Query 042538
Match_columns 167
No_of_seqs 111 out of 356
Neff 3.3
Searched_HMMs 29240
Date Mon Mar 25 12:13:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042538.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042538hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1m9o_A Tristetraproline; Cys3H 99.2 1.5E-12 5.2E-17 89.2 1.0 44 1-47 32-76 (77)
2 1m9o_A Tristetraproline; Cys3H 98.7 5.3E-09 1.8E-13 71.4 3.0 36 13-48 3-39 (77)
3 2d9m_A Zinc finger CCCH-type d 98.4 3.6E-08 1.2E-12 69.9 1.1 29 20-48 18-46 (69)
4 2cqe_A KIAA1064 protein; CCCH 97.7 1.5E-05 5.2E-10 58.2 2.3 25 20-44 11-35 (98)
5 2cqe_A KIAA1064 protein; CCCH 97.6 2.6E-05 8.9E-10 56.9 2.0 28 22-49 36-64 (98)
6 2fc6_A Nuclear, target of EGR1 97.4 3.4E-05 1.1E-09 52.0 0.6 28 19-46 17-45 (50)
7 2d9n_A Cleavage and polyadenyl 97.2 8.6E-05 3E-09 51.6 1.4 29 19-47 7-35 (77)
8 3d2q_A Muscleblind-like protei 97.1 0.00017 6E-09 49.3 2.2 40 1-46 26-65 (70)
9 2rhk_C Cleavage and polyadenyl 96.8 0.00028 9.4E-09 48.9 0.5 29 19-47 13-41 (72)
10 2e5s_A Otthump00000018578; ZF- 96.5 0.00098 3.3E-08 48.8 2.1 40 1-46 40-79 (98)
11 2d9n_A Cleavage and polyadenyl 96.4 0.0013 4.5E-08 45.5 1.8 26 21-47 37-63 (77)
12 3d2q_A Muscleblind-like protei 95.9 0.0022 7.4E-08 43.8 1.2 28 20-47 4-32 (70)
13 2rhk_C Cleavage and polyadenyl 95.6 0.0043 1.5E-07 42.8 1.5 26 21-47 43-69 (72)
14 2e5s_A Otthump00000018578; ZF- 94.5 0.0042 1.4E-07 45.4 -1.0 29 19-47 17-46 (98)
15 3d2n_A Muscleblind-like protei 94.2 0.021 7.3E-07 40.6 2.2 28 20-47 7-35 (83)
16 2rpp_A Muscleblind-like protei 92.8 0.032 1.1E-06 40.4 1.0 28 20-47 15-43 (89)
17 3d2n_A Muscleblind-like protei 88.9 0.13 4.4E-06 36.5 1.1 26 20-46 41-66 (83)
18 2d9m_A Zinc finger CCCH-type d 86.2 0.11 3.9E-06 36.5 -0.5 26 1-28 39-64 (69)
19 3u1l_A PRE-mRNA-splicing facto 85.7 0.16 5.5E-06 41.9 0.1 28 23-50 71-98 (240)
20 2rpp_A Muscleblind-like protei 80.8 0.69 2.4E-05 33.3 1.8 25 21-46 50-74 (89)
21 3u9g_A Zinc finger CCCH-type a 47.7 7.6 0.00026 32.6 1.8 37 21-58 174-210 (229)
22 3u9g_A Zinc finger CCCH-type a 38.1 15 0.00051 30.9 2.1 26 23-48 90-119 (229)
23 3v33_A Ribonuclease ZC3H12A; r 35.1 8 0.00027 32.1 0.0 14 30-43 192-205 (223)
No 1
>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A
Probab=99.22 E-value=1.5e-12 Score=89.15 Aligned_cols=44 Identities=43% Similarity=0.879 Sum_probs=10.4
Q ss_pred CCCCcccccCCCCCCCCCcccccccccc-cccccCCCCCCeecCCCCC
Q 042538 1 FAHGKEELRSTLFPTTKNKSEAQICKSF-TTGSCIYGSKCRFIHQVMT 47 (167)
Q Consensus 1 FAHG~eELR~~~~P~~knKYKTklCk~F-~tG~CPYG~RC~FiH~~~~ 47 (167)
|||+.+|||... .+++|||++|+.| ..|.|+||.+|+|+|+..+
T Consensus 32 f~H~~~e~~~~~---~~~~~k~~~C~~f~~~G~C~~G~~C~f~H~~~e 76 (77)
T 1m9o_A 32 FAHGLGELRQAN---RHPKYKTELCHKFKLQGRCPYGSRCHFIHNPTE 76 (77)
T ss_dssp SCSSSCCGGGTC------------------------------------
T ss_pred CCCCChhhcccc---ccccccCCcccchhhCcCCCCcCcCCCCCCCCC
Confidence 899999999764 1335999999999 8999999999999998765
No 2
>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A
Probab=98.72 E-value=5.3e-09 Score=71.41 Aligned_cols=36 Identities=31% Similarity=0.790 Sum_probs=30.7
Q ss_pred CCCCCCcccccccccc-cccccCCCCCCeecCCCCCh
Q 042538 13 FPTTKNKSEAQICKSF-TTGSCIYGSKCRFIHQVMTD 48 (167)
Q Consensus 13 ~P~~knKYKTklCk~F-~tG~CPYG~RC~FiH~~~~~ 48 (167)
+|..+.+|||++|+.| .+|.|+||++|+|+|+..+.
T Consensus 3 ~~~~~~~~kt~~C~~f~~~G~C~~G~~C~f~H~~~e~ 39 (77)
T 1m9o_A 3 HMTTSSRYKTELCRTYSESGRCRYGAKCQFAHGLGEL 39 (77)
T ss_dssp -CCCSSCCCSCCCSGGGGTSCCTTTTTCSSCSSSCCG
T ss_pred CCCCCCCccchhCHHhhhCCCcCCCCCccCCCCChhh
Confidence 3445678999999999 79999999999999998753
No 3
>2d9m_A Zinc finger CCCH-type domain containing protein 7A; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.45 E-value=3.6e-08 Score=69.94 Aligned_cols=29 Identities=28% Similarity=0.652 Sum_probs=25.8
Q ss_pred ccccccccccccccCCCCCCeecCCCCCh
Q 042538 20 SEAQICKSFTTGSCIYGSKCRFIHQVMTD 48 (167)
Q Consensus 20 YKTklCk~F~tG~CPYG~RC~FiH~~~~~ 48 (167)
.|++||++|..|.|+||++|+|+|+..+-
T Consensus 18 ~k~~LC~~~~~G~C~~G~~C~FAHG~~EL 46 (69)
T 2d9m_A 18 GYFSICDRYMNGTCPEGNSCKFAHGNAEL 46 (69)
T ss_dssp SCCSBCHHHHHSCCSSCSSCSSBSSHHHH
T ss_pred CCcccCcccCcCCCCCCCccCCcCCHHHH
Confidence 46699999988999999999999998754
No 4
>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1
Probab=97.68 E-value=1.5e-05 Score=58.17 Aligned_cols=25 Identities=28% Similarity=0.820 Sum_probs=16.0
Q ss_pred ccccccccccccccCCCCCCeecCC
Q 042538 20 SEAQICKSFTTGSCIYGSKCRFIHQ 44 (167)
Q Consensus 20 YKTklCk~F~tG~CPYG~RC~FiH~ 44 (167)
+|+.+|+.|..|.|.||++|.|+|+
T Consensus 11 ~k~~lC~~f~~G~C~~G~~C~f~H~ 35 (98)
T 2cqe_A 11 KKRELCKFYITGFCARAENCPYMHG 35 (98)
T ss_dssp CCCSBCTTTTTTCCSCSTTCSSBSS
T ss_pred CCCccCcccccCcCCCCCCCCCCCC
Confidence 5666666665566666666666665
No 5
>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1
Probab=97.55 E-value=2.6e-05 Score=56.94 Aligned_cols=28 Identities=43% Similarity=0.889 Sum_probs=24.9
Q ss_pred ccccccc-cccccCCCCCCeecCCCCChh
Q 042538 22 AQICKSF-TTGSCIYGSKCRFIHQVMTDS 49 (167)
Q Consensus 22 TklCk~F-~tG~CPYG~RC~FiH~~~~~a 49 (167)
+.+|+.| ..|.|+||.+|+|+|......
T Consensus 36 ~~~C~~f~~~G~C~~G~~C~f~H~~~~~~ 64 (98)
T 2cqe_A 36 DFPCKLYHTTGNCINGDDCMFSHDPLTEE 64 (98)
T ss_dssp SSBCSHHHHTSCCSSCTTCSSBCCCCCHH
T ss_pred CCcCcCcccCCcCCCCCCCcccCCCCccc
Confidence 6899999 899999999999999976543
No 6
>2fc6_A Nuclear, target of EGR1, member 1; structure genomics, ZF-CCCH domain, member 1(nuclear), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.66.1.1
Probab=97.38 E-value=3.4e-05 Score=51.99 Aligned_cols=28 Identities=29% Similarity=0.686 Sum_probs=26.2
Q ss_pred cccccccccc-cccccCCCCCCeecCCCC
Q 042538 19 KSEAQICKSF-TTGSCIYGSKCRFIHQVM 46 (167)
Q Consensus 19 KYKTklCk~F-~tG~CPYG~RC~FiH~~~ 46 (167)
..++.+|++| +.|.||+|.+|.|.|+.+
T Consensus 17 ~~~~~iC~~FSayGwCp~G~~Cp~SHDiD 45 (50)
T 2fc6_A 17 PHPTSICDNFSAYGWCPLGPQCPQSHDIS 45 (50)
T ss_dssp CCCSCBCSHHHHTCCCTTGGGCSSBCCCC
T ss_pred ccccchhhhccccccCCCCCCCCccccCC
Confidence 3689999999 999999999999999987
No 7
>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.23 E-value=8.6e-05 Score=51.56 Aligned_cols=29 Identities=28% Similarity=0.738 Sum_probs=26.0
Q ss_pred cccccccccccccccCCCCCCeecCCCCC
Q 042538 19 KSEAQICKSFTTGSCIYGSKCRFIHQVMT 47 (167)
Q Consensus 19 KYKTklCk~F~tG~CPYG~RC~FiH~~~~ 47 (167)
.+|+++|+.|..|.|.+|+.|.|+|+...
T Consensus 7 ~~k~~~C~~fl~G~C~~G~~C~fsH~~~~ 35 (77)
T 2d9n_A 7 GEKTVVCKHWLRGLCKKGDQCEFLHEYDM 35 (77)
T ss_dssp CCTTSBCHHHHTTCCSCTTSSSSBCSCCT
T ss_pred CCcceeCHhHccCcCCCCCCCCCcccccc
Confidence 38999999996699999999999999864
No 8
>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A
Probab=97.14 E-value=0.00017 Score=49.28 Aligned_cols=40 Identities=25% Similarity=0.617 Sum_probs=26.0
Q ss_pred CCCCcccccCCCCCCCCCcccccccccccccccCCCCCCeecCCCC
Q 042538 1 FAHGKEELRSTLFPTTKNKSEAQICKSFTTGSCIYGSKCRFIHQVM 46 (167)
Q Consensus 1 FAHG~eELR~~~~P~~knKYKTklCk~F~tG~CPYG~RC~FiH~~~ 46 (167)
|||..+++.... ...++.+|+.|..|.|..| .|.|+|...
T Consensus 26 f~H~~~~~~~~~-----~~~~~~vC~~flkG~C~r~-~C~y~H~~~ 65 (70)
T 3d2q_A 26 FAHPADSTMIDT-----NDNTVTVCMDYIKGRCSRE-KCKYFHPPA 65 (70)
T ss_dssp SBCCCTTSCCBT-----TTTEEEBCHHHHTTCCCCT-TCCSBCCCH
T ss_pred CccCcccccccc-----cCCcceeccccCcCCCCCC-CcCeeCCHH
Confidence 667666654321 1256777777766777777 777777653
No 9
>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens}
Probab=96.75 E-value=0.00028 Score=48.89 Aligned_cols=29 Identities=28% Similarity=0.738 Sum_probs=25.4
Q ss_pred cccccccccccccccCCCCCCeecCCCCC
Q 042538 19 KSEAQICKSFTTGSCIYGSKCRFIHQVMT 47 (167)
Q Consensus 19 KYKTklCk~F~tG~CPYG~RC~FiH~~~~ 47 (167)
..|+++|+.|..|.|.+|+.|.|+|+...
T Consensus 13 ~~k~~vCk~fl~G~C~~G~~C~fsH~~~~ 41 (72)
T 2rhk_C 13 GEKTVVCKHWLRGLCKKGDQCEFLHEYDM 41 (72)
T ss_dssp CCCCSBCHHHHTTCCCCGGGSSSBCSCCT
T ss_pred CCcCeeCHHHhcCCCCCCCCCCCcccccc
Confidence 36889999996699999999999999753
No 10
>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.52 E-value=0.00098 Score=48.79 Aligned_cols=40 Identities=23% Similarity=0.598 Sum_probs=28.7
Q ss_pred CCCCcccccCCCCCCCCCcccccccccccccccCCCCCCeecCCCC
Q 042538 1 FAHGKEELRSTLFPTTKNKSEAQICKSFTTGSCIYGSKCRFIHQVM 46 (167)
Q Consensus 1 FAHG~eELR~~~~P~~knKYKTklCk~F~tG~CPYG~RC~FiH~~~ 46 (167)
|+|..++++.... ..++.+|..|..|.|.+| .|.|.|...
T Consensus 40 FsH~~~~~~~~~~-----~~~~~vC~~flkG~C~r~-~C~y~H~~~ 79 (98)
T 2e5s_A 40 FAHPADSTMIDTS-----DNTVTVCMDYIKGRCMRE-KCKYFHPPA 79 (98)
T ss_dssp SBCCSSCCSCCTT-----TCEEEBCHHHHHTCCCCT-TCCSBCCCH
T ss_pred CcCCchhcccccc-----CCccccchhhccCCCCCC-CcCccCChH
Confidence 6777776653211 257778888877888888 888888775
No 11
>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.36 E-value=0.0013 Score=45.55 Aligned_cols=26 Identities=23% Similarity=0.571 Sum_probs=22.2
Q ss_pred cccccccc-cccccCCCCCCeecCCCCC
Q 042538 21 EAQICKSF-TTGSCIYGSKCRFIHQVMT 47 (167)
Q Consensus 21 KTklCk~F-~tG~CPYG~RC~FiH~~~~ 47 (167)
++.+|+.| ..|.|. |++|.|+|....
T Consensus 37 ~~~~C~~f~~~G~C~-~~~C~f~H~~~~ 63 (77)
T 2d9n_A 37 KMPECYFYSKFGECS-NKECPFLHIDPE 63 (77)
T ss_dssp TSCBCHHHHHTCCCC-CSSCSSBCCCTT
T ss_pred cCCCCcccCCCCccC-CCCeeccCCCcc
Confidence 45689999 559999 999999999864
No 12
>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A
Probab=95.92 E-value=0.0022 Score=43.78 Aligned_cols=28 Identities=29% Similarity=0.860 Sum_probs=24.9
Q ss_pred ccccccccccccccCCCC-CCeecCCCCC
Q 042538 20 SEAQICKSFTTGSCIYGS-KCRFIHQVMT 47 (167)
Q Consensus 20 YKTklCk~F~tG~CPYG~-RC~FiH~~~~ 47 (167)
.|..+|+.|..|.|..|+ .|.|+|+...
T Consensus 4 ~k~~vC~~f~~G~C~rg~~~C~f~H~~~~ 32 (70)
T 3d2q_A 4 DRLEVCREYQRGNCNRGENDCRFAHPADS 32 (70)
T ss_dssp CEEEBCHHHHTTCCSSCTTTCSSBCCCTT
T ss_pred ccchhCHHHhcCCCCCCCCCCCCccCccc
Confidence 467899999999999999 6999999864
No 13
>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens}
Probab=95.56 E-value=0.0043 Score=42.83 Aligned_cols=26 Identities=23% Similarity=0.600 Sum_probs=22.6
Q ss_pred cccccccccc-cccCCCCCCeecCCCCC
Q 042538 21 EAQICKSFTT-GSCIYGSKCRFIHQVMT 47 (167)
Q Consensus 21 KTklCk~F~t-G~CPYG~RC~FiH~~~~ 47 (167)
++.+|+.|.. |.|.+ ++|.|.|...+
T Consensus 43 ~~~~C~~f~~~G~C~~-~~C~y~H~~p~ 69 (72)
T 2rhk_C 43 KMSECYFYSKFGECSN-KECPFLHIDPE 69 (72)
T ss_dssp SCCBCHHHHHHSCCSB-TTCCSBCCCCC
T ss_pred cCCcccccCCCCCCCC-CCeeccCCCcc
Confidence 5679999954 99999 99999998764
No 14
>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.49 E-value=0.0042 Score=45.40 Aligned_cols=29 Identities=31% Similarity=0.886 Sum_probs=25.8
Q ss_pred cccccccccccccccCCCC-CCeecCCCCC
Q 042538 19 KSEAQICKSFTTGSCIYGS-KCRFIHQVMT 47 (167)
Q Consensus 19 KYKTklCk~F~tG~CPYG~-RC~FiH~~~~ 47 (167)
..|..+|+.|..|.|..|+ .|.|+|+...
T Consensus 17 ~~k~~VCr~FlrG~C~rgd~~C~FsH~~~~ 46 (98)
T 2e5s_A 17 TDKLEVCREFQRGNCARGETDCRFAHPADS 46 (98)
T ss_dssp SSEEEBCSHHHHTCCSSHHHHCSSBCCSSC
T ss_pred hhhhhhhHHHhcCcCCCCCCCCCCcCCchh
Confidence 3688999999779999999 8999999864
No 15
>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens}
Probab=94.24 E-value=0.021 Score=40.63 Aligned_cols=28 Identities=25% Similarity=0.762 Sum_probs=24.9
Q ss_pred ccccccccccccccCCCC-CCeecCCCCC
Q 042538 20 SEAQICKSFTTGSCIYGS-KCRFIHQVMT 47 (167)
Q Consensus 20 YKTklCk~F~tG~CPYG~-RC~FiH~~~~ 47 (167)
.|..+|+.|..|.|.-|+ .|.|+|+...
T Consensus 7 ~~~~VCr~FlrG~C~r~d~~C~f~H~~~~ 35 (83)
T 3d2n_A 7 LTLEVCREFQRGTCSRPDTECKFAHPSKS 35 (83)
T ss_dssp GEEEBCTTGGGTCCCSCTTTCSSBCCCTT
T ss_pred ccchhcHHHhcCCCCCCCCCCCCcCCCcc
Confidence 577899999779999996 9999999864
No 16
>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens}
Probab=92.75 E-value=0.032 Score=40.40 Aligned_cols=28 Identities=25% Similarity=0.776 Sum_probs=25.1
Q ss_pred ccccccccccccccCCCC-CCeecCCCCC
Q 042538 20 SEAQICKSFTTGSCIYGS-KCRFIHQVMT 47 (167)
Q Consensus 20 YKTklCk~F~tG~CPYG~-RC~FiH~~~~ 47 (167)
-+..+|+.|..|.|.-|+ .|.|+|+...
T Consensus 15 ~~~~VCrdFlrG~C~r~d~~CrfsH~~~~ 43 (89)
T 2rpp_A 15 LTLEVCRQFQRGTCSRSDEECKFAHPPKS 43 (89)
T ss_dssp SEECBCHHHHHTCCCCCTTTSSSBCCCSS
T ss_pred chhhhchHHhcCCCCCCCCCCCCcCCCcc
Confidence 467899999779999998 9999999875
No 17
>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens}
Probab=88.89 E-value=0.13 Score=36.54 Aligned_cols=26 Identities=19% Similarity=0.525 Sum_probs=23.4
Q ss_pred ccccccccccccccCCCCCCeecCCCC
Q 042538 20 SEAQICKSFTTGSCIYGSKCRFIHQVM 46 (167)
Q Consensus 20 YKTklCk~F~tG~CPYG~RC~FiH~~~ 46 (167)
-+...|..|..|.|.-+ .|.|.|+..
T Consensus 41 ~~~~vC~dflkG~C~r~-~C~y~H~~~ 66 (83)
T 3d2n_A 41 GRVIACFDSLKGRCSRE-NCKYLHPPP 66 (83)
T ss_dssp TEEECCHHHHTTCCCCS-SCSSCCCCH
T ss_pred CceeehhHhhhccccCC-CcceeCChH
Confidence 46789999988999999 899999986
No 18
>2d9m_A Zinc finger CCCH-type domain containing protein 7A; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=86.22 E-value=0.11 Score=36.51 Aligned_cols=26 Identities=27% Similarity=0.348 Sum_probs=17.2
Q ss_pred CCCCcccccCCCCCCCCCcccccccccc
Q 042538 1 FAHGKEELRSTLFPTTKNKSEAQICKSF 28 (167)
Q Consensus 1 FAHG~eELR~~~~P~~knKYKTklCk~F 28 (167)
||||.+|||..... ..-.|+++|+-.
T Consensus 39 FAHG~~ELr~~~~R--~~~~k~k~~~Ar 64 (69)
T 2d9m_A 39 FAHGNAELHEWEER--RDALKMKLNKAS 64 (69)
T ss_dssp SBSSHHHHHHHHHH--HHHHTTTCCSCC
T ss_pred CcCCHHHHhhHHHH--HHHHHHHHHHHh
Confidence 99999999974310 122567777654
No 19
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=85.66 E-value=0.16 Score=41.89 Aligned_cols=28 Identities=29% Similarity=0.819 Sum_probs=24.1
Q ss_pred cccccccccccCCCCCCeecCCCCChhH
Q 042538 23 QICKSFTTGSCIYGSKCRFIHQVMTDSA 50 (167)
Q Consensus 23 klCk~F~tG~CPYG~RC~FiH~~~~~aa 50 (167)
.+|--|..|.|.+|..|.|+|...+...
T Consensus 71 ~~C~ffakG~C~~G~~C~y~H~lPt~~d 98 (240)
T 3u1l_A 71 FFCLFFAKGMCCLGPKCEYLHHIPDEED 98 (240)
T ss_dssp SBCHHHHTTCCSCGGGCSSBBSCCCHHH
T ss_pred eEcCccccCCCCCCCCCCccCCCCCccc
Confidence 4899997799999999999999877543
No 20
>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens}
Probab=80.83 E-value=0.69 Score=33.29 Aligned_cols=25 Identities=20% Similarity=0.565 Sum_probs=22.9
Q ss_pred cccccccccccccCCCCCCeecCCCC
Q 042538 21 EAQICKSFTTGSCIYGSKCRFIHQVM 46 (167)
Q Consensus 21 KTklCk~F~tG~CPYG~RC~FiH~~~ 46 (167)
+...|..|..|.|.-+ .|.|+|+..
T Consensus 50 ~~~vC~dflkG~C~r~-~Cky~H~~~ 74 (89)
T 2rpp_A 50 RVIACFDSLKGRCSRE-NCKYLHPPT 74 (89)
T ss_dssp BEEBCHHHHHTCCCCT-TCCSBCCCH
T ss_pred ceeeehhhhhCcCCCC-CcceecCHH
Confidence 6789999988999999 899999975
No 21
>3u9g_A Zinc finger CCCH-type antiviral protein 1; zinc finger protein; 1.80A {Rattus norvegicus}
Probab=47.65 E-value=7.6 Score=32.63 Aligned_cols=37 Identities=30% Similarity=0.634 Sum_probs=25.3
Q ss_pred cccccccccccccCCCCCCeecCCCCChhHHHhhcccc
Q 042538 21 EAQICKSFTTGSCIYGSKCRFIHQVMTDSALVLTIQME 58 (167)
Q Consensus 21 KTklCk~F~tG~CPYG~RC~FiH~~~~~aa~~~~~q~e 58 (167)
|-.+|+.|..|.|.| ..|.=.|.-........-+.++
T Consensus 174 kLHIC~~Fl~G~C~f-~~CkRsH~~~~~~~l~~L~~~G 210 (229)
T 3u9g_A 174 RLHICEHFTRGNCSY-LNCLRSHNLMDRKVLTIMREHG 210 (229)
T ss_dssp SBCSCHHHHTTCCCC-SSCSSCCCTTSHHHHHHHHHHT
T ss_pred ceeccchhhcCCcCC-CCccCccCccCchHHHHHHHcC
Confidence 345888888888988 7898888886654443323333
No 22
>3u9g_A Zinc finger CCCH-type antiviral protein 1; zinc finger protein; 1.80A {Rattus norvegicus}
Probab=38.07 E-value=15 Score=30.89 Aligned_cols=26 Identities=31% Similarity=0.878 Sum_probs=21.3
Q ss_pred cccccccccccCCC----CCCeecCCCCCh
Q 042538 23 QICKSFTTGSCIYG----SKCRFIHQVMTD 48 (167)
Q Consensus 23 klCk~F~tG~CPYG----~RC~FiH~~~~~ 48 (167)
.+||.|..|.|.|. ..|.|.|+..+.
T Consensus 90 HLCK~~l~G~C~~~~~~~~~Ck~SHdi~s~ 119 (229)
T 3u9g_A 90 HLCKLNLLGRCHYAQSQRNLCKYSHDVLSE 119 (229)
T ss_dssp CCCHHHHTTCCGGGTCCSSCCSSCSCTTCH
T ss_pred eechhhhcCcCCcccCCCCCcccccccCch
Confidence 58999977999554 679999999865
No 23
>3v33_A Ribonuclease ZC3H12A; rossmann-like sandwich fold, RNAse, cytoplastic, hydrolase; 2.00A {Homo sapiens}
Probab=35.15 E-value=8 Score=32.10 Aligned_cols=14 Identities=36% Similarity=0.845 Sum_probs=0.0
Q ss_pred ccccCCCCCCeecC
Q 042538 30 TGSCIYGSKCRFIH 43 (167)
Q Consensus 30 tG~CPYG~RC~FiH 43 (167)
.-.||||.||.|=+
T Consensus 192 ~~~~~~~~~~~~~~ 205 (223)
T 3v33_A 192 KQPCPYGRKCTYGI 205 (223)
T ss_dssp --------------
T ss_pred CCCCCCCcccccCC
Confidence 33688888887754
Done!