCCccccCC------CcccccCCCCcEEEcCCCcCcc
Q 042537 395 YFEGLIPPLPSNASVLNLSRNKFSESISFLCSINGHKLEFLDLSNNILSGRL------PDCWMQFDRLAVLSLANNFFSG 468 (789)
Q Consensus 395 ~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~------~~~~~~l~~L~~L~L~~n~l~~ 468 (789)
.+++..+.. .... ....++|+.+++++|.+.+.. ...+..+.+|+.|++.++.+..
T Consensus 234 ~l~~~~~~~-----------------l~~~-~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~ 295 (549)
T 2z81_A 234 VLTDESFNE-----------------LLKL-LRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQ 295 (549)
T ss_dssp EEEHHHHHH-----------------HHGG-GGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSC
T ss_pred ccchhHHHH-----------------HHHH-hhhhccccccccccccccccccccccchhhhhhhcccccccccccccch
Confidence 333221100 0000 011256777777777766431 2345678899999999988763
Q ss_pred c-----CCccccccCcccEEEccCCeeeeeCCcCc-cCCCCCcEEeCCCCcccccCchh--hhhcCCCCcEEEcCCCccc
Q 042537 469 K-----IPKSMGFLHSIQTLSLYNNSLIGELPSFF-KSCSQLILMDLGKNGLSGEIPTW--IGEGLPKLVVLSLKSNKFH 540 (789)
Q Consensus 469 ~-----~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~ls~n~l~~~~p~~--~~~~l~~L~~L~L~~n~l~ 540 (789)
. .+..+...++|++|++++|.+. .+|..+ ..+++|++|++++|++.+.+|.. ....+++|++|++++|+++
T Consensus 296 ~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~ 374 (549)
T 2z81_A 296 FYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLR 374 (549)
T ss_dssp GGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCC
T ss_pred hhhcccchhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCccc
Confidence 2 1222344678999999999997 556554 67999999999999999776543 1236899999999999998
Q ss_pred ccCC--CCccCCCcCceEeccCCcccccCCccccccccCcccCCCccccccCcccccccccccccccceeEEEeeccccc
Q 042537 541 GNIP--FQVCQLSYIQILDLSLNNISGIIPKCLNNFTGMAQKSSSNLAITSNYTFERQGIEFLESYVDNVVLTWKGSQHE 618 (789)
Q Consensus 541 ~~~~--~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 618 (789)
+..+ ..+..+++|++|++++|+++ .+|..+..+++|
T Consensus 375 ~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L----------------------------------------- 412 (549)
T 2z81_A 375 SMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKM----------------------------------------- 412 (549)
T ss_dssp CHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTC-----------------------------------------
T ss_pred ccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccc-----------------------------------------
Confidence 6532 45788999999999999998 456555554444
Q ss_pred cccccCceeEEEcccCccccccchhhhccccCcEEEccCCcceeecCcccccCCCCCEEeCCCCcccccCchhhhcCCCC
Q 042537 619 YRSTLGLVKILDFSMNKLSGTIPEEIMDLVGLVALNLSRNNLTGQITPKIDQLKSLDFLDLSQNQFVGGIPSSLCQLSRL 698 (789)
Q Consensus 619 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L 698 (789)
+.|++++|+++ .+|..+. ++|++|+|++|++++.+ ..+++|++|+|++|+++ .+|. ...+++|
T Consensus 413 --------~~L~Ls~N~l~-~l~~~~~--~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L 475 (549)
T 2z81_A 413 --------RFLNLSSTGIR-VVKTCIP--QTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLK-TLPD-ASLFPVL 475 (549)
T ss_dssp --------CEEECTTSCCS-CCCTTSC--TTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCS-SCCC-GGGCTTC
T ss_pred --------cEEECCCCCcc-cccchhc--CCceEEECCCCChhhhc----ccCChhcEEECCCCccC-cCCC-cccCccC
Confidence 89999999998 4554442 68999999999999643 57899999999999999 5665 4679999
Q ss_pred CeEeccCCcccccCCCC-CccccccccccCCCCCCCCCC
Q 042537 699 SVMNLSYNNLSGKIPLG-TQLQSFNASVYAGNPELCGLP 736 (789)
Q Consensus 699 ~~L~ls~N~l~~~~p~~-~~~~~~~~~~~~~n~~lc~~~ 736 (789)
++|++++|++++.+|.. ..+..+....+.+||+.|+|+
T Consensus 476 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 476 LVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp CEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred CEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence 99999999999887753 456677778899999999887
No 19
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=1.1e-43 Score=410.70 Aligned_cols=531 Identities=18% Similarity=0.183 Sum_probs=367.0
Q ss_pred EeCCCCCCCCCCCcccccCCCCCCEEecCCCcCCCCCCccccCCCCCcEEeccCccCCCCcchHHhhCCCCCCCEEEcCC
Q 042537 80 LDLSENDFSGSRIPEFIGSLNKLRYLSLSSAEFEGPIPSQLGNLSRLKYLDLSYINLNKSRDWLRIIDKLPSLRTLNLEH 159 (789)
Q Consensus 80 L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~ 159 (789)
.+.++.+++ .+|..+. +++++|||++|+|+++.|.+|.++++|++|+|++|+|++++ +.+|.++++|++|+|++
T Consensus 36 ~~c~~~~l~--~vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~--~~~f~~L~~L~~L~Ls~ 109 (635)
T 4g8a_A 36 YQCMELNFY--KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIE--DGAYQSLSHLSTLILTG 109 (635)
T ss_dssp EECTTSCCS--SCCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEEC--TTTTTTCTTCCEEECTT
T ss_pred EECCCCCcC--ccCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcC--hhHhcCCCCCCEEEccC
Confidence 344555666 4676553 58999999999999888889999999999999999999863 36799999999999999
Q ss_pred CCCCCCccccccccccCCCCCCeEEccCCCCCCCchhHHHhhcCCCcEEEccCCCCcccCchhhhcCCCCcEEECCCCCc
Q 042537 160 CHLPPIIPSDLLHLNFSTSSLGALYLFENSLSSSIYPWLFNISSKLVVLDLDSNLLQGSLLEPFDRMVSLRTLYLGFNEL 239 (789)
Q Consensus 160 n~l~~~~~~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~L 239 (789)
|++++..+. .+.++ + +|++|++++|+++++.+..|+++++|++|++++|.+
T Consensus 110 N~l~~l~~~--~f~~L--~-------------------------~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l 160 (635)
T 4g8a_A 110 NPIQSLALG--AFSGL--S-------------------------SLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLI 160 (635)
T ss_dssp CCCCEECGG--GGTTC--T-------------------------TCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCC
T ss_pred CcCCCCCHH--HhcCC--C-------------------------CCCEEECCCCcCCCCChhhhhcCcccCeeccccCcc
Confidence 988765542 22222 3 566666666666655555666666666666663333
Q ss_pred cEEecCCCcCcccchhhhhCCCCCCEEEccCCCCCCccChhhhhcCCCC----cEEEccCCcccccccCCCCCcccceeE
Q 042537 240 EELFLGKNRLNGTINQWLSRMYKLDALSLSGNSLTGVVTESVFSELSNL----KALHLDDNSFTLKFSHDWIPPFQLIII 315 (789)
Q Consensus 240 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L----~~L~L~~n~i~~~~~~~~~~~~~L~~L 315 (789)
+.+ ..|..++.+++|++|++++|++++ ++...|..+.++ ..++++.|.+....+..+ ....+..+
T Consensus 161 ~~~---------~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~-~~~~~~~l 229 (635)
T 4g8a_A 161 QSF---------KLPEYFSNLTNLEHLDLSSNKIQS-IYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF-KEIRLHKL 229 (635)
T ss_dssp CCC---------CCCGGGGGCTTCCEEECCSSCCCE-ECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTT-TTCEEEEE
T ss_pred ccC---------CCchhhccchhhhhhcccCccccc-cccccccchhhhhhhhhhhhcccCcccccCcccc-cchhhhhh
Confidence 221 235556666777777777777763 333345444333 356666666654333222 22344455
Q ss_pred eccCccCCC-CCchhccCCCCccEEEccCCcCCC------CcchhHhhhccCCCeeeeccccccccCCCCCCCCCCCCCE
Q 042537 316 LLGSCQMGP-HFPKWLQTQNQIEVLDISDAGISD------TVPDWFWDLSHTIADFNLSNNHIKGKLPNLSLRFDPFSSS 388 (789)
Q Consensus 316 ~l~~~~~~~-~~~~~l~~l~~L~~L~ls~n~i~~------~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~ 388 (789)
.+.++.... ..+..+..+..++...+..+.... .....+.. ...+....+..+...
T Consensus 230 ~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~-~~~l~~~~l~~~~~~---------------- 292 (635)
T 4g8a_A 230 TLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEG-LCNLTIEEFRLAYLD---------------- 292 (635)
T ss_dssp EEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGG-GGGSEEEEEEEECCC----------------
T ss_pred hhhcccccccccchhhcCCccccccccccccccccccccccccccccc-ccchhhhhhhhhhhc----------------
Confidence 555543321 223445566666655544322211 11111111 112222222221111
Q ss_pred EEccCCcccccCC--CCCCCCcEEEcCCCcCccccchhcccCCCCCCEEEcCCCccccCCCcccccCCCCcEEEcCCCcC
Q 042537 389 IDISSNYFEGLIP--PLPSNASVLNLSRNKFSESISFLCSINGHKLEFLDLSNNILSGRLPDCWMQFDRLAVLSLANNFF 466 (789)
Q Consensus 389 L~l~~n~l~~~~~--~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l 466 (789)
....+... ....+++.+++.++.+....+.... ..++.|++++|.+....+ ..+..|+.+++..|.+
T Consensus 293 -----~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~---~~L~~L~l~~~~~~~~~~---~~l~~L~~l~l~~n~~ 361 (635)
T 4g8a_A 293 -----YYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYN---FGWQHLELVNCKFGQFPT---LKLKSLKRLTFTSNKG 361 (635)
T ss_dssp -----SCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSC---CCCSEEEEESCEESSCCC---CBCTTCCEEEEESCCS
T ss_pred -----ccccchhhhhhhhcccccccccccccccccccccc---hhhhhhhcccccccCcCc---ccchhhhhcccccccC
Confidence 00011111 1145677777777766654443222 679999999998875544 3467788999999987
Q ss_pred cccCCccccccCcccEEEccCCeeee--eCCcCccCCCCCcEEeCCCCcccccCchhhhhcCCCCcEEEcCCCcccccCC
Q 042537 467 SGKIPKSMGFLHSIQTLSLYNNSLIG--ELPSFFKSCSQLILMDLGKNGLSGEIPTWIGEGLPKLVVLSLKSNKFHGNIP 544 (789)
Q Consensus 467 ~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~ 544 (789)
.... ....+++|+.+++++|.+.. ..+..+..+.+|+.+++..|.+. .++..+. .+++|+.++++.|......+
T Consensus 362 ~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~-~~~~~~~-~l~~L~~l~l~~~~~~~~~~ 437 (635)
T 4g8a_A 362 GNAF--SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVI-TMSSNFL-GLEQLEHLDFQHSNLKQMSE 437 (635)
T ss_dssp CCBC--CCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEE-EECSCCT-TCTTCCEEECTTSEEESTTS
T ss_pred CCCc--ccccccccccchhhccccccccccccchhhhhhhhhhhccccccc-ccccccc-ccccccchhhhhcccccccc
Confidence 7433 34568899999999998853 45666778889999999999887 4555444 68999999999988776554
Q ss_pred -CCccCCCcCceEeccCCcccccCCccccccccCcccCCCccccccCcccccccccccccccceeEEEeecccccccccc
Q 042537 545 -FQVCQLSYIQILDLSLNNISGIIPKCLNNFTGMAQKSSSNLAITSNYTFERQGIEFLESYVDNVVLTWKGSQHEYRSTL 623 (789)
Q Consensus 545 -~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 623 (789)
..+..+++++.+++++|.+.+..+..+..++.+
T Consensus 438 ~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L---------------------------------------------- 471 (635)
T 4g8a_A 438 FSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSL---------------------------------------------- 471 (635)
T ss_dssp SCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTC----------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccchhh----------------------------------------------
Confidence 457789999999999999998887777666555
Q ss_pred CceeEEEcccCccc-cccchhhhccccCcEEEccCCcceeecCcccccCCCCCEEeCCCCcccccCchhhhcCCCCCeEe
Q 042537 624 GLVKILDFSMNKLS-GTIPEEIMDLVGLVALNLSRNNLTGQITPKIDQLKSLDFLDLSQNQFVGGIPSSLCQLSRLSVMN 702 (789)
Q Consensus 624 ~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 702 (789)
+.|++++|++. +.+|..|..+++|++|+|++|++++.+|..|+++++|++|+|++|+|++..|..|..+++|++||
T Consensus 472 ---~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~ 548 (635)
T 4g8a_A 472 ---EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLD 548 (635)
T ss_dssp ---CEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEE
T ss_pred ---hhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEE
Confidence 89999999854 46788999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCcccccCCCCC-c-cccccccccCCCCCCCCCCC
Q 042537 703 LSYNNLSGKIPLGT-Q-LQSFNASVYAGNPELCGLPL 737 (789)
Q Consensus 703 ls~N~l~~~~p~~~-~-~~~~~~~~~~~n~~lc~~~l 737 (789)
+++|++++..|..- . ..++....+.||||.|+|.+
T Consensus 549 Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~~ 585 (635)
T 4g8a_A 549 YSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEH 585 (635)
T ss_dssp CTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGGG
T ss_pred CCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCCc
Confidence 99999999888642 2 24567778999999999874
No 20
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=9.5e-45 Score=408.25 Aligned_cols=462 Identities=18% Similarity=0.179 Sum_probs=301.6
Q ss_pred CEEEcCCCCCCCCccccccccccCCCCCCeEEccCCCCCCCchhHHHhhcCCCcEEEccCCCCcccCchhhhcCCCCcEE
Q 042537 153 RTLNLEHCHLPPIIPSDLLHLNFSTSSLGALYLFENSLSSSIYPWLFNISSKLVVLDLDSNLLQGSLLEPFDRMVSLRTL 232 (789)
Q Consensus 153 ~~L~L~~n~l~~~~~~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 232 (789)
++|++++|.++.++. .+. ++|++|++++|.+++..+..+..+. +|++|++++|++++..|..|.++++|++|
T Consensus 3 ~~l~ls~n~l~~ip~---~~~----~~L~~L~Ls~n~i~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 74 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPK---DLS----QKTTILNISQNYISELWTSDILSLS-KLRILIISHNRIQYLDISVFKFNQELEYL 74 (520)
T ss_dssp CEEECTTSCCSSCCC---SCC----TTCSEEECCSSCCCCCCHHHHTTCT-TCCEEECCSSCCCEEEGGGGTTCTTCCEE
T ss_pred ceEecCCCCcccccc---ccc----ccccEEECCCCcccccChhhccccc-cccEEecCCCccCCcChHHhhcccCCCEE
Confidence 456777776664322 111 4555555555555543333333332 55555555555555555555555555555
Q ss_pred ECCCCCccEEecCCCcCcccchhhhhCCCCCCEEEccCCCCCC-ccChhhhhcCCCCcEEEccCCcccccccCCCCCccc
Q 042537 233 YLGFNELEELFLGKNRLNGTINQWLSRMYKLDALSLSGNSLTG-VVTESVFSELSNLKALHLDDNSFTLKFSHDWIPPFQ 311 (789)
Q Consensus 233 ~L~~n~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~-~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~ 311 (789)
++++|+++.+ |.. .+++|++|++++|.+++ .+|. .|+++++|++|++++|++..
T Consensus 75 ~Ls~N~l~~l-----------p~~--~l~~L~~L~L~~N~l~~~~~p~-~~~~l~~L~~L~L~~n~l~~----------- 129 (520)
T 2z7x_B 75 DLSHNKLVKI-----------SCH--PTVNLKHLDLSFNAFDALPICK-EFGNMSQLKFLGLSTTHLEK----------- 129 (520)
T ss_dssp ECCSSCCCEE-----------ECC--CCCCCSEEECCSSCCSSCCCCG-GGGGCTTCCEEEEEESSCCG-----------
T ss_pred ecCCCceeec-----------Ccc--ccCCccEEeccCCccccccchh-hhccCCcceEEEecCcccch-----------
Confidence 5554333322 111 34555555555555543 1222 35555555555555555442
Q ss_pred ceeEeccCccCCCCCchhccCCCCc--cEEEccCCcC--CCCcchhHhhhccCCCeeeeccccccccCCCCCCCCCCCCC
Q 042537 312 LIIILLGSCQMGPHFPKWLQTQNQI--EVLDISDAGI--SDTVPDWFWDLSHTIADFNLSNNHIKGKLPNLSLRFDPFSS 387 (789)
Q Consensus 312 L~~L~l~~~~~~~~~~~~l~~l~~L--~~L~ls~n~i--~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~ 387 (789)
..+..+++| ++|++++|.+ .+..|..+..+......+++++|.+.+.++...+..++.|+
T Consensus 130 ----------------~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~ 193 (520)
T 2z7x_B 130 ----------------SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLE 193 (520)
T ss_dssp ----------------GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEE
T ss_pred ----------------hhccccccceeeEEEeecccccccccccccccccccceEEEEeccCcchhhhhhhhhhccccee
Confidence 223344444 6666666665 44555444332222334455556555555554444555455
Q ss_pred EEEccCCcccccCCCCCCCCcEEEcCCCcCccccchhcccCCCCCCEEEcCCCccccCCCcccc---cCCCCcEEEcCCC
Q 042537 388 SIDISSNYFEGLIPPLPSNASVLNLSRNKFSESISFLCSINGHKLEFLDLSNNILSGRLPDCWM---QFDRLAVLSLANN 464 (789)
Q Consensus 388 ~L~l~~n~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~---~l~~L~~L~L~~n 464 (789)
.+++++|.-.... ..+.+.++... ..++|+.|++++|.+++..+..+. ..++|++|++++|
T Consensus 194 ~L~l~~n~~~~~~--------------~~~~~~~~~l~--~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n 257 (520)
T 2z7x_B 194 LSNIKCVLEDNKC--------------SYFLSILAKLQ--TNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNV 257 (520)
T ss_dssp ECCEEECCSTTTT--------------HHHHHHHHGGG--GCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEE
T ss_pred ecccccccccccc--------------ceeecchhhhc--cccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecc
Confidence 5554444300000 00222233222 227888888888887754322221 2468999999999
Q ss_pred cCcccCCccc-----cccCcccEEEccCCeeeeeCC-cCccCC---CCCcEEeCCCCcccccCchhhhhcCCCCcEEEcC
Q 042537 465 FFSGKIPKSM-----GFLHSIQTLSLYNNSLIGELP-SFFKSC---SQLILMDLGKNGLSGEIPTWIGEGLPKLVVLSLK 535 (789)
Q Consensus 465 ~l~~~~~~~~-----~~l~~L~~L~L~~n~l~~~~~-~~~~~l---~~L~~L~ls~n~l~~~~p~~~~~~l~~L~~L~L~ 535 (789)
++++.+|..+ ..+++|+.+++++|.+ .+| ..+..+ .+|+.|++++|.+. .++. ...+++|++|+++
T Consensus 258 ~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~-~~~~--~~~l~~L~~L~Ls 332 (520)
T 2z7x_B 258 KLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMV-HMLC--PSKISPFLHLDFS 332 (520)
T ss_dssp EEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCC-CCCC--CSSCCCCCEEECC
T ss_pred cccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCccc-cccc--hhhCCcccEEEeE
Confidence 9998888888 8899999999999998 444 444443 67999999999987 4432 1368999999999
Q ss_pred CCcccccCCCCccCCCcCceEeccCCcccc--cCCccccccccCcccCCCccccccCcccccccccccccccceeEEEee
Q 042537 536 SNKFHGNIPFQVCQLSYIQILDLSLNNISG--IIPKCLNNFTGMAQKSSSNLAITSNYTFERQGIEFLESYVDNVVLTWK 613 (789)
Q Consensus 536 ~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~--~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 613 (789)
+|++++..|..+..+++|++|++++|++++ ..|..+..+++|
T Consensus 333 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L------------------------------------ 376 (520)
T 2z7x_B 333 NNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSL------------------------------------ 376 (520)
T ss_dssp SSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTC------------------------------------
T ss_pred CCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCC------------------------------------
Confidence 999998889999999999999999999986 334445554444
Q ss_pred ccccccccccCceeEEEcccCccccccchh-hhccccCcEEEccCCcceeecCcccccCCCCCEEeCCCCcccccCchhh
Q 042537 614 GSQHEYRSTLGLVKILDFSMNKLSGTIPEE-IMDLVGLVALNLSRNNLTGQITPKIDQLKSLDFLDLSQNQFVGGIPSSL 692 (789)
Q Consensus 614 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~-~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l 692 (789)
+.|++++|++++.+|.. +..+++|++|++++|++++.+|..+. ++|+.|++++|+++ .+|..+
T Consensus 377 -------------~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~ 440 (520)
T 2z7x_B 377 -------------QQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQV 440 (520)
T ss_dssp -------------CEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGG
T ss_pred -------------CEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhh
Confidence 99999999999856654 88899999999999999988887765 79999999999999 778878
Q ss_pred hcCCCCCeEeccCCcccccCCCC--CccccccccccCCCCCCCCCCC
Q 042537 693 CQLSRLSVMNLSYNNLSGKIPLG--TQLQSFNASVYAGNPELCGLPL 737 (789)
Q Consensus 693 ~~l~~L~~L~ls~N~l~~~~p~~--~~~~~~~~~~~~~n~~lc~~~l 737 (789)
..+++|++|++++|+++ .+|.. ..+..+....+.+||+.|+|++
T Consensus 441 ~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~c~~ 486 (520)
T 2z7x_B 441 VKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCPR 486 (520)
T ss_dssp GGCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred hcCCCCCEEECCCCcCC-ccCHHHhccCCcccEEECcCCCCcccCCc
Confidence 89999999999999999 56654 3455677778999999998764
No 21
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=3.2e-44 Score=416.69 Aligned_cols=448 Identities=19% Similarity=0.207 Sum_probs=318.1
Q ss_pred CCCCEEeCCCCCCCCCCCcccccCCCCCCEEec-CCCcCCCCCCccccCC----CCCc--EEe---------c-cCccCC
Q 042537 75 YHLRHLDLSENDFSGSRIPEFIGSLNKLRYLSL-SSAEFEGPIPSQLGNL----SRLK--YLD---------L-SYINLN 137 (789)
Q Consensus 75 ~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L-s~n~i~~~~p~~~~~l----~~L~--~L~---------L-s~n~l~ 137 (789)
.+++.|+|+++.+.+. +|..+++|++|++|+| ++|.+.|..|-..... ...+ .+. . ....+.
T Consensus 323 ~~V~~L~Ls~~~L~G~-ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s 401 (876)
T 4ecn_A 323 GRVTGLSLAGFGAKGR-VPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLS 401 (876)
T ss_dssp SCEEEEECTTTCCEEE-ECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSC
T ss_pred CCEEEEECccCCCCCc-CchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhh
Confidence 5789999999999886 8999999999999999 8888776533221111 0000 000 0 000011
Q ss_pred CCcchHHhh-----------CCCCCCCEEEcCC--CCCCCCccccccccccCCCCCCeEEccCCCCCC------------
Q 042537 138 KSRDWLRII-----------DKLPSLRTLNLEH--CHLPPIIPSDLLHLNFSTSSLGALYLFENSLSS------------ 192 (789)
Q Consensus 138 ~~~~~~~~l-----------~~l~~L~~L~L~~--n~l~~~~~~~~~~~~l~~~~L~~L~l~~n~l~~------------ 192 (789)
.. ++..+ .....++.+.+.. |.+++ +| ..+.++ ++|+.|++++|.+++
T Consensus 402 ~l--~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP--~~l~~L--~~L~~L~Ls~N~Lsg~~i~~~~~~~s~ 474 (876)
T 4ecn_A 402 DL--LQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-IS--KAIQRL--TKLQIIYFANSPFTYDNIAVDWEDANS 474 (876)
T ss_dssp HH--HHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-EC--GGGGGC--TTCCEEEEESCCCCGGGBSSSCSCTTS
T ss_pred HH--HHHHhhhCccccccccccccchhhceeccccCcccc-hh--HHHhcC--CCCCEEECcCCcCCCCccccccccccc
Confidence 00 11111 1223344444443 77777 66 346666 999999999999998
Q ss_pred -----CchhHHH-hhcCCCcEEEccCCCCcccCchhhhcCCCCcEEECCCCCccEEecCCCc-Ccc-cchhhhhCCC---
Q 042537 193 -----SIYPWLF-NISSKLVVLDLDSNLLQGSLLEPFDRMVSLRTLYLGFNELEELFLGKNR-LNG-TINQWLSRMY--- 261 (789)
Q Consensus 193 -----~~~~~~~-~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~L~~L~L~~n~-l~~-~~~~~l~~l~--- 261 (789)
.+|..+. ...++|++|+|++|.+.+.+|..|.++++|+.|+++ +|+ +++ .+|..+++++
T Consensus 475 n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls----------~N~~lsg~~iP~~i~~L~~~~ 544 (876)
T 4ecn_A 475 DYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIA----------CNRGISAAQLKADWTRLADDE 544 (876)
T ss_dssp HHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECT----------TCTTSCHHHHHHHHHHHHHCT
T ss_pred ccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECc----------CCCCcccccchHHHHhhhhcc
Confidence 3888874 334499999999999999999999999999999999 676 777 7887776655
Q ss_pred ----CCCEEEccCCCCCCccCh-hhhhcCCCCcEEEccCCcccccccCCCCCcccceeEeccCccCCCCCchhccCCCCc
Q 042537 262 ----KLDALSLSGNSLTGVVTE-SVFSELSNLKALHLDDNSFTLKFSHDWIPPFQLIIILLGSCQMGPHFPKWLQTQNQI 336 (789)
Q Consensus 262 ----~L~~L~L~~n~l~~~~~~-~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L 336 (789)
+|++|+|++|.+. .+|. ..|.++++|++|++++|++. .+| .+..+++|
T Consensus 545 ~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-------------------------~lp-~~~~L~~L 597 (876)
T 4ecn_A 545 DTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-------------------------HLE-AFGTNVKL 597 (876)
T ss_dssp TTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-------------------------BCC-CCCTTSEE
T ss_pred cccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-------------------------cch-hhcCCCcc
Confidence 9999999999999 7776 46999999999999999887 345 57788999
Q ss_pred cEEEccCCcCCCCcchhHhhhccCCCeeeeccccccccCCCCCCCCCCCCCEEEccCCcccccCCCCCCCCcEEEcCCCc
Q 042537 337 EVLDISDAGISDTVPDWFWDLSHTIADFNLSNNHIKGKLPNLSLRFDPFSSSIDISSNYFEGLIPPLPSNASVLNLSRNK 416 (789)
Q Consensus 337 ~~L~ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~ 416 (789)
+.|++++|.+. .+|..+..+. +
T Consensus 598 ~~L~Ls~N~l~-~lp~~l~~l~-~-------------------------------------------------------- 619 (876)
T 4ecn_A 598 TDLKLDYNQIE-EIPEDFCAFT-D-------------------------------------------------------- 619 (876)
T ss_dssp SEEECCSSCCS-CCCTTSCEEC-T--------------------------------------------------------
T ss_pred eEEECcCCccc-cchHHHhhcc-c--------------------------------------------------------
Confidence 99999999987 4444332221 1
Q ss_pred CccccchhcccCCCCCCEEEcCCCccccCCCcccccCCC--CcEEEcCCCcCcccCCcc---cc--ccCcccEEEccCCe
Q 042537 417 FSESISFLCSINGHKLEFLDLSNNILSGRLPDCWMQFDR--LAVLSLANNFFSGKIPKS---MG--FLHSIQTLSLYNNS 489 (789)
Q Consensus 417 i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~--L~~L~L~~n~l~~~~~~~---~~--~l~~L~~L~L~~n~ 489 (789)
+|+.|++++|.++ .+|..+..+.. |+.|++++|++.+.+|.. +. .+++|+.|++++|.
T Consensus 620 --------------~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~ 684 (876)
T 4ecn_A 620 --------------QVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNE 684 (876)
T ss_dssp --------------TCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSC
T ss_pred --------------cCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCc
Confidence 1333333333333 33333333322 444444444444333321 11 23467777777777
Q ss_pred eeeeCCcCccCCCCCcEEeCCCCcccccCchhhhhcC-------CCCcEEEcCCCcccccCCCCcc--CCCcCceEeccC
Q 042537 490 LIGELPSFFKSCSQLILMDLGKNGLSGEIPTWIGEGL-------PKLVVLSLKSNKFHGNIPFQVC--QLSYIQILDLSL 560 (789)
Q Consensus 490 l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~l-------~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~Ls~ 560 (789)
++...+..+..+++|+.|++++|+++ .+|..++... ++|+.|+|++|+++ .+|..+. .+++|+.|+|++
T Consensus 685 L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~ 762 (876)
T 4ecn_A 685 IQKFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSY 762 (876)
T ss_dssp CCSCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCS
T ss_pred CCccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCC
Confidence 77433333456777888888888877 7777665332 38999999999999 6788876 899999999999
Q ss_pred CcccccCCccccccccCcccCCCccccccCcccccccccccccccceeEEEeeccccccccccCceeEEEcccCcccccc
Q 042537 561 NNISGIIPKCLNNFTGMAQKSSSNLAITSNYTFERQGIEFLESYVDNVVLTWKGSQHEYRSTLGLVKILDFSMNKLSGTI 640 (789)
Q Consensus 561 N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 640 (789)
|++++ +|..+..+++| +.|+|++|+
T Consensus 763 N~L~~-lp~~l~~L~~L-------------------------------------------------~~L~Ls~N~----- 787 (876)
T 4ecn_A 763 NCFSS-FPTQPLNSSQL-------------------------------------------------KAFGIRHQR----- 787 (876)
T ss_dssp SCCSS-CCCGGGGCTTC-------------------------------------------------CEEECCCCB-----
T ss_pred CCCCc-cchhhhcCCCC-------------------------------------------------CEEECCCCC-----
Confidence 99886 56666655555 788888886
Q ss_pred chhhhccccCcEEEccCCcceeecCcccccCCCCCEEeCCCCcccccCchhhhcCCCCCeEeccCCcccccCC
Q 042537 641 PEEIMDLVGLVALNLSRNNLTGQITPKIDQLKSLDFLDLSQNQFVGGIPSSLCQLSRLSVMNLSYNNLSGKIP 713 (789)
Q Consensus 641 p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p 713 (789)
++++|++.+.+|..+..+++|+.|+|++|++ +.+|..+. ++|+.||+++|++...-+
T Consensus 788 -------------~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i~~ 844 (876)
T 4ecn_A 788 -------------DAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISIDV 844 (876)
T ss_dssp -------------CTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEEEC
T ss_pred -------------CcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCccCh
Confidence 6788999999999999999999999999999 68888765 699999999999875433
No 22
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=7.9e-44 Score=407.95 Aligned_cols=373 Identities=18% Similarity=0.221 Sum_probs=280.3
Q ss_pred CCCCCCccChhhhhcCCCCcEEEccCCccccc-----------------ccCCCC--CcccceeEeccCccCCCCCchhc
Q 042537 270 GNSLTGVVTESVFSELSNLKALHLDDNSFTLK-----------------FSHDWI--PPFQLIIILLGSCQMGPHFPKWL 330 (789)
Q Consensus 270 ~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~-----------------~~~~~~--~~~~L~~L~l~~~~~~~~~~~~l 330 (789)
.|++++ +|. .++++++|++|++++|.+++. .+..+. .+.+|++|++++|.+.+.+|..+
T Consensus 192 ~n~l~~-ip~-~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l 269 (636)
T 4eco_A 192 SNNITF-VSK-AVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFL 269 (636)
T ss_dssp SCEEEE-ECG-GGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTT
T ss_pred cCCCcc-CCH-HHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHH
Confidence 466665 666 477777788888887777764 566666 67777777777777777777777
Q ss_pred cCCCCccEEEccCCc-CCC-CcchhHhhhccCCCeeeeccccccccCCCCCCCCCCCCCEEEccCCcccccCCCCCCCCc
Q 042537 331 QTQNQIEVLDISDAG-ISD-TVPDWFWDLSHTIADFNLSNNHIKGKLPNLSLRFDPFSSSIDISSNYFEGLIPPLPSNAS 408 (789)
Q Consensus 331 ~~l~~L~~L~ls~n~-i~~-~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~ 408 (789)
.++++|++|++++|+ +++ .+|..+..+. .+..+++|++|++++|
T Consensus 270 ~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~--------------------~~~~l~~L~~L~L~~n-------------- 315 (636)
T 4eco_A 270 KALPEMQLINVACNRGISGEQLKDDWQALA--------------------DAPVGEKIQIIYIGYN-------------- 315 (636)
T ss_dssp TTCSSCCEEECTTCTTSCHHHHHHHHHHHH--------------------HSGGGGTCCEEECCSS--------------
T ss_pred hcCCCCCEEECcCCCCCccccchHHHHhhh--------------------ccccCCCCCEEECCCC--------------
Confidence 777778888887777 766 6666655431 0011122333333333
Q ss_pred EEEcCCCcCccccchhcccCCCCCCEEEcCCCccccCCCcccccCCCCcEEEcCCCcCcccCCccccccCc-ccEEEccC
Q 042537 409 VLNLSRNKFSESISFLCSINGHKLEFLDLSNNILSGRLPDCWMQFDRLAVLSLANNFFSGKIPKSMGFLHS-IQTLSLYN 487 (789)
Q Consensus 409 ~L~l~~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~-L~~L~L~~ 487 (789)
+++..+.......+++|++|++++|+++|.+| .|..+++|+.|++++|+++ .+|..+..+++ |++|++++
T Consensus 316 -------~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~ 386 (636)
T 4eco_A 316 -------NLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAH 386 (636)
T ss_dssp -------CCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCS
T ss_pred -------cCCccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccC
Confidence 33211110011122789999999999998888 8999999999999999999 78888999999 99999999
Q ss_pred CeeeeeCCcCccCCC--CCcEEeCCCCcccccCchhhhh------cCCCCcEEEcCCCcccccCCCCccCCCcCceEecc
Q 042537 488 NSLIGELPSFFKSCS--QLILMDLGKNGLSGEIPTWIGE------GLPKLVVLSLKSNKFHGNIPFQVCQLSYIQILDLS 559 (789)
Q Consensus 488 n~l~~~~~~~~~~l~--~L~~L~ls~n~l~~~~p~~~~~------~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 559 (789)
|.++ .+|..+..++ +|++|++++|.+.+.+|..+.. .+++|++|++++|++++..+..+..+++|++|+++
T Consensus 387 N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls 465 (636)
T 4eco_A 387 NKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLM 465 (636)
T ss_dssp SCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECC
T ss_pred CcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECC
Confidence 9998 6787777655 8999999999999877765531 36789999999999984433345568999999999
Q ss_pred CCcccccCCccccccccCcccCCCccccccCcccccccccccccccceeEEEeeccccccccccCceeEEEcccCccccc
Q 042537 560 LNNISGIIPKCLNNFTGMAQKSSSNLAITSNYTFERQGIEFLESYVDNVVLTWKGSQHEYRSTLGLVKILDFSMNKLSGT 639 (789)
Q Consensus 560 ~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 639 (789)
+|+++...+..+..... ....++.|+.|++++|+++ .
T Consensus 466 ~N~l~~i~~~~~~~~~~------------------------------------------~~~~l~~L~~L~Ls~N~l~-~ 502 (636)
T 4eco_A 466 GNMLTEIPKNSLKDENE------------------------------------------NFKNTYLLTSIDLRFNKLT-K 502 (636)
T ss_dssp SSCCSBCCSSSSEETTE------------------------------------------ECTTGGGCCEEECCSSCCC-B
T ss_pred CCCCCCcCHHHhccccc------------------------------------------cccccCCccEEECcCCcCC-c
Confidence 99998433333322110 0012345699999999999 7
Q ss_pred cchhhh--ccccCcEEEccCCcceeecCcccccCCCCCEEeC------CCCcccccCchhhhcCCCCCeEeccCCccccc
Q 042537 640 IPEEIM--DLVGLVALNLSRNNLTGQITPKIDQLKSLDFLDL------SQNQFVGGIPSSLCQLSRLSVMNLSYNNLSGK 711 (789)
Q Consensus 640 ~p~~~~--~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L------s~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~ 711 (789)
+|..+. .+++|+.|+|++|++++ +|..+..+++|+.|+| ++|++.+.+|..+..+++|++|++++|++ +.
T Consensus 503 lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ 580 (636)
T 4eco_A 503 LSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RK 580 (636)
T ss_dssp CCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CB
T ss_pred cChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-Cc
Confidence 888887 99999999999999997 8999999999999999 56889999999999999999999999999 78
Q ss_pred CCCCCccccccccccCCCCCCCC
Q 042537 712 IPLGTQLQSFNASVYAGNPELCG 734 (789)
Q Consensus 712 ~p~~~~~~~~~~~~~~~n~~lc~ 734 (789)
+|... ...+....+.+||..|-
T Consensus 581 ip~~~-~~~L~~L~Ls~N~l~~~ 602 (636)
T 4eco_A 581 VNEKI-TPNISVLDIKDNPNISI 602 (636)
T ss_dssp CCSCC-CTTCCEEECCSCTTCEE
T ss_pred cCHhH-hCcCCEEECcCCCCccc
Confidence 99763 36677778899998873
No 23
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=5.1e-43 Score=397.28 Aligned_cols=459 Identities=20% Similarity=0.198 Sum_probs=310.3
Q ss_pred CCCCCEEEcCCCCCCCCccccccccccCCCCCCeEEccCCCCCCCchhHHHhhcCCCcEEEccCCCCcccCchhhhcCCC
Q 042537 149 LPSLRTLNLEHCHLPPIIPSDLLHLNFSTSSLGALYLFENSLSSSIYPWLFNISSKLVVLDLDSNLLQGSLLEPFDRMVS 228 (789)
Q Consensus 149 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~ 228 (789)
+...+++++++|.+++++. ... ++|++|++++|.+++..+..+..+. +|++|++++|.+++..|.+|.++++
T Consensus 30 ~~~~~~l~ls~~~L~~ip~---~~~----~~L~~L~Ls~N~i~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~l~~ 101 (562)
T 3a79_B 30 NELESMVDYSNRNLTHVPK---DLP----PRTKALSLSQNSISELRMPDISFLS-ELRVLRLSHNRIRSLDFHVFLFNQD 101 (562)
T ss_dssp ---CCEEECTTSCCCSCCT---TSC----TTCCEEECCSSCCCCCCGGGTTTCT-TCCEEECCSCCCCEECTTTTTTCTT
T ss_pred cCCCcEEEcCCCCCccCCC---CCC----CCcCEEECCCCCccccChhhhccCC-CccEEECCCCCCCcCCHHHhCCCCC
Confidence 3344788888888776332 111 6777777777777654444444443 7777777777777777777777777
Q ss_pred CcEEECCCCCccEEecCCCcCcccchhhhhCCCCCCEEEccCCCCCCccChhhhhcCCCCcEEEccCCcccccccCCCCC
Q 042537 229 LRTLYLGFNELEELFLGKNRLNGTINQWLSRMYKLDALSLSGNSLTGVVTESVFSELSNLKALHLDDNSFTLKFSHDWIP 308 (789)
Q Consensus 229 L~~L~L~~n~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~ 308 (789)
|++|++++|+++.+ |.. .+++|++|++++|++.+.-.+..|.++++|++|++++|++... .+..
T Consensus 102 L~~L~Ls~N~l~~l-----------p~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~ 165 (562)
T 3a79_B 102 LEYLDVSHNRLQNI-----------SCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLP 165 (562)
T ss_dssp CCEEECTTSCCCEE-----------CSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGG
T ss_pred CCEEECCCCcCCcc-----------Ccc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhh
Confidence 77777775555433 222 5667777777777776321113577777777777777776542 2222
Q ss_pred cccc--eeEeccCccC--CCCCchhccCCCCccEEEccCCcCCCCcchhHhhhccCCCeeeeccccccccCCCCCCCCCC
Q 042537 309 PFQL--IIILLGSCQM--GPHFPKWLQTQNQIEVLDISDAGISDTVPDWFWDLSHTIADFNLSNNHIKGKLPNLSLRFDP 384 (789)
Q Consensus 309 ~~~L--~~L~l~~~~~--~~~~~~~l~~l~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~ 384 (789)
+.+| +.|++++|.+ .+..|..+..+. .....+++++|.+.+.++...+..++
T Consensus 166 l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~------------------------~~~l~l~l~~n~~~~~~~~~~~~~l~ 221 (562)
T 3a79_B 166 VAHLHLSCILLDLVSYHIKGGETESLQIPN------------------------TTVLHLVFHPNSLFSVQVNMSVNALG 221 (562)
T ss_dssp GTTSCEEEEEEEESSCCCCSSSCCEEEECC------------------------EEEEEEEECSSSCCCCCCEEEESSEE
T ss_pred hhhceeeEEEeecccccccccCcccccccC------------------------cceEEEEecCccchhhhhhhcccccc
Confidence 2333 5555555555 444444444332 11113344444444444443444444
Q ss_pred CCCEEEccCCc-----ccccCC--CCCCCCcEEEcCCCcCccc-----cchhcccCCCCCCEEEcCCCccccCCCccc--
Q 042537 385 FSSSIDISSNY-----FEGLIP--PLPSNASVLNLSRNKFSES-----ISFLCSINGHKLEFLDLSNNILSGRLPDCW-- 450 (789)
Q Consensus 385 ~L~~L~l~~n~-----l~~~~~--~~~~~L~~L~l~~n~i~~~-----~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~-- 450 (789)
.|+.+++++|. +.+.++ ...+.++.+++.++.+.+. .+... .++|++|++++|.+++.+|..+
T Consensus 222 ~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~---~~~L~~L~l~~n~l~~~ip~~~~~ 298 (562)
T 3a79_B 222 HLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFW---PRPVEYLNIYNLTITERIDREEFT 298 (562)
T ss_dssp EEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHT---TSSEEEEEEEEEEECSCCCCCCCC
T ss_pred eEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhh---cccccEEEEeccEeeccccchhhh
Confidence 55555555552 111111 0134556666665555432 22221 1689999999999998888877
Q ss_pred ---ccCCCCcEEEcCCCcCcccCC-ccccc---cCcccEEEccCCeeeeeCCcCccCCCCCcEEeCCCCcccccCchhhh
Q 042537 451 ---MQFDRLAVLSLANNFFSGKIP-KSMGF---LHSIQTLSLYNNSLIGELPSFFKSCSQLILMDLGKNGLSGEIPTWIG 523 (789)
Q Consensus 451 ---~~l~~L~~L~L~~n~l~~~~~-~~~~~---l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~ 523 (789)
.+++.|+.+++..+.+ .+| ..+.. ..+|++|++++|.+.... ....+++|++|++++|++++.+|..+.
T Consensus 299 ~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~ 374 (562)
T 3a79_B 299 YSETALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKMLSISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCS 374 (562)
T ss_dssp CCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCC
T ss_pred cccccchheehhhccccee--ecChhhhhhhhccCcceEEEccCCCccccc--CccCCCCceEEECCCCccccchhhhhc
Confidence 7777777788877777 344 22222 257999999999986332 236889999999999999977887776
Q ss_pred hcCCCCcEEEcCCCccccc--CCCCccCCCcCceEeccCCcccccCCc-cccccccCcccCCCccccccCcccccccccc
Q 042537 524 EGLPKLVVLSLKSNKFHGN--IPFQVCQLSYIQILDLSLNNISGIIPK-CLNNFTGMAQKSSSNLAITSNYTFERQGIEF 600 (789)
Q Consensus 524 ~~l~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~ 600 (789)
.+++|++|++++|++++. .|..+.++++|++|++++|++++.+|. .+..+++
T Consensus 375 -~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~------------------------ 429 (562)
T 3a79_B 375 -TLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAES------------------------ 429 (562)
T ss_dssp -SCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTT------------------------
T ss_pred -ccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCccc------------------------
Confidence 799999999999999863 346788999999999999999985553 3544444
Q ss_pred cccccceeEEEeeccccccccccCceeEEEcccCccccccchhhhccccCcEEEccCCcceeecCcccccCCCCCEEeCC
Q 042537 601 LESYVDNVVLTWKGSQHEYRSTLGLVKILDFSMNKLSGTIPEEIMDLVGLVALNLSRNNLTGQITPKIDQLKSLDFLDLS 680 (789)
Q Consensus 601 ~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls 680 (789)
|+.|++++|++++.+|..+. ++|++|+|++|+++ .+|..+..+++|+.|+|+
T Consensus 430 -------------------------L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~ 481 (562)
T 3a79_B 430 -------------------------ILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVA 481 (562)
T ss_dssp -------------------------CCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECC
T ss_pred -------------------------CCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECC
Confidence 49999999999988776654 78999999999999 788888899999999999
Q ss_pred CCcccccCchhhhcCCCCCeEeccCCcccccCCCC
Q 042537 681 QNQFVGGIPSSLCQLSRLSVMNLSYNNLSGKIPLG 715 (789)
Q Consensus 681 ~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~ 715 (789)
+|++++..+..+..+++|++|++++|++.|.+|..
T Consensus 482 ~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~~~ 516 (562)
T 3a79_B 482 SNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPGI 516 (562)
T ss_dssp SSCCCCCCTTSTTTCTTCCCEECCSCCBCCCHHHH
T ss_pred CCCCCCCCHHHHhcCCCCCEEEecCCCcCCCcchH
Confidence 99999544444999999999999999999988854
No 24
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=1e-41 Score=386.54 Aligned_cols=465 Identities=20% Similarity=0.213 Sum_probs=259.2
Q ss_pred EEEEcCCCCCCCCcccccCccccCCCCCCEEeCCCCCCCCCCCcccccCCCCCCEEecCCCcCCCCCCccccCCCCCcEE
Q 042537 50 IVLDLQVLVHSEPLKGTISPSLLKLYHLRHLDLSENDFSGSRIPEFIGSLNKLRYLSLSSAEFEGPIPSQLGNLSRLKYL 129 (789)
Q Consensus 50 ~~l~L~~~~~~~~l~~~l~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L 129 (789)
+++|+++ +.+.+ +|..+. ++|++|++++|.+++. .+..|.++++|++|+|++|++++..|++|.++++|++|
T Consensus 34 ~~l~ls~----~~L~~-ip~~~~--~~L~~L~Ls~N~i~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 105 (562)
T 3a79_B 34 SMVDYSN----RNLTH-VPKDLP--PRTKALSLSQNSISEL-RMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYL 105 (562)
T ss_dssp CEEECTT----SCCCS-CCTTSC--TTCCEEECCSSCCCCC-CGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEE
T ss_pred cEEEcCC----CCCcc-CCCCCC--CCcCEEECCCCCcccc-ChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEE
Confidence 6677777 55553 565443 6777788887777754 55677777777777777777777667777777777777
Q ss_pred eccCccCCCCcchHHhhCCCCCCCEEEcCCCCCCCCc-cccccccccCCCCCCeEEccCCCCCCCchhHHHhhcCCC--c
Q 042537 130 DLSYINLNKSRDWLRIIDKLPSLRTLNLEHCHLPPII-PSDLLHLNFSTSSLGALYLFENSLSSSIYPWLFNISSKL--V 206 (789)
Q Consensus 130 ~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~-~~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L--~ 206 (789)
+|++|+++.+ |.. .+++|++|++++|.+.+.. | ..+.++ ++|++|++++|.+++..... + ++| +
T Consensus 106 ~Ls~N~l~~l---p~~--~l~~L~~L~Ls~N~l~~l~~p--~~~~~l--~~L~~L~L~~n~l~~~~~~~---l-~~L~L~ 172 (562)
T 3a79_B 106 DVSHNRLQNI---SCC--PMASLRHLDLSFNDFDVLPVC--KEFGNL--TKLTFLGLSAAKFRQLDLLP---V-AHLHLS 172 (562)
T ss_dssp ECTTSCCCEE---CSC--CCTTCSEEECCSSCCSBCCCC--GGGGGC--TTCCEEEEECSBCCTTTTGG---G-TTSCEE
T ss_pred ECCCCcCCcc---Ccc--ccccCCEEECCCCCccccCch--Hhhccc--CcccEEecCCCccccCchhh---h-hhceee
Confidence 7777777753 333 6777777777777765532 2 223333 45555555555544311111 1 122 4
Q ss_pred EEEccCCCC--cccCchhhhcCCCCcEEECCCCCccEEecCCCcCcccchhhhhCCCCCCEEEccCCCCCCccChhhhhc
Q 042537 207 VLDLDSNLL--QGSLLEPFDRMVSLRTLYLGFNELEELFLGKNRLNGTINQWLSRMYKLDALSLSGNSLTGVVTESVFSE 284 (789)
Q Consensus 207 ~L~Ls~n~i--~~~~~~~~~~l~~L~~L~L~~n~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~ 284 (789)
+|++++|.+ ++..|..|..+.. + .+ .+++++|.+.+.++...+..
T Consensus 173 ~L~L~~n~l~~~~~~~~~l~~l~~-~-------------------------------~l-~l~l~~n~~~~~~~~~~~~~ 219 (562)
T 3a79_B 173 CILLDLVSYHIKGGETESLQIPNT-T-------------------------------VL-HLVFHPNSLFSVQVNMSVNA 219 (562)
T ss_dssp EEEEEESSCCCCSSSCCEEEECCE-E-------------------------------EE-EEEECSSSCCCCCCEEEESS
T ss_pred EEEeecccccccccCcccccccCc-c-------------------------------eE-EEEecCccchhhhhhhcccc
Confidence 444444444 3333333333221 1 11 33444454444444434444
Q ss_pred CCCCcEEEccCCcccccccCCCCCcccceeEeccCccCCCCCchhccCCCCccEEEccCCcCCCCcchhHhh--hccCCC
Q 042537 285 LSNLKALHLDDNSFTLKFSHDWIPPFQLIIILLGSCQMGPHFPKWLQTQNQIEVLDISDAGISDTVPDWFWD--LSHTIA 362 (789)
Q Consensus 285 l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~n~i~~~~~~~~~~--~~~~L~ 362 (789)
+++|+.+++++|+..... + ......+..+++|+.++++++.+.+.....+.. ..++|+
T Consensus 220 l~~L~~L~l~~n~~~~~~-------------------l-~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~ 279 (562)
T 3a79_B 220 LGHLQLSNIKLNDENCQR-------------------L-MTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVE 279 (562)
T ss_dssp EEEEEEEEEECCSTTHHH-------------------H-HHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEE
T ss_pred cceEEEecccccccccch-------------------H-HHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhccccc
Confidence 555555555554311000 0 011223445555666665555544322111111 112566
Q ss_pred eeeeccccccccCCCCCCCCCCCCCEEEccCCcccccCCCCCCCCcEEEcCCCcCccccchhcccCCCCCCEEEcCCCcc
Q 042537 363 DFNLSNNHIKGKLPNLSLRFDPFSSSIDISSNYFEGLIPPLPSNASVLNLSRNKFSESISFLCSINGHKLEFLDLSNNIL 442 (789)
Q Consensus 363 ~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l 442 (789)
+|++++|.++|.+|...+... ..+++ .|+.++++.+.+
T Consensus 280 ~L~l~~n~l~~~ip~~~~~~~--------------------~~~L~----------------------~L~~~~~~~~~~ 317 (562)
T 3a79_B 280 YLNIYNLTITERIDREEFTYS--------------------ETALK----------------------SLMIEHVKNQVF 317 (562)
T ss_dssp EEEEEEEEECSCCCCCCCCCC--------------------SCSCC----------------------EEEEEEEEECCC
T ss_pred EEEEeccEeeccccchhhhcc--------------------cccch----------------------heehhhccccee
Confidence 666666666666655211100 01121 122222222222
Q ss_pred ccCCC-ccccc---CCCCcEEEcCCCcCcccCCccccccCcccEEEccCCeeeeeCCcCccCCCCCcEEeCCCCcccccC
Q 042537 443 SGRLP-DCWMQ---FDRLAVLSLANNFFSGKIPKSMGFLHSIQTLSLYNNSLIGELPSFFKSCSQLILMDLGKNGLSGEI 518 (789)
Q Consensus 443 ~~~~~-~~~~~---l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~ 518 (789)
.+| ..+.. ..+|+.|++++|.+.... ....+++|++|++++|++++..|..+.++++|++|++++|+++ .+
T Consensus 318 --~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~ 392 (562)
T 3a79_B 318 --LFSKEALYSVFAEMNIKMLSISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLK-NF 392 (562)
T ss_dssp --SSCHHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCC-BT
T ss_pred --ecChhhhhhhhccCcceEEEccCCCccccc--CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcC-Cc
Confidence 111 11111 133445555555443211 1134555666666666666555556666666666666666665 33
Q ss_pred c---hhhhhcCCCCcEEEcCCCcccccCCC-CccCCCcCceEeccCCcccccCCccccccccCcccCCCccccccCcccc
Q 042537 519 P---TWIGEGLPKLVVLSLKSNKFHGNIPF-QVCQLSYIQILDLSLNNISGIIPKCLNNFTGMAQKSSSNLAITSNYTFE 594 (789)
Q Consensus 519 p---~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~ 594 (789)
+ ..+ ..+++|++|++++|++++.+|. .+..+++|++|++++|++++..|..+.
T Consensus 393 ~~~~~~~-~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~---------------------- 449 (562)
T 3a79_B 393 FKVALMT-KNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP---------------------- 449 (562)
T ss_dssp THHHHTT-TTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC----------------------
T ss_pred ccchhhh-cCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc----------------------
Confidence 2 222 2566777777777777663333 466677788888888877655444332
Q ss_pred cccccccccccceeEEEeeccccccccccCceeEEEcccCccccccchhhhccccCcEEEccCCcceeecCcc-cccCCC
Q 042537 595 RQGIEFLESYVDNVVLTWKGSQHEYRSTLGLVKILDFSMNKLSGTIPEEIMDLVGLVALNLSRNNLTGQITPK-IDQLKS 673 (789)
Q Consensus 595 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~-~~~l~~ 673 (789)
+.|+.|++++|+++ .+|..+..+++|++|+|++|+++ .+|.. +..+++
T Consensus 450 -----------------------------~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~ 498 (562)
T 3a79_B 450 -----------------------------PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTS 498 (562)
T ss_dssp -----------------------------TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCTT
T ss_pred -----------------------------CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCCC
Confidence 23488999999988 67777779999999999999999 56665 899999
Q ss_pred CCEEeCCCCcccccCc
Q 042537 674 LDFLDLSQNQFVGGIP 689 (789)
Q Consensus 674 L~~L~Ls~N~l~~~~p 689 (789)
|+.|++++|++.+..|
T Consensus 499 L~~L~l~~N~~~c~c~ 514 (562)
T 3a79_B 499 LQYIWLHDNPWDCTCP 514 (562)
T ss_dssp CCCEECCSCCBCCCHH
T ss_pred CCEEEecCCCcCCCcc
Confidence 9999999999997665
No 25
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=4.2e-39 Score=356.02 Aligned_cols=391 Identities=20% Similarity=0.177 Sum_probs=258.1
Q ss_pred eEEccCCCCCCCchhHHHhhcCCCcEEEccCCCCcccCchhhhcCCCCcEEECCCCCccEEecCCCcCccc-chhhhhCC
Q 042537 182 ALYLFENSLSSSIYPWLFNISSKLVVLDLDSNLLQGSLLEPFDRMVSLRTLYLGFNELEELFLGKNRLNGT-INQWLSRM 260 (789)
Q Consensus 182 ~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~L~~L~L~~n~l~~~-~~~~l~~l 260 (789)
.++.+++.++ .+|. ..++|++|++++|.+++..|..|.++++|++|+++ +|.+.+. .+..|.++
T Consensus 14 ~~~c~~~~l~-~lp~----l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~----------~n~~~~~i~~~~~~~l 78 (455)
T 3v47_A 14 NAICINRGLH-QVPE----LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVE----------QQTPGLVIRNNTFRGL 78 (455)
T ss_dssp EEECCSSCCS-SCCC----CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECC----------CCSTTCEECTTTTTTC
T ss_pred ccCcCCCCcc-cCCC----CCCccCEEEecCCccCcCChhHhccCccccEEECc----------CCcccceECccccccc
Confidence 4555555544 3333 22356666666666666556666666666666665 3333322 23445556
Q ss_pred CCCCEEEccCCCCCCccChhhhhcCCCCcEEEccCCcccccccCCCCCcccceeEeccCccCCCCCchhccCCCCccEEE
Q 042537 261 YKLDALSLSGNSLTGVVTESVFSELSNLKALHLDDNSFTLKFSHDWIPPFQLIIILLGSCQMGPHFPKWLQTQNQIEVLD 340 (789)
Q Consensus 261 ~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 340 (789)
++|++|+|++|++++..|. .|.++++|++|++++|.+++..+. ...+..+++|++|+
T Consensus 79 ~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~----------------------~~~~~~l~~L~~L~ 135 (455)
T 3v47_A 79 SSLIILKLDYNQFLQLETG-AFNGLANLEVLTLTQCNLDGAVLS----------------------GNFFKPLTSLEMLV 135 (455)
T ss_dssp TTCCEEECTTCTTCEECTT-TTTTCTTCCEEECTTSCCBTHHHH----------------------SSTTTTCTTCCEEE
T ss_pred ccCCEEeCCCCccCccChh-hccCcccCCEEeCCCCCCCccccC----------------------cccccCcccCCEEE
Confidence 6666666666666533232 455556666666665555432111 11245556666666
Q ss_pred ccCCcCCCCcchhHhhhccCCCeeeeccccccccCCCCCCCCCCCCCEEEccCCcccccCCCCCCCCcEEEcCCCcCccc
Q 042537 341 ISDAGISDTVPDWFWDLSHTIADFNLSNNHIKGKLPNLSLRFDPFSSSIDISSNYFEGLIPPLPSNASVLNLSRNKFSES 420 (789)
Q Consensus 341 ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~i~~~ 420 (789)
+++|.+++..|..+....++|+.|++++|.++ +..+..+..+
T Consensus 136 L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~-------------------------~~~~~~l~~l------------- 177 (455)
T 3v47_A 136 LRDNNIKKIQPASFFLNMRRFHVLDLTFNKVK-------------------------SICEEDLLNF------------- 177 (455)
T ss_dssp CCSSBCCSCCCCGGGGGCTTCCEEECTTCCBS-------------------------CCCTTTSGGG-------------
T ss_pred CCCCccCccCcccccCCCCcccEEeCCCCccc-------------------------ccChhhhhcc-------------
Confidence 66666655544432222233333333333333 2222111000
Q ss_pred cchhcccCCCCCCEEEcCCCccccCCCcc--------cccCCCCcEEEcCCCcCcccCCcccccc---CcccEEEccCCe
Q 042537 421 ISFLCSINGHKLEFLDLSNNILSGRLPDC--------WMQFDRLAVLSLANNFFSGKIPKSMGFL---HSIQTLSLYNNS 489 (789)
Q Consensus 421 ~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~--------~~~l~~L~~L~L~~n~l~~~~~~~~~~l---~~L~~L~L~~n~ 489 (789)
....++.|++++|.+.+..+.. +..+++|+.|++++|++++..|..+... ++|+.|++++|.
T Consensus 178 -------~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~ 250 (455)
T 3v47_A 178 -------QGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSY 250 (455)
T ss_dssp -------TTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCT
T ss_pred -------ccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeecccc
Confidence 0156778888888887654433 2355778888888888877766666543 677888887776
Q ss_pred eeeeCCcCccCCCCCcEEeCCCCcccccCchhhh-hcCCCCcEEEcCCCcccccCCCCccCCCcCceEeccCCcccccCC
Q 042537 490 LIGELPSFFKSCSQLILMDLGKNGLSGEIPTWIG-EGLPKLVVLSLKSNKFHGNIPFQVCQLSYIQILDLSLNNISGIIP 568 (789)
Q Consensus 490 l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p 568 (789)
+.+... ..+.+.+..+..+. -..++|+.|++++|++.+..|..+..+++|++|++++|++++..|
T Consensus 251 ~~~~~~--------------~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 316 (455)
T 3v47_A 251 NMGSSF--------------GHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDD 316 (455)
T ss_dssp TTSCCT--------------TCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECT
T ss_pred cccccc--------------chhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccCh
Confidence 543211 11122211111111 024789999999999999999999999999999999999998888
Q ss_pred ccccccccCcccCCCccccccCcccccccccccccccceeEEEeeccccccccccCceeEEEcccCccccccchhhhccc
Q 042537 569 KCLNNFTGMAQKSSSNLAITSNYTFERQGIEFLESYVDNVVLTWKGSQHEYRSTLGLVKILDFSMNKLSGTIPEEIMDLV 648 (789)
Q Consensus 569 ~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~ 648 (789)
..|..+++| +.|++++|++++..|..|..++
T Consensus 317 ~~~~~l~~L-------------------------------------------------~~L~Ls~N~l~~~~~~~~~~l~ 347 (455)
T 3v47_A 317 NAFWGLTHL-------------------------------------------------LKLNLSQNFLGSIDSRMFENLD 347 (455)
T ss_dssp TTTTTCTTC-------------------------------------------------CEEECCSSCCCEECGGGGTTCT
T ss_pred hHhcCcccC-------------------------------------------------CEEECCCCccCCcChhHhcCcc
Confidence 888776666 8999999999988899999999
Q ss_pred cCcEEEccCCcceeecCcccccCCCCCEEeCCCCcccccCchhhhcCCCCCeEeccCCcccccCCCCCcc
Q 042537 649 GLVALNLSRNNLTGQITPKIDQLKSLDFLDLSQNQFVGGIPSSLCQLSRLSVMNLSYNNLSGKIPLGTQL 718 (789)
Q Consensus 649 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~ 718 (789)
+|++|+|++|++++..|..|..+++|++|+|++|++++..+..|..+++|++|++++|+++|.+|...++
T Consensus 348 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~l 417 (455)
T 3v47_A 348 KLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYL 417 (455)
T ss_dssp TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTHHH
T ss_pred cCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCcchHH
Confidence 9999999999999988999999999999999999999888888899999999999999999999975444
No 26
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=4e-39 Score=352.48 Aligned_cols=430 Identities=22% Similarity=0.260 Sum_probs=170.6
Q ss_pred cccCCCCCCEEeCCCCCCCCCCCcccccCCCCCCEEecCCCcCCCCCCccccCCCCCcEEeccCccCCCCcchHHhhCCC
Q 042537 70 SLLKLYHLRHLDLSENDFSGSRIPEFIGSLNKLRYLSLSSAEFEGPIPSQLGNLSRLKYLDLSYINLNKSRDWLRIIDKL 149 (789)
Q Consensus 70 ~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l 149 (789)
.-.+.++|++|++++|.+. .+|..++++++|++|++++|.+.+.+|.+++++++|++++++.|..
T Consensus 6 ~~~~~~~L~~L~l~~n~l~--~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~------------- 70 (454)
T 1jl5_A 6 RNVSNTFLQEPLRHSSNLT--EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLD------------- 70 (454)
T ss_dssp ------------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHH-------------
T ss_pred cccccccchhhhcccCchh--hCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhc-------------
Confidence 3345688999999999994 4888899999999999999999888999999988876655554421
Q ss_pred CCCCEEEcCCCCCCCCccccccccccCCCCCCeEEccCCCCCCCchhHHHhhcCCCcEEEccCCCCcccCchhhhcCCCC
Q 042537 150 PSLRTLNLEHCHLPPIIPSDLLHLNFSTSSLGALYLFENSLSSSIYPWLFNISSKLVVLDLDSNLLQGSLLEPFDRMVSL 229 (789)
Q Consensus 150 ~~L~~L~L~~n~l~~~~~~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L 229 (789)
.++++|++++|.+++... . . ++|++|++++|.+++ +|.. .++|++|++++|++++.. .. .++|
T Consensus 71 ~~l~~L~l~~~~l~~lp~--~----~--~~L~~L~l~~n~l~~-lp~~----~~~L~~L~l~~n~l~~l~-~~---~~~L 133 (454)
T 1jl5_A 71 RQAHELELNNLGLSSLPE--L----P--PHLESLVASCNSLTE-LPEL----PQSLKSLLVDNNNLKALS-DL---PPLL 133 (454)
T ss_dssp HTCSEEECTTSCCSCCCS--C----C--TTCSEEECCSSCCSS-CCCC----CTTCCEEECCSSCCSCCC-SC---CTTC
T ss_pred cCCCEEEecCCccccCCC--C----c--CCCCEEEccCCcCCc-cccc----cCCCcEEECCCCccCccc-CC---CCCC
Confidence 345666666666554322 0 0 455555555555543 3321 135555555555555321 10 1344
Q ss_pred cEEECCCCCccEEecCCCcCcccchhhhhCCCCCCEEEccCCCCCCccChhhhhcCCCCcEEEccCCcccccccCCCCCc
Q 042537 230 RTLYLGFNELEELFLGKNRLNGTINQWLSRMYKLDALSLSGNSLTGVVTESVFSELSNLKALHLDDNSFTLKFSHDWIPP 309 (789)
Q Consensus 230 ~~L~L~~n~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~ 309 (789)
++|+++ +|.+++ +| .|+++++|++|++++|++++ +|.. .++|++|++++|++++
T Consensus 134 ~~L~L~----------~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~----~~~L~~L~L~~n~l~~--------- 187 (454)
T 1jl5_A 134 EYLGVS----------NNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDL----PPSLEFIAAGNNQLEE--------- 187 (454)
T ss_dssp CEEECC----------SSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCC----CTTCCEEECCSSCCSS---------
T ss_pred CEEECc----------CCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCC----cccccEEECcCCcCCc---------
Confidence 444444 333333 22 25555555555555555542 3321 1345555555554442
Q ss_pred ccceeEeccCccCCCCCchhccCCCCccEEEccCCcCCCCcchhHhhhccCCCeeeeccccccccCCCCCCCCCCCCCEE
Q 042537 310 FQLIIILLGSCQMGPHFPKWLQTQNQIEVLDISDAGISDTVPDWFWDLSHTIADFNLSNNHIKGKLPNLSLRFDPFSSSI 389 (789)
Q Consensus 310 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L 389 (789)
+| .+..+++|++|++++|.+++. |.. .++|+.|++++|.++ .+|. +..++.|++|
T Consensus 188 ----------------l~-~~~~l~~L~~L~l~~N~l~~l-~~~----~~~L~~L~l~~n~l~-~lp~--~~~l~~L~~L 242 (454)
T 1jl5_A 188 ----------------LP-ELQNLPFLTAIYADNNSLKKL-PDL----PLSLESIVAGNNILE-ELPE--LQNLPFLTTI 242 (454)
T ss_dssp ----------------CC-CCTTCTTCCEEECCSSCCSSC-CCC----CTTCCEEECCSSCCS-SCCC--CTTCTTCCEE
T ss_pred ----------------Cc-cccCCCCCCEEECCCCcCCcC-CCC----cCcccEEECcCCcCC-cccc--cCCCCCCCEE
Confidence 22 244555555555555555542 211 135666666666665 4553 5566666777
Q ss_pred EccCCcccccCCCCCCCCcEEEcCCCcCccccchhcccCCCCCCEEEcCCCccccCCCcccccCCCCcEEEcCCCcCccc
Q 042537 390 DISSNYFEGLIPPLPSNASVLNLSRNKFSESISFLCSINGHKLEFLDLSNNILSGRLPDCWMQFDRLAVLSLANNFFSGK 469 (789)
Q Consensus 390 ~l~~n~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 469 (789)
++++|.+++. |..+++|+.|++++|++.+.+.. .++|++|++++|++++. +.. .++|+.|++++|++++.
T Consensus 243 ~l~~N~l~~l-~~~~~~L~~L~l~~N~l~~l~~~-----~~~L~~L~ls~N~l~~l-~~~---~~~L~~L~l~~N~l~~i 312 (454)
T 1jl5_A 243 YADNNLLKTL-PDLPPSLEALNVRDNYLTDLPEL-----PQSLTFLDVSENIFSGL-SEL---PPNLYYLNASSNEIRSL 312 (454)
T ss_dssp ECCSSCCSSC-CSCCTTCCEEECCSSCCSCCCCC-----CTTCCEEECCSSCCSEE-SCC---CTTCCEEECCSSCCSEE
T ss_pred ECCCCcCCcc-cccccccCEEECCCCcccccCcc-----cCcCCEEECcCCccCcc-cCc---CCcCCEEECcCCcCCcc
Confidence 7777666652 33344555555555555442211 03455555555555431 100 13445555555544431
Q ss_pred CCccccccCcccEEEccCCeeeeeCCcCccCCCCCcEEeCCCCcccccCchhhhhcCCCCcEEEcCCCcccc--cCCCCc
Q 042537 470 IPKSMGFLHSIQTLSLYNNSLIGELPSFFKSCSQLILMDLGKNGLSGEIPTWIGEGLPKLVVLSLKSNKFHG--NIPFQV 547 (789)
Q Consensus 470 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~--~~~~~~ 547 (789)
+. ..++|++|++++|++++ +|.. +++|++|++++|+++ .+|. .+++|++|++++|++++ .+|.++
T Consensus 313 -~~---~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~-~lp~----~l~~L~~L~L~~N~l~~l~~ip~~l 379 (454)
T 1jl5_A 313 -CD---LPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLA-EVPE----LPQNLKQLHVEYNPLREFPDIPESV 379 (454)
T ss_dssp -CC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-CCCC----CCTTCCEEECCSSCCSSCCCCCTTC
T ss_pred -cC---CcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCccc-cccc----hhhhccEEECCCCCCCcCCCChHHH
Confidence 11 01244444444444443 2221 244444444444444 3443 13444444444444443 223222
Q ss_pred cCCCcCceEeccCCcccccCCccccccccCcccCCCccccccCcccccccccccccccceeEEEeeccccccccccCcee
Q 042537 548 CQLSYIQILDLSLNNISGIIPKCLNNFTGMAQKSSSNLAITSNYTFERQGIEFLESYVDNVVLTWKGSQHEYRSTLGLVK 627 (789)
Q Consensus 548 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~ 627 (789)
.. ++.|.+.+.+|. .+++|+
T Consensus 380 ~~--------L~~n~~~~~i~~----------------------------------------------------~~~~L~ 399 (454)
T 1jl5_A 380 ED--------LRMNSHLAEVPE----------------------------------------------------LPQNLK 399 (454)
T ss_dssp CE--------EECCC-----------------------------------------------------------------
T ss_pred Hh--------hhhccccccccc----------------------------------------------------ccCcCC
Confidence 21 112222222221 134568
Q ss_pred EEEcccCcccc--ccchhhhccccCcEEEccCCcceeecCcccccC
Q 042537 628 ILDFSMNKLSG--TIPEEIMDLVGLVALNLSRNNLTGQITPKIDQL 671 (789)
Q Consensus 628 ~L~Ls~N~l~~--~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l 671 (789)
.||+++|++++ .+|. .++.|.+.+|.+.+.++.+....
T Consensus 400 ~L~ls~N~l~~~~~iP~------sl~~L~~~~~~~~~~~~~~~~~~ 439 (454)
T 1jl5_A 400 QLHVETNPLREFPDIPE------SVEDLRMNSERVVDPYEFAHETT 439 (454)
T ss_dssp ----------------------------------------------
T ss_pred EEECCCCcCCccccchh------hHhheeCcCcccCCccccCHHHh
Confidence 99999999986 5664 46677888898887766555443
No 27
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=4.1e-39 Score=352.39 Aligned_cols=322 Identities=25% Similarity=0.309 Sum_probs=162.8
Q ss_pred CCCCCCEEecCCCcCCCCCCccccCCCCCcEEeccCccCCCCcchHHhhCCCCCCCEEEcCCCCCCCCccccccccccCC
Q 042537 98 SLNKLRYLSLSSAEFEGPIPSQLGNLSRLKYLDLSYINLNKSRDWLRIIDKLPSLRTLNLEHCHLPPIIPSDLLHLNFST 177 (789)
Q Consensus 98 ~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~ 177 (789)
..++|++|++++|.+ +.+|.+|+++++|++|++++|++.+. +|..++++++|+.+++.+|..
T Consensus 9 ~~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~--~p~~~~~l~~L~~l~l~~c~~--------------- 70 (454)
T 1jl5_A 9 SNTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERN--APPGNGEQREMAVSRLRDCLD--------------- 70 (454)
T ss_dssp --------------------------CCHHHHHHHHHHHHHT--SCTTSCCCHHHHHHHHHHHHH---------------
T ss_pred ccccchhhhcccCch-hhCChhHhcccchhhhhccCCccccc--CCcccccchhcchhhhhhhhc---------------
Confidence 358899999999999 68999999999999999999988763 678888888888887776631
Q ss_pred CCCCeEEccCCCCCCCchhHHHhhcCCCcEEEccCCCCcccCchhhhcCCCCcEEECCCCCccEEecCCCcCcccchhhh
Q 042537 178 SSLGALYLFENSLSSSIYPWLFNISSKLVVLDLDSNLLQGSLLEPFDRMVSLRTLYLGFNELEELFLGKNRLNGTINQWL 257 (789)
Q Consensus 178 ~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~L~~L~L~~n~l~~~~~~~l 257 (789)
.++++|++++|.+++ +|. ..++|++|++++|.+++ +|.. +++|+.|++++|+++.+ +..
T Consensus 71 ~~l~~L~l~~~~l~~-lp~----~~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~l-----------~~~- 129 (454)
T 1jl5_A 71 RQAHELELNNLGLSS-LPE----LPPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKAL-----------SDL- 129 (454)
T ss_dssp HTCSEEECTTSCCSC-CCS----CCTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSCC-----------CSC-
T ss_pred cCCCEEEecCCcccc-CCC----CcCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCcc-----------cCC-
Confidence 567778888777764 332 12467777777777775 3332 35566666664433321 100
Q ss_pred hCCCCCCEEEccCCCCCCccChhhhhcCCCCcEEEccCCcccccccCCCCCcccceeEeccCccCCCCCchhccCCCCcc
Q 042537 258 SRMYKLDALSLSGNSLTGVVTESVFSELSNLKALHLDDNSFTLKFSHDWIPPFQLIIILLGSCQMGPHFPKWLQTQNQIE 337 (789)
Q Consensus 258 ~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~ 337 (789)
.++|++|++++|++++ +|. |.++++|++|++++|++++ +|.. ..+|+
T Consensus 130 --~~~L~~L~L~~n~l~~-lp~--~~~l~~L~~L~l~~N~l~~-------------------------lp~~---~~~L~ 176 (454)
T 1jl5_A 130 --PPLLEYLGVSNNQLEK-LPE--LQNSSFLKIIDVDNNSLKK-------------------------LPDL---PPSLE 176 (454)
T ss_dssp --CTTCCEEECCSSCCSS-CCC--CTTCTTCCEEECCSSCCSC-------------------------CCCC---CTTCC
T ss_pred --CCCCCEEECcCCCCCC-Ccc--cCCCCCCCEEECCCCcCcc-------------------------cCCC---ccccc
Confidence 1466666666666663 552 5666666666666665542 1211 12444
Q ss_pred EEEccCCcCCCCcchhHhhhccCCCeeeeccccccccCCCCCCCCCCCCCEEEccCCcccccCCCCCCCCcEEEcCCCcC
Q 042537 338 VLDISDAGISDTVPDWFWDLSHTIADFNLSNNHIKGKLPNLSLRFDPFSSSIDISSNYFEGLIPPLPSNASVLNLSRNKF 417 (789)
Q Consensus 338 ~L~ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~i 417 (789)
+|++++|. +++ +| .+..++.|+.|++++|.+++. |..++
T Consensus 177 ~L~L~~n~-------------------------l~~-l~--~~~~l~~L~~L~l~~N~l~~l-~~~~~------------ 215 (454)
T 1jl5_A 177 FIAAGNNQ-------------------------LEE-LP--ELQNLPFLTAIYADNNSLKKL-PDLPL------------ 215 (454)
T ss_dssp EEECCSSC-------------------------CSS-CC--CCTTCTTCCEEECCSSCCSSC-CCCCT------------
T ss_pred EEECcCCc-------------------------CCc-Cc--cccCCCCCCEEECCCCcCCcC-CCCcC------------
Confidence 44444444 442 33 244555566666666665542 22223
Q ss_pred ccccchhcccCCCCCCEEEcCCCccccCCCcccccCCCCcEEEcCCCcCcccCCccccccCcccEEEccCCeeeeeCCcC
Q 042537 418 SESISFLCSINGHKLEFLDLSNNILSGRLPDCWMQFDRLAVLSLANNFFSGKIPKSMGFLHSIQTLSLYNNSLIGELPSF 497 (789)
Q Consensus 418 ~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 497 (789)
+|++|++++|.++ .+| .+..+++|++|++++|++++ +|.. +++|++|++++|++++ +|..
T Consensus 216 -------------~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~N~l~~-l~~~ 275 (454)
T 1jl5_A 216 -------------SLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKT-LPDL---PPSLEALNVRDNYLTD-LPEL 275 (454)
T ss_dssp -------------TCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSS-CCSC---CTTCCEEECCSSCCSC-CCCC
T ss_pred -------------cccEEECcCCcCC-ccc-ccCCCCCCCEEECCCCcCCc-cccc---ccccCEEECCCCcccc-cCcc
Confidence 4555555555554 333 25555555555555555553 2321 2455555555555553 2322
Q ss_pred ccCCCCCcEEeCCCCcccccCchhhhhcCCCCcEEEcCCCcccccCCCCccCC-CcCceEeccCCcccc
Q 042537 498 FKSCSQLILMDLGKNGLSGEIPTWIGEGLPKLVVLSLKSNKFHGNIPFQVCQL-SYIQILDLSLNNISG 565 (789)
Q Consensus 498 ~~~l~~L~~L~ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~Ls~N~l~~ 565 (789)
.++|++|++++|++++ +|. ..++|+.|++++|++++. + .+ ++|++|++++|++++
T Consensus 276 ---~~~L~~L~ls~N~l~~-l~~----~~~~L~~L~l~~N~l~~i-~----~~~~~L~~L~Ls~N~l~~ 331 (454)
T 1jl5_A 276 ---PQSLTFLDVSENIFSG-LSE----LPPNLYYLNASSNEIRSL-C----DLPPSLEELNVSNNKLIE 331 (454)
T ss_dssp ---CTTCCEEECCSSCCSE-ESC----CCTTCCEEECCSSCCSEE-C----CCCTTCCEEECCSSCCSC
T ss_pred ---cCcCCEEECcCCccCc-ccC----cCCcCCEEECcCCcCCcc-c----CCcCcCCEEECCCCcccc
Confidence 2455566666665552 221 124556666666655532 1 12 356666666666553
No 28
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=2.5e-39 Score=337.24 Aligned_cols=291 Identities=27% Similarity=0.414 Sum_probs=240.9
Q ss_pred CHHHHHHHHHHhhcCcCCCCCCCCCCCCCCCCCCCc--eeeeEecCCC--CcEEEEEcCCCCCCCCccc--ccCccccCC
Q 042537 1 MEEEREALLEFKQSLVDEYGILSSWGREDDKRDCCY--WRGVRCSNTT--GHVIVLDLQVLVHSEPLKG--TISPSLLKL 74 (789)
Q Consensus 1 ~~~~~~~ll~~~~~~~~~~~~~~~w~~~~~~~~~c~--w~gv~c~~~~--~~v~~l~L~~~~~~~~l~~--~l~~~~~~l 74 (789)
.++|++||++||+++.||. .+++|. .+++||. |.||+|+... ++|++|+|++ +.+.| .+|+.|.++
T Consensus 4 ~~~~~~aL~~~k~~~~~~~-~l~~W~---~~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~----~~l~~~~~~~~~l~~l 75 (313)
T 1ogq_A 4 NPQDKQALLQIKKDLGNPT-TLSSWL---PTTDCCNRTWLGVLCDTDTQTYRVNNLDLSG----LNLPKPYPIPSSLANL 75 (313)
T ss_dssp CHHHHHHHHHHHHHTTCCG-GGTTCC---TTSCTTTTCSTTEEECCSSSCCCEEEEEEEC----CCCSSCEECCGGGGGC
T ss_pred CHHHHHHHHHHHHhcCCcc-cccCCC---CCCCCCcCCCcceEeCCCCCCceEEEEECCC----CCccCCcccChhHhCC
Confidence 3789999999999998887 799998 4678999 9999997544 8999999999 88888 899999999
Q ss_pred CCCCEEeCCC-CCCCCCCCcccccCCCCCCEEecCCCcCCCCCCccccCCCCCcEEeccCccCCCCcchHHhhCCCCCCC
Q 042537 75 YHLRHLDLSE-NDFSGSRIPEFIGSLNKLRYLSLSSAEFEGPIPSQLGNLSRLKYLDLSYINLNKSRDWLRIIDKLPSLR 153 (789)
Q Consensus 75 ~~L~~L~Ls~-n~i~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~ 153 (789)
++|++|++++ |.+.+. +|..|+++++|++|++++|.+++.+|..|.++++|++|++++|.+++. +|..+.++++|+
T Consensus 76 ~~L~~L~L~~~n~l~~~-~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~--~p~~~~~l~~L~ 152 (313)
T 1ogq_A 76 PYLNFLYIGGINNLVGP-IPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGT--LPPSISSLPNLV 152 (313)
T ss_dssp TTCSEEEEEEETTEESC-CCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESC--CCGGGGGCTTCC
T ss_pred CCCCeeeCCCCCccccc-CChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCc--CChHHhcCCCCC
Confidence 9999999995 998876 899999999999999999999989999999999999999999999964 678899999999
Q ss_pred EEEcCCCCCCCCccccccccccCCC-CCCeEEccCCCCCCCchhHHHhhcCCCcEEEccCCCCcccCchhhhcCCCCcEE
Q 042537 154 TLNLEHCHLPPIIPSDLLHLNFSTS-SLGALYLFENSLSSSIYPWLFNISSKLVVLDLDSNLLQGSLLEPFDRMVSLRTL 232 (789)
Q Consensus 154 ~L~L~~n~l~~~~~~~~~~~~l~~~-~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 232 (789)
+|++++|.+++.+|. .+..+ + +|++|++++|.+++.+|..+.... |++|++++|.+++..|..|..+++|+.|
T Consensus 153 ~L~L~~N~l~~~~p~--~l~~l--~~~L~~L~L~~N~l~~~~~~~~~~l~--L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 226 (313)
T 1ogq_A 153 GITFDGNRISGAIPD--SYGSF--SKLFTSMTISRNRLTGKIPPTFANLN--LAFVDLSRNMLEGDASVLFGSDKNTQKI 226 (313)
T ss_dssp EEECCSSCCEEECCG--GGGCC--CTTCCEEECCSSEEEEECCGGGGGCC--CSEEECCSSEEEECCGGGCCTTSCCSEE
T ss_pred eEECcCCcccCcCCH--HHhhh--hhcCcEEECcCCeeeccCChHHhCCc--ccEEECcCCcccCcCCHHHhcCCCCCEE
Confidence 999999999877773 33443 5 888888888888877777766553 8888888888888888888888888888
Q ss_pred ECCCCCccEEecCCCcCcccchhhhhCCCCCCEEEccCCCCCCccChhhhhcCCCCcEEEccCCcccccccCCCCCcccc
Q 042537 233 YLGFNELEELFLGKNRLNGTINQWLSRMYKLDALSLSGNSLTGVVTESVFSELSNLKALHLDDNSFTLKFSHDWIPPFQL 312 (789)
Q Consensus 233 ~L~~n~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L 312 (789)
+++ +|.+++.+|. +..+++|++|++++|++++.+|. .|..+++|++|++++|++++..+.. ..+++|
T Consensus 227 ~L~----------~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~-~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L 293 (313)
T 1ogq_A 227 HLA----------KNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQ-GLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRF 293 (313)
T ss_dssp ECC----------SSEECCBGGG-CCCCTTCCEEECCSSCCEECCCG-GGGGCTTCCEEECCSSEEEEECCCS-TTGGGS
T ss_pred ECC----------CCceeeecCc-ccccCCCCEEECcCCcccCcCCh-HHhcCcCCCEEECcCCcccccCCCC-cccccc
Confidence 888 4445555554 67788888888888888877766 5788888888888888887665543 445555
Q ss_pred eeEeccCcc
Q 042537 313 IIILLGSCQ 321 (789)
Q Consensus 313 ~~L~l~~~~ 321 (789)
+.+++.+|.
T Consensus 294 ~~l~l~~N~ 302 (313)
T 1ogq_A 294 DVSAYANNK 302 (313)
T ss_dssp CGGGTCSSS
T ss_pred ChHHhcCCC
Confidence 555555554
No 29
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=1.5e-37 Score=343.65 Aligned_cols=386 Identities=22% Similarity=0.245 Sum_probs=290.5
Q ss_pred CEEecCCCcCCCCCCccccCCCCCcEEeccCccCCCCcchHHhhCCCCCCCEEEcCCCCCCCCccccccccccCCCCCCe
Q 042537 103 RYLSLSSAEFEGPIPSQLGNLSRLKYLDLSYINLNKSRDWLRIIDKLPSLRTLNLEHCHLPPIIPSDLLHLNFSTSSLGA 182 (789)
Q Consensus 103 ~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~~~L~~ 182 (789)
+.++.++++++ .+|. +. ++|++|+|++|.++++ .|..++++++|++|++++|.+.+.++
T Consensus 13 ~~~~c~~~~l~-~lp~-l~--~~l~~L~Ls~n~i~~~--~~~~~~~l~~L~~L~L~~n~~~~~i~--------------- 71 (455)
T 3v47_A 13 YNAICINRGLH-QVPE-LP--AHVNYVDLSLNSIAEL--NETSFSRLQDLQFLKVEQQTPGLVIR--------------- 71 (455)
T ss_dssp TEEECCSSCCS-SCCC-CC--TTCCEEECCSSCCCEE--CTTTTSSCTTCCEEECCCCSTTCEEC---------------
T ss_pred cccCcCCCCcc-cCCC-CC--CccCEEEecCCccCcC--ChhHhccCccccEEECcCCcccceEC---------------
Confidence 45677777776 4554 32 6788888888887764 35677777777777777776654332
Q ss_pred EEccCCCCCCCchhHHHhhcCCCcEEEccCCCCcccCchhhhcCCCCcEEECCCCCccEEecCCCcCcccchhh--hhCC
Q 042537 183 LYLFENSLSSSIYPWLFNISSKLVVLDLDSNLLQGSLLEPFDRMVSLRTLYLGFNELEELFLGKNRLNGTINQW--LSRM 260 (789)
Q Consensus 183 L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~L~~L~L~~n~l~~~~~~~--l~~l 260 (789)
+..+...++|++|++++|.+++..|..|.++++|++|+++ +|.+++..+.. |+.+
T Consensus 72 -------------~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~----------~n~l~~~~~~~~~~~~l 128 (455)
T 3v47_A 72 -------------NNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLT----------QCNLDGAVLSGNFFKPL 128 (455)
T ss_dssp -------------TTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECT----------TSCCBTHHHHSSTTTTC
T ss_pred -------------cccccccccCCEEeCCCCccCccChhhccCcccCCEEeCC----------CCCCCccccCcccccCc
Confidence 2222222478888888888887778888888888888888 55565544444 7888
Q ss_pred CCCCEEEccCCCCCCccChhhhhcCCCCcEEEccCCcccccccCCCCCc--ccceeEeccCccCCCCCchh--------c
Q 042537 261 YKLDALSLSGNSLTGVVTESVFSELSNLKALHLDDNSFTLKFSHDWIPP--FQLIIILLGSCQMGPHFPKW--------L 330 (789)
Q Consensus 261 ~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~--------l 330 (789)
++|++|++++|.+.+..|...+.++++|++|++++|++.+..+..+..+ .+++.+++++|.+....+.+ +
T Consensus 129 ~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~ 208 (455)
T 3v47_A 129 TSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNP 208 (455)
T ss_dssp TTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCT
T ss_pred ccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccc
Confidence 8888888888888866666558888888888888888887777776655 67888888888887655443 3
Q ss_pred cCCCCccEEEccCCcCCCCcchhHhhhc--cCCCeeeeccccccccCCCCCCCCCCCCCEEEccCCcccccCCCCCCCCc
Q 042537 331 QTQNQIEVLDISDAGISDTVPDWFWDLS--HTIADFNLSNNHIKGKLPNLSLRFDPFSSSIDISSNYFEGLIPPLPSNAS 408 (789)
Q Consensus 331 ~~l~~L~~L~ls~n~i~~~~~~~~~~~~--~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~ 408 (789)
..+++|++|++++|.+++..|..+.... .+++.|++++|...+... ..+.+....+
T Consensus 209 ~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~---------------~~~~~~~~~~------- 266 (455)
T 3v47_A 209 FKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSF---------------GHTNFKDPDN------- 266 (455)
T ss_dssp TTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCT---------------TCCSSCCCCT-------
T ss_pred cccceeeeEecCCCcccccchhhhhccccccceeeEeecccccccccc---------------chhhhccCcc-------
Confidence 3568899999999999988887776542 466666666665543211 0011110000
Q ss_pred EEEcCCCcCccccchhcccCCCCCCEEEcCCCccccCCCcccccCCCCcEEEcCCCcCcccCCccccccCcccEEEccCC
Q 042537 409 VLNLSRNKFSESISFLCSINGHKLEFLDLSNNILSGRLPDCWMQFDRLAVLSLANNFFSGKIPKSMGFLHSIQTLSLYNN 488 (789)
Q Consensus 409 ~L~l~~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 488 (789)
..+ .....++|+.|++++|.+++..|..|..+++|++|++++|++++..|..|..+++|++|++++|
T Consensus 267 ------~~~-------~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 333 (455)
T 3v47_A 267 ------FTF-------KGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQN 333 (455)
T ss_dssp ------TTT-------GGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred ------ccc-------ccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCC
Confidence 000 0011168999999999999888999999999999999999999888889999999999999999
Q ss_pred eeeeeCCcCccCCCCCcEEeCCCCcccccCchhhhhcCCCCcEEEcCCCcccccCCCCccCCCcCceEeccCCcccccCC
Q 042537 489 SLIGELPSFFKSCSQLILMDLGKNGLSGEIPTWIGEGLPKLVVLSLKSNKFHGNIPFQVCQLSYIQILDLSLNNISGIIP 568 (789)
Q Consensus 489 ~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p 568 (789)
.+++..+..|..+++|++|++++|++++..|..+. .+++|++|++++|++++..+..+..+++|++|++++|++++..|
T Consensus 334 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 334 FLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFL-GLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp CCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTT-TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred ccCCcChhHhcCcccCCEEECCCCcccccChhhcc-ccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 99988888999999999999999999866666665 79999999999999998777778899999999999999997766
No 30
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=1.6e-35 Score=324.10 Aligned_cols=375 Identities=20% Similarity=0.174 Sum_probs=268.0
Q ss_pred CccccCCCCCCEEeCCCCCCCCCCCcccccCCCCCCEEecCCCcCCCCCCccccCCCCCcEEeccCccCCCCcchHHhhC
Q 042537 68 SPSLLKLYHLRHLDLSENDFSGSRIPEFIGSLNKLRYLSLSSAEFEGPIPSQLGNLSRLKYLDLSYINLNKSRDWLRIID 147 (789)
Q Consensus 68 ~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~ 147 (789)
+..++++++|++|++++|.+++ +| .++.+++|++|++++|.+++. | ++++++|++|++++|+++++ + ++
T Consensus 35 ~~~~~~l~~L~~L~Ls~n~l~~--~~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~---~--~~ 103 (457)
T 3bz5_A 35 TISEEQLATLTSLDCHNSSITD--MT-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL---D--VT 103 (457)
T ss_dssp EEEHHHHTTCCEEECCSSCCCC--CT-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC---C--CT
T ss_pred ccChhHcCCCCEEEccCCCccc--Ch-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee---e--cC
Confidence 3456777778888888877774 34 567777888888888877753 3 77777888888888777774 2 67
Q ss_pred CCCCCCEEEcCCCCCCCCccccccccccCCCCCCeEEccCCCCCCCchhHHHhhcCCCcEEEccCCCCcccCchhhhcCC
Q 042537 148 KLPSLRTLNLEHCHLPPIIPSDLLHLNFSTSSLGALYLFENSLSSSIYPWLFNISSKLVVLDLDSNLLQGSLLEPFDRMV 227 (789)
Q Consensus 148 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~ 227 (789)
++++|++|++++|.+++. + +..+ ++|++|++++|.+++. + +.. .++|++|++++|...+.+ .+..++
T Consensus 104 ~l~~L~~L~L~~N~l~~l-~----~~~l--~~L~~L~l~~N~l~~l-~--l~~-l~~L~~L~l~~n~~~~~~--~~~~l~ 170 (457)
T 3bz5_A 104 PLTKLTYLNCDTNKLTKL-D----VSQN--PLLTYLNCARNTLTEI-D--VSH-NTQLTELDCHLNKKITKL--DVTPQT 170 (457)
T ss_dssp TCTTCCEEECCSSCCSCC-C----CTTC--TTCCEEECTTSCCSCC-C--CTT-CTTCCEEECTTCSCCCCC--CCTTCT
T ss_pred CCCcCCEEECCCCcCCee-c----CCCC--CcCCEEECCCCcccee-c--ccc-CCcCCEEECCCCCccccc--ccccCC
Confidence 777788888888777663 2 3344 7777777777777652 2 223 337777777777444333 466777
Q ss_pred CCcEEECCCCCccEEecCCCcCcccchhhhhCCCCCCEEEccCCCCCCccChhhhhcCCCCcEEEccCCcccccccCCCC
Q 042537 228 SLRTLYLGFNELEELFLGKNRLNGTINQWLSRMYKLDALSLSGNSLTGVVTESVFSELSNLKALHLDDNSFTLKFSHDWI 307 (789)
Q Consensus 228 ~L~~L~L~~n~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~ 307 (789)
+|+.|++++|+++.+ | ++.+++|++|++++|.+++. + +..+++|++|++++|++++. + +.
T Consensus 171 ~L~~L~ls~n~l~~l-----------~--l~~l~~L~~L~l~~N~l~~~-~---l~~l~~L~~L~Ls~N~l~~i-p--~~ 230 (457)
T 3bz5_A 171 QLTTLDCSFNKITEL-----------D--VSQNKLLNRLNCDTNNITKL-D---LNQNIQLTFLDCSSNKLTEI-D--VT 230 (457)
T ss_dssp TCCEEECCSSCCCCC-----------C--CTTCTTCCEEECCSSCCSCC-C---CTTCTTCSEEECCSSCCSCC-C--CT
T ss_pred cCCEEECCCCcccee-----------c--cccCCCCCEEECcCCcCCee-c---cccCCCCCEEECcCCccccc-C--cc
Confidence 777777774444332 2 55677788888888877743 2 66777788888888877763 2 56
Q ss_pred CcccceeEeccCccCCCCCchhccCCCCccEEEccCCcCCCCcchhHhhhccCCCeeeeccccccccCCCCCCCCCCCCC
Q 042537 308 PPFQLIIILLGSCQMGPHFPKWLQTQNQIEVLDISDAGISDTVPDWFWDLSHTIADFNLSNNHIKGKLPNLSLRFDPFSS 387 (789)
Q Consensus 308 ~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~ 387 (789)
.+++|+.|++++|.+.+.. +..+++|+.|++++| +|+.|++++|.+.+.+| +..++.|+
T Consensus 231 ~l~~L~~L~l~~N~l~~~~---~~~l~~L~~L~l~~n---------------~L~~L~l~~n~~~~~~~---~~~l~~L~ 289 (457)
T 3bz5_A 231 PLTQLTYFDCSVNPLTELD---VSTLSKLTTLHCIQT---------------DLLEIDLTHNTQLIYFQ---AEGCRKIK 289 (457)
T ss_dssp TCTTCSEEECCSSCCSCCC---CTTCTTCCEEECTTC---------------CCSCCCCTTCTTCCEEE---CTTCTTCC
T ss_pred ccCCCCEEEeeCCcCCCcC---HHHCCCCCEEeccCC---------------CCCEEECCCCccCCccc---ccccccCC
Confidence 6677777777777776543 455677888887765 45677888888777766 35667888
Q ss_pred EEEccCCcccccCCCCCCCCcEEEcCCCcCccccchhcccCCCCCCEEEcCCCccccCCCcccccCCCCcEEEcCCCcCc
Q 042537 388 SIDISSNYFEGLIPPLPSNASVLNLSRNKFSESISFLCSINGHKLEFLDLSNNILSGRLPDCWMQFDRLAVLSLANNFFS 467 (789)
Q Consensus 388 ~L~l~~n~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 467 (789)
.|++++|...+.+|....+++.+++++| ++|++|++++|++++. + +.++++|+.|++++|+++
T Consensus 290 ~L~Ls~n~~l~~l~~~~~~L~~L~l~~~--------------~~L~~L~L~~N~l~~l-~--l~~l~~L~~L~l~~N~l~ 352 (457)
T 3bz5_A 290 ELDVTHNTQLYLLDCQAAGITELDLSQN--------------PKLVYLYLNNTELTEL-D--VSHNTKLKSLSCVNAHIQ 352 (457)
T ss_dssp CCCCTTCTTCCEEECTTCCCSCCCCTTC--------------TTCCEEECTTCCCSCC-C--CTTCTTCSEEECCSSCCC
T ss_pred EEECCCCcccceeccCCCcceEechhhc--------------ccCCEEECCCCccccc-c--cccCCcCcEEECCCCCCC
Confidence 9999999888877776777888877766 6899999999999874 3 888999999999999998
Q ss_pred ccCCccccccCcccEEEccCCeeeeeCCcCccCCCCCcEEeCCCCcccccCchhhhhcCCCCcEEEcCCC
Q 042537 468 GKIPKSMGFLHSIQTLSLYNNSLIGELPSFFKSCSQLILMDLGKNGLSGEIPTWIGEGLPKLVVLSLKSN 537 (789)
Q Consensus 468 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~l~~L~~L~L~~n 537 (789)
+ ++.|+.|++++|.+.|. ..+..|+.+++++|+++|.+|..++....++.....+.+
T Consensus 353 ~--------l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~~~~~~~~~~~~~~~~~~ 409 (457)
T 3bz5_A 353 D--------FSSVGKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVSPDLLDQFGNPMNIEPGDG 409 (457)
T ss_dssp B--------CTTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECCTTCBCTTSCCCEEEESSS
T ss_pred C--------ccccccccccCCcEEec-----ceeeecCccccccCcEEEEcChhHhcccCceeeccCCCC
Confidence 5 24567778899988876 345667888999999999999877655555555544433
No 31
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=4.6e-35 Score=320.53 Aligned_cols=363 Identities=17% Similarity=0.113 Sum_probs=247.0
Q ss_pred CcccccCCCCCCEEecCCCcCCCCCCccccCCCCCcEEeccCccCCCCcchHHhhCCCCCCCEEEcCCCCCCCCcccccc
Q 042537 92 IPEFIGSLNKLRYLSLSSAEFEGPIPSQLGNLSRLKYLDLSYINLNKSRDWLRIIDKLPSLRTLNLEHCHLPPIIPSDLL 171 (789)
Q Consensus 92 ~~~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~ 171 (789)
.+..++++++|++|++++|.+++. | +++.+++|++|++++|+++++ | ++.+++|++|++++|.+++. +
T Consensus 34 ~~~~~~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~---~--~~~l~~L~~L~Ls~N~l~~~-~---- 101 (457)
T 3bz5_A 34 DTISEEQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL---D--LSQNTNLTYLACDSNKLTNL-D---- 101 (457)
T ss_dssp SEEEHHHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC---C--CTTCTTCSEEECCSSCCSCC-C----
T ss_pred cccChhHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE---c--cccCCCCCEEECcCCCCcee-e----
Confidence 556788999999999999999964 5 799999999999999999985 2 88999999999999998874 2
Q ss_pred ccccCCCCCCeEEccCCCCCCCchhHHHhhcCCCcEEEccCCCCcccCchhhhcCCCCcEEECCCCCccEEecCCCcCcc
Q 042537 172 HLNFSTSSLGALYLFENSLSSSIYPWLFNISSKLVVLDLDSNLLQGSLLEPFDRMVSLRTLYLGFNELEELFLGKNRLNG 251 (789)
Q Consensus 172 ~~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~L~~L~L~~n~l~~ 251 (789)
+..+ ++|++|++++|++++ ++ +. ..++|++|++++|++++. .++.+++|+.|++++| ...+
T Consensus 102 ~~~l--~~L~~L~L~~N~l~~-l~--~~-~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n----------~~~~ 162 (457)
T 3bz5_A 102 VTPL--TKLTYLNCDTNKLTK-LD--VS-QNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLN----------KKIT 162 (457)
T ss_dssp CTTC--TTCCEEECCSSCCSC-CC--CT-TCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTC----------SCCC
T ss_pred cCCC--CcCCEEECCCCcCCe-ec--CC-CCCcCCEEECCCCcccee---ccccCCcCCEEECCCC----------Cccc
Confidence 3445 788888888888875 33 33 334788888888887764 2667777777777744 2222
Q ss_pred cchhhhhCCCCCCEEEccCCCCCCccChhhhhcCCCCcEEEccCCcccccccCCCCCcccceeEeccCccCCCCCchhcc
Q 042537 252 TINQWLSRMYKLDALSLSGNSLTGVVTESVFSELSNLKALHLDDNSFTLKFSHDWIPPFQLIIILLGSCQMGPHFPKWLQ 331 (789)
Q Consensus 252 ~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~ 331 (789)
.+ .++.+++|++|++++|++++ +| +..+++|++|++++|++++. .+..+++|+.|++++|.+.+ +| +.
T Consensus 163 ~~--~~~~l~~L~~L~ls~n~l~~-l~---l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~ 230 (457)
T 3bz5_A 163 KL--DVTPQTQLTTLDCSFNKITE-LD---VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VT 230 (457)
T ss_dssp CC--CCTTCTTCCEEECCSSCCCC-CC---CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CT
T ss_pred cc--ccccCCcCCEEECCCCccce-ec---cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--cc
Confidence 22 25667778888888887774 43 66777777777777777643 24444455555555554443 22 44
Q ss_pred CCCCccEEEccCCcCCCCcchhHhhhccCCCeeeeccccccccCCCCCCCCCCCCCEEEccCCcccccCCCCCCCCcEEE
Q 042537 332 TQNQIEVLDISDAGISDTVPDWFWDLSHTIADFNLSNNHIKGKLPNLSLRFDPFSSSIDISSNYFEGLIPPLPSNASVLN 411 (789)
Q Consensus 332 ~l~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~ 411 (789)
.+++|+.|++++|++++.. ...++.|+.++++.| +++.++
T Consensus 231 ~l~~L~~L~l~~N~l~~~~-----------------------------~~~l~~L~~L~l~~n-----------~L~~L~ 270 (457)
T 3bz5_A 231 PLTQLTYFDCSVNPLTELD-----------------------------VSTLSKLTTLHCIQT-----------DLLEID 270 (457)
T ss_dssp TCTTCSEEECCSSCCSCCC-----------------------------CTTCTTCCEEECTTC-----------CCSCCC
T ss_pred ccCCCCEEEeeCCcCCCcC-----------------------------HHHCCCCCEEeccCC-----------CCCEEE
Confidence 4444444444444444322 223344555555443 234455
Q ss_pred cCCCcCccccchhcccCCCCCCEEEcCCCccccCCCcccccCCCCcEEEcCCCcCcccCCccccccCcccEEEccCCeee
Q 042537 412 LSRNKFSESISFLCSINGHKLEFLDLSNNILSGRLPDCWMQFDRLAVLSLANNFFSGKIPKSMGFLHSIQTLSLYNNSLI 491 (789)
Q Consensus 412 l~~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 491 (789)
+++|.+.+.++. ..+++|+.|++++|...+.+|. ...+|+.|++++| ++|++|++++|+++
T Consensus 271 l~~n~~~~~~~~---~~l~~L~~L~Ls~n~~l~~l~~---~~~~L~~L~l~~~-------------~~L~~L~L~~N~l~ 331 (457)
T 3bz5_A 271 LTHNTQLIYFQA---EGCRKIKELDVTHNTQLYLLDC---QAAGITELDLSQN-------------PKLVYLYLNNTELT 331 (457)
T ss_dssp CTTCTTCCEEEC---TTCTTCCCCCCTTCTTCCEEEC---TTCCCSCCCCTTC-------------TTCCEEECTTCCCS
T ss_pred CCCCccCCcccc---cccccCCEEECCCCcccceecc---CCCcceEechhhc-------------ccCCEEECCCCccc
Confidence 566655544442 1226777777777776655553 2344555544443 67889999999998
Q ss_pred eeCCcCccCCCCCcEEeCCCCcccccCchhhhhcCCCCcEEEcCCCcccccCCCCccCCCcCceEeccCCcccccCCccc
Q 042537 492 GELPSFFKSCSQLILMDLGKNGLSGEIPTWIGEGLPKLVVLSLKSNKFHGNIPFQVCQLSYIQILDLSLNNISGIIPKCL 571 (789)
Q Consensus 492 ~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~ 571 (789)
+. + +..+++|+.|++++|++++ ++.|+.|++++|.+.|. ..+..|+.+++++|+++|.+|..+
T Consensus 332 ~l-~--l~~l~~L~~L~l~~N~l~~---------l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~~~ 394 (457)
T 3bz5_A 332 EL-D--VSHNTKLKSLSCVNAHIQD---------FSSVGKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVSPDL 394 (457)
T ss_dssp CC-C--CTTCTTCSEEECCSSCCCB---------CTTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECCTTC
T ss_pred cc-c--cccCCcCcEEECCCCCCCC---------ccccccccccCCcEEec-----ceeeecCccccccCcEEEEcChhH
Confidence 74 3 8888999999999999883 35667778888888865 356778889999999999888765
Q ss_pred cc
Q 042537 572 NN 573 (789)
Q Consensus 572 ~~ 573 (789)
..
T Consensus 395 ~~ 396 (457)
T 3bz5_A 395 LD 396 (457)
T ss_dssp BC
T ss_pred hc
Confidence 43
No 32
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=7.6e-36 Score=331.66 Aligned_cols=142 Identities=20% Similarity=0.184 Sum_probs=84.1
Q ss_pred CCCCEEEcCCCccccCCCcccccCCCCcEEEcCCCcCcccCCccccccCcccEEEccCCeeeeeCCcCccCCCCCcEEeC
Q 042537 430 HKLEFLDLSNNILSGRLPDCWMQFDRLAVLSLANNFFSGKIPKSMGFLHSIQTLSLYNNSLIGELPSFFKSCSQLILMDL 509 (789)
Q Consensus 430 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 509 (789)
++|++|++++|.+++..+..|.++++|+.|++++|++++..+..|..+++|+.|++++|.+.+..+..|..+++|+.|++
T Consensus 128 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l 207 (477)
T 2id5_A 128 YNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEI 207 (477)
T ss_dssp TTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEE
T ss_pred ccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeC
Confidence 55666666666666666666666666666666666666555555666666666666666666666666666666666666
Q ss_pred CCCcccccCchhhhhcCCCCcEEEcCCCcccccCCCCccCCCcCceEeccCCcccccCCcccc
Q 042537 510 GKNGLSGEIPTWIGEGLPKLVVLSLKSNKFHGNIPFQVCQLSYIQILDLSLNNISGIIPKCLN 572 (789)
Q Consensus 510 s~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~ 572 (789)
++|...+.+|...+ ...+|+.|++++|++++..+..+..+++|+.|++++|++++..+..|.
T Consensus 208 ~~~~~~~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 269 (477)
T 2id5_A 208 SHWPYLDTMTPNCL-YGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLH 269 (477)
T ss_dssp ECCTTCCEECTTTT-TTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCT
T ss_pred CCCccccccCcccc-cCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhcc
Confidence 66665555555544 234555555555555533323445555555555555555544443333
No 33
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=2.2e-35 Score=307.43 Aligned_cols=259 Identities=32% Similarity=0.531 Sum_probs=242.3
Q ss_pred CCCCEEEcCCCcccc--CCCcccccCCCCcEEEcCC-CcCcccCCccccccCcccEEEccCCeeeeeCCcCccCCCCCcE
Q 042537 430 HKLEFLDLSNNILSG--RLPDCWMQFDRLAVLSLAN-NFFSGKIPKSMGFLHSIQTLSLYNNSLIGELPSFFKSCSQLIL 506 (789)
Q Consensus 430 ~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 506 (789)
.+++.|++++|.+++ .+|..|.++++|++|++++ |.+.+.+|..|..+++|++|++++|.+++..|..|..+++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 578999999999998 8899999999999999995 9999999999999999999999999999999999999999999
Q ss_pred EeCCCCcccccCchhhhhcCCCCcEEEcCCCcccccCCCCccCCC-cCceEeccCCcccccCCccccccccCcccCCCcc
Q 042537 507 MDLGKNGLSGEIPTWIGEGLPKLVVLSLKSNKFHGNIPFQVCQLS-YIQILDLSLNNISGIIPKCLNNFTGMAQKSSSNL 585 (789)
Q Consensus 507 L~ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~ 585 (789)
|++++|.+.+.+|..+. .+++|++|++++|++++.+|..+..++ +|++|++++|++++..|..+..+. |
T Consensus 130 L~Ls~N~l~~~~p~~~~-~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L-------- 199 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSIS-SLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-L-------- 199 (313)
T ss_dssp EECCSSEEESCCCGGGG-GCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-C--------
T ss_pred EeCCCCccCCcCChHHh-cCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-c--------
Confidence 99999999988998887 799999999999999999999999998 999999999999998888877654 4
Q ss_pred ccccCcccccccccccccccceeEEEeeccccccccccCceeEEEcccCccccccchhhhccccCcEEEccCCcceeecC
Q 042537 586 AITSNYTFERQGIEFLESYVDNVVLTWKGSQHEYRSTLGLVKILDFSMNKLSGTIPEEIMDLVGLVALNLSRNNLTGQIT 665 (789)
Q Consensus 586 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p 665 (789)
+.|++++|++++.+|..|..+++|+.|+|++|++++.+|
T Consensus 200 -----------------------------------------~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 238 (313)
T 1ogq_A 200 -----------------------------------------AFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG 238 (313)
T ss_dssp -----------------------------------------SEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGG
T ss_pred -----------------------------------------cEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecC
Confidence 899999999999999999999999999999999997666
Q ss_pred cccccCCCCCEEeCCCCcccccCchhhhcCCCCCeEeccCCcccccCCCCCccccccccccCCCCCCCCCCCCCCC
Q 042537 666 PKIDQLKSLDFLDLSQNQFVGGIPSSLCQLSRLSVMNLSYNNLSGKIPLGTQLQSFNASVYAGNPELCGLPLRNKC 741 (789)
Q Consensus 666 ~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~n~~lc~~~l~~~c 741 (789)
. +..+++|++|+|++|++++.+|..+..+++|++|++++|+++|.+|....+..+....+.|||++||.|+. .|
T Consensus 239 ~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~~lc~~p~~-~C 312 (313)
T 1ogq_A 239 K-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLP-AC 312 (313)
T ss_dssp G-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEESTTSS-CC
T ss_pred c-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCccccccChHHhcCCCCccCCCCC-CC
Confidence 5 88999999999999999999999999999999999999999999999888889999999999999998876 46
No 34
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=5.2e-34 Score=315.23 Aligned_cols=346 Identities=24% Similarity=0.347 Sum_probs=242.7
Q ss_pred cCCCCcEEECCCCCccEEecCCCcCcccchhhhhCCCCCCEEEccCCCCCCccChhhhhcCCCCcEEEccCCcccccccC
Q 042537 225 RMVSLRTLYLGFNELEELFLGKNRLNGTINQWLSRMYKLDALSLSGNSLTGVVTESVFSELSNLKALHLDDNSFTLKFSH 304 (789)
Q Consensus 225 ~l~~L~~L~L~~n~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~ 304 (789)
.+++++.|+++++. +.. +| .+..+++|++|++++|.+.+ ++. +..+++|++|++++|.+....+
T Consensus 44 ~l~~l~~L~l~~~~----------i~~-l~-~~~~l~~L~~L~Ls~n~l~~-~~~--~~~l~~L~~L~l~~n~l~~~~~- 107 (466)
T 1o6v_A 44 DLDQVTTLQADRLG----------IKS-ID-GVEYLNNLTQINFSNNQLTD-ITP--LKNLTKLVDILMNNNQIADITP- 107 (466)
T ss_dssp HHHTCCEEECCSSC----------CCC-CT-TGGGCTTCCEEECCSSCCCC-CGG--GTTCTTCCEEECCSSCCCCCGG-
T ss_pred HhccccEEecCCCC----------Ccc-Cc-chhhhcCCCEEECCCCccCC-chh--hhccccCCEEECCCCccccChh-
Confidence 35566777776443 332 22 26667788888888887773 443 7777788888887777764332
Q ss_pred CCCCcccceeEeccCccCCCCCchhccCCCCccEEEccCCcCCCCcchhHhhhccCCCeeeeccccccccCCCCCCCCCC
Q 042537 305 DWIPPFQLIIILLGSCQMGPHFPKWLQTQNQIEVLDISDAGISDTVPDWFWDLSHTIADFNLSNNHIKGKLPNLSLRFDP 384 (789)
Q Consensus 305 ~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~ 384 (789)
+..+++|++|++++|.+++..+ + ...++|++|++++|.+++ ++ .+..++
T Consensus 108 -------------------------~~~l~~L~~L~L~~n~l~~~~~--~-~~l~~L~~L~l~~n~l~~-~~--~~~~l~ 156 (466)
T 1o6v_A 108 -------------------------LANLTNLTGLTLFNNQITDIDP--L-KNLTNLNRLELSSNTISD-IS--ALSGLT 156 (466)
T ss_dssp -------------------------GTTCTTCCEEECCSSCCCCCGG--G-TTCTTCSEEEEEEEEECC-CG--GGTTCT
T ss_pred -------------------------hcCCCCCCEEECCCCCCCCChH--H-cCCCCCCEEECCCCccCC-Ch--hhccCC
Confidence 4455555555555555554332 2 223455555555555542 22 233444
Q ss_pred CCCEEEccCCcccccCCCCCCCCcEEEcCCCcCccccchhcccCCCCCCEEEcCCCccccCCCcccccCCCCcEEEcCCC
Q 042537 385 FSSSIDISSNYFEGLIPPLPSNASVLNLSRNKFSESISFLCSINGHKLEFLDLSNNILSGRLPDCWMQFDRLAVLSLANN 464 (789)
Q Consensus 385 ~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n 464 (789)
+|+.++++ + .+.+..+ ...+++|++|++++|.+++. ..+..+++|+.|++++|
T Consensus 157 ~L~~L~l~-~---------------------~~~~~~~---~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n 209 (466)
T 1o6v_A 157 SLQQLSFG-N---------------------QVTDLKP---LANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNN 209 (466)
T ss_dssp TCSEEEEE-E---------------------SCCCCGG---GTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSS
T ss_pred cccEeecC-C---------------------cccCchh---hccCCCCCEEECcCCcCCCC--hhhccCCCCCEEEecCC
Confidence 44444443 1 1111111 11227788888888887643 34778888888888888
Q ss_pred cCcccCCccccccCcccEEEccCCeeeeeCCcCccCCCCCcEEeCCCCcccccCchhhhhcCCCCcEEEcCCCcccccCC
Q 042537 465 FFSGKIPKSMGFLHSIQTLSLYNNSLIGELPSFFKSCSQLILMDLGKNGLSGEIPTWIGEGLPKLVVLSLKSNKFHGNIP 544 (789)
Q Consensus 465 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~ 544 (789)
.+.+..| +..+++|++|++++|.+.+. ..+..+++|++|++++|.+.+ ++. + ..+++|+.|++++|++++..+
T Consensus 210 ~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~-~~~-~-~~l~~L~~L~l~~n~l~~~~~ 282 (466)
T 1o6v_A 210 QISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISN-LAP-L-SGLTKLTELKLGANQISNISP 282 (466)
T ss_dssp CCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCC-CGG-G-TTCTTCSEEECCSSCCCCCGG
T ss_pred ccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCcccc-chh-h-hcCCCCCEEECCCCccCcccc
Confidence 8886544 66788888888888888754 457788899999999998884 443 3 368899999999999886544
Q ss_pred CCccCCCcCceEeccCCcccccCCccccccccCcccCCCccccccCcccccccccccccccceeEEEeeccccccccccC
Q 042537 545 FQVCQLSYIQILDLSLNNISGIIPKCLNNFTGMAQKSSSNLAITSNYTFERQGIEFLESYVDNVVLTWKGSQHEYRSTLG 624 (789)
Q Consensus 545 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 624 (789)
+..+++|+.|++++|++++..+ +..+ +
T Consensus 283 --~~~l~~L~~L~L~~n~l~~~~~--~~~l-------------------------------------------------~ 309 (466)
T 1o6v_A 283 --LAGLTALTNLELNENQLEDISP--ISNL-------------------------------------------------K 309 (466)
T ss_dssp --GTTCTTCSEEECCSSCCSCCGG--GGGC-------------------------------------------------T
T ss_pred --ccCCCccCeEEcCCCcccCchh--hcCC-------------------------------------------------C
Confidence 7788999999999998886543 3333 3
Q ss_pred ceeEEEcccCccccccchhhhccccCcEEEccCCcceeecCcccccCCCCCEEeCCCCcccccCchhhhcCCCCCeEecc
Q 042537 625 LVKILDFSMNKLSGTIPEEIMDLVGLVALNLSRNNLTGQITPKIDQLKSLDFLDLSQNQFVGGIPSSLCQLSRLSVMNLS 704 (789)
Q Consensus 625 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls 704 (789)
.|+.|++++|++++..| +..+++|++|++++|++++. +.+..+++|+.|++++|++++..| +..+++|+.|+++
T Consensus 310 ~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~ 383 (466)
T 1o6v_A 310 NLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLN 383 (466)
T ss_dssp TCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECC
T ss_pred CCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEecc
Confidence 44899999999997766 78999999999999999864 578999999999999999998877 8899999999999
Q ss_pred CCcccc
Q 042537 705 YNNLSG 710 (789)
Q Consensus 705 ~N~l~~ 710 (789)
+|++++
T Consensus 384 ~n~~~~ 389 (466)
T 1o6v_A 384 DQAWTN 389 (466)
T ss_dssp CEEEEC
T ss_pred CCcccC
Confidence 999987
No 35
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=6.5e-33 Score=306.43 Aligned_cols=191 Identities=27% Similarity=0.392 Sum_probs=120.1
Q ss_pred CCCCEEEcCCCccccCCCcccccCCCCcEEEcCCCcCcccCCccccccCcccEEEccCCeeeeeCCcCccCCCCCcEEeC
Q 042537 430 HKLEFLDLSNNILSGRLPDCWMQFDRLAVLSLANNFFSGKIPKSMGFLHSIQTLSLYNNSLIGELPSFFKSCSQLILMDL 509 (789)
Q Consensus 430 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 509 (789)
++|++|++++|.+++..+ +..+++|+.|++++|++++. ..+..+++|++|++++|.+.+..+ +..+++|+.|++
T Consensus 199 ~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l 272 (466)
T 1o6v_A 199 TNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKL 272 (466)
T ss_dssp TTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEEC
T ss_pred CCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEEC
Confidence 556666666666654433 55566666666666666642 345566666666666666665433 666666777777
Q ss_pred CCCcccccCchhhhhcCCCCcEEEcCCCcccccCCCCccCCCcCceEeccCCcccccCCccccccccCcccCCCcccccc
Q 042537 510 GKNGLSGEIPTWIGEGLPKLVVLSLKSNKFHGNIPFQVCQLSYIQILDLSLNNISGIIPKCLNNFTGMAQKSSSNLAITS 589 (789)
Q Consensus 510 s~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~ 589 (789)
++|.++ .++. + ..+++|+.|++++|++.+..+ +..+++|+.|++++|++++..| +..++
T Consensus 273 ~~n~l~-~~~~-~-~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~-------------- 331 (466)
T 1o6v_A 273 GANQIS-NISP-L-AGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLT-------------- 331 (466)
T ss_dssp CSSCCC-CCGG-G-TTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCT--------------
T ss_pred CCCccC-cccc-c-cCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCc--------------
Confidence 777666 3433 2 256677777777777665433 5666777777777776665443 33333
Q ss_pred CcccccccccccccccceeEEEeeccccccccccCceeEEEcccCccccccchhhhccccCcEEEccCCcceeecCcccc
Q 042537 590 NYTFERQGIEFLESYVDNVVLTWKGSQHEYRSTLGLVKILDFSMNKLSGTIPEEIMDLVGLVALNLSRNNLTGQITPKID 669 (789)
Q Consensus 590 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~ 669 (789)
.|+.|++++|++++. ..+..+++|+.|++++|++++..| +.
T Consensus 332 -----------------------------------~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~ 372 (466)
T 1o6v_A 332 -----------------------------------KLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LA 372 (466)
T ss_dssp -----------------------------------TCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GT
T ss_pred -----------------------------------cCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hh
Confidence 336777777777644 356677777777777777776555 67
Q ss_pred cCCCCCEEeCCCCcccc
Q 042537 670 QLKSLDFLDLSQNQFVG 686 (789)
Q Consensus 670 ~l~~L~~L~Ls~N~l~~ 686 (789)
.+++|+.|++++|.+++
T Consensus 373 ~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 373 NLTRITQLGLNDQAWTN 389 (466)
T ss_dssp TCTTCCEEECCCEEEEC
T ss_pred cCCCCCEEeccCCcccC
Confidence 77777777777777765
No 36
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=9.7e-34 Score=314.72 Aligned_cols=343 Identities=17% Similarity=0.157 Sum_probs=246.2
Q ss_pred EEEccCCcCCCCcchhHhhhccCCCeeeeccccccccCCCCCCCCCCCCCEEEccCCcccccCCCC---CCCCcEEEcCC
Q 042537 338 VLDISDAGISDTVPDWFWDLSHTIADFNLSNNHIKGKLPNLSLRFDPFSSSIDISSNYFEGLIPPL---PSNASVLNLSR 414 (789)
Q Consensus 338 ~L~ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~ 414 (789)
.++.+++.++.. |..+ ++.++.|++++|.+++..+. .+..+++|++|++++|.+++..|.. +++|+.|++++
T Consensus 15 ~v~c~~~~l~~i-p~~~---~~~l~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~ 89 (477)
T 2id5_A 15 AVLCHRKRFVAV-PEGI---PTETRLLDLGKNRIKTLNQD-EFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRS 89 (477)
T ss_dssp EEECCSCCCSSC-CSCC---CTTCSEEECCSSCCCEECTT-TTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred EEEeCCCCcCcC-CCCC---CCCCcEEECCCCccceECHh-HccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCC
Confidence 455555555432 2221 23566666666666543333 5566666666666666666654433 34556666666
Q ss_pred CcCccccchhcccCCCCCCEEEcCCCccccCCCcccccCCCCcEEEcCCCcCcccCCccccccCcccEEEccCCeeeeeC
Q 042537 415 NKFSESISFLCSINGHKLEFLDLSNNILSGRLPDCWMQFDRLAVLSLANNFFSGKIPKSMGFLHSIQTLSLYNNSLIGEL 494 (789)
Q Consensus 415 n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 494 (789)
|++.+..+..+ ..+++|++|++++|.+++..+..|.++++|+.|++++|.+.+..+..|..+++|++|++++|.+++..
T Consensus 90 n~l~~~~~~~~-~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 168 (477)
T 2id5_A 90 NRLKLIPLGVF-TGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIP 168 (477)
T ss_dssp SCCCSCCTTSS-TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCC
T ss_pred CcCCccCcccc-cCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccC
Confidence 66555443322 12267788888888777777777777888888888888877777777777778888888888777666
Q ss_pred CcCccCCCCCcEEeCCCCcccccCchhhhhcCCCCcEEEcCCCcccccCCCCccCCCcCceEeccCCcccccCCcccccc
Q 042537 495 PSFFKSCSQLILMDLGKNGLSGEIPTWIGEGLPKLVVLSLKSNKFHGNIPFQVCQLSYIQILDLSLNNISGIIPKCLNNF 574 (789)
Q Consensus 495 ~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l 574 (789)
+..|..+++|+.|++++|.+.+ ++...+..+++|+.|++++|...+.++.......+|+.|++++|++++..+..+..+
T Consensus 169 ~~~l~~l~~L~~L~l~~n~i~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l 247 (477)
T 2id5_A 169 TEALSHLHGLIVLRLRHLNINA-IRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHL 247 (477)
T ss_dssp HHHHTTCTTCCEEEEESCCCCE-ECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTC
T ss_pred hhHhcccCCCcEEeCCCCcCcE-eChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCc
Confidence 6667777788888888887773 444334467778888888777766666666666678888888887775444455444
Q ss_pred ccCcccCCCccccccCcccccccccccccccceeEEEeeccccccccccCceeEEEcccCccccccchhhhccccCcEEE
Q 042537 575 TGMAQKSSSNLAITSNYTFERQGIEFLESYVDNVVLTWKGSQHEYRSTLGLVKILDFSMNKLSGTIPEEIMDLVGLVALN 654 (789)
Q Consensus 575 ~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 654 (789)
++ |+.|++++|++++..+..|..+++|++|+
T Consensus 248 ~~-------------------------------------------------L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 278 (477)
T 2id5_A 248 VY-------------------------------------------------LRFLNLSYNPISTIEGSMLHELLRLQEIQ 278 (477)
T ss_dssp TT-------------------------------------------------CCEEECCSSCCCEECTTSCTTCTTCCEEE
T ss_pred cc-------------------------------------------------cCeeECCCCcCCccChhhccccccCCEEE
Confidence 44 49999999999988888899999999999
Q ss_pred ccCCcceeecCcccccCCCCCEEeCCCCcccccCchhhhcCCCCCeEeccCCcccccCCCCCccccccccccCCCCCCCC
Q 042537 655 LSRNNLTGQITPKIDQLKSLDFLDLSQNQFVGGIPSSLCQLSRLSVMNLSYNNLSGKIPLGTQLQSFNASVYAGNPELCG 734 (789)
Q Consensus 655 Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~n~~lc~ 734 (789)
|++|++++..|..|..+++|+.|+|++|++++..+..|..+++|++|++++|++.|.++....+.......+.++...|.
T Consensus 279 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~~~~~~~~~~~~~~~~~~~~C~ 358 (477)
T 2id5_A 279 LVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCRLLWVFRRRWRLNFNRQQPTCA 358 (477)
T ss_dssp CCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGGGHHHHTTTTSSCCTTCCCBEE
T ss_pred CCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccchHhHHhhhhccccCccCceeC
Confidence 99999999999999999999999999999998888889999999999999999998877543333333455778888887
Q ss_pred CC
Q 042537 735 LP 736 (789)
Q Consensus 735 ~~ 736 (789)
.|
T Consensus 359 ~p 360 (477)
T 2id5_A 359 TP 360 (477)
T ss_dssp ES
T ss_pred Cc
Confidence 65
No 37
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=8.5e-34 Score=306.32 Aligned_cols=238 Identities=20% Similarity=0.202 Sum_probs=159.3
Q ss_pred CCCCEEEcCCCccccCCCcccccCCCCcEEEcCCCcCcccCCccccccCcccEEEccCCeeeeeCCcCccCCCCCcEEeC
Q 042537 430 HKLEFLDLSNNILSGRLPDCWMQFDRLAVLSLANNFFSGKIPKSMGFLHSIQTLSLYNNSLIGELPSFFKSCSQLILMDL 509 (789)
Q Consensus 430 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 509 (789)
++|++|++++|.+++..+..|.++++|+.|++++|++++. .+..+++|+.|++++|.+.+. ...++|+.|++
T Consensus 141 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l~~~-----~~~~~L~~L~l 212 (390)
T 3o6n_A 141 PKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLSTL-----AIPIAVEELDA 212 (390)
T ss_dssp TTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCCSEE-----ECCSSCSEEEC
T ss_pred CCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeeccccccccc-----CCCCcceEEEC
Confidence 4555666666666555555566666666666666666643 234456666666666666532 22346677777
Q ss_pred CCCcccccCchhhhhcCCCCcEEEcCCCcccccCCCCccCCCcCceEeccCCcccccCCccccccccCcccCCCcccccc
Q 042537 510 GKNGLSGEIPTWIGEGLPKLVVLSLKSNKFHGNIPFQVCQLSYIQILDLSLNNISGIIPKCLNNFTGMAQKSSSNLAITS 589 (789)
Q Consensus 510 s~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~ 589 (789)
++|.+. .+|... .++|+.|++++|++++. ..+..+++|++|++++|.+++..|..|..+++|
T Consensus 213 ~~n~l~-~~~~~~---~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L------------ 274 (390)
T 3o6n_A 213 SHNSIN-VVRGPV---NVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRL------------ 274 (390)
T ss_dssp CSSCCC-EEECCC---CSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSC------------
T ss_pred CCCeee-eccccc---cccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccccC------------
Confidence 777766 444432 35677777777777643 356677777777777777776666666555544
Q ss_pred CcccccccccccccccceeEEEeeccccccccccCceeEEEcccCccccccchhhhccccCcEEEccCCcceeecCcccc
Q 042537 590 NYTFERQGIEFLESYVDNVVLTWKGSQHEYRSTLGLVKILDFSMNKLSGTIPEEIMDLVGLVALNLSRNNLTGQITPKID 669 (789)
Q Consensus 590 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~ 669 (789)
+.|++++|+++ .+|..+..+++|++|+|++|+++ .+|..+.
T Consensus 275 -------------------------------------~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~ 315 (390)
T 3o6n_A 275 -------------------------------------ERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQP 315 (390)
T ss_dssp -------------------------------------CEEECCSSCCC-EEECSSSCCTTCCEEECCSSCCC-CCGGGHH
T ss_pred -------------------------------------CEEECCCCcCc-ccCcccCCCCCCCEEECCCCcce-ecCcccc
Confidence 77777777777 35666677888888888888888 5677788
Q ss_pred cCCCCCEEeCCCCcccccCchhhhcCCCCCeEeccCCcccccCCCCCccccccccccCCCCCCCCCC
Q 042537 670 QLKSLDFLDLSQNQFVGGIPSSLCQLSRLSVMNLSYNNLSGKIPLGTQLQSFNASVYAGNPELCGLP 736 (789)
Q Consensus 670 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~n~~lc~~~ 736 (789)
.+++|+.|++++|+++.. | +..+++|++|++++|++.+.... ..+..+....+.+++..|.++
T Consensus 316 ~l~~L~~L~L~~N~i~~~-~--~~~~~~L~~L~l~~N~~~~~~~~-~~~~~~~~~~~~~~~~~c~~~ 378 (390)
T 3o6n_A 316 QFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCNSLR-ALFRNVARPAVDDADQHCKID 378 (390)
T ss_dssp HHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHHHHH-HHTTTCCTTTBCCCCSCCCTT
T ss_pred ccCcCCEEECCCCcccee-C--chhhccCCEEEcCCCCccchhHH-HHHHHHHhhcccccCceeccc
Confidence 888888888888888755 2 56778899999999998875332 344455555567777777643
No 38
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=3e-33 Score=318.63 Aligned_cols=238 Identities=20% Similarity=0.193 Sum_probs=175.3
Q ss_pred CCCCEEEcCCCccccCCCcccccCCCCcEEEcCCCcCcccCCccccccCcccEEEccCCeeeeeCCcCccCCCCCcEEeC
Q 042537 430 HKLEFLDLSNNILSGRLPDCWMQFDRLAVLSLANNFFSGKIPKSMGFLHSIQTLSLYNNSLIGELPSFFKSCSQLILMDL 509 (789)
Q Consensus 430 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 509 (789)
++|++|++++|.+++..|..|.++++|+.|++++|.+++.. +..+++|+.|++++|.+.+. ...++|+.|++
T Consensus 147 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n~l~~l-----~~~~~L~~L~l 218 (597)
T 3oja_B 147 PKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLSTL-----AIPIAVEELDA 218 (597)
T ss_dssp TTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCSSCCSEE-----ECCTTCSEEEC
T ss_pred CCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcccCccccc-----cCCchhheeec
Confidence 55666666666666666666777777777777777776542 44566777777777776542 23456777777
Q ss_pred CCCcccccCchhhhhcCCCCcEEEcCCCcccccCCCCccCCCcCceEeccCCcccccCCccccccccCcccCCCcccccc
Q 042537 510 GKNGLSGEIPTWIGEGLPKLVVLSLKSNKFHGNIPFQVCQLSYIQILDLSLNNISGIIPKCLNNFTGMAQKSSSNLAITS 589 (789)
Q Consensus 510 s~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~ 589 (789)
++|.+. .++..+ .++|+.|++++|.+++ +..+..+++|+.|++++|.+++..|..|..+++|
T Consensus 219 s~n~l~-~~~~~~---~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L------------ 280 (597)
T 3oja_B 219 SHNSIN-VVRGPV---NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRL------------ 280 (597)
T ss_dssp CSSCCC-EEECSC---CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSC------------
T ss_pred cCCccc-cccccc---CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCccCC------------
Confidence 777776 555433 3578888888888775 3567778888888888888887777777666555
Q ss_pred CcccccccccccccccceeEEEeeccccccccccCceeEEEcccCccccccchhhhccccCcEEEccCCcceeecCcccc
Q 042537 590 NYTFERQGIEFLESYVDNVVLTWKGSQHEYRSTLGLVKILDFSMNKLSGTIPEEIMDLVGLVALNLSRNNLTGQITPKID 669 (789)
Q Consensus 590 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~ 669 (789)
+.|+|++|++++ +|..+..+++|+.|+|++|.++ .+|..+.
T Consensus 281 -------------------------------------~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~ 321 (597)
T 3oja_B 281 -------------------------------------ERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQP 321 (597)
T ss_dssp -------------------------------------CEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHH
T ss_pred -------------------------------------CEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccc
Confidence 788888888874 5666777889999999999998 6788888
Q ss_pred cCCCCCEEeCCCCcccccCchhhhcCCCCCeEeccCCcccccCCCCCccccccccccCCCCCCCCCC
Q 042537 670 QLKSLDFLDLSQNQFVGGIPSSLCQLSRLSVMNLSYNNLSGKIPLGTQLQSFNASVYAGNPELCGLP 736 (789)
Q Consensus 670 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~n~~lc~~~ 736 (789)
.+++|+.|+|++|.+++.. +..+++|++|++++|++.|..+. ..+..+....+.+++..|+.+
T Consensus 322 ~l~~L~~L~L~~N~l~~~~---~~~~~~L~~L~l~~N~~~~~~~~-~~~~~~~~~~~~~~~~~C~~~ 384 (597)
T 3oja_B 322 QFDRLENLYLDHNSIVTLK---LSTHHTLKNLTLSHNDWDCNSLR-ALFRNVARPAVDDADQHCKID 384 (597)
T ss_dssp HHTTCSEEECCSSCCCCCC---CCTTCCCSEEECCSSCEEHHHHH-HHTTTCCTTTBCCCCCCCCTT
T ss_pred cCCCCCEEECCCCCCCCcC---hhhcCCCCEEEeeCCCCCChhHH-HHHHHHhhhccccccccCCcc
Confidence 8999999999999998653 56778999999999999887543 345566666788888899864
No 39
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=2.7e-31 Score=286.75 Aligned_cols=310 Identities=17% Similarity=0.215 Sum_probs=208.7
Q ss_pred CCCCeEEccCCCCCCCchhHHHhhcCCCcEEEccCCCCcccCchhhhcCCCCcEEECCCCCccEEecCCCcCcccchhhh
Q 042537 178 SSLGALYLFENSLSSSIYPWLFNISSKLVVLDLDSNLLQGSLLEPFDRMVSLRTLYLGFNELEELFLGKNRLNGTINQWL 257 (789)
Q Consensus 178 ~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~L~~L~L~~n~l~~~~~~~l 257 (789)
++++.+++++|.+. .+|..++...++|++|++++|.+++..+..|..+++|++|+++ +|.+++..|..|
T Consensus 45 ~~l~~l~l~~~~l~-~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~----------~n~l~~~~~~~~ 113 (390)
T 3o6n_A 45 NNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMG----------FNAIRYLPPHVF 113 (390)
T ss_dssp CCCSEEEEESCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECC----------SSCCCCCCTTTT
T ss_pred CCceEEEecCCchh-hCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECC----------CCCCCcCCHHHh
Confidence 55666666666554 4455444444456666666666665555556666666665555 344444445555
Q ss_pred hCCCCCCEEEccCCCCCCccChhhhhcCCCCcEEEccCCcccccccCCCCCcccceeEeccCccCCCCCchhccCCCCcc
Q 042537 258 SRMYKLDALSLSGNSLTGVVTESVFSELSNLKALHLDDNSFTLKFSHDWIPPFQLIIILLGSCQMGPHFPKWLQTQNQIE 337 (789)
Q Consensus 258 ~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~ 337 (789)
+++++|++|++++|.++ .+|...|.++++|++|++++|++. ...+..+..+++|+
T Consensus 114 ~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~------------------------~~~~~~~~~l~~L~ 168 (390)
T 3o6n_A 114 QNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLE------------------------RIEDDTFQATTSLQ 168 (390)
T ss_dssp TTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCC------------------------BCCTTTTSSCTTCC
T ss_pred cCCCCCCEEECCCCccC-cCCHHHhcCCCCCcEEECCCCccC------------------------ccChhhccCCCCCC
Confidence 55666666666666655 444444555555666555555554 34445566666677
Q ss_pred EEEccCCcCCCCcchhHhhhccCCCeeeeccccccccCCCCCCCCCCCCCEEEccCCcccccCCCCCCCCcEEEcCCCcC
Q 042537 338 VLDISDAGISDTVPDWFWDLSHTIADFNLSNNHIKGKLPNLSLRFDPFSSSIDISSNYFEGLIPPLPSNASVLNLSRNKF 417 (789)
Q Consensus 338 ~L~ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~i 417 (789)
+|++++|.+++.... ..++|+.+++++|.++ +.. .+.+++.|++++|.+
T Consensus 169 ~L~l~~n~l~~~~~~----~l~~L~~L~l~~n~l~-------------------------~~~--~~~~L~~L~l~~n~l 217 (390)
T 3o6n_A 169 NLQLSSNRLTHVDLS----LIPSLFHANVSYNLLS-------------------------TLA--IPIAVEELDASHNSI 217 (390)
T ss_dssp EEECCSSCCSBCCGG----GCTTCSEEECCSSCCS-------------------------EEE--CCSSCSEEECCSSCC
T ss_pred EEECCCCcCCccccc----cccccceeeccccccc-------------------------ccC--CCCcceEEECCCCee
Confidence 777777666544221 1234555555555443 211 123455555555555
Q ss_pred ccccchhcccCCCCCCEEEcCCCccccCCCcccccCCCCcEEEcCCCcCcccCCccccccCcccEEEccCCeeeeeCCcC
Q 042537 418 SESISFLCSINGHKLEFLDLSNNILSGRLPDCWMQFDRLAVLSLANNFFSGKIPKSMGFLHSIQTLSLYNNSLIGELPSF 497 (789)
Q Consensus 418 ~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 497 (789)
....... .++|+.|++++|.+++. ..+..+++|++|++++|.+++..|..|..+++|++|++++|++++. |..
T Consensus 218 ~~~~~~~----~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~ 290 (390)
T 3o6n_A 218 NVVRGPV----NVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVAL-NLY 290 (390)
T ss_dssp CEEECCC----CSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEE-ECS
T ss_pred eeccccc----cccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCccc-Ccc
Confidence 5443221 16788999999988754 5788899999999999999988899999999999999999999864 556
Q ss_pred ccCCCCCcEEeCCCCcccccCchhhhhcCCCCcEEEcCCCcccccCCCCccCCCcCceEeccCCccccc
Q 042537 498 FKSCSQLILMDLGKNGLSGEIPTWIGEGLPKLVVLSLKSNKFHGNIPFQVCQLSYIQILDLSLNNISGI 566 (789)
Q Consensus 498 ~~~l~~L~~L~ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 566 (789)
+..+++|++|++++|++. .+|..+. .+++|++|++++|+++.. + +..+++|+.|++++|++...
T Consensus 291 ~~~l~~L~~L~L~~n~l~-~~~~~~~-~l~~L~~L~L~~N~i~~~-~--~~~~~~L~~L~l~~N~~~~~ 354 (390)
T 3o6n_A 291 GQPIPTLKVLDLSHNHLL-HVERNQP-QFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCN 354 (390)
T ss_dssp SSCCTTCCEEECCSSCCC-CCGGGHH-HHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHH
T ss_pred cCCCCCCCEEECCCCcce-ecCcccc-ccCcCCEEECCCCcccee-C--chhhccCCEEEcCCCCccch
Confidence 678999999999999998 7888776 689999999999999854 3 67889999999999998753
No 40
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=3.5e-31 Score=281.20 Aligned_cols=196 Identities=24% Similarity=0.336 Sum_probs=116.7
Q ss_pred cccCCCCcEEEcCCCcCcccCCccccccCcccEEEccCCeeeeeCCcCccCCCCCcEEeCCCCcccccCchhhhhcCCCC
Q 042537 450 WMQFDRLAVLSLANNFFSGKIPKSMGFLHSIQTLSLYNNSLIGELPSFFKSCSQLILMDLGKNGLSGEIPTWIGEGLPKL 529 (789)
Q Consensus 450 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~l~~L 529 (789)
+..+++|++|++++|.+.+..+ +..+++|++|++++|.+.+..+ +..+++|+.|++++|.+. .++. + ..+++|
T Consensus 151 ~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~-~~~~-~-~~~~~L 223 (347)
T 4fmz_A 151 LSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQIT-DITP-V-ANMTRL 223 (347)
T ss_dssp GTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCC-CCGG-G-GGCTTC
T ss_pred hhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccccccc--ccCCCccceeecccCCCC-CCch-h-hcCCcC
Confidence 4455555555555555543222 4455555555555555553322 555556666666666655 2332 2 245666
Q ss_pred cEEEcCCCcccccCCCCccCCCcCceEeccCCcccccCCccccccccCcccCCCccccccCcccccccccccccccceeE
Q 042537 530 VVLSLKSNKFHGNIPFQVCQLSYIQILDLSLNNISGIIPKCLNNFTGMAQKSSSNLAITSNYTFERQGIEFLESYVDNVV 609 (789)
Q Consensus 530 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 609 (789)
++|++++|++++..+ +..+++|++|++++|.+++. ..+..+
T Consensus 224 ~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l----------------------------------- 264 (347)
T 4fmz_A 224 NSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI--NAVKDL----------------------------------- 264 (347)
T ss_dssp CEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTC-----------------------------------
T ss_pred CEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC--hhHhcC-----------------------------------
Confidence 666666666654332 55666666666666666542 122222
Q ss_pred EEeeccccccccccCceeEEEcccCccccccchhhhccccCcEEEccCCcceeecCcccccCCCCCEEeCCCCcccccCc
Q 042537 610 LTWKGSQHEYRSTLGLVKILDFSMNKLSGTIPEEIMDLVGLVALNLSRNNLTGQITPKIDQLKSLDFLDLSQNQFVGGIP 689 (789)
Q Consensus 610 ~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p 689 (789)
+.|+.|++++|++++. +.+..+++|++|++++|++++..|..++.+++|+.|++++|++++..|
T Consensus 265 --------------~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~ 328 (347)
T 4fmz_A 265 --------------TKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP 328 (347)
T ss_dssp --------------TTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG
T ss_pred --------------CCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC
Confidence 2336777777777643 346777777788888887777777777777788888888888776655
Q ss_pred hhhhcCCCCCeEeccCCccc
Q 042537 690 SSLCQLSRLSVMNLSYNNLS 709 (789)
Q Consensus 690 ~~l~~l~~L~~L~ls~N~l~ 709 (789)
+..+++|++|++++|+++
T Consensus 329 --~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 329 --LASLSKMDSADFANQVIK 346 (347)
T ss_dssp --GGGCTTCSEESSSCC---
T ss_pred --hhhhhccceeehhhhccc
Confidence 677778888888887764
No 41
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.98 E-value=1.3e-30 Score=276.75 Aligned_cols=192 Identities=24% Similarity=0.357 Sum_probs=134.8
Q ss_pred CCCCEEEcCCCccccCCCcccccCCCCcEEEcCCCcCcccCCccccccCcccEEEccCCeeeeeCCcCccCCCCCcEEeC
Q 042537 430 HKLEFLDLSNNILSGRLPDCWMQFDRLAVLSLANNFFSGKIPKSMGFLHSIQTLSLYNNSLIGELPSFFKSCSQLILMDL 509 (789)
Q Consensus 430 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 509 (789)
++|++|++++|.+.+..+ +..+++|+.|++++|.+.+..+ +..+++|+.|++++|.+.+..+ +..+++|++|++
T Consensus 155 ~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l 228 (347)
T 4fmz_A 155 TGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKI 228 (347)
T ss_dssp TTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEEC
T ss_pred CCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEc
Confidence 455555555555543322 5566666666666666664322 5666677777777777664433 666777777777
Q ss_pred CCCcccccCchhhhhcCCCCcEEEcCCCcccccCCCCccCCCcCceEeccCCcccccCCccccccccCcccCCCcccccc
Q 042537 510 GKNGLSGEIPTWIGEGLPKLVVLSLKSNKFHGNIPFQVCQLSYIQILDLSLNNISGIIPKCLNNFTGMAQKSSSNLAITS 589 (789)
Q Consensus 510 s~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~ 589 (789)
++|+++ .++. + ..+++|++|++++|++++. ..+..+++|++|++++|++++. ..+..++
T Consensus 229 ~~n~l~-~~~~-~-~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~-------------- 287 (347)
T 4fmz_A 229 GNNKIT-DLSP-L-ANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLS-------------- 287 (347)
T ss_dssp CSSCCC-CCGG-G-TTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCT--------------
T ss_pred cCCccC-CCcc-h-hcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCC--------------
Confidence 777776 4444 3 3577888888888877753 3577788888888888887754 2333333
Q ss_pred CcccccccccccccccceeEEEeeccccccccccCceeEEEcccCccccccchhhhccccCcEEEccCCcceeecCcccc
Q 042537 590 NYTFERQGIEFLESYVDNVVLTWKGSQHEYRSTLGLVKILDFSMNKLSGTIPEEIMDLVGLVALNLSRNNLTGQITPKID 669 (789)
Q Consensus 590 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~ 669 (789)
.|+.|++++|++++..|..|+.+++|++|++++|++++..| +.
T Consensus 288 -----------------------------------~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~ 330 (347)
T 4fmz_A 288 -----------------------------------QLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LA 330 (347)
T ss_dssp -----------------------------------TCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GG
T ss_pred -----------------------------------CCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hh
Confidence 34889999999998888899999999999999999997655 88
Q ss_pred cCCCCCEEeCCCCccc
Q 042537 670 QLKSLDFLDLSQNQFV 685 (789)
Q Consensus 670 ~l~~L~~L~Ls~N~l~ 685 (789)
.+++|+.|++++|.++
T Consensus 331 ~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 331 SLSKMDSADFANQVIK 346 (347)
T ss_dssp GCTTCSEESSSCC---
T ss_pred hhhccceeehhhhccc
Confidence 8999999999999886
No 42
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.97 E-value=1.1e-30 Score=297.30 Aligned_cols=310 Identities=17% Similarity=0.208 Sum_probs=209.7
Q ss_pred CCCCeEEccCCCCCCCchhHHHhhcCCCcEEEccCCCCcccCchhhhcCCCCcEEECCCCCccEEecCCCcCcccchhhh
Q 042537 178 SSLGALYLFENSLSSSIYPWLFNISSKLVVLDLDSNLLQGSLLEPFDRMVSLRTLYLGFNELEELFLGKNRLNGTINQWL 257 (789)
Q Consensus 178 ~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~L~~L~L~~n~l~~~~~~~l 257 (789)
.+++.+++++|.+. .+|+.++...++|++|++++|.+++..+..|..+++|+.|+|+ +|.+++..|..|
T Consensus 51 ~~l~~l~l~~~~l~-~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~----------~n~l~~~~~~~~ 119 (597)
T 3oja_B 51 NNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMG----------FNAIRYLPPHVF 119 (597)
T ss_dssp CCCSEEEESSCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECC----------SSCCCCCCTTTT
T ss_pred CCceEEEeeCCCCC-CcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECC----------CCcCCCCCHHHH
Confidence 55666666666554 4455444444466666666666665555566666666666665 444444555555
Q ss_pred hCCCCCCEEEccCCCCCCccChhhhhcCCCCcEEEccCCcccccccCCCCCcccceeEeccCccCCCCCchhccCCCCcc
Q 042537 258 SRMYKLDALSLSGNSLTGVVTESVFSELSNLKALHLDDNSFTLKFSHDWIPPFQLIIILLGSCQMGPHFPKWLQTQNQIE 337 (789)
Q Consensus 258 ~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~ 337 (789)
+++++|++|+|++|.++ .+|...|.++++|++|++++|.+. +..|..+..+++|+
T Consensus 120 ~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~Ls~N~l~------------------------~~~~~~~~~l~~L~ 174 (597)
T 3oja_B 120 QNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLE------------------------RIEDDTFQATTSLQ 174 (597)
T ss_dssp TTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCC------------------------BCCTTTTTTCTTCC
T ss_pred cCCCCCCEEEeeCCCCC-CCCHHHhccCCCCCEEEeeCCcCC------------------------CCChhhhhcCCcCc
Confidence 66666666666666665 444444555566666666555554 34455566666777
Q ss_pred EEEccCCcCCCCcchhHhhhccCCCeeeeccccccccCCCCCCCCCCCCCEEEccCCcccccCCCCCCCCcEEEcCCCcC
Q 042537 338 VLDISDAGISDTVPDWFWDLSHTIADFNLSNNHIKGKLPNLSLRFDPFSSSIDISSNYFEGLIPPLPSNASVLNLSRNKF 417 (789)
Q Consensus 338 ~L~ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~i 417 (789)
+|++++|.+++..... .++|+.|++++|.+++ +.. +.+|+.|++++|.+
T Consensus 175 ~L~L~~N~l~~~~~~~----l~~L~~L~l~~n~l~~------l~~---------------------~~~L~~L~ls~n~l 223 (597)
T 3oja_B 175 NLQLSSNRLTHVDLSL----IPSLFHANVSYNLLST------LAI---------------------PIAVEELDASHNSI 223 (597)
T ss_dssp EEECTTSCCSBCCGGG----CTTCSEEECCSSCCSE------EEC---------------------CTTCSEEECCSSCC
T ss_pred EEECcCCCCCCcChhh----hhhhhhhhcccCcccc------ccC---------------------CchhheeeccCCcc
Confidence 7777777666543221 2345555555554441 111 23455555555555
Q ss_pred ccccchhcccCCCCCCEEEcCCCccccCCCcccccCCCCcEEEcCCCcCcccCCccccccCcccEEEccCCeeeeeCCcC
Q 042537 418 SESISFLCSINGHKLEFLDLSNNILSGRLPDCWMQFDRLAVLSLANNFFSGKIPKSMGFLHSIQTLSLYNNSLIGELPSF 497 (789)
Q Consensus 418 ~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 497 (789)
........ ++|+.|++++|.+++ +..+..+++|+.|++++|.+.+..|..|..+++|+.|++++|.+++. |..
T Consensus 224 ~~~~~~~~----~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l-~~~ 296 (597)
T 3oja_B 224 NVVRGPVN----VELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVAL-NLY 296 (597)
T ss_dssp CEEECSCC----SCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEE-ECS
T ss_pred cccccccC----CCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCC-Ccc
Confidence 44333221 578888888888875 36788899999999999999988899999999999999999999864 566
Q ss_pred ccCCCCCcEEeCCCCcccccCchhhhhcCCCCcEEEcCCCcccccCCCCccCCCcCceEeccCCccccc
Q 042537 498 FKSCSQLILMDLGKNGLSGEIPTWIGEGLPKLVVLSLKSNKFHGNIPFQVCQLSYIQILDLSLNNISGI 566 (789)
Q Consensus 498 ~~~l~~L~~L~ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 566 (789)
+..+++|+.|++++|.+. .+|..+. .+++|+.|++++|++.+. .+..+++|+.|++++|++.+.
T Consensus 297 ~~~l~~L~~L~Ls~N~l~-~i~~~~~-~l~~L~~L~L~~N~l~~~---~~~~~~~L~~L~l~~N~~~~~ 360 (597)
T 3oja_B 297 GQPIPTLKVLDLSHNHLL-HVERNQP-QFDRLENLYLDHNSIVTL---KLSTHHTLKNLTLSHNDWDCN 360 (597)
T ss_dssp SSCCTTCCEEECCSSCCC-CCGGGHH-HHTTCSEEECCSSCCCCC---CCCTTCCCSEEECCSSCEEHH
T ss_pred cccCCCCcEEECCCCCCC-ccCcccc-cCCCCCEEECCCCCCCCc---ChhhcCCCCEEEeeCCCCCCh
Confidence 778899999999999998 8888876 689999999999999854 266788999999999998754
No 43
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.97 E-value=4.9e-32 Score=283.78 Aligned_cols=270 Identities=19% Similarity=0.267 Sum_probs=201.1
Q ss_pred HHHHHHHHHHhhcCc-CCCCCCCCCCCC-CCCCCCCceeeeEec--------CCCCcEEEEEcCCCCCCCCcccccCccc
Q 042537 2 EEEREALLEFKQSLV-DEYGILSSWGRE-DDKRDCCYWRGVRCS--------NTTGHVIVLDLQVLVHSEPLKGTISPSL 71 (789)
Q Consensus 2 ~~~~~~ll~~~~~~~-~~~~~~~~w~~~-~~~~~~c~w~gv~c~--------~~~~~v~~l~L~~~~~~~~l~~~l~~~~ 71 (789)
.+|++||++||+++. |+.+.+++|... ....++|.|.|+.|. ....+|+.|+|++ +.+. .+|+.+
T Consensus 26 ~~~~~aLl~~k~~~~~~~~~~~~~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~----n~l~-~lp~~l 100 (328)
T 4fcg_A 26 RPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRS----VPLP-QFPDQA 100 (328)
T ss_dssp CCHHHHHHHHHHHHHHCCTTHHHHHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEES----SCCS-SCCSCG
T ss_pred chHHHHHHHHHHhccCCchhhhhhhcccccccccccccCCcchhhhHHHHhcccccceeEEEccC----CCch-hcChhh
Confidence 578999999999995 777778899310 146789999999995 2346888899888 6665 778888
Q ss_pred cCCCCCCEEeCCCCCCCCCCCcccccCCCCCCEEecCCCcCCCCCCccccCCCCCcEEeccCccCCCCcchHHhhC----
Q 042537 72 LKLYHLRHLDLSENDFSGSRIPEFIGSLNKLRYLSLSSAEFEGPIPSQLGNLSRLKYLDLSYINLNKSRDWLRIID---- 147 (789)
Q Consensus 72 ~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~---- 147 (789)
+++++|++|++++|.++ .+|..++.+++|++|+|++|.++ .+|..|+++++|++|++++|++.+. +|..+.
T Consensus 101 ~~l~~L~~L~L~~n~l~--~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~--~p~~~~~~~~ 175 (328)
T 4fcg_A 101 FRLSHLQHMTIDAAGLM--ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTE--LPEPLASTDA 175 (328)
T ss_dssp GGGTTCSEEEEESSCCC--CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCC--CCSCSEEEC-
T ss_pred hhCCCCCEEECCCCCcc--chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccc--cChhHhhccc
Confidence 88889999999988888 47888888889999999998888 6788888888899999888776653 445444
Q ss_pred -----CCCCCCEEEcCCCCCCCCccccccccccCCCCCCeEEccCCCCCCCchhHHHhhcCCCcEEEccCCCCcccCchh
Q 042537 148 -----KLPSLRTLNLEHCHLPPIIPSDLLHLNFSTSSLGALYLFENSLSSSIYPWLFNISSKLVVLDLDSNLLQGSLLEP 222 (789)
Q Consensus 148 -----~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~ 222 (789)
++++|++|++++|.++ .+| ..+..+ ++|++|++++|.+++ +|+.+..+. +|++|++++|.+.+.+|..
T Consensus 176 ~~~~~~l~~L~~L~L~~n~l~-~lp--~~l~~l--~~L~~L~L~~N~l~~-l~~~l~~l~-~L~~L~Ls~n~~~~~~p~~ 248 (328)
T 4fcg_A 176 SGEHQGLVNLQSLRLEWTGIR-SLP--ASIANL--QNLKSLKIRNSPLSA-LGPAIHHLP-KLEELDLRGCTALRNYPPI 248 (328)
T ss_dssp CCCEEESTTCCEEEEEEECCC-CCC--GGGGGC--TTCCEEEEESSCCCC-CCGGGGGCT-TCCEEECTTCTTCCBCCCC
T ss_pred hhhhccCCCCCEEECcCCCcC-cch--HhhcCC--CCCCEEEccCCCCCc-CchhhccCC-CCCEEECcCCcchhhhHHH
Confidence 3778888888888777 344 224444 777777777777773 555544443 7777777777777777777
Q ss_pred hhcCCCCcEEECCCCCccEEecCCCcCcccchhhhhCCCCCCEEEccCCCCCCccChhhhhcCCCCcEEEccCCccc
Q 042537 223 FDRMVSLRTLYLGFNELEELFLGKNRLNGTINQWLSRMYKLDALSLSGNSLTGVVTESVFSELSNLKALHLDDNSFT 299 (789)
Q Consensus 223 ~~~l~~L~~L~L~~n~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~ 299 (789)
|.++++|+.|+++ +|.+.+.+|..++++++|++|+|++|.+.+.+|. .+.++++|+.+++..+.+.
T Consensus 249 ~~~l~~L~~L~L~----------~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~-~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 249 FGGRAPLKRLILK----------DCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPS-LIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp TTCCCCCCEEECT----------TCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCG-GGGGSCTTCEEECCGGGSC
T ss_pred hcCCCCCCEEECC----------CCCchhhcchhhhcCCCCCEEeCCCCCchhhccH-HHhhccCceEEeCCHHHHH
Confidence 7777777777777 5556666777777777777777777777777776 4777777777777765544
No 44
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=6.5e-33 Score=307.05 Aligned_cols=387 Identities=18% Similarity=0.117 Sum_probs=195.7
Q ss_pred CCcEEEccCCCCcccCchh-hhcCCCCcEEECCCCCccEEecCCCcCcc----cchhhhhCCCCCCEEEccCCCCCCccC
Q 042537 204 KLVVLDLDSNLLQGSLLEP-FDRMVSLRTLYLGFNELEELFLGKNRLNG----TINQWLSRMYKLDALSLSGNSLTGVVT 278 (789)
Q Consensus 204 ~L~~L~Ls~n~i~~~~~~~-~~~l~~L~~L~L~~n~L~~L~L~~n~l~~----~~~~~l~~l~~L~~L~L~~n~l~~~~~ 278 (789)
+|++|++++|+++...... +..+++|++|+++ +|.+++ .++..+..+++|++|++++|.+.+..+
T Consensus 4 ~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~----------~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~ 73 (461)
T 1z7x_W 4 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLD----------DCGLTEARCKDISSALRVNPALAELNLRSNELGDVGV 73 (461)
T ss_dssp EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEE----------SSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHH
T ss_pred cceehhhhhcccCchhHHHHHhhcCCccEEEcc----------CCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHH
Confidence 4555555555554333222 4455555555555 333332 234556666666677776666653333
Q ss_pred hhhhhcCC----CCcEEEccCCcccccccCCCCCcccceeEeccCccCCCCCchhccCCCCccEEEccCCcCCCCcchhH
Q 042537 279 ESVFSELS----NLKALHLDDNSFTLKFSHDWIPPFQLIIILLGSCQMGPHFPKWLQTQNQIEVLDISDAGISDTVPDWF 354 (789)
Q Consensus 279 ~~~~~~l~----~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~n~i~~~~~~~~ 354 (789)
...+..++ +|++|++++|.++.... ..++..+..+++|++|++++|.+++..+..+
T Consensus 74 ~~l~~~l~~~~~~L~~L~L~~n~i~~~~~--------------------~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l 133 (461)
T 1z7x_W 74 HCVLQGLQTPSCKIQKLSLQNCCLTGAGC--------------------GVLSSTLRTLPTLQELHLSDNLLGDAGLQLL 133 (461)
T ss_dssp HHHHHTTCSTTCCCCEEECTTSCCBGGGH--------------------HHHHHHTTSCTTCCEEECCSSBCHHHHHHHH
T ss_pred HHHHHHHhhCCCceeEEEccCCCCCHHHH--------------------HHHHHHHccCCceeEEECCCCcCchHHHHHH
Confidence 32333344 46666666665542110 0234556666777777777777665444443
Q ss_pred hhhccCCCeeeeccccccccCCCCCCCCCCCCCEEEccCCcccccCCCCCCCCcEEEcCCCcCcccc----chhcccCCC
Q 042537 355 WDLSHTIADFNLSNNHIKGKLPNLSLRFDPFSSSIDISSNYFEGLIPPLPSNASVLNLSRNKFSESI----SFLCSINGH 430 (789)
Q Consensus 355 ~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~i~~~~----~~~~~~~~~ 430 (789)
..... ... .+|+.|++++|++++.. +... ...+
T Consensus 134 ~~~l~---------------------~~~---------------------~~L~~L~L~~n~l~~~~~~~l~~~l-~~~~ 170 (461)
T 1z7x_W 134 CEGLL---------------------DPQ---------------------CRLEKLQLEYCSLSAASCEPLASVL-RAKP 170 (461)
T ss_dssp HHHHT---------------------STT---------------------CCCCEEECTTSCCBGGGHHHHHHHH-HHCT
T ss_pred HHHHh---------------------cCC---------------------CcceEEECCCCCCCHHHHHHHHHHH-hhCC
Confidence 32110 001 12222222222222211 1100 0116
Q ss_pred CCCEEEcCCCccccCCCcccc-----cCCCCcEEEcCCCcCccc----CCccccccCcccEEEccCCeeeeeC-----Cc
Q 042537 431 KLEFLDLSNNILSGRLPDCWM-----QFDRLAVLSLANNFFSGK----IPKSMGFLHSIQTLSLYNNSLIGEL-----PS 496 (789)
Q Consensus 431 ~L~~L~Ls~n~l~~~~~~~~~-----~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~-----~~ 496 (789)
+|++|++++|.+++..+..+. ..++|+.|++++|.++.. ++..+..+++|++|++++|.+.... +.
T Consensus 171 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~ 250 (461)
T 1z7x_W 171 DFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPG 250 (461)
T ss_dssp TCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHH
T ss_pred CCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHH
Confidence 677777777777654333332 245777777777777643 3455556677777777777665421 22
Q ss_pred CccCCCCCcEEeCCCCccccc----CchhhhhcCCCCcEEEcCCCcccccCCCCcc-----CCCcCceEeccCCcccccC
Q 042537 497 FFKSCSQLILMDLGKNGLSGE----IPTWIGEGLPKLVVLSLKSNKFHGNIPFQVC-----QLSYIQILDLSLNNISGII 567 (789)
Q Consensus 497 ~~~~l~~L~~L~ls~n~l~~~----~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-----~l~~L~~L~Ls~N~l~~~~ 567 (789)
.+..+++|++|++++|.+++. ++..+. .+++|++|++++|.+.+..+..+. ..++|++|++++|.+++..
T Consensus 251 ~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~-~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~ 329 (461)
T 1z7x_W 251 LLHPSSRLRTLWIWECGITAKGCGDLCRVLR-AKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAAC 329 (461)
T ss_dssp HTSTTCCCCEEECTTSCCCHHHHHHHHHHHH-HCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGG
T ss_pred HhcCCCCceEEECcCCCCCHHHHHHHHHHHh-hCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHH
Confidence 233466777777777766632 344433 466677777777766543222222 1246666666666655431
Q ss_pred CccccccccCcccCCCccccccCcccccccccccccccceeEEEeeccccccccccCceeEEEcccCccccccchhhhc-
Q 042537 568 PKCLNNFTGMAQKSSSNLAITSNYTFERQGIEFLESYVDNVVLTWKGSQHEYRSTLGLVKILDFSMNKLSGTIPEEIMD- 646 (789)
Q Consensus 568 p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~- 646 (789)
...+.. ....++.|+.||+++|++++..+..+..
T Consensus 330 ~~~l~~---------------------------------------------~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~ 364 (461)
T 1z7x_W 330 CSHFSS---------------------------------------------VLAQNRFLLELQISNNRLEDAGVRELCQG 364 (461)
T ss_dssp HHHHHH---------------------------------------------HHHHCSSCCEEECCSSBCHHHHHHHHHHH
T ss_pred HHHHHH---------------------------------------------HHhhCCCccEEEccCCccccccHHHHHHH
Confidence 111100 0011223366666666665544444432
Q ss_pred ----cccCcEEEccCCccee----ecCcccccCCCCCEEeCCCCcccccCchhhh-----cCCCCCeEeccCCccc
Q 042537 647 ----LVGLVALNLSRNNLTG----QITPKIDQLKSLDFLDLSQNQFVGGIPSSLC-----QLSRLSVMNLSYNNLS 709 (789)
Q Consensus 647 ----l~~L~~L~Ls~N~l~~----~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~-----~l~~L~~L~ls~N~l~ 709 (789)
.++|++|+|++|++++ .+|..+..+++|++|++++|++++.....+. ....|+.|++.++.+.
T Consensus 365 l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~ 440 (461)
T 1z7x_W 365 LGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWS 440 (461)
T ss_dssp HTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCC
T ss_pred HcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccccC
Confidence 4466666666666654 4555556666666666666666543222221 1234555555555444
No 45
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=1.1e-29 Score=267.64 Aligned_cols=244 Identities=22% Similarity=0.191 Sum_probs=187.3
Q ss_pred CCCcEEEcCCCcCccccchhcccCCCCCCEEEcCCCccccCCCcccccCCCCcEEEcCCCcCcccCCccccccCcccEEE
Q 042537 405 SNASVLNLSRNKFSESISFLCSINGHKLEFLDLSNNILSGRLPDCWMQFDRLAVLSLANNFFSGKIPKSMGFLHSIQTLS 484 (789)
Q Consensus 405 ~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 484 (789)
++|+.|++++|++++..+... ..+++|++|++++|.++ .+|..+. ++|++|++++|++++..+..|..+++|++|+
T Consensus 78 ~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~ 153 (332)
T 2ft3_A 78 QHLYALVLVNNKISKIHEKAF-SPLRKLQKLYISKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIE 153 (332)
T ss_dssp TTCCEEECCSSCCCEECGGGS-TTCTTCCEEECCSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEE
T ss_pred CCCcEEECCCCccCccCHhHh-hCcCCCCEEECCCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEE
Confidence 344444444444444333221 12277888888888887 4444443 7888888888888877667788888888999
Q ss_pred ccCCeee--eeCCcCccCCCCCcEEeCCCCcccccCchhhhhcCCCCcEEEcCCCcccccCCCCccCCCcCceEeccCCc
Q 042537 485 LYNNSLI--GELPSFFKSCSQLILMDLGKNGLSGEIPTWIGEGLPKLVVLSLKSNKFHGNIPFQVCQLSYIQILDLSLNN 562 (789)
Q Consensus 485 L~~n~l~--~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~ 562 (789)
+++|.++ +..+..+..+ +|++|++++|+++ .+|..++ ++|++|++++|++++..+..+..+++|++|++++|+
T Consensus 154 l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~-~l~~~~~---~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~ 228 (332)
T 2ft3_A 154 MGGNPLENSGFEPGAFDGL-KLNYLRISEAKLT-GIPKDLP---ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQ 228 (332)
T ss_dssp CCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCS-SCCSSSC---SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSC
T ss_pred CCCCccccCCCCcccccCC-ccCEEECcCCCCC-ccCcccc---CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCc
Confidence 9888885 3667777777 8999999999988 6777653 688999999999988777888899999999999999
Q ss_pred ccccCCccccccccCcccCCCccccccCcccccccccccccccceeEEEeeccccccccccCceeEEEcccCccccccch
Q 042537 563 ISGIIPKCLNNFTGMAQKSSSNLAITSNYTFERQGIEFLESYVDNVVLTWKGSQHEYRSTLGLVKILDFSMNKLSGTIPE 642 (789)
Q Consensus 563 l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~ 642 (789)
+++..+..+..+++| +.|++++|+++ .+|.
T Consensus 229 l~~~~~~~~~~l~~L-------------------------------------------------~~L~L~~N~l~-~lp~ 258 (332)
T 2ft3_A 229 IRMIENGSLSFLPTL-------------------------------------------------RELHLDNNKLS-RVPA 258 (332)
T ss_dssp CCCCCTTGGGGCTTC-------------------------------------------------CEEECCSSCCC-BCCT
T ss_pred CCcCChhHhhCCCCC-------------------------------------------------CEEECCCCcCe-ecCh
Confidence 988777677666555 88999999998 7888
Q ss_pred hhhccccCcEEEccCCcceeecCccccc------CCCCCEEeCCCCccc--ccCchhhhcCCCCCeEeccCCc
Q 042537 643 EIMDLVGLVALNLSRNNLTGQITPKIDQ------LKSLDFLDLSQNQFV--GGIPSSLCQLSRLSVMNLSYNN 707 (789)
Q Consensus 643 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~------l~~L~~L~Ls~N~l~--~~~p~~l~~l~~L~~L~ls~N~ 707 (789)
.+..+++|++|++++|++++..+..|.. ..+|+.|++++|.+. +..|..|..+++|+.+++++|+
T Consensus 259 ~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 259 GLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp TGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred hhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 8999999999999999999776666654 367899999999987 6778889999999999999884
No 46
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=1.9e-29 Score=265.56 Aligned_cols=289 Identities=22% Similarity=0.216 Sum_probs=184.0
Q ss_pred CccEEEccCCcCCCCcchhHhhhccCCCeeeeccccccccCCCCCCCCCCCCCEEEccCCcccccCCCCCCCCcEEEcCC
Q 042537 335 QIEVLDISDAGISDTVPDWFWDLSHTIADFNLSNNHIKGKLPNLSLRFDPFSSSIDISSNYFEGLIPPLPSNASVLNLSR 414 (789)
Q Consensus 335 ~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~ 414 (789)
+++.++++++.++.. |..+ .+.++.|++++|.+++..+. .+..+++|++|++++|.+++..|..+..
T Consensus 32 ~l~~l~~~~~~l~~l-p~~~---~~~l~~L~L~~n~i~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~-------- 98 (330)
T 1xku_A 32 HLRVVQCSDLGLEKV-PKDL---PPDTALLDLQNNKITEIKDG-DFKNLKNLHTLILINNKISKISPGAFAP-------- 98 (330)
T ss_dssp ETTEEECTTSCCCSC-CCSC---CTTCCEEECCSSCCCCBCTT-TTTTCTTCCEEECCSSCCCCBCTTTTTT--------
T ss_pred CCeEEEecCCCcccc-CccC---CCCCeEEECCCCcCCEeChh-hhccCCCCCEEECCCCcCCeeCHHHhcC--------
Confidence 455566666555432 2221 23455555555555532222 3444444555555554444433322211
Q ss_pred CcCccccchhcccCCCCCCEEEcCCCccccCCCcccccCCCCcEEEcCCCcCcccCCccccccCcccEEEccCCeeee--
Q 042537 415 NKFSESISFLCSINGHKLEFLDLSNNILSGRLPDCWMQFDRLAVLSLANNFFSGKIPKSMGFLHSIQTLSLYNNSLIG-- 492 (789)
Q Consensus 415 n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-- 492 (789)
+++|++|++++|.++ .+|..+. ++|++|++++|++++..+..|..+++|++|++++|.+..
T Consensus 99 --------------l~~L~~L~Ls~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 161 (330)
T 1xku_A 99 --------------LVKLERLYLSKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSG 161 (330)
T ss_dssp --------------CTTCCEEECCSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGG
T ss_pred --------------CCCCCEEECCCCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccC
Confidence 156677777777666 3343332 567777777777776666667777777777777777743
Q ss_pred eCCcCccCCCCCcEEeCCCCcccccCchhhhhcCCCCcEEEcCCCcccccCCCCccCCCcCceEeccCCcccccCCcccc
Q 042537 493 ELPSFFKSCSQLILMDLGKNGLSGEIPTWIGEGLPKLVVLSLKSNKFHGNIPFQVCQLSYIQILDLSLNNISGIIPKCLN 572 (789)
Q Consensus 493 ~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~ 572 (789)
..+..+.++++|++|++++|.++ .+|..++ ++|++|++++|++++..+..+..+++|+.|++++|++++..+..+.
T Consensus 162 ~~~~~~~~l~~L~~L~l~~n~l~-~l~~~~~---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 237 (330)
T 1xku_A 162 IENGAFQGMKKLSYIRIADTNIT-TIPQGLP---PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLA 237 (330)
T ss_dssp BCTTGGGGCTTCCEEECCSSCCC-SCCSSCC---TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGG
T ss_pred cChhhccCCCCcCEEECCCCccc-cCCcccc---ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhcc
Confidence 55666777777777777777777 5665543 6777888888887777777777778888888888877766665555
Q ss_pred ccccCcccCCCccccccCcccccccccccccccceeEEEeeccccccccccCceeEEEcccCccccccchhhhccccCcE
Q 042537 573 NFTGMAQKSSSNLAITSNYTFERQGIEFLESYVDNVVLTWKGSQHEYRSTLGLVKILDFSMNKLSGTIPEEIMDLVGLVA 652 (789)
Q Consensus 573 ~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 652 (789)
.+++| +.|++++|+++ .+|..+..+++|++
T Consensus 238 ~l~~L-------------------------------------------------~~L~L~~N~l~-~lp~~l~~l~~L~~ 267 (330)
T 1xku_A 238 NTPHL-------------------------------------------------RELHLNNNKLV-KVPGGLADHKYIQV 267 (330)
T ss_dssp GSTTC-------------------------------------------------CEEECCSSCCS-SCCTTTTTCSSCCE
T ss_pred CCCCC-------------------------------------------------CEEECCCCcCc-cCChhhccCCCcCE
Confidence 55444 77888888877 67777778888888
Q ss_pred EEccCCcceeecCccccc------CCCCCEEeCCCCcccc--cCchhhhcCCCCCeEeccCCc
Q 042537 653 LNLSRNNLTGQITPKIDQ------LKSLDFLDLSQNQFVG--GIPSSLCQLSRLSVMNLSYNN 707 (789)
Q Consensus 653 L~Ls~N~l~~~~p~~~~~------l~~L~~L~Ls~N~l~~--~~p~~l~~l~~L~~L~ls~N~ 707 (789)
|++++|++++..+..|.. .+.|+.|++++|.+.. ..|..|..+..++.+++++|+
T Consensus 268 L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 268 VYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp EECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred EECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 888888887665555543 3677788888888753 556777778888888888774
No 47
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=1.4e-32 Score=304.44 Aligned_cols=402 Identities=20% Similarity=0.161 Sum_probs=242.3
Q ss_pred CCCCeEEccCCCCCCCchhHHHhhcCCCcEEEccCCCCccc----CchhhhcCCCCcEEECCCCCccEEecCCCcCcccc
Q 042537 178 SSLGALYLFENSLSSSIYPWLFNISSKLVVLDLDSNLLQGS----LLEPFDRMVSLRTLYLGFNELEELFLGKNRLNGTI 253 (789)
Q Consensus 178 ~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~i~~~----~~~~~~~l~~L~~L~L~~n~L~~L~L~~n~l~~~~ 253 (789)
++|++|++++|+++......++...++|++|++++|.++.. ++..+..+++|++|+++ +|.+.+..
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls----------~n~l~~~~ 72 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR----------SNELGDVG 72 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECT----------TCCCHHHH
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCC----------CCcCChHH
Confidence 45666666666665444444444455777777777777642 34556667777777777 44444433
Q ss_pred hhhh-hCCC----CCCEEEccCCCCCC----ccChhhhhcCCCCcEEEccCCcccccccCCCCCcccceeEeccCccCCC
Q 042537 254 NQWL-SRMY----KLDALSLSGNSLTG----VVTESVFSELSNLKALHLDDNSFTLKFSHDWIPPFQLIIILLGSCQMGP 324 (789)
Q Consensus 254 ~~~l-~~l~----~L~~L~L~~n~l~~----~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~~~~~~ 324 (789)
+..+ ..++ +|++|++++|.++. .++. .+..+++|++|++++|.+.......+
T Consensus 73 ~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~-~l~~~~~L~~L~Ls~n~i~~~~~~~l------------------ 133 (461)
T 1z7x_W 73 VHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSS-TLRTLPTLQELHLSDNLLGDAGLQLL------------------ 133 (461)
T ss_dssp HHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHH-HTTSCTTCCEEECCSSBCHHHHHHHH------------------
T ss_pred HHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHH-HHccCCceeEEECCCCcCchHHHHHH------------------
Confidence 3333 3344 58888888887763 2232 56777788888888777653221111
Q ss_pred CCchh-ccCCCCccEEEccCCcCCCCcchhHhhhccCCCeeeeccccccccCCCCCCCCCCCCCEEEccCCcccccCCCC
Q 042537 325 HFPKW-LQTQNQIEVLDISDAGISDTVPDWFWDLSHTIADFNLSNNHIKGKLPNLSLRFDPFSSSIDISSNYFEGLIPPL 403 (789)
Q Consensus 325 ~~~~~-l~~l~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~ 403 (789)
... ....++|++|++++|++++.....+... +..++.|++|++++|.+....+.
T Consensus 134 --~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~----------------------l~~~~~L~~L~L~~n~i~~~~~~- 188 (461)
T 1z7x_W 134 --CEGLLDPQCRLEKLQLEYCSLSAASCEPLASV----------------------LRAKPDFKELTVSNNDINEAGVR- 188 (461)
T ss_dssp --HHHHTSTTCCCCEEECTTSCCBGGGHHHHHHH----------------------HHHCTTCCEEECCSSBCHHHHHH-
T ss_pred --HHHHhcCCCcceEEECCCCCCCHHHHHHHHHH----------------------HhhCCCCCEEECcCCCcchHHHH-
Confidence 011 1123456666666666554433222211 01111122222222222110000
Q ss_pred CCCCcEEEcCCCcCccccchhcccCCCCCCEEEcCCCccccC----CCcccccCCCCcEEEcCCCcCcccC-----Cccc
Q 042537 404 PSNASVLNLSRNKFSESISFLCSINGHKLEFLDLSNNILSGR----LPDCWMQFDRLAVLSLANNFFSGKI-----PKSM 474 (789)
Q Consensus 404 ~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~-----~~~~ 474 (789)
.+........++|++|++++|.+++. ++..+..+++|+.|++++|.+.... +..+
T Consensus 189 ----------------~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~ 252 (461)
T 1z7x_W 189 ----------------VLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLL 252 (461)
T ss_dssp ----------------HHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHT
T ss_pred ----------------HHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHh
Confidence 00000000114677777777776643 3556667778888888888776532 2223
Q ss_pred cccCcccEEEccCCeeeee----CCcCccCCCCCcEEeCCCCcccccCchhhhh----cCCCCcEEEcCCCccccc----
Q 042537 475 GFLHSIQTLSLYNNSLIGE----LPSFFKSCSQLILMDLGKNGLSGEIPTWIGE----GLPKLVVLSLKSNKFHGN---- 542 (789)
Q Consensus 475 ~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~----~l~~L~~L~L~~n~l~~~---- 542 (789)
..+++|++|++++|.++.. ++..+..+++|++|++++|.+.+..+..+.. ..++|++|++++|.+++.
T Consensus 253 ~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~ 332 (461)
T 1z7x_W 253 HPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSH 332 (461)
T ss_dssp STTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHH
T ss_pred cCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHH
Confidence 3467888888888888753 4556777888899999998887544433332 236899999999998765
Q ss_pred CCCCccCCCcCceEeccCCcccccCCccccccccCcccCCCccccccCcccccccccccccccceeEEEeeccccccccc
Q 042537 543 IPFQVCQLSYIQILDLSLNNISGIIPKCLNNFTGMAQKSSSNLAITSNYTFERQGIEFLESYVDNVVLTWKGSQHEYRST 622 (789)
Q Consensus 543 ~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 622 (789)
++..+..+++|++|++++|++++..+..+... + ...
T Consensus 333 l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~--l------------------------------------------~~~ 368 (461)
T 1z7x_W 333 FSSVLAQNRFLLELQISNNRLEDAGVRELCQG--L------------------------------------------GQP 368 (461)
T ss_dssp HHHHHHHCSSCCEEECCSSBCHHHHHHHHHHH--H------------------------------------------TST
T ss_pred HHHHHhhCCCccEEEccCCccccccHHHHHHH--H------------------------------------------cCC
Confidence 34556677999999999998876544333221 0 011
Q ss_pred cCceeEEEcccCcccc----ccchhhhccccCcEEEccCCcceeecCcccc-----cCCCCCEEeCCCCcccccCchhhh
Q 042537 623 LGLVKILDFSMNKLSG----TIPEEIMDLVGLVALNLSRNNLTGQITPKID-----QLKSLDFLDLSQNQFVGGIPSSLC 693 (789)
Q Consensus 623 l~~L~~L~Ls~N~l~~----~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~-----~l~~L~~L~Ls~N~l~~~~p~~l~ 693 (789)
.+.|+.|++++|++++ .+|..+..+++|++|+|++|++++.....+. ...+|+.|++.++.+....++.+.
T Consensus 369 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~~~~~~~l~ 448 (461)
T 1z7x_W 369 GSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQ 448 (461)
T ss_dssp TCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHHHHHHHH
T ss_pred CCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccccCHHHHHHHH
Confidence 3456999999999986 7888999999999999999999865322221 245789999998888766555443
No 48
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.96 E-value=1.1e-28 Score=259.84 Aligned_cols=265 Identities=23% Similarity=0.295 Sum_probs=126.6
Q ss_pred CCEEEccCCcccccCCCCCCCCcEEEcCCCcCccccchhcccCCCCCCEEEcCCCccccCCCcccccCCCCcEEEcCCCc
Q 042537 386 SSSIDISSNYFEGLIPPLPSNASVLNLSRNKFSESISFLCSINGHKLEFLDLSNNILSGRLPDCWMQFDRLAVLSLANNF 465 (789)
Q Consensus 386 L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~ 465 (789)
++.++++++.++..+...++.++.|++++|++++..+.... .+++|++|++++|.+++..|..|.++++|++|++++|+
T Consensus 33 l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~i~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 111 (330)
T 1xku_A 33 LRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFK-NLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 111 (330)
T ss_dssp TTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTTTTT-TCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSC
T ss_pred CeEEEecCCCccccCccCCCCCeEEECCCCcCCEeChhhhc-cCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCc
Confidence 45555555555443333344445555555544443332111 12455555555555554445555555555555555555
Q ss_pred CcccCCccccccCcccEEEccCCeeeeeCCcCccCCCCCcEEeCCCCcccc--cCchhhhhcCCCCcEEEcCCCcccccC
Q 042537 466 FSGKIPKSMGFLHSIQTLSLYNNSLIGELPSFFKSCSQLILMDLGKNGLSG--EIPTWIGEGLPKLVVLSLKSNKFHGNI 543 (789)
Q Consensus 466 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~--~~p~~~~~~l~~L~~L~L~~n~l~~~~ 543 (789)
++ .+|..+. ++|++|++++|.+.+..+..|.++++|++|++++|.+.. ..+..+ ..+++|++|++++|+++. +
T Consensus 112 l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-~~l~~L~~L~l~~n~l~~-l 186 (330)
T 1xku_A 112 LK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAF-QGMKKLSYIRIADTNITT-I 186 (330)
T ss_dssp CS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGG-GGCTTCCEEECCSSCCCS-C
T ss_pred CC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhc-cCCCCcCEEECCCCcccc-C
Confidence 55 2333222 445555555555554444445555555555555555531 222222 245555555555555542 2
Q ss_pred CCCccCCCcCceEeccCCcccccCCccccccccCcccCCCccccccCcccccccccccccccceeEEEeecccccccccc
Q 042537 544 PFQVCQLSYIQILDLSLNNISGIIPKCLNNFTGMAQKSSSNLAITSNYTFERQGIEFLESYVDNVVLTWKGSQHEYRSTL 623 (789)
Q Consensus 544 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 623 (789)
|..+. ++|++|++++|++++..|..+..+++|
T Consensus 187 ~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L---------------------------------------------- 218 (330)
T 1xku_A 187 PQGLP--PSLTELHLDGNKITKVDAASLKGLNNL---------------------------------------------- 218 (330)
T ss_dssp CSSCC--TTCSEEECTTSCCCEECTGGGTTCTTC----------------------------------------------
T ss_pred Ccccc--ccCCEEECCCCcCCccCHHHhcCCCCC----------------------------------------------
Confidence 32222 455555555555554444444333333
Q ss_pred CceeEEEcccCccccccchhhhccccCcEEEccCCcceeecCcccccCCCCCEEeCCCCcccccCchhhhc------CCC
Q 042537 624 GLVKILDFSMNKLSGTIPEEIMDLVGLVALNLSRNNLTGQITPKIDQLKSLDFLDLSQNQFVGGIPSSLCQ------LSR 697 (789)
Q Consensus 624 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~------l~~ 697 (789)
+.|++++|++++..+..|..+++|++|+|++|+++ .+|..+..+++|++|++++|++++..+..|.. .+.
T Consensus 219 ---~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~ 294 (330)
T 1xku_A 219 ---AKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKAS 294 (330)
T ss_dssp ---CEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCC
T ss_pred ---CEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCccccccccc
Confidence 45555555555444444555555555555555555 44445555555555555555555444444422 244
Q ss_pred CCeEeccCCcc
Q 042537 698 LSVMNLSYNNL 708 (789)
Q Consensus 698 L~~L~ls~N~l 708 (789)
|+.+++++|++
T Consensus 295 l~~l~l~~N~~ 305 (330)
T 1xku_A 295 YSGVSLFSNPV 305 (330)
T ss_dssp CSEEECCSSSS
T ss_pred ccceEeecCcc
Confidence 45555555554
No 49
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.96 E-value=1.2e-28 Score=259.57 Aligned_cols=265 Identities=21% Similarity=0.258 Sum_probs=159.8
Q ss_pred CCEEEccCCcccccCCCCCCCCcEEEcCCCcCccccchhcccCCCCCCEEEcCCCccccCCCcccccCCCCcEEEcCCCc
Q 042537 386 SSSIDISSNYFEGLIPPLPSNASVLNLSRNKFSESISFLCSINGHKLEFLDLSNNILSGRLPDCWMQFDRLAVLSLANNF 465 (789)
Q Consensus 386 L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~ 465 (789)
++.++++++.++..+...+++++.|++++|.+.+..+... ..+++|++|++++|++++..|.+|.++++|++|++++|+
T Consensus 35 l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 113 (332)
T 2ft3_A 35 LRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKDDF-KGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNH 113 (332)
T ss_dssp TTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCEECTTTT-TTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSC
T ss_pred CCEEECCCCCccccCCCCCCCCeEEECCCCcCCccCHhHh-hCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCc
Confidence 4555555555554433334555556666665554433221 122667777777777666666666667777777777776
Q ss_pred CcccCCccccccCcccEEEccCCeeeeeCCcCccCCCCCcEEeCCCCcccc--cCchhhhhcCCCCcEEEcCCCcccccC
Q 042537 466 FSGKIPKSMGFLHSIQTLSLYNNSLIGELPSFFKSCSQLILMDLGKNGLSG--EIPTWIGEGLPKLVVLSLKSNKFHGNI 543 (789)
Q Consensus 466 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~--~~p~~~~~~l~~L~~L~L~~n~l~~~~ 543 (789)
++ .+|..+. ++|++|++++|.+.+..+..|..+++|++|++++|.++. ..+..+. .+ +|+.|++++|++++ +
T Consensus 114 l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~-~l-~L~~L~l~~n~l~~-l 187 (332)
T 2ft3_A 114 LV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFD-GL-KLNYLRISEAKLTG-I 187 (332)
T ss_dssp CC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSC-SC-CCSCCBCCSSBCSS-C
T ss_pred CC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCccccc-CC-ccCEEECcCCCCCc-c
Confidence 66 3343333 566777777777665555556666777777777776642 2232222 34 66666777666664 3
Q ss_pred CCCccCCCcCceEeccCCcccccCCccccccccCcccCCCccccccCcccccccccccccccceeEEEeecccccccccc
Q 042537 544 PFQVCQLSYIQILDLSLNNISGIIPKCLNNFTGMAQKSSSNLAITSNYTFERQGIEFLESYVDNVVLTWKGSQHEYRSTL 623 (789)
Q Consensus 544 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 623 (789)
|..+. ++|++|++++|.+++..+..+..+++|
T Consensus 188 ~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L---------------------------------------------- 219 (332)
T 2ft3_A 188 PKDLP--ETLNELHLDHNKIQAIELEDLLRYSKL---------------------------------------------- 219 (332)
T ss_dssp CSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTC----------------------------------------------
T ss_pred Ccccc--CCCCEEECCCCcCCccCHHHhcCCCCC----------------------------------------------
Confidence 43332 566666666666666555555544444
Q ss_pred CceeEEEcccCccccccchhhhccccCcEEEccCCcceeecCcccccCCCCCEEeCCCCcccccCchhhhcC------CC
Q 042537 624 GLVKILDFSMNKLSGTIPEEIMDLVGLVALNLSRNNLTGQITPKIDQLKSLDFLDLSQNQFVGGIPSSLCQL------SR 697 (789)
Q Consensus 624 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l------~~ 697 (789)
+.|++++|++++..+..|..+++|++|+|++|+++ .+|..+..+++|+.|++++|++++..+..|... +.
T Consensus 220 ---~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~ 295 (332)
T 2ft3_A 220 ---YRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAY 295 (332)
T ss_dssp ---SCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCC
T ss_pred ---CEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHcccccccccccc
Confidence 66677777776666666677777777777777776 566666777777777777777766655555432 45
Q ss_pred CCeEeccCCccc
Q 042537 698 LSVMNLSYNNLS 709 (789)
Q Consensus 698 L~~L~ls~N~l~ 709 (789)
|+.+++++|++.
T Consensus 296 l~~L~l~~N~~~ 307 (332)
T 2ft3_A 296 YNGISLFNNPVP 307 (332)
T ss_dssp BSEEECCSSSSC
T ss_pred ccceEeecCccc
Confidence 667777777665
No 50
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.96 E-value=3.1e-29 Score=260.95 Aligned_cols=251 Identities=22% Similarity=0.242 Sum_probs=202.8
Q ss_pred EEEcCCCcCccccchhcccCCCCCCEEEcCCCccccCCCcccccCCCCcEEEcCCCcCccc--CCccccccCcccEEEcc
Q 042537 409 VLNLSRNKFSESISFLCSINGHKLEFLDLSNNILSGRLPDCWMQFDRLAVLSLANNFFSGK--IPKSMGFLHSIQTLSLY 486 (789)
Q Consensus 409 ~L~l~~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L~L~ 486 (789)
.++.+++.++..+.... +++++|++++|+++...+..|.++++|++|++++|+++.. .+..+..+++|++|+++
T Consensus 11 ~l~c~~~~l~~ip~~~~----~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls 86 (306)
T 2z66_A 11 EIRCNSKGLTSVPTGIP----SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS 86 (306)
T ss_dssp EEECCSSCCSSCCSCCC----TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECC
T ss_pred EEEcCCCCcccCCCCCC----CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECC
Confidence 34444444444333221 5788888888888865556688889999999999988743 25666778899999999
Q ss_pred CCeeeeeCCcCccCCCCCcEEeCCCCcccccCch-hhhhcCCCCcEEEcCCCcccccCCCCccCCCcCceEeccCCcccc
Q 042537 487 NNSLIGELPSFFKSCSQLILMDLGKNGLSGEIPT-WIGEGLPKLVVLSLKSNKFHGNIPFQVCQLSYIQILDLSLNNISG 565 (789)
Q Consensus 487 ~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 565 (789)
+|.+.. +|..+..+++|++|++++|+++ .++. ..+..+++|++|++++|++.+..+..+..+++|++|++++|.+++
T Consensus 87 ~n~i~~-l~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 164 (306)
T 2z66_A 87 FNGVIT-MSSNFLGLEQLEHLDFQHSNLK-QMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQE 164 (306)
T ss_dssp SCSEEE-EEEEEETCTTCCEEECTTSEEE-SSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGG
T ss_pred CCcccc-ChhhcCCCCCCCEEECCCCccc-ccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCcccc
Confidence 999884 5566888999999999999998 4443 344478999999999999988888888899999999999999886
Q ss_pred -cCCccccccccCcccCCCccccccCcccccccccccccccceeEEEeeccccccccccCceeEEEcccCccccccchhh
Q 042537 566 -IIPKCLNNFTGMAQKSSSNLAITSNYTFERQGIEFLESYVDNVVLTWKGSQHEYRSTLGLVKILDFSMNKLSGTIPEEI 644 (789)
Q Consensus 566 -~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~ 644 (789)
..|..+..+++| +.|++++|++++..|..|
T Consensus 165 ~~~~~~~~~l~~L-------------------------------------------------~~L~Ls~n~l~~~~~~~~ 195 (306)
T 2z66_A 165 NFLPDIFTELRNL-------------------------------------------------TFLDLSQCQLEQLSPTAF 195 (306)
T ss_dssp GEECSCCTTCTTC-------------------------------------------------CEEECTTSCCCEECTTTT
T ss_pred ccchhHHhhCcCC-------------------------------------------------CEEECCCCCcCCcCHHHh
Confidence 456666555555 899999999998888899
Q ss_pred hccccCcEEEccCCcceeecCcccccCCCCCEEeCCCCcccccCchhhhcCC-CCCeEeccCCcccccCCC
Q 042537 645 MDLVGLVALNLSRNNLTGQITPKIDQLKSLDFLDLSQNQFVGGIPSSLCQLS-RLSVMNLSYNNLSGKIPL 714 (789)
Q Consensus 645 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~-~L~~L~ls~N~l~~~~p~ 714 (789)
..+++|++|+|++|++++..+..+..+++|+.|||++|++++..|..+..++ +|++|++++|++.|.++.
T Consensus 196 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~ 266 (306)
T 2z66_A 196 NSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEH 266 (306)
T ss_dssp TTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGG
T ss_pred cCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccCh
Confidence 9999999999999999987777889999999999999999999999998884 899999999999887654
No 51
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.96 E-value=4.6e-28 Score=266.50 Aligned_cols=233 Identities=23% Similarity=0.231 Sum_probs=197.3
Q ss_pred CCCCEEEcCCCccccCCCcccccCCCCcEEEcCCCcCcccCCccccccCcccEEEccCCeeeeeCCcCccCCCCCcEEeC
Q 042537 430 HKLEFLDLSNNILSGRLPDCWMQFDRLAVLSLANNFFSGKIPKSMGFLHSIQTLSLYNNSLIGELPSFFKSCSQLILMDL 509 (789)
Q Consensus 430 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 509 (789)
+++++|++++|++++..+..|.++++|+.|++++|++++..+..|..+++|++|++++|++++..+..|..+++|++|++
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 154 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWL 154 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEEC
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEEC
Confidence 57888888888888878888888899999999999988888888888889999999999988777777888899999999
Q ss_pred CCCcccccCchhhhhcCCCCcEEEcCC-CcccccCCCCccCCCcCceEeccCCcccccCCccccccccCcccCCCccccc
Q 042537 510 GKNGLSGEIPTWIGEGLPKLVVLSLKS-NKFHGNIPFQVCQLSYIQILDLSLNNISGIIPKCLNNFTGMAQKSSSNLAIT 588 (789)
Q Consensus 510 s~n~l~~~~p~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~ 588 (789)
++|++. .+|...+..+++|+.|++++ |.+....+..+.++++|++|++++|++++. | .+..+
T Consensus 155 ~~N~l~-~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~-~~~~l-------------- 217 (452)
T 3zyi_A 155 RNNPIE-SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM-P-NLTPL-------------- 217 (452)
T ss_dssp CSCCCC-EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-C-CCTTC--------------
T ss_pred CCCCcc-eeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc-c-ccccc--------------
Confidence 999988 67766666788999999988 455544455688899999999999988754 2 23333
Q ss_pred cCcccccccccccccccceeEEEeeccccccccccCceeEEEcccCccccccchhhhccccCcEEEccCCcceeecCccc
Q 042537 589 SNYTFERQGIEFLESYVDNVVLTWKGSQHEYRSTLGLVKILDFSMNKLSGTIPEEIMDLVGLVALNLSRNNLTGQITPKI 668 (789)
Q Consensus 589 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~ 668 (789)
++|+.|++++|++++..|..|.++++|+.|+|++|++++..|..|
T Consensus 218 -----------------------------------~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 262 (452)
T 3zyi_A 218 -----------------------------------VGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAF 262 (452)
T ss_dssp -----------------------------------TTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTT
T ss_pred -----------------------------------ccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHh
Confidence 345899999999998889999999999999999999998889999
Q ss_pred ccCCCCCEEeCCCCcccccCchhhhcCCCCCeEeccCCcccccCCC
Q 042537 669 DQLKSLDFLDLSQNQFVGGIPSSLCQLSRLSVMNLSYNNLSGKIPL 714 (789)
Q Consensus 669 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~ 714 (789)
..+++|+.|+|++|++++..+..|..+++|+.|++++|++.+.+..
T Consensus 263 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~~ 308 (452)
T 3zyi_A 263 DGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDCDI 308 (452)
T ss_dssp TTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECSTTT
T ss_pred cCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCCCCc
Confidence 9999999999999999988888889999999999999999877653
No 52
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.96 E-value=4.6e-29 Score=265.15 Aligned_cols=278 Identities=18% Similarity=0.168 Sum_probs=212.2
Q ss_pred CCEEEccCCcccccCCCCCCCCcEEEcCCCcCccccchhcccCCCCCCEEEcCCCccccCCCcccccCCCCcEEEcCCCc
Q 042537 386 SSSIDISSNYFEGLIPPLPSNASVLNLSRNKFSESISFLCSINGHKLEFLDLSNNILSGRLPDCWMQFDRLAVLSLANNF 465 (789)
Q Consensus 386 L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~ 465 (789)
....+++++.++..+...+++++.|++++|++++..+... ..+++|++|++++|.+++..+..|.++++|++|++++|+
T Consensus 33 ~~~c~~~~~~l~~iP~~~~~~L~~L~l~~n~i~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 111 (353)
T 2z80_A 33 NGICKGSSGSLNSIPSGLTEAVKSLDLSNNRITYISNSDL-QRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNY 111 (353)
T ss_dssp TSEEECCSTTCSSCCTTCCTTCCEEECTTSCCCEECTTTT-TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CeEeeCCCCCcccccccccccCcEEECCCCcCcccCHHHh-ccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCc
Confidence 4456677777776655556778888888888776554222 223788899999998887778888888899999999998
Q ss_pred CcccCCccccccCcccEEEccCCeeeeeCC-cCccCCCCCcEEeCCCCc-ccccCchhhhhcCCCCcEEEcCCCcccccC
Q 042537 466 FSGKIPKSMGFLHSIQTLSLYNNSLIGELP-SFFKSCSQLILMDLGKNG-LSGEIPTWIGEGLPKLVVLSLKSNKFHGNI 543 (789)
Q Consensus 466 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~ls~n~-l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~ 543 (789)
+++..+..|..+++|++|++++|++++..+ ..|..+++|++|++++|. +. .++...+.++++|++|++++|++.+..
T Consensus 112 l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~-~~~~~~~~~l~~L~~L~l~~n~l~~~~ 190 (353)
T 2z80_A 112 LSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFT-KIQRKDFAGLTFLEELEIDASDLQSYE 190 (353)
T ss_dssp CSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCC-EECTTTTTTCCEEEEEEEEETTCCEEC
T ss_pred CCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCcccc-ccCHHHccCCCCCCEEECCCCCcCccC
Confidence 886655558888889999999998885544 478888899999998884 55 554444447888999999999888888
Q ss_pred CCCccCCCcCceEeccCCcccccCCccccccccCcccCCCccccccCcccccccccccccccceeEEEeecccccccccc
Q 042537 544 PFQVCQLSYIQILDLSLNNISGIIPKCLNNFTGMAQKSSSNLAITSNYTFERQGIEFLESYVDNVVLTWKGSQHEYRSTL 623 (789)
Q Consensus 544 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 623 (789)
|..+..+++|++|++++|.+....+..+.. +
T Consensus 191 ~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~-------------------------------------------------~ 221 (353)
T 2z80_A 191 PKSLKSIQNVSHLILHMKQHILLLEIFVDV-------------------------------------------------T 221 (353)
T ss_dssp TTTTTTCSEEEEEEEECSCSTTHHHHHHHH-------------------------------------------------T
T ss_pred HHHHhccccCCeecCCCCccccchhhhhhh-------------------------------------------------c
Confidence 888888889999999888876332222222 3
Q ss_pred CceeEEEcccCccccccchhhh---ccccCcEEEccCCccee----ecCcccccCCCCCEEeCCCCcccccCchhhhcCC
Q 042537 624 GLVKILDFSMNKLSGTIPEEIM---DLVGLVALNLSRNNLTG----QITPKIDQLKSLDFLDLSQNQFVGGIPSSLCQLS 696 (789)
Q Consensus 624 ~~L~~L~Ls~N~l~~~~p~~~~---~l~~L~~L~Ls~N~l~~----~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~ 696 (789)
+.|+.|++++|++++..+..+. ....++.++|+++.+++ .+|..+..+++|+.|++++|+++...+..|..++
T Consensus 222 ~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~ 301 (353)
T 2z80_A 222 SSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLT 301 (353)
T ss_dssp TTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred ccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCC
Confidence 4559999999999876555443 35678888888888876 3678889999999999999999954444468999
Q ss_pred CCCeEeccCCcccccCCC
Q 042537 697 RLSVMNLSYNNLSGKIPL 714 (789)
Q Consensus 697 ~L~~L~ls~N~l~~~~p~ 714 (789)
+|++|++++|++.|.+|.
T Consensus 302 ~L~~L~L~~N~~~~~~~~ 319 (353)
T 2z80_A 302 SLQKIWLHTNPWDCSCPR 319 (353)
T ss_dssp TCCEEECCSSCBCCCHHH
T ss_pred CCCEEEeeCCCccCcCCC
Confidence 999999999999998874
No 53
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.96 E-value=8.8e-28 Score=263.23 Aligned_cols=233 Identities=23% Similarity=0.242 Sum_probs=191.4
Q ss_pred CCCCEEEcCCCccccCCCcccccCCCCcEEEcCCCcCcccCCccccccCcccEEEccCCeeeeeCCcCccCCCCCcEEeC
Q 042537 430 HKLEFLDLSNNILSGRLPDCWMQFDRLAVLSLANNFFSGKIPKSMGFLHSIQTLSLYNNSLIGELPSFFKSCSQLILMDL 509 (789)
Q Consensus 430 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 509 (789)
++++.|++++|++++..+..|.++++|++|+|++|++++..+..|..+++|++|++++|+++...+..|..+++|++|++
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 143 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWL 143 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEEC
T ss_pred CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeC
Confidence 56778888888888777788888888888888888888777788888888888888888888777777888888888888
Q ss_pred CCCcccccCchhhhhcCCCCcEEEcCCC-cccccCCCCccCCCcCceEeccCCcccccCCccccccccCcccCCCccccc
Q 042537 510 GKNGLSGEIPTWIGEGLPKLVVLSLKSN-KFHGNIPFQVCQLSYIQILDLSLNNISGIIPKCLNNFTGMAQKSSSNLAIT 588 (789)
Q Consensus 510 s~n~l~~~~p~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~ 588 (789)
++|++. .++...+..+++|++|++++| .+....+..|.++++|++|++++|+++.. | .+..
T Consensus 144 ~~N~i~-~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~-~~~~--------------- 205 (440)
T 3zyj_A 144 RNNPIE-SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREI-P-NLTP--------------- 205 (440)
T ss_dssp CSCCCC-EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSC-C-CCTT---------------
T ss_pred CCCccc-ccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccc-c-ccCC---------------
Confidence 888887 666655557888888888884 45544455788888899999999888743 3 2333
Q ss_pred cCcccccccccccccccceeEEEeeccccccccccCceeEEEcccCccccccchhhhccccCcEEEccCCcceeecCccc
Q 042537 589 SNYTFERQGIEFLESYVDNVVLTWKGSQHEYRSTLGLVKILDFSMNKLSGTIPEEIMDLVGLVALNLSRNNLTGQITPKI 668 (789)
Q Consensus 589 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~ 668 (789)
++.|+.|++++|++++..|..|.++++|+.|+|++|++++..+..|
T Consensus 206 ----------------------------------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 251 (440)
T 3zyj_A 206 ----------------------------------LIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAF 251 (440)
T ss_dssp ----------------------------------CSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSS
T ss_pred ----------------------------------CcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhh
Confidence 3345899999999998888999999999999999999998888899
Q ss_pred ccCCCCCEEeCCCCcccccCchhhhcCCCCCeEeccCCcccccCCC
Q 042537 669 DQLKSLDFLDLSQNQFVGGIPSSLCQLSRLSVMNLSYNNLSGKIPL 714 (789)
Q Consensus 669 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~ 714 (789)
..+++|+.|+|++|++++..+..|..+++|+.|++++|++.+.+..
T Consensus 252 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~l 297 (440)
T 3zyj_A 252 DNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNCDI 297 (440)
T ss_dssp TTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEECSSTT
T ss_pred cCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccCCCCc
Confidence 9999999999999999988888889999999999999999876653
No 54
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.96 E-value=3.5e-28 Score=250.11 Aligned_cols=250 Identities=19% Similarity=0.109 Sum_probs=190.1
Q ss_pred CEEEcCCCccccCCCcccccCCCCcEEEcCCCcCcccCCccccccCcccEEEccCCeeeeeCCcCccCCCCCcEEeCCCC
Q 042537 433 EFLDLSNNILSGRLPDCWMQFDRLAVLSLANNFFSGKIPKSMGFLHSIQTLSLYNNSLIGELPSFFKSCSQLILMDLGKN 512 (789)
Q Consensus 433 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n 512 (789)
+.++.+++.++ .+|..+ .++|+.|++++|.+++..+..|..+++|++|++++|.+++..+..|..+++|++|++++|
T Consensus 14 ~~~~c~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 14 VTTSCPQQGLQ-AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp CEEECCSSCCS-SCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred eEEEcCcCCcc-cCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence 56777777776 444433 357788888888888777677778888888888888888777778888888888888888
Q ss_pred c-ccccCchhhhhcCCCCcEEEcCCCcccccCCCCccCCCcCceEeccCCcccccCCccccccccCcccCCCccccccCc
Q 042537 513 G-LSGEIPTWIGEGLPKLVVLSLKSNKFHGNIPFQVCQLSYIQILDLSLNNISGIIPKCLNNFTGMAQKSSSNLAITSNY 591 (789)
Q Consensus 513 ~-l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~ 591 (789)
. +. .++...+..+++|++|++++|++++..+..+.++++|++|++++|++++..+..|..+++|
T Consensus 91 ~~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L-------------- 155 (285)
T 1ozn_A 91 AQLR-SVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNL-------------- 155 (285)
T ss_dssp TTCC-CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC--------------
T ss_pred CCcc-ccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCc--------------
Confidence 6 65 5533333468888888888888887777778888888888888888887666656555555
Q ss_pred ccccccccccccccceeEEEeeccccccccccCceeEEEcccCccccccchhhhccccCcEEEccCCcceeecCcccccC
Q 042537 592 TFERQGIEFLESYVDNVVLTWKGSQHEYRSTLGLVKILDFSMNKLSGTIPEEIMDLVGLVALNLSRNNLTGQITPKIDQL 671 (789)
Q Consensus 592 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l 671 (789)
+.|++++|++++..+..|..+++|++|++++|++++..|..+..+
T Consensus 156 -----------------------------------~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 200 (285)
T 1ozn_A 156 -----------------------------------THLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDL 200 (285)
T ss_dssp -----------------------------------CEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTC
T ss_pred -----------------------------------cEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCc
Confidence 888888888886666678889999999999999998888889999
Q ss_pred CCCCEEeCCCCcccccCchhhhcCCCCCeEeccCCcccccCCCCCccccccccccCCCCCCCCC
Q 042537 672 KSLDFLDLSQNQFVGGIPSSLCQLSRLSVMNLSYNNLSGKIPLGTQLQSFNASVYAGNPELCGL 735 (789)
Q Consensus 672 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~n~~lc~~ 735 (789)
++|+.|++++|++++..+..+..+++|++|++++|++.+.++....+..+.......+...|..
T Consensus 201 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~~~~~~l~~~~~~~~~~~c~~ 264 (285)
T 1ozn_A 201 GRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVPCSL 264 (285)
T ss_dssp TTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGHHHHHHHHHCCSEECCCBEEE
T ss_pred ccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcHHHHHHHHhcccccCccccCC
Confidence 9999999999999987778888999999999999999887775433333333333445455543
No 55
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.95 E-value=4.8e-28 Score=251.98 Aligned_cols=276 Identities=23% Similarity=0.256 Sum_probs=225.2
Q ss_pred CEEEccCCcccccCCCCCCCCcEEEcCCCcCccccchhcccCCCCCCEEEcCCCccccC--CCcccccCCCCcEEEcCCC
Q 042537 387 SSIDISSNYFEGLIPPLPSNASVLNLSRNKFSESISFLCSINGHKLEFLDLSNNILSGR--LPDCWMQFDRLAVLSLANN 464 (789)
Q Consensus 387 ~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~--~~~~~~~l~~L~~L~L~~n 464 (789)
+.++++++.++..+...+++++.|++++|++....+..+ ..+++|++|++++|.++.. .+..+..+++|++|++++|
T Consensus 10 ~~l~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~i~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n 88 (306)
T 2z66_A 10 TEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVF-DKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN 88 (306)
T ss_dssp TEEECCSSCCSSCCSCCCTTCCEEECCSSCCCCCCTTTT-TTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSC
T ss_pred CEEEcCCCCcccCCCCCCCCCCEEECCCCccCccCHhHh-hccccCCEEECCCCccCcccCcccccccccccCEEECCCC
Confidence 456666666666655566788888888888876554332 2338899999999998743 3667778999999999999
Q ss_pred cCcccCCccccccCcccEEEccCCeeeeeCC-cCccCCCCCcEEeCCCCcccccCchhhhhcCCCCcEEEcCCCcccc-c
Q 042537 465 FFSGKIPKSMGFLHSIQTLSLYNNSLIGELP-SFFKSCSQLILMDLGKNGLSGEIPTWIGEGLPKLVVLSLKSNKFHG-N 542 (789)
Q Consensus 465 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~-~ 542 (789)
.+. .+|..+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+.+..+..+. .+++|++|++++|.+.+ .
T Consensus 89 ~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~ 166 (306)
T 2z66_A 89 GVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFN-GLSSLEVLKMAGNSFQENF 166 (306)
T ss_dssp SEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTT-TCTTCCEEECTTCEEGGGE
T ss_pred ccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcc-cCcCCCEEECCCCcccccc
Confidence 998 466678899999999999999987665 6789999999999999999866655554 78999999999999987 5
Q ss_pred CCCCccCCCcCceEeccCCcccccCCccccccccCcccCCCccccccCcccccccccccccccceeEEEeeccccccccc
Q 042537 543 IPFQVCQLSYIQILDLSLNNISGIIPKCLNNFTGMAQKSSSNLAITSNYTFERQGIEFLESYVDNVVLTWKGSQHEYRST 622 (789)
Q Consensus 543 ~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 622 (789)
.|..+..+++|++|++++|++++..|..+..+++|
T Consensus 167 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L--------------------------------------------- 201 (306)
T 2z66_A 167 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSL--------------------------------------------- 201 (306)
T ss_dssp ECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTC---------------------------------------------
T ss_pred chhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCC---------------------------------------------
Confidence 78899999999999999999998888777766655
Q ss_pred cCceeEEEcccCccccccchhhhccccCcEEEccCCcceeecCcccccCC-CCCEEeCCCCcccccCc--hhhhcCCCCC
Q 042537 623 LGLVKILDFSMNKLSGTIPEEIMDLVGLVALNLSRNNLTGQITPKIDQLK-SLDFLDLSQNQFVGGIP--SSLCQLSRLS 699 (789)
Q Consensus 623 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~-~L~~L~Ls~N~l~~~~p--~~l~~l~~L~ 699 (789)
+.|++++|++++..+..+..+++|++|+|++|++++..|..+..++ +|+.|+|++|.+++..+ .....+...+
T Consensus 202 ----~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~ 277 (306)
T 2z66_A 202 ----QVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQR 277 (306)
T ss_dssp ----CEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGGHHHHHHHHHTG
T ss_pred ----CEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccChHHHHHHHHhhh
Confidence 8999999999988888899999999999999999999999999984 99999999999986532 2223344555
Q ss_pred eEeccCCcccccCCC
Q 042537 700 VMNLSYNNLSGKIPL 714 (789)
Q Consensus 700 ~L~ls~N~l~~~~p~ 714 (789)
.+.+..+.+.|..|.
T Consensus 278 ~~~~~~~~~~C~~p~ 292 (306)
T 2z66_A 278 QLLVEVERMECATPS 292 (306)
T ss_dssp GGBSCGGGCBEEESG
T ss_pred hhhccccccccCCch
Confidence 667777888877774
No 56
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.95 E-value=3.2e-28 Score=258.67 Aligned_cols=277 Identities=21% Similarity=0.209 Sum_probs=233.0
Q ss_pred CCCcEEEcCCCcCccccchhcccCCCCCCEEEcCCCccccCCCcccccCCCCcEEEcCCCcCcccCCccccccCcccEEE
Q 042537 405 SNASVLNLSRNKFSESISFLCSINGHKLEFLDLSNNILSGRLPDCWMQFDRLAVLSLANNFFSGKIPKSMGFLHSIQTLS 484 (789)
Q Consensus 405 ~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 484 (789)
+.....+.+++.++..+.... ++|++|++++|.+++..+..|.++++|++|++++|++++..+..|..+++|++|+
T Consensus 31 ~~~~~c~~~~~~l~~iP~~~~----~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (353)
T 2z80_A 31 DRNGICKGSSGSLNSIPSGLT----EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLD 106 (353)
T ss_dssp CTTSEEECCSTTCSSCCTTCC----TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred CCCeEeeCCCCCccccccccc----ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEE
Confidence 344568889998888765433 6899999999999987777899999999999999999988888999999999999
Q ss_pred ccCCeeeeeCCcCccCCCCCcEEeCCCCcccccCch-hhhhcCCCCcEEEcCCC-cccccCCCCccCCCcCceEeccCCc
Q 042537 485 LYNNSLIGELPSFFKSCSQLILMDLGKNGLSGEIPT-WIGEGLPKLVVLSLKSN-KFHGNIPFQVCQLSYIQILDLSLNN 562 (789)
Q Consensus 485 L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~-~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~N~ 562 (789)
+++|++++..+..|.++++|++|++++|+++ .+|. ..+..+++|++|++++| .+.+..+..+.++++|++|++++|.
T Consensus 107 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~ 185 (353)
T 2z80_A 107 LSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASD 185 (353)
T ss_dssp CCSSCCSSCCHHHHTTCTTCSEEECTTCCCS-SSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETT
T ss_pred CCCCcCCcCCHhHhCCCccCCEEECCCCCCc-ccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCC
Confidence 9999999766666899999999999999998 7776 44557999999999999 5777777889999999999999999
Q ss_pred ccccCCccccccccCcccCCCccccccCcccccccccccccccceeEEEeeccccccccccCceeEEEcccCccccccch
Q 042537 563 ISGIIPKCLNNFTGMAQKSSSNLAITSNYTFERQGIEFLESYVDNVVLTWKGSQHEYRSTLGLVKILDFSMNKLSGTIPE 642 (789)
Q Consensus 563 l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~ 642 (789)
+++..|..+..+++| +.|++++|+++...+.
T Consensus 186 l~~~~~~~l~~l~~L-------------------------------------------------~~L~l~~n~l~~~~~~ 216 (353)
T 2z80_A 186 LQSYEPKSLKSIQNV-------------------------------------------------SHLILHMKQHILLLEI 216 (353)
T ss_dssp CCEECTTTTTTCSEE-------------------------------------------------EEEEEECSCSTTHHHH
T ss_pred cCccCHHHHhccccC-------------------------------------------------CeecCCCCccccchhh
Confidence 998888777666555 9999999999854444
Q ss_pred hhhccccCcEEEccCCcceeecCcccc---cCCCCCEEeCCCCcccc----cCchhhhcCCCCCeEeccCCcccccCCCC
Q 042537 643 EIMDLVGLVALNLSRNNLTGQITPKID---QLKSLDFLDLSQNQFVG----GIPSSLCQLSRLSVMNLSYNNLSGKIPLG 715 (789)
Q Consensus 643 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~---~l~~L~~L~Ls~N~l~~----~~p~~l~~l~~L~~L~ls~N~l~~~~p~~ 715 (789)
.+..+++|++|++++|++++..+..+. ....++.++|++|.+++ .+|..+..+++|++|++++|+++ .+|..
T Consensus 217 ~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~ 295 (353)
T 2z80_A 217 FVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDG 295 (353)
T ss_dssp HHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTT
T ss_pred hhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHH
Confidence 556789999999999999976655443 46789999999999886 47888999999999999999998 66764
Q ss_pred --CccccccccccCCCCCCCCCC
Q 042537 716 --TQLQSFNASVYAGNPELCGLP 736 (789)
Q Consensus 716 --~~~~~~~~~~~~~n~~lc~~~ 736 (789)
..+..+....+.+||+.|+|+
T Consensus 296 ~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 296 IFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp TTTTCTTCCEEECCSSCBCCCHH
T ss_pred HHhcCCCCCEEEeeCCCccCcCC
Confidence 456677778899999999886
No 57
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.95 E-value=1.9e-27 Score=260.60 Aligned_cols=253 Identities=23% Similarity=0.224 Sum_probs=220.2
Q ss_pred CCCCEEEcCCCccccCCCcccccCCCCcEEEcCCCcCcccCCccccccCcccEEEccCCeeeeeCCcCccCCCCCcEEeC
Q 042537 430 HKLEFLDLSNNILSGRLPDCWMQFDRLAVLSLANNFFSGKIPKSMGFLHSIQTLSLYNNSLIGELPSFFKSCSQLILMDL 509 (789)
Q Consensus 430 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 509 (789)
.....++.++..++ .+|..+. ++++.|+|++|++++..+..|..+++|++|++++|.+.++.+..|.++++|++|++
T Consensus 43 ~~~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L 119 (440)
T 3zyj_A 43 NQFSKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLEL 119 (440)
T ss_dssp TTSCEEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEEC
T ss_pred CCCCEEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEEC
Confidence 34667888888887 5666554 68999999999999998899999999999999999999998899999999999999
Q ss_pred CCCcccccCchhhhhcCCCCcEEEcCCCcccccCCCCccCCCcCceEeccCCc-ccccCCccccccccCcccCCCccccc
Q 042537 510 GKNGLSGEIPTWIGEGLPKLVVLSLKSNKFHGNIPFQVCQLSYIQILDLSLNN-ISGIIPKCLNNFTGMAQKSSSNLAIT 588 (789)
Q Consensus 510 s~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~p~~~~~l~~L~~l~~~~~~~~ 588 (789)
++|+++ .+|...+..+++|++|++++|++....+..|..+++|+.|++++|+ +....+..|.++++|
T Consensus 120 ~~n~l~-~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L----------- 187 (440)
T 3zyj_A 120 FDNRLT-TIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNL----------- 187 (440)
T ss_dssp CSSCCS-SCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSC-----------
T ss_pred CCCcCC-eeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhccccc-----------
Confidence 999999 7777656689999999999999998888889999999999999954 544444456555544
Q ss_pred cCcccccccccccccccceeEEEeeccccccccccCceeEEEcccCccccccchhhhccccCcEEEccCCcceeecCccc
Q 042537 589 SNYTFERQGIEFLESYVDNVVLTWKGSQHEYRSTLGLVKILDFSMNKLSGTIPEEIMDLVGLVALNLSRNNLTGQITPKI 668 (789)
Q Consensus 589 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~ 668 (789)
+.|++++|+++ .+| .+..+++|++|+|++|++++..|..|
T Consensus 188 --------------------------------------~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~ 227 (440)
T 3zyj_A 188 --------------------------------------RYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSAIRPGSF 227 (440)
T ss_dssp --------------------------------------CEEECTTSCCS-SCC-CCTTCSSCCEEECTTSCCCEECTTTT
T ss_pred --------------------------------------CeecCCCCcCc-ccc-ccCCCcccCEEECCCCccCccChhhh
Confidence 99999999999 566 48899999999999999999889999
Q ss_pred ccCCCCCEEeCCCCcccccCchhhhcCCCCCeEeccCCcccccCCCC-CccccccccccCCCCCCCCCCC
Q 042537 669 DQLKSLDFLDLSQNQFVGGIPSSLCQLSRLSVMNLSYNNLSGKIPLG-TQLQSFNASVYAGNPELCGLPL 737 (789)
Q Consensus 669 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~-~~~~~~~~~~~~~n~~lc~~~l 737 (789)
..+++|+.|+|++|++++..|..|..+++|++|++++|++++..+.. ..+..+....+.+||+.|+|.+
T Consensus 228 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~l 297 (440)
T 3zyj_A 228 QGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNCDI 297 (440)
T ss_dssp TTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEECSSTT
T ss_pred ccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccCCCCc
Confidence 99999999999999999999999999999999999999999655543 3456677778999999999864
No 58
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.95 E-value=2.4e-27 Score=260.78 Aligned_cols=252 Identities=23% Similarity=0.218 Sum_probs=219.3
Q ss_pred CCCEEEcCCCccccCCCcccccCCCCcEEEcCCCcCcccCCccccccCcccEEEccCCeeeeeCCcCccCCCCCcEEeCC
Q 042537 431 KLEFLDLSNNILSGRLPDCWMQFDRLAVLSLANNFFSGKIPKSMGFLHSIQTLSLYNNSLIGELPSFFKSCSQLILMDLG 510 (789)
Q Consensus 431 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls 510 (789)
....++.++..++ .+|..+. ++++.|++++|++++..+..|..+++|++|++++|.+.++.+..|.++++|++|+++
T Consensus 55 ~~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~ 131 (452)
T 3zyi_A 55 QFSKVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELF 131 (452)
T ss_dssp SSCEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCcEEEECCCCcC-ccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECC
Confidence 4567888888887 5665554 689999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccccCchhhhhcCCCCcEEEcCCCcccccCCCCccCCCcCceEeccCC-cccccCCccccccccCcccCCCcccccc
Q 042537 511 KNGLSGEIPTWIGEGLPKLVVLSLKSNKFHGNIPFQVCQLSYIQILDLSLN-NISGIIPKCLNNFTGMAQKSSSNLAITS 589 (789)
Q Consensus 511 ~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~p~~~~~l~~L~~l~~~~~~~~~ 589 (789)
+|+++ .+|...+..+++|++|++++|++....+..+.++++|+.|++++| .+....+..|..+++|
T Consensus 132 ~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L------------ 198 (452)
T 3zyi_A 132 DNWLT-VIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNL------------ 198 (452)
T ss_dssp SSCCS-BCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTC------------
T ss_pred CCcCC-ccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCC------------
Confidence 99999 777766668999999999999999888888999999999999995 4544444455555444
Q ss_pred CcccccccccccccccceeEEEeeccccccccccCceeEEEcccCccccccchhhhccccCcEEEccCCcceeecCcccc
Q 042537 590 NYTFERQGIEFLESYVDNVVLTWKGSQHEYRSTLGLVKILDFSMNKLSGTIPEEIMDLVGLVALNLSRNNLTGQITPKID 669 (789)
Q Consensus 590 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~ 669 (789)
+.|++++|++++ +| .+..+++|++|+|++|++++..|..|.
T Consensus 199 -------------------------------------~~L~L~~n~l~~-~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 239 (452)
T 3zyi_A 199 -------------------------------------KYLNLGMCNIKD-MP-NLTPLVGLEELEMSGNHFPEIRPGSFH 239 (452)
T ss_dssp -------------------------------------CEEECTTSCCSS-CC-CCTTCTTCCEEECTTSCCSEECGGGGT
T ss_pred -------------------------------------CEEECCCCcccc-cc-cccccccccEEECcCCcCcccCccccc
Confidence 999999999995 45 488999999999999999999999999
Q ss_pred cCCCCCEEeCCCCcccccCchhhhcCCCCCeEeccCCcccccCCCC-CccccccccccCCCCCCCCCCC
Q 042537 670 QLKSLDFLDLSQNQFVGGIPSSLCQLSRLSVMNLSYNNLSGKIPLG-TQLQSFNASVYAGNPELCGLPL 737 (789)
Q Consensus 670 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~-~~~~~~~~~~~~~n~~lc~~~l 737 (789)
.+++|+.|+|++|++++..|..|..+++|++|++++|++++..+.. ..+..+....+.+||+.|+|.+
T Consensus 240 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~~ 308 (452)
T 3zyi_A 240 GLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDCDI 308 (452)
T ss_dssp TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECSTTT
T ss_pred CccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCCCCc
Confidence 9999999999999999999999999999999999999999655543 3456677778999999999874
No 59
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.95 E-value=3.3e-30 Score=294.95 Aligned_cols=189 Identities=17% Similarity=0.164 Sum_probs=97.2
Q ss_pred CCceeeeEecCCCCcEEEEEcCCCCCCCCcccccCccccCCCCCCEEeCCCCCCC---CCCCcccc------------cC
Q 042537 34 CCYWRGVRCSNTTGHVIVLDLQVLVHSEPLKGTISPSLLKLYHLRHLDLSENDFS---GSRIPEFI------------GS 98 (789)
Q Consensus 34 ~c~w~gv~c~~~~~~v~~l~L~~~~~~~~l~~~l~~~~~~l~~L~~L~Ls~n~i~---~~~~~~~~------------~~ 98 (789)
|++|.++.+. .. ..+.+.. ......+..+.++++|++|+++++... +. +|..+ ..
T Consensus 41 ck~W~~~~~~--~~--~~l~~~~-----~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~-~~~~~~~~~~~~l~~l~~~ 110 (592)
T 3ogk_B 41 CRRWFKIDSE--TR--EHVTMAL-----CYTATPDRLSRRFPNLRSLKLKGKPRAAMFNL-IPENWGGYVTPWVTEISNN 110 (592)
T ss_dssp CHHHHHHHHH--HC--CEEEESC-----GGGSCHHHHHHHCTTCSEEEEECSCGGGGGTC-SCTTSCCBCHHHHHHHHHH
T ss_pred hHHHHHhhhc--cc--cEEEEee-----ccccChHHHHHhCCCCeEEEecCCcchhhccc-ccccccccchHHHHHHHhh
Confidence 5589988543 11 2333333 222333455678889999999875321 11 22111 26
Q ss_pred CCCCCEEecCCCcCCCCCCccccCC--CCCcEEeccCccCCCCcchHHhhCCCCCCCEEEcCCCCCCCCcccc--ccccc
Q 042537 99 LNKLRYLSLSSAEFEGPIPSQLGNL--SRLKYLDLSYINLNKSRDWLRIIDKLPSLRTLNLEHCHLPPIIPSD--LLHLN 174 (789)
Q Consensus 99 l~~L~~L~Ls~n~i~~~~p~~~~~l--~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~--~~~~~ 174 (789)
+++|++|+|++|.+++..+..+... .+|++|+|++|.-.....++....++++|++|++++|.+.+..... .....
T Consensus 111 ~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~ 190 (592)
T 3ogk_B 111 LRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQH 190 (592)
T ss_dssp CTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHH
T ss_pred CCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhc
Confidence 7788888888877765555555543 3477888777752222224444556777777777777654331100 01112
Q ss_pred cCCCCCCeEEccCCCCCCCchh---HHHhhcCCCcEEEccCCCCcccCchhhhcCCCCcEEECC
Q 042537 175 FSTSSLGALYLFENSLSSSIYP---WLFNISSKLVVLDLDSNLLQGSLLEPFDRMVSLRTLYLG 235 (789)
Q Consensus 175 l~~~~L~~L~l~~n~l~~~~~~---~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~ 235 (789)
+ ++|++|++++|.+++.-.. .++...++|++|++++|.+.+ .+..+..+++|+.|+++
T Consensus 191 ~--~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~ 251 (592)
T 3ogk_B 191 N--TSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGG 251 (592)
T ss_dssp C--CCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEEC
T ss_pred C--CCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhccc
Confidence 2 5555555555555421111 112222355555555555443 33445555555555554
No 60
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.95 E-value=8.5e-28 Score=251.60 Aligned_cols=226 Identities=19% Similarity=0.250 Sum_probs=195.1
Q ss_pred CCCCEEEcCCCccccCCCcccccCCCCcEEEcCCCcCcccCCccccccCcccEEEccCCeeeeeCCcCccCCCCCcEEeC
Q 042537 430 HKLEFLDLSNNILSGRLPDCWMQFDRLAVLSLANNFFSGKIPKSMGFLHSIQTLSLYNNSLIGELPSFFKSCSQLILMDL 509 (789)
Q Consensus 430 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 509 (789)
+.++.|++++|.++ .+|..+.++++|++|++++|.++ .+|..+..+++|++|++++|.++ .+|..+..+++|++|++
T Consensus 81 ~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L 157 (328)
T 4fcg_A 81 PGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSI 157 (328)
T ss_dssp TTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEE
T ss_pred cceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEEC
Confidence 67888999999888 67777888899999999999988 77888888999999999999888 67888888999999999
Q ss_pred CCCcccccCchhhh--------hcCCCCcEEEcCCCcccccCCCCccCCCcCceEeccCCcccccCCccccccccCcccC
Q 042537 510 GKNGLSGEIPTWIG--------EGLPKLVVLSLKSNKFHGNIPFQVCQLSYIQILDLSLNNISGIIPKCLNNFTGMAQKS 581 (789)
Q Consensus 510 s~n~l~~~~p~~~~--------~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~ 581 (789)
++|++.+.+|..+. .++++|++|++++|+++ .+|..+..+++|++|++++|++++ +|..+..+++|
T Consensus 158 ~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L---- 231 (328)
T 4fcg_A 158 RACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKL---- 231 (328)
T ss_dssp EEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTC----
T ss_pred CCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCC----
Confidence 99888878887664 24889999999999998 778888899999999999999885 44456555554
Q ss_pred CCccccccCcccccccccccccccceeEEEeeccccccccccCceeEEEcccCccccccchhhhccccCcEEEccCCcce
Q 042537 582 SSNLAITSNYTFERQGIEFLESYVDNVVLTWKGSQHEYRSTLGLVKILDFSMNKLSGTIPEEIMDLVGLVALNLSRNNLT 661 (789)
Q Consensus 582 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 661 (789)
+.|++++|++.+.+|..|+.+++|++|+|++|++.
T Consensus 232 ---------------------------------------------~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~ 266 (328)
T 4fcg_A 232 ---------------------------------------------EELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNL 266 (328)
T ss_dssp ---------------------------------------------CEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTC
T ss_pred ---------------------------------------------CEEECcCCcchhhhHHHhcCCCCCCEEECCCCCch
Confidence 88999999999899999999999999999999999
Q ss_pred eecCcccccCCCCCEEeCCCCcccccCchhhhcCCCCCeEeccCCccc
Q 042537 662 GQITPKIDQLKSLDFLDLSQNQFVGGIPSSLCQLSRLSVMNLSYNNLS 709 (789)
Q Consensus 662 ~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~ 709 (789)
+.+|..+..+++|+.|+|++|++.+.+|..+..+++|+.+++..|.+.
T Consensus 267 ~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 267 LTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp CBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred hhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence 899999999999999999999999999999999999999999877664
No 61
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.95 E-value=1.3e-27 Score=245.96 Aligned_cols=252 Identities=21% Similarity=0.222 Sum_probs=201.0
Q ss_pred EEEcCCCcCccccchhcccCCCCCCEEEcCCCccccCCCcccccCCCCcEEEcCCCcCcccCCccccccCcccEEEccCC
Q 042537 409 VLNLSRNKFSESISFLCSINGHKLEFLDLSNNILSGRLPDCWMQFDRLAVLSLANNFFSGKIPKSMGFLHSIQTLSLYNN 488 (789)
Q Consensus 409 ~L~l~~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 488 (789)
.++.+++.++..+.... +++++|++++|.+++..+..|..+++|++|++++|.+++..|..|..+++|++|++++|
T Consensus 15 ~~~c~~~~l~~ip~~~~----~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 15 TTSCPQQGLQAVPVGIP----AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp EEECCSSCCSSCCTTCC----TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred EEEcCcCCcccCCcCCC----CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence 44455554444332221 67888888888888777778888999999999999998888888888999999999999
Q ss_pred e-eeeeCCcCccCCCCCcEEeCCCCcccccCchhhhhcCCCCcEEEcCCCcccccCCCCccCCCcCceEeccCCcccccC
Q 042537 489 S-LIGELPSFFKSCSQLILMDLGKNGLSGEIPTWIGEGLPKLVVLSLKSNKFHGNIPFQVCQLSYIQILDLSLNNISGII 567 (789)
Q Consensus 489 ~-l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 567 (789)
. +....+..|..+++|++|++++|.+++..|..+ ..+++|++|++++|++++..+..+..+++|++|++++|++++..
T Consensus 91 ~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 169 (285)
T 1ozn_A 91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLF-RGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVP 169 (285)
T ss_dssp TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTT-TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEEC
T ss_pred CCccccCHHHhcCCcCCCEEECCCCcCCEECHhHh-hCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccC
Confidence 7 777768888889999999999999984444444 47899999999999998777777888999999999999988776
Q ss_pred CccccccccCcccCCCccccccCcccccccccccccccceeEEEeeccccccccccCceeEEEcccCccccccchhhhcc
Q 042537 568 PKCLNNFTGMAQKSSSNLAITSNYTFERQGIEFLESYVDNVVLTWKGSQHEYRSTLGLVKILDFSMNKLSGTIPEEIMDL 647 (789)
Q Consensus 568 p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l 647 (789)
+..+..+++| +.|++++|++++..|..|..+
T Consensus 170 ~~~~~~l~~L-------------------------------------------------~~L~l~~n~l~~~~~~~~~~l 200 (285)
T 1ozn_A 170 ERAFRGLHSL-------------------------------------------------DRLLLHQNRVAHVHPHAFRDL 200 (285)
T ss_dssp TTTTTTCTTC-------------------------------------------------CEEECCSSCCCEECTTTTTTC
T ss_pred HHHhcCcccc-------------------------------------------------CEEECCCCcccccCHhHccCc
Confidence 6666665555 899999999998889999999
Q ss_pred ccCcEEEccCCcceeecCcccccCCCCCEEeCCCCcccccCchhhhcCCCCCeEeccCCcccccCCCC
Q 042537 648 VGLVALNLSRNNLTGQITPKIDQLKSLDFLDLSQNQFVGGIPSSLCQLSRLSVMNLSYNNLSGKIPLG 715 (789)
Q Consensus 648 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~ 715 (789)
++|+.|++++|++++..+..+..+++|+.|++++|++....+.. .-...++.+..+.+.+.|..|..
T Consensus 201 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~-~~~~~l~~~~~~~~~~~c~~p~~ 267 (285)
T 1ozn_A 201 GRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR-PLWAWLQKFRGSSSEVPCSLPQR 267 (285)
T ss_dssp TTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGH-HHHHHHHHCCSEECCCBEEESGG
T ss_pred ccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcH-HHHHHHHhcccccCccccCCchH
Confidence 99999999999999766677999999999999999998654421 11233555667889999988863
No 62
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.95 E-value=1.3e-28 Score=281.68 Aligned_cols=87 Identities=13% Similarity=0.047 Sum_probs=49.5
Q ss_pred CceeEEEcccC--ccccccchhhhc-cccCcEEEccCCcceee-cCcccccCCCCCEEeCCCCccccc-CchhhhcCCCC
Q 042537 624 GLVKILDFSMN--KLSGTIPEEIMD-LVGLVALNLSRNNLTGQ-ITPKIDQLKSLDFLDLSQNQFVGG-IPSSLCQLSRL 698 (789)
Q Consensus 624 ~~L~~L~Ls~N--~l~~~~p~~~~~-l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L~Ls~N~l~~~-~p~~l~~l~~L 698 (789)
+.|+.|++++| .+++..+..+.. +++|++|+|++|++++. ++..+..+++|+.|+|++|.+++. ++..+..+++|
T Consensus 436 ~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L 515 (592)
T 3ogk_B 436 KKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSL 515 (592)
T ss_dssp TTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSC
T ss_pred CCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCcc
Confidence 33466666533 245444444433 56677777777766642 333345666677777777766543 23334556677
Q ss_pred CeEeccCCcccc
Q 042537 699 SVMNLSYNNLSG 710 (789)
Q Consensus 699 ~~L~ls~N~l~~ 710 (789)
++|++++|+++.
T Consensus 516 ~~L~ls~n~it~ 527 (592)
T 3ogk_B 516 RYLWVQGYRASM 527 (592)
T ss_dssp CEEEEESCBCCT
T ss_pred CeeECcCCcCCH
Confidence 777777776553
No 63
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.93 E-value=6.3e-29 Score=284.48 Aligned_cols=248 Identities=17% Similarity=0.149 Sum_probs=147.4
Q ss_pred CCceeeeEecCCCCcEEEEEcCCCCCCCCcccccCccccCCCCCCEEeCCCCCCCC-CC-C------------cccccCC
Q 042537 34 CCYWRGVRCSNTTGHVIVLDLQVLVHSEPLKGTISPSLLKLYHLRHLDLSENDFSG-SR-I------------PEFIGSL 99 (789)
Q Consensus 34 ~c~w~gv~c~~~~~~v~~l~L~~~~~~~~l~~~l~~~~~~l~~L~~L~Ls~n~i~~-~~-~------------~~~~~~l 99 (789)
|++|.++.. ...+++++..+. . ......+.++++|++|+++++.... .. . +.....+
T Consensus 34 ck~W~~~~~----~~~~~l~~~~~~---~--~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~ 104 (594)
T 2p1m_B 34 CKSWYEIER----WCRRKVFIGNCY---A--VSPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSY 104 (594)
T ss_dssp CHHHHHHHH----HHCCEEEESSTT---S--SCHHHHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHC
T ss_pred HHHHHHhhh----hhceEEeecccc---c--cCHHHHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhC
Confidence 678988832 123456666521 1 1112356788999999999875211 00 1 1223568
Q ss_pred CCCCEEecCCCcCCCCCCcccc-CCCCCcEEeccCc-cCCCCcchHHhhCCCCCCCEEEcCCCCCCCCccccccccccCC
Q 042537 100 NKLRYLSLSSAEFEGPIPSQLG-NLSRLKYLDLSYI-NLNKSRDWLRIIDKLPSLRTLNLEHCHLPPIIPSDLLHLNFST 177 (789)
Q Consensus 100 ~~L~~L~Ls~n~i~~~~p~~~~-~l~~L~~L~Ls~n-~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~ 177 (789)
++|++|+|++|.+++..+..+. .+++|++|+|++| .++. ..++..+.++++|++|++++|.+++..+..+....-..
T Consensus 105 ~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~-~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~ 183 (594)
T 2p1m_B 105 TWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFST-DGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTY 183 (594)
T ss_dssp TTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEH-HHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTC
T ss_pred CCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCH-HHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcC
Confidence 8999999999998876666665 6899999999998 4433 22556666899999999999987664432222111112
Q ss_pred CCCCeEEccCCC--CCCCchhHHHhhcCCCcEEEccCC-CCcccCchhhhcCCCCcEEECCCCCccEEecCCCcCcccch
Q 042537 178 SSLGALYLFENS--LSSSIYPWLFNISSKLVVLDLDSN-LLQGSLLEPFDRMVSLRTLYLGFNELEELFLGKNRLNGTIN 254 (789)
Q Consensus 178 ~~L~~L~l~~n~--l~~~~~~~~~~~~~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~L~~n~L~~L~L~~n~l~~~~~ 254 (789)
++|++|++++|. +.......+....++|++|++++| .+.+ .+..+..+++|+.|+++.+.. ++..+.+.+ ++
T Consensus 184 ~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~-l~~~~~~~~~L~~L~l~~~~~---~~~~~~~~~-l~ 258 (594)
T 2p1m_B 184 TSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEK-LATLLQRAPQLEELGTGGYTA---EVRPDVYSG-LS 258 (594)
T ss_dssp CCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHH-HHHHHHHCTTCSEEECSBCCC---CCCHHHHHH-HH
T ss_pred CcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHH-HHHHHhcCCcceEcccccccC---ccchhhHHH-HH
Confidence 688888888776 221222223333457888888777 3333 566677777777777664321 122333333 23
Q ss_pred hhhhCCCCCCEE-EccCCCCCCccChhhhhcCCCCcEEEccCCcc
Q 042537 255 QWLSRMYKLDAL-SLSGNSLTGVVTESVFSELSNLKALHLDDNSF 298 (789)
Q Consensus 255 ~~l~~l~~L~~L-~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i 298 (789)
..+.++++|+.| .+.+.... .++. .+..+++|++|++++|.+
T Consensus 259 ~~l~~~~~L~~Ls~~~~~~~~-~l~~-~~~~~~~L~~L~L~~~~l 301 (594)
T 2p1m_B 259 VALSGCKELRCLSGFWDAVPA-YLPA-VYSVCSRLTTLNLSYATV 301 (594)
T ss_dssp HHHHTCTTCCEEECCBTCCGG-GGGG-GHHHHTTCCEEECTTCCC
T ss_pred HHHhcCCCcccccCCcccchh-hHHH-HHHhhCCCCEEEccCCCC
Confidence 356667777776 33332221 2222 234556666666666553
No 64
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.93 E-value=3.6e-25 Score=226.41 Aligned_cols=229 Identities=20% Similarity=0.151 Sum_probs=169.7
Q ss_pred EEcCCCccccCCCcccccCCCCcEEEcCCCcCcccCCccccccCcccEEEccCCeeeeeCCcCccCCCCCcEEeCCCCcc
Q 042537 435 LDLSNNILSGRLPDCWMQFDRLAVLSLANNFFSGKIPKSMGFLHSIQTLSLYNNSLIGELPSFFKSCSQLILMDLGKNGL 514 (789)
Q Consensus 435 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l 514 (789)
++..+..++ .+|..+. ++|++|++++|++++..+..|..+++|++|++++|.+++..+..|.++++|++|++++|++
T Consensus 12 ~~c~~~~l~-~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 88 (276)
T 2z62_A 12 YQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 88 (276)
T ss_dssp EECTTSCCS-SCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred EEecCCCcc-ccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCcc
Confidence 444444444 3444332 3577777777777766666677777777777777777766666777777777777777777
Q ss_pred cccCchhhhhcCCCCcEEEcCCCcccccCCCCccCCCcCceEeccCCccccc-CCccccccccCcccCCCccccccCccc
Q 042537 515 SGEIPTWIGEGLPKLVVLSLKSNKFHGNIPFQVCQLSYIQILDLSLNNISGI-IPKCLNNFTGMAQKSSSNLAITSNYTF 593 (789)
Q Consensus 515 ~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~l~~~~~~~~~~~~~ 593 (789)
++..+..+ .++++|++|++++|++.+..+..+..+++|++|++++|.+++. +|..+..+++|
T Consensus 89 ~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L---------------- 151 (276)
T 2z62_A 89 QSLALGAF-SGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNL---------------- 151 (276)
T ss_dssp CEECTTTT-TTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTC----------------
T ss_pred CccChhhh-cCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCC----------------
Confidence 73333333 3677778888887777766666677888888888888888764 46666665555
Q ss_pred ccccccccccccceeEEEeeccccccccccCceeEEEcccCccccccchhhhccccCc----EEEccCCcceeecCcccc
Q 042537 594 ERQGIEFLESYVDNVVLTWKGSQHEYRSTLGLVKILDFSMNKLSGTIPEEIMDLVGLV----ALNLSRNNLTGQITPKID 669 (789)
Q Consensus 594 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~----~L~Ls~N~l~~~~p~~~~ 669 (789)
+.|++++|++++..+..|..+++|+ +|++++|++++..+..+.
T Consensus 152 ---------------------------------~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~ 198 (276)
T 2z62_A 152 ---------------------------------EHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK 198 (276)
T ss_dssp ---------------------------------CEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSC
T ss_pred ---------------------------------CEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccC
Confidence 8888888888877777888888777 899999999966555554
Q ss_pred cCCCCCEEeCCCCcccccCchhhhcCCCCCeEeccCCcccccCCCCCc
Q 042537 670 QLKSLDFLDLSQNQFVGGIPSSLCQLSRLSVMNLSYNNLSGKIPLGTQ 717 (789)
Q Consensus 670 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~ 717 (789)
..+|+.|++++|++++..+..|..+++|++|++++|++.|.+|....
T Consensus 199 -~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~l~~ 245 (276)
T 2z62_A 199 -EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDY 245 (276)
T ss_dssp -SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTTTTHH
T ss_pred -CCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCCchHH
Confidence 45899999999999988777889999999999999999999886543
No 65
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.93 E-value=1.5e-24 Score=243.85 Aligned_cols=262 Identities=26% Similarity=0.258 Sum_probs=161.9
Q ss_pred CCCeeeeccccccccCCCCCCCCCCCCCEEEccCCcccccCCCCCCCCcEEEcCCCcCccccchhcccCCCCCCEEEcCC
Q 042537 360 TIADFNLSNNHIKGKLPNLSLRFDPFSSSIDISSNYFEGLIPPLPSNASVLNLSRNKFSESISFLCSINGHKLEFLDLSN 439 (789)
Q Consensus 360 ~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~Ls~ 439 (789)
.++.|++++|.++ .+|. .+. ++|+.|++++|.++... ..+++|+.|++++|++++.+. ..++|++|++++
T Consensus 41 ~l~~L~ls~n~L~-~lp~-~l~--~~L~~L~L~~N~l~~lp-~~l~~L~~L~Ls~N~l~~lp~-----~l~~L~~L~Ls~ 110 (622)
T 3g06_A 41 GNAVLNVGESGLT-TLPD-CLP--AHITTLVIPDNNLTSLP-ALPPELRTLEVSGNQLTSLPV-----LPPGLLELSIFS 110 (622)
T ss_dssp CCCEEECCSSCCS-CCCS-CCC--TTCSEEEECSCCCSCCC-CCCTTCCEEEECSCCCSCCCC-----CCTTCCEEEECS
T ss_pred CCcEEEecCCCcC-ccCh-hhC--CCCcEEEecCCCCCCCC-CcCCCCCEEEcCCCcCCcCCC-----CCCCCCEEECcC
Confidence 3555555555554 4443 121 45566666666555432 245666666666666655433 126677777777
Q ss_pred CccccCCCcccccCCCCcEEEcCCCcCcccCCccccccCcccEEEccCCeeeeeCCcCccCCCCCcEEeCCCCcccccCc
Q 042537 440 NILSGRLPDCWMQFDRLAVLSLANNFFSGKIPKSMGFLHSIQTLSLYNNSLIGELPSFFKSCSQLILMDLGKNGLSGEIP 519 (789)
Q Consensus 440 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p 519 (789)
|.+++. |. .+++|+.|++++|+++. +|.. +++|++|++++|.+++. |. .+++|+.|++++|.++ .+|
T Consensus 111 N~l~~l-~~---~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~l-~~---~~~~L~~L~L~~N~l~-~l~ 177 (622)
T 3g06_A 111 NPLTHL-PA---LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLASL-PA---LPSELCKLWAYNNQLT-SLP 177 (622)
T ss_dssp CCCCCC-CC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCS-CCC
T ss_pred CcCCCC-CC---CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCCc-CC---ccCCCCEEECCCCCCC-CCc
Confidence 777643 32 45667777777777764 3432 36677777777777643 32 2356777777777776 566
Q ss_pred hhhhhcCCCCcEEEcCCCcccccCCCCccCCCcCceEeccCCcccccCCccccccccCcccCCCccccccCccccccccc
Q 042537 520 TWIGEGLPKLVVLSLKSNKFHGNIPFQVCQLSYIQILDLSLNNISGIIPKCLNNFTGMAQKSSSNLAITSNYTFERQGIE 599 (789)
Q Consensus 520 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~ 599 (789)
..+++|+.|++++|++++ +|.. +++|+.|++++|.++.. |..
T Consensus 178 ----~~~~~L~~L~Ls~N~l~~-l~~~---~~~L~~L~L~~N~l~~l-~~~----------------------------- 219 (622)
T 3g06_A 178 ----MLPSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTSL-PAL----------------------------- 219 (622)
T ss_dssp ----CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSSC-CCC-----------------------------
T ss_pred ----ccCCCCcEEECCCCCCCC-CCCc---cchhhEEECcCCccccc-CCC-----------------------------
Confidence 135677777777777764 3322 35677777777776632 211
Q ss_pred ccccccceeEEEeeccccccccccCceeEEEcccCccccccchhhhccccCcEEEccCCcceeecCcccccCCCCCEEeC
Q 042537 600 FLESYVDNVVLTWKGSQHEYRSTLGLVKILDFSMNKLSGTIPEEIMDLVGLVALNLSRNNLTGQITPKIDQLKSLDFLDL 679 (789)
Q Consensus 600 ~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 679 (789)
+++|+.|++++|++++ +| ..+++|+.|+|++|+|+ .+|. .+++|+.|+|
T Consensus 220 -----------------------~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~L 268 (622)
T 3g06_A 220 -----------------------PSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSV 268 (622)
T ss_dssp -----------------------CTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEEC
T ss_pred -----------------------CCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeC
Confidence 1234777777777774 45 44567777777777777 4554 5567777777
Q ss_pred CCCcccccCchhhhcCCCCCeEeccCCcccccCCC
Q 042537 680 SQNQFVGGIPSSLCQLSRLSVMNLSYNNLSGKIPL 714 (789)
Q Consensus 680 s~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~ 714 (789)
++|+|+ .+|..+..+++|+.|++++|++++.+|.
T Consensus 269 s~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~ 302 (622)
T 3g06_A 269 YRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQ 302 (622)
T ss_dssp CSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHH
T ss_pred CCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHH
Confidence 777777 5677777777777777777777776653
No 66
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.93 E-value=8.3e-28 Score=250.36 Aligned_cols=80 Identities=29% Similarity=0.282 Sum_probs=49.9
Q ss_pred eeEEEcccCccccccc-hhhhccccCcEEEccCCcceeecCcccccCCCCCEEeCCCCcccccCchhhhcCCCCCeEecc
Q 042537 626 VKILDFSMNKLSGTIP-EEIMDLVGLVALNLSRNNLTGQITPKIDQLKSLDFLDLSQNQFVGGIPSSLCQLSRLSVMNLS 704 (789)
Q Consensus 626 L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls 704 (789)
|+.|++++|++++.+| ..+..+++|++|+|++|+++ .+|..+. ++|+.|||++|++++. |. +..+++|++|+++
T Consensus 230 L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~ 304 (312)
T 1wwl_A 230 LQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLK 304 (312)
T ss_dssp CSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECT
T ss_pred CCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEecc
Confidence 3556666666655443 33445566666677766666 5555554 6677777777777655 44 6667777777777
Q ss_pred CCcccc
Q 042537 705 YNNLSG 710 (789)
Q Consensus 705 ~N~l~~ 710 (789)
+|++++
T Consensus 305 ~N~l~~ 310 (312)
T 1wwl_A 305 GNPFLD 310 (312)
T ss_dssp TCTTTC
T ss_pred CCCCCC
Confidence 777654
No 67
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.93 E-value=3.2e-26 Score=252.85 Aligned_cols=216 Identities=23% Similarity=0.238 Sum_probs=181.9
Q ss_pred CCCCEEEcCCCccccCCCcccccCCCCcEEEcCCCcCcccCCccccccCcccEEEccCCeeeeeCCcCccCCCCCcEEeC
Q 042537 430 HKLEFLDLSNNILSGRLPDCWMQFDRLAVLSLANNFFSGKIPKSMGFLHSIQTLSLYNNSLIGELPSFFKSCSQLILMDL 509 (789)
Q Consensus 430 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 509 (789)
++|++|++++|.+++..|..|..+++|++|+|++|.+++..| +..+++|++|++++|.+++..+ .++|++|++
T Consensus 34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~L~L 106 (487)
T 3oja_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIETLHA 106 (487)
T ss_dssp GGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-----CTTCCEEEC
T ss_pred CCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-----CCCcCEEEC
Confidence 579999999999998888899999999999999999987665 8889999999999999986543 389999999
Q ss_pred CCCcccccCchhhhhcCCCCcEEEcCCCcccccCCCCccCCCcCceEeccCCcccccCCcccc-ccccCcccCCCccccc
Q 042537 510 GKNGLSGEIPTWIGEGLPKLVVLSLKSNKFHGNIPFQVCQLSYIQILDLSLNNISGIIPKCLN-NFTGMAQKSSSNLAIT 588 (789)
Q Consensus 510 s~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~-~l~~L~~l~~~~~~~~ 588 (789)
++|.+++ ++.. .+++|+.|++++|.+++..|..+..+++|+.|++++|.+++..|..+. .+++|
T Consensus 107 ~~N~l~~-~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L----------- 171 (487)
T 3oja_A 107 ANNNISR-VSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTL----------- 171 (487)
T ss_dssp CSSCCCC-EEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTC-----------
T ss_pred cCCcCCC-CCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcc-----------
Confidence 9999984 4432 468899999999999988888899999999999999999987776654 44444
Q ss_pred cCcccccccccccccccceeEEEeeccccccccccCceeEEEcccCccccccchhhhccccCcEEEccCCcceeecCccc
Q 042537 589 SNYTFERQGIEFLESYVDNVVLTWKGSQHEYRSTLGLVKILDFSMNKLSGTIPEEIMDLVGLVALNLSRNNLTGQITPKI 668 (789)
Q Consensus 589 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~ 668 (789)
+.|+|++|.+++..+ +..+++|+.|+|++|++++ +|+.+
T Consensus 172 --------------------------------------~~L~Ls~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~-~~~~~ 210 (487)
T 3oja_A 172 --------------------------------------EHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAF-MGPEF 210 (487)
T ss_dssp --------------------------------------CEEECTTSCCCEEEC--CCCCTTCCEEECCSSCCCE-ECGGG
T ss_pred --------------------------------------cEEecCCCccccccc--cccCCCCCEEECCCCCCCC-CCHhH
Confidence 899999999986533 3468899999999999996 45558
Q ss_pred ccCCCCCEEeCCCCcccccCchhhhcCCCCCeEeccCCccc
Q 042537 669 DQLKSLDFLDLSQNQFVGGIPSSLCQLSRLSVMNLSYNNLS 709 (789)
Q Consensus 669 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~ 709 (789)
..+++|+.|+|++|.+++ +|..+..+++|+.|++++|++.
T Consensus 211 ~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 211 QSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp GGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBC
T ss_pred cCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCc
Confidence 899999999999999995 6777888999999999999987
No 68
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.93 E-value=4.7e-26 Score=237.70 Aligned_cols=216 Identities=23% Similarity=0.245 Sum_probs=130.1
Q ss_pred CCCCEEEcCCCccccCCCcccccCCCCcEEEcCCCcCcccCCccccccCcccEEEccCCeeeeeCCcCccCCCCCcEEeC
Q 042537 430 HKLEFLDLSNNILSGRLPDCWMQFDRLAVLSLANNFFSGKIPKSMGFLHSIQTLSLYNNSLIGELPSFFKSCSQLILMDL 509 (789)
Q Consensus 430 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 509 (789)
++|++|++++|++++..|..|.++++|++|++++|++++..+ +..+++|++|++++|.+++.. ..++|++|++
T Consensus 34 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~-----~~~~L~~L~l 106 (317)
T 3o53_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIETLHA 106 (317)
T ss_dssp GGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEEE-----ECTTCCEEEC
T ss_pred CCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcccccc-----CCCCcCEEEC
Confidence 567777777777776666667777777777777777765443 666777777777777766433 2367777777
Q ss_pred CCCcccccCchhhhhcCCCCcEEEcCCCcccccCCCCccCCCcCceEeccCCcccccCCcccc-ccccCcccCCCccccc
Q 042537 510 GKNGLSGEIPTWIGEGLPKLVVLSLKSNKFHGNIPFQVCQLSYIQILDLSLNNISGIIPKCLN-NFTGMAQKSSSNLAIT 588 (789)
Q Consensus 510 s~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~-~l~~L~~l~~~~~~~~ 588 (789)
++|+++ .++.. .+++|++|++++|++++..+..+..+++|++|++++|.+++..+..+. .+++|
T Consensus 107 ~~n~l~-~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L----------- 171 (317)
T 3o53_A 107 ANNNIS-RVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTL----------- 171 (317)
T ss_dssp CSSCCS-EEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTC-----------
T ss_pred CCCccC-CcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcC-----------
Confidence 777776 33322 246677777777777766666666677777777777776655444332 23333
Q ss_pred cCcccccccccccccccceeEEEeeccccccccccCceeEEEcccCccccccchhhhccccCcEEEccCCcceeecCccc
Q 042537 589 SNYTFERQGIEFLESYVDNVVLTWKGSQHEYRSTLGLVKILDFSMNKLSGTIPEEIMDLVGLVALNLSRNNLTGQITPKI 668 (789)
Q Consensus 589 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~ 668 (789)
+.|++++|++++. |. ...+++|++|+|++|++++ +|+.+
T Consensus 172 --------------------------------------~~L~L~~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~-l~~~~ 210 (317)
T 3o53_A 172 --------------------------------------EHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAF-MGPEF 210 (317)
T ss_dssp --------------------------------------CEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCE-ECGGG
T ss_pred --------------------------------------CEEECCCCcCccc-cc-ccccccCCEEECCCCcCCc-chhhh
Confidence 5556666665533 21 2235556666666666653 33345
Q ss_pred ccCCCCCEEeCCCCcccccCchhhhcCCCCCeEeccCCccc
Q 042537 669 DQLKSLDFLDLSQNQFVGGIPSSLCQLSRLSVMNLSYNNLS 709 (789)
Q Consensus 669 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~ 709 (789)
..+++|+.|+|++|+++ .+|..+..+++|+.|++++|++.
T Consensus 211 ~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 211 QSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFH 250 (317)
T ss_dssp GGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCB
T ss_pred cccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCcc
Confidence 55566666666666655 34445555556666666666555
No 69
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.93 E-value=2.5e-26 Score=239.83 Aligned_cols=276 Identities=18% Similarity=0.209 Sum_probs=168.8
Q ss_pred CcEEECCCCCccEEecCCCcCcccchhhhhCCCCCCEEEccCCCCCCccChhhhhcCCCCcEEEccCCcccccccCCCCC
Q 042537 229 LRTLYLGFNELEELFLGKNRLNGTINQWLSRMYKLDALSLSGNSLTGVVTESVFSELSNLKALHLDDNSFTLKFSHDWIP 308 (789)
Q Consensus 229 L~~L~L~~n~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~ 308 (789)
++.+.+.++.++..+++.+.+...+...+..+++|++|+|++|.+++ ++...|..+++|++|++++|.+++..
T Consensus 2 i~~l~~~g~~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~------ 74 (317)
T 3o53_A 2 IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQ-ISAADLAPFTKLELLNLSSNVLYETL------ 74 (317)
T ss_dssp CCEEEEETTEEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCC-CCHHHHTTCTTCCEEECTTSCCEEEE------
T ss_pred cccccCCcCceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCc-CCHHHhhCCCcCCEEECCCCcCCcch------
Confidence 34555666666666666777766666666777788888888888874 45446788888888888887776322
Q ss_pred cccceeEeccCccCCCCCchhccCCCCccEEEccCCcCCCCcchhHhhhccCCCeeeeccccccccCCCCCCCCCCCCCE
Q 042537 309 PFQLIIILLGSCQMGPHFPKWLQTQNQIEVLDISDAGISDTVPDWFWDLSHTIADFNLSNNHIKGKLPNLSLRFDPFSSS 388 (789)
Q Consensus 309 ~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~ 388 (789)
. +..+++|++|++++|.+++..+. ++ |++
T Consensus 75 -------------------~-~~~l~~L~~L~Ls~n~l~~l~~~------~~-------------------------L~~ 103 (317)
T 3o53_A 75 -------------------D-LESLSTLRTLDLNNNYVQELLVG------PS-------------------------IET 103 (317)
T ss_dssp -------------------E-ETTCTTCCEEECCSSEEEEEEEC------TT-------------------------CCE
T ss_pred -------------------h-hhhcCCCCEEECcCCccccccCC------CC-------------------------cCE
Confidence 1 44555666666666655432211 23 334
Q ss_pred EEccCCcccccCCCCCCCCcEEEcCCCcCccccchhcccCCCCCCEEEcCCCccccCCCcccc-cCCCCcEEEcCCCcCc
Q 042537 389 IDISSNYFEGLIPPLPSNASVLNLSRNKFSESISFLCSINGHKLEFLDLSNNILSGRLPDCWM-QFDRLAVLSLANNFFS 467 (789)
Q Consensus 389 L~l~~n~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~ 467 (789)
|++++|.+++..+..+++|+.|++++|++++..+.... .+++|++|++++|.+++..+..+. .+++|++|++++|.++
T Consensus 104 L~l~~n~l~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~ 182 (317)
T 3o53_A 104 LHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEG-CRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY 182 (317)
T ss_dssp EECCSSCCSEEEECCCSSCEEEECCSSCCCSGGGBCTG-GGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCC
T ss_pred EECCCCccCCcCccccCCCCEEECCCCCCCCccchhhh-ccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCc
Confidence 44444444433333345556666666666554432221 126677777777777765555553 5677777777777776
Q ss_pred ccCCccccccCcccEEEccCCeeeeeCCcCccCCCCCcEEeCCCCcccccCchhhhhcCCCCcEEEcCCCccc-ccCCCC
Q 042537 468 GKIPKSMGFLHSIQTLSLYNNSLIGELPSFFKSCSQLILMDLGKNGLSGEIPTWIGEGLPKLVVLSLKSNKFH-GNIPFQ 546 (789)
Q Consensus 468 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~-~~~~~~ 546 (789)
+..+ ...+++|++|++++|++++..+ .+..+++|+.|++++|+++ .+|..+. .+++|+.|++++|++. +..+..
T Consensus 183 ~~~~--~~~l~~L~~L~Ls~N~l~~l~~-~~~~l~~L~~L~L~~N~l~-~l~~~~~-~l~~L~~L~l~~N~~~~~~~~~~ 257 (317)
T 3o53_A 183 DVKG--QVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLV-LIEKALR-FSQNLEHFDLRGNGFHCGTLRDF 257 (317)
T ss_dssp EEEC--CCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCC-EECTTCC-CCTTCCEEECTTCCCBHHHHHHH
T ss_pred cccc--ccccccCCEEECCCCcCCcchh-hhcccCcccEEECcCCccc-chhhHhh-cCCCCCEEEccCCCccCcCHHHH
Confidence 5422 2236677777777777775433 3666777777777777776 5666554 5677777777777776 555666
Q ss_pred ccCCCcCceEeccCC-cccccCC
Q 042537 547 VCQLSYIQILDLSLN-NISGIIP 568 (789)
Q Consensus 547 ~~~l~~L~~L~Ls~N-~l~~~~p 568 (789)
+..++.|+.++++++ .+.+..|
T Consensus 258 ~~~~~~L~~l~l~~~~~l~~~~~ 280 (317)
T 3o53_A 258 FSKNQRVQTVAKQTVKKLTGQNE 280 (317)
T ss_dssp HHTCHHHHHHHHHHHHHHHSSSS
T ss_pred HhccccceEEECCCchhccCCch
Confidence 666777777777633 3444433
No 70
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.93 E-value=2.3e-24 Score=242.43 Aligned_cols=268 Identities=25% Similarity=0.332 Sum_probs=202.4
Q ss_pred CccEEEccCCcCCCCcchhHhhhccCCCeeeeccccccccCCCCCCCCCCCCCEEEccCCcccccCCCCCCCCcEEEcCC
Q 042537 335 QIEVLDISDAGISDTVPDWFWDLSHTIADFNLSNNHIKGKLPNLSLRFDPFSSSIDISSNYFEGLIPPLPSNASVLNLSR 414 (789)
Q Consensus 335 ~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~ 414 (789)
.++.|++++|.++. +|..+. ++|+.|++++|.++ .+|. .+++|++|++++|.+++... .+++|+.|++++
T Consensus 41 ~l~~L~ls~n~L~~-lp~~l~---~~L~~L~L~~N~l~-~lp~----~l~~L~~L~Ls~N~l~~lp~-~l~~L~~L~Ls~ 110 (622)
T 3g06_A 41 GNAVLNVGESGLTT-LPDCLP---AHITTLVIPDNNLT-SLPA----LPPELRTLEVSGNQLTSLPV-LPPGLLELSIFS 110 (622)
T ss_dssp CCCEEECCSSCCSC-CCSCCC---TTCSEEEECSCCCS-CCCC----CCTTCCEEEECSCCCSCCCC-CCTTCCEEEECS
T ss_pred CCcEEEecCCCcCc-cChhhC---CCCcEEEecCCCCC-CCCC----cCCCCCEEEcCCCcCCcCCC-CCCCCCEEECcC
Confidence 35566666666652 333222 46666666666665 3443 34567777777777765433 667888888888
Q ss_pred CcCccccchhcccCCCCCCEEEcCCCccccCCCcccccCCCCcEEEcCCCcCcccCCccccccCcccEEEccCCeeeeeC
Q 042537 415 NKFSESISFLCSINGHKLEFLDLSNNILSGRLPDCWMQFDRLAVLSLANNFFSGKIPKSMGFLHSIQTLSLYNNSLIGEL 494 (789)
Q Consensus 415 n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 494 (789)
|++++.+. ..++|+.|++++|++++ +|.. +++|++|++++|++++ +|. .+++|+.|++++|.+++ +
T Consensus 111 N~l~~l~~-----~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~-l 176 (622)
T 3g06_A 111 NPLTHLPA-----LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLAS-LPA---LPSELCKLWAYNNQLTS-L 176 (622)
T ss_dssp CCCCCCCC-----CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-C
T ss_pred CcCCCCCC-----CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCC-cCC---ccCCCCEEECCCCCCCC-C
Confidence 88877554 12789999999999885 4443 4889999999999985 443 34679999999999985 4
Q ss_pred CcCccCCCCCcEEeCCCCcccccCchhhhhcCCCCcEEEcCCCcccccCCCCccCCCcCceEeccCCcccccCCcccccc
Q 042537 495 PSFFKSCSQLILMDLGKNGLSGEIPTWIGEGLPKLVVLSLKSNKFHGNIPFQVCQLSYIQILDLSLNNISGIIPKCLNNF 574 (789)
Q Consensus 495 ~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l 574 (789)
| ..+++|+.|++++|.++ .+|. .+++|+.|++++|.++. +|.. +++|+.|++++|.+++ +|. .
T Consensus 177 ~---~~~~~L~~L~Ls~N~l~-~l~~----~~~~L~~L~L~~N~l~~-l~~~---~~~L~~L~Ls~N~L~~-lp~---~- 239 (622)
T 3g06_A 177 P---MLPSGLQELSVSDNQLA-SLPT----LPSELYKLWAYNNRLTS-LPAL---PSGLKELIVSGNRLTS-LPV---L- 239 (622)
T ss_dssp C---CCCTTCCEEECCSSCCS-CCCC----CCTTCCEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSC-CCC---C-
T ss_pred c---ccCCCCcEEECCCCCCC-CCCC----ccchhhEEECcCCcccc-cCCC---CCCCCEEEccCCccCc-CCC---C-
Confidence 4 45689999999999998 6775 35789999999999984 4432 4789999999999885 331 1
Q ss_pred ccCcccCCCccccccCcccccccccccccccceeEEEeeccccccccccCceeEEEcccCccccccchhhhccccCcEEE
Q 042537 575 TGMAQKSSSNLAITSNYTFERQGIEFLESYVDNVVLTWKGSQHEYRSTLGLVKILDFSMNKLSGTIPEEIMDLVGLVALN 654 (789)
Q Consensus 575 ~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 654 (789)
+++|+.|++++|+|+ .+|. .+++|+.|+
T Consensus 240 ------------------------------------------------l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~ 267 (622)
T 3g06_A 240 ------------------------------------------------PSELKELMVSGNRLT-SLPM---LPSGLLSLS 267 (622)
T ss_dssp ------------------------------------------------CTTCCEEECCSSCCS-CCCC---CCTTCCEEE
T ss_pred ------------------------------------------------CCcCcEEECCCCCCC-cCCc---ccccCcEEe
Confidence 233489999999999 5665 678999999
Q ss_pred ccCCcceeecCcccccCCCCCEEeCCCCcccccCchhhhcCC
Q 042537 655 LSRNNLTGQITPKIDQLKSLDFLDLSQNQFVGGIPSSLCQLS 696 (789)
Q Consensus 655 Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~ 696 (789)
|++|+|+ .+|..+.++++|+.|+|++|++++.+|..+..++
T Consensus 268 Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L~ 308 (622)
T 3g06_A 268 VYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREIT 308 (622)
T ss_dssp CCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHHHH
T ss_pred CCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHHhcc
Confidence 9999999 7899999999999999999999999999887765
No 71
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.93 E-value=7.7e-27 Score=243.05 Aligned_cols=87 Identities=20% Similarity=0.143 Sum_probs=41.5
Q ss_pred cCCCCCCEEeCCCCCCCCCCCcccccCCCCCCEEecCCCcCC-CCCCcccc-------CCCCCcEEeccCccCCCCcchH
Q 042537 72 LKLYHLRHLDLSENDFSGSRIPEFIGSLNKLRYLSLSSAEFE-GPIPSQLG-------NLSRLKYLDLSYINLNKSRDWL 143 (789)
Q Consensus 72 ~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~i~-~~~p~~~~-------~l~~L~~L~Ls~n~l~~~~~~~ 143 (789)
+..++|++|++++|.+ . +|..+... |++|+|++|.+. ..+|..+. ++++|++|++++|++++. +|
T Consensus 40 ~~~~~L~~l~l~~n~l--~-~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~--~~ 112 (312)
T 1wwl_A 40 GGGRSLEYLLKRVDTE--A-DLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGT--AP 112 (312)
T ss_dssp EEEEECTTHHHHCCTT--C-CCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSC--CC
T ss_pred ccCCCceeEeeccccc--c-cHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccch--hH
Confidence 3344555555555555 1 44433322 555555555552 22333333 455555555555555532 23
Q ss_pred Hhh--CCCCCCCEEEcCCCCCCCC
Q 042537 144 RII--DKLPSLRTLNLEHCHLPPI 165 (789)
Q Consensus 144 ~~l--~~l~~L~~L~L~~n~l~~~ 165 (789)
..+ ..+++|++|++++|.+++.
T Consensus 113 ~~~~~~~l~~L~~L~Ls~N~l~~~ 136 (312)
T 1wwl_A 113 PPLLEATGPDLNILNLRNVSWATR 136 (312)
T ss_dssp CCSSSCCSCCCSEEEEESCBCSSS
T ss_pred HHHHHhcCCCccEEEccCCCCcch
Confidence 332 5555555555555555443
No 72
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.92 E-value=2.3e-24 Score=219.31 Aligned_cols=206 Identities=22% Similarity=0.249 Sum_probs=147.4
Q ss_pred CcEEEcCCCcCcccCCccccccCcccEEEccCCeeeeeCCcCccCCCCCcEEeCCCCcccccCchhhhhcCCCCcEEEcC
Q 042537 456 LAVLSLANNFFSGKIPKSMGFLHSIQTLSLYNNSLIGELPSFFKSCSQLILMDLGKNGLSGEIPTWIGEGLPKLVVLSLK 535 (789)
Q Consensus 456 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~l~~L~~L~L~ 535 (789)
.+.+++++++++ .+|..+. +++++|++++|.+++..+..|.++++|++|++++|.++ .+|..++..+++|++|+++
T Consensus 18 ~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~i~~~~~~~l~~L~~L~l~ 93 (270)
T 2o6q_A 18 KNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVT 93 (270)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCS-CCCTTTTSSCTTCCEEECC
T ss_pred CCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccC-eeChhhhcCCCCCCEEECC
Confidence 444555555555 2333332 34566666666665555555666666666666666665 5555554456667777777
Q ss_pred CCcccccCCCCccCCCcCceEeccCCcccccCCccccccccCcccCCCccccccCcccccccccccccccceeEEEeecc
Q 042537 536 SNKFHGNIPFQVCQLSYIQILDLSLNNISGIIPKCLNNFTGMAQKSSSNLAITSNYTFERQGIEFLESYVDNVVLTWKGS 615 (789)
Q Consensus 536 ~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 615 (789)
+|++.+..+..+..+++|++|++++|++++..+..|..+++|
T Consensus 94 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L-------------------------------------- 135 (270)
T 2o6q_A 94 DNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKL-------------------------------------- 135 (270)
T ss_dssp SSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTC--------------------------------------
T ss_pred CCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCC--------------------------------------
Confidence 776665555566677777777777777776666555555444
Q ss_pred ccccccccCceeEEEcccCccccccchhhhccccCcEEEccCCcceeecCcccccCCCCCEEeCCCCcccccCchhhhcC
Q 042537 616 QHEYRSTLGLVKILDFSMNKLSGTIPEEIMDLVGLVALNLSRNNLTGQITPKIDQLKSLDFLDLSQNQFVGGIPSSLCQL 695 (789)
Q Consensus 616 ~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l 695 (789)
+.|++++|++++..+..|..+++|++|+|++|++++..+..|..+++|+.|+|++|++++..+..|..+
T Consensus 136 -----------~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 204 (270)
T 2o6q_A 136 -----------TYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSL 204 (270)
T ss_dssp -----------CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTC
T ss_pred -----------CEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccc
Confidence 778888888886666668889999999999999997777778999999999999999998777788999
Q ss_pred CCCCeEeccCCcccccCCC
Q 042537 696 SRLSVMNLSYNNLSGKIPL 714 (789)
Q Consensus 696 ~~L~~L~ls~N~l~~~~p~ 714 (789)
++|+.|++++|++.+.++.
T Consensus 205 ~~L~~L~l~~N~~~c~c~~ 223 (270)
T 2o6q_A 205 EKLKMLQLQENPWDCTCNG 223 (270)
T ss_dssp TTCCEEECCSSCBCCSSSS
T ss_pred cCCCEEEecCCCeeCCCcc
Confidence 9999999999999888764
No 73
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.92 E-value=2.6e-24 Score=218.98 Aligned_cols=219 Identities=26% Similarity=0.362 Sum_probs=159.3
Q ss_pred CCCCceeeeEecCCCCcEEEEEcCCCCCCCCcccccCccccCCCCCCEEeCCCCCCCCCCCcccccCCCCCCEEecCCCc
Q 042537 32 RDCCYWRGVRCSNTTGHVIVLDLQVLVHSEPLKGTISPSLLKLYHLRHLDLSENDFSGSRIPEFIGSLNKLRYLSLSSAE 111 (789)
Q Consensus 32 ~~~c~w~gv~c~~~~~~v~~l~L~~~~~~~~l~~~l~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~ 111 (789)
.++|.|.|+.|. ..+.++.+++++ +.+. .+|..+. +++++|++++|+++.. .+..|.++++|++|++++|.
T Consensus 2 ~~~C~~~~~~C~-c~~~~~~l~~~~----~~l~-~ip~~~~--~~l~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~ 72 (270)
T 2o6q_A 2 EALCKKDGGVCS-CNNNKNSVDCSS----KKLT-AIPSNIP--ADTKKLDLQSNKLSSL-PSKAFHRLTKLRLLYLNDNK 72 (270)
T ss_dssp CCCBGGGTCSBE-EETTTTEEECTT----SCCS-SCCSCCC--TTCSEEECCSSCCSCC-CTTSSSSCTTCCEEECCSSC
T ss_pred CccCCCCCCCCE-eCCCCCEEEccC----CCCC-ccCCCCC--CCCCEEECcCCCCCee-CHHHhcCCCCCCEEECCCCc
Confidence 478999999985 334567788887 5555 4665554 5788999999988865 45678888999999999998
Q ss_pred CCCCCCccccCCCCCcEEeccCccCCCCcchHHhhCCCCCCCEEEcCCCCCCCCccccccccccCCCCCCeEEccCCCCC
Q 042537 112 FEGPIPSQLGNLSRLKYLDLSYINLNKSRDWLRIIDKLPSLRTLNLEHCHLPPIIPSDLLHLNFSTSSLGALYLFENSLS 191 (789)
Q Consensus 112 i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~~~L~~L~l~~n~l~ 191 (789)
++...+..|.++++|++|++++|+++.++ +..+..+++|++|++++|.+++..+. .+..+
T Consensus 73 l~~i~~~~~~~l~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~l~~n~l~~~~~~--~~~~l---------------- 132 (270)
T 2o6q_A 73 LQTLPAGIFKELKNLETLWVTDNKLQALP--IGVFDQLVNLAELRLDRNQLKSLPPR--VFDSL---------------- 132 (270)
T ss_dssp CSCCCTTTTSSCTTCCEEECCSSCCCCCC--TTTTTTCSSCCEEECCSSCCCCCCTT--TTTTC----------------
T ss_pred cCeeChhhhcCCCCCCEEECCCCcCCcCC--HhHcccccCCCEEECCCCccCeeCHH--HhCcC----------------
Confidence 88666667788888888888888888753 25677788888888888877765542 11222
Q ss_pred CCchhHHHhhcCCCcEEEccCCCCcccCchhhhcCCCCcEEECCCCCccEEecCCCcCcccchhhhhCCCCCCEEEccCC
Q 042537 192 SSIYPWLFNISSKLVVLDLDSNLLQGSLLEPFDRMVSLRTLYLGFNELEELFLGKNRLNGTINQWLSRMYKLDALSLSGN 271 (789)
Q Consensus 192 ~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n 271 (789)
++|++|++++|.+++..+..|..+++|+.|+++ +|.+++..+..|..+++|++|++++|
T Consensus 133 -----------~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~----------~n~l~~~~~~~~~~l~~L~~L~L~~N 191 (270)
T 2o6q_A 133 -----------TKLTYLSLGYNELQSLPKGVFDKLTSLKELRLY----------NNQLKRVPEGAFDKLTELKTLKLDNN 191 (270)
T ss_dssp -----------TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC----------SSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred -----------cCCCEEECCCCcCCccCHhHccCCcccceeEec----------CCcCcEeChhHhccCCCcCEEECCCC
Confidence 366777777777776666667777777777777 44455555566777778888888888
Q ss_pred CCCCccChhhhhcCCCCcEEEccCCccccc
Q 042537 272 SLTGVVTESVFSELSNLKALHLDDNSFTLK 301 (789)
Q Consensus 272 ~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~ 301 (789)
+++ .++...|..+++|+.|++++|++...
T Consensus 192 ~l~-~~~~~~~~~l~~L~~L~l~~N~~~c~ 220 (270)
T 2o6q_A 192 QLK-RVPEGAFDSLEKLKMLQLQENPWDCT 220 (270)
T ss_dssp CCS-CCCTTTTTTCTTCCEEECCSSCBCCS
T ss_pred cCC-cCCHHHhccccCCCEEEecCCCeeCC
Confidence 877 45555677788888888888877654
No 74
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.92 E-value=2.6e-24 Score=219.99 Aligned_cols=213 Identities=24% Similarity=0.217 Sum_probs=180.4
Q ss_pred CCCCEEEcCCCccccCCCcccccCCCCcEEEcCCCcCcccCCccccccCcccEEEccCCeeeeeCCcCccCCCCCcEEeC
Q 042537 430 HKLEFLDLSNNILSGRLPDCWMQFDRLAVLSLANNFFSGKIPKSMGFLHSIQTLSLYNNSLIGELPSFFKSCSQLILMDL 509 (789)
Q Consensus 430 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 509 (789)
+++++|++++|++++..+..|.++++|++|++++|++++..+..|..+++|++|++++|.+++..+..|.++++|++|++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 57889999999998777778999999999999999999888888999999999999999999888888999999999999
Q ss_pred CCCcccccCchhhhhcCCCCcEEEcCCCccccc-CCCCccCCCcCceEeccCCcccccCCccccccccCcccCCCccccc
Q 042537 510 GKNGLSGEIPTWIGEGLPKLVVLSLKSNKFHGN-IPFQVCQLSYIQILDLSLNNISGIIPKCLNNFTGMAQKSSSNLAIT 588 (789)
Q Consensus 510 s~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~ 588 (789)
++|.+. .++...+..+++|++|++++|++++. +|..+..+++|++|++++|++++..+..+..+..+..+.
T Consensus 108 ~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~------- 179 (276)
T 2z62_A 108 VETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLN------- 179 (276)
T ss_dssp TTSCCC-CSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCC-------
T ss_pred CCCCcc-ccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccc-------
Confidence 999998 45543344789999999999999864 588899999999999999999988777777776663211
Q ss_pred cCcccccccccccccccceeEEEeeccccccccccCceeEEEcccCccccccchhhhccccCcEEEccCCcceeecCccc
Q 042537 589 SNYTFERQGIEFLESYVDNVVLTWKGSQHEYRSTLGLVKILDFSMNKLSGTIPEEIMDLVGLVALNLSRNNLTGQITPKI 668 (789)
Q Consensus 589 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~ 668 (789)
..|++++|++++..+..+. ..+|++|+|++|++++..+..+
T Consensus 180 --------------------------------------l~L~ls~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~ 220 (276)
T 2z62_A 180 --------------------------------------LSLDLSLNPMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIF 220 (276)
T ss_dssp --------------------------------------EEEECCSSCCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTT
T ss_pred --------------------------------------eeeecCCCcccccCccccC-CCcccEEECCCCceeecCHhHh
Confidence 2799999999966555544 4589999999999997767778
Q ss_pred ccCCCCCEEeCCCCcccccCc
Q 042537 669 DQLKSLDFLDLSQNQFVGGIP 689 (789)
Q Consensus 669 ~~l~~L~~L~Ls~N~l~~~~p 689 (789)
..+++|+.|+|++|++++..|
T Consensus 221 ~~l~~L~~L~l~~N~~~c~c~ 241 (276)
T 2z62_A 221 DRLTSLQKIWLHTNPWDCSCP 241 (276)
T ss_dssp TTCCSCCEEECCSSCBCCCTT
T ss_pred cccccccEEEccCCcccccCC
Confidence 999999999999999997654
No 75
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.92 E-value=5.7e-25 Score=242.82 Aligned_cols=221 Identities=21% Similarity=0.129 Sum_probs=190.6
Q ss_pred cCCCCcEEEcCCCcCcccCCccccccCcccEEEccCCeeeeeCCcCccCCCCCcEEeCCCCcccccCchhhhhcCCCCcE
Q 042537 452 QFDRLAVLSLANNFFSGKIPKSMGFLHSIQTLSLYNNSLIGELPSFFKSCSQLILMDLGKNGLSGEIPTWIGEGLPKLVV 531 (789)
Q Consensus 452 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~l~~L~~ 531 (789)
.+++|+.|++++|.+++..|..|..+++|++|++++|.+++..| |..+++|++|++++|.++ .+| ..++|+.
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~-~l~-----~~~~L~~ 103 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQ-ELL-----VGPSIET 103 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEE-EEE-----ECTTCCE
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCC-CCC-----CCCCcCE
Confidence 34589999999999998888899999999999999999998776 899999999999999998 555 2489999
Q ss_pred EEcCCCcccccCCCCccCCCcCceEeccCCcccccCCccccccccCcccCCCccccccCcccccccccccccccceeEEE
Q 042537 532 LSLKSNKFHGNIPFQVCQLSYIQILDLSLNNISGIIPKCLNNFTGMAQKSSSNLAITSNYTFERQGIEFLESYVDNVVLT 611 (789)
Q Consensus 532 L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 611 (789)
|++++|.+++..+. .+++|+.|++++|.+++..|..+..+++|
T Consensus 104 L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L---------------------------------- 146 (487)
T 3oja_A 104 LHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRV---------------------------------- 146 (487)
T ss_dssp EECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSE----------------------------------
T ss_pred EECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCC----------------------------------
Confidence 99999999976654 46889999999999998888777666555
Q ss_pred eeccccccccccCceeEEEcccCccccccchhhh-ccccCcEEEccCCcceeecCcccccCCCCCEEeCCCCcccccCch
Q 042537 612 WKGSQHEYRSTLGLVKILDFSMNKLSGTIPEEIM-DLVGLVALNLSRNNLTGQITPKIDQLKSLDFLDLSQNQFVGGIPS 690 (789)
Q Consensus 612 ~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~-~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~ 690 (789)
+.|++++|.+++.+|..+. .+++|+.|+|++|.+++..+ +..+++|+.|+|++|.+++..|
T Consensus 147 ---------------~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~~~~- 208 (487)
T 3oja_A 147 ---------------QYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAFMGP- 208 (487)
T ss_dssp ---------------EEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC--CCCCTTCCEEECCSSCCCEECG-
T ss_pred ---------------CEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccccc--cccCCCCCEEECCCCCCCCCCH-
Confidence 9999999999998888886 79999999999999997633 4469999999999999997655
Q ss_pred hhhcCCCCCeEeccCCcccccCCCCCccccccccccCCCCCCCCC
Q 042537 691 SLCQLSRLSVMNLSYNNLSGKIPLGTQLQSFNASVYAGNPELCGL 735 (789)
Q Consensus 691 ~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~n~~lc~~ 735 (789)
.+..+++|+.|++++|++++..+....+..+....+.||++.|++
T Consensus 209 ~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~c~~ 253 (487)
T 3oja_A 209 EFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGT 253 (487)
T ss_dssp GGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBCHHH
T ss_pred hHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCCcCcc
Confidence 489999999999999999974333345566777789999999875
No 76
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.92 E-value=7.7e-27 Score=267.13 Aligned_cols=82 Identities=13% Similarity=0.089 Sum_probs=42.6
Q ss_pred ceeEEEcccCccccccchhh-hccccCcEEEccCCcceeecCc-ccccCCCCCEEeCCCCcccccCchhh-hcCCCCCeE
Q 042537 625 LVKILDFSMNKLSGTIPEEI-MDLVGLVALNLSRNNLTGQITP-KIDQLKSLDFLDLSQNQFVGGIPSSL-CQLSRLSVM 701 (789)
Q Consensus 625 ~L~~L~Ls~N~l~~~~p~~~-~~l~~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~L~Ls~N~l~~~~p~~l-~~l~~L~~L 701 (789)
+|+.|++++|.+++..+..+ ..+++|++|+|++|.+++..+. ....+++|+.|++++|+++......+ ..++.|+..
T Consensus 457 ~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~ 536 (594)
T 2p1m_B 457 KMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVE 536 (594)
T ss_dssp TCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEEEE
T ss_pred hccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEEE
Confidence 34666666666654444333 4456666666666666433322 23345666666666666643333333 345555554
Q ss_pred eccCC
Q 042537 702 NLSYN 706 (789)
Q Consensus 702 ~ls~N 706 (789)
.+..+
T Consensus 537 ~~~~~ 541 (594)
T 2p1m_B 537 VIDER 541 (594)
T ss_dssp EECSS
T ss_pred EecCC
Confidence 44444
No 77
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.91 E-value=1.1e-23 Score=216.16 Aligned_cols=206 Identities=21% Similarity=0.243 Sum_probs=147.0
Q ss_pred cccCCCCcEEEcCCCcCcccCCccccccCcccEEEccCCeeeeeCCcCccCCCCCcEEeCCCCcccccCchhhhhcCCCC
Q 042537 450 WMQFDRLAVLSLANNFFSGKIPKSMGFLHSIQTLSLYNNSLIGELPSFFKSCSQLILMDLGKNGLSGEIPTWIGEGLPKL 529 (789)
Q Consensus 450 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~l~~L 529 (789)
+.++++++.+++++|.++ .+|..+. +.++.|++++|.+++..+..|..+++|++|++++|.++ .++.. ..+++|
T Consensus 6 ~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~--~~l~~L 79 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQVD--GTLPVL 79 (290)
T ss_dssp EECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC-EEECC--SCCTTC
T ss_pred ccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccC-cccCC--CCCCcC
Confidence 455666666666666666 3443332 46677777777776666666777777777777777776 44433 256777
Q ss_pred cEEEcCCCcccccCCCCccCCCcCceEeccCCcccccCCccccccccCcccCCCccccccCcccccccccccccccceeE
Q 042537 530 VVLSLKSNKFHGNIPFQVCQLSYIQILDLSLNNISGIIPKCLNNFTGMAQKSSSNLAITSNYTFERQGIEFLESYVDNVV 609 (789)
Q Consensus 530 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 609 (789)
++|++++|+++ .+|..+..+++|++|++++|++++..+..|..+++|
T Consensus 80 ~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L-------------------------------- 126 (290)
T 1p9a_G 80 GTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGEL-------------------------------- 126 (290)
T ss_dssp CEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTC--------------------------------
T ss_pred CEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCC--------------------------------
Confidence 77777777776 556667777777778888777776666666655555
Q ss_pred EEeeccccccccccCceeEEEcccCccccccchhhhccccCcEEEccCCcceeecCcccccCCCCCEEeCCCCcccccCc
Q 042537 610 LTWKGSQHEYRSTLGLVKILDFSMNKLSGTIPEEIMDLVGLVALNLSRNNLTGQITPKIDQLKSLDFLDLSQNQFVGGIP 689 (789)
Q Consensus 610 ~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p 689 (789)
+.|++++|++++..+..|..+++|+.|+|++|++++..+..|..+++|+.|+|++|+++ .+|
T Consensus 127 -----------------~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip 188 (290)
T 1p9a_G 127 -----------------QELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIP 188 (290)
T ss_dssp -----------------CEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCC
T ss_pred -----------------CEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccC
Confidence 77888888887666667778888888888888888655556778888888888888888 567
Q ss_pred hhhhcCCCCCeEeccCCcccccC
Q 042537 690 SSLCQLSRLSVMNLSYNNLSGKI 712 (789)
Q Consensus 690 ~~l~~l~~L~~L~ls~N~l~~~~ 712 (789)
..+..+++|+.+++++|++.+.+
T Consensus 189 ~~~~~~~~L~~l~L~~Np~~C~c 211 (290)
T 1p9a_G 189 KGFFGSHLLPFAFLHGNPWLCNC 211 (290)
T ss_dssp TTTTTTCCCSEEECCSCCBCCSG
T ss_pred hhhcccccCCeEEeCCCCccCcC
Confidence 77777778888888888887655
No 78
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.90 E-value=2.3e-23 Score=212.13 Aligned_cols=220 Identities=20% Similarity=0.230 Sum_probs=158.1
Q ss_pred CEEEcCCCccccCCCcccccCCCCcEEEcCCCcCcccCCccccccCcccEEEccCCeeeeeCCcCccCCCCCcEEeCCCC
Q 042537 433 EFLDLSNNILSGRLPDCWMQFDRLAVLSLANNFFSGKIPKSMGFLHSIQTLSLYNNSLIGELPSFFKSCSQLILMDLGKN 512 (789)
Q Consensus 433 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n 512 (789)
..+++..+.+... .....+++|+.|++++|.++. + ..+..+++|++|++++|.+.+. ..+..+++|++|++++|
T Consensus 22 ~~l~l~~~~~~~~--~~~~~l~~L~~L~l~~~~i~~-~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n 95 (272)
T 3rfs_A 22 IKANLKKKSVTDA--VTQNELNSIDQIIANNSDIKS-V-QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGN 95 (272)
T ss_dssp HHHHHTCSCTTSE--ECHHHHTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTS
T ss_pred HHHHhcCcccccc--cccccccceeeeeeCCCCccc-c-cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCC
Confidence 3344444444322 224455666666666666652 2 2355666677777777766642 35666777777777777
Q ss_pred cccccCchhhhhcCCCCcEEEcCCCcccccCCCCccCCCcCceEeccCCcccccCCccccccccCcccCCCccccccCcc
Q 042537 513 GLSGEIPTWIGEGLPKLVVLSLKSNKFHGNIPFQVCQLSYIQILDLSLNNISGIIPKCLNNFTGMAQKSSSNLAITSNYT 592 (789)
Q Consensus 513 ~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~ 592 (789)
.++ .++...+..+++|++|++++|++++..+..+..+++|++|++++|++++..+..+..+++|
T Consensus 96 ~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L--------------- 159 (272)
T 3rfs_A 96 QLQ-SLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNL--------------- 159 (272)
T ss_dssp CCC-CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC---------------
T ss_pred ccC-ccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccC---------------
Confidence 776 4444443467777777777777776666667778888888888888876666555555554
Q ss_pred cccccccccccccceeEEEeeccccccccccCceeEEEcccCccccccchhhhccccCcEEEccCCcceeecCcccccCC
Q 042537 593 FERQGIEFLESYVDNVVLTWKGSQHEYRSTLGLVKILDFSMNKLSGTIPEEIMDLVGLVALNLSRNNLTGQITPKIDQLK 672 (789)
Q Consensus 593 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~ 672 (789)
+.|++++|++++..+..|+.+++|++|++++|++++..|..+..++
T Consensus 160 ----------------------------------~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 205 (272)
T 3rfs_A 160 ----------------------------------TELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLT 205 (272)
T ss_dssp ----------------------------------CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCT
T ss_pred ----------------------------------CEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCc
Confidence 7888888888877777788999999999999999988887889999
Q ss_pred CCCEEeCCCCcccccCchhhhcCCCCCeEeccCCcccccCCCC
Q 042537 673 SLDFLDLSQNQFVGGIPSSLCQLSRLSVMNLSYNNLSGKIPLG 715 (789)
Q Consensus 673 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~ 715 (789)
+|+.|++++|.+.+.. +.|+.++++.|.++|.+|..
T Consensus 206 ~L~~L~l~~N~~~~~~-------~~l~~l~~~~n~~~g~ip~~ 241 (272)
T 3rfs_A 206 SLQYIWLHDNPWDCTC-------PGIRYLSEWINKHSGVVRNS 241 (272)
T ss_dssp TCCEEECCSSCBCCCT-------TTTHHHHHHHHHTGGGBBCT
T ss_pred CCCEEEccCCCccccC-------cHHHHHHHHHHhCCCcccCc
Confidence 9999999999988654 46889999999999999964
No 79
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.90 E-value=2.5e-23 Score=211.83 Aligned_cols=185 Identities=23% Similarity=0.233 Sum_probs=94.3
Q ss_pred cccCcccEEEccCCeeeeeCCcCccCCCCCcEEeCCCCcccccCchhhhhcCCCCcEEEcCCCcccccCCCCccCCCcCc
Q 042537 475 GFLHSIQTLSLYNNSLIGELPSFFKSCSQLILMDLGKNGLSGEIPTWIGEGLPKLVVLSLKSNKFHGNIPFQVCQLSYIQ 554 (789)
Q Consensus 475 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 554 (789)
..+++|+.|++++|.+... ..+..+++|++|++++|.+. .++ .+. .+++|++|++++|++++..+..+..+++|+
T Consensus 38 ~~l~~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~-~~~-~l~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 112 (272)
T 3rfs_A 38 NELNSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLH-DIS-ALK-ELTNLTYLILTGNQLQSLPNGVFDKLTNLK 112 (272)
T ss_dssp HHHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCC-CCG-GGT-TCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred ccccceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCC-Cch-hhc-CCCCCCEEECCCCccCccChhHhcCCcCCC
Confidence 3445555555555554421 23445555555555555554 232 222 455555555555555544444455555555
Q ss_pred eEeccCCcccccCCccccccccCcccCCCccccccCcccccccccccccccceeEEEeeccccccccccCceeEEEcccC
Q 042537 555 ILDLSLNNISGIIPKCLNNFTGMAQKSSSNLAITSNYTFERQGIEFLESYVDNVVLTWKGSQHEYRSTLGLVKILDFSMN 634 (789)
Q Consensus 555 ~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N 634 (789)
+|++++|++++..+..|..+++| +.|++++|
T Consensus 113 ~L~L~~n~l~~~~~~~~~~l~~L-------------------------------------------------~~L~L~~n 143 (272)
T 3rfs_A 113 ELVLVENQLQSLPDGVFDKLTNL-------------------------------------------------TYLNLAHN 143 (272)
T ss_dssp EEECTTSCCCCCCTTTTTTCTTC-------------------------------------------------CEEECCSS
T ss_pred EEECCCCcCCccCHHHhccCCCC-------------------------------------------------CEEECCCC
Confidence 55555555554444444333333 55555555
Q ss_pred ccccccchhhhccccCcEEEccCCcceeecCcccccCCCCCEEeCCCCcccccCchhhhcCCCCCeEeccCCcccccCC
Q 042537 635 KLSGTIPEEIMDLVGLVALNLSRNNLTGQITPKIDQLKSLDFLDLSQNQFVGGIPSSLCQLSRLSVMNLSYNNLSGKIP 713 (789)
Q Consensus 635 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p 713 (789)
++++..+..|+.+++|++|++++|++++..+..++.+++|+.|++++|++++..|..+..+++|++|++++|++.|.+|
T Consensus 144 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 222 (272)
T 3rfs_A 144 QLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 222 (272)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred ccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccccCc
Confidence 5554444445555555555555555554444444555555555555555555555445555555555555555555555
No 80
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.89 E-value=1.9e-22 Score=206.88 Aligned_cols=201 Identities=21% Similarity=0.168 Sum_probs=172.0
Q ss_pred CCCCEEEcCCCccccCCCcccccCCCCcEEEcCCCcCcccCCccccccCcccEEEccCCeeeeeCCcCccCCCCCcEEeC
Q 042537 430 HKLEFLDLSNNILSGRLPDCWMQFDRLAVLSLANNFFSGKIPKSMGFLHSIQTLSLYNNSLIGELPSFFKSCSQLILMDL 509 (789)
Q Consensus 430 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 509 (789)
+++++++++++.++ .+|..+. ++++.|++++|.+++..+..|..+++|++|++++|.+++..+. ..+++|++|++
T Consensus 10 ~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~~L~L 84 (290)
T 1p9a_G 10 ASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLGTLDL 84 (290)
T ss_dssp TTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCCEEEC
T ss_pred CCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCCEEEC
Confidence 67888888888888 4555443 6788999999999888888888999999999999998876543 67889999999
Q ss_pred CCCcccccCchhhhhcCCCCcEEEcCCCcccccCCCCccCCCcCceEeccCCcccccCCccccccccCcccCCCcccccc
Q 042537 510 GKNGLSGEIPTWIGEGLPKLVVLSLKSNKFHGNIPFQVCQLSYIQILDLSLNNISGIIPKCLNNFTGMAQKSSSNLAITS 589 (789)
Q Consensus 510 s~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~ 589 (789)
++|+++ .+|..+. .+++|++|++++|++++..+..|..+++|++|++++|++++..+..|..+++|
T Consensus 85 s~N~l~-~l~~~~~-~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L------------ 150 (290)
T 1p9a_G 85 SHNQLQ-SLPLLGQ-TLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKL------------ 150 (290)
T ss_dssp CSSCCS-SCCCCTT-TCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTC------------
T ss_pred CCCcCC-cCchhhc-cCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCC------------
Confidence 999998 8887665 78999999999999998777889999999999999999998777766666555
Q ss_pred CcccccccccccccccceeEEEeeccccccccccCceeEEEcccCccccccchhhhccccCcEEEccCCcceeecCcccc
Q 042537 590 NYTFERQGIEFLESYVDNVVLTWKGSQHEYRSTLGLVKILDFSMNKLSGTIPEEIMDLVGLVALNLSRNNLTGQITPKID 669 (789)
Q Consensus 590 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~ 669 (789)
+.|++++|++++..+..|..+++|+.|+|++|+++ .+|..+.
T Consensus 151 -------------------------------------~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~ 192 (290)
T 1p9a_G 151 -------------------------------------EKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFF 192 (290)
T ss_dssp -------------------------------------CEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTT
T ss_pred -------------------------------------CEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhc
Confidence 89999999999766677889999999999999999 7888888
Q ss_pred cCCCCCEEeCCCCccccc
Q 042537 670 QLKSLDFLDLSQNQFVGG 687 (789)
Q Consensus 670 ~l~~L~~L~Ls~N~l~~~ 687 (789)
.+++|+.|+|++|.+...
T Consensus 193 ~~~~L~~l~L~~Np~~C~ 210 (290)
T 1p9a_G 193 GSHLLPFAFLHGNPWLCN 210 (290)
T ss_dssp TTCCCSEEECCSCCBCCS
T ss_pred ccccCCeEEeCCCCccCc
Confidence 899999999999999753
No 81
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.89 E-value=5.8e-24 Score=226.33 Aligned_cols=257 Identities=20% Similarity=0.200 Sum_probs=187.2
Q ss_pred EEcCCCcCccccchhcccCCCCCCEEEcCCCccccCCC----cccccCC-CCcEEEcCCCcCcccCCcccccc-----Cc
Q 042537 410 LNLSRNKFSESISFLCSINGHKLEFLDLSNNILSGRLP----DCWMQFD-RLAVLSLANNFFSGKIPKSMGFL-----HS 479 (789)
Q Consensus 410 L~l~~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~----~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l-----~~ 479 (789)
++++.|.+++.++...... ++|++|++++|.+++..+ .+|.+++ +|++|++++|.+++..+..+..+ ++
T Consensus 3 ~~ls~n~~~~~~~~~~~~~-~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIP-HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EECCCCTTCCHHHHHHTSC-TTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred cccccccchHHHHHHHhCC-CCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 5667777777666554432 559999999999887666 6778888 89999999999987777777665 88
Q ss_pred ccEEEccCCeeeeeCCcC----ccCC-CCCcEEeCCCCcccccCchhhhh---c-CCCCcEEEcCCCcccccCC----CC
Q 042537 480 IQTLSLYNNSLIGELPSF----FKSC-SQLILMDLGKNGLSGEIPTWIGE---G-LPKLVVLSLKSNKFHGNIP----FQ 546 (789)
Q Consensus 480 L~~L~L~~n~l~~~~~~~----~~~l-~~L~~L~ls~n~l~~~~p~~~~~---~-l~~L~~L~L~~n~l~~~~~----~~ 546 (789)
|++|++++|.+++..+.. +..+ ++|++|++++|++++..+..+.. . .++|++|++++|++.+..+ ..
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~ 161 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI 161 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence 999999999988665553 4444 78999999999998555544432 2 3589999999999885333 23
Q ss_pred ccCCC-cCceEeccCCcccccCCccccccccCcccCCCccccccCcccccccccccccccceeEEEeecccccccccc-C
Q 042537 547 VCQLS-YIQILDLSLNNISGIIPKCLNNFTGMAQKSSSNLAITSNYTFERQGIEFLESYVDNVVLTWKGSQHEYRSTL-G 624 (789)
Q Consensus 547 ~~~l~-~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~ 624 (789)
+..++ +|++|++++|++++..+..+...- ... +
T Consensus 162 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l---------------------------------------------~~~~~ 196 (362)
T 3goz_A 162 LAAIPANVNSLNLRGNNLASKNCAELAKFL---------------------------------------------ASIPA 196 (362)
T ss_dssp HHTSCTTCCEEECTTSCGGGSCHHHHHHHH---------------------------------------------HTSCT
T ss_pred HhcCCccccEeeecCCCCchhhHHHHHHHH---------------------------------------------HhCCC
Confidence 34454 899999999998877665443220 111 2
Q ss_pred ceeEEEcccCccccc----cchhhhcc-ccCcEEEccCCcceeecC----cccccCCCCCEEeCCCCcccccCc------
Q 042537 625 LVKILDFSMNKLSGT----IPEEIMDL-VGLVALNLSRNNLTGQIT----PKIDQLKSLDFLDLSQNQFVGGIP------ 689 (789)
Q Consensus 625 ~L~~L~Ls~N~l~~~----~p~~~~~l-~~L~~L~Ls~N~l~~~~p----~~~~~l~~L~~L~Ls~N~l~~~~p------ 689 (789)
.|+.||+++|.+++. ++..+... ++|++|+|++|++++..+ ..+..+++|+.|+|++|.+.+..+
T Consensus 197 ~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l 276 (362)
T 3goz_A 197 SVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKAL 276 (362)
T ss_dssp TCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHH
T ss_pred CCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHH
Confidence 458999999999863 55566663 589999999999986544 334677899999999999654443
Q ss_pred -hhhhcCCCCCeEeccCCcccccC
Q 042537 690 -SSLCQLSRLSVMNLSYNNLSGKI 712 (789)
Q Consensus 690 -~~l~~l~~L~~L~ls~N~l~~~~ 712 (789)
..+..+++|+.||+++|++.+..
T Consensus 277 ~~~~~~l~~L~~LdL~~N~l~~~~ 300 (362)
T 3goz_A 277 GAAFPNIQKIILVDKNGKEIHPSH 300 (362)
T ss_dssp HTTSTTCCEEEEECTTSCBCCGGG
T ss_pred HHHhccCCceEEEecCCCcCCCcc
Confidence 35667788999999999987653
No 82
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.88 E-value=2.1e-22 Score=200.92 Aligned_cols=75 Identities=19% Similarity=0.131 Sum_probs=41.4
Q ss_pred EEEcccCccccccchhhhccccCcEEEccCCc-ceeecCcccccC-CCCCEEeCCCCcccccCchhhhcCCCCCeEeccC
Q 042537 628 ILDFSMNKLSGTIPEEIMDLVGLVALNLSRNN-LTGQITPKIDQL-KSLDFLDLSQNQFVGGIPSSLCQLSRLSVMNLSY 705 (789)
Q Consensus 628 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~-l~~~~p~~~~~l-~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~ 705 (789)
.|++++|+++...+..|.. ++|++|+|++|+ +++..+..|..+ ++|+.|++++|++++..+. .+++|+.|++++
T Consensus 160 ~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~---~~~~L~~L~l~~ 235 (239)
T 2xwt_C 160 TLKLYNNGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK---GLEHLKELIARN 235 (239)
T ss_dssp EEECCSCCCCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT---TCTTCSEEECTT
T ss_pred EEEcCCCCCcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh---HhccCceeeccC
Confidence 5555555555222222333 566666666663 665545556666 6666666666666643332 445666666665
Q ss_pred C
Q 042537 706 N 706 (789)
Q Consensus 706 N 706 (789)
+
T Consensus 236 ~ 236 (239)
T 2xwt_C 236 T 236 (239)
T ss_dssp C
T ss_pred c
Confidence 4
No 83
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.88 E-value=5.1e-24 Score=229.25 Aligned_cols=235 Identities=18% Similarity=0.231 Sum_probs=180.5
Q ss_pred CCCCEEEcCCCccccCCC----cccccCCCCcEEEcCCCc---CcccCCccc-------cccCcccEEEccCCeeee---
Q 042537 430 HKLEFLDLSNNILSGRLP----DCWMQFDRLAVLSLANNF---FSGKIPKSM-------GFLHSIQTLSLYNNSLIG--- 492 (789)
Q Consensus 430 ~~L~~L~Ls~n~l~~~~~----~~~~~l~~L~~L~L~~n~---l~~~~~~~~-------~~l~~L~~L~L~~n~l~~--- 492 (789)
++|++|++++|.++...+ ..+..+++|+.|++++|. +.+.+|..+ ..+++|++|++++|.+..
T Consensus 32 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~ 111 (386)
T 2ca6_A 32 DSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQ 111 (386)
T ss_dssp SCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTH
T ss_pred CCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHH
Confidence 678888888888876533 346678889999998864 444455444 678889999999999886
Q ss_pred -eCCcCccCCCCCcEEeCCCCcccccCchhhhh---cC---------CCCcEEEcCCCccc-ccCC---CCccCCCcCce
Q 042537 493 -ELPSFFKSCSQLILMDLGKNGLSGEIPTWIGE---GL---------PKLVVLSLKSNKFH-GNIP---FQVCQLSYIQI 555 (789)
Q Consensus 493 -~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~---~l---------~~L~~L~L~~n~l~-~~~~---~~~~~l~~L~~ 555 (789)
.++..+..+++|++|++++|.+.+..+..+.. .+ ++|++|++++|+++ +.++ ..+..+++|++
T Consensus 112 ~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~ 191 (386)
T 2ca6_A 112 EPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHT 191 (386)
T ss_dssp HHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCE
T ss_pred HHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCE
Confidence 45667788899999999999887444433332 22 89999999999987 2333 35667889999
Q ss_pred EeccCCccccc-----CCccccccccCcccCCCccccccCcccccccccccccccceeEEEeeccccccccccCceeEEE
Q 042537 556 LDLSLNNISGI-----IPKCLNNFTGMAQKSSSNLAITSNYTFERQGIEFLESYVDNVVLTWKGSQHEYRSTLGLVKILD 630 (789)
Q Consensus 556 L~Ls~N~l~~~-----~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~ 630 (789)
|++++|+++.. .|..+.. ++.|+.|+
T Consensus 192 L~L~~n~l~~~g~~~l~~~~l~~-------------------------------------------------~~~L~~L~ 222 (386)
T 2ca6_A 192 VKMVQNGIRPEGIEHLLLEGLAY-------------------------------------------------CQELKVLD 222 (386)
T ss_dssp EECCSSCCCHHHHHHHHHTTGGG-------------------------------------------------CTTCCEEE
T ss_pred EECcCCCCCHhHHHHHHHHHhhc-------------------------------------------------CCCccEEE
Confidence 99999988721 2223333 34458999
Q ss_pred cccCccc----cccchhhhccccCcEEEccCCcceee----cCccccc--CCCCCEEeCCCCcccc----cCchhh-hcC
Q 042537 631 FSMNKLS----GTIPEEIMDLVGLVALNLSRNNLTGQ----ITPKIDQ--LKSLDFLDLSQNQFVG----GIPSSL-CQL 695 (789)
Q Consensus 631 Ls~N~l~----~~~p~~~~~l~~L~~L~Ls~N~l~~~----~p~~~~~--l~~L~~L~Ls~N~l~~----~~p~~l-~~l 695 (789)
|++|.++ +.+|..+..+++|++|+|++|++++. ++..+.. +++|+.|+|++|.+++ .+|..+ .++
T Consensus 223 Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l 302 (386)
T 2ca6_A 223 LQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKM 302 (386)
T ss_dssp CCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHC
T ss_pred CcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcC
Confidence 9999996 57888899999999999999999876 5666643 8999999999999998 477777 678
Q ss_pred CCCCeEeccCCcccccCC
Q 042537 696 SRLSVMNLSYNNLSGKIP 713 (789)
Q Consensus 696 ~~L~~L~ls~N~l~~~~p 713 (789)
++|++|++++|++++..|
T Consensus 303 ~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 303 PDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp TTCCEEECTTSBSCTTSH
T ss_pred CCceEEEccCCcCCcchh
Confidence 999999999999987765
No 84
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.88 E-value=3.7e-22 Score=200.60 Aligned_cols=191 Identities=23% Similarity=0.223 Sum_probs=117.9
Q ss_pred CCcEEeCCCCcccccCchhhhhcCCCCcEEEcCCCcccccCCCCccCCCcCceEeccCCcccccCCccccccccCcccCC
Q 042537 503 QLILMDLGKNGLSGEIPTWIGEGLPKLVVLSLKSNKFHGNIPFQVCQLSYIQILDLSLNNISGIIPKCLNNFTGMAQKSS 582 (789)
Q Consensus 503 ~L~~L~ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~ 582 (789)
+++.|++++|++.+..+..+ .++++|++|++++|++++..+..+..+++|++|++++|++++..+..|..+++|
T Consensus 36 ~l~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L----- 109 (251)
T 3m19_A 36 DTEKLDLQSTGLATLSDATF-RGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQL----- 109 (251)
T ss_dssp TCCEEECTTSCCCCCCTTTT-TTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTC-----
T ss_pred CCCEEEccCCCcCccCHhHh-cCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCC-----
Confidence 44455555555542222222 245555555555555555555555666666666666666665555555444444
Q ss_pred CccccccCcccccccccccccccceeEEEeeccccccccccCceeEEEcccCccccccchhhhccccCcEEEccCCccee
Q 042537 583 SNLAITSNYTFERQGIEFLESYVDNVVLTWKGSQHEYRSTLGLVKILDFSMNKLSGTIPEEIMDLVGLVALNLSRNNLTG 662 (789)
Q Consensus 583 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 662 (789)
+.|++++|++++..+..|..+++|++|+|++|++++
T Consensus 110 --------------------------------------------~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 145 (251)
T 3m19_A 110 --------------------------------------------DKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQS 145 (251)
T ss_dssp --------------------------------------------CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred --------------------------------------------CEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCc
Confidence 677777777776666667788888888888888886
Q ss_pred ecCcccccCCCCCEEeCCCCcccccCchhhhcCCCCCeEeccCCcccccCCCCCccccc------cccccCCCCCCCCCC
Q 042537 663 QITPKIDQLKSLDFLDLSQNQFVGGIPSSLCQLSRLSVMNLSYNNLSGKIPLGTQLQSF------NASVYAGNPELCGLP 736 (789)
Q Consensus 663 ~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~------~~~~~~~n~~lc~~~ 736 (789)
..+..|+.+++|+.|+|++|++++..+..|..+++|++|++++|++.|..+....+..+ ......|+ ..|+.+
T Consensus 146 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~ 224 (251)
T 3m19_A 146 IPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCSRCEILYLSQWIRENSNKVKDGTGQ-NLHESP 224 (251)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTTSTTHHHHHHHHHHSGGGBCC--------CCG
T ss_pred cCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCCccccHHHHHHHHhcccceeeccCc-ccccCC
Confidence 66667888888888999999888877778888888999999999988774432211111 11112333 356666
Q ss_pred CCCCCCCC
Q 042537 737 LRNKCPDE 744 (789)
Q Consensus 737 l~~~c~~~ 744 (789)
....|..+
T Consensus 225 ~~~~C~~~ 232 (251)
T 3m19_A 225 DGVTCSDG 232 (251)
T ss_dssp GGCBBTTS
T ss_pred CcCccCCC
Confidence 66667654
No 85
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.87 E-value=3.3e-22 Score=199.56 Aligned_cols=198 Identities=16% Similarity=0.159 Sum_probs=168.6
Q ss_pred CCCCEEEcCCCccccCCCcccccCCCCcEEEcCCCc-CcccCCccccccCcccEEEccC-CeeeeeCCcCccCCCCCcEE
Q 042537 430 HKLEFLDLSNNILSGRLPDCWMQFDRLAVLSLANNF-FSGKIPKSMGFLHSIQTLSLYN-NSLIGELPSFFKSCSQLILM 507 (789)
Q Consensus 430 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L 507 (789)
+++++|++++|++++..+..|.++++|++|++++|+ ++...+..|..+++|++|++++ |.+++..+..|.++++|++|
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 578999999999987777789999999999999997 8877777899999999999998 99998888889999999999
Q ss_pred eCCCCcccccCchhhhhcCCCCc---EEEcCCC-cccccCCCCccCCCcCc-eEeccCCcccccCCccccccccCcccCC
Q 042537 508 DLGKNGLSGEIPTWIGEGLPKLV---VLSLKSN-KFHGNIPFQVCQLSYIQ-ILDLSLNNISGIIPKCLNNFTGMAQKSS 582 (789)
Q Consensus 508 ~ls~n~l~~~~p~~~~~~l~~L~---~L~L~~n-~l~~~~~~~~~~l~~L~-~L~Ls~N~l~~~~p~~~~~l~~L~~l~~ 582 (789)
++++|+++ .+|. + ..+++|+ +|++++| ++++..+..|.++++|+ .|++++|+++...+..|.. +
T Consensus 111 ~l~~n~l~-~lp~-~-~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~------- 179 (239)
T 2xwt_C 111 GIFNTGLK-MFPD-L-TKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-T------- 179 (239)
T ss_dssp EEEEECCC-SCCC-C-TTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-C-------
T ss_pred eCCCCCCc-cccc-c-ccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-C-------
Confidence 99999998 5886 3 3688888 9999999 99987777899999999 9999999998544433332 2
Q ss_pred CccccccCcccccccccccccccceeEEEeeccccccccccCceeEEEcccCc-cccccchhhhcc-ccCcEEEccCCcc
Q 042537 583 SNLAITSNYTFERQGIEFLESYVDNVVLTWKGSQHEYRSTLGLVKILDFSMNK-LSGTIPEEIMDL-VGLVALNLSRNNL 660 (789)
Q Consensus 583 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~p~~~~~l-~~L~~L~Ls~N~l 660 (789)
.|+.|++++|+ +++..+..|..+ ++|+.|++++|++
T Consensus 180 ------------------------------------------~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l 217 (239)
T 2xwt_C 180 ------------------------------------------KLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSV 217 (239)
T ss_dssp ------------------------------------------EEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCC
T ss_pred ------------------------------------------CCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCcc
Confidence 35999999995 997777889999 9999999999999
Q ss_pred eeecCcccccCCCCCEEeCCCCc
Q 042537 661 TGQITPKIDQLKSLDFLDLSQNQ 683 (789)
Q Consensus 661 ~~~~p~~~~~l~~L~~L~Ls~N~ 683 (789)
++ +|.. .+++|+.|+++++.
T Consensus 218 ~~-l~~~--~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 218 TA-LPSK--GLEHLKELIARNTW 237 (239)
T ss_dssp CC-CCCT--TCTTCSEEECTTC-
T ss_pred cc-CChh--HhccCceeeccCcc
Confidence 94 5544 67899999998874
No 86
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.87 E-value=7e-23 Score=212.99 Aligned_cols=206 Identities=21% Similarity=0.144 Sum_probs=117.8
Q ss_pred CCCCEEEcCCCccccCCCccc--ccCCCCcEEEcCCCcCcccCC----ccccccCcccEEEccCCeeeeeCCcCccCCCC
Q 042537 430 HKLEFLDLSNNILSGRLPDCW--MQFDRLAVLSLANNFFSGKIP----KSMGFLHSIQTLSLYNNSLIGELPSFFKSCSQ 503 (789)
Q Consensus 430 ~~L~~L~Ls~n~l~~~~~~~~--~~l~~L~~L~L~~n~l~~~~~----~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 503 (789)
++|++|++++|.+++..|..+ ..+++|++|++++|.+++..+ ..+..+++|++|++++|++.+..+..|..+++
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~ 170 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPA 170 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTT
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCC
Confidence 446666666666665555555 555666666666666554333 22234555555555555555554455555555
Q ss_pred CcEEeCCCCcccccCchhhhhcCCCCcEEEcCCCcccccCCCCccCCCcCceEeccCCcccccCCc---cccccccCccc
Q 042537 504 LILMDLGKNGLSGEIPTWIGEGLPKLVVLSLKSNKFHGNIPFQVCQLSYIQILDLSLNNISGIIPK---CLNNFTGMAQK 580 (789)
Q Consensus 504 L~~L~ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~---~~~~l~~L~~l 580 (789)
|++|++++|++.+... -..+..+..+++|++|++++|+++...+. .+..
T Consensus 171 L~~L~Ls~N~l~~~~~---------------------~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~------- 222 (310)
T 4glp_A 171 LTSLDLSDNPGLGERG---------------------LMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAA------- 222 (310)
T ss_dssp CCEEECCSCTTCHHHH---------------------HHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHH-------
T ss_pred CCEEECCCCCCccchh---------------------hhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhc-------
Confidence 5555555555432100 00112234556666666666665421110 0112
Q ss_pred CCCccccccCcccccccccccccccceeEEEeeccccccccccCceeEEEcccCccccccchhhhcc---ccCcEEEccC
Q 042537 581 SSSNLAITSNYTFERQGIEFLESYVDNVVLTWKGSQHEYRSTLGLVKILDFSMNKLSGTIPEEIMDL---VGLVALNLSR 657 (789)
Q Consensus 581 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l---~~L~~L~Ls~ 657 (789)
++.|++||+++|++++..|..+..+ ++|++|+|++
T Consensus 223 ------------------------------------------l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~ 260 (310)
T 4glp_A 223 ------------------------------------------GVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSF 260 (310)
T ss_dssp ------------------------------------------TCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCS
T ss_pred ------------------------------------------CCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCC
Confidence 2334667777777776666666555 5788888888
Q ss_pred CcceeecCcccccCCCCCEEeCCCCcccccCchhhhcCCCCCeEeccCCcccc
Q 042537 658 NNLTGQITPKIDQLKSLDFLDLSQNQFVGGIPSSLCQLSRLSVMNLSYNNLSG 710 (789)
Q Consensus 658 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~ 710 (789)
|+++ .+|..+. ++|+.|||++|++++. |. +..+++|++|++++|+++.
T Consensus 261 N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 261 AGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp SCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTSC
T ss_pred CCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCCC
Confidence 8887 5666654 6888888888888754 33 5677888888888888753
No 87
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.87 E-value=9.4e-23 Score=212.03 Aligned_cols=179 Identities=16% Similarity=0.117 Sum_probs=135.5
Q ss_pred CCCEEEccCCcccccCC----C--CCCCCcEEEcCCCcCccccchhcc-cCCCCCCEEEcCCCccccCCC----cccccC
Q 042537 385 FSSSIDISSNYFEGLIP----P--LPSNASVLNLSRNKFSESISFLCS-INGHKLEFLDLSNNILSGRLP----DCWMQF 453 (789)
Q Consensus 385 ~L~~L~l~~n~l~~~~~----~--~~~~L~~L~l~~n~i~~~~~~~~~-~~~~~L~~L~Ls~n~l~~~~~----~~~~~l 453 (789)
.++.+.+.++.+..... . ..++|+.|++++|.+.+..+.... ...++|++|++++|.+++..+ ..+..+
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~ 144 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK 144 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence 36778888877653211 0 135699999999999987776542 334899999999999997655 345679
Q ss_pred CCCcEEEcCCCcCcccCCccccccCcccEEEccCCeeeee---C-CcCccCCCCCcEEeCCCCcccccCchh---hhhcC
Q 042537 454 DRLAVLSLANNFFSGKIPKSMGFLHSIQTLSLYNNSLIGE---L-PSFFKSCSQLILMDLGKNGLSGEIPTW---IGEGL 526 (789)
Q Consensus 454 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~---~-~~~~~~l~~L~~L~ls~n~l~~~~p~~---~~~~l 526 (789)
++|++|++++|++.+..+..|..+++|++|++++|++.+. . +..+..+++|++|++++|+++ .++.. ++..+
T Consensus 145 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~l 223 (310)
T 4glp_A 145 PGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAAAG 223 (310)
T ss_dssp SCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHHHT
T ss_pred cCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHhcC
Confidence 9999999999999988889999999999999999997642 2 233478899999999999997 44442 44467
Q ss_pred CCCcEEEcCCCcccccCCCCccCC---CcCceEeccCCccc
Q 042537 527 PKLVVLSLKSNKFHGNIPFQVCQL---SYIQILDLSLNNIS 564 (789)
Q Consensus 527 ~~L~~L~L~~n~l~~~~~~~~~~l---~~L~~L~Ls~N~l~ 564 (789)
++|++|++++|++.+..|..+..+ ++|++|++++|+++
T Consensus 224 ~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~ 264 (310)
T 4glp_A 224 VQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE 264 (310)
T ss_dssp CCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC
T ss_pred CCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC
Confidence 888888888888887666666554 46666666666665
No 88
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.87 E-value=1.2e-21 Score=202.90 Aligned_cols=193 Identities=25% Similarity=0.386 Sum_probs=113.6
Q ss_pred cCCCCcEEEcCCCcCcccCCccccccCcccEEEccCCeeeeeCCcCccCCCCCcEEeCCCCcccccCchhhhhcCCCCcE
Q 042537 452 QFDRLAVLSLANNFFSGKIPKSMGFLHSIQTLSLYNNSLIGELPSFFKSCSQLILMDLGKNGLSGEIPTWIGEGLPKLVV 531 (789)
Q Consensus 452 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~l~~L~~ 531 (789)
.+++|+.|++++|.++. ++ .+..+++|++|++++|.+.+..+ +..+++|++|++++|+++ .++ .+. .+++|++
T Consensus 39 ~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~-~~~-~~~-~l~~L~~ 111 (308)
T 1h6u_A 39 DLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLK-NVS-AIA-GLQSIKT 111 (308)
T ss_dssp HHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCS-CCG-GGT-TCTTCCE
T ss_pred HcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCC-Cch-hhc-CCCCCCE
Confidence 34445555555555542 22 34455555555555555553332 555555555555555555 333 222 4566666
Q ss_pred EEcCCCcccccCCCCccCCCcCceEeccCCcccccCCccccccccCcccCCCccccccCcccccccccccccccceeEEE
Q 042537 532 LSLKSNKFHGNIPFQVCQLSYIQILDLSLNNISGIIPKCLNNFTGMAQKSSSNLAITSNYTFERQGIEFLESYVDNVVLT 611 (789)
Q Consensus 532 L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 611 (789)
|++++|++++. + .+..+++|+.|++++|.+++..+ +..++
T Consensus 112 L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~------------------------------------ 151 (308)
T 1h6u_A 112 LDLTSTQITDV-T-PLAGLSNLQVLYLDLNQITNISP--LAGLT------------------------------------ 151 (308)
T ss_dssp EECTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG--GGGCT------------------------------------
T ss_pred EECCCCCCCCc-h-hhcCCCCCCEEECCCCccCcCcc--ccCCC------------------------------------
Confidence 66666666542 2 25566666666666666654322 33322
Q ss_pred eeccccccccccCceeEEEcccCccccccchhhhccccCcEEEccCCcceeecCcccccCCCCCEEeCCCCcccccCchh
Q 042537 612 WKGSQHEYRSTLGLVKILDFSMNKLSGTIPEEIMDLVGLVALNLSRNNLTGQITPKIDQLKSLDFLDLSQNQFVGGIPSS 691 (789)
Q Consensus 612 ~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~ 691 (789)
.|+.|++++|++++..+ +..+++|+.|++++|++++..+ +..+++|+.|+|++|++++..|
T Consensus 152 -------------~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~-- 212 (308)
T 1h6u_A 152 -------------NLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP-- 212 (308)
T ss_dssp -------------TCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG--
T ss_pred -------------CccEEEccCCcCCCChh--hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCcccc--
Confidence 33677777777764333 6777777777777777774332 6777777777777777775543
Q ss_pred hhcCCCCCeEeccCCcccc
Q 042537 692 LCQLSRLSVMNLSYNNLSG 710 (789)
Q Consensus 692 l~~l~~L~~L~ls~N~l~~ 710 (789)
+..+++|++|++++|++++
T Consensus 213 l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 213 LANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp GTTCTTCCEEEEEEEEEEC
T ss_pred ccCCCCCCEEEccCCeeec
Confidence 6777777888888777764
No 89
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.87 E-value=8.2e-23 Score=215.63 Aligned_cols=252 Identities=17% Similarity=0.184 Sum_probs=187.9
Q ss_pred CCcEEEcCCCcCccccchhcccCCCCCCEEEcCCCccccCCCcccccCCCCcEEEcCCCcCccc-CCccccccCcccEEE
Q 042537 406 NASVLNLSRNKFSESISFLCSINGHKLEFLDLSNNILSGRLPDCWMQFDRLAVLSLANNFFSGK-IPKSMGFLHSIQTLS 484 (789)
Q Consensus 406 ~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~ 484 (789)
.++.++++++.+.......... +.++.|++++|.+.+..+. +..+++|++|++++|.+++. ++..+..+++|++|+
T Consensus 48 ~~~~l~l~~~~~~~~~~~~~~~--~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~ 124 (336)
T 2ast_B 48 LWQTLDLTGKNLHPDVTGRLLS--QGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLS 124 (336)
T ss_dssp TSSEEECTTCBCCHHHHHHHHH--TTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEE
T ss_pred hheeeccccccCCHHHHHhhhh--ccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEe
Confidence 3566677766665221111111 6789999999999876665 55789999999999998765 777788899999999
Q ss_pred ccCCeeeeeCCcCccCCCCCcEEeCCCC-ccccc-CchhhhhcCCCCcEEEcCCC-ccccc-CCCCccCCC-cCceEecc
Q 042537 485 LYNNSLIGELPSFFKSCSQLILMDLGKN-GLSGE-IPTWIGEGLPKLVVLSLKSN-KFHGN-IPFQVCQLS-YIQILDLS 559 (789)
Q Consensus 485 L~~n~l~~~~~~~~~~l~~L~~L~ls~n-~l~~~-~p~~~~~~l~~L~~L~L~~n-~l~~~-~~~~~~~l~-~L~~L~Ls 559 (789)
+++|.+++..+..+..+++|++|++++| .+++. ++..+. .+++|++|++++| .+++. ++..+..++ +|++|+++
T Consensus 125 L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~-~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~ 203 (336)
T 2ast_B 125 LEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLS-SCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLS 203 (336)
T ss_dssp CTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHH-HCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECC
T ss_pred CcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHh-cCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeC
Confidence 9999988777788888999999999999 67653 454444 7899999999999 88754 456677888 99999999
Q ss_pred CCc--cc-ccCCccccccccCcccCCCccccccCcccccccccccccccceeEEEeeccccccccccCceeEEEcccCc-
Q 042537 560 LNN--IS-GIIPKCLNNFTGMAQKSSSNLAITSNYTFERQGIEFLESYVDNVVLTWKGSQHEYRSTLGLVKILDFSMNK- 635 (789)
Q Consensus 560 ~N~--l~-~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~- 635 (789)
+|. ++ +.+|..+.. +++|+.|++++|.
T Consensus 204 ~~~~~~~~~~l~~~~~~-------------------------------------------------~~~L~~L~l~~~~~ 234 (336)
T 2ast_B 204 GYRKNLQKSDLSTLVRR-------------------------------------------------CPNLVHLDLSDSVM 234 (336)
T ss_dssp SCGGGSCHHHHHHHHHH-------------------------------------------------CTTCSEEECTTCTT
T ss_pred CCcccCCHHHHHHHHhh-------------------------------------------------CCCCCEEeCCCCCc
Confidence 994 43 223333333 3445899999999
Q ss_pred cccccchhhhccccCcEEEccCCc-ceeecCcccccCCCCCEEeCCCCcccccCchhhhcC-CCCCeEeccCCcccccCC
Q 042537 636 LSGTIPEEIMDLVGLVALNLSRNN-LTGQITPKIDQLKSLDFLDLSQNQFVGGIPSSLCQL-SRLSVMNLSYNNLSGKIP 713 (789)
Q Consensus 636 l~~~~p~~~~~l~~L~~L~Ls~N~-l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l-~~L~~L~ls~N~l~~~~p 713 (789)
+++..+..+..+++|++|++++|. ++......+.++++|+.|++++| ++.. .+..+ ..++.|++++|++++..|
T Consensus 235 l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~~---~~~~l~~~l~~L~l~~n~l~~~~~ 310 (336)
T 2ast_B 235 LKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDG---TLQLLKEALPHLQINCSHFTTIAR 310 (336)
T ss_dssp CCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTT---CHHHHHHHSTTSEESCCCSCCTTC
T ss_pred CCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCHH---HHHHHHhhCcceEEecccCccccC
Confidence 777788889999999999999995 33222236788999999999999 4432 33333 347777789999998888
Q ss_pred C
Q 042537 714 L 714 (789)
Q Consensus 714 ~ 714 (789)
.
T Consensus 311 ~ 311 (336)
T 2ast_B 311 P 311 (336)
T ss_dssp S
T ss_pred C
Confidence 5
No 90
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.86 E-value=2e-21 Score=201.27 Aligned_cols=192 Identities=21% Similarity=0.321 Sum_probs=155.6
Q ss_pred CCCCEEEcCCCccccCCCcccccCCCCcEEEcCCCcCcccCCccccccCcccEEEccCCeeeeeCCcCccCCCCCcEEeC
Q 042537 430 HKLEFLDLSNNILSGRLPDCWMQFDRLAVLSLANNFFSGKIPKSMGFLHSIQTLSLYNNSLIGELPSFFKSCSQLILMDL 509 (789)
Q Consensus 430 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 509 (789)
++|++|++++|.++. ++ .+..+++|+.|++++|.+++..+ +..+++|++|++++|++.+. ..+..+++|++|++
T Consensus 41 ~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~l 114 (308)
T 1h6u_A 41 DGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIKTLDL 114 (308)
T ss_dssp HTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCEEEC
T ss_pred CCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc--hhhcCCCCCCEEEC
Confidence 678899999998874 44 58888999999999999886544 88889999999999998754 36888999999999
Q ss_pred CCCcccccCchhhhhcCCCCcEEEcCCCcccccCCCCccCCCcCceEeccCCcccccCCccccccccCcccCCCcccccc
Q 042537 510 GKNGLSGEIPTWIGEGLPKLVVLSLKSNKFHGNIPFQVCQLSYIQILDLSLNNISGIIPKCLNNFTGMAQKSSSNLAITS 589 (789)
Q Consensus 510 s~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~ 589 (789)
++|+++ .++. + ..+++|++|++++|++++..+ +..+++|+.|++++|.+++..+ +..+++
T Consensus 115 ~~n~l~-~~~~-l-~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~------------- 174 (308)
T 1h6u_A 115 TSTQIT-DVTP-L-AGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSK------------- 174 (308)
T ss_dssp TTSCCC-CCGG-G-TTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTT-------------
T ss_pred CCCCCC-Cchh-h-cCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCC-------------
Confidence 999998 5664 3 378999999999999986543 7888999999999998885433 444433
Q ss_pred CcccccccccccccccceeEEEeeccccccccccCceeEEEcccCccccccchhhhccccCcEEEccCCcceeecCcccc
Q 042537 590 NYTFERQGIEFLESYVDNVVLTWKGSQHEYRSTLGLVKILDFSMNKLSGTIPEEIMDLVGLVALNLSRNNLTGQITPKID 669 (789)
Q Consensus 590 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~ 669 (789)
|+.|++++|++++..+ +..+++|++|+|++|++++.. .+.
T Consensus 175 ------------------------------------L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~--~l~ 214 (308)
T 1h6u_A 175 ------------------------------------LTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVS--PLA 214 (308)
T ss_dssp ------------------------------------CCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCG--GGT
T ss_pred ------------------------------------CCEEECCCCccCcChh--hcCCCCCCEEEccCCccCccc--ccc
Confidence 4899999999985544 888999999999999998654 388
Q ss_pred cCCCCCEEeCCCCccccc
Q 042537 670 QLKSLDFLDLSQNQFVGG 687 (789)
Q Consensus 670 ~l~~L~~L~Ls~N~l~~~ 687 (789)
.+++|+.|++++|++++.
T Consensus 215 ~l~~L~~L~l~~N~i~~~ 232 (308)
T 1h6u_A 215 NTSNLFIVTLTNQTITNQ 232 (308)
T ss_dssp TCTTCCEEEEEEEEEECC
T ss_pred CCCCCCEEEccCCeeecC
Confidence 899999999999999853
No 91
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.86 E-value=1.6e-22 Score=213.45 Aligned_cols=237 Identities=22% Similarity=0.188 Sum_probs=159.7
Q ss_pred CCCCceeeeEecCCCCcEEEEEcCCCCCCCCcccccCccccCC--CCCCEEeCCCCCCCCCCCcccccCCCCCCEEecCC
Q 042537 32 RDCCYWRGVRCSNTTGHVIVLDLQVLVHSEPLKGTISPSLLKL--YHLRHLDLSENDFSGSRIPEFIGSLNKLRYLSLSS 109 (789)
Q Consensus 32 ~~~c~w~gv~c~~~~~~v~~l~L~~~~~~~~l~~~l~~~~~~l--~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~ 109 (789)
.-|.+|.++.|+ ...++++++++ +.+. +..+..+ +++++|++++|.+.+. .+. +..+++|++|++++
T Consensus 34 ~vc~~W~~~~~~--~~~~~~l~l~~----~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~-~~~-~~~~~~L~~L~L~~ 102 (336)
T 2ast_B 34 GVCKRWYRLASD--ESLWQTLDLTG----KNLH---PDVTGRLLSQGVIAFRCPRSFMDQP-LAE-HFSPFRVQHMDLSN 102 (336)
T ss_dssp SSCHHHHHHHTC--STTSSEEECTT----CBCC---HHHHHHHHHTTCSEEECTTCEECSC-CCS-CCCCBCCCEEECTT
T ss_pred HHHHHHHHHhcC--chhheeecccc----ccCC---HHHHHhhhhccceEEEcCCcccccc-chh-hccCCCCCEEEccC
Confidence 347789998775 34577899987 4444 3456666 8899999999988864 443 56789999999999
Q ss_pred CcCCCC-CCccccCCCCCcEEeccCccCCCCcchHHhhCCCCCCCEEEcCCC-CCCCC-ccccccccccCCCCCCeEEcc
Q 042537 110 AEFEGP-IPSQLGNLSRLKYLDLSYINLNKSRDWLRIIDKLPSLRTLNLEHC-HLPPI-IPSDLLHLNFSTSSLGALYLF 186 (789)
Q Consensus 110 n~i~~~-~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n-~l~~~-~~~~~~~~~l~~~~L~~L~l~ 186 (789)
|.+++. +|..+..+++|++|++++|.+++ ..+..++++++|++|++++| .+++. .+ .....+ ++|++|+++
T Consensus 103 ~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~--~~~~~l~~~~~L~~L~L~~~~~l~~~~l~--~~~~~~--~~L~~L~l~ 176 (336)
T 2ast_B 103 SVIEVSTLHGILSQCSKLQNLSLEGLRLSD--PIVNTLAKNSNLVRLNLSGCSGFSEFALQ--TLLSSC--SRLDELNLS 176 (336)
T ss_dssp CEECHHHHHHHHTTBCCCSEEECTTCBCCH--HHHHHHTTCTTCSEEECTTCBSCCHHHHH--HHHHHC--TTCCEEECC
T ss_pred CCcCHHHHHHHHhhCCCCCEEeCcCcccCH--HHHHHHhcCCCCCEEECCCCCCCCHHHHH--HHHhcC--CCCCEEcCC
Confidence 988755 77778889999999999998775 36778888999999999988 56542 22 122334 677777777
Q ss_pred CC-CCCCCchhHHHhhcC-CCcEEEccCC--CCc-ccCchhhhcCCCCcEEECCCCCccEEecCCCc-CcccchhhhhCC
Q 042537 187 EN-SLSSSIYPWLFNISS-KLVVLDLDSN--LLQ-GSLLEPFDRMVSLRTLYLGFNELEELFLGKNR-LNGTINQWLSRM 260 (789)
Q Consensus 187 ~n-~l~~~~~~~~~~~~~-~L~~L~Ls~n--~i~-~~~~~~~~~l~~L~~L~L~~n~L~~L~L~~n~-l~~~~~~~l~~l 260 (789)
+| .+++......+...+ +|++|++++| .++ +..+..+..+++|+.|+++ +|. +++..+..+..+
T Consensus 177 ~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~----------~~~~l~~~~~~~l~~l 246 (336)
T 2ast_B 177 WCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLS----------DSVMLKNDCFQEFFQL 246 (336)
T ss_dssp CCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECT----------TCTTCCGGGGGGGGGC
T ss_pred CCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCC----------CCCcCCHHHHHHHhCC
Confidence 77 666432233333344 6777777777 343 3345556667777777776 444 445555566677
Q ss_pred CCCCEEEccCCC-CCCccChhhhhcCCCCcEEEccCC
Q 042537 261 YKLDALSLSGNS-LTGVVTESVFSELSNLKALHLDDN 296 (789)
Q Consensus 261 ~~L~~L~L~~n~-l~~~~~~~~~~~l~~L~~L~L~~n 296 (789)
++|++|++++|. +. ......+.++++|++|++++|
T Consensus 247 ~~L~~L~l~~~~~~~-~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 247 NYLQHLSLSRCYDII-PETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp TTCCEEECTTCTTCC-GGGGGGGGGCTTCCEEECTTS
T ss_pred CCCCEeeCCCCCCCC-HHHHHHHhcCCCCCEEeccCc
Confidence 777777777774 22 111113566777777777766
No 92
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.86 E-value=7.8e-23 Score=219.95 Aligned_cols=272 Identities=18% Similarity=0.214 Sum_probs=132.4
Q ss_pred ccCccccCCCCCCEEeCCCCCCCCCC---CcccccCCCCCCEEecCCCcC---CCCCCccc-------cCCCCCcEEecc
Q 042537 66 TISPSLLKLYHLRHLDLSENDFSGSR---IPEFIGSLNKLRYLSLSSAEF---EGPIPSQL-------GNLSRLKYLDLS 132 (789)
Q Consensus 66 ~l~~~~~~l~~L~~L~Ls~n~i~~~~---~~~~~~~l~~L~~L~Ls~n~i---~~~~p~~~-------~~l~~L~~L~Ls 132 (789)
.++..+..+++|++|+|++|.++... ++..+..+++|++|+|++|.+ .+.+|..+ .++++|++|+|+
T Consensus 23 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls 102 (386)
T 2ca6_A 23 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS 102 (386)
T ss_dssp TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred HHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECC
Confidence 34455666677777777777665420 122355667777777776533 33334333 566666666666
Q ss_pred CccCCCC--cchHHhhCCCCCCCEEEcCCCCCCCCccccccccccCCCCCCeEEccCCCCCCCchhHHHhhc--------
Q 042537 133 YINLNKS--RDWLRIIDKLPSLRTLNLEHCHLPPIIPSDLLHLNFSTSSLGALYLFENSLSSSIYPWLFNIS-------- 202 (789)
Q Consensus 133 ~n~l~~~--~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~-------- 202 (789)
+|.++.. ..+|..+.++++|++|++++|.+....+..+ +..+....
T Consensus 103 ~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l------------------------~~~l~~l~~~~~~~~~ 158 (386)
T 2ca6_A 103 DNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKI------------------------ARALQELAVNKKAKNA 158 (386)
T ss_dssp SCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHH------------------------HHHHHHHHHHHHHHTC
T ss_pred CCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHH------------------------HHHHHHHhhhhhcccC
Confidence 6666542 1245556666666666666666542222101 01111110
Q ss_pred CCCcEEEccCCCCc-ccCc---hhhhcCCCCcEEECCCCCccEEecCCCcCcccchhhhhCCCCCCEEEccCCCCC----
Q 042537 203 SKLVVLDLDSNLLQ-GSLL---EPFDRMVSLRTLYLGFNELEELFLGKNRLNGTINQWLSRMYKLDALSLSGNSLT---- 274 (789)
Q Consensus 203 ~~L~~L~Ls~n~i~-~~~~---~~~~~l~~L~~L~L~~n~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~---- 274 (789)
++|++|++++|.++ ...+ ..+..+++|+.|++++|+++.- .+....+..+..+++|++|+|++|.++
T Consensus 159 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~-----g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~ 233 (386)
T 2ca6_A 159 PPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPE-----GIEHLLLEGLAYCQELKVLDLQDNTFTHLGS 233 (386)
T ss_dssp CCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHH-----HHHHHHHTTGGGCTTCCEEECCSSCCHHHHH
T ss_pred CCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHh-----HHHHHHHHHhhcCCCccEEECcCCCCCcHHH
Confidence 24555555555444 1122 2334444444444442221100 000012224444555555555555543
Q ss_pred CccChhhhhcCCCCcEEEccCCccccc----ccCCC--CCcccceeEeccCccCCC----CCchhc-cCCCCccEEEccC
Q 042537 275 GVVTESVFSELSNLKALHLDDNSFTLK----FSHDW--IPPFQLIIILLGSCQMGP----HFPKWL-QTQNQIEVLDISD 343 (789)
Q Consensus 275 ~~~~~~~~~~l~~L~~L~L~~n~i~~~----~~~~~--~~~~~L~~L~l~~~~~~~----~~~~~l-~~l~~L~~L~ls~ 343 (789)
+.++. .+..+++|++|++++|.++.. .+..+ ..+++|+.|++++|.+.. .+|..+ .++++|++|++++
T Consensus 234 ~~l~~-~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~ 312 (386)
T 2ca6_A 234 SALAI-ALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNG 312 (386)
T ss_dssp HHHHH-HGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTT
T ss_pred HHHHH-HHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccC
Confidence 22332 344445555555555544432 11111 113444444444444443 356666 5578888888888
Q ss_pred CcCCCCcc--hhHhhhccCCCeeeec
Q 042537 344 AGISDTVP--DWFWDLSHTIADFNLS 367 (789)
Q Consensus 344 n~i~~~~~--~~~~~~~~~L~~L~l~ 367 (789)
|.+++..+ ..+....+.++.+.+.
T Consensus 313 N~l~~~~~~~~~l~~~l~~~~~~~l~ 338 (386)
T 2ca6_A 313 NRFSEEDDVVDEIREVFSTRGRGELD 338 (386)
T ss_dssp SBSCTTSHHHHHHHHHHHHHTCCEEC
T ss_pred CcCCcchhHHHHHHHHhhhcCcchhh
Confidence 88887764 5555555555544443
No 93
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.86 E-value=7.2e-21 Score=191.20 Aligned_cols=178 Identities=21% Similarity=0.247 Sum_probs=111.6
Q ss_pred cEEEcCCCcCcccCCccccccCcccEEEccCCeeeeeCCcCccCCCCCcEEeCCCCcccccCchhhhhcCCCCcEEEcCC
Q 042537 457 AVLSLANNFFSGKIPKSMGFLHSIQTLSLYNNSLIGELPSFFKSCSQLILMDLGKNGLSGEIPTWIGEGLPKLVVLSLKS 536 (789)
Q Consensus 457 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~l~~L~~L~L~~ 536 (789)
+.++++++.++ .+|..+. +.++.|++++|.+.+..+..|.++++|++|++++|.+++ ++...+..+++|++|++++
T Consensus 17 ~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~ 92 (251)
T 3m19_A 17 KEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQT-LSAGVFDDLTELGTLGLAN 92 (251)
T ss_dssp TEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCC-CCTTTTTTCTTCCEEECTT
T ss_pred eEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCc-cCHhHhccCCcCCEEECCC
Confidence 34444444444 2333222 345555555555555544455555555555555555552 3322222455666666666
Q ss_pred CcccccCCCCccCCCcCceEeccCCcccccCCccccccccCcccCCCccccccCcccccccccccccccceeEEEeeccc
Q 042537 537 NKFHGNIPFQVCQLSYIQILDLSLNNISGIIPKCLNNFTGMAQKSSSNLAITSNYTFERQGIEFLESYVDNVVLTWKGSQ 616 (789)
Q Consensus 537 n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 616 (789)
|++++..+..+..+++|++|++++|++++..+..|..+++|
T Consensus 93 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L--------------------------------------- 133 (251)
T 3m19_A 93 NQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKL--------------------------------------- 133 (251)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC---------------------------------------
T ss_pred CcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcc---------------------------------------
Confidence 66655555556666667777777776665555545444444
Q ss_pred cccccccCceeEEEcccCccccccchhhhccccCcEEEccCCcceeecCcccccCCCCCEEeCCCCccccc
Q 042537 617 HEYRSTLGLVKILDFSMNKLSGTIPEEIMDLVGLVALNLSRNNLTGQITPKIDQLKSLDFLDLSQNQFVGG 687 (789)
Q Consensus 617 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 687 (789)
+.|++++|++++..+..|..+++|++|+|++|++++..+..+..+++|+.|+|++|++.+.
T Consensus 134 ----------~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 134 ----------KELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp ----------CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred ----------cEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 7777777777766666788888888889988888877777888888999999999998865
No 94
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.85 E-value=1.2e-21 Score=208.48 Aligned_cols=276 Identities=17% Similarity=0.143 Sum_probs=165.8
Q ss_pred EEcCCCCCCCCcccccCccccCCCCCCEEeCCCCCCCCCCCc----ccccCCC-CCCEEecCCCcCCCCCCccccCC---
Q 042537 52 LDLQVLVHSEPLKGTISPSLLKLYHLRHLDLSENDFSGSRIP----EFIGSLN-KLRYLSLSSAEFEGPIPSQLGNL--- 123 (789)
Q Consensus 52 l~L~~~~~~~~l~~~l~~~~~~l~~L~~L~Ls~n~i~~~~~~----~~~~~l~-~L~~L~Ls~n~i~~~~p~~~~~l--- 123 (789)
.+++. +.+.|.+|..+...++|++|++++|.+++. .+ ..+..++ +|++|+|++|.+++..+..+..+
T Consensus 3 ~~ls~----n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~-~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~ 77 (362)
T 3goz_A 3 YKLTL----HPGSNPVEEFTSIPHGVTSLDLSLNNLYSI-STVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAA 77 (362)
T ss_dssp EECCC----CTTCCHHHHHHTSCTTCCEEECTTSCGGGS-CHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHT
T ss_pred ccccc----ccchHHHHHHHhCCCCceEEEccCCCCChH-HHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhc
Confidence 34555 677777777666666788888888888754 33 5667777 78888888888887666666664
Q ss_pred --CCCcEEeccCccCCCCc--chHHhhCCC-CCCCEEEcCCCCCCCCccccccc--cccCCCCCCeEEccCCCCCCCchh
Q 042537 124 --SRLKYLDLSYINLNKSR--DWLRIIDKL-PSLRTLNLEHCHLPPIIPSDLLH--LNFSTSSLGALYLFENSLSSSIYP 196 (789)
Q Consensus 124 --~~L~~L~Ls~n~l~~~~--~~~~~l~~l-~~L~~L~L~~n~l~~~~~~~~~~--~~l~~~~L~~L~l~~n~l~~~~~~ 196 (789)
++|++|+|++|+++... .+...+..+ ++|++|++++|.+.+..+..+.. ..+ .++|++|++++|.+++....
T Consensus 78 ~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~-~~~L~~L~Ls~N~l~~~~~~ 156 (362)
T 3goz_A 78 IPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNL-PASITSLNLRGNDLGIKSSD 156 (362)
T ss_dssp SCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTS-CTTCCEEECTTSCGGGSCHH
T ss_pred cCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhC-CCceeEEEccCCcCCHHHHH
Confidence 88888888888877541 122335555 78888888888876554422111 110 14777777777777654333
Q ss_pred HH----HhhcCCCcEEEccCCCCcccCchhhhc----C-CCCcEEECCCCCccEEecCCCcCcccchhhhhC-CCCCCEE
Q 042537 197 WL----FNISSKLVVLDLDSNLLQGSLLEPFDR----M-VSLRTLYLGFNELEELFLGKNRLNGTINQWLSR-MYKLDAL 266 (789)
Q Consensus 197 ~~----~~~~~~L~~L~Ls~n~i~~~~~~~~~~----l-~~L~~L~L~~n~L~~L~L~~n~l~~~~~~~l~~-l~~L~~L 266 (789)
.+ ....++|++|++++|.+++..+..+.. + ++|+.|+|++|+++... ...++..+.. .++|++|
T Consensus 157 ~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~------~~~l~~~l~~~~~~L~~L 230 (362)
T 3goz_A 157 ELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKS------YAELAYIFSSIPNHVVSL 230 (362)
T ss_dssp HHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSC------HHHHHHHHHHSCTTCCEE
T ss_pred HHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhH------HHHHHHHHhcCCCCceEE
Confidence 33 222236777777777777666544433 3 46666666633332100 0023444444 3467777
Q ss_pred EccCCCCCCccC---hhhhhcCCCCcEEEccCCcccccccCCCCCcccceeEeccCccCCCCCchhccCCCCccEEEccC
Q 042537 267 SLSGNSLTGVVT---ESVFSELSNLKALHLDDNSFTLKFSHDWIPPFQLIIILLGSCQMGPHFPKWLQTQNQIEVLDISD 343 (789)
Q Consensus 267 ~L~~n~l~~~~~---~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~ 343 (789)
+|++|.+.+..+ ...+..+++|++|++++|.+........ ..++..+..+++|+.||+++
T Consensus 231 ~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~-----------------~~l~~~~~~l~~L~~LdL~~ 293 (362)
T 3goz_A 231 NLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQC-----------------KALGAAFPNIQKIILVDKNG 293 (362)
T ss_dssp ECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHH-----------------HHHHTTSTTCCEEEEECTTS
T ss_pred ECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHH-----------------HHHHHHhccCCceEEEecCC
Confidence 777777763222 1123455666677766666432211100 02334566788888999999
Q ss_pred CcCCCCcchhHhh
Q 042537 344 AGISDTVPDWFWD 356 (789)
Q Consensus 344 n~i~~~~~~~~~~ 356 (789)
|.+.+..+..+..
T Consensus 294 N~l~~~~~~~~~~ 306 (362)
T 3goz_A 294 KEIHPSHSIPISN 306 (362)
T ss_dssp CBCCGGGCHHHHH
T ss_pred CcCCCcchHHHHH
Confidence 9888775555443
No 95
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.84 E-value=3.7e-20 Score=195.77 Aligned_cols=223 Identities=20% Similarity=0.187 Sum_probs=157.0
Q ss_pred CCCCEEEcCCCccccCCCcccccCCCCcEEEcCCCcCcccCC-ccccccCcccE-EEccCCeeeeeCCcCccCCCCCcEE
Q 042537 430 HKLEFLDLSNNILSGRLPDCWMQFDRLAVLSLANNFFSGKIP-KSMGFLHSIQT-LSLYNNSLIGELPSFFKSCSQLILM 507 (789)
Q Consensus 430 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~-L~L~~n~l~~~~~~~~~~l~~L~~L 507 (789)
+++++|+|++|+|+.+.+.+|.++++|++|+|++|++.+.+| .+|.+++++++ +.++.|+++.+.|..|..+++|++|
T Consensus 30 ~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L 109 (350)
T 4ay9_X 30 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYL 109 (350)
T ss_dssp TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEE
T ss_pred CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccc
Confidence 567888888888886666678888888888888888765444 56777777665 5566788888888888888888888
Q ss_pred eCCCCcccccCchhhhhcCCCCcEEEcCC-CcccccCCCCccCCC-cCceEeccCCcccccCCccccccccCcccCCCcc
Q 042537 508 DLGKNGLSGEIPTWIGEGLPKLVVLSLKS-NKFHGNIPFQVCQLS-YIQILDLSLNNISGIIPKCLNNFTGMAQKSSSNL 585 (789)
Q Consensus 508 ~ls~n~l~~~~p~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~ 585 (789)
++++|++. .+|...+....++..+++.+ +++....+..|..+. .++.|++++|+++.+.+..|.. .
T Consensus 110 ~l~~n~l~-~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~-~---------- 177 (350)
T 4ay9_X 110 LISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNG-T---------- 177 (350)
T ss_dssp EEEEECCS-SCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTT-E----------
T ss_pred cccccccc-cCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhccc-c----------
Confidence 88888887 55544433456677787754 567665566666664 5788888888888655544422 1
Q ss_pred ccccCcccccccccccccccceeEEEeeccccccccccCceeEEEccc-CccccccchhhhccccCcEEEccCCcceeec
Q 042537 586 AITSNYTFERQGIEFLESYVDNVVLTWKGSQHEYRSTLGLVKILDFSM-NKLSGTIPEEIMDLVGLVALNLSRNNLTGQI 664 (789)
Q Consensus 586 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~ 664 (789)
.++.+++++ |.++...++.|..+++|++|+|++|+|+...
T Consensus 178 ---------------------------------------~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp 218 (350)
T 4ay9_X 178 ---------------------------------------QLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLP 218 (350)
T ss_dssp ---------------------------------------EEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCC
T ss_pred ---------------------------------------chhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccC
Confidence 237788875 5666444456788889999999999888443
Q ss_pred CcccccCCCCCEEeCCCCcccccCchhhhcCCCCCeEeccCCc
Q 042537 665 TPKIDQLKSLDFLDLSQNQFVGGIPSSLCQLSRLSVMNLSYNN 707 (789)
Q Consensus 665 p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~ 707 (789)
+.. +.+|+.|.+.++.-...+| .+..+++|+.++++++.
T Consensus 219 ~~~---~~~L~~L~~l~~~~l~~lP-~l~~l~~L~~l~l~~~~ 257 (350)
T 4ay9_X 219 SYG---LENLKKLRARSTYNLKKLP-TLEKLVALMEASLTYPS 257 (350)
T ss_dssp SSS---CTTCCEEECTTCTTCCCCC-CTTTCCSCCEEECSCHH
T ss_pred hhh---hccchHhhhccCCCcCcCC-CchhCcChhhCcCCCCc
Confidence 333 4556666665555444666 37788888888888754
No 96
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.83 E-value=9e-21 Score=185.83 Aligned_cols=158 Identities=23% Similarity=0.248 Sum_probs=135.6
Q ss_pred cEEeCCCCcccccCchhhhhcCCCCcEEEcCCCcccccCC-CCccCCCcCceEeccCCcccccCCccccccccCcccCCC
Q 042537 505 ILMDLGKNGLSGEIPTWIGEGLPKLVVLSLKSNKFHGNIP-FQVCQLSYIQILDLSLNNISGIIPKCLNNFTGMAQKSSS 583 (789)
Q Consensus 505 ~~L~ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~ 583 (789)
+.+++++|.++ .+|..+. +.+++|++++|++++..+ ..|..+++|+.|++++|.+++..+..|..+++|
T Consensus 14 ~~l~~s~n~l~-~iP~~~~---~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L------ 83 (220)
T 2v70_A 14 TTVDCSNQKLN-KIPEHIP---QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGV------ 83 (220)
T ss_dssp TEEECCSSCCS-SCCSCCC---TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTC------
T ss_pred CEeEeCCCCcc-cCccCCC---CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCC------
Confidence 47888888887 6776553 457888888888887654 457888899999999999888777777766655
Q ss_pred ccccccCcccccccccccccccceeEEEeeccccccccccCceeEEEcccCccccccchhhhccccCcEEEccCCcceee
Q 042537 584 NLAITSNYTFERQGIEFLESYVDNVVLTWKGSQHEYRSTLGLVKILDFSMNKLSGTIPEEIMDLVGLVALNLSRNNLTGQ 663 (789)
Q Consensus 584 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 663 (789)
+.|+|++|++++..|..|..+++|++|+|++|++++.
T Consensus 84 -------------------------------------------~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 120 (220)
T 2v70_A 84 -------------------------------------------NEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCV 120 (220)
T ss_dssp -------------------------------------------CEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCB
T ss_pred -------------------------------------------CEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeE
Confidence 8899999999988888899999999999999999988
Q ss_pred cCcccccCCCCCEEeCCCCcccccCchhhhcCCCCCeEeccCCcccccCCCC
Q 042537 664 ITPKIDQLKSLDFLDLSQNQFVGGIPSSLCQLSRLSVMNLSYNNLSGKIPLG 715 (789)
Q Consensus 664 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~ 715 (789)
.|..|..+++|+.|+|++|++++..|..|..+++|++|++++|++.|.++..
T Consensus 121 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~ 172 (220)
T 2v70_A 121 GNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCYLA 172 (220)
T ss_dssp CTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGGGH
T ss_pred CHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCchH
Confidence 8999999999999999999999998999999999999999999999988754
No 97
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.82 E-value=5.6e-20 Score=194.40 Aligned_cols=244 Identities=16% Similarity=0.112 Sum_probs=174.7
Q ss_pred CEEEcCCCccccCCCcccccCCCCcEEEcCCCcCcccCCccccccCcccEEEccCCeeeeeC-CcCccCCCCCcE-EeCC
Q 042537 433 EFLDLSNNILSGRLPDCWMQFDRLAVLSLANNFFSGKIPKSMGFLHSIQTLSLYNNSLIGEL-PSFFKSCSQLIL-MDLG 510 (789)
Q Consensus 433 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~-L~ls 510 (789)
+.++.++++++ .+|..+ .+++++|+|++|+|+.+.+.+|.++++|++|+|++|++.+.+ +..|.+++++++ +.++
T Consensus 12 ~~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp TEEEEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred CEEEecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 46777788887 566555 357888999999988776678888889999999998875544 457788887765 5666
Q ss_pred CCcccccCchhhhhcCCCCcEEEcCCCcccccCCCCccCCCcCceEeccC-CcccccCCccccccccCcccCCCcccccc
Q 042537 511 KNGLSGEIPTWIGEGLPKLVVLSLKSNKFHGNIPFQVCQLSYIQILDLSL-NNISGIIPKCLNNFTGMAQKSSSNLAITS 589 (789)
Q Consensus 511 ~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~l~~~~~~~~~ 589 (789)
.|+++ .++...+..+++|++|++++|++....+..+.....+..+++.+ +++....+..|..+.
T Consensus 89 ~N~l~-~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~-------------- 153 (350)
T 4ay9_X 89 ANNLL-YINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLS-------------- 153 (350)
T ss_dssp ETTCC-EECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSB--------------
T ss_pred CCccc-ccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcc--------------
Confidence 78887 66555555788889999988888876666666777788888865 456655444444332
Q ss_pred CcccccccccccccccceeEEEeeccccccccccCceeEEEcccCccccccchhhhccccCcEEEccC-CcceeecCccc
Q 042537 590 NYTFERQGIEFLESYVDNVVLTWKGSQHEYRSTLGLVKILDFSMNKLSGTIPEEIMDLVGLVALNLSR-NNLTGQITPKI 668 (789)
Q Consensus 590 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~-N~l~~~~p~~~ 668 (789)
..++.|++++|+|+ .+|.......+|++|++++ |.++...+..|
T Consensus 154 ----------------------------------~~l~~L~L~~N~i~-~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f 198 (350)
T 4ay9_X 154 ----------------------------------FESVILWLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLEELPNDVF 198 (350)
T ss_dssp ----------------------------------SSCEEEECCSSCCC-EECTTSSTTEEEEEEECTTCTTCCCCCTTTT
T ss_pred ----------------------------------hhhhhhcccccccc-CCChhhccccchhHHhhccCCcccCCCHHHh
Confidence 22489999999999 4555555667899999985 66764444578
Q ss_pred ccCCCCCEEeCCCCcccccCchhhhcCCCCCeEeccCCcccccCCCCCccccccccccCCCCCCC
Q 042537 669 DQLKSLDFLDLSQNQFVGGIPSSLCQLSRLSVMNLSYNNLSGKIPLGTQLQSFNASVYAGNPELC 733 (789)
Q Consensus 669 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~n~~lc 733 (789)
..+++|+.|||++|+|+...+..| ..|+.|.+.+++--..+|.-..+..+..... ++|+.|
T Consensus 199 ~~l~~L~~LdLs~N~l~~lp~~~~---~~L~~L~~l~~~~l~~lP~l~~l~~L~~l~l-~~~~~c 259 (350)
T 4ay9_X 199 HGASGPVILDISRTRIHSLPSYGL---ENLKKLRARSTYNLKKLPTLEKLVALMEASL-TYPSHC 259 (350)
T ss_dssp TTEECCSEEECTTSCCCCCCSSSC---TTCCEEECTTCTTCCCCCCTTTCCSCCEEEC-SCHHHH
T ss_pred ccCcccchhhcCCCCcCccChhhh---ccchHhhhccCCCcCcCCCchhCcChhhCcC-CCCccc
Confidence 999999999999999996655554 4566666666554457776555555544433 355555
No 98
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.82 E-value=8e-20 Score=177.89 Aligned_cols=63 Identities=19% Similarity=0.142 Sum_probs=30.8
Q ss_pred eEEEcccCccccccchhhhccccCcEEEccCCcceeecCcccccCCCCCEEeCCCCcccccCchhhhcCC
Q 042537 627 KILDFSMNKLSGTIPEEIMDLVGLVALNLSRNNLTGQITPKIDQLKSLDFLDLSQNQFVGGIPSSLCQLS 696 (789)
Q Consensus 627 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~ 696 (789)
+.|++++|++++..+..|..+++|++|++++|.+.+ .+++|+.|+++.|+++|.+|..++.++
T Consensus 127 ~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g~ip~~~~~l~ 189 (208)
T 2o6s_A 127 KDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSAGSVA 189 (208)
T ss_dssp CEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC-------CTTTTHHHHHHHHHCTTTBBCTTSSBC
T ss_pred CEEECCCCccceeCHHHhccCCCccEEEecCCCeec-------CCCCHHHHHHHHHhCCceeeccCcccc
Confidence 444444444443333334455555555555554442 223455555555555555555554443
No 99
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.82 E-value=3.4e-20 Score=181.68 Aligned_cols=157 Identities=22% Similarity=0.286 Sum_probs=136.0
Q ss_pred cEEeCCCCcccccCchhhhhcCCCCcEEEcCCCcccccCCCCccCCCcCceEeccCCcccccCCccccccccCcccCCCc
Q 042537 505 ILMDLGKNGLSGEIPTWIGEGLPKLVVLSLKSNKFHGNIPFQVCQLSYIQILDLSLNNISGIIPKCLNNFTGMAQKSSSN 584 (789)
Q Consensus 505 ~~L~ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~ 584 (789)
+.++++++.++ .+|..+. ++++.|++++|++++..+..|..+++|+.|++++|++++..|..|.++++|
T Consensus 14 ~~v~c~~~~l~-~iP~~l~---~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L------- 82 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP---ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSL------- 82 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC---TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSC-------
T ss_pred CEEEcCCCCcC-cCCCccC---cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCC-------
Confidence 56788888887 7887553 578899999999987777788889999999999999988888887776666
Q ss_pred cccccCcccccccccccccccceeEEEeeccccccccccCceeEEEcccCccccccchhhhccccCcEEEccCCcceeec
Q 042537 585 LAITSNYTFERQGIEFLESYVDNVVLTWKGSQHEYRSTLGLVKILDFSMNKLSGTIPEEIMDLVGLVALNLSRNNLTGQI 664 (789)
Q Consensus 585 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~ 664 (789)
+.|+|++|++++..+..|..+++|++|+|++|++++..
T Consensus 83 ------------------------------------------~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~ 120 (220)
T 2v9t_B 83 ------------------------------------------NSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLR 120 (220)
T ss_dssp ------------------------------------------CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred ------------------------------------------CEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeC
Confidence 88999999999666667889999999999999999888
Q ss_pred CcccccCCCCCEEeCCCCcccccCchhhhcCCCCCeEeccCCcccccCCC
Q 042537 665 TPKIDQLKSLDFLDLSQNQFVGGIPSSLCQLSRLSVMNLSYNNLSGKIPL 714 (789)
Q Consensus 665 p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~ 714 (789)
|..|..+++|+.|+|++|++++..+..|..+++|++|++++|++.+.++.
T Consensus 121 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~l 170 (220)
T 2v9t_B 121 VDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDCHL 170 (220)
T ss_dssp TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECSGGG
T ss_pred HHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCCCcc
Confidence 89999999999999999999988888899999999999999999887653
No 100
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.81 E-value=1.6e-19 Score=200.35 Aligned_cols=190 Identities=24% Similarity=0.342 Sum_probs=130.8
Q ss_pred CCCCEEEcCCCccccCCCcccccCCCCcEEEcCCCcCcccCCccccccCcccEEEccCCeeeeeCCcCccCCCCCcEEeC
Q 042537 430 HKLEFLDLSNNILSGRLPDCWMQFDRLAVLSLANNFFSGKIPKSMGFLHSIQTLSLYNNSLIGELPSFFKSCSQLILMDL 509 (789)
Q Consensus 430 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 509 (789)
.+++.|++++|.+++ +|..+ +++|+.|++++|+++ .+| ..+++|++|++++|.+++ +|. +.. +|++|++
T Consensus 59 ~~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~L 127 (571)
T 3cvr_A 59 NQFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDV 127 (571)
T ss_dssp TTCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEEC
T ss_pred CCccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEEC
Confidence 367777777777775 45444 266777777777777 455 345677777777777775 454 443 7777777
Q ss_pred CCCcccccCchhhhhcCCCCcEEEcCCCcccccCCCCccCCCcCceEeccCCcccccCCccccccccCcccCCCcccccc
Q 042537 510 GKNGLSGEIPTWIGEGLPKLVVLSLKSNKFHGNIPFQVCQLSYIQILDLSLNNISGIIPKCLNNFTGMAQKSSSNLAITS 589 (789)
Q Consensus 510 s~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~ 589 (789)
++|+++ .+|. .+++|+.|++++|++++ +|. .+++|+.|++++|++++ +|. |. ++
T Consensus 128 s~N~l~-~lp~----~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~------------- 181 (571)
T 3cvr_A 128 DNNQLT-MLPE----LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ES------------- 181 (571)
T ss_dssp CSSCCS-CCCC----CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TT-------------
T ss_pred CCCcCC-CCCC----cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CC-------------
Confidence 777777 3665 36777777777777775 444 46677777887777775 333 32 22
Q ss_pred CcccccccccccccccceeEEEeeccccccccccCceeEEEcccCccccccchhhhccccC-------cEEEccCCccee
Q 042537 590 NYTFERQGIEFLESYVDNVVLTWKGSQHEYRSTLGLVKILDFSMNKLSGTIPEEIMDLVGL-------VALNLSRNNLTG 662 (789)
Q Consensus 590 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L-------~~L~Ls~N~l~~ 662 (789)
|+.|+|++|+|+ .+|. |.. +| +.|+|++|+|+
T Consensus 182 ------------------------------------L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~- 220 (571)
T 3cvr_A 182 ------------------------------------LEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT- 220 (571)
T ss_dssp ------------------------------------CCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-
T ss_pred ------------------------------------CCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-
Confidence 377788888777 5555 544 56 88888888888
Q ss_pred ecCcccccCCCCCEEeCCCCcccccCchhhhcCCC
Q 042537 663 QITPKIDQLKSLDFLDLSQNQFVGGIPSSLCQLSR 697 (789)
Q Consensus 663 ~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~ 697 (789)
.+|..+..+++|+.|+|++|++++.+|..+..++.
T Consensus 221 ~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~ 255 (571)
T 3cvr_A 221 HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTA 255 (571)
T ss_dssp CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHHH
T ss_pred ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhhc
Confidence 57777777888888888888888888887776543
No 101
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.81 E-value=1.1e-19 Score=176.78 Aligned_cols=133 Identities=23% Similarity=0.213 Sum_probs=61.8
Q ss_pred CCCCEEEcCCCccccCCCcccccCCCCcEEEcCCCcCcccCCccccccCcccEEEccCCeeeeeCCcCccCCCCCcEEeC
Q 042537 430 HKLEFLDLSNNILSGRLPDCWMQFDRLAVLSLANNFFSGKIPKSMGFLHSIQTLSLYNNSLIGELPSFFKSCSQLILMDL 509 (789)
Q Consensus 430 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 509 (789)
+++++|++++|++++..+..|..+++|++|++++|++++..+..|..+++|++|++++|.+++..+..|..+++|++|++
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 107 (208)
T 2o6s_A 28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELAL 107 (208)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEc
Confidence 34455555555554444444445555555555555555444444444555555555555554444444444445555555
Q ss_pred CCCcccccCchhhhhcCCCCcEEEcCCCcccccCCCCccCCCcCceEeccCCcc
Q 042537 510 GKNGLSGEIPTWIGEGLPKLVVLSLKSNKFHGNIPFQVCQLSYIQILDLSLNNI 563 (789)
Q Consensus 510 s~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l 563 (789)
++|+++ .++...+..+++|++|++++|++++..+..+..+++|+.|++++|++
T Consensus 108 ~~N~l~-~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 160 (208)
T 2o6s_A 108 NTNQLQ-SLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPW 160 (208)
T ss_dssp CSSCCC-CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCB
T ss_pred CCCcCc-ccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCe
Confidence 555444 33333222344444444444444433333344444444444444433
No 102
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.80 E-value=3.3e-19 Score=197.88 Aligned_cols=182 Identities=25% Similarity=0.363 Sum_probs=153.5
Q ss_pred CCcEEEcCCCcCcccCCccccccCcccEEEccCCeeeeeCCcCccCCCCCcEEeCCCCcccccCchhhhhcCCCCcEEEc
Q 042537 455 RLAVLSLANNFFSGKIPKSMGFLHSIQTLSLYNNSLIGELPSFFKSCSQLILMDLGKNGLSGEIPTWIGEGLPKLVVLSL 534 (789)
Q Consensus 455 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~l~~L~~L~L 534 (789)
+++.|++++|.+++ +|..+ .++|++|++++|.++ .+| ..+++|++|++++|+++ .+|. +. .+|+.|++
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~-~ip~-l~---~~L~~L~L 127 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLS-TLPE-LP---ASLKHLDV 127 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCS-CCCC-CC---TTCCEEEC
T ss_pred CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCC-Ccch-hh---cCCCEEEC
Confidence 89999999999996 66655 378999999999999 556 45789999999999999 5888 44 29999999
Q ss_pred CCCcccccCCCCccCCCcCceEeccCCcccccCCccccccccCcccCCCccccccCcccccccccccccccceeEEEeec
Q 042537 535 KSNKFHGNIPFQVCQLSYIQILDLSLNNISGIIPKCLNNFTGMAQKSSSNLAITSNYTFERQGIEFLESYVDNVVLTWKG 614 (789)
Q Consensus 535 ~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 614 (789)
++|++++ +|. .+++|+.|++++|.+++ +|. .++
T Consensus 128 s~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~--------------------------------------- 160 (571)
T 3cvr_A 128 DNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPT--------------------------------------- 160 (571)
T ss_dssp CSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCT---------------------------------------
T ss_pred CCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCC---------------------------------------
Confidence 9999997 565 68999999999999986 443 222
Q ss_pred cccccccccCceeEEEcccCccccccchhhhccccCcEEEccCCcceeecCcccccCCCC-------CEEeCCCCccccc
Q 042537 615 SQHEYRSTLGLVKILDFSMNKLSGTIPEEIMDLVGLVALNLSRNNLTGQITPKIDQLKSL-------DFLDLSQNQFVGG 687 (789)
Q Consensus 615 ~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L-------~~L~Ls~N~l~~~ 687 (789)
+|+.|++++|++++ +|. |. ++|+.|+|++|+|+ .+|. +.. +| +.|+|++|+|+ .
T Consensus 161 ----------~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~ 221 (571)
T 3cvr_A 161 ----------SLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-H 221 (571)
T ss_dssp ----------TCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-C
T ss_pred ----------CcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-e
Confidence 34899999999996 776 66 89999999999999 6777 655 77 99999999999 5
Q ss_pred CchhhhcCCCCCeEeccCCcccccCCC
Q 042537 688 IPSSLCQLSRLSVMNLSYNNLSGKIPL 714 (789)
Q Consensus 688 ~p~~l~~l~~L~~L~ls~N~l~~~~p~ 714 (789)
+|..+..+++|++|++++|++++.+|.
T Consensus 222 lp~~l~~l~~L~~L~L~~N~l~~~~p~ 248 (571)
T 3cvr_A 222 IPENILSLDPTCTIILEDNPLSSRIRE 248 (571)
T ss_dssp CCGGGGGSCTTEEEECCSSSCCHHHHH
T ss_pred cCHHHhcCCCCCEEEeeCCcCCCcCHH
Confidence 788888899999999999999998774
No 103
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.79 E-value=7.1e-19 Score=173.56 Aligned_cols=157 Identities=23% Similarity=0.215 Sum_probs=135.7
Q ss_pred CcEEeCCCCcccccCchhhhhcCCCCcEEEcCCCcccccCCCCccCCCcCceEeccCCcccccCCccccccccCcccCCC
Q 042537 504 LILMDLGKNGLSGEIPTWIGEGLPKLVVLSLKSNKFHGNIPFQVCQLSYIQILDLSLNNISGIIPKCLNNFTGMAQKSSS 583 (789)
Q Consensus 504 L~~L~ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~ 583 (789)
-+.++.+++.+. .+|..+. ++|++|++++|++++..|..+..+++|++|++++|+++...+..|..+++|
T Consensus 21 ~~~v~c~~~~l~-~ip~~~~---~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L------ 90 (229)
T 3e6j_A 21 GTTVDCRSKRHA-SVPAGIP---TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQL------ 90 (229)
T ss_dssp TTEEECTTSCCS-SCCSCCC---TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC------
T ss_pred CCEeEccCCCcC-ccCCCCC---CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCc------
Confidence 457888888887 7887653 788999999999988888888899999999999999886666666665555
Q ss_pred ccccccCcccccccccccccccceeEEEeeccccccccccCceeEEEcccCccccccchhhhccccCcEEEccCCcceee
Q 042537 584 NLAITSNYTFERQGIEFLESYVDNVVLTWKGSQHEYRSTLGLVKILDFSMNKLSGTIPEEIMDLVGLVALNLSRNNLTGQ 663 (789)
Q Consensus 584 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 663 (789)
+.|+|++|++++..+..|..+++|++|+|++|+|+ .
T Consensus 91 -------------------------------------------~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~ 126 (229)
T 3e6j_A 91 -------------------------------------------TVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-E 126 (229)
T ss_dssp -------------------------------------------CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-S
T ss_pred -------------------------------------------CEEECCCCcCCccChhHhCcchhhCeEeccCCccc-c
Confidence 89999999999777777899999999999999999 7
Q ss_pred cCcccccCCCCCEEeCCCCcccccCchhhhcCCCCCeEeccCCcccccCCC
Q 042537 664 ITPKIDQLKSLDFLDLSQNQFVGGIPSSLCQLSRLSVMNLSYNNLSGKIPL 714 (789)
Q Consensus 664 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~ 714 (789)
+|..+..+++|+.|+|++|++++..+..|..+++|+.|++++|++.|.++.
T Consensus 127 lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~ 177 (229)
T 3e6j_A 127 LPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECRD 177 (229)
T ss_dssp CCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBGG
T ss_pred cCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcch
Confidence 889999999999999999999988878899999999999999999988773
No 104
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.78 E-value=3.1e-19 Score=189.48 Aligned_cols=181 Identities=23% Similarity=0.226 Sum_probs=153.2
Q ss_pred ccEEEccCCeeeeeCCcCccCCCCCcEEeCCCCcccccCchhhhh-cCCCCcEEEcCCCcccccCCCCccCCCcCceEec
Q 042537 480 IQTLSLYNNSLIGELPSFFKSCSQLILMDLGKNGLSGEIPTWIGE-GLPKLVVLSLKSNKFHGNIPFQVCQLSYIQILDL 558 (789)
Q Consensus 480 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 558 (789)
-+.++++++.++. +|..+. +.++.|++++|+++ .++...+. ++++|+.|+|++|++++..+..|.++++|++|+|
T Consensus 20 ~~~l~c~~~~l~~-iP~~~~--~~l~~L~Ls~N~l~-~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~L 95 (361)
T 2xot_A 20 SNILSCSKQQLPN-VPQSLP--SYTALLDLSHNNLS-RLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDL 95 (361)
T ss_dssp TTEEECCSSCCSS-CCSSCC--TTCSEEECCSSCCC-EECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred CCEEEeCCCCcCc-cCccCC--CCCCEEECCCCCCC-ccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEEC
Confidence 3689999999984 565443 46899999999999 56655554 7899999999999999888888999999999999
Q ss_pred cCCcccccCCccccccccCcccCCCccccccCcccccccccccccccceeEEEeeccccccccccCceeEEEcccCcccc
Q 042537 559 SLNNISGIIPKCLNNFTGMAQKSSSNLAITSNYTFERQGIEFLESYVDNVVLTWKGSQHEYRSTLGLVKILDFSMNKLSG 638 (789)
Q Consensus 559 s~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~ 638 (789)
++|++++..+..|..+++| +.|+|++|+|++
T Consensus 96 s~N~l~~~~~~~~~~l~~L-------------------------------------------------~~L~L~~N~i~~ 126 (361)
T 2xot_A 96 SSNHLHTLDEFLFSDLQAL-------------------------------------------------EVLLLYNNHIVV 126 (361)
T ss_dssp CSSCCCEECTTTTTTCTTC-------------------------------------------------CEEECCSSCCCE
T ss_pred CCCcCCcCCHHHhCCCcCC-------------------------------------------------CEEECCCCcccE
Confidence 9999998777777766655 899999999998
Q ss_pred ccchhhhccccCcEEEccCCcceeecCccc---ccCCCCCEEeCCCCcccccCchhhhcCCC--CCeEeccCCcccccCC
Q 042537 639 TIPEEIMDLVGLVALNLSRNNLTGQITPKI---DQLKSLDFLDLSQNQFVGGIPSSLCQLSR--LSVMNLSYNNLSGKIP 713 (789)
Q Consensus 639 ~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~---~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~--L~~L~ls~N~l~~~~p 713 (789)
..|..|..+++|+.|+|++|+|++..+..| ..+++|+.|||++|+|++..+..+..++. ++.|++++|++.+.+.
T Consensus 127 ~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C~C~ 206 (361)
T 2xot_A 127 VDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLECDCK 206 (361)
T ss_dssp ECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEECCHH
T ss_pred ECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCccCCcC
Confidence 889999999999999999999996444445 67999999999999999887788998887 4899999999988765
No 105
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.78 E-value=5.2e-19 Score=187.70 Aligned_cols=178 Identities=24% Similarity=0.242 Sum_probs=152.6
Q ss_pred cEEEcCCCcCcccCCccccccCcccEEEccCCeeeeeCCcCcc-CCCCCcEEeCCCCcccccCchhhhhcCCCCcEEEcC
Q 042537 457 AVLSLANNFFSGKIPKSMGFLHSIQTLSLYNNSLIGELPSFFK-SCSQLILMDLGKNGLSGEIPTWIGEGLPKLVVLSLK 535 (789)
Q Consensus 457 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~ls~n~l~~~~p~~~~~~l~~L~~L~L~ 535 (789)
+.++++++.++ .+|..+. ..++.|++++|.+++..+..|. ++++|++|++++|+|+ .++...+.++++|++|+|+
T Consensus 21 ~~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~-~i~~~~~~~l~~L~~L~Ls 96 (361)
T 2xot_A 21 NILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLS 96 (361)
T ss_dssp TEEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECC
T ss_pred CEEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCC-ccChhhccCCCCCCEEECC
Confidence 68999999999 4666553 4689999999999999888888 9999999999999999 5665545589999999999
Q ss_pred CCcccccCCCCccCCCcCceEeccCCcccccCCccccccccCcccCCCccccccCcccccccccccccccceeEEEeecc
Q 042537 536 SNKFHGNIPFQVCQLSYIQILDLSLNNISGIIPKCLNNFTGMAQKSSSNLAITSNYTFERQGIEFLESYVDNVVLTWKGS 615 (789)
Q Consensus 536 ~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 615 (789)
+|++++..+..|..+++|+.|+|++|++++..|..|..+++|
T Consensus 97 ~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L-------------------------------------- 138 (361)
T 2xot_A 97 SNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQL-------------------------------------- 138 (361)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTC--------------------------------------
T ss_pred CCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccC--------------------------------------
Confidence 999998888889999999999999999998888888777666
Q ss_pred ccccccccCceeEEEcccCccccccchhh---hccccCcEEEccCCcceeecCcccccCCC--CCEEeCCCCccccc
Q 042537 616 QHEYRSTLGLVKILDFSMNKLSGTIPEEI---MDLVGLVALNLSRNNLTGQITPKIDQLKS--LDFLDLSQNQFVGG 687 (789)
Q Consensus 616 ~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~---~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~--L~~L~Ls~N~l~~~ 687 (789)
+.|+|++|++++..+..| ..+++|+.|+|++|+|++..+..+..++. ++.|+|++|.+...
T Consensus 139 -----------~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C~ 204 (361)
T 2xot_A 139 -----------QKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLECD 204 (361)
T ss_dssp -----------CEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEECC
T ss_pred -----------CEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCccCC
Confidence 899999999996555555 67999999999999999766677888887 48999999999753
No 106
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.77 E-value=2.6e-18 Score=176.18 Aligned_cols=78 Identities=24% Similarity=0.296 Sum_probs=51.5
Q ss_pred eEEEcccCccccccchhhhccccCcEEEccCCcceeecCcccccCCCCCEEeCCCCcccccCchhhhcCCCCCeEeccCC
Q 042537 627 KILDFSMNKLSGTIPEEIMDLVGLVALNLSRNNLTGQITPKIDQLKSLDFLDLSQNQFVGGIPSSLCQLSRLSVMNLSYN 706 (789)
Q Consensus 627 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N 706 (789)
+.|++++|++++. ..+..+++|+.|++++|++++..| +..+++|+.|++++|++++. | .+..+++|+.|++++|
T Consensus 137 ~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~l-~-~l~~l~~L~~L~l~~n 210 (291)
T 1h6t_A 137 ESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELFSQ 210 (291)
T ss_dssp CEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEEEEEE
T ss_pred CEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCCC-h-hhccCCCCCEEECcCC
Confidence 6666666666643 456667777777777777765433 66777777777777777643 3 3667777777777777
Q ss_pred cccc
Q 042537 707 NLSG 710 (789)
Q Consensus 707 ~l~~ 710 (789)
+++.
T Consensus 211 ~i~~ 214 (291)
T 1h6t_A 211 ECLN 214 (291)
T ss_dssp EEEC
T ss_pred cccC
Confidence 7654
No 107
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.77 E-value=2.8e-18 Score=167.99 Aligned_cols=156 Identities=21% Similarity=0.209 Sum_probs=112.2
Q ss_pred EEEccCCeeeeeCCcCccCCCCCcEEeCCCCcccccCchhhhhcCCCCcEEEcCCCcccccCCCCccCCCcCceEeccCC
Q 042537 482 TLSLYNNSLIGELPSFFKSCSQLILMDLGKNGLSGEIPTWIGEGLPKLVVLSLKSNKFHGNIPFQVCQLSYIQILDLSLN 561 (789)
Q Consensus 482 ~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N 561 (789)
.+++++|.++. +|..+. ..+++|++++|++++..+...+..+++|++|++++|++++..+..|.++++|++|++++|
T Consensus 15 ~l~~s~n~l~~-iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 91 (220)
T 2v70_A 15 TVDCSNQKLNK-IPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91 (220)
T ss_dssp EEECCSSCCSS-CCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred EeEeCCCCccc-CccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence 45555555542 233221 234566666666653334333445677777777777777666667777888888888888
Q ss_pred cccccCCccccccccCcccCCCccccccCcccccccccccccccceeEEEeeccccccccccCceeEEEcccCccccccc
Q 042537 562 NISGIIPKCLNNFTGMAQKSSSNLAITSNYTFERQGIEFLESYVDNVVLTWKGSQHEYRSTLGLVKILDFSMNKLSGTIP 641 (789)
Q Consensus 562 ~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p 641 (789)
++++..+..|..+++| +.|+|++|++++..|
T Consensus 92 ~l~~~~~~~~~~l~~L-------------------------------------------------~~L~Ls~N~l~~~~~ 122 (220)
T 2v70_A 92 RLENVQHKMFKGLESL-------------------------------------------------KTLMLRSNRITCVGN 122 (220)
T ss_dssp CCCCCCGGGGTTCSSC-------------------------------------------------CEEECTTSCCCCBCT
T ss_pred ccCccCHhHhcCCcCC-------------------------------------------------CEEECCCCcCCeECH
Confidence 8877766666665555 788888888887778
Q ss_pred hhhhccccCcEEEccCCcceeecCcccccCCCCCEEeCCCCcccccCc
Q 042537 642 EEIMDLVGLVALNLSRNNLTGQITPKIDQLKSLDFLDLSQNQFVGGIP 689 (789)
Q Consensus 642 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p 689 (789)
..|..+++|++|+|++|++++..|..|..+++|+.|+|++|.+.+..+
T Consensus 123 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 170 (220)
T 2v70_A 123 DSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCY 170 (220)
T ss_dssp TSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGG
T ss_pred hHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCc
Confidence 888889999999999999998888889999999999999999986554
No 108
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.77 E-value=1e-18 Score=179.22 Aligned_cols=173 Identities=24% Similarity=0.359 Sum_probs=112.1
Q ss_pred ccCCCCcEEEcCCCcCcccCCccccccCcccEEEccCCeeeeeCCcCccCCCCCcEEeCCCCcccccCchhhhhcCCCCc
Q 042537 451 MQFDRLAVLSLANNFFSGKIPKSMGFLHSIQTLSLYNNSLIGELPSFFKSCSQLILMDLGKNGLSGEIPTWIGEGLPKLV 530 (789)
Q Consensus 451 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~l~~L~ 530 (789)
..+++|+.|++++|.+... + .+..+++|++|++++|++++..+ +..+++|++|++++|.++ .+|. +. .+++|+
T Consensus 43 ~~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~-~~~~-l~-~l~~L~ 115 (291)
T 1h6t_A 43 NELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVK-DLSS-LK-DLKKLK 115 (291)
T ss_dssp HHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-CGGG-GT-TCTTCC
T ss_pred hhcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCC-CChh-hc-cCCCCC
Confidence 4455566666666666533 2 35556666666666666664433 666666666666666665 3443 32 566777
Q ss_pred EEEcCCCcccccCCCCccCCCcCceEeccCCcccccCCccccccccCcccCCCccccccCcccccccccccccccceeEE
Q 042537 531 VLSLKSNKFHGNIPFQVCQLSYIQILDLSLNNISGIIPKCLNNFTGMAQKSSSNLAITSNYTFERQGIEFLESYVDNVVL 610 (789)
Q Consensus 531 ~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 610 (789)
+|++++|++++. ..+..+++|+.|++++|++++. ..+..+++
T Consensus 116 ~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~---------------------------------- 157 (291)
T 1h6t_A 116 SLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTK---------------------------------- 157 (291)
T ss_dssp EEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTT----------------------------------
T ss_pred EEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCC----------------------------------
Confidence 777777776643 3466677777777777777644 23333333
Q ss_pred EeeccccccccccCceeEEEcccCccccccchhhhccccCcEEEccCCcceeecCcccccCCCCCEEeCCCCccccc
Q 042537 611 TWKGSQHEYRSTLGLVKILDFSMNKLSGTIPEEIMDLVGLVALNLSRNNLTGQITPKIDQLKSLDFLDLSQNQFVGG 687 (789)
Q Consensus 611 ~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 687 (789)
|+.|++++|++++..| +..+++|+.|+|++|++++ ++ .+..+++|+.|++++|+++..
T Consensus 158 ---------------L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~-l~-~l~~l~~L~~L~l~~n~i~~~ 215 (291)
T 1h6t_A 158 ---------------LDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECLNK 215 (291)
T ss_dssp ---------------CSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEEEEEECC
T ss_pred ---------------CCEEEccCCccccchh--hcCCCccCEEECCCCcCCC-Ch-hhccCCCCCEEECcCCcccCC
Confidence 3778888888875544 7788888888888888875 33 478888888888888888753
No 109
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.74 E-value=1.8e-17 Score=162.20 Aligned_cols=141 Identities=21% Similarity=0.260 Sum_probs=91.5
Q ss_pred CEEEcCCCccccCCCcccccCCCCcEEEcCCCcCcccCCccccccCcccEEEccCCeeeeeCCcCccCCCCCcEEeCCCC
Q 042537 433 EFLDLSNNILSGRLPDCWMQFDRLAVLSLANNFFSGKIPKSMGFLHSIQTLSLYNNSLIGELPSFFKSCSQLILMDLGKN 512 (789)
Q Consensus 433 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n 512 (789)
+.++.+++.++ .+|..+. ++++.|++++|++++..+..|..+++|++|++++|++++..|..|.++++|++|++++|
T Consensus 14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 45666666665 3444332 45666677777666666666666667777777777776666666777777777777777
Q ss_pred cccccCchhhhhcCCCCcEEEcCCCcccccCCCCccCCCcCceEeccCCcccccCCccccccccC
Q 042537 513 GLSGEIPTWIGEGLPKLVVLSLKSNKFHGNIPFQVCQLSYIQILDLSLNNISGIIPKCLNNFTGM 577 (789)
Q Consensus 513 ~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L 577 (789)
+++ .+|...+.++++|++|+|++|++++..+..|..+++|++|++++|++++..+..|..+++|
T Consensus 91 ~l~-~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 154 (220)
T 2v9t_B 91 KIT-ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAI 154 (220)
T ss_dssp CCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTC
T ss_pred cCC-ccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCC
Confidence 776 6666555566777777777777776666667777777777777777766655555544444
No 110
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.74 E-value=3e-18 Score=163.94 Aligned_cols=110 Identities=24% Similarity=0.327 Sum_probs=73.0
Q ss_pred eEEEcccCccccccchhhhccccCcEEEccCCcceeecCcccccCCCCCEEeCCCCcccccCchhhhcCCCCCeEeccCC
Q 042537 627 KILDFSMNKLSGTIPEEIMDLVGLVALNLSRNNLTGQITPKIDQLKSLDFLDLSQNQFVGGIPSSLCQLSRLSVMNLSYN 706 (789)
Q Consensus 627 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N 706 (789)
+.|++++|++++..|..|..+++|++|+|++|+|++..+..|..+++|+.|+|++|++++..|..|..+++|++|++++|
T Consensus 57 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 136 (192)
T 1w8a_A 57 VKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136 (192)
T ss_dssp CEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTC
T ss_pred CEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCC
Confidence 66666666666666667777777777777777777766666777777777777777777777777777777777777777
Q ss_pred cccccCCCCCccccccccccCCCCCCCCCC
Q 042537 707 NLSGKIPLGTQLQSFNASVYAGNPELCGLP 736 (789)
Q Consensus 707 ~l~~~~p~~~~~~~~~~~~~~~n~~lc~~~ 736 (789)
++.|.++.......+....+.++...|+.|
T Consensus 137 ~l~c~c~l~~~~~~l~~~~~~~~~~~C~~P 166 (192)
T 1w8a_A 137 PFNCNCHLAWFAEWLRKKSLNGGAARCGAP 166 (192)
T ss_dssp CBCCSGGGHHHHHHHHHHCCSGGGCBBCSS
T ss_pred CccCcCcchHHHHHHHHcCCCCCCCCCCCC
Confidence 777776643222222222344444555543
No 111
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.74 E-value=5.3e-18 Score=190.55 Aligned_cols=190 Identities=23% Similarity=0.264 Sum_probs=124.7
Q ss_pred CcEEEcCCCcCccccchhcccCCCCCCEEEcCCCccccCCCcccccCCCCcEEEcCCCcCcccCCccccccCcccEEEcc
Q 042537 407 ASVLNLSRNKFSESISFLCSINGHKLEFLDLSNNILSGRLPDCWMQFDRLAVLSLANNFFSGKIPKSMGFLHSIQTLSLY 486 (789)
Q Consensus 407 L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 486 (789)
+..+.+..+.+.+..+.... +.|+.|++++|.+... + .+..+++|+.|+|++|.+.+..+ +..+++|+.|+|+
T Consensus 23 l~~l~l~~~~i~~~~~~~~L---~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls 95 (605)
T 1m9s_A 23 TIKDNLKKKSVTDAVTQNEL---NSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLD 95 (605)
T ss_dssp HHHHHTTCSCTTSEECHHHH---TTCCCCBCTTCCCCCC-T-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECC
T ss_pred HHHHhccCCCcccccchhcC---CCCCEEECcCCCCCCC-h-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECc
Confidence 34455566666555443222 6777788888877643 3 47777788888888887775444 7777778888888
Q ss_pred CCeeeeeCCcCccCCCCCcEEeCCCCcccccCchhhhhcCCCCcEEEcCCCcccccCCCCccCCCcCceEeccCCccccc
Q 042537 487 NNSLIGELPSFFKSCSQLILMDLGKNGLSGEIPTWIGEGLPKLVVLSLKSNKFHGNIPFQVCQLSYIQILDLSLNNISGI 566 (789)
Q Consensus 487 ~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 566 (789)
+|.+.+. ..+..+++|+.|+|++|.+. .++. +. .+++|+.|+|++|++++. ..+..+++|+.|+|++|.+++.
T Consensus 96 ~N~l~~l--~~l~~l~~L~~L~Ls~N~l~-~l~~-l~-~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~ 168 (605)
T 1m9s_A 96 ENKIKDL--SSLKDLKKLKSLSLEHNGIS-DING-LV-HLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDI 168 (605)
T ss_dssp SSCCCCC--TTSTTCTTCCEEECTTSCCC-CCGG-GG-GCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCC
T ss_pred CCCCCCC--hhhccCCCCCEEEecCCCCC-CCcc-cc-CCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCc
Confidence 8777642 25777777777777777777 4443 33 577777777777777754 4566777777777777777655
Q ss_pred CCccccccccCcccCCCccccccCcccccccccccccccceeEEEeeccccccccccCceeEEEcccCccccccchhhhc
Q 042537 567 IPKCLNNFTGMAQKSSSNLAITSNYTFERQGIEFLESYVDNVVLTWKGSQHEYRSTLGLVKILDFSMNKLSGTIPEEIMD 646 (789)
Q Consensus 567 ~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~ 646 (789)
.| +..+++| +.|+|++|++++. | .+..
T Consensus 169 ~~--l~~l~~L-------------------------------------------------~~L~Ls~N~i~~l-~-~l~~ 195 (605)
T 1m9s_A 169 VP--LAGLTKL-------------------------------------------------QNLYLSKNHISDL-R-ALAG 195 (605)
T ss_dssp GG--GTTCTTC-------------------------------------------------CEEECCSSCCCBC-G-GGTT
T ss_pred hh--hccCCCC-------------------------------------------------CEEECcCCCCCCC-h-HHcc
Confidence 44 3333333 6777777777643 3 4666
Q ss_pred cccCcEEEccCCcceee
Q 042537 647 LVGLVALNLSRNNLTGQ 663 (789)
Q Consensus 647 l~~L~~L~Ls~N~l~~~ 663 (789)
+++|+.|+|++|++++.
T Consensus 196 l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 196 LKNLDVLELFSQECLNK 212 (605)
T ss_dssp CTTCSEEECCSEEEECC
T ss_pred CCCCCEEEccCCcCcCC
Confidence 77777777777777643
No 112
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.74 E-value=1.4e-17 Score=187.12 Aligned_cols=148 Identities=26% Similarity=0.281 Sum_probs=80.8
Q ss_pred CCCCcEEEcCCCcCccccchhcccCCCCCCEEEcCCCccccCCCcccccCCCCcEEEcCCCcCcccCCccccccCcccEE
Q 042537 404 PSNASVLNLSRNKFSESISFLCSINGHKLEFLDLSNNILSGRLPDCWMQFDRLAVLSLANNFFSGKIPKSMGFLHSIQTL 483 (789)
Q Consensus 404 ~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 483 (789)
+..|+.|++++|.+..... +. .+++|+.|+|++|.+++..+ +..+++|+.|+|++|.+.+ ++ .+..+++|+.|
T Consensus 42 L~~L~~L~l~~n~i~~l~~-l~--~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L 114 (605)
T 1m9s_A 42 LNSIDQIIANNSDIKSVQG-IQ--YLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-LS-SLKDLKKLKSL 114 (605)
T ss_dssp HTTCCCCBCTTCCCCCCTT-GG--GCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-CT-TSTTCTTCCEE
T ss_pred CCCCCEEECcCCCCCCChH-Hc--cCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-Ch-hhccCCCCCEE
Confidence 4455666666665554432 11 12556666666666654333 5556666666666666653 22 45556666666
Q ss_pred EccCCeeeeeCCcCccCCCCCcEEeCCCCcccccCchhhhhcCCCCcEEEcCCCcccccCCCCccCCCcCceEeccCCcc
Q 042537 484 SLYNNSLIGELPSFFKSCSQLILMDLGKNGLSGEIPTWIGEGLPKLVVLSLKSNKFHGNIPFQVCQLSYIQILDLSLNNI 563 (789)
Q Consensus 484 ~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l 563 (789)
+|++|.+.+. ..+..+++|+.|+|++|.++ .+ ..+. .+++|+.|+|++|++.+..| +..+++|+.|+|++|++
T Consensus 115 ~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~-~l-~~l~-~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i 187 (605)
T 1m9s_A 115 SLEHNGISDI--NGLVHLPQLESLYLGNNKIT-DI-TVLS-RLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHI 187 (605)
T ss_dssp ECTTSCCCCC--GGGGGCTTCSEEECCSSCCC-CC-GGGG-SCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred EecCCCCCCC--ccccCCCccCEEECCCCccC-Cc-hhhc-ccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCC
Confidence 6666665542 23555666666666666665 33 2222 45666666666666654443 55566666666666655
Q ss_pred cc
Q 042537 564 SG 565 (789)
Q Consensus 564 ~~ 565 (789)
++
T Consensus 188 ~~ 189 (605)
T 1m9s_A 188 SD 189 (605)
T ss_dssp CB
T ss_pred CC
Confidence 54
No 113
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.73 E-value=4.9e-17 Score=160.33 Aligned_cols=153 Identities=19% Similarity=0.133 Sum_probs=130.5
Q ss_pred cEEEcCCCcCccccchhcccCCCCCCEEEcCCCccccCCCcccccCCCCcEEEcCCCcCcccCCccccccCcccEEEccC
Q 042537 408 SVLNLSRNKFSESISFLCSINGHKLEFLDLSNNILSGRLPDCWMQFDRLAVLSLANNFFSGKIPKSMGFLHSIQTLSLYN 487 (789)
Q Consensus 408 ~~L~l~~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 487 (789)
+.++.+++.+...+.... ++|++|++++|.+++..+..|..+++|+.|++++|++....+..|..+++|++|++++
T Consensus 22 ~~v~c~~~~l~~ip~~~~----~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 22 TTVDCRSKRHASVPAGIP----TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp TEEECTTSCCSSCCSCCC----TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEeEccCCCcCccCCCCC----CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence 345555555544443222 6789999999999988888999999999999999999877777889999999999999
Q ss_pred CeeeeeCCcCccCCCCCcEEeCCCCcccccCchhhhhcCCCCcEEEcCCCcccccCCCCccCCCcCceEeccCCccccc
Q 042537 488 NSLIGELPSFFKSCSQLILMDLGKNGLSGEIPTWIGEGLPKLVVLSLKSNKFHGNIPFQVCQLSYIQILDLSLNNISGI 566 (789)
Q Consensus 488 n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 566 (789)
|++++..+..|..+++|++|++++|+++ .+|..+. .+++|+.|++++|++++..+..+..+++|+.|++++|++...
T Consensus 98 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 174 (229)
T 3e6j_A 98 NQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIE-RLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCE 174 (229)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGG-GCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTT
T ss_pred CcCCccChhHhCcchhhCeEeccCCccc-ccCcccc-cCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCC
Confidence 9999888888899999999999999999 8998886 799999999999999977777889999999999999998743
No 114
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.73 E-value=1.4e-17 Score=160.17 Aligned_cols=152 Identities=16% Similarity=0.216 Sum_probs=97.1
Q ss_pred CCCCcEEeCCCCcccccCchhhhhcCCCCcEEEcCCCcccccCCCCccCCCcCceEeccCCcccccCCccccccccCccc
Q 042537 501 CSQLILMDLGKNGLSGEIPTWIGEGLPKLVVLSLKSNKFHGNIPFQVCQLSYIQILDLSLNNISGIIPKCLNNFTGMAQK 580 (789)
Q Consensus 501 l~~L~~L~ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l 580 (789)
+++|+.|++++|.++ .+| .+. .+++|++|++++|.+.. +..+..+++|++|++++|++++..+..+..+++|
T Consensus 43 l~~L~~L~l~~n~i~-~l~-~l~-~l~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L--- 114 (197)
T 4ezg_A 43 MNSLTYITLANINVT-DLT-GIE-YAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSL--- 114 (197)
T ss_dssp HHTCCEEEEESSCCS-CCT-TGG-GCTTCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTC---
T ss_pred cCCccEEeccCCCcc-ChH-HHh-cCCCCCEEEccCCCCCc--chhhhcCCCCCEEEeECCccCcccChhhcCCCCC---
Confidence 344444555555544 444 222 45555555555554431 2245566666666666666665555555444444
Q ss_pred CCCccccccCcccccccccccccccceeEEEeeccccccccccCceeEEEcccCccccccchhhhccccCcEEEccCCc-
Q 042537 581 SSSNLAITSNYTFERQGIEFLESYVDNVVLTWKGSQHEYRSTLGLVKILDFSMNKLSGTIPEEIMDLVGLVALNLSRNN- 659 (789)
Q Consensus 581 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~- 659 (789)
+.|++++|++++..|..++.+++|++|++++|+
T Consensus 115 ----------------------------------------------~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~ 148 (197)
T 4ezg_A 115 ----------------------------------------------TLLDISHSAHDDSILTKINTLPKVNSIDLSYNGA 148 (197)
T ss_dssp ----------------------------------------------CEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTB
T ss_pred ----------------------------------------------CEEEecCCccCcHhHHHHhhCCCCCEEEccCCCC
Confidence 677777777776677778888888888888887
Q ss_pred ceeecCcccccCCCCCEEeCCCCcccccCchhhhcCCCCCeEeccCCcccc
Q 042537 660 LTGQITPKIDQLKSLDFLDLSQNQFVGGIPSSLCQLSRLSVMNLSYNNLSG 710 (789)
Q Consensus 660 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~ 710 (789)
++ .+| .+..+++|+.|++++|++++. + .+..+++|++|++++|++.+
T Consensus 149 i~-~~~-~l~~l~~L~~L~l~~n~i~~~-~-~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 149 IT-DIM-PLKTLPELKSLNIQFDGVHDY-R-GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp CC-CCG-GGGGCSSCCEEECTTBCCCCC-T-TGGGCSSCCEEEECBC----
T ss_pred cc-ccH-hhcCCCCCCEEECCCCCCcCh-H-HhccCCCCCEEEeeCcccCC
Confidence 55 454 578888888888888888753 3 67888888888888888753
No 115
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.72 E-value=7.8e-18 Score=169.74 Aligned_cols=169 Identities=17% Similarity=0.213 Sum_probs=100.7
Q ss_pred CcccEEEccCCeeeeeCCcCccCCCCCcEEeCCCCcccccCchhhhhcCCCCcEEEcCCCcccccCCCCccCCCcCceEe
Q 042537 478 HSIQTLSLYNNSLIGELPSFFKSCSQLILMDLGKNGLSGEIPTWIGEGLPKLVVLSLKSNKFHGNIPFQVCQLSYIQILD 557 (789)
Q Consensus 478 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 557 (789)
.++..+++++|.++... .+..+++|++|++++|.++ .++ .+. .+++|++|++++|++++..+ +..+++|+.|+
T Consensus 19 ~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~-~l~-~l~-~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~ 91 (263)
T 1xeu_A 19 ANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQ-SLA-GMQ-FFTNLKELHLSHNQISDLSP--LKDLTKLEELS 91 (263)
T ss_dssp HHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCC-CCT-TGG-GCTTCCEEECCSSCCCCCGG--GTTCSSCCEEE
T ss_pred HHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcc-cch-HHh-hCCCCCEEECCCCccCCChh--hccCCCCCEEE
Confidence 33444445555444322 3444555555555555554 444 222 45555566665555554333 55566666666
Q ss_pred ccCCcccccCCccccccccCcccCCCccccccCcccccccccccccccceeEEEeeccccccccccCceeEEEcccCccc
Q 042537 558 LSLNNISGIIPKCLNNFTGMAQKSSSNLAITSNYTFERQGIEFLESYVDNVVLTWKGSQHEYRSTLGLVKILDFSMNKLS 637 (789)
Q Consensus 558 Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~ 637 (789)
+++|++++..+. .. +.|+.|++++|+++
T Consensus 92 L~~N~l~~l~~~--~~--------------------------------------------------~~L~~L~L~~N~l~ 119 (263)
T 1xeu_A 92 VNRNRLKNLNGI--PS--------------------------------------------------ACLSRLFLDNNELR 119 (263)
T ss_dssp CCSSCCSCCTTC--CC--------------------------------------------------SSCCEEECCSSCCS
T ss_pred CCCCccCCcCcc--cc--------------------------------------------------CcccEEEccCCccC
Confidence 666665542110 00 22367777777776
Q ss_pred cccchhhhccccCcEEEccCCcceeecCcccccCCCCCEEeCCCCcccccCchhhhcCCCCCeEeccCCccccc
Q 042537 638 GTIPEEIMDLVGLVALNLSRNNLTGQITPKIDQLKSLDFLDLSQNQFVGGIPSSLCQLSRLSVMNLSYNNLSGK 711 (789)
Q Consensus 638 ~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~ 711 (789)
+ ++ .+..+++|+.|+|++|++++. + .+..+++|+.|++++|++++. ..+..+++|+.|++++|++++.
T Consensus 120 ~-~~-~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 120 D-TD-SLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp B-SG-GGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred C-Ch-hhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence 4 33 477777788888888887753 3 577778888888888888765 5677778888888888887654
No 116
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.72 E-value=2.1e-17 Score=158.07 Aligned_cols=175 Identities=21% Similarity=0.243 Sum_probs=130.2
Q ss_pred cEEeCCCCcccccCchhhhhcCCCCcEEEcCCCcccccCCC-CccCCCcCceEeccCCcccccCCccccccccCcccCCC
Q 042537 505 ILMDLGKNGLSGEIPTWIGEGLPKLVVLSLKSNKFHGNIPF-QVCQLSYIQILDLSLNNISGIIPKCLNNFTGMAQKSSS 583 (789)
Q Consensus 505 ~~L~ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~ 583 (789)
+++++++|+++ .+|..++ .++++|++++|++++..+. .+..+++|++|++++|++++..|..|..+++|
T Consensus 11 ~~l~~s~~~l~-~ip~~~~---~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L------ 80 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIP---LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHI------ 80 (192)
T ss_dssp TEEECTTSCCS-SCCSCCC---TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTC------
T ss_pred CEEEcCCCCcC-cCccCCC---CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccC------
Confidence 67888888886 7887654 3788888888888866654 47888899999999999988888777776666
Q ss_pred ccccccCcccccccccccccccceeEEEeeccccccccccCceeEEEcccCccccccchhhhccccCcEEEccCCcceee
Q 042537 584 NLAITSNYTFERQGIEFLESYVDNVVLTWKGSQHEYRSTLGLVKILDFSMNKLSGTIPEEIMDLVGLVALNLSRNNLTGQ 663 (789)
Q Consensus 584 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 663 (789)
+.|+|++|++++..|..|..+++|++|+|++|++++.
T Consensus 81 -------------------------------------------~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 117 (192)
T 1w8a_A 81 -------------------------------------------QELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCV 117 (192)
T ss_dssp -------------------------------------------CEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEE
T ss_pred -------------------------------------------CEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCee
Confidence 8899999999988888899999999999999999999
Q ss_pred cCcccccCCCCCEEeCCCCcccccCchh-hhcCCCCCeEeccCCcccccCCCCCccccccccccCCCCCCCCCC
Q 042537 664 ITPKIDQLKSLDFLDLSQNQFVGGIPSS-LCQLSRLSVMNLSYNNLSGKIPLGTQLQSFNASVYAGNPELCGLP 736 (789)
Q Consensus 664 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~-l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~n~~lc~~~ 736 (789)
+|..|..+++|+.|+|++|.+.+..+-. +. ..++...+..+...+..|.. ++......+..+...|..+
T Consensus 118 ~~~~~~~l~~L~~L~L~~N~l~c~c~l~~~~--~~l~~~~~~~~~~~C~~P~~--l~~~~l~~l~~~~~~C~~~ 187 (192)
T 1w8a_A 118 MPGSFEHLNSLTSLNLASNPFNCNCHLAWFA--EWLRKKSLNGGAARCGAPSK--VRDVQIKDLPHSEFKCSSE 187 (192)
T ss_dssp CTTSSTTCTTCCEEECTTCCBCCSGGGHHHH--HHHHHHCCSGGGCBBCSSTT--TTTSBGGGSCTTTCCCCCC
T ss_pred CHHHhhcCCCCCEEEeCCCCccCcCcchHHH--HHHHHcCCCCCCCCCCCChH--HcCCChhhCcHhhcCcCCC
Confidence 9999999999999999999998776521 21 11222344555556666643 2222333344555556543
No 117
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.70 E-value=2.1e-19 Score=200.88 Aligned_cols=84 Identities=29% Similarity=0.352 Sum_probs=43.3
Q ss_pred eEEEcccCccccccchhhhccccCcEEEccCCcceeecCcccccCCCCCEEeCCCCcccccC-chhhhcCCCCCeEeccC
Q 042537 627 KILDFSMNKLSGTIPEEIMDLVGLVALNLSRNNLTGQITPKIDQLKSLDFLDLSQNQFVGGI-PSSLCQLSRLSVMNLSY 705 (789)
Q Consensus 627 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~-p~~l~~l~~L~~L~ls~ 705 (789)
+.|+|++|+|+ .+|..|+.+++|+.|+|++|+|++ +| .++.+++|+.|+|++|+|++.+ |..+..+++|+.|++++
T Consensus 466 ~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~ 542 (567)
T 1dce_A 466 THLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQG 542 (567)
T ss_dssp CEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTT
T ss_pred cEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecC
Confidence 44555555554 444455555555555555555553 33 4555555555555555555444 55555555555555555
Q ss_pred CcccccCC
Q 042537 706 NNLSGKIP 713 (789)
Q Consensus 706 N~l~~~~p 713 (789)
|++++.+|
T Consensus 543 N~l~~~~~ 550 (567)
T 1dce_A 543 NSLCQEEG 550 (567)
T ss_dssp SGGGGSSS
T ss_pred CcCCCCcc
Confidence 55554444
No 118
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.70 E-value=6.4e-18 Score=195.05 Aligned_cols=118 Identities=25% Similarity=0.295 Sum_probs=52.8
Q ss_pred CcccccCCCCcEEEcCCCcCcccCCccccccCcccEEEccCCeeeeeCCcCccCCCCCcEEeCCCCcccccCchhhhhcC
Q 042537 447 PDCWMQFDRLAVLSLANNFFSGKIPKSMGFLHSIQTLSLYNNSLIGELPSFFKSCSQLILMDLGKNGLSGEIPTWIGEGL 526 (789)
Q Consensus 447 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~l 526 (789)
+..|..++.|+.|+|++|.+. .+|..+..+++|++|+|++|.++ .+|..|.++++|++|+|++|.|+ .+|..+. .+
T Consensus 217 ~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~-~l 292 (727)
T 4b8c_D 217 KDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELG-SC 292 (727)
T ss_dssp -----CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGG-GG
T ss_pred hhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhc-CC
Confidence 444444555555555555544 33333334444555555555444 34444444444444444444444 4444443 34
Q ss_pred CCCcEEEcCCCcccccCCCCccCCCcCceEeccCCcccccCCc
Q 042537 527 PKLVVLSLKSNKFHGNIPFQVCQLSYIQILDLSLNNISGIIPK 569 (789)
Q Consensus 527 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~ 569 (789)
++|++|+|++|.++ .+|..|..+++|+.|+|++|++++.+|.
T Consensus 293 ~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~ 334 (727)
T 4b8c_D 293 FQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLK 334 (727)
T ss_dssp TTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHH
T ss_pred CCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChH
Confidence 44444444444443 3344444444444444444444444433
No 119
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.70 E-value=4.4e-17 Score=156.74 Aligned_cols=154 Identities=18% Similarity=0.232 Sum_probs=101.1
Q ss_pred cccCcccEEEccCCeeeeeCCcCccCCCCCcEEeCCCCcccccCchhhhhcCCCCcEEEcCCCcccccCCCCccCCCcCc
Q 042537 475 GFLHSIQTLSLYNNSLIGELPSFFKSCSQLILMDLGKNGLSGEIPTWIGEGLPKLVVLSLKSNKFHGNIPFQVCQLSYIQ 554 (789)
Q Consensus 475 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 554 (789)
..+++|++|++++|.+. .+| .+..+++|++|++++|.+. .++ .+. .+++|++|++++|++++..+..+..+++|+
T Consensus 41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~-~~~-~l~-~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 115 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT-NYN-PIS-GLSNLERLRIMGKDVTSDKIPNLSGLTSLT 115 (197)
T ss_dssp HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS-CCG-GGT-TCTTCCEEEEECTTCBGGGSCCCTTCTTCC
T ss_pred hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC-cch-hhh-cCCCCCEEEeECCccCcccChhhcCCCCCC
Confidence 34455566666666555 233 4555666666666666554 333 233 567777777777777766666777777778
Q ss_pred eEeccCCcccccCCccccccccCcccCCCccccccCcccccccccccccccceeEEEeeccccccccccCceeEEEcccC
Q 042537 555 ILDLSLNNISGIIPKCLNNFTGMAQKSSSNLAITSNYTFERQGIEFLESYVDNVVLTWKGSQHEYRSTLGLVKILDFSMN 634 (789)
Q Consensus 555 ~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N 634 (789)
+|++++|.+++..|..+..+++| +.|++++|
T Consensus 116 ~L~Ls~n~i~~~~~~~l~~l~~L-------------------------------------------------~~L~L~~n 146 (197)
T 4ezg_A 116 LLDISHSAHDDSILTKINTLPKV-------------------------------------------------NSIDLSYN 146 (197)
T ss_dssp EEECCSSBCBGGGHHHHTTCSSC-------------------------------------------------CEEECCSC
T ss_pred EEEecCCccCcHhHHHHhhCCCC-------------------------------------------------CEEEccCC
Confidence 88888777776555555544444 77888888
Q ss_pred c-cccccchhhhccccCcEEEccCCcceeecCcccccCCCCCEEeCCCCcccc
Q 042537 635 K-LSGTIPEEIMDLVGLVALNLSRNNLTGQITPKIDQLKSLDFLDLSQNQFVG 686 (789)
Q Consensus 635 ~-l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 686 (789)
+ ++ .+| .+..+++|++|++++|++++ ++ .+..+++|+.|++++|++.+
T Consensus 147 ~~i~-~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 147 GAIT-DIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp TBCC-CCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC----
T ss_pred CCcc-ccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCcccCC
Confidence 7 54 455 57888888888888888875 33 67888888888888888753
No 120
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.69 E-value=1.1e-17 Score=168.50 Aligned_cols=78 Identities=15% Similarity=0.248 Sum_probs=37.4
Q ss_pred CCEEEcCCCccccCCCcccccCCCCcEEEcCCCcCcccCCccccccCcccEEEccCCeeeeeCCcCccCCCCCcEEeCCC
Q 042537 432 LEFLDLSNNILSGRLPDCWMQFDRLAVLSLANNFFSGKIPKSMGFLHSIQTLSLYNNSLIGELPSFFKSCSQLILMDLGK 511 (789)
Q Consensus 432 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~ 511 (789)
+..++++++.+++.. .+..+++|+.|++++|.++. ++ .+..+++|++|++++|++++..+ +..+++|++|++++
T Consensus 21 l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~ 94 (263)
T 1xeu_A 21 AVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNR 94 (263)
T ss_dssp HHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCS
T ss_pred HHHHHhcCCCccccc--chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCC
Confidence 444455555554222 34455555555555555542 22 34445555555555555543322 44455555555555
Q ss_pred Cccc
Q 042537 512 NGLS 515 (789)
Q Consensus 512 n~l~ 515 (789)
|+++
T Consensus 95 N~l~ 98 (263)
T 1xeu_A 95 NRLK 98 (263)
T ss_dssp SCCS
T ss_pred CccC
Confidence 5544
No 121
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.69 E-value=1.6e-19 Score=201.84 Aligned_cols=188 Identities=20% Similarity=0.172 Sum_probs=96.8
Q ss_pred cCCCCCCEEeCCCCCCCCCCCcccccCCCCCCEEecCCCc-------------CCCCCCccccCCCCCcEEe-ccCccCC
Q 042537 72 LKLYHLRHLDLSENDFSGSRIPEFIGSLNKLRYLSLSSAE-------------FEGPIPSQLGNLSRLKYLD-LSYINLN 137 (789)
Q Consensus 72 ~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~-------------i~~~~p~~~~~l~~L~~L~-Ls~n~l~ 137 (789)
..+++|+.|+|++|+++ .+|..++.|++|+.|++++|. +.+..|..++++++|+.|+ ++.|.+.
T Consensus 346 ~~~~~L~~L~Ls~n~L~--~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~ 423 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST--VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD 423 (567)
T ss_dssp STTTTSSSCCCCHHHHH--HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH
T ss_pred ccCccceeccCChhhHH--hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc
Confidence 44556666666666655 356666666666666665543 2333444444455555554 3333322
Q ss_pred CCcchHHhhCCCCCCCEEEcCCCCCCCCccccccccccCCCCCCeEEccCCCCCCCchhHHHhhcCCCcEEEccCCCCcc
Q 042537 138 KSRDWLRIIDKLPSLRTLNLEHCHLPPIIPSDLLHLNFSTSSLGALYLFENSLSSSIYPWLFNISSKLVVLDLDSNLLQG 217 (789)
Q Consensus 138 ~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~i~~ 217 (789)
.+ +.+.+++|.+....+ ..|+.|++++|.+++ +|. +..+ ++|+.|+|++|.++
T Consensus 424 ~L-------------~~l~l~~n~i~~l~~----------~~L~~L~Ls~n~l~~-lp~-~~~l-~~L~~L~Ls~N~l~- 476 (567)
T 1dce_A 424 DL-------------RSKFLLENSVLKMEY----------ADVRVLHLAHKDLTV-LCH-LEQL-LLVTHLDLSHNRLR- 476 (567)
T ss_dssp HH-------------HHHHHHHHHHHHHHH----------TTCSEEECTTSCCSS-CCC-GGGG-TTCCEEECCSSCCC-
T ss_pred hh-------------hhhhhhcccccccCc----------cCceEEEecCCCCCC-CcC-cccc-ccCcEeecCccccc-
Confidence 11 111111222211111 345555555555553 333 3333 36666666666666
Q ss_pred cCchhhhcCCCCcEEECCCCCccEEecCCCcCcccchhhhhCCCCCCEEEccCCCCCCcc-ChhhhhcCCCCcEEEccCC
Q 042537 218 SLLEPFDRMVSLRTLYLGFNELEELFLGKNRLNGTINQWLSRMYKLDALSLSGNSLTGVV-TESVFSELSNLKALHLDDN 296 (789)
Q Consensus 218 ~~~~~~~~l~~L~~L~L~~n~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~-~~~~~~~l~~L~~L~L~~n 296 (789)
.+|..|+++++|+.|+|+ +|.+++ +| .++.+++|++|+|++|++++.. |. .+..+++|+.|++++|
T Consensus 477 ~lp~~~~~l~~L~~L~Ls----------~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~-~l~~l~~L~~L~L~~N 543 (567)
T 1dce_A 477 ALPPALAALRCLEVLQAS----------DNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQ-PLVSCPRLVLLNLQGN 543 (567)
T ss_dssp CCCGGGGGCTTCCEEECC----------SSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTG-GGGGCTTCCEEECTTS
T ss_pred ccchhhhcCCCCCEEECC----------CCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcH-HHhcCCCCCEEEecCC
Confidence 445566666666666666 333333 23 4666666666666666666443 33 4666666666666666
Q ss_pred ccccc
Q 042537 297 SFTLK 301 (789)
Q Consensus 297 ~i~~~ 301 (789)
++++.
T Consensus 544 ~l~~~ 548 (567)
T 1dce_A 544 SLCQE 548 (567)
T ss_dssp GGGGS
T ss_pred cCCCC
Confidence 66543
No 122
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.68 E-value=1.1e-17 Score=193.23 Aligned_cols=202 Identities=21% Similarity=0.175 Sum_probs=81.0
Q ss_pred HHHHHHHHHHhhcCcCC-CCCCCCCCCCCCCCCCCceeeeEecCCCCcEEEEEcCCCCCCCCcccccCccccCCCCCCE-
Q 042537 2 EEEREALLEFKQSLVDE-YGILSSWGREDDKRDCCYWRGVRCSNTTGHVIVLDLQVLVHSEPLKGTISPSLLKLYHLRH- 79 (789)
Q Consensus 2 ~~~~~~ll~~~~~~~~~-~~~~~~w~~~~~~~~~c~w~gv~c~~~~~~v~~l~L~~~~~~~~l~~~l~~~~~~l~~L~~- 79 (789)
+.++++|+++..+...+ ...-..|.. ..+..+.|.++.+. ..++++|+|.+ +.+.. .+..+.....|+.
T Consensus 131 ~~~~~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~s--~~~~~~l~L~~----n~~~~-~~~~~l~~l~Ls~~ 201 (727)
T 4b8c_D 131 DCTKQALMEMADTLTDSKTAKKQQPTG--DSTPSGTATNSAVS--TPLTPKIELFA----NGKDE-ANQALLQHKKLSQY 201 (727)
T ss_dssp -CCCHHHHHHHHHHHHHHTTC-----------------------------------------------------------
T ss_pred ccchhhhhhhhhhcccccCcccCCCcC--CCCccccCCCceec--CCccceEEeeC----CCCCc-chhhHhhcCccCcc
Confidence 34678899998876422 233456752 45567889888775 46788888876 33332 2222222211221
Q ss_pred ----EeCCCCCCCCCCCcccccCCCCCCEEecCCCcCCCCCCccccCCCCCcEEeccCccCCCCcchHHhhCCCCCCCEE
Q 042537 80 ----LDLSENDFSGSRIPEFIGSLNKLRYLSLSSAEFEGPIPSQLGNLSRLKYLDLSYINLNKSRDWLRIIDKLPSLRTL 155 (789)
Q Consensus 80 ----L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L 155 (789)
++++.|.+. ..+..+..+++|++|+|++|.+. .+|..+.++++|++|+|++|.++. +|..|+++++|++|
T Consensus 202 ~i~~~~~~~n~~~--~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~~---lp~~~~~l~~L~~L 275 (727)
T 4b8c_D 202 SIDEDDDIENRMV--MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLTE---LPAEIKNLSNLRVL 275 (727)
T ss_dssp ----------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCSC---CCGGGGGGTTCCEE
T ss_pred cccCcccccccee--cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCcc---cChhhhCCCCCCEE
Confidence 222222222 13455566666666666666665 455555566666666666666664 44556666666666
Q ss_pred EcCCCCCCCCccccccccccCCCCCCeEEccCCCCCCCchhHHHhhcCCCcEEEccCCCCcccCchhhhc
Q 042537 156 NLEHCHLPPIIPSDLLHLNFSTSSLGALYLFENSLSSSIYPWLFNISSKLVVLDLDSNLLQGSLLEPFDR 225 (789)
Q Consensus 156 ~L~~n~l~~~~~~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~ 225 (789)
+|++|.++ .+| ..+..+ ++|++|+|++|.++ .+|..+..+. +|++|+|++|.+++.+|..+..
T Consensus 276 ~Ls~N~l~-~lp--~~~~~l--~~L~~L~L~~N~l~-~lp~~~~~l~-~L~~L~L~~N~l~~~~p~~~~~ 338 (727)
T 4b8c_D 276 DLSHNRLT-SLP--AELGSC--FQLKYFYFFDNMVT-TLPWEFGNLC-NLQFLGVEGNPLEKQFLKILTE 338 (727)
T ss_dssp ECTTSCCS-SCC--SSGGGG--TTCSEEECCSSCCC-CCCSSTTSCT-TCCCEECTTSCCCSHHHHHHHH
T ss_pred eCcCCcCC-ccC--hhhcCC--CCCCEEECCCCCCC-ccChhhhcCC-CccEEeCCCCccCCCChHHHhh
Confidence 66666665 334 223344 66666666666664 5555544333 6666666666666655555543
No 123
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.66 E-value=1.9e-16 Score=151.31 Aligned_cols=88 Identities=27% Similarity=0.302 Sum_probs=74.3
Q ss_pred eEEEcccCccccccchhhhccccCcEEEccCCcceeecCcccccCCCCCEEeCCCCcccccCchhhhcCCCCCeEeccCC
Q 042537 627 KILDFSMNKLSGTIPEEIMDLVGLVALNLSRNNLTGQITPKIDQLKSLDFLDLSQNQFVGGIPSSLCQLSRLSVMNLSYN 706 (789)
Q Consensus 627 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N 706 (789)
+.|++++|+|++..+..|.++++|++|+|++|+|++..|..|..+++|+.|+|++|+|+...+..|..+++|+.|++++|
T Consensus 57 ~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 136 (193)
T 2wfh_A 57 TLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGAN 136 (193)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSS
T ss_pred CEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCC
Confidence 67777777777667777888888999999999998777778889999999999999999777778889999999999999
Q ss_pred cccccCCC
Q 042537 707 NLSGKIPL 714 (789)
Q Consensus 707 ~l~~~~p~ 714 (789)
++.+.+..
T Consensus 137 ~~~C~c~l 144 (193)
T 2wfh_A 137 PLYCDCNM 144 (193)
T ss_dssp CEECSGGG
T ss_pred CeecCCcC
Confidence 99877653
No 124
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.64 E-value=7.4e-16 Score=144.05 Aligned_cols=133 Identities=22% Similarity=0.208 Sum_probs=111.0
Q ss_pred CCCCcEEEcCCCccc-ccCCCCccCCCcCceEeccCCcccccCCccccccccCcccCCCccccccCcccccccccccccc
Q 042537 526 LPKLVVLSLKSNKFH-GNIPFQVCQLSYIQILDLSLNNISGIIPKCLNNFTGMAQKSSSNLAITSNYTFERQGIEFLESY 604 (789)
Q Consensus 526 l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~ 604 (789)
.++|+.|++++|+++ +.+|..+..+++|++|++++|.+++. ..+..+++
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~---------------------------- 72 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPK---------------------------- 72 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSS----------------------------
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCC----------------------------
Confidence 467888888888887 56777788889999999999988765 44444444
Q ss_pred cceeEEEeeccccccccccCceeEEEcccCccccccchhhhccccCcEEEccCCcceeec-CcccccCCCCCEEeCCCCc
Q 042537 605 VDNVVLTWKGSQHEYRSTLGLVKILDFSMNKLSGTIPEEIMDLVGLVALNLSRNNLTGQI-TPKIDQLKSLDFLDLSQNQ 683 (789)
Q Consensus 605 ~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~-p~~~~~l~~L~~L~Ls~N~ 683 (789)
|+.|++++|++++.+|..+..+++|++|+|++|++++.. +..+..+++|+.|++++|+
T Consensus 73 ---------------------L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~ 131 (168)
T 2ell_A 73 ---------------------LKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCE 131 (168)
T ss_dssp ---------------------CCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSG
T ss_pred ---------------------CCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCc
Confidence 489999999999778888888999999999999998642 2788999999999999999
Q ss_pred ccccCc---hhhhcCCCCCeEeccCCccc
Q 042537 684 FVGGIP---SSLCQLSRLSVMNLSYNNLS 709 (789)
Q Consensus 684 l~~~~p---~~l~~l~~L~~L~ls~N~l~ 709 (789)
+++..+ ..+..+++|++|++++|.+.
T Consensus 132 l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 132 VTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp GGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred CcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 997766 58899999999999999886
No 125
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.64 E-value=1.5e-15 Score=158.82 Aligned_cols=219 Identities=12% Similarity=0.052 Sum_probs=138.9
Q ss_pred CCCCEEEcCCCccccCCCcccccCCCCcEEEcCCCcCcccCCccccccCcccEEEccCCee----eeeCCcCccCCCCCc
Q 042537 430 HKLEFLDLSNNILSGRLPDCWMQFDRLAVLSLANNFFSGKIPKSMGFLHSIQTLSLYNNSL----IGELPSFFKSCSQLI 505 (789)
Q Consensus 430 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l----~~~~~~~~~~l~~L~ 505 (789)
++|+.+++.+ .++.+.+.+|.++++|+.+++.+|.+..+.+.+|..+.++..+....+.. .......|.++..|+
T Consensus 101 ~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~ 179 (329)
T 3sb4_A 101 QTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLE 179 (329)
T ss_dssp TTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCE
T ss_pred CCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccc
Confidence 6677777766 66655666677777777777777776666666666666666555544221 112233455555555
Q ss_pred -EEeCCCCcccccCchhhhhc---CCCCcEEEcCCCcccccCCCCccCCCcCceEeccCCcccccCCccccccccCcccC
Q 042537 506 -LMDLGKNGLSGEIPTWIGEG---LPKLVVLSLKSNKFHGNIPFQVCQLSYIQILDLSLNNISGIIPKCLNNFTGMAQKS 581 (789)
Q Consensus 506 -~L~ls~n~l~~~~p~~~~~~---l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~ 581 (789)
.+++.... .++..++.. ..+++.+.+.++-...........+++|+.+++++|+++.+.+.+|.++.+|
T Consensus 180 ~~i~~~~~~---~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L---- 252 (329)
T 3sb4_A 180 TTIQVGAMG---KLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYL---- 252 (329)
T ss_dssp EEEEECTTC---CHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTC----
T ss_pred eeEEecCCC---cHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCC----
Confidence 44444321 233333221 2344444444331110000001136788888888888887777777777666
Q ss_pred CCccccccCcccccccccccccccceeEEEeeccccccccccCceeEEEcccCccccccchhhhccccCc-EEEccCCcc
Q 042537 582 SSNLAITSNYTFERQGIEFLESYVDNVVLTWKGSQHEYRSTLGLVKILDFSMNKLSGTIPEEIMDLVGLV-ALNLSRNNL 660 (789)
Q Consensus 582 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~-~L~Ls~N~l 660 (789)
+.+++++| ++.+.+..|.++++|+ .+++.+ ++
T Consensus 253 ---------------------------------------------~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l 285 (329)
T 3sb4_A 253 ---------------------------------------------LKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SV 285 (329)
T ss_dssp ---------------------------------------------CEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TC
T ss_pred ---------------------------------------------CEEECCcc-cceehHHHhhCChhccEEEEEcc-cc
Confidence 77888877 6666667788888888 888887 77
Q ss_pred eeecCcccccCCCCCEEeCCCCcccccCchhhhcCCCCCeEec
Q 042537 661 TGQITPKIDQLKSLDFLDLSQNQFVGGIPSSLCQLSRLSVMNL 703 (789)
Q Consensus 661 ~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l 703 (789)
+...+.+|.++++|+.+++++|+++.+.+..|.++++|+.++.
T Consensus 286 ~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 286 TAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp CEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred eEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 7666788888888888888888888777788888888888763
No 126
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.63 E-value=9.6e-16 Score=140.08 Aligned_cols=129 Identities=19% Similarity=0.210 Sum_probs=104.6
Q ss_pred CCCCcEEEcCCCccc-ccCCCCccCCCcCceEeccCCcccccCCccccccccCcccCCCccccccCcccccccccccccc
Q 042537 526 LPKLVVLSLKSNKFH-GNIPFQVCQLSYIQILDLSLNNISGIIPKCLNNFTGMAQKSSSNLAITSNYTFERQGIEFLESY 604 (789)
Q Consensus 526 l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~ 604 (789)
.++|+.|++++|.++ +.+|..+..+++|+.|++++|.+++. ..+..+++
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~---------------------------- 65 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNK---------------------------- 65 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTT----------------------------
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCC----------------------------
Confidence 357888888888887 66777778888888888888888755 34444433
Q ss_pred cceeEEEeeccccccccccCceeEEEcccCccccccchhhhccccCcEEEccCCcceee-cCcccccCCCCCEEeCCCCc
Q 042537 605 VDNVVLTWKGSQHEYRSTLGLVKILDFSMNKLSGTIPEEIMDLVGLVALNLSRNNLTGQ-ITPKIDQLKSLDFLDLSQNQ 683 (789)
Q Consensus 605 ~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L~Ls~N~ 683 (789)
|+.|++++|++++.+|..+..+++|++|++++|++++. .+..+..+++|+.|++++|+
T Consensus 66 ---------------------L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~ 124 (149)
T 2je0_A 66 ---------------------LKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCE 124 (149)
T ss_dssp ---------------------CCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCG
T ss_pred ---------------------CCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCc
Confidence 48899999999877888888899999999999999863 34788999999999999999
Q ss_pred ccccCc---hhhhcCCCCCeEeccC
Q 042537 684 FVGGIP---SSLCQLSRLSVMNLSY 705 (789)
Q Consensus 684 l~~~~p---~~l~~l~~L~~L~ls~ 705 (789)
+++..+ ..+..+++|++||+++
T Consensus 125 l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 125 VTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp GGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred ccchHHHHHHHHHHCCCcccccCCC
Confidence 997766 5789999999999874
No 127
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.61 E-value=8.7e-16 Score=160.73 Aligned_cols=250 Identities=12% Similarity=0.022 Sum_probs=169.2
Q ss_pred CCCCcEEEcCCCcCccccchhcccCCCCCCEEEcCCCccccCCCccccc--------CCCCcEEEcCCCcCcccCCcccc
Q 042537 404 PSNASVLNLSRNKFSESISFLCSINGHKLEFLDLSNNILSGRLPDCWMQ--------FDRLAVLSLANNFFSGKIPKSMG 475 (789)
Q Consensus 404 ~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~--------l~~L~~L~L~~n~l~~~~~~~~~ 475 (789)
+++|+.|++++|++.......... +.+..+.+..|. +.+.+|.+ +++|+.|++.+ .++.+.+.+|.
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~~--~~~~~~~~~~~~---I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~ 121 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGTY--PNGKFYIYMANF---VPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFK 121 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSSS--GGGCCEEECTTE---ECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTT
T ss_pred hccCeEEecCcceeEEecCccccc--cccccccccccc---cCHHHhcccccccccccCCCcEEECCc-cccchhHHHhh
Confidence 567888888888887211111110 223455555553 33456667 88888888888 77777777888
Q ss_pred ccCcccEEEccCCeeeeeCCcCccCCCCCcEEeCCCCccc---ccCchhhhhcCCCCc-EEEcCCCcc-cccCCCCccCC
Q 042537 476 FLHSIQTLSLYNNSLIGELPSFFKSCSQLILMDLGKNGLS---GEIPTWIGEGLPKLV-VLSLKSNKF-HGNIPFQVCQL 550 (789)
Q Consensus 476 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~---~~~p~~~~~~l~~L~-~L~L~~n~l-~~~~~~~~~~l 550 (789)
++++|+.+++++|.+..+.+..|.++.++..+....+... ..+....+.++..|+ .+.+....- ...........
T Consensus 122 ~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~ 201 (329)
T 3sb4_A 122 GCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQP 201 (329)
T ss_dssp TCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCG
T ss_pred cCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccCc
Confidence 8888888888888888788888888887777777664321 123333333556666 444443211 10000111134
Q ss_pred CcCceEeccCCcccccCCccccccccCcccCCCccccccCcccccccccccccccceeEEEeeccccccccccCceeEEE
Q 042537 551 SYIQILDLSLNNISGIIPKCLNNFTGMAQKSSSNLAITSNYTFERQGIEFLESYVDNVVLTWKGSQHEYRSTLGLVKILD 630 (789)
Q Consensus 551 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~ 630 (789)
.+++.+.+.++-.. ..+.. +...++.|+.++
T Consensus 202 ~~~~~l~~~~~l~~----~~~~~---------------------------------------------l~~~~~~L~~l~ 232 (329)
T 3sb4_A 202 RDINFLTIEGKLDN----ADFKL---------------------------------------------IRDYMPNLVSLD 232 (329)
T ss_dssp GGCSEEEEEECCCH----HHHHH---------------------------------------------HHHHCTTCCEEE
T ss_pred cccceEEEeeeecH----HHHHH---------------------------------------------HHHhcCCCeEEE
Confidence 55666666554111 01110 001245569999
Q ss_pred cccCccccccchhhhccccCcEEEccCCcceeecCcccccCCCCC-EEeCCCCcccccCchhhhcCCCCCeEeccCCccc
Q 042537 631 FSMNKLSGTIPEEIMDLVGLVALNLSRNNLTGQITPKIDQLKSLD-FLDLSQNQFVGGIPSSLCQLSRLSVMNLSYNNLS 709 (789)
Q Consensus 631 Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~-~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~ 709 (789)
+++|+++.+.+..|.++++|++|+|++| ++...+.+|.++++|+ .+++.+ +++.+.+.+|.++++|+.+++++|.+.
T Consensus 233 L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~ 310 (329)
T 3sb4_A 233 ISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKIT 310 (329)
T ss_dssp CTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCC
T ss_pred CCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccC
Confidence 9999999777788999999999999998 8877788899999999 999999 888788899999999999999999887
Q ss_pred c
Q 042537 710 G 710 (789)
Q Consensus 710 ~ 710 (789)
.
T Consensus 311 ~ 311 (329)
T 3sb4_A 311 T 311 (329)
T ss_dssp E
T ss_pred c
Confidence 3
No 128
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.61 E-value=2.3e-15 Score=141.99 Aligned_cols=88 Identities=24% Similarity=0.206 Sum_probs=67.0
Q ss_pred eEEEcccCccccccchhhhccccCcEEEccCCcceeecCcccccCCCCCEEeCCCCcccccCchhhhcCCCCCeEeccCC
Q 042537 627 KILDFSMNKLSGTIPEEIMDLVGLVALNLSRNNLTGQITPKIDQLKSLDFLDLSQNQFVGGIPSSLCQLSRLSVMNLSYN 706 (789)
Q Consensus 627 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N 706 (789)
++|++++|++++..+..|..+++|++|+|++|++++..+..+..+++|+.|++++|++++..+..+..+++|++|++++|
T Consensus 55 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 134 (177)
T 2o6r_A 55 TKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 134 (177)
T ss_dssp SEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCC
Confidence 56666666666555555677788888888888888666666788888888888888888766666778888888888888
Q ss_pred cccccCCC
Q 042537 707 NLSGKIPL 714 (789)
Q Consensus 707 ~l~~~~p~ 714 (789)
++.|.+|.
T Consensus 135 ~~~~~~~~ 142 (177)
T 2o6r_A 135 PWDCSCPR 142 (177)
T ss_dssp CBCCCHHH
T ss_pred CeeccCcc
Confidence 88887763
No 129
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.59 E-value=5.2e-15 Score=141.26 Aligned_cols=129 Identities=24% Similarity=0.346 Sum_probs=103.1
Q ss_pred cEEeCCCCcccccCchhhhhcCCCCcEEEcCCCcccccCCCCccCCCcCceEeccCCcccccCCccccccccCcccCCCc
Q 042537 505 ILMDLGKNGLSGEIPTWIGEGLPKLVVLSLKSNKFHGNIPFQVCQLSYIQILDLSLNNISGIIPKCLNNFTGMAQKSSSN 584 (789)
Q Consensus 505 ~~L~ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~ 584 (789)
+.+++++|.++ .+|..+. ++|++|++++|+++ .+|..+.++++|+.|++++|.+++..+..|..+++|
T Consensus 13 ~~l~~~~~~l~-~ip~~~~---~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L------- 80 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGIP---RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQL------- 80 (193)
T ss_dssp TEEECTTSCCS-SCCSCCC---TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTC-------
T ss_pred CEEEcCCCCCC-cCCCCCC---CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCC-------
Confidence 46777777777 7776543 57788888888887 566777888888888888888887777767666555
Q ss_pred cccccCcccccccccccccccceeEEEeeccccccccccCceeEEEcccCccccccchhhhccccCcEEEccCCcceeec
Q 042537 585 LAITSNYTFERQGIEFLESYVDNVVLTWKGSQHEYRSTLGLVKILDFSMNKLSGTIPEEIMDLVGLVALNLSRNNLTGQI 664 (789)
Q Consensus 585 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~ 664 (789)
+.|+|++|++++..|..|..+++|+.|+|++|+|++..
T Consensus 81 ------------------------------------------~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~ 118 (193)
T 2wfh_A 81 ------------------------------------------LTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVP 118 (193)
T ss_dssp ------------------------------------------CEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCC
T ss_pred ------------------------------------------CEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeC
Confidence 78888888888777788999999999999999999766
Q ss_pred CcccccCCCCCEEeCCCCccccc
Q 042537 665 TPKIDQLKSLDFLDLSQNQFVGG 687 (789)
Q Consensus 665 p~~~~~l~~L~~L~Ls~N~l~~~ 687 (789)
+..|..+++|+.|+|++|.+...
T Consensus 119 ~~~~~~l~~L~~L~L~~N~~~C~ 141 (193)
T 2wfh_A 119 EGAFNDLSALSHLAIGANPLYCD 141 (193)
T ss_dssp TTTTTTCTTCCEEECCSSCEECS
T ss_pred hhhhhcCccccEEEeCCCCeecC
Confidence 66788999999999999998753
No 130
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.57 E-value=1e-14 Score=137.60 Aligned_cols=133 Identities=26% Similarity=0.258 Sum_probs=109.4
Q ss_pred CcEEeCCCCcccccCchhhhhcCCCCcEEEcCCCcccccCCCCccCCCcCceEeccCCcccccCCccccccccCcccCCC
Q 042537 504 LILMDLGKNGLSGEIPTWIGEGLPKLVVLSLKSNKFHGNIPFQVCQLSYIQILDLSLNNISGIIPKCLNNFTGMAQKSSS 583 (789)
Q Consensus 504 L~~L~ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~ 583 (789)
.+.+++++|+++ .+|..+ .++|++|++++|++++..+..+..+++|++|++++|++++..+..|..+++|
T Consensus 9 ~~~l~~~~~~l~-~~p~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L------ 78 (177)
T 2o6r_A 9 GTEIRCNSKGLT-SVPTGI---PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKL------ 78 (177)
T ss_dssp TTEEECCSSCCS-SCCTTC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTC------
T ss_pred CCEEEecCCCCc-cCCCCC---CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCcc------
Confidence 467788888887 777554 3688888888888887666677888999999999998887666666655555
Q ss_pred ccccccCcccccccccccccccceeEEEeeccccccccccCceeEEEcccCccccccchhhhccccCcEEEccCCcceee
Q 042537 584 NLAITSNYTFERQGIEFLESYVDNVVLTWKGSQHEYRSTLGLVKILDFSMNKLSGTIPEEIMDLVGLVALNLSRNNLTGQ 663 (789)
Q Consensus 584 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 663 (789)
+.|++++|++++..+..|..+++|++|++++|++++.
T Consensus 79 -------------------------------------------~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~ 115 (177)
T 2o6r_A 79 -------------------------------------------TILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSV 115 (177)
T ss_dssp -------------------------------------------CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred -------------------------------------------CEEECCCCCccccCHHHhhCCcccCEEECcCCcceEe
Confidence 8899999999977777789999999999999999976
Q ss_pred cCcccccCCCCCEEeCCCCcccccCc
Q 042537 664 ITPKIDQLKSLDFLDLSQNQFVGGIP 689 (789)
Q Consensus 664 ~p~~~~~l~~L~~L~Ls~N~l~~~~p 689 (789)
.+..+..+++|+.|++++|++.+..|
T Consensus 116 ~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 116 PDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp CTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CHHHhcCCcccCEEEecCCCeeccCc
Confidence 66667889999999999999997665
No 131
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.57 E-value=6.2e-14 Score=149.59 Aligned_cols=220 Identities=11% Similarity=0.063 Sum_probs=164.2
Q ss_pred CCCCEEEcCCCccccCCCcccccCCCCcEEEcCCCcCcccCCccccccCcccEEEccCCeeeeeCCcCccCCCCCcEEeC
Q 042537 430 HKLEFLDLSNNILSGRLPDCWMQFDRLAVLSLANNFFSGKIPKSMGFLHSIQTLSLYNNSLIGELPSFFKSCSQLILMDL 509 (789)
Q Consensus 430 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 509 (789)
.+|+.+.+.. .++.+...+|.+|++|+.+++.+|+++.+...+|. ..+|+.+.+..+ +..+...+|.+|++|+.+++
T Consensus 157 ~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l 233 (401)
T 4fdw_A 157 STVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEI 233 (401)
T ss_dssp CCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEEC
T ss_pred CCceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEec
Confidence 4688888876 56666777888888888888888888877777776 578888888855 67677788888888888888
Q ss_pred CCCcccccCchhhhhcCCCCcEEEcCCCcccccCCCCccCCCcCceEeccCCccc-----ccCCccccccccCcccCCCc
Q 042537 510 GKNGLSGEIPTWIGEGLPKLVVLSLKSNKFHGNIPFQVCQLSYIQILDLSLNNIS-----GIIPKCLNNFTGMAQKSSSN 584 (789)
Q Consensus 510 s~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-----~~~p~~~~~l~~L~~l~~~~ 584 (789)
..+ ++ .++...|.+ .+|+.+.+ .+.++.+...+|.++++|+.+++.+|.+. .+.+.+|.++++|
T Consensus 234 ~~~-l~-~I~~~aF~~-~~L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L------- 302 (401)
T 4fdw_A 234 PEN-VS-TIGQEAFRE-SGITTVKL-PNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKL------- 302 (401)
T ss_dssp CTT-CC-EECTTTTTT-CCCSEEEE-ETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTC-------
T ss_pred CCC-cc-Ccccccccc-CCccEEEe-CCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccC-------
Confidence 875 55 677777755 78888888 45566666778888888888888877664 3444555555554
Q ss_pred cccccCcccccccccccccccceeEEEeeccccccccccCceeEEEcccCccccccchhhhccccCcEEEccCCcceeec
Q 042537 585 LAITSNYTFERQGIEFLESYVDNVVLTWKGSQHEYRSTLGLVKILDFSMNKLSGTIPEEIMDLVGLVALNLSRNNLTGQI 664 (789)
Q Consensus 585 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~ 664 (789)
+.+++. +.++.+-...|.++++|+.++|..| ++...
T Consensus 303 ------------------------------------------~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~ 338 (401)
T 4fdw_A 303 ------------------------------------------ARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQIN 338 (401)
T ss_dssp ------------------------------------------CEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEEC
T ss_pred ------------------------------------------CeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEEc
Confidence 677777 4466566677888888888888554 66566
Q ss_pred CcccccCCCCCEEeCCCCcccccCchhhhcCC-CCCeEeccCCcc
Q 042537 665 TPKIDQLKSLDFLDLSQNQFVGGIPSSLCQLS-RLSVMNLSYNNL 708 (789)
Q Consensus 665 p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~-~L~~L~ls~N~l 708 (789)
+.+|.++ +|+.+++++|.+....+..|..++ .++.+++..+.+
T Consensus 339 ~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~ 382 (401)
T 4fdw_A 339 FSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESV 382 (401)
T ss_dssp TTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGH
T ss_pred HHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHH
Confidence 7778888 888888888888777777777774 677777776654
No 132
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.57 E-value=4.7e-15 Score=138.54 Aligned_cols=132 Identities=21% Similarity=0.162 Sum_probs=106.4
Q ss_pred CCCCEEEcCCCccc-cCCCcccccCCCCcEEEcCCCcCcccCCccccccCcccEEEccCCeeeeeCCcCccCCCCCcEEe
Q 042537 430 HKLEFLDLSNNILS-GRLPDCWMQFDRLAVLSLANNFFSGKIPKSMGFLHSIQTLSLYNNSLIGELPSFFKSCSQLILMD 508 (789)
Q Consensus 430 ~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 508 (789)
++|+.|++++|.++ +.+|..+..+++|+.|++++|.+++. ..+..+++|++|++++|.+++.+|..+..+++|++|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 67888888888887 56777788888888888888888865 6788888888999998888877777777788899999
Q ss_pred CCCCcccccCc--hhhhhcCCCCcEEEcCCCcccccCC---CCccCCCcCceEeccCCcccc
Q 042537 509 LGKNGLSGEIP--TWIGEGLPKLVVLSLKSNKFHGNIP---FQVCQLSYIQILDLSLNNISG 565 (789)
Q Consensus 509 ls~n~l~~~~p--~~~~~~l~~L~~L~L~~n~l~~~~~---~~~~~l~~L~~L~Ls~N~l~~ 565 (789)
+++|.++ .+| ..+. .+++|+.|++++|++++..+ ..+..+++|++|++++|.+..
T Consensus 102 Ls~N~l~-~~~~~~~l~-~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~ 161 (168)
T 2ell_A 102 LSGNKLK-DISTLEPLK-KLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQE 161 (168)
T ss_dssp CBSSSCC-SSGGGGGGS-SCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCB
T ss_pred ccCCccC-cchhHHHHh-cCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhh
Confidence 9999888 554 3443 68889999999998885544 367888899999999888764
No 133
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.56 E-value=4.4e-15 Score=135.65 Aligned_cols=128 Identities=21% Similarity=0.217 Sum_probs=85.9
Q ss_pred CCCcEEeCCCCccc-ccCchhhhhcCCCCcEEEcCCCcccccCCCCccCCCcCceEeccCCcccccCCccccccccCccc
Q 042537 502 SQLILMDLGKNGLS-GEIPTWIGEGLPKLVVLSLKSNKFHGNIPFQVCQLSYIQILDLSLNNISGIIPKCLNNFTGMAQK 580 (789)
Q Consensus 502 ~~L~~L~ls~n~l~-~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l 580 (789)
++|+.|++++|.++ +.+|..+. .+++|++|++++|++++. ..+..+++|++|++++|.+++.+|..+..+++|
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~-~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L--- 90 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTD-EFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNL--- 90 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCT-TCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTC---
T ss_pred ccCeEEEccCCcCChhHHHHHHh-hcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCC---
Confidence 44555555555554 44554333 456666666666666544 456667777777777777776555555444444
Q ss_pred CCCccccccCcccccccccccccccceeEEEeeccccccccccCceeEEEcccCccccc-cchhhhccccCcEEEccCCc
Q 042537 581 SSSNLAITSNYTFERQGIEFLESYVDNVVLTWKGSQHEYRSTLGLVKILDFSMNKLSGT-IPEEIMDLVGLVALNLSRNN 659 (789)
Q Consensus 581 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L~Ls~N~ 659 (789)
+.|++++|++++. .+..++.+++|++|++++|+
T Consensus 91 ----------------------------------------------~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~ 124 (149)
T 2je0_A 91 ----------------------------------------------THLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCE 124 (149)
T ss_dssp ----------------------------------------------CEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCG
T ss_pred ----------------------------------------------CEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCc
Confidence 7788888888753 34778888888888888888
Q ss_pred ceeecC---cccccCCCCCEEeCCC
Q 042537 660 LTGQIT---PKIDQLKSLDFLDLSQ 681 (789)
Q Consensus 660 l~~~~p---~~~~~l~~L~~L~Ls~ 681 (789)
+++..+ ..+..+++|+.||+++
T Consensus 125 l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 125 VTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp GGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred ccchHHHHHHHHHHCCCcccccCCC
Confidence 886555 4688888888888864
No 134
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.53 E-value=5.7e-13 Score=143.04 Aligned_cols=310 Identities=10% Similarity=0.052 Sum_probs=151.8
Q ss_pred CcccCchhhhcCCCCcEEECCCCCccEEecCCCcCcccchhhhhCCCCCCEEEccCCCCCCccChhhhhcCCCCcEEEcc
Q 042537 215 LQGSLLEPFDRMVSLRTLYLGFNELEELFLGKNRLNGTINQWLSRMYKLDALSLSGNSLTGVVTESVFSELSNLKALHLD 294 (789)
Q Consensus 215 i~~~~~~~~~~l~~L~~L~L~~n~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~ 294 (789)
++.+...+|.++.+|+.+.+. +.++.....+|.++++|+.+++..+ ++ .++...|.++++|+.+.+.
T Consensus 59 VtsIg~~AF~~c~~L~~i~lp-----------~~i~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~c~~L~~i~~p 125 (394)
T 4fs7_A 59 VVSIGYAAFQGCRKVTEIKIP-----------STVREIGEFAFENCSKLEIINIPDS-VK-MIGRCTFSGCYALKSILLP 125 (394)
T ss_dssp EEEECTTTTTTCTTEEEEECC-----------TTCCEECTTTTTTCTTCCEECCCTT-CC-EECTTTTTTCTTCCCCCCC
T ss_pred EeEhHHHHhhCCCCceEEEeC-----------CCccCcchhHhhCCCCCcEEEeCCC-ce-Eccchhhcccccchhhccc
Confidence 444555667777777777774 2233334456777777777777654 44 5666667777777776665
Q ss_pred CCcccccccCCCCCcccceeEeccCccCCCCCchhccCCCCccEEEccCCcCCCCcchhHhhhccCCCeeeecccccccc
Q 042537 295 DNSFTLKFSHDWIPPFQLIIILLGSCQMGPHFPKWLQTQNQIEVLDISDAGISDTVPDWFWDLSHTIADFNLSNNHIKGK 374 (789)
Q Consensus 295 ~n~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 374 (789)
.+ +.......|.....+........ ......+|..+++|+.+.+.++. .......| ..+.+|+.+.+..+ ++ .
T Consensus 126 ~~-l~~i~~~aF~~~~~~~~~~~~~~--~~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F-~~c~~L~~i~l~~~-~~-~ 198 (394)
T 4fs7_A 126 LM-LKSIGVEAFKGCDFKEITIPEGV--TVIGDEAFATCESLEYVSLPDSM-ETLHNGLF-SGCGKLKSIKLPRN-LK-I 198 (394)
T ss_dssp TT-CCEECTTTTTTCCCSEEECCTTC--CEECTTTTTTCTTCCEEECCTTC-CEECTTTT-TTCTTCCBCCCCTT-CC-E
T ss_pred Cc-eeeecceeeecccccccccCccc--cccchhhhcccCCCcEEecCCcc-ceeccccc-cCCCCceEEEcCCC-ce-E
Confidence 43 33333444444433222222211 11223456777778777776543 22222233 22345666666554 22 3
Q ss_pred CCCCCCCCCCCCCEEEccCCcccccCCCCCCCCcEEEcCCCcCccccchhcccCCCCCCEEEcCCCccccCCCcccccCC
Q 042537 375 LPNLSLRFDPFSSSIDISSNYFEGLIPPLPSNASVLNLSRNKFSESISFLCSINGHKLEFLDLSNNILSGRLPDCWMQFD 454 (789)
Q Consensus 375 ~p~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~ 454 (789)
++...+..+..|+.+.+..+...- ...++.. .+|+.+.+... ++.....+|..+.
T Consensus 199 I~~~~F~~~~~L~~i~~~~~~~~i-----------------------~~~~~~~-~~l~~i~ip~~-~~~i~~~~f~~~~ 253 (394)
T 4fs7_A 199 IRDYCFAECILLENMEFPNSLYYL-----------------------GDFALSK-TGVKNIIIPDS-FTELGKSVFYGCT 253 (394)
T ss_dssp ECTTTTTTCTTCCBCCCCTTCCEE-----------------------CTTTTTT-CCCCEEEECTT-CCEECSSTTTTCS
T ss_pred eCchhhccccccceeecCCCceEe-----------------------ehhhccc-CCCceEEECCC-ceecccccccccc
Confidence 333345555555544443322110 0001111 44555555432 2223344555555
Q ss_pred CCcEEEcCCCcCcccCCccccccCcccEEEccCCeeeeeCCcCccCCCCCcEEeCCCCcccccCchhhhhcCCCCcEEEc
Q 042537 455 RLAVLSLANNFFSGKIPKSMGFLHSIQTLSLYNNSLIGELPSFFKSCSQLILMDLGKNGLSGEIPTWIGEGLPKLVVLSL 534 (789)
Q Consensus 455 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~l~~L~~L~L 534 (789)
.++.+.+..+... .....|..+..++.+....+.+ ....|..+.+|+.+.+.++ ++ .++...|.++.+|+.+++
T Consensus 254 ~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i---~~~~F~~~~~L~~i~l~~~-i~-~I~~~aF~~c~~L~~i~l 327 (394)
T 4fs7_A 254 DLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIV---PEKTFYGCSSLTEVKLLDS-VK-FIGEEAFESCTSLVSIDL 327 (394)
T ss_dssp SCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEE---CTTTTTTCTTCCEEEECTT-CC-EECTTTTTTCTTCCEECC
T ss_pred cceeEEcCCCcce-eeccccccccccceeccCceee---ccccccccccccccccccc-cc-eechhhhcCCCCCCEEEe
Confidence 6666665554333 4444555555555555544432 2334555555655555443 33 444444445555555555
Q ss_pred CCCcccccCCCCccCCCcCceEeccCCcccccCCccccccccC
Q 042537 535 KSNKFHGNIPFQVCQLSYIQILDLSLNNISGIIPKCLNNFTGM 577 (789)
Q Consensus 535 ~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L 577 (789)
..+ ++.+...+|.++.+|+.+++..+ ++.+...+|.++.+|
T Consensus 328 p~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L 368 (394)
T 4fs7_A 328 PYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINL 368 (394)
T ss_dssp CTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTC
T ss_pred CCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCC
Confidence 432 44344445555555555555443 333333444444333
No 135
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.52 E-value=3.3e-13 Score=143.99 Aligned_cols=219 Identities=10% Similarity=0.024 Sum_probs=152.5
Q ss_pred CCCCEEEcCCCccccCCCcccccCCCCcEEEcCCCcCcccCCccccccCcccEEEccCCeeeeeCCcCccCCCCCcEEeC
Q 042537 430 HKLEFLDLSNNILSGRLPDCWMQFDRLAVLSLANNFFSGKIPKSMGFLHSIQTLSLYNNSLIGELPSFFKSCSQLILMDL 509 (789)
Q Consensus 430 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 509 (789)
.+|+.+.+..+ ++.+...+|.++ +|+.+.+.. .++.+.+.+|.++++|+.+++.+|.++.+....|. +.+|+.+.+
T Consensus 135 ~~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~l 210 (401)
T 4fdw_A 135 SQIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLL 210 (401)
T ss_dssp CCCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEEC
T ss_pred CCccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEe
Confidence 35677776655 554555666664 577777764 55556666777777777777777777766666665 467777777
Q ss_pred CCCcccccCchhhhhcCCCCcEEEcCCCcccccCCCCccCCCcCceEeccCCcccccCCccccccccCcccCCCcccccc
Q 042537 510 GKNGLSGEIPTWIGEGLPKLVVLSLKSNKFHGNIPFQVCQLSYIQILDLSLNNISGIIPKCLNNFTGMAQKSSSNLAITS 589 (789)
Q Consensus 510 s~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~ 589 (789)
..+ ++ .++...|.++++|+.+++..+ ++.+...+|.+ .+|+.+.+ .+.++.+...+|.++++|
T Consensus 211 p~~-l~-~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~l-p~~i~~I~~~aF~~c~~L------------ 273 (401)
T 4fdw_A 211 PVT-LK-EIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKL-PNGVTNIASRAFYYCPEL------------ 273 (401)
T ss_dssp CTT-CC-EECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEE-ETTCCEECTTTTTTCTTC------------
T ss_pred CCc-hh-eehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEe-CCCccEEChhHhhCCCCC------------
Confidence 643 55 666666666777777777664 44455555655 66777777 344555555566555555
Q ss_pred CcccccccccccccccceeEEEeeccccccccccCceeEEEcccCccc-----cccchhhhccccCcEEEccCCcceeec
Q 042537 590 NYTFERQGIEFLESYVDNVVLTWKGSQHEYRSTLGLVKILDFSMNKLS-----GTIPEEIMDLVGLVALNLSRNNLTGQI 664 (789)
Q Consensus 590 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-----~~~p~~~~~l~~L~~L~Ls~N~l~~~~ 664 (789)
+.+++.+|.+. ...+..|.++++|+.++|. +.++...
T Consensus 274 -------------------------------------~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~ 315 (401)
T 4fdw_A 274 -------------------------------------AEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILG 315 (401)
T ss_dssp -------------------------------------CEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEEC
T ss_pred -------------------------------------CEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEh
Confidence 77888777664 4566788899999999998 4577677
Q ss_pred CcccccCCCCCEEeCCCCcccccCchhhhcCCCCCeEeccCCccc
Q 042537 665 TPKIDQLKSLDFLDLSQNQFVGGIPSSLCQLSRLSVMNLSYNNLS 709 (789)
Q Consensus 665 p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~ 709 (789)
..+|.++++|+.++|..| ++.+.+.+|.++ +|+.+++++|.+.
T Consensus 316 ~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~ 358 (401)
T 4fdw_A 316 QGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPP 358 (401)
T ss_dssp TTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCC
T ss_pred hhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCc
Confidence 788899999999999655 776777889888 8999999988654
No 136
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.51 E-value=7.2e-16 Score=148.36 Aligned_cols=135 Identities=22% Similarity=0.246 Sum_probs=101.9
Q ss_pred CchhhhhcCCCCcEEEcCCCcccccCCCCccCCCcCceEeccCCcccccCCccccccccCcccCCCccccccCccccccc
Q 042537 518 IPTWIGEGLPKLVVLSLKSNKFHGNIPFQVCQLSYIQILDLSLNNISGIIPKCLNNFTGMAQKSSSNLAITSNYTFERQG 597 (789)
Q Consensus 518 ~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~ 597 (789)
+|..+. .+++|++|++++|++++ +| .+..+++|++|++++|.++ .+|..+..+++|
T Consensus 40 l~~~~~-~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L-------------------- 95 (198)
T 1ds9_A 40 MDATLS-TLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTL-------------------- 95 (198)
T ss_dssp CHHHHH-HTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHC--------------------
T ss_pred hhHHHh-cCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcC--------------------
Confidence 333555 68888888888888875 55 7778888888888888887 345444444444
Q ss_pred ccccccccceeEEEeeccccccccccCceeEEEcccCccccccchhhhccccCcEEEccCCcceeecC-cccccCCCCCE
Q 042537 598 IEFLESYVDNVVLTWKGSQHEYRSTLGLVKILDFSMNKLSGTIPEEIMDLVGLVALNLSRNNLTGQIT-PKIDQLKSLDF 676 (789)
Q Consensus 598 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~ 676 (789)
+.|++++|++++ +| .+..+++|++|++++|++++..+ ..+..+++|+.
T Consensus 96 -----------------------------~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~ 144 (198)
T 1ds9_A 96 -----------------------------EELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLED 144 (198)
T ss_dssp -----------------------------SEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSE
T ss_pred -----------------------------CEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCE
Confidence 888999998885 45 68888999999999999885332 46888899999
Q ss_pred EeCCCCcccccCchh----------hhcCCCCCeEeccCCccc
Q 042537 677 LDLSQNQFVGGIPSS----------LCQLSRLSVMNLSYNNLS 709 (789)
Q Consensus 677 L~Ls~N~l~~~~p~~----------l~~l~~L~~L~ls~N~l~ 709 (789)
|++++|++.+.+|.. +..+++|++|| +|+++
T Consensus 145 L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 145 LLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp EEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred EEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence 999999988776653 78889999887 66664
No 137
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.51 E-value=3.4e-14 Score=133.69 Aligned_cols=81 Identities=21% Similarity=0.266 Sum_probs=56.7
Q ss_pred eEEEcccCccccccchhhhccccCcEEEccCCcceeecCc--ccccCCCCCEEeCCCCcccccCch----hhhcCCCCCe
Q 042537 627 KILDFSMNKLSGTIPEEIMDLVGLVALNLSRNNLTGQITP--KIDQLKSLDFLDLSQNQFVGGIPS----SLCQLSRLSV 700 (789)
Q Consensus 627 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~--~~~~l~~L~~L~Ls~N~l~~~~p~----~l~~l~~L~~ 700 (789)
+.|++++|++++..+..|..+++|++|+|++|+++ .+|. .+..+++|+.|++++|.++. +|. .+..+++|++
T Consensus 67 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~~-~~~~~~~~~~~l~~L~~ 144 (176)
T 1a9n_A 67 KTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRV 144 (176)
T ss_dssp CEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCSE
T ss_pred CEEECCCCcccccCcchhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCCC-cHhHHHHHHHHCCccce
Confidence 56666666666444444577777777777777775 4554 67777888888888888774 444 3778888888
Q ss_pred EeccCCccc
Q 042537 701 MNLSYNNLS 709 (789)
Q Consensus 701 L~ls~N~l~ 709 (789)
||+++|...
T Consensus 145 Ld~~~n~~~ 153 (176)
T 1a9n_A 145 LDFQKVKLK 153 (176)
T ss_dssp ETTEECCHH
T ss_pred eCCCcCCHH
Confidence 888888764
No 138
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.51 E-value=3.8e-14 Score=133.37 Aligned_cols=135 Identities=17% Similarity=0.179 Sum_probs=104.7
Q ss_pred CccCCCCCcEEeCCCCcccccCchhhhhcCCCCcEEEcCCCcccccCCCCccCCCcCceEeccCCcccccCCcccccccc
Q 042537 497 FFKSCSQLILMDLGKNGLSGEIPTWIGEGLPKLVVLSLKSNKFHGNIPFQVCQLSYIQILDLSLNNISGIIPKCLNNFTG 576 (789)
Q Consensus 497 ~~~~l~~L~~L~ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 576 (789)
.+..+.+|++|++++|+++ .+|. +....++|+.|++++|.+++. ..+..+++|++|++++|.+++..+..+..+++
T Consensus 14 ~~~~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 89 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPD 89 (176)
T ss_dssp EEECTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTT
T ss_pred hcCCcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCC
Confidence 3556777888888888877 5654 332345888888888888865 57788888999999999888765555555555
Q ss_pred CcccCCCccccccCcccccccccccccccceeEEEeeccccccccccCceeEEEcccCccccccch--hhhccccCcEEE
Q 042537 577 MAQKSSSNLAITSNYTFERQGIEFLESYVDNVVLTWKGSQHEYRSTLGLVKILDFSMNKLSGTIPE--EIMDLVGLVALN 654 (789)
Q Consensus 577 L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~--~~~~l~~L~~L~ 654 (789)
| +.|++++|+++ .+|. .+..+++|+.|+
T Consensus 90 L-------------------------------------------------~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~ 119 (176)
T 1a9n_A 90 L-------------------------------------------------TELILTNNSLV-ELGDLDPLASLKSLTYLC 119 (176)
T ss_dssp C-------------------------------------------------CEEECCSCCCC-CGGGGGGGGGCTTCCEEE
T ss_pred C-------------------------------------------------CEEECCCCcCC-cchhhHhhhcCCCCCEEE
Confidence 5 88999999986 5665 788999999999
Q ss_pred ccCCcceeecCcc----cccCCCCCEEeCCCCcccc
Q 042537 655 LSRNNLTGQITPK----IDQLKSLDFLDLSQNQFVG 686 (789)
Q Consensus 655 Ls~N~l~~~~p~~----~~~l~~L~~L~Ls~N~l~~ 686 (789)
+++|+++ .+|.. +..+++|+.||+++|.+..
T Consensus 120 l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 120 ILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLKE 154 (176)
T ss_dssp CCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred ecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHHH
Confidence 9999998 55664 8899999999999998864
No 139
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.47 E-value=1.3e-13 Score=128.56 Aligned_cols=89 Identities=24% Similarity=0.204 Sum_probs=80.4
Q ss_pred eeEEEcccCccccccchhhhccccCcEEEccCCcceeecCcccccCCCCCEEeCCCCcccccCchhhhcCCCCCeEeccC
Q 042537 626 VKILDFSMNKLSGTIPEEIMDLVGLVALNLSRNNLTGQITPKIDQLKSLDFLDLSQNQFVGGIPSSLCQLSRLSVMNLSY 705 (789)
Q Consensus 626 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~ 705 (789)
++.|+|++|+|++..|..|..+++|++|+|++|+|++..+..|..+++|+.|+|++|+|++..+..|..+++|++|++++
T Consensus 32 l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 111 (170)
T 3g39_A 32 TQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLN 111 (170)
T ss_dssp CSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCC
Confidence 48899999999988888899999999999999999977777789999999999999999988888899999999999999
Q ss_pred CcccccCCC
Q 042537 706 NNLSGKIPL 714 (789)
Q Consensus 706 N~l~~~~p~ 714 (789)
|++.+.++.
T Consensus 112 N~~~c~c~~ 120 (170)
T 3g39_A 112 NPWDCACSD 120 (170)
T ss_dssp SCBCTTBGG
T ss_pred CCCCCCchh
Confidence 999988774
No 140
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.46 E-value=1.7e-12 Score=139.39 Aligned_cols=63 Identities=11% Similarity=0.133 Sum_probs=43.2
Q ss_pred CcccchhhhhCCCCCCEEEccCCCCCCccChhhhhcCCCCcEEEccCCcccccccCCCCCccccee
Q 042537 249 LNGTINQWLSRMYKLDALSLSGNSLTGVVTESVFSELSNLKALHLDDNSFTLKFSHDWIPPFQLII 314 (789)
Q Consensus 249 l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~ 314 (789)
++.....+|.++.+|+.+.+..+ ++ .++..+|.++++|+.+++..+ ++......|..+..|+.
T Consensus 59 VtsIg~~AF~~c~~L~~i~lp~~-i~-~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~ 121 (394)
T 4fs7_A 59 VVSIGYAAFQGCRKVTEIKIPST-VR-EIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKS 121 (394)
T ss_dssp EEEECTTTTTTCTTEEEEECCTT-CC-EECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCC
T ss_pred EeEhHHHHhhCCCCceEEEeCCC-cc-CcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchh
Confidence 34445567888999999999754 65 677778999999999998754 44444444444444443
No 141
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.44 E-value=2.5e-15 Score=144.59 Aligned_cols=152 Identities=21% Similarity=0.258 Sum_probs=98.8
Q ss_pred CcccEEEccCCeeeeeCCc------CccCCCCCcEEeCCCCcccccCchhhhhcCCCCcEEEcCCCcccccCCCCccCCC
Q 042537 478 HSIQTLSLYNNSLIGELPS------FFKSCSQLILMDLGKNGLSGEIPTWIGEGLPKLVVLSLKSNKFHGNIPFQVCQLS 551 (789)
Q Consensus 478 ~~L~~L~L~~n~l~~~~~~------~~~~l~~L~~L~ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 551 (789)
..++.++++.+.+.+..|. .+..+++|++|++++|.++ .+| .+. .+++|++|++++|+++ .+|..+..++
T Consensus 18 ~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~-~l~-~~~-~l~~L~~L~l~~n~l~-~l~~~~~~~~ 93 (198)
T 1ds9_A 18 KSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIE-KIS-SLS-GMENLRILSLGRNLIK-KIENLDAVAD 93 (198)
T ss_dssp TCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEES-CCC-CHH-HHTTCCEEEEEEEEEC-SCSSHHHHHH
T ss_pred ccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCc-ccc-ccc-cCCCCCEEECCCCCcc-cccchhhcCC
Confidence 3444444444444444443 5556666666666666666 355 333 5667777777777766 4555555667
Q ss_pred cCceEeccCCcccccCCccccccccCcccCCCccccccCcccccccccccccccceeEEEeeccccccccccCceeEEEc
Q 042537 552 YIQILDLSLNNISGIIPKCLNNFTGMAQKSSSNLAITSNYTFERQGIEFLESYVDNVVLTWKGSQHEYRSTLGLVKILDF 631 (789)
Q Consensus 552 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L 631 (789)
+|++|++++|++++. | .+..+++| +.|++
T Consensus 94 ~L~~L~L~~N~l~~l-~-~~~~l~~L-------------------------------------------------~~L~l 122 (198)
T 1ds9_A 94 TLEELWISYNQIASL-S-GIEKLVNL-------------------------------------------------RVLYM 122 (198)
T ss_dssp HCSEEEEEEEECCCH-H-HHHHHHHS-------------------------------------------------SEEEE
T ss_pred cCCEEECcCCcCCcC-C-ccccCCCC-------------------------------------------------CEEEC
Confidence 777777777777653 2 34444433 78888
Q ss_pred ccCccccccc-hhhhccccCcEEEccCCcceeecCcc----------cccCCCCCEEeCCCCcccc
Q 042537 632 SMNKLSGTIP-EEIMDLVGLVALNLSRNNLTGQITPK----------IDQLKSLDFLDLSQNQFVG 686 (789)
Q Consensus 632 s~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~~----------~~~l~~L~~L~Ls~N~l~~ 686 (789)
++|++++..+ ..+..+++|++|++++|++++.+|.. +..+++|+.|| +|.++.
T Consensus 123 ~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~~ 186 (198)
T 1ds9_A 123 SNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVDV 186 (198)
T ss_dssp SEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGTT
T ss_pred CCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccCH
Confidence 8888874332 46888888999999999988766553 78889999887 777664
No 142
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.43 E-value=3.8e-13 Score=125.80 Aligned_cols=89 Identities=25% Similarity=0.218 Sum_probs=77.4
Q ss_pred eeEEEcccCccccccchhhhccccCcEEEccCCcceeecCcccccCCCCCEEeCCCCcccccCchhhhcCCCCCeEeccC
Q 042537 626 VKILDFSMNKLSGTIPEEIMDLVGLVALNLSRNNLTGQITPKIDQLKSLDFLDLSQNQFVGGIPSSLCQLSRLSVMNLSY 705 (789)
Q Consensus 626 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~ 705 (789)
|+.|+|++|+|++..|..|.++++|++|+|++|+|++..+..|..+++|+.|+|++|+|++..+..|..+++|++|++++
T Consensus 35 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~ 114 (174)
T 2r9u_A 35 KQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYN 114 (174)
T ss_dssp CSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCS
T ss_pred CcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEeCC
Confidence 48889999999888888899999999999999999976666678999999999999999977777799999999999999
Q ss_pred CcccccCCC
Q 042537 706 NNLSGKIPL 714 (789)
Q Consensus 706 N~l~~~~p~ 714 (789)
|++.+.++.
T Consensus 115 N~~~c~~~~ 123 (174)
T 2r9u_A 115 NPWDCECRD 123 (174)
T ss_dssp SCBCTTBGG
T ss_pred CCccccccc
Confidence 999877653
No 143
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.37 E-value=1.8e-12 Score=120.72 Aligned_cols=63 Identities=27% Similarity=0.250 Sum_probs=49.6
Q ss_pred eEEEcccCccccccchhhhccccCcEEEccCCcceeecCcccccCCCCCEEeCCCCcccccCc
Q 042537 627 KILDFSMNKLSGTIPEEIMDLVGLVALNLSRNNLTGQITPKIDQLKSLDFLDLSQNQFVGGIP 689 (789)
Q Consensus 627 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p 689 (789)
+.|+|++|+|++..+..|..+++|++|+|++|+|++..+..|..+++|+.|+|++|.++...+
T Consensus 57 ~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~ 119 (170)
T 3g39_A 57 TRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACS 119 (170)
T ss_dssp SEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred CEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence 667777777776666667888888889999998887666678888999999999998886543
No 144
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.32 E-value=6.7e-14 Score=147.87 Aligned_cols=84 Identities=19% Similarity=0.166 Sum_probs=46.8
Q ss_pred eeEEEcccCccccc----cchhhhccccCcEEEccCCcceee----cCcccccCCCCCEEeCCCCcccccCchhhhcCCC
Q 042537 626 VKILDFSMNKLSGT----IPEEIMDLVGLVALNLSRNNLTGQ----ITPKIDQLKSLDFLDLSQNQFVGGIPSSLCQLSR 697 (789)
Q Consensus 626 L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~ 697 (789)
|++|||++|.|++. ++..+...++|++|+|++|.|++. ++..+...++|++|||++|.|+......+..+..
T Consensus 185 L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~ 264 (372)
T 3un9_A 185 VTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGG 264 (372)
T ss_dssp CCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC-
T ss_pred cCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhc
Confidence 46666666666542 244555666777777777777643 2333445577777777777776555555544321
Q ss_pred -----CCeEe--ccCCccc
Q 042537 698 -----LSVMN--LSYNNLS 709 (789)
Q Consensus 698 -----L~~L~--ls~N~l~ 709 (789)
|+.+. +..|.++
T Consensus 265 ~~~~~L~~l~~ll~~~~~~ 283 (372)
T 3un9_A 265 AAEGGARVVVSLTEGTAVS 283 (372)
T ss_dssp -----CEEECCCC----CH
T ss_pred CCCccchhhHhhhcCCccC
Confidence 45555 4555443
No 145
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.32 E-value=9.8e-11 Score=125.55 Aligned_cols=86 Identities=12% Similarity=0.079 Sum_probs=35.4
Q ss_pred hhhhCCCCCCEEEccCCC---CCCccChhhhhcCCCCcEEEccCCcccccccCCCCCcccceeEeccCccCCCCCchhcc
Q 042537 255 QWLSRMYKLDALSLSGNS---LTGVVTESVFSELSNLKALHLDDNSFTLKFSHDWIPPFQLIIILLGSCQMGPHFPKWLQ 331 (789)
Q Consensus 255 ~~l~~l~~L~~L~L~~n~---l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~ 331 (789)
.+|.++++|+.+.+..|. ++ .+....|..+.+|+.+.+..+ ++......|..+.+|+.+.+... +.......|.
T Consensus 81 ~AF~~C~~L~~i~~~~n~p~~l~-~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~i~lp~~-~~~I~~~~F~ 157 (394)
T 4gt6_A 81 NAFYNCTSLKRVTIQDNKPSCVK-KIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDTVTIPEG-VTSVADGMFS 157 (394)
T ss_dssp TTTTTCTTCCEEEEGGGCCCCCC-EECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCEEECCTT-CCEECTTTTT
T ss_pred HHhhCCccCceEeecCCCCCeee-EechhhchhcccceeeccCCc-cceehhhhhhhhcccccccccce-eeeeccccee
Confidence 344444444444444332 22 333334444444444444332 22223333333334444433221 1112233455
Q ss_pred CCCCccEEEccC
Q 042537 332 TQNQIEVLDISD 343 (789)
Q Consensus 332 ~l~~L~~L~ls~ 343 (789)
.+..|+.+.+..
T Consensus 158 ~c~~L~~i~~~~ 169 (394)
T 4gt6_A 158 YCYSLHTVTLPD 169 (394)
T ss_dssp TCTTCCEEECCT
T ss_pred cccccccccccc
Confidence 566666666544
No 146
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.32 E-value=7.1e-12 Score=117.11 Aligned_cols=104 Identities=22% Similarity=0.233 Sum_probs=59.8
Q ss_pred cEEEcCCCcCcccCCccccccCcccEEEccCCeeeeeCCcCccCCCCCcEEeCCCCcccccCchhhhhcCCCCcEEEcCC
Q 042537 457 AVLSLANNFFSGKIPKSMGFLHSIQTLSLYNNSLIGELPSFFKSCSQLILMDLGKNGLSGEIPTWIGEGLPKLVVLSLKS 536 (789)
Q Consensus 457 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~l~~L~~L~L~~ 536 (789)
+.+++++|.++ .+|..+. ++|++|++++|++++..|..|.++++|++|++++|+++ .+|...+..+++|++|+|++
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLT-AIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCC-ccChhHhCCcchhhEEECCC
Confidence 34455555554 3333332 45555666666655555555666666666666666665 45554444566666666666
Q ss_pred CcccccCCCCccCCCcCceEeccCCccc
Q 042537 537 NKFHGNIPFQVCQLSYIQILDLSLNNIS 564 (789)
Q Consensus 537 n~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 564 (789)
|++++..+..+..+++|++|++++|++.
T Consensus 91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 91 NHLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp SCCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred CccceeCHHHhccccCCCEEEeCCCCcc
Confidence 6666544445666666777777777665
No 147
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.27 E-value=6e-10 Score=119.38 Aligned_cols=266 Identities=9% Similarity=0.099 Sum_probs=130.7
Q ss_pred cchhhhhCCC-CCCEEEccCCCCCCccChhhhhcCCCCcEEEccCCc---ccccccCCCCCcccceeEeccCccCCCCCc
Q 042537 252 TINQWLSRMY-KLDALSLSGNSLTGVVTESVFSELSNLKALHLDDNS---FTLKFSHDWIPPFQLIIILLGSCQMGPHFP 327 (789)
Q Consensus 252 ~~~~~l~~l~-~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~---i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 327 (789)
....+|.++. .|+.+.+..+ ++ .|...+|.++++|+.+.+..|. ++......|..+.+|+.+.+..+ +.....
T Consensus 54 Ig~~aF~~~~~~L~sI~iP~s-vt-~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~ 130 (394)
T 4gt6_A 54 IGDRVFCNYKYVLTSVQIPDT-VT-EIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDS 130 (394)
T ss_dssp ECTTTTTTCCSCCCEEEECTT-CC-EECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECT
T ss_pred cCHhhccCCCCcCEEEEECCC-ee-EEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehh
Confidence 3345677764 5888888764 55 6777889999999999998764 55455556666666655544332 222223
Q ss_pred hhccCCCCccEEEccCCcCCCCcchhHhhhccCCCeeeeccccccccCCCCCCCCCCCCCEEEccCCcccccCCCCCCCC
Q 042537 328 KWLQTQNQIEVLDISDAGISDTVPDWFWDLSHTIADFNLSNNHIKGKLPNLSLRFDPFSSSIDISSNYFEGLIPPLPSNA 407 (789)
Q Consensus 328 ~~l~~l~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L 407 (789)
..|..+.+|+.+.+..+ +. .++...+..+..|+.+.+..+ ++.
T Consensus 131 ~aF~~c~~L~~i~lp~~-~~--------------------------~I~~~~F~~c~~L~~i~~~~~-~~~--------- 173 (394)
T 4gt6_A 131 EAFHHCEELDTVTIPEG-VT--------------------------SVADGMFSYCYSLHTVTLPDS-VTA--------- 173 (394)
T ss_dssp TTTTTCTTCCEEECCTT-CC--------------------------EECTTTTTTCTTCCEEECCTT-CCE---------
T ss_pred hhhhhhcccccccccce-ee--------------------------eecccceecccccccccccce-eeE---------
Confidence 34455555555554322 11 122223444444444444322 000
Q ss_pred cEEEcCCCcCccccchhcccCCCCCCEEEcCCCccccCCCcccccCCCCcEEEcCCCcCcccCCccc-------------
Q 042537 408 SVLNLSRNKFSESISFLCSINGHKLEFLDLSNNILSGRLPDCWMQFDRLAVLSLANNFFSGKIPKSM------------- 474 (789)
Q Consensus 408 ~~L~l~~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~------------- 474 (789)
+...++.+ ..|+.+.+..+... ....+|.++.+++......+.........+
T Consensus 174 -------------I~~~aF~~-~~l~~i~ip~~~~~-i~~~af~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (394)
T 4gt6_A 174 -------------IEERAFTG-TALTQIHIPAKVTR-IGTNAFSECFALSTITSDSESYPAIDNVLYEKSANGDYALIRY 238 (394)
T ss_dssp -------------ECTTTTTT-CCCSEEEECTTCCE-ECTTTTTTCTTCCEEEECCSSSCBSSSCEEEECTTSCEEEEEC
T ss_pred -------------eccccccc-cceeEEEECCcccc-cccchhhhccccceecccccccccccceeeccccccccccccc
Confidence 11111111 44555555443322 444556666666666555443331111111
Q ss_pred cccCcccEEEccCCeeeeeCCcCccCCCCCcEEeCCCCcccccCchhhhhcCCCCcEEEcCCCcccccCCCCccCCCcCc
Q 042537 475 GFLHSIQTLSLYNNSLIGELPSFFKSCSQLILMDLGKNGLSGEIPTWIGEGLPKLVVLSLKSNKFHGNIPFQVCQLSYIQ 554 (789)
Q Consensus 475 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 554 (789)
.....+..+.+.. .+..+-..+|.+|..|+.+.+.++.. .+....|.++++|+.+.+. +.++.+...+|.++.+|+
T Consensus 239 ~~~~~~~~~~ip~-~v~~i~~~aF~~c~~L~~i~lp~~~~--~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~ 314 (394)
T 4gt6_A 239 PSQREDPAFKIPN-GVARIETHAFDSCAYLASVKMPDSVV--SIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLK 314 (394)
T ss_dssp CTTCCCSEEECCT-TEEEECTTTTTTCSSCCEEECCTTCC--EECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCC
T ss_pred ccccccceEEcCC-cceEcccceeeecccccEEecccccc--eecCcccccccccccccCC-CcccccCceeecCCCCcC
Confidence 1112233333332 23334455666666666666654432 3444444456666666664 334434444555566666
Q ss_pred eEeccCCcccccCCccccccccC
Q 042537 555 ILDLSLNNISGIIPKCLNNFTGM 577 (789)
Q Consensus 555 ~L~Ls~N~l~~~~p~~~~~l~~L 577 (789)
.+++..+ ++.+...+|.++.+|
T Consensus 315 ~i~lp~~-v~~I~~~aF~~C~~L 336 (394)
T 4gt6_A 315 SIDIPEG-ITQILDDAFAGCEQL 336 (394)
T ss_dssp EEECCTT-CCEECTTTTTTCTTC
T ss_pred EEEeCCc-ccEehHhHhhCCCCC
Confidence 6655432 333333344443333
No 148
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.24 E-value=9.5e-13 Score=139.01 Aligned_cols=87 Identities=20% Similarity=0.302 Sum_probs=69.3
Q ss_pred CceeEEEcccCcccc----ccchhhhccccCcEEEccCCcceee----cCcccccCCCCCEEeCCCCccccc----Cchh
Q 042537 624 GLVKILDFSMNKLSG----TIPEEIMDLVGLVALNLSRNNLTGQ----ITPKIDQLKSLDFLDLSQNQFVGG----IPSS 691 (789)
Q Consensus 624 ~~L~~L~Ls~N~l~~----~~p~~~~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~----~p~~ 691 (789)
+.|+.|+|++|.+++ .++..+...++|++|+|++|.|++. ++..+...++|+.|+|++|.|+.. ++..
T Consensus 155 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~ 234 (372)
T 3un9_A 155 CQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARA 234 (372)
T ss_dssp CCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHH
T ss_pred CccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHH
Confidence 345888888888865 2455567789999999999999853 355677888999999999999864 3455
Q ss_pred hhcCCCCCeEeccCCcccc
Q 042537 692 LCQLSRLSVMNLSYNNLSG 710 (789)
Q Consensus 692 l~~l~~L~~L~ls~N~l~~ 710 (789)
+...++|++||+++|++..
T Consensus 235 L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 235 AREHPSLELLHLYFNELSS 253 (372)
T ss_dssp HHHCSSCCEEECTTSSCCH
T ss_pred HHhCCCCCEEeccCCCCCH
Confidence 6677999999999999864
No 149
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.23 E-value=1.1e-11 Score=130.56 Aligned_cols=86 Identities=21% Similarity=0.091 Sum_probs=52.3
Q ss_pred eEEEccc-CccccccchhhhccccCcEEEccCCcceeecCcccccCCCCCEEeCCCCcccccCchhhhcCCCCCeEeccC
Q 042537 627 KILDFSM-NKLSGTIPEEIMDLVGLVALNLSRNNLTGQITPKIDQLKSLDFLDLSQNQFVGGIPSSLCQLSRLSVMNLSY 705 (789)
Q Consensus 627 ~~L~Ls~-N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~ 705 (789)
+.|+|++ |+|++..+..|.++++|+.|+|++|+|++.+|..|.++++|+.|||++|+|++..+..|..++ |+.|++++
T Consensus 34 ~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~ 112 (347)
T 2ifg_A 34 TELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSG 112 (347)
T ss_dssp SEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEEECCS
T ss_pred eEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEEEeeC
Confidence 5566664 666655555666666666666666666666666666666666666666666655555555444 66666666
Q ss_pred CcccccCC
Q 042537 706 NNLSGKIP 713 (789)
Q Consensus 706 N~l~~~~p 713 (789)
|++.+.++
T Consensus 113 N~~~c~c~ 120 (347)
T 2ifg_A 113 NPLHCSCA 120 (347)
T ss_dssp SCCCCCGG
T ss_pred CCccCCCc
Confidence 66655443
No 150
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.23 E-value=1.4e-11 Score=129.93 Aligned_cols=108 Identities=22% Similarity=0.232 Sum_probs=94.1
Q ss_pred eEEEcccC-ccccccchhhhccccCcEEEccC-CcceeecCcccccCCCCCEEeCCCCcccccCchhhhcCCCCCeEecc
Q 042537 627 KILDFSMN-KLSGTIPEEIMDLVGLVALNLSR-NNLTGQITPKIDQLKSLDFLDLSQNQFVGGIPSSLCQLSRLSVMNLS 704 (789)
Q Consensus 627 ~~L~Ls~N-~l~~~~p~~~~~l~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls 704 (789)
..++++++ +++ .+|. +..+++|++|+|++ |+|++..+..|..+++|+.|+|++|+|++..|..|..+++|++|||+
T Consensus 11 ~~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 11 SGLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp SCEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred CEEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence 46799998 898 5888 99999999999996 99998888899999999999999999999999999999999999999
Q ss_pred CCcccccCCCCCccccccccccCCCCCCCCCC
Q 042537 705 YNNLSGKIPLGTQLQSFNASVYAGNPELCGLP 736 (789)
Q Consensus 705 ~N~l~~~~p~~~~~~~~~~~~~~~n~~lc~~~ 736 (789)
+|+|++..|.......+....+.+|++.|+|+
T Consensus 89 ~N~l~~~~~~~~~~~~L~~l~l~~N~~~c~c~ 120 (347)
T 2ifg_A 89 FNALESLSWKTVQGLSLQELVLSGNPLHCSCA 120 (347)
T ss_dssp SSCCSCCCSTTTCSCCCCEEECCSSCCCCCGG
T ss_pred CCccceeCHHHcccCCceEEEeeCCCccCCCc
Confidence 99999655543222236677789999999886
No 151
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.00 E-value=3.9e-08 Score=104.70 Aligned_cols=140 Identities=10% Similarity=0.141 Sum_probs=99.5
Q ss_pred CCCCEEEcCCCccccCCCcccccCCCCcEEEcCCCcCcccCCccccccCcccEEEccCCeeeeeCCcCccCCCCCcEEeC
Q 042537 430 HKLEFLDLSNNILSGRLPDCWMQFDRLAVLSLANNFFSGKIPKSMGFLHSIQTLSLYNNSLIGELPSFFKSCSQLILMDL 509 (789)
Q Consensus 430 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 509 (789)
..++.+.+..+ +......+|.++..|+.+.+..+ ++.+...+|..+.+|+.+.+..+ +..+....|.+|.+|+.+.+
T Consensus 217 ~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l 293 (379)
T 4h09_A 217 KNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVM 293 (379)
T ss_dssp SSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEE
T ss_pred cccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccc
Confidence 66777777554 33355667777888888888765 55566677777888888887654 55566677888888888888
Q ss_pred CCCcccccCchhhhhcCCCCcEEEcCCCcccccCCCCccCCCcCceEeccCCcccccCCccccccc
Q 042537 510 GKNGLSGEIPTWIGEGLPKLVVLSLKSNKFHGNIPFQVCQLSYIQILDLSLNNISGIIPKCLNNFT 575 (789)
Q Consensus 510 s~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~ 575 (789)
.++.++ .++...|.++.+|+.+.+..+ ++.+...+|.++++|+.+.+..+ ++.+...+|.++.
T Consensus 294 ~~~~i~-~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~ 356 (379)
T 4h09_A 294 DNSAIE-TLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGSS 356 (379)
T ss_dssp CCTTCC-EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTSS
T ss_pred cccccc-eehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCCC
Confidence 877777 777777777888888888654 55566667888888888877654 5555566676654
No 152
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.97 E-value=7.6e-08 Score=102.44 Aligned_cols=309 Identities=10% Similarity=0.027 Sum_probs=177.4
Q ss_pred CCcEEEccCCCCcccCchhhhcCCCCcEEECCCCCccEEecCCCcCcccchhhhhCCCCCCEEEccCCCCCCccChhhhh
Q 042537 204 KLVVLDLDSNLLQGSLLEPFDRMVSLRTLYLGFNELEELFLGKNRLNGTINQWLSRMYKLDALSLSGNSLTGVVTESVFS 283 (789)
Q Consensus 204 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~ 283 (789)
+|+.+.+.. .++.+...+|.++.+|+.+.+.. .++.....+|.++ +|+.+.+..+ +. .+....|.
T Consensus 47 ~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~-----------~v~~Ig~~aF~~c-~l~~i~~~~~-l~-~I~~~aF~ 111 (379)
T 4h09_A 47 RISEVRVNS-GITSIGEANFNSCYNMTKVTVAS-----------TVTSIGDGAFADT-KLQSYTGMER-VK-KFGDYVFQ 111 (379)
T ss_dssp GCSEEEECT-TEEEECTTTTTTCTTCCEEEECT-----------TCCEECTTTTTTC-CCCEEEECTT-CC-EECTTTTT
T ss_pred CCEEEEeCC-CccChHHHHhhCCCCCCEEEeCC-----------cceEechhhhcCC-CCceEECCce-ee-Eeccceec
Confidence 566666653 35556667777777777777752 2333334456665 5666666543 33 45555565
Q ss_pred cCCCCcEEEccCCcccccccCCCCCcccceeEeccCccCCCCCchhccCCCCccEEEccCCcCCCCcchhHhhhccCCCe
Q 042537 284 ELSNLKALHLDDNSFTLKFSHDWIPPFQLIIILLGSCQMGPHFPKWLQTQNQIEVLDISDAGISDTVPDWFWDLSHTIAD 363 (789)
Q Consensus 284 ~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~ 363 (789)
.. +|+.+.+..+ +.......|... .++.+.+..+ +.......+..+..++.+.+..+.........+.. .....
T Consensus 112 ~~-~L~~i~lp~~-~~~i~~~~F~~~-~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~--~~~~~ 185 (379)
T 4h09_A 112 GT-DLDDFEFPGA-TTEIGNYIFYNS-SVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLY--NKNKT 185 (379)
T ss_dssp TC-CCSEEECCTT-CCEECTTTTTTC-CCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEE--ETTSS
T ss_pred cC-CcccccCCCc-cccccccccccc-eeeeeeccce-eeccccchhcccccccccccccccceeecccceec--ccccc
Confidence 54 6777777654 222223333322 3333333322 22223344566666766666554332111110000 00000
Q ss_pred eeeccccccccCCCCCCCCCCCCCEEEccCCcccc--cCCCCCCCCcEEEcCCCcCccccchhcccCCCCCCEEEcCCCc
Q 042537 364 FNLSNNHIKGKLPNLSLRFDPFSSSIDISSNYFEG--LIPPLPSNASVLNLSRNKFSESISFLCSINGHKLEFLDLSNNI 441 (789)
Q Consensus 364 L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~--~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~Ls~n~ 441 (789)
.. ..+.....+..+.+....-.- .......+++.+.+..+ +.. +....+..+..|+.+.+..+
T Consensus 186 ~~------------~~~~~~~~~~~~~~~~~~~~i~~~~f~~~~~l~~i~~~~~-~~~-i~~~~f~~~~~L~~i~lp~~- 250 (379)
T 4h09_A 186 IL------------ESYPAAKTGTEFTIPSTVKTVTAYGFSYGKNLKKITITSG-VTT-LGDGAFYGMKALDEIAIPKN- 250 (379)
T ss_dssp EE------------EECCTTCCCSEEECCTTCCEECTTTTTTCSSCSEEECCTT-CCE-ECTTTTTTCSSCCEEEECTT-
T ss_pred ee------------ccccccccccccccccceeEEeecccccccccceeeeccc-eeE-EccccccCCccceEEEcCCC-
Confidence 00 011122223333222211110 01111344555555433 111 22222333378999999776
Q ss_pred cccCCCcccccCCCCcEEEcCCCcCcccCCccccccCcccEEEccCCeeeeeCCcCccCCCCCcEEeCCCCcccccCchh
Q 042537 442 LSGRLPDCWMQFDRLAVLSLANNFFSGKIPKSMGFLHSIQTLSLYNNSLIGELPSFFKSCSQLILMDLGKNGLSGEIPTW 521 (789)
Q Consensus 442 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~ 521 (789)
++..-..+|.++.+|+.+.+..+ +......+|.++++|+.+.+.++.++.+...+|.+|.+|+.+++..+ ++ .+...
T Consensus 251 v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~ 327 (379)
T 4h09_A 251 VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LK-TIQVY 327 (379)
T ss_dssp CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CC-EECTT
T ss_pred ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-cc-EEHHH
Confidence 66566778999999999999754 66567778999999999999999888888889999999999999765 66 78888
Q ss_pred hhhcCCCCcEEEcCCCcccccCCCCccCCCc
Q 042537 522 IGEGLPKLVVLSLKSNKFHGNIPFQVCQLSY 552 (789)
Q Consensus 522 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 552 (789)
.|.++.+|+.+.+..+ ++.+...+|.++..
T Consensus 328 aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~~ 357 (379)
T 4h09_A 328 AFKNCKALSTISYPKS-ITLIESGAFEGSSI 357 (379)
T ss_dssp TTTTCTTCCCCCCCTT-CCEECTTTTTTSSC
T ss_pred HhhCCCCCCEEEECCc-cCEEchhHhhCCCC
Confidence 8888999999998765 66566667776643
No 153
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.86 E-value=1.3e-09 Score=113.84 Aligned_cols=83 Identities=19% Similarity=0.287 Sum_probs=51.2
Q ss_pred cCceeEEEcccCccccccchhhh---ccccCcEEEccCCcceee----cCcccccCCCCCEEeCCCCcccccCchhhhc-
Q 042537 623 LGLVKILDFSMNKLSGTIPEEIM---DLVGLVALNLSRNNLTGQ----ITPKIDQLKSLDFLDLSQNQFVGGIPSSLCQ- 694 (789)
Q Consensus 623 l~~L~~L~Ls~N~l~~~~p~~~~---~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~- 694 (789)
++.|+.|+|++|.+.+..+..+. .+++|++|+|+.|.+++. ++..+..+++|+.|+|++|.++...-..+..
T Consensus 251 ~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~a 330 (362)
T 2ra8_A 251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKS 330 (362)
T ss_dssp CTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHH
T ss_pred CCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHH
Confidence 45567777777777654443333 467778888887777653 2333455677888888877776544444443
Q ss_pred CCCCCeEeccCCc
Q 042537 695 LSRLSVMNLSYNN 707 (789)
Q Consensus 695 l~~L~~L~ls~N~ 707 (789)
+ ...+++++++
T Consensus 331 l--g~~~~~~~~~ 341 (362)
T 2ra8_A 331 L--PMKIDVSDSQ 341 (362)
T ss_dssp C--CSEEECCSBC
T ss_pred c--CCEEEecCCc
Confidence 2 3456666665
No 154
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.75 E-value=1.2e-08 Score=106.48 Aligned_cols=211 Identities=17% Similarity=0.150 Sum_probs=115.5
Q ss_pred CCcEEEEEcCCCCCC-CC---cccccCccccCCCCCCEEeCCCCCCCC--------CCCcccccCCCCCCEEecCCCcCC
Q 042537 46 TGHVIVLDLQVLVHS-EP---LKGTISPSLLKLYHLRHLDLSENDFSG--------SRIPEFIGSLNKLRYLSLSSAEFE 113 (789)
Q Consensus 46 ~~~v~~l~L~~~~~~-~~---l~~~l~~~~~~l~~L~~L~Ls~n~i~~--------~~~~~~~~~l~~L~~L~Ls~n~i~ 113 (789)
..+|+.|.+..+..+ .. ....+.+++.++++|+.|.+....... ..+...+..+++|+.|+|++|.-.
T Consensus 106 ~~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l 185 (362)
T 2ra8_A 106 LPSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL 185 (362)
T ss_dssp GGGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC
T ss_pred chhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc
Confidence 356888887753211 00 011234557788999999987654321 024455677899999999887412
Q ss_pred CCCCccccCCCCCcEEeccCccCCCCcchHHhh--CCCCCCCEEEcCCC--CCCCCccccccccccCCCCCCeEEccCCC
Q 042537 114 GPIPSQLGNLSRLKYLDLSYINLNKSRDWLRII--DKLPSLRTLNLEHC--HLPPIIPSDLLHLNFSTSSLGALYLFENS 189 (789)
Q Consensus 114 ~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l--~~l~~L~~L~L~~n--~l~~~~~~~~~~~~l~~~~L~~L~l~~n~ 189 (789)
.++. +. +++|++|++..+.+... ....+ ..+|+|++|+|+.+ ...+... . ..+.
T Consensus 186 -~l~~-~~-~~~L~~L~L~~~~l~~~--~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~--~-------~~l~-------- 243 (362)
T 2ra8_A 186 -SIGK-KP-RPNLKSLEIISGGLPDS--VVEDILGSDLPNLEKLVLYVGVEDYGFDGD--M-------NVFR-------- 243 (362)
T ss_dssp -BCCS-CB-CTTCSEEEEECSBCCHH--HHHHHHHSBCTTCCEEEEECBCGGGTCCSC--G-------GGTG--------
T ss_pred -eecc-cc-CCCCcEEEEecCCCChH--HHHHHHHccCCCCcEEEEeccccccccchh--H-------HHHH--------
Confidence 2333 43 88999999998887642 22333 37899999988642 1111100 0 0000
Q ss_pred CCCCchhHHH-hhcCCCcEEEccCCCCcccCchhhh---cCCCCcEEECCCCCccEEecCCCcCcccc----hhhhhCCC
Q 042537 190 LSSSIYPWLF-NISSKLVVLDLDSNLLQGSLLEPFD---RMVSLRTLYLGFNELEELFLGKNRLNGTI----NQWLSRMY 261 (789)
Q Consensus 190 l~~~~~~~~~-~~~~~L~~L~Ls~n~i~~~~~~~~~---~l~~L~~L~L~~n~L~~L~L~~n~l~~~~----~~~l~~l~ 261 (789)
..+. ...++|++|++.+|.+....+..+. .+++|++|+|+ .|.+.+.. +..+.+++
T Consensus 244 ------~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs----------~n~L~d~G~~~L~~~L~~l~ 307 (362)
T 2ra8_A 244 ------PLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDIS----------AGVLTDEGARLLLDHVDKIK 307 (362)
T ss_dssp ------GGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECC----------SSCCBHHHHHHHHTTHHHHT
T ss_pred ------HHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECC----------CCCCChHHHHHHHhhcccCC
Confidence 0000 1123566666666665543333333 24556666665 44444432 22334567
Q ss_pred CCCEEEccCCCCCCccChhhhhc-CCCCcEEEccCCc
Q 042537 262 KLDALSLSGNSLTGVVTESVFSE-LSNLKALHLDDNS 297 (789)
Q Consensus 262 ~L~~L~L~~n~l~~~~~~~~~~~-l~~L~~L~L~~n~ 297 (789)
+|+.|++++|.++... ...+.. + ...++++.++
T Consensus 308 ~L~~L~L~~n~i~d~~-~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 308 HLKFINMKYNYLSDEM-KKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp TCSEEECCSBBCCHHH-HHHHHHHC--CSEEECCSBC
T ss_pred cceEEECCCCcCCHHH-HHHHHHHc--CCEEEecCCc
Confidence 8888888888776322 122332 2 3567777766
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.40 E-value=1.2e-07 Score=89.04 Aligned_cols=84 Identities=17% Similarity=0.190 Sum_probs=49.8
Q ss_pred eeEEEcccCccccc----cchhhhccccCcEEEccCCcceee----cCcccccCCCCCEEeC--CCCccccc----Cchh
Q 042537 626 VKILDFSMNKLSGT----IPEEIMDLVGLVALNLSRNNLTGQ----ITPKIDQLKSLDFLDL--SQNQFVGG----IPSS 691 (789)
Q Consensus 626 L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~L--s~N~l~~~----~p~~ 691 (789)
|++|+|++|++... +...+...+.|++|+|++|.|+.. +...+...++|++|+| ++|.+... +...
T Consensus 67 L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~ 146 (185)
T 1io0_A 67 VKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANM 146 (185)
T ss_dssp CCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHH
T ss_pred cCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHH
Confidence 35555555555432 233344456677777777776643 3444556667777777 66777643 2344
Q ss_pred hhcCCCCCeEeccCCccc
Q 042537 692 LCQLSRLSVMNLSYNNLS 709 (789)
Q Consensus 692 l~~l~~L~~L~ls~N~l~ 709 (789)
+...+.|++|++++|.+.
T Consensus 147 L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 147 LEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHCSSCCEEECCCSSHH
T ss_pred HHhCCCcCEEeccCCCCC
Confidence 555577777777777764
No 156
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.37 E-value=4.1e-07 Score=89.73 Aligned_cols=65 Identities=26% Similarity=0.389 Sum_probs=28.2
Q ss_pred cccCcEEEccCCccee--ecCcccccCCCCCEEeCCCCcccccCchhhhcCC--CCCeEeccCCcccccCC
Q 042537 647 LVGLVALNLSRNNLTG--QITPKIDQLKSLDFLDLSQNQFVGGIPSSLCQLS--RLSVMNLSYNNLSGKIP 713 (789)
Q Consensus 647 l~~L~~L~Ls~N~l~~--~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~--~L~~L~ls~N~l~~~~p 713 (789)
+++|+.|+|++|+|++ .+|..+..+++|+.|+|++|+|++. ..+..+. .|++|++++|++++.+|
T Consensus 169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~ 237 (267)
T 3rw6_A 169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFR 237 (267)
T ss_dssp CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCS
T ss_pred CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccC
Confidence 4444444444444443 2233334444444444444444433 1222222 44455555555444444
No 157
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.32 E-value=2.9e-07 Score=90.83 Aligned_cols=81 Identities=22% Similarity=0.271 Sum_probs=67.4
Q ss_pred cccCceeEEEcccCcccc--ccchhhhccccCcEEEccCCcceeecCcccccCC--CCCEEeCCCCcccccCc-------
Q 042537 621 STLGLVKILDFSMNKLSG--TIPEEIMDLVGLVALNLSRNNLTGQITPKIDQLK--SLDFLDLSQNQFVGGIP------- 689 (789)
Q Consensus 621 ~~l~~L~~L~Ls~N~l~~--~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~--~L~~L~Ls~N~l~~~~p------- 689 (789)
..++.|+.|+||+|+|++ .+|..+..+++|+.|+|++|+|++. ..+..+. +|++|+|++|.+.+.+|
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence 457899999999999997 4567888999999999999999864 3455555 99999999999997665
Q ss_pred hhhhcCCCCCeEec
Q 042537 690 SSLCQLSRLSVMNL 703 (789)
Q Consensus 690 ~~l~~l~~L~~L~l 703 (789)
..+..+++|+.||=
T Consensus 245 ~il~~~P~L~~LDg 258 (267)
T 3rw6_A 245 AIRERFPKLLRLDG 258 (267)
T ss_dssp HHHHHCTTCCEESS
T ss_pred HHHHHCcccCeECC
Confidence 34778999998863
No 158
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.21 E-value=1.1e-06 Score=82.60 Aligned_cols=18 Identities=6% Similarity=-0.046 Sum_probs=9.3
Q ss_pred hhcCCCCcEEEccCCccc
Q 042537 282 FSELSNLKALHLDDNSFT 299 (789)
Q Consensus 282 ~~~l~~L~~L~L~~n~i~ 299 (789)
+...++|++|++++|.+.
T Consensus 147 L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 147 LEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHCSSCCEEECCCSSHH
T ss_pred HHhCCCcCEEeccCCCCC
Confidence 344455555555555543
No 159
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.90 E-value=4.6e-06 Score=75.95 Aligned_cols=83 Identities=13% Similarity=0.093 Sum_probs=68.7
Q ss_pred ceeEEEcccCccccccchhhhccccCcEEEccCCc-ceeecCcccccC----CCCCEEeCCCCc-ccccCchhhhcCCCC
Q 042537 625 LVKILDFSMNKLSGTIPEEIMDLVGLVALNLSRNN-LTGQITPKIDQL----KSLDFLDLSQNQ-FVGGIPSSLCQLSRL 698 (789)
Q Consensus 625 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~-l~~~~p~~~~~l----~~L~~L~Ls~N~-l~~~~p~~l~~l~~L 698 (789)
.|+.||++++.++..--..+..+++|+.|+|++|. +++.--..+..+ ++|++|+|++|. ++..--..+..+++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 58999999999987666678899999999999995 776544556654 479999999985 876555678899999
Q ss_pred CeEeccCCc
Q 042537 699 SVMNLSYNN 707 (789)
Q Consensus 699 ~~L~ls~N~ 707 (789)
++|++++++
T Consensus 142 ~~L~L~~c~ 150 (176)
T 3e4g_A 142 KYLFLSDLP 150 (176)
T ss_dssp CEEEEESCT
T ss_pred CEEECCCCC
Confidence 999999986
No 160
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.58 E-value=3.3e-05 Score=70.31 Aligned_cols=60 Identities=13% Similarity=0.222 Sum_probs=38.3
Q ss_pred CceeEEEcccCc-cccccchhhhcc----ccCcEEEccCCc-ceeecCcccccCCCCCEEeCCCCc
Q 042537 624 GLVKILDFSMNK-LSGTIPEEIMDL----VGLVALNLSRNN-LTGQITPKIDQLKSLDFLDLSQNQ 683 (789)
Q Consensus 624 ~~L~~L~Ls~N~-l~~~~p~~~~~l----~~L~~L~Ls~N~-l~~~~p~~~~~l~~L~~L~Ls~N~ 683 (789)
+.|+.|+|++|. +++.--..+..+ ++|++|+|++|. +|..--..+..+++|++|+|+++.
T Consensus 85 ~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~~L~L~~c~ 150 (176)
T 3e4g_A 85 QYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDLP 150 (176)
T ss_dssp SCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTCCEEEEESCT
T ss_pred CCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCCCEEECCCCC
Confidence 334667777663 554333344443 367888888874 765544556777888888888875
No 161
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.29 E-value=0.00034 Score=60.75 Aligned_cols=60 Identities=20% Similarity=0.178 Sum_probs=37.8
Q ss_pred EEEccCCcce-eecCcccccCCCCCEEeCCCCcccccCchhhhcCCCCCeEeccCCcccccCC
Q 042537 652 ALNLSRNNLT-GQITPKIDQLKSLDFLDLSQNQFVGGIPSSLCQLSRLSVMNLSYNNLSGKIP 713 (789)
Q Consensus 652 ~L~Ls~N~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p 713 (789)
.++.+++.++ ..+|..+. ++|+.|+|++|+|+.+.+..|..+++|++|+|++|++.+..-
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~CdC~ 72 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDCR 72 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBCSGG
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeeccCc
Confidence 4556666654 23443322 357777777777776666667777777777777777765443
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.15 E-value=0.00022 Score=66.17 Aligned_cols=83 Identities=14% Similarity=0.168 Sum_probs=49.6
Q ss_pred eeEEEcccCccccc----cchhhhccccCcEEEccCCcceee----cCcccccCCCCCEEeCCCCc---ccc----cCch
Q 042537 626 VKILDFSMNKLSGT----IPEEIMDLVGLVALNLSRNNLTGQ----ITPKIDQLKSLDFLDLSQNQ---FVG----GIPS 690 (789)
Q Consensus 626 L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~Ls~N~---l~~----~~p~ 690 (789)
|+.|+|++|+|.+. +.+.+..-+.|++|+|++|.|+.. +-+.+..-+.|++|+|++|. +.. .+.+
T Consensus 72 L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~ 151 (197)
T 1pgv_A 72 IEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMM 151 (197)
T ss_dssp CCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHH
T ss_pred cCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHH
Confidence 45666666666532 334444556777777777777643 22334555678888887653 332 2334
Q ss_pred hhhcCCCCCeEeccCCcc
Q 042537 691 SLCQLSRLSVMNLSYNNL 708 (789)
Q Consensus 691 ~l~~l~~L~~L~ls~N~l 708 (789)
.+..-+.|+.|+++.|..
T Consensus 152 aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 152 AIEENESLLRVGISFASM 169 (197)
T ss_dssp HHHHCSSCCEEECCCCCH
T ss_pred HHHhCCCcCeEeccCCCc
Confidence 566667788888877654
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.98 E-value=0.00057 Score=63.45 Aligned_cols=20 Identities=15% Similarity=-0.032 Sum_probs=12.2
Q ss_pred hhhhhCCCCCCEEEccCCCC
Q 042537 254 NQWLSRMYKLDALSLSGNSL 273 (789)
Q Consensus 254 ~~~l~~l~~L~~L~L~~n~l 273 (789)
...+..-+.|+.|+++.|.+
T Consensus 150 a~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 150 MMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HHHHHHCSSCCEEECCCCCH
T ss_pred HHHHHhCCCcCeEeccCCCc
Confidence 34455566677777766654
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.61 E-value=0.0038 Score=54.02 Aligned_cols=57 Identities=16% Similarity=0.173 Sum_probs=36.0
Q ss_pred EEeCCCCCCCCCCCcccccCCCCCCEEecCCCcCCCCCCccccCCCCCcEEeccCccCC
Q 042537 79 HLDLSENDFSGSRIPEFIGSLNKLRYLSLSSAEFEGPIPSQLGNLSRLKYLDLSYINLN 137 (789)
Q Consensus 79 ~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~ 137 (789)
+++.++++++...+|..+. ++|++|+|++|+|+.+.+..|..+++|++|+|++|.+.
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 5666666665112454332 45777777777777666666777777777777777654
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=51.27 E-value=13 Score=29.63 Aligned_cols=46 Identities=15% Similarity=0.271 Sum_probs=26.0
Q ss_pred CcccchhhhhCCCCCCEEEccCCCCCCccChhhhhcCCCCcEEEccCC
Q 042537 249 LNGTINQWLSRMYKLDALSLSGNSLTGVVTESVFSELSNLKALHLDDN 296 (789)
Q Consensus 249 l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n 296 (789)
++..-..+|.+|.+|+.+.+..+ ++ .|....|.+|.+|+.+.+...
T Consensus 8 vt~I~~~aF~~c~~L~~i~iP~~-v~-~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 8 VVGMDKSLFAGNTVIREITVQPN-IG-LLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCSSCSCTTTTCTTCCCEEECTT-SS-CCCTTSSTTCTTCCCEEECCS
T ss_pred cCEecHHHhcCCCCCcEEEcCCc-hh-eEcHHHHhccCCccEEEEcCC
Confidence 33334445666666666666554 22 344456677777777766553
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=47.37 E-value=22 Score=28.29 Aligned_cols=39 Identities=15% Similarity=0.143 Sum_probs=17.3
Q ss_pred CccccccCcccEEEccCCeeeeeCCcCccCCCCCcEEeCC
Q 042537 471 PKSMGFLHSIQTLSLYNNSLIGELPSFFKSCSQLILMDLG 510 (789)
Q Consensus 471 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls 510 (789)
..+|.++.+|+.+.+-.+ ++.+-...|.+|.+|+.+.+.
T Consensus 13 ~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~ 51 (100)
T 2lz0_A 13 KSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILT 51 (100)
T ss_dssp SCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEEC
T ss_pred HHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEc
Confidence 334444444444444432 222334445555555544444
No 167
>3ox7_P MH027; urokinase-type plasminogen activator, peptidyl inhibitor, pharmacophore, hydrolase, hydrolase-hydrolase inhibitor COM; HET: PG4; 1.58A {Homo sapiens} PDB: 3oy5_P 3oy6_P
Probab=36.65 E-value=11 Score=19.56 Aligned_cols=12 Identities=33% Similarity=0.983 Sum_probs=8.6
Q ss_pred CCCCCceeeeEe
Q 042537 31 KRDCCYWRGVRC 42 (789)
Q Consensus 31 ~~~~c~w~gv~c 42 (789)
.+..|+|+|..-
T Consensus 4 adgacswrglen 15 (23)
T 3ox7_P 4 ADGACSWRGLEN 15 (26)
T ss_pred cCcccccccchh
Confidence 345799999753
Done!