BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042538
(167 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q09436|MEX6_CAEEL Zinc finger protein mex-6 OS=Caenorhabditis elegans GN=mex-6 PE=3
SV=3
Length = 467
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 49/94 (52%), Gaps = 12/94 (12%)
Query: 1 FAHGKEELRSTLFPTT--KNKSEAQICKSFTTGS---CIYGSKCRFIHQVMTDSALVLTI 55
FAHG +ELR++ PT NK + ++CK+F G C YG +C F+H T+ +
Sbjct: 297 FAHGLKELRASDIPTRYPNNKYKTKLCKNFARGGSGVCPYGLRCEFVHPSDTEFQNIPPY 356
Query: 56 Q---MEDHSMKACVCESPVTPVTFKPRLTNTAIK 86
Q +E+H + E V ++PR +T+ K
Sbjct: 357 QRKMVEEHD---SIPEDYVV-ARYQPRFMHTSGK 386
>sp|Q9XUB2|MEX5_CAEEL Zinc finger protein mex-5 OS=Caenorhabditis elegans GN=mex-5 PE=1
SV=1
Length = 468
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 30/48 (62%), Gaps = 5/48 (10%)
Query: 1 FAHGKEELRSTLFPTT--KNKSEAQICKSFT---TGSCIYGSKCRFIH 43
FAHG +ELR+T P NK + ++CK+F TG C YG +C F+H
Sbjct: 294 FAHGLKELRATDAPARYPNNKYKTKLCKNFARGGTGFCPYGLRCEFVH 341
>sp|P17431|TISB_RAT Zinc finger protein 36, C3H1 type-like 1 OS=Rattus norvegicus
GN=Zfp36l1 PE=1 SV=1
Length = 338
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 29/53 (54%), Gaps = 4/53 (7%)
Query: 1 FAHGKEELRSTLFPTTKNKSEAQICKSF-TTGSCIYGSKCRFIHQVMTDSALV 52
FAHG ELRS T K + ++C++F T G C YG +C FIH AL
Sbjct: 137 FAHGIHELRSL---TRHPKYKTELCRTFHTIGFCPYGPRCHFIHNAEERRALA 186
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 14/55 (25%)
Query: 1 FAHGKEELRSTLFPTTKNKSEAQI---------CKSFT-TGSCIYGSKCRFIHQV 45
F+ G E L PT K Q+ C+ F G+C YG KC+F H +
Sbjct: 91 FSEGGERL----LPTQKQPGSGQVNSSRYKTELCRPFEENGACKYGDKCQFAHGI 141
>sp|P23950|TISB_MOUSE Zinc finger protein 36, C3H1 type-like 1 OS=Mus musculus GN=Zfp36l1
PE=1 SV=1
Length = 338
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 29/53 (54%), Gaps = 4/53 (7%)
Query: 1 FAHGKEELRSTLFPTTKNKSEAQICKSF-TTGSCIYGSKCRFIHQVMTDSALV 52
FAHG ELRS T K + ++C++F T G C YG +C FIH AL
Sbjct: 137 FAHGIHELRSL---TRHPKYKTELCRTFHTIGFCPYGPRCHFIHNAEERRALA 186
Score = 32.3 bits (72), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 14/55 (25%)
Query: 1 FAHGKEELRSTLFPTTKNKSEAQI---------CKSFT-TGSCIYGSKCRFIHQV 45
F+ G E L PT K Q+ C+ F G+C YG KC+F H +
Sbjct: 91 FSEGGERL----LPTQKQPGSGQVNSSRYKTELCRPFEENGACKYGDKCQFAHGI 141
>sp|Q07352|TISB_HUMAN Zinc finger protein 36, C3H1 type-like 1 OS=Homo sapiens GN=ZFP36L1
PE=1 SV=1
Length = 338
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 29/53 (54%), Gaps = 4/53 (7%)
Query: 1 FAHGKEELRSTLFPTTKNKSEAQICKSF-TTGSCIYGSKCRFIHQVMTDSALV 52
FAHG ELRS T K + ++C++F T G C YG +C FIH AL
Sbjct: 137 FAHGIHELRSL---TRHPKYKTELCRTFHTIGFCPYGPRCHFIHNAEERRALA 186
Score = 32.0 bits (71), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 14/55 (25%)
Query: 1 FAHGKEELRSTLFPTTKNKSEAQI---------CKSFT-TGSCIYGSKCRFIHQV 45
F+ G E L PT K Q+ C+ F G+C YG KC+F H +
Sbjct: 91 FSEGGERL----LPTQKQPGGGQVNSSRYKTELCRPFEENGACKYGDKCQFAHGI 141
>sp|Q6S9E0|TTP_SHEEP Tristetraprolin OS=Ovis aries GN=ZFP36 PE=2 SV=1
Length = 325
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 28/51 (54%), Gaps = 4/51 (7%)
Query: 1 FAHGKEELRSTLFPTTKNKSEAQIC-KSFTTGSCIYGSKCRFIHQVMTDSA 50
FAHG ELR P+ K + ++C K + G C YGS+C FIH D A
Sbjct: 124 FAHGLGELRQ---PSRHPKYKTELCHKFYLQGRCPYGSRCHFIHNPSEDLA 171
Score = 30.4 bits (67), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 19/24 (79%), Gaps = 1/24 (4%)
Query: 23 QICKSFT-TGSCIYGSKCRFIHQV 45
++C++F+ +G C YG+KC+F H +
Sbjct: 105 ELCRTFSESGRCRYGAKCQFAHGL 128
>sp|Q805B4|TISDB_XENLA Zinc finger protein 36, C3H1 type-like 2-B OS=Xenopus laevis
GN=zfp36l2-B PE=2 SV=1
Length = 364
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 27/46 (58%), Gaps = 4/46 (8%)
Query: 1 FAHGKEELRSTLFPTTKNKSEAQICKSF-TTGSCIYGSKCRFIHQV 45
FAHG ELRS T K + ++C++F T G C YG +C FIH
Sbjct: 156 FAHGFHELRSL---TRHPKYKTELCRTFHTIGFCPYGPRCHFIHNA 198
>sp|Q7ZXW9|TISDA_XENLA Zinc finger protein 36, C3H1 type-like 2-A OS=Xenopus laevis
GN=zfp36l2-A PE=2 SV=1
Length = 363
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 27/46 (58%), Gaps = 4/46 (8%)
Query: 1 FAHGKEELRSTLFPTTKNKSEAQICKSF-TTGSCIYGSKCRFIHQV 45
FAHG ELRS T K + ++C++F T G C YG +C FIH
Sbjct: 154 FAHGFHELRSL---TRHPKYKTELCRTFHTIGFCPYGPRCHFIHNA 196
>sp|P47974|TISD_HUMAN Zinc finger protein 36, C3H1 type-like 2 OS=Homo sapiens GN=ZFP36L2
PE=1 SV=3
Length = 494
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 27/46 (58%), Gaps = 4/46 (8%)
Query: 1 FAHGKEELRSTLFPTTKNKSEAQICKSF-TTGSCIYGSKCRFIHQV 45
FAHG ELRS T K + ++C++F T G C YG +C FIH
Sbjct: 176 FAHGFHELRSL---TRHPKYKTELCRTFHTIGFCPYGPRCHFIHNA 218
>sp|P47973|TTP_RAT Tristetraprolin OS=Rattus norvegicus GN=Zfp36 PE=2 SV=1
Length = 320
Score = 40.4 bits (93), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 27/52 (51%), Gaps = 4/52 (7%)
Query: 1 FAHGKEELRSTLFPTTKNKSEAQIC-KSFTTGSCIYGSKCRFIHQVMTDSAL 51
FAHG ELR K + ++C K + G C YGS+C FIH D AL
Sbjct: 119 FAHGPGELRQA---NRHPKYKTELCHKFYLQGRCPYGSRCHFIHNPTEDLAL 167
>sp|P22893|TTP_MOUSE Tristetraprolin OS=Mus musculus GN=Zfp36 PE=1 SV=1
Length = 319
Score = 40.4 bits (93), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 27/52 (51%), Gaps = 4/52 (7%)
Query: 1 FAHGKEELRSTLFPTTKNKSEAQIC-KSFTTGSCIYGSKCRFIHQVMTDSAL 51
FAHG ELR K + ++C K + G C YGS+C FIH D AL
Sbjct: 118 FAHGLGELRQA---NRHPKYKTELCHKFYLQGRCPYGSRCHFIHNPTEDLAL 166
>sp|P23949|TISD_MOUSE Zinc finger protein 36, C3H1 type-like 2 OS=Mus musculus GN=Zfp36l2
PE=2 SV=1
Length = 367
Score = 39.3 bits (90), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 27/46 (58%), Gaps = 4/46 (8%)
Query: 1 FAHGKEELRSTLFPTTKNKSEAQICKSF-TTGSCIYGSKCRFIHQV 45
FAHG ELRS T K + ++C++F T G C YG +C FIH
Sbjct: 149 FAHGFHELRSL---TRHPKYKTELCRTFHTIGFCPYGPRCHFIHNA 191
>sp|Q9SD61|C3H42_ARATH Zinc finger CCCH domain-containing protein 42 OS=Arabidopsis
thaliana GN=At3g47120 PE=2 SV=1
Length = 352
Score = 39.3 bits (90), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 22/40 (55%)
Query: 4 GKEELRSTLFPTTKNKSEAQICKSFTTGSCIYGSKCRFIH 43
G EE RS+ + KN+ +C++F G C G C+F H
Sbjct: 165 GHEEDRSSKWDHDKNREGRGVCRAFQRGECTRGDSCKFSH 204
Score = 29.6 bits (65), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 9/27 (33%), Positives = 15/27 (55%)
Query: 17 KNKSEAQICKSFTTGSCIYGSKCRFIH 43
+N+ +C++F G C G C+F H
Sbjct: 128 QNREARGVCRAFQRGECTRGDSCKFSH 154
>sp|P26651|TTP_HUMAN Tristetraprolin OS=Homo sapiens GN=ZFP36 PE=1 SV=1
Length = 326
Score = 38.9 bits (89), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 26/51 (50%), Gaps = 4/51 (7%)
Query: 1 FAHGKEELRSTLFPTTKNKSEAQIC-KSFTTGSCIYGSKCRFIHQVMTDSA 50
FAHG ELR K + ++C K + G C YGS+C FIH D A
Sbjct: 126 FAHGLGELRQA---NRHPKYKTELCHKFYLQGRCPYGSRCHFIHNPSEDLA 173
Score = 30.4 bits (67), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 21/28 (75%), Gaps = 1/28 (3%)
Query: 19 KSEAQICKSFT-TGSCIYGSKCRFIHQV 45
+ + ++C++F+ +G C YG+KC+F H +
Sbjct: 103 RYKTELCRTFSESGRCRYGAKCQFAHGL 130
>sp|P53781|TTP_BOVIN Tristetraprolin OS=Bos taurus GN=ZFP36 PE=2 SV=1
Length = 324
Score = 38.5 bits (88), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
Query: 1 FAHGKEELRSTLFPTTKNKSEAQIC-KSFTTGSCIYGSKCRFIHQVMTDSA 50
FAHG ELR + K + ++C K + G C YGS+C FIH D A
Sbjct: 124 FAHGLGELRQA---SRHPKYKTELCHKFYLQGRCPYGSRCHFIHNPSEDLA 171
Score = 30.4 bits (67), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 19/24 (79%), Gaps = 1/24 (4%)
Query: 23 QICKSFT-TGSCIYGSKCRFIHQV 45
++C++F+ +G C YG+KC+F H +
Sbjct: 105 ELCRTFSESGRCRYGAKCQFAHGL 128
>sp|Q6P158|DHX57_HUMAN Putative ATP-dependent RNA helicase DHX57 OS=Homo sapiens GN=DHX57
PE=1 SV=2
Length = 1386
Score = 38.5 bits (88), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 23/33 (69%), Gaps = 2/33 (6%)
Query: 15 TTKNKSE--AQICKSFTTGSCIYGSKCRFIHQV 45
+TKN E +ICK + G+C +GSKCRF H+V
Sbjct: 293 STKNVQENSLEICKFYLKGNCKFGSKCRFKHEV 325
>sp|A4IIN5|TISD_XENTR Zinc finger protein 36, C3H1 type-like 2 OS=Xenopus tropicalis
GN=zfp36l2 PE=2 SV=1
Length = 333
Score = 38.5 bits (88), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 26/46 (56%), Gaps = 4/46 (8%)
Query: 1 FAHGKEELRSTLFPTTKNKSEAQICKSF-TTGSCIYGSKCRFIHQV 45
FAHG ELRS T K + ++C++F T G C YG +C IH
Sbjct: 124 FAHGFHELRSL---TRHPKYKTELCRTFHTIGFCPYGPRCHLIHNA 166
>sp|Q94131|PIE1_CAEEL Pharynx and intestine in excess protein 1 OS=Caenorhabditis elegans
GN=pie-1 PE=1 SV=1
Length = 335
Score = 37.7 bits (86), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 13/21 (61%), Positives = 16/21 (76%)
Query: 23 QICKSFTTGSCIYGSKCRFIH 43
QIC +F G+C YG +CRFIH
Sbjct: 188 QICHNFERGNCRYGPRCRFIH 208
>sp|Q5NU14|MKRN1_TAKRU Probable E3 ubiquitin-protein ligase makorin-1 OS=Takifugu
rubripes GN=mkrn1 PE=2 SV=1
Length = 429
Score = 37.4 bits (85), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 24/42 (57%)
Query: 16 TKNKSEAQICKSFTTGSCIYGSKCRFIHQVMTDSALVLTIQM 57
T +K A +CK F G+C++G +CRF H T S V QM
Sbjct: 45 TSSKPAAMMCKFFQKGNCVFGERCRFEHCKPTKSEEVSNPQM 86
>sp|Q8IZP6|R113B_HUMAN RING finger protein 113B OS=Homo sapiens GN=RNF113B PE=1 SV=3
Length = 322
Score = 37.4 bits (85), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Query: 12 LFPTTKNKSEAQICKSF-TTGSCIYGSKCRFIHQVMTDSALVLTIQMEDHSMKACVCES 69
L T + + ICK + TG C +G C+F+H +D L I+ E + C+CE
Sbjct: 183 LRATVRWDYQPDICKDYKETGFCGFGDSCKFLHD-RSDYKLGWEIERELEEGRYCICED 240
>sp|Q8JFF3|MKRN1_SERQU Probable E3 ubiquitin-protein ligase makorin-1 OS=Seriola
quinqueradiata GN=mkrn1 PE=2 SV=1
Length = 435
Score = 37.4 bits (85), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 19/28 (67%)
Query: 16 TKNKSEAQICKSFTTGSCIYGSKCRFIH 43
T +K A ICK F G+C++G +CRF H
Sbjct: 45 TNSKPAAMICKFFQKGNCVFGDRCRFEH 72
>sp|Q9FNZ1|C3H63_ARATH Zinc finger CCCH domain-containing protein 63 OS=Arabidopsis
thaliana GN=ZFWD2 PE=2 SV=1
Length = 443
Score = 37.0 bits (84), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 21/38 (55%)
Query: 23 QICKSFTTGSCIYGSKCRFIHQVMTDSALVLTIQMEDH 60
++C + G+C YG KCR++H + L Q++ H
Sbjct: 113 KVCNFWVDGNCTYGDKCRYLHCWSKGESFALLTQLDGH 150
>sp|Q5T200|ZC3HD_HUMAN Zinc finger CCCH domain-containing protein 13 OS=Homo sapiens
GN=ZC3H13 PE=1 SV=1
Length = 1668
Score = 37.0 bits (84), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 21/32 (65%)
Query: 12 LFPTTKNKSEAQICKSFTTGSCIYGSKCRFIH 43
L P+T + +E Q TG+C+YG+ CRF+H
Sbjct: 30 LGPSTGSTAETQCRNWLKTGNCLYGNTCRFVH 61
>sp|Q4SRI6|MKRN1_TETNG Probable E3 ubiquitin-protein ligase makorin-1 OS=Tetraodon
nigroviridis GN=mkrn1 PE=3 SV=1
Length = 372
Score = 37.0 bits (84), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 19/28 (67%)
Query: 16 TKNKSEAQICKSFTTGSCIYGSKCRFIH 43
T +K A ICK F G+C++G +CRF H
Sbjct: 45 TNSKPAAMICKFFQKGNCVFGERCRFDH 72
>sp|Q9FNZ2|C3H48_ARATH Zinc finger CCCH domain-containing protein 48 OS=Arabidopsis
thaliana GN=ZFWD1 PE=2 SV=1
Length = 430
Score = 36.6 bits (83), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 22/38 (57%)
Query: 23 QICKSFTTGSCIYGSKCRFIHQVMTDSALVLTIQMEDH 60
++CK + G+C YG KCR++H + L Q++ H
Sbjct: 106 KLCKFWVDGNCPYGDKCRYLHCWSKGDSFSLLTQLDGH 143
>sp|Q5Z807|C3H46_ORYSJ Zinc finger CCCH domain-containing protein 46 OS=Oryza sativa
subsp. japonica GN=Os06g0704300 PE=2 SV=1
Length = 390
Score = 36.6 bits (83), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 18/21 (85%)
Query: 23 QICKSFTTGSCIYGSKCRFIH 43
+IC++F GSC YG++CR++H
Sbjct: 6 EICRNFQRGSCKYGAQCRYLH 26
>sp|Q9FWS3|C3H16_ARATH Zinc finger CCCH domain-containing protein 16 OS=Arabidopsis
thaliana GN=At1g75340 PE=2 SV=2
Length = 435
Score = 35.8 bits (81), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 16/21 (76%)
Query: 23 QICKSFTTGSCIYGSKCRFIH 43
++C++F GSC YG CRF+H
Sbjct: 4 ELCRNFQRGSCRYGENCRFLH 24
>sp|P47977|CTH2_YEAST mRNA decay factor CTH2 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=TIS11 PE=1 SV=1
Length = 285
Score = 35.4 bits (80), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 27/40 (67%), Gaps = 1/40 (2%)
Query: 7 ELRSTLFPTTKNKSEAQICKSFT-TGSCIYGSKCRFIHQV 45
+++S + T K + ++C+SFT GSC YGSKC+F H +
Sbjct: 157 KVKSQVQETPKQLYKTELCESFTLKGSCPYGSKCQFAHGL 196
>sp|P47980|TIS1_DROME Protein TIS11 OS=Drosophila melanogaster GN=Tis11 PE=2 SV=2
Length = 436
Score = 35.4 bits (80), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 4/46 (8%)
Query: 1 FAHGKEELRSTLFPTTKNKSEAQICKSF-TTGSCIYGSKCRFIHQV 45
FAHG ELR+ K + + C++F + G C YG +C F+H
Sbjct: 158 FAHGSHELRNV---HRHPKYKTEYCRTFHSVGFCPYGPRCHFVHNA 200
Score = 29.6 bits (65), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 14 PTTKNKSEAQICKSFT-TGSCIYGSKCRFIH 43
P ++ + ++C+ F G C YG KC+F H
Sbjct: 130 PMNTSRYKTELCRPFEEAGECKYGEKCQFAH 160
>sp|P47979|ZFS1_SCHPO Zinc finger protein zfs1 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=zfs1 PE=1 SV=1
Length = 404
Score = 35.4 bits (80), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 26/44 (59%), Gaps = 4/44 (9%)
Query: 1 FAHGKEELRSTLFPTTKNKSEAQICKSFTT-GSCIYGSKCRFIH 43
FAHG +EL+ P K +++ C+SF G C YG +C F+H
Sbjct: 349 FAHGNQELKE---PPRHPKYKSERCRSFMMYGYCPYGLRCCFLH 389
>sp|Q9C9N3|C3H14_ARATH Zinc finger CCCH domain-containing protein 14 OS=Arabidopsis
thaliana GN=At1g66810 PE=2 SV=1
Length = 310
Score = 35.0 bits (79), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 32/57 (56%), Gaps = 6/57 (10%)
Query: 1 FAHGKEELRSTLFPTTKN-KSEAQICKSFTTGS-CIYGSKCRFIHQVMTDSALVLTI 55
FAHG +ELR P ++ + + ++C+ TG+ C YG +C F H + +++ +
Sbjct: 255 FAHGIDELR----PVIRHPRYKTEVCRMMVTGAMCPYGHRCHFRHSLTDQERMMMMM 307
>sp|Q6TQE1|ZCH18_RAT Zinc finger CCCH domain-containing protein 18 OS=Rattus norvegicus
GN=Zc3h18 PE=1 SV=1
Length = 947
Score = 34.3 bits (77), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 25 CKSFTTGSCIYGSKCRFIHQVMTDSA 50
C+ F G+C +G CRFIH + D
Sbjct: 219 CRFFMKGNCTWGMNCRFIHPGVNDKG 244
>sp|Q86VM9|ZCH18_HUMAN Zinc finger CCCH domain-containing protein 18 OS=Homo sapiens
GN=ZC3H18 PE=1 SV=2
Length = 953
Score = 34.3 bits (77), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 17/35 (48%)
Query: 25 CKSFTTGSCIYGSKCRFIHQVMTDSALVLTIQMED 59
C+ F G+C +G CRFIH + D I D
Sbjct: 224 CRFFMKGNCTWGMNCRFIHPGVNDKGNYSLITKAD 258
>sp|Q9DD48|MKRN2_SERQU Probable E3 ubiquitin-protein ligase makorin-2 OS=Seriola
quinqueradiata GN=mkrn2 PE=2 SV=1
Length = 423
Score = 34.3 bits (77), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Query: 1 FAHG--KEELRSTLFPTTKNKSEAQICKSFTTGSCIYGSKCRFIH 43
F HG +E R N + ICK + G C YG +CR+ H
Sbjct: 11 FLHGVCREGSRCLFSHDLNNSKPSTICKFYQRGVCAYGERCRYDH 55
>sp|Q0DYP5|C3H17_ORYSJ Zinc finger CCCH domain-containing protein 17 OS=Oryza sativa
subsp. japonica GN=Os02g0677700 PE=2 SV=2
Length = 435
Score = 33.9 bits (76), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 25 CKSFTTGSCIYGSKCRFIHQV-MTDSALVLT 54
C+ F G C YG KCR+ H M+DS +LT
Sbjct: 114 CRYFLAGDCSYGEKCRYPHSYSMSDSITMLT 144
>sp|Q9H000|MKRN2_HUMAN Probable E3 ubiquitin-protein ligase makorin-2 OS=Homo sapiens
GN=MKRN2 PE=2 SV=2
Length = 416
Score = 33.9 bits (76), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 35/149 (23%), Positives = 60/149 (40%), Gaps = 12/149 (8%)
Query: 1 FAHG--KEELRSTLFPTTKNKSEAQICKSFTTGSCIYGSKCRFIHQVMTDSALVLTIQME 58
F HG +E + N + ICK + G C YG++CR+ H + +A M
Sbjct: 11 FMHGVCREGSQCLFSHDLANSKPSTICKYYQKGYCAYGTRCRYDHTRPSAAAGGAVGTMA 70
Query: 59 DHSMKACVCESPVTP--VTFKPRLTNTAIKPEHTRKTTALVNKHVQSRATSTSSRDNWSP 116
HS+ + SP P VT TN+ + ++T L ++++ A +
Sbjct: 71 -HSVPSPAFHSPHPPSEVTASIVKTNSHEPGKREKRTLVLRDRNLSGMAERKT------- 122
Query: 117 QDDGIEVTLPCHPSKTPPRVKVDEYIDTV 145
Q + C + P +K Y+D +
Sbjct: 123 QPSMVSNPGSCSDPQPSPEMKPHSYLDAI 151
>sp|Q0P678|ZCH18_MOUSE Zinc finger CCCH domain-containing protein 18 OS=Mus musculus
GN=Zc3h18 PE=1 SV=1
Length = 948
Score = 33.9 bits (76), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 25 CKSFTTGSCIYGSKCRFIHQVMTDSA 50
C+ F G+C +G CRFIH + D
Sbjct: 220 CRFFMKGNCTWGMSCRFIHPGVNDKG 245
>sp|Q9UHC7|MKRN1_HUMAN E3 ubiquitin-protein ligase makorin-1 OS=Homo sapiens GN=MKRN1 PE=1
SV=3
Length = 482
Score = 33.5 bits (75), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 11/20 (55%), Positives = 14/20 (70%)
Query: 24 ICKSFTTGSCIYGSKCRFIH 43
+CK F G CIYG +CR+ H
Sbjct: 89 VCKYFQRGYCIYGDRCRYEH 108
>sp|P61129|ZC3H6_HUMAN Zinc finger CCCH domain-containing protein 6 OS=Homo sapiens
GN=ZC3H6 PE=2 SV=2
Length = 1189
Score = 33.5 bits (75), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 14/23 (60%)
Query: 23 QICKSFTTGSCIYGSKCRFIHQV 45
QICK F G CI G +C+F H
Sbjct: 276 QICKYFLEGRCIKGDQCKFDHDA 298
>sp|Q96K80|ZC3HA_HUMAN Zinc finger CCCH domain-containing protein 10 OS=Homo sapiens
GN=ZC3H10 PE=1 SV=1
Length = 434
Score = 33.1 bits (74), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 17 KNKSEAQICKSFTTGSCIYGSKCRFIH 43
K E IC+ F G C G+KC+F H
Sbjct: 132 NGKEEVPICRDFLKGDCQRGAKCKFRH 158
>sp|Q5GH76|XKR4_HUMAN XK-related protein 4 OS=Homo sapiens GN=XKR4 PE=2 SV=1
Length = 650
Score = 33.1 bits (74), Expect = 0.82, Method: Composition-based stats.
Identities = 18/74 (24%), Positives = 29/74 (39%), Gaps = 7/74 (9%)
Query: 64 ACVCESPVTPVTFKPRLTNTAIKPEHTRKTTALVNKHVQSRATSTSSRDNWSPQDDGIEV 123
+C CE P T P + + ++ ++ V R + RD P +
Sbjct: 525 SCACEDPAAAFTLPPDVATSTLRSISNNRSV------VSDRDQKFAERDGCVPVFQ-VRP 577
Query: 124 TLPCHPSKTPPRVK 137
T P PS PPR++
Sbjct: 578 TAPSTPSSRPPRIE 591
>sp|Q8R205|ZC3HA_MOUSE Zinc finger CCCH domain-containing protein 10 OS=Mus musculus
GN=Zc3h10 PE=2 SV=1
Length = 435
Score = 33.1 bits (74), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 17 KNKSEAQICKSFTTGSCIYGSKCRFIH 43
K E IC+ F G C G+KC+F H
Sbjct: 132 NGKEEVPICRDFLKGDCQRGAKCKFRH 158
>sp|Q6GLT5|MKRN1_XENLA Probable E3 ubiquitin-protein ligase makorin-1 OS=Xenopus laevis
GN=mkrn1 PE=2 SV=1
Length = 408
Score = 33.1 bits (74), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 20/46 (43%), Gaps = 2/46 (4%)
Query: 1 FAHG--KEELRSTLFPTTKNKSEAQICKSFTTGSCIYGSKCRFIHQ 44
F HG KE + A IC+ F G C YG +CR+ H
Sbjct: 43 FIHGVCKEGINCRYSHDLATSRSAMICRYFQRGCCAYGDRCRYEHN 88
>sp|P47976|CTH1_YEAST mRNA decay factor CTH1 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=CTH1 PE=1 SV=2
Length = 325
Score = 33.1 bits (74), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 4/45 (8%)
Query: 23 QICKSFTT-GSCIYGSKCRFIHQVMTDSALVLTIQMEDHSMKACV 66
++C+SFT G C YG+KC+F H + + L + ++ K C+
Sbjct: 208 ELCESFTIKGYCKYGNKCQFAHGL---NELKFKKKSNNYRTKPCI 249
>sp|Q9QXP6|MKRN1_MOUSE E3 ubiquitin-protein ligase makorin-1 OS=Mus musculus GN=Mkrn1 PE=2
SV=1
Length = 481
Score = 33.1 bits (74), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 10/20 (50%), Positives = 14/20 (70%)
Query: 24 ICKSFTTGSCIYGSKCRFIH 43
+CK F G C+YG +CR+ H
Sbjct: 89 VCKYFQRGYCVYGDRCRYEH 108
>sp|Q9ERV1|MKRN2_MOUSE Probable E3 ubiquitin-protein ligase makorin-2 OS=Mus musculus
GN=Mkrn2 PE=2 SV=2
Length = 416
Score = 32.7 bits (73), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Query: 1 FAHG--KEELRSTLFPTTKNKSEAQICKSFTTGSCIYGSKCRFIH 43
F HG +E + N + ICK + G C YG++CR+ H
Sbjct: 11 FMHGVCREGSQCLFSHDLANSKPSTICKYYQKGYCAYGARCRYDH 55
>sp|Q6P5D3|DHX57_MOUSE Putative ATP-dependent RNA helicase DHX57 OS=Mus musculus GN=Dhx57
PE=2 SV=2
Length = 1388
Score = 32.7 bits (73), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 16/21 (76%)
Query: 25 CKSFTTGSCIYGSKCRFIHQV 45
CK + G+C +GSKC+F H+V
Sbjct: 305 CKFYLKGNCKFGSKCKFKHEV 325
>sp|Q8BYK8|ZC3H6_MOUSE Zinc finger CCCH domain-containing protein 6 OS=Mus musculus
GN=Zc3h6 PE=2 SV=2
Length = 1177
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 13/23 (56%)
Query: 23 QICKSFTTGSCIYGSKCRFIHQV 45
QICK F G CI G C+F H
Sbjct: 274 QICKYFLEGRCIKGDHCKFNHDA 296
>sp|Q10MN8|C3H21_ORYSJ Putative zinc finger CCCH domain-containing protein 21 OS=Oryza
sativa subsp. japonica GN=Os03g0301500 PE=4 SV=1
Length = 457
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 9/29 (31%), Positives = 19/29 (65%)
Query: 17 KNKSEAQICKSFTTGSCIYGSKCRFIHQV 45
+ ++ ++C + G+C YG++CRF H +
Sbjct: 380 QGAAKTELCNKWERGACPYGARCRFAHGL 408
>sp|Q7F8R0|C3H14_ORYSJ Zinc finger CCCH domain-containing protein 14 OS=Oryza sativa
subsp. japonica GN=Os02g0194200 PE=2 SV=1
Length = 300
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 10/21 (47%), Positives = 16/21 (76%)
Query: 23 QICKSFTTGSCIYGSKCRFIH 43
++C++FT GSC +G +C F H
Sbjct: 269 KLCENFTKGSCTFGDRCHFAH 289
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.130 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 59,657,437
Number of Sequences: 539616
Number of extensions: 2137465
Number of successful extensions: 5298
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 52
Number of HSP's that attempted gapping in prelim test: 5121
Number of HSP's gapped (non-prelim): 233
length of query: 167
length of database: 191,569,459
effective HSP length: 109
effective length of query: 58
effective length of database: 132,751,315
effective search space: 7699576270
effective search space used: 7699576270
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)