Query 042541
Match_columns 695
No_of_seqs 437 out of 3849
Neff 9.6
Searched_HMMs 46136
Date Fri Mar 29 07:10:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042541.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042541hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 4.6E-74 1E-78 649.7 44.1 650 9-686 3-679 (889)
2 PLN03210 Resistant to P. syrin 100.0 3.8E-50 8.3E-55 480.1 37.3 481 164-694 182-700 (1153)
3 PF00931 NB-ARC: NB-ARC domain 100.0 2.3E-41 4.9E-46 347.8 15.2 271 171-445 1-285 (287)
4 PRK04841 transcriptional regul 99.6 8.7E-14 1.9E-18 166.3 28.0 297 161-498 9-335 (903)
5 COG2909 MalT ATP-dependent tra 99.5 1.7E-12 3.7E-17 141.2 24.9 326 161-533 14-371 (894)
6 KOG0617 Ras suppressor protein 99.4 1.2E-14 2.5E-19 127.7 -4.0 156 528-695 34-192 (264)
7 TIGR02928 orc1/cdc6 family rep 99.3 1E-09 2.2E-14 116.8 27.7 288 165-465 14-351 (365)
8 PRK00411 cdc6 cell division co 99.3 8.9E-10 1.9E-14 118.5 27.2 286 164-465 28-359 (394)
9 PLN00113 leucine-rich repeat r 99.3 8.3E-12 1.8E-16 150.3 11.6 142 548-693 91-254 (968)
10 PLN00113 leucine-rich repeat r 99.2 1.7E-11 3.7E-16 147.6 9.7 139 548-693 186-326 (968)
11 PF01637 Arch_ATPase: Archaeal 99.2 5E-11 1.1E-15 118.4 11.2 189 168-363 1-233 (234)
12 TIGR03015 pepcterm_ATPase puta 99.2 1.3E-09 2.8E-14 110.8 21.0 188 176-368 29-242 (269)
13 TIGR00635 ruvB Holliday juncti 99.2 1.8E-09 3.8E-14 111.8 20.1 264 167-463 5-288 (305)
14 KOG0617 Ras suppressor protein 99.2 1.2E-12 2.6E-17 115.1 -3.2 138 547-695 30-169 (264)
15 PRK00080 ruvB Holliday junctio 99.1 4E-09 8.6E-14 110.0 20.1 272 162-463 21-309 (328)
16 PF05659 RPW8: Arabidopsis bro 99.1 6.3E-09 1.4E-13 92.7 16.1 138 1-138 1-140 (147)
17 COG3903 Predicted ATPase [Gene 99.1 6.9E-10 1.5E-14 112.4 11.1 289 187-497 14-316 (414)
18 PTZ00112 origin recognition co 99.0 5.4E-08 1.2E-12 107.5 23.1 286 164-463 753-1085(1164)
19 KOG0444 Cytoskeletal regulator 99.0 1.9E-11 4E-16 127.7 -3.3 136 549-694 196-334 (1255)
20 KOG0444 Cytoskeletal regulator 99.0 2E-11 4.4E-16 127.4 -3.1 130 549-686 54-184 (1255)
21 PLN03210 Resistant to P. syrin 99.0 2.3E-09 5.1E-14 129.7 13.4 59 527-585 634-692 (1153)
22 PF05729 NACHT: NACHT domain 99.0 6.7E-09 1.4E-13 97.0 12.2 136 188-332 1-163 (166)
23 PTZ00202 tuzin; Provisional 98.9 3.7E-06 8E-11 86.7 30.0 163 158-331 254-433 (550)
24 COG3899 Predicted ATPase [Gene 98.9 1.4E-07 3E-12 109.3 22.1 306 168-493 2-384 (849)
25 KOG0472 Leucine-rich repeat pr 98.8 1.3E-09 2.8E-14 108.8 1.5 122 561-693 422-544 (565)
26 KOG4194 Membrane glycoprotein 98.8 1.1E-09 2.4E-14 114.0 -0.6 139 547-691 290-431 (873)
27 PRK13342 recombination factor 98.8 1.1E-07 2.5E-12 102.1 14.7 174 165-365 11-197 (413)
28 PF14580 LRR_9: Leucine-rich r 98.7 9.9E-09 2.1E-13 94.9 4.7 126 548-684 17-149 (175)
29 PRK12402 replication factor C 98.7 3.9E-07 8.4E-12 95.9 17.4 191 165-363 14-225 (337)
30 PRK07003 DNA polymerase III su 98.7 1.4E-06 2.9E-11 96.4 21.2 189 165-364 15-221 (830)
31 KOG0472 Leucine-rich repeat pr 98.7 7.1E-10 1.5E-14 110.5 -3.8 117 561-690 193-311 (565)
32 KOG4194 Membrane glycoprotein 98.7 1.2E-08 2.5E-13 106.6 4.5 151 527-684 173-326 (873)
33 PF05496 RuvB_N: Holliday junc 98.7 3.8E-07 8.2E-12 86.2 13.9 171 163-368 21-225 (233)
34 COG2256 MGS1 ATPase related to 98.7 1.7E-07 3.7E-12 94.7 12.2 207 177-410 38-266 (436)
35 PRK14961 DNA polymerase III su 98.6 1.5E-06 3.2E-11 91.7 18.0 188 165-362 15-218 (363)
36 COG1474 CDC6 Cdc6-related prot 98.6 2.7E-06 5.9E-11 88.8 19.5 198 165-365 16-239 (366)
37 PRK14949 DNA polymerase III su 98.6 9.5E-07 2.1E-11 99.4 16.6 188 165-364 15-220 (944)
38 PF13401 AAA_22: AAA domain; P 98.6 1.1E-07 2.4E-12 84.9 7.5 116 187-306 4-126 (131)
39 PRK06893 DNA replication initi 98.6 1.1E-06 2.4E-11 86.4 15.0 146 186-365 38-204 (229)
40 PLN03025 replication factor C 98.6 1.8E-06 4E-11 89.5 17.1 176 164-361 11-197 (319)
41 PRK00440 rfc replication facto 98.6 3E-06 6.5E-11 88.4 18.6 173 166-362 17-201 (319)
42 PRK12323 DNA polymerase III su 98.6 1.3E-06 2.8E-11 95.3 15.9 189 165-364 15-225 (700)
43 TIGR03420 DnaA_homol_Hda DnaA 98.6 1.5E-06 3.2E-11 85.7 15.3 161 172-366 23-203 (226)
44 cd00009 AAA The AAA+ (ATPases 98.5 6.3E-07 1.4E-11 81.5 11.1 121 169-307 1-131 (151)
45 PRK14960 DNA polymerase III su 98.5 2.2E-06 4.8E-11 93.7 16.1 169 165-362 14-217 (702)
46 PLN03150 hypothetical protein; 98.5 1.7E-07 3.8E-12 105.8 8.0 110 576-692 420-532 (623)
47 PF13855 LRR_8: Leucine rich r 98.5 9.3E-08 2E-12 72.4 3.7 56 602-661 2-59 (61)
48 PRK14963 DNA polymerase III su 98.5 4E-06 8.7E-11 91.4 17.6 189 166-362 14-215 (504)
49 PF14580 LRR_9: Leucine-rich r 98.5 1.5E-07 3.3E-12 87.0 5.7 104 573-686 18-124 (175)
50 PRK14956 DNA polymerase III su 98.5 2.2E-06 4.9E-11 91.0 14.8 190 165-361 17-219 (484)
51 PRK07471 DNA polymerase III su 98.5 7.5E-06 1.6E-10 85.7 18.6 195 161-364 14-238 (365)
52 PRK09112 DNA polymerase III su 98.5 4E-06 8.6E-11 87.3 16.2 193 161-364 18-240 (351)
53 PF13173 AAA_14: AAA domain 98.5 7.4E-07 1.6E-11 79.1 9.3 113 187-324 2-127 (128)
54 PRK15387 E3 ubiquitin-protein 98.5 1.7E-07 3.8E-12 105.9 6.5 145 527-692 302-462 (788)
55 PLN03150 hypothetical protein; 98.5 1.7E-07 3.6E-12 105.9 6.3 89 602-694 419-509 (623)
56 PF13191 AAA_16: AAA ATPase do 98.5 2.2E-07 4.9E-12 88.4 6.2 73 168-243 2-82 (185)
57 KOG0532 Leucine-rich repeat (L 98.5 1.7E-08 3.6E-13 105.3 -1.7 132 549-694 120-252 (722)
58 KOG1259 Nischarin, modulator o 98.5 1.9E-08 4E-13 96.8 -1.3 131 549-693 283-416 (490)
59 PRK07994 DNA polymerase III su 98.5 4.4E-06 9.6E-11 92.7 16.9 188 165-364 15-220 (647)
60 PRK08691 DNA polymerase III su 98.5 4.4E-06 9.5E-11 92.3 16.4 170 165-363 15-219 (709)
61 PRK04195 replication factor C 98.4 2.2E-05 4.7E-10 86.3 21.9 175 164-368 12-206 (482)
62 PRK05564 DNA polymerase III su 98.4 9E-06 2E-10 84.2 17.2 169 167-363 5-189 (313)
63 PRK08727 hypothetical protein; 98.4 8.5E-06 1.9E-10 80.3 16.1 161 167-361 21-201 (233)
64 PRK14957 DNA polymerase III su 98.4 6.9E-06 1.5E-10 89.8 16.6 172 166-365 16-222 (546)
65 PRK15370 E3 ubiquitin-protein 98.4 8.1E-07 1.7E-11 101.1 9.8 150 528-694 221-385 (754)
66 PRK14958 DNA polymerase III su 98.4 5.5E-06 1.2E-10 90.6 15.9 175 165-363 15-219 (509)
67 PRK07940 DNA polymerase III su 98.4 7.8E-06 1.7E-10 86.3 16.4 165 167-364 6-213 (394)
68 PF14516 AAA_35: AAA-like doma 98.4 0.0002 4.3E-09 74.5 26.5 202 158-371 3-246 (331)
69 TIGR00678 holB DNA polymerase 98.4 1.2E-05 2.7E-10 76.6 16.1 152 177-360 3-187 (188)
70 PRK13341 recombination factor 98.4 3.6E-06 7.8E-11 95.3 14.3 170 164-359 26-212 (725)
71 PRK14964 DNA polymerase III su 98.4 9.7E-06 2.1E-10 87.3 16.4 174 165-362 12-215 (491)
72 KOG2028 ATPase related to the 98.4 4.4E-06 9.5E-11 83.0 12.5 170 167-359 139-331 (554)
73 PRK14962 DNA polymerase III su 98.4 1.2E-05 2.7E-10 86.9 16.8 178 165-367 13-222 (472)
74 PRK06645 DNA polymerase III su 98.4 6E-06 1.3E-10 89.6 14.4 188 165-361 20-226 (507)
75 KOG0618 Serine/threonine phosp 98.4 4E-08 8.7E-13 108.2 -2.4 128 549-687 358-488 (1081)
76 PF13855 LRR_8: Leucine rich r 98.3 4.4E-07 9.5E-12 68.7 3.5 59 623-686 1-60 (61)
77 PRK14969 DNA polymerase III su 98.3 2.1E-05 4.5E-10 86.7 18.0 167 166-361 16-217 (527)
78 PRK14951 DNA polymerase III su 98.3 1.7E-05 3.6E-10 88.0 17.0 193 165-364 15-225 (618)
79 cd01128 rho_factor Transcripti 98.3 1.6E-06 3.4E-11 85.5 7.6 95 185-281 14-114 (249)
80 PRK08084 DNA replication initi 98.3 2.5E-05 5.4E-10 77.1 16.1 166 165-364 22-209 (235)
81 PRK15370 E3 ubiquitin-protein 98.3 1.1E-06 2.4E-11 100.0 7.3 144 527-694 199-343 (754)
82 cd00116 LRR_RI Leucine-rich re 98.3 3.8E-07 8.3E-12 95.1 3.2 161 526-686 80-261 (319)
83 PRK15387 E3 ubiquitin-protein 98.3 1.7E-06 3.7E-11 98.0 8.4 33 551-587 283-315 (788)
84 PRK05896 DNA polymerase III su 98.3 1.7E-05 3.7E-10 86.8 15.8 191 165-366 15-223 (605)
85 TIGR02397 dnaX_nterm DNA polym 98.3 4.1E-05 8.8E-10 81.2 18.5 175 165-364 13-218 (355)
86 KOG4658 Apoptotic ATPase [Sign 98.3 4.7E-07 1E-11 104.7 3.6 129 548-684 521-651 (889)
87 PRK14970 DNA polymerase III su 98.2 5.3E-05 1.2E-09 80.5 18.5 173 166-361 17-206 (367)
88 KOG0618 Serine/threonine phosp 98.2 1.1E-07 2.5E-12 104.7 -2.0 106 573-689 358-465 (1081)
89 PRK08903 DnaA regulatory inact 98.2 2.9E-05 6.4E-10 76.5 15.3 164 167-368 20-203 (227)
90 PRK14955 DNA polymerase III su 98.2 1.9E-05 4.1E-10 84.4 14.7 191 165-363 15-227 (397)
91 PRK05642 DNA replication initi 98.2 5.1E-05 1.1E-09 74.8 15.7 145 188-366 46-210 (234)
92 TIGR02903 spore_lon_C ATP-depe 98.2 3.5E-05 7.6E-10 86.6 15.9 200 165-367 153-398 (615)
93 PRK14952 DNA polymerase III su 98.2 4.9E-05 1.1E-09 84.0 16.6 190 165-366 12-222 (584)
94 PRK08451 DNA polymerase III su 98.2 9.8E-05 2.1E-09 80.4 18.4 172 165-364 13-218 (535)
95 PF05621 TniB: Bacterial TniB 98.2 4.7E-05 1E-09 75.7 14.4 185 174-360 45-257 (302)
96 PRK14950 DNA polymerase III su 98.2 7.7E-05 1.7E-09 83.7 18.1 190 165-364 15-221 (585)
97 PRK09376 rho transcription ter 98.2 5.9E-06 1.3E-10 84.9 8.3 101 177-281 158-267 (416)
98 PRK14087 dnaA chromosomal repl 98.1 0.00017 3.7E-09 78.0 20.0 182 165-366 115-321 (450)
99 PRK07764 DNA polymerase III su 98.1 5.2E-05 1.1E-09 87.2 16.7 171 166-361 15-218 (824)
100 PRK09087 hypothetical protein; 98.1 4.7E-05 1E-09 74.4 14.1 135 187-364 44-195 (226)
101 PRK09111 DNA polymerase III su 98.1 3E-05 6.6E-10 86.1 14.0 192 164-364 22-233 (598)
102 PF00308 Bac_DnaA: Bacterial d 98.1 0.00016 3.5E-09 70.4 17.3 175 166-364 9-208 (219)
103 KOG2543 Origin recognition com 98.1 7.3E-05 1.6E-09 75.3 14.8 159 165-330 5-191 (438)
104 cd00116 LRR_RI Leucine-rich re 98.1 1.6E-06 3.4E-11 90.5 3.3 162 527-689 108-291 (319)
105 PRK14959 DNA polymerase III su 98.1 6.3E-05 1.4E-09 82.9 15.7 192 166-368 16-225 (624)
106 PRK07133 DNA polymerase III su 98.1 9.4E-05 2E-09 82.8 17.0 183 165-364 17-220 (725)
107 PRK14953 DNA polymerase III su 98.1 0.00013 2.8E-09 79.5 17.6 173 166-365 16-221 (486)
108 PRK06305 DNA polymerase III su 98.1 0.00017 3.7E-09 78.0 17.5 175 165-364 16-223 (451)
109 PRK14954 DNA polymerase III su 98.0 0.0001 2.2E-09 82.2 16.0 191 165-359 15-223 (620)
110 PRK14971 DNA polymerase III su 98.0 0.00021 4.5E-09 80.1 18.4 171 166-361 17-219 (614)
111 TIGR01242 26Sp45 26S proteasom 98.0 5.7E-05 1.2E-09 80.0 13.2 165 165-358 121-328 (364)
112 PHA02544 44 clamp loader, smal 98.0 6.6E-05 1.4E-09 78.1 13.5 139 163-329 18-170 (316)
113 TIGR00362 DnaA chromosomal rep 98.0 0.00092 2E-08 72.0 22.1 175 165-363 110-309 (405)
114 KOG1259 Nischarin, modulator o 98.0 1.4E-06 3E-11 84.2 0.3 107 569-686 279-385 (490)
115 PF12799 LRR_4: Leucine Rich r 98.0 7.5E-06 1.6E-10 56.8 3.8 39 601-639 1-40 (44)
116 KOG3207 Beta-tubulin folding c 98.0 1.3E-06 2.9E-11 88.8 -0.0 131 548-686 170-312 (505)
117 TIGR03345 VI_ClpV1 type VI sec 98.0 7.1E-05 1.5E-09 87.2 14.0 175 165-358 186-390 (852)
118 KOG0532 Leucine-rich repeat (L 98.0 7.7E-07 1.7E-11 93.2 -2.0 130 552-695 100-230 (722)
119 PRK05563 DNA polymerase III su 98.0 0.00041 9E-09 77.1 18.9 187 164-362 14-218 (559)
120 PRK07399 DNA polymerase III su 98.0 0.0011 2.3E-08 68.2 20.6 189 167-364 5-221 (314)
121 PRK14088 dnaA chromosomal repl 97.9 0.00022 4.8E-09 77.1 15.9 176 165-363 105-304 (440)
122 PRK06647 DNA polymerase III su 97.9 0.00029 6.2E-09 78.1 16.9 185 165-363 15-219 (563)
123 PRK03992 proteasome-activating 97.9 8.3E-05 1.8E-09 79.2 12.3 164 165-357 130-336 (389)
124 TIGR00767 rho transcription te 97.9 2.6E-05 5.7E-10 80.7 8.1 96 185-282 166-267 (415)
125 PRK14965 DNA polymerase III su 97.9 0.00025 5.4E-09 79.2 16.3 189 165-364 15-221 (576)
126 KOG0989 Replication factor C, 97.9 6.2E-05 1.3E-09 73.7 9.7 176 164-357 34-223 (346)
127 PRK06620 hypothetical protein; 97.9 0.00035 7.5E-09 67.7 14.6 155 163-362 14-187 (214)
128 PRK00149 dnaA chromosomal repl 97.9 0.00089 1.9E-08 73.1 19.5 173 166-362 123-320 (450)
129 PRK11331 5-methylcytosine-spec 97.9 9.4E-05 2E-09 78.0 11.0 110 166-283 175-285 (459)
130 COG3267 ExeA Type II secretory 97.9 0.0014 3.1E-08 62.9 17.7 176 184-366 48-247 (269)
131 TIGR02639 ClpA ATP-dependent C 97.8 9.2E-05 2E-09 85.6 11.6 149 166-332 182-358 (731)
132 PRK14948 DNA polymerase III su 97.8 0.00073 1.6E-08 75.8 18.3 189 166-364 16-222 (620)
133 KOG4237 Extracellular matrix p 97.8 1.7E-06 3.6E-11 86.9 -2.4 128 551-686 68-199 (498)
134 COG2255 RuvB Holliday junction 97.8 0.00026 5.7E-09 68.7 12.3 170 162-366 22-225 (332)
135 PRK08769 DNA polymerase III su 97.8 0.001 2.2E-08 68.1 17.2 165 174-364 12-208 (319)
136 KOG3665 ZYG-1-like serine/thre 97.8 9.5E-06 2.1E-10 91.6 2.3 129 526-660 121-259 (699)
137 PRK05707 DNA polymerase III su 97.8 0.0007 1.5E-08 70.0 15.8 89 269-364 105-203 (328)
138 KOG2227 Pre-initiation complex 97.8 0.00073 1.6E-08 70.1 15.4 167 163-335 147-341 (529)
139 TIGR02881 spore_V_K stage V sp 97.8 0.00033 7.2E-09 70.5 12.9 148 167-334 7-193 (261)
140 COG0542 clpA ATP-binding subun 97.7 0.0009 2E-08 75.1 16.7 112 166-289 491-612 (786)
141 KOG3207 Beta-tubulin folding c 97.7 9.7E-06 2.1E-10 82.6 0.9 135 547-686 194-337 (505)
142 PF10443 RNA12: RNA12 protein; 97.7 0.0048 1E-07 64.4 20.4 192 171-371 1-285 (431)
143 CHL00095 clpC Clp protease ATP 97.7 0.00015 3.2E-09 84.9 10.7 174 166-356 179-379 (821)
144 PRK10865 protein disaggregatio 97.7 0.00034 7.4E-09 81.8 13.3 147 166-332 178-354 (857)
145 CHL00181 cbbX CbbX; Provisiona 97.7 0.0013 2.9E-08 66.7 15.6 148 167-334 24-211 (287)
146 PRK12422 chromosomal replicati 97.7 0.007 1.5E-07 65.4 21.9 146 188-358 142-307 (445)
147 KOG2004 Mitochondrial ATP-depe 97.7 0.0021 4.6E-08 70.0 17.4 150 167-332 412-596 (906)
148 KOG3665 ZYG-1-like serine/thre 97.6 1.9E-05 4E-10 89.3 1.7 61 573-635 147-207 (699)
149 COG0466 Lon ATP-dependent Lon 97.6 0.00056 1.2E-08 74.7 12.6 151 166-332 323-508 (782)
150 PF12799 LRR_4: Leucine Rich r 97.6 3.9E-05 8.6E-10 53.2 2.6 33 624-661 2-34 (44)
151 TIGR02880 cbbX_cfxQ probable R 97.6 0.0013 2.8E-08 66.8 14.7 147 167-333 23-209 (284)
152 TIGR03689 pup_AAA proteasome A 97.6 0.00072 1.6E-08 73.4 13.4 151 166-332 182-378 (512)
153 TIGR03346 chaperone_ClpB ATP-d 97.6 0.00033 7.1E-09 82.3 11.3 148 166-332 173-349 (852)
154 COG4886 Leucine-rich repeat (L 97.6 4.3E-05 9.3E-10 82.3 3.8 126 551-688 141-290 (394)
155 PTZ00454 26S protease regulato 97.6 0.00083 1.8E-08 71.3 13.3 164 166-358 145-351 (398)
156 PRK08116 hypothetical protein; 97.6 0.0003 6.5E-09 70.7 9.5 99 188-305 115-220 (268)
157 PRK14086 dnaA chromosomal repl 97.6 0.0012 2.7E-08 72.6 14.7 151 188-362 315-486 (617)
158 smart00382 AAA ATPases associa 97.6 0.00029 6.3E-09 63.2 8.5 89 188-284 3-92 (148)
159 PF00004 AAA: ATPase family as 97.6 0.00019 4E-09 63.9 7.0 68 190-282 1-70 (132)
160 PRK08058 DNA polymerase III su 97.6 0.0017 3.8E-08 67.4 15.1 153 168-330 7-180 (329)
161 PRK10536 hypothetical protein; 97.6 0.00027 5.8E-09 69.0 8.2 129 167-304 56-211 (262)
162 PTZ00361 26 proteosome regulat 97.5 0.00018 3.8E-09 76.9 7.2 163 166-357 183-388 (438)
163 PRK12608 transcription termina 97.5 0.00047 1E-08 71.1 9.9 104 175-280 120-230 (380)
164 PRK06871 DNA polymerase III su 97.5 0.0056 1.2E-07 62.9 17.6 169 175-361 11-200 (325)
165 TIGR01241 FtsH_fam ATP-depende 97.5 0.001 2.2E-08 73.6 13.1 170 166-364 55-267 (495)
166 TIGR00763 lon ATP-dependent pr 97.5 0.0028 6.2E-08 73.8 17.2 44 166-209 320-369 (775)
167 PRK15386 type III secretion pr 97.5 0.00018 3.9E-09 75.0 6.4 120 548-685 50-187 (426)
168 PRK06090 DNA polymerase III su 97.5 0.0092 2E-07 61.1 18.7 157 174-364 11-201 (319)
169 PF05673 DUF815: Protein of un 97.5 0.0025 5.4E-08 61.6 13.6 46 164-209 25-74 (249)
170 PF04665 Pox_A32: Poxvirus A32 97.5 0.00045 9.7E-09 67.2 8.6 36 188-226 14-49 (241)
171 PRK07993 DNA polymerase III su 97.5 0.0044 9.5E-08 64.3 16.4 170 174-362 10-202 (334)
172 COG1373 Predicted ATPase (AAA+ 97.5 0.0025 5.4E-08 67.9 15.0 127 174-328 25-163 (398)
173 COG4886 Leucine-rich repeat (L 97.4 6.8E-05 1.5E-09 80.7 2.8 133 549-692 115-271 (394)
174 KOG1514 Origin recognition com 97.4 0.005 1.1E-07 67.3 16.6 196 164-364 394-621 (767)
175 KOG0733 Nuclear AAA ATPase (VC 97.4 0.0025 5.5E-08 68.1 14.1 163 166-357 190-395 (802)
176 TIGR00602 rad24 checkpoint pro 97.4 0.001 2.2E-08 74.2 11.9 48 162-209 80-132 (637)
177 KOG1859 Leucine-rich repeat pr 97.4 6E-06 1.3E-10 89.0 -5.3 109 565-686 178-290 (1096)
178 PRK11034 clpA ATP-dependent Cl 97.4 0.00034 7.3E-09 80.0 8.1 149 166-332 186-362 (758)
179 KOG1859 Leucine-rich repeat pr 97.4 2.6E-05 5.5E-10 84.3 -1.0 83 597-686 183-265 (1096)
180 CHL00176 ftsH cell division pr 97.4 0.0044 9.5E-08 69.7 16.4 163 166-357 183-387 (638)
181 PRK10787 DNA-binding ATP-depen 97.4 0.017 3.8E-07 66.8 21.7 151 166-332 322-506 (784)
182 TIGR03345 VI_ClpV1 type VI sec 97.4 0.015 3.2E-07 68.1 20.8 45 165-209 565-618 (852)
183 PF13177 DNA_pol3_delta2: DNA 97.4 0.0024 5.3E-08 58.9 11.7 116 170-306 1-142 (162)
184 KOG4237 Extracellular matrix p 97.4 2.3E-05 4.9E-10 79.0 -2.0 119 564-693 59-181 (498)
185 COG1222 RPT1 ATP-dependent 26S 97.3 0.0051 1.1E-07 62.0 14.1 163 167-358 152-357 (406)
186 PTZ00494 tuzin-like protein; P 97.3 0.28 6.1E-06 51.4 26.9 165 158-331 363-543 (664)
187 KOG0735 AAA+-type ATPase [Post 97.3 0.0014 3.1E-08 71.2 10.6 154 187-364 431-616 (952)
188 KOG2739 Leucine-rich acidic nu 97.3 9.7E-05 2.1E-09 70.9 1.8 113 564-685 33-153 (260)
189 TIGR03346 chaperone_ClpB ATP-d 97.3 0.038 8.1E-07 65.3 22.9 110 165-285 564-682 (852)
190 KOG2035 Replication factor C, 97.2 0.015 3.2E-07 56.6 15.6 221 168-407 15-282 (351)
191 PRK08118 topology modulation p 97.2 0.00018 3.9E-09 66.8 2.4 35 188-223 2-37 (167)
192 PRK10865 protein disaggregatio 97.2 0.027 5.8E-07 66.2 20.5 44 166-209 568-620 (857)
193 PF07728 AAA_5: AAA domain (dy 97.2 0.00025 5.3E-09 63.9 2.8 85 190-291 2-86 (139)
194 KOG0531 Protein phosphatase 1, 97.2 0.00014 3.1E-09 78.5 1.5 81 597-684 114-195 (414)
195 COG0593 DnaA ATPase involved i 97.2 0.007 1.5E-07 63.5 13.6 169 165-357 87-279 (408)
196 cd01133 F1-ATPase_beta F1 ATP 97.2 0.0011 2.4E-08 65.8 7.3 94 186-281 68-174 (274)
197 CHL00095 clpC Clp protease ATP 97.1 0.03 6.5E-07 65.8 20.4 108 166-285 509-626 (821)
198 PRK15386 type III secretion pr 97.1 0.00046 9.9E-09 72.1 4.4 83 570-672 48-135 (426)
199 PRK13531 regulatory ATPase Rav 97.1 0.0031 6.7E-08 67.4 10.3 42 166-209 20-61 (498)
200 TIGR02640 gas_vesic_GvpN gas v 97.1 0.02 4.4E-07 57.5 15.7 55 175-237 11-65 (262)
201 KOG4579 Leucine-rich repeat (L 97.1 8.6E-05 1.9E-09 63.9 -1.3 110 574-692 27-139 (177)
202 TIGR02902 spore_lonB ATP-depen 97.0 0.0042 9.2E-08 68.9 11.6 44 166-209 65-108 (531)
203 KOG1909 Ran GTPase-activating 97.0 0.00021 4.5E-09 71.2 1.0 138 549-686 156-309 (382)
204 PRK04132 replication factor C 97.0 0.019 4.2E-07 66.1 16.5 150 192-363 569-730 (846)
205 PRK06964 DNA polymerase III su 97.0 0.025 5.5E-07 58.6 15.9 86 268-364 130-225 (342)
206 PF02562 PhoH: PhoH-like prote 97.0 0.00055 1.2E-08 65.0 3.5 124 170-304 4-154 (205)
207 PRK06921 hypothetical protein; 97.0 0.0029 6.3E-08 63.5 8.9 39 186-226 116-154 (266)
208 PLN00020 ribulose bisphosphate 97.0 0.011 2.4E-07 60.6 12.8 24 186-209 147-170 (413)
209 CHL00195 ycf46 Ycf46; Provisio 97.0 0.0069 1.5E-07 65.9 12.3 166 166-358 228-429 (489)
210 PF00448 SRP54: SRP54-type pro 97.0 0.0013 2.8E-08 62.7 5.9 57 187-246 1-58 (196)
211 PRK12377 putative replication 97.0 0.004 8.7E-08 61.5 9.5 75 186-281 100-174 (248)
212 PRK08181 transposase; Validate 97.0 0.0017 3.8E-08 64.9 7.0 103 180-306 101-209 (269)
213 KOG2228 Origin recognition com 97.0 0.01 2.3E-07 59.2 12.1 165 166-333 24-220 (408)
214 TIGR01243 CDC48 AAA family ATP 97.0 0.01 2.2E-07 69.0 14.3 164 166-358 453-657 (733)
215 KOG0991 Replication factor C, 97.0 0.0012 2.5E-08 62.2 5.1 98 165-284 26-127 (333)
216 PRK04296 thymidine kinase; Pro 96.9 0.002 4.4E-08 61.2 6.8 110 188-306 3-116 (190)
217 KOG2120 SCF ubiquitin ligase, 96.9 7.1E-05 1.5E-09 72.7 -3.2 61 620-686 310-374 (419)
218 TIGR01243 CDC48 AAA family ATP 96.9 0.0063 1.4E-07 70.7 12.0 164 167-359 179-382 (733)
219 KOG4579 Leucine-rich repeat (L 96.9 7.7E-05 1.7E-09 64.2 -2.7 96 567-671 46-142 (177)
220 COG1223 Predicted ATPase (AAA+ 96.9 0.01 2.2E-07 57.0 11.0 163 166-357 121-318 (368)
221 PHA00729 NTP-binding motif con 96.9 0.0052 1.1E-07 59.1 9.1 33 177-209 7-39 (226)
222 KOG1909 Ran GTPase-activating 96.9 0.0005 1.1E-08 68.6 2.1 87 599-686 183-281 (382)
223 TIGR02639 ClpA ATP-dependent C 96.9 0.014 3.1E-07 67.6 14.2 106 166-285 454-568 (731)
224 COG0470 HolB ATPase involved i 96.8 0.0092 2E-07 62.3 11.5 117 168-306 3-149 (325)
225 PRK06526 transposase; Provisio 96.8 0.0028 6E-08 63.1 7.0 24 187-210 98-121 (254)
226 smart00763 AAA_PrkA PrkA AAA d 96.8 0.0014 3E-08 67.5 4.9 46 165-210 50-101 (361)
227 PRK09183 transposase/IS protei 96.8 0.0049 1.1E-07 61.7 8.8 23 187-209 102-124 (259)
228 KOG0731 AAA+-type ATPase conta 96.8 0.031 6.7E-07 62.7 15.5 167 166-360 311-520 (774)
229 PF13207 AAA_17: AAA domain; P 96.8 0.00099 2.2E-08 58.2 2.9 21 189-209 1-21 (121)
230 PHA02244 ATPase-like protein 96.7 0.011 2.3E-07 61.1 10.6 49 159-209 89-141 (383)
231 TIGR02237 recomb_radB DNA repa 96.7 0.0069 1.5E-07 58.7 8.8 47 187-237 12-58 (209)
232 cd01123 Rad51_DMC1_radA Rad51_ 96.7 0.01 2.2E-07 58.7 10.1 50 187-236 19-71 (235)
233 COG2812 DnaX DNA polymerase II 96.7 0.0075 1.6E-07 65.2 9.5 181 166-359 16-215 (515)
234 PRK08699 DNA polymerase III su 96.7 0.034 7.5E-07 57.4 14.0 81 269-360 112-202 (325)
235 TIGR02236 recomb_radA DNA repa 96.6 0.01 2.2E-07 61.4 10.0 57 187-244 95-154 (310)
236 PRK08939 primosomal protein Dn 96.6 0.011 2.3E-07 60.6 9.9 113 170-304 135-259 (306)
237 PRK07261 topology modulation p 96.6 0.0035 7.5E-08 58.5 5.9 22 189-210 2-23 (171)
238 PF14532 Sigma54_activ_2: Sigm 96.6 0.0057 1.2E-07 54.9 7.1 102 169-306 1-110 (138)
239 KOG0744 AAA+-type ATPase [Post 96.6 0.0062 1.4E-07 60.3 7.6 82 187-280 177-260 (423)
240 PRK09361 radB DNA repair and r 96.6 0.0081 1.8E-07 59.0 8.6 45 187-235 23-67 (225)
241 KOG0743 AAA+-type ATPase [Post 96.6 0.17 3.7E-06 53.1 18.1 142 188-367 236-412 (457)
242 KOG0734 AAA+-type ATPase conta 96.6 0.022 4.8E-07 60.3 11.6 91 167-282 305-408 (752)
243 KOG0741 AAA+-type ATPase [Post 96.6 0.028 6.1E-07 59.4 12.3 139 187-354 538-704 (744)
244 KOG2123 Uncharacterized conser 96.6 0.00016 3.5E-09 69.6 -3.7 101 573-681 18-123 (388)
245 PRK06696 uridine kinase; Valid 96.6 0.0027 5.8E-08 62.3 4.7 39 171-209 3-44 (223)
246 TIGR02238 recomb_DMC1 meiotic 96.6 0.017 3.6E-07 59.3 10.7 58 187-245 96-156 (313)
247 KOG1969 DNA replication checkp 96.5 0.0093 2E-07 65.4 8.4 73 187-283 326-400 (877)
248 cd01393 recA_like RecA is a b 96.5 0.014 3E-07 57.4 9.2 48 187-236 19-71 (226)
249 KOG2739 Leucine-rich acidic nu 96.5 0.0014 3E-08 63.2 2.0 82 598-687 40-128 (260)
250 KOG0730 AAA+-type ATPase [Post 96.5 0.03 6.5E-07 61.0 12.1 160 169-357 436-636 (693)
251 PRK00771 signal recognition pa 96.5 0.013 2.9E-07 62.7 9.6 91 186-280 94-185 (437)
252 PF01695 IstB_IS21: IstB-like 96.5 0.0046 1E-07 58.0 5.4 76 186-283 46-121 (178)
253 COG1618 Predicted nucleotide k 96.4 0.0025 5.4E-08 56.7 3.2 35 188-224 6-41 (179)
254 PRK05541 adenylylsulfate kinas 96.4 0.013 2.8E-07 55.1 8.3 36 186-224 6-41 (176)
255 KOG0531 Protein phosphatase 1, 96.4 0.0013 2.9E-08 71.0 1.8 108 572-692 70-178 (414)
256 TIGR01069 mutS2 MutS2 family p 96.4 0.058 1.3E-06 62.5 15.0 181 186-383 321-520 (771)
257 COG1875 NYN ribonuclease and A 96.4 0.011 2.3E-07 59.8 7.7 127 170-304 228-386 (436)
258 PLN03187 meiotic recombination 96.4 0.025 5.4E-07 58.6 10.7 58 187-245 126-186 (344)
259 COG1484 DnaC DNA replication p 96.4 0.009 1.9E-07 59.5 7.2 76 186-282 104-179 (254)
260 cd01394 radB RadB. The archaea 96.4 0.013 2.8E-07 57.2 8.3 42 187-231 19-60 (218)
261 cd03115 SRP The signal recogni 96.3 0.0098 2.1E-07 55.7 6.9 53 189-244 2-55 (173)
262 PRK07952 DNA replication prote 96.3 0.017 3.8E-07 56.8 8.8 76 187-282 99-174 (244)
263 KOG0733 Nuclear AAA ATPase (VC 96.3 0.078 1.7E-06 57.3 13.7 123 187-334 545-694 (802)
264 COG1419 FlhF Flagellar GTP-bin 96.3 0.02 4.3E-07 59.4 9.2 89 187-282 203-293 (407)
265 PRK15455 PrkA family serine pr 96.3 0.0039 8.4E-08 67.5 4.2 43 167-209 77-125 (644)
266 cd00561 CobA_CobO_BtuR ATP:cor 96.3 0.035 7.6E-07 50.5 9.7 117 188-307 3-139 (159)
267 PRK11889 flhF flagellar biosyn 96.2 0.066 1.4E-06 55.8 12.6 24 186-209 240-263 (436)
268 TIGR02012 tigrfam_recA protein 96.2 0.018 3.9E-07 58.9 8.5 84 187-280 55-143 (321)
269 COG0563 Adk Adenylate kinase a 96.2 0.013 2.8E-07 54.8 6.6 22 189-210 2-23 (178)
270 COG0468 RecA RecA/RadA recombi 96.2 0.038 8.1E-07 55.3 10.2 89 187-280 60-151 (279)
271 TIGR03499 FlhF flagellar biosy 96.2 0.028 6E-07 57.1 9.5 86 187-279 194-281 (282)
272 PRK10867 signal recognition pa 96.2 0.015 3.2E-07 62.2 7.8 24 186-209 99-122 (433)
273 cd00983 recA RecA is a bacter 96.1 0.02 4.3E-07 58.6 8.4 84 187-280 55-143 (325)
274 PF08423 Rad51: Rad51; InterP 96.1 0.028 6E-07 56.1 9.3 57 187-244 38-97 (256)
275 PRK14722 flhF flagellar biosyn 96.1 0.02 4.3E-07 59.9 8.4 89 187-282 137-227 (374)
276 PRK06835 DNA replication prote 96.1 0.028 6E-07 58.1 9.4 38 187-227 183-220 (329)
277 PRK09270 nucleoside triphospha 96.1 0.029 6.3E-07 55.2 9.3 25 185-209 31-55 (229)
278 PRK14974 cell division protein 96.1 0.04 8.7E-07 56.9 10.5 92 186-282 139-234 (336)
279 PRK11034 clpA ATP-dependent Cl 96.1 0.019 4.1E-07 66.0 8.9 106 166-285 458-572 (758)
280 cd01120 RecA-like_NTPases RecA 96.1 0.022 4.7E-07 52.5 7.9 40 189-231 1-40 (165)
281 cd03238 ABC_UvrA The excision 96.1 0.047 1E-06 51.0 10.1 23 187-209 21-43 (176)
282 KOG1644 U2-associated snRNP A' 96.1 0.0086 1.9E-07 55.5 4.8 87 570-660 60-149 (233)
283 PRK06547 hypothetical protein; 96.1 0.0083 1.8E-07 55.9 4.8 33 177-209 5-37 (172)
284 TIGR01425 SRP54_euk signal rec 96.1 0.083 1.8E-06 56.3 12.8 24 186-209 99-122 (429)
285 PTZ00035 Rad51 protein; Provis 96.0 0.063 1.4E-06 55.8 11.6 57 187-244 118-177 (337)
286 PRK05022 anaerobic nitric oxid 96.0 0.14 3E-06 56.9 15.0 63 165-230 186-250 (509)
287 PRK07667 uridine kinase; Provi 96.0 0.0089 1.9E-07 57.0 4.9 35 175-209 3-39 (193)
288 KOG0738 AAA+-type ATPase [Post 96.0 0.098 2.1E-06 53.5 12.2 43 167-209 213-267 (491)
289 cd01122 GP4d_helicase GP4d_hel 96.0 0.051 1.1E-06 55.0 10.8 52 187-242 30-81 (271)
290 PRK09354 recA recombinase A; P 96.0 0.027 5.8E-07 58.2 8.5 84 187-280 60-148 (349)
291 TIGR00959 ffh signal recogniti 96.0 0.021 4.5E-07 61.1 7.9 58 186-245 98-156 (428)
292 cd03247 ABCC_cytochrome_bd The 96.0 0.068 1.5E-06 50.2 10.7 23 187-209 28-50 (178)
293 KOG0728 26S proteasome regulat 95.9 0.078 1.7E-06 50.7 10.6 146 162-332 142-331 (404)
294 COG2607 Predicted ATPase (AAA+ 95.9 0.045 9.8E-07 52.2 9.0 87 166-283 60-152 (287)
295 PRK04301 radA DNA repair and r 95.9 0.046 9.9E-07 56.7 10.0 57 187-244 102-161 (317)
296 COG0464 SpoVK ATPases of the A 95.9 0.081 1.8E-06 58.7 12.6 143 167-334 243-425 (494)
297 PRK00409 recombination and DNA 95.9 0.12 2.7E-06 60.0 14.4 183 186-383 326-525 (782)
298 KOG1644 U2-associated snRNP A' 95.9 0.01 2.2E-07 55.0 4.3 100 574-684 42-149 (233)
299 PRK07132 DNA polymerase III su 95.9 0.6 1.3E-05 47.6 17.5 159 175-363 5-184 (299)
300 PLN03186 DNA repair protein RA 95.9 0.051 1.1E-06 56.4 9.9 58 187-245 123-183 (342)
301 TIGR01360 aden_kin_iso1 adenyl 95.8 0.012 2.5E-07 56.0 4.8 24 186-209 2-25 (188)
302 TIGR00064 ftsY signal recognit 95.8 0.03 6.5E-07 56.4 7.7 56 186-244 71-127 (272)
303 KOG2120 SCF ubiquitin ligase, 95.8 0.0017 3.7E-08 63.4 -1.2 38 649-686 311-349 (419)
304 cd03281 ABC_MSH5_euk MutS5 hom 95.8 0.021 4.6E-07 55.3 6.4 23 187-209 29-51 (213)
305 KOG0736 Peroxisome assembly fa 95.7 0.2 4.4E-06 55.7 14.1 92 167-283 673-777 (953)
306 PF00485 PRK: Phosphoribulokin 95.7 0.0071 1.5E-07 57.8 2.9 21 189-209 1-21 (194)
307 PF13238 AAA_18: AAA domain; P 95.7 0.007 1.5E-07 53.3 2.7 21 190-210 1-21 (129)
308 KOG0729 26S proteasome regulat 95.7 0.05 1.1E-06 52.4 8.3 49 167-217 178-239 (435)
309 TIGR02239 recomb_RAD51 DNA rep 95.7 0.051 1.1E-06 56.0 9.1 58 187-245 96-156 (316)
310 PF12061 DUF3542: Protein of u 95.7 0.014 3.1E-07 57.3 4.6 78 9-86 296-374 (402)
311 cd02025 PanK Pantothenate kina 95.7 0.034 7.5E-07 54.1 7.4 41 189-231 1-42 (220)
312 PF01583 APS_kinase: Adenylyls 95.7 0.013 2.9E-07 53.0 4.2 37 187-226 2-38 (156)
313 PF10236 DAP3: Mitochondrial r 95.6 0.34 7.4E-06 49.8 14.9 49 313-361 258-306 (309)
314 TIGR01817 nifA Nif-specific re 95.6 0.18 4E-06 56.4 14.1 45 165-209 195-241 (534)
315 PRK11608 pspF phage shock prot 95.6 0.062 1.3E-06 55.9 9.5 44 166-209 6-51 (326)
316 COG4608 AppF ABC-type oligopep 95.6 0.051 1.1E-06 53.3 8.2 94 186-283 38-140 (268)
317 TIGR03877 thermo_KaiC_1 KaiC d 95.6 0.1 2.2E-06 51.7 10.6 47 187-238 21-67 (237)
318 COG0541 Ffh Signal recognition 95.6 0.18 3.9E-06 52.7 12.4 117 186-305 99-250 (451)
319 cd02019 NK Nucleoside/nucleoti 95.6 0.0094 2E-07 46.1 2.5 21 189-209 1-21 (69)
320 PRK05480 uridine/cytidine kina 95.6 0.011 2.4E-07 57.3 3.6 25 185-209 4-28 (209)
321 cd03214 ABC_Iron-Siderophores_ 95.6 0.11 2.3E-06 49.0 10.2 115 187-306 25-158 (180)
322 PTZ00301 uridine kinase; Provi 95.6 0.017 3.8E-07 55.5 4.8 23 187-209 3-25 (210)
323 PRK08233 hypothetical protein; 95.5 0.011 2.4E-07 55.8 3.4 23 187-209 3-25 (182)
324 TIGR01359 UMP_CMP_kin_fam UMP- 95.5 0.018 4E-07 54.4 4.9 21 189-209 1-21 (183)
325 cd01135 V_A-ATPase_B V/A-type 95.5 0.05 1.1E-06 54.1 7.9 95 186-281 68-177 (276)
326 cd03222 ABC_RNaseL_inhibitor T 95.5 0.15 3.2E-06 47.7 10.7 24 186-209 24-47 (177)
327 COG1102 Cmk Cytidylate kinase 95.5 0.018 3.9E-07 51.4 4.3 44 189-246 2-45 (179)
328 COG0465 HflB ATP-dependent Zn 95.5 0.13 2.9E-06 56.6 11.8 92 165-281 149-253 (596)
329 PF13671 AAA_33: AAA domain; P 95.5 0.011 2.3E-07 53.4 3.0 21 189-209 1-21 (143)
330 TIGR00235 udk uridine kinase. 95.5 0.011 2.5E-07 57.1 3.4 24 186-209 5-28 (207)
331 TIGR02974 phageshock_pspF psp 95.5 0.082 1.8E-06 54.9 9.9 42 168-209 1-44 (329)
332 KOG2982 Uncharacterized conser 95.5 0.0049 1.1E-07 60.3 0.8 85 572-661 69-156 (418)
333 TIGR00390 hslU ATP-dependent p 95.5 0.028 6.1E-07 59.0 6.4 45 165-209 11-69 (441)
334 PRK15429 formate hydrogenlyase 95.5 0.1 2.2E-06 60.4 11.6 61 166-229 376-438 (686)
335 PRK12723 flagellar biosynthesi 95.5 0.06 1.3E-06 56.8 8.9 92 186-282 173-266 (388)
336 PF13481 AAA_25: AAA domain; P 95.4 0.036 7.8E-07 52.9 6.6 42 188-229 33-81 (193)
337 cd01131 PilT Pilus retraction 95.4 0.028 6E-07 53.9 5.8 22 188-209 2-23 (198)
338 PRK08533 flagellar accessory p 95.4 0.12 2.7E-06 50.7 10.4 48 187-239 24-71 (230)
339 PRK06762 hypothetical protein; 95.4 0.013 2.7E-07 54.5 3.3 23 187-209 2-24 (166)
340 COG1121 ZnuC ABC-type Mn/Zn tr 95.3 0.12 2.7E-06 50.6 9.8 23 187-209 30-52 (254)
341 cd03283 ABC_MutS-like MutS-lik 95.3 0.16 3.5E-06 48.6 10.6 22 188-209 26-47 (199)
342 PRK14527 adenylate kinase; Pro 95.3 0.033 7.2E-07 53.0 5.9 25 185-209 4-28 (191)
343 PRK05703 flhF flagellar biosyn 95.3 0.063 1.4E-06 57.7 8.5 87 187-280 221-309 (424)
344 COG3640 CooC CO dehydrogenase 95.3 0.027 5.8E-07 53.7 4.8 43 189-233 2-44 (255)
345 COG1116 TauB ABC-type nitrate/ 95.2 0.071 1.5E-06 51.6 7.8 24 186-209 28-51 (248)
346 PRK12597 F0F1 ATP synthase sub 95.2 0.044 9.5E-07 58.9 7.1 95 185-281 141-248 (461)
347 COG1428 Deoxynucleoside kinase 95.2 0.031 6.8E-07 52.5 5.1 47 187-239 4-50 (216)
348 PF00158 Sigma54_activat: Sigm 95.2 0.087 1.9E-06 48.8 8.0 127 168-306 1-144 (168)
349 cd00544 CobU Adenosylcobinamid 95.2 0.087 1.9E-06 48.8 8.0 82 189-279 1-82 (169)
350 TIGR00150 HI0065_YjeE ATPase, 95.2 0.03 6.5E-07 49.3 4.7 38 173-210 6-45 (133)
351 TIGR00554 panK_bact pantothena 95.2 0.057 1.2E-06 54.6 7.3 45 185-231 60-105 (290)
352 PF12775 AAA_7: P-loop contain 95.2 0.019 4.1E-07 57.8 3.9 90 176-282 23-112 (272)
353 PRK09280 F0F1 ATP synthase sub 95.1 0.076 1.6E-06 56.9 8.4 94 185-280 142-248 (463)
354 PF08433 KTI12: Chromatin asso 95.1 0.055 1.2E-06 54.3 7.1 80 188-282 2-82 (270)
355 cd03282 ABC_MSH4_euk MutS4 hom 95.1 0.05 1.1E-06 52.3 6.5 111 187-306 29-151 (204)
356 cd03221 ABCF_EF-3 ABCF_EF-3 E 95.1 0.15 3.3E-06 45.9 9.3 23 187-209 26-48 (144)
357 KOG0735 AAA+-type ATPase [Post 95.1 0.68 1.5E-05 51.3 15.4 91 167-282 668-772 (952)
358 KOG0739 AAA+-type ATPase [Post 95.1 0.38 8.2E-06 47.5 12.2 91 167-281 134-236 (439)
359 cd03228 ABCC_MRP_Like The MRP 95.1 0.15 3.3E-06 47.5 9.6 24 186-209 27-50 (171)
360 PTZ00088 adenylate kinase 1; P 95.1 0.041 8.9E-07 53.8 5.8 20 190-209 9-28 (229)
361 PF00006 ATP-synt_ab: ATP synt 95.1 0.078 1.7E-06 51.2 7.6 95 179-279 6-114 (215)
362 KOG2123 Uncharacterized conser 95.1 0.0022 4.7E-08 62.1 -3.0 88 598-692 16-105 (388)
363 PRK10463 hydrogenase nickel in 95.1 0.032 6.8E-07 56.0 5.1 37 180-218 97-133 (290)
364 cd03230 ABC_DR_subfamily_A Thi 95.1 0.11 2.3E-06 48.6 8.4 23 187-209 26-48 (173)
365 PF00910 RNA_helicase: RNA hel 95.0 0.014 3E-07 49.7 2.1 20 190-209 1-20 (107)
366 TIGR01650 PD_CobS cobaltochela 95.0 0.097 2.1E-06 53.5 8.4 69 161-237 40-108 (327)
367 PRK12727 flagellar biosynthesi 95.0 0.072 1.6E-06 57.8 7.8 88 187-281 350-439 (559)
368 COG0572 Udk Uridine kinase [Nu 95.0 0.02 4.3E-07 54.5 3.3 28 187-216 8-35 (218)
369 PRK12678 transcription termina 95.0 0.07 1.5E-06 57.9 7.6 101 177-280 405-513 (672)
370 PRK03839 putative kinase; Prov 95.0 0.018 3.9E-07 54.3 3.0 21 189-209 2-22 (180)
371 COG4088 Predicted nucleotide k 95.0 0.025 5.4E-07 52.6 3.7 22 188-209 2-23 (261)
372 cd03246 ABCC_Protease_Secretio 95.0 0.11 2.5E-06 48.4 8.4 23 187-209 28-50 (173)
373 KOG2982 Uncharacterized conser 95.0 0.0061 1.3E-07 59.7 -0.3 85 549-636 70-159 (418)
374 PF00560 LRR_1: Leucine Rich R 95.0 0.011 2.4E-07 34.0 0.9 16 625-640 2-17 (22)
375 PRK12726 flagellar biosynthesi 95.0 0.15 3.1E-06 53.1 9.6 88 187-281 206-296 (407)
376 PF06745 KaiC: KaiC; InterPro 95.0 0.039 8.3E-07 54.2 5.4 48 187-238 19-66 (226)
377 TIGR03575 selen_PSTK_euk L-ser 94.9 0.061 1.3E-06 55.5 6.9 37 190-228 2-38 (340)
378 PRK10733 hflB ATP-dependent me 94.9 0.18 3.9E-06 57.5 11.4 162 167-357 153-356 (644)
379 PRK04040 adenylate kinase; Pro 94.9 0.02 4.4E-07 54.2 3.2 23 187-209 2-24 (188)
380 TIGR03881 KaiC_arch_4 KaiC dom 94.9 0.13 2.9E-06 50.5 9.2 40 187-229 20-59 (229)
381 KOG1051 Chaperone HSP104 and r 94.9 0.19 4.2E-06 57.8 11.4 106 166-286 562-676 (898)
382 PF07724 AAA_2: AAA domain (Cd 94.9 0.0062 1.3E-07 56.7 -0.5 42 187-231 3-45 (171)
383 TIGR00708 cobA cob(I)alamin ad 94.9 0.24 5.2E-06 45.7 9.9 116 187-306 5-140 (173)
384 smart00534 MUTSac ATPase domai 94.9 0.026 5.6E-07 53.5 3.8 21 189-209 1-21 (185)
385 cd03223 ABCD_peroxisomal_ALDP 94.9 0.26 5.7E-06 45.6 10.4 24 187-210 27-50 (166)
386 cd03216 ABC_Carb_Monos_I This 94.8 0.097 2.1E-06 48.4 7.5 23 187-209 26-48 (163)
387 TIGR03878 thermo_KaiC_2 KaiC d 94.8 0.21 4.6E-06 50.0 10.4 39 187-228 36-74 (259)
388 PRK07276 DNA polymerase III su 94.8 1.4 3E-05 44.6 16.1 61 268-329 102-172 (290)
389 TIGR01039 atpD ATP synthase, F 94.8 0.078 1.7E-06 56.6 7.5 95 185-281 141-248 (461)
390 PRK05201 hslU ATP-dependent pr 94.8 0.057 1.2E-06 56.8 6.3 45 165-209 14-72 (443)
391 PRK06002 fliI flagellum-specif 94.8 0.12 2.5E-06 55.3 8.7 90 187-281 165-265 (450)
392 PRK11388 DNA-binding transcrip 94.8 0.75 1.6E-05 52.9 16.1 44 166-209 325-370 (638)
393 cd02023 UMPK Uridine monophosp 94.8 0.018 3.9E-07 55.2 2.5 21 189-209 1-21 (198)
394 PRK08972 fliI flagellum-specif 94.8 0.11 2.4E-06 55.2 8.4 90 186-281 161-263 (444)
395 PRK06067 flagellar accessory p 94.8 0.12 2.6E-06 51.0 8.4 48 187-239 25-72 (234)
396 PRK06217 hypothetical protein; 94.8 0.046 1E-06 51.6 5.2 22 189-210 3-24 (183)
397 PF00154 RecA: recA bacterial 94.8 0.049 1.1E-06 55.6 5.6 85 187-281 53-142 (322)
398 TIGR02322 phosphon_PhnN phosph 94.7 0.024 5.1E-07 53.4 3.1 22 188-209 2-23 (179)
399 PRK00625 shikimate kinase; Pro 94.7 0.022 4.8E-07 53.0 2.8 21 189-209 2-22 (173)
400 PF13245 AAA_19: Part of AAA d 94.7 0.047 1E-06 43.0 4.2 24 186-209 9-33 (76)
401 PRK00131 aroK shikimate kinase 94.7 0.026 5.6E-07 52.8 3.3 23 187-209 4-26 (175)
402 TIGR02858 spore_III_AA stage I 94.7 0.31 6.8E-06 48.9 11.1 35 175-209 98-133 (270)
403 PF08298 AAA_PrkA: PrkA AAA do 94.7 0.053 1.2E-06 55.4 5.5 45 165-209 60-110 (358)
404 PRK12724 flagellar biosynthesi 94.6 0.075 1.6E-06 56.1 6.7 58 187-246 223-281 (432)
405 cd02024 NRK1 Nicotinamide ribo 94.6 0.021 4.6E-07 53.7 2.5 21 189-209 1-21 (187)
406 COG4618 ArpD ABC-type protease 94.6 0.089 1.9E-06 55.8 7.0 23 187-209 362-384 (580)
407 COG0055 AtpD F0F1-type ATP syn 94.6 0.072 1.6E-06 54.1 6.1 93 187-281 147-252 (468)
408 COG0467 RAD55 RecA-superfamily 94.6 0.039 8.5E-07 55.5 4.5 53 186-244 22-74 (260)
409 COG1066 Sms Predicted ATP-depe 94.6 0.096 2.1E-06 54.2 7.1 86 187-281 93-179 (456)
410 cd01129 PulE-GspE PulE/GspE Th 94.6 0.086 1.9E-06 52.9 6.8 41 169-209 62-102 (264)
411 PF03193 DUF258: Protein of un 94.6 0.05 1.1E-06 49.6 4.5 35 173-210 24-58 (161)
412 cd02028 UMPK_like Uridine mono 94.5 0.031 6.8E-07 52.5 3.3 21 189-209 1-21 (179)
413 PF05970 PIF1: PIF1-like helic 94.5 0.068 1.5E-06 56.6 6.2 36 175-210 10-45 (364)
414 cd00227 CPT Chloramphenicol (C 94.5 0.028 6.1E-07 52.7 3.0 22 188-209 3-24 (175)
415 PHA02774 E1; Provisional 94.5 0.12 2.7E-06 56.3 8.1 36 174-209 420-456 (613)
416 cd01132 F1_ATPase_alpha F1 ATP 94.5 0.098 2.1E-06 52.0 6.8 91 186-281 68-172 (274)
417 PRK05439 pantothenate kinase; 94.5 0.21 4.5E-06 51.0 9.3 46 185-232 84-130 (311)
418 PRK04328 hypothetical protein; 94.5 0.19 4E-06 50.1 8.9 40 187-229 23-62 (249)
419 cd01121 Sms Sms (bacterial rad 94.5 0.12 2.6E-06 54.5 7.8 86 187-280 82-168 (372)
420 PF07726 AAA_3: ATPase family 94.5 0.018 3.8E-07 49.9 1.3 27 190-218 2-28 (131)
421 PRK05917 DNA polymerase III su 94.5 1.2 2.5E-05 45.1 14.4 112 175-306 6-135 (290)
422 PRK00889 adenylylsulfate kinas 94.5 0.036 7.7E-07 52.0 3.6 24 186-209 3-26 (175)
423 TIGR01351 adk adenylate kinase 94.5 0.061 1.3E-06 52.1 5.3 20 190-209 2-21 (210)
424 TIGR03263 guanyl_kin guanylate 94.4 0.03 6.6E-07 52.7 3.1 22 188-209 2-23 (180)
425 cd00984 DnaB_C DnaB helicase C 94.4 0.29 6.2E-06 48.6 10.3 52 187-242 13-64 (242)
426 COG0714 MoxR-like ATPases [Gen 94.4 0.072 1.6E-06 55.6 6.1 64 168-239 26-89 (329)
427 PRK14528 adenylate kinase; Pro 94.4 0.075 1.6E-06 50.3 5.7 22 188-209 2-23 (186)
428 PRK14721 flhF flagellar biosyn 94.4 0.24 5.1E-06 52.8 9.9 87 187-279 191-278 (420)
429 TIGR00041 DTMP_kinase thymidyl 94.4 0.14 3.1E-06 48.8 7.7 23 188-210 4-26 (195)
430 TIGR03305 alt_F1F0_F1_bet alte 94.4 0.099 2.2E-06 55.9 7.0 94 186-281 137-243 (449)
431 COG0378 HypB Ni2+-binding GTPa 94.4 0.099 2.2E-06 48.5 6.1 90 188-280 14-106 (202)
432 KOG0727 26S proteasome regulat 94.4 0.055 1.2E-06 51.7 4.5 44 167-210 156-212 (408)
433 cd02021 GntK Gluconate kinase 94.4 0.027 5.9E-07 51.2 2.5 21 189-209 1-21 (150)
434 PF03205 MobB: Molybdopterin g 94.3 0.034 7.3E-07 49.8 2.9 38 188-228 1-39 (140)
435 TIGR00073 hypB hydrogenase acc 94.3 0.043 9.3E-07 53.0 3.9 30 180-209 15-44 (207)
436 COG1126 GlnQ ABC-type polar am 94.3 0.052 1.1E-06 51.2 4.2 36 187-226 28-63 (240)
437 cd03285 ABC_MSH2_euk MutS2 hom 94.3 0.054 1.2E-06 52.9 4.6 113 186-306 29-153 (222)
438 PRK08927 fliI flagellum-specif 94.3 0.17 3.8E-06 53.9 8.7 90 186-281 157-259 (442)
439 COG0003 ArsA Predicted ATPase 94.3 0.062 1.4E-06 55.0 5.2 49 187-238 2-50 (322)
440 PRK10416 signal recognition pa 94.3 0.14 3.1E-06 52.7 7.9 38 186-226 113-150 (318)
441 COG1936 Predicted nucleotide k 94.3 0.033 7.2E-07 50.5 2.7 20 189-208 2-21 (180)
442 PRK13947 shikimate kinase; Pro 94.3 0.031 6.8E-07 52.1 2.7 21 189-209 3-23 (171)
443 cd00071 GMPK Guanosine monopho 94.3 0.034 7.4E-07 49.7 2.8 21 189-209 1-21 (137)
444 PRK10751 molybdopterin-guanine 94.3 0.039 8.4E-07 51.1 3.2 24 186-209 5-28 (173)
445 cd03243 ABC_MutS_homologs The 94.2 0.089 1.9E-06 50.6 5.8 22 188-209 30-51 (202)
446 COG1124 DppF ABC-type dipeptid 94.2 0.037 8E-07 53.1 3.0 23 187-209 33-55 (252)
447 TIGR02868 CydC thiol reductant 94.2 0.44 9.5E-06 53.4 12.3 25 185-209 359-383 (529)
448 TIGR02030 BchI-ChlI magnesium 94.2 0.051 1.1E-06 56.3 4.3 43 167-209 5-47 (337)
449 PF06309 Torsin: Torsin; Inte 94.2 0.073 1.6E-06 45.9 4.5 44 167-210 26-76 (127)
450 cd01136 ATPase_flagellum-secre 94.2 0.29 6.3E-06 50.3 9.7 90 186-281 68-170 (326)
451 PF12780 AAA_8: P-loop contain 94.2 0.17 3.8E-06 50.6 7.9 94 169-290 11-109 (268)
452 COG0194 Gmk Guanylate kinase [ 94.2 0.042 9.1E-07 50.6 3.2 24 187-210 4-27 (191)
453 cd00820 PEPCK_HprK Phosphoenol 94.2 0.044 9.6E-07 46.1 3.1 22 187-208 15-36 (107)
454 PRK06995 flhF flagellar biosyn 94.2 0.24 5.1E-06 53.7 9.4 88 187-280 256-344 (484)
455 PF00560 LRR_1: Leucine Rich R 94.2 0.019 4.1E-07 33.0 0.6 21 602-622 1-22 (22)
456 cd02020 CMPK Cytidine monophos 94.2 0.032 6.9E-07 50.4 2.5 21 189-209 1-21 (147)
457 PRK00279 adk adenylate kinase; 94.1 0.087 1.9E-06 51.2 5.6 21 189-209 2-22 (215)
458 TIGR00764 lon_rel lon-related 94.1 0.11 2.3E-06 58.7 7.0 75 165-245 17-92 (608)
459 PRK10078 ribose 1,5-bisphospho 94.1 0.039 8.5E-07 52.3 3.1 22 188-209 3-24 (186)
460 COG1703 ArgK Putative periplas 94.1 0.068 1.5E-06 52.9 4.7 60 176-236 38-99 (323)
461 PRK13765 ATP-dependent proteas 94.1 0.085 1.8E-06 59.4 6.1 75 165-245 30-105 (637)
462 PRK00300 gmk guanylate kinase; 94.1 0.043 9.3E-07 52.9 3.4 24 186-209 4-27 (205)
463 PRK10820 DNA-binding transcrip 94.1 0.21 4.5E-06 55.5 9.1 44 166-209 204-249 (520)
464 PRK13407 bchI magnesium chelat 94.1 0.048 1E-06 56.4 3.8 45 165-209 7-51 (334)
465 PRK14723 flhF flagellar biosyn 94.1 0.26 5.7E-06 56.2 9.9 59 187-246 185-244 (767)
466 COG0542 clpA ATP-binding subun 94.1 0.044 9.5E-07 62.0 3.7 147 166-331 170-345 (786)
467 PRK14737 gmk guanylate kinase; 94.0 0.047 1E-06 51.6 3.5 24 186-209 3-26 (186)
468 PF00625 Guanylate_kin: Guanyl 94.0 0.049 1.1E-06 51.5 3.6 31 187-219 2-32 (183)
469 PF08477 Miro: Miro-like prote 94.0 0.041 8.8E-07 47.7 2.8 22 190-211 2-23 (119)
470 PRK14529 adenylate kinase; Pro 94.0 0.18 3.9E-06 48.9 7.5 20 190-209 3-22 (223)
471 PRK08149 ATP synthase SpaL; Va 94.0 0.23 5E-06 52.9 8.8 90 186-281 150-252 (428)
472 PRK05986 cob(I)alamin adenolsy 94.0 0.43 9.4E-06 44.7 9.6 117 187-306 22-158 (191)
473 COG2019 AdkA Archaeal adenylat 94.0 0.046 1E-06 49.1 3.0 23 187-209 4-26 (189)
474 PRK09099 type III secretion sy 94.0 0.22 4.9E-06 53.3 8.8 92 185-281 161-264 (441)
475 COG0529 CysC Adenylylsulfate k 94.0 0.093 2E-06 47.8 4.9 34 181-216 17-50 (197)
476 PF03308 ArgK: ArgK protein; 94.0 0.076 1.6E-06 51.8 4.7 61 174-235 14-76 (266)
477 COG2274 SunT ABC-type bacterio 94.0 0.3 6.5E-06 55.8 10.3 25 185-209 497-521 (709)
478 PRK03846 adenylylsulfate kinas 94.0 0.051 1.1E-06 52.1 3.6 25 185-209 22-46 (198)
479 cd03287 ABC_MSH3_euk MutS3 hom 93.9 0.46 9.9E-06 46.2 10.1 113 186-306 30-154 (222)
480 KOG1532 GTPase XAB1, interacts 93.9 0.05 1.1E-06 52.8 3.3 57 187-246 19-86 (366)
481 PRK05800 cobU adenosylcobinami 93.9 0.16 3.4E-06 47.2 6.6 83 189-279 3-85 (170)
482 CHL00060 atpB ATP synthase CF1 93.9 0.19 4.1E-06 54.2 8.0 54 186-241 160-214 (494)
483 PRK10875 recD exonuclease V su 93.9 0.18 4E-06 56.6 8.3 115 187-303 167-299 (615)
484 PRK09519 recA DNA recombinatio 93.9 0.2 4.2E-06 57.4 8.5 84 187-280 60-148 (790)
485 PF03266 NTPase_1: NTPase; In 93.9 0.042 9.1E-07 50.9 2.7 21 190-210 2-22 (168)
486 PRK13949 shikimate kinase; Pro 93.9 0.044 9.5E-07 51.0 2.9 21 189-209 3-23 (169)
487 PRK13948 shikimate kinase; Pro 93.9 0.052 1.1E-06 51.0 3.3 24 186-209 9-32 (182)
488 PF02374 ArsA_ATPase: Anion-tr 93.8 0.07 1.5E-06 54.7 4.4 47 188-237 2-48 (305)
489 CHL00081 chlI Mg-protoporyphyr 93.8 0.059 1.3E-06 55.9 3.9 45 166-210 17-61 (350)
490 PRK12339 2-phosphoglycerate ki 93.8 0.056 1.2E-06 51.5 3.4 23 187-209 3-25 (197)
491 PRK05922 type III secretion sy 93.7 0.45 9.7E-06 50.8 10.4 90 186-281 156-258 (434)
492 TIGR01313 therm_gnt_kin carboh 93.7 0.04 8.6E-07 51.0 2.3 20 190-209 1-20 (163)
493 cd00464 SK Shikimate kinase (S 93.7 0.048 1E-06 49.8 2.8 20 190-209 2-21 (154)
494 PRK14530 adenylate kinase; Pro 93.7 0.049 1.1E-06 53.0 3.0 22 188-209 4-25 (215)
495 PRK14738 gmk guanylate kinase; 93.7 0.061 1.3E-06 51.9 3.5 24 186-209 12-35 (206)
496 PRK09302 circadian clock prote 93.7 0.38 8.2E-06 53.5 10.3 50 186-239 30-79 (509)
497 PF13086 AAA_11: AAA domain; P 93.6 0.072 1.6E-06 52.3 4.1 21 189-209 19-39 (236)
498 KOG0924 mRNA splicing factor A 93.6 0.32 6.9E-06 53.2 8.9 114 186-306 370-510 (1042)
499 PRK06793 fliI flagellum-specif 93.6 0.32 7E-06 51.9 9.0 92 186-282 155-258 (432)
500 TIGR03497 FliI_clade2 flagella 93.6 0.26 5.7E-06 52.5 8.4 91 185-281 135-238 (413)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=4.6e-74 Score=649.70 Aligned_cols=650 Identities=19% Similarity=0.205 Sum_probs=481.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHhhhHHHHHHHHhhhccCCChHHHHHHHHHHHHHHHHHHhccccc
Q 042541 9 ALLGAVFGELLKAVSEEKDKAVTFKDRLEQLESTLRNSIPWIEEIEKLNQVLDRPKQETENLVRMMEQVEQLVRKCSKVK 88 (695)
Q Consensus 9 a~~~~v~~kl~~~l~~~~~~~~~~~~~l~~L~~~L~~i~~~l~~ae~~~~~~~~~~~wl~~l~~~~~d~ed~ld~~~~~~ 88 (695)
+.++..++++.+.+.+++....+.++.+..|++.|..++++++|++.++........|.+.+++++|+++|.++.|...
T Consensus 3 ~~~s~~~~~~~~~l~~~~~~~~~~~~~i~~Lk~~L~~l~~~l~d~~a~~~~~~~~~~~~e~~~~~~~~~e~~~~~~~v~- 81 (889)
T KOG4658|consen 3 ACVSFGVEKLDQLLNRESECLDGKDNYILELKENLKALQSALEDLDAKRDDLERRVNWEEDVGDLVYLAEDIIWLFLVE- 81 (889)
T ss_pred eEEEEehhhHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 4566678889999999999999999999999999999999999999998888888999999999999999999999862
Q ss_pred hhhhcchhhHHHHHHHHHhhhhHhhccchhhhhhhhhhHHHHHHHHHHHH-hccCCCCCcCCcc-CCccCCCCCCCCCC-
Q 042541 89 WNCFKRYVYAKKIIKLDTSISDFFRTSLPLQHARDGKLIMVEVKEIHTMV-RRMSGNGNINGWM-SNQVGDCCSAPDPP- 165 (695)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~- 165 (695)
...+. ....+.+......+.+-.........++..+..++.++.+.+ .++.+..-..... ..+.......|..+
T Consensus 82 --~~~~~-~~~~l~~~~~~~~~~c~~~~~~~~~~~~~~~~~rv~~~l~~ve~l~~~~~~~~~~~~~~~~~~~e~~~~~~~ 158 (889)
T KOG4658|consen 82 --EIERK-ANDLLSTRSVERQRLCLCGFCSKNVSDSYKYGKRVSKVLREVESLGSKGVFEVVGESLDPREKVETRPIQSE 158 (889)
T ss_pred --HHHHH-HhHHhhhhHHHHHHHhhhhhHhHhhhhhHhHHHHHHHHHHHHHHhccccceecccccccchhhcccCCCCcc
Confidence 21110 111111110011111111233455555666666666666665 4443321111111 11111112222222
Q ss_pred CCCCCCcchHHHHHHHHHcCCceEEEEEcCCCCcHHHHHHHHhcccc-ccccCCCcEEEEEeCCCCCHHHHHHHHHHhcC
Q 042541 166 VISPGLDVPLKELKMELFKDGRQFIVVSAPGGYGKTTLVQRLCKDDQ-VQGKFKDDIFYVTVSKNPNVKAIVQKVLHHKG 244 (695)
Q Consensus 166 ~~~vGr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~-~~~~f~~~~~wv~~~~~~~~~~~~~~i~~~l~ 244 (695)
.. ||.+..++++.+.|..++..+++|+||||+||||||+.++|+.. ++.+|+. ++||.||+.++...++.+|+..++
T Consensus 159 ~~-VG~e~~~~kl~~~L~~d~~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~-~iWV~VSk~f~~~~iq~~Il~~l~ 236 (889)
T KOG4658|consen 159 SD-VGLETMLEKLWNRLMEDDVGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDG-VIWVVVSKEFTTRKIQQTILERLG 236 (889)
T ss_pred cc-ccHHHHHHHHHHHhccCCCCEEEEECCCcccHHHHHHHHhcccchhcccCce-EEEEEEcccccHHhHHHHHHHHhc
Confidence 23 99999999999999988889999999999999999999999977 9999998 889999999999999999999998
Q ss_pred CCCCCCCChHHHHHHHHHHH-HhcCCCcEEEEEeCCCCCChHH--HhhhccCCCCCEEEEEcCCCCCC---C--CCeEec
Q 042541 245 YPVPEFQTDEAAINDLERFF-KQMRIEAILLVLDDVWPGSESL--LQKLGFQLPDYKILVTSRSEFPQ---F--GSVHYL 316 (695)
Q Consensus 245 ~~~~~~~~~~~~~~~l~~~~-~~l~~~~~LlVlDdv~~~~~~~--~~~l~~~~~gs~iivTtR~~~~~---~--~~~~~l 316 (695)
...+...... .+.++..+ +.|+++||+|||||||+..+|. -.+++....||||++|||+..++ + ...+++
T Consensus 237 ~~~~~~~~~~--~~~~~~~i~~~L~~krfllvLDDIW~~~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~~~~~v 314 (889)
T KOG4658|consen 237 LLDEEWEDKE--EDELASKLLNLLEGKRFLLVLDDIWEEVDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVDYPIEV 314 (889)
T ss_pred cCCcccchhh--HHHHHHHHHHHhccCceEEEEecccccccHHhcCCCCCCccCCeEEEEEeccHhhhhccccCCccccc
Confidence 7544322221 14455555 7889999999999999998742 23334444589999999999542 2 348999
Q ss_pred CCCChHHHHHHHHHhccCCCCCCCCCchHHHHHHHHhcCCchhHHHHHHHhhCCC-CHHHHHHHHHHhcCC-CCc-cCch
Q 042541 317 KPLTYEAARTLFLHSANLQDGNSYIPDENIVSKILRACKGCPLALKVVGGSLCGK-HEVFWQRMVKECSRG-ESV-FQSK 393 (695)
Q Consensus 317 ~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~~~~L~~~-~~~~w~~~l~~~~~~-~~~-~~~~ 393 (695)
+.|+++|||+||.+.++.......+..+++|++|+++|+|+|||+.++|+.|+.+ +..+|++++..+... ... .+..
T Consensus 315 ~~L~~~eaW~LF~~~v~~~~~~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~~ 394 (889)
T KOG4658|consen 315 ECLTPEEAWDLFQKKVGPNTLGSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGME 394 (889)
T ss_pred cccCccccHHHHHHhhccccccccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCchh
Confidence 9999999999999999887554444479999999999999999999999999998 578999888766443 111 2235
Q ss_pred hhHHHHHHHHHHhccHHHHHHHhhhcccCCCcccChHHHHHHHHHhhCCChh-------HHHHHHHHHHhhccccchhhc
Q 042541 394 NDILDCLGSSLDVLNNEVKECYLDLCSFPEDQRIPITALIDMWMELYELVDD-------VFAITNLHELSSQNLVDRVVT 466 (695)
Q Consensus 394 ~~i~~~l~~s~~~L~~~~k~cf~~ls~fp~~~~i~~~~Li~~W~~~~~~~~~-------~~~~~~l~~L~~~sLl~~~~~ 466 (695)
+.+..++.+||+.||+++|.||+|||+||+||.|+++.|+.+|+|+|++.+. ++|.+|+++|++++|++....
T Consensus 395 ~~i~~iLklSyd~L~~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~ 474 (889)
T KOG4658|consen 395 ESILPILKLSYDNLPEELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERD 474 (889)
T ss_pred hhhHHhhhccHhhhhHHHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhccc
Confidence 6899999999999999999999999999999999999999999999988662 589999999999999997432
Q ss_pred cccCCCCCCCCCcceehhHHHHHHHHHhccCCCcccccceeeeccCCCCchhhhhccCCCccceEEeeecCCcccCCCCC
Q 042541 467 RKTAGDYGCYNDDFVMQHDLLRELTICRSKSEPINQRKRLVVEISGNNFPKWWMDQKQHPNNASLLSISTDETFSSNWPD 546 (695)
Q Consensus 467 ~~~~~~~~~~~~~~~~mHdlv~~~a~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~~~~~~~~~~~~~~ 546 (695)
.++..+|.|||+|||+|.+++++....... .++..+.+ ..+ ..+.......|++++.+++.. .....
T Consensus 475 --------~~~~~~~kmHDvvRe~al~ias~~~~~~e~-~iv~~~~~-~~~--~~~~~~~~~~rr~s~~~~~~~-~~~~~ 541 (889)
T KOG4658|consen 475 --------EGRKETVKMHDVVREMALWIASDFGKQEEN-QIVSDGVG-LSE--IPQVKSWNSVRRMSLMNNKIE-HIAGS 541 (889)
T ss_pred --------ccceeEEEeeHHHHHHHHHHhccccccccc-eEEECCcC-ccc--cccccchhheeEEEEeccchh-hccCC
Confidence 135678999999999999999943332222 22322111 110 012234467899998876542 23345
Q ss_pred CCCCceEEEEEEccCc-cccCC-hhhcCCCCCcEEEEcccCCCCcccCcccccccCCCCcEEEeccCCCCCcc-cccccc
Q 042541 547 MQGPEVKVVVLNIRTK-KYVLP-DFLQKMDELKVLIVTNYGFSPAELNNFRVLSALSKLKKIRLEHVSLPNSL-ATVRMN 623 (695)
Q Consensus 547 ~~~~~l~~L~l~~~~~-~~~~p-~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~lp-~i~~l~ 623 (695)
..++++++|.+..+.. ...++ ++|..|+.||+|||++|.- ...+ +..+++|-+||||+|+++.++++| ++++|+
T Consensus 542 ~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~-l~~L--P~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk 618 (889)
T KOG4658|consen 542 SENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSS-LSKL--PSSIGELVHLRYLDLSDTGISHLPSGLGNLK 618 (889)
T ss_pred CCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCc-cCcC--ChHHhhhhhhhcccccCCCccccchHHHHHH
Confidence 6788999999988852 34444 4689999999999998533 2333 344899999999999999999999 999999
Q ss_pred cccEEeeccccCCcccccchhhhcccCCCccEEeccccc-cc-ccCchhhcCCCCCceeeccccc
Q 042541 624 HLQKVSLVMCNVGQVFRNSTFRISDAFPNLLEMDIDYCN-DL-IELPDGLCDIVSMEKLRITNCH 686 (695)
Q Consensus 624 ~L~~L~l~~~~i~~~~~~~~~~l~~~l~~L~~L~l~~c~-~l-~~lP~~i~~L~~L~~L~l~~~~ 686 (695)
+|.|||+..+.....++.+.. .|++|++|.+-.-. .. ...=..+.+|.+|+.|.++.++
T Consensus 619 ~L~~Lnl~~~~~l~~~~~i~~----~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s 679 (889)
T KOG4658|consen 619 KLIYLNLEVTGRLESIPGILL----ELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISS 679 (889)
T ss_pred hhheeccccccccccccchhh----hcccccEEEeeccccccchhhHHhhhcccchhhheeecch
Confidence 999999999975555666665 69999999987532 11 1111234555566655555433
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=3.8e-50 Score=480.08 Aligned_cols=481 Identities=17% Similarity=0.232 Sum_probs=332.1
Q ss_pred CCCCCCCCcchHHHHHHHHH--cCCceEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEe---CCC---------
Q 042541 164 PPVISPGLDVPLKELKMELF--KDGRQFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTV---SKN--------- 229 (695)
Q Consensus 164 ~~~~~vGr~~~~~~l~~~L~--~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~---~~~--------- 229 (695)
..+.+|||+..++++..+|. .+++++|+|+||||+||||||+++|+ ++..+|+. .+|+.- +..
T Consensus 182 ~~~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~--~l~~~F~g-~vfv~~~~v~~~~~~~~~~~~ 258 (1153)
T PLN03210 182 DFEDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFS--RLSRQFQS-SVFIDRAFISKSMEIYSSANP 258 (1153)
T ss_pred ccccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHH--HHhhcCCe-EEEeeccccccchhhcccccc
Confidence 34568999999999998886 45689999999999999999999999 78889987 446532 111
Q ss_pred --CC-HHHHHHHHHHhcCCCCCCCCChHHHHHHHHHHHHhcCCCcEEEEEeCCCCCChH--HHhhhccCCCCCEEEEEcC
Q 042541 230 --PN-VKAIVQKVLHHKGYPVPEFQTDEAAINDLERFFKQMRIEAILLVLDDVWPGSES--LLQKLGFQLPDYKILVTSR 304 (695)
Q Consensus 230 --~~-~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~~~LlVlDdv~~~~~~--~~~~l~~~~~gs~iivTtR 304 (695)
.+ ...+..+++..+......... .+..+.+.++++++||||||||+...+ +.....+..+||+||||||
T Consensus 259 ~~~~~~~~l~~~~l~~il~~~~~~~~------~~~~~~~~L~~krvLLVLDdv~~~~~l~~L~~~~~~~~~GsrIIiTTr 332 (1153)
T PLN03210 259 DDYNMKLHLQRAFLSEILDKKDIKIY------HLGAMEERLKHRKVLIFIDDLDDQDVLDALAGQTQWFGSGSRIIVITK 332 (1153)
T ss_pred cccchhHHHHHHHHHHHhCCCCcccC------CHHHHHHHHhCCeEEEEEeCCCCHHHHHHHHhhCccCCCCcEEEEEeC
Confidence 01 123344444443221110000 011222556899999999999986543 2222334468999999999
Q ss_pred CCCC----CCCCeEecCCCChHHHHHHHHHhccCCCCCCCCCchHHHHHHHHhcCCchhHHHHHHHhhCCCCHHHHHHHH
Q 042541 305 SEFP----QFGSVHYLKPLTYEAARTLFLHSANLQDGNSYIPDENIVSKILRACKGCPLALKVVGGSLCGKHEVFWQRMV 380 (695)
Q Consensus 305 ~~~~----~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~~~~L~~~~~~~w~~~l 380 (695)
++.. .....|+++.+++++||+||+++||+... .+....+++++|+++|+|+||||+++|+.|++++.++|+..+
T Consensus 333 d~~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~-~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k~~~~W~~~l 411 (1153)
T PLN03210 333 DKHFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKNS-PPDGFMELASEVALRAGNLPLGLNVLGSYLRGRDKEDWMDML 411 (1153)
T ss_pred cHHHHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCCC-CcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCCCHHHHHHHH
Confidence 9832 23458999999999999999999997644 233467899999999999999999999999999999999999
Q ss_pred HHhcCCCCccCchhhHHHHHHHHHHhccH-HHHHHHhhhcccCCCcccChHHHHHHHHHhhCCChhHHHHHHHHHHhhcc
Q 042541 381 KECSRGESVFQSKNDILDCLGSSLDVLNN-EVKECYLDLCSFPEDQRIPITALIDMWMELYELVDDVFAITNLHELSSQN 459 (695)
Q Consensus 381 ~~~~~~~~~~~~~~~i~~~l~~s~~~L~~-~~k~cf~~ls~fp~~~~i~~~~Li~~W~~~~~~~~~~~~~~~l~~L~~~s 459 (695)
.++... .+..+..+|++||+.|++ ..|.||+++|+|+.+..++ .+..|.+.+..+. +..++.|+++|
T Consensus 412 ~~L~~~-----~~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~---~v~~~l~~~~~~~----~~~l~~L~~ks 479 (1153)
T PLN03210 412 PRLRNG-----LDGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVN---DIKLLLANSDLDV----NIGLKNLVDKS 479 (1153)
T ss_pred HHHHhC-----ccHHHHHHHHHhhhccCccchhhhhheehhhcCCCCHH---HHHHHHHhcCCCc----hhChHHHHhcC
Confidence 887652 245799999999999987 5999999999999887653 4667777665543 34589999999
Q ss_pred ccchhhccccCCCCCCCCCcceehhHHHHHHHHHhccCCC--cccccceeeeccCCCCchhhhhccCCCccceEEeeecC
Q 042541 460 LVDRVVTRKTAGDYGCYNDDFVMQHDLLRELTICRSKSEP--INQRKRLVVEISGNNFPKWWMDQKQHPNNASLLSISTD 537 (695)
Q Consensus 460 Ll~~~~~~~~~~~~~~~~~~~~~mHdlv~~~a~~~~~~e~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~~~~~ 537 (695)
||+.. ...++|||++|++|+.++.++. +.++.+++-. .++..... .......++.+++..+
T Consensus 480 Li~~~-------------~~~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~~~---~di~~vl~-~~~g~~~v~~i~l~~~ 542 (1153)
T PLN03210 480 LIHVR-------------EDIVEMHSLLQEMGKEIVRAQSNEPGEREFLVDA---KDICDVLE-DNTGTKKVLGITLDID 542 (1153)
T ss_pred CEEEc-------------CCeEEhhhHHHHHHHHHHHhhcCCCCcceeEeCH---HHHHHHHH-hCcccceeeEEEeccC
Confidence 99852 1358999999999999987664 2233333211 01111111 1223456677766544
Q ss_pred CcccCCC---CCCCCCceEEEEEEccC------ccccCChhhcCCC-CCcEEEEcccCCCCcccCcccccccCCCCcEEE
Q 042541 538 ETFSSNW---PDMQGPEVKVVVLNIRT------KKYVLPDFLQKMD-ELKVLIVTNYGFSPAELNNFRVLSALSKLKKIR 607 (695)
Q Consensus 538 ~~~~~~~---~~~~~~~l~~L~l~~~~------~~~~~p~~~~~l~-~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~ 607 (695)
+...... ....+++|+.|.+..+. ....+|..+..++ +||+|.+.++... .+ |.-..+.+|+.|+
T Consensus 543 ~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~--~l---P~~f~~~~L~~L~ 617 (1153)
T PLN03210 543 EIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR--CM---PSNFRPENLVKLQ 617 (1153)
T ss_pred ccceeeecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC--CC---CCcCCccCCcEEE
Confidence 3211111 11257778888775431 2345666666654 5888888776432 11 1122456777788
Q ss_pred eccCCCCCcc-cccccccccEEeecccc-CCcccccchhhhcccCCCccEEecccccccccCchhhcCCCCCceeecccc
Q 042541 608 LEHVSLPNSL-ATVRMNHLQKVSLVMCN-VGQVFRNSTFRISDAFPNLLEMDIDYCNDLIELPDGLCDIVSMEKLRITNC 685 (695)
Q Consensus 608 L~~~~l~~lp-~i~~l~~L~~L~l~~~~-i~~~~~~~~~~l~~~l~~L~~L~l~~c~~l~~lP~~i~~L~~L~~L~l~~~ 685 (695)
|.++.+..+| ++..+++|++|+|++|. +..+ |... .+++|++|+|++|..+..+|.++++|++|+.|++++|
T Consensus 618 L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~i-p~ls-----~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c 691 (1153)
T PLN03210 618 MQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEI-PDLS-----MATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRC 691 (1153)
T ss_pred CcCccccccccccccCCCCCEEECCCCCCcCcC-Cccc-----cCCcccEEEecCCCCccccchhhhccCCCCEEeCCCC
Confidence 8777777777 77777778888887764 4443 3333 6777777777777777777777777777777777777
Q ss_pred cCCCCCCCC
Q 042541 686 HRLSALPEG 694 (695)
Q Consensus 686 ~~l~~lP~~ 694 (695)
+.++.+|.+
T Consensus 692 ~~L~~Lp~~ 700 (1153)
T PLN03210 692 ENLEILPTG 700 (1153)
T ss_pred CCcCccCCc
Confidence 777777764
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=2.3e-41 Score=347.78 Aligned_cols=271 Identities=28% Similarity=0.459 Sum_probs=209.1
Q ss_pred CcchHHHHHHHHHc--CCceEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCCCCCHHHHHHHHHHhcCCCCC
Q 042541 171 LDVPLKELKMELFK--DGRQFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSKNPNVKAIVQKVLHHKGYPVP 248 (695)
Q Consensus 171 r~~~~~~l~~~L~~--~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~ 248 (695)
||.++++|.+.|.. ++.++|+|+||||+||||||++++++..++.+|+. ++|++++...+...++..|+.+++....
T Consensus 1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~-v~wv~~~~~~~~~~~~~~i~~~l~~~~~ 79 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDG-VIWVSLSKNPSLEQLLEQILRQLGEPDS 79 (287)
T ss_dssp -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTE-EEEEEEES-SCCHHHHHHHHHHHTCC-S
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeeccccccccccccc-cccccccccccccccccccccccccccc
Confidence 78899999999997 77999999999999999999999997679999976 8999999999999999999999987744
Q ss_pred CC---CChHHHHHHHHHHHHhcCCCcEEEEEeCCCCCChH--HHhhhccCCCCCEEEEEcCCCCCCC-----CCeEecCC
Q 042541 249 EF---QTDEAAINDLERFFKQMRIEAILLVLDDVWPGSES--LLQKLGFQLPDYKILVTSRSEFPQF-----GSVHYLKP 318 (695)
Q Consensus 249 ~~---~~~~~~~~~l~~~~~~l~~~~~LlVlDdv~~~~~~--~~~~l~~~~~gs~iivTtR~~~~~~-----~~~~~l~~ 318 (695)
.. .+.......+. +.+.++++||||||||+...+ +...+.....|++||||||+..... ...+++++
T Consensus 80 ~~~~~~~~~~~~~~l~---~~L~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l~~ 156 (287)
T PF00931_consen 80 SISDPKDIEELQDQLR---ELLKDKRCLLVLDDVWDEEDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIELEP 156 (287)
T ss_dssp TSSCCSSHHHHHHHHH---HHHCCTSEEEEEEEE-SHHHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEECSS
T ss_pred ccccccccccccccch---hhhccccceeeeeeecccccccccccccccccccccccccccccccccccccccccccccc
Confidence 32 22233333333 667889999999999987643 2233344456899999999984321 34799999
Q ss_pred CChHHHHHHHHHhccCCCCCCCCCchHHHHHHHHhcCCchhHHHHHHHhhCCC-CHHHHHHHHHHhcCCCC-ccCchhhH
Q 042541 319 LTYEAARTLFLHSANLQDGNSYIPDENIVSKILRACKGCPLALKVVGGSLCGK-HEVFWQRMVKECSRGES-VFQSKNDI 396 (695)
Q Consensus 319 L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~~~~L~~~-~~~~w~~~l~~~~~~~~-~~~~~~~i 396 (695)
|+.++|++||.+.++..........++.+++|+++|+|+||||+++|++|+.+ +..+|+..++++..... ..+....+
T Consensus 157 L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~ 236 (287)
T PF00931_consen 157 LSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYDRSV 236 (287)
T ss_dssp --HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSCHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999999998876622334457789999999999999999999999654 67889888877654332 12245789
Q ss_pred HHHHHHHHHhccHHHHHHHhhhcccCCCcccChHHHHHHHHHhhCCChh
Q 042541 397 LDCLGSSLDVLNNEVKECYLDLCSFPEDQRIPITALIDMWMELYELVDD 445 (695)
Q Consensus 397 ~~~l~~s~~~L~~~~k~cf~~ls~fp~~~~i~~~~Li~~W~~~~~~~~~ 445 (695)
..++..||+.||+++|+||+|||+||+++.|+.+.|+++|++++++.+.
T Consensus 237 ~~~l~~s~~~L~~~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~~ 285 (287)
T PF00931_consen 237 FSALELSYDSLPDELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISSK 285 (287)
T ss_dssp HHHHHHHHHSSHTCCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC--
T ss_pred cccceechhcCCccHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCccc
Confidence 9999999999999999999999999999999999999999999888753
No 4
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.62 E-value=8.7e-14 Score=166.32 Aligned_cols=297 Identities=14% Similarity=0.179 Sum_probs=187.5
Q ss_pred CCCCCCCCCCCcchHHHHHHHHHcCCceEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeC-CCCCHHHHHHHH
Q 042541 161 APDPPVISPGLDVPLKELKMELFKDGRQFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVS-KNPNVKAIVQKV 239 (695)
Q Consensus 161 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~-~~~~~~~~~~~i 239 (695)
+|..+..+|-|..-.+.+.. ....+++.|+|++|.||||++..+.+. ++. +.|+++. .+.++..+...+
T Consensus 9 ~p~~~~~~~~R~rl~~~l~~---~~~~~~~~v~apaG~GKTtl~~~~~~~------~~~-~~w~~l~~~d~~~~~f~~~l 78 (903)
T PRK04841 9 RPVRLHNTVVRERLLAKLSG---ANNYRLVLVTSPAGYGKTTLISQWAAG------KNN-LGWYSLDESDNQPERFASYL 78 (903)
T ss_pred CCCCccccCcchHHHHHHhc---ccCCCeEEEECCCCCCHHHHHHHHHHh------CCC-eEEEecCcccCCHHHHHHHH
Confidence 44455666777755544432 235789999999999999999998752 233 7899996 445667777777
Q ss_pred HHhcCCCCCCC-C---------ChHHHHHHHHHHHHhcC--CCcEEEEEeCCCCCChH----HHhhhccC-CCCCEEEEE
Q 042541 240 LHHKGYPVPEF-Q---------TDEAAINDLERFFKQMR--IEAILLVLDDVWPGSES----LLQKLGFQ-LPDYKILVT 302 (695)
Q Consensus 240 ~~~l~~~~~~~-~---------~~~~~~~~l~~~~~~l~--~~~~LlVlDdv~~~~~~----~~~~l~~~-~~gs~iivT 302 (695)
+..++...+.. . ........+..++..+. +.+++|||||+...++. .+..+... .++.++|||
T Consensus 79 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~ 158 (903)
T PRK04841 79 IAALQQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVL 158 (903)
T ss_pred HHHHHHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEE
Confidence 77764221111 0 00111122333343332 68999999999776522 33344443 346788899
Q ss_pred cCCCCCC-------CCCeEecC----CCChHHHHHHHHHhccCCCCCCCCCchHHHHHHHHhcCCchhHHHHHHHhhCCC
Q 042541 303 SRSEFPQ-------FGSVHYLK----PLTYEAARTLFLHSANLQDGNSYIPDENIVSKILRACKGCPLALKVVGGSLCGK 371 (695)
Q Consensus 303 tR~~~~~-------~~~~~~l~----~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~~~~L~~~ 371 (695)
||..... .+....+. +|+.+|+.++|....+.. ...+.+.+|.+.|+|+|+++..++..++..
T Consensus 159 sR~~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~~------~~~~~~~~l~~~t~Gwp~~l~l~~~~~~~~ 232 (903)
T PRK04841 159 SRNLPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSSP------IEAAESSRLCDDVEGWATALQLIALSARQN 232 (903)
T ss_pred eCCCCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhccCCC------CCHHHHHHHHHHhCChHHHHHHHHHHHhhC
Confidence 9985321 12244555 999999999998765322 235678899999999999999998776543
Q ss_pred CHHHHHHHHHHhcCCCCccCchhhHHHHHH-HHHHhccHHHHHHHhhhcccCCCcccChHHHHHHHHHhhCCChhHHHHH
Q 042541 372 HEVFWQRMVKECSRGESVFQSKNDILDCLG-SSLDVLNNEVKECYLDLCSFPEDQRIPITALIDMWMELYELVDDVFAIT 450 (695)
Q Consensus 372 ~~~~w~~~l~~~~~~~~~~~~~~~i~~~l~-~s~~~L~~~~k~cf~~ls~fp~~~~i~~~~Li~~W~~~~~~~~~~~~~~ 450 (695)
+... ......+.. .....+...+. ..++.||++.+..+...|+++. ++.+.+-. ..+.+ .+.+
T Consensus 233 ~~~~-~~~~~~~~~-----~~~~~~~~~l~~~v~~~l~~~~~~~l~~~a~~~~---~~~~l~~~------l~~~~-~~~~ 296 (903)
T PRK04841 233 NSSL-HDSARRLAG-----INASHLSDYLVEEVLDNVDLETRHFLLRCSVLRS---MNDALIVR------VTGEE-NGQM 296 (903)
T ss_pred CCch-hhhhHhhcC-----CCchhHHHHHHHHHHhcCCHHHHHHHHHhccccc---CCHHHHHH------HcCCC-cHHH
Confidence 2100 001111110 01234555443 3489999999999999999973 33332211 11222 5678
Q ss_pred HHHHHhhccccchhhccccCCCCCCCCCcceehhHHHHHHHHHhccCC
Q 042541 451 NLHELSSQNLVDRVVTRKTAGDYGCYNDDFVMQHDLLRELTICRSKSE 498 (695)
Q Consensus 451 ~l~~L~~~sLl~~~~~~~~~~~~~~~~~~~~~mHdlv~~~a~~~~~~e 498 (695)
.+++|.+.+++.... ..+..+|++|+++++++......+
T Consensus 297 ~L~~l~~~~l~~~~~---------~~~~~~yr~H~L~r~~l~~~l~~~ 335 (903)
T PRK04841 297 RLEELERQGLFIQRM---------DDSGEWFRYHPLFASFLRHRCQWE 335 (903)
T ss_pred HHHHHHHCCCeeEee---------cCCCCEEehhHHHHHHHHHHHHhc
Confidence 999999999975311 123357899999999998775433
No 5
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=99.53 E-value=1.7e-12 Score=141.25 Aligned_cols=326 Identities=17% Similarity=0.192 Sum_probs=209.7
Q ss_pred CCCCCCCCCCCcchHHHHHHHHHc-CCceEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCC-CCCHHHHHHH
Q 042541 161 APDPPVISPGLDVPLKELKMELFK-DGRQFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSK-NPNVKAIVQK 238 (695)
Q Consensus 161 ~~~~~~~~vGr~~~~~~l~~~L~~-~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~-~~~~~~~~~~ 238 (695)
.|..+...|-|. ++.+.|.. .+.+++.|..|+|.|||||+..+.. +....- .|.|.++++ +.++..+...
T Consensus 14 ~P~~~~~~v~R~----rL~~~L~~~~~~RL~li~APAGfGKttl~aq~~~--~~~~~~--~v~Wlslde~dndp~rF~~y 85 (894)
T COG2909 14 RPVRPDNYVVRP----RLLDRLRRANDYRLILISAPAGFGKTTLLAQWRE--LAADGA--AVAWLSLDESDNDPARFLSY 85 (894)
T ss_pred CCCCcccccccH----HHHHHHhcCCCceEEEEeCCCCCcHHHHHHHHHH--hcCccc--ceeEeecCCccCCHHHHHHH
Confidence 344445556555 56666664 4689999999999999999999875 333332 378999975 4578899999
Q ss_pred HHHhcCCCCCCCCChHH----------HHHHHHHHHHhcC--CCcEEEEEeCCCCCChH----HHhhhc-cCCCCCEEEE
Q 042541 239 VLHHKGYPVPEFQTDEA----------AINDLERFFKQMR--IEAILLVLDDVWPGSES----LLQKLG-FQLPDYKILV 301 (695)
Q Consensus 239 i~~~l~~~~~~~~~~~~----------~~~~l~~~~~~l~--~~~~LlVlDdv~~~~~~----~~~~l~-~~~~gs~iiv 301 (695)
++..++...+...+... ...-+..++..+. .+++++||||..-..+. -+..|. ...++-.+||
T Consensus 86 Li~al~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv 165 (894)
T COG2909 86 LIAALQQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVV 165 (894)
T ss_pred HHHHHHHhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEE
Confidence 99988754443322111 1112233333332 56899999998655432 233333 3445889999
Q ss_pred EcCCCCCCCCC-------eEecC----CCChHHHHHHHHHhccCCCCCCCCCchHHHHHHHHhcCCchhHHHHHHHhhCC
Q 042541 302 TSRSEFPQFGS-------VHYLK----PLTYEAARTLFLHSANLQDGNSYIPDENIVSKILRACKGCPLALKVVGGSLCG 370 (695)
Q Consensus 302 TtR~~~~~~~~-------~~~l~----~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~~~~L~~ 370 (695)
|||+...-.-. .++++ .|+.+|+.++|...... +-.+..++.+.+..+|.+-|+..++=.+++
T Consensus 166 ~SR~rP~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~~l------~Ld~~~~~~L~~~teGW~~al~L~aLa~~~ 239 (894)
T COG2909 166 TSRSRPQLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDRGSL------PLDAADLKALYDRTEGWAAALQLIALALRN 239 (894)
T ss_pred EeccCCCCcccceeehhhHHhcChHhhcCChHHHHHHHHHcCCC------CCChHHHHHHHhhcccHHHHHHHHHHHccC
Confidence 99998532211 33333 68999999999876422 223567899999999999999999888884
Q ss_pred C-CHHHHHHHHHHhcCCCCccCchhhHHH-HHHHHHHhccHHHHHHHhhhcccCCCcccChHHHHHHHHHhhCCChhHHH
Q 042541 371 K-HEVFWQRMVKECSRGESVFQSKNDILD-CLGSSLDVLNNEVKECYLDLCSFPEDQRIPITALIDMWMELYELVDDVFA 448 (695)
Q Consensus 371 ~-~~~~w~~~l~~~~~~~~~~~~~~~i~~-~l~~s~~~L~~~~k~cf~~ls~fp~~~~i~~~~Li~~W~~~~~~~~~~~~ 448 (695)
. +.+.- +..+.. ....+.. ...-.++.||+++|..++.||+++.- -..|+..- ... +.+
T Consensus 240 ~~~~~q~---~~~LsG------~~~~l~dYL~eeVld~Lp~~l~~FLl~~svl~~f----~~eL~~~L-----tg~-~ng 300 (894)
T COG2909 240 NTSAEQS---LRGLSG------AASHLSDYLVEEVLDRLPPELRDFLLQTSVLSRF----NDELCNAL-----TGE-ENG 300 (894)
T ss_pred CCcHHHH---hhhccc------hHHHHHHHHHHHHHhcCCHHHHHHHHHHHhHHHh----hHHHHHHH-----hcC-CcH
Confidence 3 33221 111111 1122222 34557899999999999999999752 13343321 122 267
Q ss_pred HHHHHHHhhccccchhhccccCCCCCCCCCcceehhHHHHHHHHHhccCCCcccccceeeeccCCCCchhhhhccCCCcc
Q 042541 449 ITNLHELSSQNLVDRVVTRKTAGDYGCYNDDFVMQHDLLRELTICRSKSEPINQRKRLVVEISGNNFPKWWMDQKQHPNN 528 (695)
Q Consensus 449 ~~~l~~L~~~sLl~~~~~~~~~~~~~~~~~~~~~mHdlv~~~a~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 528 (695)
...+++|.+++|+-..- ..+..+|+.|.++.||.+.....+.......+. ....+||.+..-....
T Consensus 301 ~amLe~L~~~gLFl~~L---------dd~~~WfryH~LFaeFL~~r~~~~~~~~~~~lH-----~~Aa~w~~~~g~~~eA 366 (894)
T COG2909 301 QAMLEELERRGLFLQRL---------DDEGQWFRYHHLFAEFLRQRLQRELAARLKELH-----RAAAEWFAEHGLPSEA 366 (894)
T ss_pred HHHHHHHHhCCCceeee---------cCCCceeehhHHHHHHHHhhhccccCCchhHHH-----HHHHHHHHhCCChHHH
Confidence 78999999999887522 345689999999999999887775443211111 1235688766555555
Q ss_pred ceEEe
Q 042541 529 ASLLS 533 (695)
Q Consensus 529 ~r~l~ 533 (695)
+.|..
T Consensus 367 I~hAl 371 (894)
T COG2909 367 IDHAL 371 (894)
T ss_pred HHHHH
Confidence 55543
No 6
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.38 E-value=1.2e-14 Score=127.66 Aligned_cols=156 Identities=19% Similarity=0.217 Sum_probs=122.8
Q ss_pred cceEEeeecCCcccCCCCCCCCCceEEEEEEccCccccCChhhcCCCCCcEEEEcccCCCCcccCcccccccCCCCcEEE
Q 042541 528 NASLLSISTDETFSSNWPDMQGPEVKVVVLNIRTKKYVLPDFLQKMDELKVLIVTNYGFSPAELNNFRVLSALSKLKKIR 607 (695)
Q Consensus 528 ~~r~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~p~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~ 607 (695)
.+-++.+++++...-.+--.++.+|++|.+..+ ....+|.+++.+++||.|++.-|.+. . .+..+|+++-|++|+
T Consensus 34 ~ITrLtLSHNKl~~vppnia~l~nlevln~~nn-qie~lp~~issl~klr~lnvgmnrl~--~--lprgfgs~p~levld 108 (264)
T KOG0617|consen 34 NITRLTLSHNKLTVVPPNIAELKNLEVLNLSNN-QIEELPTSISSLPKLRILNVGMNRLN--I--LPRGFGSFPALEVLD 108 (264)
T ss_pred hhhhhhcccCceeecCCcHHHhhhhhhhhcccc-hhhhcChhhhhchhhhheecchhhhh--c--CccccCCCchhhhhh
Confidence 344555555443222222236778888887655 44678889999999999998876542 1 122388999999999
Q ss_pred eccCCCC--Ccc-cccccccccEEeeccccCCcccccchhhhcccCCCccEEecccccccccCchhhcCCCCCceeeccc
Q 042541 608 LEHVSLP--NSL-ATVRMNHLQKVSLVMCNVGQVFRNSTFRISDAFPNLLEMDIDYCNDLIELPDGLCDIVSMEKLRITN 684 (695)
Q Consensus 608 L~~~~l~--~lp-~i~~l~~L~~L~l~~~~i~~~~~~~~~~l~~~l~~L~~L~l~~c~~l~~lP~~i~~L~~L~~L~l~~ 684 (695)
|..|++. .+| .+..|..|+-|.|+.|.+.-+|+++. +|++||.|.+..| .+-++|..+|.|+.|+.|++++
T Consensus 109 ltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg-----~lt~lqil~lrdn-dll~lpkeig~lt~lrelhiqg 182 (264)
T KOG0617|consen 109 LTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVG-----KLTNLQILSLRDN-DLLSLPKEIGDLTRLRELHIQG 182 (264)
T ss_pred ccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhh-----hhcceeEEeeccC-chhhCcHHHHHHHHHHHHhccc
Confidence 9999986 789 88889999999999999999999888 8999999999995 6789999999999999999999
Q ss_pred ccCCCCCCCCC
Q 042541 685 CHRLSALPEGI 695 (695)
Q Consensus 685 ~~~l~~lP~~i 695 (695)
| .+..+|+++
T Consensus 183 n-rl~vlppel 192 (264)
T KOG0617|consen 183 N-RLTVLPPEL 192 (264)
T ss_pred c-eeeecChhh
Confidence 5 599999874
No 7
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.31 E-value=1e-09 Score=116.82 Aligned_cols=288 Identities=15% Similarity=0.103 Sum_probs=166.5
Q ss_pred CCCCCCCcchHHHHHHHHHc----CCceEEEEEcCCCCcHHHHHHHHhccccc-ccc--CCCcEEEEEeCCCCCHHHHHH
Q 042541 165 PVISPGLDVPLKELKMELFK----DGRQFIVVSAPGGYGKTTLVQRLCKDDQV-QGK--FKDDIFYVTVSKNPNVKAIVQ 237 (695)
Q Consensus 165 ~~~~vGr~~~~~~l~~~L~~----~~~~vv~I~G~gGiGKTtLa~~~~~~~~~-~~~--f~~~~~wv~~~~~~~~~~~~~ 237 (695)
|+.++||+.++++|..+|.. ...+.+.|+|++|+|||++++.+++...- ... ....++|+++....+...++.
T Consensus 14 p~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~~~ 93 (365)
T TIGR02928 14 PDRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQVLV 93 (365)
T ss_pred CCCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHHHH
Confidence 45789999999999999872 34568999999999999999999974211 011 113366888888778889999
Q ss_pred HHHHhcC---CCCCCC-CChHHHHHHHHHHHHhcCCCcEEEEEeCCCCCC---hHHHhhhcc-----CCCC--CEEEEEc
Q 042541 238 KVLHHKG---YPVPEF-QTDEAAINDLERFFKQMRIEAILLVLDDVWPGS---ESLLQKLGF-----QLPD--YKILVTS 303 (695)
Q Consensus 238 ~i~~~l~---~~~~~~-~~~~~~~~~l~~~~~~l~~~~~LlVlDdv~~~~---~~~~~~l~~-----~~~g--s~iivTt 303 (695)
.|+.++. ...+.. .+..+....+...+.. .+++++||||+++... ...+..+.. ..++ ..+|.+|
T Consensus 94 ~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~lI~i~ 172 (365)
T TIGR02928 94 ELANQLRGSGEEVPTTGLSTSEVFRRLYKELNE-RGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGVIGIS 172 (365)
T ss_pred HHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHh-cCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEEEEEE
Confidence 9999883 322211 1222222333322211 3668999999997662 222222211 1222 3444444
Q ss_pred CCCC----------CCC-CCeEecCCCChHHHHHHHHHhccCCC--CCCCCCchHHHHHHHHhcCCchhHHHHHH-Hhh-
Q 042541 304 RSEF----------PQF-GSVHYLKPLTYEAARTLFLHSANLQD--GNSYIPDENIVSKILRACKGCPLALKVVG-GSL- 368 (695)
Q Consensus 304 R~~~----------~~~-~~~~~l~~L~~~ea~~Lf~~~~~~~~--~~~~~~~~~~~~~I~~~c~G~PLai~~~~-~~L- 368 (695)
.... ... ...+.+++++.++..+++..++.... ........+.+..++..+.|.|..+..+. .+.
T Consensus 173 n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l~~a~~ 252 (365)
T TIGR02928 173 NDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDLLRVAGE 252 (365)
T ss_pred CCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 3321 011 23688999999999999998764211 11111122344556667778875443222 111
Q ss_pred ---C-CC---CHHHHHHHHHHhcCCCCccCchhhHHHHHHHHHHhccHHHHHHHhhhcccC--CCcccChHHHHHHHH--
Q 042541 369 ---C-GK---HEVFWQRMVKECSRGESVFQSKNDILDCLGSSLDVLNNEVKECYLDLCSFP--EDQRIPITALIDMWM-- 437 (695)
Q Consensus 369 ---~-~~---~~~~w~~~l~~~~~~~~~~~~~~~i~~~l~~s~~~L~~~~k~cf~~ls~fp--~~~~i~~~~Li~~W~-- 437 (695)
. +. +.+..+.++... -.....-++..||.+.+..+..++..- ++..+....+...+-
T Consensus 253 ~a~~~~~~~it~~~v~~a~~~~------------~~~~~~~~i~~l~~~~~~~l~ai~~~~~~~~~~~~~~~~~~~y~~~ 320 (365)
T TIGR02928 253 IAEREGAERVTEDHVEKAQEKI------------EKDRLLELIRGLPTHSKLVLLAIANLAANDEDPFRTGEVYEVYKEV 320 (365)
T ss_pred HHHHcCCCCCCHHHHHHHHHHH------------HHHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHH
Confidence 1 11 233333333321 123344567889988886665544221 344466666666443
Q ss_pred -HhhCCChh--HHHHHHHHHHhhccccchhh
Q 042541 438 -ELYELVDD--VFAITNLHELSSQNLVDRVV 465 (695)
Q Consensus 438 -~~~~~~~~--~~~~~~l~~L~~~sLl~~~~ 465 (695)
....+.+- ....++++.|...|||+...
T Consensus 321 ~~~~~~~~~~~~~~~~~l~~l~~~gli~~~~ 351 (365)
T TIGR02928 321 CEDIGVDPLTQRRISDLLNELDMLGLVEAEE 351 (365)
T ss_pred HHhcCCCCCcHHHHHHHHHHHHhcCCeEEEE
Confidence 22122111 47889999999999999744
No 8
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.31 E-value=8.9e-10 Score=118.50 Aligned_cols=286 Identities=14% Similarity=0.131 Sum_probs=168.3
Q ss_pred CCCCCCCCcchHHHHHHHHH----cCCceEEEEEcCCCCcHHHHHHHHhccccccccC-CCcEEEEEeCCCCCHHHHHHH
Q 042541 164 PPVISPGLDVPLKELKMELF----KDGRQFIVVSAPGGYGKTTLVQRLCKDDQVQGKF-KDDIFYVTVSKNPNVKAIVQK 238 (695)
Q Consensus 164 ~~~~~vGr~~~~~~l~~~L~----~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f-~~~~~wv~~~~~~~~~~~~~~ 238 (695)
.|+.++||++++++|...|. ......+.|+|++|+|||++++.++++ ..... ...++++++....+...++..
T Consensus 28 ~P~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~--l~~~~~~~~~v~in~~~~~~~~~~~~~ 105 (394)
T PRK00411 28 VPENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEE--LEEIAVKVVYVYINCQIDRTRYAIFSE 105 (394)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHH--HHHhcCCcEEEEEECCcCCCHHHHHHH
Confidence 45678999999999999885 234567889999999999999999984 32222 223567777777788899999
Q ss_pred HHHhcCCC-CCC-CCChHHHHHHHHHHHHhcCCCcEEEEEeCCCCCC----hHHHhhhc---cCCCCCE--EEEEcCCCC
Q 042541 239 VLHHKGYP-VPE-FQTDEAAINDLERFFKQMRIEAILLVLDDVWPGS----ESLLQKLG---FQLPDYK--ILVTSRSEF 307 (695)
Q Consensus 239 i~~~l~~~-~~~-~~~~~~~~~~l~~~~~~l~~~~~LlVlDdv~~~~----~~~~~~l~---~~~~gs~--iivTtR~~~ 307 (695)
++.++... .+. ..+.......+...+.. .++..+||||+++... ...+..+. ...++++ +|.++....
T Consensus 106 i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~~~~~~v~vI~i~~~~~ 184 (394)
T PRK00411 106 IARQLFGHPPPSSGLSFDELFDKIAEYLDE-RDRVLIVALDDINYLFEKEGNDVLYSLLRAHEEYPGARIGVIGISSDLT 184 (394)
T ss_pred HHHHhcCCCCCCCCCCHHHHHHHHHHHHHh-cCCEEEEEECCHhHhhccCCchHHHHHHHhhhccCCCeEEEEEEECCcc
Confidence 99998752 221 11223333333333321 3567899999997643 22222221 1223433 455544331
Q ss_pred -----------CCCCCeEecCCCChHHHHHHHHHhccCCCCCCCCCchHHHHHHHHhc----CCchhHHHHHHHhh----
Q 042541 308 -----------PQFGSVHYLKPLTYEAARTLFLHSANLQDGNSYIPDENIVSKILRAC----KGCPLALKVVGGSL---- 368 (695)
Q Consensus 308 -----------~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c----~G~PLai~~~~~~L---- 368 (695)
......+.+++++.++..+++..++...... ..-..+.++.|++.+ |..+.|+.++-.+.
T Consensus 185 ~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~-~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~ 263 (394)
T PRK00411 185 FLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYP-GVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAE 263 (394)
T ss_pred hhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhccc-CCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH
Confidence 0112367899999999999998876432111 111234455555554 55777777664321
Q ss_pred -CCC---CHHHHHHHHHHhcCCCCccCchhhHHHHHHHHHHhccHHHHHHHhhhcccC--CCcccChHHHHHHHHH---h
Q 042541 369 -CGK---HEVFWQRMVKECSRGESVFQSKNDILDCLGSSLDVLNNEVKECYLDLCSFP--EDQRIPITALIDMWME---L 439 (695)
Q Consensus 369 -~~~---~~~~w~~~l~~~~~~~~~~~~~~~i~~~l~~s~~~L~~~~k~cf~~ls~fp--~~~~i~~~~Li~~W~~---~ 439 (695)
++. +.+....++... -.....-.+..||.+.|..+..++..- +...+....+...-.. .
T Consensus 264 ~~~~~~I~~~~v~~a~~~~------------~~~~~~~~~~~L~~~~k~~L~ai~~~~~~~~~~~~~~~i~~~y~~l~~~ 331 (394)
T PRK00411 264 REGSRKVTEEDVRKAYEKS------------EIVHLSEVLRTLPLHEKLLLRAIVRLLKKGGDEVTTGEVYEEYKELCEE 331 (394)
T ss_pred HcCCCCcCHHHHHHHHHHH------------HHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHH
Confidence 111 234444344332 122345568899998887766554332 1133555555433221 1
Q ss_pred hCCCh--hHHHHHHHHHHhhccccchhh
Q 042541 440 YELVD--DVFAITNLHELSSQNLVDRVV 465 (695)
Q Consensus 440 ~~~~~--~~~~~~~l~~L~~~sLl~~~~ 465 (695)
..+.+ .....+++++|...|+|+...
T Consensus 332 ~~~~~~~~~~~~~~l~~L~~~glI~~~~ 359 (394)
T PRK00411 332 LGYEPRTHTRFYEYINKLDMLGIINTRY 359 (394)
T ss_pred cCCCcCcHHHHHHHHHHHHhcCCeEEEE
Confidence 12222 136778999999999998643
No 9
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.29 E-value=8.3e-12 Score=150.27 Aligned_cols=142 Identities=16% Similarity=0.164 Sum_probs=86.5
Q ss_pred CCCceEEEEEEccCccccCChhh-cCCCCCcEEEEcccCCCCcc-------------------cCcccccccCCCCcEEE
Q 042541 548 QGPEVKVVVLNIRTKKYVLPDFL-QKMDELKVLIVTNYGFSPAE-------------------LNNFRVLSALSKLKKIR 607 (695)
Q Consensus 548 ~~~~l~~L~l~~~~~~~~~p~~~-~~l~~Lr~L~l~~~~~~~~~-------------------~~~~~~l~~l~~L~~L~ 607 (695)
.+++|+.|.|+.+...+.+|..+ ..+++|++|++++|.+.... -..+..++++++|++|+
T Consensus 91 ~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~ 170 (968)
T PLN00113 91 RLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLD 170 (968)
T ss_pred CCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCEEE
Confidence 44555555555554444455432 25555555555554432100 00112356677777777
Q ss_pred eccCCCC-Ccc-cccccccccEEeeccccCCcccccchhhhcccCCCccEEecccccccccCchhhcCCCCCceeecccc
Q 042541 608 LEHVSLP-NSL-ATVRMNHLQKVSLVMCNVGQVFRNSTFRISDAFPNLLEMDIDYCNDLIELPDGLCDIVSMEKLRITNC 685 (695)
Q Consensus 608 L~~~~l~-~lp-~i~~l~~L~~L~l~~~~i~~~~~~~~~~l~~~l~~L~~L~l~~c~~l~~lP~~i~~L~~L~~L~l~~~ 685 (695)
|++|.+. .+| .++++++|++|+|++|.+....|..+. .+++|++|++++|...+.+|..++++++|++|++++|
T Consensus 171 L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~----~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n 246 (968)
T PLN00113 171 LGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELG----QMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYN 246 (968)
T ss_pred CccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHc----CcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCc
Confidence 7777765 566 777777777777777776655554444 6777777777777666677777777777777777777
Q ss_pred cCCCCCCC
Q 042541 686 HRLSALPE 693 (695)
Q Consensus 686 ~~l~~lP~ 693 (695)
+..+.+|.
T Consensus 247 ~l~~~~p~ 254 (968)
T PLN00113 247 NLTGPIPS 254 (968)
T ss_pred eeccccCh
Confidence 65556664
No 10
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.23 E-value=1.7e-11 Score=147.61 Aligned_cols=139 Identities=17% Similarity=0.190 Sum_probs=82.2
Q ss_pred CCCceEEEEEEccCccccCChhhcCCCCCcEEEEcccCCCCcccCcccccccCCCCcEEEeccCCCC-Ccc-cccccccc
Q 042541 548 QGPEVKVVVLNIRTKKYVLPDFLQKMDELKVLIVTNYGFSPAELNNFRVLSALSKLKKIRLEHVSLP-NSL-ATVRMNHL 625 (695)
Q Consensus 548 ~~~~l~~L~l~~~~~~~~~p~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~-~lp-~i~~l~~L 625 (695)
.+++|++|.++.|...+.+|..++++++|++|++++|.+... + +..++.+++|++|++++|.+. .+| .++++++|
T Consensus 186 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~-~--p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L 262 (968)
T PLN00113 186 NLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGE-I--PYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNL 262 (968)
T ss_pred hCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCc-C--ChhHhcCCCCCEEECcCceeccccChhHhCCCCC
Confidence 455566666655555555565666666666666665544211 1 122556666666666666665 555 66666666
Q ss_pred cEEeeccccCCcccccchhhhcccCCCccEEecccccccccCchhhcCCCCCceeecccccCCCCCCC
Q 042541 626 QKVSLVMCNVGQVFRNSTFRISDAFPNLLEMDIDYCNDLIELPDGLCDIVSMEKLRITNCHRLSALPE 693 (695)
Q Consensus 626 ~~L~l~~~~i~~~~~~~~~~l~~~l~~L~~L~l~~c~~l~~lP~~i~~L~~L~~L~l~~~~~l~~lP~ 693 (695)
++|++++|.+.+..|..+. .+++|++|++++|...+.+|..++++++|+.|++++|...+.+|.
T Consensus 263 ~~L~L~~n~l~~~~p~~l~----~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~ 326 (968)
T PLN00113 263 QYLFLYQNKLSGPIPPSIF----SLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPV 326 (968)
T ss_pred CEEECcCCeeeccCchhHh----hccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCCh
Confidence 6666666666544443333 566677777776655556666667777777777776665444443
No 11
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.23 E-value=5e-11 Score=118.36 Aligned_cols=189 Identities=20% Similarity=0.250 Sum_probs=100.1
Q ss_pred CCCCcchHHHHHHHHHcCCceEEEEEcCCCCcHHHHHHHHhccccccc-cCCCcEEEEEeCCCCCHHHHHHH--------
Q 042541 168 SPGLDVPLKELKMELFKDGRQFIVVSAPGGYGKTTLVQRLCKDDQVQG-KFKDDIFYVTVSKNPNVKAIVQK-------- 238 (695)
Q Consensus 168 ~vGr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~-~f~~~~~wv~~~~~~~~~~~~~~-------- 238 (695)
|+||+.++++|.+++..+..+.+.|+|+.|+|||+|++.+.+ ..+. .+ . ++|+...+......+...
T Consensus 1 F~gR~~el~~l~~~l~~~~~~~~~l~G~rg~GKTsLl~~~~~--~~~~~~~-~-~~y~~~~~~~~~~~~~~~~~~~~~~~ 76 (234)
T PF01637_consen 1 FFGREKELEKLKELLESGPSQHILLYGPRGSGKTSLLKEFIN--ELKEKGY-K-VVYIDFLEESNESSLRSFIEETSLAD 76 (234)
T ss_dssp S-S-HHHHHHHHHCHHH--SSEEEEEESTTSSHHHHHHHHHH--HCT--EE-C-CCHHCCTTBSHHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHhhcCcEEEEEcCCcCCHHHHHHHHHH--HhhhcCC-c-EEEEecccchhhhHHHHHHHHHHHHH
Confidence 799999999999999887788999999999999999999998 3422 22 2 345555444332221111
Q ss_pred -HHHhcCCCCCC----------CCChHHHHHHHHHHHHhcCCCcEEEEEeCCCCCC------hHHHhhh----cc--CCC
Q 042541 239 -VLHHKGYPVPE----------FQTDEAAINDLERFFKQMRIEAILLVLDDVWPGS------ESLLQKL----GF--QLP 295 (695)
Q Consensus 239 -i~~~l~~~~~~----------~~~~~~~~~~l~~~~~~l~~~~~LlVlDdv~~~~------~~~~~~l----~~--~~~ 295 (695)
+.+.+....+. ..........+...+.. .+++++||+||+.... ......+ .. ...
T Consensus 77 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~-~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 155 (234)
T PF01637_consen 77 ELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKK-KGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQ 155 (234)
T ss_dssp HCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHH-CHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----T
T ss_pred HHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHh-cCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhccccC
Confidence 11112111110 01112223333333322 3445999999985544 1211111 11 122
Q ss_pred C-CEEEEEcCCC---------CC--CCCCeEecCCCChHHHHHHHHHhccCCCCCCCCCchHHHHHHHHhcCCchhHHHH
Q 042541 296 D-YKILVTSRSE---------FP--QFGSVHYLKPLTYEAARTLFLHSANLQDGNSYIPDENIVSKILRACKGCPLALKV 363 (695)
Q Consensus 296 g-s~iivTtR~~---------~~--~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~ 363 (695)
+ +.|+++|... .. .....+.+++|+.+++++++....... ... ....+..++|+..+||+|..|..
T Consensus 156 ~~~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~-~~~-~~~~~~~~~i~~~~gG~P~~l~~ 233 (234)
T PF01637_consen 156 NVSIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKEL-IKL-PFSDEDIEEIYSLTGGNPRYLQE 233 (234)
T ss_dssp TEEEEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC--------HHHHHHHHHHHTT-HHHHHH
T ss_pred CceEEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHh-hcc-cCCHHHHHHHHHHhCCCHHHHhc
Confidence 3 4444444421 11 111269999999999999999865433 211 12466789999999999998764
No 12
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.21 E-value=1.3e-09 Score=110.78 Aligned_cols=188 Identities=22% Similarity=0.270 Sum_probs=119.5
Q ss_pred HHHHHHHH---cCCceEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCCCCCHHHHHHHHHHhcCCCCCCCCC
Q 042541 176 KELKMELF---KDGRQFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSKNPNVKAIVQKVLHHKGYPVPEFQT 252 (695)
Q Consensus 176 ~~l~~~L~---~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~ 252 (695)
+++...+. ..+.+++.|+|++|+|||||++.+++.... . ...+.|+ +....+..+++..++..++.+... ..
T Consensus 29 ~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~~~l~~~l~~-~--~~~~~~~-~~~~~~~~~~l~~i~~~lG~~~~~-~~ 103 (269)
T TIGR03015 29 KRAMAYLEYGLSQREGFILITGEVGAGKTTLIRNLLKRLDQ-E--RVVAAKL-VNTRVDAEDLLRMVAADFGLETEG-RD 103 (269)
T ss_pred HHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHhcCC-C--CeEEeee-eCCCCCHHHHHHHHHHHcCCCCCC-CC
Confidence 34444443 344578999999999999999999984221 1 1112233 233457778999999998775432 22
Q ss_pred hHHHHHHHHHHH-H-hcCCCcEEEEEeCCCCCChHHHhhh---ccC----CCCCEEEEEcCCCC----C---------CC
Q 042541 253 DEAAINDLERFF-K-QMRIEAILLVLDDVWPGSESLLQKL---GFQ----LPDYKILVTSRSEF----P---------QF 310 (695)
Q Consensus 253 ~~~~~~~l~~~~-~-~l~~~~~LlVlDdv~~~~~~~~~~l---~~~----~~gs~iivTtR~~~----~---------~~ 310 (695)
.......+...+ . ...+++.++|+||++......+..+ ... .....|++|..... . ..
T Consensus 104 ~~~~~~~l~~~l~~~~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~~~~~l~~~~~~~l~~r~ 183 (269)
T TIGR03015 104 KAALLRELEDFLIEQFAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPEFRETLQSPQLQQLRQRI 183 (269)
T ss_pred HHHHHHHHHHHHHHHHhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHHHHHHHcCchhHHHHhhe
Confidence 233344454444 2 2368889999999998775433332 221 12235556654331 0 11
Q ss_pred CCeEecCCCChHHHHHHHHHhccCCCCCCC-CCchHHHHHHHHhcCCchhHHHHHHHhh
Q 042541 311 GSVHYLKPLTYEAARTLFLHSANLQDGNSY-IPDENIVSKILRACKGCPLALKVVGGSL 368 (695)
Q Consensus 311 ~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~-~~~~~~~~~I~~~c~G~PLai~~~~~~L 368 (695)
...+.+++++.+|..+++...+........ .-..+..+.|++.|+|.|..|..++..+
T Consensus 184 ~~~~~l~~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 184 IASCHLGPLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred eeeeeCCCCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 236789999999999999877643322111 1246889999999999999999988764
No 13
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.18 E-value=1.8e-09 Score=111.85 Aligned_cols=264 Identities=15% Similarity=0.102 Sum_probs=145.1
Q ss_pred CCCCCcchHHHHHHHHH-----cCCceEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCCCCCHHHHHHHHHH
Q 042541 167 ISPGLDVPLKELKMELF-----KDGRQFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSKNPNVKAIVQKVLH 241 (695)
Q Consensus 167 ~~vGr~~~~~~l~~~L~-----~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~~~~~~~~~~~i~~ 241 (695)
.|||++..+++|..++. ......+.++|++|+|||+||+.+++ ..... ...+..+.......+ ...+.
T Consensus 5 ~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~--~~~~~----~~~~~~~~~~~~~~l-~~~l~ 77 (305)
T TIGR00635 5 EFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIAN--EMGVN----LKITSGPALEKPGDL-AAILT 77 (305)
T ss_pred HHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHH--HhCCC----EEEeccchhcCchhH-HHHHH
Confidence 57999999999988887 23356788999999999999999988 33222 222222211122222 22223
Q ss_pred hcCCCC----CCCC-ChHHHHHHHHHHHHhcCCCcEEEEEeCCCCCChHHHhhhccCCC-CCEEEEEcCCCCC------C
Q 042541 242 HKGYPV----PEFQ-TDEAAINDLERFFKQMRIEAILLVLDDVWPGSESLLQKLGFQLP-DYKILVTSRSEFP------Q 309 (695)
Q Consensus 242 ~l~~~~----~~~~-~~~~~~~~l~~~~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~~~-gs~iivTtR~~~~------~ 309 (695)
.++... ++.. -.....+.+. ..+.+.+..+|+|+..+... +....+ .+-|..||+.... .
T Consensus 78 ~~~~~~vl~iDEi~~l~~~~~e~l~---~~~~~~~~~~v~~~~~~~~~-----~~~~~~~~~li~~t~~~~~l~~~l~sR 149 (305)
T TIGR00635 78 NLEEGDVLFIDEIHRLSPAVEELLY---PAMEDFRLDIVIGKGPSARS-----VRLDLPPFTLVGATTRAGMLTSPLRDR 149 (305)
T ss_pred hcccCCEEEEehHhhhCHHHHHHhh---HHHhhhheeeeeccCccccc-----eeecCCCeEEEEecCCccccCHHHHhh
Confidence 332111 0000 0001111111 33344455566665433321 111112 3445556665421 2
Q ss_pred CCCeEecCCCChHHHHHHHHHhccCCCCCCCCCchHHHHHHHHhcCCchhHHHHHHHhhCCCCHHHHHHHHHHhcCCCCc
Q 042541 310 FGSVHYLKPLTYEAARTLFLHSANLQDGNSYIPDENIVSKILRACKGCPLALKVVGGSLCGKHEVFWQRMVKECSRGESV 389 (695)
Q Consensus 310 ~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~~~~L~~~~~~~w~~~l~~~~~~~~~ 389 (695)
.+..+.+++++.++..+++.+.+..... .-.++.+..|++.|+|.|..+..++..+ |. ..........
T Consensus 150 ~~~~~~l~~l~~~e~~~il~~~~~~~~~---~~~~~al~~ia~~~~G~pR~~~~ll~~~-------~~--~a~~~~~~~i 217 (305)
T TIGR00635 150 FGIILRLEFYTVEELAEIVSRSAGLLNV---EIEPEAALEIARRSRGTPRIANRLLRRV-------RD--FAQVRGQKII 217 (305)
T ss_pred cceEEEeCCCCHHHHHHHHHHHHHHhCC---CcCHHHHHHHHHHhCCCcchHHHHHHHH-------HH--HHHHcCCCCc
Confidence 3447899999999999999988764322 2246778999999999997765554422 11 1000110000
Q ss_pred c-CchhhHHHHHHHHHHhccHHHHHHHh-hhcccCCCcccChHHHHHHHHHhhCCChhHHHHHHHH-HHhhccccch
Q 042541 390 F-QSKNDILDCLGSSLDVLNNEVKECYL-DLCSFPEDQRIPITALIDMWMELYELVDDVFAITNLH-ELSSQNLVDR 463 (695)
Q Consensus 390 ~-~~~~~i~~~l~~s~~~L~~~~k~cf~-~ls~fp~~~~i~~~~Li~~W~~~~~~~~~~~~~~~l~-~L~~~sLl~~ 463 (695)
. +.-......+...|..|+++.+..+. .++.++.+ .+..+.+... -..+.. .++..++ .|++++||+.
T Consensus 218 t~~~v~~~l~~l~~~~~~l~~~~~~~L~al~~~~~~~-~~~~~~ia~~----lg~~~~-~~~~~~e~~Li~~~li~~ 288 (305)
T TIGR00635 218 NRDIALKALEMLMIDELGLDEIDRKLLSVLIEQFQGG-PVGLKTLAAA----LGEDAD-TIEDVYEPYLLQIGFLQR 288 (305)
T ss_pred CHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhCCC-cccHHHHHHH----hCCCcc-hHHHhhhHHHHHcCCccc
Confidence 0 00012222245567788888777666 45666544 4444444332 234443 7888888 6999999974
No 14
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.17 E-value=1.2e-12 Score=115.15 Aligned_cols=138 Identities=19% Similarity=0.260 Sum_probs=113.3
Q ss_pred CCCCceEEEEEEccCccccCChhhcCCCCCcEEEEcccCCCCcccCcccccccCCCCcEEEeccCCCCCcc-cccccccc
Q 042541 547 MQGPEVKVVVLNIRTKKYVLPDFLQKMDELKVLIVTNYGFSPAELNNFRVLSALSKLKKIRLEHVSLPNSL-ATVRMNHL 625 (695)
Q Consensus 547 ~~~~~l~~L~l~~~~~~~~~p~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~lp-~i~~l~~L 625 (695)
+++++++.|.|+.+.. ..+|+.+..+.+|.+|++++|++. . .+.++++|+.|+.|++.-|.+..+| ++|.++-|
T Consensus 30 f~~s~ITrLtLSHNKl-~~vppnia~l~nlevln~~nnqie--~--lp~~issl~klr~lnvgmnrl~~lprgfgs~p~l 104 (264)
T KOG0617|consen 30 FNMSNITRLTLSHNKL-TVVPPNIAELKNLEVLNLSNNQIE--E--LPTSISSLPKLRILNVGMNRLNILPRGFGSFPAL 104 (264)
T ss_pred cchhhhhhhhcccCce-eecCCcHHHhhhhhhhhcccchhh--h--cChhhhhchhhhheecchhhhhcCccccCCCchh
Confidence 3556677777766643 566778999999999999998773 2 2345899999999999999999999 99999999
Q ss_pred cEEeeccccCCc-ccccchhhhcccCCCccEEecccccccccCchhhcCCCCCceeecccccCCCCCCCCC
Q 042541 626 QKVSLVMCNVGQ-VFRNSTFRISDAFPNLLEMDIDYCNDLIELPDGLCDIVSMEKLRITNCHRLSALPEGI 695 (695)
Q Consensus 626 ~~L~l~~~~i~~-~~~~~~~~l~~~l~~L~~L~l~~c~~l~~lP~~i~~L~~L~~L~l~~~~~l~~lP~~i 695 (695)
+.|||+.|++.. ..|+.|. .++.|+.|+|++| ...-+|..+|+|++|+.|.+++|. +-++|.+|
T Consensus 105 evldltynnl~e~~lpgnff----~m~tlralyl~dn-dfe~lp~dvg~lt~lqil~lrdnd-ll~lpkei 169 (264)
T KOG0617|consen 105 EVLDLTYNNLNENSLPGNFF----YMTTLRALYLGDN-DFEILPPDVGKLTNLQILSLRDND-LLSLPKEI 169 (264)
T ss_pred hhhhccccccccccCCcchh----HHHHHHHHHhcCC-CcccCChhhhhhcceeEEeeccCc-hhhCcHHH
Confidence 999999997643 3344443 8999999999994 689999999999999999999966 77888753
No 15
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.13 E-value=4e-09 Score=109.97 Aligned_cols=272 Identities=17% Similarity=0.138 Sum_probs=147.1
Q ss_pred CCCCCCCCCCcchHHHHHHHHH-----cCCceEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCCCCCHHHHH
Q 042541 162 PDPPVISPGLDVPLKELKMELF-----KDGRQFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSKNPNVKAIV 236 (695)
Q Consensus 162 ~~~~~~~vGr~~~~~~l~~~L~-----~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~~~~~~~~~ 236 (695)
|..-..|+|++..++.+..++. ......+.|+|++|+|||+||+.+++. .... +.++..+.... ...+
T Consensus 21 P~~~~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~--l~~~----~~~~~~~~~~~-~~~l 93 (328)
T PRK00080 21 PKSLDEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANE--MGVN----IRITSGPALEK-PGDL 93 (328)
T ss_pred cCCHHHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHH--hCCC----eEEEecccccC-hHHH
Confidence 3344568999999999987776 223567899999999999999999983 3221 22332221111 1122
Q ss_pred HHHHHhcCCCCCC-CCChHHHHHHHHHHH-HhcCCCcEEEEEeCCCCCChHHHhhhccCCCC-CEEEEEcCCCCC-----
Q 042541 237 QKVLHHKGYPVPE-FQTDEAAINDLERFF-KQMRIEAILLVLDDVWPGSESLLQKLGFQLPD-YKILVTSRSEFP----- 308 (695)
Q Consensus 237 ~~i~~~l~~~~~~-~~~~~~~~~~l~~~~-~~l~~~~~LlVlDdv~~~~~~~~~~l~~~~~g-s~iivTtR~~~~----- 308 (695)
..++..+....-- .++.+.......+.+ ..+.+.+..+++|+..+... +....++ +-|..|++....
T Consensus 94 ~~~l~~l~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~~-----~~~~l~~~~li~at~~~~~l~~~L~ 168 (328)
T PRK00080 94 AAILTNLEEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAARS-----IRLDLPPFTLIGATTRAGLLTSPLR 168 (328)
T ss_pred HHHHHhcccCCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCccccc-----eeecCCCceEEeecCCcccCCHHHH
Confidence 2333332211000 000000000011111 22233344444444322211 1111233 344556664421
Q ss_pred -CCCCeEecCCCChHHHHHHHHHhccCCCCCCCCCchHHHHHHHHhcCCchhHHHHHHHhhCCCCHHHHHHHHHHhcCCC
Q 042541 309 -QFGSVHYLKPLTYEAARTLFLHSANLQDGNSYIPDENIVSKILRACKGCPLALKVVGGSLCGKHEVFWQRMVKECSRGE 387 (695)
Q Consensus 309 -~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~~~~L~~~~~~~w~~~l~~~~~~~ 387 (695)
..+..+.+++++.++..+++.+.+..... .-.++.+..|++.|+|.|..+..+...+ ..|. ... ...
T Consensus 169 sRf~~~~~l~~~~~~e~~~il~~~~~~~~~---~~~~~~~~~ia~~~~G~pR~a~~~l~~~-----~~~a-~~~---~~~ 236 (328)
T PRK00080 169 DRFGIVQRLEFYTVEELEKIVKRSARILGV---EIDEEGALEIARRSRGTPRIANRLLRRV-----RDFA-QVK---GDG 236 (328)
T ss_pred HhcCeeeecCCCCHHHHHHHHHHHHHHcCC---CcCHHHHHHHHHHcCCCchHHHHHHHHH-----HHHH-HHc---CCC
Confidence 13457899999999999999988765332 1246789999999999997555554422 1221 110 000
Q ss_pred Ccc-CchhhHHHHHHHHHHhccHHHHHHHh-hhcccCCCcccChHHHHHHHHHhhCCChhHHHHHHHH-HHhhccccch
Q 042541 388 SVF-QSKNDILDCLGSSLDVLNNEVKECYL-DLCSFPEDQRIPITALIDMWMELYELVDDVFAITNLH-ELSSQNLVDR 463 (695)
Q Consensus 388 ~~~-~~~~~i~~~l~~s~~~L~~~~k~cf~-~ls~fp~~~~i~~~~Li~~W~~~~~~~~~~~~~~~l~-~L~~~sLl~~ 463 (695)
... ..-......+...+..|++..+..+. ....|+.+ .+..+.+.... ..+.+ .+++.++ .|++.+||+.
T Consensus 237 ~I~~~~v~~~l~~~~~~~~~l~~~~~~~l~~~~~~~~~~-~~~~~~~a~~l----g~~~~-~~~~~~e~~Li~~~li~~ 309 (328)
T PRK00080 237 VITKEIADKALDMLGVDELGLDEMDRKYLRTIIEKFGGG-PVGLDTLAAAL----GEERD-TIEDVYEPYLIQQGFIQR 309 (328)
T ss_pred CCCHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHcCCC-ceeHHHHHHHH----CCCcc-hHHHHhhHHHHHcCCccc
Confidence 000 00112334445566788888777775 66677765 45555553322 33333 6777888 9999999975
No 16
>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots. Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].
Probab=99.08 E-value=6.3e-09 Score=92.73 Aligned_cols=138 Identities=48% Similarity=0.762 Sum_probs=128.3
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHhhhHHHHHHHHhhhccCCC-hHHHHHHHHHHHHHHH
Q 042541 1 MAAAFVGGALLGAVFGELLKAVSEEKDKAVTFKDRLEQLESTLRNSIPWIEEIEKLNQVLDRP-KQETENLVRMMEQVEQ 79 (695)
Q Consensus 1 Ma~~~v~~a~~~~v~~kl~~~l~~~~~~~~~~~~~l~~L~~~L~~i~~~l~~ae~~~~~~~~~-~~wl~~l~~~~~d~ed 79 (695)
|.+++++||+++.+++.+...+.+..+....++.-+++|..+++.|..++++++..+...+.. +.-+++|.+...++++
T Consensus 1 ~~~eL~~gaalG~~~~eLlk~v~~~~~k~~~fk~~l~~L~sTl~~i~P~i~eI~~~~~eld~~~~ee~e~L~~~L~~g~~ 80 (147)
T PF05659_consen 1 PIAELVGGAALGAVFGELLKAVIDASKKSLSFKSILKRLESTLESIIPIIKEIDKLNVELDRPRQEEIERLKELLEKGKE 80 (147)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHH
Confidence 677889999999999999999999999999999999999999999999999999988777766 8999999999999999
Q ss_pred HHHhccccc-hhhhcchhhHHHHHHHHHhhhhHhhccchhhhhhhhhhHHHHHHHHHHHH
Q 042541 80 LVRKCSKVK-WNCFKRYVYAKKIIKLDTSISDFFRTSLPLQHARDGKLIMVEVKEIHTMV 138 (695)
Q Consensus 80 ~ld~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~ 138 (695)
++..|...+ |.+.+.+.|.+++.++...+.+|+....+.+..++++++...+.++...+
T Consensus 81 LV~k~sk~~r~n~~kk~~y~~Ki~~le~~l~~f~~v~~q~~~~~D~~~l~~~~~e~~~kl 140 (147)
T PF05659_consen 81 LVEKCSKVRRWNLYKKPRYARKIEELEESLRRFIQVDLQLHQLRDIKELLAKMSEMNTKL 140 (147)
T ss_pred HHHHhccccHHHHHhhHhHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999874 47889999999999999999999999999999999999999999887765
No 17
>COG3903 Predicted ATPase [General function prediction only]
Probab=99.07 E-value=6.9e-10 Score=112.44 Aligned_cols=289 Identities=18% Similarity=0.197 Sum_probs=201.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCCCCCHHHHHHHHHHhcCCCCCCCCChHHHHHHHHHHHHh
Q 042541 187 RQFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSKNPNVKAIVQKVLHHKGYPVPEFQTDEAAINDLERFFKQ 266 (695)
Q Consensus 187 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~~ 266 (695)
.+.+.++|.|||||||++-.+.+ +...|..++.++......+...+.-.+...++....+ .+.....+ ...
T Consensus 14 ~RlvtL~g~ggvgkttl~~~~a~---~~~~~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~~~---g~~~~~~~---~~~ 84 (414)
T COG3903 14 LRLVTLTGAGGVGKTTLALQAAH---AASEYADGVAFVDLAPITDPALVFPTLAGALGLHVQP---GDSAVDTL---VRR 84 (414)
T ss_pred hheeeeeccCccceehhhhhhHh---HhhhcccceeeeeccccCchhHhHHHHHhhccccccc---chHHHHHH---HHH
Confidence 58899999999999999988875 7788988887888887777777777777778776433 12222222 244
Q ss_pred cCCCcEEEEEeCCCCCChH---HHhhhccCCCCCEEEEEcCCCCCCCCC-eEecCCCChH-HHHHHHHHhccCCCCC--C
Q 042541 267 MRIEAILLVLDDVWPGSES---LLQKLGFQLPDYKILVTSRSEFPQFGS-VHYLKPLTYE-AARTLFLHSANLQDGN--S 339 (695)
Q Consensus 267 l~~~~~LlVlDdv~~~~~~---~~~~l~~~~~gs~iivTtR~~~~~~~~-~~~l~~L~~~-ea~~Lf~~~~~~~~~~--~ 339 (695)
..+++.++|+||.....+. ....+..+.+.-.++.|+|......+. .+.+++|+.. ++.++|...+.....+ .
T Consensus 85 ~~~rr~llvldncehl~~~~a~~i~all~~~~~~~~~atsre~~l~~ge~~~~~~~L~~~d~a~~lf~~ra~~~~~~f~l 164 (414)
T COG3903 85 IGDRRALLVLDNCEHLLDACAALIVALLGACPRLAILATSREAILVAGEVHRRVPSLSLFDEAIELFVCRAVLVALSFWL 164 (414)
T ss_pred HhhhhHHHHhcCcHHHHHHHHHHHHHHHccchhhhhHHHhHhhhcccccccccCCccccCCchhHHHHHHHHHhccceee
Confidence 4688999999997544322 344555566777899999988655554 7788888876 7999988766544332 2
Q ss_pred CCCchHHHHHHHHhcCCchhHHHHHHHhhCCCCHHH----HHHHHHHhcCCCC-ccCchhhHHHHHHHHHHhccHHHHHH
Q 042541 340 YIPDENIVSKILRACKGCPLALKVVGGSLCGKHEVF----WQRMVKECSRGES-VFQSKNDILDCLGSSLDVLNNEVKEC 414 (695)
Q Consensus 340 ~~~~~~~~~~I~~~c~G~PLai~~~~~~L~~~~~~~----w~~~l~~~~~~~~-~~~~~~~i~~~l~~s~~~L~~~~k~c 414 (695)
.......+.+|.+..+|.|++|..+++..+.-...+ .......+..... ...........+.+||.-|..-.+..
T Consensus 165 ~~~~~a~v~~icr~ldg~~laielaaarv~sl~~~~i~~~L~drf~ll~~~~r~a~~~~qtl~asl~ws~~lLtgwe~~~ 244 (414)
T COG3903 165 TDDNAAAVAEICRRLDGIPLAIELAAARVRSLSPDEIAAGLRDRFRLLTGGARLAVLRQQTLRASLDWSYALLTGWERAL 244 (414)
T ss_pred cCCchHHHHHHHHHhhcchHHHHHHHHHHHhcCHHHHHHHHhhHHHHHhcccccchhHHHhccchhhhhhHhhhhHHHHH
Confidence 233567899999999999999999999888754322 2222222322211 11233467889999999999999999
Q ss_pred HhhhcccCCCcccChHHHHHHHHHhhCCC--hhHHHHHHHHHHhhccccchhhccccCCCCCCCCCcceehhHHHHHHHH
Q 042541 415 YLDLCSFPEDQRIPITALIDMWMELYELV--DDVFAITNLHELSSQNLVDRVVTRKTAGDYGCYNDDFVMQHDLLRELTI 492 (695)
Q Consensus 415 f~~ls~fp~~~~i~~~~Li~~W~~~~~~~--~~~~~~~~l~~L~~~sLl~~~~~~~~~~~~~~~~~~~~~mHdlv~~~a~ 492 (695)
|..++.|...+... ...|.+.+... +.......+..|++.+++.... ..+...|+.-+-+|.|+.
T Consensus 245 ~~rLa~~~g~f~~~----l~~~~a~g~~~~~~~y~~~~a~~ll~~kslv~a~~---------~~~~a~~Rl~eT~r~Yal 311 (414)
T COG3903 245 FGRLAVFVGGFDLG----LALAVAAGADVDVPRYLVLLALTLLVDKSLVVALD---------LLGRARYRLLETGRRYAL 311 (414)
T ss_pred hcchhhhhhhhccc----HHHHHhcCCccccchHHHHHHHHHHhhccchhhhh---------hhhHHHHHHHHHHHHHHH
Confidence 99999999877644 34555544322 1146777888999999987633 233456777788888886
Q ss_pred HhccC
Q 042541 493 CRSKS 497 (695)
Q Consensus 493 ~~~~~ 497 (695)
.+..+
T Consensus 312 aeL~r 316 (414)
T COG3903 312 AELHR 316 (414)
T ss_pred HHHHh
Confidence 65443
No 18
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.01 E-value=5.4e-08 Score=107.52 Aligned_cols=286 Identities=15% Similarity=0.098 Sum_probs=156.5
Q ss_pred CCCCCCCCcchHHHHHHHHH----cCC-ceEEEEEcCCCCcHHHHHHHHhccccc---cccCC-CcEEEEEeCCCCCHHH
Q 042541 164 PPVISPGLDVPLKELKMELF----KDG-RQFIVVSAPGGYGKTTLVQRLCKDDQV---QGKFK-DDIFYVTVSKNPNVKA 234 (695)
Q Consensus 164 ~~~~~vGr~~~~~~l~~~L~----~~~-~~vv~I~G~gGiGKTtLa~~~~~~~~~---~~~f~-~~~~wv~~~~~~~~~~ 234 (695)
.|+.++||++|+++|...|. ..+ ..++.|+|++|.|||+.++.|.+...- ....+ ..+++|++....+...
T Consensus 753 VPD~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~s 832 (1164)
T PTZ00112 753 VPKYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNA 832 (1164)
T ss_pred CCCcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHH
Confidence 35678999999999998887 222 357789999999999999999873211 11222 3467888887788888
Q ss_pred HHHHHHHhcCCCCCCCCChHHHHHHHHHHHHhc---CCCcEEEEEeCCCCCC---hH-HHhhhcc-CCCCCEEEE--EcC
Q 042541 235 IVQKVLHHKGYPVPEFQTDEAAINDLERFFKQM---RIEAILLVLDDVWPGS---ES-LLQKLGF-QLPDYKILV--TSR 304 (695)
Q Consensus 235 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~~l---~~~~~LlVlDdv~~~~---~~-~~~~l~~-~~~gs~iiv--TtR 304 (695)
++..|.+++....+.. .......+.+++..+ .+...+||||+++... +. +..-+.+ ...+++|+| +|.
T Consensus 833 IYqvI~qqL~g~~P~~--GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~s~SKLiLIGISN 910 (1164)
T PTZ00112 833 AYQVLYKQLFNKKPPN--ALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTKINSKLVLIAISN 910 (1164)
T ss_pred HHHHHHHHHcCCCCCc--cccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhhccCCeEEEEEecC
Confidence 9999998885443321 112223444555433 2334699999986543 22 2222322 234566554 332
Q ss_pred CC-C---------CCCC-CeEecCCCChHHHHHHHHHhccCCCCCCC-CCchHHHHHHHHhcCCchhHHHHHHHhhCCC-
Q 042541 305 SE-F---------PQFG-SVHYLKPLTYEAARTLFLHSANLQDGNSY-IPDENIVSKILRACKGCPLALKVVGGSLCGK- 371 (695)
Q Consensus 305 ~~-~---------~~~~-~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~-~~~~~~~~~I~~~c~G~PLai~~~~~~L~~~- 371 (695)
.. . ...+ ..+...|++.++-.+++..++........ ...+-+|+.++...|..-.||.++-.+....
T Consensus 911 dlDLperLdPRLRSRLg~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDARKALDILRrAgEike 990 (1164)
T PTZ00112 911 TMDLPERLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIRKALQICRKAFENKR 990 (1164)
T ss_pred chhcchhhhhhhhhccccccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHHHHHHHHHhhcC
Confidence 21 0 0111 24677999999999999988764321111 1112233333444455666766665444321
Q ss_pred ----CHHHHHHHHHHhcCCCCccCchhhHHHHHHHHHHhccHHHHHHHhhhcccCC---CcccChHHHHHHHHH--h--h
Q 042541 372 ----HEVFWQRMVKECSRGESVFQSKNDILDCLGSSLDVLNNEVKECYLDLCSFPE---DQRIPITALIDMWME--L--Y 440 (695)
Q Consensus 372 ----~~~~w~~~l~~~~~~~~~~~~~~~i~~~l~~s~~~L~~~~k~cf~~ls~fp~---~~~i~~~~Li~~W~~--~--~ 440 (695)
..+.-+.++.+. ....+.-....||.+.|-.+..+...-+ ...++...+...... + |
T Consensus 991 gskVT~eHVrkAleei------------E~srI~e~IktLPlHqKLVLlALIlLlk~tg~~~i~TGEVYerYk~Lce~~G 1058 (1164)
T PTZ00112 991 GQKIVPRDITEATNQL------------FDSPLTNAINYLPWPFKMFLTCLIVELRMLNDFIIPYKKVLNRYKVLVETSG 1058 (1164)
T ss_pred CCccCHHHHHHHHHHH------------HhhhHHHHHHcCCHHHHHHHHHHHHHHhhcCCCceeHHHHHHHHHHHHHhhh
Confidence 111111122111 1122344567889887765553332211 223555554443321 1 1
Q ss_pred ---CCChh-HHHHHHHHHHhhccccch
Q 042541 441 ---ELVDD-VFAITNLHELSSQNLVDR 463 (695)
Q Consensus 441 ---~~~~~-~~~~~~l~~L~~~sLl~~ 463 (695)
.+.+. ....+++.+|...|+|-.
T Consensus 1059 k~iGv~plTqRV~d~L~eL~~LGIIl~ 1085 (1164)
T PTZ00112 1059 KYIGMCSNNELFKIMLDKLVKMGILLI 1085 (1164)
T ss_pred hhcCCCCcHHHHHHHHHHHHhcCeEEe
Confidence 11111 245566777777776654
No 19
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.01 E-value=1.9e-11 Score=127.65 Aligned_cols=136 Identities=14% Similarity=0.246 Sum_probs=87.9
Q ss_pred CCceEEEEEEcc-CccccCChhhcCCCCCcEEEEcccCCCCcccCcccccccCCCCcEEEeccCCCCCcc-ccccccccc
Q 042541 549 GPEVKVVVLNIR-TKKYVLPDFLQKMDELKVLIVTNYGFSPAELNNFRVLSALSKLKKIRLEHVSLPNSL-ATVRMNHLQ 626 (695)
Q Consensus 549 ~~~l~~L~l~~~-~~~~~~p~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~lp-~i~~l~~L~ 626 (695)
+.+|.+|.+++. .....+|.++.+|.||+.+|++.|++. .+ +..+-++.+|+.|+|++|.|+.+. .++...+|+
T Consensus 196 mtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp--~v--Pecly~l~~LrrLNLS~N~iteL~~~~~~W~~lE 271 (1255)
T KOG0444|consen 196 MTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP--IV--PECLYKLRNLRRLNLSGNKITELNMTEGEWENLE 271 (1255)
T ss_pred chhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC--cc--hHHHhhhhhhheeccCcCceeeeeccHHHHhhhh
Confidence 344555555554 334567777888888888888776551 11 223567777888888888777777 777777777
Q ss_pred EEeeccccCCcccccchhhhcccCCCccEEeccccc-ccccCchhhcCCCCCceeecccccCCCCCCCC
Q 042541 627 KVSLVMCNVGQVFRNSTFRISDAFPNLLEMDIDYCN-DLIELPDGLCDIVSMEKLRITNCHRLSALPEG 694 (695)
Q Consensus 627 ~L~l~~~~i~~~~~~~~~~l~~~l~~L~~L~l~~c~-~l~~lP~~i~~L~~L~~L~l~~~~~l~~lP~~ 694 (695)
+|++|.|+++.+|.-.+ +|++|+.|.+.+|. ...-+|++||+|.+|+.+...+| ++.-+|++
T Consensus 272 tLNlSrNQLt~LP~avc-----KL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN-~LElVPEg 334 (1255)
T KOG0444|consen 272 TLNLSRNQLTVLPDAVC-----KLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANN-KLELVPEG 334 (1255)
T ss_pred hhccccchhccchHHHh-----hhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhcc-ccccCchh
Confidence 77777777777665544 66667766666543 23346666666666666666663 36666654
No 20
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.01 E-value=2e-11 Score=127.40 Aligned_cols=130 Identities=15% Similarity=0.201 Sum_probs=77.5
Q ss_pred CCceEEEEEEccCccccCChhhcCCCCCcEEEEcccCCCCcccCcccccccCCCCcEEEeccCCCCCcc-cccccccccE
Q 042541 549 GPEVKVVVLNIRTKKYVLPDFLQKMDELKVLIVTNYGFSPAELNNFRVLSALSKLKKIRLEHVSLPNSL-ATVRMNHLQK 627 (695)
Q Consensus 549 ~~~l~~L~l~~~~~~~~~p~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~lp-~i~~l~~L~~ 627 (695)
+.+|+.|.++.|.. ..+...++.++.||.++++.|++....++ +.+..|..|..|+|++|.+.+.| .+.+-+++-.
T Consensus 54 lqkLEHLs~~HN~L-~~vhGELs~Lp~LRsv~~R~N~LKnsGiP--~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iV 130 (1255)
T KOG0444|consen 54 LQKLEHLSMAHNQL-ISVHGELSDLPRLRSVIVRDNNLKNSGIP--TDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIV 130 (1255)
T ss_pred Hhhhhhhhhhhhhh-HhhhhhhccchhhHHHhhhccccccCCCC--chhcccccceeeecchhhhhhcchhhhhhcCcEE
Confidence 34444444433322 22233455566666666666655433332 22556666666666666666666 6666666666
Q ss_pred EeeccccCCcccccchhhhcccCCCccEEecccccccccCchhhcCCCCCceeeccccc
Q 042541 628 VSLVMCNVGQVFRNSTFRISDAFPNLLEMDIDYCNDLIELPDGLCDIVSMEKLRITNCH 686 (695)
Q Consensus 628 L~l~~~~i~~~~~~~~~~l~~~l~~L~~L~l~~c~~l~~lP~~i~~L~~L~~L~l~~~~ 686 (695)
|+||+|+|..+|.+.+. +|+.|-.|||++ +.+..+|+.+..|.+|++|.|++|+
T Consensus 131 LNLS~N~IetIPn~lfi----nLtDLLfLDLS~-NrLe~LPPQ~RRL~~LqtL~Ls~NP 184 (1255)
T KOG0444|consen 131 LNLSYNNIETIPNSLFI----NLTDLLFLDLSN-NRLEMLPPQIRRLSMLQTLKLSNNP 184 (1255)
T ss_pred EEcccCccccCCchHHH----hhHhHhhhcccc-chhhhcCHHHHHHhhhhhhhcCCCh
Confidence 66666666666666665 666666666666 3566666666666666666666665
No 21
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.99 E-value=2.3e-09 Score=129.75 Aligned_cols=59 Identities=10% Similarity=0.084 Sum_probs=36.6
Q ss_pred ccceEEeeecCCcccCCCCCCCCCceEEEEEEccCccccCChhhcCCCCCcEEEEcccC
Q 042541 527 NNASLLSISTDETFSSNWPDMQGPEVKVVVLNIRTKKYVLPDFLQKMDELKVLIVTNYG 585 (695)
Q Consensus 527 ~~~r~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~p~~~~~l~~Lr~L~l~~~~ 585 (695)
...+.+.+.........+....+++|+.|.+.++.....+|..+..+++|+.|++++|.
T Consensus 634 ~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~ 692 (1153)
T PLN03210 634 TGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCE 692 (1153)
T ss_pred CCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCC
Confidence 34555555443222222222356777777777776667777777888888888887753
No 22
>PF05729 NACHT: NACHT domain
Probab=98.96 E-value=6.7e-09 Score=97.00 Aligned_cols=136 Identities=20% Similarity=0.303 Sum_probs=85.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcccccccc----CCCcEEEEEeCCCCCHH---HHHHHHHHhcCCCCCCCCChHHHHHHH
Q 042541 188 QFIVVSAPGGYGKTTLVQRLCKDDQVQGK----FKDDIFYVTVSKNPNVK---AIVQKVLHHKGYPVPEFQTDEAAINDL 260 (695)
Q Consensus 188 ~vv~I~G~gGiGKTtLa~~~~~~~~~~~~----f~~~~~wv~~~~~~~~~---~~~~~i~~~l~~~~~~~~~~~~~~~~l 260 (695)
+++.|+|.+|+||||+++.++..-..... +.. ++|++.+...... .+...|..+...... .....+
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~------~~~~~~ 73 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPY-PFFFSLRDISDSNNSRSLADLLFDQLPESIA------PIEELL 73 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceE-EEEEeehhhhhccccchHHHHHHHhhccchh------hhHHHH
Confidence 58999999999999999999874222222 233 6677776544332 344444444332211 111112
Q ss_pred HHHHHhcCCCcEEEEEeCCCCCChH-----------HHhhhccC--CCCCEEEEEcCCCCC-------CCCCeEecCCCC
Q 042541 261 ERFFKQMRIEAILLVLDDVWPGSES-----------LLQKLGFQ--LPDYKILVTSRSEFP-------QFGSVHYLKPLT 320 (695)
Q Consensus 261 ~~~~~~l~~~~~LlVlDdv~~~~~~-----------~~~~l~~~--~~gs~iivTtR~~~~-------~~~~~~~l~~L~ 320 (695)
...+. ..+++++|+|++++.... .+..+... .+++++|||+|.... .....+.+.+|+
T Consensus 74 ~~~~~--~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~ 151 (166)
T PF05729_consen 74 QELLE--KNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFS 151 (166)
T ss_pred HHHHH--cCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCC
Confidence 22222 578999999998665431 23333333 568999999998732 122479999999
Q ss_pred hHHHHHHHHHhc
Q 042541 321 YEAARTLFLHSA 332 (695)
Q Consensus 321 ~~ea~~Lf~~~~ 332 (695)
+++..+++.++.
T Consensus 152 ~~~~~~~~~~~f 163 (166)
T PF05729_consen 152 EEDIKQYLRKYF 163 (166)
T ss_pred HHHHHHHHHHHh
Confidence 999999998764
No 23
>PTZ00202 tuzin; Provisional
Probab=98.90 E-value=3.7e-06 Score=86.74 Aligned_cols=163 Identities=15% Similarity=0.101 Sum_probs=106.7
Q ss_pred CCCCCCCCCCCCCCcchHHHHHHHHHcC---CceEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCCCCCHHH
Q 042541 158 CCSAPDPPVISPGLDVPLKELKMELFKD---GRQFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSKNPNVKA 234 (695)
Q Consensus 158 ~~~~~~~~~~~vGr~~~~~~l~~~L~~~---~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~~~~~~~ 234 (695)
....|..+..|+||+.++.++...|.+. ..+++.|+|++|+|||||++.+... .. +. .++++.. +..+
T Consensus 254 ~~~lPa~~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~--l~--~~--qL~vNpr---g~eE 324 (550)
T PTZ00202 254 LQSAPAVIRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRK--EG--MP--AVFVDVR---GTED 324 (550)
T ss_pred ccCCCCCccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhc--CC--ce--EEEECCC---CHHH
Confidence 4567778889999999999999988632 2568999999999999999999863 22 21 3344444 6799
Q ss_pred HHHHHHHhcCCCCCCCCChHHHHHHHHHHHH--hc-CCCcEEEEEeCCCCCC-hH---HHhhhccCCCCCEEEEEcCCCC
Q 042541 235 IVQKVLHHKGYPVPEFQTDEAAINDLERFFK--QM-RIEAILLVLDDVWPGS-ES---LLQKLGFQLPDYKILVTSRSEF 307 (695)
Q Consensus 235 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~--~l-~~~~~LlVlDdv~~~~-~~---~~~~l~~~~~gs~iivTtR~~~ 307 (695)
++..++.+||.+.. ....+....+++.+. .. ++++.+||+-==...+ .. ..-.+.+...-|+|++---.+.
T Consensus 325 lLr~LL~ALGV~p~--~~k~dLLrqIqeaLl~~~~e~GrtPVLII~lreg~~l~rvyne~v~la~drr~ch~v~evples 402 (550)
T PTZ00202 325 TLRSVVKALGVPNV--EACGDLLDFISEACRRAKKMNGETPLLVLKLREGSSLQRVYNEVVALACDRRLCHVVIEVPLES 402 (550)
T ss_pred HHHHHHHHcCCCCc--ccHHHHHHHHHHHHHHHHHhCCCCEEEEEEecCCCcHHHHHHHHHHHHccchhheeeeeehHhh
Confidence 99999999997432 233455566666552 22 3677777764221111 00 1222333334588887544442
Q ss_pred CCC-------CCeEecCCCChHHHHHHHHHh
Q 042541 308 PQF-------GSVHYLKPLTYEAARTLFLHS 331 (695)
Q Consensus 308 ~~~-------~~~~~l~~L~~~ea~~Lf~~~ 331 (695)
..+ -..|-+++++.++|.++-.+.
T Consensus 403 lt~~~~~lprldf~~vp~fsr~qaf~y~~h~ 433 (550)
T PTZ00202 403 LTIANTLLPRLDFYLVPNFSRSQAFAYTQHA 433 (550)
T ss_pred cchhcccCccceeEecCCCCHHHHHHHHhhc
Confidence 111 127889999999998877654
No 24
>COG3899 Predicted ATPase [General function prediction only]
Probab=98.89 E-value=1.4e-07 Score=109.27 Aligned_cols=306 Identities=16% Similarity=0.201 Sum_probs=176.3
Q ss_pred CCCCcchHHHHHHHHH---cCCceEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEe---CCCCC---HHHHHHH
Q 042541 168 SPGLDVPLKELKMELF---KDGRQFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTV---SKNPN---VKAIVQK 238 (695)
Q Consensus 168 ~vGr~~~~~~l~~~L~---~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~---~~~~~---~~~~~~~ 238 (695)
++||+.+++.|...+. .+...++.+.|..|||||+|+++|.. .+.+.+.. .+-..+ ..+.. ....+++
T Consensus 2 l~GRe~ev~~Ll~~f~~v~~g~~~~~lv~G~sGIGKsalv~ev~~--~i~~~~~~-~i~~~f~q~~~~ipl~~lvq~~r~ 78 (849)
T COG3899 2 LYGRETELAQLLAAFDRVSKGRGEVVLVAGESGIGKSALVNEVHK--PITQQRGY-FIKGKFDQFERNIPLSPLVQAFRD 78 (849)
T ss_pred CCchHhHHHHHHHHHHHHhCCCeEEEEEeecCCCcHHHHHHHHHH--HHhcccee-eeHhhcccccCCCchHHHHHHHHH
Confidence 6999999999999887 45578999999999999999999987 55444221 111111 12221 1222233
Q ss_pred HHHhc-------------------CCCCC------------------C--CCC--hHHHHH-HHHHHH--HhcCCCcEEE
Q 042541 239 VLHHK-------------------GYPVP------------------E--FQT--DEAAIN-DLERFF--KQMRIEAILL 274 (695)
Q Consensus 239 i~~~l-------------------~~~~~------------------~--~~~--~~~~~~-~l~~~~--~~l~~~~~Ll 274 (695)
++.++ +.... . ... ...... .+...+ -.-+.++.++
T Consensus 79 l~~~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~plVi 158 (849)
T COG3899 79 LMGQLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHPLVI 158 (849)
T ss_pred HHHHHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCCeEE
Confidence 33322 11100 0 000 000111 122222 1225779999
Q ss_pred EEeCCCCCChH---HHhhhccCCC-----CCEEEE--EcCCCC------CCCCCeEecCCCChHHHHHHHHHhccCCCCC
Q 042541 275 VLDDVWPGSES---LLQKLGFQLP-----DYKILV--TSRSEF------PQFGSVHYLKPLTYEAARTLFLHSANLQDGN 338 (695)
Q Consensus 275 VlDdv~~~~~~---~~~~l~~~~~-----gs~iiv--TtR~~~------~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~ 338 (695)
|+||+...+.. +++.+....+ ...|.. |.+... ......+.|.||+..+...+..........
T Consensus 159 ~leDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~~~~- 237 (849)
T COG3899 159 VLEDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGCTKL- 237 (849)
T ss_pred EEecccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCCccc-
Confidence 99999655543 2333332222 112222 333321 122348999999999999999887654322
Q ss_pred CCCCchHHHHHHHHhcCCchhHHHHHHHhhCCC-------CHHHHHHHHHHhcCCCCccCchhhHHHHHHHHHHhccHHH
Q 042541 339 SYIPDENIVSKILRACKGCPLALKVVGGSLCGK-------HEVFWQRMVKECSRGESVFQSKNDILDCLGSSLDVLNNEV 411 (695)
Q Consensus 339 ~~~~~~~~~~~I~~~c~G~PLai~~~~~~L~~~-------~~~~w~~~l~~~~~~~~~~~~~~~i~~~l~~s~~~L~~~~ 411 (695)
...+....|.++..|+|+.+..+-..+... +...|..-+..... .+..+++...+..-.+.||...
T Consensus 238 ---~~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i~~----~~~~~~vv~~l~~rl~kL~~~t 310 (849)
T COG3899 238 ---LPAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASLGI----LATTDAVVEFLAARLQKLPGTT 310 (849)
T ss_pred ---ccchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhcCC----chhhHHHHHHHHHHHhcCCHHH
Confidence 246779999999999999999988877653 23445433332221 1222346667899999999999
Q ss_pred HHHHhhhcccCCCcccChHHHHHHHHHhhCCChhHHHHHHHHHHhhccccchhhccccCCCCCCCCCc-ceehhHHHHHH
Q 042541 412 KECYLDLCSFPEDQRIPITALIDMWMELYELVDDVFAITNLHELSSQNLVDRVVTRKTAGDYGCYNDD-FVMQHDLLREL 490 (695)
Q Consensus 412 k~cf~~ls~fp~~~~i~~~~Li~~W~~~~~~~~~~~~~~~l~~L~~~sLl~~~~~~~~~~~~~~~~~~-~~~mHdlv~~~ 490 (695)
++.+...|++-.. |+...|...|-. ... ..+...++.|....++-..+....+. ..... |-..||.|++.
T Consensus 311 ~~Vl~~AA~iG~~--F~l~~La~l~~~---~~~-~~a~~l~~al~e~lI~~~~~~yr~~~---~~~~~~Y~F~H~~vqqa 381 (849)
T COG3899 311 REVLKAAACIGNR--FDLDTLAALAED---SPA-LEAAALLDALQEGLILPLSETYRFGS---NVDIATYKFLHDRVQQA 381 (849)
T ss_pred HHHHHHHHHhCcc--CCHHHHHHHHhh---chH-HHHHHHHHHhHhhceecccccccccc---ccchhhHHhhHHHHHHH
Confidence 9999999998755 455666555532 222 25666666665544443211100000 11111 23479999998
Q ss_pred HHH
Q 042541 491 TIC 493 (695)
Q Consensus 491 a~~ 493 (695)
|-.
T Consensus 382 aY~ 384 (849)
T COG3899 382 AYN 384 (849)
T ss_pred Hhc
Confidence 844
No 25
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=98.81 E-value=1.3e-09 Score=108.75 Aligned_cols=122 Identities=19% Similarity=0.279 Sum_probs=100.8
Q ss_pred CccccCChhhcCCCCCcEEEEcccCCCCcccCcccccccCCCCcEEEeccCCCCCcc-cccccccccEEeeccccCCccc
Q 042541 561 TKKYVLPDFLQKMDELKVLIVTNYGFSPAELNNFRVLSALSKLKKIRLEHVSLPNSL-ATVRMNHLQKVSLVMCNVGQVF 639 (695)
Q Consensus 561 ~~~~~~p~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~lp-~i~~l~~L~~L~l~~~~i~~~~ 639 (695)
+....+|..++.+++|..|+|+||-.. .+ +..++.+..|+.|+++.|++..+| .+-.+.-|+.+-.++|++..++
T Consensus 422 n~isfv~~~l~~l~kLt~L~L~NN~Ln--~L--P~e~~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~~vd 497 (565)
T KOG0472|consen 422 NKISFVPLELSQLQKLTFLDLSNNLLN--DL--PEEMGSLVRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQIGSVD 497 (565)
T ss_pred CccccchHHHHhhhcceeeecccchhh--hc--chhhhhhhhhheecccccccccchHHHhhHHHHHHHHhccccccccC
Confidence 444566778899999999999987442 11 122678888999999999999999 7778888888888889999998
Q ss_pred ccchhhhcccCCCccEEecccccccccCchhhcCCCCCceeecccccCCCCCCC
Q 042541 640 RNSTFRISDAFPNLLEMDIDYCNDLIELPDGLCDIVSMEKLRITNCHRLSALPE 693 (695)
Q Consensus 640 ~~~~~~l~~~l~~L~~L~l~~c~~l~~lP~~i~~L~~L~~L~l~~~~~l~~lP~ 693 (695)
++-.. ++.+|.+|||.+ +.+..+|+.+|++++|+||++.||+ ++ .|+
T Consensus 498 ~~~l~----nm~nL~tLDL~n-Ndlq~IPp~LgnmtnL~hLeL~gNp-fr-~Pr 544 (565)
T KOG0472|consen 498 PSGLK----NMRNLTTLDLQN-NDLQQIPPILGNMTNLRHLELDGNP-FR-QPR 544 (565)
T ss_pred hHHhh----hhhhcceeccCC-CchhhCChhhccccceeEEEecCCc-cC-CCH
Confidence 88444 899999999998 5789999999999999999999988 54 553
No 26
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=98.76 E-value=1.1e-09 Score=114.04 Aligned_cols=139 Identities=17% Similarity=0.264 Sum_probs=96.5
Q ss_pred CCCCceEEEEEEccCccccCChhhcCCCCCcEEEEcccCCCCcccCcccccccCCCCcEEEeccCCCCCcc--ccccccc
Q 042541 547 MQGPEVKVVVLNIRTKKYVLPDFLQKMDELKVLIVTNYGFSPAELNNFRVLSALSKLKKIRLEHVSLPNSL--ATVRMNH 624 (695)
Q Consensus 547 ~~~~~l~~L~l~~~~~~~~~p~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~lp--~i~~l~~ 624 (695)
+++++|+.|+|++|.....-+++..-.++|+.|+|++|.+.. + ...++..|+.|+.|+|++|+++++. .+..+.+
T Consensus 290 fgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~--l-~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lss 366 (873)
T KOG4194|consen 290 FGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITR--L-DEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSS 366 (873)
T ss_pred cccchhhhhccchhhhheeecchhhhcccceeEecccccccc--C-ChhHHHHHHHhhhhcccccchHHHHhhHHHHhhh
Confidence 356677777777775555555566667777777777765531 1 1123666777788888888887776 6777888
Q ss_pred ccEEeeccccCCcccccchhhhcccCCCccEEecccccccccCchh-hcCCCCCceeecccccCCCCC
Q 042541 625 LQKVSLVMCNVGQVFRNSTFRISDAFPNLLEMDIDYCNDLIELPDG-LCDIVSMEKLRITNCHRLSAL 691 (695)
Q Consensus 625 L~~L~l~~~~i~~~~~~~~~~l~~~l~~L~~L~l~~c~~l~~lP~~-i~~L~~L~~L~l~~~~~l~~l 691 (695)
|+.|||++|.+....++....+. .|++|+.|++.+| .+..+|.. |..|.+|++|||.+|. +.++
T Consensus 367 L~~LdLr~N~ls~~IEDaa~~f~-gl~~LrkL~l~gN-qlk~I~krAfsgl~~LE~LdL~~Na-iaSI 431 (873)
T KOG4194|consen 367 LHKLDLRSNELSWCIEDAAVAFN-GLPSLRKLRLTGN-QLKSIPKRAFSGLEALEHLDLGDNA-IASI 431 (873)
T ss_pred hhhhcCcCCeEEEEEecchhhhc-cchhhhheeecCc-eeeecchhhhccCcccceecCCCCc-ceee
Confidence 88888888877766554322111 6888888888884 67888864 8889999999998866 4443
No 27
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.76 E-value=1.1e-07 Score=102.08 Aligned_cols=174 Identities=16% Similarity=0.137 Sum_probs=105.4
Q ss_pred CCCCCCCcchHHH---HHHHHHcCCceEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCCCCCHHHHHHHHHH
Q 042541 165 PVISPGLDVPLKE---LKMELFKDGRQFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSKNPNVKAIVQKVLH 241 (695)
Q Consensus 165 ~~~~vGr~~~~~~---l~~~L~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~~~~~~~~~~~i~~ 241 (695)
-+.+||.+..+.. +..++.......+.|+|++|+||||||+.+++. .... |+.++.......-++.+++
T Consensus 11 l~d~vGq~~~v~~~~~L~~~i~~~~~~~ilL~GppGtGKTtLA~~ia~~--~~~~------~~~l~a~~~~~~~ir~ii~ 82 (413)
T PRK13342 11 LDEVVGQEHLLGPGKPLRRMIEAGRLSSMILWGPPGTGKTTLARIIAGA--TDAP------FEALSAVTSGVKDLREVIE 82 (413)
T ss_pred HHHhcCcHHHhCcchHHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHH--hCCC------EEEEecccccHHHHHHHHH
Confidence 4467998887665 777787777778899999999999999999873 3222 3333322111111112221
Q ss_pred hcCCCCCCCCChHHHHHHHHHHHHhcCCCcEEEEEeCCCCCChHHHhhhccCC-CCCEEEE--EcCCCCC-------CCC
Q 042541 242 HKGYPVPEFQTDEAAINDLERFFKQMRIEAILLVLDDVWPGSESLLQKLGFQL-PDYKILV--TSRSEFP-------QFG 311 (695)
Q Consensus 242 ~l~~~~~~~~~~~~~~~~l~~~~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~~-~gs~iiv--TtR~~~~-------~~~ 311 (695)
.. .. ....+++.+|++|+++.........+.... .|..++| ||.+... .-.
T Consensus 83 ~~-----------------~~--~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le~~~iilI~att~n~~~~l~~aL~SR~ 143 (413)
T PRK13342 83 EA-----------------RQ--RRSAGRRTILFIDEIHRFNKAQQDALLPHVEDGTITLIGATTENPSFEVNPALLSRA 143 (413)
T ss_pred HH-----------------HH--hhhcCCceEEEEechhhhCHHHHHHHHHHhhcCcEEEEEeCCCChhhhccHHHhccc
Confidence 11 10 111467899999999877644333332222 3444444 3333211 112
Q ss_pred CeEecCCCChHHHHHHHHHhccCCCCCCCCCchHHHHHHHHhcCCchhHHHHHH
Q 042541 312 SVHYLKPLTYEAARTLFLHSANLQDGNSYIPDENIVSKILRACKGCPLALKVVG 365 (695)
Q Consensus 312 ~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~~ 365 (695)
..+.+.+++.++...++.+.+.........-..+....|++.|+|.+..+..+.
T Consensus 144 ~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~Gd~R~aln~L 197 (413)
T PRK13342 144 QVFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANGDARRALNLL 197 (413)
T ss_pred eeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCCCHHHHHHHH
Confidence 378999999999999998865331111102246778899999999997665443
No 28
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.73 E-value=9.9e-09 Score=94.88 Aligned_cols=126 Identities=17% Similarity=0.229 Sum_probs=45.3
Q ss_pred CCCceEEEEEEccCccccCChhhc-CCCCCcEEEEcccCCCCcccCcccccccCCCCcEEEeccCCCCCcc-cc-ccccc
Q 042541 548 QGPEVKVVVLNIRTKKYVLPDFLQ-KMDELKVLIVTNYGFSPAELNNFRVLSALSKLKKIRLEHVSLPNSL-AT-VRMNH 624 (695)
Q Consensus 548 ~~~~l~~L~l~~~~~~~~~p~~~~-~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~lp-~i-~~l~~ 624 (695)
++.+++.|.|.++.... + +.++ .+.+|+.|++++|++. .++.+..|++|+.|++++|.|++++ .+ ..+++
T Consensus 17 n~~~~~~L~L~~n~I~~-I-e~L~~~l~~L~~L~Ls~N~I~-----~l~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~ 89 (175)
T PF14580_consen 17 NPVKLRELNLRGNQIST-I-ENLGATLDKLEVLDLSNNQIT-----KLEGLPGLPRLKTLDLSNNRISSISEGLDKNLPN 89 (175)
T ss_dssp ---------------------S--TT-TT--EEE-TTS--S-------TT----TT--EEE--SS---S-CHHHHHH-TT
T ss_pred ccccccccccccccccc-c-cchhhhhcCCCEEECCCCCCc-----cccCccChhhhhhcccCCCCCCccccchHHhCCc
Confidence 34456777777763321 1 2343 4677888888887663 2334667788888888888888776 55 35788
Q ss_pred ccEEeeccccCCcccccchhhhcccCCCccEEecccccccccCch----hhcCCCCCceeeccc
Q 042541 625 LQKVSLVMCNVGQVFRNSTFRISDAFPNLLEMDIDYCNDLIELPD----GLCDIVSMEKLRITN 684 (695)
Q Consensus 625 L~~L~l~~~~i~~~~~~~~~~l~~~l~~L~~L~l~~c~~l~~lP~----~i~~L~~L~~L~l~~ 684 (695)
|+.|++++|.|..+-. . ..+. .+++|+.|++.+|+ +..-+. -+..+++|+.||-..
T Consensus 90 L~~L~L~~N~I~~l~~-l-~~L~-~l~~L~~L~L~~NP-v~~~~~YR~~vi~~lP~Lk~LD~~~ 149 (175)
T PF14580_consen 90 LQELYLSNNKISDLNE-L-EPLS-SLPKLRVLSLEGNP-VCEKKNYRLFVIYKLPSLKVLDGQD 149 (175)
T ss_dssp --EEE-TTS---SCCC-C-GGGG-G-TT--EEE-TT-G-GGGSTTHHHHHHHH-TT-SEETTEE
T ss_pred CCEEECcCCcCCChHH-h-HHHH-cCCCcceeeccCCc-ccchhhHHHHHHHHcChhheeCCEE
Confidence 8888888887766433 1 1222 67888888888764 333342 256788888887654
No 29
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.73 E-value=3.9e-07 Score=95.89 Aligned_cols=191 Identities=15% Similarity=0.169 Sum_probs=111.3
Q ss_pred CCCCCCCcchHHHHHHHHHcCCceEEEEEcCCCCcHHHHHHHHhccccccc-cCCCcEEEEEeCCCCCH--HHHHH--HH
Q 042541 165 PVISPGLDVPLKELKMELFKDGRQFIVVSAPGGYGKTTLVQRLCKDDQVQG-KFKDDIFYVTVSKNPNV--KAIVQ--KV 239 (695)
Q Consensus 165 ~~~~vGr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~-~f~~~~~wv~~~~~~~~--~~~~~--~i 239 (695)
-+.++|++..++.+..++..+..+.+.++|++|+||||+|+.+.+ .+.. .+....+.+++++.... ..+.. ..
T Consensus 14 ~~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~--~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 91 (337)
T PRK12402 14 LEDILGQDEVVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALAR--ELYGDPWENNFTEFNVADFFDQGKKYLVEDPRF 91 (337)
T ss_pred HHHhcCCHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHH--HhcCcccccceEEechhhhhhcchhhhhcCcch
Confidence 356799999999999988877766789999999999999999987 3322 22333445555432110 00000 00
Q ss_pred HHhcCCCCCCCCChHHHHHHHHHHHH---h---cCCCcEEEEEeCCCCCChH----HHhhhccCCCCCEEEEEcCCCC--
Q 042541 240 LHHKGYPVPEFQTDEAAINDLERFFK---Q---MRIEAILLVLDDVWPGSES----LLQKLGFQLPDYKILVTSRSEF-- 307 (695)
Q Consensus 240 ~~~l~~~~~~~~~~~~~~~~l~~~~~---~---l~~~~~LlVlDdv~~~~~~----~~~~l~~~~~gs~iivTtR~~~-- 307 (695)
...++.... ........++.+++ . ..+.+-+||+||+...... +...+....+.+++|+||....
T Consensus 92 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~~~ 168 (337)
T PRK12402 92 AHFLGTDKR---IRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQPSKL 168 (337)
T ss_pred hhhhhhhhh---hccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCChhhC
Confidence 000000000 00001122222221 1 1244568999999766533 2222333344577888775431
Q ss_pred ----CCCCCeEecCCCChHHHHHHHHHhccCCCCCCCCCchHHHHHHHHhcCCchhHHHH
Q 042541 308 ----PQFGSVHYLKPLTYEAARTLFLHSANLQDGNSYIPDENIVSKILRACKGCPLALKV 363 (695)
Q Consensus 308 ----~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~ 363 (695)
...+..+.+.+++.++...++...+...... -..+.+..+++.++|.+-.+..
T Consensus 169 ~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~~---~~~~al~~l~~~~~gdlr~l~~ 225 (337)
T PRK12402 169 IPPIRSRCLPLFFRAPTDDELVDVLESIAEAEGVD---YDDDGLELIAYYAGGDLRKAIL 225 (337)
T ss_pred chhhcCCceEEEecCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHHHH
Confidence 1223478899999999999998866433321 2367889999999998765543
No 30
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.71 E-value=1.4e-06 Score=96.35 Aligned_cols=189 Identities=13% Similarity=0.109 Sum_probs=110.5
Q ss_pred CCCCCCCcchHHHHHHHHHcCC-ceEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCCCCCHHHHHHHH-HHh
Q 042541 165 PVISPGLDVPLKELKMELFKDG-RQFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSKNPNVKAIVQKV-LHH 242 (695)
Q Consensus 165 ~~~~vGr~~~~~~l~~~L~~~~-~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~~~~~~~~~~~i-~~~ 242 (695)
-+.+||.+..++.|..++..+. ...+.++|..|+||||+|+.+.+...-...+. ...+..+.+-..+...- ..-
T Consensus 15 FdEVIGQe~Vv~~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~----~~PCG~C~sCr~I~~G~h~Dv 90 (830)
T PRK07003 15 FASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVT----SQPCGVCRACREIDEGRFVDY 90 (830)
T ss_pred HHHHcCcHHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCC----CCCCcccHHHHHHhcCCCceE
Confidence 3467999999999999998766 45668999999999999998876311111100 00011111111110000 000
Q ss_pred cCCCCCCCCChHHHHHHHHHHHHh-----cCCCcEEEEEeCCCCCChH----HHhhhccCCCCCEEEEEcCCCCCCC---
Q 042541 243 KGYPVPEFQTDEAAINDLERFFKQ-----MRIEAILLVLDDVWPGSES----LLQKLGFQLPDYKILVTSRSEFPQF--- 310 (695)
Q Consensus 243 l~~~~~~~~~~~~~~~~l~~~~~~-----l~~~~~LlVlDdv~~~~~~----~~~~l~~~~~gs~iivTtR~~~~~~--- 310 (695)
+..... ....++.++++++. ..++.-++|||+++..... +++.+....++.++|+||.+.....
T Consensus 91 iEIDAa----s~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~~KIp~TI 166 (830)
T PRK07003 91 VEMDAA----SNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTV 166 (830)
T ss_pred EEeccc----ccccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECChhhccchh
Confidence 000000 00112222233211 2356678999999877643 4455544556788888888763211
Q ss_pred ---CCeEecCCCChHHHHHHHHHhccCCCCCCCCCchHHHHHHHHhcCCch-hHHHHH
Q 042541 311 ---GSVHYLKPLTYEAARTLFLHSANLQDGNSYIPDENIVSKILRACKGCP-LALKVV 364 (695)
Q Consensus 311 ---~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~G~P-Lai~~~ 364 (695)
...+++++++.++..+.+.+.+..... .-..+..+.|++.++|.. -++..+
T Consensus 167 rSRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI---~id~eAL~lIA~~A~GsmRdALsLL 221 (830)
T PRK07003 167 LSRCLQFNLKQMPAGHIVSHLERILGEERI---AFEPQALRLLARAAQGSMRDALSLT 221 (830)
T ss_pred hhheEEEecCCcCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 127999999999999999887654322 124677889999999865 455543
No 31
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=98.71 E-value=7.1e-10 Score=110.55 Aligned_cols=117 Identities=18% Similarity=0.229 Sum_probs=102.5
Q ss_pred CccccCChhhcCCCCCcEEEEcccCCCCcccCcccccccCCCCcEEEeccCCCCCcc-ccc-ccccccEEeeccccCCcc
Q 042541 561 TKKYVLPDFLQKMDELKVLIVTNYGFSPAELNNFRVLSALSKLKKIRLEHVSLPNSL-ATV-RMNHLQKVSLVMCNVGQV 638 (695)
Q Consensus 561 ~~~~~~p~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~lp-~i~-~l~~L~~L~l~~~~i~~~ 638 (695)
+..+.+|+.+++|.+|..|+|+.|.+ ..+|.|.++..|+.|.+..|.|..+| +++ +|.+|-+|||+.|+++..
T Consensus 193 N~L~tlP~~lg~l~~L~~LyL~~Nki-----~~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~ 267 (565)
T KOG0472|consen 193 NLLETLPPELGGLESLELLYLRRNKI-----RFLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEV 267 (565)
T ss_pred hhhhcCChhhcchhhhHHHHhhhccc-----ccCCCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccccC
Confidence 45578899999999999999998765 23345788999999999999999999 666 899999999999999999
Q ss_pred cccchhhhcccCCCccEEecccccccccCchhhcCCCCCceeecccccCCCC
Q 042541 639 FRNSTFRISDAFPNLLEMDIDYCNDLIELPDGLCDIVSMEKLRITNCHRLSA 690 (695)
Q Consensus 639 ~~~~~~~l~~~l~~L~~L~l~~c~~l~~lP~~i~~L~~L~~L~l~~~~~l~~ 690 (695)
|.+++ .|++|..||+++ +.+..+|.++|+| .|+.|-+.||+ ++.
T Consensus 268 Pde~c-----lLrsL~rLDlSN-N~is~Lp~sLgnl-hL~~L~leGNP-lrT 311 (565)
T KOG0472|consen 268 PDEIC-----LLRSLERLDLSN-NDISSLPYSLGNL-HLKFLALEGNP-LRT 311 (565)
T ss_pred chHHH-----HhhhhhhhcccC-CccccCCcccccc-eeeehhhcCCc-hHH
Confidence 98887 899999999998 5789999999999 99999999987 544
No 32
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=98.69 E-value=1.2e-08 Score=106.60 Aligned_cols=151 Identities=11% Similarity=0.119 Sum_probs=74.3
Q ss_pred ccceEEeeecCCcccCCCCC-CCCCceEEEEEEccCccccCChhhcCCCCCcEEEEcccCCCCcccCcccccccCCCCcE
Q 042541 527 NNASLLSISTDETFSSNWPD-MQGPEVKVVVLNIRTKKYVLPDFLQKMDELKVLIVTNYGFSPAELNNFRVLSALSKLKK 605 (695)
Q Consensus 527 ~~~r~l~~~~~~~~~~~~~~-~~~~~l~~L~l~~~~~~~~~p~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~ 605 (695)
.++.+|-+.++.+....... -.+.+|.+|.|+.|....-.+..|+++++|+.|+|..|.+... ....+..|++|+.
T Consensus 173 ~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~iriv---e~ltFqgL~Sl~n 249 (873)
T KOG4194|consen 173 VNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIV---EGLTFQGLPSLQN 249 (873)
T ss_pred CCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeee---hhhhhcCchhhhh
Confidence 35666666655433222111 2455777777776655444445788889999998887755321 1112344444555
Q ss_pred EEeccCCCCCcc--cccccccccEEeeccccCCcccccchhhhcccCCCccEEecccccccccCchhhcCCCCCceeecc
Q 042541 606 IRLEHVSLPNSL--ATVRMNHLQKVSLVMCNVGQVFRNSTFRISDAFPNLLEMDIDYCNDLIELPDGLCDIVSMEKLRIT 683 (695)
Q Consensus 606 L~L~~~~l~~lp--~i~~l~~L~~L~l~~~~i~~~~~~~~~~l~~~l~~L~~L~l~~c~~l~~lP~~i~~L~~L~~L~l~ 683 (695)
|.|..|.|..+- .+-.|.++++|+|..|++..+...... +|++|+.|+|++|.--.--+++..-.++|+.|+|+
T Consensus 250 lklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lf----gLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs 325 (873)
T KOG4194|consen 250 LKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLF----GLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLS 325 (873)
T ss_pred hhhhhcCcccccCcceeeecccceeecccchhhhhhccccc----ccchhhhhccchhhhheeecchhhhcccceeEecc
Confidence 555555544444 333444444444444444444333322 44444444444432211122233333444444444
Q ss_pred c
Q 042541 684 N 684 (695)
Q Consensus 684 ~ 684 (695)
+
T Consensus 326 ~ 326 (873)
T KOG4194|consen 326 S 326 (873)
T ss_pred c
Confidence 4
No 33
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.69 E-value=3.8e-07 Score=86.19 Aligned_cols=171 Identities=20% Similarity=0.251 Sum_probs=94.0
Q ss_pred CCCCCCCCCcchHHHHHHHHH-----cCCceEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCCCCCHHHHHH
Q 042541 163 DPPVISPGLDVPLKELKMELF-----KDGRQFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSKNPNVKAIVQ 237 (695)
Q Consensus 163 ~~~~~~vGr~~~~~~l~~~L~-----~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~~~~~~~~~~ 237 (695)
..-+.|||-+.-++.+.-++. ++...-+.+||++|+||||||.-+++ .....| .+++.+.....
T Consensus 21 ~~L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~--e~~~~~----~~~sg~~i~k~----- 89 (233)
T PF05496_consen 21 KSLDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIAN--ELGVNF----KITSGPAIEKA----- 89 (233)
T ss_dssp SSCCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHH--HCT--E----EEEECCC--SC-----
T ss_pred CCHHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHh--ccCCCe----EeccchhhhhH-----
Confidence 344678999988887765554 23467799999999999999999998 444443 23332111011
Q ss_pred HHHHhcCCCCCCCCChHHHHHHHHHHHHhcCCCcEEEEEeCCCCCChH----HHhhhcc--------CCCCC--------
Q 042541 238 KVLHHKGYPVPEFQTDEAAINDLERFFKQMRIEAILLVLDDVWPGSES----LLQKLGF--------QLPDY-------- 297 (695)
Q Consensus 238 ~i~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~~~LlVlDdv~~~~~~----~~~~l~~--------~~~gs-------- 297 (695)
..+..++..++ ++-+|.+|++...... ++..+.. .+++.
T Consensus 90 --------------------~dl~~il~~l~-~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~ 148 (233)
T PF05496_consen 90 --------------------GDLAAILTNLK-EGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLP 148 (233)
T ss_dssp --------------------HHHHHHHHT---TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE--
T ss_pred --------------------HHHHHHHHhcC-CCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCC
Confidence 11222333333 3557777998776532 1111111 11221
Q ss_pred --E-EEEEcCCCCC------CCCCeEecCCCChHHHHHHHHHhccCCCCCCCCCchHHHHHHHHhcCCchhHHHHHHHhh
Q 042541 298 --K-ILVTSRSEFP------QFGSVHYLKPLTYEAARTLFLHSANLQDGNSYIPDENIVSKILRACKGCPLALKVVGGSL 368 (695)
Q Consensus 298 --~-iivTtR~~~~------~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~~~~L 368 (695)
. |=.|||.... ..+...+++..+.+|-.++..+.+..-.. .-.++.+.+|++.|.|-|.-..-+-...
T Consensus 149 ~FTligATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~i---~i~~~~~~~Ia~rsrGtPRiAnrll~rv 225 (233)
T PF05496_consen 149 PFTLIGATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILNI---EIDEDAAEEIARRSRGTPRIANRLLRRV 225 (233)
T ss_dssp --EEEEEESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT----EE-HHHHHHHHHCTTTSHHHHHHHHHHH
T ss_pred CceEeeeeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhCC---CcCHHHHHHHHHhcCCChHHHHHHHHHH
Confidence 2 3358887632 34447789999999999999987654332 1247889999999999997655544433
No 34
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.68 E-value=1.7e-07 Score=94.65 Aligned_cols=207 Identities=16% Similarity=0.165 Sum_probs=116.9
Q ss_pred HHHHHHHcCCceEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCCCCCHHHHHHHHHHhcCCCCCCCCChHHH
Q 042541 177 ELKMELFKDGRQFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSKNPNVKAIVQKVLHHKGYPVPEFQTDEAA 256 (695)
Q Consensus 177 ~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ 256 (695)
-|..++..+...-.-+||++|+||||||+.+.. .....| ..++...+-..-++++++..
T Consensus 38 ~lrr~v~~~~l~SmIl~GPPG~GKTTlA~liA~--~~~~~f------~~~sAv~~gvkdlr~i~e~a------------- 96 (436)
T COG2256 38 PLRRAVEAGHLHSMILWGPPGTGKTTLARLIAG--TTNAAF------EALSAVTSGVKDLREIIEEA------------- 96 (436)
T ss_pred hHHHHHhcCCCceeEEECCCCCCHHHHHHHHHH--hhCCce------EEeccccccHHHHHHHHHHH-------------
Confidence 344555677777788999999999999999987 444443 33333322222222222221
Q ss_pred HHHHHHHHHhcCCCcEEEEEeCCCCCChHHHhhhccCC-CCCEEEE--EcCCCCCC-------CCCeEecCCCChHHHHH
Q 042541 257 INDLERFFKQMRIEAILLVLDDVWPGSESLLQKLGFQL-PDYKILV--TSRSEFPQ-------FGSVHYLKPLTYEAART 326 (695)
Q Consensus 257 ~~~l~~~~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~~-~gs~iiv--TtR~~~~~-------~~~~~~l~~L~~~ea~~ 326 (695)
+. ....|++.+|++|.|..-....-+.|.+.. .|.-|+| ||-+..-. -..++.+++|+.++-.+
T Consensus 97 ----~~--~~~~gr~tiLflDEIHRfnK~QQD~lLp~vE~G~iilIGATTENPsF~ln~ALlSR~~vf~lk~L~~~di~~ 170 (436)
T COG2256 97 ----RK--NRLLGRRTILFLDEIHRFNKAQQDALLPHVENGTIILIGATTENPSFELNPALLSRARVFELKPLSSEDIKK 170 (436)
T ss_pred ----HH--HHhcCCceEEEEehhhhcChhhhhhhhhhhcCCeEEEEeccCCCCCeeecHHHhhhhheeeeecCCHHHHHH
Confidence 11 122489999999999776644445555544 4666666 66655321 12389999999999999
Q ss_pred HHHHhccCCCCCCC---C-CchHHHHHHHHhcCCchhHHHH---HHHhhCCC----CHHHHHHHHHHhcCCCCc-cCchh
Q 042541 327 LFLHSANLQDGNSY---I-PDENIVSKILRACKGCPLALKV---VGGSLCGK----HEVFWQRMVKECSRGESV-FQSKN 394 (695)
Q Consensus 327 Lf~~~~~~~~~~~~---~-~~~~~~~~I~~~c~G~PLai~~---~~~~L~~~----~~~~w~~~l~~~~~~~~~-~~~~~ 394 (695)
++.+.+........ . -.++....+++.++|=-.++-. ++..+... ..+..+..+.+.....+. .+...
T Consensus 171 ~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R~aLN~LE~~~~~~~~~~~~~~~~l~~~l~~~~~~~Dk~gD~hY 250 (436)
T COG2256 171 LLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDARRALNLLELAALSAEPDEVLILELLEEILQRRSARFDKDGDAHY 250 (436)
T ss_pred HHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchHHHHHHHHHHHHHhcCCCcccCHHHHHHHHhhhhhccCCCcchHH
Confidence 99984433222111 1 1356778899999886543222 22222222 123333333332211111 12233
Q ss_pred hHHHHHHHHHHhccHH
Q 042541 395 DILDCLGSSLDVLNNE 410 (695)
Q Consensus 395 ~i~~~l~~s~~~L~~~ 410 (695)
++..++.-|...-+++
T Consensus 251 dliSA~hKSvRGSD~d 266 (436)
T COG2256 251 DLISALHKSVRGSDPD 266 (436)
T ss_pred HHHHHHHHhhccCCcC
Confidence 6777777777666554
No 35
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.62 E-value=1.5e-06 Score=91.72 Aligned_cols=188 Identities=15% Similarity=0.061 Sum_probs=106.5
Q ss_pred CCCCCCCcchHHHHHHHHHcCC-ceEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCCCCCHHHHHHHHHHhc
Q 042541 165 PVISPGLDVPLKELKMELFKDG-RQFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSKNPNVKAIVQKVLHHK 243 (695)
Q Consensus 165 ~~~~vGr~~~~~~l~~~L~~~~-~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~~~~~~~~~~~i~~~l 243 (695)
-+.++|-+..++.+...+..+. ...+.++|+.|+||||+|+.+++.-.-...+... .+..+.+...+.....-.+
T Consensus 15 ~~~iiGq~~~~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~----pc~~c~~c~~~~~~~~~d~ 90 (363)
T PRK14961 15 FRDIIGQKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSN----PCRKCIICKEIEKGLCLDL 90 (363)
T ss_pred hhhccChHHHHHHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCC----CCCCCHHHHHHhcCCCCce
Confidence 3467999999999999888665 4567899999999999999998731101100000 0000000111100000000
Q ss_pred CCCCCCCCChHHHHHHHHHHHHhc-----CCCcEEEEEeCCCCCChH----HHhhhccCCCCCEEEEEcCCCCC------
Q 042541 244 GYPVPEFQTDEAAINDLERFFKQM-----RIEAILLVLDDVWPGSES----LLQKLGFQLPDYKILVTSRSEFP------ 308 (695)
Q Consensus 244 ~~~~~~~~~~~~~~~~l~~~~~~l-----~~~~~LlVlDdv~~~~~~----~~~~l~~~~~gs~iivTtR~~~~------ 308 (695)
..-.+.... ..+.++++.+.+ .++.-++|+|++...... ++..+....+.+++|++|.+...
T Consensus 91 ~~~~~~~~~---~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~~~l~~tI~ 167 (363)
T PRK14961 91 IEIDAASRT---KVEEMREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEKIPKTIL 167 (363)
T ss_pred EEecccccC---CHHHHHHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCChHhhhHHHH
Confidence 000000000 112222222221 355679999999877643 44444444456777777754321
Q ss_pred CCCCeEecCCCChHHHHHHHHHhccCCCCCCCCCchHHHHHHHHhcCCchhHHH
Q 042541 309 QFGSVHYLKPLTYEAARTLFLHSANLQDGNSYIPDENIVSKILRACKGCPLALK 362 (695)
Q Consensus 309 ~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~ 362 (695)
.-...+++.+++.++..+.+...+..... .-.++.+..|++.++|.|..+.
T Consensus 168 SRc~~~~~~~l~~~el~~~L~~~~~~~g~---~i~~~al~~ia~~s~G~~R~al 218 (363)
T PRK14961 168 SRCLQFKLKIISEEKIFNFLKYILIKESI---DTDEYALKLIAYHAHGSMRDAL 218 (363)
T ss_pred hhceEEeCCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHH
Confidence 11248999999999999988876644322 1235678889999999886443
No 36
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.62 E-value=2.7e-06 Score=88.78 Aligned_cols=198 Identities=15% Similarity=0.135 Sum_probs=126.8
Q ss_pred CCCCCCCcchHHHHHHHHH----cCCceEEEEEcCCCCcHHHHHHHHhccccccccCCCc-EEEEEeCCCCCHHHHHHHH
Q 042541 165 PVISPGLDVPLKELKMELF----KDGRQFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDD-IFYVTVSKNPNVKAIVQKV 239 (695)
Q Consensus 165 ~~~~vGr~~~~~~l~~~L~----~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~-~~wv~~~~~~~~~~~~~~i 239 (695)
|+.+.+|+++++++...|. ++.+.-+.|+|..|.|||+.++.+.+ ++....... +++|++....+...++..|
T Consensus 16 P~~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~--~l~~~~~~~~~~yINc~~~~t~~~i~~~i 93 (366)
T COG1474 16 PEELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVME--ELEESSANVEVVYINCLELRTPYQVLSKI 93 (366)
T ss_pred cccccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHH--HHHhhhccCceEEEeeeeCCCHHHHHHHH
Confidence 4458999999999998877 33344599999999999999999998 665554433 6799999999999999999
Q ss_pred HHhcCCCCCCCCChHHHHHHHHHHHHhcCCCcEEEEEeCCCCCChH----HHhhhccCCC-CCEEEE--EcCCC------
Q 042541 240 LHHKGYPVPEFQTDEAAINDLERFFKQMRIEAILLVLDDVWPGSES----LLQKLGFQLP-DYKILV--TSRSE------ 306 (695)
Q Consensus 240 ~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~~~LlVlDdv~~~~~~----~~~~l~~~~~-gs~iiv--TtR~~------ 306 (695)
+++++..........+..+.+.+.+.. .++.+++|||+++..... +..-+..... +++|++ .+-+.
T Consensus 94 ~~~~~~~p~~g~~~~~~~~~l~~~~~~-~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~~~~v~vi~i~n~~~~~~~l 172 (366)
T COG1474 94 LNKLGKVPLTGDSSLEILKRLYDNLSK-KGKTVIVILDEVDALVDKDGEVLYSLLRAPGENKVKVSIIAVSNDDKFLDYL 172 (366)
T ss_pred HHHcCCCCCCCCchHHHHHHHHHHHHh-cCCeEEEEEcchhhhccccchHHHHHHhhccccceeEEEEEEeccHHHHHHh
Confidence 999974444344445555555555533 578999999998654322 2222222222 344443 22221
Q ss_pred -----CCCCCCeEecCCCChHHHHHHHHHhccCCCCC--CCCCc-hHHHHHHHHhcCCchhHHHHHH
Q 042541 307 -----FPQFGSVHYLKPLTYEAARTLFLHSANLQDGN--SYIPD-ENIVSKILRACKGCPLALKVVG 365 (695)
Q Consensus 307 -----~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~--~~~~~-~~~~~~I~~~c~G~PLai~~~~ 365 (695)
..-....+..+|-+.+|-.+++..++...-.. ..... +-++...++..|-.-.||..+-
T Consensus 173 d~rv~s~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidilr 239 (366)
T COG1474 173 DPRVKSSLGPSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDILR 239 (366)
T ss_pred hhhhhhccCcceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHHHHH
Confidence 11111257889999999999998877533221 12222 3333333444444455555543
No 37
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.61 E-value=9.5e-07 Score=99.44 Aligned_cols=188 Identities=18% Similarity=0.100 Sum_probs=109.2
Q ss_pred CCCCCCCcchHHHHHHHHHcCCce-EEEEEcCCCCcHHHHHHHHhcccccccc-C-CCcEEEEEeCCCCCHHHHHH---H
Q 042541 165 PVISPGLDVPLKELKMELFKDGRQ-FIVVSAPGGYGKTTLVQRLCKDDQVQGK-F-KDDIFYVTVSKNPNVKAIVQ---K 238 (695)
Q Consensus 165 ~~~~vGr~~~~~~l~~~L~~~~~~-vv~I~G~gGiGKTtLa~~~~~~~~~~~~-f-~~~~~wv~~~~~~~~~~~~~---~ 238 (695)
-..+||-+..++.|..++..+... .+.++|+.|+||||+|+.+++. +... . .. . .+..+..-..+.. .
T Consensus 15 FddIIGQe~Iv~~LknaI~~~rl~HAyLFtGPpGtGKTTLARiLAk~--Lnce~~~~~-~---pCg~C~sC~~i~~g~~~ 88 (944)
T PRK14949 15 FEQMVGQSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKG--LNCEQGVTA-T---PCGVCSSCVEIAQGRFV 88 (944)
T ss_pred HHHhcCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHh--ccCccCCCC-C---CCCCchHHHHHhcCCCc
Confidence 346799999999999998877654 4589999999999999999873 3211 0 00 0 0000000000000 0
Q ss_pred HHHhcCCCCCCCCChHHHHHHHHHHH--HhcCCCcEEEEEeCCCCCChH----HHhhhccCCCCCEEEEEcCCCCCCC--
Q 042541 239 VLHHKGYPVPEFQTDEAAINDLERFF--KQMRIEAILLVLDDVWPGSES----LLQKLGFQLPDYKILVTSRSEFPQF-- 310 (695)
Q Consensus 239 i~~~l~~~~~~~~~~~~~~~~l~~~~--~~l~~~~~LlVlDdv~~~~~~----~~~~l~~~~~gs~iivTtR~~~~~~-- 310 (695)
.+..+... . ....+.+..+...+ ....++.-++|+|++...... +++.+-.....+++|++|.+...-.
T Consensus 89 DviEidAa--s-~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILaTTe~~kLl~T 165 (944)
T PRK14949 89 DLIEVDAA--S-RTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQKLPVT 165 (944)
T ss_pred eEEEeccc--c-ccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEECCCchhchHH
Confidence 00000000 0 00111112222211 122477889999999877643 4444444445677777766542111
Q ss_pred ----CCeEecCCCChHHHHHHHHHhccCCCCCCCCCchHHHHHHHHhcCCchhHHHHH
Q 042541 311 ----GSVHYLKPLTYEAARTLFLHSANLQDGNSYIPDENIVSKILRACKGCPLALKVV 364 (695)
Q Consensus 311 ----~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~ 364 (695)
...|++++++.++..+.+.+.+..... .-..+.+..|++.++|.|.-+..+
T Consensus 166 IlSRCq~f~fkpLs~eEI~~~L~~il~~EgI---~~edeAL~lIA~~S~Gd~R~ALnL 220 (944)
T PRK14949 166 VLSRCLQFNLKSLTQDEIGTQLNHILTQEQL---PFEAEALTLLAKAANGSMRDALSL 220 (944)
T ss_pred HHHhheEEeCCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 238999999999999999886644221 124677899999999988644433
No 38
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.60 E-value=1.1e-07 Score=84.90 Aligned_cols=116 Identities=26% Similarity=0.441 Sum_probs=75.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcccccccc----CCCcEEEEEeCCCCCHHHHHHHHHHhcCCCCCCCCChHHHHHHHHH
Q 042541 187 RQFIVVSAPGGYGKTTLVQRLCKDDQVQGK----FKDDIFYVTVSKNPNVKAIVQKVLHHKGYPVPEFQTDEAAINDLER 262 (695)
Q Consensus 187 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~----f~~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~ 262 (695)
.+++.|+|.+|+|||++++.+.+. .... ....++|++++...+...+...|+.+++.............+.+.+
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~ 81 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQ--LNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLID 81 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHH--HHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHH--hHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHH
Confidence 478999999999999999999884 2211 0334789999888899999999999998876553334444444444
Q ss_pred HHHhcCCCcEEEEEeCCCCC-ChHHHhhhc--cCCCCCEEEEEcCCC
Q 042541 263 FFKQMRIEAILLVLDDVWPG-SESLLQKLG--FQLPDYKILVTSRSE 306 (695)
Q Consensus 263 ~~~~l~~~~~LlVlDdv~~~-~~~~~~~l~--~~~~gs~iivTtR~~ 306 (695)
.+.. .+..+||+||++.. ....+..+. ....+.++|+..+..
T Consensus 82 ~l~~--~~~~~lviDe~~~l~~~~~l~~l~~l~~~~~~~vvl~G~~~ 126 (131)
T PF13401_consen 82 ALDR--RRVVLLVIDEADHLFSDEFLEFLRSLLNESNIKVVLVGTPE 126 (131)
T ss_dssp HHHH--CTEEEEEEETTHHHHTHHHHHHHHHHTCSCBEEEEEEESST
T ss_pred HHHh--cCCeEEEEeChHhcCCHHHHHHHHHHHhCCCCeEEEEEChh
Confidence 4432 23369999999765 544333332 125667788776543
No 39
>PRK06893 DNA replication initiation factor; Validated
Probab=98.59 E-value=1.1e-06 Score=86.44 Aligned_cols=146 Identities=14% Similarity=0.155 Sum_probs=90.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCCCCCHHHHHHHHHHhcCCCCCCCCChHHHHHHHHHHHH
Q 042541 186 GRQFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSKNPNVKAIVQKVLHHKGYPVPEFQTDEAAINDLERFFK 265 (695)
Q Consensus 186 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~ 265 (695)
..+.+.|+|++|+|||+|++.+++. ....... +.|+++.... ... .+.++
T Consensus 38 ~~~~l~l~G~~G~GKThL~~ai~~~--~~~~~~~-~~y~~~~~~~---~~~------------------------~~~~~ 87 (229)
T PRK06893 38 QQPFFYIWGGKSSGKSHLLKAVSNH--YLLNQRT-AIYIPLSKSQ---YFS------------------------PAVLE 87 (229)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH--HHHcCCC-eEEeeHHHhh---hhh------------------------HHHHh
Confidence 3467899999999999999999983 3333333 5677764210 000 01112
Q ss_pred hcCCCcEEEEEeCCCCCC---hH---HHhhhccC-CCCCEEE-EEcCCCCC-------------CCCCeEecCCCChHHH
Q 042541 266 QMRIEAILLVLDDVWPGS---ES---LLQKLGFQ-LPDYKIL-VTSRSEFP-------------QFGSVHYLKPLTYEAA 324 (695)
Q Consensus 266 ~l~~~~~LlVlDdv~~~~---~~---~~~~l~~~-~~gs~ii-vTtR~~~~-------------~~~~~~~l~~L~~~ea 324 (695)
.+. +.-+|++||+|... .+ +...+... ..|..+| +|+..... ..+..+++++++.++.
T Consensus 88 ~~~-~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~ 166 (229)
T PRK06893 88 NLE-QQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQK 166 (229)
T ss_pred hcc-cCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHH
Confidence 222 33589999998642 21 11222211 2355554 45544211 2244889999999999
Q ss_pred HHHHHHhccCCCCCCCCCchHHHHHHHHhcCCchhHHHHHH
Q 042541 325 RTLFLHSANLQDGNSYIPDENIVSKILRACKGCPLALKVVG 365 (695)
Q Consensus 325 ~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~~ 365 (695)
++++.+.+....- .-.+++..-|++.+.|-.-.+..+-
T Consensus 167 ~~iL~~~a~~~~l---~l~~~v~~~L~~~~~~d~r~l~~~l 204 (229)
T PRK06893 167 IIVLQRNAYQRGI---ELSDEVANFLLKRLDRDMHTLFDAL 204 (229)
T ss_pred HHHHHHHHHHcCC---CCCHHHHHHHHHhccCCHHHHHHHH
Confidence 9999988864432 2247788999999998776655443
No 40
>PLN03025 replication factor C subunit; Provisional
Probab=98.58 E-value=1.8e-06 Score=89.53 Aligned_cols=176 Identities=11% Similarity=0.097 Sum_probs=107.4
Q ss_pred CCCCCCCCcchHHHHHHHHHcCCceEEEEEcCCCCcHHHHHHHHhccccc-cccCCCcEEEEEeCCCCCHHHHHHHHHHh
Q 042541 164 PPVISPGLDVPLKELKMELFKDGRQFIVVSAPGGYGKTTLVQRLCKDDQV-QGKFKDDIFYVTVSKNPNVKAIVQKVLHH 242 (695)
Q Consensus 164 ~~~~~vGr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~-~~~f~~~~~wv~~~~~~~~~~~~~~i~~~ 242 (695)
.-+.++|.++.++.|..++..+..+.+.++|++|+||||+|+.+++ .+ ...|...++=++.++..... ..+++++.
T Consensus 11 ~l~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~G~GKTtla~~la~--~l~~~~~~~~~~eln~sd~~~~~-~vr~~i~~ 87 (319)
T PLN03025 11 KLDDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAH--ELLGPNYKEAVLELNASDDRGID-VVRNKIKM 87 (319)
T ss_pred CHHHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHH--HHhcccCccceeeecccccccHH-HHHHHHHH
Confidence 3356789888888888888777767788999999999999999987 33 22233222222223222222 12222221
Q ss_pred cCCCCCCCCChHHHHHHHHHHHHhcCCCcEEEEEeCCCCCChH----HHhhhccCCCCCEEEEEcCCCCC------CCCC
Q 042541 243 KGYPVPEFQTDEAAINDLERFFKQMRIEAILLVLDDVWPGSES----LLQKLGFQLPDYKILVTSRSEFP------QFGS 312 (695)
Q Consensus 243 l~~~~~~~~~~~~~~~~l~~~~~~l~~~~~LlVlDdv~~~~~~----~~~~l~~~~~gs~iivTtR~~~~------~~~~ 312 (695)
+..... ....++.-++|+|+++..... ++..+......+++|+++..... .-+.
T Consensus 88 ~~~~~~----------------~~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc~ 151 (319)
T PLN03025 88 FAQKKV----------------TLPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCA 151 (319)
T ss_pred HHhccc----------------cCCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhhh
Confidence 110000 000245679999999877643 22333333445777777654421 1234
Q ss_pred eEecCCCChHHHHHHHHHhccCCCCCCCCCchHHHHHHHHhcCCchhHH
Q 042541 313 VHYLKPLTYEAARTLFLHSANLQDGNSYIPDENIVSKILRACKGCPLAL 361 (695)
Q Consensus 313 ~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai 361 (695)
.+++++++.++....+...+...+.. -..+....|++.++|-...+
T Consensus 152 ~i~f~~l~~~~l~~~L~~i~~~egi~---i~~~~l~~i~~~~~gDlR~a 197 (319)
T PLN03025 152 IVRFSRLSDQEILGRLMKVVEAEKVP---YVPEGLEAIIFTADGDMRQA 197 (319)
T ss_pred cccCCCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHH
Confidence 78999999999999998877543321 13667899999999976433
No 41
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.57 E-value=3e-06 Score=88.42 Aligned_cols=173 Identities=13% Similarity=0.144 Sum_probs=106.5
Q ss_pred CCCCCCcchHHHHHHHHHcCCceEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEe--CCCCCHHHHHHHHHHhc
Q 042541 166 VISPGLDVPLKELKMELFKDGRQFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTV--SKNPNVKAIVQKVLHHK 243 (695)
Q Consensus 166 ~~~vGr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~--~~~~~~~~~~~~i~~~l 243 (695)
+.++|+++.++.+..++..+..+.+.|+|+.|+||||+|+.+++.. ....+.. .++.+ +....... ....+..+
T Consensus 17 ~~~~g~~~~~~~l~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~~~l-~~~~~~~--~~i~~~~~~~~~~~~-~~~~i~~~ 92 (319)
T PRK00440 17 DEIVGQEEIVERLKSYVKEKNMPHLLFAGPPGTGKTTAALALAREL-YGEDWRE--NFLELNASDERGIDV-IRNKIKEF 92 (319)
T ss_pred HHhcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHH-cCCcccc--ceEEeccccccchHH-HHHHHHHH
Confidence 4579999999999999987766778999999999999999998731 1222222 13333 22211111 11111111
Q ss_pred CCCCCCCCChHHHHHHHHHHHHhcCCCcEEEEEeCCCCCChH----HHhhhccCCCCCEEEEEcCCCCC------CCCCe
Q 042541 244 GYPVPEFQTDEAAINDLERFFKQMRIEAILLVLDDVWPGSES----LLQKLGFQLPDYKILVTSRSEFP------QFGSV 313 (695)
Q Consensus 244 ~~~~~~~~~~~~~~~~l~~~~~~l~~~~~LlVlDdv~~~~~~----~~~~l~~~~~gs~iivTtR~~~~------~~~~~ 313 (695)
....+ .....+-++++|+++..... +...+....+.+++|+++..... .....
T Consensus 93 ~~~~~-----------------~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr~~~ 155 (319)
T PRK00440 93 ARTAP-----------------VGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSRCAV 155 (319)
T ss_pred HhcCC-----------------CCCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHHhhe
Confidence 00000 00134668999998765432 33333334456778877754321 12237
Q ss_pred EecCCCChHHHHHHHHHhccCCCCCCCCCchHHHHHHHHhcCCchhHHH
Q 042541 314 HYLKPLTYEAARTLFLHSANLQDGNSYIPDENIVSKILRACKGCPLALK 362 (695)
Q Consensus 314 ~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~ 362 (695)
+++.+++.++....+...+..... .-.++.+..+++.++|.+.-+.
T Consensus 156 ~~~~~l~~~ei~~~l~~~~~~~~~---~i~~~al~~l~~~~~gd~r~~~ 201 (319)
T PRK00440 156 FRFSPLKKEAVAERLRYIAENEGI---EITDDALEAIYYVSEGDMRKAI 201 (319)
T ss_pred eeeCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHH
Confidence 899999999998888877654332 1236788999999999876543
No 42
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.57 E-value=1.3e-06 Score=95.29 Aligned_cols=189 Identities=12% Similarity=0.078 Sum_probs=108.6
Q ss_pred CCCCCCCcchHHHHHHHHHcCCc-eEEEEEcCCCCcHHHHHHHHhccccccccC-CCcEEEEEeCCCCCHHHHHHHHHHh
Q 042541 165 PVISPGLDVPLKELKMELFKDGR-QFIVVSAPGGYGKTTLVQRLCKDDQVQGKF-KDDIFYVTVSKNPNVKAIVQKVLHH 242 (695)
Q Consensus 165 ~~~~vGr~~~~~~l~~~L~~~~~-~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f-~~~~~wv~~~~~~~~~~~~~~i~~~ 242 (695)
-+.+||-+..++.|.+++..+.. ..+.++|+.|+||||+|+.+.+.-.-...- ..++-.-.++.+ .....|...
T Consensus 15 FddVIGQe~vv~~L~~al~~gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C----~sC~~I~aG 90 (700)
T PRK12323 15 FTTLVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQC----RACTEIDAG 90 (700)
T ss_pred HHHHcCcHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCccc----HHHHHHHcC
Confidence 34679999999999999987764 556899999999999999887631110000 000000000000 001111000
Q ss_pred -----cCCCCCCCCChHHHHHHHHHHHH-----hcCCCcEEEEEeCCCCCChH----HHhhhccCCCCCEEEEEcCCCCC
Q 042541 243 -----KGYPVPEFQTDEAAINDLERFFK-----QMRIEAILLVLDDVWPGSES----LLQKLGFQLPDYKILVTSRSEFP 308 (695)
Q Consensus 243 -----l~~~~~~~~~~~~~~~~l~~~~~-----~l~~~~~LlVlDdv~~~~~~----~~~~l~~~~~gs~iivTtR~~~~ 308 (695)
+...... ...++.++++++ ...++.-++|+|+++..... +++.+.....++++|++|.+...
T Consensus 91 ~hpDviEIdAas----~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep~k 166 (700)
T PRK12323 91 RFVDYIEMDAAS----NRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQK 166 (700)
T ss_pred CCCcceEecccc----cCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCChHh
Confidence 0000000 011222222221 12467789999999877644 45555444556777776665421
Q ss_pred CC------CCeEecCCCChHHHHHHHHHhccCCCCCCCCCchHHHHHHHHhcCCchhHHHHH
Q 042541 309 QF------GSVHYLKPLTYEAARTLFLHSANLQDGNSYIPDENIVSKILRACKGCPLALKVV 364 (695)
Q Consensus 309 ~~------~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~ 364 (695)
-. ...+.++.++.++..+.+.+.+..... ....+..+.|++.++|.|.-...+
T Consensus 167 LlpTIrSRCq~f~f~~ls~eei~~~L~~Il~~Egi---~~d~eAL~~IA~~A~Gs~RdALsL 225 (700)
T PRK12323 167 IPVTVLSRCLQFNLKQMPPGHIVSHLDAILGEEGI---AHEVNALRLLAQAAQGSMRDALSL 225 (700)
T ss_pred hhhHHHHHHHhcccCCCChHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 11 127899999999999998877643322 123566788999999998654443
No 43
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.57 E-value=1.5e-06 Score=85.74 Aligned_cols=161 Identities=19% Similarity=0.221 Sum_probs=99.9
Q ss_pred cchHHHHHHHHHcCCceEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCCCCCHHHHHHHHHHhcCCCCCCCC
Q 042541 172 DVPLKELKMELFKDGRQFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSKNPNVKAIVQKVLHHKGYPVPEFQ 251 (695)
Q Consensus 172 ~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~ 251 (695)
+..++.+..++.......|.|+|++|+|||+||+.+++. ....... +++++++.-.+. .
T Consensus 23 ~~~~~~l~~~~~~~~~~~lll~G~~G~GKT~la~~~~~~--~~~~~~~-~~~i~~~~~~~~------~------------ 81 (226)
T TIGR03420 23 AELLAALRQLAAGKGDRFLYLWGESGSGKSHLLQAACAA--AEERGKS-AIYLPLAELAQA------D------------ 81 (226)
T ss_pred HHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHH--HHhcCCc-EEEEeHHHHHHh------H------------
Confidence 346777777766666788999999999999999999873 3222222 556665532210 0
Q ss_pred ChHHHHHHHHHHHHhcCCCcEEEEEeCCCCCCh---H---HHhhhcc-CCCCCEEEEEcCCCCC-----------C--CC
Q 042541 252 TDEAAINDLERFFKQMRIEAILLVLDDVWPGSE---S---LLQKLGF-QLPDYKILVTSRSEFP-----------Q--FG 311 (695)
Q Consensus 252 ~~~~~~~~l~~~~~~l~~~~~LlVlDdv~~~~~---~---~~~~l~~-~~~gs~iivTtR~~~~-----------~--~~ 311 (695)
...+..+.+ .-+||+||++.... + +...+.. ...+..+|+||+.... . .+
T Consensus 82 ---------~~~~~~~~~-~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r~~~~ 151 (226)
T TIGR03420 82 ---------PEVLEGLEQ-ADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTRLAWG 151 (226)
T ss_pred ---------HHHHhhccc-CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHHHHhcC
Confidence 011122222 34899999975432 1 1221111 1234588898885421 0 13
Q ss_pred CeEecCCCChHHHHHHHHHhccCCCCCCCCCchHHHHHHHHhcCCchhHHHHHHH
Q 042541 312 SVHYLKPLTYEAARTLFLHSANLQDGNSYIPDENIVSKILRACKGCPLALKVVGG 366 (695)
Q Consensus 312 ~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~~~ 366 (695)
..+++++++.++...++...+..... .-.++....|++.+.|.|..+..+..
T Consensus 152 ~~i~l~~l~~~e~~~~l~~~~~~~~~---~~~~~~l~~L~~~~~gn~r~L~~~l~ 203 (226)
T TIGR03420 152 LVFQLPPLSDEEKIAALQSRAARRGL---QLPDEVADYLLRHGSRDMGSLMALLD 203 (226)
T ss_pred eeEecCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHhccCCHHHHHHHHH
Confidence 47899999999999998875432211 12367788899999999987766543
No 44
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.54 E-value=6.3e-07 Score=81.54 Aligned_cols=121 Identities=17% Similarity=0.197 Sum_probs=74.2
Q ss_pred CCCcchHHHHHHHHHcCCceEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCCCCCHHHHHHHHHHhcCCCCC
Q 042541 169 PGLDVPLKELKMELFKDGRQFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSKNPNVKAIVQKVLHHKGYPVP 248 (695)
Q Consensus 169 vGr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~ 248 (695)
+|++..++.+...+.....+.+.|+|++|+|||++++.+++. ... ....+++++..+..........+...
T Consensus 1 ~~~~~~~~~i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~~~--~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~------ 71 (151)
T cd00009 1 VGQEEAIEALREALELPPPKNLLLYGPPGTGKTTLARAIANE--LFR-PGAPFLYLNASDLLEGLVVAELFGHF------ 71 (151)
T ss_pred CchHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHH--hhc-CCCCeEEEehhhhhhhhHHHHHhhhh------
Confidence 478888999988887766788999999999999999999983 322 22336787776544322221111100
Q ss_pred CCCChHHHHHHHHHHHHhcCCCcEEEEEeCCCCCCh----HHHhhhccC------CCCCEEEEEcCCCC
Q 042541 249 EFQTDEAAINDLERFFKQMRIEAILLVLDDVWPGSE----SLLQKLGFQ------LPDYKILVTSRSEF 307 (695)
Q Consensus 249 ~~~~~~~~~~~l~~~~~~l~~~~~LlVlDdv~~~~~----~~~~~l~~~------~~gs~iivTtR~~~ 307 (695)
.. ..........++.++|+||++.... .+...+... ..+..+|+||....
T Consensus 72 --------~~-~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 --------LV-RLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred --------hH-hHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 00 0011122346788999999986421 122222222 35778888887553
No 45
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.52 E-value=2.2e-06 Score=93.68 Aligned_cols=169 Identities=17% Similarity=0.176 Sum_probs=109.0
Q ss_pred CCCCCCCcchHHHHHHHHHcCC-ceEEEEEcCCCCcHHHHHHHHhcccccc-------------------ccCCCcEEEE
Q 042541 165 PVISPGLDVPLKELKMELFKDG-RQFIVVSAPGGYGKTTLVQRLCKDDQVQ-------------------GKFKDDIFYV 224 (695)
Q Consensus 165 ~~~~vGr~~~~~~l~~~L~~~~-~~vv~I~G~gGiGKTtLa~~~~~~~~~~-------------------~~f~~~~~wv 224 (695)
-+.+||.+..++.|..++..+. ...+.++|+.|+||||+|+.+++.-.-. +.|.. ++.+
T Consensus 14 FddVIGQe~vv~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I~~g~hpD-viEI 92 (702)
T PRK14960 14 FNELVGQNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAVNEGRFID-LIEI 92 (702)
T ss_pred HHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHHhcCCCCc-eEEe
Confidence 3567999999999999998766 4677999999999999999887631100 01111 1122
Q ss_pred EeCCCCCHHHHHHHHHHhcCCCCCCCCChHHHHHHHHHHHH-----hcCCCcEEEEEeCCCCCChH----HHhhhccCCC
Q 042541 225 TVSKNPNVKAIVQKVLHHKGYPVPEFQTDEAAINDLERFFK-----QMRIEAILLVLDDVWPGSES----LLQKLGFQLP 295 (695)
Q Consensus 225 ~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~-----~l~~~~~LlVlDdv~~~~~~----~~~~l~~~~~ 295 (695)
+.+.... .+.+++++. ...++.-++|+|++...... ++..+....+
T Consensus 93 DAAs~~~-------------------------VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~ 147 (702)
T PRK14960 93 DAASRTK-------------------------VEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPE 147 (702)
T ss_pred cccccCC-------------------------HHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCC
Confidence 2111111 222233221 12466779999999877643 4444444445
Q ss_pred CCEEEEEcCCCCC------CCCCeEecCCCChHHHHHHHHHhccCCCCCCCCCchHHHHHHHHhcCCchhHHH
Q 042541 296 DYKILVTSRSEFP------QFGSVHYLKPLTYEAARTLFLHSANLQDGNSYIPDENIVSKILRACKGCPLALK 362 (695)
Q Consensus 296 gs~iivTtR~~~~------~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~ 362 (695)
+.++|++|.+... .-...+++++++.++....+.+.+..... .-..+....|++.++|.+..+.
T Consensus 148 ~v~FILaTtd~~kIp~TIlSRCq~feFkpLs~eEI~k~L~~Il~kEgI---~id~eAL~~IA~~S~GdLRdAL 217 (702)
T PRK14960 148 HVKFLFATTDPQKLPITVISRCLQFTLRPLAVDEITKHLGAILEKEQI---AADQDAIWQIAESAQGSLRDAL 217 (702)
T ss_pred CcEEEEEECChHhhhHHHHHhhheeeccCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHH
Confidence 6788887765421 22238999999999999999887654332 1246678899999999875444
No 46
>PLN03150 hypothetical protein; Provisional
Probab=98.52 E-value=1.7e-07 Score=105.79 Aligned_cols=110 Identities=17% Similarity=0.166 Sum_probs=62.8
Q ss_pred CcEEEEcccCCCCcccCcccccccCCCCcEEEeccCCCC-Ccc-cccccccccEEeeccccCCcccccchhhhcccCCCc
Q 042541 576 LKVLIVTNYGFSPAELNNFRVLSALSKLKKIRLEHVSLP-NSL-ATVRMNHLQKVSLVMCNVGQVFRNSTFRISDAFPNL 653 (695)
Q Consensus 576 Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~-~lp-~i~~l~~L~~L~l~~~~i~~~~~~~~~~l~~~l~~L 653 (695)
+..|+|.+|++.+ .+ ++.++.|++|+.|+|++|.+. .+| .++.+++|++|+|++|.+.+..|..+. .|++|
T Consensus 420 v~~L~L~~n~L~g-~i--p~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~----~L~~L 492 (623)
T PLN03150 420 IDGLGLDNQGLRG-FI--PNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLG----QLTSL 492 (623)
T ss_pred EEEEECCCCCccc-cC--CHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHh----cCCCC
Confidence 4555555554421 11 122556666666666666665 566 666666666666666666655554444 56666
Q ss_pred cEEecccccccccCchhhcCC-CCCceeecccccCCCCCC
Q 042541 654 LEMDIDYCNDLIELPDGLCDI-VSMEKLRITNCHRLSALP 692 (695)
Q Consensus 654 ~~L~l~~c~~l~~lP~~i~~L-~~L~~L~l~~~~~l~~lP 692 (695)
+.|+|++|...+.+|..++.+ .++..+++.+|+.+...|
T Consensus 493 ~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p 532 (623)
T PLN03150 493 RILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP 532 (623)
T ss_pred CEEECcCCcccccCChHHhhccccCceEEecCCccccCCC
Confidence 666666665555666665543 355566666655444433
No 47
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.51 E-value=9.3e-08 Score=72.43 Aligned_cols=56 Identities=18% Similarity=0.254 Sum_probs=26.7
Q ss_pred CCcEEEeccCCCCCcc--cccccccccEEeeccccCCcccccchhhhcccCCCccEEecccc
Q 042541 602 KLKKIRLEHVSLPNSL--ATVRMNHLQKVSLVMCNVGQVFRNSTFRISDAFPNLLEMDIDYC 661 (695)
Q Consensus 602 ~L~~L~L~~~~l~~lp--~i~~l~~L~~L~l~~~~i~~~~~~~~~~l~~~l~~L~~L~l~~c 661 (695)
+|++|++++|.++.+| .+..+++|++|++++|.++.+++..+. .+++|++|++++|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~----~l~~L~~L~l~~N 59 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFS----NLPNLRYLDLSNN 59 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTT----TSTTESEEEETSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHc----CCCCCCEEeCcCC
Confidence 3444444444444444 444455555555555544444444443 4444444444443
No 48
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.50 E-value=4e-06 Score=91.40 Aligned_cols=189 Identities=15% Similarity=0.069 Sum_probs=108.0
Q ss_pred CCCCCCcchHHHHHHHHHcCCc-eEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCCCCCHHHHHHHHHHhcC
Q 042541 166 VISPGLDVPLKELKMELFKDGR-QFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSKNPNVKAIVQKVLHHKG 244 (695)
Q Consensus 166 ~~~vGr~~~~~~l~~~L~~~~~-~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~~~~~~~~~~~i~~~l~ 244 (695)
+.++|-+..++.|..++..+.. ..+.++|++|+||||+|+.+++...-.+.+.. ..|.|.+.. .+......-+..+.
T Consensus 14 ~dvvGq~~v~~~L~~~i~~~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~-~cg~C~sc~-~i~~~~h~dv~el~ 91 (504)
T PRK14963 14 DEVVGQEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPK-PCGECESCL-AVRRGAHPDVLEID 91 (504)
T ss_pred HHhcChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCC-CCCcChhhH-HHhcCCCCceEEec
Confidence 4579999888889888887664 45699999999999999999874221122211 112222110 00000000000000
Q ss_pred CCCCCCCChHHHHHHHHHHHH--hcCCCcEEEEEeCCCCCChH----HHhhhccCCCCCEEEEEcCCCC-C-----CCCC
Q 042541 245 YPVPEFQTDEAAINDLERFFK--QMRIEAILLVLDDVWPGSES----LLQKLGFQLPDYKILVTSRSEF-P-----QFGS 312 (695)
Q Consensus 245 ~~~~~~~~~~~~~~~l~~~~~--~l~~~~~LlVlDdv~~~~~~----~~~~l~~~~~gs~iivTtR~~~-~-----~~~~ 312 (695)
.. . ....+.+..+..... ...+++-++|+|+++..... ++..+....+++.+|++|.... . ....
T Consensus 92 ~~--~-~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~~I~SRc~ 168 (504)
T PRK14963 92 AA--S-NNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPTILSRTQ 168 (504)
T ss_pred cc--c-cCCHHHHHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCChHHhcceE
Confidence 00 0 011112222322221 12356779999999876543 3444444444566666654331 1 1223
Q ss_pred eEecCCCChHHHHHHHHHhccCCCCCCCCCchHHHHHHHHhcCCchhHHH
Q 042541 313 VHYLKPLTYEAARTLFLHSANLQDGNSYIPDENIVSKILRACKGCPLALK 362 (695)
Q Consensus 313 ~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~ 362 (695)
.+++.+++.++....+.+.+...+.. -.++.+..|++.++|.+.-+.
T Consensus 169 ~~~f~~ls~~el~~~L~~i~~~egi~---i~~~Al~~ia~~s~GdlR~al 215 (504)
T PRK14963 169 HFRFRRLTEEEIAGKLRRLLEAEGRE---AEPEALQLVARLADGAMRDAE 215 (504)
T ss_pred EEEecCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHHH
Confidence 89999999999999998876543321 246778999999999886543
No 49
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.50 E-value=1.5e-07 Score=87.03 Aligned_cols=104 Identities=16% Similarity=0.225 Sum_probs=26.4
Q ss_pred CCCCcEEEEcccCCCCcccCcccccc-cCCCCcEEEeccCCCCCcccccccccccEEeeccccCCcccccchhhhcccCC
Q 042541 573 MDELKVLIVTNYGFSPAELNNFRVLS-ALSKLKKIRLEHVSLPNSLATVRMNHLQKVSLVMCNVGQVFRNSTFRISDAFP 651 (695)
Q Consensus 573 l~~Lr~L~l~~~~~~~~~~~~~~~l~-~l~~L~~L~L~~~~l~~lp~i~~l~~L~~L~l~~~~i~~~~~~~~~~l~~~l~ 651 (695)
..++|.|+|++|.+. ....++ .+.+|+.|+|++|.|..++.+..|++|++|++++|.|+.+.+.... .++
T Consensus 18 ~~~~~~L~L~~n~I~-----~Ie~L~~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~i~~~l~~----~lp 88 (175)
T PF14580_consen 18 PVKLRELNLRGNQIS-----TIENLGATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISSISEGLDK----NLP 88 (175)
T ss_dssp -----------------------S--TT-TT--EEE-TTS--S--TT----TT--EEE--SS---S-CHHHHH----H-T
T ss_pred ccccccccccccccc-----cccchhhhhcCCCEEECCCCCCccccCccChhhhhhcccCCCCCCccccchHH----hCC
Confidence 334566666655442 111233 3555666666666665555444556666666666666554432221 355
Q ss_pred CccEEecccccccccCc--hhhcCCCCCceeeccccc
Q 042541 652 NLLEMDIDYCNDLIELP--DGLCDIVSMEKLRITNCH 686 (695)
Q Consensus 652 ~L~~L~l~~c~~l~~lP--~~i~~L~~L~~L~l~~~~ 686 (695)
+|++|++++| .+..+- ..+..+++|+.|+|.+|+
T Consensus 89 ~L~~L~L~~N-~I~~l~~l~~L~~l~~L~~L~L~~NP 124 (175)
T PF14580_consen 89 NLQELYLSNN-KISDLNELEPLSSLPKLRVLSLEGNP 124 (175)
T ss_dssp T--EEE-TTS----SCCCCGGGGG-TT--EEE-TT-G
T ss_pred cCCEEECcCC-cCCChHHhHHHHcCCCcceeeccCCc
Confidence 6666666553 233322 224555666666666655
No 50
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.49 E-value=2.2e-06 Score=91.04 Aligned_cols=190 Identities=13% Similarity=0.054 Sum_probs=108.3
Q ss_pred CCCCCCCcchHHHHHHHHHcCCc-eEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCCCCCHHHHHHHHHHhc
Q 042541 165 PVISPGLDVPLKELKMELFKDGR-QFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSKNPNVKAIVQKVLHHK 243 (695)
Q Consensus 165 ~~~~vGr~~~~~~l~~~L~~~~~-~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~~~~~~~~~~~i~~~l 243 (695)
-+.+||-+..+..|..++..+.. ..+.++|+.|+||||+|+.+++ .+...-... ...+..+.+-..+...+...+
T Consensus 17 f~dvVGQe~iv~~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk--~Lnce~~~~--~~pCg~C~sC~~i~~g~~~dv 92 (484)
T PRK14956 17 FRDVIHQDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAK--RLNCENPIG--NEPCNECTSCLEITKGISSDV 92 (484)
T ss_pred HHHHhChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHH--hcCcccccC--ccccCCCcHHHHHHccCCccc
Confidence 34679999999999998887765 4589999999999999999987 332111000 111122222222211110000
Q ss_pred CCCCCCCCChHHHHHHHHHHH--HhcCCCcEEEEEeCCCCCChH----HHhhhccCCCCCEEEEEcCCCCCC------CC
Q 042541 244 GYPVPEFQTDEAAINDLERFF--KQMRIEAILLVLDDVWPGSES----LLQKLGFQLPDYKILVTSRSEFPQ------FG 311 (695)
Q Consensus 244 ~~~~~~~~~~~~~~~~l~~~~--~~l~~~~~LlVlDdv~~~~~~----~~~~l~~~~~gs~iivTtR~~~~~------~~ 311 (695)
..-........+.+..+.+.+ ....++.-++|+|+++..... ++..+........+|++|.....- -.
T Consensus 93 iEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~~TI~SRC 172 (484)
T PRK14956 93 LEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIPETILSRC 172 (484)
T ss_pred eeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhccHHHHhhh
Confidence 000000001111222222222 123467779999999877654 334343333455666555543211 11
Q ss_pred CeEecCCCChHHHHHHHHHhccCCCCCCCCCchHHHHHHHHhcCCchhHH
Q 042541 312 SVHYLKPLTYEAARTLFLHSANLQDGNSYIPDENIVSKILRACKGCPLAL 361 (695)
Q Consensus 312 ~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai 361 (695)
..|.+.+++.++..+.+.+.+...+. .-..+....|++.++|.+.-+
T Consensus 173 q~~~f~~ls~~~i~~~L~~i~~~Egi---~~e~eAL~~Ia~~S~Gd~RdA 219 (484)
T PRK14956 173 QDFIFKKVPLSVLQDYSEKLCKIENV---QYDQEGLFWIAKKGDGSVRDM 219 (484)
T ss_pred heeeecCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCChHHHH
Confidence 26999999999999988887654322 124678899999999998543
No 51
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.49 E-value=7.5e-06 Score=85.70 Aligned_cols=195 Identities=12% Similarity=0.038 Sum_probs=111.4
Q ss_pred CCCCCCCCCCCcchHHHHHHHHHcCCc-eEEEEEcCCCCcHHHHHHHHhccccccccCCCcEE---EEEeCCCCCHHHHH
Q 042541 161 APDPPVISPGLDVPLKELKMELFKDGR-QFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIF---YVTVSKNPNVKAIV 236 (695)
Q Consensus 161 ~~~~~~~~vGr~~~~~~l~~~L~~~~~-~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~---wv~~~~~~~~~~~~ 236 (695)
.|.....++|-+...+.+.+.+..+.. ..+.++|+.|+||+|+|..+++.---......... -.++.. ...-...
T Consensus 14 ~P~~~~~iiGq~~~~~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~-~~~c~~c 92 (365)
T PRK07471 14 HPRETTALFGHAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAI-DPDHPVA 92 (365)
T ss_pred CCCchhhccChHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccC-CCCChHH
Confidence 444556789999999999999887764 45889999999999999887762100010000000 000000 0000111
Q ss_pred HHHHHhcCCCC--------CCCC---ChHHHHHHHHHHHHhc-----CCCcEEEEEeCCCCCChH----HHhhhccCCCC
Q 042541 237 QKVLHHKGYPV--------PEFQ---TDEAAINDLERFFKQM-----RIEAILLVLDDVWPGSES----LLQKLGFQLPD 296 (695)
Q Consensus 237 ~~i~~~l~~~~--------~~~~---~~~~~~~~l~~~~~~l-----~~~~~LlVlDdv~~~~~~----~~~~l~~~~~g 296 (695)
+.+... ..+. .+.. ...-.+++++++.+.+ .+++.++|+||++..... +++.+....++
T Consensus 93 ~~i~~~-~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEepp~~ 171 (365)
T PRK07471 93 RRIAAG-AHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEPPAR 171 (365)
T ss_pred HHHHcc-CCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcCCCC
Confidence 111111 0000 0000 0111234444444332 367789999999877644 44555544456
Q ss_pred CEEEEEcCCCCC------CCCCeEecCCCChHHHHHHHHHhccCCCCCCCCCchHHHHHHHHhcCCchhHHHHH
Q 042541 297 YKILVTSRSEFP------QFGSVHYLKPLTYEAARTLFLHSANLQDGNSYIPDENIVSKILRACKGCPLALKVV 364 (695)
Q Consensus 297 s~iivTtR~~~~------~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~ 364 (695)
+.+|++|..... .-...+.+.+++.++..+++...... ...+....+++.++|.|+....+
T Consensus 172 ~~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~-------~~~~~~~~l~~~s~Gsp~~Al~l 238 (365)
T PRK07471 172 SLFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPD-------LPDDPRAALAALAEGSVGRALRL 238 (365)
T ss_pred eEEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhccc-------CCHHHHHHHHHHcCCCHHHHHHH
Confidence 777777766521 11238999999999999999875311 12233378899999999866554
No 52
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.48 E-value=4e-06 Score=87.25 Aligned_cols=193 Identities=16% Similarity=0.142 Sum_probs=113.4
Q ss_pred CCCCCCCCCCCcchHHHHHHHHHcCC-ceEEEEEcCCCCcHHHHHHHHhcccccccc----CCCcEEEEEeCCCCCHHHH
Q 042541 161 APDPPVISPGLDVPLKELKMELFKDG-RQFIVVSAPGGYGKTTLVQRLCKDDQVQGK----FKDDIFYVTVSKNPNVKAI 235 (695)
Q Consensus 161 ~~~~~~~~vGr~~~~~~l~~~L~~~~-~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~----f~~~~~wv~~~~~~~~~~~ 235 (695)
.|.....++|-+...+.+...+..+. ...+.|+|+.|+||||+|..+++. +-.. +.. . .....+..-..
T Consensus 18 ~P~~~~~l~Gh~~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~--Llc~~~~~~~~-~---~~~~~~~~c~~ 91 (351)
T PRK09112 18 SPSENTRLFGHEEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANH--ILSHPDPAEAP-E---TLADPDPASPV 91 (351)
T ss_pred CCCchhhccCcHHHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHH--HcCCCccccCc-c---ccCCCCCCCHH
Confidence 45566778999999999999998766 456899999999999999988873 2211 111 0 00111111112
Q ss_pred HHHHHHh-------cCCCCCCC------CChHHHHHHHHHHHH--hcCCCcEEEEEeCCCCCChH----HHhhhccCCCC
Q 042541 236 VQKVLHH-------KGYPVPEF------QTDEAAINDLERFFK--QMRIEAILLVLDDVWPGSES----LLQKLGFQLPD 296 (695)
Q Consensus 236 ~~~i~~~-------l~~~~~~~------~~~~~~~~~l~~~~~--~l~~~~~LlVlDdv~~~~~~----~~~~l~~~~~g 296 (695)
.+.+... +..+.... .-..+.+..+.+.+. ...++.-++|+|+++..... ++..+.....+
T Consensus 92 c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~ 171 (351)
T PRK09112 92 WRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPAR 171 (351)
T ss_pred HHHHHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCCCC
Confidence 2333221 11110000 001122233333331 22467789999999877643 44555444445
Q ss_pred CEEEEEcCCCC-C-----CCCCeEecCCCChHHHHHHHHHhccCCCCCCCCCchHHHHHHHHhcCCchhHHHHH
Q 042541 297 YKILVTSRSEF-P-----QFGSVHYLKPLTYEAARTLFLHSANLQDGNSYIPDENIVSKILRACKGCPLALKVV 364 (695)
Q Consensus 297 s~iivTtR~~~-~-----~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~ 364 (695)
+.+|++|.... . .-...+++.+++.++..+++...... . . -.++.+..|++.++|.|.....+
T Consensus 172 ~~fiLit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~--~--~-~~~~~~~~i~~~s~G~pr~Al~l 240 (351)
T PRK09112 172 ALFILISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSS--Q--G-SDGEITEALLQRSKGSVRKALLL 240 (351)
T ss_pred ceEEEEECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhcc--c--C-CCHHHHHHHHHHcCCCHHHHHHH
Confidence 55555554331 1 11238999999999999999874311 1 1 22566889999999999866544
No 53
>PF13173 AAA_14: AAA domain
Probab=98.48 E-value=7.4e-07 Score=79.06 Aligned_cols=113 Identities=25% Similarity=0.368 Sum_probs=72.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCCCCCHHHHHHHHHHhcCCCCCCCCChHHHHHHHHHHH-H
Q 042541 187 RQFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSKNPNVKAIVQKVLHHKGYPVPEFQTDEAAINDLERFF-K 265 (695)
Q Consensus 187 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~-~ 265 (695)
.+++.|.|+.|+|||||+++++.+.. -+..++++++.+......... + +.+.+ +
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~----~~~~~~yi~~~~~~~~~~~~~--------------------~-~~~~~~~ 56 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLL----PPENILYINFDDPRDRRLADP--------------------D-LLEYFLE 56 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc----ccccceeeccCCHHHHHHhhh--------------------h-hHHHHHH
Confidence 36899999999999999999987422 122367887765432110000 0 11222 2
Q ss_pred hcCCCcEEEEEeCCCCCChH--HHhhhccCCCCCEEEEEcCCCCC--------CCCC--eEecCCCChHHH
Q 042541 266 QMRIEAILLVLDDVWPGSES--LLQKLGFQLPDYKILVTSRSEFP--------QFGS--VHYLKPLTYEAA 324 (695)
Q Consensus 266 ~l~~~~~LlVlDdv~~~~~~--~~~~l~~~~~gs~iivTtR~~~~--------~~~~--~~~l~~L~~~ea 324 (695)
...++..+++||++....+| .+..+....++.+|++|+.+... -.|. .+++.||+..|-
T Consensus 57 ~~~~~~~~i~iDEiq~~~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 57 LIKPGKKYIFIDEIQYLPDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred hhccCCcEEEEehhhhhccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 23457889999999877654 34445555567899999987621 1222 688999987763
No 54
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.48 E-value=1.7e-07 Score=105.89 Aligned_cols=145 Identities=17% Similarity=0.117 Sum_probs=89.0
Q ss_pred ccceEEeeecCCcccCCCCCCCCCceEEEEEEccCccccCChhhcCCCCCcEEEEcccCCCCcccCccc-c---------
Q 042541 527 NNASLLSISTDETFSSNWPDMQGPEVKVVVLNIRTKKYVLPDFLQKMDELKVLIVTNYGFSPAELNNFR-V--------- 596 (695)
Q Consensus 527 ~~~r~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~p~~~~~l~~Lr~L~l~~~~~~~~~~~~~~-~--------- 596 (695)
...+.|.+..+.... .+. ..++|+.|.++.|... .+|.. ..+|++|+|++|.+.. ++..+ .
T Consensus 302 ~~L~~LdLS~N~L~~-Lp~--lp~~L~~L~Ls~N~L~-~LP~l---p~~Lq~LdLS~N~Ls~--LP~lp~~L~~L~Ls~N 372 (788)
T PRK15387 302 PGLQELSVSDNQLAS-LPA--LPSELCKLWAYNNQLT-SLPTL---PSGLQELSVSDNQLAS--LPTLPSELYKLWAYNN 372 (788)
T ss_pred cccceeECCCCcccc-CCC--CcccccccccccCccc-ccccc---ccccceEecCCCccCC--CCCCCcccceehhhcc
Confidence 456777766543221 111 1234555555554332 23321 1357777777765532 11100 0
Q ss_pred -cc----cCCCCcEEEeccCCCCCcc-cccccccccEEeeccccCCcccccchhhhcccCCCccEEecccccccccCchh
Q 042541 597 -LS----ALSKLKKIRLEHVSLPNSL-ATVRMNHLQKVSLVMCNVGQVFRNSTFRISDAFPNLLEMDIDYCNDLIELPDG 670 (695)
Q Consensus 597 -l~----~l~~L~~L~L~~~~l~~lp-~i~~l~~L~~L~l~~~~i~~~~~~~~~~l~~~l~~L~~L~l~~c~~l~~lP~~ 670 (695)
+. ...+|+.|++++|.+..+| . ..+|+.|++++|.++.+|. .+.+|+.|++++| .+..+|.+
T Consensus 373 ~L~~LP~l~~~L~~LdLs~N~Lt~LP~l---~s~L~~LdLS~N~LssIP~--------l~~~L~~L~Ls~N-qLt~LP~s 440 (788)
T PRK15387 373 RLTSLPALPSGLKELIVSGNRLTSLPVL---PSELKELMVSGNRLTSLPM--------LPSGLLSLSVYRN-QLTRLPES 440 (788)
T ss_pred ccccCcccccccceEEecCCcccCCCCc---ccCCCEEEccCCcCCCCCc--------chhhhhhhhhccC-cccccChH
Confidence 00 1235777888888777777 3 2467788888888777653 2346788999985 57899999
Q ss_pred hcCCCCCceeecccccCCCCCC
Q 042541 671 LCDIVSMEKLRITNCHRLSALP 692 (695)
Q Consensus 671 i~~L~~L~~L~l~~~~~l~~lP 692 (695)
++++++|+.|+|++|+.-+..|
T Consensus 441 l~~L~~L~~LdLs~N~Ls~~~~ 462 (788)
T PRK15387 441 LIHLSSETTVNLEGNPLSERTL 462 (788)
T ss_pred HhhccCCCeEECCCCCCCchHH
Confidence 9999999999999988655544
No 55
>PLN03150 hypothetical protein; Provisional
Probab=98.47 E-value=1.7e-07 Score=105.93 Aligned_cols=89 Identities=17% Similarity=0.222 Sum_probs=80.0
Q ss_pred CCcEEEeccCCCC-Ccc-cccccccccEEeeccccCCcccccchhhhcccCCCccEEecccccccccCchhhcCCCCCce
Q 042541 602 KLKKIRLEHVSLP-NSL-ATVRMNHLQKVSLVMCNVGQVFRNSTFRISDAFPNLLEMDIDYCNDLIELPDGLCDIVSMEK 679 (695)
Q Consensus 602 ~L~~L~L~~~~l~-~lp-~i~~l~~L~~L~l~~~~i~~~~~~~~~~l~~~l~~L~~L~l~~c~~l~~lP~~i~~L~~L~~ 679 (695)
.+..|+|++|.+. .+| .+++|++|++|+|++|.+.+..|..+. .+++|+.|+|++|...+.+|..+++|++|++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~----~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~ 494 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLG----SITSLEVLDLSYNSFNGSIPESLGQLTSLRI 494 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHh----CCCCCCEEECCCCCCCCCCchHHhcCCCCCE
Confidence 3788999999998 888 999999999999999999876665555 8999999999999877899999999999999
Q ss_pred eecccccCCCCCCCC
Q 042541 680 LRITNCHRLSALPEG 694 (695)
Q Consensus 680 L~l~~~~~l~~lP~~ 694 (695)
|+|++|+..+.+|..
T Consensus 495 L~Ls~N~l~g~iP~~ 509 (623)
T PLN03150 495 LNLNGNSLSGRVPAA 509 (623)
T ss_pred EECcCCcccccCChH
Confidence 999999988899865
No 56
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.47 E-value=2.2e-07 Score=88.41 Aligned_cols=73 Identities=12% Similarity=0.247 Sum_probs=41.8
Q ss_pred CCCCcchHHHHHHHHH---cCCceEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCCCC-----CHHHHHHHH
Q 042541 168 SPGLDVPLKELKMELF---KDGRQFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSKNP-----NVKAIVQKV 239 (695)
Q Consensus 168 ~vGr~~~~~~l~~~L~---~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~~~-----~~~~~~~~i 239 (695)
||||+++++++...|. ....+.+.|+|++|+|||+|+++++. ++...... ++.+.+.... ....+++++
T Consensus 2 fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l 78 (185)
T PF13191_consen 2 FVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLD--RLAERGGY-VISINCDDSERNPYSPFRSALRQL 78 (185)
T ss_dssp -TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHH--HHHHHT---EEEEEEETTTS-HHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHH--HHHhcCCE-EEEEEEeccccchhhHHHHHHHHH
Confidence 7999999999999993 44579999999999999999999988 44444222 3344444331 124555555
Q ss_pred HHhc
Q 042541 240 LHHK 243 (695)
Q Consensus 240 ~~~l 243 (695)
+.++
T Consensus 79 ~~~~ 82 (185)
T PF13191_consen 79 IDQL 82 (185)
T ss_dssp S---
T ss_pred HHHh
Confidence 5543
No 57
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.47 E-value=1.7e-08 Score=105.33 Aligned_cols=132 Identities=20% Similarity=0.296 Sum_probs=104.0
Q ss_pred CCceEEEEEEccCccccCChhhcCCCCCcEEEEcccCCCCcccCcccccccCCCCcEEEeccCCCCCcc-cccccccccE
Q 042541 549 GPEVKVVVLNIRTKKYVLPDFLQKMDELKVLIVTNYGFSPAELNNFRVLSALSKLKKIRLEHVSLPNSL-ATVRMNHLQK 627 (695)
Q Consensus 549 ~~~l~~L~l~~~~~~~~~p~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~lp-~i~~l~~L~~ 627 (695)
+..|+.|+|+.|.. ..+|..+..++ |++|.++||.+.. ++ +.++.+..|..|+.+.|.+..+| .++.|.+|+.
T Consensus 120 L~~lt~l~ls~Nql-S~lp~~lC~lp-Lkvli~sNNkl~~--lp--~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~ 193 (722)
T KOG0532|consen 120 LEALTFLDLSSNQL-SHLPDGLCDLP-LKVLIVSNNKLTS--LP--EEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRD 193 (722)
T ss_pred hhHHHHhhhccchh-hcCChhhhcCc-ceeEEEecCcccc--CC--cccccchhHHHhhhhhhhhhhchHHhhhHHHHHH
Confidence 44555666655533 34566666666 8999999887632 22 22677888999999999999999 9999999999
Q ss_pred EeeccccCCcccccchhhhcccCCCccEEecccccccccCchhhcCCCCCceeecccccCCCCCCCC
Q 042541 628 VSLVMCNVGQVFRNSTFRISDAFPNLLEMDIDYCNDLIELPDGLCDIVSMEKLRITNCHRLSALPEG 694 (695)
Q Consensus 628 L~l~~~~i~~~~~~~~~~l~~~l~~L~~L~l~~c~~l~~lP~~i~~L~~L~~L~l~~~~~l~~lP~~ 694 (695)
|+++.|.+..+|+... .| .|..||++ |+++..||-.|.+|+.|++|-|.+|+ |.+-|..
T Consensus 194 l~vrRn~l~~lp~El~-----~L-pLi~lDfS-cNkis~iPv~fr~m~~Lq~l~LenNP-LqSPPAq 252 (722)
T KOG0532|consen 194 LNVRRNHLEDLPEELC-----SL-PLIRLDFS-CNKISYLPVDFRKMRHLQVLQLENNP-LQSPPAQ 252 (722)
T ss_pred HHHhhhhhhhCCHHHh-----CC-ceeeeecc-cCceeecchhhhhhhhheeeeeccCC-CCCChHH
Confidence 9999999999888775 23 38899999 57899999999999999999999977 8777754
No 58
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.47 E-value=1.9e-08 Score=96.82 Aligned_cols=131 Identities=15% Similarity=0.247 Sum_probs=100.4
Q ss_pred CCceEEEEEEccCccccCChhhcCCCCCcEEEEcccCCCCcccCcccccccCCCCcEEEeccCCCCCcc-cccccccccE
Q 042541 549 GPEVKVVVLNIRTKKYVLPDFLQKMDELKVLIVTNYGFSPAELNNFRVLSALSKLKKIRLEHVSLPNSL-ATVRMNHLQK 627 (695)
Q Consensus 549 ~~~l~~L~l~~~~~~~~~p~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~lp-~i~~l~~L~~ 627 (695)
+..|+.++|++|. ...+.++++-.+.+|.|+++.|++. ...++..|++|..|+|++|.++++- .--+|-|..+
T Consensus 283 Wq~LtelDLS~N~-I~~iDESvKL~Pkir~L~lS~N~i~-----~v~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKt 356 (490)
T KOG1259|consen 283 WQELTELDLSGNL-ITQIDESVKLAPKLRRLILSQNRIR-----TVQNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKT 356 (490)
T ss_pred Hhhhhhccccccc-hhhhhhhhhhccceeEEecccccee-----eehhhhhcccceEeecccchhHhhhhhHhhhcCEee
Confidence 3456777777663 3455667788899999999998763 2233778899999999999988776 5557888999
Q ss_pred EeeccccCCcccccchhhhcccCCCccEEecccccccccCc--hhhcCCCCCceeecccccCCCCCCC
Q 042541 628 VSLVMCNVGQVFRNSTFRISDAFPNLLEMDIDYCNDLIELP--DGLCDIVSMEKLRITNCHRLSALPE 693 (695)
Q Consensus 628 L~l~~~~i~~~~~~~~~~l~~~l~~L~~L~l~~c~~l~~lP--~~i~~L~~L~~L~l~~~~~l~~lP~ 693 (695)
|.|.+|.|..+ .+.. +|.+|..||+++| ++..+. .+||+|+.|++|.|.+|+ +..+|.
T Consensus 357 L~La~N~iE~L-SGL~-----KLYSLvnLDl~~N-~Ie~ldeV~~IG~LPCLE~l~L~~NP-l~~~vd 416 (490)
T KOG1259|consen 357 LKLAQNKIETL-SGLR-----KLYSLVNLDLSSN-QIEELDEVNHIGNLPCLETLRLTGNP-LAGSVD 416 (490)
T ss_pred eehhhhhHhhh-hhhH-----hhhhheecccccc-chhhHHHhcccccccHHHHHhhcCCC-ccccch
Confidence 99999987653 2222 7999999999985 456554 469999999999999987 666553
No 59
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.46 E-value=4.4e-06 Score=92.66 Aligned_cols=188 Identities=18% Similarity=0.084 Sum_probs=109.2
Q ss_pred CCCCCCCcchHHHHHHHHHcCCc-eEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCCCCCHHHHHHHHHHhc
Q 042541 165 PVISPGLDVPLKELKMELFKDGR-QFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSKNPNVKAIVQKVLHHK 243 (695)
Q Consensus 165 ~~~~vGr~~~~~~l~~~L~~~~~-~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~~~~~~~~~~~i~~~l 243 (695)
-+.+||-+..++.|...+..+.. ..+.++|+.|+||||+|+.+++. +..... ...-.+..+ ...+.|...-
T Consensus 15 f~divGQe~vv~~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~--L~c~~~--~~~~pCg~C----~~C~~i~~g~ 86 (647)
T PRK07994 15 FAEVVGQEHVLTALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKG--LNCETG--ITATPCGEC----DNCREIEQGR 86 (647)
T ss_pred HHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHh--hhhccC--CCCCCCCCC----HHHHHHHcCC
Confidence 35679999999999988887664 44689999999999999998873 211100 000001111 1111111100
Q ss_pred C-----CCCCCCCChHHHHHHHHHHH--HhcCCCcEEEEEeCCCCCChH----HHhhhccCCCCCEEEEEcCCCCCCC--
Q 042541 244 G-----YPVPEFQTDEAAINDLERFF--KQMRIEAILLVLDDVWPGSES----LLQKLGFQLPDYKILVTSRSEFPQF-- 310 (695)
Q Consensus 244 ~-----~~~~~~~~~~~~~~~l~~~~--~~l~~~~~LlVlDdv~~~~~~----~~~~l~~~~~gs~iivTtR~~~~~~-- 310 (695)
. .........++ +..+...+ ....++.-++|+|+++..... +++.+....+.+++|++|.+...-.
T Consensus 87 ~~D~ieidaas~~~Vdd-iR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~kLl~T 165 (647)
T PRK07994 87 FVDLIEIDAASRTKVED-TRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVT 165 (647)
T ss_pred CCCceeecccccCCHHH-HHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCccccchH
Confidence 0 00000001111 12222211 223577789999999877643 4555555555677777666552111
Q ss_pred ----CCeEecCCCChHHHHHHHHHhccCCCCCCCCCchHHHHHHHHhcCCchhHHHHH
Q 042541 311 ----GSVHYLKPLTYEAARTLFLHSANLQDGNSYIPDENIVSKILRACKGCPLALKVV 364 (695)
Q Consensus 311 ----~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~ 364 (695)
...|.+++++.++....+.+.+..... ....+....|++.++|.+.-+..+
T Consensus 166 I~SRC~~~~f~~Ls~~ei~~~L~~il~~e~i---~~e~~aL~~Ia~~s~Gs~R~Al~l 220 (647)
T PRK07994 166 ILSRCLQFHLKALDVEQIRQQLEHILQAEQI---PFEPRALQLLARAADGSMRDALSL 220 (647)
T ss_pred HHhhheEeeCCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 238999999999999998876533221 123566788999999988644443
No 60
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.45 E-value=4.4e-06 Score=92.30 Aligned_cols=170 Identities=16% Similarity=0.180 Sum_probs=108.0
Q ss_pred CCCCCCCcchHHHHHHHHHcCC-ceEEEEEcCCCCcHHHHHHHHhccccccc-------------------cCCCcEEEE
Q 042541 165 PVISPGLDVPLKELKMELFKDG-RQFIVVSAPGGYGKTTLVQRLCKDDQVQG-------------------KFKDDIFYV 224 (695)
Q Consensus 165 ~~~~vGr~~~~~~l~~~L~~~~-~~vv~I~G~gGiGKTtLa~~~~~~~~~~~-------------------~f~~~~~wv 224 (695)
-+.+||.+..++.|..++..+. ...+.++|+.|+||||+|+.+.+.---.. .|.. ++.+
T Consensus 15 FddIIGQe~vv~~L~~ai~~~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i~~g~~~D-vlEi 93 (709)
T PRK08691 15 FADLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQIDAGRYVD-LLEI 93 (709)
T ss_pred HHHHcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHHhccCccc-eEEE
Confidence 3567999999999999998766 45689999999999999998876211010 0111 1122
Q ss_pred EeCCCCCHHHHHHHHHHhcCCCCCCCCChHHHHHHHHHHHHh-----cCCCcEEEEEeCCCCCChH----HHhhhccCCC
Q 042541 225 TVSKNPNVKAIVQKVLHHKGYPVPEFQTDEAAINDLERFFKQ-----MRIEAILLVLDDVWPGSES----LLQKLGFQLP 295 (695)
Q Consensus 225 ~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~~-----l~~~~~LlVlDdv~~~~~~----~~~~l~~~~~ 295 (695)
+...... .+.++++++. ..+++-++|+|++...... +++.+.....
T Consensus 94 daAs~~g-------------------------Vd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~ 148 (709)
T PRK08691 94 DAASNTG-------------------------IDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPE 148 (709)
T ss_pred eccccCC-------------------------HHHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCCC
Confidence 1111111 1222222211 2356779999999876643 4444544445
Q ss_pred CCEEEEEcCCCCCCC------CCeEecCCCChHHHHHHHHHhccCCCCCCCCCchHHHHHHHHhcCCchhHHHH
Q 042541 296 DYKILVTSRSEFPQF------GSVHYLKPLTYEAARTLFLHSANLQDGNSYIPDENIVSKILRACKGCPLALKV 363 (695)
Q Consensus 296 gs~iivTtR~~~~~~------~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~ 363 (695)
.+++|++|.+..... ...+.+.+++.++....+.+.+...+. .-..+....|++.++|.+.-+..
T Consensus 149 ~v~fILaTtd~~kL~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi---~id~eAL~~Ia~~A~GslRdAln 219 (709)
T PRK08691 149 HVKFILATTDPHKVPVTVLSRCLQFVLRNMTAQQVADHLAHVLDSEKI---AYEPPALQLLGRAAAGSMRDALS 219 (709)
T ss_pred CcEEEEEeCCccccchHHHHHHhhhhcCCCCHHHHHHHHHHHHHHcCC---CcCHHHHHHHHHHhCCCHHHHHH
Confidence 677887776542211 126788899999999999877654332 12466789999999998854443
No 61
>PRK04195 replication factor C large subunit; Provisional
Probab=98.45 E-value=2.2e-05 Score=86.29 Aligned_cols=175 Identities=14% Similarity=0.156 Sum_probs=110.2
Q ss_pred CCCCCCCCcchHHHHHHHHHc---C-CceEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCCCCCHHHHHHHH
Q 042541 164 PPVISPGLDVPLKELKMELFK---D-GRQFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSKNPNVKAIVQKV 239 (695)
Q Consensus 164 ~~~~~vGr~~~~~~l~~~L~~---~-~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~~~~~~~~~~~i 239 (695)
.-+.++|.+..++++..|+.. + ..+.+.|+|++|+||||+|+.+++. . .|+ ++-++.++..+... +..+
T Consensus 12 ~l~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~e--l--~~~--~ielnasd~r~~~~-i~~~ 84 (482)
T PRK04195 12 TLSDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALAND--Y--GWE--VIELNASDQRTADV-IERV 84 (482)
T ss_pred CHHHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHH--c--CCC--EEEEcccccccHHH-HHHH
Confidence 345689999999999999873 2 2688999999999999999999983 2 122 44555554433322 2233
Q ss_pred HHhcCCCCCCCCChHHHHHHHHHHHHhcC-CCcEEEEEeCCCCCCh----H----HHhhhccCCCCCEEEEEcCCCC---
Q 042541 240 LHHKGYPVPEFQTDEAAINDLERFFKQMR-IEAILLVLDDVWPGSE----S----LLQKLGFQLPDYKILVTSRSEF--- 307 (695)
Q Consensus 240 ~~~l~~~~~~~~~~~~~~~~l~~~~~~l~-~~~~LlVlDdv~~~~~----~----~~~~l~~~~~gs~iivTtR~~~--- 307 (695)
+...... ..+. .++.+||+|+++.... . +...+. ..+..||+|+.+..
T Consensus 85 i~~~~~~------------------~sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~--~~~~~iIli~n~~~~~~ 144 (482)
T PRK04195 85 AGEAATS------------------GSLFGARRKLILLDEVDGIHGNEDRGGARAILELIK--KAKQPIILTANDPYDPS 144 (482)
T ss_pred HHHhhcc------------------CcccCCCCeEEEEecCcccccccchhHHHHHHHHHH--cCCCCEEEeccCccccc
Confidence 2222110 0111 3678999999976532 1 222222 23455676665431
Q ss_pred ----CCCCCeEecCCCChHHHHHHHHHhccCCCCCCCCCchHHHHHHHHhcCCchhHHHHHHHhh
Q 042541 308 ----PQFGSVHYLKPLTYEAARTLFLHSANLQDGNSYIPDENIVSKILRACKGCPLALKVVGGSL 368 (695)
Q Consensus 308 ----~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~~~~L 368 (695)
......+.+.+++.++....+...+...... -..+....|++.++|-...+......+
T Consensus 145 ~k~Lrsr~~~I~f~~~~~~~i~~~L~~i~~~egi~---i~~eaL~~Ia~~s~GDlR~ain~Lq~~ 206 (482)
T PRK04195 145 LRELRNACLMIEFKRLSTRSIVPVLKRICRKEGIE---CDDEALKEIAERSGGDLRSAINDLQAI 206 (482)
T ss_pred hhhHhccceEEEecCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 1123478999999999999888776543322 236789999999999776555433333
No 62
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.42 E-value=9e-06 Score=84.21 Aligned_cols=169 Identities=12% Similarity=0.116 Sum_probs=106.7
Q ss_pred CCCCCcchHHHHHHHHHcCC-ceEEEEEcCCCCcHHHHHHHHhccc----cccccCCCcEEEEEe-CCCCCHHHHHHHHH
Q 042541 167 ISPGLDVPLKELKMELFKDG-RQFIVVSAPGGYGKTTLVQRLCKDD----QVQGKFKDDIFYVTV-SKNPNVKAIVQKVL 240 (695)
Q Consensus 167 ~~vGr~~~~~~l~~~L~~~~-~~vv~I~G~gGiGKTtLa~~~~~~~----~~~~~f~~~~~wv~~-~~~~~~~~~~~~i~ 240 (695)
.++|-+..++.+...+..+. .....++|+.|+||||+|+.++..- ....|.+. ..|... +.....++ .+++.
T Consensus 5 ~i~g~~~~~~~l~~~~~~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~-~~~~~~~~~~i~v~~-ir~~~ 82 (313)
T PRK05564 5 TIIGHENIKNRIKNSIIKNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDI-IEFKPINKKSIGVDD-IRNII 82 (313)
T ss_pred hccCcHHHHHHHHHHHHcCCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCe-EEeccccCCCCCHHH-HHHHH
Confidence 46898888899999988665 4567899999999999999988721 11233332 223221 12222222 22222
Q ss_pred HhcCCCCCCCCChHHHHHHHHHHHHhcCCCcEEEEEeCCCCCChH----HHhhhccCCCCCEEEEEcCCCCC------CC
Q 042541 241 HHKGYPVPEFQTDEAAINDLERFFKQMRIEAILLVLDDVWPGSES----LLQKLGFQLPDYKILVTSRSEFP------QF 310 (695)
Q Consensus 241 ~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~~~LlVlDdv~~~~~~----~~~~l~~~~~gs~iivTtR~~~~------~~ 310 (695)
+.+... ...+++-++|+|+++..... ++..+....+++.+|++|.+... .-
T Consensus 83 ~~~~~~-------------------p~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~SR 143 (313)
T PRK05564 83 EEVNKK-------------------PYEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKSR 143 (313)
T ss_pred HHHhcC-------------------cccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHHhh
Confidence 222111 11356678888887655532 55666666678888888865521 12
Q ss_pred CCeEecCCCChHHHHHHHHHhccCCCCCCCCCchHHHHHHHHhcCCchhHHHH
Q 042541 311 GSVHYLKPLTYEAARTLFLHSANLQDGNSYIPDENIVSKILRACKGCPLALKV 363 (695)
Q Consensus 311 ~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~ 363 (695)
+..+.+.++++++....+.+... ....+.+..++..++|.|.-+..
T Consensus 144 c~~~~~~~~~~~~~~~~l~~~~~-------~~~~~~~~~l~~~~~g~~~~a~~ 189 (313)
T PRK05564 144 CQIYKLNRLSKEEIEKFISYKYN-------DIKEEEKKSAIAFSDGIPGKVEK 189 (313)
T ss_pred ceeeeCCCcCHHHHHHHHHHHhc-------CCCHHHHHHHHHHcCCCHHHHHH
Confidence 23889999999999888866532 11245577899999999875543
No 63
>PRK08727 hypothetical protein; Validated
Probab=98.42 E-value=8.5e-06 Score=80.29 Aligned_cols=161 Identities=19% Similarity=0.153 Sum_probs=96.6
Q ss_pred CCCCCcchHHHHHHHHHcCCceEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCCCCCHHHHHHHHHHhcCCC
Q 042541 167 ISPGLDVPLKELKMELFKDGRQFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSKNPNVKAIVQKVLHHKGYP 246 (695)
Q Consensus 167 ~~vGr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~~~~~~~~~~~i~~~l~~~ 246 (695)
+++|-...+..+...........+.|+|..|+|||.|++.+++ ....... .+.|+++.+ ....
T Consensus 21 f~~~~~n~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~a~~~--~~~~~~~-~~~y~~~~~------~~~~-------- 83 (233)
T PRK08727 21 YIAAPDGLLAQLQALAAGQSSDWLYLSGPAGTGKTHLALALCA--AAEQAGR-SSAYLPLQA------AAGR-------- 83 (233)
T ss_pred ccCCcHHHHHHHHHHHhccCCCeEEEECCCCCCHHHHHHHHHH--HHHHcCC-cEEEEeHHH------hhhh--------
Confidence 3344434444444433333446799999999999999999988 3333322 256776432 1111
Q ss_pred CCCCCChHHHHHHHHHHHHhcCCCcEEEEEeCCCCCC---hH---HHhhhcc-CCCCCEEEEEcCCCCCC----------
Q 042541 247 VPEFQTDEAAINDLERFFKQMRIEAILLVLDDVWPGS---ES---LLQKLGF-QLPDYKILVTSRSEFPQ---------- 309 (695)
Q Consensus 247 ~~~~~~~~~~~~~l~~~~~~l~~~~~LlVlDdv~~~~---~~---~~~~l~~-~~~gs~iivTtR~~~~~---------- 309 (695)
+...++.+ .+.-+||+||+.... .+ +...+.. ...|..||+||+.....
T Consensus 84 -------------~~~~~~~l-~~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~S 149 (233)
T PRK08727 84 -------------LRDALEAL-EGRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRS 149 (233)
T ss_pred -------------HHHHHHHH-hcCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHH
Confidence 11111222 234589999986432 11 2221111 12367799999976221
Q ss_pred ---CCCeEecCCCChHHHHHHHHHhccCCCCCCCCCchHHHHHHHHhcCCchhHH
Q 042541 310 ---FGSVHYLKPLTYEAARTLFLHSANLQDGNSYIPDENIVSKILRACKGCPLAL 361 (695)
Q Consensus 310 ---~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai 361 (695)
.+..+++++++.++-.+++.+++....- .-.++....|++.++|-.-.+
T Consensus 150 Rl~~~~~~~l~~~~~e~~~~iL~~~a~~~~l---~l~~e~~~~La~~~~rd~r~~ 201 (233)
T PRK08727 150 RLAQCIRIGLPVLDDVARAAVLRERAQRRGL---ALDEAAIDWLLTHGERELAGL 201 (233)
T ss_pred HHhcCceEEecCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHhCCCCHHHH
Confidence 1348899999999999999987654322 224678889999998765544
No 64
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.41 E-value=6.9e-06 Score=89.76 Aligned_cols=172 Identities=18% Similarity=0.148 Sum_probs=105.8
Q ss_pred CCCCCCcchHHHHHHHHHcCCc-eEEEEEcCCCCcHHHHHHHHhccccccc---------------------cCCCcEEE
Q 042541 166 VISPGLDVPLKELKMELFKDGR-QFIVVSAPGGYGKTTLVQRLCKDDQVQG---------------------KFKDDIFY 223 (695)
Q Consensus 166 ~~~vGr~~~~~~l~~~L~~~~~-~vv~I~G~gGiGKTtLa~~~~~~~~~~~---------------------~f~~~~~w 223 (695)
+.++|-+..++.|...+..+.. ..+.++|+.|+||||+|+.+++. +.. .|.. +++
T Consensus 16 ~diiGq~~~v~~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~--L~c~~~~~~~pCg~C~sC~~i~~~~~~d-lie 92 (546)
T PRK14957 16 AEVAGQQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKC--LNCKTGVTAEPCNKCENCVAINNNSFID-LIE 92 (546)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHH--hCCCCCCCCCCCcccHHHHHHhcCCCCc-eEE
Confidence 4579999999999998886654 55789999999999999998862 211 1222 223
Q ss_pred EEeCCCCCHHHHHHHHHHhcCCCCCCCCChHHHHHHHHHHHH--hcCCCcEEEEEeCCCCCChH----HHhhhccCCCCC
Q 042541 224 VTVSKNPNVKAIVQKVLHHKGYPVPEFQTDEAAINDLERFFK--QMRIEAILLVLDDVWPGSES----LLQKLGFQLPDY 297 (695)
Q Consensus 224 v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~--~l~~~~~LlVlDdv~~~~~~----~~~~l~~~~~gs 297 (695)
++......+.+ ...+...+. ...+++-++|+|++...... ++..+......+
T Consensus 93 idaas~~gvd~----------------------ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v 150 (546)
T PRK14957 93 IDAASRTGVEE----------------------TKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYV 150 (546)
T ss_pred eecccccCHHH----------------------HHHHHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCc
Confidence 32221111111 111111111 12467779999999776543 444444444566
Q ss_pred EEEEEcCCCC-C-----CCCCeEecCCCChHHHHHHHHHhccCCCCCCCCCchHHHHHHHHhcCCchh-HHHHHH
Q 042541 298 KILVTSRSEF-P-----QFGSVHYLKPLTYEAARTLFLHSANLQDGNSYIPDENIVSKILRACKGCPL-ALKVVG 365 (695)
Q Consensus 298 ~iivTtR~~~-~-----~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PL-ai~~~~ 365 (695)
.+|++|.+.. . .-+..+++.+++.++....+.+.+...+. ...++....|++.++|-+. |+..+-
T Consensus 151 ~fIL~Ttd~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~egi---~~e~~Al~~Ia~~s~GdlR~alnlLe 222 (546)
T PRK14957 151 KFILATTDYHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKENI---NSDEQSLEYIAYHAKGSLRDALSLLD 222 (546)
T ss_pred eEEEEECChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 6665554431 1 11348999999999988888875543221 1246677899999999664 444443
No 65
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.41 E-value=8.1e-07 Score=101.11 Aligned_cols=150 Identities=17% Similarity=0.194 Sum_probs=81.4
Q ss_pred cceEEeeecCCcccCCCCCCCCCceEEEEEEccCccccCChhhcCCCCCcEEEEcccCCCCcccCcccccccCCCCcEEE
Q 042541 528 NASLLSISTDETFSSNWPDMQGPEVKVVVLNIRTKKYVLPDFLQKMDELKVLIVTNYGFSPAELNNFRVLSALSKLKKIR 607 (695)
Q Consensus 528 ~~r~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~p~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~ 607 (695)
+.+.|.+..+.. ...+ ..-.++|+.|.++.|... .+|..+. .+|+.|++++|.+. .++. .+ ..+|++|+
T Consensus 221 nL~~L~Ls~N~L-tsLP-~~l~~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~--~LP~--~l--~~sL~~L~ 289 (754)
T PRK15370 221 NIKTLYANSNQL-TSIP-ATLPDTIQEMELSINRIT-ELPERLP--SALQSLDLFHNKIS--CLPE--NL--PEELRYLS 289 (754)
T ss_pred CCCEEECCCCcc-ccCC-hhhhccccEEECcCCccC-cCChhHh--CCCCEEECcCCccC--cccc--cc--CCCCcEEE
Confidence 456666554321 1111 112345667777666433 5565543 46777777776553 1211 12 24688888
Q ss_pred eccCCCCCcc-cccccccccEEeeccccCCcccccchh-------------hhcc-cCCCccEEecccccccccCchhhc
Q 042541 608 LEHVSLPNSL-ATVRMNHLQKVSLVMCNVGQVFRNSTF-------------RISD-AFPNLLEMDIDYCNDLIELPDGLC 672 (695)
Q Consensus 608 L~~~~l~~lp-~i~~l~~L~~L~l~~~~i~~~~~~~~~-------------~l~~-~l~~L~~L~l~~c~~l~~lP~~i~ 672 (695)
+++|+++.+| .+. .+|++|++++|.++.+|+.... .+|. ..++|+.|++++| .+..+|..+.
T Consensus 290 Ls~N~Lt~LP~~lp--~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N-~L~~LP~~lp 366 (754)
T PRK15370 290 VYDNSIRTLPAHLP--SGITHLNVQSNSLTALPETLPPGLKTLEAGENALTSLPASLPPELQVLDVSKN-QITVLPETLP 366 (754)
T ss_pred CCCCccccCcccch--hhHHHHHhcCCccccCCccccccceeccccCCccccCChhhcCcccEEECCCC-CCCcCChhhc
Confidence 8888777766 432 2444445555444443322110 0010 1246777778775 4567776553
Q ss_pred CCCCCceeecccccCCCCCCCC
Q 042541 673 DIVSMEKLRITNCHRLSALPEG 694 (695)
Q Consensus 673 ~L~~L~~L~l~~~~~l~~lP~~ 694 (695)
++|+.|+|++|+ +..+|+.
T Consensus 367 --~~L~~LdLs~N~-Lt~LP~~ 385 (754)
T PRK15370 367 --PTITTLDVSRNA-LTNLPEN 385 (754)
T ss_pred --CCcCEEECCCCc-CCCCCHh
Confidence 578888888865 7777754
No 66
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.41 E-value=5.5e-06 Score=90.56 Aligned_cols=175 Identities=18% Similarity=0.154 Sum_probs=107.6
Q ss_pred CCCCCCCcchHHHHHHHHHcCCc-eEEEEEcCCCCcHHHHHHHHhcccccc-------------------ccCCCcEEEE
Q 042541 165 PVISPGLDVPLKELKMELFKDGR-QFIVVSAPGGYGKTTLVQRLCKDDQVQ-------------------GKFKDDIFYV 224 (695)
Q Consensus 165 ~~~~vGr~~~~~~l~~~L~~~~~-~vv~I~G~gGiGKTtLa~~~~~~~~~~-------------------~~f~~~~~wv 224 (695)
-+.+||-+..++.|..++..+.. ..+.++|+.|+||||+|+.+++.---. +.|.. ++.+
T Consensus 15 f~divGq~~v~~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d-~~ei 93 (509)
T PRK14958 15 FQEVIGQAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPD-LFEV 93 (509)
T ss_pred HHHhcCCHHHHHHHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCce-EEEE
Confidence 34679999999999999987664 457899999999999999887631111 11222 2233
Q ss_pred EeCCCCCHHHHHHHHHHhcCCCCCCCCChHHHHHHHHHHHHhcCCCcEEEEEeCCCCCChH----HHhhhccCCCCCEEE
Q 042541 225 TVSKNPNVKAIVQKVLHHKGYPVPEFQTDEAAINDLERFFKQMRIEAILLVLDDVWPGSES----LLQKLGFQLPDYKIL 300 (695)
Q Consensus 225 ~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~~~LlVlDdv~~~~~~----~~~~l~~~~~gs~ii 300 (695)
+.+....++++ +++++.+.. ....++.-++|+|+++..... +++.+....+.+++|
T Consensus 94 daas~~~v~~i-R~l~~~~~~-------------------~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fI 153 (509)
T PRK14958 94 DAASRTKVEDT-RELLDNIPY-------------------APTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFI 153 (509)
T ss_pred cccccCCHHHH-HHHHHHHhh-------------------ccccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEE
Confidence 32222222221 122222111 112466779999999876643 445555555577777
Q ss_pred EEcCCCCC------CCCCeEecCCCChHHHHHHHHHhccCCCCCCCCCchHHHHHHHHhcCCchhHHHH
Q 042541 301 VTSRSEFP------QFGSVHYLKPLTYEAARTLFLHSANLQDGNSYIPDENIVSKILRACKGCPLALKV 363 (695)
Q Consensus 301 vTtR~~~~------~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~ 363 (695)
++|.+... .-...+++++++.++....+...+...+. .-..+....|++.++|.+.-+..
T Consensus 154 lattd~~kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~egi---~~~~~al~~ia~~s~GslR~al~ 219 (509)
T PRK14958 154 LATTDHHKLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENV---EFENAALDLLARAANGSVRDALS 219 (509)
T ss_pred EEECChHhchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCcHHHHHH
Confidence 76654421 11237889999999988877766543322 11356678899999998864443
No 67
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.41 E-value=7.8e-06 Score=86.28 Aligned_cols=165 Identities=15% Similarity=0.143 Sum_probs=102.6
Q ss_pred CCCCCcchHHHHHHHHHcCC----------ceEEEEEcCCCCcHHHHHHHHhcccccc------------------ccCC
Q 042541 167 ISPGLDVPLKELKMELFKDG----------RQFIVVSAPGGYGKTTLVQRLCKDDQVQ------------------GKFK 218 (695)
Q Consensus 167 ~~vGr~~~~~~l~~~L~~~~----------~~vv~I~G~gGiGKTtLa~~~~~~~~~~------------------~~f~ 218 (695)
.++|-+..++.|..++..+. ..-+.++|+.|+|||++|+.++..---. ..++
T Consensus 6 ~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~~hp 85 (394)
T PRK07940 6 DLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAGTHP 85 (394)
T ss_pred hccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCC
Confidence 46898888999999888653 4568899999999999999887621000 0111
Q ss_pred CcEEEEEeCCCCCHHHHHHHHHHhcCCCCCCCCChHHHHHHHHHHHHh-----cCCCcEEEEEeCCCCCChH----HHhh
Q 042541 219 DDIFYVTVSKNPNVKAIVQKVLHHKGYPVPEFQTDEAAINDLERFFKQ-----MRIEAILLVLDDVWPGSES----LLQK 289 (695)
Q Consensus 219 ~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~~-----l~~~~~LlVlDdv~~~~~~----~~~~ 289 (695)
. +.++..... ...+++++.+.+. ..+++-++|+|+++..... +++.
T Consensus 86 D-~~~i~~~~~------------------------~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~ 140 (394)
T PRK07940 86 D-VRVVAPEGL------------------------SIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKA 140 (394)
T ss_pred C-EEEeccccc------------------------cCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHH
Confidence 1 212211100 0011222222211 2356668899999877643 4555
Q ss_pred hccCCCCCEEEEEcCCCCC------CCCCeEecCCCChHHHHHHHHHhccCCCCCCCCCchHHHHHHHHhcCCchhHHHH
Q 042541 290 LGFQLPDYKILVTSRSEFP------QFGSVHYLKPLTYEAARTLFLHSANLQDGNSYIPDENIVSKILRACKGCPLALKV 363 (695)
Q Consensus 290 l~~~~~gs~iivTtR~~~~------~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~ 363 (695)
+....+++.+|++|.+... .-...+.+++++.++..+.+.+... ...+.+..++..++|.|.....
T Consensus 141 LEep~~~~~fIL~a~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~~--------~~~~~a~~la~~s~G~~~~A~~ 212 (394)
T PRK07940 141 VEEPPPRTVWLLCAPSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRDG--------VDPETARRAARASQGHIGRARR 212 (394)
T ss_pred hhcCCCCCeEEEEECChHHChHHHHhhCeEEECCCCCHHHHHHHHHHhcC--------CCHHHHHHHHHHcCCCHHHHHH
Confidence 5555567777777666521 1123889999999999988874321 1245688899999999975544
Q ss_pred H
Q 042541 364 V 364 (695)
Q Consensus 364 ~ 364 (695)
+
T Consensus 213 l 213 (394)
T PRK07940 213 L 213 (394)
T ss_pred H
Confidence 3
No 68
>PF14516 AAA_35: AAA-like domain
Probab=98.40 E-value=0.0002 Score=74.53 Aligned_cols=202 Identities=16% Similarity=0.195 Sum_probs=123.8
Q ss_pred CCCCCCCCCCCCCCcchHHHHHHHHHcCCceEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCCC-----CCH
Q 042541 158 CCSAPDPPVISPGLDVPLKELKMELFKDGRQFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSKN-----PNV 232 (695)
Q Consensus 158 ~~~~~~~~~~~vGr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~~-----~~~ 232 (695)
.+++|......|.|...-+++.+.|.+++ ..+.|.|+-.+|||+|...+.+..+- ..|. ++++++... .+.
T Consensus 3 ~g~~~~~~~~Yi~R~~~e~~~~~~i~~~G-~~~~I~apRq~GKTSll~~l~~~l~~-~~~~--~v~id~~~~~~~~~~~~ 78 (331)
T PF14516_consen 3 GGPLPLDSPFYIERPPAEQECYQEIVQPG-SYIRIKAPRQMGKTSLLLRLLERLQQ-QGYR--CVYIDLQQLGSAIFSDL 78 (331)
T ss_pred CCCCCCCCCcccCchHHHHHHHHHHhcCC-CEEEEECcccCCHHHHHHHHHHHHHH-CCCE--EEEEEeecCCCcccCCH
Confidence 34566666777999966677777777643 68999999999999999998873222 3343 568988752 245
Q ss_pred HHHHHHH----HHhcCCCCCC-------CCChHHHHHHHHHHH-HhcCCCcEEEEEeCCCCCCh------HHHhhhcc--
Q 042541 233 KAIVQKV----LHHKGYPVPE-------FQTDEAAINDLERFF-KQMRIEAILLVLDDVWPGSE------SLLQKLGF-- 292 (695)
Q Consensus 233 ~~~~~~i----~~~l~~~~~~-------~~~~~~~~~~l~~~~-~~l~~~~~LlVlDdv~~~~~------~~~~~l~~-- 292 (695)
..+++.+ .++++....- ..........+.+.+ .. .+++.+|++|+++.... .++..+..
T Consensus 79 ~~f~~~~~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~-~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~ 157 (331)
T PF14516_consen 79 EQFLRWFCEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQ-IDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWY 157 (331)
T ss_pred HHHHHHHHHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhc-CCCCEEEEEechhhhccCcchHHHHHHHHHHHH
Confidence 5555444 4455443210 011112222333333 22 37899999999965432 12222111
Q ss_pred -C---CC--C-CEEEEEcCCC--C--------CCCCCeEecCCCChHHHHHHHHHhccCCCCCCCCCchHHHHHHHHhcC
Q 042541 293 -Q---LP--D-YKILVTSRSE--F--------PQFGSVHYLKPLTYEAARTLFLHSANLQDGNSYIPDENIVSKILRACK 355 (695)
Q Consensus 293 -~---~~--g-s~iivTtR~~--~--------~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~ 355 (695)
. .+ . -++++....+ . -..+..++|++++.+|...|+.+.-.. -..+..++|...+|
T Consensus 158 ~~~~~~~~~~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~-------~~~~~~~~l~~~tg 230 (331)
T PF14516_consen 158 EQRKNNPIWQKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLE-------FSQEQLEQLMDWTG 230 (331)
T ss_pred HhcccCcccceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhcc-------CCHHHHHHHHHHHC
Confidence 1 11 1 1222221111 0 022348899999999999998876321 12344999999999
Q ss_pred CchhHHHHHHHhhCCC
Q 042541 356 GCPLALKVVGGSLCGK 371 (695)
Q Consensus 356 G~PLai~~~~~~L~~~ 371 (695)
|+|.-+..++..+...
T Consensus 231 GhP~Lv~~~~~~l~~~ 246 (331)
T PF14516_consen 231 GHPYLVQKACYLLVEE 246 (331)
T ss_pred CCHHHHHHHHHHHHHc
Confidence 9999999999988654
No 69
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.39 E-value=1.2e-05 Score=76.58 Aligned_cols=152 Identities=20% Similarity=0.212 Sum_probs=91.5
Q ss_pred HHHHHHHcCCc-eEEEEEcCCCCcHHHHHHHHhccccccc---------------------cCCCcEEEEEeCCC-CCHH
Q 042541 177 ELKMELFKDGR-QFIVVSAPGGYGKTTLVQRLCKDDQVQG---------------------KFKDDIFYVTVSKN-PNVK 233 (695)
Q Consensus 177 ~l~~~L~~~~~-~vv~I~G~gGiGKTtLa~~~~~~~~~~~---------------------~f~~~~~wv~~~~~-~~~~ 233 (695)
.+.+.+..+.. ..+.++|+.|+||||+|+.+.. .+.. .++. ..++..... ...
T Consensus 3 ~l~~~i~~~~~~~~~L~~G~~G~gkt~~a~~~~~--~l~~~~~~~~~~c~~~~~c~~~~~~~~~d-~~~~~~~~~~~~~- 78 (188)
T TIGR00678 3 QLKRALEKGRLAHAYLFAGPEGVGKELLALALAK--ALLCEQPGGGEPCGECPSCRLIEAGNHPD-LHRLEPEGQSIKV- 78 (188)
T ss_pred HHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHH--HHcCCCCCCCCCCCCCHHHHHHHcCCCCc-EEEeccccCcCCH-
Confidence 45566666654 6789999999999999998876 3221 1111 122222111 111
Q ss_pred HHHHHHHHhcCCCCCCCCChHHHHHHHHHHHHhcCCCcEEEEEeCCCCCChH----HHhhhccCCCCCEEEEEcCCCC--
Q 042541 234 AIVQKVLHHKGYPVPEFQTDEAAINDLERFFKQMRIEAILLVLDDVWPGSES----LLQKLGFQLPDYKILVTSRSEF-- 307 (695)
Q Consensus 234 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~~~LlVlDdv~~~~~~----~~~~l~~~~~gs~iivTtR~~~-- 307 (695)
+..+++++.+.. ....+.+-++|+||+...... ++..+....+.+.+|++|++..
T Consensus 79 ~~i~~i~~~~~~-------------------~~~~~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l 139 (188)
T TIGR00678 79 DQVRELVEFLSR-------------------TPQESGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKL 139 (188)
T ss_pred HHHHHHHHHHcc-------------------CcccCCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhC
Confidence 111111221111 011356778999999776543 4444544445677777776541
Q ss_pred ----CCCCCeEecCCCChHHHHHHHHHhccCCCCCCCCCchHHHHHHHHhcCCchhH
Q 042541 308 ----PQFGSVHYLKPLTYEAARTLFLHSANLQDGNSYIPDENIVSKILRACKGCPLA 360 (695)
Q Consensus 308 ----~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLa 360 (695)
......+.+.+++.++..+.+.+. + -.++.+..|++.++|.|..
T Consensus 140 ~~~i~sr~~~~~~~~~~~~~~~~~l~~~--g-------i~~~~~~~i~~~~~g~~r~ 187 (188)
T TIGR00678 140 LPTIRSRCQVLPFPPLSEEALLQWLIRQ--G-------ISEEAAELLLALAGGSPGA 187 (188)
T ss_pred hHHHHhhcEEeeCCCCCHHHHHHHHHHc--C-------CCHHHHHHHHHHcCCCccc
Confidence 112238999999999999988876 1 1256799999999998853
No 70
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.39 E-value=3.6e-06 Score=95.33 Aligned_cols=170 Identities=16% Similarity=0.174 Sum_probs=98.4
Q ss_pred CCCCCCCCcchHH---HHHHHHHcCCceEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCCCCCHHHHHHHHH
Q 042541 164 PPVISPGLDVPLK---ELKMELFKDGRQFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSKNPNVKAIVQKVL 240 (695)
Q Consensus 164 ~~~~~vGr~~~~~---~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~~~~~~~~~~~i~ 240 (695)
.-+.++|.+..+. .+...+..+....+.|+|++|+||||||+.+++ .....|. .++... ....++ +
T Consensus 26 tldd~vGQe~ii~~~~~L~~~i~~~~~~slLL~GPpGtGKTTLA~aIA~--~~~~~f~----~lna~~-~~i~di-r--- 94 (725)
T PRK13341 26 TLEEFVGQDHILGEGRLLRRAIKADRVGSLILYGPPGVGKTTLARIIAN--HTRAHFS----SLNAVL-AGVKDL-R--- 94 (725)
T ss_pred cHHHhcCcHHHhhhhHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHH--HhcCcce----eehhhh-hhhHHH-H---
Confidence 3356799888774 566667777777889999999999999999997 3433331 111110 001000 0
Q ss_pred HhcCCCCCCCCChHHHHHHHHHHHHhcCCCcEEEEEeCCCCCChHHHhhhccCC-CCCEEEEE--cCCCCC-------CC
Q 042541 241 HHKGYPVPEFQTDEAAINDLERFFKQMRIEAILLVLDDVWPGSESLLQKLGFQL-PDYKILVT--SRSEFP-------QF 310 (695)
Q Consensus 241 ~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~~-~gs~iivT--tR~~~~-------~~ 310 (695)
.........+. ..+++.+|++||++.........+.... .|+.++|+ |.+... .-
T Consensus 95 --------------~~i~~a~~~l~-~~~~~~IL~IDEIh~Ln~~qQdaLL~~lE~g~IiLI~aTTenp~~~l~~aL~SR 159 (725)
T PRK13341 95 --------------AEVDRAKERLE-RHGKRTILFIDEVHRFNKAQQDALLPWVENGTITLIGATTENPYFEVNKALVSR 159 (725)
T ss_pred --------------HHHHHHHHHhh-hcCCceEEEEeChhhCCHHHHHHHHHHhcCceEEEEEecCCChHhhhhhHhhcc
Confidence 11111111111 1256789999999766543333333222 34445543 333211 11
Q ss_pred CCeEecCCCChHHHHHHHHHhccCCC----CCCCCCchHHHHHHHHhcCCchh
Q 042541 311 GSVHYLKPLTYEAARTLFLHSANLQD----GNSYIPDENIVSKILRACKGCPL 359 (695)
Q Consensus 311 ~~~~~l~~L~~~ea~~Lf~~~~~~~~----~~~~~~~~~~~~~I~~~c~G~PL 359 (695)
...+.+++++.++...++.+.+.... .....-.++....|++.+.|.-.
T Consensus 160 ~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD~R 212 (725)
T PRK13341 160 SRLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGDAR 212 (725)
T ss_pred ccceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCCHH
Confidence 34799999999999999987664110 00111236678889999998754
No 71
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.37 E-value=9.7e-06 Score=87.29 Aligned_cols=174 Identities=18% Similarity=0.178 Sum_probs=110.2
Q ss_pred CCCCCCCcchHHHHHHHHHcCCc-eEEEEEcCCCCcHHHHHHHHhccc------c------------cc-ccCCCcEEEE
Q 042541 165 PVISPGLDVPLKELKMELFKDGR-QFIVVSAPGGYGKTTLVQRLCKDD------Q------------VQ-GKFKDDIFYV 224 (695)
Q Consensus 165 ~~~~vGr~~~~~~l~~~L~~~~~-~vv~I~G~gGiGKTtLa~~~~~~~------~------------~~-~~f~~~~~wv 224 (695)
-+.+||-+..++.+...+..+.. ..+.++|+.|+||||+|+.++..- . +. +.+.. ++.+
T Consensus 12 f~dliGQe~vv~~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~D-v~ei 90 (491)
T PRK14964 12 FKDLVGQDVLVRILRNAFTLNKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPD-VIEI 90 (491)
T ss_pred HHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCC-EEEE
Confidence 34679999888888888887665 478999999999999999887510 0 00 11122 4444
Q ss_pred EeCCCCCHHHHHHHHHHhcCCCCCCCCChHHHHHHHHHHHHhcCCCcEEEEEeCCCCCChH----HHhhhccCCCCCEEE
Q 042541 225 TVSKNPNVKAIVQKVLHHKGYPVPEFQTDEAAINDLERFFKQMRIEAILLVLDDVWPGSES----LLQKLGFQLPDYKIL 300 (695)
Q Consensus 225 ~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~~~LlVlDdv~~~~~~----~~~~l~~~~~gs~ii 300 (695)
+.+....+.++ +++++.... .-..++.-++|+|++...... +++.+....+.+++|
T Consensus 91 daas~~~vddI-R~Iie~~~~-------------------~P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fI 150 (491)
T PRK14964 91 DAASNTSVDDI-KVILENSCY-------------------LPISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFI 150 (491)
T ss_pred ecccCCCHHHH-HHHHHHHHh-------------------ccccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEE
Confidence 44433333221 222222110 011356779999999776543 455555555677777
Q ss_pred EEcCCCC------CCCCCeEecCCCChHHHHHHHHHhccCCCCCCCCCchHHHHHHHHhcCCchhHHH
Q 042541 301 VTSRSEF------PQFGSVHYLKPLTYEAARTLFLHSANLQDGNSYIPDENIVSKILRACKGCPLALK 362 (695)
Q Consensus 301 vTtR~~~------~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~ 362 (695)
++|.... ..-...+.+.+++.++....+.+.+..... .-.++.+..|++.++|.+..+.
T Consensus 151 latte~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi---~i~~eAL~lIa~~s~GslR~al 215 (491)
T PRK14964 151 LATTEVKKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKENI---EHDEESLKLIAENSSGSMRNAL 215 (491)
T ss_pred EEeCChHHHHHHHHHhheeeecccccHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHH
Confidence 7664331 112337899999999999999887754332 1236678899999999876443
No 72
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.37 E-value=4.4e-06 Score=82.96 Aligned_cols=170 Identities=15% Similarity=0.125 Sum_probs=104.9
Q ss_pred CCCCCcchH---HHHHHHHHcCCceEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCCCCCHHHHHHHHHHhc
Q 042541 167 ISPGLDVPL---KELKMELFKDGRQFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSKNPNVKAIVQKVLHHK 243 (695)
Q Consensus 167 ~~vGr~~~~---~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~~~~~~~~~~~i~~~l 243 (695)
..||.+..+ --|...+.++..+-+.+||++|+||||||+.+... .+.+- ..+|.+|....-..-.+.|+++.
T Consensus 139 dyvGQ~hlv~q~gllrs~ieq~~ipSmIlWGppG~GKTtlArlia~t--sk~~S---yrfvelSAt~a~t~dvR~ife~a 213 (554)
T KOG2028|consen 139 DYVGQSHLVGQDGLLRSLIEQNRIPSMILWGPPGTGKTTLARLIAST--SKKHS---YRFVELSATNAKTNDVRDIFEQA 213 (554)
T ss_pred HhcchhhhcCcchHHHHHHHcCCCCceEEecCCCCchHHHHHHHHhh--cCCCc---eEEEEEeccccchHHHHHHHHHH
Confidence 345544322 33445566778888999999999999999999873 33331 55888876654444444554442
Q ss_pred CCCCCCCCChHHHHHHHHHHHHhcCCCcEEEEEeCCCCCChHHHhhhccC-CCCCEEEE--EcCCCCCC-------CCCe
Q 042541 244 GYPVPEFQTDEAAINDLERFFKQMRIEAILLVLDDVWPGSESLLQKLGFQ-LPDYKILV--TSRSEFPQ-------FGSV 313 (695)
Q Consensus 244 ~~~~~~~~~~~~~~~~l~~~~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~-~~gs~iiv--TtR~~~~~-------~~~~ 313 (695)
. . ...+.+++.+|.+|.|..-....-+.|.+. ..|.-++| ||.+..-. -..+
T Consensus 214 q-----------------~-~~~l~krkTilFiDEiHRFNksQQD~fLP~VE~G~I~lIGATTENPSFqln~aLlSRC~V 275 (554)
T KOG2028|consen 214 Q-----------------N-EKSLTKRKTILFIDEIHRFNKSQQDTFLPHVENGDITLIGATTENPSFQLNAALLSRCRV 275 (554)
T ss_pred H-----------------H-HHhhhcceeEEEeHHhhhhhhhhhhcccceeccCceEEEecccCCCccchhHHHHhccce
Confidence 1 1 123468899999999965543333444443 34666666 66665321 1238
Q ss_pred EecCCCChHHHHHHHHHhcc--CC----CCCCCCC----chHHHHHHHHhcCCchh
Q 042541 314 HYLKPLTYEAARTLFLHSAN--LQ----DGNSYIP----DENIVSKILRACKGCPL 359 (695)
Q Consensus 314 ~~l~~L~~~ea~~Lf~~~~~--~~----~~~~~~~----~~~~~~~I~~~c~G~PL 359 (695)
+.|++|..++-..++.+... +. ....+.. ...+.+-++..|.|-..
T Consensus 276 fvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdGDaR 331 (554)
T KOG2028|consen 276 FVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDAR 331 (554)
T ss_pred eEeccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCchHH
Confidence 99999999999999887332 11 1111221 23466667777888643
No 73
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.36 E-value=1.2e-05 Score=86.89 Aligned_cols=178 Identities=17% Similarity=0.143 Sum_probs=104.2
Q ss_pred CCCCCCCcchHHHHHHHHHcCCc-eEEEEEcCCCCcHHHHHHHHhcccccccc--C-CC---------------cEEEEE
Q 042541 165 PVISPGLDVPLKELKMELFKDGR-QFIVVSAPGGYGKTTLVQRLCKDDQVQGK--F-KD---------------DIFYVT 225 (695)
Q Consensus 165 ~~~~vGr~~~~~~l~~~L~~~~~-~vv~I~G~gGiGKTtLa~~~~~~~~~~~~--f-~~---------------~~~wv~ 225 (695)
-+.+||.+...+.|...+..+.. ..+.++|++|+||||+|+.+++.-.-... + ++ .++.++
T Consensus 13 ~~divGq~~i~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv~el~ 92 (472)
T PRK14962 13 FSEVVGQDHVKKLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDVIELD 92 (472)
T ss_pred HHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCccEEEe
Confidence 35679998888888888877665 56899999999999999999773111000 0 00 022222
Q ss_pred eCCCCCHHHHHHHHHHhcCCCCCCCCChHHHHHHHHHHHH--hcCCCcEEEEEeCCCCCChH----HHhhhccCCCCCEE
Q 042541 226 VSKNPNVKAIVQKVLHHKGYPVPEFQTDEAAINDLERFFK--QMRIEAILLVLDDVWPGSES----LLQKLGFQLPDYKI 299 (695)
Q Consensus 226 ~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~--~l~~~~~LlVlDdv~~~~~~----~~~~l~~~~~gs~i 299 (695)
.+....... ...+..... ...+++-++|+|+++..... ++..+....+.+.+
T Consensus 93 aa~~~gid~----------------------iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~ 150 (472)
T PRK14962 93 AASNRGIDE----------------------IRKIRDAVGYRPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVF 150 (472)
T ss_pred CcccCCHHH----------------------HHHHHHHHhhChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEE
Confidence 221111111 112222111 12356779999999765432 33334333334455
Q ss_pred EEEcCCCC------CCCCCeEecCCCChHHHHHHHHHhccCCCCCCCCCchHHHHHHHHhcCC-chhHHHHHHHh
Q 042541 300 LVTSRSEF------PQFGSVHYLKPLTYEAARTLFLHSANLQDGNSYIPDENIVSKILRACKG-CPLALKVVGGS 367 (695)
Q Consensus 300 ivTtR~~~------~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~G-~PLai~~~~~~ 367 (695)
|++|.... ......+.+.+++.++....+.+.+..... .-.++....|++.++| .+.++..+-.+
T Consensus 151 Ilattn~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi---~i~~eal~~Ia~~s~GdlR~aln~Le~l 222 (472)
T PRK14962 151 VLATTNLEKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEGI---EIDREALSFIAKRASGGLRDALTMLEQV 222 (472)
T ss_pred EEEeCChHhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 44444321 112248899999999999988887643322 1236678889998865 56777766553
No 74
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.35 E-value=6e-06 Score=89.65 Aligned_cols=188 Identities=15% Similarity=0.157 Sum_probs=105.8
Q ss_pred CCCCCCCcchHHHHHHHHHcCC-ceEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCCCCCHHHHHHH---HH
Q 042541 165 PVISPGLDVPLKELKMELFKDG-RQFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSKNPNVKAIVQK---VL 240 (695)
Q Consensus 165 ~~~~vGr~~~~~~l~~~L~~~~-~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~~~~~~~~~~~---i~ 240 (695)
-..+||-+..++.|...+..+. ...+.++|+.|+||||+|+.+++.-.-......+--+..+..+.+-..+... -+
T Consensus 20 f~dliGq~~vv~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C~~C~~i~~~~h~Dv 99 (507)
T PRK06645 20 FAELQGQEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQCTNCISFNNHNHPDI 99 (507)
T ss_pred HHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCChHHHHHhcCCCCcE
Confidence 3457999998998888777665 4678899999999999999998731111100000000111111110110000 00
Q ss_pred HhcCCCCCCCCChHHHHHHHHHHHH-----hcCCCcEEEEEeCCCCCChH----HHhhhccCCCCCEEEEEcCCC-CC--
Q 042541 241 HHKGYPVPEFQTDEAAINDLERFFK-----QMRIEAILLVLDDVWPGSES----LLQKLGFQLPDYKILVTSRSE-FP-- 308 (695)
Q Consensus 241 ~~l~~~~~~~~~~~~~~~~l~~~~~-----~l~~~~~LlVlDdv~~~~~~----~~~~l~~~~~gs~iivTtR~~-~~-- 308 (695)
..+.... ....+.++.+++ -..+++-++|+|+++..... ++..+....+.+.+|++|... ..
T Consensus 100 ~eidaas------~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTte~~kI~~ 173 (507)
T PRK06645 100 IEIDAAS------KTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQKIPA 173 (507)
T ss_pred EEeeccC------CCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeCChHHhhH
Confidence 0000000 001222233221 12467789999999876543 344444444566766554332 11
Q ss_pred ---CCCCeEecCCCChHHHHHHHHHhccCCCCCCCCCchHHHHHHHHhcCCchhHH
Q 042541 309 ---QFGSVHYLKPLTYEAARTLFLHSANLQDGNSYIPDENIVSKILRACKGCPLAL 361 (695)
Q Consensus 309 ---~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai 361 (695)
.-...+++.+++.++....+.+.+..... .-..+....|++.++|.+.-+
T Consensus 174 tI~SRc~~~ef~~ls~~el~~~L~~i~~~egi---~ie~eAL~~Ia~~s~GslR~a 226 (507)
T PRK06645 174 TIISRCQRYDLRRLSFEEIFKLLEYITKQENL---KTDIEALRIIAYKSEGSARDA 226 (507)
T ss_pred HHHhcceEEEccCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHH
Confidence 12237899999999999999988754332 123567888999999987544
No 75
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.35 E-value=4e-08 Score=108.16 Aligned_cols=128 Identities=18% Similarity=0.233 Sum_probs=96.3
Q ss_pred CCceEEEEEEccCccccCChhhcCCCCCcEEEEcccCCCCcccCcccccccCCCCcEEEeccCCCCCcc-cccccccccE
Q 042541 549 GPEVKVVVLNIRTKKYVLPDFLQKMDELKVLIVTNYGFSPAELNNFRVLSALSKLKKIRLEHVSLPNSL-ATVRMNHLQK 627 (695)
Q Consensus 549 ~~~l~~L~l~~~~~~~~~p~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~lp-~i~~l~~L~~ 627 (695)
.+.|+.|++-+|......-+-+.++++||+|+|++|.+. .++. ..+.++..|+.|.|+||.++.+| ++.++..|++
T Consensus 358 ~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~--~fpa-s~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~t 434 (1081)
T KOG0618|consen 358 HAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLN--SFPA-SKLRKLEELEELNLSGNKLTTLPDTVANLGRLHT 434 (1081)
T ss_pred hHHHHHHHHhcCcccccchhhhccccceeeeeecccccc--cCCH-HHHhchHHhHHHhcccchhhhhhHHHHhhhhhHH
Confidence 445666666667666666667888999999999998542 1111 22678888999999999999999 9999999999
Q ss_pred EeeccccCCcccccchhhhcccCCCccEEeccccccccc--CchhhcCCCCCceeecccccC
Q 042541 628 VSLVMCNVGQVFRNSTFRISDAFPNLLEMDIDYCNDLIE--LPDGLCDIVSMEKLRITNCHR 687 (695)
Q Consensus 628 L~l~~~~i~~~~~~~~~~l~~~l~~L~~L~l~~c~~l~~--lP~~i~~L~~L~~L~l~~~~~ 687 (695)
|...+|.+...| ... .++.|+++|++. +++.. +|..... ++|++||++||..
T Consensus 435 L~ahsN~l~~fP-e~~-----~l~qL~~lDlS~-N~L~~~~l~~~~p~-p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 435 LRAHSNQLLSFP-ELA-----QLPQLKVLDLSC-NNLSEVTLPEALPS-PNLKYLDLSGNTR 488 (1081)
T ss_pred HhhcCCceeech-hhh-----hcCcceEEeccc-chhhhhhhhhhCCC-cccceeeccCCcc
Confidence 999999888877 444 799999999995 55654 3332222 7999999999874
No 76
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.32 E-value=4.4e-07 Score=68.72 Aligned_cols=59 Identities=19% Similarity=0.367 Sum_probs=52.9
Q ss_pred ccccEEeeccccCCcccccchhhhcccCCCccEEecccccccccCch-hhcCCCCCceeeccccc
Q 042541 623 NHLQKVSLVMCNVGQVFRNSTFRISDAFPNLLEMDIDYCNDLIELPD-GLCDIVSMEKLRITNCH 686 (695)
Q Consensus 623 ~~L~~L~l~~~~i~~~~~~~~~~l~~~l~~L~~L~l~~c~~l~~lP~-~i~~L~~L~~L~l~~~~ 686 (695)
++|++|++++|+++.+++..+. .+++|++|++++| .+..+|. .|..+++|++|++++|+
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~----~l~~L~~L~l~~N-~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFS----NLPNLETLDLSNN-NLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEECTTTTT----TGTTESEEEETSS-SESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCccCHHHHc----CCCCCCEeEccCC-ccCccCHHHHcCCCCCCEEeCcCCc
Confidence 4799999999999999998887 8999999999975 5677775 58999999999999986
No 77
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.32 E-value=2.1e-05 Score=86.66 Aligned_cols=167 Identities=18% Similarity=0.182 Sum_probs=104.7
Q ss_pred CCCCCCcchHHHHHHHHHcCCc-eEEEEEcCCCCcHHHHHHHHhccccccc-------------------cCCCcEEEEE
Q 042541 166 VISPGLDVPLKELKMELFKDGR-QFIVVSAPGGYGKTTLVQRLCKDDQVQG-------------------KFKDDIFYVT 225 (695)
Q Consensus 166 ~~~vGr~~~~~~l~~~L~~~~~-~vv~I~G~gGiGKTtLa~~~~~~~~~~~-------------------~f~~~~~wv~ 225 (695)
+.+||-+..++.+..++..+.. ..+.++|+.|+||||+|+.++..---.. .|.. +++++
T Consensus 16 ~divGq~~v~~~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d-~~ei~ 94 (527)
T PRK14969 16 SELVGQEHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVD-LIEVD 94 (527)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCc-eeEee
Confidence 4579999999999999887664 4568999999999999999876311000 1111 22222
Q ss_pred eCCCCCHHHHHHHHHHhcCCCCCCCCChHHHHHHHHHHHH-----hcCCCcEEEEEeCCCCCChH----HHhhhccCCCC
Q 042541 226 VSKNPNVKAIVQKVLHHKGYPVPEFQTDEAAINDLERFFK-----QMRIEAILLVLDDVWPGSES----LLQKLGFQLPD 296 (695)
Q Consensus 226 ~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~-----~l~~~~~LlVlDdv~~~~~~----~~~~l~~~~~g 296 (695)
.+.... .+.++++++ -..+++-++|+|+++..... +++.+......
T Consensus 95 ~~~~~~-------------------------vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~ 149 (527)
T PRK14969 95 AASNTQ-------------------------VDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEH 149 (527)
T ss_pred ccccCC-------------------------HHHHHHHHHHHhhCcccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCC
Confidence 111111 122222221 12466779999999877643 45555554456
Q ss_pred CEEEEEcCCCCCCC------CCeEecCCCChHHHHHHHHHhccCCCCCCCCCchHHHHHHHHhcCCchhHH
Q 042541 297 YKILVTSRSEFPQF------GSVHYLKPLTYEAARTLFLHSANLQDGNSYIPDENIVSKILRACKGCPLAL 361 (695)
Q Consensus 297 s~iivTtR~~~~~~------~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai 361 (695)
+.+|++|.+..... ...+++++++.++....+.+.+...+. ...++.+..|++.++|.+.-+
T Consensus 150 ~~fIL~t~d~~kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~~egi---~~~~~al~~la~~s~Gslr~a 217 (527)
T PRK14969 150 VKFILATTDPQKIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQENI---PFDATALQLLARAAAGSMRDA 217 (527)
T ss_pred EEEEEEeCChhhCchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHH
Confidence 77776665442111 227899999999999888776643322 123566788999999987533
No 78
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.32 E-value=1.7e-05 Score=87.97 Aligned_cols=193 Identities=13% Similarity=0.138 Sum_probs=107.3
Q ss_pred CCCCCCCcchHHHHHHHHHcCCc-eEEEEEcCCCCcHHHHHHHHhccccccccCC-CcEEEEEeCCCCCHHHHHHHHHHh
Q 042541 165 PVISPGLDVPLKELKMELFKDGR-QFIVVSAPGGYGKTTLVQRLCKDDQVQGKFK-DDIFYVTVSKNPNVKAIVQKVLHH 242 (695)
Q Consensus 165 ~~~~vGr~~~~~~l~~~L~~~~~-~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~-~~~~wv~~~~~~~~~~~~~~i~~~ 242 (695)
-+.+||-+..++.|..++..+.. ..+.++|+.|+||||+|+.+.+.---..... .+.-.-.++.+ ...+.|...
T Consensus 15 f~dviGQe~vv~~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg~C----~~C~~i~~g 90 (618)
T PRK14951 15 FSEMVGQEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCGVC----QACRDIDSG 90 (618)
T ss_pred HHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCCcc----HHHHHHHcC
Confidence 34679988888889898887664 5678999999999999999865211000000 00000001111 111111000
Q ss_pred cCCCCCCCC-ChHHHHHHHHHHHHh-----cCCCcEEEEEeCCCCCChH----HHhhhccCCCCCEEEEEcCCCC-----
Q 042541 243 KGYPVPEFQ-TDEAAINDLERFFKQ-----MRIEAILLVLDDVWPGSES----LLQKLGFQLPDYKILVTSRSEF----- 307 (695)
Q Consensus 243 l~~~~~~~~-~~~~~~~~l~~~~~~-----l~~~~~LlVlDdv~~~~~~----~~~~l~~~~~gs~iivTtR~~~----- 307 (695)
-........ ......+.++++++. ..++.-++|+|+++..... ++..+......+++|++|.+..
T Consensus 91 ~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd~~kil~T 170 (618)
T PRK14951 91 RFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQKVPVT 170 (618)
T ss_pred CCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECCchhhhHH
Confidence 000000000 000112223333322 2355679999999887654 3444444444567776665431
Q ss_pred -CCCCCeEecCCCChHHHHHHHHHhccCCCCCCCCCchHHHHHHHHhcCCchhHHHHH
Q 042541 308 -PQFGSVHYLKPLTYEAARTLFLHSANLQDGNSYIPDENIVSKILRACKGCPLALKVV 364 (695)
Q Consensus 308 -~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~ 364 (695)
..-+..+++++++.++....+.+.+...+. .-..+....|++.++|.+.-+..+
T Consensus 171 IlSRc~~~~f~~Ls~eei~~~L~~i~~~egi---~ie~~AL~~La~~s~GslR~al~l 225 (618)
T PRK14951 171 VLSRCLQFNLRPMAPETVLEHLTQVLAAENV---PAEPQALRLLARAARGSMRDALSL 225 (618)
T ss_pred HHHhceeeecCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 112348999999999999999877644332 123567899999999987554443
No 79
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.30 E-value=1.6e-06 Score=85.50 Aligned_cols=95 Identities=16% Similarity=0.099 Sum_probs=61.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCCC--CCHHHHHHHHHHhcCCCCCCCCChH--HHHHHH
Q 042541 185 DGRQFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSKN--PNVKAIVQKVLHHKGYPVPEFQTDE--AAINDL 260 (695)
Q Consensus 185 ~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~~--~~~~~~~~~i~~~l~~~~~~~~~~~--~~~~~l 260 (695)
.....++|+|++|+|||||++.++++.... +|+. +.|+.+.+. .++.++++.+...+-....+.+... .....+
T Consensus 14 ~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~-~fdv-~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~ 91 (249)
T cd01128 14 GKGQRGLIVAPPKAGKTTLLQSIANAITKN-HPEV-YLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMV 91 (249)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhccccc-cCCe-EEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHH
Confidence 345789999999999999999999964333 7887 669997766 7899999999443322211111111 111111
Q ss_pred HHHHHh--cCCCcEEEEEeCCCC
Q 042541 261 ERFFKQ--MRIEAILLVLDDVWP 281 (695)
Q Consensus 261 ~~~~~~--l~~~~~LlVlDdv~~ 281 (695)
....+. -.+++.++++|++..
T Consensus 92 ~~~a~~~~~~G~~vll~iDei~r 114 (249)
T cd01128 92 LEKAKRLVEHGKDVVILLDSITR 114 (249)
T ss_pred HHHHHHHHHCCCCEEEEEECHHH
Confidence 122211 258999999999854
No 80
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.29 E-value=2.5e-05 Score=77.12 Aligned_cols=166 Identities=17% Similarity=0.207 Sum_probs=98.8
Q ss_pred CCCCCCCcc-hHHHHHHHHHcCCceEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCCCCCHHHHHHHHHHhc
Q 042541 165 PVISPGLDV-PLKELKMELFKDGRQFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSKNPNVKAIVQKVLHHK 243 (695)
Q Consensus 165 ~~~~vGr~~-~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~~~~~~~~~~~i~~~l 243 (695)
.++++|-.. .+..+..+......+.+.|+|+.|+|||+|++.+++. .... ...+.++++.....
T Consensus 22 d~f~~~~n~~a~~~l~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~--~~~~-~~~v~y~~~~~~~~------------ 86 (235)
T PRK08084 22 ASFYPGDNDSLLAALQNALRQEHSGYIYLWSREGAGRSHLLHAACAE--LSQR-GRAVGYVPLDKRAW------------ 86 (235)
T ss_pred cccccCccHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHH--HHhC-CCeEEEEEHHHHhh------------
Confidence 345567333 3344444444455578999999999999999999883 3322 22366777643100
Q ss_pred CCCCCCCCChHHHHHHHHHHHHhcCCCcEEEEEeCCCCCC---hH---HHhhhccC-CCC-CEEEEEcCCCCC-------
Q 042541 244 GYPVPEFQTDEAAINDLERFFKQMRIEAILLVLDDVWPGS---ES---LLQKLGFQ-LPD-YKILVTSRSEFP------- 308 (695)
Q Consensus 244 ~~~~~~~~~~~~~~~~l~~~~~~l~~~~~LlVlDdv~~~~---~~---~~~~l~~~-~~g-s~iivTtR~~~~------- 308 (695)
. ...+. +.+.. --+|++||+.... .+ +...+... ..| .++|+||+....
T Consensus 87 --------~----~~~~~---~~~~~-~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~ 150 (235)
T PRK08084 87 --------F----VPEVL---EGMEQ-LSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLP 150 (235)
T ss_pred --------h----hHHHH---HHhhh-CCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccH
Confidence 0 00111 11111 2478999995432 11 12222221 133 479999986621
Q ss_pred ------CCCCeEecCCCChHHHHHHHHHhccCCCCCCCCCchHHHHHHHHhcCCchhHHHHH
Q 042541 309 ------QFGSVHYLKPLTYEAARTLFLHSANLQDGNSYIPDENIVSKILRACKGCPLALKVV 364 (695)
Q Consensus 309 ------~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~ 364 (695)
..+.++++++++.++-.+++.+++....- .-.+++..-|++.+.|..-.+..+
T Consensus 151 ~L~SRl~~g~~~~l~~~~~~~~~~~l~~~a~~~~~---~l~~~v~~~L~~~~~~d~r~l~~~ 209 (235)
T PRK08084 151 DLASRLDWGQIYKLQPLSDEEKLQALQLRARLRGF---ELPEDVGRFLLKRLDREMRTLFMT 209 (235)
T ss_pred HHHHHHhCCceeeecCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHhhcCCHHHHHHH
Confidence 22358999999999999999876643321 224788899999999876555444
No 81
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.29 E-value=1.1e-06 Score=100.01 Aligned_cols=144 Identities=17% Similarity=0.197 Sum_probs=91.5
Q ss_pred ccceEEeeecCCcccCCCCCCCCCceEEEEEEccCccccCChhhcCCCCCcEEEEcccCCCCcccCcccccccCCCCcEE
Q 042541 527 NNASLLSISTDETFSSNWPDMQGPEVKVVVLNIRTKKYVLPDFLQKMDELKVLIVTNYGFSPAELNNFRVLSALSKLKKI 606 (695)
Q Consensus 527 ~~~r~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~p~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L 606 (695)
...+.|.+.++... ..+. ..+++|+.|.++.|... .+|..+. .+|+.|++++|.+. .++. .+ ..+|++|
T Consensus 199 ~~L~~L~Ls~N~Lt-sLP~-~l~~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~--~LP~--~l--~s~L~~L 267 (754)
T PRK15370 199 EQITTLILDNNELK-SLPE-NLQGNIKTLYANSNQLT-SIPATLP--DTIQEMELSINRIT--ELPE--RL--PSALQSL 267 (754)
T ss_pred cCCcEEEecCCCCC-cCCh-hhccCCCEEECCCCccc-cCChhhh--ccccEEECcCCccC--cCCh--hH--hCCCCEE
Confidence 35666666555332 2222 22357777777766433 4565443 36778888777653 2211 12 2468888
Q ss_pred EeccCCCCCcc-cccccccccEEeeccccCCcccccchhhhcccCCCccEEecccccccccCchhhcCCCCCceeecccc
Q 042541 607 RLEHVSLPNSL-ATVRMNHLQKVSLVMCNVGQVFRNSTFRISDAFPNLLEMDIDYCNDLIELPDGLCDIVSMEKLRITNC 685 (695)
Q Consensus 607 ~L~~~~l~~lp-~i~~l~~L~~L~l~~~~i~~~~~~~~~~l~~~l~~L~~L~l~~c~~l~~lP~~i~~L~~L~~L~l~~~ 685 (695)
++++|++..+| .+. .+|++|++++|.++.+|+.. .++|+.|++++| .+..+|..+. ++|+.|++++|
T Consensus 268 ~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~Lt~LP~~l-------p~sL~~L~Ls~N-~Lt~LP~~l~--~sL~~L~Ls~N 335 (754)
T PRK15370 268 DLFHNKISCLPENLP--EELRYLSVYDNSIRTLPAHL-------PSGITHLNVQSN-SLTALPETLP--PGLKTLEAGEN 335 (754)
T ss_pred ECcCCccCccccccC--CCCcEEECCCCccccCcccc-------hhhHHHHHhcCC-ccccCCcccc--ccceeccccCC
Confidence 88888888777 553 47888888888887766432 246778888875 5667776543 68999999987
Q ss_pred cCCCCCCCC
Q 042541 686 HRLSALPEG 694 (695)
Q Consensus 686 ~~l~~lP~~ 694 (695)
. +..+|..
T Consensus 336 ~-Lt~LP~~ 343 (754)
T PRK15370 336 A-LTSLPAS 343 (754)
T ss_pred c-cccCChh
Confidence 6 7778754
No 82
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.29 E-value=3.8e-07 Score=95.13 Aligned_cols=161 Identities=13% Similarity=0.050 Sum_probs=99.6
Q ss_pred CccceEEeeecCCcccCCCCC-CCC---CceEEEEEEccCcc----ccCChhhcCC-CCCcEEEEcccCCCCcccCc-cc
Q 042541 526 PNNASLLSISTDETFSSNWPD-MQG---PEVKVVVLNIRTKK----YVLPDFLQKM-DELKVLIVTNYGFSPAELNN-FR 595 (695)
Q Consensus 526 ~~~~r~l~~~~~~~~~~~~~~-~~~---~~l~~L~l~~~~~~----~~~p~~~~~l-~~Lr~L~l~~~~~~~~~~~~-~~ 595 (695)
....+++.+.+.......... ..+ ++|+.|.++.+... ..+...+..+ ++|+.|++++|.+....... ..
T Consensus 80 ~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~ 159 (319)
T cd00116 80 GCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAK 159 (319)
T ss_pred cCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHH
Confidence 446777777654332111000 012 45899999887543 2334456677 88999999998775332211 12
Q ss_pred ccccCCCCcEEEeccCCCC-----Ccc-cccccccccEEeeccccCCcccccchhhhcccCCCccEEecccccccccCch
Q 042541 596 VLSALSKLKKIRLEHVSLP-----NSL-ATVRMNHLQKVSLVMCNVGQVFRNSTFRISDAFPNLLEMDIDYCNDLIELPD 669 (695)
Q Consensus 596 ~l~~l~~L~~L~L~~~~l~-----~lp-~i~~l~~L~~L~l~~~~i~~~~~~~~~~l~~~l~~L~~L~l~~c~~l~~lP~ 669 (695)
.+..+.+|++|++++|.+. .++ .+..+++|++|++++|.++......+......+++|++|++++|..-..-+.
T Consensus 160 ~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~ 239 (319)
T cd00116 160 ALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAA 239 (319)
T ss_pred HHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHH
Confidence 3566778999999999887 234 4556679999999999876443222111111678899999998753221111
Q ss_pred hhc-----CCCCCceeeccccc
Q 042541 670 GLC-----DIVSMEKLRITNCH 686 (695)
Q Consensus 670 ~i~-----~L~~L~~L~l~~~~ 686 (695)
.+. ..++|++|++++|.
T Consensus 240 ~l~~~~~~~~~~L~~L~l~~n~ 261 (319)
T cd00116 240 ALASALLSPNISLLTLSLSCND 261 (319)
T ss_pred HHHHHHhccCCCceEEEccCCC
Confidence 221 24799999999976
No 83
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.28 E-value=1.7e-06 Score=98.01 Aligned_cols=33 Identities=15% Similarity=0.028 Sum_probs=16.9
Q ss_pred ceEEEEEEccCccccCChhhcCCCCCcEEEEcccCCC
Q 042541 551 EVKVVVLNIRTKKYVLPDFLQKMDELKVLIVTNYGFS 587 (695)
Q Consensus 551 ~l~~L~l~~~~~~~~~p~~~~~l~~Lr~L~l~~~~~~ 587 (695)
+|+.|.++.|.. ..+|. .+++|+.|++++|.+.
T Consensus 283 ~L~~L~Ls~N~L-t~LP~---~p~~L~~LdLS~N~L~ 315 (788)
T PRK15387 283 GLCKLWIFGNQL-TSLPV---LPPGLQELSVSDNQLA 315 (788)
T ss_pred hcCEEECcCCcc-ccccc---cccccceeECCCCccc
Confidence 344455544422 22333 1356777777777553
No 84
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.28 E-value=1.7e-05 Score=86.81 Aligned_cols=191 Identities=14% Similarity=0.120 Sum_probs=105.4
Q ss_pred CCCCCCCcchHHHHHHHHHcCC-ceEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCCCCCHHHHHHHHHHhc
Q 042541 165 PVISPGLDVPLKELKMELFKDG-RQFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSKNPNVKAIVQKVLHHK 243 (695)
Q Consensus 165 ~~~~vGr~~~~~~l~~~L~~~~-~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~~~~~~~~~~~i~~~l 243 (695)
-..++|.+..++.+...+..+. ...+.++|+.|+||||+|+.+++. +... -|.... .++.-...+.+....
T Consensus 15 F~dIIGQe~iv~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~--L~C~-----~~~~~~-~Cg~C~sCr~i~~~~ 86 (605)
T PRK05896 15 FKQIIGQELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKA--INCL-----NPKDGD-CCNSCSVCESINTNQ 86 (605)
T ss_pred HHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHH--hcCC-----CCCCCC-CCcccHHHHHHHcCC
Confidence 3567999999999999887655 456889999999999999998873 2110 011110 001111111111110
Q ss_pred CCCC---C-CCCChHHHHHHHHHHHHh--cCCCcEEEEEeCCCCCChH----HHhhhccCCCCCEEEEEcCCCCC-----
Q 042541 244 GYPV---P-EFQTDEAAINDLERFFKQ--MRIEAILLVLDDVWPGSES----LLQKLGFQLPDYKILVTSRSEFP----- 308 (695)
Q Consensus 244 ~~~~---~-~~~~~~~~~~~l~~~~~~--l~~~~~LlVlDdv~~~~~~----~~~~l~~~~~gs~iivTtR~~~~----- 308 (695)
.... . .....-+.+..+...... ..+++-++|+|+++..... ++..+....+.+.+|++|.....
T Consensus 87 h~DiieIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~KLl~TI 166 (605)
T PRK05896 87 SVDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQKIPLTI 166 (605)
T ss_pred CCceEEeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChHhhhHHH
Confidence 0000 0 000011111222221111 1244557999999776533 33444434445666665543311
Q ss_pred -CCCCeEecCCCChHHHHHHHHHhccCCCCCCCCCchHHHHHHHHhcCCchh-HHHHHHH
Q 042541 309 -QFGSVHYLKPLTYEAARTLFLHSANLQDGNSYIPDENIVSKILRACKGCPL-ALKVVGG 366 (695)
Q Consensus 309 -~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PL-ai~~~~~ 366 (695)
.-+..+++.+++.++....+...+...+.. -..+.+..+++.++|.+. |+..+-.
T Consensus 167 ~SRcq~ieF~~Ls~~eL~~~L~~il~kegi~---Is~eal~~La~lS~GdlR~AlnlLek 223 (605)
T PRK05896 167 ISRCQRYNFKKLNNSELQELLKSIAKKEKIK---IEDNAIDKIADLADGSLRDGLSILDQ 223 (605)
T ss_pred HhhhhhcccCCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 113378999999999998888766433221 135678899999999664 4444433
No 85
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.28 E-value=4.1e-05 Score=81.17 Aligned_cols=175 Identities=16% Similarity=0.157 Sum_probs=105.7
Q ss_pred CCCCCCCcchHHHHHHHHHcCC-ceEEEEEcCCCCcHHHHHHHHhcccccc--c------------------cCCCcEEE
Q 042541 165 PVISPGLDVPLKELKMELFKDG-RQFIVVSAPGGYGKTTLVQRLCKDDQVQ--G------------------KFKDDIFY 223 (695)
Q Consensus 165 ~~~~vGr~~~~~~l~~~L~~~~-~~vv~I~G~gGiGKTtLa~~~~~~~~~~--~------------------~f~~~~~w 223 (695)
-..++|.+..++.+.+++..+. ...+.++|+.|+||||+|+.+...-.-. . +++ +.+
T Consensus 13 ~~~iig~~~~~~~l~~~~~~~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~--~~~ 90 (355)
T TIGR02397 13 FEDVIGQEHIVQTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLD--VIE 90 (355)
T ss_pred HhhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCC--EEE
Confidence 3457999999999999998665 4567899999999999998887631100 0 111 222
Q ss_pred EEeCCCCCHHHHHHHHHHhcCCCCCCCCChHHHHHHHHHHHHhcCCCcEEEEEeCCCCCChH----HHhhhccCCCCCEE
Q 042541 224 VTVSKNPNVKAIVQKVLHHKGYPVPEFQTDEAAINDLERFFKQMRIEAILLVLDDVWPGSES----LLQKLGFQLPDYKI 299 (695)
Q Consensus 224 v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~~~LlVlDdv~~~~~~----~~~~l~~~~~gs~i 299 (695)
++-+....... .++++..+.. ....+++-++|+|++...... ++..+....+.+.+
T Consensus 91 ~~~~~~~~~~~-~~~l~~~~~~-------------------~p~~~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~l 150 (355)
T TIGR02397 91 IDAASNNGVDD-IREILDNVKY-------------------APSSGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVVF 150 (355)
T ss_pred eeccccCCHHH-HHHHHHHHhc-------------------CcccCCceEEEEeChhhcCHHHHHHHHHHHhCCccceeE
Confidence 22211111111 1111111110 112355668999998765432 44445444455677
Q ss_pred EEEcCCCC------CCCCCeEecCCCChHHHHHHHHHhccCCCCCCCCCchHHHHHHHHhcCCchhHHHHH
Q 042541 300 LVTSRSEF------PQFGSVHYLKPLTYEAARTLFLHSANLQDGNSYIPDENIVSKILRACKGCPLALKVV 364 (695)
Q Consensus 300 ivTtR~~~------~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~ 364 (695)
|++|.+.. ......+++.++++++....+...+...+. .-.++.+..+++.++|.|..+...
T Consensus 151 Il~~~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~---~i~~~a~~~l~~~~~g~~~~a~~~ 218 (355)
T TIGR02397 151 ILATTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGI---KIEDEALELIARAADGSLRDALSL 218 (355)
T ss_pred EEEeCCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCChHHHHHH
Confidence 77764431 112347888999999999988876643322 113577889999999988765544
No 86
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.27 E-value=4.7e-07 Score=104.67 Aligned_cols=129 Identities=16% Similarity=0.175 Sum_probs=97.7
Q ss_pred CCCceEEEEEEccCccccCChhhcCCCCCcEEEEcccCCCCcccCcccccccCCCCcEEEeccCC-CCCcc-cccccccc
Q 042541 548 QGPEVKVVVLNIRTKKYVLPDFLQKMDELKVLIVTNYGFSPAELNNFRVLSALSKLKKIRLEHVS-LPNSL-ATVRMNHL 625 (695)
Q Consensus 548 ~~~~l~~L~l~~~~~~~~~p~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~-l~~lp-~i~~l~~L 625 (695)
.....+...+..+.. ..++... ..++|++|-+..|......+ ....+..++.|++|||++|. +..+| +|++|-||
T Consensus 521 ~~~~~rr~s~~~~~~-~~~~~~~-~~~~L~tLll~~n~~~l~~i-s~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~L 597 (889)
T KOG4658|consen 521 SWNSVRRMSLMNNKI-EHIAGSS-ENPKLRTLLLQRNSDWLLEI-SGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHL 597 (889)
T ss_pred chhheeEEEEeccch-hhccCCC-CCCccceEEEeecchhhhhc-CHHHHhhCcceEEEECCCCCccCcCChHHhhhhhh
Confidence 445566666655422 2223222 33479999998875210111 11227789999999999875 56999 99999999
Q ss_pred cEEeeccccCCcccccchhhhcccCCCccEEecccccccccCchhhcCCCCCceeeccc
Q 042541 626 QKVSLVMCNVGQVFRNSTFRISDAFPNLLEMDIDYCNDLIELPDGLCDIVSMEKLRITN 684 (695)
Q Consensus 626 ~~L~l~~~~i~~~~~~~~~~l~~~l~~L~~L~l~~c~~l~~lP~~i~~L~~L~~L~l~~ 684 (695)
|||+++++.+..+|.++. +|.+|.+|++.++..+..+|..+..|++|++|.+..
T Consensus 598 ryL~L~~t~I~~LP~~l~-----~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~ 651 (889)
T KOG4658|consen 598 RYLDLSDTGISHLPSGLG-----NLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPR 651 (889)
T ss_pred hcccccCCCccccchHHH-----HHHhhheeccccccccccccchhhhcccccEEEeec
Confidence 999999999999998887 899999999999888888877777799999999976
No 87
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.25 E-value=5.3e-05 Score=80.51 Aligned_cols=173 Identities=14% Similarity=0.149 Sum_probs=101.9
Q ss_pred CCCCCCcchHHHHHHHHHcCC-ceEEEEEcCCCCcHHHHHHHHhccccc------cccCCCcEEEEEeCCCCCHHHHHHH
Q 042541 166 VISPGLDVPLKELKMELFKDG-RQFIVVSAPGGYGKTTLVQRLCKDDQV------QGKFKDDIFYVTVSKNPNVKAIVQK 238 (695)
Q Consensus 166 ~~~vGr~~~~~~l~~~L~~~~-~~vv~I~G~gGiGKTtLa~~~~~~~~~------~~~f~~~~~wv~~~~~~~~~~~~~~ 238 (695)
+.++|.+..++.+...+..+. .+.+.++|+.|+||||+|+.+.+.-.- ...|...++-++.....+..+ ..+
T Consensus 17 ~~iig~~~~~~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-i~~ 95 (367)
T PRK14970 17 DDVVGQSHITNTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDAASNNSVDD-IRN 95 (367)
T ss_pred HhcCCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEeccccCCCHHH-HHH
Confidence 456999999999999998665 458889999999999999998773111 012222122221111111111 112
Q ss_pred HHHhcCCCCCCCCChHHHHHHHHHHHHhcCCCcEEEEEeCCCCCChH----HHhhhccCCCCCEEEEEcCCCC--C----
Q 042541 239 VLHHKGYPVPEFQTDEAAINDLERFFKQMRIEAILLVLDDVWPGSES----LLQKLGFQLPDYKILVTSRSEF--P---- 308 (695)
Q Consensus 239 i~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~~~LlVlDdv~~~~~~----~~~~l~~~~~gs~iivTtR~~~--~---- 308 (695)
+++.+.. ....+++-++++|++...... ++..+....+.+.+|++|.... .
T Consensus 96 l~~~~~~-------------------~p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~~~l~ 156 (367)
T PRK14970 96 LIDQVRI-------------------PPQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIPTIL 156 (367)
T ss_pred HHHHHhh-------------------ccccCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCCHHHH
Confidence 2221110 011245668999998765543 2232333333456666554331 1
Q ss_pred CCCCeEecCCCChHHHHHHHHHhccCCCCCCCCCchHHHHHHHHhcCCchhHH
Q 042541 309 QFGSVHYLKPLTYEAARTLFLHSANLQDGNSYIPDENIVSKILRACKGCPLAL 361 (695)
Q Consensus 309 ~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai 361 (695)
..+..++.++++.++....+...+...+.. -..+.+..|++.++|.+-.+
T Consensus 157 sr~~~v~~~~~~~~~l~~~l~~~~~~~g~~---i~~~al~~l~~~~~gdlr~~ 206 (367)
T PRK14970 157 SRCQIFDFKRITIKDIKEHLAGIAVKEGIK---FEDDALHIIAQKADGALRDA 206 (367)
T ss_pred hcceeEecCCccHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHhCCCCHHHH
Confidence 123378999999999998888766443321 13678899999999966533
No 88
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.24 E-value=1.1e-07 Score=104.67 Aligned_cols=106 Identities=19% Similarity=0.270 Sum_probs=88.8
Q ss_pred CCCCcEEEEcccCCCCcccCcccccccCCCCcEEEeccCCCCCcc--cccccccccEEeeccccCCcccccchhhhcccC
Q 042541 573 MDELKVLIVTNYGFSPAELNNFRVLSALSKLKKIRLEHVSLPNSL--ATVRMNHLQKVSLVMCNVGQVFRNSTFRISDAF 650 (695)
Q Consensus 573 l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~lp--~i~~l~~L~~L~l~~~~i~~~~~~~~~~l~~~l 650 (695)
++.|..|.+.+|.+.... ++.+.+..+||.|+|++|.+..+| .+.+|..|+.|+|+||.++.+|..+. .+
T Consensus 358 ~~~Lq~LylanN~Ltd~c---~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva-----~~ 429 (1081)
T KOG0618|consen 358 HAALQELYLANNHLTDSC---FPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLPDTVA-----NL 429 (1081)
T ss_pred hHHHHHHHHhcCcccccc---hhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhhHHHH-----hh
Confidence 445666777777664433 344778999999999999999999 88899999999999999999986665 89
Q ss_pred CCccEEecccccccccCchhhcCCCCCceeecccccCCC
Q 042541 651 PNLLEMDIDYCNDLIELPDGLCDIVSMEKLRITNCHRLS 689 (695)
Q Consensus 651 ~~L~~L~l~~c~~l~~lP~~i~~L~~L~~L~l~~~~~l~ 689 (695)
..|++|...+ +.+..+| .+.+++.|+++|++.|+ |.
T Consensus 430 ~~L~tL~ahs-N~l~~fP-e~~~l~qL~~lDlS~N~-L~ 465 (1081)
T KOG0618|consen 430 GRLHTLRAHS-NQLLSFP-ELAQLPQLKVLDLSCNN-LS 465 (1081)
T ss_pred hhhHHHhhcC-Cceeech-hhhhcCcceEEecccch-hh
Confidence 9999999987 4688999 69999999999999765 54
No 89
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.24 E-value=2.9e-05 Score=76.47 Aligned_cols=164 Identities=19% Similarity=0.164 Sum_probs=94.6
Q ss_pred CCCCCcchH-HHHHHHHH-cCCceEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCCCCCHHHHHHHHHHhcC
Q 042541 167 ISPGLDVPL-KELKMELF-KDGRQFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSKNPNVKAIVQKVLHHKG 244 (695)
Q Consensus 167 ~~vGr~~~~-~~l~~~L~-~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~~~~~~~~~~~i~~~l~ 244 (695)
++.|..... ..+.++.. ....+.+.|+|..|+|||+||+.+++.. ..... .+.+++...... . +
T Consensus 20 f~~~~~~~~~~~l~~~~~~~~~~~~~~l~G~~G~GKT~La~ai~~~~-~~~~~--~~~~i~~~~~~~------~----~- 85 (227)
T PRK08903 20 FVAGENAELVARLRELAAGPVADRFFYLWGEAGSGRSHLLQALVADA-SYGGR--NARYLDAASPLL------A----F- 85 (227)
T ss_pred cccCCcHHHHHHHHHHHhccCCCCeEEEECCCCCCHHHHHHHHHHHH-HhCCC--cEEEEehHHhHH------H----H-
Confidence 334655443 33333333 2335678999999999999999998832 12222 244665543210 0 0
Q ss_pred CCCCCCCChHHHHHHHHHHHHhcCCCcEEEEEeCCCCCChH----HHhhhccC-CCCC-EEEEEcCCCCC----------
Q 042541 245 YPVPEFQTDEAAINDLERFFKQMRIEAILLVLDDVWPGSES----LLQKLGFQ-LPDY-KILVTSRSEFP---------- 308 (695)
Q Consensus 245 ~~~~~~~~~~~~~~~l~~~~~~l~~~~~LlVlDdv~~~~~~----~~~~l~~~-~~gs-~iivTtR~~~~---------- 308 (695)
.. ....-+||+||+.....+ +...+... ..+. .+|+|++....
T Consensus 86 --------------------~~-~~~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~s 144 (227)
T PRK08903 86 --------------------DF-DPEAELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRT 144 (227)
T ss_pred --------------------hh-cccCCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHH
Confidence 01 123447899999654432 12222111 1233 46677664311
Q ss_pred C--CCCeEecCCCChHHHHHHHHHhccCCCCCCCCCchHHHHHHHHhcCCchhHHHHHHHhh
Q 042541 309 Q--FGSVHYLKPLTYEAARTLFLHSANLQDGNSYIPDENIVSKILRACKGCPLALKVVGGSL 368 (695)
Q Consensus 309 ~--~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~~~~L 368 (695)
. .+..++++++++++-..++.+.+..... .-.++....+++.+.|.+..+..+...+
T Consensus 145 r~~~~~~i~l~pl~~~~~~~~l~~~~~~~~v---~l~~~al~~L~~~~~gn~~~l~~~l~~l 203 (227)
T PRK08903 145 RLGWGLVYELKPLSDADKIAALKAAAAERGL---QLADEVPDYLLTHFRRDMPSLMALLDAL 203 (227)
T ss_pred HHhcCeEEEecCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 1 1348899999998877777664422211 1246788899999999998887765543
No 90
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.23 E-value=1.9e-05 Score=84.43 Aligned_cols=191 Identities=14% Similarity=0.107 Sum_probs=105.8
Q ss_pred CCCCCCCcchHHHHHHHHHcCCce-EEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEE-----EeCCCCCHHHHHHH
Q 042541 165 PVISPGLDVPLKELKMELFKDGRQ-FIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYV-----TVSKNPNVKAIVQK 238 (695)
Q Consensus 165 ~~~~vGr~~~~~~l~~~L~~~~~~-vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv-----~~~~~~~~~~~~~~ 238 (695)
-+.++|-+..++.|..++.++..+ .+.++|+.|+||||+|+.+++.-.-...+.. .-|. .++.+. ..+.
T Consensus 15 ~~eiiGq~~~~~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~-~~~~~~~~~~c~~c~----~c~~ 89 (397)
T PRK14955 15 FADITAQEHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDD-ADYLQEVTEPCGECE----SCRD 89 (397)
T ss_pred HhhccChHHHHHHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCc-ccccccCCCCCCCCH----HHHH
Confidence 456799998889998888876654 4889999999999999998873111111100 0010 111111 1111
Q ss_pred HHHhcCCCCCCCCC-hHHHHHHHHHHHHhc-----CCCcEEEEEeCCCCCChH----HHhhhccCCCCCEEEEEcCCCC-
Q 042541 239 VLHHKGYPVPEFQT-DEAAINDLERFFKQM-----RIEAILLVLDDVWPGSES----LLQKLGFQLPDYKILVTSRSEF- 307 (695)
Q Consensus 239 i~~~l~~~~~~~~~-~~~~~~~l~~~~~~l-----~~~~~LlVlDdv~~~~~~----~~~~l~~~~~gs~iivTtR~~~- 307 (695)
+............. .....+.++.+.+.+ .+.+-++|+|++...... ++..+....+.+.+|++|....
T Consensus 90 ~~~~~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~~~k 169 (397)
T PRK14955 90 FDAGTSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELHK 169 (397)
T ss_pred HhcCCCCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCChHH
Confidence 11100000000000 000122233222222 356678999999766532 4445554555677766653321
Q ss_pred CC-----CCCeEecCCCChHHHHHHHHHhccCCCCCCCCCchHHHHHHHHhcCCchhHHHH
Q 042541 308 PQ-----FGSVHYLKPLTYEAARTLFLHSANLQDGNSYIPDENIVSKILRACKGCPLALKV 363 (695)
Q Consensus 308 ~~-----~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~ 363 (695)
.. .+..+++.+++.++....+...+..... .-..+.+..|++.++|.+--+..
T Consensus 170 l~~tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~g~---~i~~~al~~l~~~s~g~lr~a~~ 227 (397)
T PRK14955 170 IPATIASRCQRFNFKRIPLEEIQQQLQGICEAEGI---SVDADALQLIGRKAQGSMRDAQS 227 (397)
T ss_pred hHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHHH
Confidence 11 1237889999999998888876543221 12467899999999998754433
No 91
>PRK05642 DNA replication initiation factor; Validated
Probab=98.19 E-value=5.1e-05 Score=74.83 Aligned_cols=145 Identities=14% Similarity=0.179 Sum_probs=89.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCCCCCHHHHHHHHHHhcCCCCCCCCChHHHHHHHHHHHHhc
Q 042541 188 QFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSKNPNVKAIVQKVLHHKGYPVPEFQTDEAAINDLERFFKQM 267 (695)
Q Consensus 188 ~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~~l 267 (695)
..+.|+|..|+|||.|++.+++ ..... ...++|++..+ +... .. ...+.+
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~--~~~~~-~~~v~y~~~~~------~~~~------------------~~---~~~~~~ 95 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACL--RFEQR-GEPAVYLPLAE------LLDR------------------GP---ELLDNL 95 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHH--HHHhC-CCcEEEeeHHH------HHhh------------------hH---HHHHhh
Confidence 6789999999999999999987 33322 23366777543 1110 01 111222
Q ss_pred CCCcEEEEEeCCCCCC---hH---HHhhhcc-CCCCCEEEEEcCCCCC-------------CCCCeEecCCCChHHHHHH
Q 042541 268 RIEAILLVLDDVWPGS---ES---LLQKLGF-QLPDYKILVTSRSEFP-------------QFGSVHYLKPLTYEAARTL 327 (695)
Q Consensus 268 ~~~~~LlVlDdv~~~~---~~---~~~~l~~-~~~gs~iivTtR~~~~-------------~~~~~~~l~~L~~~ea~~L 327 (695)
.+-. +||+||+.... .+ +..-+.. ...|..+|+|++.... ..+..+++++++.++-.++
T Consensus 96 ~~~d-~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~i 174 (234)
T PRK05642 96 EQYE-LVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRA 174 (234)
T ss_pred hhCC-EEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHH
Confidence 2222 68899996331 21 2222221 2346789999887521 1134789999999999999
Q ss_pred HHHhccCCCCCCCCCchHHHHHHHHhcCCchhHHHHHHH
Q 042541 328 FLHSANLQDGNSYIPDENIVSKILRACKGCPLALKVVGG 366 (695)
Q Consensus 328 f~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~~~ 366 (695)
+..++....- .-.+++..-|++.+.|-.-.+..+-.
T Consensus 175 l~~ka~~~~~---~l~~ev~~~L~~~~~~d~r~l~~~l~ 210 (234)
T PRK05642 175 LQLRASRRGL---HLTDEVGHFILTRGTRSMSALFDLLE 210 (234)
T ss_pred HHHHHHHcCC---CCCHHHHHHHHHhcCCCHHHHHHHHH
Confidence 9866543321 12367888999999987665554433
No 92
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.18 E-value=3.5e-05 Score=86.56 Aligned_cols=200 Identities=17% Similarity=0.162 Sum_probs=104.4
Q ss_pred CCCCCCCcchHHHHHHHHHcCCceEEEEEcCCCCcHHHHHHHHhccccccccC--CCcEEEEEeCCC---CCHHHHHHHH
Q 042541 165 PVISPGLDVPLKELKMELFKDGRQFIVVSAPGGYGKTTLVQRLCKDDQVQGKF--KDDIFYVTVSKN---PNVKAIVQKV 239 (695)
Q Consensus 165 ~~~~vGr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f--~~~~~wv~~~~~---~~~~~~~~~i 239 (695)
-+.++|++..++.+...+.......+.|+|++|+||||||+.+++.......+ ....-|+.+... .+...+...+
T Consensus 153 ~~~iiGqs~~~~~l~~~ia~~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~~~i~~~l 232 (615)
T TIGR02903 153 FSEIVGQERAIKALLAKVASPFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDPREVTNPL 232 (615)
T ss_pred HHhceeCcHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCHHHHhHHh
Confidence 34579999999999888876667789999999999999999998753332222 111235555421 1222221111
Q ss_pred ---------------HHhcCCCCCCC-------------CChHHHHHHHH-HHHHhcCCCcEEEEEeCCCCCChHHHhh-
Q 042541 240 ---------------LHHKGYPVPEF-------------QTDEAAINDLE-RFFKQMRIEAILLVLDDVWPGSESLLQK- 289 (695)
Q Consensus 240 ---------------~~~l~~~~~~~-------------~~~~~~~~~l~-~~~~~l~~~~~LlVlDdv~~~~~~~~~~- 289 (695)
+...+...... ++....-...+ .+++.+.++++.++-|+.|..++..+..
T Consensus 233 lg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~Q~~Ll~~Le~~~v~~~~~~~~~~~~~~~~~i 312 (615)
T TIGR02903 233 LGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLLQNKLLKVLEDKRVEFSSSYYDPDDPNVPKYI 312 (615)
T ss_pred cCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHHHHHHHHHHHhhCeEEeecceeccCCcccchhh
Confidence 11111100000 00000000111 2224445566666655555443221211
Q ss_pred ---hccCCCCCEEEE--EcCCCCC------CCCCeEecCCCChHHHHHHHHHhccCCCCCCCCCchHHHHHHHHhcCCch
Q 042541 290 ---LGFQLPDYKILV--TSRSEFP------QFGSVHYLKPLTYEAARTLFLHSANLQDGNSYIPDENIVSKILRACKGCP 358 (695)
Q Consensus 290 ---l~~~~~gs~iiv--TtR~~~~------~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~G~P 358 (695)
+....+...++| ||++... .....+.+.+++.++.+.++.+.+..... .-.+++.+.|.+.+..-+
T Consensus 313 k~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~Il~~~a~~~~v---~ls~eal~~L~~ys~~gR 389 (615)
T TIGR02903 313 KKLFEEGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIALIVLNAAEKINV---HLAAGVEELIARYTIEGR 389 (615)
T ss_pred hhhcccCccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHCCCcHH
Confidence 122223333444 5554421 11126788999999999999987653221 112455666666665556
Q ss_pred hHHHHHHHh
Q 042541 359 LALKVVGGS 367 (695)
Q Consensus 359 Lai~~~~~~ 367 (695)
.++..++..
T Consensus 390 raln~L~~~ 398 (615)
T TIGR02903 390 KAVNILADV 398 (615)
T ss_pred HHHHHHHHH
Confidence 666655443
No 93
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.17 E-value=4.9e-05 Score=84.00 Aligned_cols=190 Identities=13% Similarity=0.087 Sum_probs=107.6
Q ss_pred CCCCCCCcchHHHHHHHHHcCCce-EEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCCCCCHHHHHHHHHHhc
Q 042541 165 PVISPGLDVPLKELKMELFKDGRQ-FIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSKNPNVKAIVQKVLHHK 243 (695)
Q Consensus 165 ~~~~vGr~~~~~~l~~~L~~~~~~-vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~~~~~~~~~~~i~~~l 243 (695)
-+.+||.+..++.|..++..+... .+.++|+.|+||||+|+.++.. +.-.... -+..++.+.+ .+.+...-
T Consensus 12 f~eivGq~~i~~~L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~--l~c~~~~--~~~pCg~C~~----C~~i~~~~ 83 (584)
T PRK14952 12 FAEVVGQEHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARS--LNCAQGP--TATPCGVCES----CVALAPNG 83 (584)
T ss_pred HHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHH--hccccCC--CCCcccccHH----HHHhhccc
Confidence 346799999999999999877654 4789999999999999998862 2110000 0001111110 11111000
Q ss_pred C-------CCCCCCCChHHHHHHHHHHHHh--cCCCcEEEEEeCCCCCChH----HHhhhccCCCCCEEEEEcCCCC---
Q 042541 244 G-------YPVPEFQTDEAAINDLERFFKQ--MRIEAILLVLDDVWPGSES----LLQKLGFQLPDYKILVTSRSEF--- 307 (695)
Q Consensus 244 ~-------~~~~~~~~~~~~~~~l~~~~~~--l~~~~~LlVlDdv~~~~~~----~~~~l~~~~~gs~iivTtR~~~--- 307 (695)
+ .... .....+.+..+...... ..++.-++|+|++...... ++..+......+.+|++|....
T Consensus 84 ~~~~dvieidaa-s~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~~kll 162 (584)
T PRK14952 84 PGSIDVVELDAA-SHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVL 162 (584)
T ss_pred CCCceEEEeccc-cccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCChHhhH
Confidence 0 0000 00111222222222211 2356679999999876643 4444544445666666654331
Q ss_pred ---CCCCCeEecCCCChHHHHHHHHHhccCCCCCCCCCchHHHHHHHHhcCCchh-HHHHHHH
Q 042541 308 ---PQFGSVHYLKPLTYEAARTLFLHSANLQDGNSYIPDENIVSKILRACKGCPL-ALKVVGG 366 (695)
Q Consensus 308 ---~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PL-ai~~~~~ 366 (695)
..-+..+++.+++.++..+.+.+.+..... .-..+.+..|++.++|-+. ++..+-.
T Consensus 163 ~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi---~i~~~al~~Ia~~s~GdlR~aln~Ldq 222 (584)
T PRK14952 163 PTIRSRTHHYPFRLLPPRTMRALIARICEQEGV---VVDDAVYPLVIRAGGGSPRDTLSVLDQ 222 (584)
T ss_pred HHHHHhceEEEeeCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 112348999999999998888876643322 1235677889999999774 4444433
No 94
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=98.16 E-value=9.8e-05 Score=80.43 Aligned_cols=172 Identities=14% Similarity=0.112 Sum_probs=108.0
Q ss_pred CCCCCCCcchHHHHHHHHHcCCc-eEEEEEcCCCCcHHHHHHHHhcccc---ccc---------------cCCCcEEEEE
Q 042541 165 PVISPGLDVPLKELKMELFKDGR-QFIVVSAPGGYGKTTLVQRLCKDDQ---VQG---------------KFKDDIFYVT 225 (695)
Q Consensus 165 ~~~~vGr~~~~~~l~~~L~~~~~-~vv~I~G~gGiGKTtLa~~~~~~~~---~~~---------------~f~~~~~wv~ 225 (695)
-+.+||-+...+.+...+..+.. .+..++|+.|+||||+|+.+++.-- -.+ .+...++.++
T Consensus 13 fdeiiGqe~v~~~L~~~I~~grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~dv~eld 92 (535)
T PRK08451 13 FDELIGQESVSKTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHIDIIEMD 92 (535)
T ss_pred HHHccCcHHHHHHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCeEEEec
Confidence 34579988889999998887665 4668999999999999998776210 001 0111122222
Q ss_pred eCCCCCHHHHHHHHHHhcCCCCCCCCChHHHHHHHHHHHHh-----cCCCcEEEEEeCCCCCChH----HHhhhccCCCC
Q 042541 226 VSKNPNVKAIVQKVLHHKGYPVPEFQTDEAAINDLERFFKQ-----MRIEAILLVLDDVWPGSES----LLQKLGFQLPD 296 (695)
Q Consensus 226 ~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~~-----l~~~~~LlVlDdv~~~~~~----~~~~l~~~~~g 296 (695)
.+.... .+.++..++. ..+++-++|+|++...... ++..+....+.
T Consensus 93 aas~~g-------------------------Id~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~ 147 (535)
T PRK08451 93 AASNRG-------------------------IDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSY 147 (535)
T ss_pred cccccC-------------------------HHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHHhhcCCc
Confidence 111111 1222222211 1256679999999777643 44455555556
Q ss_pred CEEEEEcCCCCC------CCCCeEecCCCChHHHHHHHHHhccCCCCCCCCCchHHHHHHHHhcCCchhHHHHH
Q 042541 297 YKILVTSRSEFP------QFGSVHYLKPLTYEAARTLFLHSANLQDGNSYIPDENIVSKILRACKGCPLALKVV 364 (695)
Q Consensus 297 s~iivTtR~~~~------~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~ 364 (695)
+++|++|.+... .-...+++.+++.++....+...+...+. .-.++.+..|++.++|.+.-+..+
T Consensus 148 t~FIL~ttd~~kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi---~i~~~Al~~Ia~~s~GdlR~alnl 218 (535)
T PRK08451 148 VKFILATTDPLKLPATILSRTQHFRFKQIPQNSIISHLKTILEKEGV---SYEPEALEILARSGNGSLRDTLTL 218 (535)
T ss_pred eEEEEEECChhhCchHHHhhceeEEcCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCcHHHHHHH
Confidence 777777765421 12338999999999999988876644322 123678899999999998655444
No 95
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.15 E-value=4.7e-05 Score=75.70 Aligned_cols=185 Identities=17% Similarity=0.203 Sum_probs=112.0
Q ss_pred hHHHHHHHHHcC---CceEEEEEcCCCCcHHHHHHHHhcccccccc---CCCcEEEEEeCCCCCHHHHHHHHHHhcCCCC
Q 042541 174 PLKELKMELFKD---GRQFIVVSAPGGYGKTTLVQRLCKDDQVQGK---FKDDIFYVTVSKNPNVKAIVQKVLHHKGYPV 247 (695)
Q Consensus 174 ~~~~l~~~L~~~---~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~---f~~~~~wv~~~~~~~~~~~~~~i~~~l~~~~ 247 (695)
.++++.+.+..+ ..+-+.|||.+|.|||++++.+......... -..-|+.|.....++...+...|+.+++.+.
T Consensus 45 ~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~ 124 (302)
T PF05621_consen 45 ALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAPY 124 (302)
T ss_pred HHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCccc
Confidence 355665656533 3567999999999999999999864221110 0123778889999999999999999999887
Q ss_pred CCCCChHHHHHHHHHHHHhcCCCcEEEEEeCCCCCC-------hH---HHhhhccCCCCCEEEEEcCCCCC------CCC
Q 042541 248 PEFQTDEAAINDLERFFKQMRIEAILLVLDDVWPGS-------ES---LLQKLGFQLPDYKILVTSRSEFP------QFG 311 (695)
Q Consensus 248 ~~~~~~~~~~~~l~~~~~~l~~~~~LlVlDdv~~~~-------~~---~~~~l~~~~~gs~iivTtR~~~~------~~~ 311 (695)
..............++++.+ +--+||+|++.+.- .. .++.+.....=+-|.|-|+.... ...
T Consensus 125 ~~~~~~~~~~~~~~~llr~~--~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~A~~al~~D~QLa 202 (302)
T PF05621_consen 125 RPRDRVAKLEQQVLRLLRRL--GVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTREAYRALRTDPQLA 202 (302)
T ss_pred CCCCCHHHHHHHHHHHHHHc--CCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHHHHHHhccCHHHH
Confidence 66555544444445555543 35689999996632 11 22333222233556666665411 111
Q ss_pred ---CeEecCCCCh-HHHHHHHHHhccC--CCCCCCCCchHHHHHHHHhcCCchhH
Q 042541 312 ---SVHYLKPLTY-EAARTLFLHSANL--QDGNSYIPDENIVSKILRACKGCPLA 360 (695)
Q Consensus 312 ---~~~~l~~L~~-~ea~~Lf~~~~~~--~~~~~~~~~~~~~~~I~~~c~G~PLa 360 (695)
.++.++.... ++...|+...... -.........+.++.|...++|+.=-
T Consensus 203 ~RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG~ 257 (302)
T PF05621_consen 203 SRFEPFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIGE 257 (302)
T ss_pred hccCCccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchHH
Confidence 1455555443 3444555432211 11122334578999999999997643
No 96
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.15 E-value=7.7e-05 Score=83.72 Aligned_cols=190 Identities=13% Similarity=0.087 Sum_probs=108.6
Q ss_pred CCCCCCCcchHHHHHHHHHcCCc-eEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCCCCCHHHHHHHHHHhc
Q 042541 165 PVISPGLDVPLKELKMELFKDGR-QFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSKNPNVKAIVQKVLHHK 243 (695)
Q Consensus 165 ~~~~vGr~~~~~~l~~~L~~~~~-~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~~~~~~~~~~~i~~~l 243 (695)
-+.+||-+..++.|..++..+.. ..+.++|+.|+||||+|+.+++.-.-...... + ..++.-...+.+....
T Consensus 15 ~~eiiGq~~~~~~L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~---~----~~c~~c~~c~~i~~~~ 87 (585)
T PRK14950 15 FAELVGQEHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPK---G----RPCGTCEMCRAIAEGS 87 (585)
T ss_pred HHHhcCCHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCC---C----CCCccCHHHHHHhcCC
Confidence 34679999999999888886654 55789999999999999999863111010000 0 0111112223332221
Q ss_pred CCCC----CCCCChHHHHHHHHHHHH--hcCCCcEEEEEeCCCCCChH----HHhhhccCCCCCEEEEEcCCCCC-----
Q 042541 244 GYPV----PEFQTDEAAINDLERFFK--QMRIEAILLVLDDVWPGSES----LLQKLGFQLPDYKILVTSRSEFP----- 308 (695)
Q Consensus 244 ~~~~----~~~~~~~~~~~~l~~~~~--~l~~~~~LlVlDdv~~~~~~----~~~~l~~~~~gs~iivTtR~~~~----- 308 (695)
.... .......+.+..+.+.+. ...+++-++|+|++...... ++..+....+.+.+|++|.....
T Consensus 88 ~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~kll~tI 167 (585)
T PRK14950 88 AVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKVPATI 167 (585)
T ss_pred CCeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhhhhHHH
Confidence 1100 000011111222222221 12356779999999766543 44444444456677766644311
Q ss_pred -CCCCeEecCCCChHHHHHHHHHhccCCCCCCCCCchHHHHHHHHhcCCchhHHHHH
Q 042541 309 -QFGSVHYLKPLTYEAARTLFLHSANLQDGNSYIPDENIVSKILRACKGCPLALKVV 364 (695)
Q Consensus 309 -~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~ 364 (695)
.....+.+.+++.++....+...+...+.. -..+.+..|++.++|.+..+...
T Consensus 168 ~SR~~~i~f~~l~~~el~~~L~~~a~~egl~---i~~eal~~La~~s~Gdlr~al~~ 221 (585)
T PRK14950 168 LSRCQRFDFHRHSVADMAAHLRKIAAAEGIN---LEPGALEAIARAATGSMRDAENL 221 (585)
T ss_pred HhccceeeCCCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHHHHH
Confidence 122478899999999988888776543321 23577889999999988655443
No 97
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.15 E-value=5.9e-06 Score=84.93 Aligned_cols=101 Identities=15% Similarity=0.127 Sum_probs=65.5
Q ss_pred HHHHHHH-cCCceEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCCCC--CHHHHHHHHHHhcCCCCCCCCCh
Q 042541 177 ELKMELF-KDGRQFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSKNP--NVKAIVQKVLHHKGYPVPEFQTD 253 (695)
Q Consensus 177 ~l~~~L~-~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~~~--~~~~~~~~i~~~l~~~~~~~~~~ 253 (695)
++++.+. -+..+..+|+|++|+||||||+.+|++.... +|+. ..||.+.+.. .+.++++.+...+-....+....
T Consensus 158 rvID~l~PIGkGQR~lIvgppGvGKTTLaK~Ian~I~~n-hFDv-~~~VvLIgER~~EVtdiqrsIlg~vv~st~d~~~~ 235 (416)
T PRK09376 158 RIIDLIAPIGKGQRGLIVAPPKAGKTVLLQNIANSITTN-HPEV-HLIVLLIDERPEEVTDMQRSVKGEVVASTFDEPAE 235 (416)
T ss_pred eeeeeecccccCceEEEeCCCCCChhHHHHHHHHHHHhh-cCCe-EEEEEEeCCchhHHHHHHHHhcCcEEEECCCCCHH
Confidence 4445554 2345778999999999999999999964443 8887 6799998887 77888888864332222221111
Q ss_pred H------HHHHHHHHHHHhcCCCcEEEEEeCCCC
Q 042541 254 E------AAINDLERFFKQMRIEAILLVLDDVWP 281 (695)
Q Consensus 254 ~------~~~~~l~~~~~~l~~~~~LlVlDdv~~ 281 (695)
. ...+....+. -.+++++|++|++..
T Consensus 236 ~~~~~a~~~ie~Ae~~~--e~G~dVlL~iDsItR 267 (416)
T PRK09376 236 RHVQVAEMVIEKAKRLV--EHGKDVVILLDSITR 267 (416)
T ss_pred HHHHHHHHHHHHHHHHH--HcCCCEEEEEEChHH
Confidence 1 1111111111 268999999999854
No 98
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=98.15 E-value=0.00017 Score=77.96 Aligned_cols=182 Identities=14% Similarity=0.118 Sum_probs=109.2
Q ss_pred CCCCCCCcch--HHHHHHHHHcCC--ceEEEEEcCCCCcHHHHHHHHhccccccc-cCCCcEEEEEeCCCCCHHHHHHHH
Q 042541 165 PVISPGLDVP--LKELKMELFKDG--RQFIVVSAPGGYGKTTLVQRLCKDDQVQG-KFKDDIFYVTVSKNPNVKAIVQKV 239 (695)
Q Consensus 165 ~~~~vGr~~~--~~~l~~~L~~~~--~~vv~I~G~gGiGKTtLa~~~~~~~~~~~-~f~~~~~wv~~~~~~~~~~~~~~i 239 (695)
..+++|.... ......+...++ ..-+.|+|..|+|||.|++++.+ .+.. +-...+++++. .++...+
T Consensus 115 dnFv~g~~n~~A~~aa~~~a~~~~~~~npl~i~G~~G~GKTHLl~Ai~~--~l~~~~~~~~v~yv~~------~~f~~~~ 186 (450)
T PRK14087 115 ENFVIGSSNEQAFIAVQTVSKNPGISYNPLFIYGESGMGKTHLLKAAKN--YIESNFSDLKVSYMSG------DEFARKA 186 (450)
T ss_pred hcccCCCcHHHHHHHHHHHHhCcCcccCceEEECCCCCcHHHHHHHHHH--HHHHhCCCCeEEEEEH------HHHHHHH
Confidence 4456776543 222222222222 34589999999999999999988 3332 22333555543 4566666
Q ss_pred HHhcCCCCCCCCChHHHHHHHHHHHHhcCCCcEEEEEeCCCCCC--hH----HHhhhcc-CCCCCEEEEEcCCCCC----
Q 042541 240 LHHKGYPVPEFQTDEAAINDLERFFKQMRIEAILLVLDDVWPGS--ES----LLQKLGF-QLPDYKILVTSRSEFP---- 308 (695)
Q Consensus 240 ~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~~~LlVlDdv~~~~--~~----~~~~l~~-~~~gs~iivTtR~~~~---- 308 (695)
...++... ..+....+.++ ..-+||+||+.... +. +..-+.. ...|..||+|+.....
T Consensus 187 ~~~l~~~~----------~~~~~~~~~~~-~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~ 255 (450)
T PRK14087 187 VDILQKTH----------KEIEQFKNEIC-QNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNG 255 (450)
T ss_pred HHHHHHhh----------hHHHHHHHHhc-cCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhh
Confidence 66654210 12222333333 34588999996543 21 2222211 1235578888775521
Q ss_pred ---------CCCCeEecCCCChHHHHHHHHHhccCCCCCCCCCchHHHHHHHHhcCCchhHHHHHHH
Q 042541 309 ---------QFGSVHYLKPLTYEAARTLFLHSANLQDGNSYIPDENIVSKILRACKGCPLALKVVGG 366 (695)
Q Consensus 309 ---------~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~~~ 366 (695)
..|..+.+++++.++-.+++.+++...... ..-.+++..-|++.++|.|..+.-+..
T Consensus 256 l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~~~~~~~gl~-~~l~~evl~~Ia~~~~gd~R~L~gaL~ 321 (450)
T PRK14087 256 FDNRLITRFNMGLSIAIQKLDNKTATAIIKKEIKNQNIK-QEVTEEAINFISNYYSDDVRKIKGSVS 321 (450)
T ss_pred ccHHHHHHHhCCceeccCCcCHHHHHHHHHHHHHhcCCC-CCCCHHHHHHHHHccCCCHHHHHHHHH
Confidence 224478899999999999999887543211 123478899999999999987776553
No 99
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=98.15 E-value=5.2e-05 Score=87.19 Aligned_cols=171 Identities=12% Similarity=0.066 Sum_probs=104.9
Q ss_pred CCCCCCcchHHHHHHHHHcCCc-eEEEEEcCCCCcHHHHHHHHhccccccccC---CCc-----------------EEEE
Q 042541 166 VISPGLDVPLKELKMELFKDGR-QFIVVSAPGGYGKTTLVQRLCKDDQVQGKF---KDD-----------------IFYV 224 (695)
Q Consensus 166 ~~~vGr~~~~~~l~~~L~~~~~-~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f---~~~-----------------~~wv 224 (695)
..+||.+..++.|..++..+.. ..+.++|+.|+||||+|+.+.+...-.... .|+ ++++
T Consensus 15 ~eiiGqe~v~~~L~~~i~~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~~g~~~~~dv~ei 94 (824)
T PRK07764 15 AEVIGQEHVTEPLSTALDSGRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALAPGGPGSLDVTEI 94 (824)
T ss_pred HHhcCcHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHHcCCCCCCcEEEe
Confidence 4579999999999999987665 457899999999999999987631110110 110 1122
Q ss_pred EeCCCCCHHHHHHHHHHhcCCCCCCCCChHHHHHHHHHHH--HhcCCCcEEEEEeCCCCCChH----HHhhhccCCCCCE
Q 042541 225 TVSKNPNVKAIVQKVLHHKGYPVPEFQTDEAAINDLERFF--KQMRIEAILLVLDDVWPGSES----LLQKLGFQLPDYK 298 (695)
Q Consensus 225 ~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~--~~l~~~~~LlVlDdv~~~~~~----~~~~l~~~~~gs~ 298 (695)
+-.... ..+.+..+.+.. .-..++.-++|||+++..... +++.+......+.
T Consensus 95 daas~~----------------------~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~ 152 (824)
T PRK07764 95 DAASHG----------------------GVDDARELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLK 152 (824)
T ss_pred cccccC----------------------CHHHHHHHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeE
Confidence 111111 111112222211 223466778999999877644 4555555555677
Q ss_pred EEEEcCCCCC------CCCCeEecCCCChHHHHHHHHHhccCCCCCCCCCchHHHHHHHHhcCCchhHH
Q 042541 299 ILVTSRSEFP------QFGSVHYLKPLTYEAARTLFLHSANLQDGNSYIPDENIVSKILRACKGCPLAL 361 (695)
Q Consensus 299 iivTtR~~~~------~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai 361 (695)
+|++|.+... .-+..|++..++.++..+++.+.+..... .-..+....|++.++|.+..+
T Consensus 153 fIl~tt~~~kLl~TIrSRc~~v~F~~l~~~~l~~~L~~il~~EGv---~id~eal~lLa~~sgGdlR~A 218 (824)
T PRK07764 153 FIFATTEPDKVIGTIRSRTHHYPFRLVPPEVMRGYLERICAQEGV---PVEPGVLPLVIRAGGGSVRDS 218 (824)
T ss_pred EEEEeCChhhhhHHHHhheeEEEeeCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHH
Confidence 7766643311 12347899999999998888876533222 123566788999999988443
No 100
>PRK09087 hypothetical protein; Validated
Probab=98.14 E-value=4.7e-05 Score=74.39 Aligned_cols=135 Identities=14% Similarity=0.145 Sum_probs=86.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCCCCCHHHHHHHHHHhcCCCCCCCCChHHHHHHHHHHHHh
Q 042541 187 RQFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSKNPNVKAIVQKVLHHKGYPVPEFQTDEAAINDLERFFKQ 266 (695)
Q Consensus 187 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~~ 266 (695)
.+.+.|+|+.|+|||+|++.++.. . . +.|++.. .+...++. .
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~--~----~--~~~i~~~------~~~~~~~~------------------------~ 85 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREK--S----D--ALLIHPN------EIGSDAAN------------------------A 85 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHh--c----C--CEEecHH------HcchHHHH------------------------h
Confidence 467999999999999999988863 1 1 2244332 11111111 1
Q ss_pred cCCCcEEEEEeCCCCCC---hHHHhhhcc-CCCCCEEEEEcCCCCC-------------CCCCeEecCCCChHHHHHHHH
Q 042541 267 MRIEAILLVLDDVWPGS---ESLLQKLGF-QLPDYKILVTSRSEFP-------------QFGSVHYLKPLTYEAARTLFL 329 (695)
Q Consensus 267 l~~~~~LlVlDdv~~~~---~~~~~~l~~-~~~gs~iivTtR~~~~-------------~~~~~~~l~~L~~~ea~~Lf~ 329 (695)
+.+ -+|++||+.... +.+...+.. ...|..+|+|++.... ..+..+++++++.++-.+++.
T Consensus 86 ~~~--~~l~iDDi~~~~~~~~~lf~l~n~~~~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~ 163 (226)
T PRK09087 86 AAE--GPVLIEDIDAGGFDETGLFHLINSVRQAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIF 163 (226)
T ss_pred hhc--CeEEEECCCCCCCCHHHHHHHHHHHHhCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHH
Confidence 111 378889995432 223333322 2237789999986411 234589999999999999999
Q ss_pred HhccCCCCCCCCCchHHHHHHHHhcCCchhHHHHH
Q 042541 330 HSANLQDGNSYIPDENIVSKILRACKGCPLALKVV 364 (695)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~ 364 (695)
+.+....- .-.+++..-|++.+.|..-++..+
T Consensus 164 ~~~~~~~~---~l~~ev~~~La~~~~r~~~~l~~~ 195 (226)
T PRK09087 164 KLFADRQL---YVDPHVVYYLVSRMERSLFAAQTI 195 (226)
T ss_pred HHHHHcCC---CCCHHHHHHHHHHhhhhHHHHHHH
Confidence 88754322 224788999999999887766643
No 101
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=98.13 E-value=3e-05 Score=86.10 Aligned_cols=192 Identities=15% Similarity=0.121 Sum_probs=110.5
Q ss_pred CCCCCCCCcchHHHHHHHHHcCCc-eEEEEEcCCCCcHHHHHHHHhccccccccCC--C-cEEEEEeCCCCCHHHHHHHH
Q 042541 164 PPVISPGLDVPLKELKMELFKDGR-QFIVVSAPGGYGKTTLVQRLCKDDQVQGKFK--D-DIFYVTVSKNPNVKAIVQKV 239 (695)
Q Consensus 164 ~~~~~vGr~~~~~~l~~~L~~~~~-~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~--~-~~~wv~~~~~~~~~~~~~~i 239 (695)
.-+.++|.+..++.|...+..+.. .-+.++|+.|+||||+|+.+++. +.-... . +.-+-.+..+ .-.+.|
T Consensus 22 ~f~dliGq~~~v~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~--L~c~~~~~~~~~~~~~cg~c----~~C~~i 95 (598)
T PRK09111 22 TFDDLIGQEAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARA--LNYEGPDGDGGPTIDLCGVG----EHCQAI 95 (598)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHh--hCcCCccccCCCccccCccc----HHHHHH
Confidence 345679999999999999987764 46889999999999999999873 211110 0 0000001111 111112
Q ss_pred HHhcCCCCCCCC-ChHHHHHHHHHHHHh-----cCCCcEEEEEeCCCCCChH----HHhhhccCCCCCEEEEEcCCC-C-
Q 042541 240 LHHKGYPVPEFQ-TDEAAINDLERFFKQ-----MRIEAILLVLDDVWPGSES----LLQKLGFQLPDYKILVTSRSE-F- 307 (695)
Q Consensus 240 ~~~l~~~~~~~~-~~~~~~~~l~~~~~~-----l~~~~~LlVlDdv~~~~~~----~~~~l~~~~~gs~iivTtR~~-~- 307 (695)
...-........ .....++.++++++. ..+++-++|+|++...... +++.+....+++++|++|... .
T Consensus 96 ~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte~~kl 175 (598)
T PRK09111 96 MEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEIRKV 175 (598)
T ss_pred hcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCChhhh
Confidence 111100000000 000112233333322 2355678999999776643 444554555667777666332 1
Q ss_pred ----CCCCCeEecCCCChHHHHHHHHHhccCCCCCCCCCchHHHHHHHHhcCCchhHHHHH
Q 042541 308 ----PQFGSVHYLKPLTYEAARTLFLHSANLQDGNSYIPDENIVSKILRACKGCPLALKVV 364 (695)
Q Consensus 308 ----~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~ 364 (695)
..-...+.+.+++.++....+.+.+..... .-..+.+..|++.++|.+.-+...
T Consensus 176 l~tI~SRcq~~~f~~l~~~el~~~L~~i~~kegi---~i~~eAl~lIa~~a~Gdlr~al~~ 233 (598)
T PRK09111 176 PVTVLSRCQRFDLRRIEADVLAAHLSRIAAKEGV---EVEDEALALIARAAEGSVRDGLSL 233 (598)
T ss_pred hHHHHhheeEEEecCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 112237899999999999999887643322 123577899999999998655443
No 102
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.12 E-value=0.00016 Score=70.43 Aligned_cols=175 Identities=18% Similarity=0.238 Sum_probs=99.0
Q ss_pred CCCCCCcch-HHHHHHHHH-cCC--ceEEEEEcCCCCcHHHHHHHHhcccccccc-CCCcEEEEEeCCCCCHHHHHHHHH
Q 042541 166 VISPGLDVP-LKELKMELF-KDG--RQFIVVSAPGGYGKTTLVQRLCKDDQVQGK-FKDDIFYVTVSKNPNVKAIVQKVL 240 (695)
Q Consensus 166 ~~~vGr~~~-~~~l~~~L~-~~~--~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~-f~~~~~wv~~~~~~~~~~~~~~i~ 240 (695)
.+++|-..+ .-.....+. .++ ...+.|+|..|+|||.|.+++++ .+... -...++|++. .++...+.
T Consensus 9 nfv~g~~N~~a~~~~~~ia~~~~~~~~~l~l~G~~G~GKTHLL~Ai~~--~~~~~~~~~~v~y~~~------~~f~~~~~ 80 (219)
T PF00308_consen 9 NFVVGESNELAYAAAKAIAENPGERYNPLFLYGPSGLGKTHLLQAIAN--EAQKQHPGKRVVYLSA------EEFIREFA 80 (219)
T ss_dssp CS--TTTTHHHHHHHHHHHHSTTTSSSEEEEEESTTSSHHHHHHHHHH--HHHHHCTTS-EEEEEH------HHHHHHHH
T ss_pred cCCcCCcHHHHHHHHHHHHhcCCCCCCceEEECCCCCCHHHHHHHHHH--HHHhccccccceeecH------HHHHHHHH
Confidence 445674333 233333343 322 35689999999999999999998 44433 2344667644 34555555
Q ss_pred HhcCCCCCCCCChHHHHHHHHHHHHhcCCCcEEEEEeCCCCCChH------HHhhhcc-CCCCCEEEEEcCCCCCC----
Q 042541 241 HHKGYPVPEFQTDEAAINDLERFFKQMRIEAILLVLDDVWPGSES------LLQKLGF-QLPDYKILVTSRSEFPQ---- 309 (695)
Q Consensus 241 ~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~~~LlVlDdv~~~~~~------~~~~l~~-~~~gs~iivTtR~~~~~---- 309 (695)
..+... . +..+.+.++ .-=+|++||++..... +..-+.. ...|.++|+|+......
T Consensus 81 ~~~~~~-----~-------~~~~~~~~~-~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~ 147 (219)
T PF00308_consen 81 DALRDG-----E-------IEEFKDRLR-SADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGL 147 (219)
T ss_dssp HHHHTT-----S-------HHHHHHHHC-TSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS
T ss_pred HHHHcc-----c-------chhhhhhhh-cCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCcccccc
Confidence 554321 1 122223333 3558899999654421 1111111 12477999999776322
Q ss_pred ---------CCCeEecCCCChHHHHHHHHHhccCCCCCCCCCchHHHHHHHHhcCCchhHHHHH
Q 042541 310 ---------FGSVHYLKPLTYEAARTLFLHSANLQDGNSYIPDENIVSKILRACKGCPLALKVV 364 (695)
Q Consensus 310 ---------~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~ 364 (695)
.|..+++++.+.++...++.+.+....-. -.++++.-|++.+.+..-.+..+
T Consensus 148 ~~~L~SRl~~Gl~~~l~~pd~~~r~~il~~~a~~~~~~---l~~~v~~~l~~~~~~~~r~L~~~ 208 (219)
T PF00308_consen 148 LPDLRSRLSWGLVVELQPPDDEDRRRILQKKAKERGIE---LPEEVIEYLARRFRRDVRELEGA 208 (219)
T ss_dssp -HHHHHHHHCSEEEEE----HHHHHHHHHHHHHHTT-----S-HHHHHHHHHHTTSSHHHHHHH
T ss_pred ChhhhhhHhhcchhhcCCCCHHHHHHHHHHHHHHhCCC---CcHHHHHHHHHhhcCCHHHHHHH
Confidence 23389999999999999999887644332 23678888888888766555443
No 103
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=98.11 E-value=7.3e-05 Score=75.30 Aligned_cols=159 Identities=17% Similarity=0.226 Sum_probs=101.7
Q ss_pred CCCCCCCcchHHHHHHHHHcCC---ceEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCCCCCHHHHHHHHHH
Q 042541 165 PVISPGLDVPLKELKMELFKDG---RQFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSKNPNVKAIVQKVLH 241 (695)
Q Consensus 165 ~~~~vGr~~~~~~l~~~L~~~~---~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~~~~~~~~~~~i~~ 241 (695)
.+.+.+|+.++..+...+-+.. +..|.|+|..|.|||.+.+.+++.. .. .-+|+++-++++...++..|+.
T Consensus 5 ~~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~--n~----~~vw~n~~ecft~~~lle~IL~ 78 (438)
T KOG2543|consen 5 EPNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKL--NL----ENVWLNCVECFTYAILLEKILN 78 (438)
T ss_pred ccCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhc--CC----cceeeehHHhccHHHHHHHHHH
Confidence 4567899999999988887443 4567899999999999999999843 11 2349999999999999999999
Q ss_pred hcC-CCCCCCCChH--HHHHHHHHHHH---hc--CCCcEEEEEeCCCCCChH---HHhhhc-----cCCCCCEEEEEcCC
Q 042541 242 HKG-YPVPEFQTDE--AAINDLERFFK---QM--RIEAILLVLDDVWPGSES---LLQKLG-----FQLPDYKILVTSRS 305 (695)
Q Consensus 242 ~l~-~~~~~~~~~~--~~~~~l~~~~~---~l--~~~~~LlVlDdv~~~~~~---~~~~l~-----~~~~gs~iivTtR~ 305 (695)
..+ .+.++..... +........++ .. +++.++||||+++...+. ++..+. ...+.. +|+++-.
T Consensus 79 ~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~~~~i-~iils~~ 157 (438)
T KOG2543|consen 79 KSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQCLFRLYELLNEPTI-VIILSAP 157 (438)
T ss_pred HhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccchHHHHHHHHHHHHhCCCce-EEEEecc
Confidence 986 2222211111 22222233331 12 356899999998654321 222111 122333 3444433
Q ss_pred C-----CCCCCC----eEecCCCChHHHHHHHHH
Q 042541 306 E-----FPQFGS----VHYLKPLTYEAARTLFLH 330 (695)
Q Consensus 306 ~-----~~~~~~----~~~l~~L~~~ea~~Lf~~ 330 (695)
. ....|+ ++..+.-+.+|...++.+
T Consensus 158 ~~e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~ 191 (438)
T KOG2543|consen 158 SCEKQYLINTGTLEIVVLHFPQYSVEETQVILSR 191 (438)
T ss_pred ccHHHhhcccCCCCceEEecCCCCHHHHHHHHhc
Confidence 2 111232 677888899999888865
No 104
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.11 E-value=1.6e-06 Score=90.47 Aligned_cols=162 Identities=16% Similarity=0.152 Sum_probs=109.5
Q ss_pred ccceEEeeecCCcccCCC-----CCCCC-CceEEEEEEccCcc----ccCChhhcCCCCCcEEEEcccCCCCcccCcc-c
Q 042541 527 NNASLLSISTDETFSSNW-----PDMQG-PEVKVVVLNIRTKK----YVLPDFLQKMDELKVLIVTNYGFSPAELNNF-R 595 (695)
Q Consensus 527 ~~~r~l~~~~~~~~~~~~-----~~~~~-~~l~~L~l~~~~~~----~~~p~~~~~l~~Lr~L~l~~~~~~~~~~~~~-~ 595 (695)
...+++.+.......... .-..+ ++|+.|.+..+... ..++..+..+.+|+.|++++|++....+..+ .
T Consensus 108 ~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~ 187 (319)
T cd00116 108 SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAE 187 (319)
T ss_pred CcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHH
Confidence 357777776553321000 01134 78999999988654 2345567788899999999988754332221 2
Q ss_pred ccccCCCCcEEEeccCCCC-----Ccc-cccccccccEEeeccccCCcccc-cchhhhcccCCCccEEeccccccc----
Q 042541 596 VLSALSKLKKIRLEHVSLP-----NSL-ATVRMNHLQKVSLVMCNVGQVFR-NSTFRISDAFPNLLEMDIDYCNDL---- 664 (695)
Q Consensus 596 ~l~~l~~L~~L~L~~~~l~-----~lp-~i~~l~~L~~L~l~~~~i~~~~~-~~~~~l~~~l~~L~~L~l~~c~~l---- 664 (695)
.+..+++|++|++++|.+. .++ .+..+++|++|++++|.++.... .+...++...++|+.|++++|...
T Consensus 188 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~ 267 (319)
T cd00116 188 GLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGA 267 (319)
T ss_pred HHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHH
Confidence 3456679999999999886 234 56678999999999998875222 122111112489999999998532
Q ss_pred ccCchhhcCCCCCceeecccccCCC
Q 042541 665 IELPDGLCDIVSMEKLRITNCHRLS 689 (695)
Q Consensus 665 ~~lP~~i~~L~~L~~L~l~~~~~l~ 689 (695)
..++..+..+++|++|++++|. ++
T Consensus 268 ~~l~~~~~~~~~L~~l~l~~N~-l~ 291 (319)
T cd00116 268 KDLAEVLAEKESLLELDLRGNK-FG 291 (319)
T ss_pred HHHHHHHhcCCCccEEECCCCC-Cc
Confidence 3456667788999999999976 44
No 105
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.11 E-value=6.3e-05 Score=82.90 Aligned_cols=192 Identities=14% Similarity=0.081 Sum_probs=108.5
Q ss_pred CCCCCCcchHHHHHHHHHcCC-ceEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCCCCCHHHHHHHHHHhcC
Q 042541 166 VISPGLDVPLKELKMELFKDG-RQFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSKNPNVKAIVQKVLHHKG 244 (695)
Q Consensus 166 ~~~vGr~~~~~~l~~~L~~~~-~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~~~~~~~~~~~i~~~l~ 244 (695)
+.++|-+..++.|...+..+. ...+.++|+.|+||||+|+.+++..--...... ..+..+ ...+.+.....
T Consensus 16 ~dIiGQe~v~~~L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~----~pCg~C----~sC~~i~~g~h 87 (624)
T PRK14959 16 AEVAGQETVKAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTG----EPCNTC----EQCRKVTQGMH 87 (624)
T ss_pred HHhcCCHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhccccCCCCC----CCCccc----HHHHHHhcCCC
Confidence 456898888888888887665 567889999999999999998873211000000 000111 11111111100
Q ss_pred CCC----CCCCChHHHHHHHHHHHH--hcCCCcEEEEEeCCCCCChH----HHhhhccCCCCCEEEEEcCCCCC------
Q 042541 245 YPV----PEFQTDEAAINDLERFFK--QMRIEAILLVLDDVWPGSES----LLQKLGFQLPDYKILVTSRSEFP------ 308 (695)
Q Consensus 245 ~~~----~~~~~~~~~~~~l~~~~~--~l~~~~~LlVlDdv~~~~~~----~~~~l~~~~~gs~iivTtR~~~~------ 308 (695)
... .......+....+.+.+. ...+++-++|+|++...... ++..+....+...+|++|.....
T Consensus 88 pDv~eId~a~~~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~~kll~TI~ 167 (624)
T PRK14959 88 VDVVEIDGASNRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHKFPVTIV 167 (624)
T ss_pred CceEEEecccccCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCChhhhhHHHH
Confidence 000 000001112222332221 22466779999999777543 44444333345666666654311
Q ss_pred CCCCeEecCCCChHHHHHHHHHhccCCCCCCCCCchHHHHHHHHhcCCch-hHHHHHHHhh
Q 042541 309 QFGSVHYLKPLTYEAARTLFLHSANLQDGNSYIPDENIVSKILRACKGCP-LALKVVGGSL 368 (695)
Q Consensus 309 ~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~G~P-Lai~~~~~~L 368 (695)
.-...+++++++.++....+...+..... .-..+.+..|++.++|.+ .|+..+..++
T Consensus 168 SRcq~i~F~pLs~~eL~~~L~~il~~egi---~id~eal~lIA~~s~GdlR~Al~lLeqll 225 (624)
T PRK14959 168 SRCQHFTFTRLSEAGLEAHLTKVLGREGV---DYDPAAVRLIARRAAGSVRDSMSLLGQVL 225 (624)
T ss_pred hhhhccccCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 11237899999999999888876643322 124677899999999965 6777765444
No 106
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=98.10 E-value=9.4e-05 Score=82.80 Aligned_cols=183 Identities=14% Similarity=0.114 Sum_probs=103.5
Q ss_pred CCCCCCCcchHHHHHHHHHcCC-ceEEEEEcCCCCcHHHHHHHHhccccccc-cCCCcEEEEEeCCCCCHHHHHHHHHHh
Q 042541 165 PVISPGLDVPLKELKMELFKDG-RQFIVVSAPGGYGKTTLVQRLCKDDQVQG-KFKDDIFYVTVSKNPNVKAIVQKVLHH 242 (695)
Q Consensus 165 ~~~~vGr~~~~~~l~~~L~~~~-~~vv~I~G~gGiGKTtLa~~~~~~~~~~~-~f~~~~~wv~~~~~~~~~~~~~~i~~~ 242 (695)
-..++|-+..++.|...+..+. ...+.++|+.|+||||+|+.++.. +-. +... .+-.+..+ ...
T Consensus 17 f~dIiGQe~~v~~L~~aI~~~rl~HAYLF~GP~GtGKTt~AriLAk~--LnC~~~~~--~~~pC~~C-------~~~--- 82 (725)
T PRK07133 17 FDDIVGQDHIVQTLKNIIKSNKISHAYLFSGPRGTGKTSVAKIFANA--LNCSHKTD--LLEPCQEC-------IEN--- 82 (725)
T ss_pred HHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHH--hcccccCC--CCCchhHH-------HHh---
Confidence 3457999999999999998766 456789999999999999998762 211 1000 00000000 000
Q ss_pred cCCCC------CCCCChHHHHHHHHHHHHh--cCCCcEEEEEeCCCCCChH----HHhhhccCCCCCEEEEEcCCCC-C-
Q 042541 243 KGYPV------PEFQTDEAAINDLERFFKQ--MRIEAILLVLDDVWPGSES----LLQKLGFQLPDYKILVTSRSEF-P- 308 (695)
Q Consensus 243 l~~~~------~~~~~~~~~~~~l~~~~~~--l~~~~~LlVlDdv~~~~~~----~~~~l~~~~~gs~iivTtR~~~-~- 308 (695)
.+... .......+.+..+.+.... ..+++-++|+|++...... ++..+....+.+.+|++|.... .
T Consensus 83 ~~~~~Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~KLl 162 (725)
T PRK07133 83 VNNSLDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHKIP 162 (725)
T ss_pred hcCCCcEEEEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChhhhh
Confidence 00000 0000111122233332222 2367779999999766533 3444444444556555554331 1
Q ss_pred ----CCCCeEecCCCChHHHHHHHHHhccCCCCCCCCCchHHHHHHHHhcCCchh-HHHHH
Q 042541 309 ----QFGSVHYLKPLTYEAARTLFLHSANLQDGNSYIPDENIVSKILRACKGCPL-ALKVV 364 (695)
Q Consensus 309 ----~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PL-ai~~~ 364 (695)
.-+..+++.+++.++....+...+...+. .-..+.+..|++.++|.+. |+..+
T Consensus 163 ~TI~SRcq~ieF~~L~~eeI~~~L~~il~kegI---~id~eAl~~LA~lS~GslR~AlslL 220 (725)
T PRK07133 163 LTILSRVQRFNFRRISEDEIVSRLEFILEKENI---SYEKNALKLIAKLSSGSLRDALSIA 220 (725)
T ss_pred HHHHhhceeEEccCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 11238999999999999888876543222 1135668899999999765 44433
No 107
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.09 E-value=0.00013 Score=79.49 Aligned_cols=173 Identities=14% Similarity=0.109 Sum_probs=104.5
Q ss_pred CCCCCCcchHHHHHHHHHcCCc-eEEEEEcCCCCcHHHHHHHHhccccccc----c-CCCc---------------EEEE
Q 042541 166 VISPGLDVPLKELKMELFKDGR-QFIVVSAPGGYGKTTLVQRLCKDDQVQG----K-FKDD---------------IFYV 224 (695)
Q Consensus 166 ~~~vGr~~~~~~l~~~L~~~~~-~vv~I~G~gGiGKTtLa~~~~~~~~~~~----~-f~~~---------------~~wv 224 (695)
..++|-+..++.+..++..+.. ..+.++|+.|+||||+|+.++.. +.. . .+++ ++++
T Consensus 16 ~diiGq~~i~~~L~~~i~~~~i~hayLf~Gp~G~GKTtlAr~lAk~--L~c~~~~~~~pc~~c~nc~~i~~g~~~d~~ei 93 (486)
T PRK14953 16 KEVIGQEIVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKV--LNCLNPQEGEPCGKCENCVEIDKGSFPDLIEI 93 (486)
T ss_pred HHccChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHH--hcCcCCCCCCCCCccHHHHHHhcCCCCcEEEE
Confidence 4578999999999999987654 45678999999999999988762 210 0 1110 2222
Q ss_pred EeCCCCCHHHHHHHHHHhcCCCCCCCCChHHHHHHHHHHHHh--cCCCcEEEEEeCCCCCChH----HHhhhccCCCCCE
Q 042541 225 TVSKNPNVKAIVQKVLHHKGYPVPEFQTDEAAINDLERFFKQ--MRIEAILLVLDDVWPGSES----LLQKLGFQLPDYK 298 (695)
Q Consensus 225 ~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~~--l~~~~~LlVlDdv~~~~~~----~~~~l~~~~~gs~ 298 (695)
+.+.. ...+....+...... ..+++-++|+|+++..... ++..+....+.+.
T Consensus 94 daas~----------------------~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v 151 (486)
T PRK14953 94 DAASN----------------------RGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTI 151 (486)
T ss_pred eCccC----------------------CCHHHHHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeE
Confidence 11111 111112223322222 2466789999999766532 3444444444556
Q ss_pred EEEEcCCC-C-----CCCCCeEecCCCChHHHHHHHHHhccCCCCCCCCCchHHHHHHHHhcCCchhHHHHHH
Q 042541 299 ILVTSRSE-F-----PQFGSVHYLKPLTYEAARTLFLHSANLQDGNSYIPDENIVSKILRACKGCPLALKVVG 365 (695)
Q Consensus 299 iivTtR~~-~-----~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~~ 365 (695)
+|++|... . ...+..+.+.+++.++....+...+...+. .-..+.+..|++.++|.+..+....
T Consensus 152 ~Il~tt~~~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~egi---~id~~al~~La~~s~G~lr~al~~L 221 (486)
T PRK14953 152 FILCTTEYDKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKI---EYEEKALDLLAQASEGGMRDAASLL 221 (486)
T ss_pred EEEEECCHHHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 55554322 1 112347899999999998888876643322 1235678889999999876554443
No 108
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=98.05 E-value=0.00017 Score=78.04 Aligned_cols=175 Identities=18% Similarity=0.122 Sum_probs=104.5
Q ss_pred CCCCCCCcchHHHHHHHHHcCCc-eEEEEEcCCCCcHHHHHHHHhccccccc----cCCC---------------cEEEE
Q 042541 165 PVISPGLDVPLKELKMELFKDGR-QFIVVSAPGGYGKTTLVQRLCKDDQVQG----KFKD---------------DIFYV 224 (695)
Q Consensus 165 ~~~~vGr~~~~~~l~~~L~~~~~-~vv~I~G~gGiGKTtLa~~~~~~~~~~~----~f~~---------------~~~wv 224 (695)
-+.++|.+..++.+..++..+.. ..+.++|+.|+||||+|+.+++.---.. .-.+ .++++
T Consensus 16 ~~diiGq~~~v~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d~~~i 95 (451)
T PRK06305 16 FSEILGQDAVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLDVLEI 95 (451)
T ss_pred HHHhcCcHHHHHHHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCceEEe
Confidence 34679999999999999987664 5688999999999999998876211000 0000 01111
Q ss_pred EeCCCCCHHHHHHHHHHhcCCCCCCCCChHHHHHHHHHHH--HhcCCCcEEEEEeCCCCCChH----HHhhhccCCCCCE
Q 042541 225 TVSKNPNVKAIVQKVLHHKGYPVPEFQTDEAAINDLERFF--KQMRIEAILLVLDDVWPGSES----LLQKLGFQLPDYK 298 (695)
Q Consensus 225 ~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~--~~l~~~~~LlVlDdv~~~~~~----~~~~l~~~~~gs~ 298 (695)
.-...... +.+..+.+.+ ....+++-++|+|++...... ++..+....+++.
T Consensus 96 ~g~~~~gi----------------------d~ir~i~~~l~~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~~ 153 (451)
T PRK06305 96 DGASHRGI----------------------EDIRQINETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVK 153 (451)
T ss_pred eccccCCH----------------------HHHHHHHHHHHhhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCce
Confidence 11011111 1112222222 112366778999998765432 3444444445667
Q ss_pred EEEEcCCCC------CCCCCeEecCCCChHHHHHHHHHhccCCCCCCCCCchHHHHHHHHhcCCchh-HHHHH
Q 042541 299 ILVTSRSEF------PQFGSVHYLKPLTYEAARTLFLHSANLQDGNSYIPDENIVSKILRACKGCPL-ALKVV 364 (695)
Q Consensus 299 iivTtR~~~------~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PL-ai~~~ 364 (695)
+|++|.... ..-...+++.++++++....+...+...+. .-..+.+..|++.++|.+. |+..+
T Consensus 154 ~Il~t~~~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg~---~i~~~al~~L~~~s~gdlr~a~~~L 223 (451)
T PRK06305 154 FFLATTEIHKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEGI---ETSREALLPIARAAQGSLRDAESLY 223 (451)
T ss_pred EEEEeCChHhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 776664331 112337899999999998888876543221 1246778999999999764 44443
No 109
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.04 E-value=0.0001 Score=82.16 Aligned_cols=191 Identities=14% Similarity=0.135 Sum_probs=103.5
Q ss_pred CCCCCCCcchHHHHHHHHHcCCc-eEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEE-eCCCCCHHHHHHHHHHh
Q 042541 165 PVISPGLDVPLKELKMELFKDGR-QFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVT-VSKNPNVKAIVQKVLHH 242 (695)
Q Consensus 165 ~~~~vGr~~~~~~l~~~L~~~~~-~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~-~~~~~~~~~~~~~i~~~ 242 (695)
-..+||-+..++.|...+..+.. ..+.++|+.|+||||+|+.+++.---....+. ..|.. +...+..-...+.+...
T Consensus 15 f~eivGQe~i~~~L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~-~~~~~~~~~~Cg~C~sC~~~~~g 93 (620)
T PRK14954 15 FADITAQEHITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDD-PVYLQEVTEPCGECESCRDFDAG 93 (620)
T ss_pred HHHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCc-cccccccCCCCccCHHHHHHhcc
Confidence 35679999999999888887665 45889999999999999988763111111110 00110 00000000111111110
Q ss_pred cCCCCCCCCC-hHHHHHHHHHHHHh-----cCCCcEEEEEeCCCCCChH----HHhhhccCCCCCEEEEEcCCCC-----
Q 042541 243 KGYPVPEFQT-DEAAINDLERFFKQ-----MRIEAILLVLDDVWPGSES----LLQKLGFQLPDYKILVTSRSEF----- 307 (695)
Q Consensus 243 l~~~~~~~~~-~~~~~~~l~~~~~~-----l~~~~~LlVlDdv~~~~~~----~~~~l~~~~~gs~iivTtR~~~----- 307 (695)
-......... .....+.++.+.+. ..+.+-++|+|+++..... ++..+....+.+.+|++|....
T Consensus 94 ~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~~kLl~T 173 (620)
T PRK14954 94 TSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELHKIPAT 173 (620)
T ss_pred CCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhhHH
Confidence 0000000000 00012222222222 2356668999999776542 4444444444566665554331
Q ss_pred -CCCCCeEecCCCChHHHHHHHHHhccCCCCCCCCCchHHHHHHHHhcCCchh
Q 042541 308 -PQFGSVHYLKPLTYEAARTLFLHSANLQDGNSYIPDENIVSKILRACKGCPL 359 (695)
Q Consensus 308 -~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PL 359 (695)
...+..+++.+++.++....+.+.+..... .-..+.+..|++.++|..-
T Consensus 174 I~SRc~~vef~~l~~~ei~~~L~~i~~~egi---~I~~eal~~La~~s~Gdlr 223 (620)
T PRK14954 174 IASRCQRFNFKRIPLDEIQSQLQMICRAEGI---QIDADALQLIARKAQGSMR 223 (620)
T ss_pred HHhhceEEecCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHhCCCHH
Confidence 122348999999999988888776543221 1246778999999999654
No 110
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.04 E-value=0.00021 Score=80.15 Aligned_cols=171 Identities=14% Similarity=0.144 Sum_probs=104.4
Q ss_pred CCCCCCcchHHHHHHHHHcCCc-eEEEEEcCCCCcHHHHHHHHhccccc---------------------cccCCCcEEE
Q 042541 166 VISPGLDVPLKELKMELFKDGR-QFIVVSAPGGYGKTTLVQRLCKDDQV---------------------QGKFKDDIFY 223 (695)
Q Consensus 166 ~~~vGr~~~~~~l~~~L~~~~~-~vv~I~G~gGiGKTtLa~~~~~~~~~---------------------~~~f~~~~~w 223 (695)
+.++|-+..++.|..++..+.. ..+.++|+.|+||||+|+.+....-- ..+|+ +..
T Consensus 17 ~~viGq~~~~~~L~~~i~~~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n--~~~ 94 (614)
T PRK14971 17 ESVVGQEALTTTLKNAIATNKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYN--IHE 94 (614)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCc--eEE
Confidence 4679999999999999987664 55889999999999999887763110 01222 223
Q ss_pred EEeCCCCCHHHHHHHHHHhcCCCCCCCCChHHHHHHHHHHHHhcCCCcEEEEEeCCCCCChH----HHhhhccCCCCCEE
Q 042541 224 VTVSKNPNVKAIVQKVLHHKGYPVPEFQTDEAAINDLERFFKQMRIEAILLVLDDVWPGSES----LLQKLGFQLPDYKI 299 (695)
Q Consensus 224 v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~~~LlVlDdv~~~~~~----~~~~l~~~~~gs~i 299 (695)
++.+......++ +.++.++... -..+++-++|+|++...... ++..+.....++.+
T Consensus 95 ld~~~~~~vd~I-r~li~~~~~~-------------------P~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~tif 154 (614)
T PRK14971 95 LDAASNNSVDDI-RNLIEQVRIP-------------------PQIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIF 154 (614)
T ss_pred ecccccCCHHHH-HHHHHHHhhC-------------------cccCCcEEEEEECcccCCHHHHHHHHHHHhCCCCCeEE
Confidence 332222222211 1111211110 11245668899999776643 34444444455666
Q ss_pred EEEcCCCC------CCCCCeEecCCCChHHHHHHHHHhccCCCCCCCCCchHHHHHHHHhcCCchhHH
Q 042541 300 LVTSRSEF------PQFGSVHYLKPLTYEAARTLFLHSANLQDGNSYIPDENIVSKILRACKGCPLAL 361 (695)
Q Consensus 300 ivTtR~~~------~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai 361 (695)
|++|.... ..-+..+++.+++.++....+.+.+...+. .-..+.+..|++.++|-..-+
T Consensus 155 IL~tt~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~egi---~i~~~al~~La~~s~gdlr~a 219 (614)
T PRK14971 155 ILATTEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGI---TAEPEALNVIAQKADGGMRDA 219 (614)
T ss_pred EEEeCCchhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHH
Confidence 66554331 122348999999999999988876644322 123567899999999976543
No 111
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.03 E-value=5.7e-05 Score=80.00 Aligned_cols=165 Identities=15% Similarity=0.201 Sum_probs=97.5
Q ss_pred CCCCCCCcchHHHHHHHHHc-------------CCceEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCCCCC
Q 042541 165 PVISPGLDVPLKELKMELFK-------------DGRQFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSKNPN 231 (695)
Q Consensus 165 ~~~~vGr~~~~~~l~~~L~~-------------~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~~~~ 231 (695)
.+.+.|++..+++|.+.+.. ..++-+.|+|++|+|||++|+.+++ .....| +.+..
T Consensus 121 ~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~--~l~~~~------~~v~~--- 189 (364)
T TIGR01242 121 YEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAH--ETNATF------IRVVG--- 189 (364)
T ss_pred HHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHH--hCCCCE------Eecch---
Confidence 34679999999999887751 1245689999999999999999998 343332 22221
Q ss_pred HHHHHHHHHHhcCCCCCCCCChHHHHHHHHHHHHh-cCCCcEEEEEeCCCCCC-----------hH-------HHhhhcc
Q 042541 232 VKAIVQKVLHHKGYPVPEFQTDEAAINDLERFFKQ-MRIEAILLVLDDVWPGS-----------ES-------LLQKLGF 292 (695)
Q Consensus 232 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~~-l~~~~~LlVlDdv~~~~-----------~~-------~~~~l~~ 292 (695)
..+.... ++ .....+...++. -...+.+|++||++... .. ++..+..
T Consensus 190 -~~l~~~~---~g----------~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~ 255 (364)
T TIGR01242 190 -SELVRKY---IG----------EGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDG 255 (364)
T ss_pred -HHHHHHh---hh----------HHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhC
Confidence 1111111 11 111223333322 23567899999986431 00 1111111
Q ss_pred --CCCCCEEEEEcCCCC------C---CCCCeEecCCCChHHHHHHHHHhccCCCCCCCCCchHHHHHHHHhcCCch
Q 042541 293 --QLPDYKILVTSRSEF------P---QFGSVHYLKPLTYEAARTLFLHSANLQDGNSYIPDENIVSKILRACKGCP 358 (695)
Q Consensus 293 --~~~gs~iivTtR~~~------~---~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~G~P 358 (695)
...+..||.||.... . .....+.++..+.++..++|...+........ .....+++.+.|..
T Consensus 256 ~~~~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~----~~~~~la~~t~g~s 328 (364)
T TIGR01242 256 FDPRGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAED----VDLEAIAKMTEGAS 328 (364)
T ss_pred CCCCCCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCcc----CCHHHHHHHcCCCC
Confidence 123567888887541 1 22347889999999999999987644332111 12567888887764
No 112
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=98.03 E-value=6.6e-05 Score=78.14 Aligned_cols=139 Identities=17% Similarity=0.175 Sum_probs=83.5
Q ss_pred CCCCCCCCCcchHHHHHHHHHcCC-ceEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCCCCCHHHHHHHHHH
Q 042541 163 DPPVISPGLDVPLKELKMELFKDG-RQFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSKNPNVKAIVQKVLH 241 (695)
Q Consensus 163 ~~~~~~vGr~~~~~~l~~~L~~~~-~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~~~~~~~~~~~i~~ 241 (695)
..-+.++|.+...+.+..++..+. ..++.++|++|+||||+|+.+++. ... .+..++.+. .... ..+..
T Consensus 18 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~lll~G~~G~GKT~la~~l~~~--~~~----~~~~i~~~~-~~~~-~i~~~-- 87 (316)
T PHA02544 18 STIDECILPAADKETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCNE--VGA----EVLFVNGSD-CRID-FVRNR-- 87 (316)
T ss_pred CcHHHhcCcHHHHHHHHHHHhcCCCCeEEEeeCcCCCCHHHHHHHHHHH--hCc----cceEeccCc-ccHH-HHHHH--
Confidence 334567999999999999988665 467777999999999999999873 221 234555544 2211 11111
Q ss_pred hcCCCCCCCCChHHHHHHHHHHHHh--cCCCcEEEEEeCCCCC-ChH---HHhh-hccCCCCCEEEEEcCCCCC------
Q 042541 242 HKGYPVPEFQTDEAAINDLERFFKQ--MRIEAILLVLDDVWPG-SES---LLQK-LGFQLPDYKILVTSRSEFP------ 308 (695)
Q Consensus 242 ~l~~~~~~~~~~~~~~~~l~~~~~~--l~~~~~LlVlDdv~~~-~~~---~~~~-l~~~~~gs~iivTtR~~~~------ 308 (695)
+...... ..+.+-++|+||+... ... .+.. +.....++.+|+||.....
T Consensus 88 ------------------l~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~ 149 (316)
T PHA02544 88 ------------------LTRFASTVSLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLR 149 (316)
T ss_pred ------------------HHHHHHhhcccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHH
Confidence 1111111 1245668999999765 221 2222 3333456788888865421
Q ss_pred CCCCeEecCCCChHHHHHHHH
Q 042541 309 QFGSVHYLKPLTYEAARTLFL 329 (695)
Q Consensus 309 ~~~~~~~l~~L~~~ea~~Lf~ 329 (695)
.....+.++..+.++..+++.
T Consensus 150 sR~~~i~~~~p~~~~~~~il~ 170 (316)
T PHA02544 150 SRCRVIDFGVPTKEEQIEMMK 170 (316)
T ss_pred hhceEEEeCCCCHHHHHHHHH
Confidence 112256777777777766554
No 113
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=98.00 E-value=0.00092 Score=72.01 Aligned_cols=175 Identities=14% Similarity=0.179 Sum_probs=101.8
Q ss_pred CCCCCCCcchH--HHHHHHHHcCC--ceEEEEEcCCCCcHHHHHHHHhccccccccC-CCcEEEEEeCCCCCHHHHHHHH
Q 042541 165 PVISPGLDVPL--KELKMELFKDG--RQFIVVSAPGGYGKTTLVQRLCKDDQVQGKF-KDDIFYVTVSKNPNVKAIVQKV 239 (695)
Q Consensus 165 ~~~~vGr~~~~--~~l~~~L~~~~--~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f-~~~~~wv~~~~~~~~~~~~~~i 239 (695)
..+++|..... ..+..+...++ ...+.|+|+.|+|||.|++++++ .+.... ...++|++. .++...+
T Consensus 110 d~fi~g~~n~~a~~~~~~~~~~~~~~~n~l~l~G~~G~GKThL~~ai~~--~l~~~~~~~~v~yi~~------~~~~~~~ 181 (405)
T TIGR00362 110 DNFVVGKSNRLAHAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGN--EILENNPNAKVVYVSS------EKFTNDF 181 (405)
T ss_pred cccccCCcHHHHHHHHHHHHhCcCccCCeEEEECCCCCcHHHHHHHHHH--HHHHhCCCCcEEEEEH------HHHHHHH
Confidence 34566755542 22222222222 34689999999999999999998 443333 344667653 3344455
Q ss_pred HHhcCCCCCCCCChHHHHHHHHHHHHhcCCCcEEEEEeCCCCCCh------HHHhhhcc-CCCCCEEEEEcCCCCC----
Q 042541 240 LHHKGYPVPEFQTDEAAINDLERFFKQMRIEAILLVLDDVWPGSE------SLLQKLGF-QLPDYKILVTSRSEFP---- 308 (695)
Q Consensus 240 ~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~~~LlVlDdv~~~~~------~~~~~l~~-~~~gs~iivTtR~~~~---- 308 (695)
...+... . ...+...+ ++ .-+|+|||+..... .+...+.. ...|..+|+||.....
T Consensus 182 ~~~~~~~-----~----~~~~~~~~---~~-~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~ 248 (405)
T TIGR00362 182 VNALRNN-----K----MEEFKEKY---RS-VDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPG 248 (405)
T ss_pred HHHHHcC-----C----HHHHHHHH---Hh-CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhh
Confidence 5554321 1 11222222 22 34899999964321 12222211 1235678888865310
Q ss_pred ---------CCCCeEecCCCChHHHHHHHHHhccCCCCCCCCCchHHHHHHHHhcCCchhHHHH
Q 042541 309 ---------QFGSVHYLKPLTYEAARTLFLHSANLQDGNSYIPDENIVSKILRACKGCPLALKV 363 (695)
Q Consensus 309 ---------~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~ 363 (695)
..+..+.+++.+.++-..++.+.+..... .-.+++...|++.+.|..-.+.-
T Consensus 249 l~~~l~SRl~~g~~v~i~~pd~~~r~~il~~~~~~~~~---~l~~e~l~~ia~~~~~~~r~l~~ 309 (405)
T TIGR00362 249 LEERLRSRFEWGLVVDIEPPDLETRLAILQKKAEEEGL---ELPDEVLEFIAKNIRSNVRELEG 309 (405)
T ss_pred hhhhhhhhccCCeEEEeCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHhcCCCHHHHHH
Confidence 11347899999999999999988754322 12367889999999987765443
No 114
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.00 E-value=1.4e-06 Score=84.19 Aligned_cols=107 Identities=14% Similarity=0.188 Sum_probs=83.8
Q ss_pred hhcCCCCCcEEEEcccCCCCcccCcccccccCCCCcEEEeccCCCCCcccccccccccEEeeccccCCcccccchhhhcc
Q 042541 569 FLQKMDELKVLIVTNYGFSPAELNNFRVLSALSKLKKIRLEHVSLPNSLATVRMNHLQKVSLVMCNVGQVFRNSTFRISD 648 (695)
Q Consensus 569 ~~~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~lp~i~~l~~L~~L~l~~~~i~~~~~~~~~~l~~ 648 (695)
.+.-.+.|..+||++|.+..-. .+..-++.++.|++++|++..+..+..|++|+.|||++|.++.+.. .-.
T Consensus 279 ~~dTWq~LtelDLS~N~I~~iD----ESvKL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~Ls~~~G-wh~---- 349 (490)
T KOG1259|consen 279 SADTWQELTELDLSGNLITQID----ESVKLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNLLAECVG-WHL---- 349 (490)
T ss_pred ecchHhhhhhccccccchhhhh----hhhhhccceeEEeccccceeeehhhhhcccceEeecccchhHhhhh-hHh----
Confidence 3445678999999998664211 2245678899999999999876667789999999999998776433 222
Q ss_pred cCCCccEEecccccccccCchhhcCCCCCceeeccccc
Q 042541 649 AFPNLLEMDIDYCNDLIELPDGLCDIVSMEKLRITNCH 686 (695)
Q Consensus 649 ~l~~L~~L~l~~c~~l~~lP~~i~~L~~L~~L~l~~~~ 686 (695)
+|-|.++|.|+.| .+..+ +++++|-+|..||+++|+
T Consensus 350 KLGNIKtL~La~N-~iE~L-SGL~KLYSLvnLDl~~N~ 385 (490)
T KOG1259|consen 350 KLGNIKTLKLAQN-KIETL-SGLRKLYSLVNLDLSSNQ 385 (490)
T ss_pred hhcCEeeeehhhh-hHhhh-hhhHhhhhheeccccccc
Confidence 7999999999984 56666 579999999999999975
No 115
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.99 E-value=7.5e-06 Score=56.79 Aligned_cols=39 Identities=10% Similarity=0.227 Sum_probs=27.7
Q ss_pred CCCcEEEeccCCCCCcc-cccccccccEEeeccccCCccc
Q 042541 601 SKLKKIRLEHVSLPNSL-ATVRMNHLQKVSLVMCNVGQVF 639 (695)
Q Consensus 601 ~~L~~L~L~~~~l~~lp-~i~~l~~L~~L~l~~~~i~~~~ 639 (695)
++|++|++++|.|+.+| .+++|++|++|++++|+++.++
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence 35777888888887777 5778888888888888776543
No 116
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=97.99 E-value=1.3e-06 Score=88.77 Aligned_cols=131 Identities=18% Similarity=0.230 Sum_probs=70.4
Q ss_pred CCCceEEEEEEccCccccCCh-hhcCCCCCcEEEEcccCCCCcccCcccccccCCCCcEEEeccCC-CCCcc-ccccccc
Q 042541 548 QGPEVKVVVLNIRTKKYVLPD-FLQKMDELKVLIVTNYGFSPAELNNFRVLSALSKLKKIRLEHVS-LPNSL-ATVRMNH 624 (695)
Q Consensus 548 ~~~~l~~L~l~~~~~~~~~p~-~~~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~-l~~lp-~i~~l~~ 624 (695)
.+|+|+.|.++.|........ .-..+++|+.|.|+.|+++...+... +-.+++|..|.|.+|. +..-- +...++.
T Consensus 170 qLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~--~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~ 247 (505)
T KOG3207|consen 170 QLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWI--LLTFPSLEVLYLEANEIILIKATSTKILQT 247 (505)
T ss_pred hcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHH--HHhCCcHHHhhhhcccccceecchhhhhhH
Confidence 456666666655532211111 11235566666666666643322211 4456666677776663 22111 3445667
Q ss_pred ccEEeeccccCCcccc--cchhhhcccCCCccEEeccccccccc--Cchh-----hcCCCCCceeeccccc
Q 042541 625 LQKVSLVMCNVGQVFR--NSTFRISDAFPNLLEMDIDYCNDLIE--LPDG-----LCDIVSMEKLRITNCH 686 (695)
Q Consensus 625 L~~L~l~~~~i~~~~~--~~~~~l~~~l~~L~~L~l~~c~~l~~--lP~~-----i~~L~~L~~L~l~~~~ 686 (695)
|+.|||++|.+...+. ... .|+.|..|+++.|. +.+ +|+. .-.+++|+.|++..|+
T Consensus 248 L~~LdLs~N~li~~~~~~~~~-----~l~~L~~Lnls~tg-i~si~~~d~~s~~kt~~f~kL~~L~i~~N~ 312 (505)
T KOG3207|consen 248 LQELDLSNNNLIDFDQGYKVG-----TLPGLNQLNLSSTG-IASIAEPDVESLDKTHTFPKLEYLNISENN 312 (505)
T ss_pred HhhccccCCcccccccccccc-----cccchhhhhccccC-cchhcCCCccchhhhcccccceeeecccCc
Confidence 7777777776655542 222 57777777777653 332 2332 3456778888887765
No 117
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.98 E-value=7.1e-05 Score=87.15 Aligned_cols=175 Identities=11% Similarity=0.083 Sum_probs=100.9
Q ss_pred CCCCCCCcchHHHHHHHHHcCCceEEEEEcCCCCcHHHHHHHHhcccccccc------CCCcEEEEEeCCCCCHHHHHHH
Q 042541 165 PVISPGLDVPLKELKMELFKDGRQFIVVSAPGGYGKTTLVQRLCKDDQVQGK------FKDDIFYVTVSKNPNVKAIVQK 238 (695)
Q Consensus 165 ~~~~vGr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~------f~~~~~wv~~~~~~~~~~~~~~ 238 (695)
-+.+|||+.++.++++.|......-+.++|++|+||||+|+.+++ ++... ....++.++++.-.
T Consensus 186 ld~~iGr~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~~~La~--~i~~~~v~~~l~~~~i~~l~l~~l~-------- 255 (852)
T TIGR03345 186 IDPVLGRDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVVEGLAL--RIAAGDVPPALRNVRLLSLDLGLLQ-------- 255 (852)
T ss_pred CCcccCCHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHHHHHHH--HHhhCCCCccccCCeEEEeehhhhh--------
Confidence 356799999999999999866656677999999999999999987 33221 12223333333210
Q ss_pred HHHhcCCCCCCCCChHHHHHHHHHHHHhc--CCCcEEEEEeCCCCCC--------hHHHhhhccC-CCC-CEEEEEcCCC
Q 042541 239 VLHHKGYPVPEFQTDEAAINDLERFFKQM--RIEAILLVLDDVWPGS--------ESLLQKLGFQ-LPD-YKILVTSRSE 306 (695)
Q Consensus 239 i~~~l~~~~~~~~~~~~~~~~l~~~~~~l--~~~~~LlVlDdv~~~~--------~~~~~~l~~~-~~g-s~iivTtR~~ 306 (695)
. ......+...+++.+++.+ .+++.+|++|++.... ......+.+. ..| -++|-||...
T Consensus 256 -----a----g~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~~G~l~~IgaTT~~ 326 (852)
T TIGR03345 256 -----A----GASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALARGELRTIAATTWA 326 (852)
T ss_pred -----c----ccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHhhCCCeEEEEecCHH
Confidence 0 0011223335555666433 2578999999985432 1111112221 123 4555555431
Q ss_pred ----CCC-------CCCeEecCCCChHHHHHHHHHhccCCCCCCC-CCchHHHHHHHHhcCCch
Q 042541 307 ----FPQ-------FGSVHYLKPLTYEAARTLFLHSANLQDGNSY-IPDENIVSKILRACKGCP 358 (695)
Q Consensus 307 ----~~~-------~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~-~~~~~~~~~I~~~c~G~P 358 (695)
... --..+.+++++.+++.+++......-..... .-..+....+++.+.++.
T Consensus 327 e~~~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ryi 390 (852)
T TIGR03345 327 EYKKYFEKDPALTRRFQVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRYI 390 (852)
T ss_pred HHhhhhhccHHHHHhCeEEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHccccc
Confidence 110 1128999999999999997544321111111 113566777888776654
No 118
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=97.98 E-value=7.7e-07 Score=93.24 Aligned_cols=130 Identities=18% Similarity=0.305 Sum_probs=103.1
Q ss_pred eEEEEEEccCccccCChhhcCCCCCcEEEEcccCCCCcccCcccccccCCCCcEEEeccCCCCCcc-cccccccccEEee
Q 042541 552 VKVVVLNIRTKKYVLPDFLQKMDELKVLIVTNYGFSPAELNNFRVLSALSKLKKIRLEHVSLPNSL-ATVRMNHLQKVSL 630 (695)
Q Consensus 552 l~~L~l~~~~~~~~~p~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~lp-~i~~l~~L~~L~l 630 (695)
|+.+.|..+ ....+|+.+.++..|.+|+|+.|.++. ++ ..++.|+ |+.|-+++|+++.+| .++.+.+|..||.
T Consensus 100 Le~liLy~n-~~r~ip~~i~~L~~lt~l~ls~NqlS~--lp--~~lC~lp-Lkvli~sNNkl~~lp~~ig~~~tl~~ld~ 173 (722)
T KOG0532|consen 100 LESLILYHN-CIRTIPEAICNLEALTFLDLSSNQLSH--LP--DGLCDLP-LKVLIVSNNKLTSLPEEIGLLPTLAHLDV 173 (722)
T ss_pred HHHHHHHhc-cceecchhhhhhhHHHHhhhccchhhc--CC--hhhhcCc-ceeEEEecCccccCCcccccchhHHHhhh
Confidence 344444333 345678889999999999999886631 11 1245555 999999999999999 9999999999999
Q ss_pred ccccCCcccccchhhhcccCCCccEEecccccccccCchhhcCCCCCceeecccccCCCCCCCCC
Q 042541 631 VMCNVGQVFRNSTFRISDAFPNLLEMDIDYCNDLIELPDGLCDIVSMEKLRITNCHRLSALPEGI 695 (695)
Q Consensus 631 ~~~~i~~~~~~~~~~l~~~l~~L~~L~l~~c~~l~~lP~~i~~L~~L~~L~l~~~~~l~~lP~~i 695 (695)
+.|.+..+|+... +|.+|+.|.++. +++..+|..++.| .|..||++. |++..||-.|
T Consensus 174 s~nei~slpsql~-----~l~slr~l~vrR-n~l~~lp~El~~L-pLi~lDfSc-Nkis~iPv~f 230 (722)
T KOG0532|consen 174 SKNEIQSLPSQLG-----YLTSLRDLNVRR-NHLEDLPEELCSL-PLIRLDFSC-NKISYLPVDF 230 (722)
T ss_pred hhhhhhhchHHhh-----hHHHHHHHHHhh-hhhhhCCHHHhCC-ceeeeeccc-Cceeecchhh
Confidence 9999999888777 899999999998 4688999999854 688999986 6699998653
No 119
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=97.96 E-value=0.00041 Score=77.13 Aligned_cols=187 Identities=16% Similarity=0.101 Sum_probs=103.8
Q ss_pred CCCCCCCCcchHHHHHHHHHcCC-ceEEEEEcCCCCcHHHHHHHHhccccccc-cCCCcEEEEEeCCCCCHHHHHHHHHH
Q 042541 164 PPVISPGLDVPLKELKMELFKDG-RQFIVVSAPGGYGKTTLVQRLCKDDQVQG-KFKDDIFYVTVSKNPNVKAIVQKVLH 241 (695)
Q Consensus 164 ~~~~~vGr~~~~~~l~~~L~~~~-~~vv~I~G~gGiGKTtLa~~~~~~~~~~~-~f~~~~~wv~~~~~~~~~~~~~~i~~ 241 (695)
.-+.++|.+..++.+..++..+. ...+.++|+.|+||||+|+.+... +.. +-..+. .++.+ .....+..
T Consensus 14 ~f~~viGq~~v~~~L~~~i~~~~~~hayLf~Gp~GtGKTt~Ak~lAka--l~c~~~~~~~---pC~~C----~~C~~i~~ 84 (559)
T PRK05563 14 TFEDVVGQEHITKTLKNAIKQGKISHAYLFSGPRGTGKTSAAKIFAKA--VNCLNPPDGE---PCNEC----EICKAITN 84 (559)
T ss_pred cHHhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHH--hcCCCCCCCC---CCCcc----HHHHHHhc
Confidence 34567999999999999998665 455778999999999999988762 210 000000 00111 11111111
Q ss_pred hcCCCC----CCCCChHHHHHHHHHHHHh--cCCCcEEEEEeCCCCCChH----HHhhhccCCCCCEEEEEcCCCCC---
Q 042541 242 HKGYPV----PEFQTDEAAINDLERFFKQ--MRIEAILLVLDDVWPGSES----LLQKLGFQLPDYKILVTSRSEFP--- 308 (695)
Q Consensus 242 ~l~~~~----~~~~~~~~~~~~l~~~~~~--l~~~~~LlVlDdv~~~~~~----~~~~l~~~~~gs~iivTtR~~~~--- 308 (695)
...... .......+.+..+...... ..++.-++|+|++...... ++..+....+.+.+|++|.....
T Consensus 85 g~~~dv~eidaas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~ki~~ 164 (559)
T PRK05563 85 GSLMDVIEIDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHKIPA 164 (559)
T ss_pred CCCCCeEEeeccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChhhCcH
Confidence 100000 0000111112222222211 2466779999999876543 44444444345566655543311
Q ss_pred ---CCCCeEecCCCChHHHHHHHHHhccCCCCCCCCCchHHHHHHHHhcCCchhHHH
Q 042541 309 ---QFGSVHYLKPLTYEAARTLFLHSANLQDGNSYIPDENIVSKILRACKGCPLALK 362 (695)
Q Consensus 309 ---~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~ 362 (695)
.-...+...+++.++....+...+...+. .-..+.+..|++.++|.+.-+.
T Consensus 165 tI~SRc~~~~f~~~~~~ei~~~L~~i~~~egi---~i~~~al~~ia~~s~G~~R~al 218 (559)
T PRK05563 165 TILSRCQRFDFKRISVEDIVERLKYILDKEGI---EYEDEALRLIARAAEGGMRDAL 218 (559)
T ss_pred HHHhHheEEecCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHH
Confidence 11226888999999998888876643322 1135678889999999875443
No 120
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=97.96 E-value=0.0011 Score=68.23 Aligned_cols=189 Identities=15% Similarity=0.175 Sum_probs=108.9
Q ss_pred CCCCCcchHHHHHHHHHcCC-ceEEEEEcCCCCcHHHHHHHHhccc---c---------c-cccCCCcEEEEEeCCCCCH
Q 042541 167 ISPGLDVPLKELKMELFKDG-RQFIVVSAPGGYGKTTLVQRLCKDD---Q---------V-QGKFKDDIFYVTVSKNPNV 232 (695)
Q Consensus 167 ~~vGr~~~~~~l~~~L~~~~-~~vv~I~G~gGiGKTtLa~~~~~~~---~---------~-~~~f~~~~~wv~~~~~~~~ 232 (695)
.++|-+..++.+...+..+. .....++|+.|+||+++|..+++.- . + ...++. +.|+.-.....-
T Consensus 5 ~iiGq~~~~~~L~~~i~~~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPD-l~~i~p~~~~~g 83 (314)
T PRK07399 5 NLIGQPLAIELLTAAIKQNRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPD-LLWVEPTYQHQG 83 (314)
T ss_pred HhCCHHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCC-EEEEeccccccc
Confidence 46899999999999998776 4789999999999999998876521 0 0 122333 445542110000
Q ss_pred HHHHHHHHHhcCC--CCCCCCChHHHHHHHHHHH--HhcCCCcEEEEEeCCCCCChH----HHhhhccCCCCCEEEEEcC
Q 042541 233 KAIVQKVLHHKGY--PVPEFQTDEAAINDLERFF--KQMRIEAILLVLDDVWPGSES----LLQKLGFQLPDYKILVTSR 304 (695)
Q Consensus 233 ~~~~~~i~~~l~~--~~~~~~~~~~~~~~l~~~~--~~l~~~~~LlVlDdv~~~~~~----~~~~l~~~~~gs~iivTtR 304 (695)
..+-..-+...+. ..... -..+.+..+.+.+ ....+++-++|+|++...... +++.+.... .+.+|++|.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~-I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp-~~~fILi~~ 161 (314)
T PRK07399 84 KLITASEAEEAGLKRKAPPQ-IRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPG-NGTLILIAP 161 (314)
T ss_pred cccchhhhhhcccccccccc-CcHHHHHHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCC-CCeEEEEEC
Confidence 0000011111110 00000 0111223333333 123477889999999776643 455554444 556666665
Q ss_pred CCCC------CCCCeEecCCCChHHHHHHHHHhccCCCCCCCCCchHHHHHHHHhcCCchhHHHHH
Q 042541 305 SEFP------QFGSVHYLKPLTYEAARTLFLHSANLQDGNSYIPDENIVSKILRACKGCPLALKVV 364 (695)
Q Consensus 305 ~~~~------~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~ 364 (695)
+... .-...+++.+++.++..+.+.+...... .......++..++|.|..+..+
T Consensus 162 ~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~~------~~~~~~~l~~~a~Gs~~~al~~ 221 (314)
T PRK07399 162 SPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEEI------LNINFPELLALAQGSPGAAIAN 221 (314)
T ss_pred ChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhcccc------chhHHHHHHHHcCCCHHHHHHH
Confidence 4421 1223899999999999999987642111 1112468899999999765543
No 121
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.94 E-value=0.00022 Score=77.07 Aligned_cols=176 Identities=17% Similarity=0.185 Sum_probs=105.1
Q ss_pred CCCCCCCcchH--HHHHHHHHcCC-ceEEEEEcCCCCcHHHHHHHHhcccccccc-CCCcEEEEEeCCCCCHHHHHHHHH
Q 042541 165 PVISPGLDVPL--KELKMELFKDG-RQFIVVSAPGGYGKTTLVQRLCKDDQVQGK-FKDDIFYVTVSKNPNVKAIVQKVL 240 (695)
Q Consensus 165 ~~~~vGr~~~~--~~l~~~L~~~~-~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~-f~~~~~wv~~~~~~~~~~~~~~i~ 240 (695)
+.+++|-.... ....++..+++ ..-+.|+|++|+|||+|++.+++ .+... ....++|++. .++...+.
T Consensus 105 dnFv~g~~n~~a~~~~~~~~~~~~~~n~l~lyG~~G~GKTHLl~ai~~--~l~~~~~~~~v~yi~~------~~f~~~~~ 176 (440)
T PRK14088 105 ENFVVGPGNSFAYHAALEVAKNPGRYNPLFIYGGVGLGKTHLLQSIGN--YVVQNEPDLRVMYITS------EKFLNDLV 176 (440)
T ss_pred cccccCCchHHHHHHHHHHHhCcCCCCeEEEEcCCCCcHHHHHHHHHH--HHHHhCCCCeEEEEEH------HHHHHHHH
Confidence 34556744432 23333333332 34599999999999999999998 44433 3445677754 34566666
Q ss_pred HhcCCCCCCCCChHHHHHHHHHHHHhcCCCcEEEEEeCCCCCC------hHHHhhhcc-CCCCCEEEEEcCCCC------
Q 042541 241 HHKGYPVPEFQTDEAAINDLERFFKQMRIEAILLVLDDVWPGS------ESLLQKLGF-QLPDYKILVTSRSEF------ 307 (695)
Q Consensus 241 ~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~~~LlVlDdv~~~~------~~~~~~l~~-~~~gs~iivTtR~~~------ 307 (695)
..+... . ...+. +.++.+.-+|++||+.... ..+...+.. ...|..||+||....
T Consensus 177 ~~~~~~-----~----~~~f~---~~~~~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l 244 (440)
T PRK14088 177 DSMKEG-----K----LNEFR---EKYRKKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEF 244 (440)
T ss_pred HHHhcc-----c----HHHHH---HHHHhcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHH
Confidence 655321 1 11122 2223345689999997432 112222211 123567888886431
Q ss_pred -------CCCCCeEecCCCChHHHHHHHHHhccCCCCCCCCCchHHHHHHHHhcCCchhHHHH
Q 042541 308 -------PQFGSVHYLKPLTYEAARTLFLHSANLQDGNSYIPDENIVSKILRACKGCPLALKV 363 (695)
Q Consensus 308 -------~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~ 363 (695)
...|..+.+++.+.+.-.+++.+.+..... .-.+++...|++.+.|.-..+.-
T Consensus 245 ~~rL~SR~~~gl~v~i~~pd~e~r~~IL~~~~~~~~~---~l~~ev~~~Ia~~~~~~~R~L~g 304 (440)
T PRK14088 245 QDRLVSRFQMGLVAKLEPPDEETRKKIARKMLEIEHG---ELPEEVLNFVAENVDDNLRRLRG 304 (440)
T ss_pred HHHHhhHHhcCceEeeCCCCHHHHHHHHHHHHHhcCC---CCCHHHHHHHHhccccCHHHHHH
Confidence 123448899999999999999888754322 12367899999999887554443
No 122
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=97.93 E-value=0.00029 Score=78.07 Aligned_cols=185 Identities=12% Similarity=0.099 Sum_probs=106.1
Q ss_pred CCCCCCCcchHHHHHHHHHcCCc-eEEEEEcCCCCcHHHHHHHHhccccccc---cCCCcEEEEEeCCCCCHHHHHHHHH
Q 042541 165 PVISPGLDVPLKELKMELFKDGR-QFIVVSAPGGYGKTTLVQRLCKDDQVQG---KFKDDIFYVTVSKNPNVKAIVQKVL 240 (695)
Q Consensus 165 ~~~~vGr~~~~~~l~~~L~~~~~-~vv~I~G~gGiGKTtLa~~~~~~~~~~~---~f~~~~~wv~~~~~~~~~~~~~~i~ 240 (695)
-..++|-+..++.|..++..+.. ..+.++|+.|+||||+|+.+++.---.. .++| ..+.+-.. +.
T Consensus 15 f~diiGqe~iv~~L~~~i~~~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC-------~~C~~C~~----i~ 83 (563)
T PRK06647 15 FNSLEGQDFVVETLKHSIESNKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPC-------GECSSCKS----ID 83 (563)
T ss_pred HHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCC-------ccchHHHH----HH
Confidence 34679999999999999987654 5688999999999999999987311110 1111 11111111 11
Q ss_pred HhcCCC---CCCC-CChHHHHHHHHHHH--HhcCCCcEEEEEeCCCCCChH----HHhhhccCCCCCEEEEEcCCCC---
Q 042541 241 HHKGYP---VPEF-QTDEAAINDLERFF--KQMRIEAILLVLDDVWPGSES----LLQKLGFQLPDYKILVTSRSEF--- 307 (695)
Q Consensus 241 ~~l~~~---~~~~-~~~~~~~~~l~~~~--~~l~~~~~LlVlDdv~~~~~~----~~~~l~~~~~gs~iivTtR~~~--- 307 (695)
..-... ..+. ...-+.+..+.+.. .-..+++-++|+|++...... ++..+....+.+.+|++|....
T Consensus 84 ~~~~~dv~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~kL~ 163 (563)
T PRK06647 84 NDNSLDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKLP 163 (563)
T ss_pred cCCCCCeEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChHHhH
Confidence 000000 0000 01111112222111 112466778999999776643 3444444445567766664331
Q ss_pred ---CCCCCeEecCCCChHHHHHHHHHhccCCCCCCCCCchHHHHHHHHhcCCchhHHHH
Q 042541 308 ---PQFGSVHYLKPLTYEAARTLFLHSANLQDGNSYIPDENIVSKILRACKGCPLALKV 363 (695)
Q Consensus 308 ---~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~ 363 (695)
..-...++..+++.++-...+...+..... .-.++.+..|++.++|.+..+..
T Consensus 164 ~tI~SRc~~~~f~~l~~~el~~~L~~i~~~egi---~id~eAl~lLa~~s~GdlR~als 219 (563)
T PRK06647 164 ATIKSRCQHFNFRLLSLEKIYNMLKKVCLEDQI---KYEDEALKWIAYKSTGSVRDAYT 219 (563)
T ss_pred HHHHHhceEEEecCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHHH
Confidence 111236899999999998888876643322 12467788899999998854443
No 123
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=97.93 E-value=8.3e-05 Score=79.15 Aligned_cols=164 Identities=12% Similarity=0.123 Sum_probs=95.1
Q ss_pred CCCCCCCcchHHHHHHHHHc-------------CCceEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCCCCC
Q 042541 165 PVISPGLDVPLKELKMELFK-------------DGRQFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSKNPN 231 (695)
Q Consensus 165 ~~~~vGr~~~~~~l~~~L~~-------------~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~~~~ 231 (695)
.+.+.|+++.++++.+.+.. ..++-|.++|++|+|||++|+++++ ..... |+.++.
T Consensus 130 ~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~--~~~~~------~i~v~~--- 198 (389)
T PRK03992 130 YEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAH--ETNAT------FIRVVG--- 198 (389)
T ss_pred HHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHH--HhCCC------EEEeeh---
Confidence 34678999999999887641 2356699999999999999999987 33222 333321
Q ss_pred HHHHHHHHHHhcCCCCCCCCChHHHHHHHHHHHH-hcCCCcEEEEEeCCCCCC-----------hH---HHhhhc----c
Q 042541 232 VKAIVQKVLHHKGYPVPEFQTDEAAINDLERFFK-QMRIEAILLVLDDVWPGS-----------ES---LLQKLG----F 292 (695)
Q Consensus 232 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~-~l~~~~~LlVlDdv~~~~-----------~~---~~~~l~----~ 292 (695)
.++. ....+ . ....+..+++ .-...+.+|++||++... .. .+..+. .
T Consensus 199 -~~l~----~~~~g------~---~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~ 264 (389)
T PRK03992 199 -SELV----QKFIG------E---GARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDG 264 (389)
T ss_pred -HHHh----Hhhcc------c---hHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccc
Confidence 1111 11100 0 1122333332 223567899999986431 11 111111 1
Q ss_pred --CCCCCEEEEEcCCCC------C---CCCCeEecCCCChHHHHHHHHHhccCCCCCCCCCchHHHHHHHHhcCCc
Q 042541 293 --QLPDYKILVTSRSEF------P---QFGSVHYLKPLTYEAARTLFLHSANLQDGNSYIPDENIVSKILRACKGC 357 (695)
Q Consensus 293 --~~~gs~iivTtR~~~------~---~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~G~ 357 (695)
...+..||.||.... . .....+.+++.+.++-.++|+.+......... .....+++.+.|.
T Consensus 265 ~~~~~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~----~~~~~la~~t~g~ 336 (389)
T PRK03992 265 FDPRGNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADD----VDLEELAELTEGA 336 (389)
T ss_pred cCCCCCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCc----CCHHHHHHHcCCC
Confidence 112456777776541 1 23347899999999999999877643322111 1256677777775
No 124
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.93 E-value=2.6e-05 Score=80.70 Aligned_cols=96 Identities=15% Similarity=0.097 Sum_probs=63.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCCC--CCHHHHHHHHHHhcCCCCCCCCChH--HHHHHH
Q 042541 185 DGRQFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSKN--PNVKAIVQKVLHHKGYPVPEFQTDE--AAINDL 260 (695)
Q Consensus 185 ~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~~--~~~~~~~~~i~~~l~~~~~~~~~~~--~~~~~l 260 (695)
+....++|+|++|+|||||++.+++... .++|+. ..|+.+.+. .++.++++.+...+-....+.+... .....+
T Consensus 166 g~Gq~~~IvG~~g~GKTtL~~~i~~~I~-~nhfdv-~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v 243 (415)
T TIGR00767 166 GKGQRGLIVAPPKAGKTVLLQKIAQAIT-RNHPEV-ELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMV 243 (415)
T ss_pred CCCCEEEEECCCCCChhHHHHHHHHhhc-ccCCce-EEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHH
Confidence 3457899999999999999999998432 236887 559998866 6899999999654433222211111 111112
Q ss_pred HHHHHh--cCCCcEEEEEeCCCCC
Q 042541 261 ERFFKQ--MRIEAILLVLDDVWPG 282 (695)
Q Consensus 261 ~~~~~~--l~~~~~LlVlDdv~~~ 282 (695)
.+..+. -.|++++|++|++...
T Consensus 244 ~e~Ae~~~~~GkdVVLlIDEitR~ 267 (415)
T TIGR00767 244 IEKAKRLVEHKKDVVILLDSITRL 267 (415)
T ss_pred HHHHHHHHHcCCCeEEEEEChhHH
Confidence 222211 2589999999998543
No 125
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.92 E-value=0.00025 Score=79.22 Aligned_cols=189 Identities=14% Similarity=0.108 Sum_probs=104.9
Q ss_pred CCCCCCCcchHHHHHHHHHcCCc-eEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCCCCCHHHHHHHHHHhc
Q 042541 165 PVISPGLDVPLKELKMELFKDGR-QFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSKNPNVKAIVQKVLHHK 243 (695)
Q Consensus 165 ~~~~vGr~~~~~~l~~~L~~~~~-~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~~~~~~~~~~~i~~~l 243 (695)
-+.+||.+..++.|...+..+.. ..+.++|+.|+||||+|+.+++.---...... -.+..+ .....|...-
T Consensus 15 f~~iiGq~~v~~~L~~~i~~~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~----~~c~~c----~~c~~i~~g~ 86 (576)
T PRK14965 15 FSDLTGQEHVSRTLQNAIDTGRVAHAFLFTGARGVGKTSTARILAKALNCEQGLTA----EPCNVC----PPCVEITEGR 86 (576)
T ss_pred HHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCC----CCCCcc----HHHHHHhcCC
Confidence 35679999999999999887664 55689999999999999988763110010000 000000 0111111000
Q ss_pred CCCC---C-CCCChHHHHHHHHHHHHh--cCCCcEEEEEeCCCCCChH----HHhhhccCCCCCEEEEEcCCCCC-----
Q 042541 244 GYPV---P-EFQTDEAAINDLERFFKQ--MRIEAILLVLDDVWPGSES----LLQKLGFQLPDYKILVTSRSEFP----- 308 (695)
Q Consensus 244 ~~~~---~-~~~~~~~~~~~l~~~~~~--l~~~~~LlVlDdv~~~~~~----~~~~l~~~~~gs~iivTtR~~~~----- 308 (695)
.... . ......+.+..+...... ..++.-++|+|+++..... ++..+....+.+.+|++|.+...
T Consensus 87 ~~d~~eid~~s~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~~~kl~~tI 166 (576)
T PRK14965 87 SVDVFEIDGASNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKVPITI 166 (576)
T ss_pred CCCeeeeeccCccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCChhhhhHHH
Confidence 0000 0 000111112222222211 1355678999999776543 44555555556777766644311
Q ss_pred -CCCCeEecCCCChHHHHHHHHHhccCCCCCCCCCchHHHHHHHHhcCCch-hHHHHH
Q 042541 309 -QFGSVHYLKPLTYEAARTLFLHSANLQDGNSYIPDENIVSKILRACKGCP-LALKVV 364 (695)
Q Consensus 309 -~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~G~P-Lai~~~ 364 (695)
.-...+++.+++.++....+...+...+. .-..+.+..|++.++|.. .|+..+
T Consensus 167 ~SRc~~~~f~~l~~~~i~~~L~~i~~~egi---~i~~~al~~la~~a~G~lr~al~~L 221 (576)
T PRK14965 167 LSRCQRFDFRRIPLQKIVDRLRYIADQEGI---SISDAALALVARKGDGSMRDSLSTL 221 (576)
T ss_pred HHhhhhhhcCCCCHHHHHHHHHHHHHHhCC---CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 11237889999999988888766543322 123667888999999965 444444
No 126
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=97.90 E-value=6.2e-05 Score=73.69 Aligned_cols=176 Identities=14% Similarity=0.126 Sum_probs=110.6
Q ss_pred CCCCCCCCcchHHHHHHHHHcCCceEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCCCCCHHHHHHHHHHhc
Q 042541 164 PPVISPGLDVPLKELKMELFKDGRQFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSKNPNVKAIVQKVLHHK 243 (695)
Q Consensus 164 ~~~~~vGr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~~~~~~~~~~~i~~~l 243 (695)
.-+.++|-+..++-|...+.....++...+|++|.|||+-|..++...--.+.|++++.=.++|....+.-+-..+ .
T Consensus 34 t~de~~gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGisvvr~Ki-k-- 110 (346)
T KOG0989|consen 34 TFDELAGQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGISVVREKI-K-- 110 (346)
T ss_pred cHHhhcchHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhcccccccccchhhhh-c--
Confidence 3456799999999999988887789999999999999999998876322246788877655666544332110000 0
Q ss_pred CCCCCCCCChHHHHHHHHHHHHhc---CCCc-EEEEEeCCCCCChHHHhhh----ccCCCCCEEEEEcCCCCCCC-----
Q 042541 244 GYPVPEFQTDEAAINDLERFFKQM---RIEA-ILLVLDDVWPGSESLLQKL----GFQLPDYKILVTSRSEFPQF----- 310 (695)
Q Consensus 244 ~~~~~~~~~~~~~~~~l~~~~~~l---~~~~-~LlVlDdv~~~~~~~~~~l----~~~~~gs~iivTtR~~~~~~----- 310 (695)
..+.+....... .-++ -.+|||+++.....-+..+ ......++.|+.+-.-..-.
T Consensus 111 ------------~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi~S 178 (346)
T KOG0989|consen 111 ------------NFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPLVS 178 (346)
T ss_pred ------------CHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChHHHh
Confidence 000011000000 1122 5889999987765433333 23334566655544432111
Q ss_pred -CCeEecCCCChHHHHHHHHHhccCCCCCCCCCchHHHHHHHHhcCCc
Q 042541 311 -GSVHYLKPLTYEAARTLFLHSANLQDGNSYIPDENIVSKILRACKGC 357 (695)
Q Consensus 311 -~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~G~ 357 (695)
...|+.++|.+++...-+...+...+.. -..+..+.|++.++|-
T Consensus 179 RC~KfrFk~L~d~~iv~rL~~Ia~~E~v~---~d~~al~~I~~~S~Gd 223 (346)
T KOG0989|consen 179 RCQKFRFKKLKDEDIVDRLEKIASKEGVD---IDDDALKLIAKISDGD 223 (346)
T ss_pred hHHHhcCCCcchHHHHHHHHHHHHHhCCC---CCHHHHHHHHHHcCCc
Confidence 1278899999999999888887554442 2467789999999994
No 127
>PRK06620 hypothetical protein; Validated
Probab=97.88 E-value=0.00035 Score=67.71 Aligned_cols=155 Identities=14% Similarity=0.078 Sum_probs=90.2
Q ss_pred CCCCCCCCCcc--hHHHHHHHHHcCC--c--eEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCCCCCHHHHH
Q 042541 163 DPPVISPGLDV--PLKELKMELFKDG--R--QFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSKNPNVKAIV 236 (695)
Q Consensus 163 ~~~~~~vGr~~--~~~~l~~~L~~~~--~--~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~~~~~~~~~ 236 (695)
...+++||-.. ....+.++-...+ . +.+.|+|++|+|||+|++.+++.. . ..++. ..+.
T Consensus 14 tfd~Fvvg~~N~~a~~~~~~~~~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~--~------~~~~~--~~~~----- 78 (214)
T PRK06620 14 HPDEFIVSSSNDQAYNIIKNWQCGFGVNPYKFTLLIKGPSSSGKTYLTKIWQNLS--N------AYIIK--DIFF----- 78 (214)
T ss_pred CchhhEecccHHHHHHHHHHHHHccccCCCcceEEEECCCCCCHHHHHHHHHhcc--C------CEEcc--hhhh-----
Confidence 34556677633 2333333332211 2 568999999999999999987632 1 11221 0000
Q ss_pred HHHHHhcCCCCCCCCChHHHHHHHHHHHHhcCCCcEEEEEeCCCCCChH-HHhhhcc-CCCCCEEEEEcCCCCCC-----
Q 042541 237 QKVLHHKGYPVPEFQTDEAAINDLERFFKQMRIEAILLVLDDVWPGSES-LLQKLGF-QLPDYKILVTSRSEFPQ----- 309 (695)
Q Consensus 237 ~~i~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~~~LlVlDdv~~~~~~-~~~~l~~-~~~gs~iivTtR~~~~~----- 309 (695)
. . ... ...-+|++||+....+. +..-+.. ...|..+|+|++.....
T Consensus 79 ---------------~-~-------~~~----~~~d~lliDdi~~~~~~~lf~l~N~~~e~g~~ilits~~~p~~l~l~~ 131 (214)
T PRK06620 79 ---------------N-E-------EIL----EKYNAFIIEDIENWQEPALLHIFNIINEKQKYLLLTSSDKSRNFTLPD 131 (214)
T ss_pred ---------------c-h-------hHH----hcCCEEEEeccccchHHHHHHHHHHHHhcCCEEEEEcCCCccccchHH
Confidence 0 0 001 12357889999754322 2211111 13467899999876332
Q ss_pred ------CCCeEecCCCChHHHHHHHHHhccCCCCCCCCCchHHHHHHHHhcCCchhHHH
Q 042541 310 ------FGSVHYLKPLTYEAARTLFLHSANLQDGNSYIPDENIVSKILRACKGCPLALK 362 (695)
Q Consensus 310 ------~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~ 362 (695)
.+..+++++++.++-..++.+.+....- .-.+++..-|++.+.|---.+.
T Consensus 132 L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~~l---~l~~ev~~~L~~~~~~d~r~l~ 187 (214)
T PRK06620 132 LSSRIKSVLSILLNSPDDELIKILIFKHFSISSV---TISRQIIDFLLVNLPREYSKII 187 (214)
T ss_pred HHHHHhCCceEeeCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHccCCHHHHH
Confidence 2337999999999988888877643211 1237788889998888654443
No 128
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.88 E-value=0.00089 Score=73.07 Aligned_cols=173 Identities=14% Similarity=0.164 Sum_probs=101.7
Q ss_pred CCCCCCcch--HHHHHHHHHcC--CceEEEEEcCCCCcHHHHHHHHhccccccccC-CCcEEEEEeCCCCCHHHHHHHHH
Q 042541 166 VISPGLDVP--LKELKMELFKD--GRQFIVVSAPGGYGKTTLVQRLCKDDQVQGKF-KDDIFYVTVSKNPNVKAIVQKVL 240 (695)
Q Consensus 166 ~~~vGr~~~--~~~l~~~L~~~--~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f-~~~~~wv~~~~~~~~~~~~~~i~ 240 (695)
.+++|.... ...+..+...+ ...-+.|+|+.|+|||+|++.+++ .+...+ ...+++++.. ++...+.
T Consensus 123 ~fv~g~~n~~a~~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~ai~~--~~~~~~~~~~v~yi~~~------~~~~~~~ 194 (450)
T PRK00149 123 NFVVGKSNRLAHAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGN--YILEKNPNAKVVYVTSE------KFTNDFV 194 (450)
T ss_pred ccccCCCcHHHHHHHHHHHhCcCccCCeEEEECCCCCCHHHHHHHHHH--HHHHhCCCCeEEEEEHH------HHHHHHH
Confidence 455675543 22333333322 235689999999999999999998 454443 3335566543 3334444
Q ss_pred HhcCCCCCCCCChHHHHHHHHHHHHhcCCCcEEEEEeCCCCCC--h----HHHhhhcc-CCCCCEEEEEcCCCCC-----
Q 042541 241 HHKGYPVPEFQTDEAAINDLERFFKQMRIEAILLVLDDVWPGS--E----SLLQKLGF-QLPDYKILVTSRSEFP----- 308 (695)
Q Consensus 241 ~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~~~LlVlDdv~~~~--~----~~~~~l~~-~~~gs~iivTtR~~~~----- 308 (695)
..+... . ...+. +.++ +.-+||+||+.... + .+...+.. ...|..+|+||.....
T Consensus 195 ~~~~~~-----~----~~~~~---~~~~-~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l 261 (450)
T PRK00149 195 NALRNN-----T----MEEFK---EKYR-SVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGL 261 (450)
T ss_pred HHHHcC-----c----HHHHH---HHHh-cCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHH
Confidence 444211 1 11222 2223 34589999996432 1 12222211 1235568888875411
Q ss_pred --------CCCCeEecCCCChHHHHHHHHHhccCCCCCCCCCchHHHHHHHHhcCCchhHHH
Q 042541 309 --------QFGSVHYLKPLTYEAARTLFLHSANLQDGNSYIPDENIVSKILRACKGCPLALK 362 (695)
Q Consensus 309 --------~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~ 362 (695)
..+..+.+++.+.++-..++.+.+..... .-.+++...|++.+.|....+.
T Consensus 262 ~~~l~SRl~~gl~v~i~~pd~~~r~~il~~~~~~~~~---~l~~e~l~~ia~~~~~~~R~l~ 320 (450)
T PRK00149 262 EERLRSRFEWGLTVDIEPPDLETRIAILKKKAEEEGI---DLPDEVLEFIAKNITSNVRELE 320 (450)
T ss_pred HHHHHhHhcCCeeEEecCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHcCcCCCHHHHH
Confidence 12347899999999999999988754221 1246789999999999876544
No 129
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.86 E-value=9.4e-05 Score=77.96 Aligned_cols=110 Identities=13% Similarity=0.143 Sum_probs=70.7
Q ss_pred CCCCCCcchHHHHHHHHHcCCceEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCCCCCHHHHHHHHHHh-cC
Q 042541 166 VISPGLDVPLKELKMELFKDGRQFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSKNPNVKAIVQKVLHH-KG 244 (695)
Q Consensus 166 ~~~vGr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~~~~~~~~~~~i~~~-l~ 244 (695)
..+++.+..++.+...|... +.|.++|++|+|||++|+.+++.......|.. +.||.+++..+..+++..+.-. .+
T Consensus 175 ~d~~i~e~~le~l~~~L~~~--~~iil~GppGtGKT~lA~~la~~l~~~~~~~~-v~~VtFHpsySYeDFI~G~rP~~vg 251 (459)
T PRK11331 175 NDLFIPETTIETILKRLTIK--KNIILQGPPGVGKTFVARRLAYLLTGEKAPQR-VNMVQFHQSYSYEDFIQGYRPNGVG 251 (459)
T ss_pred hcccCCHHHHHHHHHHHhcC--CCEEEECCCCCCHHHHHHHHHHHhcCCcccce-eeEEeecccccHHHHhcccCCCCCC
Confidence 45688899999999988753 56788999999999999999884333344554 7899999988877765433110 11
Q ss_pred CCCCCCCChHHHHHHHHHHHHhcCCCcEEEEEeCCCCCC
Q 042541 245 YPVPEFQTDEAAINDLERFFKQMRIEAILLVLDDVWPGS 283 (695)
Q Consensus 245 ~~~~~~~~~~~~~~~l~~~~~~l~~~~~LlVlDdv~~~~ 283 (695)
.. ........+......-.+++++||+|++....
T Consensus 252 y~-----~~~G~f~~~~~~A~~~p~~~~vliIDEINRan 285 (459)
T PRK11331 252 FR-----RKDGIFYNFCQQAKEQPEKKYVFIIDEINRAN 285 (459)
T ss_pred eE-----ecCchHHHHHHHHHhcccCCcEEEEehhhccC
Confidence 00 00001111111111113578999999997765
No 130
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.86 E-value=0.0014 Score=62.91 Aligned_cols=176 Identities=16% Similarity=0.208 Sum_probs=110.7
Q ss_pred cCCceEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeC-CCCCHHHHHHHHHHhcCCCCCCCCChHHHHHHHHH
Q 042541 184 KDGRQFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVS-KNPNVKAIVQKVLHHKGYPVPEFQTDEAAINDLER 262 (695)
Q Consensus 184 ~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~-~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~ 262 (695)
.++.+++.++|.-|.|||.++++.... .. +..+.-+.+. ...+...+...|+..+..+. ..........+.+
T Consensus 48 ~d~qg~~~vtGevGsGKTv~~Ral~~s--~~---~d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p--~~~~~~~~e~~~~ 120 (269)
T COG3267 48 ADGQGILAVTGEVGSGKTVLRRALLAS--LN---EDQVAVVVIDKPTLSDATLLEAIVADLESQP--KVNVNAVLEQIDR 120 (269)
T ss_pred hcCCceEEEEecCCCchhHHHHHHHHh--cC---CCceEEEEecCcchhHHHHHHHHHHHhccCc--cchhHHHHHHHHH
Confidence 455679999999999999999955431 21 1112223443 44577888888988887632 1223333333444
Q ss_pred HH--HhcCCCc-EEEEEeCCCCCChHHHhhhc---cCCC-C---CEEEEEcCCCC----C-----CCC----CeEecCCC
Q 042541 263 FF--KQMRIEA-ILLVLDDVWPGSESLLQKLG---FQLP-D---YKILVTSRSEF----P-----QFG----SVHYLKPL 319 (695)
Q Consensus 263 ~~--~~l~~~~-~LlVlDdv~~~~~~~~~~l~---~~~~-g---s~iivTtR~~~----~-----~~~----~~~~l~~L 319 (695)
.+ ..-++++ ..+++||+.+.....++.+. .... + -+|+..-..+. . ... ..|.+.|+
T Consensus 121 ~L~al~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P~ 200 (269)
T COG3267 121 ELAALVKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPPL 200 (269)
T ss_pred HHHHHHHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhheEEEEEecCCc
Confidence 33 2225677 99999998766544333322 1111 1 22333322221 0 111 13899999
Q ss_pred ChHHHHHHHHHhccCCCCCCCCCchHHHHHHHHhcCCchhHHHHHHH
Q 042541 320 TYEAARTLFLHSANLQDGNSYIPDENIVSKILRACKGCPLALKVVGG 366 (695)
Q Consensus 320 ~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~~~ 366 (695)
+.++...++..+..+...+.+....+....|.....|.|.+|..++.
T Consensus 201 ~~~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg~P~lin~~~~ 247 (269)
T COG3267 201 TEAETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQGIPRLINNLAT 247 (269)
T ss_pred ChHHHHHHHHHHHhccCCCcccCChhHHHHHHHHhccchHHHHHHHH
Confidence 99999999998887765544444578889999999999999998765
No 131
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.84 E-value=9.2e-05 Score=85.56 Aligned_cols=149 Identities=13% Similarity=0.129 Sum_probs=86.8
Q ss_pred CCCCCCcchHHHHHHHHHcCCceEEEEEcCCCCcHHHHHHHHhccc---cccccC-CCcEEEEEeCCCCCHHHHHHHHHH
Q 042541 166 VISPGLDVPLKELKMELFKDGRQFIVVSAPGGYGKTTLVQRLCKDD---QVQGKF-KDDIFYVTVSKNPNVKAIVQKVLH 241 (695)
Q Consensus 166 ~~~vGr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~~~~~~---~~~~~f-~~~~~wv~~~~~~~~~~~~~~i~~ 241 (695)
+.++||+.+++++++.|......-+.++|++|+|||++|+.+++.. .+...+ ...++.++++ .++.
T Consensus 182 ~~~igr~~ei~~~~~~L~~~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~~~----------~l~a 251 (731)
T TIGR02639 182 DPLIGREDELERTIQVLCRRKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLDMG----------SLLA 251 (731)
T ss_pred CcccCcHHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEecHH----------HHhh
Confidence 4679999999999999986655667899999999999999998731 111112 2223333221 1111
Q ss_pred hcCCCCCCCCChHHHHHHHHHHHHhc-CCCcEEEEEeCCCCCC---------hHHHhhhccCC-CC-CEEEE-EcCCC--
Q 042541 242 HKGYPVPEFQTDEAAINDLERFFKQM-RIEAILLVLDDVWPGS---------ESLLQKLGFQL-PD-YKILV-TSRSE-- 306 (695)
Q Consensus 242 ~l~~~~~~~~~~~~~~~~l~~~~~~l-~~~~~LlVlDdv~~~~---------~~~~~~l~~~~-~g-s~iiv-TtR~~-- 306 (695)
... ...+....+..+++.+ ..++.+|++|++.... ......+.+.. .| -++|- ||..+
T Consensus 252 ~~~-------~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~~g~i~~IgaTt~~e~~ 324 (731)
T TIGR02639 252 GTK-------YRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALSSGKLRCIGSTTYEEYK 324 (731)
T ss_pred hcc-------ccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHhCCCeEEEEecCHHHHH
Confidence 000 0112334566666444 3468999999985321 11111122211 23 34444 44421
Q ss_pred -C--------CCCCCeEecCCCChHHHHHHHHHhc
Q 042541 307 -F--------PQFGSVHYLKPLTYEAARTLFLHSA 332 (695)
Q Consensus 307 -~--------~~~~~~~~l~~L~~~ea~~Lf~~~~ 332 (695)
. ... ..+.+++++.++..+++....
T Consensus 325 ~~~~~d~al~rRf-~~i~v~~p~~~~~~~il~~~~ 358 (731)
T TIGR02639 325 NHFEKDRALSRRF-QKIDVGEPSIEETVKILKGLK 358 (731)
T ss_pred HHhhhhHHHHHhC-ceEEeCCCCHHHHHHHHHHHH
Confidence 0 112 278999999999999998654
No 132
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.84 E-value=0.00073 Score=75.79 Aligned_cols=189 Identities=13% Similarity=0.140 Sum_probs=106.5
Q ss_pred CCCCCCcchHHHHHHHHHcCC-ceEEEEEcCCCCcHHHHHHHHhccccccc-cCCCcEEEEEeCCCCCHHHHHHHHHHhc
Q 042541 166 VISPGLDVPLKELKMELFKDG-RQFIVVSAPGGYGKTTLVQRLCKDDQVQG-KFKDDIFYVTVSKNPNVKAIVQKVLHHK 243 (695)
Q Consensus 166 ~~~vGr~~~~~~l~~~L~~~~-~~vv~I~G~gGiGKTtLa~~~~~~~~~~~-~f~~~~~wv~~~~~~~~~~~~~~i~~~l 243 (695)
..++|.+..++.|..++..+. ...+.++|+.|+||||+|+.+++. +.. .... . ....+..-...+.+....
T Consensus 16 ~~liGq~~i~~~L~~~l~~~rl~~a~Lf~Gp~G~GKttlA~~lAk~--L~c~~~~~-~----~~~~Cg~C~~C~~i~~g~ 88 (620)
T PRK14948 16 DELVGQEAIATTLKNALISNRIAPAYLFTGPRGTGKTSSARILAKS--LNCLNSDK-P----TPEPCGKCELCRAIAAGN 88 (620)
T ss_pred hhccChHHHHHHHHHHHHcCCCCceEEEECCCCCChHHHHHHHHHH--hcCCCcCC-C----CCCCCcccHHHHHHhcCC
Confidence 457999999999988888665 367889999999999999999873 211 1100 0 000111112222222211
Q ss_pred CCCCCCC-CChHHHHHHHHHHHHhc-----CCCcEEEEEeCCCCCChH----HHhhhccCCCCCEEEEEcCCCCC-----
Q 042541 244 GYPVPEF-QTDEAAINDLERFFKQM-----RIEAILLVLDDVWPGSES----LLQKLGFQLPDYKILVTSRSEFP----- 308 (695)
Q Consensus 244 ~~~~~~~-~~~~~~~~~l~~~~~~l-----~~~~~LlVlDdv~~~~~~----~~~~l~~~~~gs~iivTtR~~~~----- 308 (695)
....... .......+.++++++.. .+++-++|+|+++..... ++..+......+.+|++|.+...
T Consensus 89 h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~llpTI 168 (620)
T PRK14948 89 ALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVLPTI 168 (620)
T ss_pred CccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhhhhHHH
Confidence 1100000 00011123333333221 356679999999876643 44444443345666655544311
Q ss_pred -CCCCeEecCCCChHHHHHHHHHhccCCCCCCCCCchHHHHHHHHhcCCchhHHHHH
Q 042541 309 -QFGSVHYLKPLTYEAARTLFLHSANLQDGNSYIPDENIVSKILRACKGCPLALKVV 364 (695)
Q Consensus 309 -~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~ 364 (695)
.-...+.+.+++.++....+...+...... -..+.+..|++.++|.+..+..+
T Consensus 169 rSRc~~~~f~~l~~~ei~~~L~~ia~kegi~---is~~al~~La~~s~G~lr~A~~l 222 (620)
T PRK14948 169 ISRCQRFDFRRIPLEAMVQHLSEIAEKESIE---IEPEALTLVAQRSQGGLRDAESL 222 (620)
T ss_pred HhheeEEEecCCCHHHHHHHHHHHHHHhCCC---CCHHHHHHHHHHcCCCHHHHHHH
Confidence 112378888999998888877665432221 13567889999999987655443
No 133
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=97.83 E-value=1.7e-06 Score=86.88 Aligned_cols=128 Identities=13% Similarity=0.170 Sum_probs=102.3
Q ss_pred ceEEEEEEccCccccCChhhcCCCCCcEEEEcccCCCCcccCcccccccCCCCcEEEecc-CCCCCcc--cccccccccE
Q 042541 551 EVKVVVLNIRTKKYVLPDFLQKMDELKVLIVTNYGFSPAELNNFRVLSALSKLKKIRLEH-VSLPNSL--ATVRMNHLQK 627 (695)
Q Consensus 551 ~l~~L~l~~~~~~~~~p~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~-~~l~~lp--~i~~l~~L~~ 627 (695)
....+.|+.|......|..|+.+++||.|||++|+++-- .+..+..|.+|-.|-+.+ |.|+.+| .+++|..|+-
T Consensus 68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I---~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqr 144 (498)
T KOG4237|consen 68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFI---APDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQR 144 (498)
T ss_pred cceEEEeccCCcccCChhhccchhhhceecccccchhhc---ChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHH
Confidence 345566766655555556999999999999999987421 223366777776666655 8999999 9999999999
Q ss_pred EeeccccCCcccccchhhhcccCCCccEEecccccccccCch-hhcCCCCCceeeccccc
Q 042541 628 VSLVMCNVGQVFRNSTFRISDAFPNLLEMDIDYCNDLIELPD-GLCDIVSMEKLRITNCH 686 (695)
Q Consensus 628 L~l~~~~i~~~~~~~~~~l~~~l~~L~~L~l~~c~~l~~lP~-~i~~L~~L~~L~l~~~~ 686 (695)
|.+.-|.+..+++..+- .|++|..|.+-+ +.+..++. .+..+.+++++++.-|+
T Consensus 145 LllNan~i~Cir~~al~----dL~~l~lLslyD-n~~q~i~~~tf~~l~~i~tlhlA~np 199 (498)
T KOG4237|consen 145 LLLNANHINCIRQDALR----DLPSLSLLSLYD-NKIQSICKGTFQGLAAIKTLHLAQNP 199 (498)
T ss_pred HhcChhhhcchhHHHHH----Hhhhcchhcccc-hhhhhhccccccchhccchHhhhcCc
Confidence 99999999999888886 899999999988 46788888 58899999999987765
No 134
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=97.82 E-value=0.00026 Score=68.69 Aligned_cols=170 Identities=20% Similarity=0.242 Sum_probs=103.9
Q ss_pred CCCCCCCCCCcchHHHHHHHHH-----cCCceEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCCCCCHHHHH
Q 042541 162 PDPPVISPGLDVPLKELKMELF-----KDGRQFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSKNPNVKAIV 236 (695)
Q Consensus 162 ~~~~~~~vGr~~~~~~l~~~L~-----~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~~~~~~~~~ 236 (695)
|..-..|||-++-++++.-++. ++..-.|.++|++|.||||||.-+++ .....+.. .-+..
T Consensus 22 P~~l~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~--Emgvn~k~-----tsGp~------- 87 (332)
T COG2255 22 PKTLDEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIAN--ELGVNLKI-----TSGPA------- 87 (332)
T ss_pred cccHHHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHH--HhcCCeEe-----ccccc-------
Confidence 3334568999988888877776 33467899999999999999999998 44443321 00100
Q ss_pred HHHHHhcCCCCCCCCChHHHHHHHHHHHHhcCCCcEEEEEeCCCCCChHH-------Hhhh-----ccCCCCCE------
Q 042541 237 QKVLHHKGYPVPEFQTDEAAINDLERFFKQMRIEAILLVLDDVWPGSESL-------LQKL-----GFQLPDYK------ 298 (695)
Q Consensus 237 ~~i~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~~~LlVlDdv~~~~~~~-------~~~l-----~~~~~gs~------ 298 (695)
-+.-..+..++..++.+. +|.+|.+....... .+.| .-.++++|
T Consensus 88 -----------------leK~gDlaaiLt~Le~~D-VLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldL 149 (332)
T COG2255 88 -----------------LEKPGDLAAILTNLEEGD-VLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDL 149 (332)
T ss_pred -----------------ccChhhHHHHHhcCCcCC-eEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccC
Confidence 001122333443344333 44557765443211 1111 11223333
Q ss_pred -----EEEEcCCCC------CCCCCeEecCCCChHHHHHHHHHhccCCCCCCCCCchHHHHHHHHhcCCchhHHHHHHH
Q 042541 299 -----ILVTSRSEF------PQFGSVHYLKPLTYEAARTLFLHSANLQDGNSYIPDENIVSKILRACKGCPLALKVVGG 366 (695)
Q Consensus 299 -----iivTtR~~~------~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~~~ 366 (695)
|=.|||.-. ...|.+.+++..+.+|-.++..+.+..-.. .-.++.+.+|+++..|-|.-..-+-+
T Consensus 150 ppFTLIGATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~i---~i~~~~a~eIA~rSRGTPRIAnRLLr 225 (332)
T COG2255 150 PPFTLIGATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILGI---EIDEEAALEIARRSRGTPRIANRLLR 225 (332)
T ss_pred CCeeEeeeccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhCC---CCChHHHHHHHHhccCCcHHHHHHHH
Confidence 224888762 245668999999999999999987743322 12467899999999999975544433
No 135
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=97.80 E-value=0.001 Score=68.11 Aligned_cols=165 Identities=16% Similarity=0.134 Sum_probs=98.9
Q ss_pred hHHHHHHHHHcCCc-eEEEEEcCCCCcHHHHHHHHhcccccc----------------ccCCCcEEEEEeCCCCCHHHHH
Q 042541 174 PLKELKMELFKDGR-QFIVVSAPGGYGKTTLVQRLCKDDQVQ----------------GKFKDDIFYVTVSKNPNVKAIV 236 (695)
Q Consensus 174 ~~~~l~~~L~~~~~-~vv~I~G~gGiGKTtLa~~~~~~~~~~----------------~~f~~~~~wv~~~~~~~~~~~~ 236 (695)
..+.+...+..+.. ..+.++|+.|+||+++|..++..---. +..+. +.|+......
T Consensus 12 ~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD-~~~i~~~p~~------ 84 (319)
T PRK08769 12 AYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPD-LQLVSFIPNR------ 84 (319)
T ss_pred HHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCC-EEEEecCCCc------
Confidence 45666666666654 468899999999999998877621001 11111 2233210000
Q ss_pred HHHHHhcCCCCCCCCChHHHHHHHHHHHHhc-----CCCcEEEEEeCCCCCChH----HHhhhccCCCCCEEEEEcCCCC
Q 042541 237 QKVLHHKGYPVPEFQTDEAAINDLERFFKQM-----RIEAILLVLDDVWPGSES----LLQKLGFQLPDYKILVTSRSEF 307 (695)
Q Consensus 237 ~~i~~~l~~~~~~~~~~~~~~~~l~~~~~~l-----~~~~~LlVlDdv~~~~~~----~~~~l~~~~~gs~iivTtR~~~ 307 (695)
. .......-.+++++++.+.+ .+++-++|+|+++..... +++.+....+++.+|++|....
T Consensus 85 ---------~-~~k~~~~I~idqIR~l~~~~~~~p~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~ 154 (319)
T PRK08769 85 ---------T-GDKLRTEIVIEQVREISQKLALTPQYGIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPA 154 (319)
T ss_pred ---------c-cccccccccHHHHHHHHHHHhhCcccCCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChh
Confidence 0 00000112234444444322 466789999999877643 6666666667888888877652
Q ss_pred CCC------CCeEecCCCChHHHHHHHHHhccCCCCCCCCCchHHHHHHHHhcCCchhHHHHH
Q 042541 308 PQF------GSVHYLKPLTYEAARTLFLHSANLQDGNSYIPDENIVSKILRACKGCPLALKVV 364 (695)
Q Consensus 308 ~~~------~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~ 364 (695)
.-. ...+.+.+++.+++.+.+.... .....+..++..++|.|+.+..+
T Consensus 155 ~lLpTIrSRCq~i~~~~~~~~~~~~~L~~~~---------~~~~~a~~~~~l~~G~p~~A~~~ 208 (319)
T PRK08769 155 RLPATIRSRCQRLEFKLPPAHEALAWLLAQG---------VSERAAQEALDAARGHPGLAAQW 208 (319)
T ss_pred hCchHHHhhheEeeCCCcCHHHHHHHHHHcC---------CChHHHHHHHHHcCCCHHHHHHH
Confidence 211 2278899999999988886531 12334778899999999866544
No 136
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.79 E-value=9.5e-06 Score=91.60 Aligned_cols=129 Identities=17% Similarity=0.248 Sum_probs=85.3
Q ss_pred CccceEEeeecCCcccCCCC---CCCCCceEEEEEEccCc-cccCChhhcCCCCCcEEEEcccCCCCcccCcccccccCC
Q 042541 526 PNNASLLSISTDETFSSNWP---DMQGPEVKVVVLNIRTK-KYVLPDFLQKMDELKVLIVTNYGFSPAELNNFRVLSALS 601 (695)
Q Consensus 526 ~~~~r~l~~~~~~~~~~~~~---~~~~~~l~~L~l~~~~~-~~~~p~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~ 601 (695)
..+.|||.+.+...+...|+ ...+|.|++|.+.+... ...+.....++++|+.||+++++. .++..++.|.
T Consensus 121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI-----~nl~GIS~Lk 195 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNI-----SNLSGISRLK 195 (699)
T ss_pred HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCc-----cCcHHHhccc
Confidence 35789999988877776664 34688888888877533 223344456778888888887554 3445578888
Q ss_pred CCcEEEeccCCCCCcc---cccccccccEEeeccccCCcccccchh---hhcccCCCccEEeccc
Q 042541 602 KLKKIRLEHVSLPNSL---ATVRMNHLQKVSLVMCNVGQVFRNSTF---RISDAFPNLLEMDIDY 660 (695)
Q Consensus 602 ~L~~L~L~~~~l~~lp---~i~~l~~L~~L~l~~~~i~~~~~~~~~---~l~~~l~~L~~L~l~~ 660 (695)
||+.|.+.+-.+..-+ .+.+|++|+.||+|..+....+ .+.. .-...||+|+.||.++
T Consensus 196 nLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~-~ii~qYlec~~~LpeLrfLDcSg 259 (699)
T KOG3665|consen 196 NLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDT-KIIEQYLECGMVLPELRFLDCSG 259 (699)
T ss_pred cHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccch-HHHHHHHHhcccCccccEEecCC
Confidence 8888888877766433 6667888888888877544433 1110 0011577777777776
No 137
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.79 E-value=0.0007 Score=69.96 Aligned_cols=89 Identities=15% Similarity=0.085 Sum_probs=61.2
Q ss_pred CCcEEEEEeCCCCCChH----HHhhhccCCCCCEEEEEcCCCCCCC------CCeEecCCCChHHHHHHHHHhccCCCCC
Q 042541 269 IEAILLVLDDVWPGSES----LLQKLGFQLPDYKILVTSRSEFPQF------GSVHYLKPLTYEAARTLFLHSANLQDGN 338 (695)
Q Consensus 269 ~~~~LlVlDdv~~~~~~----~~~~l~~~~~gs~iivTtR~~~~~~------~~~~~l~~L~~~ea~~Lf~~~~~~~~~~ 338 (695)
+++-++|+|+++..... +++.+....+++.+|+||.+...-. ...+.+.+++.+++.+.+......
T Consensus 105 ~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~L~~~~~~---- 180 (328)
T PRK05707 105 GGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESLQWLQQALPE---- 180 (328)
T ss_pred CCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCCCcCHHHHHHHHHHhccc----
Confidence 55556678999877643 5565655556788888887763211 227899999999999988765310
Q ss_pred CCCCchHHHHHHHHhcCCchhHHHHH
Q 042541 339 SYIPDENIVSKILRACKGCPLALKVV 364 (695)
Q Consensus 339 ~~~~~~~~~~~I~~~c~G~PLai~~~ 364 (695)
...+.+..++..++|.|+.+..+
T Consensus 181 ---~~~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 181 ---SDERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred ---CChHHHHHHHHHcCCCHHHHHHH
Confidence 12345678899999999765544
No 138
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.78 E-value=0.00073 Score=70.12 Aligned_cols=167 Identities=20% Similarity=0.264 Sum_probs=105.7
Q ss_pred CCCCCCCCCcchHHHHHHHHH----cCCceEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCCCCCHHHHHHH
Q 042541 163 DPPVISPGLDVPLKELKMELF----KDGRQFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSKNPNVKAIVQK 238 (695)
Q Consensus 163 ~~~~~~vGr~~~~~~l~~~L~----~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~~~~~~~~~~~ 238 (695)
..+..++||+.|+..+.+++. ....+-+-|.|-+|.|||.+...++.+..-...-. .++++++..-....+++..
T Consensus 147 ~~p~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~-~~v~inc~sl~~~~aiF~k 225 (529)
T KOG2227|consen 147 APPGTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSP-VTVYINCTSLTEASAIFKK 225 (529)
T ss_pred CCCCCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccc-eeEEEeeccccchHHHHHH
Confidence 346678999999999999887 33467788999999999999999988532211111 2468887776777778887
Q ss_pred HHHhcC--CCCCCCCChHHHHHHHHHHHHhcC--CCcEEEEEeCCCCCCh----HHHhhhcc-CCCCCEEEEEcCCC---
Q 042541 239 VLHHKG--YPVPEFQTDEAAINDLERFFKQMR--IEAILLVLDDVWPGSE----SLLQKLGF-QLPDYKILVTSRSE--- 306 (695)
Q Consensus 239 i~~~l~--~~~~~~~~~~~~~~~l~~~~~~l~--~~~~LlVlDdv~~~~~----~~~~~l~~-~~~gs~iivTtR~~--- 306 (695)
|...+. ...+. .. .+.+..+-++.. ...+|+|+|.++.... .+...|.+ ..+++++|+.--..
T Consensus 226 I~~~~~q~~~s~~--~~---~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANslD 300 (529)
T KOG2227|consen 226 IFSSLLQDLVSPG--TG---MQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSLD 300 (529)
T ss_pred HHHHHHHHhcCCc--hh---HHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCCcceeeeeeehhhhh
Confidence 777762 11111 11 222222223332 2468999999854321 12233333 34677766532221
Q ss_pred ------------CCCCCCeEecCCCChHHHHHHHHHhccCC
Q 042541 307 ------------FPQFGSVHYLKPLTYEAARTLFLHSANLQ 335 (695)
Q Consensus 307 ------------~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~ 335 (695)
....+..+..+|.+.++-.++|..+....
T Consensus 301 lTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~ 341 (529)
T KOG2227|consen 301 LTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEE 341 (529)
T ss_pred HHHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcc
Confidence 11223378889999999999999887443
No 139
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.77 E-value=0.00033 Score=70.47 Aligned_cols=148 Identities=15% Similarity=0.145 Sum_probs=77.2
Q ss_pred CCCCCcchHHHHHHHHH---------------cCCceEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCCCCC
Q 042541 167 ISPGLDVPLKELKMELF---------------KDGRQFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSKNPN 231 (695)
Q Consensus 167 ~~vGr~~~~~~l~~~L~---------------~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~~~~ 231 (695)
.++|.+..+++|.+... .+...-+.++|++|+||||+|+.+++...-.+....+ .++.++..
T Consensus 7 ~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~-~~v~~~~~-- 83 (261)
T TIGR02881 7 RMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKG-HLIEVERA-- 83 (261)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCC-ceEEecHH--
Confidence 46888887766654322 1124568899999999999999998631101111111 13333221
Q ss_pred HHHHHHHHHHhcCCCCCCCCChHHHHHHHHHHHHhcCCCcEEEEEeCCCCCC--------hH----HHhhhccCCCCCEE
Q 042541 232 VKAIVQKVLHHKGYPVPEFQTDEAAINDLERFFKQMRIEAILLVLDDVWPGS--------ES----LLQKLGFQLPDYKI 299 (695)
Q Consensus 232 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~~~LlVlDdv~~~~--------~~----~~~~l~~~~~gs~i 299 (695)
++... ..+ +....+..+++... ..+|++|++.... .. ++..+........+
T Consensus 84 --~l~~~---~~g----------~~~~~~~~~~~~a~--~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~v 146 (261)
T TIGR02881 84 --DLVGE---YIG----------HTAQKTREVIKKAL--GGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVL 146 (261)
T ss_pred --Hhhhh---hcc----------chHHHHHHHHHhcc--CCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEE
Confidence 11111 011 01123344443322 3588999996522 11 22222222223355
Q ss_pred EEEcCCCC------------CCCCCeEecCCCChHHHHHHHHHhccC
Q 042541 300 LVTSRSEF------------PQFGSVHYLKPLTYEAARTLFLHSANL 334 (695)
Q Consensus 300 ivTtR~~~------------~~~~~~~~l~~L~~~ea~~Lf~~~~~~ 334 (695)
|+++.... ......+.+++++.++-.+++.+.+..
T Consensus 147 ila~~~~~~~~~~~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~~~ 193 (261)
T TIGR02881 147 ILAGYSDEMDYFLSLNPGLRSRFPISIDFPDYTVEELMEIAERMVKE 193 (261)
T ss_pred EecCCcchhHHHHhcChHHHhccceEEEECCCCHHHHHHHHHHHHHH
Confidence 55543321 112336889999999999999877643
No 140
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=97.74 E-value=0.0009 Score=75.13 Aligned_cols=112 Identities=15% Similarity=0.207 Sum_probs=66.7
Q ss_pred CCCCCCcchHHHHHHHHH-------cC--CceEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCCCCCHHHHH
Q 042541 166 VISPGLDVPLKELKMELF-------KD--GRQFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSKNPNVKAIV 236 (695)
Q Consensus 166 ~~~vGr~~~~~~l~~~L~-------~~--~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~~~~~~~~~ 236 (695)
..++|-+..++.+.+.+. ++ ........|+.|||||.||+.++. .+-+.=+. .+-++.|+....
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~--~Lfg~e~a-liR~DMSEy~Ek---- 563 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAE--ALFGDEQA-LIRIDMSEYMEK---- 563 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHH--HhcCCCcc-ceeechHHHHHH----
Confidence 346999999999988887 11 246777899999999999999887 23221122 334444443221
Q ss_pred HHHHHhcCCCCCCCCChHHHHHHHHHHHHhcCCCcE-EEEEeCCCCCChHHHhh
Q 042541 237 QKVLHHKGYPVPEFQTDEAAINDLERFFKQMRIEAI-LLVLDDVWPGSESLLQK 289 (695)
Q Consensus 237 ~~i~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~~~-LlVlDdv~~~~~~~~~~ 289 (695)
.-+..|-+.+|+-...++. ..|- +..+.++| ++.||++...+..+..-
T Consensus 564 -HsVSrLIGaPPGYVGyeeG-G~LT---EaVRr~PySViLlDEIEKAHpdV~ni 612 (786)
T COG0542 564 -HSVSRLIGAPPGYVGYEEG-GQLT---EAVRRKPYSVILLDEIEKAHPDVFNL 612 (786)
T ss_pred -HHHHHHhCCCCCCceeccc-cchh---HhhhcCCCeEEEechhhhcCHHHHHH
Confidence 2223333333332222221 1122 45567777 88899998887664433
No 141
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=97.72 E-value=9.7e-06 Score=82.65 Aligned_cols=135 Identities=17% Similarity=0.190 Sum_probs=96.6
Q ss_pred CCCCceEEEEEEccCccc-cCChhhcCCCCCcEEEEcccC-CCCcccCcccccccCCCCcEEEeccCCCCCcc---cccc
Q 042541 547 MQGPEVKVVVLNIRTKKY-VLPDFLQKMDELKVLIVTNYG-FSPAELNNFRVLSALSKLKKIRLEHVSLPNSL---ATVR 621 (695)
Q Consensus 547 ~~~~~l~~L~l~~~~~~~-~~p~~~~~l~~Lr~L~l~~~~-~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~lp---~i~~ 621 (695)
..+++++.|.|+.|.... .+...+..+++|..|.|..|. .... .. ...-+..|+.|+|++|++-.++ ..+.
T Consensus 194 ~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~---~~-~~~i~~~L~~LdLs~N~li~~~~~~~~~~ 269 (505)
T KOG3207|consen 194 LLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIK---AT-STKILQTLQELDLSNNNLIDFDQGYKVGT 269 (505)
T ss_pred hhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhccccccee---cc-hhhhhhHHhhccccCCccccccccccccc
Confidence 368899999999985443 344456778999999999873 2111 11 1334667999999999987555 7889
Q ss_pred cccccEEeeccccCCccc--ccchhhhcccCCCccEEecccccccccCch--hhcCCCCCceeeccccc
Q 042541 622 MNHLQKVSLVMCNVGQVF--RNSTFRISDAFPNLLEMDIDYCNDLIELPD--GLCDIVSMEKLRITNCH 686 (695)
Q Consensus 622 l~~L~~L~l~~~~i~~~~--~~~~~~l~~~l~~L~~L~l~~c~~l~~lP~--~i~~L~~L~~L~l~~~~ 686 (695)
|+.|+.|+++.|.+..+- +.-.....+.+++|+.|++..| ++..+|+ .+..+.+|++|.+..|.
T Consensus 270 l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N-~I~~w~sl~~l~~l~nlk~l~~~~n~ 337 (505)
T KOG3207|consen 270 LPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISEN-NIRDWRSLNHLRTLENLKHLRITLNY 337 (505)
T ss_pred ccchhhhhccccCcchhcCCCccchhhhcccccceeeecccC-ccccccccchhhccchhhhhhccccc
Confidence 999999999999877653 3211122237999999999985 4555553 36677888999887755
No 142
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=97.72 E-value=0.0048 Score=64.41 Aligned_cols=192 Identities=17% Similarity=0.191 Sum_probs=123.5
Q ss_pred CcchHHHHHHHHHcCCceEEEEEcCCCCcHHHHH-HHHhccccccccCCCcEEEEEeCCC---CCHHHHHHHHHHhcCCC
Q 042541 171 LDVPLKELKMELFKDGRQFIVVSAPGGYGKTTLV-QRLCKDDQVQGKFKDDIFYVTVSKN---PNVKAIVQKVLHHKGYP 246 (695)
Q Consensus 171 r~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa-~~~~~~~~~~~~f~~~~~wv~~~~~---~~~~~~~~~i~~~l~~~ 246 (695)
|.+.+++|..||....-..|.|.||-|+||+.|+ .++.++ .+. ++.+++.+- .+-..++..+..++|+.
T Consensus 1 R~e~~~~L~~wL~e~~~TFIvV~GPrGSGK~elV~d~~L~~------r~~-vL~IDC~~i~~ar~D~~~I~~lA~qvGY~ 73 (431)
T PF10443_consen 1 RKEAIEQLKSWLNENPNTFIVVQGPRGSGKRELVMDHVLKD------RKN-VLVIDCDQIVKARGDAAFIKNLASQVGYF 73 (431)
T ss_pred CchHHHHHHHHHhcCCCeEEEEECCCCCCccHHHHHHHHhC------CCC-EEEEEChHhhhccChHHHHHHHHHhcCCC
Confidence 6678899999999777789999999999999999 777663 222 778887643 35667777777777652
Q ss_pred C-----------------------CCCCChHHHHHHHHHHH----Hhc--------------------------CCCcEE
Q 042541 247 V-----------------------PEFQTDEAAINDLERFF----KQM--------------------------RIEAIL 273 (695)
Q Consensus 247 ~-----------------------~~~~~~~~~~~~l~~~~----~~l--------------------------~~~~~L 273 (695)
+ .+.. +....+++.++ ..| ..++=+
T Consensus 74 PvFsw~nSiss~IDLa~qGltGqKaGfS--es~e~Ql~~IL~~t~~ALr~ial~~~~~~~~~~~l~e~~yl~~hPe~~PV 151 (431)
T PF10443_consen 74 PVFSWMNSISSFIDLAVQGLTGQKAGFS--ESLETQLKKILQTTATALRDIALSNRKKDDKDANLKEEDYLEAHPERRPV 151 (431)
T ss_pred cchHHHHHHHHHHHHHHhhccccccCCC--CChHHHHHHHHHHHHHHHHHHHHHhhhccccccccCchhhhhhCCccCCE
Confidence 2 1111 11112222222 111 123568
Q ss_pred EEEeCCCCCChH---------HHhhhccCCCCCEEEEEcCCCCC----------CCCCeEecCCCChHHHHHHHHHhccC
Q 042541 274 LVLDDVWPGSES---------LLQKLGFQLPDYKILVTSRSEFP----------QFGSVHYLKPLTYEAARTLFLHSANL 334 (695)
Q Consensus 274 lVlDdv~~~~~~---------~~~~l~~~~~gs~iivTtR~~~~----------~~~~~~~l~~L~~~ea~~Lf~~~~~~ 334 (695)
||+||.-...+. .|.......+=.+||++|-+... ..-..+.|.-.+++.|..+...+...
T Consensus 152 VVIdnF~~k~~~~~~iy~~laeWAa~Lv~~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~yV~~~L~~ 231 (431)
T PF10443_consen 152 VVIDNFLHKAEENDFIYDKLAEWAASLVQNNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQYVLSQLDE 231 (431)
T ss_pred EEEcchhccCcccchHHHHHHHHHHHHHhcCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHHHHHHhcc
Confidence 999998443311 23333333344789998877621 11237889999999999999988754
Q ss_pred CCCC------------CC-----CCchHHHHHHHHhcCCchhHHHHHHHhhCCC
Q 042541 335 QDGN------------SY-----IPDENIVSKILRACKGCPLALKVVGGSLCGK 371 (695)
Q Consensus 335 ~~~~------------~~-----~~~~~~~~~I~~~c~G~PLai~~~~~~L~~~ 371 (695)
.... .. ..........++.+||=-.-+..+++.++..
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiksG 285 (431)
T PF10443_consen 232 DTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKSG 285 (431)
T ss_pred cccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHcC
Confidence 3210 00 1234556778888999888888888888753
No 143
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.71 E-value=0.00015 Score=84.94 Aligned_cols=174 Identities=14% Similarity=0.163 Sum_probs=94.3
Q ss_pred CCCCCCcchHHHHHHHHHcCCceEEEEEcCCCCcHHHHHHHHhcccc---ccccCCCcEEEEEeCCCCCHHHHHHHHHHh
Q 042541 166 VISPGLDVPLKELKMELFKDGRQFIVVSAPGGYGKTTLVQRLCKDDQ---VQGKFKDDIFYVTVSKNPNVKAIVQKVLHH 242 (695)
Q Consensus 166 ~~~vGr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~---~~~~f~~~~~wv~~~~~~~~~~~~~~i~~~ 242 (695)
+.++||+++++++++.|......-+.++|++|+|||++|..++.... +........+|. + +...+ +.
T Consensus 179 ~~~igr~~ei~~~~~~L~r~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~-l----~~~~l----~a- 248 (821)
T CHL00095 179 DPVIGREKEIERVIQILGRRTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVIT-L----DIGLL----LA- 248 (821)
T ss_pred CCCCCcHHHHHHHHHHHcccccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEE-e----eHHHH----hc-
Confidence 35799999999999999865555667999999999999999987311 111121213332 1 11111 11
Q ss_pred cCCCCCCCCChHHHHHHHHHHHHhc-CCCcEEEEEeCCCCCC--------hHHHhhhccCC-CC-CEEEEEcC-CCC---
Q 042541 243 KGYPVPEFQTDEAAINDLERFFKQM-RIEAILLVLDDVWPGS--------ESLLQKLGFQL-PD-YKILVTSR-SEF--- 307 (695)
Q Consensus 243 l~~~~~~~~~~~~~~~~l~~~~~~l-~~~~~LlVlDdv~~~~--------~~~~~~l~~~~-~g-s~iivTtR-~~~--- 307 (695)
+.. ...+..+.+..+++.+ ..++.+|++|++.... ......+.+.. .| -++|.+|. .+.
T Consensus 249 --g~~----~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~rg~l~~IgaTt~~ey~~~ 322 (821)
T CHL00095 249 --GTK----YRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALARGELQCIGATTLDEYRKH 322 (821)
T ss_pred --cCC----CccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHhCCCcEEEEeCCHHHHHHH
Confidence 110 1123344566666433 3568999999984211 01111121111 22 45555444 321
Q ss_pred ----C---CCCCeEecCCCChHHHHHHHHHhccC--CCCCCCCCchHHHHHHHHhcCC
Q 042541 308 ----P---QFGSVHYLKPLTYEAARTLFLHSANL--QDGNSYIPDENIVSKILRACKG 356 (695)
Q Consensus 308 ----~---~~~~~~~l~~L~~~ea~~Lf~~~~~~--~~~~~~~~~~~~~~~I~~~c~G 356 (695)
. ..-..+.+...+.++...++...... ...... -..+....+++.++|
T Consensus 323 ie~D~aL~rRf~~I~v~ep~~~e~~aILr~l~~~~e~~~~v~-i~deal~~i~~ls~~ 379 (821)
T CHL00095 323 IEKDPALERRFQPVYVGEPSVEETIEILFGLRSRYEKHHNLS-ISDKALEAAAKLSDQ 379 (821)
T ss_pred HhcCHHHHhcceEEecCCCCHHHHHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHhhc
Confidence 1 11126788889999988887653211 001111 134556666666654
No 144
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.70 E-value=0.00034 Score=81.83 Aligned_cols=147 Identities=13% Similarity=0.137 Sum_probs=84.6
Q ss_pred CCCCCCcchHHHHHHHHHcCCceEEEEEcCCCCcHHHHHHHHhcccccccc------CCCcEEEEEeCCCCCHHHHHHHH
Q 042541 166 VISPGLDVPLKELKMELFKDGRQFIVVSAPGGYGKTTLVQRLCKDDQVQGK------FKDDIFYVTVSKNPNVKAIVQKV 239 (695)
Q Consensus 166 ~~~vGr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~------f~~~~~wv~~~~~~~~~~~~~~i 239 (695)
+.++||+.++.++++.|......-+.++|++|+|||++|+.++. ++... ....++.++++.-.
T Consensus 178 ~~vigr~~ei~~~i~iL~r~~~~n~lL~G~pGvGKT~l~~~la~--~i~~~~vp~~l~~~~~~~l~l~~l~--------- 246 (857)
T PRK10865 178 DPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQ--RIINGEVPEGLKGRRVLALDMGALV--------- 246 (857)
T ss_pred CcCCCCHHHHHHHHHHHhcCCcCceEEECCCCCCHHHHHHHHHH--HhhcCCCchhhCCCEEEEEehhhhh---------
Confidence 45799999999999999866666777999999999999999987 33221 12334444443210
Q ss_pred HHhcCCCCCCCCChHHHHHHHHHHHHhc--CCCcEEEEEeCCCCCCh--------HHHhhhccCC-CC-CEEEE-EcCCC
Q 042541 240 LHHKGYPVPEFQTDEAAINDLERFFKQM--RIEAILLVLDDVWPGSE--------SLLQKLGFQL-PD-YKILV-TSRSE 306 (695)
Q Consensus 240 ~~~l~~~~~~~~~~~~~~~~l~~~~~~l--~~~~~LlVlDdv~~~~~--------~~~~~l~~~~-~g-s~iiv-TtR~~ 306 (695)
... ....+....+..+++.+ .+++.+|++|++..... ..-..+.+.. .| -++|- ||..+
T Consensus 247 -ag~-------~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l~~g~l~~IgaTt~~e 318 (857)
T PRK10865 247 -AGA-------KYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALARGELHCVGATTLDE 318 (857)
T ss_pred -hcc-------chhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccchhHHHHhcchhhcCCCeEEEcCCCHH
Confidence 000 01112233455555332 35789999999854321 0111122221 23 45554 44443
Q ss_pred CC-----------CCCCeEecCCCChHHHHHHHHHhc
Q 042541 307 FP-----------QFGSVHYLKPLTYEAARTLFLHSA 332 (695)
Q Consensus 307 ~~-----------~~~~~~~l~~L~~~ea~~Lf~~~~ 332 (695)
.. .. ..+.+..-+.++...++....
T Consensus 319 ~r~~~~~d~al~rRf-~~i~v~eP~~~~~~~iL~~l~ 354 (857)
T PRK10865 319 YRQYIEKDAALERRF-QKVFVAEPSVEDTIAILRGLK 354 (857)
T ss_pred HHHHhhhcHHHHhhC-CEEEeCCCCHHHHHHHHHHHh
Confidence 10 11 155666668888888886543
No 145
>CHL00181 cbbX CbbX; Provisional
Probab=97.67 E-value=0.0013 Score=66.70 Aligned_cols=148 Identities=16% Similarity=0.138 Sum_probs=78.9
Q ss_pred CCCCCcchHHHHHHHH---H-----c-------CCceEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCCCCC
Q 042541 167 ISPGLDVPLKELKMEL---F-----K-------DGRQFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSKNPN 231 (695)
Q Consensus 167 ~~vGr~~~~~~l~~~L---~-----~-------~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~~~~ 231 (695)
.++|.+..+++|.++. . . .....+.++|++|+||||+|+.+++...-.+.-.. .-|+.++.
T Consensus 24 ~l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~-~~~~~v~~--- 99 (287)
T CHL00181 24 ELVGLAPVKTRIREIAALLLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKK-GHLLTVTR--- 99 (287)
T ss_pred hcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCC-CceEEecH---
Confidence 3578777666554442 1 0 11335889999999999999999763111111111 11444442
Q ss_pred HHHHHHHHHHhcCCCCCCCCChHHHHHHHHHHHHhcCCCcEEEEEeCCCCC---------ChH----HHhhhccCCCCCE
Q 042541 232 VKAIVQKVLHHKGYPVPEFQTDEAAINDLERFFKQMRIEAILLVLDDVWPG---------SES----LLQKLGFQLPDYK 298 (695)
Q Consensus 232 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~~~LlVlDdv~~~---------~~~----~~~~l~~~~~gs~ 298 (695)
.++.... .+.. . ......++... .-+|++|++... ... +...+.....+..
T Consensus 100 -~~l~~~~---~g~~------~----~~~~~~l~~a~--ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~ 163 (287)
T CHL00181 100 -DDLVGQY---IGHT------A----PKTKEVLKKAM--GGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLV 163 (287)
T ss_pred -HHHHHHH---hccc------h----HHHHHHHHHcc--CCEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEE
Confidence 1222221 1110 0 11233443222 359999999642 111 2222323334566
Q ss_pred EEEEcCCCC------------CCCCCeEecCCCChHHHHHHHHHhccC
Q 042541 299 ILVTSRSEF------------PQFGSVHYLKPLTYEAARTLFLHSANL 334 (695)
Q Consensus 299 iivTtR~~~------------~~~~~~~~l~~L~~~ea~~Lf~~~~~~ 334 (695)
||+++.... ......+.+++++.+|..+++...+..
T Consensus 164 vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el~~I~~~~l~~ 211 (287)
T CHL00181 164 VIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEELLQIAKIMLEE 211 (287)
T ss_pred EEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHHHHHHHHHHHH
Confidence 767664321 123347899999999999988877643
No 146
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.67 E-value=0.007 Score=65.40 Aligned_cols=146 Identities=18% Similarity=0.208 Sum_probs=87.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCCCCCHHHHHHHHHHhcCCCCCCCCChHHHHHHHHHHHHhc
Q 042541 188 QFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSKNPNVKAIVQKVLHHKGYPVPEFQTDEAAINDLERFFKQM 267 (695)
Q Consensus 188 ~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~~l 267 (695)
.-+.|+|+.|+|||+|++.+++ .+... ...+++++. ..+...+...+... ..+.+. ..+
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~--~l~~~-~~~v~yi~~------~~f~~~~~~~l~~~---------~~~~f~---~~~ 200 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVH--ALRES-GGKILYVRS------ELFTEHLVSAIRSG---------EMQRFR---QFY 200 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHH--HHHHc-CCCEEEeeH------HHHHHHHHHHHhcc---------hHHHHH---HHc
Confidence 5688999999999999999998 34322 233666653 34445555554321 011122 222
Q ss_pred CCCcEEEEEeCCCCCCh------HHHhhhcc-CCCCCEEEEEcCCCC-------------CCCCCeEecCCCChHHHHHH
Q 042541 268 RIEAILLVLDDVWPGSE------SLLQKLGF-QLPDYKILVTSRSEF-------------PQFGSVHYLKPLTYEAARTL 327 (695)
Q Consensus 268 ~~~~~LlVlDdv~~~~~------~~~~~l~~-~~~gs~iivTtR~~~-------------~~~~~~~~l~~L~~~ea~~L 327 (695)
...-+|++||+..... .+...+.. ...|..||+||.... ...|..+.+.+++.++-..+
T Consensus 201 -~~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~i 279 (445)
T PRK12422 201 -RNVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSF 279 (445)
T ss_pred -ccCCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHH
Confidence 2345888999854321 12222211 124667888886531 12245889999999999999
Q ss_pred HHHhccCCCCCCCCCchHHHHHHHHhcCCch
Q 042541 328 FLHSANLQDGNSYIPDENIVSKILRACKGCP 358 (695)
Q Consensus 328 f~~~~~~~~~~~~~~~~~~~~~I~~~c~G~P 358 (695)
+.+.+..... .-.+++..-|++.+.|.-
T Consensus 280 L~~k~~~~~~---~l~~evl~~la~~~~~di 307 (445)
T PRK12422 280 LERKAEALSI---RIEETALDFLIEALSSNV 307 (445)
T ss_pred HHHHHHHcCC---CCCHHHHHHHHHhcCCCH
Confidence 9887754322 123667777888777543
No 147
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=97.67 E-value=0.0021 Score=70.04 Aligned_cols=150 Identities=17% Similarity=0.157 Sum_probs=93.2
Q ss_pred CCCCCcchHHHHHHHHH------cCCceEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCCCCCHHHHHHHHH
Q 042541 167 ISPGLDVPLKELKMELF------KDGRQFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSKNPNVKAIVQKVL 240 (695)
Q Consensus 167 ~~vGr~~~~~~l~~~L~------~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~~~~~~~~~~~i~ 240 (695)
.-+|.++-.++|.+++. +-+.++++.+|++|||||++|+.++. .+...| +-++++.-.+..+|-..=-
T Consensus 412 DHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~--ALnRkF----fRfSvGG~tDvAeIkGHRR 485 (906)
T KOG2004|consen 412 DHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIAR--ALNRKF----FRFSVGGMTDVAEIKGHRR 485 (906)
T ss_pred cccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHH--HhCCce----EEEeccccccHHhhcccce
Confidence 34999999999999987 23468999999999999999999987 454444 3567777766665532111
Q ss_pred HhcCCCCCCCCChHHHHHHHHHHHHhcCCCcEEEEEeCCCCCC--------hHHHhhhccCC-------------CCCEE
Q 042541 241 HHKGYPVPEFQTDEAAINDLERFFKQMRIEAILLVLDDVWPGS--------ESLLQKLGFQL-------------PDYKI 299 (695)
Q Consensus 241 ~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~~~LlVlDdv~~~~--------~~~~~~l~~~~-------------~gs~i 299 (695)
..+|.. . .++-+-++..+..+=|+.+|.|+... ..+++-+.+-. .=|+|
T Consensus 486 TYVGAM------P----GkiIq~LK~v~t~NPliLiDEvDKlG~g~qGDPasALLElLDPEQNanFlDHYLdVp~DLSkV 555 (906)
T KOG2004|consen 486 TYVGAM------P----GKIIQCLKKVKTENPLILIDEVDKLGSGHQGDPASALLELLDPEQNANFLDHYLDVPVDLSKV 555 (906)
T ss_pred eeeccC------C----hHHHHHHHhhCCCCceEEeehhhhhCCCCCCChHHHHHHhcChhhccchhhhccccccchhhe
Confidence 112111 1 12333344556777899999986432 11333332211 12677
Q ss_pred EEE-cCCC-CCC------CCCeEecCCCChHHHHHHHHHhc
Q 042541 300 LVT-SRSE-FPQ------FGSVHYLKPLTYEAARTLFLHSA 332 (695)
Q Consensus 300 ivT-tR~~-~~~------~~~~~~l~~L~~~ea~~Lf~~~~ 332 (695)
++. |-+. ... --..+++.+...+|-.++-.++.
T Consensus 556 LFicTAN~idtIP~pLlDRMEvIelsGYv~eEKv~IA~~yL 596 (906)
T KOG2004|consen 556 LFICTANVIDTIPPPLLDRMEVIELSGYVAEEKVKIAERYL 596 (906)
T ss_pred EEEEeccccccCChhhhhhhheeeccCccHHHHHHHHHHhh
Confidence 653 3332 111 12388999999999888777654
No 148
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.64 E-value=1.9e-05 Score=89.28 Aligned_cols=61 Identities=15% Similarity=0.360 Sum_probs=28.3
Q ss_pred CCCCcEEEEcccCCCCcccCcccccccCCCCcEEEeccCCCCCcccccccccccEEeeccccC
Q 042541 573 MDELKVLIVTNYGFSPAELNNFRVLSALSKLKKIRLEHVSLPNSLATVRMNHLQKVSLVMCNV 635 (695)
Q Consensus 573 l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~lp~i~~l~~L~~L~l~~~~i 635 (695)
+|+|++|.+.+-.+....... ...+++||..||+++++++.+.++++|++|+.|.+++=.+
T Consensus 147 LPsL~sL~i~~~~~~~~dF~~--lc~sFpNL~sLDIS~TnI~nl~GIS~LknLq~L~mrnLe~ 207 (699)
T KOG3665|consen 147 LPSLRSLVISGRQFDNDDFSQ--LCASFPNLRSLDISGTNISNLSGISRLKNLQVLSMRNLEF 207 (699)
T ss_pred CcccceEEecCceecchhHHH--HhhccCccceeecCCCCccCcHHHhccccHHHHhccCCCC
Confidence 455555555543332221111 1334555555555555555444455555555555544433
No 149
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=97.63 E-value=0.00056 Score=74.69 Aligned_cols=151 Identities=17% Similarity=0.140 Sum_probs=93.7
Q ss_pred CCCCCCcchHHHHHHHHH------cCCceEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCCCCCHHHHHHHH
Q 042541 166 VISPGLDVPLKELKMELF------KDGRQFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSKNPNVKAIVQKV 239 (695)
Q Consensus 166 ~~~vGr~~~~~~l~~~L~------~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~~~~~~~~~~~i 239 (695)
.+-+|.++..++|+++|. .-..+++++||++|+|||+|++.++. .+...| +-++++...+..++-..=
T Consensus 323 ~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~--al~Rkf----vR~sLGGvrDEAEIRGHR 396 (782)
T COG0466 323 KDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAK--ALGRKF----VRISLGGVRDEAEIRGHR 396 (782)
T ss_pred ccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHH--HhCCCE----EEEecCccccHHHhcccc
Confidence 344999999999999987 22358999999999999999999997 555554 255666666655542111
Q ss_pred HHhcCCCCCCCCChHHHHHHHHHHHHhcCCCcEEEEEeCCCCCCh--------HHHhhhccCCC-------------CCE
Q 042541 240 LHHKGYPVPEFQTDEAAINDLERFFKQMRIEAILLVLDDVWPGSE--------SLLQKLGFQLP-------------DYK 298 (695)
Q Consensus 240 ~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~~~LlVlDdv~~~~~--------~~~~~l~~~~~-------------gs~ 298 (695)
-..+|.- . .++-+-+...+.++=+++||.++.... .+++-+.+-.+ =|+
T Consensus 397 RTYIGam------P----GrIiQ~mkka~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~ 466 (782)
T COG0466 397 RTYIGAM------P----GKIIQGMKKAGVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSK 466 (782)
T ss_pred ccccccC------C----hHHHHHHHHhCCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchhh
Confidence 1111111 1 112222233467788999999865431 13343333111 144
Q ss_pred EE-EEcCCCCC-CC------CCeEecCCCChHHHHHHHHHhc
Q 042541 299 IL-VTSRSEFP-QF------GSVHYLKPLTYEAARTLFLHSA 332 (695)
Q Consensus 299 ii-vTtR~~~~-~~------~~~~~l~~L~~~ea~~Lf~~~~ 332 (695)
|+ |||-+... .. -.++++.+.+++|-.++-+++.
T Consensus 467 VmFiaTANsl~tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~L 508 (782)
T COG0466 467 VMFIATANSLDTIPAPLLDRMEVIRLSGYTEDEKLEIAKRHL 508 (782)
T ss_pred eEEEeecCccccCChHHhcceeeeeecCCChHHHHHHHHHhc
Confidence 54 45544422 11 2389999999999998887765
No 150
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.63 E-value=3.9e-05 Score=53.18 Aligned_cols=33 Identities=15% Similarity=0.302 Sum_probs=17.5
Q ss_pred cccEEeeccccCCcccccchhhhcccCCCccEEecccc
Q 042541 624 HLQKVSLVMCNVGQVFRNSTFRISDAFPNLLEMDIDYC 661 (695)
Q Consensus 624 ~L~~L~l~~~~i~~~~~~~~~~l~~~l~~L~~L~l~~c 661 (695)
+|++|++++|.|+.+|+.+. .|++|++|++++|
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~-----~l~~L~~L~l~~N 34 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELS-----NLPNLETLNLSNN 34 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGT-----TCTTSSEEEETSS
T ss_pred cceEEEccCCCCcccCchHh-----CCCCCCEEEecCC
Confidence 45666666666665554333 5556666666554
No 151
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.62 E-value=0.0013 Score=66.84 Aligned_cols=147 Identities=14% Similarity=0.106 Sum_probs=78.5
Q ss_pred CCCCCcchHHHHHHHHH---------c-----C-CceEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCCCCC
Q 042541 167 ISPGLDVPLKELKMELF---------K-----D-GRQFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSKNPN 231 (695)
Q Consensus 167 ~~vGr~~~~~~l~~~L~---------~-----~-~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~~~~ 231 (695)
.++|.+..+++|.++.. . . ...-+.++|++|+|||++|+.++....-......+ -++.++.
T Consensus 23 ~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~-~~v~v~~--- 98 (284)
T TIGR02880 23 ELIGLKPVKTRIREIAALLLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKG-HLVSVTR--- 98 (284)
T ss_pred hccCHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccc-eEEEecH---
Confidence 45887776666654322 0 0 12258899999999999998776521111111111 1444442
Q ss_pred HHHHHHHHHHhcCCCCCCCCChHHHHHHHHHHHHhcCCCcEEEEEeCCCCC---------Ch----HHHhhhccCCCCCE
Q 042541 232 VKAIVQKVLHHKGYPVPEFQTDEAAINDLERFFKQMRIEAILLVLDDVWPG---------SE----SLLQKLGFQLPDYK 298 (695)
Q Consensus 232 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~~~LlVlDdv~~~---------~~----~~~~~l~~~~~gs~ 298 (695)
.++ +..+.+. .. ......++... .-+|++|++... .. .++..+.....+.+
T Consensus 99 -~~l----~~~~~g~-----~~----~~~~~~~~~a~--~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~ 162 (284)
T TIGR02880 99 -DDL----VGQYIGH-----TA----PKTKEILKRAM--GGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLV 162 (284)
T ss_pred -HHH----hHhhccc-----ch----HHHHHHHHHcc--CcEEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEE
Confidence 122 2222111 11 12334443332 368999998632 01 12233333334566
Q ss_pred EEEEcCCCC------------CCCCCeEecCCCChHHHHHHHHHhcc
Q 042541 299 ILVTSRSEF------------PQFGSVHYLKPLTYEAARTLFLHSAN 333 (695)
Q Consensus 299 iivTtR~~~------------~~~~~~~~l~~L~~~ea~~Lf~~~~~ 333 (695)
||+++.... ......+.+++++.+|-.+++...+.
T Consensus 163 vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~~I~~~~l~ 209 (284)
T TIGR02880 163 VILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELLVIAGLMLK 209 (284)
T ss_pred EEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHHHHHHHHHH
Confidence 777664321 11234789999999999999887653
No 152
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.62 E-value=0.00072 Score=73.38 Aligned_cols=151 Identities=14% Similarity=0.179 Sum_probs=84.7
Q ss_pred CCCCCCcchHHHHHHHHHc-------------CCceEEEEEcCCCCcHHHHHHHHhccccccccC----CCcEEEEEeCC
Q 042541 166 VISPGLDVPLKELKMELFK-------------DGRQFIVVSAPGGYGKTTLVQRLCKDDQVQGKF----KDDIFYVTVSK 228 (695)
Q Consensus 166 ~~~vGr~~~~~~l~~~L~~-------------~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f----~~~~~wv~~~~ 228 (695)
..+.|.+..++++.+.+.. ..++-+.++|++|+|||++|+.+++. +...+ .....++++..
T Consensus 182 ~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~e--L~~~i~~~~~~~~~fl~v~~ 259 (512)
T TIGR03689 182 ADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANS--LAQRIGAETGDKSYFLNIKG 259 (512)
T ss_pred HHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHh--hccccccccCCceeEEeccc
Confidence 4567899999998887641 12456899999999999999999983 33221 11234555543
Q ss_pred CCCHHHHHHHHHHhcCCCCCCCCChHHHHHHHHHHHH--hcCCCcEEEEEeCCCCCC---------h---HHHhhhcc--
Q 042541 229 NPNVKAIVQKVLHHKGYPVPEFQTDEAAINDLERFFK--QMRIEAILLVLDDVWPGS---------E---SLLQKLGF-- 292 (695)
Q Consensus 229 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~--~l~~~~~LlVlDdv~~~~---------~---~~~~~l~~-- 292 (695)
. ++ +....+ ..+.....+..... ...+++++++||+++... + ..+..+..
T Consensus 260 ~----eL----l~kyvG------ete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~L 325 (512)
T TIGR03689 260 P----EL----LNKYVG------ETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSEL 325 (512)
T ss_pred h----hh----cccccc------hHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHh
Confidence 2 11 111100 11111112211111 113578999999996421 0 01122211
Q ss_pred -C---CCCCEEEEEcCCCC------C---CCCCeEecCCCChHHHHHHHHHhc
Q 042541 293 -Q---LPDYKILVTSRSEF------P---QFGSVHYLKPLTYEAARTLFLHSA 332 (695)
Q Consensus 293 -~---~~gs~iivTtR~~~------~---~~~~~~~l~~L~~~ea~~Lf~~~~ 332 (695)
+ ..+..||.||.... . .....++++..+.++..++|..+.
T Consensus 326 Dgl~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l 378 (512)
T TIGR03689 326 DGVESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYL 378 (512)
T ss_pred cccccCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHh
Confidence 1 12334555554431 1 223368999999999999998876
No 153
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.60 E-value=0.00033 Score=82.31 Aligned_cols=148 Identities=14% Similarity=0.125 Sum_probs=86.3
Q ss_pred CCCCCCcchHHHHHHHHHcCCceEEEEEcCCCCcHHHHHHHHhcccccccc------CCCcEEEEEeCCCCCHHHHHHHH
Q 042541 166 VISPGLDVPLKELKMELFKDGRQFIVVSAPGGYGKTTLVQRLCKDDQVQGK------FKDDIFYVTVSKNPNVKAIVQKV 239 (695)
Q Consensus 166 ~~~vGr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~------f~~~~~wv~~~~~~~~~~~~~~i 239 (695)
+.++||+.++.++++.|......-+.++|++|+|||++|..+++ ++... ....++.++++. +
T Consensus 173 ~~~igr~~ei~~~~~~l~r~~~~n~lL~G~pGvGKT~l~~~la~--~i~~~~~p~~l~~~~~~~l~~~~----------l 240 (852)
T TIGR03346 173 DPVIGRDEEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQ--RIVNGDVPESLKNKRLLALDMGA----------L 240 (852)
T ss_pred CcCCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHH--HHhccCCchhhcCCeEEEeeHHH----------H
Confidence 45799999999999999866656677999999999999999887 33221 122233333211 1
Q ss_pred HHhcCCCCCCCCChHHHHHHHHHHHHhc--CCCcEEEEEeCCCCCCh--------HHHhhhccCC-CC-CEEEE-EcCCC
Q 042541 240 LHHKGYPVPEFQTDEAAINDLERFFKQM--RIEAILLVLDDVWPGSE--------SLLQKLGFQL-PD-YKILV-TSRSE 306 (695)
Q Consensus 240 ~~~l~~~~~~~~~~~~~~~~l~~~~~~l--~~~~~LlVlDdv~~~~~--------~~~~~l~~~~-~g-s~iiv-TtR~~ 306 (695)
+... . ...+....+..+++.+ .+++.+|++|++..... .....+.+.. .| -++|- ||...
T Consensus 241 ~a~~--~-----~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~~g~i~~IgaTt~~e 313 (852)
T TIGR03346 241 IAGA--K-----YRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPALARGELHCIGATTLDE 313 (852)
T ss_pred hhcc--h-----hhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhhhcCceEEEEeCcHHH
Confidence 1000 0 1112234455555443 25689999999863320 1112222222 23 34444 44433
Q ss_pred C---C-------CCCCeEecCCCChHHHHHHHHHhc
Q 042541 307 F---P-------QFGSVHYLKPLTYEAARTLFLHSA 332 (695)
Q Consensus 307 ~---~-------~~~~~~~l~~L~~~ea~~Lf~~~~ 332 (695)
. . .--..+.++..+.++...++....
T Consensus 314 ~r~~~~~d~al~rRf~~i~v~~p~~~~~~~iL~~~~ 349 (852)
T TIGR03346 314 YRKYIEKDAALERRFQPVFVDEPTVEDTISILRGLK 349 (852)
T ss_pred HHHHhhcCHHHHhcCCEEEeCCCCHHHHHHHHHHHH
Confidence 1 1 001267888889999999887653
No 154
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=97.59 E-value=4.3e-05 Score=82.27 Aligned_cols=126 Identities=18% Similarity=0.247 Sum_probs=61.7
Q ss_pred ceEEEEEEccCccccCChhhcCCCCCcEEEEcccCCCCcccCcccccccCCCCcEEEeccCCCCCcc-cccccccccEEe
Q 042541 551 EVKVVVLNIRTKKYVLPDFLQKMDELKVLIVTNYGFSPAELNNFRVLSALSKLKKIRLEHVSLPNSL-ATVRMNHLQKVS 629 (695)
Q Consensus 551 ~l~~L~l~~~~~~~~~p~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~lp-~i~~l~~L~~L~ 629 (695)
+|+.|.+..+.. ..+|..+..+++|+.|++.+|.... ++ +..+.+++|+.|++++|.+..+| .++.+.+|++|.
T Consensus 141 nL~~L~l~~N~i-~~l~~~~~~l~~L~~L~l~~N~l~~--l~--~~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~ 215 (394)
T COG4886 141 NLKELDLSDNKI-ESLPSPLRNLPNLKNLDLSFNDLSD--LP--KLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELD 215 (394)
T ss_pred hcccccccccch-hhhhhhhhccccccccccCCchhhh--hh--hhhhhhhhhhheeccCCccccCchhhhhhhhhhhhh
Confidence 455555444322 2233344555555555555554321 00 00124445555555555555555 434444455555
Q ss_pred eccc-----------------------cCCcccccchhhhcccCCCccEEecccccccccCchhhcCCCCCceeeccccc
Q 042541 630 LVMC-----------------------NVGQVFRNSTFRISDAFPNLLEMDIDYCNDLIELPDGLCDIVSMEKLRITNCH 686 (695)
Q Consensus 630 l~~~-----------------------~i~~~~~~~~~~l~~~l~~L~~L~l~~c~~l~~lP~~i~~L~~L~~L~l~~~~ 686 (695)
+++| .+..++.... .+++|+.|++++| .+..++. ++.+.+|++|+++++.
T Consensus 216 ~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~-----~l~~l~~L~~s~n-~i~~i~~-~~~~~~l~~L~~s~n~ 288 (394)
T COG4886 216 LSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIG-----NLSNLETLDLSNN-QISSISS-LGSLTNLRELDLSGNS 288 (394)
T ss_pred hcCCcceecchhhhhcccccccccCCceeeeccchhc-----cccccceeccccc-ccccccc-ccccCccCEEeccCcc
Confidence 5444 3222211111 5666777777763 4556665 7777777777777755
Q ss_pred CC
Q 042541 687 RL 688 (695)
Q Consensus 687 ~l 688 (695)
..
T Consensus 289 ~~ 290 (394)
T COG4886 289 LS 290 (394)
T ss_pred cc
Confidence 33
No 155
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.59 E-value=0.00083 Score=71.27 Aligned_cols=164 Identities=16% Similarity=0.185 Sum_probs=93.0
Q ss_pred CCCCCCcchHHHHHHHHH----c---------CCceEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCCCCCH
Q 042541 166 VISPGLDVPLKELKMELF----K---------DGRQFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSKNPNV 232 (695)
Q Consensus 166 ~~~vGr~~~~~~l~~~L~----~---------~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~~~~~ 232 (695)
..+.|.+..+++|.+.+. . ..++-|.++|++|+|||+||+.+++. .... ++.+..
T Consensus 145 ~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~--l~~~------fi~i~~---- 212 (398)
T PTZ00454 145 SDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHH--TTAT------FIRVVG---- 212 (398)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh--cCCC------EEEEeh----
Confidence 356888888888887664 1 12577999999999999999999983 3222 222211
Q ss_pred HHHHHHHHHhcCCCCCCCCChHHHHHHHHHHH-HhcCCCcEEEEEeCCCCCC-----------hH-------HHhhhcc-
Q 042541 233 KAIVQKVLHHKGYPVPEFQTDEAAINDLERFF-KQMRIEAILLVLDDVWPGS-----------ES-------LLQKLGF- 292 (695)
Q Consensus 233 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~-~~l~~~~~LlVlDdv~~~~-----------~~-------~~~~l~~- 292 (695)
..+... .++ +....+..++ ......+.+|++|+++... .. ++..+..
T Consensus 213 s~l~~k---~~g----------e~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~ 279 (398)
T PTZ00454 213 SEFVQK---YLG----------EGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGF 279 (398)
T ss_pred HHHHHH---hcc----------hhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhcc
Confidence 111111 111 0112233444 2234678999999975321 00 1111111
Q ss_pred -CCCCCEEEEEcCCCC------C---CCCCeEecCCCChHHHHHHHHHhccCCCCCCCCCchHHHHHHHHhcCCch
Q 042541 293 -QLPDYKILVTSRSEF------P---QFGSVHYLKPLTYEAARTLFLHSANLQDGNSYIPDENIVSKILRACKGCP 358 (695)
Q Consensus 293 -~~~gs~iivTtR~~~------~---~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~G~P 358 (695)
...+..||+||.... . .....+.++..+.++..++|........... .-...++++.+.|+-
T Consensus 280 ~~~~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~----dvd~~~la~~t~g~s 351 (398)
T PTZ00454 280 DQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSE----EVDLEDFVSRPEKIS 351 (398)
T ss_pred CCCCCEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCc----ccCHHHHHHHcCCCC
Confidence 123567888887541 1 2233688888899988888886654322211 112456677777653
No 156
>PRK08116 hypothetical protein; Validated
Probab=97.59 E-value=0.0003 Score=70.68 Aligned_cols=99 Identities=17% Similarity=0.203 Sum_probs=57.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCCCCCHHHHHHHHHHhcCCCCCCCCChHHHHHHHHHHHHhc
Q 042541 188 QFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSKNPNVKAIVQKVLHHKGYPVPEFQTDEAAINDLERFFKQM 267 (695)
Q Consensus 188 ~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~~l 267 (695)
.-+.|+|..|+|||.||.++++ .+... ...++++++ .+++..+......... . . ...+++.+
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~--~l~~~-~~~v~~~~~------~~ll~~i~~~~~~~~~-----~-~---~~~~~~~l 176 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIAN--ELIEK-GVPVIFVNF------PQLLNRIKSTYKSSGK-----E-D---ENEIIRSL 176 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHH--HHHHc-CCeEEEEEH------HHHHHHHHHHHhcccc-----c-c---HHHHHHHh
Confidence 4588999999999999999998 44333 233667653 4456666555432110 0 0 11222334
Q ss_pred CCCcEEEEEeCCCC--CChHHHhh----hcc-CCCCCEEEEEcCC
Q 042541 268 RIEAILLVLDDVWP--GSESLLQK----LGF-QLPDYKILVTSRS 305 (695)
Q Consensus 268 ~~~~~LlVlDdv~~--~~~~~~~~----l~~-~~~gs~iivTtR~ 305 (695)
.+-. ||||||+.. ..+|.... +.. ...|..+||||..
T Consensus 177 ~~~d-lLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~ 220 (268)
T PRK08116 177 VNAD-LLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNL 220 (268)
T ss_pred cCCC-EEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 4334 899999943 33442211 111 1246679999963
No 157
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.58 E-value=0.0012 Score=72.59 Aligned_cols=151 Identities=13% Similarity=0.200 Sum_probs=92.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhccccccccC-CCcEEEEEeCCCCCHHHHHHHHHHhcCCCCCCCCChHHHHHHHHHHHHh
Q 042541 188 QFIVVSAPGGYGKTTLVQRLCKDDQVQGKF-KDDIFYVTVSKNPNVKAIVQKVLHHKGYPVPEFQTDEAAINDLERFFKQ 266 (695)
Q Consensus 188 ~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f-~~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~~ 266 (695)
..+.|+|..|+|||.|++.+++ .....+ ...++|++. .++...+...+... ....+. +.
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~--~a~~~~~g~~V~Yita------eef~~el~~al~~~---------~~~~f~---~~ 374 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGH--YARRLYPGTRVRYVSS------EEFTNEFINSIRDG---------KGDSFR---RR 374 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHH--HHHHhCCCCeEEEeeH------HHHHHHHHHHHHhc---------cHHHHH---HH
Confidence 4589999999999999999998 443322 233566654 33444554443211 011222 22
Q ss_pred cCCCcEEEEEeCCCCCCh------HHHhhhcc-CCCCCEEEEEcCCCC-------------CCCCCeEecCCCChHHHHH
Q 042541 267 MRIEAILLVLDDVWPGSE------SLLQKLGF-QLPDYKILVTSRSEF-------------PQFGSVHYLKPLTYEAART 326 (695)
Q Consensus 267 l~~~~~LlVlDdv~~~~~------~~~~~l~~-~~~gs~iivTtR~~~-------------~~~~~~~~l~~L~~~ea~~ 326 (695)
++ +-=+|||||+..... .+...+.. ...|..|||||.... ...+..+.+.+.+.+.-.+
T Consensus 375 y~-~~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~a 453 (617)
T PRK14086 375 YR-EMDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIA 453 (617)
T ss_pred hh-cCCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHH
Confidence 22 235889999965421 12222221 123567889888651 1234488999999999999
Q ss_pred HHHHhccCCCCCCCCCchHHHHHHHHhcCCchhHHH
Q 042541 327 LFLHSANLQDGNSYIPDENIVSKILRACKGCPLALK 362 (695)
Q Consensus 327 Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~ 362 (695)
++.+++..... .-.++++.-|++.+.+..-.+.
T Consensus 454 IL~kka~~r~l---~l~~eVi~yLa~r~~rnvR~Le 486 (617)
T PRK14086 454 ILRKKAVQEQL---NAPPEVLEFIASRISRNIRELE 486 (617)
T ss_pred HHHHHHHhcCC---CCCHHHHHHHHHhccCCHHHHH
Confidence 99988754322 2236788888888887654444
No 158
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.58 E-value=0.00029 Score=63.21 Aligned_cols=89 Identities=20% Similarity=0.180 Sum_probs=48.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCCCCCHHHHHHHHHHhcCCCCCCCCChHHHHHHHHHHHHhc
Q 042541 188 QFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSKNPNVKAIVQKVLHHKGYPVPEFQTDEAAINDLERFFKQM 267 (695)
Q Consensus 188 ~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~~l 267 (695)
..+.|+|++|+||||+++.++. ....... .+++++.+........... ....... ........ .....++..
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~---~~~~~~~~~ 74 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALAR--ELGPPGG-GVIYIDGEDILEEVLDQLL-LIIVGGK-KASGSGEL---RLRLALALA 74 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHh--ccCCCCC-CEEEECCEEccccCHHHHH-hhhhhcc-CCCCCHHH---HHHHHHHHH
Confidence 5789999999999999999987 3433322 2667766654332222211 0111111 11111222 222222222
Q ss_pred CCC-cEEEEEeCCCCCCh
Q 042541 268 RIE-AILLVLDDVWPGSE 284 (695)
Q Consensus 268 ~~~-~~LlVlDdv~~~~~ 284 (695)
+.. ..++++|++.....
T Consensus 75 ~~~~~~viiiDei~~~~~ 92 (148)
T smart00382 75 RKLKPDVLILDEITSLLD 92 (148)
T ss_pred HhcCCCEEEEECCcccCC
Confidence 332 59999999987654
No 159
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.57 E-value=0.00019 Score=63.87 Aligned_cols=68 Identities=22% Similarity=0.303 Sum_probs=40.8
Q ss_pred EEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCCCCCHHHHHHHHHHhcCCCCCCCCChHHHHHHHHHHHHhc-C
Q 042541 190 IVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSKNPNVKAIVQKVLHHKGYPVPEFQTDEAAINDLERFFKQM-R 268 (695)
Q Consensus 190 v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~~l-~ 268 (695)
|.|+|++|+|||++|+.+++. .. ..++.++.+...+. ...+....+...++.. .
T Consensus 1 ill~G~~G~GKT~l~~~la~~--l~----~~~~~i~~~~~~~~-------------------~~~~~~~~i~~~~~~~~~ 55 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQY--LG----FPFIEIDGSELISS-------------------YAGDSEQKIRDFFKKAKK 55 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHH--TT----SEEEEEETTHHHTS-------------------STTHHHHHHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHhh--cc----cccccccccccccc-------------------cccccccccccccccccc
Confidence 579999999999999999984 32 22445544431100 1122333444444222 2
Q ss_pred C-CcEEEEEeCCCCC
Q 042541 269 I-EAILLVLDDVWPG 282 (695)
Q Consensus 269 ~-~~~LlVlDdv~~~ 282 (695)
. ++.+|++||++..
T Consensus 56 ~~~~~vl~iDe~d~l 70 (132)
T PF00004_consen 56 SAKPCVLFIDEIDKL 70 (132)
T ss_dssp TSTSEEEEEETGGGT
T ss_pred cccceeeeeccchhc
Confidence 2 4899999998544
No 160
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=97.57 E-value=0.0017 Score=67.45 Aligned_cols=153 Identities=12% Similarity=0.084 Sum_probs=83.2
Q ss_pred CCC-CcchHHHHHHHHHcCC-ceEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCCCCCHHHHHHHHHHhcC-
Q 042541 168 SPG-LDVPLKELKMELFKDG-RQFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSKNPNVKAIVQKVLHHKG- 244 (695)
Q Consensus 168 ~vG-r~~~~~~l~~~L~~~~-~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~~~~~~~~~~~i~~~l~- 244 (695)
++| -+..++.+...+..+. .....++|+.|+||||+|..+.+.---...... . .+..+. ..+.+...-.
T Consensus 7 i~~~q~~~~~~L~~~~~~~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~-~---~cg~C~----~c~~~~~~~hp 78 (329)
T PRK08058 7 LTALQPVVVKMLQNSIAKNRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGV-E---PCGTCT----NCKRIDSGNHP 78 (329)
T ss_pred HHhhHHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCC-C---CCCcCH----HHHHHhcCCCC
Confidence 455 5556777777777665 456799999999999999888662100010000 0 000000 0000000000
Q ss_pred ---CCCCCCCChHHHHHHHHHHHHh-----cCCCcEEEEEeCCCCCChH----HHhhhccCCCCCEEEEEcCCCCC----
Q 042541 245 ---YPVPEFQTDEAAINDLERFFKQ-----MRIEAILLVLDDVWPGSES----LLQKLGFQLPDYKILVTSRSEFP---- 308 (695)
Q Consensus 245 ---~~~~~~~~~~~~~~~l~~~~~~-----l~~~~~LlVlDdv~~~~~~----~~~~l~~~~~gs~iivTtR~~~~---- 308 (695)
.-.+. ......+.++.+.+. ..+++-++|+|++...... +++.+....+++.+|++|.+...
T Consensus 79 D~~~i~~~--~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~~~~ll~T 156 (329)
T PRK08058 79 DVHLVAPD--GQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENKHQILPT 156 (329)
T ss_pred CEEEeccc--cccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCChHhCcHH
Confidence 00000 000112223332221 2456678999999776643 55666656667888887766521
Q ss_pred --CCCCeEecCCCChHHHHHHHHH
Q 042541 309 --QFGSVHYLKPLTYEAARTLFLH 330 (695)
Q Consensus 309 --~~~~~~~l~~L~~~ea~~Lf~~ 330 (695)
.-...+++.+++.++..+.+..
T Consensus 157 IrSRc~~i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 157 ILSRCQVVEFRPLPPESLIQRLQE 180 (329)
T ss_pred HHhhceeeeCCCCCHHHHHHHHHH
Confidence 1223899999999999888865
No 161
>PRK10536 hypothetical protein; Provisional
Probab=97.56 E-value=0.00027 Score=69.00 Aligned_cols=129 Identities=12% Similarity=0.106 Sum_probs=73.9
Q ss_pred CCCCCcchHHHHHHHHHcCCceEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCCCC----------CHHH--
Q 042541 167 ISPGLDVPLKELKMELFKDGRQFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSKNP----------NVKA-- 234 (695)
Q Consensus 167 ~~vGr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~~~----------~~~~-- 234 (695)
.+.+|......+..++.+. .+|.+.|+.|+|||+||.++..+.-..+.|.. + .+.-+.-. +..+
T Consensus 56 ~i~p~n~~Q~~~l~al~~~--~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~k-I-iI~RP~v~~ge~LGfLPG~~~eK~ 131 (262)
T PRK10536 56 PILARNEAQAHYLKAIESK--QLIFATGEAGCGKTWISAAKAAEALIHKDVDR-I-IVTRPVLQADEDLGFLPGDIAEKF 131 (262)
T ss_pred cccCCCHHHHHHHHHHhcC--CeEEEECCCCCCHHHHHHHHHHHHHhcCCeeE-E-EEeCCCCCchhhhCcCCCCHHHHH
Confidence 4567888888888888763 59999999999999999988764222344543 3 43321110 1211
Q ss_pred --HHHHHHHhcCCCCCCCCChHHHHHHHH-------HH--HHhcCCCcE---EEEEeCCCCCChHHHhhhc-cCCCCCEE
Q 042541 235 --IVQKVLHHKGYPVPEFQTDEAAINDLE-------RF--FKQMRIEAI---LLVLDDVWPGSESLLQKLG-FQLPDYKI 299 (695)
Q Consensus 235 --~~~~i~~~l~~~~~~~~~~~~~~~~l~-------~~--~~~l~~~~~---LlVlDdv~~~~~~~~~~l~-~~~~gs~i 299 (695)
.+.-+...+..-. .. ...+.+. ++ +.+++|+.+ ++|+|++.+........+. ..+.+|++
T Consensus 132 ~p~~~pi~D~L~~~~----~~-~~~~~~~~~~~~~Iei~~l~ymRGrtl~~~~vIvDEaqn~~~~~~k~~ltR~g~~sk~ 206 (262)
T PRK10536 132 APYFRPVYDVLVRRL----GA-SFMQYCLRPEIGKVEIAPFAYMRGRTFENAVVILDEAQNVTAAQMKMFLTRLGENVTV 206 (262)
T ss_pred HHHHHHHHHHHHHHh----Ch-HHHHHHHHhccCcEEEecHHHhcCCcccCCEEEEechhcCCHHHHHHHHhhcCCCCEE
Confidence 1222222221100 00 0111110 01 135577765 9999999888765444443 34578999
Q ss_pred EEEcC
Q 042541 300 LVTSR 304 (695)
Q Consensus 300 ivTtR 304 (695)
|+|--
T Consensus 207 v~~GD 211 (262)
T PRK10536 207 IVNGD 211 (262)
T ss_pred EEeCC
Confidence 98754
No 162
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.53 E-value=0.00018 Score=76.89 Aligned_cols=163 Identities=14% Similarity=0.154 Sum_probs=91.7
Q ss_pred CCCCCCcchHHHHHHHHH----c---------CCceEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCCCCCH
Q 042541 166 VISPGLDVPLKELKMELF----K---------DGRQFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSKNPNV 232 (695)
Q Consensus 166 ~~~vGr~~~~~~l~~~L~----~---------~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~~~~~ 232 (695)
..+.|.+..+++|.+.+. . ...+-|.++|++|+|||++|+.+++ .....| +.+...
T Consensus 183 ~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~--el~~~f------i~V~~s--- 251 (438)
T PTZ00361 183 ADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVAN--ETSATF------LRVVGS--- 251 (438)
T ss_pred HHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHH--hhCCCE------EEEecc---
Confidence 356789999988888764 1 1245688999999999999999998 343332 222211
Q ss_pred HHHHHHHHHhcCCCCCCCCChHHHHHHHHHHH-HhcCCCcEEEEEeCCCCCC-----------hH-------HHhhhcc-
Q 042541 233 KAIVQKVLHHKGYPVPEFQTDEAAINDLERFF-KQMRIEAILLVLDDVWPGS-----------ES-------LLQKLGF- 292 (695)
Q Consensus 233 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~-~~l~~~~~LlVlDdv~~~~-----------~~-------~~~~l~~- 292 (695)
++.. ...+ .....+..++ ....+.+.+++||+++... .. ++..+..
T Consensus 252 -eL~~----k~~G---------e~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~ 317 (438)
T PTZ00361 252 -ELIQ----KYLG---------DGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGF 317 (438)
T ss_pred -hhhh----hhcc---------hHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhh
Confidence 1111 1100 0112233333 2224678899999974211 00 1111111
Q ss_pred -CCCCCEEEEEcCCCC------C---CCCCeEecCCCChHHHHHHHHHhccCCCCCCCCCchHHHHHHHHhcCCc
Q 042541 293 -QLPDYKILVTSRSEF------P---QFGSVHYLKPLTYEAARTLFLHSANLQDGNSYIPDENIVSKILRACKGC 357 (695)
Q Consensus 293 -~~~gs~iivTtR~~~------~---~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~G~ 357 (695)
...+.+||+||.... . .....+.++..+.++..++|..+.......... ....++..+.|+
T Consensus 318 ~~~~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~dv----dl~~la~~t~g~ 388 (438)
T PTZ00361 318 DSRGDVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAEDV----DLEEFIMAKDEL 388 (438)
T ss_pred cccCCeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCCcCc----CHHHHHHhcCCC
Confidence 123567888776541 1 122378899999999999998765433221111 245566666554
No 163
>PRK12608 transcription termination factor Rho; Provisional
Probab=97.52 E-value=0.00047 Score=71.14 Aligned_cols=104 Identities=16% Similarity=0.167 Sum_probs=66.8
Q ss_pred HHHHHHHHHc-CCceEEEEEcCCCCcHHHHHHHHhccccccccC-CCcEEEEEeCCCC-CHHHHHHHHHHhcCCCCCCCC
Q 042541 175 LKELKMELFK-DGRQFIVVSAPGGYGKTTLVQRLCKDDQVQGKF-KDDIFYVTVSKNP-NVKAIVQKVLHHKGYPVPEFQ 251 (695)
Q Consensus 175 ~~~l~~~L~~-~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f-~~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~ 251 (695)
..++++.+.. +..+-+.|+|..|+|||||++.+++ .+.... +..++|+.+.+.. .+.++.+.+...+..+..+..
T Consensus 120 ~~RvID~l~PiGkGQR~LIvG~pGtGKTTLl~~la~--~i~~~~~dv~~vv~lIgER~~EV~df~~~i~~~Vvast~de~ 197 (380)
T PRK12608 120 SMRVVDLVAPIGKGQRGLIVAPPRAGKTVLLQQIAA--AVAANHPEVHLMVLLIDERPEEVTDMRRSVKGEVYASTFDRP 197 (380)
T ss_pred hHhhhhheeecCCCceEEEECCCCCCHHHHHHHHHH--HHHhcCCCceEEEEEecCCCCCHHHHHHHHhhhEEeecCCCC
Confidence 3456777662 3446779999999999999999887 343322 3435687887654 788899998887765443222
Q ss_pred ChH--HHHHHHHHHHHhc--CCCcEEEEEeCCC
Q 042541 252 TDE--AAINDLERFFKQM--RIEAILLVLDDVW 280 (695)
Q Consensus 252 ~~~--~~~~~l~~~~~~l--~~~~~LlVlDdv~ 280 (695)
... .....+.+..+++ .+++++||+|++.
T Consensus 198 ~~~~~~v~~~~~~~Ae~f~~~GkdVVLvlDslt 230 (380)
T PRK12608 198 PDEHIRVAELVLERAKRLVEQGKDVVILLDSLT 230 (380)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCcH
Confidence 211 1111222222222 5999999999984
No 164
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=97.51 E-value=0.0056 Score=62.87 Aligned_cols=169 Identities=13% Similarity=0.147 Sum_probs=95.5
Q ss_pred HHHHHHHHHcCC-ceEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCCCCCHHHHHHHHHHhcCCC-----CC
Q 042541 175 LKELKMELFKDG-RQFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSKNPNVKAIVQKVLHHKGYP-----VP 248 (695)
Q Consensus 175 ~~~l~~~L~~~~-~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~~~~~~~~~~~i~~~l~~~-----~~ 248 (695)
-+.+...+..+. ..-..++|+.|+||+++|..++..---...... . .++.+. ..+.+... ..+ .+
T Consensus 11 ~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~-~---~Cg~C~----sC~~~~~g-~HPD~~~i~p 81 (325)
T PRK06871 11 YQQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGD-Q---PCGQCH----SCHLFQAG-NHPDFHILEP 81 (325)
T ss_pred HHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCC-C---CCCCCH----HHHHHhcC-CCCCEEEEcc
Confidence 456666666655 456779999999999999988762100010000 0 001110 00011000 000 00
Q ss_pred CCCChHHHHHHHHHHHHh-----cCCCcEEEEEeCCCCCChH----HHhhhccCCCCCEEEEEcCCCCCCC------CCe
Q 042541 249 EFQTDEAAINDLERFFKQ-----MRIEAILLVLDDVWPGSES----LLQKLGFQLPDYKILVTSRSEFPQF------GSV 313 (695)
Q Consensus 249 ~~~~~~~~~~~l~~~~~~-----l~~~~~LlVlDdv~~~~~~----~~~~l~~~~~gs~iivTtR~~~~~~------~~~ 313 (695)
. ....-.+++++++.+. ..+++-++|+|+++..... +++.+-...+++.+|++|.+...-. ...
T Consensus 82 ~-~~~~I~id~iR~l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~SRC~~ 160 (325)
T PRK06871 82 I-DNKDIGVDQVREINEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSRCQT 160 (325)
T ss_pred c-cCCCCCHHHHHHHHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHhhceE
Confidence 0 0001123333333322 2477778999999877643 6666766777888888877652211 238
Q ss_pred EecCCCChHHHHHHHHHhccCCCCCCCCCchHHHHHHHHhcCCchhHH
Q 042541 314 HYLKPLTYEAARTLFLHSANLQDGNSYIPDENIVSKILRACKGCPLAL 361 (695)
Q Consensus 314 ~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai 361 (695)
+.+.+++.++..+.+...... ....+...+..++|.|+.+
T Consensus 161 ~~~~~~~~~~~~~~L~~~~~~--------~~~~~~~~~~l~~g~p~~A 200 (325)
T PRK06871 161 WLIHPPEEQQALDWLQAQSSA--------EISEILTALRINYGRPLLA 200 (325)
T ss_pred EeCCCCCHHHHHHHHHHHhcc--------ChHHHHHHHHHcCCCHHHH
Confidence 999999999999888765311 1223667788999999643
No 165
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=97.51 E-value=0.001 Score=73.55 Aligned_cols=170 Identities=13% Similarity=0.160 Sum_probs=92.8
Q ss_pred CCCCCCcchHHHHHHHHH---c---------CCceEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCCCCCHH
Q 042541 166 VISPGLDVPLKELKMELF---K---------DGRQFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSKNPNVK 233 (695)
Q Consensus 166 ~~~vGr~~~~~~l~~~L~---~---------~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~~~~~~ 233 (695)
+.++|.+...+++.+.+. . ...+-+.++|++|+|||+||+.+++. .... ++.++..
T Consensus 55 ~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~--~~~~------~~~i~~~---- 122 (495)
T TIGR01241 55 KDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGE--AGVP------FFSISGS---- 122 (495)
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHH--cCCC------eeeccHH----
Confidence 456888877666655443 1 12345889999999999999999873 2111 3333211
Q ss_pred HHHHHHHHhcCCCCCCCCChHHHHHHHHHHH-HhcCCCcEEEEEeCCCCCC-----------h---HHHhhhcc------
Q 042541 234 AIVQKVLHHKGYPVPEFQTDEAAINDLERFF-KQMRIEAILLVLDDVWPGS-----------E---SLLQKLGF------ 292 (695)
Q Consensus 234 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~-~~l~~~~~LlVlDdv~~~~-----------~---~~~~~l~~------ 292 (695)
++.... .+. ....+..++ ......+++|++||++... . ..+..+..
T Consensus 123 ~~~~~~---~g~----------~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~ 189 (495)
T TIGR01241 123 DFVEMF---VGV----------GASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFG 189 (495)
T ss_pred HHHHHH---hcc----------cHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhcccc
Confidence 111111 010 112344444 3334667999999985421 0 11111111
Q ss_pred CCCCCEEEEEcCCCC------C---CCCCeEecCCCChHHHHHHHHHhccCCCCCCCCCchHHHHHHHHhcCCc-hhHHH
Q 042541 293 QLPDYKILVTSRSEF------P---QFGSVHYLKPLTYEAARTLFLHSANLQDGNSYIPDENIVSKILRACKGC-PLALK 362 (695)
Q Consensus 293 ~~~gs~iivTtR~~~------~---~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~G~-PLai~ 362 (695)
...+..||.||.... . .....+.++..+.++-.++|.......... .......+++.+.|. +--|.
T Consensus 190 ~~~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~----~~~~l~~la~~t~G~sgadl~ 265 (495)
T TIGR01241 190 TNTGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLA----PDVDLKAVARRTPGFSGADLA 265 (495)
T ss_pred CCCCeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCC----cchhHHHHHHhCCCCCHHHHH
Confidence 112345555665431 1 233478888889988888888766432221 122356788888874 33343
Q ss_pred HH
Q 042541 363 VV 364 (695)
Q Consensus 363 ~~ 364 (695)
.+
T Consensus 266 ~l 267 (495)
T TIGR01241 266 NL 267 (495)
T ss_pred HH
Confidence 33
No 166
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=97.50 E-value=0.0028 Score=73.80 Aligned_cols=44 Identities=25% Similarity=0.249 Sum_probs=36.4
Q ss_pred CCCCCCcchHHHHHHHHH------cCCceEEEEEcCCCCcHHHHHHHHhc
Q 042541 166 VISPGLDVPLKELKMELF------KDGRQFIVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 166 ~~~vGr~~~~~~l~~~L~------~~~~~vv~I~G~gGiGKTtLa~~~~~ 209 (695)
..++|.+..+++|.+++. ....+++.++|++|+|||++|+.+++
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~ 369 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAK 369 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 446899999999988765 12346899999999999999999987
No 167
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.49 E-value=0.00018 Score=75.04 Aligned_cols=120 Identities=16% Similarity=0.237 Sum_probs=75.4
Q ss_pred CCCceEEEEEEccCccccCChhhcCCCCCcEEEEcccCCCCcccCcccccccCCCCcEEEeccC-CCCCccccccccccc
Q 042541 548 QGPEVKVVVLNIRTKKYVLPDFLQKMDELKVLIVTNYGFSPAELNNFRVLSALSKLKKIRLEHV-SLPNSLATVRMNHLQ 626 (695)
Q Consensus 548 ~~~~l~~L~l~~~~~~~~~p~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~-~l~~lp~i~~l~~L~ 626 (695)
.|++++.|.++.+ ....+|. + -.+|+.|.+++|... ..++. .+ ..+|++|.+.+| .++.+| .+|+
T Consensus 50 ~~~~l~~L~Is~c-~L~sLP~-L--P~sLtsL~Lsnc~nL-tsLP~--~L--P~nLe~L~Ls~Cs~L~sLP-----~sLe 115 (426)
T PRK15386 50 EARASGRLYIKDC-DIESLPV-L--PNELTEITIENCNNL-TTLPG--SI--PEGLEKLTVCHCPEISGLP-----ESVR 115 (426)
T ss_pred HhcCCCEEEeCCC-CCcccCC-C--CCCCcEEEccCCCCc-ccCCc--hh--hhhhhheEccCcccccccc-----cccc
Confidence 4678889999877 4455562 1 236999999885432 12221 11 247999999998 677777 2355
Q ss_pred EEeecccc---CCcccccchhhh-------------cccC-CCccEEecccccccccCchhhcCCCCCceeecccc
Q 042541 627 KVSLVMCN---VGQVFRNSTFRI-------------SDAF-PNLLEMDIDYCNDLIELPDGLCDIVSMEKLRITNC 685 (695)
Q Consensus 627 ~L~l~~~~---i~~~~~~~~~~l-------------~~~l-~~L~~L~l~~c~~l~~lP~~i~~L~~L~~L~l~~~ 685 (695)
.|+++.+. +..+|++... | |..| ++|++|++++|..+ .+|..+. .+|+.|+++.|
T Consensus 116 ~L~L~~n~~~~L~~LPssLk~-L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~n 187 (426)
T PRK15386 116 SLEIKGSATDSIKNVPNGLTS-LSINSYNPENQARIDNLISPSLKTLSLTGCSNI-ILPEKLP--ESLQSITLHIE 187 (426)
T ss_pred eEEeCCCCCcccccCcchHhh-eeccccccccccccccccCCcccEEEecCCCcc-cCccccc--ccCcEEEeccc
Confidence 55565553 5555554421 1 1012 47999999998755 4665444 58999998875
No 168
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=97.49 E-value=0.0092 Score=61.13 Aligned_cols=157 Identities=16% Similarity=0.176 Sum_probs=94.9
Q ss_pred hHHHHHHHHHcCC-ceEEEEEcCCCCcHHHHHHHHhcccccc------------------ccCCCcEEEEEeCCCCCHHH
Q 042541 174 PLKELKMELFKDG-RQFIVVSAPGGYGKTTLVQRLCKDDQVQ------------------GKFKDDIFYVTVSKNPNVKA 234 (695)
Q Consensus 174 ~~~~l~~~L~~~~-~~vv~I~G~gGiGKTtLa~~~~~~~~~~------------------~~f~~~~~wv~~~~~~~~~~ 234 (695)
.-+++...+..+. ...+.++|+.|+||+++|..++..---. +..+. +.|+.-...
T Consensus 11 ~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD-~~~i~p~~~----- 84 (319)
T PRK06090 11 VWQNWKAGLDAGRIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPD-LHVIKPEKE----- 84 (319)
T ss_pred HHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCC-EEEEecCcC-----
Confidence 3456666666555 4678899999999999998886521000 01111 223221100
Q ss_pred HHHHHHHhcCCCCCCCCChHHHHHHHHHHHHh-----cCCCcEEEEEeCCCCCChH----HHhhhccCCCCCEEEEEcCC
Q 042541 235 IVQKVLHHKGYPVPEFQTDEAAINDLERFFKQ-----MRIEAILLVLDDVWPGSES----LLQKLGFQLPDYKILVTSRS 305 (695)
Q Consensus 235 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~~-----l~~~~~LlVlDdv~~~~~~----~~~~l~~~~~gs~iivTtR~ 305 (695)
...-.+++++++.+. ..++.-++|+|++...... +++.+....+++.+|++|.+
T Consensus 85 -----------------~~~I~vdqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~ 147 (319)
T PRK06090 85 -----------------GKSITVEQIRQCNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHN 147 (319)
T ss_pred -----------------CCcCCHHHHHHHHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECC
Confidence 000112222322221 2466679999999877643 66666666677888877766
Q ss_pred CCC------CCCCeEecCCCChHHHHHHHHHhccCCCCCCCCCchHHHHHHHHhcCCchhHHHHH
Q 042541 306 EFP------QFGSVHYLKPLTYEAARTLFLHSANLQDGNSYIPDENIVSKILRACKGCPLALKVV 364 (695)
Q Consensus 306 ~~~------~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~ 364 (695)
... .-...+.+.+++.+++.+.+.... . . .+..++..++|.|+.+..+
T Consensus 148 ~~~lLpTI~SRCq~~~~~~~~~~~~~~~L~~~~----~----~---~~~~~l~l~~G~p~~A~~~ 201 (319)
T PRK06090 148 QKRLLPTIVSRCQQWVVTPPSTAQAMQWLKGQG----I----T---VPAYALKLNMGSPLKTLAM 201 (319)
T ss_pred hhhChHHHHhcceeEeCCCCCHHHHHHHHHHcC----C----c---hHHHHHHHcCCCHHHHHHH
Confidence 521 112278999999999999886531 1 0 2457889999999876554
No 169
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=97.48 E-value=0.0025 Score=61.58 Aligned_cols=46 Identities=17% Similarity=0.094 Sum_probs=37.3
Q ss_pred CCCCCCCCcchHHHHHHHHH----cCCceEEEEEcCCCCcHHHHHHHHhc
Q 042541 164 PPVISPGLDVPLKELKMELF----KDGRQFIVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 164 ~~~~~vGr~~~~~~l~~~L~----~~~~~vv~I~G~gGiGKTtLa~~~~~ 209 (695)
.-+.++|.+.+.+.|++-.. .....-+.++|..|.|||++++++.+
T Consensus 25 ~l~~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~ 74 (249)
T PF05673_consen 25 RLDDLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLN 74 (249)
T ss_pred CHHHhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHH
Confidence 34578999999888876443 34466788999999999999999987
No 170
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.48 E-value=0.00045 Score=67.15 Aligned_cols=36 Identities=36% Similarity=0.520 Sum_probs=29.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEe
Q 042541 188 QFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTV 226 (695)
Q Consensus 188 ~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~ 226 (695)
-.++|+|..|+|||||+..+.. .....|.. +++++-
T Consensus 14 fr~viIG~sGSGKT~li~~lL~--~~~~~f~~-I~l~t~ 49 (241)
T PF04665_consen 14 FRMVIIGKSGSGKTTLIKSLLY--YLRHKFDH-IFLITP 49 (241)
T ss_pred ceEEEECCCCCCHHHHHHHHHH--hhcccCCE-EEEEec
Confidence 4678999999999999999987 57778865 766644
No 171
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=97.47 E-value=0.0044 Score=64.28 Aligned_cols=170 Identities=17% Similarity=0.165 Sum_probs=96.5
Q ss_pred hHHHHHHHHHcCC-ceEEEEEcCCCCcHHHHHHHHhccccc---cccCCCcE----EEEEeCCCCCHHHHHHHHHHhcCC
Q 042541 174 PLKELKMELFKDG-RQFIVVSAPGGYGKTTLVQRLCKDDQV---QGKFKDDI----FYVTVSKNPNVKAIVQKVLHHKGY 245 (695)
Q Consensus 174 ~~~~l~~~L~~~~-~~vv~I~G~gGiGKTtLa~~~~~~~~~---~~~f~~~~----~wv~~~~~~~~~~~~~~i~~~l~~ 245 (695)
.-+++...+.++. ..-+.++|+.|+||+++|..++..--- ...-.|+. -++..+..+|+..+
T Consensus 10 ~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i---------- 79 (334)
T PRK07993 10 DYEQLVGSYQAGRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTL---------- 79 (334)
T ss_pred HHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEE----------
Confidence 3466777776655 466789999999999999887652100 00001110 00000000010000
Q ss_pred CCCCCCChHHHHHHHHHHHH-----hcCCCcEEEEEeCCCCCChH----HHhhhccCCCCCEEEEEcCCCCCC------C
Q 042541 246 PVPEFQTDEAAINDLERFFK-----QMRIEAILLVLDDVWPGSES----LLQKLGFQLPDYKILVTSRSEFPQ------F 310 (695)
Q Consensus 246 ~~~~~~~~~~~~~~l~~~~~-----~l~~~~~LlVlDdv~~~~~~----~~~~l~~~~~gs~iivTtR~~~~~------~ 310 (695)
.++.....-.+++++++.+ ...+++-++|+|+++..... +++.+....+++.+|.+|.+...- -
T Consensus 80 -~p~~~~~~I~idqiR~l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIrSR 158 (334)
T PRK07993 80 -TPEKGKSSLGVDAVREVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLRSR 158 (334)
T ss_pred -ecccccccCCHHHHHHHHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhc
Confidence 0000000111233333332 22477889999999877643 666677777778888777765211 1
Q ss_pred CCeEecCCCChHHHHHHHHHhccCCCCCCCCCchHHHHHHHHhcCCchhHHH
Q 042541 311 GSVHYLKPLTYEAARTLFLHSANLQDGNSYIPDENIVSKILRACKGCPLALK 362 (695)
Q Consensus 311 ~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~ 362 (695)
...+.+.+++.+++.+.+..... ...+.+..++..++|.|....
T Consensus 159 Cq~~~~~~~~~~~~~~~L~~~~~--------~~~~~a~~~~~la~G~~~~Al 202 (334)
T PRK07993 159 CRLHYLAPPPEQYALTWLSREVT--------MSQDALLAALRLSAGAPGAAL 202 (334)
T ss_pred cccccCCCCCHHHHHHHHHHccC--------CCHHHHHHHHHHcCCCHHHHH
Confidence 22788999999999888865321 123447788999999996443
No 172
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.47 E-value=0.0025 Score=67.91 Aligned_cols=127 Identities=22% Similarity=0.194 Sum_probs=76.6
Q ss_pred hHHHHHHHHHcCCceEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCCCCCHHHHHHHHHHhcCCCCCCCCCh
Q 042541 174 PLKELKMELFKDGRQFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSKNPNVKAIVQKVLHHKGYPVPEFQTD 253 (695)
Q Consensus 174 ~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~ 253 (695)
-..++.+.+..... ++.|+|+-++||||+++.+.. ...+. +++++.-+......-
T Consensus 25 ~~~~l~~~~~~~~~-i~~i~GpR~~GKTtll~~l~~--~~~~~----~iy~~~~d~~~~~~~------------------ 79 (398)
T COG1373 25 LLPRLIKKLDLRPF-IILILGPRQVGKTTLLKLLIK--GLLEE----IIYINFDDLRLDRIE------------------ 79 (398)
T ss_pred hhHHHHhhcccCCc-EEEEECCccccHHHHHHHHHh--hCCcc----eEEEEecchhcchhh------------------
Confidence 34444444443323 999999999999999977665 23222 445554433211111
Q ss_pred HHHHHHHHHHHHhcCCCcEEEEEeCCCCCChH--HHhhhccCCCCCEEEEEcCCCC----------CCCCCeEecCCCCh
Q 042541 254 EAAINDLERFFKQMRIEAILLVLDDVWPGSES--LLQKLGFQLPDYKILVTSRSEF----------PQFGSVHYLKPLTY 321 (695)
Q Consensus 254 ~~~~~~l~~~~~~l~~~~~LlVlDdv~~~~~~--~~~~l~~~~~gs~iivTtR~~~----------~~~~~~~~l~~L~~ 321 (695)
..+.+..+.+.-..++.+++||.|....+| .+..+....+. +|++|+-+.. .+-+..+.+-||+.
T Consensus 80 --l~d~~~~~~~~~~~~~~yifLDEIq~v~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF 156 (398)
T COG1373 80 --LLDLLRAYIELKEREKSYIFLDEIQNVPDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPLSF 156 (398)
T ss_pred --HHHHHHHHHHhhccCCceEEEecccCchhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCceeEEECCCCH
Confidence 111122222111227899999999988877 34555555555 8888877662 22234889999999
Q ss_pred HHHHHHH
Q 042541 322 EAARTLF 328 (695)
Q Consensus 322 ~ea~~Lf 328 (695)
.|-..+.
T Consensus 157 ~Efl~~~ 163 (398)
T COG1373 157 REFLKLK 163 (398)
T ss_pred HHHHhhc
Confidence 9887654
No 173
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=97.44 E-value=6.8e-05 Score=80.72 Aligned_cols=133 Identities=19% Similarity=0.308 Sum_probs=90.1
Q ss_pred CCceEEEEEEccCccccCChhhcCCC-CCcEEEEcccCCCCcccCcccccccCCCCcEEEeccCCCCCcc-ccccccccc
Q 042541 549 GPEVKVVVLNIRTKKYVLPDFLQKMD-ELKVLIVTNYGFSPAELNNFRVLSALSKLKKIRLEHVSLPNSL-ATVRMNHLQ 626 (695)
Q Consensus 549 ~~~l~~L~l~~~~~~~~~p~~~~~l~-~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~lp-~i~~l~~L~ 626 (695)
.+.+..|.+..+ ....+|.....+. +|+.|++++|.+.. ++ ..+..+++|+.|++++|.+..+| ..+.++.|+
T Consensus 115 ~~~l~~L~l~~n-~i~~i~~~~~~~~~nL~~L~l~~N~i~~--l~--~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~ 189 (394)
T COG4886 115 LTNLTSLDLDNN-NITDIPPLIGLLKSNLKELDLSDNKIES--LP--SPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLN 189 (394)
T ss_pred ccceeEEecCCc-ccccCccccccchhhcccccccccchhh--hh--hhhhccccccccccCCchhhhhhhhhhhhhhhh
Confidence 356677766554 3345666666674 99999999887631 11 23788999999999999999999 777999999
Q ss_pred EEeeccccCCcccccchhhhcccCCCccEEecccc----------------------cccccCchhhcCCCCCceeeccc
Q 042541 627 KVSLVMCNVGQVFRNSTFRISDAFPNLLEMDIDYC----------------------NDLIELPDGLCDIVSMEKLRITN 684 (695)
Q Consensus 627 ~L~l~~~~i~~~~~~~~~~l~~~l~~L~~L~l~~c----------------------~~l~~lP~~i~~L~~L~~L~l~~ 684 (695)
.|++++|.+..+|+... .+..|++|.++++ +.+..+|..++.+++|+.|++++
T Consensus 190 ~L~ls~N~i~~l~~~~~-----~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~ 264 (394)
T COG4886 190 NLDLSGNKISDLPPEIE-----LLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSN 264 (394)
T ss_pred heeccCCccccCchhhh-----hhhhhhhhhhcCCcceecchhhhhcccccccccCCceeeeccchhccccccceecccc
Confidence 99999999999888642 2333555555543 22333345556666666666666
Q ss_pred ccCCCCCC
Q 042541 685 CHRLSALP 692 (695)
Q Consensus 685 ~~~l~~lP 692 (695)
|. +..++
T Consensus 265 n~-i~~i~ 271 (394)
T COG4886 265 NQ-ISSIS 271 (394)
T ss_pred cc-ccccc
Confidence 43 44443
No 174
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=97.44 E-value=0.005 Score=67.26 Aligned_cols=196 Identities=18% Similarity=0.186 Sum_probs=119.9
Q ss_pred CCCCCCCCcchHHHHHHHHH----c-CCceEEEEEcCCCCcHHHHHHHHhcccc------ccccCCCcEEEEEeCCCCCH
Q 042541 164 PPVISPGLDVPLKELKMELF----K-DGRQFIVVSAPGGYGKTTLVQRLCKDDQ------VQGKFKDDIFYVTVSKNPNV 232 (695)
Q Consensus 164 ~~~~~vGr~~~~~~l~~~L~----~-~~~~vv~I~G~gGiGKTtLa~~~~~~~~------~~~~f~~~~~wv~~~~~~~~ 232 (695)
.|..+-+|+.+..+|..++. . +..+.+-|.|.+|.|||..+..|.+.-. --..|+. + .|+.-.-..+
T Consensus 394 vp~sLpcRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~y-v-eINgm~l~~~ 471 (767)
T KOG1514|consen 394 VPESLPCRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDY-V-EINGLRLASP 471 (767)
T ss_pred ccccccchhHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccE-E-EEcceeecCH
Confidence 45567899999999988887 2 3356899999999999999999987322 1233543 2 4555555679
Q ss_pred HHHHHHHHHhcCCCCCCCCChHHHHHHHHHHHH--hcCCCcEEEEEeCCC---CCChHHH-hhhcc-CCCCCEEEEEcCC
Q 042541 233 KAIVQKVLHHKGYPVPEFQTDEAAINDLERFFK--QMRIEAILLVLDDVW---PGSESLL-QKLGF-QLPDYKILVTSRS 305 (695)
Q Consensus 233 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~--~l~~~~~LlVlDdv~---~~~~~~~-~~l~~-~~~gs~iivTtR~ 305 (695)
.++...|..++.+... .....++.|...+. .-+.+.+++++|+++ ...+.++ ..|.+ ..++||++|-+=.
T Consensus 472 ~~~Y~~I~~~lsg~~~---~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sKLvvi~Ia 548 (767)
T KOG1514|consen 472 REIYEKIWEALSGERV---TWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKNSKLVVIAIA 548 (767)
T ss_pred HHHHHHHHHhcccCcc---cHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcCCCCceEEEEec
Confidence 9999999999976543 33445555555542 224667899999863 3334433 34444 4578988775543
Q ss_pred CCC-------------CCC-CeEecCCCChHHHHHHHHHhccCCCCCCCCCchHHHHHHHHhcCCchhHHHHH
Q 042541 306 EFP-------------QFG-SVHYLKPLTYEAARTLFLHSANLQDGNSYIPDENIVSKILRACKGCPLALKVV 364 (695)
Q Consensus 306 ~~~-------------~~~-~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~ 364 (695)
... ..| ..+...|.++.+-.++...+..+.....+...+-+++.|+.-.|..-.|+.+.
T Consensus 549 NTmdlPEr~l~nrvsSRlg~tRi~F~pYth~qLq~Ii~~RL~~~~~f~~~aielvarkVAavSGDaRraldic 621 (767)
T KOG1514|consen 549 NTMDLPERLLMNRVSSRLGLTRICFQPYTHEQLQEIISARLKGLDAFENKAIELVARKVAAVSGDARRALDIC 621 (767)
T ss_pred ccccCHHHHhccchhhhccceeeecCCCCHHHHHHHHHHhhcchhhcchhHHHHHHHHHHhccccHHHHHHHH
Confidence 311 111 25667777777777777665543322111112334445555455444444443
No 175
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.44 E-value=0.0025 Score=68.15 Aligned_cols=163 Identities=13% Similarity=0.180 Sum_probs=95.1
Q ss_pred CCCCCCcchHHHHHHHHH---cC---------CceEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCCCCCHH
Q 042541 166 VISPGLDVPLKELKMELF---KD---------GRQFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSKNPNVK 233 (695)
Q Consensus 166 ~~~vGr~~~~~~l~~~L~---~~---------~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~~~~~~ 233 (695)
..+=|.+..+.++.+++. .+ .++=|.+||++|+|||.||+++++. .. +-++.++..
T Consensus 190 ~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAge--l~------vPf~~isAp---- 257 (802)
T KOG0733|consen 190 SDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGE--LG------VPFLSISAP---- 257 (802)
T ss_pred hhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhh--cC------CceEeecch----
Confidence 356788988888887765 22 2567899999999999999999983 22 324444432
Q ss_pred HHHHHHHHhcCCCCCCCCChHHHHHHHHHHH-HhcCCCcEEEEEeCCCCCCh---H--------HHhhhcc-------C-
Q 042541 234 AIVQKVLHHKGYPVPEFQTDEAAINDLERFF-KQMRIEAILLVLDDVWPGSE---S--------LLQKLGF-------Q- 293 (695)
Q Consensus 234 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~-~~l~~~~~LlVlDdv~~~~~---~--------~~~~l~~-------~- 293 (695)
+|+..+.+ +..+.+++++ +....-++++++|+++-... + +...+.. .
T Consensus 258 ----eivSGvSG---------ESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~ 324 (802)
T KOG0733|consen 258 ----EIVSGVSG---------ESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEK 324 (802)
T ss_pred ----hhhcccCc---------ccHHHHHHHHHHHhccCCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhcccccc
Confidence 23333322 1245677777 66678899999999865431 0 2222211 1
Q ss_pred CCCC-EEEE--EcCCCC-----CCCC---CeEecCCCChHHHHHHHHHhccCCCCCCCCCchHHHHHHHHhcCCc
Q 042541 294 LPDY-KILV--TSRSEF-----PQFG---SVHYLKPLTYEAARTLFLHSANLQDGNSYIPDENIVSKILRACKGC 357 (695)
Q Consensus 294 ~~gs-~iiv--TtR~~~-----~~~~---~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~G~ 357 (695)
..|- .++| |+|-.. ...| ..+.+.--+..+-.+++...+.+-...... ..++|++.+-|.
T Consensus 325 ~~g~~VlVIgATnRPDslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g~~----d~~qlA~lTPGf 395 (802)
T KOG0733|consen 325 TKGDPVLVIGATNRPDSLDPALRRAGRFDREICLGVPSETAREEILRIICRGLRLSGDF----DFKQLAKLTPGF 395 (802)
T ss_pred cCCCCeEEEecCCCCcccCHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCCCc----CHHHHHhcCCCc
Confidence 1132 3333 455432 2223 366777667776667776655433322222 256677777664
No 176
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.43 E-value=0.001 Score=74.19 Aligned_cols=48 Identities=21% Similarity=0.369 Sum_probs=39.7
Q ss_pred CCCCCCCCCCcchHHHHHHHHHcC-----CceEEEEEcCCCCcHHHHHHHHhc
Q 042541 162 PDPPVISPGLDVPLKELKMELFKD-----GRQFIVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 162 ~~~~~~~vGr~~~~~~l~~~L~~~-----~~~vv~I~G~gGiGKTtLa~~~~~ 209 (695)
|..-+.++|-+..++++..++... ..+++.|+|++|+||||+++.++.
T Consensus 80 P~~ldel~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~ 132 (637)
T TIGR00602 80 PETQHELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSK 132 (637)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 444567899999999999988732 246799999999999999999987
No 177
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.43 E-value=6e-06 Score=88.97 Aligned_cols=109 Identities=22% Similarity=0.251 Sum_probs=84.7
Q ss_pred cCChhhcCCCCCcEEEEcccCCCCcccCcccccccCCCCcEEEeccCCCCCcc--cccccccccEEeeccccCCcccccc
Q 042541 565 VLPDFLQKMDELKVLIVTNYGFSPAELNNFRVLSALSKLKKIRLEHVSLPNSL--ATVRMNHLQKVSLVMCNVGQVFRNS 642 (695)
Q Consensus 565 ~~p~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~lp--~i~~l~~L~~L~l~~~~i~~~~~~~ 642 (695)
.+.+++.-++.|+.|+|+.|.+.. ...+..|+.|++|||+.|.+..+| +...+. |+.|+|++|.++.+.. +
T Consensus 178 ~mD~SLqll~ale~LnLshNk~~~-----v~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~tL~g-i 250 (1096)
T KOG1859|consen 178 LMDESLQLLPALESLNLSHNKFTK-----VDNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALTTLRG-I 250 (1096)
T ss_pred hHHHHHHHHHHhhhhccchhhhhh-----hHHHHhcccccccccccchhccccccchhhhh-heeeeecccHHHhhhh-H
Confidence 344577778999999999988742 234788999999999999999999 554555 9999999998876533 3
Q ss_pred hhhhcccCCCccEEecccccccccCc--hhhcCCCCCceeeccccc
Q 042541 643 TFRISDAFPNLLEMDIDYCNDLIELP--DGLCDIVSMEKLRITNCH 686 (695)
Q Consensus 643 ~~~l~~~l~~L~~L~l~~c~~l~~lP--~~i~~L~~L~~L~l~~~~ 686 (695)
- +|.+|+.||+++| .+.... .-++.|..|+.|+|.||+
T Consensus 251 e-----~LksL~~LDlsyN-ll~~hseL~pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 251 E-----NLKSLYGLDLSYN-LLSEHSELEPLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred H-----hhhhhhccchhHh-hhhcchhhhHHHHHHHHHHHhhcCCc
Confidence 3 8999999999985 333322 126788999999999987
No 178
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.42 E-value=0.00034 Score=80.00 Aligned_cols=149 Identities=15% Similarity=0.183 Sum_probs=83.4
Q ss_pred CCCCCCcchHHHHHHHHHcCCceEEEEEcCCCCcHHHHHHHHhccc---cccccCCCcEEEEEeCCCCCHHHHHHHHHHh
Q 042541 166 VISPGLDVPLKELKMELFKDGRQFIVVSAPGGYGKTTLVQRLCKDD---QVQGKFKDDIFYVTVSKNPNVKAIVQKVLHH 242 (695)
Q Consensus 166 ~~~vGr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~~~~~~---~~~~~f~~~~~wv~~~~~~~~~~~~~~i~~~ 242 (695)
+.++||+.++.++++.|......-+.++|++|+|||++|+.+++.. .+...+....+|. + +.. .++.
T Consensus 186 ~~liGR~~ei~~~i~iL~r~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~-l----~~~----~lla- 255 (758)
T PRK11034 186 DPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYS-L----DIG----SLLA- 255 (758)
T ss_pred CcCcCCCHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEe-c----cHH----HHhc-
Confidence 3579999999999999986554556789999999999999988731 1111122213231 1 111 1111
Q ss_pred cCCCCCCCCChHHHHHHHHHHHHhc-CCCcEEEEEeCCCCC---------ChH---HHhhhccCCCCCEEEEEc-CCCC-
Q 042541 243 KGYPVPEFQTDEAAINDLERFFKQM-RIEAILLVLDDVWPG---------SES---LLQKLGFQLPDYKILVTS-RSEF- 307 (695)
Q Consensus 243 l~~~~~~~~~~~~~~~~l~~~~~~l-~~~~~LlVlDdv~~~---------~~~---~~~~l~~~~~gs~iivTt-R~~~- 307 (695)
+.. ...+....+..+++.+ +.++.+|++|++... ... .+..+.. ...-++|-+| +.+.
T Consensus 256 -G~~-----~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~-~g~i~vIgATt~~E~~ 328 (758)
T PRK11034 256 -GTK-----YRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLS-SGKIRVIGSTTYQEFS 328 (758)
T ss_pred -ccc-----hhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHh-CCCeEEEecCChHHHH
Confidence 000 0112223344444332 345789999998532 111 1222221 1223444444 3221
Q ss_pred ----------CCCCCeEecCCCChHHHHHHHHHhc
Q 042541 308 ----------PQFGSVHYLKPLTYEAARTLFLHSA 332 (695)
Q Consensus 308 ----------~~~~~~~~l~~L~~~ea~~Lf~~~~ 332 (695)
... ..+.+++.+.+++.+++....
T Consensus 329 ~~~~~D~AL~rRF-q~I~v~ePs~~~~~~IL~~~~ 362 (758)
T PRK11034 329 NIFEKDRALARRF-QKIDITEPSIEETVQIINGLK 362 (758)
T ss_pred HHhhccHHHHhhC-cEEEeCCCCHHHHHHHHHHHH
Confidence 111 278999999999999988643
No 179
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.40 E-value=2.6e-05 Score=84.31 Aligned_cols=83 Identities=19% Similarity=0.232 Sum_probs=62.6
Q ss_pred cccCCCCcEEEeccCCCCCcccccccccccEEeeccccCCcccccchhhhcccCCCccEEecccccccccCchhhcCCCC
Q 042541 597 LSALSKLKKIRLEHVSLPNSLATVRMNHLQKVSLVMCNVGQVFRNSTFRISDAFPNLLEMDIDYCNDLIELPDGLCDIVS 676 (695)
Q Consensus 597 l~~l~~L~~L~L~~~~l~~lp~i~~l~~L~~L~l~~~~i~~~~~~~~~~l~~~l~~L~~L~l~~c~~l~~lP~~i~~L~~ 676 (695)
+.-++.|+.|+|++|.++....+..|++|.+|||+.|.+..+|.-.-. .+. |+.|.+++| -+..+- ++.+|.+
T Consensus 183 Lqll~ale~LnLshNk~~~v~~Lr~l~~LkhLDlsyN~L~~vp~l~~~----gc~-L~~L~lrnN-~l~tL~-gie~Lks 255 (1096)
T KOG1859|consen 183 LQLLPALESLNLSHNKFTKVDNLRRLPKLKHLDLSYNCLRHVPQLSMV----GCK-LQLLNLRNN-ALTTLR-GIENLKS 255 (1096)
T ss_pred HHHHHHhhhhccchhhhhhhHHHHhcccccccccccchhccccccchh----hhh-heeeeeccc-HHHhhh-hHHhhhh
Confidence 344667888889888887655666788899999999988877653321 333 888888874 566664 6999999
Q ss_pred Cceeeccccc
Q 042541 677 MEKLRITNCH 686 (695)
Q Consensus 677 L~~L~l~~~~ 686 (695)
|++||++.|-
T Consensus 256 L~~LDlsyNl 265 (1096)
T KOG1859|consen 256 LYGLDLSYNL 265 (1096)
T ss_pred hhccchhHhh
Confidence 9999999864
No 180
>CHL00176 ftsH cell division protein; Validated
Probab=97.40 E-value=0.0044 Score=69.74 Aligned_cols=163 Identities=14% Similarity=0.180 Sum_probs=93.2
Q ss_pred CCCCCCcchHHHHHHHH---HcC---------CceEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCCCCCHH
Q 042541 166 VISPGLDVPLKELKMEL---FKD---------GRQFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSKNPNVK 233 (695)
Q Consensus 166 ~~~vGr~~~~~~l~~~L---~~~---------~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~~~~~~ 233 (695)
+.++|.++..+++.+.+ ..+ ..+-|.++|++|+|||+||+.+++. .. +-++.++..
T Consensus 183 ~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e--~~------~p~i~is~s---- 250 (638)
T CHL00176 183 RDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGE--AE------VPFFSISGS---- 250 (638)
T ss_pred HhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHH--hC------CCeeeccHH----
Confidence 45688887666665544 321 1456899999999999999999873 21 223333321
Q ss_pred HHHHHHHHhcCCCCCCCCChHHHHHHHHHHH-HhcCCCcEEEEEeCCCCCC-----------h---HHHhhhcc------
Q 042541 234 AIVQKVLHHKGYPVPEFQTDEAAINDLERFF-KQMRIEAILLVLDDVWPGS-----------E---SLLQKLGF------ 292 (695)
Q Consensus 234 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~-~~l~~~~~LlVlDdv~~~~-----------~---~~~~~l~~------ 292 (695)
++.... .+ .....+..++ ......+++|++||++... . ..+..+..
T Consensus 251 ~f~~~~---~g----------~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~ 317 (638)
T CHL00176 251 EFVEMF---VG----------VGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFK 317 (638)
T ss_pred HHHHHh---hh----------hhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhcccc
Confidence 111100 00 0123344445 4446788999999995431 1 11222221
Q ss_pred CCCCCEEEEEcCCC------CC---CCCCeEecCCCChHHHHHHHHHhccCCCCCCCCCchHHHHHHHHhcCCc
Q 042541 293 QLPDYKILVTSRSE------FP---QFGSVHYLKPLTYEAARTLFLHSANLQDGNSYIPDENIVSKILRACKGC 357 (695)
Q Consensus 293 ~~~gs~iivTtR~~------~~---~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~G~ 357 (695)
...+..||.||... .. .....+.++..+.++-.++++.++..... ........+++.+.|.
T Consensus 318 ~~~~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~----~~d~~l~~lA~~t~G~ 387 (638)
T CHL00176 318 GNKGVIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKL----SPDVSLELIARRTPGF 387 (638)
T ss_pred CCCCeeEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhccc----chhHHHHHHHhcCCCC
Confidence 12344566666543 11 23347888888999999999887654221 1233467788888873
No 181
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=97.40 E-value=0.017 Score=66.79 Aligned_cols=151 Identities=21% Similarity=0.157 Sum_probs=84.8
Q ss_pred CCCCCCcchHHHHHHHHHc------CCceEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCCCCCHHHHHHHH
Q 042541 166 VISPGLDVPLKELKMELFK------DGRQFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSKNPNVKAIVQKV 239 (695)
Q Consensus 166 ~~~vGr~~~~~~l~~~L~~------~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~~~~~~~~~~~i 239 (695)
...+|.+..+++|.++|.. ....++.++|++|+||||+|+.++. ..... .+-++++...+..++...-
T Consensus 322 ~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~--~l~~~----~~~i~~~~~~d~~~i~g~~ 395 (784)
T PRK10787 322 TDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAK--ATGRK----YVRMALGGVRDEAEIRGHR 395 (784)
T ss_pred hhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHH--HhCCC----EEEEEcCCCCCHHHhccch
Confidence 4569999999999988871 2356899999999999999999986 33222 2234455544443332221
Q ss_pred HHhcCCCCCCCCChHHHHHHHHHHHHhcCCCcEEEEEeCCCCCCh--------HHHhhhccC---------------CCC
Q 042541 240 LHHKGYPVPEFQTDEAAINDLERFFKQMRIEAILLVLDDVWPGSE--------SLLQKLGFQ---------------LPD 296 (695)
Q Consensus 240 ~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~~~LlVlDdv~~~~~--------~~~~~l~~~---------------~~g 296 (695)
....+. .+ ..+.+.+......+-+++||.++.... .++..+.+. ..+
T Consensus 396 ~~~~g~-~~---------G~~~~~l~~~~~~~~villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~ 465 (784)
T PRK10787 396 RTYIGS-MP---------GKLIQKMAKVGVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSD 465 (784)
T ss_pred hccCCC-CC---------cHHHHHHHhcCCCCCEEEEEChhhcccccCCCHHHHHHHHhccccEEEEecccccccccCCc
Confidence 111111 11 012222222222345788999854432 122222211 123
Q ss_pred CEEEEEcCCCCCC-----CCCeEecCCCChHHHHHHHHHhc
Q 042541 297 YKILVTSRSEFPQ-----FGSVHYLKPLTYEAARTLFLHSA 332 (695)
Q Consensus 297 s~iivTtR~~~~~-----~~~~~~l~~L~~~ea~~Lf~~~~ 332 (695)
.-+|.|+.+.... --..+++.+++.+|-.++.+++.
T Consensus 466 v~~i~TaN~~~i~~aLl~R~~ii~~~~~t~eek~~Ia~~~L 506 (784)
T PRK10787 466 VMFVATSNSMNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHL 506 (784)
T ss_pred eEEEEcCCCCCCCHHHhcceeeeecCCCCHHHHHHHHHHhh
Confidence 3444455433110 01278899999999888887765
No 182
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.36 E-value=0.015 Score=68.14 Aligned_cols=45 Identities=20% Similarity=0.245 Sum_probs=36.9
Q ss_pred CCCCCCCcchHHHHHHHHHc-------C--CceEEEEEcCCCCcHHHHHHHHhc
Q 042541 165 PVISPGLDVPLKELKMELFK-------D--GRQFIVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 165 ~~~~vGr~~~~~~l~~~L~~-------~--~~~vv~I~G~gGiGKTtLa~~~~~ 209 (695)
...++|-+..++.+.+.+.. + ...++.++|+.|+|||.||+.++.
T Consensus 565 ~~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~ 618 (852)
T TIGR03345 565 AERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAE 618 (852)
T ss_pred cCeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHH
Confidence 35679999999999988751 1 135789999999999999998876
No 183
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=97.36 E-value=0.0024 Score=58.91 Aligned_cols=116 Identities=16% Similarity=0.222 Sum_probs=70.3
Q ss_pred CCcchHHHHHHHHHcCCc-eEEEEEcCCCCcHHHHHHHHhccc---ccc---------------ccCCCcEEEEEeCCC-
Q 042541 170 GLDVPLKELKMELFKDGR-QFIVVSAPGGYGKTTLVQRLCKDD---QVQ---------------GKFKDDIFYVTVSKN- 229 (695)
Q Consensus 170 Gr~~~~~~l~~~L~~~~~-~vv~I~G~gGiGKTtLa~~~~~~~---~~~---------------~~f~~~~~wv~~~~~- 229 (695)
|-++..+.|...+..+.. ..+.++|+.|+||+++|..+++.- ... ...+. +.|+.-...
T Consensus 1 gq~~~~~~L~~~~~~~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d-~~~~~~~~~~ 79 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSGRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPD-FIIIKPDKKK 79 (162)
T ss_dssp S-HHHHHHHHHHHHCTC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTT-EEEEETTTSS
T ss_pred CcHHHHHHHHHHHHcCCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcc-eEEEeccccc
Confidence 445566777777776664 568999999999999998876621 111 12333 445544432
Q ss_pred --CCHHHHHHHHHHhcCCCCCCCCChHHHHHHHHHHHHhcCCCcEEEEEeCCCCCChH----HHhhhccCCCCCEEEEEc
Q 042541 230 --PNVKAIVQKVLHHKGYPVPEFQTDEAAINDLERFFKQMRIEAILLVLDDVWPGSES----LLQKLGFQLPDYKILVTS 303 (695)
Q Consensus 230 --~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~~~LlVlDdv~~~~~~----~~~~l~~~~~gs~iivTt 303 (695)
..++++. ++...+.... ..++.-++|+||++..... +++.+-....++.+|++|
T Consensus 80 ~~i~i~~ir-~i~~~~~~~~-------------------~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~t 139 (162)
T PF13177_consen 80 KSIKIDQIR-EIIEFLSLSP-------------------SEGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILIT 139 (162)
T ss_dssp SSBSHHHHH-HHHHHCTSS--------------------TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEEE
T ss_pred chhhHHHHH-HHHHHHHHHH-------------------hcCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEEE
Confidence 2333322 4444433221 1356789999999877644 556666666789999988
Q ss_pred CCC
Q 042541 304 RSE 306 (695)
Q Consensus 304 R~~ 306 (695)
.+.
T Consensus 140 ~~~ 142 (162)
T PF13177_consen 140 NNP 142 (162)
T ss_dssp S-G
T ss_pred CCh
Confidence 876
No 184
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=97.36 E-value=2.3e-05 Score=78.99 Aligned_cols=119 Identities=13% Similarity=0.181 Sum_probs=88.2
Q ss_pred ccCChhhcCCCCCcEEEEcccCCCCcccCcccccccCCCCcEEEeccCCCCCcc--cccccccccEEeecc-ccCCcccc
Q 042541 564 YVLPDFLQKMDELKVLIVTNYGFSPAELNNFRVLSALSKLKKIRLEHVSLPNSL--ATVRMNHLQKVSLVM-CNVGQVFR 640 (695)
Q Consensus 564 ~~~p~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~lp--~i~~l~~L~~L~l~~-~~i~~~~~ 640 (695)
..+|..+. ..-..+.|..|++. .++. ..|+.+++||.|+|++|.|+.|- ++..|..|-.|-+.+ |+|+.+|.
T Consensus 59 ~eVP~~LP--~~tveirLdqN~I~--~iP~-~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k 133 (498)
T KOG4237|consen 59 TEVPANLP--PETVEIRLDQNQIS--SIPP-GAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPK 133 (498)
T ss_pred ccCcccCC--CcceEEEeccCCcc--cCCh-hhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhh
Confidence 34554332 23456677777663 2222 23889999999999999999664 899999887777766 78999999
Q ss_pred cchhhhcccCCCccEEecccccccccCc-hhhcCCCCCceeecccccCCCCCCC
Q 042541 641 NSTFRISDAFPNLLEMDIDYCNDLIELP-DGLCDIVSMEKLRITNCHRLSALPE 693 (695)
Q Consensus 641 ~~~~~l~~~l~~L~~L~l~~c~~l~~lP-~~i~~L~~L~~L~l~~~~~l~~lP~ 693 (695)
+.|. +|..||.|.+.-|. +.-++ ..+..|++|..|.+.+| .+..++.
T Consensus 134 ~~F~----gL~slqrLllNan~-i~Cir~~al~dL~~l~lLslyDn-~~q~i~~ 181 (498)
T KOG4237|consen 134 GAFG----GLSSLQRLLLNANH-INCIRQDALRDLPSLSLLSLYDN-KIQSICK 181 (498)
T ss_pred hHhh----hHHHHHHHhcChhh-hcchhHHHHHHhhhcchhcccch-hhhhhcc
Confidence 9888 89999999888764 44444 45889999999999985 4777665
No 185
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.34 E-value=0.0051 Score=61.99 Aligned_cols=163 Identities=15% Similarity=0.192 Sum_probs=93.7
Q ss_pred CCCCCcchHHHHHHHHH----c---------CCceEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCCCCCHH
Q 042541 167 ISPGLDVPLKELKMELF----K---------DGRQFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSKNPNVK 233 (695)
Q Consensus 167 ~~vGr~~~~~~l~~~L~----~---------~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~~~~~~ 233 (695)
.+=|-++.+++|.+.+. + +.++=|.+||++|.|||-||++|++ +....| +.+...
T Consensus 152 dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~--~T~AtF------IrvvgS---- 219 (406)
T COG1222 152 DIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVAN--QTDATF------IRVVGS---- 219 (406)
T ss_pred hccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHh--ccCceE------EEeccH----
Confidence 44568888999988876 1 2367799999999999999999999 454443 333332
Q ss_pred HHHHHHHHhcCCCCCCCCChHHHHHHHHHHHHh-cCCCcEEEEEeCCCCCC----------h--------HHHhhhccCC
Q 042541 234 AIVQKVLHHKGYPVPEFQTDEAAINDLERFFKQ-MRIEAILLVLDDVWPGS----------E--------SLLQKLGFQL 294 (695)
Q Consensus 234 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~~-l~~~~~LlVlDdv~~~~----------~--------~~~~~l~~~~ 294 (695)
++++..-+. . ....+++++. -...++.|.+|.++... + .++..+.-+.
T Consensus 220 ----ElVqKYiGE------G---aRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD 286 (406)
T COG1222 220 ----ELVQKYIGE------G---ARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFD 286 (406)
T ss_pred ----HHHHHHhcc------c---hHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCC
Confidence 222222111 1 1223333321 14678999999985332 1 1333333333
Q ss_pred C--CCEEEEEcCCCC------CCCC---CeEecCCCChHHHHHHHHHhccCCCCCCCCCchHHHHHHHHhcCCch
Q 042541 295 P--DYKILVTSRSEF------PQFG---SVHYLKPLTYEAARTLFLHSANLQDGNSYIPDENIVSKILRACKGCP 358 (695)
Q Consensus 295 ~--gs~iivTtR~~~------~~~~---~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~G~P 358 (695)
+ +.|||..|-... ...| ..++++.-+.+.-.++|+-++..-.-..... .+.|++.|.|.-
T Consensus 287 ~~~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd----~e~la~~~~g~s 357 (406)
T COG1222 287 PRGNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVD----LELLARLTEGFS 357 (406)
T ss_pred CCCCeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcC----HHHHHHhcCCCc
Confidence 3 468888665541 1233 3677775555556677766654333322222 456677777654
No 186
>PTZ00494 tuzin-like protein; Provisional
Probab=97.33 E-value=0.28 Score=51.39 Aligned_cols=165 Identities=11% Similarity=0.031 Sum_probs=99.4
Q ss_pred CCCCCCCCCCCCCCcchHHHHHHHHHc---CCceEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCCCCCHHH
Q 042541 158 CCSAPDPPVISPGLDVPLKELKMELFK---DGRQFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSKNPNVKA 234 (695)
Q Consensus 158 ~~~~~~~~~~~vGr~~~~~~l~~~L~~---~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~~~~~~~ 234 (695)
....+..+..+|.|+.+-..+.+.|.+ ..++++++.|.-|.||++|.+.....+ +-+ .++|++... ++
T Consensus 363 ~~~a~a~~~~~V~R~~eE~~vRqvL~qld~aHPRIvV~TG~~GcGKSslcRsAvrkE----~~p--aV~VDVRg~---ED 433 (664)
T PTZ00494 363 GMLAAAAEAFEVRREDEEALVRSVLTQMAPSHPRIVALAGGSGGGRCVPCRRAVRVE----GVA--LVHVDVGGT---ED 433 (664)
T ss_pred ccccccccccccchhhHHHHHHHHHhhccCCCCcEEEEecCCCCCchHHHHHHHHHc----CCC--eEEEEecCC---cc
Confidence 344556677889999998888887773 358999999999999999999887632 223 348888765 45
Q ss_pred HHHHHHHhcCCCCCCCCC-hHHHHHHHHHHH-HhcCCCcEEEEEeCCCCCC-hH---HHhhhccCCCCCEEEEEcCCCCC
Q 042541 235 IVQKVLHHKGYPVPEFQT-DEAAINDLERFF-KQMRIEAILLVLDDVWPGS-ES---LLQKLGFQLPDYKILVTSRSEFP 308 (695)
Q Consensus 235 ~~~~i~~~l~~~~~~~~~-~~~~~~~l~~~~-~~l~~~~~LlVlDdv~~~~-~~---~~~~l~~~~~gs~iivTtR~~~~ 308 (695)
-++.+++.++.+..+... .-+.+.+....- ....++.=+||+-==...+ .. ..-.+.....-|+|++---.+..
T Consensus 434 tLrsVVKALgV~nve~CGDlLdFI~ea~~~A~~~~~g~~P~lVlkLREGssL~RVYnE~vaLacDrRlCHvv~EVplESL 513 (664)
T PTZ00494 434 TLRSVVRALGVSNVEVCGDLLGFVEEAMRGATVKASDGVPFLVMRLREGSDLGRVYGEVVSLVSDCQACHIVLAVPMKAL 513 (664)
T ss_pred hHHHHHHHhCCCChhhhccHHHHHHHHHHHHHHhcCCCCCEEEEEeccCCcHHHHHHHHHHHHccchhheeeeechHhhh
Confidence 678889999876543211 112222222222 2234555566653211111 00 11223333344788774443321
Q ss_pred -------CCCCeEecCCCChHHHHHHHHHh
Q 042541 309 -------QFGSVHYLKPLTYEAARTLFLHS 331 (695)
Q Consensus 309 -------~~~~~~~l~~L~~~ea~~Lf~~~ 331 (695)
.--..|-+++++..+|.++-.+.
T Consensus 514 T~~n~~LPRLDFy~VPnFSr~QAf~YtqH~ 543 (664)
T PTZ00494 514 TPLNVSSRRLDFYCIPPFSRRQAFAYAEHT 543 (664)
T ss_pred chhhccCccceeEecCCcCHHHHHHHHhcc
Confidence 11127889999999999887654
No 187
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.31 E-value=0.0014 Score=71.21 Aligned_cols=154 Identities=16% Similarity=0.150 Sum_probs=88.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCCCCCHHHHHHHHHHhcCCCCCCCCChHHHHHHHHHHH-H
Q 042541 187 RQFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSKNPNVKAIVQKVLHHKGYPVPEFQTDEAAINDLERFF-K 265 (695)
Q Consensus 187 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~-~ 265 (695)
.+-|.|.|+.|+|||+||+++++ .....-.+++.+++++.-.. ...+.....+..++ +
T Consensus 431 ~~~Ill~G~~GsGKT~L~kal~~--~~~k~~~~hv~~v~Cs~l~~-------------------~~~e~iQk~l~~vfse 489 (952)
T KOG0735|consen 431 HGNILLNGPKGSGKTNLVKALFD--YYSKDLIAHVEIVSCSTLDG-------------------SSLEKIQKFLNNVFSE 489 (952)
T ss_pred cccEEEeCCCCCCHhHHHHHHHH--HhccccceEEEEEechhccc-------------------hhHHHHHHHHHHHHHH
Confidence 46789999999999999999998 44343344466666654211 11222233344444 5
Q ss_pred hcCCCcEEEEEeCCCCCC--------hH-----HHhhhc------cCCCCC--EEEEEcCCCC---------CCCCCeEe
Q 042541 266 QMRIEAILLVLDDVWPGS--------ES-----LLQKLG------FQLPDY--KILVTSRSEF---------PQFGSVHY 315 (695)
Q Consensus 266 ~l~~~~~LlVlDdv~~~~--------~~-----~~~~l~------~~~~gs--~iivTtR~~~---------~~~~~~~~ 315 (695)
.+.-.+-++||||++-.. ++ .+..+. ....+. .+|.|..... ........
T Consensus 490 ~~~~~PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~ 569 (952)
T KOG0735|consen 490 ALWYAPSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNPLLVSPLLFQIVIA 569 (952)
T ss_pred HHhhCCcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcChhhcCccceEEEEe
Confidence 667889999999984221 11 111111 112233 3445555431 12234788
Q ss_pred cCCCChHHHHHHHHHhccCCCCCCCCCchHHHHHHHHhcCCc-hhHHHHH
Q 042541 316 LKPLTYEAARTLFLHSANLQDGNSYIPDENIVSKILRACKGC-PLALKVV 364 (695)
Q Consensus 316 l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~G~-PLai~~~ 364 (695)
++.+...+-.++++.........+ ......-+..+|+|. |.-++++
T Consensus 570 L~ap~~~~R~~IL~~~~s~~~~~~---~~~dLd~ls~~TEGy~~~DL~if 616 (952)
T KOG0735|consen 570 LPAPAVTRRKEILTTIFSKNLSDI---TMDDLDFLSVKTEGYLATDLVIF 616 (952)
T ss_pred cCCcchhHHHHHHHHHHHhhhhhh---hhHHHHHHHHhcCCccchhHHHH
Confidence 999998888888776553332211 223344488889885 4444443
No 188
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.31 E-value=9.7e-05 Score=70.94 Aligned_cols=113 Identities=19% Similarity=0.223 Sum_probs=70.0
Q ss_pred ccCChhhcCCCCCcEEEEcccCCCCcccCcccccccCCCCcEEEeccC--CCC-Ccc-cccccccccEEeeccccCCccc
Q 042541 564 YVLPDFLQKMDELKVLIVTNYGFSPAELNNFRVLSALSKLKKIRLEHV--SLP-NSL-ATVRMNHLQKVSLVMCNVGQVF 639 (695)
Q Consensus 564 ~~~p~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~--~l~-~lp-~i~~l~~L~~L~l~~~~i~~~~ 639 (695)
+.+....-.+..|..|.+.+.+.++ +..+-.|++|++|.++.| .+. .++ ..-++++|++|++++|+|+.
T Consensus 33 g~~~gl~d~~~~le~ls~~n~gltt-----~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~-- 105 (260)
T KOG2739|consen 33 GKLGGLTDEFVELELLSVINVGLTT-----LTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD-- 105 (260)
T ss_pred CCcccccccccchhhhhhhccceee-----cccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc--
Confidence 3444444455666666666655532 122446778888888888 444 555 55566888899998887663
Q ss_pred ccchhhhcccCCCccEEecccccccccCc----hhhcCCCCCceeecccc
Q 042541 640 RNSTFRISDAFPNLLEMDIDYCNDLIELP----DGLCDIVSMEKLRITNC 685 (695)
Q Consensus 640 ~~~~~~l~~~l~~L~~L~l~~c~~l~~lP----~~i~~L~~L~~L~l~~~ 685 (695)
.+....+. .+.+|..|++.+|.... +- .-+.-|++|.+|+-..+
T Consensus 106 lstl~pl~-~l~nL~~Ldl~n~~~~~-l~dyre~vf~ll~~L~~LD~~dv 153 (260)
T KOG2739|consen 106 LSTLRPLK-ELENLKSLDLFNCSVTN-LDDYREKVFLLLPSLKYLDGCDV 153 (260)
T ss_pred ccccchhh-hhcchhhhhcccCCccc-cccHHHHHHHHhhhhcccccccc
Confidence 11111222 67788888888885443 22 12556778888776554
No 189
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.26 E-value=0.038 Score=65.26 Aligned_cols=110 Identities=16% Similarity=0.224 Sum_probs=62.6
Q ss_pred CCCCCCCcchHHHHHHHHHcC---------CceEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCCCCCHHHH
Q 042541 165 PVISPGLDVPLKELKMELFKD---------GRQFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSKNPNVKAI 235 (695)
Q Consensus 165 ~~~~vGr~~~~~~l~~~L~~~---------~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~~~~~~~~ 235 (695)
...++|.+..++.+...+... ...++.++|+.|+|||++|+.+.. .....-.. ++.++++.......+
T Consensus 564 ~~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~--~l~~~~~~-~i~~d~s~~~~~~~~ 640 (852)
T TIGR03346 564 HERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAE--FLFDDEDA-MVRIDMSEYMEKHSV 640 (852)
T ss_pred hcccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHH--HhcCCCCc-EEEEechhhcccchH
Confidence 346899999999999888731 135688999999999999999987 33222222 445555543321111
Q ss_pred HHHHHHhcCCCCCCCCChHHHHHHHHHHHHhcCCCcEEEEEeCCCCCChH
Q 042541 236 VQKVLHHKGYPVPEFQTDEAAINDLERFFKQMRIEAILLVLDDVWPGSES 285 (695)
Q Consensus 236 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~~~LlVlDdv~~~~~~ 285 (695)
..+ +|.+ +.....++ ...+...+. +....+|+||++......
T Consensus 641 -~~l---~g~~-~g~~g~~~-~g~l~~~v~--~~p~~vlllDeieka~~~ 682 (852)
T TIGR03346 641 -ARL---IGAP-PGYVGYEE-GGQLTEAVR--RKPYSVVLFDEVEKAHPD 682 (852)
T ss_pred -HHh---cCCC-CCccCccc-ccHHHHHHH--cCCCcEEEEeccccCCHH
Confidence 111 2221 21111111 112222221 233459999999877754
No 190
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.25 E-value=0.015 Score=56.56 Aligned_cols=221 Identities=14% Similarity=0.108 Sum_probs=121.3
Q ss_pred CCCCcchHHHHHHHHHcCCceEEEEEcCCCCcHHHHHHHHhccc---cc-cccCCCcEEEEEeCC----------CC---
Q 042541 168 SPGLDVPLKELKMELFKDGRQFIVVSAPGGYGKTTLVQRLCKDD---QV-QGKFKDDIFYVTVSK----------NP--- 230 (695)
Q Consensus 168 ~vGr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~~~~~~---~~-~~~f~~~~~wv~~~~----------~~--- 230 (695)
+.++++....+......++.+-..++|++|.||-|.+..+.+.- .+ +-+-+. .-|.+-+. ++
T Consensus 15 l~~~~e~~~~Lksl~~~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~-~t~~tpS~kklEistvsS~yHlE 93 (351)
T KOG2035|consen 15 LIYHEELANLLKSLSSTGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIET-RTFTTPSKKKLEISTVSSNYHLE 93 (351)
T ss_pred cccHHHHHHHHHHhcccCCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeee-EEEecCCCceEEEEEecccceEE
Confidence 56677777777666666678999999999999999887665521 00 001111 11222221 11
Q ss_pred --------CHHHHHHHHHHhcCCCCCCCCChHHHHHHHHHHHHhcCCCcE-EEEEeCCCCCChH----HHhhhccCCCCC
Q 042541 231 --------NVKAIVQKVLHHKGYPVPEFQTDEAAINDLERFFKQMRIEAI-LLVLDDVWPGSES----LLQKLGFQLPDY 297 (695)
Q Consensus 231 --------~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~~~-LlVlDdv~~~~~~----~~~~l~~~~~gs 297 (695)
.-.-+.++++++++...+- +.-..+.| ++|+-.+++...+ +......-...+
T Consensus 94 itPSDaG~~DRvViQellKevAQt~qi---------------e~~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkYs~~~ 158 (351)
T KOG2035|consen 94 ITPSDAGNYDRVVIQELLKEVAQTQQI---------------ETQGQRPFKVVVINEADELTRDAQHALRRTMEKYSSNC 158 (351)
T ss_pred eChhhcCcccHHHHHHHHHHHHhhcch---------------hhccccceEEEEEechHhhhHHHHHHHHHHHHHHhcCc
Confidence 1233455555554432110 11123344 5556555443322 222233334568
Q ss_pred EEEEEcCCCCC-----CCC-CeEecCCCChHHHHHHHHHhccCCCCCCCCCchHHHHHHHHhcCCchhHHHHHHHhhC--
Q 042541 298 KILVTSRSEFP-----QFG-SVHYLKPLTYEAARTLFLHSANLQDGNSYIPDENIVSKILRACKGCPLALKVVGGSLC-- 369 (695)
Q Consensus 298 ~iivTtR~~~~-----~~~-~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~~~~L~-- 369 (695)
|+|+..-+-.. ... -.+++...+++|-...+...+...+-.. ..+.+.+|+++++|.-.-...+-...+
T Consensus 159 RlIl~cns~SriIepIrSRCl~iRvpaps~eeI~~vl~~v~~kE~l~l---p~~~l~rIa~kS~~nLRrAllmlE~~~~~ 235 (351)
T KOG2035|consen 159 RLILVCNSTSRIIEPIRSRCLFIRVPAPSDEEITSVLSKVLKKEGLQL---PKELLKRIAEKSNRNLRRALLMLEAVRVN 235 (351)
T ss_pred eEEEEecCcccchhHHhhheeEEeCCCCCHHHHHHHHHHHHHHhcccC---cHHHHHHHHHHhcccHHHHHHHHHHHHhc
Confidence 88875444321 111 2688999999999999988775544321 278999999999997543333333222
Q ss_pred C-------C--CHHHHHHHHHHhcCCCCccCchhhHHHHHHHHHHhc
Q 042541 370 G-------K--HEVFWQRMVKECSRGESVFQSKNDILDCLGSSLDVL 407 (695)
Q Consensus 370 ~-------~--~~~~w~~~l~~~~~~~~~~~~~~~i~~~l~~s~~~L 407 (695)
+ . +.-+|+..+.+....--.......+..+-..-|+-|
T Consensus 236 n~~~~a~~~~i~~~dWe~~i~e~a~~i~~eQs~~~L~~vR~~LYeLL 282 (351)
T KOG2035|consen 236 NEPFTANSQVIPKPDWEIYIQEIARVILKEQSPAKLLEVRGRLYELL 282 (351)
T ss_pred cccccccCCCCCCccHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHH
Confidence 1 1 346798777765332111223445565555566555
No 191
>PRK08118 topology modulation protein; Reviewed
Probab=97.22 E-value=0.00018 Score=66.83 Aligned_cols=35 Identities=26% Similarity=0.544 Sum_probs=26.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcccccc-ccCCCcEEE
Q 042541 188 QFIVVSAPGGYGKTTLVQRLCKDDQVQ-GKFKDDIFY 223 (695)
Q Consensus 188 ~vv~I~G~gGiGKTtLa~~~~~~~~~~-~~f~~~~~w 223 (695)
+.|.|+|++|+||||||+.+++...+. -+|+. ++|
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~-l~~ 37 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDA-LFW 37 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCceecch-hhc
Confidence 358999999999999999999854333 34555 555
No 192
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.19 E-value=0.027 Score=66.23 Aligned_cols=44 Identities=18% Similarity=0.243 Sum_probs=35.9
Q ss_pred CCCCCCcchHHHHHHHHHc-------CC--ceEEEEEcCCCCcHHHHHHHHhc
Q 042541 166 VISPGLDVPLKELKMELFK-------DG--RQFIVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 166 ~~~vGr~~~~~~l~~~L~~-------~~--~~vv~I~G~gGiGKTtLa~~~~~ 209 (695)
..++|.+..++.+...+.. ++ ..++.++|+.|+|||++|+.+++
T Consensus 568 ~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~ 620 (857)
T PRK10865 568 HRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALAN 620 (857)
T ss_pred CeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 4578999999998888762 11 24788999999999999999986
No 193
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.17 E-value=0.00025 Score=63.89 Aligned_cols=85 Identities=24% Similarity=0.358 Sum_probs=50.1
Q ss_pred EEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCCCCCHHHHHHHHHHhcCCCCCCCCChHHHHHHHHHHHHhcCC
Q 042541 190 IVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSKNPNVKAIVQKVLHHKGYPVPEFQTDEAAINDLERFFKQMRI 269 (695)
Q Consensus 190 v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~ 269 (695)
|.|+|++|+|||+||+.+++ .. ...+.-+.++...+..++....--.-+.. .. .... +. .. -.
T Consensus 2 vlL~G~~G~GKt~l~~~la~--~~----~~~~~~i~~~~~~~~~dl~g~~~~~~~~~--~~-~~~~----l~---~a-~~ 64 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAA--LL----GRPVIRINCSSDTTEEDLIGSYDPSNGQF--EF-KDGP----LV---RA-MR 64 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHH--HH----TCEEEEEE-TTTSTHHHHHCEEET-TTTT--CE-EE-C----CC---TT-HH
T ss_pred EEEECCCCCCHHHHHHHHHH--Hh----hcceEEEEeccccccccceeeeeeccccc--cc-cccc----cc---cc-cc
Confidence 67999999999999999987 33 33356778888888887764332210000 00 0000 00 00 02
Q ss_pred CcEEEEEeCCCCCChHHHhhhc
Q 042541 270 EAILLVLDDVWPGSESLLQKLG 291 (695)
Q Consensus 270 ~~~LlVlDdv~~~~~~~~~~l~ 291 (695)
+..++|||++.......+..+.
T Consensus 65 ~~~il~lDEin~a~~~v~~~L~ 86 (139)
T PF07728_consen 65 KGGILVLDEINRAPPEVLESLL 86 (139)
T ss_dssp EEEEEEESSCGG--HHHHHTTH
T ss_pred ceeEEEECCcccCCHHHHHHHH
Confidence 7899999999877665555543
No 194
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.17 E-value=0.00014 Score=78.48 Aligned_cols=81 Identities=17% Similarity=0.346 Sum_probs=36.2
Q ss_pred cccCCCCcEEEeccCCCCCcccccccccccEEeeccccCCcccccchhhhcccCCCccEEecccccccccCchh-hcCCC
Q 042541 597 LSALSKLKKIRLEHVSLPNSLATVRMNHLQKVSLVMCNVGQVFRNSTFRISDAFPNLLEMDIDYCNDLIELPDG-LCDIV 675 (695)
Q Consensus 597 l~~l~~L~~L~L~~~~l~~lp~i~~l~~L~~L~l~~~~i~~~~~~~~~~l~~~l~~L~~L~l~~c~~l~~lP~~-i~~L~ 675 (695)
+..+.+|++|++++|.|..+..+..+..|+.|++++|.|..+.... .+++|+.+++++|. +..++.. +..+.
T Consensus 114 l~~~~~L~~L~ls~N~I~~i~~l~~l~~L~~L~l~~N~i~~~~~~~------~l~~L~~l~l~~n~-i~~ie~~~~~~~~ 186 (414)
T KOG0531|consen 114 LSSLVNLQVLDLSFNKITKLEGLSTLTLLKELNLSGNLISDISGLE------SLKSLKLLDLSYNR-IVDIENDELSELI 186 (414)
T ss_pred hhhhhcchheeccccccccccchhhccchhhheeccCcchhccCCc------cchhhhcccCCcch-hhhhhhhhhhhcc
Confidence 3444555555555555554444444444555555555444322111 24455555555432 2333321 24444
Q ss_pred CCceeeccc
Q 042541 676 SMEKLRITN 684 (695)
Q Consensus 676 ~L~~L~l~~ 684 (695)
+|+.+++.+
T Consensus 187 ~l~~l~l~~ 195 (414)
T KOG0531|consen 187 SLEELDLGG 195 (414)
T ss_pred chHHHhccC
Confidence 555555544
No 195
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.16 E-value=0.007 Score=63.45 Aligned_cols=169 Identities=13% Similarity=0.128 Sum_probs=96.3
Q ss_pred CCCCCCCcchHHH-HHHHHH-cC--CceEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCCCCCHHHHHHHHH
Q 042541 165 PVISPGLDVPLKE-LKMELF-KD--GRQFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSKNPNVKAIVQKVL 240 (695)
Q Consensus 165 ~~~~vGr~~~~~~-l~~~L~-~~--~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~~~~~~~~~~~i~ 240 (695)
..+++|-...... +...+. .+ ....+.|+|..|.|||.|++++.+ ......+. ...+.++ .+.....++
T Consensus 87 dnFv~g~~N~~A~aa~~~va~~~g~~~nplfi~G~~GlGKTHLl~Aign--~~~~~~~~-a~v~y~~----se~f~~~~v 159 (408)
T COG0593 87 DNFVVGPSNRLAYAAAKAVAENPGGAYNPLFIYGGVGLGKTHLLQAIGN--EALANGPN-ARVVYLT----SEDFTNDFV 159 (408)
T ss_pred hheeeCCchHHHHHHHHHHHhccCCcCCcEEEECCCCCCHHHHHHHHHH--HHHhhCCC-ceEEecc----HHHHHHHHH
Confidence 4555665544322 222222 22 267899999999999999999998 55555543 2233333 234444444
Q ss_pred HhcCCCCCCCCChHHHHHHHHHHHHhcCCCcEEEEEeCCCCCC------hHHHhhhccC-CCCCEEEEEcCCCCC-----
Q 042541 241 HHKGYPVPEFQTDEAAINDLERFFKQMRIEAILLVLDDVWPGS------ESLLQKLGFQ-LPDYKILVTSRSEFP----- 308 (695)
Q Consensus 241 ~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~~~LlVlDdv~~~~------~~~~~~l~~~-~~gs~iivTtR~~~~----- 308 (695)
..+.. ...+..+ +.. .-=++++||++... +.+...|..- ..|-.||+|++....
T Consensus 160 ~a~~~---------~~~~~Fk---~~y--~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~ 225 (408)
T COG0593 160 KALRD---------NEMEKFK---EKY--SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGL 225 (408)
T ss_pred HHHHh---------hhHHHHH---Hhh--ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccc
Confidence 44321 1122222 222 33489999985422 1122222221 234489999876632
Q ss_pred --------CCCCeEecCCCChHHHHHHHHHhccCCCCCCCCCchHHHHHHHHhcCCc
Q 042541 309 --------QFGSVHYLKPLTYEAARTLFLHSANLQDGNSYIPDENIVSKILRACKGC 357 (695)
Q Consensus 309 --------~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~G~ 357 (695)
..|..+.+.+.+.+....++.+.+....... .++++.-|++.....
T Consensus 226 ~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~kka~~~~~~i---~~ev~~~la~~~~~n 279 (408)
T COG0593 226 EDRLRSRLEWGLVVEIEPPDDETRLAILRKKAEDRGIEI---PDEVLEFLAKRLDRN 279 (408)
T ss_pred cHHHHHHHhceeEEeeCCCCHHHHHHHHHHHHHhcCCCC---CHHHHHHHHHHhhcc
Confidence 2234899999999999999998765443322 245566666655443
No 196
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=97.15 E-value=0.0011 Score=65.81 Aligned_cols=94 Identities=13% Similarity=0.174 Sum_probs=59.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCCCC-CHHHHHHHHHHhcCC-------CCCCCCChH---
Q 042541 186 GRQFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSKNP-NVKAIVQKVLHHKGY-------PVPEFQTDE--- 254 (695)
Q Consensus 186 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~~~-~~~~~~~~i~~~l~~-------~~~~~~~~~--- 254 (695)
..+-++|.|.+|+|||||++.+++ .++.+|...++++-+++.. ...++.+++...-.. ...+.....
T Consensus 68 ~GQr~~If~~~G~GKTtLa~~i~~--~i~~~~~~~~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~ 145 (274)
T cd01133 68 KGGKIGLFGGAGVGKTVLIMELIN--NIAKAHGGYSVFAGVGERTREGNDLYHEMKESGVLSKTALVYGQMNEPPGARAR 145 (274)
T ss_pred cCCEEEEecCCCCChhHHHHHHHH--HHHhcCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHH
Confidence 357899999999999999999998 5665676657777787655 456666766653211 111111111
Q ss_pred --HHHHHHHHHHHhcCCCcEEEEEeCCCC
Q 042541 255 --AAINDLERFFKQMRIEAILLVLDDVWP 281 (695)
Q Consensus 255 --~~~~~l~~~~~~l~~~~~LlVlDdv~~ 281 (695)
...-.+.+.+..-.++.+|+++||+-.
T Consensus 146 ~~~~a~~~AEyfr~~~g~~Vl~~~Dsltr 174 (274)
T cd01133 146 VALTGLTMAEYFRDEEGQDVLLFIDNIFR 174 (274)
T ss_pred HHHHHHHHHHHHHHhcCCeEEEEEeChhH
Confidence 111223344422248999999999843
No 197
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.15 E-value=0.03 Score=65.85 Aligned_cols=108 Identities=17% Similarity=0.237 Sum_probs=60.4
Q ss_pred CCCCCCcchHHHHHHHHHc-------CC--ceEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCCCCCHHHHH
Q 042541 166 VISPGLDVPLKELKMELFK-------DG--RQFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSKNPNVKAIV 236 (695)
Q Consensus 166 ~~~vGr~~~~~~l~~~L~~-------~~--~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~~~~~~~~~ 236 (695)
..++|-+..++.+...+.. ++ ...+.++|+.|+|||+||+.+++ .+-..-.. .+-++.++......+.
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~--~l~~~~~~-~~~~d~s~~~~~~~~~ 585 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALAS--YFFGSEDA-MIRLDMSEYMEKHTVS 585 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHH--HhcCCccc-eEEEEchhccccccHH
Confidence 4579999999999888761 11 24567999999999999999987 33222122 4455555433222211
Q ss_pred HHHHHhcCCCCCCCCChHHHHHHHHHHHHhcCCC-cEEEEEeCCCCCChH
Q 042541 237 QKVLHHKGYPVPEFQTDEAAINDLERFFKQMRIE-AILLVLDDVWPGSES 285 (695)
Q Consensus 237 ~~i~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~-~~LlVlDdv~~~~~~ 285 (695)
. -+|.+ +.....++ ...+.+ .++.+ ..+++||++......
T Consensus 586 ~----l~g~~-~gyvg~~~-~~~l~~---~~~~~p~~VvllDeieka~~~ 626 (821)
T CHL00095 586 K----LIGSP-PGYVGYNE-GGQLTE---AVRKKPYTVVLFDEIEKAHPD 626 (821)
T ss_pred H----hcCCC-CcccCcCc-cchHHH---HHHhCCCeEEEECChhhCCHH
Confidence 1 12211 11111111 112222 22333 468999999877755
No 198
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.11 E-value=0.00046 Score=72.06 Aligned_cols=83 Identities=16% Similarity=0.345 Sum_probs=53.1
Q ss_pred hcCCCCCcEEEEcccCCCCcccCcccccccCCCCcEEEeccCC-CCCcc-cccccccccEEeeccc-cCCcccccchhhh
Q 042541 570 LQKMDELKVLIVTNYGFSPAELNNFRVLSALSKLKKIRLEHVS-LPNSL-ATVRMNHLQKVSLVMC-NVGQVFRNSTFRI 646 (695)
Q Consensus 570 ~~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~-l~~lp-~i~~l~~L~~L~l~~~-~i~~~~~~~~~~l 646 (695)
+..+.+++.|++++|.+. .++.+ ..+|+.|.+++|. ++.+| .+ ..+|++|++++| .+..+|+
T Consensus 48 ~~~~~~l~~L~Is~c~L~--sLP~L-----P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~------ 112 (426)
T PRK15386 48 IEEARASGRLYIKDCDIE--SLPVL-----PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPE------ 112 (426)
T ss_pred HHHhcCCCEEEeCCCCCc--ccCCC-----CCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccccc------
Confidence 556788999999987442 22221 2358999998754 56777 44 358999999998 5654443
Q ss_pred cccCCCccEEeccc--ccccccCchhhc
Q 042541 647 SDAFPNLLEMDIDY--CNDLIELPDGLC 672 (695)
Q Consensus 647 ~~~l~~L~~L~l~~--c~~l~~lP~~i~ 672 (695)
+|+.|+++. |..+..+|+++.
T Consensus 113 -----sLe~L~L~~n~~~~L~~LPssLk 135 (426)
T PRK15386 113 -----SVRSLEIKGSATDSIKNVPNGLT 135 (426)
T ss_pred -----ccceEEeCCCCCcccccCcchHh
Confidence 344555543 445677777543
No 199
>PRK13531 regulatory ATPase RavA; Provisional
Probab=97.08 E-value=0.0031 Score=67.36 Aligned_cols=42 Identities=12% Similarity=0.101 Sum_probs=36.5
Q ss_pred CCCCCCcchHHHHHHHHHcCCceEEEEEcCCCCcHHHHHHHHhc
Q 042541 166 VISPGLDVPLKELKMELFKDGRQFIVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 166 ~~~vGr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~~~~ 209 (695)
..++||++.++.+...+..+ .-|.|.|++|+|||++|+.+..
T Consensus 20 ~~i~gre~vI~lll~aalag--~hVLL~GpPGTGKT~LAraLa~ 61 (498)
T PRK13531 20 KGLYERSHAIRLCLLAALSG--ESVFLLGPPGIAKSLIARRLKF 61 (498)
T ss_pred hhccCcHHHHHHHHHHHccC--CCEEEECCCChhHHHHHHHHHH
Confidence 45799999999998888755 4588999999999999999987
No 200
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=97.06 E-value=0.02 Score=57.47 Aligned_cols=55 Identities=16% Similarity=0.212 Sum_probs=36.1
Q ss_pred HHHHHHHHHcCCceEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCCCCCHHHHHH
Q 042541 175 LKELKMELFKDGRQFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSKNPNVKAIVQ 237 (695)
Q Consensus 175 ~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~~~~~~~~~~ 237 (695)
++++..++..+ .-|.|.|++|+|||+||+.++. .. ....+.+++....+..+++.
T Consensus 11 ~~~~l~~l~~g--~~vLL~G~~GtGKT~lA~~la~--~l----g~~~~~i~~~~~~~~~dllg 65 (262)
T TIGR02640 11 TSRALRYLKSG--YPVHLRGPAGTGKTTLAMHVAR--KR----DRPVMLINGDAELTTSDLVG 65 (262)
T ss_pred HHHHHHHHhcC--CeEEEEcCCCCCHHHHHHHHHH--Hh----CCCEEEEeCCccCCHHHHhh
Confidence 34444444433 4567999999999999999986 22 22355777777666555543
No 201
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.05 E-value=8.6e-05 Score=63.88 Aligned_cols=110 Identities=15% Similarity=0.214 Sum_probs=84.0
Q ss_pred CCCcEEEEcccCCCCcccC-cccccccCCCCcEEEeccCCCCCcc-ccc-ccccccEEeeccccCCcccccchhhhcccC
Q 042541 574 DELKVLIVTNYGFSPAELN-NFRVLSALSKLKKIRLEHVSLPNSL-ATV-RMNHLQKVSLVMCNVGQVFRNSTFRISDAF 650 (695)
Q Consensus 574 ~~Lr~L~l~~~~~~~~~~~-~~~~l~~l~~L~~L~L~~~~l~~lp-~i~-~l~~L~~L~l~~~~i~~~~~~~~~~l~~~l 650 (695)
+.+..++|++|.+. .+. ....+.....|...+|++|.+..+| .+. +.+-++.|+|.+|.|..+|.+.- .+
T Consensus 27 kE~h~ldLssc~lm--~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~A-----am 99 (177)
T KOG4579|consen 27 KELHFLDLSSCQLM--YIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELA-----AM 99 (177)
T ss_pred HHhhhcccccchhh--HHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHh-----hh
Confidence 34667777776542 011 1122556677888899999999999 554 56689999999999999998855 79
Q ss_pred CCccEEecccccccccCchhhcCCCCCceeecccccCCCCCC
Q 042541 651 PNLLEMDIDYCNDLIELPDGLCDIVSMEKLRITNCHRLSALP 692 (695)
Q Consensus 651 ~~L~~L~l~~c~~l~~lP~~i~~L~~L~~L~l~~~~~l~~lP 692 (695)
+.|+.|++++| .+...|.-|..|.+|-.|+..+|. ...+|
T Consensus 100 ~aLr~lNl~~N-~l~~~p~vi~~L~~l~~Lds~~na-~~eid 139 (177)
T KOG4579|consen 100 PALRSLNLRFN-PLNAEPRVIAPLIKLDMLDSPENA-RAEID 139 (177)
T ss_pred HHhhhcccccC-ccccchHHHHHHHhHHHhcCCCCc-cccCc
Confidence 99999999985 578889888889999999998855 55555
No 202
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=97.05 E-value=0.0042 Score=68.86 Aligned_cols=44 Identities=25% Similarity=0.321 Sum_probs=38.1
Q ss_pred CCCCCCcchHHHHHHHHHcCCceEEEEEcCCCCcHHHHHHHHhc
Q 042541 166 VISPGLDVPLKELKMELFKDGRQFIVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 166 ~~~vGr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~~~~ 209 (695)
+.++|.+..++.+...+......-|.|+|++|+|||++|+.+++
T Consensus 65 ~~iiGqs~~i~~l~~al~~~~~~~vLi~Ge~GtGKt~lAr~i~~ 108 (531)
T TIGR02902 65 DEIIGQEEGIKALKAALCGPNPQHVIIYGPPGVGKTAAARLVLE 108 (531)
T ss_pred HHeeCcHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 45799999999998887766666788999999999999999976
No 203
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.03 E-value=0.00021 Score=71.24 Aligned_cols=138 Identities=15% Similarity=0.201 Sum_probs=90.6
Q ss_pred CCceEEEEEEccCc----cccCChhhcCCCCCcEEEEcccCCCCcccC-cccccccCCCCcEEEeccCCCCC-----cc-
Q 042541 549 GPEVKVVVLNIRTK----KYVLPDFLQKMDELKVLIVTNYGFSPAELN-NFRVLSALSKLKKIRLEHVSLPN-----SL- 617 (695)
Q Consensus 549 ~~~l~~L~l~~~~~----~~~~p~~~~~l~~Lr~L~l~~~~~~~~~~~-~~~~l~~l~~L~~L~L~~~~l~~-----lp- 617 (695)
.++|+++....|.. ...+...|+..+.|+.+.+..|++.+.... ....+..+++|++|+|+.|-++. +.
T Consensus 156 ~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~Lak 235 (382)
T KOG1909|consen 156 KPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAK 235 (382)
T ss_pred CcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHH
Confidence 35566666555521 223445677778899999988877655442 12346788899999999988762 33
Q ss_pred cccccccccEEeeccccCCcccccc-hhhhcccCCCccEEeccccccccc----CchhhcCCCCCceeeccccc
Q 042541 618 ATVRMNHLQKVSLVMCNVGQVFRNS-TFRISDAFPNLLEMDIDYCNDLIE----LPDGLCDIVSMEKLRITNCH 686 (695)
Q Consensus 618 ~i~~l~~L~~L~l~~~~i~~~~~~~-~~~l~~~l~~L~~L~l~~c~~l~~----lP~~i~~L~~L~~L~l~~~~ 686 (695)
.+..+++|+.|+++.|.++.---.. ..-+....++|++|.+.+|..-.. +-..+...+.|+.|+|++|.
T Consensus 236 aL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~ 309 (382)
T KOG1909|consen 236 ALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNR 309 (382)
T ss_pred HhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccc
Confidence 5557889999999999776422111 111112578899999998743221 23346678899999999976
No 204
>PRK04132 replication factor C small subunit; Provisional
Probab=97.00 E-value=0.019 Score=66.09 Aligned_cols=150 Identities=12% Similarity=0.113 Sum_probs=93.4
Q ss_pred EEc--CCCCcHHHHHHHHhccccccccCCCcEEEEEeCCCCCHHHHHHHHHHhcCCCCCCCCChHHHHHHHHHHHHhcCC
Q 042541 192 VSA--PGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSKNPNVKAIVQKVLHHKGYPVPEFQTDEAAINDLERFFKQMRI 269 (695)
Q Consensus 192 I~G--~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~ 269 (695)
+.| |.++||||+|..++++ -..+.++..++-++.++..+...+ ++++..+....+- -..
T Consensus 569 ~~G~lPh~lGKTT~A~ala~~-l~g~~~~~~~lElNASd~rgid~I-R~iIk~~a~~~~~-----------------~~~ 629 (846)
T PRK04132 569 IGGNLPTVLHNTTAALALARE-LFGENWRHNFLELNASDERGINVI-REKVKEFARTKPI-----------------GGA 629 (846)
T ss_pred hcCCCCCcccHHHHHHHHHHh-hhcccccCeEEEEeCCCcccHHHH-HHHHHHHHhcCCc-----------------CCC
Confidence 346 7799999999999983 112334444667777776555533 3333332111000 012
Q ss_pred CcEEEEEeCCCCCChH----HHhhhccCCCCCEEEEEcCCCCCC------CCCeEecCCCChHHHHHHHHHhccCCCCCC
Q 042541 270 EAILLVLDDVWPGSES----LLQKLGFQLPDYKILVTSRSEFPQ------FGSVHYLKPLTYEAARTLFLHSANLQDGNS 339 (695)
Q Consensus 270 ~~~LlVlDdv~~~~~~----~~~~l~~~~~gs~iivTtR~~~~~------~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~ 339 (695)
+.-++|+|+++..... ++..+......+++|++|.+.... -...+++.+++.++-...+...+.....
T Consensus 630 ~~KVvIIDEaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Egi-- 707 (846)
T PRK04132 630 SFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGL-- 707 (846)
T ss_pred CCEEEEEECcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcCC--
Confidence 4579999999887643 333343344567888777665221 1238999999999998888776543221
Q ss_pred CCCchHHHHHHHHhcCCchhHHHH
Q 042541 340 YIPDENIVSKILRACKGCPLALKV 363 (695)
Q Consensus 340 ~~~~~~~~~~I~~~c~G~PLai~~ 363 (695)
.-.++....|++.|+|-+..+..
T Consensus 708 -~i~~e~L~~Ia~~s~GDlR~AIn 730 (846)
T PRK04132 708 -ELTEEGLQAILYIAEGDMRRAIN 730 (846)
T ss_pred -CCCHHHHHHHHHHcCCCHHHHHH
Confidence 11366889999999998754443
No 205
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=97.00 E-value=0.025 Score=58.59 Aligned_cols=86 Identities=22% Similarity=0.114 Sum_probs=58.8
Q ss_pred CCCcEEEEEeCCCCCChH----HHhhhccCCCCCEEEEEcCCCCC------CCCCeEecCCCChHHHHHHHHHhccCCCC
Q 042541 268 RIEAILLVLDDVWPGSES----LLQKLGFQLPDYKILVTSRSEFP------QFGSVHYLKPLTYEAARTLFLHSANLQDG 337 (695)
Q Consensus 268 ~~~~~LlVlDdv~~~~~~----~~~~l~~~~~gs~iivTtR~~~~------~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~ 337 (695)
.++.-++|+|+++..... +++.+....+++.+|++|.+... .-...+.+.+++.++..+.+.... .
T Consensus 130 ~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~~----~ 205 (342)
T PRK06964 130 RGGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQG----V 205 (342)
T ss_pred cCCceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHcC----C
Confidence 466779999999877743 66667667778877776666421 112378999999999999887641 1
Q ss_pred CCCCCchHHHHHHHHhcCCchhHHHHH
Q 042541 338 NSYIPDENIVSKILRACKGCPLALKVV 364 (695)
Q Consensus 338 ~~~~~~~~~~~~I~~~c~G~PLai~~~ 364 (695)
+ . ...++..++|.|..+..+
T Consensus 206 --~--~---~~~~l~~~~Gsp~~Al~~ 225 (342)
T PRK06964 206 --A--D---ADALLAEAGGAPLAALAL 225 (342)
T ss_pred --C--h---HHHHHHHcCCCHHHHHHH
Confidence 0 1 234678899999755444
No 206
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=97.00 E-value=0.00055 Score=65.01 Aligned_cols=124 Identities=15% Similarity=0.188 Sum_probs=60.7
Q ss_pred CCcchHHHHHHHHHcCCceEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCC----CC-----C----HHHHH
Q 042541 170 GLDVPLKELKMELFKDGRQFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSK----NP-----N----VKAIV 236 (695)
Q Consensus 170 Gr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~----~~-----~----~~~~~ 236 (695)
.+..+.....+.|. ...+|.+.|++|.|||.||.+.+-+.-..+.|+. ++++.-.- .. + ....+
T Consensus 4 p~~~~Q~~~~~al~--~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~k-iii~Rp~v~~~~~lGflpG~~~eK~~p~~ 80 (205)
T PF02562_consen 4 PKNEEQKFALDALL--NNDLVIVNGPAGTGKTFLALAAALELVKEGEYDK-IIITRPPVEAGEDLGFLPGDLEEKMEPYL 80 (205)
T ss_dssp --SHHHHHHHHHHH--H-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SE-EEEEE-S--TT----SS---------TTT
T ss_pred CCCHHHHHHHHHHH--hCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcE-EEEEecCCCCccccccCCCCHHHHHHHHH
Confidence 34556666777777 4579999999999999999887765434567775 65553211 10 0 01111
Q ss_pred HHHHHhcCCCCCCCCChHHHHHHHHHHH----------HhcCCC---cEEEEEeCCCCCChHHHhhhc-cCCCCCEEEEE
Q 042541 237 QKVLHHKGYPVPEFQTDEAAINDLERFF----------KQMRIE---AILLVLDDVWPGSESLLQKLG-FQLPDYKILVT 302 (695)
Q Consensus 237 ~~i~~~l~~~~~~~~~~~~~~~~l~~~~----------~~l~~~---~~LlVlDdv~~~~~~~~~~l~-~~~~gs~iivT 302 (695)
.-+...+..-... ..+..++ ..++|+ +.++|+|++.+.....+..+. -.+.|||+|++
T Consensus 81 ~p~~d~l~~~~~~--------~~~~~~~~~~~Ie~~~~~~iRGrt~~~~~iIvDEaQN~t~~~~k~ilTR~g~~skii~~ 152 (205)
T PF02562_consen 81 RPIYDALEELFGK--------EKLEELIQNGKIEIEPLAFIRGRTFDNAFIIVDEAQNLTPEELKMILTRIGEGSKIIIT 152 (205)
T ss_dssp HHHHHHHTTTS-T--------TCHHHHHHTTSEEEEEGGGGTT--B-SEEEEE-SGGG--HHHHHHHHTTB-TT-EEEEE
T ss_pred HHHHHHHHHHhCh--------HhHHHHhhcCeEEEEehhhhcCccccceEEEEecccCCCHHHHHHHHcccCCCcEEEEe
Confidence 2222222211100 0111111 223554 369999999888765455444 34568999997
Q ss_pred cC
Q 042541 303 SR 304 (695)
Q Consensus 303 tR 304 (695)
--
T Consensus 153 GD 154 (205)
T PF02562_consen 153 GD 154 (205)
T ss_dssp E-
T ss_pred cC
Confidence 64
No 207
>PRK06921 hypothetical protein; Provisional
Probab=97.00 E-value=0.0029 Score=63.45 Aligned_cols=39 Identities=21% Similarity=0.292 Sum_probs=29.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEe
Q 042541 186 GRQFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTV 226 (695)
Q Consensus 186 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~ 226 (695)
....+.++|..|+|||.||.++++ .+.......++|++.
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~--~l~~~~g~~v~y~~~ 154 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAAN--ELMRKKGVPVLYFPF 154 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHH--HHhhhcCceEEEEEH
Confidence 356799999999999999999998 444332233667765
No 208
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=97.00 E-value=0.011 Score=60.63 Aligned_cols=24 Identities=17% Similarity=0.119 Sum_probs=22.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhc
Q 042541 186 GRQFIVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 186 ~~~vv~I~G~gGiGKTtLa~~~~~ 209 (695)
.+..++|||++|+|||.+|+.+++
T Consensus 147 ~PlgllL~GPPGcGKTllAraiA~ 170 (413)
T PLN00020 147 VPLILGIWGGKGQGKSFQCELVFK 170 (413)
T ss_pred CCeEEEeeCCCCCCHHHHHHHHHH
Confidence 368899999999999999999998
No 209
>CHL00195 ycf46 Ycf46; Provisional
Probab=96.99 E-value=0.0069 Score=65.93 Aligned_cols=166 Identities=13% Similarity=0.135 Sum_probs=88.0
Q ss_pred CCCCCCcchHHHHHHHHH-------c---CCceEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCCCCCHHHH
Q 042541 166 VISPGLDVPLKELKMELF-------K---DGRQFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSKNPNVKAI 235 (695)
Q Consensus 166 ~~~vGr~~~~~~l~~~L~-------~---~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~~~~~~~~ 235 (695)
+.+.|.+..++.+.+... . ..++-|.++|++|+|||.+|+.+++. . ....+-++.+.
T Consensus 228 ~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e--~----~~~~~~l~~~~------- 294 (489)
T CHL00195 228 SDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIAND--W----QLPLLRLDVGK------- 294 (489)
T ss_pred HHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHH--h----CCCEEEEEhHH-------
Confidence 456777666555544221 1 22567899999999999999999873 2 22122333221
Q ss_pred HHHHHHhcCCCCCCCCChHHHHHHHHHHHH-hcCCCcEEEEEeCCCCCCh------------HH----HhhhccCCCCCE
Q 042541 236 VQKVLHHKGYPVPEFQTDEAAINDLERFFK-QMRIEAILLVLDDVWPGSE------------SL----LQKLGFQLPDYK 298 (695)
Q Consensus 236 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~-~l~~~~~LlVlDdv~~~~~------------~~----~~~l~~~~~gs~ 298 (695)
+..... .+....++++++ .-...+++|++|+++.... .. +..+.....+.-
T Consensus 295 ---l~~~~v---------Gese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~ 362 (489)
T CHL00195 295 ---LFGGIV---------GESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVF 362 (489)
T ss_pred ---hccccc---------ChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceE
Confidence 111100 011223344442 2235789999999863210 01 111221222334
Q ss_pred EEEEcCCCC---------CCCCCeEecCCCChHHHHHHHHHhccCCCCCCCCCchHHHHHHHHhcCCch
Q 042541 299 ILVTSRSEF---------PQFGSVHYLKPLTYEAARTLFLHSANLQDGNSYIPDENIVSKILRACKGCP 358 (695)
Q Consensus 299 iivTtR~~~---------~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~G~P 358 (695)
||.||.... ......+.++.-+.++-.++|..+......... .......+++.+.|.-
T Consensus 363 vIaTTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~--~~~dl~~La~~T~GfS 429 (489)
T CHL00195 363 VVATANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSW--KKYDIKKLSKLSNKFS 429 (489)
T ss_pred EEEecCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcc--cccCHHHHHhhcCCCC
Confidence 555665441 123347888888899999999877644321100 1122566777776653
No 210
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.99 E-value=0.0013 Score=62.71 Aligned_cols=57 Identities=19% Similarity=0.328 Sum_probs=39.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCCCC-CHHHHHHHHHHhcCCC
Q 042541 187 RQFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSKNP-NVKAIVQKVLHHKGYP 246 (695)
Q Consensus 187 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~~~-~~~~~~~~i~~~l~~~ 246 (695)
++||.++|+.|+||||.+..++. +.+.+ ...+..++..... ...+-++...+.++.+
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa--~~~~~-~~~v~lis~D~~R~ga~eQL~~~a~~l~vp 58 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAA--RLKLK-GKKVALISADTYRIGAVEQLKTYAEILGVP 58 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHH--HHHHT-T--EEEEEESTSSTHHHHHHHHHHHHHTEE
T ss_pred CEEEEEECCCCCchHhHHHHHHH--HHhhc-cccceeecCCCCCccHHHHHHHHHHHhccc
Confidence 47999999999999988877776 33333 5557788876433 4556667777777654
No 211
>PRK12377 putative replication protein; Provisional
Probab=96.98 E-value=0.004 Score=61.46 Aligned_cols=75 Identities=24% Similarity=0.356 Sum_probs=45.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCCCCCHHHHHHHHHHhcCCCCCCCCChHHHHHHHHHHHH
Q 042541 186 GRQFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSKNPNVKAIVQKVLHHKGYPVPEFQTDEAAINDLERFFK 265 (695)
Q Consensus 186 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~ 265 (695)
+...+.|+|.+|+|||.||.++++ .+...... +.++++. +++..+-...... .. ....++
T Consensus 100 ~~~~l~l~G~~GtGKThLa~AIa~--~l~~~g~~-v~~i~~~------~l~~~l~~~~~~~-------~~----~~~~l~ 159 (248)
T PRK12377 100 GCTNFVFSGKPGTGKNHLAAAIGN--RLLAKGRS-VIVVTVP------DVMSRLHESYDNG-------QS----GEKFLQ 159 (248)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHH--HHHHcCCC-eEEEEHH------HHHHHHHHHHhcc-------ch----HHHHHH
Confidence 346789999999999999999998 44333322 5566554 4555554443211 00 112223
Q ss_pred hcCCCcEEEEEeCCCC
Q 042541 266 QMRIEAILLVLDDVWP 281 (695)
Q Consensus 266 ~l~~~~~LlVlDdv~~ 281 (695)
.+ .+--||||||+..
T Consensus 160 ~l-~~~dLLiIDDlg~ 174 (248)
T PRK12377 160 EL-CKVDLLVLDEIGI 174 (248)
T ss_pred Hh-cCCCEEEEcCCCC
Confidence 33 3567999999943
No 212
>PRK08181 transposase; Validated
Probab=96.98 E-value=0.0017 Score=64.85 Aligned_cols=103 Identities=19% Similarity=0.215 Sum_probs=56.1
Q ss_pred HHHHcCCceEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCCCCCHHHHHHHHHHhcCCCCCCCCChHHHHHH
Q 042541 180 MELFKDGRQFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSKNPNVKAIVQKVLHHKGYPVPEFQTDEAAIND 259 (695)
Q Consensus 180 ~~L~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~ 259 (695)
+|+. ...-+.|+|++|+|||.||..+.+ ....... .++|+++ .+++..+...... ..
T Consensus 101 ~~~~--~~~nlll~Gp~GtGKTHLa~Aia~--~a~~~g~-~v~f~~~------~~L~~~l~~a~~~-----~~------- 157 (269)
T PRK08181 101 SWLA--KGANLLLFGPPGGGKSHLAAAIGL--ALIENGW-RVLFTRT------TDLVQKLQVARRE-----LQ------- 157 (269)
T ss_pred HHHh--cCceEEEEecCCCcHHHHHHHHHH--HHHHcCC-ceeeeeH------HHHHHHHHHHHhC-----Cc-------
Confidence 4543 335699999999999999999987 3332222 2556654 4455555433211 01
Q ss_pred HHHHHHhcCCCcEEEEEeCCCCCC--hH----HHhhhccCCCCCEEEEEcCCC
Q 042541 260 LERFFKQMRIEAILLVLDDVWPGS--ES----LLQKLGFQLPDYKILVTSRSE 306 (695)
Q Consensus 260 l~~~~~~l~~~~~LlVlDdv~~~~--~~----~~~~l~~~~~gs~iivTtR~~ 306 (695)
+.+.++.+ .+.-|||+||+.... ++ +..-+...-.+..+||||...
T Consensus 158 ~~~~l~~l-~~~dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~~~s~IiTSN~~ 209 (269)
T PRK08181 158 LESAIAKL-DKFDLLILDDLAYVTKDQAETSVLFELISARYERRSILITANQP 209 (269)
T ss_pred HHHHHHHH-hcCCEEEEeccccccCCHHHHHHHHHHHHHHHhCCCEEEEcCCC
Confidence 11122222 234599999985432 11 222222111235688998744
No 213
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=96.97 E-value=0.01 Score=59.20 Aligned_cols=165 Identities=18% Similarity=0.211 Sum_probs=97.4
Q ss_pred CCCCCCcchHHHHHHHHH----cCCceEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCCCCCH-HHHHHHHH
Q 042541 166 VISPGLDVPLKELKMELF----KDGRQFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSKNPNV-KAIVQKVL 240 (695)
Q Consensus 166 ~~~vGr~~~~~~l~~~L~----~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~~~~~-~~~~~~i~ 240 (695)
..++|-.++.+++-.++. .++..-|.|+|+.|.|||+|.-....+ .+.|....+-|.+.+..-. .-.+..|.
T Consensus 24 ~~l~g~~~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~---~q~~~E~~l~v~Lng~~~~dk~al~~I~ 100 (408)
T KOG2228|consen 24 INLFGVQDEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSD---IQENGENFLLVRLNGELQTDKIALKGIT 100 (408)
T ss_pred cceeehHHHHHHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhh---HHhcCCeEEEEEECccchhhHHHHHHHH
Confidence 457899999888888876 344566789999999999999887774 3445444556666655432 22344444
Q ss_pred Hhc----CCCCCCCCChHHHHHHHHHHHH---hcCCCcEEEEEeCCCCCChH--------HHhhhc-cCCCCCEEEEEcC
Q 042541 241 HHK----GYPVPEFQTDEAAINDLERFFK---QMRIEAILLVLDDVWPGSES--------LLQKLG-FQLPDYKILVTSR 304 (695)
Q Consensus 241 ~~l----~~~~~~~~~~~~~~~~l~~~~~---~l~~~~~LlVlDdv~~~~~~--------~~~~l~-~~~~gs~iivTtR 304 (695)
+++ ........+..+....+-..++ ...+.++++|+|.++--... +.+.-. ...|=|-|-+|||
T Consensus 101 rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Ttr 180 (408)
T KOG2228|consen 101 RQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTTR 180 (408)
T ss_pred HHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeecc
Confidence 443 2221111223334444444442 12345688999887543211 111111 1335577889999
Q ss_pred CCC---------CCCCC--eEecCCCChHHHHHHHHHhcc
Q 042541 305 SEF---------PQFGS--VHYLKPLTYEAARTLFLHSAN 333 (695)
Q Consensus 305 ~~~---------~~~~~--~~~l~~L~~~ea~~Lf~~~~~ 333 (695)
-.. ....+ ++-+++++-++...+++....
T Consensus 181 ld~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll~ 220 (408)
T KOG2228|consen 181 LDILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLLS 220 (408)
T ss_pred ccHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHhc
Confidence 761 12222 566777888888888887653
No 214
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.96 E-value=0.01 Score=69.01 Aligned_cols=164 Identities=15% Similarity=0.198 Sum_probs=90.5
Q ss_pred CCCCCCcchHHHHHHHHHc-------------CCceEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCCCCCH
Q 042541 166 VISPGLDVPLKELKMELFK-------------DGRQFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSKNPNV 232 (695)
Q Consensus 166 ~~~vGr~~~~~~l~~~L~~-------------~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~~~~~ 232 (695)
..+.|.+..++.|.+.+.- ...+-|.++|++|+|||++|+++++. .... .+.+..+
T Consensus 453 ~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e--~~~~----fi~v~~~----- 521 (733)
T TIGR01243 453 SDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATE--SGAN----FIAVRGP----- 521 (733)
T ss_pred hhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh--cCCC----EEEEehH-----
Confidence 3457877777777766541 12455889999999999999999983 3222 2222221
Q ss_pred HHHHHHHHHhcCCCCCCCCChHHHHHHHHHHH-HhcCCCcEEEEEeCCCCCC------------hH----HHhhhcc--C
Q 042541 233 KAIVQKVLHHKGYPVPEFQTDEAAINDLERFF-KQMRIEAILLVLDDVWPGS------------ES----LLQKLGF--Q 293 (695)
Q Consensus 233 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~-~~l~~~~~LlVlDdv~~~~------------~~----~~~~l~~--~ 293 (695)
+++....+ +....++.++ ..-...+++|++|+++... +. ++..+.. .
T Consensus 522 -----~l~~~~vG---------ese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~ 587 (733)
T TIGR01243 522 -----EILSKWVG---------ESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQE 587 (733)
T ss_pred -----HHhhcccC---------cHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccC
Confidence 11111110 1122344555 3335678999999985321 11 1222221 1
Q ss_pred CCCCEEEEEcCCCC------C---CCCCeEecCCCChHHHHHHHHHhccCCCCCCCCCchHHHHHHHHhcCCch
Q 042541 294 LPDYKILVTSRSEF------P---QFGSVHYLKPLTYEAARTLFLHSANLQDGNSYIPDENIVSKILRACKGCP 358 (695)
Q Consensus 294 ~~gs~iivTtR~~~------~---~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~G~P 358 (695)
..+.-||.||.... . .....+.++..+.++-.++|+......... .......+++.|.|.-
T Consensus 588 ~~~v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~----~~~~l~~la~~t~g~s 657 (733)
T TIGR01243 588 LSNVVVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLA----EDVDLEELAEMTEGYT 657 (733)
T ss_pred CCCEEEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCC----ccCCHHHHHHHcCCCC
Confidence 12334555664431 1 234478888889999999987654322211 1112566778887753
No 215
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=96.96 E-value=0.0012 Score=62.19 Aligned_cols=98 Identities=17% Similarity=0.281 Sum_probs=65.4
Q ss_pred CCCCCCCcchHHHHHHHHHcCCceEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCCCCCHHHHHHHHHHhcC
Q 042541 165 PVISPGLDVPLKELKMELFKDGRQFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSKNPNVKAIVQKVLHHKG 244 (695)
Q Consensus 165 ~~~~vGr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~~~~~~~~~~~i~~~l~ 244 (695)
-..+||-++.++++.-...+++.+-+.|.||+|+||||-+..+++. -+...+..+++=.+.|+...+.-+-..|
T Consensus 26 l~dIVGNe~tv~rl~via~~gnmP~liisGpPG~GKTTsi~~LAr~-LLG~~~ke~vLELNASdeRGIDvVRn~I----- 99 (333)
T KOG0991|consen 26 LQDIVGNEDTVERLSVIAKEGNMPNLIISGPPGTGKTTSILCLARE-LLGDSYKEAVLELNASDERGIDVVRNKI----- 99 (333)
T ss_pred HHHhhCCHHHHHHHHHHHHcCCCCceEeeCCCCCchhhHHHHHHHH-HhChhhhhHhhhccCccccccHHHHHHH-----
Confidence 3567999999999987777888999999999999999998888772 2233444445555555544333222222
Q ss_pred CCCCCCCChHHHHHHHHHHH-Hh--c-CCCcEEEEEeCCCCCCh
Q 042541 245 YPVPEFQTDEAAINDLERFF-KQ--M-RIEAILLVLDDVWPGSE 284 (695)
Q Consensus 245 ~~~~~~~~~~~~~~~l~~~~-~~--l-~~~~~LlVlDdv~~~~~ 284 (695)
+..- +. + .++--++|||.+++...
T Consensus 100 ----------------K~FAQ~kv~lp~grhKIiILDEADSMT~ 127 (333)
T KOG0991|consen 100 ----------------KMFAQKKVTLPPGRHKIIILDEADSMTA 127 (333)
T ss_pred ----------------HHHHHhhccCCCCceeEEEeeccchhhh
Confidence 2111 11 1 46677899999987653
No 216
>PRK04296 thymidine kinase; Provisional
Probab=96.93 E-value=0.002 Score=61.23 Aligned_cols=110 Identities=9% Similarity=0.038 Sum_probs=60.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCCCCCHHHHHHHHHHhcCCCCCC--CCChHHHHHHHHHHHH
Q 042541 188 QFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSKNPNVKAIVQKVLHHKGYPVPE--FQTDEAAINDLERFFK 265 (695)
Q Consensus 188 ~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~--~~~~~~~~~~l~~~~~ 265 (695)
.++.|+|+.|.||||+|..++. +...+-.. ++.+. ..++.......+..+++..... .....+....+. +
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~--~~~~~g~~-v~i~k--~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~---~ 74 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAY--NYEERGMK-VLVFK--PAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIE---E 74 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHH--HHHHcCCe-EEEEe--ccccccccCCcEecCCCCcccceEeCChHHHHHHHH---h
Confidence 5788999999999999988887 44333222 44442 1112222234456666543222 111222222222 2
Q ss_pred hcCCCcEEEEEeCCCCCChH-HHhhhcc-CCCCCEEEEEcCCC
Q 042541 266 QMRIEAILLVLDDVWPGSES-LLQKLGF-QLPDYKILVTSRSE 306 (695)
Q Consensus 266 ~l~~~~~LlVlDdv~~~~~~-~~~~l~~-~~~gs~iivTtR~~ 306 (695)
..++.-+||+|.+...... +.+.+.. ...|..||+|.+..
T Consensus 75 -~~~~~dvviIDEaq~l~~~~v~~l~~~l~~~g~~vi~tgl~~ 116 (190)
T PRK04296 75 -EGEKIDCVLIDEAQFLDKEQVVQLAEVLDDLGIPVICYGLDT 116 (190)
T ss_pred -hCCCCCEEEEEccccCCHHHHHHHHHHHHHcCCeEEEEecCc
Confidence 2345569999999655333 3332322 34688999998865
No 217
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=96.92 E-value=7.1e-05 Score=72.72 Aligned_cols=61 Identities=20% Similarity=0.322 Sum_probs=37.3
Q ss_pred cccccccEEeecccc-CCcccccchhhhcccCCCccEEecccccccccCchh---hcCCCCCceeeccccc
Q 042541 620 VRMNHLQKVSLVMCN-VGQVFRNSTFRISDAFPNLLEMDIDYCNDLIELPDG---LCDIVSMEKLRITNCH 686 (695)
Q Consensus 620 ~~l~~L~~L~l~~~~-i~~~~~~~~~~l~~~l~~L~~L~l~~c~~l~~lP~~---i~~L~~L~~L~l~~~~ 686 (695)
.+.++|..|||+.|. ++. +.+..+- +++.|++|.++.|..+ .|.. +...++|.+|++.+|-
T Consensus 310 ~rcp~l~~LDLSD~v~l~~---~~~~~~~-kf~~L~~lSlsRCY~i--~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 310 RRCPNLVHLDLSDSVMLKN---DCFQEFF-KFNYLQHLSLSRCYDI--IPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred HhCCceeeeccccccccCc---hHHHHHH-hcchheeeehhhhcCC--ChHHeeeeccCcceEEEEecccc
Confidence 356777777777773 321 2221111 6777888888887643 4433 5666788888887763
No 218
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.92 E-value=0.0063 Score=70.73 Aligned_cols=164 Identities=12% Similarity=0.120 Sum_probs=90.5
Q ss_pred CCCCCcchHHHHHHHHHc-------------CCceEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCCCCCHH
Q 042541 167 ISPGLDVPLKELKMELFK-------------DGRQFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSKNPNVK 233 (695)
Q Consensus 167 ~~vGr~~~~~~l~~~L~~-------------~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~~~~~~ 233 (695)
.+.|.+..+++|.+++.. ...+-|.++|++|+|||+||+.+++ ..... .+.++.+.
T Consensus 179 di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~--~~~~~----~i~i~~~~----- 247 (733)
T TIGR01243 179 DIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVAN--EAGAY----FISINGPE----- 247 (733)
T ss_pred HhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHH--HhCCe----EEEEecHH-----
Confidence 468999999998887641 2246788999999999999999987 33221 22332211
Q ss_pred HHHHHHHHhcCCCCCCCCChHHHHHHHHHHH-HhcCCCcEEEEEeCCCCCC-----------hH----HHhhhccC-CCC
Q 042541 234 AIVQKVLHHKGYPVPEFQTDEAAINDLERFF-KQMRIEAILLVLDDVWPGS-----------ES----LLQKLGFQ-LPD 296 (695)
Q Consensus 234 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~-~~l~~~~~LlVlDdv~~~~-----------~~----~~~~l~~~-~~g 296 (695)
+ .... .......+..++ ......+.+|++|+++... .. ++..+... ..+
T Consensus 248 -i----~~~~---------~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~ 313 (733)
T TIGR01243 248 -I----MSKY---------YGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRG 313 (733)
T ss_pred -H----hccc---------ccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCC
Confidence 1 1110 001123344444 3335667899999985421 01 12212111 123
Q ss_pred CEEEE-EcCCCC------C---CCCCeEecCCCChHHHHHHHHHhccCCCCCCCCCchHHHHHHHHhcCCchh
Q 042541 297 YKILV-TSRSEF------P---QFGSVHYLKPLTYEAARTLFLHSANLQDGNSYIPDENIVSKILRACKGCPL 359 (695)
Q Consensus 297 s~iiv-TtR~~~------~---~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PL 359 (695)
..++| ||.... . .....+.+...+.++-.+++......... ........+++.+.|.--
T Consensus 314 ~vivI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l----~~d~~l~~la~~t~G~~g 382 (733)
T TIGR01243 314 RVIVIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPL----AEDVDLDKLAEVTHGFVG 382 (733)
T ss_pred CEEEEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCC----ccccCHHHHHHhCCCCCH
Confidence 34444 443321 1 12236778888888888888754422111 112236778888888653
No 219
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=96.92 E-value=7.7e-05 Score=64.16 Aligned_cols=96 Identities=17% Similarity=0.157 Sum_probs=74.2
Q ss_pred ChhhcCCCCCcEEEEcccCCCCcccCcccccccCCCCcEEEeccCCCCCcc-cccccccccEEeeccccCCcccccchhh
Q 042541 567 PDFLQKMDELKVLIVTNYGFSPAELNNFRVLSALSKLKKIRLEHVSLPNSL-ATVRMNHLQKVSLVMCNVGQVFRNSTFR 645 (695)
Q Consensus 567 p~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~lp-~i~~l~~L~~L~l~~~~i~~~~~~~~~~ 645 (695)
+-.+.+...|...+|++|++..-. +.+ -...+.+..|+|.+|.+..+| ++..++.|+.|+++.|++...|..+.
T Consensus 46 vy~l~~~~el~~i~ls~N~fk~fp-~kf--t~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~-- 120 (177)
T KOG4579|consen 46 VYMLSKGYELTKISLSDNGFKKFP-KKF--TIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAEPRVIA-- 120 (177)
T ss_pred HHHHhCCceEEEEecccchhhhCC-HHH--hhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccchHHHH--
Confidence 345667778889999998773110 111 233456888999999999999 99999999999999999999888777
Q ss_pred hcccCCCccEEecccccccccCchhh
Q 042541 646 ISDAFPNLLEMDIDYCNDLIELPDGL 671 (695)
Q Consensus 646 l~~~l~~L~~L~l~~c~~l~~lP~~i 671 (695)
.|.+|-.|+..++ -...+|-.+
T Consensus 121 ---~L~~l~~Lds~~n-a~~eid~dl 142 (177)
T KOG4579|consen 121 ---PLIKLDMLDSPEN-ARAEIDVDL 142 (177)
T ss_pred ---HHHhHHHhcCCCC-ccccCcHHH
Confidence 7888888888874 466777653
No 220
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.91 E-value=0.01 Score=57.02 Aligned_cols=163 Identities=12% Similarity=0.133 Sum_probs=91.7
Q ss_pred CCCCCCcchHHH---HHHHHHcCC------ceEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCCCCCHHHHH
Q 042541 166 VISPGLDVPLKE---LKMELFKDG------RQFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSKNPNVKAIV 236 (695)
Q Consensus 166 ~~~vGr~~~~~~---l~~~L~~~~------~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~~~~~~~~~ 236 (695)
+.+||-++...+ |.+.|.+++ ++-|..+|++|.|||-+|+++++ ..+.-|- -|.. .+
T Consensus 121 ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalan--e~kvp~l----~vka------t~-- 186 (368)
T COG1223 121 DDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALAN--EAKVPLL----LVKA------TE-- 186 (368)
T ss_pred hhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhc--ccCCceE----Eech------HH--
Confidence 456898876554 445565442 78899999999999999999998 3333221 2211 11
Q ss_pred HHHHHhcCCCCCCCCChHHHHHHHHHHH-HhcCCCcEEEEEeCCCCCC-----h-------HHHhhhccC------CCCC
Q 042541 237 QKVLHHKGYPVPEFQTDEAAINDLERFF-KQMRIEAILLVLDDVWPGS-----E-------SLLQKLGFQ------LPDY 297 (695)
Q Consensus 237 ~~i~~~l~~~~~~~~~~~~~~~~l~~~~-~~l~~~~~LlVlDdv~~~~-----~-------~~~~~l~~~------~~gs 297 (695)
-|-+.. .+...+++++. ..-+.-+|++.+|.++... + ....++... ..|.
T Consensus 187 -liGehV----------Gdgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGV 255 (368)
T COG1223 187 -LIGEHV----------GDGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGV 255 (368)
T ss_pred -HHHHHh----------hhHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCce
Confidence 122222 23345566666 4445679999999975332 1 122233221 2244
Q ss_pred EEEEEcCCC-CC------CCCCeEecCCCChHHHHHHHHHhccCCCCCCCCCchHHHHHHHHhcCCc
Q 042541 298 KILVTSRSE-FP------QFGSVHYLKPLTYEAARTLFLHSANLQDGNSYIPDENIVSKILRACKGC 357 (695)
Q Consensus 298 ~iivTtR~~-~~------~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~G~ 357 (695)
..|-.|... .. .....++..--+++|-.+++...+..-. .+.....+.++++.+|+
T Consensus 256 vtIaaTN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~P----lpv~~~~~~~~~~t~g~ 318 (368)
T COG1223 256 VTIAATNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKKFP----LPVDADLRYLAAKTKGM 318 (368)
T ss_pred EEEeecCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHHHhCC----CccccCHHHHHHHhCCC
Confidence 444444333 11 1223555555678888888887764322 22233366777777774
No 221
>PHA00729 NTP-binding motif containing protein
Probab=96.89 E-value=0.0052 Score=59.14 Aligned_cols=33 Identities=21% Similarity=0.278 Sum_probs=27.0
Q ss_pred HHHHHHHcCCceEEEEEcCCCCcHHHHHHHHhc
Q 042541 177 ELKMELFKDGRQFIVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 177 ~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~~~~ 209 (695)
++++.+...+...|.|+|.+|+||||||..+.+
T Consensus 7 ~~~~~l~~~~f~nIlItG~pGvGKT~LA~aLa~ 39 (226)
T PHA00729 7 KIVSAYNNNGFVSAVIFGKQGSGKTTYALKVAR 39 (226)
T ss_pred HHHHHHhcCCeEEEEEECCCCCCHHHHHHHHHH
Confidence 445555556667899999999999999999987
No 222
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=96.88 E-value=0.0005 Score=68.62 Aligned_cols=87 Identities=21% Similarity=0.227 Sum_probs=42.9
Q ss_pred cCCCCcEEEeccCCCC--C---cc-cccccccccEEeeccccCCcccccchh-hhcccCCCccEEeccccccccc----C
Q 042541 599 ALSKLKKIRLEHVSLP--N---SL-ATVRMNHLQKVSLVMCNVGQVFRNSTF-RISDAFPNLLEMDIDYCNDLIE----L 667 (695)
Q Consensus 599 ~l~~L~~L~L~~~~l~--~---lp-~i~~l~~L~~L~l~~~~i~~~~~~~~~-~l~~~l~~L~~L~l~~c~~l~~----l 667 (695)
..++|+.+.+..|.|. . +- .+..++||+.|||+.|-++..-..... .+| .+++|+.|++++|..-.. +
T Consensus 183 ~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~-s~~~L~El~l~dcll~~~Ga~a~ 261 (382)
T KOG1909|consen 183 SHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALS-SWPHLRELNLGDCLLENEGAIAF 261 (382)
T ss_pred hccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhc-ccchheeecccccccccccHHHH
Confidence 3445555555555543 1 12 455666777777776655432211111 111 566677777776642211 1
Q ss_pred chhh-cCCCCCceeeccccc
Q 042541 668 PDGL-CDIVSMEKLRITNCH 686 (695)
Q Consensus 668 P~~i-~~L~~L~~L~l~~~~ 686 (695)
-..+ ...++|++|.+.+|.
T Consensus 262 ~~al~~~~p~L~vl~l~gNe 281 (382)
T KOG1909|consen 262 VDALKESAPSLEVLELAGNE 281 (382)
T ss_pred HHHHhccCCCCceeccCcch
Confidence 1111 235667777766654
No 223
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=96.86 E-value=0.014 Score=67.63 Aligned_cols=106 Identities=18% Similarity=0.203 Sum_probs=61.8
Q ss_pred CCCCCCcchHHHHHHHHHc-------C--CceEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCCCCCHHHHH
Q 042541 166 VISPGLDVPLKELKMELFK-------D--GRQFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSKNPNVKAIV 236 (695)
Q Consensus 166 ~~~vGr~~~~~~l~~~L~~-------~--~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~~~~~~~~~ 236 (695)
..++|-+..++.+...+.. + ...++.++|+.|+|||+||+.++. .. + ...+.++.++......+
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~--~l---~-~~~~~~d~se~~~~~~~- 526 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAE--AL---G-VHLERFDMSEYMEKHTV- 526 (731)
T ss_pred cceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHH--Hh---c-CCeEEEeCchhhhcccH-
Confidence 4678988888888887762 1 134688999999999999999987 33 1 22556776653322111
Q ss_pred HHHHHhcCCCCCCCCChHHHHHHHHHHHHhcCCCcEEEEEeCCCCCChH
Q 042541 237 QKVLHHKGYPVPEFQTDEAAINDLERFFKQMRIEAILLVLDDVWPGSES 285 (695)
Q Consensus 237 ~~i~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~~~LlVlDdv~~~~~~ 285 (695)
...++.+ +.....+ ....+.+.++ +....+++||+++.....
T Consensus 527 ---~~lig~~-~gyvg~~-~~~~l~~~~~--~~p~~VvllDEieka~~~ 568 (731)
T TIGR02639 527 ---SRLIGAP-PGYVGFE-QGGLLTEAVR--KHPHCVLLLDEIEKAHPD 568 (731)
T ss_pred ---HHHhcCC-CCCcccc-hhhHHHHHHH--hCCCeEEEEechhhcCHH
Confidence 1112221 1111111 1112222222 234569999999877755
No 224
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=96.83 E-value=0.0092 Score=62.25 Aligned_cols=117 Identities=15% Similarity=0.184 Sum_probs=72.9
Q ss_pred CCCCcchHHHHHHHHH-cCCceE-EEEEcCCCCcHHHHHHHHhcccccccc---------------------CCCcEEEE
Q 042541 168 SPGLDVPLKELKMELF-KDGRQF-IVVSAPGGYGKTTLVQRLCKDDQVQGK---------------------FKDDIFYV 224 (695)
Q Consensus 168 ~vGr~~~~~~l~~~L~-~~~~~v-v~I~G~gGiGKTtLa~~~~~~~~~~~~---------------------f~~~~~wv 224 (695)
++|-+....++..+.. .++.+. +.++|+.|+||||+|..+++. +-.. .+. +..+
T Consensus 3 ~~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~--l~~~~~~~~~~~~~~~~~~~~~~~~~~d-~lel 79 (325)
T COG0470 3 LVPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKE--LLCENPTGLLPCGHCRSCKLIPAGNHPD-FLEL 79 (325)
T ss_pred cccchhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHH--HhCCCcccCCcccchhhhhHHhhcCCCc-eEEe
Confidence 5777888888888887 444444 999999999999999999873 3211 122 4444
Q ss_pred EeCCCCC---HHHHHHHHHHhcCCCCCCCCChHHHHHHHHHHHHhcCCCcEEEEEeCCCCCChH----HHhhhccCCCCC
Q 042541 225 TVSKNPN---VKAIVQKVLHHKGYPVPEFQTDEAAINDLERFFKQMRIEAILLVLDDVWPGSES----LLQKLGFQLPDY 297 (695)
Q Consensus 225 ~~~~~~~---~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~~~LlVlDdv~~~~~~----~~~~l~~~~~gs 297 (695)
+.+.... ..+..+++.+...... ..++.-++++|+++..... ++..+......+
T Consensus 80 ~~s~~~~~~i~~~~vr~~~~~~~~~~-------------------~~~~~kviiidead~mt~~A~nallk~lEep~~~~ 140 (325)
T COG0470 80 NPSDLRKIDIIVEQVRELAEFLSESP-------------------LEGGYKVVIIDEADKLTEDAANALLKTLEEPPKNT 140 (325)
T ss_pred cccccCCCcchHHHHHHHHHHhccCC-------------------CCCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCe
Confidence 4444333 2233333333322111 1367889999999877653 334444455678
Q ss_pred EEEEEcCCC
Q 042541 298 KILVTSRSE 306 (695)
Q Consensus 298 ~iivTtR~~ 306 (695)
.+|++|...
T Consensus 141 ~~il~~n~~ 149 (325)
T COG0470 141 RFILITNDP 149 (325)
T ss_pred EEEEEcCCh
Confidence 888888754
No 225
>PRK06526 transposase; Provisional
Probab=96.83 E-value=0.0028 Score=63.05 Aligned_cols=24 Identities=33% Similarity=0.415 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcc
Q 042541 187 RQFIVVSAPGGYGKTTLVQRLCKD 210 (695)
Q Consensus 187 ~~vv~I~G~gGiGKTtLa~~~~~~ 210 (695)
..-+.|+|++|+|||+||..+.+.
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~ 121 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIR 121 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHH
Confidence 456899999999999999999873
No 226
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=96.82 E-value=0.0014 Score=67.48 Aligned_cols=46 Identities=20% Similarity=0.267 Sum_probs=39.3
Q ss_pred CCCCCCCcchHHHHHHHHHc------CCceEEEEEcCCCCcHHHHHHHHhcc
Q 042541 165 PVISPGLDVPLKELKMELFK------DGRQFIVVSAPGGYGKTTLVQRLCKD 210 (695)
Q Consensus 165 ~~~~vGr~~~~~~l~~~L~~------~~~~vv~I~G~gGiGKTtLa~~~~~~ 210 (695)
...++|.++.++++++++.. ...+++.++|++|+||||||..+.+.
T Consensus 50 ~~~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~ 101 (361)
T smart00763 50 DHDFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRG 101 (361)
T ss_pred chhccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 33689999999999999872 23588999999999999999999873
No 227
>PRK09183 transposase/IS protein; Provisional
Probab=96.82 E-value=0.0049 Score=61.69 Aligned_cols=23 Identities=39% Similarity=0.486 Sum_probs=20.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhc
Q 042541 187 RQFIVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 187 ~~vv~I~G~gGiGKTtLa~~~~~ 209 (695)
...+.|+|++|+|||+||..+.+
T Consensus 102 ~~~v~l~Gp~GtGKThLa~al~~ 124 (259)
T PRK09183 102 NENIVLLGPSGVGKTHLAIALGY 124 (259)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHH
Confidence 35688999999999999999976
No 228
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.80 E-value=0.031 Score=62.71 Aligned_cols=167 Identities=13% Similarity=0.107 Sum_probs=96.8
Q ss_pred CCCCCCcchH---HHHHHHHHcCC---------ceEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCCCCCHH
Q 042541 166 VISPGLDVPL---KELKMELFKDG---------RQFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSKNPNVK 233 (695)
Q Consensus 166 ~~~vGr~~~~---~~l~~~L~~~~---------~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~~~~~~ 233 (695)
.++.|-++.. ++++.+|.+++ ++=|.++|++|.|||-||++++-.. ++=+++++..
T Consensus 311 kDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEA--------gVPF~svSGS---- 378 (774)
T KOG0731|consen 311 KDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEA--------GVPFFSVSGS---- 378 (774)
T ss_pred ccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhccc--------CCceeeechH----
Confidence 4567877654 45555565432 5668999999999999999998732 2446666653
Q ss_pred HHHHHHHHhcCCCCCCCCChHHHHHHHHHHH-HhcCCCcEEEEEeCCCCCC---------------hHHHhhhc----cC
Q 042541 234 AIVQKVLHHKGYPVPEFQTDEAAINDLERFF-KQMRIEAILLVLDDVWPGS---------------ESLLQKLG----FQ 293 (695)
Q Consensus 234 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~-~~l~~~~~LlVlDdv~~~~---------------~~~~~~l~----~~ 293 (695)
+.++.+.+.. ..+++.++ ..-...++++.+|+++... +.-+..+. -.
T Consensus 379 ----EFvE~~~g~~---------asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf 445 (774)
T KOG0731|consen 379 ----EFVEMFVGVG---------ASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGF 445 (774)
T ss_pred ----HHHHHhcccc---------hHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCC
Confidence 2233322211 23344444 3335778999999874322 11111221 11
Q ss_pred CCCC-EEEE-EcCCC------CCCCC---CeEecCCCChHHHHHHHHHhccCCCCCCCCCchHHHHHHHHhcCCchhH
Q 042541 294 LPDY-KILV-TSRSE------FPQFG---SVHYLKPLTYEAARTLFLHSANLQDGNSYIPDENIVSKILRACKGCPLA 360 (695)
Q Consensus 294 ~~gs-~iiv-TtR~~------~~~~~---~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLa 360 (695)
..+. .|++ +|... ....| ..+.++.-+.....++|..++...... .+..++.+ |+...-|.+=|
T Consensus 446 ~~~~~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~--~e~~dl~~-~a~~t~gf~ga 520 (774)
T KOG0731|consen 446 ETSKGVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLD--DEDVDLSK-LASLTPGFSGA 520 (774)
T ss_pred cCCCcEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCC--cchhhHHH-HHhcCCCCcHH
Confidence 2223 3333 33332 12233 377888888888899999887554432 23455566 88888888744
No 229
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.76 E-value=0.00099 Score=58.23 Aligned_cols=21 Identities=43% Similarity=0.781 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 042541 189 FIVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 189 vv~I~G~gGiGKTtLa~~~~~ 209 (695)
+|+|.|++|+||||+|+.+.+
T Consensus 1 vI~I~G~~gsGKST~a~~La~ 21 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAE 21 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999987
No 230
>PHA02244 ATPase-like protein
Probab=96.75 E-value=0.011 Score=61.08 Aligned_cols=49 Identities=6% Similarity=0.094 Sum_probs=32.1
Q ss_pred CCCCCCCCCCCCCcchHHH----HHHHHHcCCceEEEEEcCCCCcHHHHHHHHhc
Q 042541 159 CSAPDPPVISPGLDVPLKE----LKMELFKDGRQFIVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 159 ~~~~~~~~~~vGr~~~~~~----l~~~L~~~~~~vv~I~G~gGiGKTtLa~~~~~ 209 (695)
..+......++|....... +..++..+ .-|.|+|++|+|||+||+++++
T Consensus 89 ~~l~~~d~~~ig~sp~~~~~~~ri~r~l~~~--~PVLL~GppGtGKTtLA~aLA~ 141 (383)
T PHA02244 89 GDISGIDTTKIASNPTFHYETADIAKIVNAN--IPVFLKGGAGSGKNHIAEQIAE 141 (383)
T ss_pred CchhhCCCcccCCCHHHHHHHHHHHHHHhcC--CCEEEECCCCCCHHHHHHHHHH
Confidence 3344444556776655443 33333332 3467899999999999999987
No 231
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.72 E-value=0.0069 Score=58.74 Aligned_cols=47 Identities=17% Similarity=0.288 Sum_probs=34.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCCCCCHHHHHH
Q 042541 187 RQFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSKNPNVKAIVQ 237 (695)
Q Consensus 187 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~~~~~~~~~~ 237 (695)
..++.|+|++|+|||+++.+++.. .... ...++|++... ++...+.+
T Consensus 12 g~i~~i~G~~GsGKT~l~~~~~~~--~~~~-g~~v~yi~~e~-~~~~rl~~ 58 (209)
T TIGR02237 12 GTITQIYGPPGSGKTNICMILAVN--AARQ-GKKVVYIDTEG-LSPERFKQ 58 (209)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH--HHhC-CCeEEEEECCC-CCHHHHHH
Confidence 589999999999999999988763 2222 23488999976 66555443
No 232
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=96.70 E-value=0.01 Score=58.71 Aligned_cols=50 Identities=18% Similarity=0.218 Sum_probs=35.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhccccccccC---CCcEEEEEeCCCCCHHHHH
Q 042541 187 RQFIVVSAPGGYGKTTLVQRLCKDDQVQGKF---KDDIFYVTVSKNPNVKAIV 236 (695)
Q Consensus 187 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f---~~~~~wv~~~~~~~~~~~~ 236 (695)
..++.|+|.+|+|||+||.+++-.......+ ..+++|++..+.++...+.
T Consensus 19 g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~ 71 (235)
T cd01123 19 GSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLV 71 (235)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHH
Confidence 5789999999999999999887532222211 2358899998877665443
No 233
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=96.69 E-value=0.0075 Score=65.18 Aligned_cols=181 Identities=18% Similarity=0.166 Sum_probs=106.6
Q ss_pred CCCCCCcchHHHHHHHHHcCC-ceEEEEEcCCCCcHHHHHHHHhcccccc--ccCCCcEEEEEeCCCCCHHHHHHHHHHh
Q 042541 166 VISPGLDVPLKELKMELFKDG-RQFIVVSAPGGYGKTTLVQRLCKDDQVQ--GKFKDDIFYVTVSKNPNVKAIVQKVLHH 242 (695)
Q Consensus 166 ~~~vGr~~~~~~l~~~L~~~~-~~vv~I~G~gGiGKTtLa~~~~~~~~~~--~~f~~~~~wv~~~~~~~~~~~~~~i~~~ 242 (695)
+.+||-+.-...|...+..+. ..--...|+-|+||||+|+-++.-.--. .... .+.++. ..+.|...
T Consensus 16 ~evvGQe~v~~~L~nal~~~ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~e------PC~~C~----~Ck~I~~g 85 (515)
T COG2812 16 DDVVGQEHVVKTLSNALENGRIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAE------PCGKCI----SCKEINEG 85 (515)
T ss_pred HHhcccHHHHHHHHHHHHhCcchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCC------cchhhh----hhHhhhcC
Confidence 346999999999999988665 3445688999999999999887521111 1111 111111 11112111
Q ss_pred cCCCCCCCC-ChHHHHHHHHHHHHhc-----CCCcEEEEEeCCCCCChH----HHhhhccCCCCCEEEEEcCCCCCCCC-
Q 042541 243 KGYPVPEFQ-TDEAAINDLERFFKQM-----RIEAILLVLDDVWPGSES----LLQKLGFQLPDYKILVTSRSEFPQFG- 311 (695)
Q Consensus 243 l~~~~~~~~-~~~~~~~~l~~~~~~l-----~~~~~LlVlDdv~~~~~~----~~~~l~~~~~gs~iivTtR~~~~~~~- 311 (695)
-....-+.+ .....++.++++.+.. +++.-+.|+|+|.-.... +++.+....+..+.|+.|.+......
T Consensus 86 ~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~Kip~T 165 (515)
T COG2812 86 SLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQKIPNT 165 (515)
T ss_pred CcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCcCcCchh
Confidence 000000000 0011244455555333 577779999999766543 44444445557777777776632221
Q ss_pred -----CeEecCCCChHHHHHHHHHhccCCCCCCCCCchHHHHHHHHhcCCchh
Q 042541 312 -----SVHYLKPLTYEAARTLFLHSANLQDGNSYIPDENIVSKILRACKGCPL 359 (695)
Q Consensus 312 -----~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PL 359 (695)
-.|.++.++.++-...+...+..... .-.++....|++..+|...
T Consensus 166 IlSRcq~f~fkri~~~~I~~~L~~i~~~E~I---~~e~~aL~~ia~~a~Gs~R 215 (515)
T COG2812 166 ILSRCQRFDFKRLDLEEIAKHLAAILDKEGI---NIEEDALSLIARAAEGSLR 215 (515)
T ss_pred hhhccccccccCCCHHHHHHHHHHHHHhcCC---ccCHHHHHHHHHHcCCChh
Confidence 27899999999988888887754433 2246677888888888554
No 234
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=96.68 E-value=0.034 Score=57.45 Aligned_cols=81 Identities=16% Similarity=0.078 Sum_probs=49.4
Q ss_pred CCcEEEEEeCCCCCChH----HHhhhccCCCCCEEEEEcCCCCCCC------CCeEecCCCChHHHHHHHHHhccCCCCC
Q 042541 269 IEAILLVLDDVWPGSES----LLQKLGFQLPDYKILVTSRSEFPQF------GSVHYLKPLTYEAARTLFLHSANLQDGN 338 (695)
Q Consensus 269 ~~~~LlVlDdv~~~~~~----~~~~l~~~~~gs~iivTtR~~~~~~------~~~~~l~~L~~~ea~~Lf~~~~~~~~~~ 338 (695)
+++-++|+|++...+.. +++.+.....++.+|++|.+..... ...+.+.+++.+++.+.+.... .
T Consensus 112 ~~~kV~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~SRc~~~~~~~~~~~~~~~~L~~~~----~- 186 (325)
T PRK08699 112 GGLRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRCRKMVLPAPSHEEALAYLRERG----V- 186 (325)
T ss_pred CCceEEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHHHHHhhhhcCCCCCHHHHHHHHHhcC----C-
Confidence 45556677888776643 4444444445677777777653211 2278899999999988886531 1
Q ss_pred CCCCchHHHHHHHHhcCCchhH
Q 042541 339 SYIPDENIVSKILRACKGCPLA 360 (695)
Q Consensus 339 ~~~~~~~~~~~I~~~c~G~PLa 360 (695)
. ... . .+..++|.|+.
T Consensus 187 -~--~~~--~-~l~~~~g~p~~ 202 (325)
T PRK08699 187 -A--EPE--E-RLAFHSGAPLF 202 (325)
T ss_pred -C--cHH--H-HHHHhCCChhh
Confidence 1 111 1 23568898954
No 235
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=96.65 E-value=0.01 Score=61.37 Aligned_cols=57 Identities=18% Similarity=0.290 Sum_probs=40.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcccccccc---CCCcEEEEEeCCCCCHHHHHHHHHHhcC
Q 042541 187 RQFIVVSAPGGYGKTTLVQRLCKDDQVQGK---FKDDIFYVTVSKNPNVKAIVQKVLHHKG 244 (695)
Q Consensus 187 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~---f~~~~~wv~~~~~~~~~~~~~~i~~~l~ 244 (695)
..++-|+|.+|+|||+++.+++........ -...++||+..+.++.+.+. ++++.++
T Consensus 95 g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~-~~~~~~g 154 (310)
T TIGR02236 95 QAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIM-QMAEARG 154 (310)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHH-HHHHHcC
Confidence 578899999999999999988764222111 12248899999988877654 4445544
No 236
>PRK08939 primosomal protein DnaI; Reviewed
Probab=96.65 E-value=0.011 Score=60.60 Aligned_cols=113 Identities=13% Similarity=0.067 Sum_probs=64.9
Q ss_pred CCcchHHHHHHHHHc----CCceEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCCCCCHHHHHHHHHHhcCC
Q 042541 170 GLDVPLKELKMELFK----DGRQFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSKNPNVKAIVQKVLHHKGY 245 (695)
Q Consensus 170 Gr~~~~~~l~~~L~~----~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~~~~~~~~~~~i~~~l~~ 245 (695)
+|....+...+++.. ...+-+.|+|..|+|||.||.++++..- ...+. +.+++++ +++..+....+.
T Consensus 135 ~~~~~~~~~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~Aia~~l~-~~g~~--v~~~~~~------~l~~~lk~~~~~ 205 (306)
T PRK08939 135 DRLDALMAALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAAIANELA-KKGVS--STLLHFP------EFIRELKNSISD 205 (306)
T ss_pred HHHHHHHHHHHHHHHhhccCCCCeEEEECCCCCCHHHHHHHHHHHHH-HcCCC--EEEEEHH------HHHHHHHHHHhc
Confidence 344444444555542 1346799999999999999999998422 22333 5577664 455666555432
Q ss_pred CCCCCCChHHHHHHHHHHHHhcCCCcEEEEEeCCCCC--ChHHH----hhhcc-C-CCCCEEEEEcC
Q 042541 246 PVPEFQTDEAAINDLERFFKQMRIEAILLVLDDVWPG--SESLL----QKLGF-Q-LPDYKILVTSR 304 (695)
Q Consensus 246 ~~~~~~~~~~~~~~l~~~~~~l~~~~~LlVlDdv~~~--~~~~~----~~l~~-~-~~gs~iivTtR 304 (695)
. . +.+.++.+ .+-=||||||+... .+|.. ..+.. . ..+..+|+||-
T Consensus 206 ~-----~-------~~~~l~~l-~~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSN 259 (306)
T PRK08939 206 G-----S-------VKEKIDAV-KEAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSN 259 (306)
T ss_pred C-----c-------HHHHHHHh-cCCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECC
Confidence 1 1 12223333 35668999998543 23322 22211 1 24567888886
No 237
>PRK07261 topology modulation protein; Provisional
Probab=96.65 E-value=0.0035 Score=58.53 Aligned_cols=22 Identities=32% Similarity=0.496 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 042541 189 FIVVSAPGGYGKTTLVQRLCKD 210 (695)
Q Consensus 189 vv~I~G~gGiGKTtLa~~~~~~ 210 (695)
.|.|+|++|+||||||+.+...
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~ 23 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQH 23 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 4899999999999999998763
No 238
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=96.64 E-value=0.0057 Score=54.86 Aligned_cols=102 Identities=21% Similarity=0.290 Sum_probs=59.5
Q ss_pred CCCcchHHHHHHHHH--cCCceEEEEEcCCCCcHHHHHHHHhccccc-cccCCCcEEEEEeCCCCCHHHHHHHHHHhcCC
Q 042541 169 PGLDVPLKELKMELF--KDGRQFIVVSAPGGYGKTTLVQRLCKDDQV-QGKFKDDIFYVTVSKNPNVKAIVQKVLHHKGY 245 (695)
Q Consensus 169 vGr~~~~~~l~~~L~--~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~-~~~f~~~~~wv~~~~~~~~~~~~~~i~~~l~~ 245 (695)
||....++++.+.+. .....-|.|+|..|+||+++|+.+++.... ...|.. + ++....
T Consensus 1 vG~S~~~~~l~~~l~~~a~~~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~-~---~~~~~~--------------- 61 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAKSSSPVLITGEPGTGKSLLARALHRYSGRANGPFIV-I---DCASLP--------------- 61 (138)
T ss_dssp --SCHHHHHHHHHHHHHHCSSS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCC-C---CHHCTC---------------
T ss_pred CCCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEE-e---chhhCc---------------
Confidence 678888888888777 344567899999999999999988763221 112221 0 111100
Q ss_pred CCCCCCChHHHHHHHHHHHHhcCCCcEEEEEeCCCCCChH----HHhhhccC-CCCCEEEEEcCCC
Q 042541 246 PVPEFQTDEAAINDLERFFKQMRIEAILLVLDDVWPGSES----LLQKLGFQ-LPDYKILVTSRSE 306 (695)
Q Consensus 246 ~~~~~~~~~~~~~~l~~~~~~l~~~~~LlVlDdv~~~~~~----~~~~l~~~-~~gs~iivTtR~~ 306 (695)
.++++.. +.--|+|+|+...... +...+... ..+.|+|.||...
T Consensus 62 ---------------~~~l~~a--~~gtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~RlI~ss~~~ 110 (138)
T PF14532_consen 62 ---------------AELLEQA--KGGTLYLKNIDRLSPEAQRRLLDLLKRQERSNVRLIASSSQD 110 (138)
T ss_dssp ---------------HHHHHHC--TTSEEEEECGCCS-HHHHHHHHHHHHHCTTTTSEEEEEECC-
T ss_pred ---------------HHHHHHc--CCCEEEECChHHCCHHHHHHHHHHHHhcCCCCeEEEEEeCCC
Confidence 1222222 4556889999877643 33333322 4578999999865
No 239
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.63 E-value=0.0062 Score=60.30 Aligned_cols=82 Identities=16% Similarity=0.381 Sum_probs=49.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhccc--cccccCCCcEEEEEeCCCCCHHHHHHHHHHhcCCCCCCCCChHHHHHHHHHHH
Q 042541 187 RQFIVVSAPGGYGKTTLVQRLCKDD--QVQGKFKDDIFYVTVSKNPNVKAIVQKVLHHKGYPVPEFQTDEAAINDLERFF 264 (695)
Q Consensus 187 ~~vv~I~G~gGiGKTtLa~~~~~~~--~~~~~f~~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~ 264 (695)
.++|.++|++|.|||+|++++++.- |..+.|..++ .+.++. ..++.+...+-|. ......+.+++++
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~-liEins----hsLFSKWFsESgK------lV~kmF~kI~ELv 245 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQ-LIEINS----HSLFSKWFSESGK------LVAKMFQKIQELV 245 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheeeecCccccce-EEEEeh----hHHHHHHHhhhhh------HHHHHHHHHHHHH
Confidence 5899999999999999999999864 3456666533 555443 2344444433221 2233344455555
Q ss_pred HhcCCCcEEEEEeCCC
Q 042541 265 KQMRIEAILLVLDDVW 280 (695)
Q Consensus 265 ~~l~~~~~LlVlDdv~ 280 (695)
+. ++.-+.+.+|.|.
T Consensus 246 ~d-~~~lVfvLIDEVE 260 (423)
T KOG0744|consen 246 ED-RGNLVFVLIDEVE 260 (423)
T ss_pred hC-CCcEEEEEeHHHH
Confidence 22 3444566778874
No 240
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=96.61 E-value=0.0081 Score=58.98 Aligned_cols=45 Identities=16% Similarity=0.333 Sum_probs=33.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCCCCCHHHH
Q 042541 187 RQFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSKNPNVKAI 235 (695)
Q Consensus 187 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~~~~~~~~ 235 (695)
..++.|+|.+|+|||++|.+++.. .... ...++|++.. .++...+
T Consensus 23 g~i~~i~G~~GsGKT~l~~~la~~--~~~~-~~~v~yi~~e-~~~~~r~ 67 (225)
T PRK09361 23 GTITQIYGPPGSGKTNICLQLAVE--AAKN-GKKVIYIDTE-GLSPERF 67 (225)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH--HHHC-CCeEEEEECC-CCCHHHH
Confidence 579999999999999999988863 3222 2347899987 5555443
No 241
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.60 E-value=0.17 Score=53.07 Aligned_cols=142 Identities=19% Similarity=0.265 Sum_probs=78.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCCCCCHHHHHHHHHHhcCCCCCCCCChHHHHHHHHHHHHhc
Q 042541 188 QFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSKNPNVKAIVQKVLHHKGYPVPEFQTDEAAINDLERFFKQM 267 (695)
Q Consensus 188 ~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~~l 267 (695)
|=-.++||+|.|||+++.++++. .+..|.=+.++...+-.+ |++++-..
T Consensus 236 RGYLLYGPPGTGKSS~IaAmAn~------L~ydIydLeLt~v~~n~d-------------------------Lr~LL~~t 284 (457)
T KOG0743|consen 236 RGYLLYGPPGTGKSSFIAAMANY------LNYDIYDLELTEVKLDSD-------------------------LRHLLLAT 284 (457)
T ss_pred ccceeeCCCCCCHHHHHHHHHhh------cCCceEEeeeccccCcHH-------------------------HHHHHHhC
Confidence 45679999999999999999883 222244444443322222 44444322
Q ss_pred CCCcEEEEEeCCCCCCh------------H----------HHhhh---ccCCCCCEEEE-EcCCC------CCCCCC---
Q 042541 268 RIEAILLVLDDVWPGSE------------S----------LLQKL---GFQLPDYKILV-TSRSE------FPQFGS--- 312 (695)
Q Consensus 268 ~~~~~LlVlDdv~~~~~------------~----------~~~~l---~~~~~gs~iiv-TtR~~------~~~~~~--- 312 (695)
..+-+||+.|++...+ . ++..+ .....+-|||| ||-.. ....|.
T Consensus 285 -~~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~EkLDPALlRpGRmDm 363 (457)
T KOG0743|consen 285 -PNKSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDM 363 (457)
T ss_pred -CCCcEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCChhhcCHhhcCCCccee
Confidence 3455666676643211 0 11111 11112235655 66654 123333
Q ss_pred eEecCCCChHHHHHHHHHhccCCCCCCCCCchHHHHHHHHhcCCchhHHHHHHHh
Q 042541 313 VHYLKPLTYEAARTLFLHSANLQDGNSYIPDENIVSKILRACKGCPLALKVVGGS 367 (695)
Q Consensus 313 ~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~~~~ 367 (695)
.+.+.--+.+.-..||.+...... ...+..+|.+...|.-+.=..++..
T Consensus 364 hI~mgyCtf~~fK~La~nYL~~~~------~h~L~~eie~l~~~~~~tPA~V~e~ 412 (457)
T KOG0743|consen 364 HIYMGYCTFEAFKTLASNYLGIEE------DHRLFDEIERLIEETEVTPAQVAEE 412 (457)
T ss_pred EEEcCCCCHHHHHHHHHHhcCCCC------CcchhHHHHHHhhcCccCHHHHHHH
Confidence 678889999999999998875433 1234556666555554444444443
No 242
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.59 E-value=0.022 Score=60.27 Aligned_cols=91 Identities=16% Similarity=0.247 Sum_probs=56.9
Q ss_pred CCCCCcc---hHHHHHHHHHcCC---------ceEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCCCCCHHH
Q 042541 167 ISPGLDV---PLKELKMELFKDG---------RQFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSKNPNVKA 234 (695)
Q Consensus 167 ~~vGr~~---~~~~l~~~L~~~~---------~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~~~~~~~ 234 (695)
++-|-|+ |+++|+++|.++. ++=|.++|++|.|||-||++++-...+. ||...+..|+.
T Consensus 305 dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VP-------FF~~sGSEFdE-- 375 (752)
T KOG0734|consen 305 DVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVP-------FFYASGSEFDE-- 375 (752)
T ss_pred cccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCC-------eEeccccchhh--
Confidence 4567766 5677777777432 5779999999999999999998743221 12222222221
Q ss_pred HHHHHHHhcCCCCCCCCChHHHHHHHHHHH-HhcCCCcEEEEEeCCCCC
Q 042541 235 IVQKVLHHKGYPVPEFQTDEAAINDLERFF-KQMRIEAILLVLDDVWPG 282 (695)
Q Consensus 235 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~-~~l~~~~~LlVlDdv~~~ 282 (695)
++ ......+++.++ ..-..-+|+|.+|.++..
T Consensus 376 ----m~------------VGvGArRVRdLF~aAk~~APcIIFIDEiDav 408 (752)
T KOG0734|consen 376 ----MF------------VGVGARRVRDLFAAAKARAPCIIFIDEIDAV 408 (752)
T ss_pred ----hh------------hcccHHHHHHHHHHHHhcCCeEEEEechhhh
Confidence 11 111234566666 444577999999998543
No 243
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.58 E-value=0.028 Score=59.43 Aligned_cols=139 Identities=19% Similarity=0.233 Sum_probs=80.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCCCCCHHHHHHHHHHhcCCCCCCCCChHHHHHHHHHHH-H
Q 042541 187 RQFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSKNPNVKAIVQKVLHHKGYPVPEFQTDEAAINDLERFF-K 265 (695)
Q Consensus 187 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~-~ 265 (695)
..-+.+.|++|+|||+||..++. ...|+. + .+-. +++ -+|. +.......+...+ +
T Consensus 538 lvSvLl~Gp~~sGKTaLAA~iA~----~S~FPF-v---KiiS---pe~-------miG~------sEsaKc~~i~k~F~D 593 (744)
T KOG0741|consen 538 LVSVLLEGPPGSGKTALAAKIAL----SSDFPF-V---KIIS---PED-------MIGL------SESAKCAHIKKIFED 593 (744)
T ss_pred ceEEEEecCCCCChHHHHHHHHh----hcCCCe-E---EEeC---hHH-------ccCc------cHHHHHHHHHHHHHH
Confidence 45678999999999999999875 466775 3 2111 111 0111 2333455666666 6
Q ss_pred hcCCCcEEEEEeCCCCCChH----------HHhhhc----cCC-CCCEEEE-EcCCC---------CCCCCCeEecCCCC
Q 042541 266 QMRIEAILLVLDDVWPGSES----------LLQKLG----FQL-PDYKILV-TSRSE---------FPQFGSVHYLKPLT 320 (695)
Q Consensus 266 ~l~~~~~LlVlDdv~~~~~~----------~~~~l~----~~~-~gs~iiv-TtR~~---------~~~~~~~~~l~~L~ 320 (695)
..+..--.+|+||+...-+| +++.+. ... .|-|.+| +|.++ .......|.++.++
T Consensus 594 AYkS~lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~ 673 (744)
T KOG0741|consen 594 AYKSPLSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNLT 673 (744)
T ss_pred hhcCcceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCccC
Confidence 77888899999998654432 222222 122 2445444 33333 12344589999998
Q ss_pred h-HHHHHHHHHhc-cCCCCCCCCCchHHHHHHHHhc
Q 042541 321 Y-EAARTLFLHSA-NLQDGNSYIPDENIVSKILRAC 354 (695)
Q Consensus 321 ~-~ea~~Lf~~~~-~~~~~~~~~~~~~~~~~I~~~c 354 (695)
. ++..+.+...- |.+ ...+.++.+...+|
T Consensus 674 ~~~~~~~vl~~~n~fsd-----~~~~~~~~~~~~~~ 704 (744)
T KOG0741|consen 674 TGEQLLEVLEELNIFSD-----DEVRAIAEQLLSKK 704 (744)
T ss_pred chHHHHHHHHHccCCCc-----chhHHHHHHHhccc
Confidence 7 67777776532 221 22345566666666
No 244
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.56 E-value=0.00016 Score=69.64 Aligned_cols=101 Identities=15% Similarity=0.166 Sum_probs=57.3
Q ss_pred CCCCcEEEEcccCCCCcccCcccccccCCCCcEEEeccCCCCCcccccccccccEEeeccccCCcccccchhhhcccCCC
Q 042541 573 MDELKVLIVTNYGFSPAELNNFRVLSALSKLKKIRLEHVSLPNSLATVRMNHLQKVSLVMCNVGQVFRNSTFRISDAFPN 652 (695)
Q Consensus 573 l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~lp~i~~l~~L~~L~l~~~~i~~~~~~~~~~l~~~l~~ 652 (695)
+.+.+-|++.+|++. +.+.+..++.|++|.|+-|.|+++-.+..+++|+.|.|+.|.|..+.+-. .+- +|++
T Consensus 18 l~~vkKLNcwg~~L~-----DIsic~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~--YLk-nlps 89 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLD-----DISICEKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELE--YLK-NLPS 89 (388)
T ss_pred HHHhhhhcccCCCcc-----HHHHHHhcccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHH--HHh-cCch
Confidence 344555566665542 22335566667777777776666555666677777777777665543211 111 5666
Q ss_pred ccEEecccccccccCchh-----hcCCCCCceee
Q 042541 653 LLEMDIDYCNDLIELPDG-----LCDIVSMEKLR 681 (695)
Q Consensus 653 L~~L~l~~c~~l~~lP~~-----i~~L~~L~~L~ 681 (695)
|++|.|..|.-.+.-+.. +.-|++|+.||
T Consensus 90 Lr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 90 LRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 777777665555554432 44566666655
No 245
>PRK06696 uridine kinase; Validated
Probab=96.56 E-value=0.0027 Score=62.27 Aligned_cols=39 Identities=21% Similarity=0.243 Sum_probs=32.9
Q ss_pred CcchHHHHHHHHH---cCCceEEEEEcCCCCcHHHHHHHHhc
Q 042541 171 LDVPLKELKMELF---KDGRQFIVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 171 r~~~~~~l~~~L~---~~~~~vv~I~G~gGiGKTtLa~~~~~ 209 (695)
|++-+++|.+.+. .+...+|+|.|.+|+||||||+.+..
T Consensus 3 ~~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~ 44 (223)
T PRK06696 3 RKQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAE 44 (223)
T ss_pred HHHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHH
Confidence 5666778887775 34578999999999999999999987
No 246
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=96.56 E-value=0.017 Score=59.34 Aligned_cols=58 Identities=21% Similarity=0.229 Sum_probs=41.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcccccc---ccCCCcEEEEEeCCCCCHHHHHHHHHHhcCC
Q 042541 187 RQFIVVSAPGGYGKTTLVQRLCKDDQVQ---GKFKDDIFYVTVSKNPNVKAIVQKVLHHKGY 245 (695)
Q Consensus 187 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~---~~f~~~~~wv~~~~~~~~~~~~~~i~~~l~~ 245 (695)
..++-|+|++|+|||+|+..++-..... ..-...++|++....++++.+.+ +++.++.
T Consensus 96 G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~~-~a~~~g~ 156 (313)
T TIGR02238 96 MSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRA-IAERFGV 156 (313)
T ss_pred CeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHHH-HHHHcCC
Confidence 4788899999999999998766422222 12234588999999988887754 4566554
No 247
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.48 E-value=0.0093 Score=65.41 Aligned_cols=73 Identities=18% Similarity=0.360 Sum_probs=55.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCCCCCHHHHHHHHHHhcCCCCCCCCChHHHHHHHHHHHHh
Q 042541 187 RQFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSKNPNVKAIVQKVLHHKGYPVPEFQTDEAAINDLERFFKQ 266 (695)
Q Consensus 187 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~~ 266 (695)
-++..++|++|+||||||+-++++ ..| .|+=|+.|+..+...+-..|...+.... .
T Consensus 326 kKilLL~GppGlGKTTLAHViAkq----aGY--sVvEINASDeRt~~~v~~kI~~avq~~s------------------~ 381 (877)
T KOG1969|consen 326 KKILLLCGPPGLGKTTLAHVIAKQ----AGY--SVVEINASDERTAPMVKEKIENAVQNHS------------------V 381 (877)
T ss_pred cceEEeecCCCCChhHHHHHHHHh----cCc--eEEEecccccccHHHHHHHHHHHHhhcc------------------c
Confidence 589999999999999999998863 233 3668888988888777777766653221 1
Q ss_pred c--CCCcEEEEEeCCCCCC
Q 042541 267 M--RIEAILLVLDDVWPGS 283 (695)
Q Consensus 267 l--~~~~~LlVlDdv~~~~ 283 (695)
+ .+++..||+|.++...
T Consensus 382 l~adsrP~CLViDEIDGa~ 400 (877)
T KOG1969|consen 382 LDADSRPVCLVIDEIDGAP 400 (877)
T ss_pred cccCCCcceEEEecccCCc
Confidence 1 3788999999998766
No 248
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=96.48 E-value=0.014 Score=57.42 Aligned_cols=48 Identities=19% Similarity=0.205 Sum_probs=35.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhccccccccC-----CCcEEEEEeCCCCCHHHHH
Q 042541 187 RQFIVVSAPGGYGKTTLVQRLCKDDQVQGKF-----KDDIFYVTVSKNPNVKAIV 236 (695)
Q Consensus 187 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f-----~~~~~wv~~~~~~~~~~~~ 236 (695)
..++.|+|.+|+|||+||..++.. ....- +..++|++....++...+.
T Consensus 19 g~v~~I~G~~GsGKT~l~~~ia~~--~~~~~~~~g~~~~v~yi~~e~~~~~~rl~ 71 (226)
T cd01393 19 GRITEIFGEFGSGKTQLCLQLAVE--AQLPGELGGLEGKVVYIDTEGAFRPERLV 71 (226)
T ss_pred CcEEEEeCCCCCChhHHHHHHHHH--hhcccccCCCcceEEEEecCCCCCHHHHH
Confidence 579999999999999999988753 21121 1447899988877765543
No 249
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.47 E-value=0.0014 Score=63.20 Aligned_cols=82 Identities=21% Similarity=0.261 Sum_probs=57.7
Q ss_pred ccCCCCcEEEeccCCCC---CcccccccccccEEeeccc--cCCcccccchhhhcccCCCccEEecccccc--cccCchh
Q 042541 598 SALSKLKKIRLEHVSLP---NSLATVRMNHLQKVSLVMC--NVGQVFRNSTFRISDAFPNLLEMDIDYCND--LIELPDG 670 (695)
Q Consensus 598 ~~l~~L~~L~L~~~~l~---~lp~i~~l~~L~~L~l~~~--~i~~~~~~~~~~l~~~l~~L~~L~l~~c~~--l~~lP~~ 670 (695)
..+..|++|++.++.++ .+| .|++|++|.++.| ++..-.+.... .+++|++|++++|.. +..++.
T Consensus 40 d~~~~le~ls~~n~gltt~~~~P---~Lp~LkkL~lsdn~~~~~~~l~vl~e----~~P~l~~l~ls~Nki~~lstl~p- 111 (260)
T KOG2739|consen 40 DEFVELELLSVINVGLTTLTNFP---KLPKLKKLELSDNYRRVSGGLEVLAE----KAPNLKVLNLSGNKIKDLSTLRP- 111 (260)
T ss_pred ccccchhhhhhhccceeecccCC---CcchhhhhcccCCcccccccceehhh----hCCceeEEeecCCccccccccch-
Confidence 34556677777666654 566 8999999999999 54433333333 679999999999642 223332
Q ss_pred hcCCCCCceeecccccC
Q 042541 671 LCDIVSMEKLRITNCHR 687 (695)
Q Consensus 671 i~~L~~L~~L~l~~~~~ 687 (695)
+..+.+|..|++.+|..
T Consensus 112 l~~l~nL~~Ldl~n~~~ 128 (260)
T KOG2739|consen 112 LKELENLKSLDLFNCSV 128 (260)
T ss_pred hhhhcchhhhhcccCCc
Confidence 67888999999999873
No 250
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.47 E-value=0.03 Score=61.03 Aligned_cols=160 Identities=18% Similarity=0.259 Sum_probs=84.6
Q ss_pred CC-CcchHHHHHHHHH-------------cCCceEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCCCCCHHH
Q 042541 169 PG-LDVPLKELKMELF-------------KDGRQFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSKNPNVKA 234 (695)
Q Consensus 169 vG-r~~~~~~l~~~L~-------------~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~~~~~~~ 234 (695)
+| .++-..+|.+.+. -..++=|..+|++|+|||++|+++++ .-.-.| ++++..
T Consensus 436 IGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAn--e~~~nF------lsvkgp----- 502 (693)
T KOG0730|consen 436 IGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALAN--EAGMNF------LSVKGP----- 502 (693)
T ss_pred ccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhh--hhcCCe------eeccCH-----
Confidence 45 6665555555444 12367899999999999999999998 333333 333321
Q ss_pred HHHHHHHhcCCCCCCCCChHHHHHHHHHHH-HhcCCCcEEEEEeCCCCCC-----------hHHHhhhcc---CC-CCCE
Q 042541 235 IVQKVLHHKGYPVPEFQTDEAAINDLERFF-KQMRIEAILLVLDDVWPGS-----------ESLLQKLGF---QL-PDYK 298 (695)
Q Consensus 235 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~-~~l~~~~~LlVlDdv~~~~-----------~~~~~~l~~---~~-~gs~ 298 (695)
+++....+ .. ...++.++ ++-+--++++.||.++... +.++..+.. +. ....
T Consensus 503 ---EL~sk~vG------eS---Er~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~ 570 (693)
T KOG0730|consen 503 ---ELFSKYVG------ES---ERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKN 570 (693)
T ss_pred ---HHHHHhcC------ch---HHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccCc
Confidence 11211111 11 22334444 2223456899999874322 112222222 11 1223
Q ss_pred EE-E--EcCCC-----CCCCC---CeEecCCCChHHHHHHHHHhccCCCCCCCCCchHHHHHHHHhcCCc
Q 042541 299 IL-V--TSRSE-----FPQFG---SVHYLKPLTYEAARTLFLHSANLQDGNSYIPDENIVSKILRACKGC 357 (695)
Q Consensus 299 ii-v--TtR~~-----~~~~~---~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~G~ 357 (695)
|+ | |-|.. ....| ..+.++.-+.+.-.++|+.++....-.... ...+|++++.|.
T Consensus 571 V~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp~~~~v----dl~~La~~T~g~ 636 (693)
T KOG0730|consen 571 VLVIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKMPFSEDV----DLEELAQATEGY 636 (693)
T ss_pred EEEEeccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcCCCCccc----cHHHHHHHhccC
Confidence 33 3 33332 12333 367777778888889999887554432221 245566655554
No 251
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.46 E-value=0.013 Score=62.66 Aligned_cols=91 Identities=16% Similarity=0.203 Sum_probs=51.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCCC-CCHHHHHHHHHHhcCCCCCCCCChHHHHHHHHHHH
Q 042541 186 GRQFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSKN-PNVKAIVQKVLHHKGYPVPEFQTDEAAINDLERFF 264 (695)
Q Consensus 186 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~ 264 (695)
.+.+|.++|..|+||||+|..++. ..... ...+..+++... ....+.+..+.+.++.+........+....+...+
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~--~L~~~-g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al 170 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLAR--YFKKK-GLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGL 170 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH--HHHHc-CCeEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHH
Confidence 368999999999999999998887 33322 123555655432 22345566666776654322111112223333444
Q ss_pred HhcCCCcEEEEEeCCC
Q 042541 265 KQMRIEAILLVLDDVW 280 (695)
Q Consensus 265 ~~l~~~~~LlVlDdv~ 280 (695)
+...+. -++|+|..-
T Consensus 171 ~~~~~~-DvVIIDTAG 185 (437)
T PRK00771 171 EKFKKA-DVIIVDTAG 185 (437)
T ss_pred HHhhcC-CEEEEECCC
Confidence 333333 567777763
No 252
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=96.46 E-value=0.0046 Score=57.97 Aligned_cols=76 Identities=20% Similarity=0.440 Sum_probs=42.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCCCCCHHHHHHHHHHhcCCCCCCCCChHHHHHHHHHHHH
Q 042541 186 GRQFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSKNPNVKAIVQKVLHHKGYPVPEFQTDEAAINDLERFFK 265 (695)
Q Consensus 186 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~ 265 (695)
...-+.|+|..|+|||.||..+.+. -+...+. +.|+++ .+++..+-..-. . .... +.+ +
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~~~-~~~~g~~--v~f~~~------~~L~~~l~~~~~----~-~~~~---~~~----~ 104 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIANE-AIRKGYS--VLFITA------SDLLDELKQSRS----D-GSYE---ELL----K 104 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHHHH-HHHTT----EEEEEH------HHHHHHHHCCHC----C-TTHC---HHH----H
T ss_pred cCeEEEEEhhHhHHHHHHHHHHHHH-hccCCcc--eeEeec------Cceecccccccc----c-cchh---hhc----C
Confidence 3467999999999999999999873 2223333 667754 345555433211 1 1111 112 2
Q ss_pred hcCCCcEEEEEeCCCCCC
Q 042541 266 QMRIEAILLVLDDVWPGS 283 (695)
Q Consensus 266 ~l~~~~~LlVlDdv~~~~ 283 (695)
.+. +-=||||||+....
T Consensus 105 ~l~-~~dlLilDDlG~~~ 121 (178)
T PF01695_consen 105 RLK-RVDLLILDDLGYEP 121 (178)
T ss_dssp HHH-TSSCEEEETCTSS-
T ss_pred ccc-cccEecccccceee
Confidence 222 34578899986543
No 253
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.44 E-value=0.0025 Score=56.72 Aligned_cols=35 Identities=31% Similarity=0.479 Sum_probs=26.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcccccccc-CCCcEEEE
Q 042541 188 QFIVVSAPGGYGKTTLVQRLCKDDQVQGK-FKDDIFYV 224 (695)
Q Consensus 188 ~vv~I~G~gGiGKTtLa~~~~~~~~~~~~-f~~~~~wv 224 (695)
--|+|.|++|+||||+++.+.+ .++.. |..+-+|.
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e--~L~~~g~kvgGf~t 41 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAE--KLREKGYKVGGFIT 41 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHH--HHHhcCceeeeEEe
Confidence 4589999999999999999998 44443 66544454
No 254
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.43 E-value=0.013 Score=55.11 Aligned_cols=36 Identities=25% Similarity=0.512 Sum_probs=28.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEE
Q 042541 186 GRQFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYV 224 (695)
Q Consensus 186 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv 224 (695)
...+|.|+|+.|+||||+|+.++. +....+.. +.++
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~--~l~~~~~~-~~~~ 41 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYE--RLKLKYSN-VIYL 41 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHH--HHHHcCCc-EEEE
Confidence 356899999999999999999988 55555555 4444
No 255
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=96.42 E-value=0.0013 Score=70.98 Aligned_cols=108 Identities=17% Similarity=0.194 Sum_probs=82.9
Q ss_pred CCCCCcEEEEcccCCCCcccCcccccccCCCCcEEEeccCCCCCcc-cccccccccEEeeccccCCcccccchhhhcccC
Q 042541 572 KMDELKVLIVTNYGFSPAELNNFRVLSALSKLKKIRLEHVSLPNSL-ATVRMNHLQKVSLVMCNVGQVFRNSTFRISDAF 650 (695)
Q Consensus 572 ~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~lp-~i~~l~~L~~L~l~~~~i~~~~~~~~~~l~~~l 650 (695)
.+..+..+.++.|.+.. ....++.+.+|.+|++.+|.|..+. .+..+.+|++|++++|.|+.+.+-. .+
T Consensus 70 ~l~~l~~l~l~~n~i~~----~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~l~------~l 139 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAK----ILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEGLS------TL 139 (414)
T ss_pred HhHhHHhhccchhhhhh----hhcccccccceeeeeccccchhhcccchhhhhcchheeccccccccccchh------hc
Confidence 34555566666655422 1222678899999999999999888 4889999999999999999876543 57
Q ss_pred CCccEEecccccccccCchhhcCCCCCceeecccccCCCCCC
Q 042541 651 PNLLEMDIDYCNDLIELPDGLCDIVSMEKLRITNCHRLSALP 692 (695)
Q Consensus 651 ~~L~~L~l~~c~~l~~lP~~i~~L~~L~~L~l~~~~~l~~lP 692 (695)
+.|+.|++++| .+..++ ++..+.+|+.+++++|. +..++
T Consensus 140 ~~L~~L~l~~N-~i~~~~-~~~~l~~L~~l~l~~n~-i~~ie 178 (414)
T KOG0531|consen 140 TLLKELNLSGN-LISDIS-GLESLKSLKLLDLSYNR-IVDIE 178 (414)
T ss_pred cchhhheeccC-cchhcc-CCccchhhhcccCCcch-hhhhh
Confidence 88999999995 567665 47789999999999976 54443
No 256
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=96.41 E-value=0.058 Score=62.45 Aligned_cols=181 Identities=14% Similarity=0.182 Sum_probs=84.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCCCCCHHHHHHHHHHhcCCCCC---CCCChHHHHHHHHH
Q 042541 186 GRQFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSKNPNVKAIVQKVLHHKGYPVP---EFQTDEAAINDLER 262 (695)
Q Consensus 186 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~---~~~~~~~~~~~l~~ 262 (695)
+..++.|+|+.|.|||||.+.+.-.. +..+-. .+|.+..... ...+.++...++.... ...........+..
T Consensus 321 ~~~~liItGpNg~GKSTlLK~i~~~~-l~aq~G---~~Vpa~~~~~-~~~~d~i~~~i~~~~si~~~LStfS~~m~~~~~ 395 (771)
T TIGR01069 321 EKRVLAITGPNTGGKTVTLKTLGLLA-LMFQSG---IPIPANEHSE-IPYFEEIFADIGDEQSIEQNLSTFSGHMKNISA 395 (771)
T ss_pred CceEEEEECCCCCCchHHHHHHHHHH-HHHHhC---CCccCCcccc-ccchhheeeecChHhHHhhhhhHHHHHHHHHHH
Confidence 35799999999999999999886521 100000 0222111100 0011111111111000 00111223334455
Q ss_pred HHHhcCCCcEEEEEeCCCCCChH-----H----HhhhccCCCCCEEEEEcCCCCC------CCCC-eEecCCCChHHHHH
Q 042541 263 FFKQMRIEAILLVLDDVWPGSES-----L----LQKLGFQLPDYKILVTSRSEFP------QFGS-VHYLKPLTYEAART 326 (695)
Q Consensus 263 ~~~~l~~~~~LlVlDdv~~~~~~-----~----~~~l~~~~~gs~iivTtR~~~~------~~~~-~~~l~~L~~~ea~~ 326 (695)
++..+ ..+-|+++|..-...+. + +..+. ..|+.+|+||..... ..+. ...+ .++.+ ...
T Consensus 396 il~~~-~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~--~~g~~viitTH~~eL~~~~~~~~~v~~~~~-~~d~~-~l~ 470 (771)
T TIGR01069 396 ILSKT-TENSLVLFDELGAGTDPDEGSALAISILEYLL--KQNAQVLITTHYKELKALMYNNEGVENASV-LFDEE-TLS 470 (771)
T ss_pred HHHhc-CCCcEEEecCCCCCCCHHHHHHHHHHHHHHHH--hcCCEEEEECChHHHHHHhcCCCCeEEeEE-EEcCC-CCc
Confidence 55444 57899999998654421 1 22222 257899999987511 0010 0111 01110 000
Q ss_pred HHHHhccCCCCCCCCCchHHHHHHHHhcCCchhHHHHHHHhhCCCCHHHHHHHHHHh
Q 042541 327 LFLHSANLQDGNSYIPDENIVSKILRACKGCPLALKVVGGSLCGKHEVFWQRMVKEC 383 (695)
Q Consensus 327 Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~~~~L~~~~~~~w~~~l~~~ 383 (695)
|..+... ..+....|-+|++++ |+|-.|..-|..+...........+.++
T Consensus 471 -p~Ykl~~-----G~~g~S~a~~iA~~~-Glp~~ii~~A~~~~~~~~~~~~~li~~L 520 (771)
T TIGR01069 471 -PTYKLLK-----GIPGESYAFEIAQRY-GIPHFIIEQAKTFYGEFKEEINVLIEKL 520 (771)
T ss_pred -eEEEECC-----CCCCCcHHHHHHHHh-CcCHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 1111110 111244688888888 7888888888776554333444444443
No 257
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=96.40 E-value=0.011 Score=59.79 Aligned_cols=127 Identities=17% Similarity=0.213 Sum_probs=70.6
Q ss_pred CCcchHHHHHHHHHcCCceEEEEEcCCCCcHHHHHHHHhccc-cccccCCCcEEEEE-----eCCCC-----CHHH----
Q 042541 170 GLDVPLKELKMELFKDGRQFIVVSAPGGYGKTTLVQRLCKDD-QVQGKFKDDIFYVT-----VSKNP-----NVKA---- 234 (695)
Q Consensus 170 Gr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~~~~~~-~~~~~f~~~~~wv~-----~~~~~-----~~~~---- 234 (695)
+|..+..--.++|.+++...|.+.|.+|.|||-||.+..-.. -.+..|.. + -|. ++++. ..++
T Consensus 228 prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~K-i-iVtRp~vpvG~dIGfLPG~eEeKm~P 305 (436)
T COG1875 228 PRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRK-I-IVTRPTVPVGEDIGFLPGTEEEKMGP 305 (436)
T ss_pred cccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhce-E-EEecCCcCcccccCcCCCchhhhccc
Confidence 355555555678889999999999999999999986654321 22445554 3 221 22221 1111
Q ss_pred HHHHHHHhc---CCCCCCCCChHHHHHHHHHHH----------HhcCCCc---EEEEEeCCCCCChHHHhh-hccCCCCC
Q 042541 235 IVQKVLHHK---GYPVPEFQTDEAAINDLERFF----------KQMRIEA---ILLVLDDVWPGSESLLQK-LGFQLPDY 297 (695)
Q Consensus 235 ~~~~i~~~l---~~~~~~~~~~~~~~~~l~~~~----------~~l~~~~---~LlVlDdv~~~~~~~~~~-l~~~~~gs 297 (695)
-++.|...+ ...... .. ..+..++ .+++|+. -++|+|.+.+........ +...++||
T Consensus 306 Wmq~i~DnLE~L~~~~~~---~~---~~l~~~l~~~~iev~alt~IRGRSl~~~FiIIDEaQNLTpheikTiltR~G~Gs 379 (436)
T COG1875 306 WMQAIFDNLEVLFSPNEP---GD---RALEEILSRGRIEVEALTYIRGRSLPDSFIIIDEAQNLTPHELKTILTRAGEGS 379 (436)
T ss_pred hHHHHHhHHHHHhccccc---ch---HHHHHHHhccceeeeeeeeecccccccceEEEehhhccCHHHHHHHHHhccCCC
Confidence 122222221 111111 11 1222221 2235553 599999998887654444 44567899
Q ss_pred EEEEEcC
Q 042541 298 KILVTSR 304 (695)
Q Consensus 298 ~iivTtR 304 (695)
||+.|--
T Consensus 380 KIVl~gd 386 (436)
T COG1875 380 KIVLTGD 386 (436)
T ss_pred EEEEcCC
Confidence 9998764
No 258
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=96.39 E-value=0.025 Score=58.62 Aligned_cols=58 Identities=22% Similarity=0.268 Sum_probs=42.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcccccc---ccCCCcEEEEEeCCCCCHHHHHHHHHHhcCC
Q 042541 187 RQFIVVSAPGGYGKTTLVQRLCKDDQVQ---GKFKDDIFYVTVSKNPNVKAIVQKVLHHKGY 245 (695)
Q Consensus 187 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~---~~f~~~~~wv~~~~~~~~~~~~~~i~~~l~~ 245 (695)
..++-|+|.+|+|||+|+..++-..... ......++|++....|+++.+.+ +++.++.
T Consensus 126 G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~-ia~~~g~ 186 (344)
T PLN03187 126 RCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVP-IAERFGM 186 (344)
T ss_pred CeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHH-HHHHcCC
Confidence 4788899999999999998876432322 22234589999999999888755 4555554
No 259
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.38 E-value=0.009 Score=59.48 Aligned_cols=76 Identities=21% Similarity=0.254 Sum_probs=48.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCCCCCHHHHHHHHHHhcCCCCCCCCChHHHHHHHHHHHH
Q 042541 186 GRQFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSKNPNVKAIVQKVLHHKGYPVPEFQTDEAAINDLERFFK 265 (695)
Q Consensus 186 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~ 265 (695)
...-+.++|.+|+|||.||.++.+ ++. .....+.+++++ +++.++....... .....+.+.+
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~--~l~-~~g~sv~f~~~~------el~~~Lk~~~~~~--------~~~~~l~~~l- 165 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGN--ELL-KAGISVLFITAP------DLLSKLKAAFDEG--------RLEEKLLREL- 165 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHH--HHH-HcCCeEEEEEHH------HHHHHHHHHHhcC--------chHHHHHHHh-
Confidence 556789999999999999999999 444 333346676554 4666666655421 1112233322
Q ss_pred hcCCCcEEEEEeCCCCC
Q 042541 266 QMRIEAILLVLDDVWPG 282 (695)
Q Consensus 266 ~l~~~~~LlVlDdv~~~ 282 (695)
.+-=||||||+...
T Consensus 166 ---~~~dlLIiDDlG~~ 179 (254)
T COG1484 166 ---KKVDLLIIDDIGYE 179 (254)
T ss_pred ---hcCCEEEEecccCc
Confidence 23459999998543
No 260
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=96.37 E-value=0.013 Score=57.19 Aligned_cols=42 Identities=21% Similarity=0.377 Sum_probs=31.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCCCCC
Q 042541 187 RQFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSKNPN 231 (695)
Q Consensus 187 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~~~~ 231 (695)
..++.|+|.+|+||||+|.+++.. .... ...++|++....+.
T Consensus 19 g~i~~i~G~~GsGKT~l~~~~a~~--~~~~-g~~v~yi~~e~~~~ 60 (218)
T cd01394 19 GTVTQVYGPPGTGKTNIAIQLAVE--TAGQ-GKKVAYIDTEGLSS 60 (218)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH--HHhc-CCeEEEEECCCCCH
Confidence 588999999999999999998763 2222 23477988765553
No 261
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.33 E-value=0.0098 Score=55.69 Aligned_cols=53 Identities=19% Similarity=0.255 Sum_probs=32.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCCCC-CHHHHHHHHHHhcC
Q 042541 189 FIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSKNP-NVKAIVQKVLHHKG 244 (695)
Q Consensus 189 vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~~~-~~~~~~~~i~~~l~ 244 (695)
++.++|++|+||||++..++. ..... ...++.++..... ...+.+....+..+
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~--~~~~~-g~~v~~i~~D~~~~~~~~~l~~~~~~~~ 55 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLAL--YLKKK-GKKVLLVAADTYRPAAIEQLRVLGEQVG 55 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHH--HHHHC-CCcEEEEEcCCCChHHHHHHHHhcccCC
Confidence 688999999999999998886 33332 2235556554322 23333444444444
No 262
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.32 E-value=0.017 Score=56.82 Aligned_cols=76 Identities=21% Similarity=0.338 Sum_probs=44.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCCCCCHHHHHHHHHHhcCCCCCCCCChHHHHHHHHHHHHh
Q 042541 187 RQFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSKNPNVKAIVQKVLHHKGYPVPEFQTDEAAINDLERFFKQ 266 (695)
Q Consensus 187 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~~ 266 (695)
...+.++|.+|+|||+||.++++. +...-. .++++++ .+++..+-...... . .. ...+++.
T Consensus 99 ~~~~~l~G~~GtGKThLa~aia~~--l~~~g~-~v~~it~------~~l~~~l~~~~~~~--~-~~-------~~~~l~~ 159 (244)
T PRK07952 99 IASFIFSGKPGTGKNHLAAAICNE--LLLRGK-SVLIITV------ADIMSAMKDTFSNS--E-TS-------EEQLLND 159 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHH--HHhcCC-eEEEEEH------HHHHHHHHHHHhhc--c-cc-------HHHHHHH
Confidence 357899999999999999999984 333222 2556643 44555554443210 0 01 1122233
Q ss_pred cCCCcEEEEEeCCCCC
Q 042541 267 MRIEAILLVLDDVWPG 282 (695)
Q Consensus 267 l~~~~~LlVlDdv~~~ 282 (695)
+. +.=+||+||+...
T Consensus 160 l~-~~dlLvIDDig~~ 174 (244)
T PRK07952 160 LS-NVDLLVIDEIGVQ 174 (244)
T ss_pred hc-cCCEEEEeCCCCC
Confidence 44 3458888998554
No 263
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.29 E-value=0.078 Score=57.27 Aligned_cols=123 Identities=12% Similarity=0.234 Sum_probs=73.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCCCCCHHHHHHHHHHhcCCCCCCCCChHHHHHHHHHHH-H
Q 042541 187 RQFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSKNPNVKAIVQKVLHHKGYPVPEFQTDEAAINDLERFF-K 265 (695)
Q Consensus 187 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~-~ 265 (695)
+.=|.++|++|+|||-||++|+| ...-+ |++|... +++.... | +....++.++ +
T Consensus 545 PsGvLL~GPPGCGKTLlAKAVAN--Eag~N------FisVKGP----ELlNkYV---G----------ESErAVR~vFqR 599 (802)
T KOG0733|consen 545 PSGVLLCGPPGCGKTLLAKAVAN--EAGAN------FISVKGP----ELLNKYV---G----------ESERAVRQVFQR 599 (802)
T ss_pred CCceEEeCCCCccHHHHHHHHhh--hccCc------eEeecCH----HHHHHHh---h----------hHHHHHHHHHHH
Confidence 45688999999999999999999 44444 4444432 2222221 1 1123344455 4
Q ss_pred hcCCCcEEEEEeCCCCCC-----------hHHHhhhcc---CC---CCCEEEEEcCCCC---------CCCCCeEecCCC
Q 042541 266 QMRIEAILLVLDDVWPGS-----------ESLLQKLGF---QL---PDYKILVTSRSEF---------PQFGSVHYLKPL 319 (695)
Q Consensus 266 ~l~~~~~LlVlDdv~~~~-----------~~~~~~l~~---~~---~gs~iivTtR~~~---------~~~~~~~~l~~L 319 (695)
.-..-+|+|.||.++... ..+...+.. +. .|.-||-.|-... ......+.++.-
T Consensus 600 AR~saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lP 679 (802)
T KOG0733|consen 600 ARASAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLP 679 (802)
T ss_pred hhcCCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCC
Confidence 446889999999985432 112333322 11 2445555444331 122336777888
Q ss_pred ChHHHHHHHHHhccC
Q 042541 320 TYEAARTLFLHSANL 334 (695)
Q Consensus 320 ~~~ea~~Lf~~~~~~ 334 (695)
+.+|-.++++.....
T Consensus 680 n~~eR~~ILK~~tkn 694 (802)
T KOG0733|consen 680 NAEERVAILKTITKN 694 (802)
T ss_pred CHHHHHHHHHHHhcc
Confidence 888889999887753
No 264
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=96.28 E-value=0.02 Score=59.41 Aligned_cols=89 Identities=18% Similarity=0.233 Sum_probs=50.7
Q ss_pred ceEEEEEcCCCCcHH-HHHHHHhccccccccCCCcEEEEEeCCCC-CHHHHHHHHHHhcCCCCCCCCChHHHHHHHHHHH
Q 042541 187 RQFIVVSAPGGYGKT-TLVQRLCKDDQVQGKFKDDIFYVTVSKNP-NVKAIVQKVLHHKGYPVPEFQTDEAAINDLERFF 264 (695)
Q Consensus 187 ~~vv~I~G~gGiGKT-tLa~~~~~~~~~~~~f~~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~ 264 (695)
.++|.++|+.|+||| |||+..+......++.. |..++..... ...+-++...+-++.+.....+..+ +...+
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~k--VaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~e----l~~ai 276 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKK--VAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKE----LAEAI 276 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcc--eEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHH----HHHHH
Confidence 799999999999998 56766665321233333 6677665443 4455556666666665433333333 33333
Q ss_pred HhcCCCcEEEEEeCCCCC
Q 042541 265 KQMRIEAILLVLDDVWPG 282 (695)
Q Consensus 265 ~~l~~~~~LlVlDdv~~~ 282 (695)
..+++. =++.+|-+...
T Consensus 277 ~~l~~~-d~ILVDTaGrs 293 (407)
T COG1419 277 EALRDC-DVILVDTAGRS 293 (407)
T ss_pred HHhhcC-CEEEEeCCCCC
Confidence 344444 45556666433
No 265
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=96.28 E-value=0.0039 Score=67.55 Aligned_cols=43 Identities=21% Similarity=0.358 Sum_probs=38.2
Q ss_pred CCCCCcchHHHHHHHHH------cCCceEEEEEcCCCCcHHHHHHHHhc
Q 042541 167 ISPGLDVPLKELKMELF------KDGRQFIVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 167 ~~vGr~~~~~~l~~~L~------~~~~~vv~I~G~gGiGKTtLa~~~~~ 209 (695)
.++|.++.+++|++.|. ....+++.++|++|+||||||+.+.+
T Consensus 77 d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~ 125 (644)
T PRK15455 77 EFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKS 125 (644)
T ss_pred cccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHH
Confidence 46999999999999993 44568999999999999999999986
No 266
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=96.26 E-value=0.035 Score=50.52 Aligned_cols=117 Identities=21% Similarity=0.197 Sum_probs=61.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCC---CCCHHHHHHHHH--H--hcCCCCC-CCCChHHHHHH
Q 042541 188 QFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSK---NPNVKAIVQKVL--H--HKGYPVP-EFQTDEAAIND 259 (695)
Q Consensus 188 ~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~---~~~~~~~~~~i~--~--~l~~~~~-~~~~~~~~~~~ 259 (695)
.+|-|++..|.||||+|...+- +...+ ..++.++.+-. ......++..+- . +.+.... ...+.......
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~--ra~~~-g~~v~~vQFlKg~~~~gE~~~l~~l~~v~~~~~g~~~~~~~~~~~~~~~~ 79 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLAL--RALGH-GYRVGVVQFLKGGWKYGELKALERLPNIEIHRMGRGFFWTTENDEEDIAA 79 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHH--HHHHC-CCeEEEEEEeCCCCccCHHHHHHhCCCcEEEECCCCCccCCCChHHHHHH
Confidence 5788999999999999987765 33332 22355655533 234444444431 0 0111100 00111222222
Q ss_pred HHHHH----Hhc-CCCcEEEEEeCCCCC-------ChHHHhhhccCCCCCEEEEEcCCCC
Q 042541 260 LERFF----KQM-RIEAILLVLDDVWPG-------SESLLQKLGFQLPDYKILVTSRSEF 307 (695)
Q Consensus 260 l~~~~----~~l-~~~~~LlVlDdv~~~-------~~~~~~~l~~~~~gs~iivTtR~~~ 307 (695)
..+.+ +.+ .+.-=|||||++-.. .+.+.+.+....++..||+|.|+..
T Consensus 80 a~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p 139 (159)
T cd00561 80 AAEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAP 139 (159)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCC
Confidence 22222 223 355669999997332 1234555555555789999999863
No 267
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.23 E-value=0.066 Score=55.80 Aligned_cols=24 Identities=33% Similarity=0.444 Sum_probs=21.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhc
Q 042541 186 GRQFIVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 186 ~~~vv~I~G~gGiGKTtLa~~~~~ 209 (695)
+.++|+|+|++|+||||++..++.
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~ 263 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAW 263 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHH
Confidence 357999999999999999998876
No 268
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=96.22 E-value=0.018 Score=58.92 Aligned_cols=84 Identities=19% Similarity=0.226 Sum_probs=51.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCCCCCHHHHHHHHHHhcCCCCC-----CCCChHHHHHHHH
Q 042541 187 RQFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSKNPNVKAIVQKVLHHKGYPVP-----EFQTDEAAINDLE 261 (695)
Q Consensus 187 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~ 261 (695)
.+++-|+|++|+||||||.++... .... ...++|++..+.++.. .+++++.... .....++....+.
T Consensus 55 G~iteI~G~~GsGKTtLaL~~~~~--~~~~-g~~v~yId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~~~~ 126 (321)
T TIGR02012 55 GRIIEIYGPESSGKTTLALHAIAE--AQKA-GGTAAFIDAEHALDPV-----YARKLGVDIDNLLVSQPDTGEQALEIAE 126 (321)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH--HHHc-CCcEEEEcccchhHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHH
Confidence 579999999999999999887763 3222 3347899887766653 3444443211 0112333333333
Q ss_pred HHHHhcCCCcEEEEEeCCC
Q 042541 262 RFFKQMRIEAILLVLDDVW 280 (695)
Q Consensus 262 ~~~~~l~~~~~LlVlDdv~ 280 (695)
.+++ .+..-++|+|.+-
T Consensus 127 ~li~--~~~~~lIVIDSv~ 143 (321)
T TIGR02012 127 TLVR--SGAVDIIVVDSVA 143 (321)
T ss_pred HHhh--ccCCcEEEEcchh
Confidence 3222 3567799999974
No 269
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=96.17 E-value=0.013 Score=54.81 Aligned_cols=22 Identities=41% Similarity=0.679 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 042541 189 FIVVSAPGGYGKTTLVQRLCKD 210 (695)
Q Consensus 189 vv~I~G~gGiGKTtLa~~~~~~ 210 (695)
.|.|.|++|+||||+|+.+.+.
T Consensus 2 riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999884
No 270
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=96.16 E-value=0.038 Score=55.26 Aligned_cols=89 Identities=20% Similarity=0.188 Sum_probs=54.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCCCCCHHHHHHHHHH---hcCCCCCCCCChHHHHHHHHHH
Q 042541 187 RQFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSKNPNVKAIVQKVLH---HKGYPVPEFQTDEAAINDLERF 263 (695)
Q Consensus 187 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~~~~~~~~~~~i~~---~l~~~~~~~~~~~~~~~~l~~~ 263 (695)
.+++=|+|+.|+||||+|.+++-. .+..-.. ++|++.-+.++++.+..-... .+....+ .+.++....+...
T Consensus 60 g~ItEiyG~~gsGKT~lal~~~~~--aq~~g~~-a~fIDtE~~l~p~r~~~l~~~~~d~l~v~~~--~~~e~q~~i~~~~ 134 (279)
T COG0468 60 GRITEIYGPESSGKTTLALQLVAN--AQKPGGK-AAFIDTEHALDPERAKQLGVDLLDNLLVSQP--DTGEQQLEIAEKL 134 (279)
T ss_pred ceEEEEecCCCcchhhHHHHHHHH--hhcCCCe-EEEEeCCCCCCHHHHHHHHHhhhcceeEecC--CCHHHHHHHHHHH
Confidence 478889999999999999887753 3333223 789999999988766443333 2222111 1233333333333
Q ss_pred HHhcCCCcEEEEEeCCC
Q 042541 264 FKQMRIEAILLVLDDVW 280 (695)
Q Consensus 264 ~~~l~~~~~LlVlDdv~ 280 (695)
......+--|+|+|.+-
T Consensus 135 ~~~~~~~i~LvVVDSva 151 (279)
T COG0468 135 ARSGAEKIDLLVVDSVA 151 (279)
T ss_pred HHhccCCCCEEEEecCc
Confidence 33333356799999984
No 271
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.15 E-value=0.028 Score=57.11 Aligned_cols=86 Identities=20% Similarity=0.307 Sum_probs=48.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcccccc-ccCCCcEEEEEeCCCC-CHHHHHHHHHHhcCCCCCCCCChHHHHHHHHHHH
Q 042541 187 RQFIVVSAPGGYGKTTLVQRLCKDDQVQ-GKFKDDIFYVTVSKNP-NVKAIVQKVLHHKGYPVPEFQTDEAAINDLERFF 264 (695)
Q Consensus 187 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~-~~f~~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~ 264 (695)
.++++|+|++|+||||++..++.....+ +.+ .+..++..... ...+.+....+.++.+.....+. ..+...+
T Consensus 194 ~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~--~V~li~~D~~r~~a~eql~~~~~~~~~p~~~~~~~----~~l~~~l 267 (282)
T TIGR03499 194 GGVIALVGPTGVGKTTTLAKLAARFVLEHGNK--KVALITTDTYRIGAVEQLKTYAKILGVPVKVARDP----KELRKAL 267 (282)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHHcCCC--eEEEEECCccchhHHHHHHHHHHHhCCceeccCCH----HHHHHHH
Confidence 5799999999999999998887632222 223 36677665422 23334444455555443222222 2344555
Q ss_pred HhcCCCcEEEEEeCC
Q 042541 265 KQMRIEAILLVLDDV 279 (695)
Q Consensus 265 ~~l~~~~~LlVlDdv 279 (695)
+.+.+ .=++++|..
T Consensus 268 ~~~~~-~d~vliDt~ 281 (282)
T TIGR03499 268 DRLRD-KDLILIDTA 281 (282)
T ss_pred HHccC-CCEEEEeCC
Confidence 55543 457777754
No 272
>PRK10867 signal recognition particle protein; Provisional
Probab=96.15 E-value=0.015 Score=62.20 Aligned_cols=24 Identities=33% Similarity=0.396 Sum_probs=20.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhc
Q 042541 186 GRQFIVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 186 ~~~vv~I~G~gGiGKTtLa~~~~~ 209 (695)
.+.+|.++|++|+||||.+..++.
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~ 122 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAK 122 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHH
Confidence 468999999999999998877765
No 273
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=96.14 E-value=0.02 Score=58.60 Aligned_cols=84 Identities=19% Similarity=0.230 Sum_probs=51.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCCCCCHHHHHHHHHHhcCCCCC-----CCCChHHHHHHHH
Q 042541 187 RQFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSKNPNVKAIVQKVLHHKGYPVP-----EFQTDEAAINDLE 261 (695)
Q Consensus 187 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~ 261 (695)
.+++-|+|++|+||||||.+++.. .... ...++|++..+.+++. .++.++.... .....++....+.
T Consensus 55 G~iteI~Gp~GsGKTtLal~~~~~--~~~~-g~~~vyId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~i~~ 126 (325)
T cd00983 55 GRIIEIYGPESSGKTTLALHAIAE--AQKL-GGTVAFIDAEHALDPV-----YAKKLGVDLDNLLISQPDTGEQALEIAD 126 (325)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH--HHHc-CCCEEEECccccHHHH-----HHHHcCCCHHHheecCCCCHHHHHHHHH
Confidence 578999999999999999987752 2222 3347899988776653 3334433211 0112333333333
Q ss_pred HHHHhcCCCcEEEEEeCCC
Q 042541 262 RFFKQMRIEAILLVLDDVW 280 (695)
Q Consensus 262 ~~~~~l~~~~~LlVlDdv~ 280 (695)
.+++ .+..-++|+|.+-
T Consensus 127 ~li~--s~~~~lIVIDSva 143 (325)
T cd00983 127 SLVR--SGAVDLIVVDSVA 143 (325)
T ss_pred HHHh--ccCCCEEEEcchH
Confidence 3332 3567799999973
No 274
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=96.13 E-value=0.028 Score=56.12 Aligned_cols=57 Identities=18% Similarity=0.312 Sum_probs=40.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcccccc---ccCCCcEEEEEeCCCCCHHHHHHHHHHhcC
Q 042541 187 RQFIVVSAPGGYGKTTLVQRLCKDDQVQ---GKFKDDIFYVTVSKNPNVKAIVQKVLHHKG 244 (695)
Q Consensus 187 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~---~~f~~~~~wv~~~~~~~~~~~~~~i~~~l~ 244 (695)
..+.=|+|.+|+|||+|+..++-...+. ...+..++|++....++...+. +|++..+
T Consensus 38 g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~-~i~~~~~ 97 (256)
T PF08423_consen 38 GSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQ-QIAERFG 97 (256)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHH-HHHHHTT
T ss_pred CcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHH-HHhhccc
Confidence 4688899999999999998776433332 2335568999999999887775 4555543
No 275
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.13 E-value=0.02 Score=59.86 Aligned_cols=89 Identities=17% Similarity=0.242 Sum_probs=53.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhccccccccCC-CcEEEEEeCCC-CCHHHHHHHHHHhcCCCCCCCCChHHHHHHHHHHH
Q 042541 187 RQFIVVSAPGGYGKTTLVQRLCKDDQVQGKFK-DDIFYVTVSKN-PNVKAIVQKVLHHKGYPVPEFQTDEAAINDLERFF 264 (695)
Q Consensus 187 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~-~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~ 264 (695)
..++.++|+.|+||||++..+.. +....+. ..+..++.... ....+-+....+.++.+........+ +...+
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~--~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~----l~~~l 210 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAA--RCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGD----LQLAL 210 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH--HHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCccc----HHHHH
Confidence 47899999999999999999987 3322332 23656664432 24555666667777655432222222 23333
Q ss_pred HhcCCCcEEEEEeCCCCC
Q 042541 265 KQMRIEAILLVLDDVWPG 282 (695)
Q Consensus 265 ~~l~~~~~LlVlDdv~~~ 282 (695)
..+.++ -++++|.....
T Consensus 211 ~~l~~~-DlVLIDTaG~~ 227 (374)
T PRK14722 211 AELRNK-HMVLIDTIGMS 227 (374)
T ss_pred HHhcCC-CEEEEcCCCCC
Confidence 444554 55669998543
No 276
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.12 E-value=0.028 Score=58.12 Aligned_cols=38 Identities=21% Similarity=0.322 Sum_probs=27.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeC
Q 042541 187 RQFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVS 227 (695)
Q Consensus 187 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~ 227 (695)
..-+.++|..|+|||.||..+++ .+...- ..|+++++.
T Consensus 183 ~~~Lll~G~~GtGKThLa~aIa~--~l~~~g-~~V~y~t~~ 220 (329)
T PRK06835 183 NENLLFYGNTGTGKTFLSNCIAK--ELLDRG-KSVIYRTAD 220 (329)
T ss_pred CCcEEEECCCCCcHHHHHHHHHH--HHHHCC-CeEEEEEHH
Confidence 37799999999999999999998 333222 236676654
No 277
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=96.12 E-value=0.029 Score=55.16 Aligned_cols=25 Identities=32% Similarity=0.501 Sum_probs=22.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhc
Q 042541 185 DGRQFIVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 185 ~~~~vv~I~G~gGiGKTtLa~~~~~ 209 (695)
+...+|+|.|+.|+|||||++.+..
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~ 55 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEA 55 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4578999999999999999999886
No 278
>PRK14974 cell division protein FtsY; Provisional
Probab=96.11 E-value=0.04 Score=56.94 Aligned_cols=92 Identities=14% Similarity=0.111 Sum_probs=49.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhccccccc-cCCCcEEEEEeCCC-CCHHHHHHHHHHhcCCCCCCCCChHHHHHHHHHH
Q 042541 186 GRQFIVVSAPGGYGKTTLVQRLCKDDQVQG-KFKDDIFYVTVSKN-PNVKAIVQKVLHHKGYPVPEFQTDEAAINDLERF 263 (695)
Q Consensus 186 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~-~f~~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~ 263 (695)
++.+|.++|+.|+||||++..++. .... .+. +..+..... ....+-+......++.+........+....+...
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~--~l~~~g~~--V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~a 214 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAY--YLKKNGFS--VVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDA 214 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHH--HHHHcCCe--EEEecCCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHH
Confidence 468999999999999998888776 3332 232 445443211 1233445666677765432211111111112222
Q ss_pred HHh--cCCCcEEEEEeCCCCC
Q 042541 264 FKQ--MRIEAILLVLDDVWPG 282 (695)
Q Consensus 264 ~~~--l~~~~~LlVlDdv~~~ 282 (695)
++. ..+.. ++++|.+...
T Consensus 215 i~~~~~~~~D-vVLIDTaGr~ 234 (336)
T PRK14974 215 IEHAKARGID-VVLIDTAGRM 234 (336)
T ss_pred HHHHHhCCCC-EEEEECCCcc
Confidence 211 12333 9999998654
No 279
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=96.11 E-value=0.019 Score=65.97 Aligned_cols=106 Identities=18% Similarity=0.223 Sum_probs=61.1
Q ss_pred CCCCCCcchHHHHHHHHHc-------C--CceEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCCCCCHHHHH
Q 042541 166 VISPGLDVPLKELKMELFK-------D--GRQFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSKNPNVKAIV 236 (695)
Q Consensus 166 ~~~vGr~~~~~~l~~~L~~-------~--~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~~~~~~~~~ 236 (695)
..++|-++.++.|...+.. . ....+.++|+.|+|||++|+.++. ... ...+.+++++......
T Consensus 458 ~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~--~l~----~~~i~id~se~~~~~~-- 529 (758)
T PRK11034 458 MLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSK--ALG----IELLRFDMSEYMERHT-- 529 (758)
T ss_pred ceEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHH--HhC----CCcEEeechhhccccc--
Confidence 4579999999988888761 1 135788999999999999999987 332 2244666654332111
Q ss_pred HHHHHhcCCCCCCCCChHHHHHHHHHHHHhcCCCcEEEEEeCCCCCChH
Q 042541 237 QKVLHHKGYPVPEFQTDEAAINDLERFFKQMRIEAILLVLDDVWPGSES 285 (695)
Q Consensus 237 ~~i~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~~~LlVlDdv~~~~~~ 285 (695)
+.+-+|.+ +..... .....+.+.+. +....+|+||++......
T Consensus 530 --~~~LiG~~-~gyvg~-~~~g~L~~~v~--~~p~sVlllDEieka~~~ 572 (758)
T PRK11034 530 --VSRLIGAP-PGYVGF-DQGGLLTDAVI--KHPHAVLLLDEIEKAHPD 572 (758)
T ss_pred --HHHHcCCC-CCcccc-cccchHHHHHH--hCCCcEEEeccHhhhhHH
Confidence 11112322 111110 00111222221 234579999999877755
No 280
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.11 E-value=0.022 Score=52.47 Aligned_cols=40 Identities=30% Similarity=0.498 Sum_probs=29.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCCCCC
Q 042541 189 FIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSKNPN 231 (695)
Q Consensus 189 vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~~~~ 231 (695)
++.|+|++|+||||++..+... ... ....++|++......
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~--~~~-~~~~v~~~~~e~~~~ 40 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALN--IAT-KGGKVVYVDIEEEIE 40 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHH--HHh-cCCEEEEEECCcchH
Confidence 4689999999999999999873 322 334477888876543
No 281
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.11 E-value=0.047 Score=51.00 Aligned_cols=23 Identities=35% Similarity=0.440 Sum_probs=20.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhc
Q 042541 187 RQFIVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 187 ~~vv~I~G~gGiGKTtLa~~~~~ 209 (695)
..+++|+|+.|+|||||.+.+..
T Consensus 21 G~~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 21 NVLVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred CCEEEEECCCCCCHHHHHHHHhh
Confidence 47899999999999999998863
No 282
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.08 E-value=0.0086 Score=55.49 Aligned_cols=87 Identities=17% Similarity=0.212 Sum_probs=41.1
Q ss_pred hcCCCCCcEEEEcccCCCCcccCcccccccCCCCcEEEeccCCCCCcc---cccccccccEEeeccccCCcccccchhhh
Q 042541 570 LQKMDELKVLIVTNYGFSPAELNNFRVLSALSKLKKIRLEHVSLPNSL---ATVRMNHLQKVSLVMCNVGQVFRNSTFRI 646 (695)
Q Consensus 570 ~~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~lp---~i~~l~~L~~L~l~~~~i~~~~~~~~~~l 646 (695)
|..++.|.+|.+.+|.+..-. +.+ -..+++|..|.|.+|+|..+. .+..++.|++|.+-+|+++....--. .+
T Consensus 60 lp~l~rL~tLll~nNrIt~I~-p~L--~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~-yv 135 (233)
T KOG1644|consen 60 LPHLPRLHTLLLNNNRITRID-PDL--DTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRL-YV 135 (233)
T ss_pred CCCccccceEEecCCcceeec-cch--hhhccccceEEecCcchhhhhhcchhccCCccceeeecCCchhcccCcee-EE
Confidence 344556666666665442110 111 123445666666666655443 44455666666666665544321100 00
Q ss_pred cccCCCccEEeccc
Q 042541 647 SDAFPNLLEMDIDY 660 (695)
Q Consensus 647 ~~~l~~L~~L~l~~ 660 (695)
-..+++|++||.+.
T Consensus 136 l~klp~l~~LDF~k 149 (233)
T KOG1644|consen 136 LYKLPSLRTLDFQK 149 (233)
T ss_pred EEecCcceEeehhh
Confidence 00466666666554
No 283
>PRK06547 hypothetical protein; Provisional
Probab=96.07 E-value=0.0083 Score=55.87 Aligned_cols=33 Identities=27% Similarity=0.374 Sum_probs=27.0
Q ss_pred HHHHHHHcCCceEEEEEcCCCCcHHHHHHHHhc
Q 042541 177 ELKMELFKDGRQFIVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 177 ~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~~~~ 209 (695)
.+...+......+|+|.|++|+||||+|+.+..
T Consensus 5 ~~~~~~~~~~~~~i~i~G~~GsGKTt~a~~l~~ 37 (172)
T PRK06547 5 LIAARLCGGGMITVLIDGRSGSGKTTLAGALAA 37 (172)
T ss_pred HHHHHhhcCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 344445566688999999999999999999986
No 284
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.07 E-value=0.083 Score=56.26 Aligned_cols=24 Identities=29% Similarity=0.368 Sum_probs=21.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhc
Q 042541 186 GRQFIVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 186 ~~~vv~I~G~gGiGKTtLa~~~~~ 209 (695)
.+.+|.++|+.|+||||++..++.
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~ 122 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAY 122 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 368999999999999999988875
No 285
>PTZ00035 Rad51 protein; Provisional
Probab=96.03 E-value=0.063 Score=55.82 Aligned_cols=57 Identities=19% Similarity=0.259 Sum_probs=39.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcccccc---ccCCCcEEEEEeCCCCCHHHHHHHHHHhcC
Q 042541 187 RQFIVVSAPGGYGKTTLVQRLCKDDQVQ---GKFKDDIFYVTVSKNPNVKAIVQKVLHHKG 244 (695)
Q Consensus 187 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~---~~f~~~~~wv~~~~~~~~~~~~~~i~~~l~ 244 (695)
..++.|+|.+|+|||||+..++-..... ..-...++|++....++.+.+ .++.+.++
T Consensus 118 G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~eri-~~ia~~~g 177 (337)
T PTZ00035 118 GSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERI-VQIAERFG 177 (337)
T ss_pred CeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHHH-HHHHHHhC
Confidence 5789999999999999998886532321 112334779999888777764 44455544
No 286
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=96.01 E-value=0.14 Score=56.91 Aligned_cols=63 Identities=14% Similarity=0.227 Sum_probs=45.8
Q ss_pred CCCCCCCcchHHHHHHHHH--cCCceEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCCCC
Q 042541 165 PVISPGLDVPLKELKMELF--KDGRQFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSKNP 230 (695)
Q Consensus 165 ~~~~vGr~~~~~~l~~~L~--~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~~~ 230 (695)
...++|....++++.+.+. .....-|.|+|..|+|||++|+.+++. -. +-+...+.|++....
T Consensus 186 ~~~iig~s~~~~~~~~~i~~~a~~~~pVlI~Ge~GtGK~~~A~~ih~~--s~-r~~~p~v~v~c~~~~ 250 (509)
T PRK05022 186 EGEMIGQSPAMQQLKKEIEVVAASDLNVLILGETGVGKELVARAIHAA--SP-RADKPLVYLNCAALP 250 (509)
T ss_pred CCceeecCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHh--CC-cCCCCeEEEEcccCC
Confidence 4568999999999988887 344567899999999999999999873 11 122224566666543
No 287
>PRK07667 uridine kinase; Provisional
Probab=96.01 E-value=0.0089 Score=57.04 Aligned_cols=35 Identities=29% Similarity=0.292 Sum_probs=28.2
Q ss_pred HHHHHHHHH--cCCceEEEEEcCCCCcHHHHHHHHhc
Q 042541 175 LKELKMELF--KDGRQFIVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 175 ~~~l~~~L~--~~~~~vv~I~G~gGiGKTtLa~~~~~ 209 (695)
.+.|.+.+. .+...+|+|.|.+|+||||+|+.+..
T Consensus 3 ~~~~~~~~~~~~~~~~iIgI~G~~gsGKStla~~L~~ 39 (193)
T PRK07667 3 TNELINIMKKHKENRFILGIDGLSRSGKTTFVANLKE 39 (193)
T ss_pred HHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 455666665 34467999999999999999999987
No 288
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.01 E-value=0.098 Score=53.48 Aligned_cols=43 Identities=26% Similarity=0.275 Sum_probs=30.3
Q ss_pred CCCCCcchHHHHHHHHHc------------CCceEEEEEcCCCCcHHHHHHHHhc
Q 042541 167 ISPGLDVPLKELKMELFK------------DGRQFIVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 167 ~~vGr~~~~~~l~~~L~~------------~~~~vv~I~G~gGiGKTtLa~~~~~ 209 (695)
.+.|..+.++-|.+.+.- ..-+-|.++|++|.|||-||++|+.
T Consensus 213 DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPWkgvLm~GPPGTGKTlLAKAvAT 267 (491)
T KOG0738|consen 213 DIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWKGVLMVGPPGTGKTLLAKAVAT 267 (491)
T ss_pred hhcchHHHHHHHHHHHhhhhhhHHHHhhcccccceeeeeCCCCCcHHHHHHHHHH
Confidence 345555555555554431 1136688999999999999999998
No 289
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=96.01 E-value=0.051 Score=55.02 Aligned_cols=52 Identities=19% Similarity=0.329 Sum_probs=36.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCCCCCHHHHHHHHHHh
Q 042541 187 RQFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSKNPNVKAIVQKVLHH 242 (695)
Q Consensus 187 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~~~~~~~~~~~i~~~ 242 (695)
..++.|.|.+|+||||++.+++.. ........++|+++.. +..++...+...
T Consensus 30 g~~~~i~g~~G~GKT~l~~~~~~~--~~~~~g~~vl~iS~E~--~~~~~~~r~~~~ 81 (271)
T cd01122 30 GELIILTAGTGVGKTTFLREYALD--LITQHGVRVGTISLEE--PVVRTARRLLGQ 81 (271)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHH--HHHhcCceEEEEEccc--CHHHHHHHHHHH
Confidence 468899999999999999988763 3222233478988876 445666666554
No 290
>PRK09354 recA recombinase A; Provisional
Probab=95.98 E-value=0.027 Score=58.15 Aligned_cols=84 Identities=18% Similarity=0.223 Sum_probs=52.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCCCCCHHHHHHHHHHhcCCCCC-----CCCChHHHHHHHH
Q 042541 187 RQFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSKNPNVKAIVQKVLHHKGYPVP-----EFQTDEAAINDLE 261 (695)
Q Consensus 187 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~ 261 (695)
.+++-|+|++|+||||||.+++.. .... ...++|++....++.. .++.++.... .....++....+.
T Consensus 60 G~IteI~G~~GsGKTtLal~~~~~--~~~~-G~~~~yId~E~s~~~~-----~a~~lGvdld~lli~qp~~~Eq~l~i~~ 131 (349)
T PRK09354 60 GRIVEIYGPESSGKTTLALHAIAE--AQKA-GGTAAFIDAEHALDPV-----YAKKLGVDIDNLLVSQPDTGEQALEIAD 131 (349)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH--HHHc-CCcEEEECCccchHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHH
Confidence 578999999999999999887763 2222 3347899998877753 3444443211 0112333333333
Q ss_pred HHHHhcCCCcEEEEEeCCC
Q 042541 262 RFFKQMRIEAILLVLDDVW 280 (695)
Q Consensus 262 ~~~~~l~~~~~LlVlDdv~ 280 (695)
.+++ .+..-++|+|.+-
T Consensus 132 ~li~--s~~~~lIVIDSva 148 (349)
T PRK09354 132 TLVR--SGAVDLIVVDSVA 148 (349)
T ss_pred HHhh--cCCCCEEEEeChh
Confidence 3332 3567799999974
No 291
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=95.98 E-value=0.021 Score=61.09 Aligned_cols=58 Identities=17% Similarity=0.178 Sum_probs=34.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCCCC-CHHHHHHHHHHhcCC
Q 042541 186 GRQFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSKNP-NVKAIVQKVLHHKGY 245 (695)
Q Consensus 186 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~~~-~~~~~~~~i~~~l~~ 245 (695)
.+.++.++|.+|+||||.|..++. .........+..|++.... ...+-+....+..+.
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~--~l~~~~g~kV~lV~~D~~R~~a~~QL~~~a~~~gv 156 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAY--YLKKKQGKKVLLVACDLYRPAAIEQLKVLGQQVGV 156 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHH--HHHHhCCCeEEEEeccccchHHHHHHHHHHHhcCC
Confidence 367999999999999999988876 3221112235556554322 223334444555443
No 292
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=95.96 E-value=0.068 Score=50.22 Aligned_cols=23 Identities=35% Similarity=0.413 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhc
Q 042541 187 RQFIVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 187 ~~vv~I~G~gGiGKTtLa~~~~~ 209 (695)
..+++|.|+.|.|||||++.++.
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G 50 (178)
T cd03247 28 GEKIALLGRSGSGKSTLLQLLTG 50 (178)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 47899999999999999999986
No 293
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=95.95 E-value=0.078 Score=50.67 Aligned_cols=146 Identities=22% Similarity=0.298 Sum_probs=80.9
Q ss_pred CCCCCCCCC-CcchHHHHHHHHHc-------------CCceEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeC
Q 042541 162 PDPPVISPG-LDVPLKELKMELFK-------------DGRQFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVS 227 (695)
Q Consensus 162 ~~~~~~~vG-r~~~~~~l~~~L~~-------------~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~ 227 (695)
|...-.+|| .+..+++|.+.+.- .+++=|.++|++|.|||-||++|+++ .+ +.++.||
T Consensus 142 PDStYeMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahh-------t~-c~firvs 213 (404)
T KOG0728|consen 142 PDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHH-------TD-CTFIRVS 213 (404)
T ss_pred CccHHHHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhh-------cc-eEEEEec
Confidence 333334555 56677777776651 23677899999999999999999983 23 5578887
Q ss_pred CCCCHHHHHHHHHHhcCCCCCCCCChHHHHHHHHHHH-HhcCCCcEEEEEeCCCCCCh----------H--------HHh
Q 042541 228 KNPNVKAIVQKVLHHKGYPVPEFQTDEAAINDLERFF-KQMRIEAILLVLDDVWPGSE----------S--------LLQ 288 (695)
Q Consensus 228 ~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~-~~l~~~~~LlVlDdv~~~~~----------~--------~~~ 288 (695)
.. ++.+..+-. .....++++ -.-..-+.++..|.+++... . ++.
T Consensus 214 gs----elvqk~ige-------------gsrmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlelln 276 (404)
T KOG0728|consen 214 GS----ELVQKYIGE-------------GSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLN 276 (404)
T ss_pred hH----HHHHHHhhh-------------hHHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHH
Confidence 64 222222111 112223333 11134567888888754321 1 222
Q ss_pred hhcc--CCCCCEEEEEc-CCCC-----CCCC---CeEecCCCChHHHHHHHHHhc
Q 042541 289 KLGF--QLPDYKILVTS-RSEF-----PQFG---SVHYLKPLTYEAARTLFLHSA 332 (695)
Q Consensus 289 ~l~~--~~~gs~iivTt-R~~~-----~~~~---~~~~l~~L~~~ea~~Lf~~~~ 332 (695)
.+.. ...+-+||..| |... ...| ..++.++-+.+.-.++++-+.
T Consensus 277 qldgfeatknikvimatnridild~allrpgridrkiefp~p~e~ar~~ilkihs 331 (404)
T KOG0728|consen 277 QLDGFEATKNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHS 331 (404)
T ss_pred hccccccccceEEEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhh
Confidence 2221 22356777755 4331 1223 356666767666666666443
No 294
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=95.94 E-value=0.045 Score=52.23 Aligned_cols=87 Identities=21% Similarity=0.200 Sum_probs=57.8
Q ss_pred CCCCCCcchHHHHHHHHH----cCCceEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCCCCCHHHHHHHHHH
Q 042541 166 VISPGLDVPLKELKMELF----KDGRQFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSKNPNVKAIVQKVLH 241 (695)
Q Consensus 166 ~~~vGr~~~~~~l~~~L~----~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~~~~~~~~~~~i~~ 241 (695)
..++|.+...+.+++--. .-..--|.+||..|.|||+|++++.+ .+...... -|.|+..
T Consensus 60 ~~l~Gvd~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~--e~~~~glr---LVEV~k~------------ 122 (287)
T COG2607 60 ADLVGVDRQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLN--EYADEGLR---LVEVDKE------------ 122 (287)
T ss_pred HHHhCchHHHHHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHH--HHHhcCCe---EEEEcHH------------
Confidence 457999988888876433 33356789999999999999999998 55555443 3444331
Q ss_pred hcCCCCCCCCChHHHHHHHHHHHHhc--CCCcEEEEEeCCCCCC
Q 042541 242 HKGYPVPEFQTDEAAINDLERFFKQM--RIEAILLVLDDVWPGS 283 (695)
Q Consensus 242 ~l~~~~~~~~~~~~~~~~l~~~~~~l--~~~~~LlVlDdv~~~~ 283 (695)
.+..|-.+++.| ...+|+|..||+.-..
T Consensus 123 --------------dl~~Lp~l~~~Lr~~~~kFIlFcDDLSFe~ 152 (287)
T COG2607 123 --------------DLATLPDLVELLRARPEKFILFCDDLSFEE 152 (287)
T ss_pred --------------HHhhHHHHHHHHhcCCceEEEEecCCCCCC
Confidence 122223333222 4789999999985443
No 295
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=95.91 E-value=0.046 Score=56.70 Aligned_cols=57 Identities=18% Similarity=0.240 Sum_probs=40.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcccccccc---CCCcEEEEEeCCCCCHHHHHHHHHHhcC
Q 042541 187 RQFIVVSAPGGYGKTTLVQRLCKDDQVQGK---FKDDIFYVTVSKNPNVKAIVQKVLHHKG 244 (695)
Q Consensus 187 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~---f~~~~~wv~~~~~~~~~~~~~~i~~~l~ 244 (695)
..++-|+|++|+|||+++.+++-....... -...++|++..+.++...+.+ +++.++
T Consensus 102 g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~~-~~~~~g 161 (317)
T PRK04301 102 QSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIEQ-MAEALG 161 (317)
T ss_pred CcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHHH-HHHHcC
Confidence 578999999999999999888753222211 123488999999888777654 344444
No 296
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=95.90 E-value=0.081 Score=58.70 Aligned_cols=143 Identities=15% Similarity=0.230 Sum_probs=80.8
Q ss_pred CCCCCcchHHHHHHHHH------c-------CCceEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCCCCCHH
Q 042541 167 ISPGLDVPLKELKMELF------K-------DGRQFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSKNPNVK 233 (695)
Q Consensus 167 ~~vGr~~~~~~l~~~L~------~-------~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~~~~~~ 233 (695)
.+.|.+...+.+.+.+. . ...+.+.++|++|.|||.||+++++ .....| +.+...
T Consensus 243 diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~--~~~~~f------i~v~~~---- 310 (494)
T COG0464 243 DIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVAL--ESRSRF------ISVKGS---- 310 (494)
T ss_pred hhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHh--hCCCeE------EEeeCH----
Confidence 33555655555554443 1 2356899999999999999999998 333333 222221
Q ss_pred HHHHHHHHhcCCCCCCCCChHHHHHHHHHHH-HhcCCCcEEEEEeCCCCCCh-----------HHHhhhcc----CCC--
Q 042541 234 AIVQKVLHHKGYPVPEFQTDEAAINDLERFF-KQMRIEAILLVLDDVWPGSE-----------SLLQKLGF----QLP-- 295 (695)
Q Consensus 234 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~-~~l~~~~~LlVlDdv~~~~~-----------~~~~~l~~----~~~-- 295 (695)
.++... ..+....+++++ ...+..++.|.+|+++.... .....+.. ...
T Consensus 311 ----~l~sk~---------vGesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~ 377 (494)
T COG0464 311 ----ELLSKW---------VGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAE 377 (494)
T ss_pred ----HHhccc---------cchHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccC
Confidence 111111 112234455555 44468899999999843210 12222221 112
Q ss_pred CCEEEEEcCCCC-------C--CCCCeEecCCCChHHHHHHHHHhccC
Q 042541 296 DYKILVTSRSEF-------P--QFGSVHYLKPLTYEAARTLFLHSANL 334 (695)
Q Consensus 296 gs~iivTtR~~~-------~--~~~~~~~l~~L~~~ea~~Lf~~~~~~ 334 (695)
+..||-||-... . .....+.+++-+.++..+.|..+...
T Consensus 378 ~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~ 425 (494)
T COG0464 378 GVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRD 425 (494)
T ss_pred ceEEEecCCCccccCHhhcccCccceEeecCCCCHHHHHHHHHHHhcc
Confidence 223344444331 1 23347888999999999999988753
No 297
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=95.90 E-value=0.12 Score=59.98 Aligned_cols=183 Identities=14% Similarity=0.136 Sum_probs=85.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCCCCCHHHHHHHHHHhcCCCCCCC---CChHHHHHHHHH
Q 042541 186 GRQFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSKNPNVKAIVQKVLHHKGYPVPEF---QTDEAAINDLER 262 (695)
Q Consensus 186 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~l~~ 262 (695)
+.+++.|+|+.+.||||+.+.+.-.. +-.+..+ +|.+... ....++..|+..++....-. .........+..
T Consensus 326 ~~~~~iITGpN~gGKTt~lktigl~~-~maq~G~---~vpa~~~-~~i~~~~~i~~~ig~~~si~~~lStfS~~m~~~~~ 400 (782)
T PRK00409 326 DKTVLVITGPNTGGKTVTLKTLGLAA-LMAKSGL---PIPANEP-SEIPVFKEIFADIGDEQSIEQSLSTFSGHMTNIVR 400 (782)
T ss_pred CceEEEEECCCCCCcHHHHHHHHHHH-HHHHhCC---CcccCCC-ccccccceEEEecCCccchhhchhHHHHHHHHHHH
Confidence 45789999999999999998875320 1111110 2222210 00111111221222111100 111223344444
Q ss_pred HHHhcCCCcEEEEEeCCCCCChH-----HHhhhcc--CCCCCEEEEEcCCCCC----C--CCC-eEecCCCChHHHHHHH
Q 042541 263 FFKQMRIEAILLVLDDVWPGSES-----LLQKLGF--QLPDYKILVTSRSEFP----Q--FGS-VHYLKPLTYEAARTLF 328 (695)
Q Consensus 263 ~~~~l~~~~~LlVlDdv~~~~~~-----~~~~l~~--~~~gs~iivTtR~~~~----~--~~~-~~~l~~L~~~ea~~Lf 328 (695)
++..+ ..+-|+++|......+. +...+.. ...|+.+|+||..... . .+. ...+. ++. +... +
T Consensus 401 Il~~~-~~~sLvLlDE~~~GtDp~eg~ala~aile~l~~~~~~vIitTH~~el~~~~~~~~~v~~~~~~-~d~-~~l~-~ 476 (782)
T PRK00409 401 ILEKA-DKNSLVLFDELGAGTDPDEGAALAISILEYLRKRGAKIIATTHYKELKALMYNREGVENASVE-FDE-ETLR-P 476 (782)
T ss_pred HHHhC-CcCcEEEecCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECChHHHHHHHhcCCCeEEEEEE-Eec-CcCc-E
Confidence 55444 56789999998654421 1111111 1247899999987511 0 010 11111 111 1100 0
Q ss_pred HHhccCCCCCCCCCchHHHHHHHHhcCCchhHHHHHHHhhCCCCHHHHHHHHHHh
Q 042541 329 LHSANLQDGNSYIPDENIVSKILRACKGCPLALKVVGGSLCGKHEVFWQRMVKEC 383 (695)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~~~~L~~~~~~~w~~~l~~~ 383 (695)
..... . ..+....|-+|++.+ |+|-.+..-|..+-..........+.++
T Consensus 477 ~Ykl~-~----G~~g~S~a~~iA~~~-Glp~~ii~~A~~~~~~~~~~~~~li~~l 525 (782)
T PRK00409 477 TYRLL-I----GIPGKSNAFEIAKRL-GLPENIIEEAKKLIGEDKEKLNELIASL 525 (782)
T ss_pred EEEEe-e----CCCCCcHHHHHHHHh-CcCHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 01110 0 111245688888888 7888888887766544433444444443
No 298
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=95.89 E-value=0.01 Score=55.04 Aligned_cols=100 Identities=13% Similarity=0.156 Sum_probs=73.5
Q ss_pred CCCcEEEEcccCCCCcccCcccccccCCCCcEEEeccCCCCCcc-ccc-ccccccEEeeccccCCcccc--cchhhhccc
Q 042541 574 DELKVLIVTNYGFSPAELNNFRVLSALSKLKKIRLEHVSLPNSL-ATV-RMNHLQKVSLVMCNVGQVFR--NSTFRISDA 649 (695)
Q Consensus 574 ~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~lp-~i~-~l~~L~~L~l~~~~i~~~~~--~~~~~l~~~ 649 (695)
.+...+||++|.+ ..++.+..++.|..|.|++|+|+.+- .++ .+++|..|.|.+|+|..+-. ..- .
T Consensus 42 d~~d~iDLtdNdl-----~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa-----~ 111 (233)
T KOG1644|consen 42 DQFDAIDLTDNDL-----RKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLA-----S 111 (233)
T ss_pred cccceecccccch-----hhcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhc-----c
Confidence 4677888888755 23344678889999999999999776 555 46789999999998766432 112 6
Q ss_pred CCCccEEecccccccccCch----hhcCCCCCceeeccc
Q 042541 650 FPNLLEMDIDYCNDLIELPD----GLCDIVSMEKLRITN 684 (695)
Q Consensus 650 l~~L~~L~l~~c~~l~~lP~----~i~~L~~L~~L~l~~ 684 (695)
+++|++|.+-+|+ ...-+. -+.++++|++||+++
T Consensus 112 ~p~L~~Ltll~Np-v~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 112 CPKLEYLTLLGNP-VEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred CCccceeeecCCc-hhcccCceeEEEEecCcceEeehhh
Confidence 8899999888853 444332 277899999999875
No 299
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=95.86 E-value=0.6 Score=47.57 Aligned_cols=159 Identities=10% Similarity=0.057 Sum_probs=91.0
Q ss_pred HHHHHHHHHcCC-ceEEEEEcCCCCcHHHHHHHHhccccc--------c-ccCCCcEEEEEeCC-CCCHHHHHHHHHHhc
Q 042541 175 LKELKMELFKDG-RQFIVVSAPGGYGKTTLVQRLCKDDQV--------Q-GKFKDDIFYVTVSK-NPNVKAIVQKVLHHK 243 (695)
Q Consensus 175 ~~~l~~~L~~~~-~~vv~I~G~gGiGKTtLa~~~~~~~~~--------~-~~f~~~~~wv~~~~-~~~~~~~~~~i~~~l 243 (695)
++.+...+..+. ..+..++|..|+||+++|..+.+ .+ . +..+..+.+++..+ ....+++ +++.+.+
T Consensus 5 ~~~l~~~i~~~~l~haYLf~G~eg~gk~~~a~~~a~--~l~c~~~~~~~~~~~p~n~~~~d~~g~~i~vd~I-r~l~~~~ 81 (299)
T PRK07132 5 IKFLDNSATQNKISHSFLLKSNYNEDIDEKILYFLN--KFNNLQITNLNEQELPANIILFDIFDKDLSKSEF-LSAINKL 81 (299)
T ss_pred HHHHHHHHHhCCCCeEEEEeCCCCCCHHHHHHHHHH--HHcCcCCCCCCCCCCCcceEEeccCCCcCCHHHH-HHHHHHh
Confidence 345555555554 56677999999999999998876 32 1 11121133432211 1222222 1222222
Q ss_pred CCCCCCCCChHHHHHHHHHHHHhcCCCcEEEEEeCCCCCChH----HHhhhccCCCCCEEEEEcCCCC------CCCCCe
Q 042541 244 GYPVPEFQTDEAAINDLERFFKQMRIEAILLVLDDVWPGSES----LLQKLGFQLPDYKILVTSRSEF------PQFGSV 313 (695)
Q Consensus 244 ~~~~~~~~~~~~~~~~l~~~~~~l~~~~~LlVlDdv~~~~~~----~~~~l~~~~~gs~iivTtR~~~------~~~~~~ 313 (695)
..... -.+++-++|+||+...... ++..+....+++.+|++|.... ..-+..
T Consensus 82 ~~~~~------------------~~~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~SRc~~ 143 (299)
T PRK07132 82 YFSSF------------------VQSQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRCQV 143 (299)
T ss_pred ccCCc------------------ccCCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHhCeEE
Confidence 11100 0257889999998766543 5566666666777777665441 112348
Q ss_pred EecCCCChHHHHHHHHHhccCCCCCCCCCchHHHHHHHHhcCCchhHHHH
Q 042541 314 HYLKPLTYEAARTLFLHSANLQDGNSYIPDENIVSKILRACKGCPLALKV 363 (695)
Q Consensus 314 ~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~ 363 (695)
+++.++++++..+.+.... ..++.+..++...+|.=.|+..
T Consensus 144 ~~f~~l~~~~l~~~l~~~~---------~~~~~a~~~a~~~~~~~~a~~~ 184 (299)
T PRK07132 144 FNVKEPDQQKILAKLLSKN---------KEKEYNWFYAYIFSNFEQAEKY 184 (299)
T ss_pred EECCCCCHHHHHHHHHHcC---------CChhHHHHHHHHcCCHHHHHHH
Confidence 9999999999988776531 1234567777777773345444
No 300
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=95.85 E-value=0.051 Score=56.41 Aligned_cols=58 Identities=17% Similarity=0.264 Sum_probs=41.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcccccc---ccCCCcEEEEEeCCCCCHHHHHHHHHHhcCC
Q 042541 187 RQFIVVSAPGGYGKTTLVQRLCKDDQVQ---GKFKDDIFYVTVSKNPNVKAIVQKVLHHKGY 245 (695)
Q Consensus 187 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~---~~f~~~~~wv~~~~~~~~~~~~~~i~~~l~~ 245 (695)
..++-|+|.+|+|||+|+..++-..... ..-...++|++....++++.+. ++++.++.
T Consensus 123 g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl~-qia~~~~~ 183 (342)
T PLN03186 123 GSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRLI-QIAERFGL 183 (342)
T ss_pred ceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHHH-HHHHHcCC
Confidence 5788899999999999998776432221 1122348899999999887764 55666554
No 301
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=95.82 E-value=0.012 Score=55.96 Aligned_cols=24 Identities=21% Similarity=0.354 Sum_probs=21.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhc
Q 042541 186 GRQFIVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 186 ~~~vv~I~G~gGiGKTtLa~~~~~ 209 (695)
+.++|+|+|++|+||||+|+.+..
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~ 25 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVE 25 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 357899999999999999999886
No 302
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=95.77 E-value=0.03 Score=56.38 Aligned_cols=56 Identities=14% Similarity=0.236 Sum_probs=35.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCCCC-CHHHHHHHHHHhcC
Q 042541 186 GRQFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSKNP-NVKAIVQKVLHHKG 244 (695)
Q Consensus 186 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~~~-~~~~~~~~i~~~l~ 244 (695)
+.++|.++|++|+||||++..++. ..... ...+.+++..... ...+-+....+..+
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~--~l~~~-g~~V~li~~D~~r~~a~~ql~~~~~~~~ 127 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLAN--KLKKQ-GKSVLLAAGDTFRAAAIEQLEEWAKRLG 127 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH--HHHhc-CCEEEEEeCCCCCHHHHHHHHHHHHhCC
Confidence 358999999999999999988876 33322 2336677665322 12333444555555
No 303
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=95.76 E-value=0.0017 Score=63.42 Aligned_cols=38 Identities=18% Similarity=0.335 Sum_probs=16.7
Q ss_pred cCCCccEEeccccccccc-CchhhcCCCCCceeeccccc
Q 042541 649 AFPNLLEMDIDYCNDLIE-LPDGLCDIVSMEKLRITNCH 686 (695)
Q Consensus 649 ~l~~L~~L~l~~c~~l~~-lP~~i~~L~~L~~L~l~~~~ 686 (695)
.+++|..|||++|..+.. +-..|.+++-|++|.++.|.
T Consensus 311 rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY 349 (419)
T KOG2120|consen 311 RCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCY 349 (419)
T ss_pred hCCceeeeccccccccCchHHHHHHhcchheeeehhhhc
Confidence 445555555555433321 11223444555555555554
No 304
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.75 E-value=0.021 Score=55.29 Aligned_cols=23 Identities=17% Similarity=0.495 Sum_probs=20.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhc
Q 042541 187 RQFIVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 187 ~~vv~I~G~gGiGKTtLa~~~~~ 209 (695)
.+++.|+|+.|.|||||.+.+..
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHH
Confidence 48899999999999999998874
No 305
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.74 E-value=0.2 Score=55.70 Aligned_cols=92 Identities=17% Similarity=0.293 Sum_probs=59.4
Q ss_pred CCCCCcchHHHHHHHHH---------cCC---ceEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCCCCCHHH
Q 042541 167 ISPGLDVPLKELKMELF---------KDG---RQFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSKNPNVKA 234 (695)
Q Consensus 167 ~~vGr~~~~~~l~~~L~---------~~~---~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~~~~~~~ 234 (695)
++=|.++.+.+|.+-+. ..+ ..=|.++|++|.|||-+|++|+.. |. .-+++|... +
T Consensus 673 DVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATE------cs--L~FlSVKGP----E 740 (953)
T KOG0736|consen 673 DVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATE------CS--LNFLSVKGP----E 740 (953)
T ss_pred cccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhh------ce--eeEEeecCH----H
Confidence 44567777777877664 222 346889999999999999999872 33 446676653 2
Q ss_pred HHHHHHHhcCCCCCCCCChHHHHHHHHHHH-HhcCCCcEEEEEeCCCCCC
Q 042541 235 IVQKVLHHKGYPVPEFQTDEAAINDLERFF-KQMRIEAILLVLDDVWPGS 283 (695)
Q Consensus 235 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~-~~l~~~~~LlVlDdv~~~~ 283 (695)
++..- +|. ..+.+++.+ ++-.-++|+|.||.+++..
T Consensus 741 LLNMY---VGq----------SE~NVR~VFerAR~A~PCVIFFDELDSlA 777 (953)
T KOG0736|consen 741 LLNMY---VGQ----------SEENVREVFERARSAAPCVIFFDELDSLA 777 (953)
T ss_pred HHHHH---hcc----------hHHHHHHHHHHhhccCCeEEEeccccccC
Confidence 22221 121 123345555 4446889999999986543
No 306
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=95.73 E-value=0.0071 Score=57.82 Aligned_cols=21 Identities=48% Similarity=0.797 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 042541 189 FIVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 189 vv~I~G~gGiGKTtLa~~~~~ 209 (695)
||+|.|++|+||||+|+.+..
T Consensus 1 IIgI~G~sgSGKTTla~~L~~ 21 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQ 21 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999999987
No 307
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=95.73 E-value=0.007 Score=53.33 Aligned_cols=21 Identities=38% Similarity=0.509 Sum_probs=19.2
Q ss_pred EEEEcCCCCcHHHHHHHHhcc
Q 042541 190 IVVSAPGGYGKTTLVQRLCKD 210 (695)
Q Consensus 190 v~I~G~gGiGKTtLa~~~~~~ 210 (695)
|+|.|..|+||||+|+.+...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999999873
No 308
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=95.69 E-value=0.05 Score=52.44 Aligned_cols=49 Identities=18% Similarity=0.247 Sum_probs=37.0
Q ss_pred CCCCCcchHHHHHHHHHc-------------CCceEEEEEcCCCCcHHHHHHHHhccccccccC
Q 042541 167 ISPGLDVPLKELKMELFK-------------DGRQFIVVSAPGGYGKTTLVQRLCKDDQVQGKF 217 (695)
Q Consensus 167 ~~vGr~~~~~~l~~~L~~-------------~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f 217 (695)
.+-|-.++++++.+...- +.++=|.++|++|.|||-+|++|+| +....|
T Consensus 178 dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravan--rtdacf 239 (435)
T KOG0729|consen 178 DVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVAN--RTDACF 239 (435)
T ss_pred cccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhc--ccCceE
Confidence 345577778888776551 2357789999999999999999999 555544
No 309
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=95.66 E-value=0.051 Score=55.98 Aligned_cols=58 Identities=14% Similarity=0.126 Sum_probs=39.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhccccccccC---CCcEEEEEeCCCCCHHHHHHHHHHhcCC
Q 042541 187 RQFIVVSAPGGYGKTTLVQRLCKDDQVQGKF---KDDIFYVTVSKNPNVKAIVQKVLHHKGY 245 (695)
Q Consensus 187 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f---~~~~~wv~~~~~~~~~~~~~~i~~~l~~ 245 (695)
..++.|+|.+|+|||||+..++......... ...++|++..+.++...+ .++.+.++.
T Consensus 96 g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~Rl-~~ia~~~~~ 156 (316)
T TIGR02239 96 GSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERL-LAIAERYGL 156 (316)
T ss_pred CeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHHH-HHHHHHcCC
Confidence 5889999999999999998886522221111 124789999888877764 444555443
No 310
>PF12061 DUF3542: Protein of unknown function (DUF3542); InterPro: IPR021929 R1 is a gene for resistance to late blight, the most destructive disease in potato cultivation worldwide. The R1 gene belongs to the class of plant genes for pathogen resistance that have a leucine zipper motif, a putative nucleotide binding domain and a leucine-rich repeat domain []. Most proteins matching this entry are found associated with PF00931 from PFAM.
Probab=95.66 E-value=0.014 Score=57.33 Aligned_cols=78 Identities=15% Similarity=0.307 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHhhhHHHHHH-HHhhhccCCChHHHHHHHHHHHHHHHHHHhccc
Q 042541 9 ALLGAVFGELLKAVSEEKDKAVTFKDRLEQLESTLRNSIPWIEEI-EKLNQVLDRPKQETENLVRMMEQVEQLVRKCSK 86 (695)
Q Consensus 9 a~~~~v~~kl~~~l~~~~~~~~~~~~~l~~L~~~L~~i~~~l~~a-e~~~~~~~~~~~wl~~l~~~~~d~ed~ld~~~~ 86 (695)
+.+..+++++-.+...+.....-++.+++.++.+++.+|.||+.. ++.+...+.....+.++...||++|.++|-+..
T Consensus 296 GyVdFlL~NLkdfq~rysdSlaflKnQiqvIQ~elesLqpFLk~V~ee~~nkh~~~ed~a~~ii~kAyevEYVVDaCi~ 374 (402)
T PF12061_consen 296 GYVDFLLKNLKDFQGRYSDSLAFLKNQIQVIQTELESLQPFLKHVVEEPHNKHDTNEDCATQIIRKAYEVEYVVDACIS 374 (402)
T ss_pred cHHHHHHhhHHHHhccccchHHHHHHHHHHHHHHHHHhhHHHHHHHhccchhhhhhhhHHHHHHHHHhheeeeeehhhc
Confidence 357788889988888888888889999999999999999999986 665666666889999999999999999998865
No 311
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=95.65 E-value=0.034 Score=54.12 Aligned_cols=41 Identities=15% Similarity=0.084 Sum_probs=28.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhccccccc-cCCCcEEEEEeCCCCC
Q 042541 189 FIVVSAPGGYGKTTLVQRLCKDDQVQG-KFKDDIFYVTVSKNPN 231 (695)
Q Consensus 189 vv~I~G~gGiGKTtLa~~~~~~~~~~~-~f~~~~~wv~~~~~~~ 231 (695)
+|+|.|.+|+||||+|+.+.. .+.. .....+..++....+.
T Consensus 1 IigI~G~sGSGKTTla~~L~~--~l~~~~~~~~v~vi~~D~f~~ 42 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQA--LLSRWPDHPNVELITTDGFLY 42 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHH--HHhhcCCCCcEEEEecCcccC
Confidence 589999999999999999987 3321 1222355666655443
No 312
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=95.65 E-value=0.013 Score=52.97 Aligned_cols=37 Identities=22% Similarity=0.288 Sum_probs=27.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEe
Q 042541 187 RQFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTV 226 (695)
Q Consensus 187 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~ 226 (695)
..+|.|+|.+|+||||||+++.+ ++...-.. +++++.
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~--~L~~~g~~-~~~LDg 38 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALER--RLFARGIK-VYLLDG 38 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHH--HHHHTTS--EEEEEH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH--HHHHcCCc-EEEecC
Confidence 46899999999999999999998 55554333 556543
No 313
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=95.62 E-value=0.34 Score=49.84 Aligned_cols=49 Identities=24% Similarity=0.231 Sum_probs=35.6
Q ss_pred eEecCCCChHHHHHHHHHhccCCCCCCCCCchHHHHHHHHhcCCchhHH
Q 042541 313 VHYLKPLTYEAARTLFLHSANLQDGNSYIPDENIVSKILRACKGCPLAL 361 (695)
Q Consensus 313 ~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai 361 (695)
++++++++.+|+..++.......--......+...+++.-..+|+|.-+
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e~~~~~s~GNp~el 306 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADSGWLRSRVDEELVLEKLFLSSNGNPREL 306 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHCCccccCCCCHHHHHHHHHhcCCCHHHh
Confidence 6789999999999999887654443222334566777777789999643
No 314
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=95.62 E-value=0.18 Score=56.42 Aligned_cols=45 Identities=9% Similarity=0.106 Sum_probs=37.5
Q ss_pred CCCCCCCcchHHHHHHHHH--cCCceEEEEEcCCCCcHHHHHHHHhc
Q 042541 165 PVISPGLDVPLKELKMELF--KDGRQFIVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 165 ~~~~vGr~~~~~~l~~~L~--~~~~~vv~I~G~gGiGKTtLa~~~~~ 209 (695)
...++|....++++.+.+. .....-|.|+|..|+|||++|+.+++
T Consensus 195 ~~~liG~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~lA~~ih~ 241 (534)
T TIGR01817 195 EDGIIGKSPAMRQVVDQARVVARSNSTVLLRGESGTGKELIAKAIHY 241 (534)
T ss_pred cCceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCccHHHHHHHHHH
Confidence 4568999999999988876 33345678999999999999999987
No 315
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=95.60 E-value=0.062 Score=55.86 Aligned_cols=44 Identities=16% Similarity=0.094 Sum_probs=36.5
Q ss_pred CCCCCCcchHHHHHHHHH--cCCceEEEEEcCCCCcHHHHHHHHhc
Q 042541 166 VISPGLDVPLKELKMELF--KDGRQFIVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 166 ~~~vGr~~~~~~l~~~L~--~~~~~vv~I~G~gGiGKTtLa~~~~~ 209 (695)
+.++|+...++++.+.+. .....-|.|+|..|+||+++|+.++.
T Consensus 6 ~~liG~S~~~~~~~~~i~~~a~~~~pVlI~GE~GtGK~~lA~~iH~ 51 (326)
T PRK11608 6 DNLLGEANSFLEVLEQVSRLAPLDKPVLIIGERGTGKELIASRLHY 51 (326)
T ss_pred CccEECCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHH
Confidence 457999999999988877 33345688999999999999999875
No 316
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.59 E-value=0.051 Score=53.30 Aligned_cols=94 Identities=16% Similarity=0.203 Sum_probs=53.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCC-----CCCHHHHHHHHHHhcCCCCCCCC--ChHHHHH
Q 042541 186 GRQFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSK-----NPNVKAIVQKVLHHKGYPVPEFQ--TDEAAIN 258 (695)
Q Consensus 186 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~-----~~~~~~~~~~i~~~l~~~~~~~~--~~~~~~~ 258 (695)
+..+++|+|.+|+||||+++.+.. +..--...+ ++.-.+ .....+-..++++.++.+..... ..+-...
T Consensus 38 ~ge~~glVGESG~GKSTlgr~i~~---L~~pt~G~i-~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGG 113 (268)
T COG4608 38 EGETLGLVGESGCGKSTLGRLILG---LEEPTSGEI-LFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGG 113 (268)
T ss_pred CCCEEEEEecCCCCHHHHHHHHHc---CcCCCCceE-EEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCch
Confidence 357899999999999999999986 333222323 443221 11234455667777664321000 0000112
Q ss_pred HHHHHH--HhcCCCcEEEEEeCCCCCC
Q 042541 259 DLERFF--KQMRIEAILLVLDDVWPGS 283 (695)
Q Consensus 259 ~l~~~~--~~l~~~~~LlVlDdv~~~~ 283 (695)
+.+++. +.+.-++-++|.|..-+..
T Consensus 114 QrQRi~IARALal~P~liV~DEpvSaL 140 (268)
T COG4608 114 QRQRIGIARALALNPKLIVADEPVSAL 140 (268)
T ss_pred hhhhHHHHHHHhhCCcEEEecCchhhc
Confidence 233333 6677889999999964443
No 317
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=95.58 E-value=0.1 Score=51.66 Aligned_cols=47 Identities=19% Similarity=0.319 Sum_probs=33.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCCCCCHHHHHHH
Q 042541 187 RQFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSKNPNVKAIVQK 238 (695)
Q Consensus 187 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~~~~~~~~~~~ 238 (695)
..++.|.|.+|+|||++|.++... ..+. ...++|++..+ +..++.+.
T Consensus 21 gs~~lI~G~pGsGKT~la~~~l~~-~~~~--ge~~lyvs~ee--~~~~i~~~ 67 (237)
T TIGR03877 21 RNVVLLSGGPGTGKSIFSQQFLWN-GLQM--GEPGIYVALEE--HPVQVRRN 67 (237)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHH-HHHc--CCcEEEEEeeC--CHHHHHHH
Confidence 589999999999999999887652 2222 22377988866 44555554
No 318
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=95.57 E-value=0.18 Score=52.71 Aligned_cols=117 Identities=18% Similarity=0.248 Sum_probs=70.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCC-CCCHHHHHHHHHHhcCCCCCCC--------------
Q 042541 186 GRQFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSK-NPNVKAIVQKVLHHKGYPVPEF-------------- 250 (695)
Q Consensus 186 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~~-------------- 250 (695)
.+.||..+|.-|.||||-|-.+++ .++. ....+.-|++.- .+..-+-++.+.++.+.+....
T Consensus 99 ~P~vImmvGLQGsGKTTt~~KLA~--~lkk-~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~~~~~~Pv~Iak~al 175 (451)
T COG0541 99 PPTVILMVGLQGSGKTTTAGKLAK--YLKK-KGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFGSGTEKDPVEIAKAAL 175 (451)
T ss_pred CCeEEEEEeccCCChHhHHHHHHH--HHHH-cCCceEEEecccCChHHHHHHHHHHHHcCCceecCCCCCCHHHHHHHHH
Confidence 368999999999999999988877 3444 333355555442 2344555666777765433221
Q ss_pred -------------------CChHHHHHHHHHHHHhcCCCcEEEEEeCCCCCC-hHHHhhhccCCCCCEEEEEcCC
Q 042541 251 -------------------QTDEAAINDLERFFKQMRIEAILLVLDDVWPGS-ESLLQKLGFQLPDYKILVTSRS 305 (695)
Q Consensus 251 -------------------~~~~~~~~~l~~~~~~l~~~~~LlVlDdv~~~~-~~~~~~l~~~~~gs~iivTtR~ 305 (695)
.-+++..+++.++-+.+.....|+|+|-.--.+ ......|....+=+-||+|==+
T Consensus 176 ~~ak~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~GQdA~~~A~aF~e~l~itGvIlTKlD 250 (451)
T COG0541 176 EKAKEEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIGQDAVNTAKAFNEALGITGVILTKLD 250 (451)
T ss_pred HHHHHcCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccchHHHHHHHHHhhhcCCceEEEEccc
Confidence 113344555555556667777888888763322 2244556655554667776443
No 319
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=95.57 E-value=0.0094 Score=46.08 Aligned_cols=21 Identities=29% Similarity=0.624 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 042541 189 FIVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 189 vv~I~G~gGiGKTtLa~~~~~ 209 (695)
+|+|.|..|+||||+++.+.+
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~ 21 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAE 21 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999887
No 320
>PRK05480 uridine/cytidine kinase; Provisional
Probab=95.56 E-value=0.011 Score=57.27 Aligned_cols=25 Identities=24% Similarity=0.357 Sum_probs=22.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhc
Q 042541 185 DGRQFIVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 185 ~~~~vv~I~G~gGiGKTtLa~~~~~ 209 (695)
.+..+|+|.|.+|+|||||++.+..
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~ 28 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYE 28 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3567999999999999999999987
No 321
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=95.55 E-value=0.11 Score=49.04 Aligned_cols=115 Identities=17% Similarity=0.196 Sum_probs=58.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEE---eCCCCCHHH------HHHHHHHhcCCCCC---CCCChH
Q 042541 187 RQFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVT---VSKNPNVKA------IVQKVLHHKGYPVP---EFQTDE 254 (695)
Q Consensus 187 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~---~~~~~~~~~------~~~~i~~~l~~~~~---~~~~~~ 254 (695)
..+++|+|..|.|||||++.++.. .......+ +++ +.. .+... ...++++.++.... ......
T Consensus 25 G~~~~l~G~nGsGKStLl~~i~G~---~~~~~G~v-~~~g~~~~~-~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS 99 (180)
T cd03214 25 GEIVGILGPNGAGKSTLLKTLAGL---LKPSSGEI-LLDGKDLAS-LSPKELARKIAYVPQALELLGLAHLADRPFNELS 99 (180)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC---CCCCCcEE-EECCEECCc-CCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCC
Confidence 478999999999999999999862 22233323 332 221 12211 11224555543210 001111
Q ss_pred HHHHHHHHHHHhcCCCcEEEEEeCCCCCCh-----HHHhhhccC-CC-CCEEEEEcCCC
Q 042541 255 AAINDLERFFKQMRIEAILLVLDDVWPGSE-----SLLQKLGFQ-LP-DYKILVTSRSE 306 (695)
Q Consensus 255 ~~~~~l~~~~~~l~~~~~LlVlDdv~~~~~-----~~~~~l~~~-~~-gs~iivTtR~~ 306 (695)
....+.-.+...+-..+-++++|+--..-+ .+.+.+... .. |..||++|.+.
T Consensus 100 ~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~ 158 (180)
T cd03214 100 GGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDL 158 (180)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 122222223355667889999999743332 122222221 12 66778877654
No 322
>PTZ00301 uridine kinase; Provisional
Probab=95.55 E-value=0.017 Score=55.55 Aligned_cols=23 Identities=26% Similarity=0.419 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhc
Q 042541 187 RQFIVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 187 ~~vv~I~G~gGiGKTtLa~~~~~ 209 (695)
..+|+|.|.+|+||||||+.+.+
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~ 25 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVS 25 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHH
Confidence 46899999999999999998876
No 323
>PRK08233 hypothetical protein; Provisional
Probab=95.53 E-value=0.011 Score=55.79 Aligned_cols=23 Identities=43% Similarity=0.629 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhc
Q 042541 187 RQFIVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 187 ~~vv~I~G~gGiGKTtLa~~~~~ 209 (695)
..+|+|.|.+|+||||||+.++.
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~ 25 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTH 25 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 47899999999999999999986
No 324
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=95.52 E-value=0.018 Score=54.38 Aligned_cols=21 Identities=24% Similarity=0.362 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 042541 189 FIVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 189 vv~I~G~gGiGKTtLa~~~~~ 209 (695)
||.|+|++|+||||+|+.++.
T Consensus 1 ~i~i~G~pGsGKst~a~~la~ 21 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVE 21 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999876
No 325
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=95.50 E-value=0.05 Score=54.07 Aligned_cols=95 Identities=11% Similarity=0.130 Sum_probs=57.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhccccc--cccCCCcEEEEEeCCCC-CHHHHHHHHHHhcCCC-------CCCCCChH-
Q 042541 186 GRQFIVVSAPGGYGKTTLVQRLCKDDQV--QGKFKDDIFYVTVSKNP-NVKAIVQKVLHHKGYP-------VPEFQTDE- 254 (695)
Q Consensus 186 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~--~~~f~~~~~wv~~~~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~- 254 (695)
..+-++|.|..|+|||+|+..+.+...+ +++-+. ++++-+++.. ...++..++...-... ..+.....
T Consensus 68 ~GQR~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~v-~V~~~IGeR~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~~r 146 (276)
T cd01135 68 RGQKIPIFSGSGLPHNELAAQIARQAGVVGEEENFA-VVFAAMGITMEDARFFKDDFEETGALERVVLFLNLANDPTIER 146 (276)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHhhhccccCCCCE-EEEEEeccccHHHHHHHHHhhhcCCcceEEEEEecCCCCHHHH
Confidence 3577899999999999999988874331 112233 6688887654 5677777776642211 11111111
Q ss_pred ----HHHHHHHHHHHhcCCCcEEEEEeCCCC
Q 042541 255 ----AAINDLERFFKQMRIEAILLVLDDVWP 281 (695)
Q Consensus 255 ----~~~~~l~~~~~~l~~~~~LlVlDdv~~ 281 (695)
...-.+.+.+..-.++++|+++||+..
T Consensus 147 ~~a~~~a~aiAEyfrd~~g~~VLl~~D~ltr 177 (276)
T cd01135 147 IITPRMALTTAEYLAYEKGKHVLVILTDMTN 177 (276)
T ss_pred HHHHHHHHHHHHHHHhccCCeEEEEEcChhH
Confidence 112234444433248999999999843
No 326
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.50 E-value=0.15 Score=47.75 Aligned_cols=24 Identities=38% Similarity=0.494 Sum_probs=21.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhc
Q 042541 186 GRQFIVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 186 ~~~vv~I~G~gGiGKTtLa~~~~~ 209 (695)
...+++|+|+.|+|||||++.+..
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~G 47 (177)
T cd03222 24 EGEVIGIVGPNGTGKTTAVKILAG 47 (177)
T ss_pred CCCEEEEECCCCChHHHHHHHHHc
Confidence 457999999999999999999886
No 327
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=95.50 E-value=0.018 Score=51.38 Aligned_cols=44 Identities=25% Similarity=0.418 Sum_probs=32.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCCCCCHHHHHHHHHHhcCCC
Q 042541 189 FIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSKNPNVKAIVQKVLHHKGYP 246 (695)
Q Consensus 189 vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~~~~~~~~~~~i~~~l~~~ 246 (695)
+|.|.|++|+||||+|+.++++ +... .++ .-.+++++++..|.+
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~------~gl~--~vs------aG~iFR~~A~e~gms 45 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEH------LGLK--LVS------AGTIFREMARERGMS 45 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHH------hCCc--eee------ccHHHHHHHHHcCCC
Confidence 6899999999999999999873 2211 222 235788888888764
No 328
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=95.50 E-value=0.13 Score=56.57 Aligned_cols=92 Identities=16% Similarity=0.216 Sum_probs=55.7
Q ss_pred CCCCCCCcchHHHH---HHHHHcCC---------ceEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCCCCCH
Q 042541 165 PVISPGLDVPLKEL---KMELFKDG---------RQFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSKNPNV 232 (695)
Q Consensus 165 ~~~~vGr~~~~~~l---~~~L~~~~---------~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~~~~~ 232 (695)
-.+.-|.++..+++ ++.|.++. ++-|.++|++|.|||.||++++....+. +.+.|...
T Consensus 149 F~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VP--------Ff~iSGS~-- 218 (596)
T COG0465 149 FADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVP--------FFSISGSD-- 218 (596)
T ss_pred hhhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCC--------ceeccchh--
Confidence 34568888765555 45555432 5678999999999999999999843332 22333221
Q ss_pred HHHHHHHHHhcCCCCCCCCChHHHHHHHHHHH-HhcCCCcEEEEEeCCCC
Q 042541 233 KAIVQKVLHHKGYPVPEFQTDEAAINDLERFF-KQMRIEAILLVLDDVWP 281 (695)
Q Consensus 233 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~-~~l~~~~~LlVlDdv~~ 281 (695)
.++.+-+- ...+.+.++ +..+.-++++++|.++.
T Consensus 219 ------FVemfVGv---------GAsRVRdLF~qAkk~aP~IIFIDEiDA 253 (596)
T COG0465 219 ------FVEMFVGV---------GASRVRDLFEQAKKNAPCIIFIDEIDA 253 (596)
T ss_pred ------hhhhhcCC---------CcHHHHHHHHHhhccCCCeEEEehhhh
Confidence 11111110 123444555 55567789999998753
No 329
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=95.49 E-value=0.011 Score=53.40 Aligned_cols=21 Identities=48% Similarity=0.857 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 042541 189 FIVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 189 vv~I~G~gGiGKTtLa~~~~~ 209 (695)
+|.++|++|+||||+|+.+..
T Consensus 1 lii~~G~pgsGKSt~a~~l~~ 21 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAK 21 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 688999999999999999885
No 330
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=95.49 E-value=0.011 Score=57.08 Aligned_cols=24 Identities=25% Similarity=0.412 Sum_probs=21.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhc
Q 042541 186 GRQFIVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 186 ~~~vv~I~G~gGiGKTtLa~~~~~ 209 (695)
...+|+|+|++|+|||||++.+..
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~ 28 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYE 28 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999999986
No 331
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=95.49 E-value=0.082 Score=54.94 Aligned_cols=42 Identities=17% Similarity=0.143 Sum_probs=34.1
Q ss_pred CCCCcchHHHHHHHHH--cCCceEEEEEcCCCCcHHHHHHHHhc
Q 042541 168 SPGLDVPLKELKMELF--KDGRQFIVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 168 ~vGr~~~~~~l~~~L~--~~~~~vv~I~G~gGiGKTtLa~~~~~ 209 (695)
+||....++++.+.+. .....-|.|+|..|+||+++|+.+++
T Consensus 1 liG~S~~m~~~~~~~~~~a~~~~pVLI~GE~GtGK~~lAr~iH~ 44 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAPLDRPVLIIGERGTGKELIAARLHY 44 (329)
T ss_pred CCcCCHHHHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHH
Confidence 4788888888887776 33345689999999999999999876
No 332
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.48 E-value=0.0049 Score=60.28 Aligned_cols=85 Identities=18% Similarity=0.194 Sum_probs=40.0
Q ss_pred CCCCCcEEEEcccCCCCcccCc-ccccccCCCCcEEEeccCCCCC-cccc-cccccccEEeeccccCCcccccchhhhcc
Q 042541 572 KMDELKVLIVTNYGFSPAELNN-FRVLSALSKLKKIRLEHVSLPN-SLAT-VRMNHLQKVSLVMCNVGQVFRNSTFRISD 648 (695)
Q Consensus 572 ~l~~Lr~L~l~~~~~~~~~~~~-~~~l~~l~~L~~L~L~~~~l~~-lp~i-~~l~~L~~L~l~~~~i~~~~~~~~~~l~~ 648 (695)
....++.|||.+|.++. +.. ...+.+|+.|++|+|+.|++.+ +-+. ..+.+|++|-|.++.+...-.. ...+
T Consensus 69 ~~~~v~elDL~~N~iSd--WseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~---s~l~ 143 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISD--WSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQST---SSLD 143 (418)
T ss_pred Hhhhhhhhhcccchhcc--HHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhh---hhhh
Confidence 34556666666665531 111 1224556666666666665541 1111 2355666666666644321110 0111
Q ss_pred cCCCccEEecccc
Q 042541 649 AFPNLLEMDIDYC 661 (695)
Q Consensus 649 ~l~~L~~L~l~~c 661 (695)
.+|.++.|.++.|
T Consensus 144 ~lP~vtelHmS~N 156 (418)
T KOG2982|consen 144 DLPKVTELHMSDN 156 (418)
T ss_pred cchhhhhhhhccc
Confidence 4555555555553
No 333
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=95.48 E-value=0.028 Score=58.98 Aligned_cols=45 Identities=29% Similarity=0.374 Sum_probs=36.3
Q ss_pred CCCCCCCcchHHHHHHHHHcC--------------CceEEEEEcCCCCcHHHHHHHHhc
Q 042541 165 PVISPGLDVPLKELKMELFKD--------------GRQFIVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 165 ~~~~vGr~~~~~~l~~~L~~~--------------~~~vv~I~G~gGiGKTtLa~~~~~ 209 (695)
..+++|.++.++.+...+... .++-|.++|++|+|||++|+.+..
T Consensus 11 d~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~ 69 (441)
T TIGR00390 11 DKYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAK 69 (441)
T ss_pred hhhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHH
Confidence 456899998888887666531 146789999999999999999987
No 334
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=95.46 E-value=0.1 Score=60.38 Aligned_cols=61 Identities=7% Similarity=0.061 Sum_probs=43.2
Q ss_pred CCCCCCcchHHHHHHHHH--cCCceEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCCC
Q 042541 166 VISPGLDVPLKELKMELF--KDGRQFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSKN 229 (695)
Q Consensus 166 ~~~vGr~~~~~~l~~~L~--~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~~ 229 (695)
..++|+...++++.+.+. .....-|.|+|..|+|||++|+.+++.. .+.. ...+.+++...
T Consensus 376 ~~liG~S~~~~~~~~~~~~~a~~~~pVLI~GE~GTGK~~lA~~ih~~s-~r~~--~~~v~i~c~~~ 438 (686)
T PRK15429 376 GEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLS-GRNN--RRMVKMNCAAM 438 (686)
T ss_pred cceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhc-CCCC--CCeEEEecccC
Confidence 357999999988877766 3344578999999999999999998632 1122 22446666543
No 335
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.46 E-value=0.06 Score=56.81 Aligned_cols=92 Identities=21% Similarity=0.294 Sum_probs=53.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhccccccc-cCCCcEEEEEeCCCC-CHHHHHHHHHHhcCCCCCCCCChHHHHHHHHHH
Q 042541 186 GRQFIVVSAPGGYGKTTLVQRLCKDDQVQG-KFKDDIFYVTVSKNP-NVKAIVQKVLHHKGYPVPEFQTDEAAINDLERF 263 (695)
Q Consensus 186 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~-~f~~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~ 263 (695)
..++|.++|+.|+||||.+..++....... +-...+..+++.... ....-+....+.++.+...... ...+...
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~----~~~l~~~ 248 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIES----FKDLKEE 248 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCc----HHHHHHH
Confidence 357999999999999999988876322211 122336566665432 2333366666667665322222 2334444
Q ss_pred HHhcCCCcEEEEEeCCCCC
Q 042541 264 FKQMRIEAILLVLDDVWPG 282 (695)
Q Consensus 264 ~~~l~~~~~LlVlDdv~~~ 282 (695)
+..+ .+.-++++|.+...
T Consensus 249 L~~~-~~~DlVLIDTaGr~ 266 (388)
T PRK12723 249 ITQS-KDFDLVLVDTIGKS 266 (388)
T ss_pred HHHh-CCCCEEEEcCCCCC
Confidence 4344 34568889988543
No 336
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=95.43 E-value=0.036 Score=52.85 Aligned_cols=42 Identities=24% Similarity=0.502 Sum_probs=28.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhccccccccC-------CCcEEEEEeCCC
Q 042541 188 QFIVVSAPGGYGKTTLVQRLCKDDQVQGKF-------KDDIFYVTVSKN 229 (695)
Q Consensus 188 ~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f-------~~~~~wv~~~~~ 229 (695)
.++.|+|++|+||||++..+..+.-....| +.+++|++....
T Consensus 33 ~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~ 81 (193)
T PF13481_consen 33 ELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDS 81 (193)
T ss_dssp SEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCC
Confidence 588999999999999998877642221112 345889888776
No 337
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=95.42 E-value=0.028 Score=53.88 Aligned_cols=22 Identities=27% Similarity=0.579 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 042541 188 QFIVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 188 ~vv~I~G~gGiGKTtLa~~~~~ 209 (695)
++|.|+|+.|+||||++..+..
T Consensus 2 GlilI~GptGSGKTTll~~ll~ 23 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMID 23 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998776
No 338
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=95.40 E-value=0.12 Score=50.68 Aligned_cols=48 Identities=21% Similarity=0.408 Sum_probs=31.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCCCCCHHHHHHHH
Q 042541 187 RQFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSKNPNVKAIVQKV 239 (695)
Q Consensus 187 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~~~~~~~~~~~i 239 (695)
..++.|.|.+|+||||||.+++.. -.+... .+++++... +..++++.+
T Consensus 24 g~~~~i~G~~G~GKTtl~~~~~~~-~~~~g~--~~~yi~~e~--~~~~~~~~~ 71 (230)
T PRK08533 24 GSLILIEGDESTGKSILSQRLAYG-FLQNGY--SVSYVSTQL--TTTEFIKQM 71 (230)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH-HHhCCC--cEEEEeCCC--CHHHHHHHH
Confidence 469999999999999998666542 222322 356777444 445666655
No 339
>PRK06762 hypothetical protein; Provisional
Probab=95.40 E-value=0.013 Score=54.50 Aligned_cols=23 Identities=30% Similarity=0.580 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhc
Q 042541 187 RQFIVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 187 ~~vv~I~G~gGiGKTtLa~~~~~ 209 (695)
+.+|.|+|++|+||||+|+.+.+
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~ 24 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQE 24 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999887
No 340
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=95.32 E-value=0.12 Score=50.58 Aligned_cols=23 Identities=26% Similarity=0.505 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhc
Q 042541 187 RQFIVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 187 ~~vv~I~G~gGiGKTtLa~~~~~ 209 (695)
..+++|+|+.|.|||||.+.+..
T Consensus 30 G~~~~iiGPNGaGKSTLlK~iLG 52 (254)
T COG1121 30 GEITALIGPNGAGKSTLLKAILG 52 (254)
T ss_pred CcEEEEECCCCCCHHHHHHHHhC
Confidence 47899999999999999999876
No 341
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=95.30 E-value=0.16 Score=48.56 Aligned_cols=22 Identities=18% Similarity=0.301 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 042541 188 QFIVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 188 ~vv~I~G~gGiGKTtLa~~~~~ 209 (695)
++++|+|+.|.|||||.+.+.-
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~ 47 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGV 47 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHH
Confidence 7999999999999999998864
No 342
>PRK14527 adenylate kinase; Provisional
Probab=95.30 E-value=0.033 Score=53.04 Aligned_cols=25 Identities=28% Similarity=0.508 Sum_probs=22.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhc
Q 042541 185 DGRQFIVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 185 ~~~~vv~I~G~gGiGKTtLa~~~~~ 209 (695)
....+|.|+|++|+||||+|+.+++
T Consensus 4 ~~~~~i~i~G~pGsGKsT~a~~La~ 28 (191)
T PRK14527 4 TKNKVVIFLGPPGAGKGTQAERLAQ 28 (191)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3467899999999999999999876
No 343
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.29 E-value=0.063 Score=57.69 Aligned_cols=87 Identities=20% Similarity=0.326 Sum_probs=47.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcccc-ccccCCCcEEEEEeCCCC-CHHHHHHHHHHhcCCCCCCCCChHHHHHHHHHHH
Q 042541 187 RQFIVVSAPGGYGKTTLVQRLCKDDQ-VQGKFKDDIFYVTVSKNP-NVKAIVQKVLHHKGYPVPEFQTDEAAINDLERFF 264 (695)
Q Consensus 187 ~~vv~I~G~gGiGKTtLa~~~~~~~~-~~~~f~~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~ 264 (695)
.+++.++|++|+||||++..++.... ....+ .+..++..... ...+-+....+.++.+....... ..+...+
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~--~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~----~~l~~~l 294 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKK--KVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDP----KELAKAL 294 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCC--eEEEEECCccHHHHHHHHHHHHHHhCCceEccCCH----HhHHHHH
Confidence 36899999999999999988765222 12222 36677764422 12233344444455443222222 2333444
Q ss_pred HhcCCCcEEEEEeCCC
Q 042541 265 KQMRIEAILLVLDDVW 280 (695)
Q Consensus 265 ~~l~~~~~LlVlDdv~ 280 (695)
..+. ..=++++|..-
T Consensus 295 ~~~~-~~DlVlIDt~G 309 (424)
T PRK05703 295 EQLR-DCDVILIDTAG 309 (424)
T ss_pred HHhC-CCCEEEEeCCC
Confidence 3333 35688889763
No 344
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=95.25 E-value=0.027 Score=53.66 Aligned_cols=43 Identities=28% Similarity=0.403 Sum_probs=30.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCCCCCHH
Q 042541 189 FIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSKNPNVK 233 (695)
Q Consensus 189 vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~~~~~~ 233 (695)
.|+|+|-||+||||+|..++. ++...=...++-|+...+++..
T Consensus 2 kIaI~GKGG~GKTtiaalll~--~l~~~~~~~VLvVDaDpd~nL~ 44 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLK--RLLSKGGYNVLVVDADPDSNLP 44 (255)
T ss_pred eEEEecCCCccHHHHHHHHHH--HHHhcCCceEEEEeCCCCCChH
Confidence 589999999999999988555 3332211227788887776644
No 345
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=95.24 E-value=0.071 Score=51.62 Aligned_cols=24 Identities=29% Similarity=0.646 Sum_probs=21.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhc
Q 042541 186 GRQFIVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 186 ~~~vv~I~G~gGiGKTtLa~~~~~ 209 (695)
..-.|+|+|++|+|||||.+.++-
T Consensus 28 ~GEfvsilGpSGcGKSTLLriiAG 51 (248)
T COG1116 28 KGEFVAILGPSGCGKSTLLRLIAG 51 (248)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 347899999999999999999864
No 346
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=95.23 E-value=0.044 Score=58.87 Aligned_cols=95 Identities=12% Similarity=0.131 Sum_probs=56.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCCCC-CHHHHHHHHHHhcCCC-------CCCCCChH--
Q 042541 185 DGRQFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSKNP-NVKAIVQKVLHHKGYP-------VPEFQTDE-- 254 (695)
Q Consensus 185 ~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~-- 254 (695)
...+-++|.|.+|+|||||+.++.+... +.+-+. ++++-+++.. ...++...+...-... ..+.+...
T Consensus 141 gkGQR~gIfa~~G~GKt~Ll~~~~~~~~-~~~~dv-~V~~liGER~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~ 218 (461)
T PRK12597 141 AKGGKTGLFGGAGVGKTVLMMELIFNIS-KQHSGS-SVFAGVGERSREGHELYHEMKESGVLDKTVMVYGQMNEPPGARM 218 (461)
T ss_pred ccCCEEEeecCCCCChhHHHHHHHHHHH-hhCCCE-EEEEcCCcchHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHH
Confidence 3457899999999999999988887322 123344 5566666543 5667777776542211 11111111
Q ss_pred ---HHHHHHHHHHHhcCCCcEEEEEeCCCC
Q 042541 255 ---AAINDLERFFKQMRIEAILLVLDDVWP 281 (695)
Q Consensus 255 ---~~~~~l~~~~~~l~~~~~LlVlDdv~~ 281 (695)
.....+.+.++.-.++++||++||+-.
T Consensus 219 ~a~~~a~tiAEyfrd~~G~~VLl~~DslTR 248 (461)
T PRK12597 219 RVVLTGLTIAEYLRDEEKEDVLLFIDNIFR 248 (461)
T ss_pred HHHHHHHHHHHHHHHhcCCceEEEeccchH
Confidence 112223344432248999999999843
No 347
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=95.20 E-value=0.031 Score=52.49 Aligned_cols=47 Identities=34% Similarity=0.523 Sum_probs=31.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCCCCCHHHHHHHH
Q 042541 187 RQFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSKNPNVKAIVQKV 239 (695)
Q Consensus 187 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~~~~~~~~~~~i 239 (695)
..+|+|-||-|+||||||+.+.+ +.. |. +++-.+.+++=...+..++
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~--~l~--~~--~~~E~vednp~L~~FY~d~ 50 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAE--HLG--FK--VFYELVEDNPFLDLFYEDP 50 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHH--HhC--Cc--eeeecccCChHHHHHHHhH
Confidence 46899999999999999999988 333 22 4455555554444444443
No 348
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=95.18 E-value=0.087 Score=48.84 Aligned_cols=127 Identities=17% Similarity=0.189 Sum_probs=65.6
Q ss_pred CCCCcchHHHHHHHHH--cCCceEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCCCCCHHHHHHHHHHhcCC
Q 042541 168 SPGLDVPLKELKMELF--KDGRQFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSKNPNVKAIVQKVLHHKGY 245 (695)
Q Consensus 168 ~vGr~~~~~~l~~~L~--~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~~~~~~~~~~~i~~~l~~ 245 (695)
+||.+..++++.+.+. .....-|.|+|..|+||+.+|+.+++. -...-.. .+-|+++. .+.+.+..++.-.-..
T Consensus 1 liG~s~~m~~~~~~~~~~a~~~~pVlI~GE~GtGK~~lA~~IH~~--s~r~~~p-fi~vnc~~-~~~~~~e~~LFG~~~~ 76 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAASSDLPVLITGETGTGKELLARAIHNN--SPRKNGP-FISVNCAA-LPEELLESELFGHEKG 76 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTTSTS-EEEECSTTSSHHHHHHHHHHC--STTTTS--EEEEETTT-S-HHHHHHHHHEBCSS
T ss_pred CEeCCHHHHHHHHHHHHHhCCCCCEEEEcCCCCcHHHHHHHHHHh--hhcccCC-eEEEehhh-hhcchhhhhhhccccc
Confidence 4788888999888777 333456779999999999999999872 2111111 23444443 2444444444433222
Q ss_pred CCCCCCChHHHHHHHHHHHHhcCCCcEEEEEeCCCCCChH----HHhhhcc------CC-----CCCEEEEEcCCC
Q 042541 246 PVPEFQTDEAAINDLERFFKQMRIEAILLVLDDVWPGSES----LLQKLGF------QL-----PDYKILVTSRSE 306 (695)
Q Consensus 246 ~~~~~~~~~~~~~~l~~~~~~l~~~~~LlVlDdv~~~~~~----~~~~l~~------~~-----~gs~iivTtR~~ 306 (695)
.......... ..+. .-..--|+||++...... ++..+.. +. ...|||.||...
T Consensus 77 ~~~~~~~~~~--G~l~------~A~~GtL~Ld~I~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~st~~~ 144 (168)
T PF00158_consen 77 AFTGARSDKK--GLLE------QANGGTLFLDEIEDLPPELQAKLLRVLEEGKFTRLGSDKPVPVDVRIIASTSKD 144 (168)
T ss_dssp SSTTTSSEBE--HHHH------HTTTSEEEEETGGGS-HHHHHHHHHHHHHSEEECCTSSSEEE--EEEEEEESS-
T ss_pred cccccccccC--Ccee------eccceEEeecchhhhHHHHHHHHHHHHhhchhccccccccccccceEEeecCcC
Confidence 1111111000 1111 133557889999877643 2222221 11 146899988754
No 349
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=95.17 E-value=0.087 Score=48.84 Aligned_cols=82 Identities=16% Similarity=0.338 Sum_probs=48.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCCCCCHHHHHHHHHHhcCCCCCCCCChHHHHHHHHHHHHhcC
Q 042541 189 FIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSKNPNVKAIVQKVLHHKGYPVPEFQTDEAAINDLERFFKQMR 268 (695)
Q Consensus 189 vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~~l~ 268 (695)
++.|.|.+|+|||++|.++... ....++|+...+.++. ++...|.+.-......... .+....+.+.++...
T Consensus 1 ~~li~G~~~sGKS~~a~~~~~~------~~~~~~y~at~~~~d~-em~~rI~~H~~~R~~~w~t-~E~~~~l~~~l~~~~ 72 (169)
T cd00544 1 IILVTGGARSGKSRFAERLAAE------LGGPVTYIATAEAFDD-EMAERIARHRKRRPAHWRT-IETPRDLVSALKELD 72 (169)
T ss_pred CEEEECCCCCCHHHHHHHHHHh------cCCCeEEEEccCcCCH-HHHHHHHHHHHhCCCCceE-eecHHHHHHHHHhcC
Confidence 3679999999999999988752 2223778877777654 3444444432222222212 222334555554333
Q ss_pred CCcEEEEEeCC
Q 042541 269 IEAILLVLDDV 279 (695)
Q Consensus 269 ~~~~LlVlDdv 279 (695)
+.-.+++|.+
T Consensus 73 -~~~~VLIDcl 82 (169)
T cd00544 73 -PGDVVLIDCL 82 (169)
T ss_pred -CCCEEEEEcH
Confidence 3447999986
No 350
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=95.17 E-value=0.03 Score=49.27 Aligned_cols=38 Identities=29% Similarity=0.341 Sum_probs=28.9
Q ss_pred chHHHHHHHHHc--CCceEEEEEcCCCCcHHHHHHHHhcc
Q 042541 173 VPLKELKMELFK--DGRQFIVVSAPGGYGKTTLVQRLCKD 210 (695)
Q Consensus 173 ~~~~~l~~~L~~--~~~~vv~I~G~gGiGKTtLa~~~~~~ 210 (695)
++.+++.+.|.. ....+|.+.|.-|+||||+++.++..
T Consensus 6 ~~t~~l~~~l~~~l~~~~~i~l~G~lGaGKTtl~~~l~~~ 45 (133)
T TIGR00150 6 KAMDKFGKAFAKPLDFGTVVLLKGDLGAGKTTLVQGLLQG 45 (133)
T ss_pred HHHHHHHHHHHHhCCCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 345555555552 33569999999999999999999874
No 351
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=95.16 E-value=0.057 Score=54.61 Aligned_cols=45 Identities=13% Similarity=0.035 Sum_probs=29.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhccccccccC-CCcEEEEEeCCCCC
Q 042541 185 DGRQFIVVSAPGGYGKTTLVQRLCKDDQVQGKF-KDDIFYVTVSKNPN 231 (695)
Q Consensus 185 ~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f-~~~~~wv~~~~~~~ 231 (695)
..+.+|+|.|..|+||||+|+.+.. .+.... ...+..++......
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~--ll~~~~~~g~V~vi~~D~f~~ 105 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQA--LLSRWPEHRKVELITTDGFLH 105 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH--HHhhcCCCCceEEEecccccc
Confidence 3468999999999999999987754 222111 12255555555443
No 352
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=95.16 E-value=0.019 Score=57.79 Aligned_cols=90 Identities=18% Similarity=0.231 Sum_probs=47.7
Q ss_pred HHHHHHHHcCCceEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCCCCCHHHHHHHHHHhcCCCCCCCCChHH
Q 042541 176 KELKMELFKDGRQFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSKNPNVKAIVQKVLHHKGYPVPEFQTDEA 255 (695)
Q Consensus 176 ~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~ 255 (695)
..+++.+...+ +-|.++|+.|+|||++++.... .... ....+.-++.+...+...++..+-..+.....
T Consensus 23 ~~ll~~l~~~~-~pvLl~G~~GtGKT~li~~~l~--~l~~-~~~~~~~~~~s~~Tts~~~q~~ie~~l~k~~~------- 91 (272)
T PF12775_consen 23 SYLLDLLLSNG-RPVLLVGPSGTGKTSLIQNFLS--SLDS-DKYLVITINFSAQTTSNQLQKIIESKLEKRRG------- 91 (272)
T ss_dssp HHHHHHHHHCT-EEEEEESSTTSSHHHHHHHHHH--CSTT-CCEEEEEEES-TTHHHHHHHHCCCTTECECTT-------
T ss_pred HHHHHHHHHcC-CcEEEECCCCCchhHHHHhhhc--cCCc-cccceeEeeccCCCCHHHHHHHHhhcEEcCCC-------
Confidence 44555555554 5678999999999999999876 2221 11113345555544444333222111111000
Q ss_pred HHHHHHHHHHhcCCCcEEEEEeCCCCC
Q 042541 256 AINDLERFFKQMRIEAILLVLDDVWPG 282 (695)
Q Consensus 256 ~~~~l~~~~~~l~~~~~LlVlDdv~~~ 282 (695)
..+.--.+|+.++.+||+.-.
T Consensus 92 ------~~~gP~~~k~lv~fiDDlN~p 112 (272)
T PF12775_consen 92 ------RVYGPPGGKKLVLFIDDLNMP 112 (272)
T ss_dssp ------EEEEEESSSEEEEEEETTT-S
T ss_pred ------CCCCCCCCcEEEEEecccCCC
Confidence 000111478999999998544
No 353
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=95.14 E-value=0.076 Score=56.90 Aligned_cols=94 Identities=14% Similarity=0.216 Sum_probs=56.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCCCC-CHHHHHHHHHHhcCCC-------CCCCCChH--
Q 042541 185 DGRQFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSKNP-NVKAIVQKVLHHKGYP-------VPEFQTDE-- 254 (695)
Q Consensus 185 ~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~-- 254 (695)
...+-++|.|.+|+|||||+.++... .....+..++++-+++.. .+.+++.++...-... ..+.+...
T Consensus 142 gkGQR~gIfa~~GvGKt~Ll~~i~~~--~~~~~~~v~V~~liGER~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~ 219 (463)
T PRK09280 142 AKGGKIGLFGGAGVGKTVLIQELINN--IAKEHGGYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARL 219 (463)
T ss_pred ccCCEEEeecCCCCChhHHHHHHHHH--HHhcCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHH
Confidence 34578999999999999999987663 222212335677776544 5677777776642211 11111111
Q ss_pred ---HHHHHHHHHHHhcCCCcEEEEEeCCC
Q 042541 255 ---AAINDLERFFKQMRIEAILLVLDDVW 280 (695)
Q Consensus 255 ---~~~~~l~~~~~~l~~~~~LlVlDdv~ 280 (695)
...-.+.+.++.-+++++||++||+-
T Consensus 220 ~a~~~a~tiAEyfrd~~G~~VLll~DslT 248 (463)
T PRK09280 220 RVALTGLTMAEYFRDVEGQDVLLFIDNIF 248 (463)
T ss_pred HHHHHHHHHHHHHHHhcCCceEEEecchH
Confidence 11223444443336899999999984
No 354
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=95.14 E-value=0.055 Score=54.28 Aligned_cols=80 Identities=16% Similarity=0.263 Sum_probs=36.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCCCCCHHHHHHHHHHhcCCCCCCCCChHHHHHHHHHHH-Hh
Q 042541 188 QFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSKNPNVKAIVQKVLHHKGYPVPEFQTDEAAINDLERFF-KQ 266 (695)
Q Consensus 188 ~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~-~~ 266 (695)
+.|.|+|.+|+||||+|+.+... .... ...+.+++ .. .+. +..-. .............+.... +.
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~--~~~~-~~~v~~i~--~~----~~~---~~~~~--y~~~~~Ek~~R~~l~s~v~r~ 67 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKY--LEEK-GKEVVIIS--DD----SLG---IDRND--YADSKKEKEARGSLKSAVERA 67 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHH--HHHT-T--EEEE---TH----HHH----TTSS--S--GGGHHHHHHHHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHHH--HHhc-CCEEEEEc--cc----ccc---cchhh--hhchhhhHHHHHHHHHHHHHh
Confidence 47899999999999999998873 3221 11133333 21 111 11111 111122333444455555 44
Q ss_pred cCCCcEEEEEeCCCCC
Q 042541 267 MRIEAILLVLDDVWPG 282 (695)
Q Consensus 267 l~~~~~LlVlDdv~~~ 282 (695)
+ ++..++|+||..-.
T Consensus 68 l-s~~~iVI~Dd~nYi 82 (270)
T PF08433_consen 68 L-SKDTIVILDDNNYI 82 (270)
T ss_dssp H-TT-SEEEE-S---S
T ss_pred h-ccCeEEEEeCCchH
Confidence 4 55689999998544
No 355
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.13 E-value=0.05 Score=52.28 Aligned_cols=111 Identities=13% Similarity=0.211 Sum_probs=57.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCCCCCHHHHHHHHHHhcCCCCCCCCC---hHHHHHHHHHH
Q 042541 187 RQFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSKNPNVKAIVQKVLHHKGYPVPEFQT---DEAAINDLERF 263 (695)
Q Consensus 187 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~---~~~~~~~l~~~ 263 (695)
..++.|.|+.|.||||+.+.+.... +..+..+ ++.... ..-.+...|...++........ -.....++..+
T Consensus 29 ~~~~~l~G~n~~GKstll~~i~~~~-~la~~G~---~vpa~~--~~l~~~d~I~~~~~~~d~~~~~~S~fs~e~~~~~~i 102 (204)
T cd03282 29 SRFHIITGPNMSGKSTYLKQIALLA-IMAQIGC---FVPAEY--ATLPIFNRLLSRLSNDDSMERNLSTFASEMSETAYI 102 (204)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH-HHHHcCC---Ccchhh--cCccChhheeEecCCccccchhhhHHHHHHHHHHHH
Confidence 4789999999999999998886431 1111111 221111 1112333444444332211111 12223334433
Q ss_pred HHhcCCCcEEEEEeCCCCCChH---------HHhhhccCCCCCEEEEEcCCC
Q 042541 264 FKQMRIEAILLVLDDVWPGSES---------LLQKLGFQLPDYKILVTSRSE 306 (695)
Q Consensus 264 ~~~l~~~~~LlVlDdv~~~~~~---------~~~~l~~~~~gs~iivTtR~~ 306 (695)
+.. ..++-|+++|......+. .+..+. ..|+.+|+||-..
T Consensus 103 l~~-~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~--~~~~~~i~~TH~~ 151 (204)
T cd03282 103 LDY-ADGDSLVLIDELGRGTSSADGFAISLAILECLI--KKESTVFFATHFR 151 (204)
T ss_pred HHh-cCCCcEEEeccccCCCCHHHHHHHHHHHHHHHH--hcCCEEEEECChH
Confidence 332 356789999998443211 223332 2378899998765
No 356
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=95.12 E-value=0.15 Score=45.94 Aligned_cols=23 Identities=26% Similarity=0.345 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhc
Q 042541 187 RQFIVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 187 ~~vv~I~G~gGiGKTtLa~~~~~ 209 (695)
..+++|+|..|.|||||++.+..
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G 48 (144)
T cd03221 26 GDRIGLVGRNGAGKSTLLKLIAG 48 (144)
T ss_pred CCEEEEECCCCCCHHHHHHHHcC
Confidence 47899999999999999999986
No 357
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.11 E-value=0.68 Score=51.28 Aligned_cols=91 Identities=21% Similarity=0.268 Sum_probs=55.4
Q ss_pred CCCCCcchHHHHHHHHHcC----------C---ceEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCCCCCHH
Q 042541 167 ISPGLDVPLKELKMELFKD----------G---RQFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSKNPNVK 233 (695)
Q Consensus 167 ~~vGr~~~~~~l~~~L~~~----------~---~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~~~~~~ 233 (695)
.+-|..+..+-+.+.+.-+ . ..=|.++|++|+|||-||.+++.. +. .-+++|...
T Consensus 668 digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~------~~--~~fisvKGP---- 735 (952)
T KOG0735|consen 668 DIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASN------SN--LRFISVKGP---- 735 (952)
T ss_pred ecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhh------CC--eeEEEecCH----
Confidence 3445555666666666511 1 245889999999999999988762 33 336777653
Q ss_pred HHHHHHHHhcCCCCCCCCChHHHHHHHHHHH-HhcCCCcEEEEEeCCCCC
Q 042541 234 AIVQKVLHHKGYPVPEFQTDEAAINDLERFF-KQMRIEAILLVLDDVWPG 282 (695)
Q Consensus 234 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~-~~l~~~~~LlVlDdv~~~ 282 (695)
+++.+. +|.+ + +.++.++ ++-.-++|+|.||..++.
T Consensus 736 ElL~Ky---IGaS-------E---q~vR~lF~rA~~a~PCiLFFDEfdSi 772 (952)
T KOG0735|consen 736 ELLSKY---IGAS-------E---QNVRDLFERAQSAKPCILFFDEFDSI 772 (952)
T ss_pred HHHHHH---hccc-------H---HHHHHHHHHhhccCCeEEEecccccc
Confidence 233222 2221 2 2233444 444678999999998654
No 358
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.11 E-value=0.38 Score=47.52 Aligned_cols=91 Identities=20% Similarity=0.352 Sum_probs=56.4
Q ss_pred CCCCCcchHHHHHHHHH---------cCC---ceEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCCCCCHHH
Q 042541 167 ISPGLDVPLKELKMELF---------KDG---RQFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSKNPNVKA 234 (695)
Q Consensus 167 ~~vGr~~~~~~l~~~L~---------~~~---~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~~~~~~~ 234 (695)
.+-|.+...+.|.+.+. .++ .+-|.++|++|.||+-||++|+.. ... . +++||.. +
T Consensus 134 DVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATE--AnS-----T-FFSvSSS----D 201 (439)
T KOG0739|consen 134 DVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATE--ANS-----T-FFSVSSS----D 201 (439)
T ss_pred hhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhh--cCC-----c-eEEeehH----H
Confidence 45788888888877654 121 477999999999999999999873 211 2 4455543 2
Q ss_pred HHHHHHHhcCCCCCCCCChHHHHHHHHHHHHhcCCCcEEEEEeCCCC
Q 042541 235 IVQKVLHHKGYPVPEFQTDEAAINDLERFFKQMRIEAILLVLDDVWP 281 (695)
Q Consensus 235 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~~~LlVlDdv~~ 281 (695)
+....+ | ..+..+..|.++-+ ..++-+|.+|.++.
T Consensus 202 LvSKWm---G-------ESEkLVknLFemAR--e~kPSIIFiDEiDs 236 (439)
T KOG0739|consen 202 LVSKWM---G-------ESEKLVKNLFEMAR--ENKPSIIFIDEIDS 236 (439)
T ss_pred HHHHHh---c-------cHHHHHHHHHHHHH--hcCCcEEEeehhhh
Confidence 222222 1 12222333333332 57899999999853
No 359
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.11 E-value=0.15 Score=47.51 Aligned_cols=24 Identities=29% Similarity=0.534 Sum_probs=21.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhc
Q 042541 186 GRQFIVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 186 ~~~vv~I~G~gGiGKTtLa~~~~~ 209 (695)
...+++|+|+.|.|||||.+.++.
T Consensus 27 ~G~~~~l~G~nGsGKstLl~~i~G 50 (171)
T cd03228 27 PGEKVAIVGPSGSGKSTLLKLLLR 50 (171)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHc
Confidence 357899999999999999999986
No 360
>PTZ00088 adenylate kinase 1; Provisional
Probab=95.08 E-value=0.041 Score=53.77 Aligned_cols=20 Identities=40% Similarity=0.517 Sum_probs=18.9
Q ss_pred EEEEcCCCCcHHHHHHHHhc
Q 042541 190 IVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 190 v~I~G~gGiGKTtLa~~~~~ 209 (695)
|.|.|++|+||||+|+.+++
T Consensus 9 Ivl~G~PGsGK~T~a~~La~ 28 (229)
T PTZ00088 9 IVLFGAPGVGKGTFAEILSK 28 (229)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 88999999999999999876
No 361
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=95.08 E-value=0.078 Score=51.15 Aligned_cols=95 Identities=17% Similarity=0.302 Sum_probs=56.5
Q ss_pred HHHHH-cCCceEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCCCC-CHHHHHHHHHHhcC-------CCCCC
Q 042541 179 KMELF-KDGRQFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSKNP-NVKAIVQKVLHHKG-------YPVPE 249 (695)
Q Consensus 179 ~~~L~-~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~~~-~~~~~~~~i~~~l~-------~~~~~ 249 (695)
++.+. -....-++|.|.+|+|||+|+..+.+.. . -+ .++++-+++.. ...++.+++...-. ....+
T Consensus 6 ID~l~Pig~Gqr~~I~g~~g~GKt~Ll~~i~~~~--~--~d-~~V~~~iGer~~Ev~~~~~~~~~~~~~~~t~vv~~t~~ 80 (215)
T PF00006_consen 6 IDLLFPIGRGQRIGIFGGAGVGKTVLLQEIANNQ--D--AD-VVVYALIGERGREVTEFIEELKGEGALERTVVVAATSD 80 (215)
T ss_dssp HHHHSCEETTSEEEEEESTTSSHHHHHHHHHHHC--T--TT-EEEEEEESECHHHHHHHHHHHHHTTGGGGEEEEEEETT
T ss_pred eccccccccCCEEEEEcCcccccchhhHHHHhcc--c--cc-ceeeeeccccchhHHHHHHHHhhcccccccccccccch
Confidence 34444 1234678999999999999999998742 1 12 24678887653 56667776654411 11111
Q ss_pred CCChHH-----HHHHHHHHHHhcCCCcEEEEEeCC
Q 042541 250 FQTDEA-----AINDLERFFKQMRIEAILLVLDDV 279 (695)
Q Consensus 250 ~~~~~~-----~~~~l~~~~~~l~~~~~LlVlDdv 279 (695)
...... ..-.+.+.+.. +++++|+++||+
T Consensus 81 ~~~~~r~~~~~~a~t~AEyfrd-~G~dVlli~Dsl 114 (215)
T PF00006_consen 81 EPPAARYRAPYTALTIAEYFRD-QGKDVLLIIDSL 114 (215)
T ss_dssp S-HHHHHHHHHHHHHHHHHHHH-TTSEEEEEEETH
T ss_pred hhHHHHhhhhccchhhhHHHhh-cCCceeehhhhh
Confidence 111111 11223444433 799999999998
No 362
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.07 E-value=0.0022 Score=62.11 Aligned_cols=88 Identities=17% Similarity=0.132 Sum_probs=69.7
Q ss_pred ccCCCCcEEEeccCCCCCcccccccccccEEeeccccCCcccccchhhhcccCCCccEEecccccccccCch--hhcCCC
Q 042541 598 SALSKLKKIRLEHVSLPNSLATVRMNHLQKVSLVMCNVGQVFRNSTFRISDAFPNLLEMDIDYCNDLIELPD--GLCDIV 675 (695)
Q Consensus 598 ~~l~~L~~L~L~~~~l~~lp~i~~l~~L~~L~l~~~~i~~~~~~~~~~l~~~l~~L~~L~l~~c~~l~~lP~--~i~~L~ 675 (695)
+.|.+.+.|+.-||.+..+.-+.+|+.|++|.|+-|+|+.+-|-. .+++|+.|+|..| .+.+|.+ -+.+|+
T Consensus 16 sdl~~vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIssL~pl~------rCtrLkElYLRkN-~I~sldEL~YLknlp 88 (388)
T KOG2123|consen 16 SDLENVKKLNCWGCGLDDISICEKMPLLEVLSLSVNKISSLAPLQ------RCTRLKELYLRKN-CIESLDELEYLKNLP 88 (388)
T ss_pred hHHHHhhhhcccCCCccHHHHHHhcccceeEEeeccccccchhHH------HHHHHHHHHHHhc-ccccHHHHHHHhcCc
Confidence 346678889999999987765568999999999999999876643 7899999999874 4555543 267899
Q ss_pred CCceeecccccCCCCCC
Q 042541 676 SMEKLRITNCHRLSALP 692 (695)
Q Consensus 676 ~L~~L~l~~~~~l~~lP 692 (695)
+|+.|.|..|+-.+.-|
T Consensus 89 sLr~LWL~ENPCc~~ag 105 (388)
T KOG2123|consen 89 SLRTLWLDENPCCGEAG 105 (388)
T ss_pred hhhhHhhccCCcccccc
Confidence 99999999988655444
No 363
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=95.07 E-value=0.032 Score=56.00 Aligned_cols=37 Identities=16% Similarity=0.226 Sum_probs=28.6
Q ss_pred HHHHcCCceEEEEEcCCCCcHHHHHHHHhccccccccCC
Q 042541 180 MELFKDGRQFIVVSAPGGYGKTTLVQRLCKDDQVQGKFK 218 (695)
Q Consensus 180 ~~L~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~ 218 (695)
+++...+..+|.|.|.+|+|||||+..+.+ .+.....
T Consensus 97 ~~~~~~~~~~v~l~G~pGsGKTTLl~~l~~--~l~~~~~ 133 (290)
T PRK10463 97 ARFAARKQLVLNLVSSPGSGKTTLLTETLM--RLKDSVP 133 (290)
T ss_pred HHHHhcCCeEEEEECCCCCCHHHHHHHHHH--HhccCCC
Confidence 344456689999999999999999999887 4444443
No 364
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.05 E-value=0.11 Score=48.64 Aligned_cols=23 Identities=30% Similarity=0.457 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhc
Q 042541 187 RQFIVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 187 ~~vv~I~G~gGiGKTtLa~~~~~ 209 (695)
..+++|+|+.|.|||||++.++.
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G 48 (173)
T cd03230 26 GEIYGLLGPNGAGKTTLIKIILG 48 (173)
T ss_pred CcEEEEECCCCCCHHHHHHHHhC
Confidence 46899999999999999999986
No 365
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=95.03 E-value=0.014 Score=49.69 Aligned_cols=20 Identities=45% Similarity=0.708 Sum_probs=18.3
Q ss_pred EEEEcCCCCcHHHHHHHHhc
Q 042541 190 IVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 190 v~I~G~gGiGKTtLa~~~~~ 209 (695)
|.|+|++|+|||+||+.++.
T Consensus 1 I~i~G~~G~GKS~l~~~l~~ 20 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAK 20 (107)
T ss_pred CEEECCCCCCHHHHHHHHHH
Confidence 56999999999999999887
No 366
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=95.01 E-value=0.097 Score=53.48 Aligned_cols=69 Identities=16% Similarity=0.142 Sum_probs=45.2
Q ss_pred CCCCCCCCCCCcchHHHHHHHHHcCCceEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCCCCCHHHHHH
Q 042541 161 APDPPVISPGLDVPLKELKMELFKDGRQFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSKNPNVKAIVQ 237 (695)
Q Consensus 161 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~~~~~~~~~~ 237 (695)
.|..++.++=..+....+...+..+ +.|.|.|++|+||||+|+.++. +.... .+.|+++...+..++..
T Consensus 40 ~p~~d~~y~f~~~~~~~vl~~l~~~--~~ilL~G~pGtGKTtla~~lA~--~l~~~----~~rV~~~~~l~~~DliG 108 (327)
T TIGR01650 40 VPDIDPAYLFDKATTKAICAGFAYD--RRVMVQGYHGTGKSTHIEQIAA--RLNWP----CVRVNLDSHVSRIDLVG 108 (327)
T ss_pred CCCCCCCccCCHHHHHHHHHHHhcC--CcEEEEeCCCChHHHHHHHHHH--HHCCC----eEEEEecCCCChhhcCC
Confidence 3443444444555566677777543 4699999999999999999987 33322 44677776665555443
No 367
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.01 E-value=0.072 Score=57.77 Aligned_cols=88 Identities=20% Similarity=0.295 Sum_probs=47.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhccccccccC-CCcEEEEEeCCCC-CHHHHHHHHHHhcCCCCCCCCChHHHHHHHHHHH
Q 042541 187 RQFIVVSAPGGYGKTTLVQRLCKDDQVQGKF-KDDIFYVTVSKNP-NVKAIVQKVLHHKGYPVPEFQTDEAAINDLERFF 264 (695)
Q Consensus 187 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f-~~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~ 264 (695)
..+|+|+|++|+||||++..+.. ...... ...+..++..... ...+.+....+.++........ ...+...+
T Consensus 350 G~vIaLVGPtGvGKTTtaakLAa--~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d----~~~L~~aL 423 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLAQ--RFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADS----AESLLDLL 423 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHHH--HHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCc----HHHHHHHH
Confidence 57999999999999999988876 222221 1225556553221 2223333333444432221111 12344444
Q ss_pred HhcCCCcEEEEEeCCCC
Q 042541 265 KQMRIEAILLVLDDVWP 281 (695)
Q Consensus 265 ~~l~~~~~LlVlDdv~~ 281 (695)
+.+.+ .-+|++|..-.
T Consensus 424 ~~l~~-~DLVLIDTaG~ 439 (559)
T PRK12727 424 ERLRD-YKLVLIDTAGM 439 (559)
T ss_pred HHhcc-CCEEEecCCCc
Confidence 44443 55888898753
No 368
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=95.01 E-value=0.02 Score=54.52 Aligned_cols=28 Identities=29% Similarity=0.374 Sum_probs=23.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcccccccc
Q 042541 187 RQFIVVSAPGGYGKTTLVQRLCKDDQVQGK 216 (695)
Q Consensus 187 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~ 216 (695)
+.+|+|.|.+|+||||+|+.++. .+...
T Consensus 8 ~iiIgIaG~SgSGKTTva~~l~~--~~~~~ 35 (218)
T COG0572 8 VIIIGIAGGSGSGKTTVAKELSE--QLGVE 35 (218)
T ss_pred eEEEEEeCCCCCCHHHHHHHHHH--HhCcC
Confidence 47899999999999999999987 45444
No 369
>PRK12678 transcription termination factor Rho; Provisional
Probab=94.99 E-value=0.07 Score=57.94 Aligned_cols=101 Identities=14% Similarity=0.154 Sum_probs=54.3
Q ss_pred HHHHHHH-cCCceEEEEEcCCCCcHHHHHHHHhccccccc-cCCCcEEEEEeCCCC-CHHHHHHHHHHhcCCCCCCCCCh
Q 042541 177 ELKMELF-KDGRQFIVVSAPGGYGKTTLVQRLCKDDQVQG-KFKDDIFYVTVSKNP-NVKAIVQKVLHHKGYPVPEFQTD 253 (695)
Q Consensus 177 ~l~~~L~-~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~-~f~~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~ 253 (695)
++++.|. -+...-.+|+|++|+|||||++.+++ .+.. +-++.++.+-|.+.. .+.++.+.+-..+-....+....
T Consensus 405 RvIDll~PIGkGQR~LIvgpp~aGKTtLL~~IAn--~i~~n~~~~~~ivvLIgERpeEVtdm~rsVkgeVVasT~D~p~~ 482 (672)
T PRK12678 405 RVIDLIMPIGKGQRGLIVSPPKAGKTTILQNIAN--AITTNNPECHLMVVLVDERPEEVTDMQRSVKGEVIASTFDRPPS 482 (672)
T ss_pred eeeeeecccccCCEeEEeCCCCCCHHHHHHHHHH--HHhhcCCCeEEEEEEEeCchhhHHHHHHhccceEEEECCCCCHH
Confidence 3444444 33457789999999999999999998 3322 334434555566554 33334333311111111111111
Q ss_pred H-----HHHHHHHHHHHhcCCCcEEEEEeCCC
Q 042541 254 E-----AAINDLERFFKQMRIEAILLVLDDVW 280 (695)
Q Consensus 254 ~-----~~~~~l~~~~~~l~~~~~LlVlDdv~ 280 (695)
. ...-.+.+.+.. .++.+||++|++-
T Consensus 483 ~~~~~a~~ai~~Ae~fre-~G~dVlillDSlT 513 (672)
T PRK12678 483 DHTTVAELAIERAKRLVE-LGKDVVVLLDSIT 513 (672)
T ss_pred HHHHHHHHHHHHHHHHHH-cCCCEEEEEeCch
Confidence 1 111122222211 6899999999984
No 370
>PRK03839 putative kinase; Provisional
Probab=94.99 E-value=0.018 Score=54.31 Aligned_cols=21 Identities=33% Similarity=0.553 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 042541 189 FIVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 189 vv~I~G~gGiGKTtLa~~~~~ 209 (695)
.|.|.|++|+||||+++.+++
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~ 22 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAE 22 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 488999999999999999987
No 371
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=94.98 E-value=0.025 Score=52.57 Aligned_cols=22 Identities=36% Similarity=0.594 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 042541 188 QFIVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 188 ~vv~I~G~gGiGKTtLa~~~~~ 209 (695)
+.|.+.|.+|+||||+|++++.
T Consensus 2 pLiIlTGyPgsGKTtfakeLak 23 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAK 23 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHH
Confidence 4678999999999999999987
No 372
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=94.98 E-value=0.11 Score=48.44 Aligned_cols=23 Identities=26% Similarity=0.475 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhc
Q 042541 187 RQFIVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 187 ~~vv~I~G~gGiGKTtLa~~~~~ 209 (695)
..+++|+|+.|.|||||.+.++.
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G 50 (173)
T cd03246 28 GESLAIIGPSGSGKSTLARLILG 50 (173)
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 46899999999999999999986
No 373
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.97 E-value=0.0061 Score=59.66 Aligned_cols=85 Identities=14% Similarity=0.183 Sum_probs=46.7
Q ss_pred CCceEEEEEEcc--CccccCChhhcCCCCCcEEEEcccCCCCcccCcccccccCCCCcEEEeccCCCC--Ccc-cccccc
Q 042541 549 GPEVKVVVLNIR--TKKYVLPDFLQKMDELKVLIVTNYGFSPAELNNFRVLSALSKLKKIRLEHVSLP--NSL-ATVRMN 623 (695)
Q Consensus 549 ~~~l~~L~l~~~--~~~~~~p~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~--~lp-~i~~l~ 623 (695)
++.++-+.|.+| +....+...+.+|+.|++|+++.|.+.+. +..+| -.+.+|+.|-|.|+.++ .+. .+..++
T Consensus 70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~-I~~lp--~p~~nl~~lVLNgT~L~w~~~~s~l~~lP 146 (418)
T KOG2982|consen 70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSD-IKSLP--LPLKNLRVLVLNGTGLSWTQSTSSLDDLP 146 (418)
T ss_pred hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCc-cccCc--ccccceEEEEEcCCCCChhhhhhhhhcch
Confidence 344555555555 23334445566777777777777666422 11211 23456777777777665 233 455566
Q ss_pred cccEEeeccccCC
Q 042541 624 HLQKVSLVMCNVG 636 (695)
Q Consensus 624 ~L~~L~l~~~~i~ 636 (695)
.++.|.++.|++.
T Consensus 147 ~vtelHmS~N~~r 159 (418)
T KOG2982|consen 147 KVTELHMSDNSLR 159 (418)
T ss_pred hhhhhhhccchhh
Confidence 6666666655433
No 374
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.97 E-value=0.011 Score=34.04 Aligned_cols=16 Identities=19% Similarity=0.156 Sum_probs=7.4
Q ss_pred ccEEeeccccCCcccc
Q 042541 625 LQKVSLVMCNVGQVFR 640 (695)
Q Consensus 625 L~~L~l~~~~i~~~~~ 640 (695)
|++|+|++|.++.+|+
T Consensus 2 L~~Ldls~n~l~~ip~ 17 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPS 17 (22)
T ss_dssp ESEEEETSSEESEEGT
T ss_pred ccEEECCCCcCEeCCh
Confidence 4445555544444333
No 375
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.96 E-value=0.15 Score=53.13 Aligned_cols=88 Identities=16% Similarity=0.131 Sum_probs=52.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCCCC-CHHHHHHHHHHhcCCCCCCCCChHHHHHHHHHHHH
Q 042541 187 RQFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSKNP-NVKAIVQKVLHHKGYPVPEFQTDEAAINDLERFFK 265 (695)
Q Consensus 187 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~ 265 (695)
.+++.|+|+.|+||||++..++.. .... ...+.+++..... ...+-++...+.++.+.....+.. .+...++
T Consensus 206 ~~ii~lvGptGvGKTTt~akLA~~--l~~~-g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~----dL~~al~ 278 (407)
T PRK12726 206 HRIISLIGQTGVGKTTTLVKLGWQ--LLKQ-NRTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPA----ELEEAVQ 278 (407)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH--HHHc-CCeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHH----HHHHHHH
Confidence 589999999999999999888763 2221 1236677775432 334455666666665432222222 2333333
Q ss_pred hcC--CCcEEEEEeCCCC
Q 042541 266 QMR--IEAILLVLDDVWP 281 (695)
Q Consensus 266 ~l~--~~~~LlVlDdv~~ 281 (695)
.++ +..=++++|-...
T Consensus 279 ~l~~~~~~D~VLIDTAGr 296 (407)
T PRK12726 279 YMTYVNCVDHILIDTVGR 296 (407)
T ss_pred HHHhcCCCCEEEEECCCC
Confidence 332 3456788888754
No 376
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=94.96 E-value=0.039 Score=54.22 Aligned_cols=48 Identities=25% Similarity=0.608 Sum_probs=31.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCCCCCHHHHHHH
Q 042541 187 RQFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSKNPNVKAIVQK 238 (695)
Q Consensus 187 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~~~~~~~~~~~ 238 (695)
..++.|.|.+|+|||+|+.++... ..+. +...++|++..+.. ..+.+.
T Consensus 19 gs~~li~G~~GsGKT~l~~q~l~~-~~~~-~ge~vlyvs~ee~~--~~l~~~ 66 (226)
T PF06745_consen 19 GSVVLISGPPGSGKTTLALQFLYN-GLKN-FGEKVLYVSFEEPP--EELIEN 66 (226)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHH-HHHH-HT--EEEEESSS-H--HHHHHH
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHH-hhhh-cCCcEEEEEecCCH--HHHHHH
Confidence 589999999999999999887652 2222 12237798886643 444444
No 377
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=94.95 E-value=0.061 Score=55.55 Aligned_cols=37 Identities=19% Similarity=0.232 Sum_probs=25.2
Q ss_pred EEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCC
Q 042541 190 IVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSK 228 (695)
Q Consensus 190 v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~ 228 (695)
+++.|++|+||||+++.+.+.......+ .+.+++..+
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~~l~~~~g~--~v~~~~~Dd 38 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSATLRRERGW--AVAVITYDD 38 (340)
T ss_pred eEEECCCCCCHHHHHHHHHHHHHhccCC--eEEEEcccc
Confidence 6789999999999999998732212222 255666544
No 378
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=94.95 E-value=0.18 Score=57.54 Aligned_cols=162 Identities=12% Similarity=0.108 Sum_probs=83.8
Q ss_pred CCCCCcchHHHHHHHHH---cC---------CceEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCCCCCHHH
Q 042541 167 ISPGLDVPLKELKMELF---KD---------GRQFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSKNPNVKA 234 (695)
Q Consensus 167 ~~vGr~~~~~~l~~~L~---~~---------~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~~~~~~~ 234 (695)
.+.|.+...+++.+.+. .+ -.+-|.|+|++|+|||++|+.++. ..... .+.++.++
T Consensus 153 di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~--~~~~~----f~~is~~~------ 220 (644)
T PRK10733 153 DVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAG--EAKVP----FFTISGSD------ 220 (644)
T ss_pred HHcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHH--HcCCC----EEEEehHH------
Confidence 45676666555554432 11 134489999999999999999987 22222 22333221
Q ss_pred HHHHHHHhcCCCCCCCCChHHHHHHHHHHH-HhcCCCcEEEEEeCCCCCC-----------h---HHHhhh----ccC--
Q 042541 235 IVQKVLHHKGYPVPEFQTDEAAINDLERFF-KQMRIEAILLVLDDVWPGS-----------E---SLLQKL----GFQ-- 293 (695)
Q Consensus 235 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~-~~l~~~~~LlVlDdv~~~~-----------~---~~~~~l----~~~-- 293 (695)
+.. .... . ....++..+ ......+++|++|+++... . ..+..+ ...
T Consensus 221 ~~~----~~~g------~---~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~ 287 (644)
T PRK10733 221 FVE----MFVG------V---GASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEG 287 (644)
T ss_pred hHH----hhhc------c---cHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccC
Confidence 111 1000 0 112233333 2234568999999985431 0 112222 111
Q ss_pred CCCCEEEEEcCCCC------C---CCCCeEecCCCChHHHHHHHHHhccCCCCCCCCCchHHHHHHHHhcCCc
Q 042541 294 LPDYKILVTSRSEF------P---QFGSVHYLKPLTYEAARTLFLHSANLQDGNSYIPDENIVSKILRACKGC 357 (695)
Q Consensus 294 ~~gs~iivTtR~~~------~---~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~G~ 357 (695)
..+.-+|.||.... . .....+.++..+.++-.+++..+.......... ....+++.+.|.
T Consensus 288 ~~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~~l~~~~----d~~~la~~t~G~ 356 (644)
T PRK10733 288 NEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDI----DAAIIARGTPGF 356 (644)
T ss_pred CCCeeEEEecCChhhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhcCCCCCcC----CHHHHHhhCCCC
Confidence 12334444665541 1 233477888888888888888766433221111 134567777663
No 379
>PRK04040 adenylate kinase; Provisional
Probab=94.95 E-value=0.02 Score=54.20 Aligned_cols=23 Identities=30% Similarity=0.496 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhc
Q 042541 187 RQFIVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 187 ~~vv~I~G~gGiGKTtLa~~~~~ 209 (695)
..+|+|+|++|+||||+++.+..
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~ 24 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALE 24 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHH
Confidence 36899999999999999999987
No 380
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=94.94 E-value=0.13 Score=50.46 Aligned_cols=40 Identities=25% Similarity=0.451 Sum_probs=28.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCCC
Q 042541 187 RQFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSKN 229 (695)
Q Consensus 187 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~~ 229 (695)
..++.|.|.+|+|||||+.++... -.+ . ...++|++....
T Consensus 20 G~~~~i~G~~G~GKT~l~~~~~~~-~~~-~-g~~~~~is~e~~ 59 (229)
T TIGR03881 20 GFFVAVTGEPGTGKTIFCLHFAYK-GLR-D-GDPVIYVTTEES 59 (229)
T ss_pred CeEEEEECCCCCChHHHHHHHHHH-HHh-c-CCeEEEEEccCC
Confidence 579999999999999999887652 122 2 223778887543
No 381
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=94.93 E-value=0.19 Score=57.84 Aligned_cols=106 Identities=14% Similarity=0.239 Sum_probs=64.5
Q ss_pred CCCCCCcchHHHHHHHHHc------C--CceEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCCCCCHHHHHH
Q 042541 166 VISPGLDVPLKELKMELFK------D--GRQFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSKNPNVKAIVQ 237 (695)
Q Consensus 166 ~~~vGr~~~~~~l~~~L~~------~--~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~~~~~~~~~~ 237 (695)
..++|-++.+..|.+.+.. . ......+.|+.|+|||.||++++. -+-+..+. .+-++.++. ..
T Consensus 562 ~~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~--~~Fgse~~-~IriDmse~------~e 632 (898)
T KOG1051|consen 562 ERVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAE--YVFGSEEN-FIRLDMSEF------QE 632 (898)
T ss_pred hhccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHH--HHcCCccc-eEEechhhh------hh
Confidence 4568888888888887762 1 245677999999999999999987 45444444 334444432 11
Q ss_pred HHHHhcCCCCCCCCChHHHHHHHHHHHHhcCCCcE-EEEEeCCCCCChHH
Q 042541 238 KVLHHKGYPVPEFQTDEAAINDLERFFKQMRIEAI-LLVLDDVWPGSESL 286 (695)
Q Consensus 238 ~i~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~~~-LlVlDdv~~~~~~~ 286 (695)
...+.+..+..... +...+|. +.++.++| +|+||||...+..+
T Consensus 633 --vskligsp~gyvG~-e~gg~Lt---eavrrrP~sVVLfdeIEkAh~~v 676 (898)
T KOG1051|consen 633 --VSKLIGSPPGYVGK-EEGGQLT---EAVKRRPYSVVLFEEIEKAHPDV 676 (898)
T ss_pred --hhhccCCCcccccc-hhHHHHH---HHHhcCCceEEEEechhhcCHHH
Confidence 33333333322221 2222333 44555554 77799998887653
No 382
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=94.89 E-value=0.0062 Score=56.65 Aligned_cols=42 Identities=21% Similarity=0.436 Sum_probs=30.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcccccc-ccCCCcEEEEEeCCCCC
Q 042541 187 RQFIVVSAPGGYGKTTLVQRLCKDDQVQ-GKFKDDIFYVTVSKNPN 231 (695)
Q Consensus 187 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~-~~f~~~~~wv~~~~~~~ 231 (695)
..++.+.|+.|+|||.||+.+.+ .+. +.... .+-++.+....
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~--~l~~~~~~~-~~~~d~s~~~~ 45 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAE--LLFVGSERP-LIRIDMSEYSE 45 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHH--HHT-SSCCE-EEEEEGGGHCS
T ss_pred EEEEEEECCCCCCHHHHHHHHHH--HhccCCccc-hHHHhhhcccc
Confidence 46788999999999999999987 333 33333 55666665444
No 383
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=94.88 E-value=0.24 Score=45.70 Aligned_cols=116 Identities=21% Similarity=0.174 Sum_probs=60.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcccccc-ccCCCcEEEEEeCC---CCCHHHHHHHHHH---hcCCCCC-CCCChHHHHH
Q 042541 187 RQFIVVSAPGGYGKTTLVQRLCKDDQVQ-GKFKDDIFYVTVSK---NPNVKAIVQKVLH---HKGYPVP-EFQTDEAAIN 258 (695)
Q Consensus 187 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~-~~f~~~~~wv~~~~---~~~~~~~~~~i~~---~l~~~~~-~~~~~~~~~~ 258 (695)
...|-|++..|.||||.|..++- +.. ..+. ++.+.+-. .......+..+.- +.+.... ...+......
T Consensus 5 ~Gli~v~~g~GkGKtt~a~g~a~--ra~~~g~~--v~ivQFlKg~~~~GE~~~l~~~~~~~~~~g~g~~~~~~~~~~~~~ 80 (173)
T TIGR00708 5 RGIIIVHTGNGKGKTTAAFGMAL--RALGHGKK--VGVIQFIKGAWPNGERAAFEPHGVEFQVMGTGFTWETQNREADTA 80 (173)
T ss_pred ccEEEEECCCCCChHHHHHHHHH--HHHHCCCe--EEEEEEecCCcccChHHHHHhcCcEEEECCCCCeecCCCcHHHHH
Confidence 46888999999999999977765 332 2222 44443322 2344444444300 0111100 0011112112
Q ss_pred HHHHHH----Hhc-CCCcEEEEEeCCCCC-------ChHHHhhhccCCCCCEEEEEcCCC
Q 042541 259 DLERFF----KQM-RIEAILLVLDDVWPG-------SESLLQKLGFQLPDYKILVTSRSE 306 (695)
Q Consensus 259 ~l~~~~----~~l-~~~~~LlVlDdv~~~-------~~~~~~~l~~~~~gs~iivTtR~~ 306 (695)
...+.+ +.+ .+.--+||||.+-.. .+.+.+.+....++..||+|-|+.
T Consensus 81 ~~~~~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~ 140 (173)
T TIGR00708 81 IAKAAWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGC 140 (173)
T ss_pred HHHHHHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCC
Confidence 222222 333 345569999997321 123455555555578999999977
No 384
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=94.88 E-value=0.026 Score=53.47 Aligned_cols=21 Identities=19% Similarity=0.449 Sum_probs=18.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 042541 189 FIVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 189 vv~I~G~gGiGKTtLa~~~~~ 209 (695)
++.|+|+.|.||||+.+.+.-
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~ 21 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGL 21 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHH
Confidence 478999999999999998874
No 385
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=94.87 E-value=0.26 Score=45.63 Aligned_cols=24 Identities=25% Similarity=0.505 Sum_probs=21.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcc
Q 042541 187 RQFIVVSAPGGYGKTTLVQRLCKD 210 (695)
Q Consensus 187 ~~vv~I~G~gGiGKTtLa~~~~~~ 210 (695)
..+++|+|+.|.|||||++.+..-
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~G~ 50 (166)
T cd03223 27 GDRLLITGPSGTGKSSLFRALAGL 50 (166)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 478999999999999999999863
No 386
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=94.85 E-value=0.097 Score=48.36 Aligned_cols=23 Identities=26% Similarity=0.359 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhc
Q 042541 187 RQFIVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 187 ~~vv~I~G~gGiGKTtLa~~~~~ 209 (695)
..+++|.|+.|.|||||.+.++.
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~i~G 48 (163)
T cd03216 26 GEVHALLGENGAGKSTLMKILSG 48 (163)
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 47899999999999999999986
No 387
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=94.83 E-value=0.21 Score=50.02 Aligned_cols=39 Identities=21% Similarity=0.382 Sum_probs=29.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCC
Q 042541 187 RQFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSK 228 (695)
Q Consensus 187 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~ 228 (695)
..++.|.|.+|+|||++|.+++.. ..+. ...+++++...
T Consensus 36 gs~~lI~G~pGtGKT~l~~qf~~~-~a~~--Ge~vlyis~Ee 74 (259)
T TIGR03878 36 YSVINITGVSDTGKSLMVEQFAVT-QASR--GNPVLFVTVES 74 (259)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHH-HHhC--CCcEEEEEecC
Confidence 578999999999999999987652 2222 33477998874
No 388
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=94.83 E-value=1.4 Score=44.62 Aligned_cols=61 Identities=10% Similarity=0.051 Sum_probs=40.2
Q ss_pred CCCcEEEEEeCCCCCChH----HHhhhccCCCCCEEEEEcCCCCCCC------CCeEecCCCChHHHHHHHH
Q 042541 268 RIEAILLVLDDVWPGSES----LLQKLGFQLPDYKILVTSRSEFPQF------GSVHYLKPLTYEAARTLFL 329 (695)
Q Consensus 268 ~~~~~LlVlDdv~~~~~~----~~~~l~~~~~gs~iivTtR~~~~~~------~~~~~l~~L~~~ea~~Lf~ 329 (695)
.+++-++|+||++..... +++.+-.+.+++.+|++|.+...-. ...+.+.+ +.++..+.+.
T Consensus 102 ~~~~kV~II~~ad~m~~~AaNaLLKtLEEPp~~t~~iL~t~~~~~lLpTI~SRcq~i~f~~-~~~~~~~~L~ 172 (290)
T PRK07276 102 EGKQQVFIIKDADKMHVNAANSLLKVIEEPQSEIYIFLLTNDENKVLPTIKSRTQIFHFPK-NEAYLIQLLE 172 (290)
T ss_pred cCCcEEEEeehhhhcCHHHHHHHHHHhcCCCCCeEEEEEECChhhCchHHHHcceeeeCCC-cHHHHHHHHH
Confidence 467789999999877644 5666666666788888777663211 12566766 6666666664
No 389
>TIGR01039 atpD ATP synthase, F1 beta subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit.
Probab=94.83 E-value=0.078 Score=56.62 Aligned_cols=95 Identities=14% Similarity=0.199 Sum_probs=56.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCCCC-CHHHHHHHHHHhcCCC-------CCCCCChH--
Q 042541 185 DGRQFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSKNP-NVKAIVQKVLHHKGYP-------VPEFQTDE-- 254 (695)
Q Consensus 185 ~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~-- 254 (695)
...+-++|.|.+|+|||||+..+... ........++++-+++.. ...+++.++...-... ..+.+...
T Consensus 141 g~GQr~~If~~~G~GKt~L~~~~~~~--~~~~~~~v~V~alIGER~rEv~ef~~~~~~~~~l~rtvvV~atsd~p~~~R~ 218 (461)
T TIGR01039 141 AKGGKIGLFGGAGVGKTVLIQELINN--IAKEHGGYSVFAGVGERTREGNDLYHEMKESGVIDKTALVYGQMNEPPGARM 218 (461)
T ss_pred ccCCEEEeecCCCCChHHHHHHHHHH--HHhcCCCeEEEEEecCCchHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHH
Confidence 34578999999999999999998763 222213336677776543 5677777776542111 11111111
Q ss_pred ---HHHHHHHHHHHhcCCCcEEEEEeCCCC
Q 042541 255 ---AAINDLERFFKQMRIEAILLVLDDVWP 281 (695)
Q Consensus 255 ---~~~~~l~~~~~~l~~~~~LlVlDdv~~ 281 (695)
...-.+.+.++.-+++++||++||+-.
T Consensus 219 ~a~~~a~tiAEyfrd~~G~~VLll~DslTR 248 (461)
T TIGR01039 219 RVALTGLTMAEYFRDEQGQDVLLFIDNIFR 248 (461)
T ss_pred HHHHHHHHHHHHHHHhcCCeeEEEecchhH
Confidence 112233444433357899999999843
No 390
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=94.82 E-value=0.057 Score=56.78 Aligned_cols=45 Identities=27% Similarity=0.364 Sum_probs=37.0
Q ss_pred CCCCCCCcchHHHHHHHHHcC--------------CceEEEEEcCCCCcHHHHHHHHhc
Q 042541 165 PVISPGLDVPLKELKMELFKD--------------GRQFIVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 165 ~~~~vGr~~~~~~l~~~L~~~--------------~~~vv~I~G~gGiGKTtLa~~~~~ 209 (695)
..+++|.++.++.+..++... ..+.|.++|++|+|||+||+.+..
T Consensus 14 d~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk 72 (443)
T PRK05201 14 DKYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAK 72 (443)
T ss_pred ccccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHH
Confidence 456899999999888777530 146789999999999999999987
No 391
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=94.81 E-value=0.12 Score=55.29 Aligned_cols=90 Identities=22% Similarity=0.352 Sum_probs=49.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCCCCCHHHHHHHHHHhc-----CCC-CCCCCCh-----HH
Q 042541 187 RQFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSKNPNVKAIVQKVLHHK-----GYP-VPEFQTD-----EA 255 (695)
Q Consensus 187 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~~~~~~~~~~~i~~~l-----~~~-~~~~~~~-----~~ 255 (695)
...++|+|..|+|||||++.+.... . .+.+++++.-....++.++....+... +.- ..+.+.. ..
T Consensus 165 Gqri~I~G~SGsGKTTLL~~Ia~l~---~-pd~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~qsd~~~~~r~~~~~ 240 (450)
T PRK06002 165 GQRIGIFAGSGVGKSTLLAMLARAD---A-FDTVVIALVGERGREVREFLEDTLADNLKKAVAVVATSDESPMMRRLAPL 240 (450)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC---C-CCeeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEcCCCCHHHHHHHHH
Confidence 4689999999999999999887521 1 122344444333445554444333322 110 0111111 11
Q ss_pred HHHHHHHHHHhcCCCcEEEEEeCCCC
Q 042541 256 AINDLERFFKQMRIEAILLVLDDVWP 281 (695)
Q Consensus 256 ~~~~l~~~~~~l~~~~~LlVlDdv~~ 281 (695)
..-.+.+.+.. +++.+|+++||+-.
T Consensus 241 ~a~~iAEyfrd-~G~~Vll~~DslTr 265 (450)
T PRK06002 241 TATAIAEYFRD-RGENVLLIVDSVTR 265 (450)
T ss_pred HHHHHHHHHHH-cCCCEEEeccchHH
Confidence 12233444422 59999999999843
No 392
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=94.81 E-value=0.75 Score=52.85 Aligned_cols=44 Identities=16% Similarity=0.098 Sum_probs=35.0
Q ss_pred CCCCCCcchHHHHHHHHH--cCCceEEEEEcCCCCcHHHHHHHHhc
Q 042541 166 VISPGLDVPLKELKMELF--KDGRQFIVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 166 ~~~vGr~~~~~~l~~~L~--~~~~~vv~I~G~gGiGKTtLa~~~~~ 209 (695)
+.++|....+.++.+.+. .....-|.|+|..|+||+++|+.+.+
T Consensus 325 ~~l~g~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~~A~~ih~ 370 (638)
T PRK11388 325 DHMPQDSPQMRRLIHFGRQAAKSSFPVLLCGEEGVGKALLAQAIHN 370 (638)
T ss_pred cceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCcCHHHHHHHHHH
Confidence 357899988888877766 22234478999999999999999986
No 393
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=94.80 E-value=0.018 Score=55.25 Aligned_cols=21 Identities=29% Similarity=0.502 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 042541 189 FIVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 189 vv~I~G~gGiGKTtLa~~~~~ 209 (695)
+|+|.|++|+|||||++.+..
T Consensus 1 iigi~G~~GsGKSTl~~~l~~ 21 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIE 21 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999876
No 394
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=94.77 E-value=0.11 Score=55.16 Aligned_cols=90 Identities=18% Similarity=0.260 Sum_probs=53.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCCCC-CHHHHHHHHHHhcCCC-------CCCCCCh----
Q 042541 186 GRQFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSKNP-NVKAIVQKVLHHKGYP-------VPEFQTD---- 253 (695)
Q Consensus 186 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~~~-~~~~~~~~i~~~l~~~-------~~~~~~~---- 253 (695)
....++|+|..|+|||||++.+... .. .+. ++.+-+++.. ...++...++..-+.. ..+.+..
T Consensus 161 ~GqrigI~G~sG~GKSTLL~~I~~~--~~--~dv-~Vi~lIGER~rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~~ 235 (444)
T PRK08972 161 KGQRMGLFAGSGVGKSVLLGMMTRG--TT--ADV-IVVGLVGERGREVKEFIEEILGEEGRARSVVVAAPADTSPLMRLK 235 (444)
T ss_pred CCCEEEEECCCCCChhHHHHHhccC--CC--CCE-EEEEEEcCChHHHHHHHHHhhccCCcccEEEEEECCCCCHHHHHH
Confidence 3578999999999999999998862 11 133 4445566544 4566666665442211 1111111
Q ss_pred -HHHHHHHHHHHHhcCCCcEEEEEeCCCC
Q 042541 254 -EAAINDLERFFKQMRIEAILLVLDDVWP 281 (695)
Q Consensus 254 -~~~~~~l~~~~~~l~~~~~LlVlDdv~~ 281 (695)
....-.+.+.+.. +++++|+++||+-.
T Consensus 236 a~~~A~tiAEyfrd-~G~~VLl~~DslTR 263 (444)
T PRK08972 236 GCETATTIAEYFRD-QGLNVLLLMDSLTR 263 (444)
T ss_pred HHHHHHHHHHHHHH-cCCCEEEEEcChHH
Confidence 1112234444432 69999999999843
No 395
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=94.77 E-value=0.12 Score=50.97 Aligned_cols=48 Identities=17% Similarity=0.398 Sum_probs=34.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCCCCCHHHHHHHH
Q 042541 187 RQFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSKNPNVKAIVQKV 239 (695)
Q Consensus 187 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~~~~~~~~~~~i 239 (695)
..++.|+|.+|+|||+|+.++... ..+. ...++|++..+. ..++.+++
T Consensus 25 g~~~~i~G~~GsGKt~l~~~~~~~-~~~~--g~~~~y~~~e~~--~~~~~~~~ 72 (234)
T PRK06067 25 PSLILIEGDHGTGKSVLSQQFVYG-ALKQ--GKKVYVITTENT--SKSYLKQM 72 (234)
T ss_pred CcEEEEECCCCCChHHHHHHHHHH-HHhC--CCEEEEEEcCCC--HHHHHHHH
Confidence 589999999999999999998652 2232 234779998754 44555543
No 396
>PRK06217 hypothetical protein; Validated
Probab=94.76 E-value=0.046 Score=51.65 Aligned_cols=22 Identities=32% Similarity=0.400 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 042541 189 FIVVSAPGGYGKTTLVQRLCKD 210 (695)
Q Consensus 189 vv~I~G~gGiGKTtLa~~~~~~ 210 (695)
.|.|.|.+|+||||+|+.+...
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~ 24 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAER 24 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999873
No 397
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=94.76 E-value=0.049 Score=55.57 Aligned_cols=85 Identities=19% Similarity=0.199 Sum_probs=49.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCCCCCHHHHHHHHHHhcCCCCCC-----CCChHHHHHHHH
Q 042541 187 RQFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSKNPNVKAIVQKVLHHKGYPVPE-----FQTDEAAINDLE 261 (695)
Q Consensus 187 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~~~~~l~ 261 (695)
.+++-|+|+.|+||||||..+.. ..+.. +..++|++....++.. .++++|.+... ....++....+.
T Consensus 53 G~ivEi~G~~ssGKttLaL~~ia--~~q~~-g~~~a~ID~e~~ld~~-----~a~~lGvdl~rllv~~P~~~E~al~~~e 124 (322)
T PF00154_consen 53 GRIVEIYGPESSGKTTLALHAIA--EAQKQ-GGICAFIDAEHALDPE-----YAESLGVDLDRLLVVQPDTGEQALWIAE 124 (322)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHH--HHHHT-T-EEEEEESSS---HH-----HHHHTT--GGGEEEEE-SSHHHHHHHHH
T ss_pred CceEEEeCCCCCchhhhHHHHHH--hhhcc-cceeEEecCcccchhh-----HHHhcCccccceEEecCCcHHHHHHHHH
Confidence 57999999999999999988876 33333 3347899998876654 33444432211 113444444444
Q ss_pred HHHHhcCCCcEEEEEeCCCC
Q 042541 262 RFFKQMRIEAILLVLDDVWP 281 (695)
Q Consensus 262 ~~~~~l~~~~~LlVlDdv~~ 281 (695)
.+++ .+.--++|+|.|-.
T Consensus 125 ~lir--sg~~~lVVvDSv~a 142 (322)
T PF00154_consen 125 QLIR--SGAVDLVVVDSVAA 142 (322)
T ss_dssp HHHH--TTSESEEEEE-CTT
T ss_pred HHhh--cccccEEEEecCcc
Confidence 4443 34455899999843
No 398
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=94.73 E-value=0.024 Score=53.42 Aligned_cols=22 Identities=36% Similarity=0.533 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 042541 188 QFIVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 188 ~vv~I~G~gGiGKTtLa~~~~~ 209 (695)
.+++|+|++|+|||||++.+..
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~ 23 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARA 23 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999876
No 399
>PRK00625 shikimate kinase; Provisional
Probab=94.72 E-value=0.022 Score=53.04 Aligned_cols=21 Identities=29% Similarity=0.301 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 042541 189 FIVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 189 vv~I~G~gGiGKTtLa~~~~~ 209 (695)
.|.|+||+|+||||+++.+.+
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~ 22 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAK 22 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 488999999999999999977
No 400
>PF13245 AAA_19: Part of AAA domain
Probab=94.71 E-value=0.047 Score=43.01 Aligned_cols=24 Identities=42% Similarity=0.718 Sum_probs=18.0
Q ss_pred CceEEEEEcCCCCcHHHHH-HHHhc
Q 042541 186 GRQFIVVSAPGGYGKTTLV-QRLCK 209 (695)
Q Consensus 186 ~~~vv~I~G~gGiGKTtLa-~~~~~ 209 (695)
+.+++.|.|++|.|||+++ ..+.+
T Consensus 9 ~~~~~vv~g~pGtGKT~~~~~~i~~ 33 (76)
T PF13245_consen 9 GSPLFVVQGPPGTGKTTTLAARIAE 33 (76)
T ss_pred hCCeEEEECCCCCCHHHHHHHHHHH
Confidence 4578889999999999555 44443
No 401
>PRK00131 aroK shikimate kinase; Reviewed
Probab=94.70 E-value=0.026 Score=52.80 Aligned_cols=23 Identities=35% Similarity=0.306 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhc
Q 042541 187 RQFIVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 187 ~~vv~I~G~gGiGKTtLa~~~~~ 209 (695)
...|.|+|++|+||||+|+.++.
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~ 26 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAK 26 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHH
Confidence 46899999999999999999987
No 402
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=94.69 E-value=0.31 Score=48.86 Aligned_cols=35 Identities=26% Similarity=0.323 Sum_probs=26.9
Q ss_pred HHHHHHHHH-cCCceEEEEEcCCCCcHHHHHHHHhc
Q 042541 175 LKELKMELF-KDGRQFIVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 175 ~~~l~~~L~-~~~~~vv~I~G~gGiGKTtLa~~~~~ 209 (695)
.+.+...|. ..+..-++|+|+.|+|||||.+.+..
T Consensus 98 ~~~~l~~l~~~~~~~~~~i~g~~g~GKttl~~~l~~ 133 (270)
T TIGR02858 98 ADKLLPYLVRNNRVLNTLIISPPQCGKTTLLRDLAR 133 (270)
T ss_pred HHHHHHHHHhCCCeeEEEEEcCCCCCHHHHHHHHhC
Confidence 344444444 34457899999999999999999987
No 403
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=94.68 E-value=0.053 Score=55.44 Aligned_cols=45 Identities=18% Similarity=0.290 Sum_probs=39.3
Q ss_pred CCCCCCCcchHHHHHHHHH------cCCceEEEEEcCCCCcHHHHHHHHhc
Q 042541 165 PVISPGLDVPLKELKMELF------KDGRQFIVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 165 ~~~~vGr~~~~~~l~~~L~------~~~~~vv~I~G~gGiGKTtLa~~~~~ 209 (695)
...|+|.++.++++++.+. +..-+++.++|+.|.|||||+..+-+
T Consensus 60 ~~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~ 110 (358)
T PF08298_consen 60 EDEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKR 110 (358)
T ss_pred cccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHH
Confidence 4578999999999999987 23468999999999999999988865
No 404
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.64 E-value=0.075 Score=56.10 Aligned_cols=58 Identities=19% Similarity=0.268 Sum_probs=34.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCCCC-CHHHHHHHHHHhcCCC
Q 042541 187 RQFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSKNP-NVKAIVQKVLHHKGYP 246 (695)
Q Consensus 187 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~~~-~~~~~~~~i~~~l~~~ 246 (695)
..++.|+|++|+||||++..++........+ .+..++..... .....+....+.++.+
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~--~V~Lit~Dt~R~aA~eQLk~yAe~lgvp 281 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGK--SVSLYTTDNYRIAAIEQLKRYADTMGMP 281 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCC--eEEEecccchhhhHHHHHHHHHHhcCCC
Confidence 4689999999999999999888632222222 24444443211 2334444555555543
No 405
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=94.63 E-value=0.021 Score=53.71 Aligned_cols=21 Identities=33% Similarity=0.393 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 042541 189 FIVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 189 vv~I~G~gGiGKTtLa~~~~~ 209 (695)
+|+|.|.+|+||||+|+.+..
T Consensus 1 ii~i~G~sgsGKTtla~~l~~ 21 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQR 21 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999987
No 406
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=94.60 E-value=0.089 Score=55.81 Aligned_cols=23 Identities=30% Similarity=0.472 Sum_probs=20.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhc
Q 042541 187 RQFIVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 187 ~~vv~I~G~gGiGKTtLa~~~~~ 209 (695)
...++|+|++|.||||||+.+.-
T Consensus 362 G~~lgIIGPSgSGKSTLaR~lvG 384 (580)
T COG4618 362 GEALGIIGPSGSGKSTLARLLVG 384 (580)
T ss_pred CceEEEECCCCccHHHHHHHHHc
Confidence 46899999999999999998753
No 407
>COG0055 AtpD F0F1-type ATP synthase, beta subunit [Energy production and conversion]
Probab=94.60 E-value=0.072 Score=54.11 Aligned_cols=93 Identities=15% Similarity=0.211 Sum_probs=58.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCCC-CCHHHHHHHHHHhcCCC----------CCCCCC--h
Q 042541 187 RQFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSKN-PNVKAIVQKVLHHKGYP----------VPEFQT--D 253 (695)
Q Consensus 187 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~~-~~~~~~~~~i~~~l~~~----------~~~~~~--~ 253 (695)
..-|++.|-+|+|||.|.+++.+ .+........++.-+++. ..-.++..++.+.--.+ .++... .
T Consensus 147 GgKiGLFGGAGVGKTVl~~ELI~--Nia~~h~g~SVFaGvGERtREGndLy~Em~es~vl~ktalv~gQMNEpPGaR~RV 224 (468)
T COG0055 147 GGKIGLFGGAGVGKTVLIQELIN--NIAKEHGGYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARMRV 224 (468)
T ss_pred CceeeeeccCCccceeeHHHHHH--HHHHHcCCeEEEEeccccccchHHHHHHHHhcCCCCceeEEEeecCCCCcceeee
Confidence 46789999999999999999988 454444443557777654 45678888887762211 111111 1
Q ss_pred HHHHHHHHHHHHhcCCCcEEEEEeCCCC
Q 042541 254 EAAINDLERFFKQMRIEAILLVLDDVWP 281 (695)
Q Consensus 254 ~~~~~~l~~~~~~l~~~~~LlVlDdv~~ 281 (695)
.-..-.+.+.++.-.++.+|+.+||+..
T Consensus 225 altGlT~AEyfRD~~gqdVLlFIDNIfR 252 (468)
T COG0055 225 ALTGLTMAEYFRDEEGQDVLLFIDNIFR 252 (468)
T ss_pred hhhhhhHHHHhhcccCCeEEEEehhhhH
Confidence 1111123444544458899999999854
No 408
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=94.60 E-value=0.039 Score=55.46 Aligned_cols=53 Identities=15% Similarity=0.331 Sum_probs=38.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCCCCCHHHHHHHHHHhcC
Q 042541 186 GRQFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSKNPNVKAIVQKVLHHKG 244 (695)
Q Consensus 186 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~~~~~~~~~~~i~~~l~ 244 (695)
..+++.|+|.+|+|||+++.++.. +...+... ++||+..+. ..++.+...+ ++
T Consensus 22 ~g~~~lI~G~pGsGKT~f~~qfl~--~~~~~ge~-vlyvs~~e~--~~~l~~~~~~-~g 74 (260)
T COG0467 22 RGSVVLITGPPGTGKTIFALQFLY--EGAREGEP-VLYVSTEES--PEELLENARS-FG 74 (260)
T ss_pred CCcEEEEEcCCCCcHHHHHHHHHH--HHHhcCCc-EEEEEecCC--HHHHHHHHHH-cC
Confidence 468999999999999999999887 45555554 789998874 3444444433 44
No 409
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=94.58 E-value=0.096 Score=54.18 Aligned_cols=86 Identities=17% Similarity=0.301 Sum_probs=53.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCCCCCHHHHHHHHHHhcCCCCCCC-CChHHHHHHHHHHHH
Q 042541 187 RQFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSKNPNVKAIVQKVLHHKGYPVPEF-QTDEAAINDLERFFK 265 (695)
Q Consensus 187 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~-~~~~~~~~~l~~~~~ 265 (695)
..+|.|-|.+|||||||..++.. ++...- .++||+-.+...... --.+.++.+.... --.+...+.+.+.++
T Consensus 93 Gs~iLIgGdPGIGKSTLLLQva~--~lA~~~--~vLYVsGEES~~Qik---lRA~RL~~~~~~l~l~aEt~~e~I~~~l~ 165 (456)
T COG1066 93 GSVILIGGDPGIGKSTLLLQVAA--RLAKRG--KVLYVSGEESLQQIK---LRADRLGLPTNNLYLLAETNLEDIIAELE 165 (456)
T ss_pred ccEEEEccCCCCCHHHHHHHHHH--HHHhcC--cEEEEeCCcCHHHHH---HHHHHhCCCccceEEehhcCHHHHHHHHH
Confidence 47999999999999999999988 555444 377877665432222 2234455433221 112233344444443
Q ss_pred hcCCCcEEEEEeCCCC
Q 042541 266 QMRIEAILLVLDDVWP 281 (695)
Q Consensus 266 ~l~~~~~LlVlDdv~~ 281 (695)
..++-++|+|-+..
T Consensus 166 --~~~p~lvVIDSIQT 179 (456)
T COG1066 166 --QEKPDLVVIDSIQT 179 (456)
T ss_pred --hcCCCEEEEeccce
Confidence 36789999999743
No 410
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=94.56 E-value=0.086 Score=52.89 Aligned_cols=41 Identities=29% Similarity=0.358 Sum_probs=29.5
Q ss_pred CCCcchHHHHHHHHHcCCceEEEEEcCCCCcHHHHHHHHhc
Q 042541 169 PGLDVPLKELKMELFKDGRQFIVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 169 vGr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~~~~ 209 (695)
.|...+..+....+......+|.|.|+.|+||||++..+.+
T Consensus 62 lg~~~~~~~~l~~~~~~~~GlilisG~tGSGKTT~l~all~ 102 (264)
T cd01129 62 LGLKPENLEIFRKLLEKPHGIILVTGPTGSGKTTTLYSALS 102 (264)
T ss_pred cCCCHHHHHHHHHHHhcCCCEEEEECCCCCcHHHHHHHHHh
Confidence 45554444444444444457899999999999999998876
No 411
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=94.55 E-value=0.05 Score=49.57 Aligned_cols=35 Identities=29% Similarity=0.358 Sum_probs=29.1
Q ss_pred chHHHHHHHHHcCCceEEEEEcCCCCcHHHHHHHHhcc
Q 042541 173 VPLKELKMELFKDGRQFIVVSAPGGYGKTTLVQRLCKD 210 (695)
Q Consensus 173 ~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~~~~~ 210 (695)
+.+++|.+.|.. ++++++|..|+|||||+..+..+
T Consensus 24 ~g~~~l~~~l~~---k~~vl~G~SGvGKSSLiN~L~~~ 58 (161)
T PF03193_consen 24 EGIEELKELLKG---KTSVLLGQSGVGKSSLINALLPE 58 (161)
T ss_dssp TTHHHHHHHHTT---SEEEEECSTTSSHHHHHHHHHTS
T ss_pred cCHHHHHHHhcC---CEEEEECCCCCCHHHHHHHHHhh
Confidence 456777777754 79999999999999999999874
No 412
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=94.54 E-value=0.031 Score=52.53 Aligned_cols=21 Identities=33% Similarity=0.687 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 042541 189 FIVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 189 vv~I~G~gGiGKTtLa~~~~~ 209 (695)
+|+|.|.+|+||||||+.+..
T Consensus 1 ii~i~G~sgsGKttla~~l~~ 21 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSN 21 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999987
No 413
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=94.51 E-value=0.068 Score=56.55 Aligned_cols=36 Identities=17% Similarity=0.296 Sum_probs=28.5
Q ss_pred HHHHHHHHHcCCceEEEEEcCCCCcHHHHHHHHhcc
Q 042541 175 LKELKMELFKDGRQFIVVSAPGGYGKTTLVQRLCKD 210 (695)
Q Consensus 175 ~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~~~~~ 210 (695)
.+.+++.+.......+.|.|.||.|||+|.+.+.+.
T Consensus 10 ~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~~~i~~~ 45 (364)
T PF05970_consen 10 FDTVIEAIENEEGLNFFVTGPAGTGKSFLIKAIIDY 45 (364)
T ss_pred HHHHHHHHHccCCcEEEEEcCCCCChhHHHHHHHHH
Confidence 344455555566788999999999999999998873
No 414
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=94.50 E-value=0.028 Score=52.69 Aligned_cols=22 Identities=18% Similarity=0.427 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 042541 188 QFIVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 188 ~vv~I~G~gGiGKTtLa~~~~~ 209 (695)
++|.+.|++|+||||+|+.+..
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~ 24 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQS 24 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 6899999999999999999876
No 415
>PHA02774 E1; Provisional
Probab=94.49 E-value=0.12 Score=56.34 Aligned_cols=36 Identities=28% Similarity=0.286 Sum_probs=27.3
Q ss_pred hHHHHHHHHHc-CCceEEEEEcCCCCcHHHHHHHHhc
Q 042541 174 PLKELKMELFK-DGRQFIVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 174 ~~~~l~~~L~~-~~~~vv~I~G~gGiGKTtLa~~~~~ 209 (695)
-+..+..+|.. ++...+.|+|++|.|||.+|..+.+
T Consensus 420 fl~~lk~~l~~~PKknciv~~GPP~TGKS~fa~sL~~ 456 (613)
T PHA02774 420 FLTALKDFLKGIPKKNCLVIYGPPDTGKSMFCMSLIK 456 (613)
T ss_pred HHHHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHH
Confidence 34555555543 3346899999999999999999887
No 416
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=94.49 E-value=0.098 Score=52.02 Aligned_cols=91 Identities=16% Similarity=0.193 Sum_probs=53.3
Q ss_pred CceEEEEEcCCCCcHHHHH-HHHhccccccccCCCcEEEEEeCCCC-CHHHHHHHHHHhcCC-------CCCCCCChH--
Q 042541 186 GRQFIVVSAPGGYGKTTLV-QRLCKDDQVQGKFKDDIFYVTVSKNP-NVKAIVQKVLHHKGY-------PVPEFQTDE-- 254 (695)
Q Consensus 186 ~~~vv~I~G~gGiGKTtLa-~~~~~~~~~~~~f~~~~~wv~~~~~~-~~~~~~~~i~~~l~~-------~~~~~~~~~-- 254 (695)
..+-++|.|..|+|||+|| ..+.+ .. .-+..++++-+.+.. ...++.+++...-.. ...+.+...
T Consensus 68 rGQr~~Ifg~~g~GKt~L~l~~i~~--~~--~~~v~~V~~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~ 143 (274)
T cd01132 68 RGQRELIIGDRQTGKTAIAIDTIIN--QK--GKKVYCIYVAIGQKASTVAQVVKTLEEHGAMEYTIVVAATASDPAPLQY 143 (274)
T ss_pred cCCEEEeeCCCCCCccHHHHHHHHH--hc--CCCeEEEEEecccchHHHHHHHHHHHhcCccceeEEEEeCCCCchhHHH
Confidence 3477999999999999996 55554 21 223323567777654 566777777654211 111111111
Q ss_pred ---HHHHHHHHHHHhcCCCcEEEEEeCCCC
Q 042541 255 ---AAINDLERFFKQMRIEAILLVLDDVWP 281 (695)
Q Consensus 255 ---~~~~~l~~~~~~l~~~~~LlVlDdv~~ 281 (695)
...-.+.+.+.. +++.+|+++||+-.
T Consensus 144 ~a~~~a~aiAE~fr~-~G~~Vlvl~DslTr 172 (274)
T cd01132 144 LAPYTGCAMGEYFMD-NGKHALIIYDDLSK 172 (274)
T ss_pred HHHHHHHHHHHHHHH-CCCCEEEEEcChHH
Confidence 112334455533 58999999999843
No 417
>PRK05439 pantothenate kinase; Provisional
Probab=94.49 E-value=0.21 Score=50.96 Aligned_cols=46 Identities=15% Similarity=-0.012 Sum_probs=30.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcccccccc-CCCcEEEEEeCCCCCH
Q 042541 185 DGRQFIVVSAPGGYGKTTLVQRLCKDDQVQGK-FKDDIFYVTVSKNPNV 232 (695)
Q Consensus 185 ~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~-f~~~~~wv~~~~~~~~ 232 (695)
+.+-+|+|.|.+|+||||+|+.+.. ..... ....+.-++..+-...
T Consensus 84 ~~~~iIgIaG~~gsGKSTla~~L~~--~l~~~~~~~~v~vi~~DdFy~~ 130 (311)
T PRK05439 84 KVPFIIGIAGSVAVGKSTTARLLQA--LLSRWPEHPKVELVTTDGFLYP 130 (311)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH--HHHhhCCCCceEEEeccccccC
Confidence 3467999999999999999998876 33322 1223555666554433
No 418
>PRK04328 hypothetical protein; Provisional
Probab=94.47 E-value=0.19 Score=50.12 Aligned_cols=40 Identities=23% Similarity=0.357 Sum_probs=30.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCCC
Q 042541 187 RQFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSKN 229 (695)
Q Consensus 187 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~~ 229 (695)
..++.|.|.+|+|||+||.++... ..+.. . .++|++..+.
T Consensus 23 gs~ili~G~pGsGKT~l~~~fl~~-~~~~g-e-~~lyis~ee~ 62 (249)
T PRK04328 23 RNVVLLSGGPGTGKSIFSQQFLWN-GLQMG-E-PGVYVALEEH 62 (249)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHH-HHhcC-C-cEEEEEeeCC
Confidence 589999999999999999887653 23332 2 3679988774
No 419
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=94.47 E-value=0.12 Score=54.46 Aligned_cols=86 Identities=16% Similarity=0.308 Sum_probs=48.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCCCCCHHHHHHHHHHhcCCCCCCCC-ChHHHHHHHHHHHH
Q 042541 187 RQFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSKNPNVKAIVQKVLHHKGYPVPEFQ-TDEAAINDLERFFK 265 (695)
Q Consensus 187 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~-~~~~~~~~l~~~~~ 265 (695)
..++.|.|.+|+|||||+.+++.. ....- ..++|++..+. ...+. .-.+.++....... ..+...+.+.+.++
T Consensus 82 GslvLI~G~pG~GKStLllq~a~~--~a~~g-~~VlYvs~EEs--~~qi~-~Ra~rlg~~~~~l~l~~e~~le~I~~~i~ 155 (372)
T cd01121 82 GSVILIGGDPGIGKSTLLLQVAAR--LAKRG-GKVLYVSGEES--PEQIK-LRADRLGISTENLYLLAETNLEDILASIE 155 (372)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHH--HHhcC-CeEEEEECCcC--HHHHH-HHHHHcCCCcccEEEEccCcHHHHHHHHH
Confidence 479999999999999999988863 32222 23778877543 33332 22344543322110 01112233333332
Q ss_pred hcCCCcEEEEEeCCC
Q 042541 266 QMRIEAILLVLDDVW 280 (695)
Q Consensus 266 ~l~~~~~LlVlDdv~ 280 (695)
..+.-++|+|.+.
T Consensus 156 --~~~~~lVVIDSIq 168 (372)
T cd01121 156 --ELKPDLVIIDSIQ 168 (372)
T ss_pred --hcCCcEEEEcchH
Confidence 2456788999873
No 420
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=94.47 E-value=0.018 Score=49.87 Aligned_cols=27 Identities=33% Similarity=0.536 Sum_probs=18.6
Q ss_pred EEEEcCCCCcHHHHHHHHhccccccccCC
Q 042541 190 IVVSAPGGYGKTTLVQRLCKDDQVQGKFK 218 (695)
Q Consensus 190 v~I~G~gGiGKTtLa~~~~~~~~~~~~f~ 218 (695)
|.|+|.+|+||||+|+.++. .+...|.
T Consensus 2 vLleg~PG~GKT~la~~lA~--~~~~~f~ 28 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALAR--SLGLSFK 28 (131)
T ss_dssp EEEES---HHHHHHHHHHHH--HTT--EE
T ss_pred EeeECCCccHHHHHHHHHHH--HcCCcee
Confidence 67999999999999999998 5555554
No 421
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=94.46 E-value=1.2 Score=45.06 Aligned_cols=112 Identities=10% Similarity=-0.016 Sum_probs=61.4
Q ss_pred HHHHHHHHHcCC-ceEEEEEcCCCCcHHHHHHHHhccccc-----------cccCCCcEEEEEeCCCCCHHHHHHHHHHh
Q 042541 175 LKELKMELFKDG-RQFIVVSAPGGYGKTTLVQRLCKDDQV-----------QGKFKDDIFYVTVSKNPNVKAIVQKVLHH 242 (695)
Q Consensus 175 ~~~l~~~L~~~~-~~vv~I~G~gGiGKTtLa~~~~~~~~~-----------~~~f~~~~~wv~~~~~~~~~~~~~~i~~~ 242 (695)
-+++...+..+. ..-..++|+.|+||+++|..++..--- ....+. +.|+.-....
T Consensus 6 ~~~L~~~i~~~rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD-~~~i~p~~~~------------ 72 (290)
T PRK05917 6 WEALIQRVRDQKVPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPD-IHEFSPQGKG------------ 72 (290)
T ss_pred HHHHHHHHHcCCcCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCC-EEEEecCCCC------------
Confidence 456667776655 456779999999999999887762100 011122 2222110000
Q ss_pred cCCCCCCCCChHHHHHHHHHHH--HhcCCCcEEEEEeCCCCCChH----HHhhhccCCCCCEEEEEcCCC
Q 042541 243 KGYPVPEFQTDEAAINDLERFF--KQMRIEAILLVLDDVWPGSES----LLQKLGFQLPDYKILVTSRSE 306 (695)
Q Consensus 243 l~~~~~~~~~~~~~~~~l~~~~--~~l~~~~~LlVlDdv~~~~~~----~~~~l~~~~~gs~iivTtR~~ 306 (695)
..-..+....+.+.+ ....++.-++|+|+++..... +++.+-...+++.+|++|.+.
T Consensus 73 -------~~I~idqiR~l~~~~~~~p~e~~~kv~ii~~ad~mt~~AaNaLLK~LEEPp~~~~fiL~~~~~ 135 (290)
T PRK05917 73 -------RLHSIETPRAIKKQIWIHPYESPYKIYIIHEADRMTLDAISAFLKVLEDPPQHGVIILTSAKP 135 (290)
T ss_pred -------CcCcHHHHHHHHHHHhhCccCCCceEEEEechhhcCHHHHHHHHHHhhcCCCCeEEEEEeCCh
Confidence 000111122222222 122466779999999877643 556666666677777777665
No 422
>PRK00889 adenylylsulfate kinase; Provisional
Probab=94.45 E-value=0.036 Score=51.98 Aligned_cols=24 Identities=25% Similarity=0.331 Sum_probs=21.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhc
Q 042541 186 GRQFIVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 186 ~~~vv~I~G~gGiGKTtLa~~~~~ 209 (695)
...+|+|+|++|+||||+|+.+..
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~ 26 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAE 26 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 356999999999999999999987
No 423
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=94.45 E-value=0.061 Score=52.12 Aligned_cols=20 Identities=35% Similarity=0.625 Sum_probs=18.4
Q ss_pred EEEEcCCCCcHHHHHHHHhc
Q 042541 190 IVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 190 v~I~G~gGiGKTtLa~~~~~ 209 (695)
|.|.|++|+||||+|+.+..
T Consensus 2 I~i~G~pGsGKsT~a~~La~ 21 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAE 21 (210)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78999999999999999875
No 424
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=94.45 E-value=0.03 Score=52.72 Aligned_cols=22 Identities=50% Similarity=0.801 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 042541 188 QFIVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 188 ~vv~I~G~gGiGKTtLa~~~~~ 209 (695)
++|+|+|+.|+|||||++.+..
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~ 23 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLE 23 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHc
Confidence 5799999999999999999987
No 425
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=94.44 E-value=0.29 Score=48.57 Aligned_cols=52 Identities=13% Similarity=0.341 Sum_probs=36.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCCCCCHHHHHHHHHHh
Q 042541 187 RQFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSKNPNVKAIVQKVLHH 242 (695)
Q Consensus 187 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~~~~~~~~~~~i~~~ 242 (695)
..++.|.|.+|+|||+++.+++.+.-.. ....++|++... +..++...++..
T Consensus 13 G~l~lI~G~~G~GKT~~~~~~~~~~~~~--~g~~vly~s~E~--~~~~~~~r~~~~ 64 (242)
T cd00984 13 GDLIIIAARPSMGKTAFALNIAENIAKK--QGKPVLFFSLEM--SKEQLLQRLLAS 64 (242)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHh--CCCceEEEeCCC--CHHHHHHHHHHH
Confidence 4689999999999999999887632222 133477887776 456666666544
No 426
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=94.43 E-value=0.072 Score=55.61 Aligned_cols=64 Identities=14% Similarity=0.225 Sum_probs=48.1
Q ss_pred CCCCcchHHHHHHHHHcCCceEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCCCCCHHHHHHHH
Q 042541 168 SPGLDVPLKELKMELFKDGRQFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSKNPNVKAIVQKV 239 (695)
Q Consensus 168 ~vGr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~~~~~~~~~~~i 239 (695)
++|.++.+..+...+..+ +-+.+.|++|+|||+||+.++. .+. ...+++.+.......++....
T Consensus 26 ~~g~~~~~~~~l~a~~~~--~~vll~G~PG~gKT~la~~lA~--~l~----~~~~~i~~t~~l~p~d~~G~~ 89 (329)
T COG0714 26 VVGDEEVIELALLALLAG--GHVLLEGPPGVGKTLLARALAR--ALG----LPFVRIQCTPDLLPSDLLGTY 89 (329)
T ss_pred eeccHHHHHHHHHHHHcC--CCEEEECCCCccHHHHHHHHHH--HhC----CCeEEEecCCCCCHHHhcCch
Confidence 688888887777777654 4588999999999999999987 333 235688888877777665433
No 427
>PRK14528 adenylate kinase; Provisional
Probab=94.41 E-value=0.075 Score=50.34 Aligned_cols=22 Identities=36% Similarity=0.616 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 042541 188 QFIVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 188 ~vv~I~G~gGiGKTtLa~~~~~ 209 (695)
+.|.|.|++|+||||+|+.+..
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~ 23 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCE 23 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4588999999999999999876
No 428
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.40 E-value=0.24 Score=52.83 Aligned_cols=87 Identities=16% Similarity=0.210 Sum_probs=45.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCCC-CCHHHHHHHHHHhcCCCCCCCCChHHHHHHHHHHHH
Q 042541 187 RQFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSKN-PNVKAIVQKVLHHKGYPVPEFQTDEAAINDLERFFK 265 (695)
Q Consensus 187 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~ 265 (695)
..+|+++|+.|+||||++..++........... +..+..... ....+-+....+.++.+........+ +...+.
T Consensus 191 g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~-v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~d----l~~al~ 265 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAKLAARAVIRHGADK-VALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIAD----LQLMLH 265 (420)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCe-EEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHH----HHHHHH
Confidence 479999999999999999877752111111122 434443321 23333355555666654432222222 222233
Q ss_pred hcCCCcEEEEEeCC
Q 042541 266 QMRIEAILLVLDDV 279 (695)
Q Consensus 266 ~l~~~~~LlVlDdv 279 (695)
.+.++ -++++|-.
T Consensus 266 ~l~~~-d~VLIDTa 278 (420)
T PRK14721 266 ELRGK-HMVLIDTV 278 (420)
T ss_pred HhcCC-CEEEecCC
Confidence 34443 45666765
No 429
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=94.40 E-value=0.14 Score=48.82 Aligned_cols=23 Identities=43% Similarity=0.455 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcc
Q 042541 188 QFIVVSAPGGYGKTTLVQRLCKD 210 (695)
Q Consensus 188 ~vv~I~G~gGiGKTtLa~~~~~~ 210 (695)
..|+|.|..|+||||+++.+.+.
T Consensus 4 ~~IvieG~~GsGKsT~~~~L~~~ 26 (195)
T TIGR00041 4 MFIVIEGIDGAGKTTQANLLKKL 26 (195)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999999873
No 430
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=94.38 E-value=0.099 Score=55.87 Aligned_cols=94 Identities=10% Similarity=0.142 Sum_probs=56.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCCCC-CHHHHHHHHHHhcCCC-------CCCCCChH---
Q 042541 186 GRQFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSKNP-NVKAIVQKVLHHKGYP-------VPEFQTDE--- 254 (695)
Q Consensus 186 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~--- 254 (695)
..+-++|.|.+|+|||+|+..+..... +.+-+. ++++-+++.. ...++..++...-... ..+.+...
T Consensus 137 kGQr~~Ifg~~G~GKt~l~~~~~~~~~-~~~~~v-~V~~~iGeR~rEv~e~~~~~~~~~~l~rtvvv~~ts~~~~~~r~~ 214 (449)
T TIGR03305 137 RGGKAGLFGGAGVGKTVLLTEMIHNMV-GQHQGV-SIFCGIGERCREGEELYREMKEAGVLDNTVMVFGQMNEPPGARFR 214 (449)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHH-hcCCCE-EEEEEeccCcHHHHHHHHHHhhccccceEEEEEeCCCCCHHHHHH
Confidence 457899999999999999999877422 222344 6688787654 5566777766542111 11111111
Q ss_pred --HHHHHHHHHHHhcCCCcEEEEEeCCCC
Q 042541 255 --AAINDLERFFKQMRIEAILLVLDDVWP 281 (695)
Q Consensus 255 --~~~~~l~~~~~~l~~~~~LlVlDdv~~ 281 (695)
...-.+.+.++.-+++++|+++||+-.
T Consensus 215 ~~~~a~tiAEyfrd~~G~~VLl~~DslTR 243 (449)
T TIGR03305 215 VGHTALTMAEYFRDDEKQDVLLLIDNIFR 243 (449)
T ss_pred HHHHHHHHHHHHHHhcCCceEEEecChHH
Confidence 112223344432257999999999843
No 431
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=94.38 E-value=0.099 Score=48.51 Aligned_cols=90 Identities=16% Similarity=0.190 Sum_probs=52.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCCCCCHHHHHHHHHH-hcCCCCC--CCCChHHHHHHHHHHH
Q 042541 188 QFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSKNPNVKAIVQKVLH-HKGYPVP--EFQTDEAAINDLERFF 264 (695)
Q Consensus 188 ~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~~~~~~~~~~~i~~-~l~~~~~--~~~~~~~~~~~l~~~~ 264 (695)
..|.|-|+.|+|||+|..+.+. .+++.|+..++=.++-...+...+.+..-. ..+.... ...+.......+.++.
T Consensus 14 ~~i~v~Gp~GSGKTaLie~~~~--~L~~~~~~aVI~~Di~t~~Da~~l~~~~g~~i~~v~TG~~CH~da~m~~~ai~~l~ 91 (202)
T COG0378 14 LRIGVGGPPGSGKTALIEKTLR--ALKDEYKIAVITGDIYTKEDADRLRKLPGEPIIGVETGKGCHLDASMNLEAIEELV 91 (202)
T ss_pred EEEEecCCCCcCHHHHHHHHHH--HHHhhCCeEEEeceeechhhHHHHHhCCCCeeEEeccCCccCCcHHHHHHHHHHHh
Confidence 6899999999999999999988 677778865555444444444444442100 0111111 1224444444555544
Q ss_pred HhcCCCcEEEEEeCCC
Q 042541 265 KQMRIEAILLVLDDVW 280 (695)
Q Consensus 265 ~~l~~~~~LlVlDdv~ 280 (695)
..... -=||++.++.
T Consensus 92 ~~~~~-~Dll~iEs~G 106 (202)
T COG0378 92 LDFPD-LDLLFIESVG 106 (202)
T ss_pred hcCCc-CCEEEEecCc
Confidence 32222 3577788875
No 432
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=94.38 E-value=0.055 Score=51.72 Aligned_cols=44 Identities=27% Similarity=0.367 Sum_probs=35.3
Q ss_pred CCCCCcchHHHHHHHHH-------------cCCceEEEEEcCCCCcHHHHHHHHhcc
Q 042541 167 ISPGLDVPLKELKMELF-------------KDGRQFIVVSAPGGYGKTTLVQRLCKD 210 (695)
Q Consensus 167 ~~vGr~~~~~~l~~~L~-------------~~~~~vv~I~G~gGiGKTtLa~~~~~~ 210 (695)
.+-|.+...+++.+... -+.++-|.++|++|.|||-||++|+++
T Consensus 156 diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~ 212 (408)
T KOG0727|consen 156 DIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANH 212 (408)
T ss_pred ccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhc
Confidence 44568888888877765 133677899999999999999999984
No 433
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=94.37 E-value=0.027 Score=51.22 Aligned_cols=21 Identities=38% Similarity=0.526 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 042541 189 FIVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 189 vv~I~G~gGiGKTtLa~~~~~ 209 (695)
++.|+|++|+||||+|+.+..
T Consensus 1 li~l~G~~GsGKST~a~~l~~ 21 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAE 21 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHh
Confidence 478999999999999999876
No 434
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=94.34 E-value=0.034 Score=49.83 Aligned_cols=38 Identities=21% Similarity=0.393 Sum_probs=25.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcccccc-ccCCCcEEEEEeCC
Q 042541 188 QFIVVSAPGGYGKTTLVQRLCKDDQVQ-GKFKDDIFYVTVSK 228 (695)
Q Consensus 188 ~vv~I~G~gGiGKTtLa~~~~~~~~~~-~~f~~~~~wv~~~~ 228 (695)
++|.|+|..|+|||||++.+.+ ... ..+.. .+..+...
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~--~l~~~g~~v-~~ik~~~~ 39 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLIN--ELKRRGYRV-AVIKHTDH 39 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHH--HHHHTT--E-EEEEE-ST
T ss_pred CEEEEECCCCCCHHHHHHHHHH--HHhHcCCce-EEEEEccC
Confidence 5899999999999999999998 443 33443 33555444
No 435
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=94.34 E-value=0.043 Score=53.04 Aligned_cols=30 Identities=33% Similarity=0.424 Sum_probs=26.0
Q ss_pred HHHHcCCceEEEEEcCCCCcHHHHHHHHhc
Q 042541 180 MELFKDGRQFIVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 180 ~~L~~~~~~vv~I~G~gGiGKTtLa~~~~~ 209 (695)
+.+...++++|+++|..|+|||||..++.+
T Consensus 15 ~~~~~~~~~~i~~~G~~gsGKTTli~~l~~ 44 (207)
T TIGR00073 15 ERLDKHGLVVLNFMSSPGSGKTTLIEKLID 44 (207)
T ss_pred HHhhhcCcEEEEEECCCCCCHHHHHHHHHH
Confidence 344566799999999999999999999887
No 436
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=94.34 E-value=0.052 Score=51.17 Aligned_cols=36 Identities=25% Similarity=0.306 Sum_probs=27.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEe
Q 042541 187 RQFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTV 226 (695)
Q Consensus 187 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~ 226 (695)
..|++|+|++|+|||||.+-+-.- +.++.+.+|+.-
T Consensus 28 Gevv~iiGpSGSGKSTlLRclN~L----E~~~~G~I~i~g 63 (240)
T COG1126 28 GEVVVIIGPSGSGKSTLLRCLNGL----EEPDSGSITVDG 63 (240)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC----cCCCCceEEECC
Confidence 479999999999999999988642 334445667643
No 437
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=94.33 E-value=0.054 Score=52.86 Aligned_cols=113 Identities=15% Similarity=0.209 Sum_probs=56.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCCCCCHHHHHHHHHHhcCCCCCC---CCChHHHHHHHHH
Q 042541 186 GRQFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSKNPNVKAIVQKVLHHKGYPVPE---FQTDEAAINDLER 262 (695)
Q Consensus 186 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~l~~ 262 (695)
+.+++.|+|+.|.||||+.+.+..- .+-. ..+. +|..... ...+...++..++..... .........++..
T Consensus 29 ~~~~~~l~G~n~~GKstll~~i~~~-~~la--~~g~-~vpa~~~--~~~~~~~il~~~~l~d~~~~~lS~~~~e~~~~a~ 102 (222)
T cd03285 29 KSRFLIITGPNMGGKSTYIRQIGVI-VLMA--QIGC-FVPCDSA--DIPIVDCILARVGASDSQLKGVSTFMAEMLETAA 102 (222)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHH-HHHH--HhCC-CcCcccE--EEeccceeEeeeccccchhcCcChHHHHHHHHHH
Confidence 4679999999999999999886532 1111 1100 2222110 011223333333322111 1122233334444
Q ss_pred HHHhcCCCcEEEEEeCCCC---CChH------HHhhhccCCCCCEEEEEcCCC
Q 042541 263 FFKQMRIEAILLVLDDVWP---GSES------LLQKLGFQLPDYKILVTSRSE 306 (695)
Q Consensus 263 ~~~~l~~~~~LlVlDdv~~---~~~~------~~~~l~~~~~gs~iivTtR~~ 306 (695)
.++.+ ..+-|+++|..-. ..+. .++.+.. ..|+.+|+||-..
T Consensus 103 il~~~-~~~sLvLLDEp~~gT~~lD~~~~~~~il~~l~~-~~~~~vlisTH~~ 153 (222)
T cd03285 103 ILKSA-TENSLIIIDELGRGTSTYDGFGLAWAIAEYIAT-QIKCFCLFATHFH 153 (222)
T ss_pred HHHhC-CCCeEEEEecCcCCCChHHHHHHHHHHHHHHHh-cCCCeEEEEechH
Confidence 44444 5688999999832 2221 1233322 3467888888743
No 438
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=94.33 E-value=0.17 Score=53.93 Aligned_cols=90 Identities=17% Similarity=0.220 Sum_probs=52.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCCCC-CHHHHHHHHHHhcCCC-------CCCCCCh----
Q 042541 186 GRQFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSKNP-NVKAIVQKVLHHKGYP-------VPEFQTD---- 253 (695)
Q Consensus 186 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~~~-~~~~~~~~i~~~l~~~-------~~~~~~~---- 253 (695)
....++|+|..|+|||||++.+.+... .+. ++.+-+++.. ...++..+.+..-+.. ..+.+..
T Consensus 157 ~Gqri~I~G~sG~GKTtLL~~I~~~~~----~d~-~v~~~iGER~rEv~ef~~~~l~~~~l~rsvvv~atsd~~~~~r~~ 231 (442)
T PRK08927 157 RGQRMGIFAGSGVGKSVLLSMLARNAD----ADV-SVIGLIGERGREVQEFLQDDLGPEGLARSVVVVATSDEPALMRRQ 231 (442)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccC----CCE-EEEEEEecCcHHHHHHHHHHhhccCceeEEEEEECCCCCHHHHHH
Confidence 457899999999999999999886321 123 4456666544 4455555554432211 1111111
Q ss_pred -HHHHHHHHHHHHhcCCCcEEEEEeCCCC
Q 042541 254 -EAAINDLERFFKQMRIEAILLVLDDVWP 281 (695)
Q Consensus 254 -~~~~~~l~~~~~~l~~~~~LlVlDdv~~ 281 (695)
....-.+.+.+.. +++++|+++||+-.
T Consensus 232 a~~~a~tiAEyfrd-~G~~Vll~~DslTr 259 (442)
T PRK08927 232 AAYLTLAIAEYFRD-QGKDVLCLMDSVTR 259 (442)
T ss_pred HHHHHHHHHHHHHH-CCCcEEEEEeCcHH
Confidence 1112223444422 59999999999843
No 439
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=94.33 E-value=0.062 Score=55.03 Aligned_cols=49 Identities=16% Similarity=0.316 Sum_probs=36.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCCCCCHHHHHHH
Q 042541 187 RQFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSKNPNVKAIVQK 238 (695)
Q Consensus 187 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~~~~~~~~~~~ 238 (695)
.+++.+.|.|||||||+|.+.+- ........ ++-|+.....+..+++..
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~--~lA~~g~k-vLlvStDPAhsL~d~f~~ 50 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAV--KLAESGKK-VLLVSTDPAHSLGDVFDL 50 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHH--HHHHcCCc-EEEEEeCCCCchHhhhcc
Confidence 47899999999999999988654 34444443 778888877777766654
No 440
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=94.30 E-value=0.14 Score=52.67 Aligned_cols=38 Identities=21% Similarity=0.326 Sum_probs=27.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEe
Q 042541 186 GRQFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTV 226 (695)
Q Consensus 186 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~ 226 (695)
...+++++|++|+||||++..++.. .... ...+..+..
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~--l~~~-g~~V~Li~~ 150 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHK--YKAQ-GKKVLLAAG 150 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH--HHhc-CCeEEEEec
Confidence 4689999999999999999998873 3322 223555554
No 441
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=94.29 E-value=0.033 Score=50.48 Aligned_cols=20 Identities=35% Similarity=0.549 Sum_probs=18.3
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 042541 189 FIVVSAPGGYGKTTLVQRLC 208 (695)
Q Consensus 189 vv~I~G~gGiGKTtLa~~~~ 208 (695)
.|.|.|.+|+||||+++.+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 58999999999999998875
No 442
>PRK13947 shikimate kinase; Provisional
Probab=94.27 E-value=0.031 Score=52.13 Aligned_cols=21 Identities=38% Similarity=0.384 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 042541 189 FIVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 189 vv~I~G~gGiGKTtLa~~~~~ 209 (695)
-|.|+|++|+||||+|+.+.+
T Consensus 3 ~I~l~G~~GsGKst~a~~La~ 23 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVAT 23 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHH
Confidence 488999999999999999987
No 443
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=94.26 E-value=0.034 Score=49.69 Aligned_cols=21 Identities=52% Similarity=0.903 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 042541 189 FIVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 189 vv~I~G~gGiGKTtLa~~~~~ 209 (695)
+|+|+|+.|+|||||++.+..
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~ 21 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLE 21 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHh
Confidence 378999999999999999987
No 444
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=94.25 E-value=0.039 Score=51.05 Aligned_cols=24 Identities=33% Similarity=0.454 Sum_probs=21.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhc
Q 042541 186 GRQFIVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 186 ~~~vv~I~G~gGiGKTtLa~~~~~ 209 (695)
..++++|+|..|+|||||++.+..
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~ 28 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIP 28 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHH
Confidence 357999999999999999999886
No 445
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=94.21 E-value=0.089 Score=50.62 Aligned_cols=22 Identities=18% Similarity=0.445 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 042541 188 QFIVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 188 ~vv~I~G~gGiGKTtLa~~~~~ 209 (695)
.+++|+|+.|.|||||.+.+..
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred eEEEEECCCCCccHHHHHHHHH
Confidence 7999999999999999999874
No 446
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=94.21 E-value=0.037 Score=53.14 Aligned_cols=23 Identities=26% Similarity=0.375 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhc
Q 042541 187 RQFIVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 187 ~~vv~I~G~gGiGKTtLa~~~~~ 209 (695)
..+++|+|.+|+|||||++.+.-
T Consensus 33 Ge~lgivGeSGsGKSTL~r~l~G 55 (252)
T COG1124 33 GETLGIVGESGSGKSTLARLLAG 55 (252)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhc
Confidence 47899999999999999999975
No 447
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=94.20 E-value=0.44 Score=53.43 Aligned_cols=25 Identities=28% Similarity=0.420 Sum_probs=21.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhc
Q 042541 185 DGRQFIVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 185 ~~~~vv~I~G~gGiGKTtLa~~~~~ 209 (695)
+....++|+|+.|+|||||++.+..
T Consensus 359 ~~G~~vaIvG~SGsGKSTLl~lL~g 383 (529)
T TIGR02868 359 PPGERVAILGPSGSGKSTLLMLLTG 383 (529)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhc
Confidence 3458899999999999999999864
No 448
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=94.20 E-value=0.051 Score=56.33 Aligned_cols=43 Identities=23% Similarity=0.207 Sum_probs=36.6
Q ss_pred CCCCCcchHHHHHHHHHcCCceEEEEEcCCCCcHHHHHHHHhc
Q 042541 167 ISPGLDVPLKELKMELFKDGRQFIVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 167 ~~vGr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~~~~ 209 (695)
.+||-+..+..+.-.+.++...-|.|.|..|+|||||++.+..
T Consensus 5 ~ivgq~~~~~al~~~~~~~~~g~vli~G~~G~gKttl~r~~~~ 47 (337)
T TIGR02030 5 AIVGQDEMKLALLLNVIDPKIGGVMVMGDRGTGKSTAVRALAA 47 (337)
T ss_pred ccccHHHHHHHHHHHhcCCCCCeEEEEcCCCCCHHHHHHHHHH
Confidence 4689888888887777777677788999999999999999875
No 449
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=94.19 E-value=0.073 Score=45.95 Aligned_cols=44 Identities=9% Similarity=0.064 Sum_probs=32.6
Q ss_pred CCCCCcchHHHHHHHHH----c---CCceEEEEEcCCCCcHHHHHHHHhcc
Q 042541 167 ISPGLDVPLKELKMELF----K---DGRQFIVVSAPGGYGKTTLVQRLCKD 210 (695)
Q Consensus 167 ~~vGr~~~~~~l~~~L~----~---~~~~vv~I~G~gGiGKTtLa~~~~~~ 210 (695)
.++|-.-..+.+...+. + .++-|++.+|.+|+|||.+++.+++.
T Consensus 26 ~l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~ 76 (127)
T PF06309_consen 26 NLFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEH 76 (127)
T ss_pred HccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHH
Confidence 46776666666666554 2 34678999999999999988887764
No 450
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=94.18 E-value=0.29 Score=50.29 Aligned_cols=90 Identities=17% Similarity=0.269 Sum_probs=51.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeC-CCCCHHHHHHHHHHhcCCC-------CCCCCChH---
Q 042541 186 GRQFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVS-KNPNVKAIVQKVLHHKGYP-------VPEFQTDE--- 254 (695)
Q Consensus 186 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~-~~~~~~~~~~~i~~~l~~~-------~~~~~~~~--- 254 (695)
....++|+|..|+|||||.+.+... .. -+. ....-+. +..+..++.......-+.. ..+.+...
T Consensus 68 ~Gqri~I~G~sG~GKTtLl~~Ia~~--~~--~~~-~vi~~iGer~~ev~~~~~~~~~~~~l~rtvvv~~t~d~~~~~r~~ 142 (326)
T cd01136 68 KGQRLGIFAGSGVGKSTLLGMIARG--TT--ADV-NVIALIGERGREVREFIEKDLGEEGLKRSVVVVATSDESPLLRVK 142 (326)
T ss_pred CCcEEEEECCCCCChHHHHHHHhCC--CC--CCE-EEEEEEecCCccHHHHHHHHHhcCccceEEEEEcCCCCCHHHHHH
Confidence 3478899999999999999988863 21 122 2234444 3345666666665543211 11111111
Q ss_pred --HHHHHHHHHHHhcCCCcEEEEEeCCCC
Q 042541 255 --AAINDLERFFKQMRIEAILLVLDDVWP 281 (695)
Q Consensus 255 --~~~~~l~~~~~~l~~~~~LlVlDdv~~ 281 (695)
...-.+.+.+.. +++.+|+++||+-.
T Consensus 143 ~~~~a~~~AEyfr~-~g~~Vll~~Dsltr 170 (326)
T cd01136 143 AAYTATAIAEYFRD-QGKDVLLLMDSLTR 170 (326)
T ss_pred HHHHHHHHHHHHHH-cCCCeEEEeccchH
Confidence 112223444422 59999999999843
No 451
>PF12780 AAA_8: P-loop containing dynein motor region D4; InterPro: IPR024317 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four (D1 - D4) correspond to the ATP binding sites with P-loop signatures described previously, and two (D5, D6) are modules in which the P loop has been lost in evolution. This particular entry represents the D4 ATP-binding domain of the motor [].; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=94.17 E-value=0.17 Score=50.62 Aligned_cols=94 Identities=18% Similarity=0.313 Sum_probs=51.0
Q ss_pred CCCcchHHHHHH---HHHcCCceEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCCCCCHHHHHHHHHHhcCC
Q 042541 169 PGLDVPLKELKM---ELFKDGRQFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSKNPNVKAIVQKVLHHKGY 245 (695)
Q Consensus 169 vGr~~~~~~l~~---~L~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~~~~~~~~~~~i~~~l~~ 245 (695)
|=.++.++.|.. .|..+ .+-..++|.||+||+|+++.++.- . .+ .++-+.+++.++..+.
T Consensus 11 Vlf~~ai~hi~ri~RvL~~~-~Gh~LLvG~~GsGr~sl~rLaa~i---~-~~--~~~~i~~~~~y~~~~f---------- 73 (268)
T PF12780_consen 11 VLFDEAIEHIARISRVLSQP-RGHALLVGVGGSGRQSLARLAAFI---C-GY--EVFQIEITKGYSIKDF---------- 73 (268)
T ss_dssp ---HHHHHHHHHHHHHHCST-TEEEEEECTTTSCHHHHHHHHHHH---T-TE--EEE-TTTSTTTHHHHH----------
T ss_pred eeHHHHHHHHHHHHHHHcCC-CCCeEEecCCCccHHHHHHHHHHH---h-cc--ceEEEEeeCCcCHHHH----------
Confidence 334555554443 34343 466679999999999999987752 1 11 1333334444443333
Q ss_pred CCCCCCChHHHHHHHHHHH--HhcCCCcEEEEEeCCCCCChHHHhhh
Q 042541 246 PVPEFQTDEAAINDLERFF--KQMRIEAILLVLDDVWPGSESLLQKL 290 (695)
Q Consensus 246 ~~~~~~~~~~~~~~l~~~~--~~l~~~~~LlVlDdv~~~~~~~~~~l 290 (695)
.+.|+..+ ..+++++..++++|-+-.++..++.+
T Consensus 74 -----------~~dLk~~~~~ag~~~~~~vfll~d~qi~~~~fLe~i 109 (268)
T PF12780_consen 74 -----------KEDLKKALQKAGIKGKPTVFLLTDSQIVDESFLEDI 109 (268)
T ss_dssp -----------HHHHHHHHHHHHCS-S-EEEEEECCCSSSCHHHHHH
T ss_pred -----------HHHHHHHHHHHhccCCCeEEEecCcccchHhHHHHH
Confidence 23344443 44578999999999765554444433
No 452
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=94.17 E-value=0.042 Score=50.61 Aligned_cols=24 Identities=50% Similarity=0.768 Sum_probs=21.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcc
Q 042541 187 RQFIVVSAPGGYGKTTLVQRLCKD 210 (695)
Q Consensus 187 ~~vv~I~G~gGiGKTtLa~~~~~~ 210 (695)
..++.|.|++|+|||||+++++.+
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~ 27 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLED 27 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhh
Confidence 468999999999999999999984
No 453
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=94.16 E-value=0.044 Score=46.09 Aligned_cols=22 Identities=27% Similarity=0.450 Sum_probs=19.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHh
Q 042541 187 RQFIVVSAPGGYGKTTLVQRLC 208 (695)
Q Consensus 187 ~~vv~I~G~gGiGKTtLa~~~~ 208 (695)
...++|+|++|+|||||++.+.
T Consensus 15 ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 15 KVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CEEEEEEcCCCCCHHHHHHHhh
Confidence 4789999999999999999875
No 454
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.16 E-value=0.24 Score=53.74 Aligned_cols=88 Identities=15% Similarity=0.182 Sum_probs=47.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCCC-CCHHHHHHHHHHhcCCCCCCCCChHHHHHHHHHHHH
Q 042541 187 RQFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSKN-PNVKAIVQKVLHHKGYPVPEFQTDEAAINDLERFFK 265 (695)
Q Consensus 187 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~ 265 (695)
.+|++++|+.|+||||++..++.....+..- ..+..+..... ....+-+....+.++.+........+. ...+.
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~-~kV~LI~~Dt~RigA~EQLr~~AeilGVpv~~~~~~~Dl----~~aL~ 330 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARCVMRHGA-SKVALLTTDSYRIGGHEQLRIYGKILGVPVHAVKDAADL----RLALS 330 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHHHhcCC-CeEEEEeCCccchhHHHHHHHHHHHhCCCeeccCCchhH----HHHHH
Confidence 3799999999999999999888632222111 12555554331 233344555556655443222122111 11223
Q ss_pred hcCCCcEEEEEeCCC
Q 042541 266 QMRIEAILLVLDDVW 280 (695)
Q Consensus 266 ~l~~~~~LlVlDdv~ 280 (695)
.+.++ -.+++|-..
T Consensus 331 ~L~d~-d~VLIDTaG 344 (484)
T PRK06995 331 ELRNK-HIVLIDTIG 344 (484)
T ss_pred hccCC-CeEEeCCCC
Confidence 44444 467777764
No 455
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.16 E-value=0.019 Score=33.03 Aligned_cols=21 Identities=14% Similarity=0.157 Sum_probs=15.3
Q ss_pred CCcEEEeccCCCCCcc-ccccc
Q 042541 602 KLKKIRLEHVSLPNSL-ATVRM 622 (695)
Q Consensus 602 ~L~~L~L~~~~l~~lp-~i~~l 622 (695)
+|++|+|++|+++.+| ++++|
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~l 22 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSNL 22 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT-
T ss_pred CccEEECCCCcCEeCChhhcCC
Confidence 4788888888888888 65543
No 456
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=94.16 E-value=0.032 Score=50.44 Aligned_cols=21 Identities=38% Similarity=0.710 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 042541 189 FIVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 189 vv~I~G~gGiGKTtLa~~~~~ 209 (695)
+|.|+|+.|+||||+|+.+..
T Consensus 1 ~I~i~G~~GsGKst~a~~la~ 21 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAK 21 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999886
No 457
>PRK00279 adk adenylate kinase; Reviewed
Probab=94.13 E-value=0.087 Score=51.24 Aligned_cols=21 Identities=24% Similarity=0.411 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 042541 189 FIVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 189 vv~I~G~gGiGKTtLa~~~~~ 209 (695)
.|.|+|++|+||||+|+.++.
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~ 22 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAE 22 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 488999999999999998876
No 458
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=94.13 E-value=0.11 Score=58.67 Aligned_cols=75 Identities=13% Similarity=0.158 Sum_probs=49.9
Q ss_pred CCCCCCCcchHHHHHHHHHcCCceEEEEEcCCCCcHHHHHHHHhcccccccc-CCCcEEEEEeCCCCCHHHHHHHHHHhc
Q 042541 165 PVISPGLDVPLKELKMELFKDGRQFIVVSAPGGYGKTTLVQRLCKDDQVQGK-FKDDIFYVTVSKNPNVKAIVQKVLHHK 243 (695)
Q Consensus 165 ~~~~vGr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~-f~~~~~wv~~~~~~~~~~~~~~i~~~l 243 (695)
-+.++|.++.++.+...+.... -+.++|++|+||||+|+.+.+ .+... |.. ++++ .....+..+++..+...+
T Consensus 17 ~~~viG~~~a~~~l~~a~~~~~--~~ll~G~pG~GKT~la~~la~--~l~~~~~~~-~~~~-~n~~~~~~~~~~~v~~~~ 90 (608)
T TIGR00764 17 IDQVIGQEEAVEIIKKAAKQKR--NVLLIGEPGVGKSMLAKAMAE--LLPDEELED-ILVY-PNPEDPNMPRIVEVPAGE 90 (608)
T ss_pred HhhccCHHHHHHHHHHHHHcCC--CEEEECCCCCCHHHHHHHHHH--HcCchhhee-EEEE-eCCCCCchHHHHHHHHhh
Confidence 3567898888887777776543 566999999999999999987 44433 333 2222 222335556677777666
Q ss_pred CC
Q 042541 244 GY 245 (695)
Q Consensus 244 ~~ 245 (695)
+.
T Consensus 91 g~ 92 (608)
T TIGR00764 91 GR 92 (608)
T ss_pred ch
Confidence 53
No 459
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=94.12 E-value=0.039 Score=52.29 Aligned_cols=22 Identities=32% Similarity=0.578 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 042541 188 QFIVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 188 ~vv~I~G~gGiGKTtLa~~~~~ 209 (695)
.+++|+|+.|+|||||++.++.
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~ 24 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQ 24 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 4789999999999999999976
No 460
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=94.10 E-value=0.068 Score=52.91 Aligned_cols=60 Identities=23% Similarity=0.346 Sum_probs=38.7
Q ss_pred HHHHHHHH--cCCceEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCCCCCHHHHH
Q 042541 176 KELKMELF--KDGRQFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSKNPNVKAIV 236 (695)
Q Consensus 176 ~~l~~~L~--~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~~~~~~~~~ 236 (695)
.+++..+. .++..+|+|.|.+|+|||||.-.+-.....+++ ...|+-|+-|..++--.++
T Consensus 38 ~~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~-rVaVlAVDPSSp~TGGsiL 99 (323)
T COG1703 38 RELLRALYPRTGNAHVIGITGVPGAGKSTLIEALGRELRERGH-RVAVLAVDPSSPFTGGSIL 99 (323)
T ss_pred HHHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHHHHCCc-EEEEEEECCCCCCCCcccc
Confidence 45555555 556789999999999999999887763322222 2335555556666544443
No 461
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=94.10 E-value=0.085 Score=59.36 Aligned_cols=75 Identities=15% Similarity=0.199 Sum_probs=54.8
Q ss_pred CCCCCCCcchHHHHHHHHHcCCceEEEEEcCCCCcHHHHHHHHhccccccc-cCCCcEEEEEeCCCCCHHHHHHHHHHhc
Q 042541 165 PVISPGLDVPLKELKMELFKDGRQFIVVSAPGGYGKTTLVQRLCKDDQVQG-KFKDDIFYVTVSKNPNVKAIVQKVLHHK 243 (695)
Q Consensus 165 ~~~~vGr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~-~f~~~~~wv~~~~~~~~~~~~~~i~~~l 243 (695)
-+.++|.++.++.|...+... +.+.|+|++|+||||+|+.+.+ .+.. .++. ++|..- ...+...+++.+...+
T Consensus 30 ~~~vigq~~a~~~L~~~~~~~--~~~l~~G~~G~GKttla~~l~~--~l~~~~~~~-~~~~~n-p~~~~~~~~~~v~~~~ 103 (637)
T PRK13765 30 IDQVIGQEHAVEVIKKAAKQR--RHVMMIGSPGTGKSMLAKAMAE--LLPKEELQD-ILVYPN-PEDPNNPKIRTVPAGK 103 (637)
T ss_pred HHHcCChHHHHHHHHHHHHhC--CeEEEECCCCCcHHHHHHHHHH--HcChHhHHH-heEeeC-CCcchHHHHHHHHHhc
Confidence 456789888888887777654 4789999999999999999987 3432 3444 667544 4446777888887776
Q ss_pred CC
Q 042541 244 GY 245 (695)
Q Consensus 244 ~~ 245 (695)
|.
T Consensus 104 G~ 105 (637)
T PRK13765 104 GK 105 (637)
T ss_pred CH
Confidence 54
No 462
>PRK00300 gmk guanylate kinase; Provisional
Probab=94.07 E-value=0.043 Score=52.93 Aligned_cols=24 Identities=46% Similarity=0.674 Sum_probs=21.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhc
Q 042541 186 GRQFIVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 186 ~~~vv~I~G~gGiGKTtLa~~~~~ 209 (695)
...+|+|+|++|+|||||++.++.
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~ 27 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLE 27 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHh
Confidence 347899999999999999999987
No 463
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=94.07 E-value=0.21 Score=55.54 Aligned_cols=44 Identities=9% Similarity=0.021 Sum_probs=34.9
Q ss_pred CCCCCCcchHHHHHHHHH--cCCceEEEEEcCCCCcHHHHHHHHhc
Q 042541 166 VISPGLDVPLKELKMELF--KDGRQFIVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 166 ~~~vGr~~~~~~l~~~L~--~~~~~vv~I~G~gGiGKTtLa~~~~~ 209 (695)
+.++|....++++.+.+. .....-|.|+|..|+||+.+|+.+.+
T Consensus 204 ~~~ig~s~~~~~~~~~~~~~A~~~~pvlI~GE~GtGK~~lA~aiH~ 249 (520)
T PRK10820 204 SQIVAVSPKMRQVVEQARKLAMLDAPLLITGDTGTGKDLLAYACHL 249 (520)
T ss_pred cceeECCHHHHHHHHHHHHHhCCCCCEEEECCCCccHHHHHHHHHH
Confidence 467999988888887765 22334588999999999999999765
No 464
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=94.07 E-value=0.048 Score=56.39 Aligned_cols=45 Identities=20% Similarity=0.187 Sum_probs=36.2
Q ss_pred CCCCCCCcchHHHHHHHHHcCCceEEEEEcCCCCcHHHHHHHHhc
Q 042541 165 PVISPGLDVPLKELKMELFKDGRQFIVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 165 ~~~~vGr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~~~~ 209 (695)
-..++|.+..++.+.-.+...+..-+.+.|..|+||||+|+.+..
T Consensus 7 f~~i~Gq~~~~~~l~~~~~~~~~~~vLl~G~pG~gKT~lar~la~ 51 (334)
T PRK13407 7 FSAIVGQEEMKQAMVLTAIDPGIGGVLVFGDRGTGKSTAVRALAA 51 (334)
T ss_pred HHHhCCHHHHHHHHHHHHhccCCCcEEEEcCCCCCHHHHHHHHHH
Confidence 345799998888887656545556699999999999999999865
No 465
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.06 E-value=0.26 Score=56.15 Aligned_cols=59 Identities=19% Similarity=0.187 Sum_probs=34.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCCCC-CHHHHHHHHHHhcCCC
Q 042541 187 RQFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSKNP-NVKAIVQKVLHHKGYP 246 (695)
Q Consensus 187 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~~~-~~~~~~~~i~~~l~~~ 246 (695)
.++|+++|+.|+||||.+..++..... .+-...|..++..... ...+-+....+.++.+
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~-~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvp 244 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVA-REGADQLALLTTDSFRIGALEQLRIYGRILGVP 244 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHH-HcCCCeEEEecCcccchHHHHHHHHHHHhCCCC
Confidence 479999999999999999888763211 1111225555543211 2334445555555543
No 466
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=94.05 E-value=0.044 Score=62.02 Aligned_cols=147 Identities=14% Similarity=0.173 Sum_probs=80.0
Q ss_pred CCCCCCcchHHHHHHHHHcCCceEEEEEcCCCCcHHHHHHHHhcccccc-ccCC-----CcEEEEEeCCCCCHHHHHHHH
Q 042541 166 VISPGLDVPLKELKMELFKDGRQFIVVSAPGGYGKTTLVQRLCKDDQVQ-GKFK-----DDIFYVTVSKNPNVKAIVQKV 239 (695)
Q Consensus 166 ~~~vGr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~-~~f~-----~~~~wv~~~~~~~~~~~~~~i 239 (695)
+.++||++|+.++++.|....-.--.++|.+|||||+++.-++. ++. +.-+ ..++-.+++
T Consensus 170 DPvIGRd~EI~r~iqIL~RR~KNNPvLiGEpGVGKTAIvEGLA~--rIv~g~VP~~L~~~~i~sLD~g------------ 235 (786)
T COG0542 170 DPVIGRDEEIRRTIQILSRRTKNNPVLVGEPGVGKTAIVEGLAQ--RIVNGDVPESLKDKRIYSLDLG------------ 235 (786)
T ss_pred CCCcChHHHHHHHHHHHhccCCCCCeEecCCCCCHHHHHHHHHH--HHhcCCCCHHHcCCEEEEecHH------------
Confidence 34699999999999999833222235789999999999877766 331 1111 112111111
Q ss_pred HHhcCCCCCCCCChHHHHHHHHHHHHhcC-CCcEEEEEeCCCCCCh---------HHHhhhccCC-CC-CEEE-EEcCCC
Q 042541 240 LHHKGYPVPEFQTDEAAINDLERFFKQMR-IEAILLVLDDVWPGSE---------SLLQKLGFQL-PD-YKIL-VTSRSE 306 (695)
Q Consensus 240 ~~~l~~~~~~~~~~~~~~~~l~~~~~~l~-~~~~LlVlDdv~~~~~---------~~~~~l~~~~-~g-s~ii-vTtR~~ 306 (695)
.-..+. .-..+..++++.+++.++ .++..|++|.+...-. +....+.+.. .| -+.| .||-++
T Consensus 236 -~LvAGa----kyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLARGeL~~IGATT~~E 310 (786)
T COG0542 236 -SLVAGA----KYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALARGELRCIGATTLDE 310 (786)
T ss_pred -HHhccc----cccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHhcCCeEEEEeccHHH
Confidence 111111 112234456666665443 4489999999743211 0111122211 23 2444 466544
Q ss_pred CC-------CC---CCeEecCCCChHHHHHHHHHh
Q 042541 307 FP-------QF---GSVHYLKPLTYEAARTLFLHS 331 (695)
Q Consensus 307 ~~-------~~---~~~~~l~~L~~~ea~~Lf~~~ 331 (695)
.. +. -..+.+..-+.+++..+++-.
T Consensus 311 YRk~iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrGl 345 (786)
T COG0542 311 YRKYIEKDAALERRFQKVLVDEPSVEDTIAILRGL 345 (786)
T ss_pred HHHHhhhchHHHhcCceeeCCCCCHHHHHHHHHHH
Confidence 21 11 116778888888888887653
No 467
>PRK14737 gmk guanylate kinase; Provisional
Probab=94.04 E-value=0.047 Score=51.58 Aligned_cols=24 Identities=29% Similarity=0.560 Sum_probs=21.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhc
Q 042541 186 GRQFIVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 186 ~~~vv~I~G~gGiGKTtLa~~~~~ 209 (695)
+..+|.|+|++|+|||||++.+..
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~ 26 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLE 26 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHh
Confidence 457899999999999999999986
No 468
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=94.03 E-value=0.049 Score=51.49 Aligned_cols=31 Identities=42% Similarity=0.676 Sum_probs=26.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhccccccccCCC
Q 042541 187 RQFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKD 219 (695)
Q Consensus 187 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~ 219 (695)
.++|.|+|+.|+|||||++.+.. .....|..
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~--~~~~~~~~ 32 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQ--EFPDKFGR 32 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHH--HSTTTEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHH--hccccccc
Confidence 47899999999999999999987 55666643
No 469
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=94.03 E-value=0.041 Score=47.67 Aligned_cols=22 Identities=50% Similarity=0.889 Sum_probs=19.7
Q ss_pred EEEEcCCCCcHHHHHHHHhccc
Q 042541 190 IVVSAPGGYGKTTLVQRLCKDD 211 (695)
Q Consensus 190 v~I~G~gGiGKTtLa~~~~~~~ 211 (695)
|.|+|..|+|||||.+.+....
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~~ 23 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGGE 23 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEECcCCCCHHHHHHHHhcCC
Confidence 7899999999999999998753
No 470
>PRK14529 adenylate kinase; Provisional
Probab=94.02 E-value=0.18 Score=48.88 Aligned_cols=20 Identities=35% Similarity=0.424 Sum_probs=18.5
Q ss_pred EEEEcCCCCcHHHHHHHHhc
Q 042541 190 IVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 190 v~I~G~gGiGKTtLa~~~~~ 209 (695)
|.|.|++|+||||+|+.++.
T Consensus 3 I~l~G~PGsGK~T~a~~La~ 22 (223)
T PRK14529 3 ILIFGPNGSGKGTQGALVKK 22 (223)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78899999999999998876
No 471
>PRK08149 ATP synthase SpaL; Validated
Probab=94.02 E-value=0.23 Score=52.94 Aligned_cols=90 Identities=16% Similarity=0.252 Sum_probs=52.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCC-CCCHHHHHHHHHHhcCCC-------CCCCCCh----
Q 042541 186 GRQFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSK-NPNVKAIVQKVLHHKGYP-------VPEFQTD---- 253 (695)
Q Consensus 186 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~-~~~~~~~~~~i~~~l~~~-------~~~~~~~---- 253 (695)
....++|+|..|+|||||+..++.... -+. ++...+.. ..+..++..+........ ..+.+..
T Consensus 150 ~Gq~i~I~G~sG~GKTTLl~~i~~~~~----~dv-~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~sd~p~~~r~~ 224 (428)
T PRK08149 150 VGQRMGIFASAGCGKTSLMNMLIEHSE----ADV-FVIGLIGERGREVTEFVESLRASSRREKCVLVYATSDFSSVDRCN 224 (428)
T ss_pred cCCEEEEECCCCCChhHHHHHHhcCCC----CCe-EEEEEEeeCCccHHHHHHHHhhcccccceEEEEECCCCCHHHHHh
Confidence 457899999999999999999886321 122 23444543 335666666666643211 1111111
Q ss_pred -HHHHHHHHHHHHhcCCCcEEEEEeCCCC
Q 042541 254 -EAAINDLERFFKQMRIEAILLVLDDVWP 281 (695)
Q Consensus 254 -~~~~~~l~~~~~~l~~~~~LlVlDdv~~ 281 (695)
......+.+.+.. +++++||++||+-.
T Consensus 225 a~~~a~tiAE~fr~-~G~~Vll~~DslTr 252 (428)
T PRK08149 225 AALVATTVAEYFRD-QGKRVVLFIDSMTR 252 (428)
T ss_pred HHHHHHHHHHHHHH-cCCCEEEEccchHH
Confidence 1122234444432 59999999999843
No 472
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=94.01 E-value=0.43 Score=44.75 Aligned_cols=117 Identities=19% Similarity=0.206 Sum_probs=62.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCC---CCCHHHHHHHHH--Hh--cCCCC-CCCCChHHHHH
Q 042541 187 RQFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSK---NPNVKAIVQKVL--HH--KGYPV-PEFQTDEAAIN 258 (695)
Q Consensus 187 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~---~~~~~~~~~~i~--~~--l~~~~-~~~~~~~~~~~ 258 (695)
...|.|+|..|-||||.|..+.- +...+ ...|..+.+=. .......+..+- .- .+... ....+......
T Consensus 22 ~g~v~v~~g~GkGKtt~a~g~a~--ra~g~-G~~V~ivQFlKg~~~~GE~~~l~~l~~v~~~~~g~~~~~~~~~~~e~~~ 98 (191)
T PRK05986 22 KGLLIVHTGNGKGKSTAAFGMAL--RAVGH-GKKVGVVQFIKGAWSTGERNLLEFGGGVEFHVMGTGFTWETQDRERDIA 98 (191)
T ss_pred CCeEEEECCCCCChHHHHHHHHH--HHHHC-CCeEEEEEEecCCCccCHHHHHhcCCCcEEEECCCCCcccCCCcHHHHH
Confidence 47899999999999999987765 33222 11244555432 234444444321 10 11110 00112222222
Q ss_pred HHHHHH----Hhc-CCCcEEEEEeCCCCC-------ChHHHhhhccCCCCCEEEEEcCCC
Q 042541 259 DLERFF----KQM-RIEAILLVLDDVWPG-------SESLLQKLGFQLPDYKILVTSRSE 306 (695)
Q Consensus 259 ~l~~~~----~~l-~~~~~LlVlDdv~~~-------~~~~~~~l~~~~~gs~iivTtR~~ 306 (695)
..++.+ +.+ .++--+||||.+-.. .+.+++.+....++..||+|-|..
T Consensus 99 ~~~~~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~ 158 (191)
T PRK05986 99 AAREGWEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGA 158 (191)
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCC
Confidence 233322 333 355669999997322 133555555555578999999976
No 473
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=94.00 E-value=0.046 Score=49.11 Aligned_cols=23 Identities=35% Similarity=0.551 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhc
Q 042541 187 RQFIVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 187 ~~vv~I~G~gGiGKTtLa~~~~~ 209 (695)
.++|+|+|.+|+||||+.+.+..
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~ 26 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALK 26 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHH
Confidence 57999999999999999988776
No 474
>PRK09099 type III secretion system ATPase; Provisional
Probab=94.00 E-value=0.22 Score=53.29 Aligned_cols=92 Identities=18% Similarity=0.335 Sum_probs=52.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCCCCCHHHHHHHHHHhcCCC-------CCCCCCh----
Q 042541 185 DGRQFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSKNPNVKAIVQKVLHHKGYP-------VPEFQTD---- 253 (695)
Q Consensus 185 ~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~~~~~~~~~~~i~~~l~~~-------~~~~~~~---- 253 (695)
.....++|.|..|+|||||++.+..... .+.++++..-.+.....++.+.+...-+.. ..+.+..
T Consensus 161 ~~Gq~~~I~G~sG~GKTtLl~~ia~~~~----~d~~vi~~iGer~~ev~ef~~~~~~~~~l~rtvvv~~tsd~p~~~r~~ 236 (441)
T PRK09099 161 GEGQRMGIFAPAGVGKSTLMGMFARGTQ----CDVNVIALIGERGREVREFIELILGEDGMARSVVVCATSDRSSIERAK 236 (441)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC----CCeEEEEEEccChHHHHHHHHHHhhcCCcceEEEEEECCCCCHHHHHH
Confidence 3457899999999999999999986322 123354443334445666666665442211 1111111
Q ss_pred -HHHHHHHHHHHHhcCCCcEEEEEeCCCC
Q 042541 254 -EAAINDLERFFKQMRIEAILLVLDDVWP 281 (695)
Q Consensus 254 -~~~~~~l~~~~~~l~~~~~LlVlDdv~~ 281 (695)
....-.+.+.+.. +++++|+++||+-.
T Consensus 237 a~~~a~tiAEyfrd-~G~~VLl~~DslTr 264 (441)
T PRK09099 237 AAYVATAIAEYFRD-RGLRVLLMMDSLTR 264 (441)
T ss_pred HHHHHHHHHHHHHH-cCCCEEEeccchhH
Confidence 1112223444422 58999999999843
No 475
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=93.99 E-value=0.093 Score=47.77 Aligned_cols=34 Identities=24% Similarity=0.276 Sum_probs=27.1
Q ss_pred HHHcCCceEEEEEcCCCCcHHHHHHHHhcccccccc
Q 042541 181 ELFKDGRQFIVVSAPGGYGKTTLVQRLCKDDQVQGK 216 (695)
Q Consensus 181 ~L~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~ 216 (695)
.+......+|.+.|.+|.||||+|.+++. ++...
T Consensus 17 ~~~~~~~~viW~TGLSGsGKSTiA~ale~--~L~~~ 50 (197)
T COG0529 17 ALKGQKGAVIWFTGLSGSGKSTIANALEE--KLFAK 50 (197)
T ss_pred HHhCCCCeEEEeecCCCCCHHHHHHHHHH--HHHHc
Confidence 34455678999999999999999999987 55443
No 476
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=93.99 E-value=0.076 Score=51.84 Aligned_cols=61 Identities=23% Similarity=0.293 Sum_probs=35.0
Q ss_pred hHHHHHHHHH--cCCceEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCCCCCHHHH
Q 042541 174 PLKELKMELF--KDGRQFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSKNPNVKAI 235 (695)
Q Consensus 174 ~~~~l~~~L~--~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~~~~~~~~ 235 (695)
+..++++.+. .++..+|+|.|++|+|||||.-.+...-+- .....+|+-|+-|..++--.+
T Consensus 14 ~~~~ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~~~~~-~g~~VaVlAVDPSSp~tGGAl 76 (266)
T PF03308_consen 14 EARELLKRLYPHTGRAHVIGITGPPGAGKSTLIDALIRELRE-RGKRVAVLAVDPSSPFTGGAL 76 (266)
T ss_dssp HHHHHHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHHHHHH-TT--EEEEEE-GGGGCC---S
T ss_pred HHHHHHHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHHHHhh-cCCceEEEEECCCCCCCCCcc
Confidence 4456666665 345789999999999999999888763221 223333555555555544333
No 477
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=93.99 E-value=0.3 Score=55.84 Aligned_cols=25 Identities=24% Similarity=0.340 Sum_probs=21.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhc
Q 042541 185 DGRQFIVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 185 ~~~~vv~I~G~gGiGKTtLa~~~~~ 209 (695)
+....|+|+|..|+|||||++.+..
T Consensus 497 ~~Ge~vaIvG~SGsGKSTL~KLL~g 521 (709)
T COG2274 497 PPGEKVAIVGRSGSGKSTLLKLLLG 521 (709)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhc
Confidence 3457899999999999999998754
No 478
>PRK03846 adenylylsulfate kinase; Provisional
Probab=93.98 E-value=0.051 Score=52.11 Aligned_cols=25 Identities=20% Similarity=0.246 Sum_probs=22.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhc
Q 042541 185 DGRQFIVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 185 ~~~~vv~I~G~gGiGKTtLa~~~~~ 209 (695)
....+|+|+|++|+||||||+.+..
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~ 46 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEE 46 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4568999999999999999999987
No 479
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=93.94 E-value=0.46 Score=46.25 Aligned_cols=113 Identities=14% Similarity=0.224 Sum_probs=57.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCCCCCHHHHHHHHHHhcCCCCC---CCCChHHHHHHHHH
Q 042541 186 GRQFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSKNPNVKAIVQKVLHHKGYPVP---EFQTDEAAINDLER 262 (695)
Q Consensus 186 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~---~~~~~~~~~~~l~~ 262 (695)
..+++.|.|+.|.||||+.+.+.-.. +..+-.. ..|..-.. -....+|...++.... ....-.....++..
T Consensus 30 ~g~~~~itG~N~~GKStll~~i~~~~-~la~~G~-~v~a~~~~----~~~~~~i~~~~~~~d~~~~~~StF~~e~~~~~~ 103 (222)
T cd03287 30 GGYCQIITGPNMGGKSSYIRQVALIT-IMAQIGS-FVPASSAT----LSIFDSVLTRMGASDSIQHGMSTFMVELSETSH 103 (222)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH-HHHhCCC-EEEcCceE----EeccceEEEEecCccccccccchHHHHHHHHHH
Confidence 34788999999999999998876521 1111111 11221000 0111122222221111 11122333455555
Q ss_pred HHHhcCCCcEEEEEeCCCCCCh---------HHHhhhccCCCCCEEEEEcCCC
Q 042541 263 FFKQMRIEAILLVLDDVWPGSE---------SLLQKLGFQLPDYKILVTSRSE 306 (695)
Q Consensus 263 ~~~~l~~~~~LlVlDdv~~~~~---------~~~~~l~~~~~gs~iivTtR~~ 306 (695)
+++.. +++-|+++|+...... .+++.+... .++.+|++|...
T Consensus 104 il~~~-~~~sLvllDE~~~gT~~~d~~~i~~~il~~l~~~-~~~~~i~~TH~~ 154 (222)
T cd03287 104 ILSNC-TSRSLVILDELGRGTSTHDGIAIAYATLHYLLEE-KKCLVLFVTHYP 154 (222)
T ss_pred HHHhC-CCCeEEEEccCCCCCChhhHHHHHHHHHHHHHhc-cCCeEEEEcccH
Confidence 55433 5689999999743321 123333322 578899998875
No 480
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=93.94 E-value=0.05 Score=52.79 Aligned_cols=57 Identities=23% Similarity=0.327 Sum_probs=35.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeC---------CCCCHHHH--HHHHHHhcCCC
Q 042541 187 RQFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVS---------KNPNVKAI--VQKVLHHKGYP 246 (695)
Q Consensus 187 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~---------~~~~~~~~--~~~i~~~l~~~ 246 (695)
+..|.++||+|+||||..+.++.+. ...+.. .+-|++. -+.++.+. .++.+++-+..
T Consensus 19 p~~ilVvGMAGSGKTTF~QrL~~hl--~~~~~p-pYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LG 86 (366)
T KOG1532|consen 19 PVIILVVGMAGSGKTTFMQRLNSHL--HAKKTP-PYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLG 86 (366)
T ss_pred CcEEEEEecCCCCchhHHHHHHHHH--hhccCC-CeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCC
Confidence 5678899999999999999998743 333322 2244432 22345444 35677775443
No 481
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=93.93 E-value=0.16 Score=47.24 Aligned_cols=83 Identities=18% Similarity=0.313 Sum_probs=44.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCCCCCHHHHHHHHHHhcCCCCCCCCChHHHHHHHHHHHHhcC
Q 042541 189 FIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSKNPNVKAIVQKVLHHKGYPVPEFQTDEAAINDLERFFKQMR 268 (695)
Q Consensus 189 vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~~l~ 268 (695)
++.|.|.+|+||||+|..+... . ...++++...... ..+....|..+...........+. -..+.+.++...
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~--~----~~~~~~iat~~~~-~~e~~~ri~~h~~~R~~~w~t~E~-~~~l~~~i~~~~ 74 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQ--S----GLQVLYIATAQPF-DDEMAARIAHHRQRRPAHWQTVEE-PLDLAELLRADA 74 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHH--c----CCCcEeCcCCCCC-hHHHHHHHHHHHhcCCCCCeEecc-cccHHHHHHhhc
Confidence 6899999999999999988762 2 2224455544433 344555665543322211111111 112444443312
Q ss_pred CCcEEEEEeCC
Q 042541 269 IEAILLVLDDV 279 (695)
Q Consensus 269 ~~~~LlVlDdv 279 (695)
.+.-++++|.+
T Consensus 75 ~~~~~VlID~L 85 (170)
T PRK05800 75 APGRCVLVDCL 85 (170)
T ss_pred CCCCEEEehhH
Confidence 23337888886
No 482
>CHL00060 atpB ATP synthase CF1 beta subunit
Probab=93.93 E-value=0.19 Score=54.17 Aligned_cols=54 Identities=15% Similarity=0.107 Sum_probs=37.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCCCC-CHHHHHHHHHH
Q 042541 186 GRQFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSKNP-NVKAIVQKVLH 241 (695)
Q Consensus 186 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~~~-~~~~~~~~i~~ 241 (695)
..+-++|.|.+|+|||||+..+.... .+.+=+. ++++-+++.. ...+++..+..
T Consensus 160 kGQR~gIfgg~GvGKs~L~~~~~~~~-~~~~~dv-~V~~lIGERgrEv~efi~~~~~ 214 (494)
T CHL00060 160 RGGKIGLFGGAGVGKTVLIMELINNI-AKAHGGV-SVFGGVGERTREGNDLYMEMKE 214 (494)
T ss_pred cCCEEeeecCCCCChhHHHHHHHHHH-HHhcCCe-EEEEEeccCchHHHHHHHHHHh
Confidence 35789999999999999999887631 1111134 6677777654 56777777766
No 483
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=93.93 E-value=0.18 Score=56.61 Aligned_cols=115 Identities=15% Similarity=0.124 Sum_probs=58.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhccccccccC--CCcEEEEEeCCCCCHHHHHHHHHHhcCCC-CCCC--CChHHHHHHHH
Q 042541 187 RQFIVVSAPGGYGKTTLVQRLCKDDQVQGKF--KDDIFYVTVSKNPNVKAIVQKVLHHKGYP-VPEF--QTDEAAINDLE 261 (695)
Q Consensus 187 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f--~~~~~wv~~~~~~~~~~~~~~i~~~l~~~-~~~~--~~~~~~~~~l~ 261 (695)
.++..|.|.+|.||||++..+.. .+.... ....+.+..........+...+-..+..- .+.. .........+.
T Consensus 167 ~~~~vItGgpGTGKTt~v~~ll~--~l~~~~~~~~~~i~l~APTgkAA~rL~e~~~~~~~~~~~~~~~~~~~~~~a~TiH 244 (615)
T PRK10875 167 RRISVISGGPGTGKTTTVAKLLA--ALIQLADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEEASTLH 244 (615)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHH--HHHHhcCCCCcEEEEECCcHHHHHHHHHHHHhhhhccccchhhhhcCCCchHHHH
Confidence 47899999999999999988876 222211 11133555555444444444443322110 0000 00000123344
Q ss_pred HHHHh-cC--------CCc---EEEEEeCCCCCChHHHhhhcc-CCCCCEEEEEc
Q 042541 262 RFFKQ-MR--------IEA---ILLVLDDVWPGSESLLQKLGF-QLPDYKILVTS 303 (695)
Q Consensus 262 ~~~~~-l~--------~~~---~LlVlDdv~~~~~~~~~~l~~-~~~gs~iivTt 303 (695)
+++.. .. +.+ -++|+|.+.-.+-.+...+.. -.+++|+|+--
T Consensus 245 rlLg~~~~~~~~~~~~~~~l~~dvlIvDEaSMvd~~lm~~ll~al~~~~rlIlvG 299 (615)
T PRK10875 245 RLLGAQPGSQRLRYHAGNPLHLDVLVVDEASMVDLPMMARLIDALPPHARVIFLG 299 (615)
T ss_pred HHhCcCCCccchhhccccCCCCCeEEEChHhcccHHHHHHHHHhcccCCEEEEec
Confidence 44411 11 111 389999987776554443333 33578887744
No 484
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=93.91 E-value=0.2 Score=57.36 Aligned_cols=84 Identities=17% Similarity=0.190 Sum_probs=52.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCCCCCHHHHHHHHHHhcCCCCCC-----CCChHHHHHHHH
Q 042541 187 RQFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSKNPNVKAIVQKVLHHKGYPVPE-----FQTDEAAINDLE 261 (695)
Q Consensus 187 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~~~~~l~ 261 (695)
.+++-|+|++|+|||||+.+++.. .... ...++|++..+.++.. .+++++..... ....+.....+.
T Consensus 60 GsiteI~G~~GsGKTtLal~~~~~--a~~~-G~~v~yId~E~t~~~~-----~A~~lGvDl~~llv~~~~~~E~~l~~i~ 131 (790)
T PRK09519 60 GRVIEIYGPESSGKTTVALHAVAN--AQAA-GGVAAFIDAEHALDPD-----YAKKLGVDTDSLLVSQPDTGEQALEIAD 131 (790)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH--HHHc-CCcEEEECCccchhHH-----HHHHcCCChhHeEEecCCCHHHHHHHHH
Confidence 588999999999999999876552 2222 2337899988877743 56666654221 112233333333
Q ss_pred HHHHhcCCCcEEEEEeCCC
Q 042541 262 RFFKQMRIEAILLVLDDVW 280 (695)
Q Consensus 262 ~~~~~l~~~~~LlVlDdv~ 280 (695)
.+++ .++.-|||+|.+.
T Consensus 132 ~lv~--~~~~~LVVIDSI~ 148 (790)
T PRK09519 132 MLIR--SGALDIVVIDSVA 148 (790)
T ss_pred HHhh--cCCCeEEEEcchh
Confidence 3222 3567799999974
No 485
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=93.89 E-value=0.042 Score=50.92 Aligned_cols=21 Identities=38% Similarity=0.795 Sum_probs=18.1
Q ss_pred EEEEcCCCCcHHHHHHHHhcc
Q 042541 190 IVVSAPGGYGKTTLVQRLCKD 210 (695)
Q Consensus 190 v~I~G~gGiGKTtLa~~~~~~ 210 (695)
|.|.|.+|+|||||++.+++.
T Consensus 2 i~iTG~pG~GKTTll~k~i~~ 22 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEE 22 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHH
Confidence 789999999999999998873
No 486
>PRK13949 shikimate kinase; Provisional
Probab=93.88 E-value=0.044 Score=50.97 Aligned_cols=21 Identities=38% Similarity=0.376 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 042541 189 FIVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 189 vv~I~G~gGiGKTtLa~~~~~ 209 (695)
-|.|+|+.|+||||+++.+++
T Consensus 3 ~I~liG~~GsGKstl~~~La~ 23 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALAR 23 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999987
No 487
>PRK13948 shikimate kinase; Provisional
Probab=93.85 E-value=0.052 Score=50.96 Aligned_cols=24 Identities=17% Similarity=0.267 Sum_probs=21.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhc
Q 042541 186 GRQFIVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 186 ~~~vv~I~G~gGiGKTtLa~~~~~ 209 (695)
....|.++|+.|+||||+++.+.+
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~ 32 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSR 32 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999987
No 488
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=93.81 E-value=0.07 Score=54.72 Aligned_cols=47 Identities=17% Similarity=0.352 Sum_probs=31.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCCCCCHHHHHH
Q 042541 188 QFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSKNPNVKAIVQ 237 (695)
Q Consensus 188 ~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~~~~~~~~~~ 237 (695)
+++.+.|-||+||||+|.+.+-. .... ..+++-++.....+..+++.
T Consensus 2 r~~~~~GKGGVGKTT~aaA~A~~--~A~~-G~rtLlvS~Dpa~~L~d~l~ 48 (305)
T PF02374_consen 2 RILFFGGKGGVGKTTVAAALALA--LARR-GKRTLLVSTDPAHSLSDVLG 48 (305)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHH--HHHT-TS-EEEEESSTTTHHHHHHT
T ss_pred eEEEEecCCCCCcHHHHHHHHHH--HhhC-CCCeeEeecCCCccHHHHhC
Confidence 68999999999999999777652 2221 23366777766655555443
No 489
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=93.79 E-value=0.059 Score=55.87 Aligned_cols=45 Identities=16% Similarity=0.152 Sum_probs=38.2
Q ss_pred CCCCCCcchHHHHHHHHHcCCceEEEEEcCCCCcHHHHHHHHhcc
Q 042541 166 VISPGLDVPLKELKMELFKDGRQFIVVSAPGGYGKTTLVQRLCKD 210 (695)
Q Consensus 166 ~~~vGr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~~~~~ 210 (695)
..+||-++.+..|...+.++...-|.|.|..|+||||+|+.+++-
T Consensus 17 ~~ivGq~~~k~al~~~~~~p~~~~vli~G~~GtGKs~~ar~~~~~ 61 (350)
T CHL00081 17 TAIVGQEEMKLALILNVIDPKIGGVMIMGDRGTGKSTTIRALVDL 61 (350)
T ss_pred HHHhChHHHHHHHHHhccCCCCCeEEEEcCCCCCHHHHHHHHHHH
Confidence 457999988888877777877777889999999999999998763
No 490
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=93.76 E-value=0.056 Score=51.51 Aligned_cols=23 Identities=17% Similarity=0.332 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhc
Q 042541 187 RQFIVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 187 ~~vv~I~G~gGiGKTtLa~~~~~ 209 (695)
..+|.|.|.+|+||||+|+.++.
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~ 25 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIAR 25 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999987
No 491
>PRK05922 type III secretion system ATPase; Validated
Probab=93.74 E-value=0.45 Score=50.82 Aligned_cols=90 Identities=16% Similarity=0.234 Sum_probs=50.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCC-CCCHHHHHHHHHHhcCCCC-------CCCCChH---
Q 042541 186 GRQFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSK-NPNVKAIVQKVLHHKGYPV-------PEFQTDE--- 254 (695)
Q Consensus 186 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~-------~~~~~~~--- 254 (695)
....++|+|..|+|||||.+.+.... ..+.++ .+-+++ .....+.+.+......... .+.+...
T Consensus 156 ~GqrigI~G~nG~GKSTLL~~Ia~~~----~~d~gv-i~liGerg~ev~eyl~q~~~~~~~~rTVlv~atsd~~~~~r~~ 230 (434)
T PRK05922 156 KGQRIGVFSEPGSGKSSLLSTIAKGS----KSTINV-IALIGERGREVREYIEQHKEGLAAQRTIIIASPAHETAPTKVI 230 (434)
T ss_pred CCcEEEEECCCCCChHHHHHHHhccC----CCCceE-EEEeCCCCchHHHHHHHHHhhccccceEEEEECCCCCHHHHHH
Confidence 35679999999999999999998632 123323 333433 3344556655554432211 1111111
Q ss_pred --HHHHHHHHHHHhcCCCcEEEEEeCCCC
Q 042541 255 --AAINDLERFFKQMRIEAILLVLDDVWP 281 (695)
Q Consensus 255 --~~~~~l~~~~~~l~~~~~LlVlDdv~~ 281 (695)
...-.+.+.++. +++++|+++||+-.
T Consensus 231 a~~~a~tiAEyfrd-~G~~VLl~~DslTR 258 (434)
T PRK05922 231 AGRAAMTIAEYFRD-QGHRVLFIMDSLSR 258 (434)
T ss_pred HHHHHHHHHHHHHH-cCCCEEEeccchhH
Confidence 112233444422 58999999999843
No 492
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=93.72 E-value=0.04 Score=50.95 Aligned_cols=20 Identities=30% Similarity=0.502 Sum_probs=18.2
Q ss_pred EEEEcCCCCcHHHHHHHHhc
Q 042541 190 IVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 190 v~I~G~gGiGKTtLa~~~~~ 209 (695)
|.|+|++|+||||+|+.+.+
T Consensus 1 i~l~G~~GsGKSTla~~l~~ 20 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAH 20 (163)
T ss_pred CEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999887
No 493
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=93.71 E-value=0.048 Score=49.79 Aligned_cols=20 Identities=45% Similarity=0.446 Sum_probs=18.7
Q ss_pred EEEEcCCCCcHHHHHHHHhc
Q 042541 190 IVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 190 v~I~G~gGiGKTtLa~~~~~ 209 (695)
|.|+|++|+||||+|+.+..
T Consensus 2 i~l~G~~GsGKstla~~la~ 21 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAK 21 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHH
Confidence 78999999999999999986
No 494
>PRK14530 adenylate kinase; Provisional
Probab=93.70 E-value=0.049 Score=53.01 Aligned_cols=22 Identities=27% Similarity=0.312 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 042541 188 QFIVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 188 ~vv~I~G~gGiGKTtLa~~~~~ 209 (695)
+.|.|+|++|+||||+|+.++.
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~ 25 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAE 25 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999876
No 495
>PRK14738 gmk guanylate kinase; Provisional
Probab=93.68 E-value=0.061 Score=51.90 Aligned_cols=24 Identities=29% Similarity=0.618 Sum_probs=21.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhc
Q 042541 186 GRQFIVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 186 ~~~vv~I~G~gGiGKTtLa~~~~~ 209 (695)
..+.|.|+|++|+|||||++.+..
T Consensus 12 ~~~~ivi~GpsG~GK~tl~~~L~~ 35 (206)
T PRK14738 12 KPLLVVISGPSGVGKDAVLARMRE 35 (206)
T ss_pred CCeEEEEECcCCCCHHHHHHHHHh
Confidence 468899999999999999999875
No 496
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=93.67 E-value=0.38 Score=53.54 Aligned_cols=50 Identities=22% Similarity=0.318 Sum_probs=35.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCCCCCHHHHHHHH
Q 042541 186 GRQFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSKNPNVKAIVQKV 239 (695)
Q Consensus 186 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~~~~~~~~~~~i 239 (695)
..+++.|.|.+|+|||+||.++.. ....++...++|++.... ..++.+.+
T Consensus 30 ~Gs~~li~G~pGsGKT~l~~qf~~--~~~~~~ge~~lyis~ee~--~~~i~~~~ 79 (509)
T PRK09302 30 KGRPTLVSGTAGTGKTLFALQFLV--NGIKRFDEPGVFVTFEES--PEDIIRNV 79 (509)
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHH--HHHHhcCCCEEEEEccCC--HHHHHHHH
Confidence 358999999999999999998865 222233444789988774 34444443
No 497
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=93.63 E-value=0.072 Score=52.32 Aligned_cols=21 Identities=29% Similarity=0.523 Sum_probs=16.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 042541 189 FIVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 189 vv~I~G~gGiGKTtLa~~~~~ 209 (695)
+..|.|++|.||||++..+..
T Consensus 19 ~~~i~GpPGTGKT~~l~~~i~ 39 (236)
T PF13086_consen 19 ITLIQGPPGTGKTTTLASIIA 39 (236)
T ss_dssp -EEEE-STTSSHHHHHHHHHH
T ss_pred CEEEECCCCCChHHHHHHHHH
Confidence 788999999999987766665
No 498
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=93.61 E-value=0.32 Score=53.21 Aligned_cols=114 Identities=21% Similarity=0.281 Sum_probs=65.2
Q ss_pred CceEEEEEcCCCCcHHH-HHHHHhccccccccC-CCcEEEEEeCCCC--CHHHHHHHHHHhcCCCCCCC----------C
Q 042541 186 GRQFIVVSAPGGYGKTT-LVQRLCKDDQVQGKF-KDDIFYVTVSKNP--NVKAIVQKVLHHKGYPVPEF----------Q 251 (695)
Q Consensus 186 ~~~vv~I~G~gGiGKTt-La~~~~~~~~~~~~f-~~~~~wv~~~~~~--~~~~~~~~i~~~l~~~~~~~----------~ 251 (695)
...||.|+|..|+|||| |++.+|.+ .| +.+ -|-+.+.. ....+.+.+.+.++...... .
T Consensus 370 ~n~vvvivgETGSGKTTQl~QyL~ed-----GY~~~G--mIGcTQPRRvAAiSVAkrVa~EM~~~lG~~VGYsIRFEdvT 442 (1042)
T KOG0924|consen 370 ENQVVVIVGETGSGKTTQLAQYLYED-----GYADNG--MIGCTQPRRVAAISVAKRVAEEMGVTLGDTVGYSIRFEDVT 442 (1042)
T ss_pred hCcEEEEEecCCCCchhhhHHHHHhc-----ccccCC--eeeecCchHHHHHHHHHHHHHHhCCccccccceEEEeeecC
Confidence 35899999999999996 56666653 22 223 33444443 34556677777765432110 0
Q ss_pred Ch------HHHHHHHHHHH-HhcCCCcEEEEEeCCCCCChH------HHhhhccCCCCCEEEEEcCCC
Q 042541 252 TD------EAAINDLERFF-KQMRIEAILLVLDDVWPGSES------LLQKLGFQLPDYKILVTSRSE 306 (695)
Q Consensus 252 ~~------~~~~~~l~~~~-~~l~~~~~LlVlDdv~~~~~~------~~~~l~~~~~gs~iivTtR~~ 306 (695)
.. ....-.|++.+ +..-.|--.+|+|.+.+..-. ++.........-|+||||-.-
T Consensus 443 ~~~T~IkymTDGiLLrEsL~d~~L~kYSviImDEAHERslNtDilfGllk~~larRrdlKliVtSATm 510 (1042)
T KOG0924|consen 443 SEDTKIKYMTDGILLRESLKDRDLDKYSVIIMDEAHERSLNTDILFGLLKKVLARRRDLKLIVTSATM 510 (1042)
T ss_pred CCceeEEEeccchHHHHHhhhhhhhheeEEEechhhhcccchHHHHHHHHHHHHhhccceEEEeeccc
Confidence 00 01122355555 433456678999998665421 233333444578999998764
No 499
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=93.59 E-value=0.32 Score=51.91 Aligned_cols=92 Identities=21% Similarity=0.273 Sum_probs=52.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCCCCCHHHHHHHHHHhcCCCC-------CCCCCh-----
Q 042541 186 GRQFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSKNPNVKAIVQKVLHHKGYPV-------PEFQTD----- 253 (695)
Q Consensus 186 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~~~~~~~~~~~i~~~l~~~~-------~~~~~~----- 253 (695)
....++|+|..|+|||||++.++.... -+.+++.+.-.+.....+++...+..-+... .+.+..
T Consensus 155 ~Gqri~I~G~sG~GKTtLl~~Ia~~~~----~~~gvI~~iGerg~ev~e~~~~~l~~~gl~~tvvv~~tsd~s~~~r~ra 230 (432)
T PRK06793 155 IGQKIGIFAGSGVGKSTLLGMIAKNAK----ADINVISLVGERGREVKDFIRKELGEEGMRKSVVVVATSDESHLMQLRA 230 (432)
T ss_pred CCcEEEEECCCCCChHHHHHHHhccCC----CCeEEEEeCCCCcccHHHHHHHHhhhcccceeEEEEECCCCCHHHHHHH
Confidence 357889999999999999999886321 1222433222233566677666555432111 111111
Q ss_pred HHHHHHHHHHHHhcCCCcEEEEEeCCCCC
Q 042541 254 EAAINDLERFFKQMRIEAILLVLDDVWPG 282 (695)
Q Consensus 254 ~~~~~~l~~~~~~l~~~~~LlVlDdv~~~ 282 (695)
......+.+.+.. +++++|+++||+-..
T Consensus 231 ~~~a~~iAEyfr~-~G~~VLlilDslTr~ 258 (432)
T PRK06793 231 AKLATSIAEYFRD-QGNNVLLMMDSVTRF 258 (432)
T ss_pred HHHHHHHHHHHHH-cCCcEEEEecchHHH
Confidence 1112223333321 589999999998544
No 500
>TIGR03497 FliI_clade2 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=93.58 E-value=0.26 Score=52.51 Aligned_cols=91 Identities=18% Similarity=0.311 Sum_probs=49.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCCC-CCHHHHHHHHHHhcCCC-------CCCCCChH--
Q 042541 185 DGRQFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSKN-PNVKAIVQKVLHHKGYP-------VPEFQTDE-- 254 (695)
Q Consensus 185 ~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~~-~~~~~~~~~i~~~l~~~-------~~~~~~~~-- 254 (695)
.....++|+|..|+|||||++.+... .. -+.+++. -+++. ....++..+.+.+-+.. ..+.+...
T Consensus 135 ~~Gqri~I~G~sG~GKTtLl~~i~~~--~~--~~~gvi~-~~Ger~~ev~e~~~~~l~~~~~~~~v~v~~tsd~~~~~r~ 209 (413)
T TIGR03497 135 GKGQRVGIFAGSGVGKSTLLGMIARN--AK--ADINVIA-LIGERGREVRDFIEKDLGEEGLKRSVVVVATSDQPALMRL 209 (413)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC--CC--CCeEEEE-EEccchHHHHHHHHHHhcccccceEEEEEECCCCCHHHHH
Confidence 34578999999999999999988762 21 1232333 33433 24455555544431111 11111111
Q ss_pred ---HHHHHHHHHHHhcCCCcEEEEEeCCCC
Q 042541 255 ---AAINDLERFFKQMRIEAILLVLDDVWP 281 (695)
Q Consensus 255 ---~~~~~l~~~~~~l~~~~~LlVlDdv~~ 281 (695)
...-.+.+.+.. +++++||++||+-.
T Consensus 210 ~~~~~a~tiAEyfr~-~G~~Vll~~Dsltr 238 (413)
T TIGR03497 210 KAAFTATAIAEYFRD-QGKDVLLMMDSVTR 238 (413)
T ss_pred HHHHHHHHHHHHHHH-CCCCEEEEEcCcHH
Confidence 112233344422 58999999999843
Done!