Query 042541
Match_columns 695
No_of_seqs 437 out of 3849
Neff 9.6
Searched_HMMs 29240
Date Mon Mar 25 12:16:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042541.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042541hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 2E-46 6.7E-51 417.6 19.5 316 160-501 123-474 (549)
2 3sfz_A APAF-1, apoptotic pepti 100.0 9.1E-40 3.1E-44 401.9 28.3 317 158-498 116-452 (1249)
3 1vt4_I APAF-1 related killer D 100.0 7.8E-40 2.7E-44 367.9 20.8 284 166-491 128-436 (1221)
4 1z6t_A APAF-1, apoptotic prote 100.0 3.1E-36 1.1E-40 340.5 25.2 312 159-496 117-450 (591)
5 2qen_A Walker-type ATPase; unk 99.7 1.6E-15 5.4E-20 159.1 26.7 287 162-492 8-349 (350)
6 1w5s_A Origin recognition comp 99.7 6.1E-16 2.1E-20 166.2 17.7 284 165-464 21-371 (412)
7 2fna_A Conserved hypothetical 99.7 4.1E-15 1.4E-19 156.4 23.2 287 164-491 11-356 (357)
8 4fcg_A Uncharacterized protein 99.6 3.4E-15 1.2E-19 154.9 15.5 159 528-695 128-297 (328)
9 4fcg_A Uncharacterized protein 99.6 3.1E-15 1.1E-19 155.2 14.7 161 527-694 104-272 (328)
10 3qfl_A MLA10; coiled-coil, (CC 99.6 1.4E-15 4.9E-20 129.7 6.4 78 9-86 1-80 (115)
11 1fnn_A CDC6P, cell division co 99.5 1.9E-12 6.3E-17 137.8 24.7 284 165-465 16-352 (389)
12 2qby_B CDC6 homolog 3, cell di 99.5 3.1E-12 1.1E-16 135.8 24.5 283 165-465 19-340 (384)
13 2v1u_A Cell division control p 99.5 2.4E-12 8.3E-17 136.7 22.2 284 165-465 18-352 (387)
14 2o6q_A Variable lymphocyte rec 99.5 8.8E-13 3E-17 132.7 16.5 158 527-693 37-198 (270)
15 2ell_A Acidic leucine-rich nuc 99.5 1.9E-13 6.6E-18 126.9 10.7 136 548-694 22-165 (168)
16 3m19_A Variable lymphocyte rec 99.5 7.2E-13 2.5E-17 131.8 15.1 154 526-687 34-191 (251)
17 1ozn_A Reticulon 4 receptor; N 99.4 1.4E-12 4.7E-17 132.4 15.9 137 548-692 78-217 (285)
18 3rfs_A Internalin B, repeat mo 99.4 1E-12 3.5E-17 132.3 14.6 158 526-692 62-222 (272)
19 3m19_A Variable lymphocyte rec 99.4 1.5E-12 5.2E-17 129.4 15.5 136 549-693 34-172 (251)
20 2qby_A CDC6 homolog 1, cell di 99.4 4.4E-12 1.5E-16 134.7 19.7 283 165-464 19-348 (386)
21 3rgz_A Protein brassinosteroid 99.4 8.1E-13 2.8E-17 153.3 12.9 164 527-694 490-723 (768)
22 4ezg_A Putative uncharacterize 99.4 1E-12 3.5E-17 125.4 11.4 148 527-689 44-194 (197)
23 2o6s_A Variable lymphocyte rec 99.4 3.8E-12 1.3E-16 122.6 15.5 135 549-691 27-164 (208)
24 1p9a_G Platelet glycoprotein I 99.4 3.2E-12 1.1E-16 129.9 15.2 131 547-686 74-206 (290)
25 2v9t_B SLIT homolog 2 protein 99.4 2.6E-12 8.9E-17 124.9 13.8 129 550-686 32-163 (220)
26 1p9a_G Platelet glycoprotein I 99.4 2.7E-12 9.2E-17 130.5 14.3 158 526-695 30-191 (290)
27 3rfs_A Internalin B, repeat mo 99.4 3.8E-12 1.3E-16 128.2 15.0 155 528-694 42-199 (272)
28 1ozn_A Reticulon 4 receptor; N 99.4 3.6E-12 1.2E-16 129.4 14.7 158 525-691 30-192 (285)
29 3e6j_A Variable lymphocyte rec 99.4 4.3E-12 1.5E-16 124.2 14.7 130 549-687 39-171 (229)
30 2o6q_A Variable lymphocyte rec 99.4 6.8E-12 2.3E-16 126.2 16.6 153 526-686 60-216 (270)
31 1ogq_A PGIP-2, polygalacturona 99.4 1.1E-12 3.6E-17 135.2 10.7 131 548-686 74-232 (313)
32 1ogq_A PGIP-2, polygalacturona 99.4 9.6E-13 3.3E-17 135.5 10.0 138 550-694 50-193 (313)
33 2xwt_C Thyrotropin receptor; s 99.4 5.5E-12 1.9E-16 124.4 14.7 158 526-694 54-223 (239)
34 3zyj_A Leucine-rich repeat-con 99.4 5.6E-12 1.9E-16 136.4 16.1 139 548-693 134-272 (440)
35 3zyi_A Leucine-rich repeat-con 99.4 7.5E-12 2.6E-16 135.9 16.1 138 549-693 146-283 (452)
36 2v70_A SLIT-2, SLIT homolog 2 99.4 5.8E-12 2E-16 122.4 13.6 131 549-687 31-165 (220)
37 2je0_A Acidic leucine-rich nuc 99.4 1.3E-12 4.4E-17 118.6 8.4 126 549-684 16-149 (149)
38 4ezg_A Putative uncharacterize 99.3 8E-12 2.7E-16 119.2 13.6 132 548-692 42-175 (197)
39 3rgz_A Protein brassinosteroid 99.3 3.3E-12 1.1E-16 148.2 12.1 161 527-694 394-557 (768)
40 2o6s_A Variable lymphocyte rec 99.3 7.3E-12 2.5E-16 120.6 12.0 156 526-695 27-185 (208)
41 3e6j_A Variable lymphocyte rec 99.3 1.2E-11 4.1E-16 121.0 13.4 121 563-694 31-153 (229)
42 3zyi_A Leucine-rich repeat-con 99.3 9.2E-12 3.1E-16 135.2 13.7 156 526-691 74-233 (452)
43 2xwt_C Thyrotropin receptor; s 99.3 1.2E-11 4.2E-16 121.9 13.4 161 526-694 30-198 (239)
44 2z62_A TOLL-like receptor 4, v 99.3 1.3E-11 4.4E-16 124.6 13.5 157 527-687 52-236 (276)
45 2xot_A Amphoterin-induced prot 99.3 1.2E-11 4.1E-16 130.0 13.6 132 552-692 41-179 (361)
46 3zyj_A Leucine-rich repeat-con 99.3 1.2E-11 4.2E-16 133.7 13.7 158 525-692 62-223 (440)
47 1h6u_A Internalin H; cell adhe 99.3 1.9E-11 6.4E-16 125.5 13.8 150 526-692 62-211 (308)
48 1h6t_A Internalin B; cell adhe 99.3 2.2E-11 7.4E-16 123.8 14.0 150 526-692 67-216 (291)
49 3oja_B Anopheles plasmodium-re 99.3 1.9E-11 6.6E-16 137.5 14.9 159 526-692 122-340 (597)
50 4g8a_A TOLL-like receptor 4; l 99.3 5.8E-12 2E-16 143.0 10.7 135 550-692 52-189 (635)
51 2z66_A Variable lymphocyte rec 99.3 1E-11 3.4E-16 127.4 11.4 154 527-686 101-259 (306)
52 2z62_A TOLL-like receptor 4, v 99.3 1.3E-11 4.5E-16 124.5 11.9 135 526-668 27-165 (276)
53 2z66_A Variable lymphocyte rec 99.3 7.3E-12 2.5E-16 128.5 9.9 137 548-692 99-240 (306)
54 3vq2_A TLR4, TOLL-like recepto 99.3 2E-11 6.8E-16 137.9 14.4 130 550-686 32-164 (606)
55 1h6t_A Internalin B; cell adhe 99.3 2.4E-11 8.1E-16 123.5 13.4 148 528-692 47-194 (291)
56 1njg_A DNA polymerase III subu 99.3 1.1E-10 3.7E-15 115.1 17.9 192 165-367 22-230 (250)
57 4b8c_D Glucose-repressible alc 99.3 3.9E-12 1.3E-16 145.8 8.0 118 565-692 215-333 (727)
58 1xku_A Decorin; proteoglycan, 99.3 5.6E-11 1.9E-15 123.3 16.0 88 601-694 192-281 (330)
59 3o6n_A APL1; leucine-rich repe 99.3 3.6E-11 1.2E-15 127.8 14.9 158 527-692 117-334 (390)
60 1w8a_A SLIT protein; signaling 99.3 1.5E-11 5E-16 116.8 10.6 117 564-688 21-139 (192)
61 2chg_A Replication factor C sm 99.3 8.8E-11 3E-15 114.1 16.4 179 165-365 16-204 (226)
62 1a9n_A U2A', U2A'; complex (nu 99.3 1.1E-11 3.9E-16 115.8 9.5 128 548-686 17-151 (176)
63 4ecn_A Leucine-rich repeat pro 99.3 1.1E-11 3.7E-16 143.6 11.3 161 526-694 447-637 (876)
64 2id5_A Lingo-1, leucine rich r 99.3 2.5E-11 8.5E-16 132.8 13.5 88 600-692 151-240 (477)
65 4eco_A Uncharacterized protein 99.3 7.4E-12 2.5E-16 141.9 9.4 125 566-692 198-347 (636)
66 1wwl_A Monocyte differentiatio 99.2 2.1E-11 7.1E-16 125.4 11.6 159 525-693 119-291 (312)
67 3vq2_A TLR4, TOLL-like recepto 99.2 1.1E-11 3.7E-16 140.0 10.3 132 548-686 422-556 (606)
68 4glp_A Monocyte differentiatio 99.2 1.7E-11 5.9E-16 125.9 10.7 162 526-692 116-288 (310)
69 2id5_A Lingo-1, leucine rich r 99.2 2.8E-11 9.7E-16 132.4 13.1 151 526-684 31-185 (477)
70 2z80_A TOLL-like receptor 2, v 99.2 1.6E-11 5.4E-16 128.7 10.6 158 527-692 52-214 (353)
71 3oja_B Anopheles plasmodium-re 99.2 1.7E-11 5.9E-16 137.9 11.5 126 549-684 74-201 (597)
72 2z80_A TOLL-like receptor 2, v 99.2 1.4E-11 4.8E-16 129.2 9.7 159 526-692 75-238 (353)
73 4eco_A Uncharacterized protein 99.2 7.5E-11 2.6E-15 133.6 16.4 159 528-695 403-585 (636)
74 2v9t_B SLIT homolog 2 protein 99.2 4.5E-11 1.5E-15 116.1 12.6 121 564-694 24-146 (220)
75 4ecn_A Leucine-rich repeat pro 99.2 6.5E-11 2.2E-15 137.1 16.0 139 548-695 671-825 (876)
76 1h6u_A Internalin H; cell adhe 99.2 6.6E-11 2.3E-15 121.3 14.4 152 525-693 83-234 (308)
77 3o6n_A APL1; leucine-rich repe 99.2 2.9E-11 1E-15 128.6 12.0 128 548-685 67-196 (390)
78 3oja_A Leucine-rich immune mol 99.2 1.6E-11 5.6E-16 134.2 9.8 151 527-688 99-250 (487)
79 2ft3_A Biglycan; proteoglycan, 99.2 8.5E-11 2.9E-15 122.0 14.8 160 526-693 101-281 (332)
80 3o53_A Protein LRIM1, AGAP0063 99.2 1.9E-11 6.4E-16 126.1 9.5 151 527-687 99-249 (317)
81 1m9s_A Internalin B; cell inva 99.2 5.3E-11 1.8E-15 133.0 13.6 150 526-692 64-213 (605)
82 1m9s_A Internalin B; cell inva 99.2 3.9E-11 1.3E-15 134.1 12.2 130 547-692 62-191 (605)
83 1a9n_A U2A', U2A'; complex (nu 99.2 3.1E-11 1.1E-15 112.8 9.5 114 569-693 14-130 (176)
84 3oja_A Leucine-rich immune mol 99.2 2E-11 7E-16 133.5 9.5 90 597-694 140-232 (487)
85 2v70_A SLIT-2, SLIT homolog 2 99.2 8.1E-11 2.8E-15 114.3 12.7 120 564-692 24-145 (220)
86 1wwl_A Monocyte differentiatio 99.2 2E-11 6.9E-16 125.5 8.8 151 527-686 149-307 (312)
87 3v47_A TOLL-like receptor 5B a 99.2 3.6E-11 1.2E-15 130.6 11.2 159 526-692 29-196 (455)
88 2xot_A Amphoterin-induced prot 99.2 4.4E-11 1.5E-15 125.6 11.2 157 525-686 37-200 (361)
89 3v47_A TOLL-like receptor 5B a 99.2 5.7E-11 2E-15 129.1 12.1 137 548-692 273-412 (455)
90 2z63_A TOLL-like receptor 4, v 99.2 6.4E-11 2.2E-15 132.6 12.7 161 525-693 26-194 (570)
91 1xku_A Decorin; proteoglycan, 99.2 1.6E-10 5.6E-15 119.7 14.6 151 527-691 52-207 (330)
92 3j0a_A TOLL-like receptor 5; m 99.2 1.3E-10 4.3E-15 136.3 15.3 160 525-691 22-190 (844)
93 2ell_A Acidic leucine-rich nuc 99.2 7.1E-11 2.4E-15 109.4 10.6 114 572-693 22-137 (168)
94 2z81_A CD282 antigen, TOLL-lik 99.2 4.9E-11 1.7E-15 132.9 10.9 153 527-686 26-183 (549)
95 1xeu_A Internalin C; cellular 99.2 1.1E-10 3.6E-15 116.8 12.1 147 528-692 42-188 (263)
96 4glp_A Monocyte differentiatio 99.2 2.4E-11 8.3E-16 124.8 7.6 150 526-686 144-305 (310)
97 2ft3_A Biglycan; proteoglycan, 99.2 1.5E-10 5.2E-15 120.1 13.7 103 550-661 54-157 (332)
98 3t6q_A CD180 antigen; protein- 99.2 1E-10 3.5E-15 132.0 13.4 161 525-693 31-196 (606)
99 2z63_A TOLL-like receptor 4, v 99.2 7.9E-11 2.7E-15 131.9 12.2 134 550-691 28-164 (570)
100 3t6q_A CD180 antigen; protein- 99.2 8.4E-11 2.9E-15 132.8 12.5 134 548-686 423-558 (606)
101 2je0_A Acidic leucine-rich nuc 99.2 4.9E-11 1.7E-15 108.1 8.5 114 572-693 15-130 (149)
102 2wfh_A SLIT homolog 2 protein 99.2 1.8E-10 6.2E-15 109.2 12.6 111 565-686 24-137 (193)
103 2z7x_B TOLL-like receptor 1, v 99.2 1.3E-10 4.4E-15 128.6 13.3 136 548-693 322-461 (520)
104 2z81_A CD282 antigen, TOLL-lik 99.2 5.2E-11 1.8E-15 132.7 9.9 154 526-686 49-207 (549)
105 1ziw_A TOLL-like receptor 3; i 99.2 1.3E-10 4.4E-15 133.1 13.3 160 525-693 23-188 (680)
106 3j0a_A TOLL-like receptor 5; m 99.2 1.8E-10 6.2E-15 135.0 14.6 139 548-692 22-165 (844)
107 1ziw_A TOLL-like receptor 3; i 99.1 1.2E-10 4.2E-15 133.3 12.5 130 550-686 25-156 (680)
108 4b8c_D Glucose-repressible alc 99.1 1.6E-11 5.5E-16 140.7 4.9 137 548-694 222-360 (727)
109 3a79_B TLR6, VLRB.59, TOLL-lik 99.1 2.6E-10 8.8E-15 127.4 14.1 135 548-693 351-490 (562)
110 4fmz_A Internalin; leucine ric 99.1 2.5E-10 8.7E-15 119.2 12.4 126 548-686 219-344 (347)
111 4fmz_A Internalin; leucine ric 99.1 2.4E-10 8.3E-15 119.3 12.1 151 527-692 177-327 (347)
112 2o6r_A Variable lymphocyte rec 99.1 4.1E-10 1.4E-14 105.2 12.0 106 574-687 28-136 (177)
113 1dce_A Protein (RAB geranylger 99.1 2.3E-10 7.7E-15 127.1 11.4 104 576-692 443-549 (567)
114 1hqc_A RUVB; extended AAA-ATPa 99.1 4.3E-09 1.5E-13 108.6 19.5 170 165-368 11-214 (324)
115 3o53_A Protein LRIM1, AGAP0063 99.1 4.9E-11 1.7E-15 122.9 4.7 154 526-689 119-276 (317)
116 2z7x_B TOLL-like receptor 1, v 99.1 6.1E-10 2.1E-14 123.1 13.3 153 526-688 323-481 (520)
117 1xeu_A Internalin C; cellular 99.1 5.2E-10 1.8E-14 111.7 11.2 127 548-691 39-165 (263)
118 4g8a_A TOLL-like receptor 4; l 99.1 2.6E-10 8.9E-15 129.3 10.0 133 548-686 443-578 (635)
119 3a79_B TLR6, VLRB.59, TOLL-lik 99.0 6.2E-10 2.1E-14 124.3 12.5 153 526-688 352-510 (562)
120 1dce_A Protein (RAB geranylger 99.0 4.2E-10 1.4E-14 124.9 10.4 120 552-682 443-567 (567)
121 2r9u_A Variable lymphocyte rec 99.0 6.6E-10 2.3E-14 103.4 10.0 81 601-686 33-116 (174)
122 3bz5_A Internalin-J, INLJ; leu 99.0 1.2E-09 4.1E-14 118.3 13.4 79 597-686 123-202 (457)
123 3bz5_A Internalin-J, INLJ; leu 99.0 7.8E-10 2.7E-14 119.8 11.8 129 548-692 168-303 (457)
124 1sxj_B Activator 1 37 kDa subu 99.0 2.2E-09 7.4E-14 110.8 14.0 178 165-365 20-210 (323)
125 1ds9_A Outer arm dynein; leuci 99.0 1.4E-11 4.7E-16 117.7 -2.5 109 566-686 40-151 (198)
126 2ast_B S-phase kinase-associat 99.0 5.8E-11 2E-15 123.4 2.0 155 526-686 92-258 (336)
127 1o6v_A Internalin A; bacterial 99.0 1.6E-09 5.4E-14 118.0 13.4 150 527-693 243-392 (466)
128 2wfh_A SLIT homolog 2 protein 99.0 1.7E-09 5.9E-14 102.4 11.5 106 577-694 13-120 (193)
129 2ast_B S-phase kinase-associat 99.0 1.4E-10 4.9E-15 120.5 3.8 152 526-685 117-282 (336)
130 3g39_A Variable lymphocyte rec 99.0 1.4E-09 4.7E-14 100.8 10.1 81 601-686 30-113 (170)
131 3cvr_A Invasion plasmid antige 99.0 2.2E-09 7.6E-14 118.5 12.3 149 526-692 99-247 (571)
132 4ay9_X Follicle-stimulating ho 99.0 5.1E-09 1.8E-13 109.3 14.3 126 560-694 90-220 (350)
133 2o6r_A Variable lymphocyte rec 99.0 4E-09 1.4E-13 98.4 12.1 113 549-668 27-141 (177)
134 3cvr_A Invasion plasmid antige 99.0 1.7E-09 5.7E-14 119.5 10.9 139 527-694 80-225 (571)
135 1jl5_A Outer protein YOPM; leu 98.9 7.9E-09 2.7E-13 111.8 14.5 143 527-692 111-253 (454)
136 1ds9_A Outer arm dynein; leuci 98.9 7.2E-11 2.5E-15 112.6 -2.0 124 548-681 46-180 (198)
137 1o6v_A Internalin A; bacterial 98.9 5.4E-09 1.8E-13 113.8 12.4 146 527-688 221-366 (466)
138 1iqp_A RFCS; clamp loader, ext 98.9 5.6E-09 1.9E-13 107.9 11.8 176 165-366 24-213 (327)
139 1w8a_A SLIT protein; signaling 98.9 5.1E-09 1.7E-13 99.1 10.3 103 577-691 11-117 (192)
140 3g06_A SSPH2 (leucine-rich rep 98.9 6E-09 2.1E-13 116.5 11.8 78 601-689 221-298 (622)
141 3g06_A SSPH2 (leucine-rich rep 98.9 2.5E-08 8.6E-13 111.5 16.3 39 650-693 240-278 (622)
142 4ay9_X Follicle-stimulating ho 98.8 9.7E-09 3.3E-13 107.2 11.4 161 526-694 29-196 (350)
143 2ca6_A RAN GTPase-activating p 98.8 1E-09 3.5E-14 116.4 2.3 136 550-687 159-315 (386)
144 1jl5_A Outer protein YOPM; leu 98.8 1.9E-08 6.4E-13 108.8 12.2 142 526-693 90-232 (454)
145 2ca6_A RAN GTPase-activating p 98.8 1.2E-09 4E-14 115.9 2.2 156 526-686 93-285 (386)
146 2r9u_A Variable lymphocyte rec 98.8 2E-08 6.8E-13 93.3 10.0 96 564-669 25-122 (174)
147 3te6_A Regulatory protein SIR3 98.8 4.7E-08 1.6E-12 98.8 12.6 165 167-334 21-213 (318)
148 1jr3_A DNA polymerase III subu 98.7 1.3E-07 4.6E-12 99.4 16.4 185 166-365 16-221 (373)
149 3g39_A Variable lymphocyte rec 98.7 2.5E-08 8.5E-13 92.3 8.9 89 565-662 23-113 (170)
150 2chq_A Replication factor C sm 98.7 4.5E-08 1.5E-12 100.6 10.6 174 165-364 16-203 (319)
151 1sxj_D Activator 1 41 kDa subu 98.6 3.7E-07 1.3E-11 95.2 15.8 188 165-364 36-234 (353)
152 2ifg_A High affinity nerve gro 98.6 5.1E-08 1.8E-12 101.5 8.7 92 562-662 20-114 (347)
153 3goz_A Leucine-rich repeat-con 98.6 2.5E-08 8.5E-13 104.6 4.9 164 525-690 20-210 (362)
154 3goz_A Leucine-rich repeat-con 98.6 2.1E-08 7E-13 105.2 4.0 163 528-692 52-241 (362)
155 3pfi_A Holliday junction ATP-d 98.5 1.5E-06 5.2E-11 89.9 16.6 166 165-365 28-227 (338)
156 1sxj_A Activator 1 95 kDa subu 98.5 4.9E-07 1.7E-11 99.1 13.0 184 165-364 38-252 (516)
157 1z7x_W Ribonuclease inhibitor; 98.5 1.9E-08 6.5E-13 109.2 1.6 35 602-636 86-126 (461)
158 2ifg_A High affinity nerve gro 98.5 2.1E-07 7.1E-12 96.9 8.9 85 549-636 30-116 (347)
159 3bos_A Putative DNA replicatio 98.5 3.2E-07 1.1E-11 89.9 9.5 166 166-365 28-217 (242)
160 1z7x_W Ribonuclease inhibitor; 98.4 2.7E-08 9.1E-13 108.1 0.7 135 548-686 225-381 (461)
161 1sxj_E Activator 1 40 kDa subu 98.4 1.2E-06 4E-11 91.5 11.9 187 165-365 13-237 (354)
162 1jbk_A CLPB protein; beta barr 98.4 8.1E-07 2.8E-11 83.5 9.6 45 166-210 22-66 (195)
163 1d2n_A N-ethylmaleimide-sensit 98.4 6.3E-06 2.2E-10 82.3 16.6 185 166-382 33-260 (272)
164 3u61_B DNA polymerase accessor 98.4 3.9E-06 1.3E-10 86.3 14.6 167 165-362 25-213 (324)
165 3h4m_A Proteasome-activating n 98.4 7.1E-06 2.4E-10 82.6 16.0 171 165-364 16-230 (285)
166 3pvs_A Replication-associated 98.3 1.3E-05 4.4E-10 85.6 17.5 170 165-364 25-214 (447)
167 2z4s_A Chromosomal replication 98.3 4.4E-06 1.5E-10 89.4 13.3 175 167-364 106-305 (440)
168 1a5t_A Delta prime, HOLB; zinc 98.3 1.4E-05 4.7E-10 82.4 16.4 162 172-364 8-204 (334)
169 2p1m_B Transport inhibitor res 98.3 1.8E-07 6.2E-12 105.0 1.7 134 549-685 104-245 (594)
170 3un9_A NLR family member X1; l 98.2 1.1E-07 3.8E-12 99.6 -0.7 136 550-686 101-250 (372)
171 2qz4_A Paraplegin; AAA+, SPG7, 98.2 5.7E-05 2E-09 74.7 18.6 172 166-364 6-221 (262)
172 3sb4_A Hypothetical leucine ri 98.2 2.7E-06 9.3E-11 87.7 8.9 87 600-694 225-315 (329)
173 3ogk_B Coronatine-insensitive 98.2 1.3E-06 4.6E-11 97.8 6.8 131 548-683 218-350 (592)
174 3uk6_A RUVB-like 2; hexameric 98.2 5.4E-05 1.8E-09 79.2 18.4 193 165-364 43-302 (368)
175 2p1m_B Transport inhibitor res 98.2 3.7E-07 1.3E-11 102.5 1.6 116 570-688 101-224 (594)
176 1sxj_C Activator 1 40 kDa subu 98.2 1.4E-05 4.7E-10 82.7 13.1 171 166-362 25-209 (340)
177 3d8b_A Fidgetin-like protein 1 98.1 3.1E-05 1.1E-09 80.5 15.7 173 166-366 84-296 (357)
178 3ogk_B Coronatine-insensitive 98.1 8.1E-07 2.8E-11 99.6 3.8 83 549-631 163-251 (592)
179 1xwi_A SKD1 protein; VPS4B, AA 98.1 4.7E-05 1.6E-09 77.8 16.5 174 166-366 12-224 (322)
180 3un9_A NLR family member X1; l 98.1 1.9E-07 6.4E-12 97.9 -1.7 136 550-689 72-224 (372)
181 2ra8_A Uncharacterized protein 98.1 1.3E-06 4.6E-11 90.7 4.5 133 548-686 170-318 (362)
182 3eie_A Vacuolar protein sortin 98.1 1.7E-05 5.8E-10 81.3 12.3 173 166-366 18-229 (322)
183 2p65_A Hypothetical protein PF 98.1 1E-05 3.5E-10 75.3 9.9 44 166-209 22-65 (187)
184 3cf0_A Transitional endoplasmi 98.1 3.4E-05 1.2E-09 78.2 13.8 166 166-360 15-223 (301)
185 1l8q_A Chromosomal replication 98.1 4E-05 1.4E-09 78.6 14.1 165 169-360 15-203 (324)
186 2qp9_X Vacuolar protein sortin 98.0 2.8E-05 9.5E-10 80.8 12.5 172 166-365 51-261 (355)
187 4b4t_J 26S protease regulatory 98.0 0.00013 4.4E-09 75.6 17.0 164 166-358 148-354 (405)
188 3n70_A Transport activator; si 98.0 1.9E-05 6.4E-10 70.5 9.4 109 167-306 2-116 (145)
189 3vfd_A Spastin; ATPase, microt 98.0 6.6E-05 2.3E-09 79.1 15.1 174 165-366 114-327 (389)
190 3b9p_A CG5977-PA, isoform A; A 98.0 0.00013 4.3E-09 73.8 16.6 172 166-365 21-233 (297)
191 3e4g_A ATP synthase subunit S, 98.0 3.7E-06 1.3E-10 76.8 4.0 86 574-666 61-154 (176)
192 2zan_A Vacuolar protein sortin 97.9 0.00022 7.5E-09 76.3 17.8 173 166-365 134-345 (444)
193 4b4t_L 26S protease subunit RP 97.9 0.00032 1.1E-08 73.9 18.3 164 166-358 181-387 (437)
194 3pxg_A Negative regulator of g 97.9 3.1E-05 1.1E-09 83.5 11.0 140 166-333 180-339 (468)
195 3syl_A Protein CBBX; photosynt 97.9 4E-05 1.4E-09 78.0 11.1 146 167-333 32-218 (309)
196 3ec2_A DNA replication protein 97.9 4E-05 1.4E-09 71.2 9.8 112 174-306 22-143 (180)
197 4b4t_H 26S protease regulatory 97.9 0.00032 1.1E-08 73.7 16.5 163 166-357 209-414 (467)
198 3e4g_A ATP synthase subunit S, 97.8 1.5E-05 5.2E-10 72.7 5.1 80 551-633 62-149 (176)
199 2gno_A DNA polymerase III, gam 97.8 0.00016 5.5E-09 73.0 13.1 141 170-332 1-152 (305)
200 1io0_A Tropomodulin; LRR prote 97.8 6.9E-06 2.3E-10 76.8 2.8 119 566-686 28-162 (185)
201 1qvr_A CLPB protein; coiled co 97.8 9.8E-05 3.4E-09 86.0 12.9 171 165-355 169-369 (854)
202 2w58_A DNAI, primosome compone 97.8 5.6E-05 1.9E-09 71.6 8.8 117 167-305 26-158 (202)
203 4b4t_I 26S protease regulatory 97.7 0.00059 2E-08 70.9 16.1 163 166-357 182-387 (437)
204 1ofh_A ATP-dependent HSL prote 97.7 0.00016 5.6E-09 73.3 12.0 57 166-228 15-85 (310)
205 4b4t_M 26S protease regulatory 97.7 0.00032 1.1E-08 73.7 14.3 163 166-357 181-386 (434)
206 3co5_A Putative two-component 97.7 7.4E-05 2.5E-09 66.4 7.5 43 167-209 5-49 (143)
207 4b4t_K 26S protease regulatory 97.7 0.00051 1.7E-08 72.2 14.8 163 166-357 172-378 (428)
208 3sb4_A Hypothetical leucine ri 97.7 5.6E-05 1.9E-09 77.7 7.4 101 572-682 224-328 (329)
209 3pxi_A Negative regulator of g 97.7 0.00015 5E-09 83.5 11.5 140 166-333 180-339 (758)
210 3hu3_A Transitional endoplasmi 97.6 0.00064 2.2E-08 73.3 15.1 170 166-364 204-414 (489)
211 2ra8_A Uncharacterized protein 97.6 6.9E-05 2.4E-09 77.7 7.1 115 565-689 163-292 (362)
212 3rw6_A Nuclear RNA export fact 97.6 5.2E-05 1.8E-09 74.6 5.7 82 598-683 167-259 (267)
213 1r6b_X CLPA protein; AAA+, N-t 97.6 0.00059 2E-08 78.5 15.3 150 166-332 186-362 (758)
214 1in4_A RUVB, holliday junction 97.6 0.0045 1.5E-07 63.4 19.8 164 166-364 25-222 (334)
215 1lv7_A FTSH; alpha/beta domain 97.5 0.0013 4.3E-08 64.8 15.0 169 166-363 12-223 (257)
216 2r62_A Cell division protease 97.5 7.9E-05 2.7E-09 74.1 6.2 44 166-209 11-66 (268)
217 3cf2_A TER ATPase, transitiona 97.5 0.00091 3.1E-08 75.8 15.0 164 166-358 204-407 (806)
218 4fcw_A Chaperone protein CLPB; 97.5 0.00018 6.2E-09 73.1 8.4 61 167-230 18-87 (311)
219 2kjq_A DNAA-related protein; s 97.4 9.9E-05 3.4E-09 66.0 4.4 58 165-228 17-74 (149)
220 2ce7_A Cell division protein F 97.4 0.0026 9.1E-08 67.9 16.1 164 166-358 16-221 (476)
221 3rw6_A Nuclear RNA export fact 97.4 0.00019 6.6E-09 70.5 6.4 87 571-659 167-259 (267)
222 1io0_A Tropomodulin; LRR prote 97.4 5.5E-05 1.9E-09 70.5 2.2 115 548-662 34-162 (185)
223 3t15_A Ribulose bisphosphate c 97.3 0.0025 8.6E-08 63.9 13.5 23 187-209 36-58 (293)
224 4fdw_A Leucine rich hypothetic 97.2 0.0018 6.3E-08 68.1 12.2 87 597-692 267-361 (401)
225 3m6a_A ATP-dependent protease 97.1 0.0037 1.3E-07 68.5 13.6 44 166-209 81-130 (543)
226 1ojl_A Transcriptional regulat 97.1 0.002 6.8E-08 65.0 10.5 43 167-209 3-47 (304)
227 2c9o_A RUVB-like 1; hexameric 97.1 0.008 2.7E-07 64.4 15.8 45 166-210 37-86 (456)
228 3pxi_A Negative regulator of g 97.0 0.0023 7.8E-08 73.5 11.0 141 166-331 491-674 (758)
229 1ypw_A Transitional endoplasmi 96.9 0.0071 2.4E-07 69.5 14.3 164 166-358 204-407 (806)
230 2qgz_A Helicase loader, putati 96.8 0.00063 2.2E-08 68.8 4.2 51 174-227 136-190 (308)
231 2dhr_A FTSH; AAA+ protein, hex 96.8 0.034 1.2E-06 59.7 17.2 165 165-358 30-236 (499)
232 1iy2_A ATP-dependent metallopr 96.8 0.05 1.7E-06 53.8 17.4 165 165-358 39-245 (278)
233 2cvh_A DNA repair and recombin 96.7 0.0053 1.8E-07 58.5 9.6 44 187-236 20-63 (220)
234 1r6b_X CLPA protein; AAA+, N-t 96.6 0.0038 1.3E-07 71.8 9.2 106 166-285 458-572 (758)
235 4fdw_A Leucine rich hypothetic 96.5 0.015 5E-07 61.2 12.2 126 550-685 248-380 (401)
236 1v5w_A DMC1, meiotic recombina 96.5 0.015 5.3E-07 59.6 11.9 58 187-245 122-182 (343)
237 2z43_A DNA repair and recombin 96.5 0.0074 2.5E-07 61.4 9.1 58 187-245 107-167 (324)
238 1n0w_A DNA repair protein RAD5 96.4 0.0076 2.6E-07 58.3 8.6 58 187-245 24-84 (243)
239 1g5t_A COB(I)alamin adenosyltr 96.3 0.0067 2.3E-07 56.0 7.1 118 187-307 28-164 (196)
240 2vhj_A Ntpase P4, P4; non- hyd 96.3 0.0033 1.1E-07 62.8 5.1 34 187-226 123-156 (331)
241 2x8a_A Nuclear valosin-contain 96.3 0.013 4.4E-07 58.0 9.4 43 167-209 11-66 (274)
242 2i1q_A DNA repair and recombin 96.3 0.0089 3.1E-07 60.8 8.5 58 187-245 98-168 (322)
243 2bjv_A PSP operon transcriptio 96.2 0.0054 1.9E-07 60.5 6.4 60 167-229 7-68 (265)
244 3hr8_A Protein RECA; alpha and 96.2 0.015 5E-07 59.6 9.4 86 187-282 61-151 (356)
245 3io5_A Recombination and repai 96.2 0.014 4.9E-07 58.0 8.9 87 188-282 29-123 (333)
246 2b8t_A Thymidine kinase; deoxy 96.1 0.0024 8.2E-08 60.9 2.8 111 186-306 11-126 (223)
247 2w0m_A SSO2452; RECA, SSPF, un 96.1 0.022 7.6E-07 54.5 9.8 47 187-238 23-69 (235)
248 1qvr_A CLPB protein; coiled co 96.0 0.0042 1.4E-07 72.2 4.9 43 167-209 559-610 (854)
249 3dm5_A SRP54, signal recogniti 95.9 0.066 2.3E-06 56.2 13.1 24 186-209 99-122 (443)
250 1rz3_A Hypothetical protein rb 95.8 0.0066 2.2E-07 57.1 4.5 39 171-209 3-44 (201)
251 1sky_E F1-ATPase, F1-ATP synth 95.8 0.02 6.9E-07 60.4 8.3 101 178-280 141-255 (473)
252 1xp8_A RECA protein, recombina 95.7 0.031 1.1E-06 57.6 9.2 84 187-280 74-162 (366)
253 2zr9_A Protein RECA, recombina 95.7 0.029 9.9E-07 57.5 8.9 85 187-281 61-150 (349)
254 1u94_A RECA protein, recombina 95.6 0.025 8.4E-07 58.1 8.2 84 187-280 63-151 (356)
255 1vma_A Cell division protein F 95.6 0.022 7.6E-07 57.1 7.5 39 186-227 103-141 (306)
256 4a74_A DNA repair and recombin 95.5 0.044 1.5E-06 52.4 9.3 47 187-233 25-74 (231)
257 1jr3_D DNA polymerase III, del 95.5 0.18 6.2E-06 51.5 14.3 159 177-363 8-183 (343)
258 1qhx_A CPT, protein (chloramph 95.5 0.0067 2.3E-07 55.6 3.1 22 188-209 4-25 (178)
259 3ice_A Transcription terminati 95.5 0.012 4.2E-07 60.0 5.1 101 177-280 163-271 (422)
260 3lda_A DNA repair protein RAD5 95.5 0.036 1.2E-06 57.8 8.9 58 187-245 178-238 (400)
261 2px0_A Flagellar biosynthesis 95.4 0.053 1.8E-06 54.1 9.5 86 187-279 105-191 (296)
262 3c8u_A Fructokinase; YP_612366 95.3 0.01 3.4E-07 56.1 3.8 35 175-209 8-44 (208)
263 2xxa_A Signal recognition part 95.3 0.038 1.3E-06 58.3 8.6 41 186-228 99-139 (433)
264 3lw7_A Adenylate kinase relate 95.2 0.0089 3E-07 54.4 3.1 20 188-207 2-21 (179)
265 3bh0_A DNAB-like replicative h 95.2 0.1 3.5E-06 52.7 11.2 52 187-243 68-119 (315)
266 3rfe_A Platelet glycoprotein I 95.2 0.027 9.1E-07 48.6 5.8 35 602-636 32-68 (130)
267 2r44_A Uncharacterized protein 95.2 0.01 3.6E-07 60.6 3.8 142 167-333 28-199 (331)
268 3kb2_A SPBC2 prophage-derived 95.2 0.0092 3.2E-07 54.2 3.0 22 188-209 2-23 (173)
269 1zp6_A Hypothetical protein AT 95.2 0.012 4E-07 54.6 3.7 24 186-209 8-31 (191)
270 1ly1_A Polynucleotide kinase; 95.1 0.012 3.9E-07 54.0 3.4 22 188-209 3-24 (181)
271 3uie_A Adenylyl-sulfate kinase 95.1 0.014 4.7E-07 54.7 3.9 27 183-209 21-47 (200)
272 1kgd_A CASK, peripheral plasma 95.1 0.011 3.7E-07 54.5 3.1 23 187-209 5-27 (180)
273 3nbx_X ATPase RAVA; AAA+ ATPas 95.1 0.018 6.2E-07 61.9 5.2 41 167-209 23-63 (500)
274 2ck3_D ATP synthase subunit be 95.0 0.14 4.8E-06 53.9 11.6 102 177-280 142-263 (482)
275 3umf_A Adenylate kinase; rossm 95.0 0.016 5.4E-07 54.9 4.1 24 186-209 28-51 (217)
276 3kl4_A SRP54, signal recogniti 95.0 0.04 1.4E-06 57.8 7.6 93 186-281 96-190 (433)
277 1g8p_A Magnesium-chelatase 38 95.0 0.0097 3.3E-07 61.2 2.8 44 166-209 24-67 (350)
278 3vaa_A Shikimate kinase, SK; s 95.0 0.012 4E-07 55.2 3.1 23 187-209 25-47 (199)
279 1ixz_A ATP-dependent metallopr 94.9 0.03 1E-06 54.7 5.9 164 166-358 16-221 (254)
280 1j8m_F SRP54, signal recogniti 94.9 0.037 1.3E-06 55.3 6.6 92 187-281 98-191 (297)
281 1ex7_A Guanylate kinase; subst 94.9 0.011 3.6E-07 54.6 2.4 22 188-209 2-23 (186)
282 1kag_A SKI, shikimate kinase I 94.9 0.011 3.7E-07 53.8 2.5 22 188-209 5-26 (173)
283 1pzn_A RAD51, DNA repair and r 94.9 0.094 3.2E-06 53.7 9.8 56 187-243 131-189 (349)
284 3trf_A Shikimate kinase, SK; a 94.8 0.014 4.6E-07 53.9 3.0 23 187-209 5-27 (185)
285 4eun_A Thermoresistant glucoki 94.8 0.015 5.1E-07 54.5 3.3 25 185-209 27-51 (200)
286 2ffh_A Protein (FFH); SRP54, s 94.8 0.033 1.1E-06 58.4 6.3 38 187-227 98-135 (425)
287 2hf9_A Probable hydrogenase ni 94.8 0.022 7.5E-07 54.4 4.6 36 175-210 26-61 (226)
288 3cf2_A TER ATPase, transitiona 94.7 0.058 2E-06 61.1 8.4 91 166-281 477-581 (806)
289 3tau_A Guanylate kinase, GMP k 94.7 0.017 5.8E-07 54.5 3.5 24 186-209 7-30 (208)
290 3hws_A ATP-dependent CLP prote 94.7 0.02 6.8E-07 59.3 4.3 43 167-209 16-73 (363)
291 1odf_A YGR205W, hypothetical 3 94.7 0.024 8.4E-07 56.4 4.7 24 186-209 30-53 (290)
292 1um8_A ATP-dependent CLP prote 94.7 0.023 7.8E-07 59.2 4.7 44 166-209 21-94 (376)
293 3tr0_A Guanylate kinase, GMP k 94.6 0.019 6.5E-07 53.9 3.5 23 187-209 7-29 (205)
294 4gp7_A Metallophosphoesterase; 94.6 0.018 6.2E-07 52.4 3.3 23 187-209 9-31 (171)
295 1nks_A Adenylate kinase; therm 94.6 0.017 5.9E-07 53.5 3.2 22 188-209 2-23 (194)
296 2rhm_A Putative kinase; P-loop 94.6 0.019 6.5E-07 53.2 3.5 23 187-209 5-27 (193)
297 3a00_A Guanylate kinase, GMP k 94.6 0.015 5E-07 53.8 2.6 22 188-209 2-23 (186)
298 3t61_A Gluconokinase; PSI-biol 94.5 0.014 4.9E-07 54.7 2.5 23 187-209 18-40 (202)
299 1knq_A Gluconate kinase; ALFA/ 94.5 0.019 6.6E-07 52.3 3.2 23 187-209 8-30 (175)
300 2wsm_A Hydrogenase expression/ 94.5 0.024 8.2E-07 53.9 3.9 38 173-210 16-53 (221)
301 1kht_A Adenylate kinase; phosp 94.4 0.019 6.4E-07 53.1 3.1 22 188-209 4-25 (192)
302 2ga8_A Hypothetical 39.9 kDa p 94.4 0.032 1.1E-06 56.6 4.8 41 169-209 2-46 (359)
303 2yvu_A Probable adenylyl-sulfa 94.4 0.018 6.2E-07 53.1 2.8 24 186-209 12-35 (186)
304 2qor_A Guanylate kinase; phosp 94.4 0.018 6E-07 54.2 2.7 23 187-209 12-34 (204)
305 3asz_A Uridine kinase; cytidin 94.4 0.023 7.7E-07 53.7 3.5 24 186-209 5-28 (211)
306 2bdt_A BH3686; alpha-beta prot 94.3 0.022 7.6E-07 52.7 3.3 22 188-209 3-24 (189)
307 4fs7_A Uncharacterized protein 94.3 0.27 9.1E-06 51.3 12.0 122 548-684 251-375 (394)
308 2j41_A Guanylate kinase; GMP, 94.3 0.023 7.8E-07 53.4 3.4 23 187-209 6-28 (207)
309 3iij_A Coilin-interacting nucl 94.3 0.017 5.8E-07 53.0 2.4 23 187-209 11-33 (180)
310 3fwy_A Light-independent proto 94.3 0.023 7.8E-07 57.3 3.5 41 185-228 46-86 (314)
311 1zuh_A Shikimate kinase; alpha 94.3 0.022 7.5E-07 51.6 3.1 23 187-209 7-29 (168)
312 2ze6_A Isopentenyl transferase 94.3 0.023 7.7E-07 55.5 3.3 22 188-209 2-23 (253)
313 1fx0_B ATP synthase beta chain 94.2 0.11 3.8E-06 54.9 8.6 101 178-280 155-276 (498)
314 1y63_A LMAJ004144AAA protein; 94.2 0.025 8.6E-07 52.1 3.4 23 187-209 10-32 (184)
315 1uf9_A TT1252 protein; P-loop, 94.2 0.026 9.1E-07 52.7 3.6 25 185-209 6-30 (203)
316 1ye8_A Protein THEP1, hypothet 94.2 0.024 8.2E-07 52.0 3.2 22 189-210 2-23 (178)
317 3ney_A 55 kDa erythrocyte memb 94.2 0.025 8.7E-07 52.5 3.3 24 186-209 18-41 (197)
318 1g41_A Heat shock protein HSLU 94.2 0.027 9.2E-07 59.3 3.9 44 166-209 15-72 (444)
319 1lvg_A Guanylate kinase, GMP k 94.2 0.02 6.7E-07 53.6 2.6 23 187-209 4-26 (198)
320 1tev_A UMP-CMP kinase; ploop, 94.2 0.026 8.7E-07 52.4 3.4 23 187-209 3-25 (196)
321 2qt1_A Nicotinamide riboside k 94.2 0.028 9.4E-07 52.9 3.6 23 187-209 21-43 (207)
322 2jaq_A Deoxyguanosine kinase; 94.2 0.023 7.9E-07 53.2 3.1 21 189-209 2-22 (205)
323 1gvn_B Zeta; postsegregational 94.2 0.038 1.3E-06 55.0 4.8 23 187-209 33-55 (287)
324 3rfe_A Platelet glycoprotein I 94.2 0.063 2.2E-06 46.2 5.6 53 604-662 11-66 (130)
325 1via_A Shikimate kinase; struc 94.1 0.02 6.8E-07 52.3 2.5 22 188-209 5-26 (175)
326 1uj2_A Uridine-cytidine kinase 94.1 0.027 9.2E-07 54.9 3.5 25 185-209 20-44 (252)
327 3e70_C DPA, signal recognition 94.1 0.099 3.4E-06 52.9 7.7 57 185-244 127-184 (328)
328 2c95_A Adenylate kinase 1; tra 94.1 0.027 9.2E-07 52.3 3.3 24 186-209 8-31 (196)
329 1ukz_A Uridylate kinase; trans 94.1 0.03 1E-06 52.5 3.6 24 186-209 14-37 (203)
330 2if2_A Dephospho-COA kinase; a 94.1 0.024 8.3E-07 53.1 3.0 22 188-209 2-23 (204)
331 1cke_A CK, MSSA, protein (cyti 94.1 0.025 8.5E-07 54.0 3.1 22 188-209 6-27 (227)
332 1jjv_A Dephospho-COA kinase; P 94.0 0.028 9.7E-07 52.8 3.3 22 188-209 3-24 (206)
333 2iyv_A Shikimate kinase, SK; t 94.0 0.02 6.9E-07 52.7 2.2 22 188-209 3-24 (184)
334 3bgw_A DNAB-like replicative h 94.0 0.15 5.2E-06 54.0 9.2 51 187-242 197-247 (444)
335 2bwj_A Adenylate kinase 5; pho 94.0 0.027 9.3E-07 52.4 3.1 23 187-209 12-34 (199)
336 3cm0_A Adenylate kinase; ATP-b 93.9 0.03 1E-06 51.6 3.3 23 187-209 4-26 (186)
337 3l0o_A Transcription terminati 93.9 0.021 7E-07 58.3 2.2 52 176-229 163-216 (427)
338 1ls1_A Signal recognition part 93.9 0.068 2.3E-06 53.4 6.1 38 187-227 98-135 (295)
339 1e6c_A Shikimate kinase; phosp 93.9 0.024 8.1E-07 51.5 2.5 22 188-209 3-24 (173)
340 1znw_A Guanylate kinase, GMP k 93.9 0.031 1.1E-06 52.6 3.3 24 186-209 19-42 (207)
341 3a4m_A L-seryl-tRNA(SEC) kinas 93.9 0.032 1.1E-06 54.7 3.5 23 187-209 4-26 (260)
342 2j37_W Signal recognition part 93.8 0.13 4.4E-06 55.2 8.4 38 187-227 101-138 (504)
343 1tue_A Replication protein E1; 93.8 0.045 1.5E-06 50.8 4.1 35 175-209 45-80 (212)
344 3aez_A Pantothenate kinase; tr 93.8 0.035 1.2E-06 55.9 3.8 24 186-209 89-112 (312)
345 2bbw_A Adenylate kinase 4, AK4 93.8 0.031 1.1E-06 54.2 3.2 23 187-209 27-49 (246)
346 2plr_A DTMP kinase, probable t 93.8 0.033 1.1E-06 52.4 3.4 23 187-209 4-26 (213)
347 1s96_A Guanylate kinase, GMP k 93.8 0.034 1.2E-06 52.8 3.4 24 186-209 15-38 (219)
348 1xjc_A MOBB protein homolog; s 93.8 0.034 1.2E-06 50.2 3.2 23 187-209 4-26 (169)
349 1qf9_A UMP/CMP kinase, protein 93.8 0.033 1.1E-06 51.5 3.2 23 187-209 6-28 (194)
350 1htw_A HI0065; nucleotide-bind 93.7 0.04 1.4E-06 49.3 3.6 25 185-209 31-55 (158)
351 2z0h_A DTMP kinase, thymidylat 93.7 0.072 2.5E-06 49.4 5.6 21 189-209 2-22 (197)
352 1z6g_A Guanylate kinase; struc 93.7 0.028 9.7E-07 53.4 2.8 23 187-209 23-45 (218)
353 2cdn_A Adenylate kinase; phosp 93.7 0.036 1.2E-06 51.8 3.5 23 187-209 20-42 (201)
354 2pt5_A Shikimate kinase, SK; a 93.7 0.034 1.1E-06 50.2 3.1 21 189-209 2-22 (168)
355 2jeo_A Uridine-cytidine kinase 93.7 0.039 1.3E-06 53.5 3.7 25 185-209 23-47 (245)
356 3tqc_A Pantothenate kinase; bi 93.6 0.035 1.2E-06 55.9 3.4 40 170-209 71-114 (321)
357 3tlx_A Adenylate kinase 2; str 93.6 0.057 1.9E-06 52.3 4.8 25 185-209 27-51 (243)
358 1pgv_A TMD-1, tropomodulin TMD 93.6 0.042 1.4E-06 50.9 3.6 117 569-685 36-167 (197)
359 2grj_A Dephospho-COA kinase; T 93.6 0.035 1.2E-06 51.5 3.0 24 186-209 11-34 (192)
360 3zvl_A Bifunctional polynucleo 93.6 0.11 3.7E-06 54.8 7.2 25 185-209 256-280 (416)
361 2vli_A Antibiotic resistance p 93.5 0.025 8.7E-07 51.9 2.0 23 187-209 5-27 (183)
362 2pbr_A DTMP kinase, thymidylat 93.5 0.035 1.2E-06 51.4 3.0 21 189-209 2-22 (195)
363 1rj9_A FTSY, signal recognitio 93.5 0.039 1.3E-06 55.3 3.4 24 186-209 101-124 (304)
364 2q6t_A DNAB replication FORK h 93.4 0.27 9.2E-06 52.2 10.1 52 187-242 200-251 (444)
365 2p5t_B PEZT; postsegregational 93.4 0.046 1.6E-06 53.3 3.8 23 187-209 32-54 (253)
366 2v3c_C SRP54, signal recogniti 93.4 0.052 1.8E-06 57.2 4.4 24 187-210 99-122 (432)
367 1aky_A Adenylate kinase; ATP:A 93.4 0.041 1.4E-06 52.3 3.3 23 187-209 4-26 (220)
368 2wwf_A Thymidilate kinase, put 93.4 0.038 1.3E-06 52.1 3.0 23 187-209 10-32 (212)
369 1nn5_A Similar to deoxythymidy 93.4 0.041 1.4E-06 51.9 3.3 23 187-209 9-31 (215)
370 4e22_A Cytidylate kinase; P-lo 93.4 0.04 1.4E-06 53.7 3.2 24 186-209 26-49 (252)
371 2pez_A Bifunctional 3'-phospho 93.2 0.052 1.8E-06 49.6 3.5 23 187-209 5-27 (179)
372 2v54_A DTMP kinase, thymidylat 93.2 0.045 1.5E-06 51.2 3.2 23 187-209 4-26 (204)
373 1q57_A DNA primase/helicase; d 93.2 0.32 1.1E-05 52.6 10.3 53 187-243 242-294 (503)
374 4a1f_A DNAB helicase, replicat 93.2 0.34 1.2E-05 49.0 9.7 52 187-243 46-97 (338)
375 1zd8_A GTP:AMP phosphotransfer 93.1 0.043 1.5E-06 52.4 3.0 23 187-209 7-29 (227)
376 3end_A Light-independent proto 93.1 0.083 2.8E-06 53.1 5.2 44 184-230 38-81 (307)
377 1m7g_A Adenylylsulfate kinase; 93.1 0.07 2.4E-06 50.3 4.4 26 184-209 22-47 (211)
378 3fb4_A Adenylate kinase; psych 93.1 0.046 1.6E-06 51.7 3.0 21 189-209 2-22 (216)
379 1gtv_A TMK, thymidylate kinase 93.0 0.025 8.6E-07 53.4 1.1 22 188-209 1-22 (214)
380 3cmu_A Protein RECA, recombina 93.0 0.19 6.4E-06 62.4 8.8 85 186-280 1426-1515(2050)
381 1vht_A Dephospho-COA kinase; s 93.0 0.058 2E-06 51.1 3.7 23 187-209 4-26 (218)
382 1zak_A Adenylate kinase; ATP:A 93.0 0.044 1.5E-06 52.2 2.8 23 187-209 5-27 (222)
383 2f1r_A Molybdopterin-guanine d 93.0 0.031 1.1E-06 50.7 1.6 22 188-209 3-24 (171)
384 2f6r_A COA synthase, bifunctio 93.0 0.057 2E-06 53.5 3.7 24 186-209 74-97 (281)
385 3tif_A Uncharacterized ABC tra 92.9 0.056 1.9E-06 52.0 3.5 23 187-209 31-53 (235)
386 2i3b_A HCR-ntpase, human cance 92.9 0.046 1.6E-06 50.6 2.6 23 188-210 2-24 (189)
387 3dl0_A Adenylate kinase; phosp 92.9 0.05 1.7E-06 51.5 3.0 21 189-209 2-22 (216)
388 4eaq_A DTMP kinase, thymidylat 92.9 0.1 3.5E-06 49.9 5.2 23 187-209 26-48 (229)
389 2pcj_A ABC transporter, lipopr 92.8 0.053 1.8E-06 51.7 3.1 23 187-209 30-52 (224)
390 3lnc_A Guanylate kinase, GMP k 92.8 0.036 1.2E-06 53.2 1.9 23 187-209 27-50 (231)
391 1cr0_A DNA primase/helicase; R 92.8 0.14 4.7E-06 51.2 6.3 53 186-242 34-86 (296)
392 2ehv_A Hypothetical protein PH 92.8 0.053 1.8E-06 52.5 3.1 23 187-209 30-52 (251)
393 1np6_A Molybdopterin-guanine d 92.8 0.059 2E-06 49.0 3.2 23 187-209 6-28 (174)
394 3b9q_A Chloroplast SRP recepto 92.8 0.063 2.2E-06 53.7 3.7 23 187-209 100-122 (302)
395 2onk_A Molybdate/tungstate ABC 92.7 0.06 2E-06 51.9 3.3 22 188-209 25-46 (240)
396 4gt6_A Cell surface protein; l 92.7 0.34 1.2E-05 50.4 9.5 79 597-684 307-387 (394)
397 1sq5_A Pantothenate kinase; P- 92.7 0.065 2.2E-06 53.9 3.7 42 186-229 79-121 (308)
398 3nwj_A ATSK2; P loop, shikimat 92.7 0.046 1.6E-06 53.0 2.4 23 187-209 48-70 (250)
399 2cbz_A Multidrug resistance-as 92.6 0.065 2.2E-06 51.6 3.5 23 187-209 31-53 (237)
400 3io3_A DEHA2D07832P; chaperone 92.6 0.11 3.7E-06 53.1 5.2 51 182-234 13-64 (348)
401 3d3q_A TRNA delta(2)-isopenten 92.6 0.06 2.1E-06 54.4 3.2 22 188-209 8-29 (340)
402 3gqb_B V-type ATP synthase bet 92.6 0.088 3E-06 55.0 4.5 103 178-280 137-261 (464)
403 3k1j_A LON protease, ATP-depen 92.5 0.077 2.6E-06 58.9 4.4 42 166-209 41-82 (604)
404 1b0u_A Histidine permease; ABC 92.5 0.069 2.4E-06 52.3 3.5 24 186-209 31-54 (262)
405 3a8t_A Adenylate isopentenyltr 92.5 0.058 2E-06 54.3 3.0 23 187-209 40-62 (339)
406 3ake_A Cytidylate kinase; CMP 92.5 0.062 2.1E-06 50.4 3.0 22 188-209 3-24 (208)
407 3gfo_A Cobalt import ATP-bindi 92.5 0.063 2.2E-06 52.9 3.2 23 187-209 34-56 (275)
408 3vr4_D V-type sodium ATPase su 92.5 0.09 3.1E-06 55.0 4.4 103 178-280 141-258 (465)
409 3p32_A Probable GTPase RV1496/ 92.4 0.11 3.7E-06 53.4 5.0 35 175-209 65-101 (355)
410 3b85_A Phosphate starvation-in 92.4 0.052 1.8E-06 51.0 2.3 23 187-209 22-44 (208)
411 3r20_A Cytidylate kinase; stru 92.4 0.067 2.3E-06 51.1 3.1 23 187-209 9-31 (233)
412 2olj_A Amino acid ABC transpor 92.3 0.075 2.6E-06 52.0 3.5 24 186-209 49-72 (263)
413 4h09_A Hypothetical leucine ri 92.3 0.84 2.9E-05 47.1 11.9 79 597-682 259-340 (379)
414 4gzl_A RAS-related C3 botulinu 92.3 0.071 2.4E-06 49.9 3.2 36 175-210 18-53 (204)
415 1mv5_A LMRA, multidrug resista 92.3 0.082 2.8E-06 51.1 3.7 24 186-209 27-50 (243)
416 2ck3_A ATP synthase subunit al 92.3 0.27 9.1E-06 52.2 7.8 102 177-279 151-271 (510)
417 3exa_A TRNA delta(2)-isopenten 92.3 0.072 2.5E-06 53.0 3.3 23 187-209 3-25 (322)
418 4g1u_C Hemin import ATP-bindin 92.3 0.07 2.4E-06 52.3 3.2 23 187-209 37-59 (266)
419 3crm_A TRNA delta(2)-isopenten 92.2 0.072 2.5E-06 53.5 3.3 23 187-209 5-27 (323)
420 1ji0_A ABC transporter; ATP bi 92.2 0.07 2.4E-06 51.5 3.1 23 187-209 32-54 (240)
421 2pze_A Cystic fibrosis transme 92.2 0.073 2.5E-06 50.9 3.1 23 187-209 34-56 (229)
422 1sgw_A Putative ABC transporte 92.2 0.062 2.1E-06 50.7 2.6 23 187-209 35-57 (214)
423 4hlc_A DTMP kinase, thymidylat 92.2 0.22 7.4E-06 46.7 6.3 50 188-241 3-52 (205)
424 1g6h_A High-affinity branched- 92.2 0.072 2.5E-06 52.0 3.1 23 187-209 33-55 (257)
425 2xb4_A Adenylate kinase; ATP-b 92.1 0.073 2.5E-06 50.7 3.1 21 189-209 2-22 (223)
426 3iqw_A Tail-anchored protein t 92.1 0.17 5.9E-06 51.3 6.0 52 181-235 10-61 (334)
427 1vpl_A ABC transporter, ATP-bi 92.1 0.084 2.9E-06 51.4 3.5 24 186-209 40-63 (256)
428 1a7j_A Phosphoribulokinase; tr 92.1 0.043 1.5E-06 54.7 1.4 24 186-209 4-27 (290)
429 1zu4_A FTSY; GTPase, signal re 92.1 0.12 4.1E-06 52.1 4.7 39 186-227 104-142 (320)
430 2ff7_A Alpha-hemolysin translo 92.1 0.076 2.6E-06 51.5 3.1 23 187-209 35-57 (247)
431 3upu_A ATP-dependent DNA helic 92.0 0.2 7E-06 53.4 6.8 42 167-209 22-67 (459)
432 2zej_A Dardarin, leucine-rich 92.0 0.075 2.6E-06 48.7 3.0 22 189-210 4-25 (184)
433 3foz_A TRNA delta(2)-isopenten 92.0 0.083 2.9E-06 52.4 3.4 24 186-209 9-32 (316)
434 4fs7_A Uncharacterized protein 92.0 0.59 2E-05 48.6 10.3 118 547-680 273-393 (394)
435 2ghi_A Transport protein; mult 92.0 0.085 2.9E-06 51.5 3.5 24 186-209 45-68 (260)
436 2og2_A Putative signal recogni 92.0 0.088 3E-06 53.9 3.7 23 187-209 157-179 (359)
437 3be4_A Adenylate kinase; malar 92.0 0.076 2.6E-06 50.3 3.0 22 188-209 6-27 (217)
438 1e4v_A Adenylate kinase; trans 92.0 0.074 2.5E-06 50.2 2.9 21 189-209 2-22 (214)
439 2dr3_A UPF0273 protein PH0284; 92.0 0.11 3.9E-06 49.9 4.4 47 187-238 23-69 (247)
440 2d2e_A SUFC protein; ABC-ATPas 92.0 0.078 2.7E-06 51.5 3.1 23 187-209 29-51 (250)
441 2ixe_A Antigen peptide transpo 91.9 0.087 3E-06 51.8 3.5 24 186-209 44-67 (271)
442 2zu0_C Probable ATP-dependent 91.9 0.09 3.1E-06 51.6 3.5 24 186-209 45-68 (267)
443 1ltq_A Polynucleotide kinase; 91.9 0.085 2.9E-06 52.8 3.4 22 188-209 3-24 (301)
444 2qi9_C Vitamin B12 import ATP- 91.8 0.084 2.9E-06 51.2 3.2 23 187-209 26-48 (249)
445 1oix_A RAS-related protein RAB 91.8 0.082 2.8E-06 48.9 3.0 24 187-210 29-52 (191)
446 3v9p_A DTMP kinase, thymidylat 91.8 0.12 4.1E-06 49.2 4.2 23 187-209 25-47 (227)
447 2qe7_A ATP synthase subunit al 91.8 0.27 9.3E-06 52.0 7.2 97 178-279 152-263 (502)
448 2eyu_A Twitching motility prot 91.8 0.1 3.5E-06 51.0 3.7 25 185-209 23-47 (261)
449 1ak2_A Adenylate kinase isoenz 91.7 0.096 3.3E-06 50.2 3.5 23 187-209 16-38 (233)
450 4edh_A DTMP kinase, thymidylat 91.7 0.25 8.5E-06 46.5 6.2 23 187-209 6-28 (213)
451 2v9p_A Replication protein E1; 91.7 0.092 3.1E-06 52.4 3.4 25 185-209 124-148 (305)
452 2yz2_A Putative ABC transporte 91.7 0.096 3.3E-06 51.4 3.5 23 187-209 33-55 (266)
453 3sr0_A Adenylate kinase; phosp 91.7 0.088 3E-06 49.4 3.0 21 189-209 2-22 (206)
454 2wji_A Ferrous iron transport 91.7 0.1 3.4E-06 46.8 3.3 23 188-210 4-26 (165)
455 2nq2_C Hypothetical ABC transp 91.7 0.09 3.1E-06 51.1 3.2 23 187-209 31-53 (253)
456 2ihy_A ABC transporter, ATP-bi 91.6 0.09 3.1E-06 51.9 3.2 23 187-209 47-69 (279)
457 2qmh_A HPR kinase/phosphorylas 91.6 0.097 3.3E-06 48.3 3.1 23 187-209 34-56 (205)
458 2vp4_A Deoxynucleoside kinase; 91.6 0.092 3.2E-06 50.2 3.2 24 186-209 19-42 (230)
459 4dzz_A Plasmid partitioning pr 91.6 0.13 4.6E-06 47.9 4.2 86 188-283 2-88 (206)
460 1yrb_A ATP(GTP)binding protein 91.6 0.098 3.3E-06 51.1 3.4 23 187-209 14-36 (262)
461 2j9r_A Thymidine kinase; TK1, 91.5 0.17 5.7E-06 47.4 4.6 108 187-306 28-138 (214)
462 4h09_A Hypothetical leucine ri 91.4 1.1 3.9E-05 46.0 11.6 109 547-668 237-348 (379)
463 2f9l_A RAB11B, member RAS onco 91.3 0.092 3.2E-06 48.8 2.8 23 188-210 6-28 (199)
464 1xx6_A Thymidine kinase; NESG, 91.3 0.056 1.9E-06 50.0 1.3 108 187-306 8-118 (191)
465 2c61_A A-type ATP synthase non 91.3 0.17 5.9E-06 53.2 5.0 102 178-279 142-258 (469)
466 2yhs_A FTSY, cell division pro 91.3 0.11 3.9E-06 55.0 3.7 23 187-209 293-315 (503)
467 1p9r_A General secretion pathw 91.3 0.2 6.9E-06 52.4 5.6 41 169-209 149-189 (418)
468 1fx0_A ATP synthase alpha chai 91.2 0.17 5.9E-06 53.5 4.9 88 187-279 163-264 (507)
469 2r9v_A ATP synthase subunit al 91.1 0.24 8.1E-06 52.5 5.7 98 177-279 164-276 (515)
470 2dyk_A GTP-binding protein; GT 91.0 0.13 4.4E-06 45.5 3.4 23 188-210 2-24 (161)
471 1tq4_A IIGP1, interferon-induc 91.0 0.15 5.2E-06 53.2 4.3 24 186-209 68-91 (413)
472 2pjz_A Hypothetical protein ST 91.0 0.12 4E-06 50.6 3.2 23 187-209 30-52 (263)
473 2afh_E Nitrogenase iron protei 91.0 0.2 6.7E-06 49.8 4.9 39 188-229 3-41 (289)
474 1nlf_A Regulatory protein REPA 91.0 0.11 3.6E-06 51.5 2.9 23 187-209 30-52 (279)
475 2ged_A SR-beta, signal recogni 90.9 0.2 6.8E-06 46.0 4.7 24 187-210 48-71 (193)
476 3hjn_A DTMP kinase, thymidylat 90.9 0.3 1E-05 45.3 5.8 51 189-242 2-52 (197)
477 4gt6_A Cell surface protein; l 90.8 0.53 1.8E-05 49.0 8.4 105 569-685 260-367 (394)
478 1svm_A Large T antigen; AAA+ f 90.8 0.12 4.2E-06 53.2 3.4 25 185-209 167-191 (377)
479 3f9v_A Minichromosome maintena 90.8 0.074 2.5E-06 58.8 1.8 21 189-209 329-349 (595)
480 1cp2_A CP2, nitrogenase iron p 90.8 0.24 8.3E-06 48.4 5.4 39 188-229 2-40 (269)
481 3oaa_A ATP synthase subunit al 90.8 0.58 2E-05 49.4 8.3 98 178-280 152-264 (513)
482 1q3t_A Cytidylate kinase; nucl 90.7 0.13 4.6E-06 49.3 3.4 23 187-209 16-38 (236)
483 2r8r_A Sensor protein; KDPD, P 90.7 0.24 8E-06 46.8 4.9 38 189-229 8-45 (228)
484 3cmu_A Protein RECA, recombina 90.7 0.49 1.7E-05 58.8 8.9 85 187-281 383-472 (2050)
485 3nh6_A ATP-binding cassette SU 90.7 0.1 3.6E-06 52.1 2.6 24 186-209 79-102 (306)
486 2bbs_A Cystic fibrosis transme 90.7 0.14 4.6E-06 50.9 3.4 24 186-209 63-86 (290)
487 3sop_A Neuronal-specific septi 90.7 0.12 4.2E-06 50.7 3.0 21 189-209 4-24 (270)
488 2ce2_X GTPase HRAS; signaling 90.6 0.12 4.1E-06 45.9 2.7 22 189-210 5-26 (166)
489 2ocp_A DGK, deoxyguanosine kin 90.6 0.14 4.9E-06 49.2 3.4 23 187-209 2-24 (241)
490 2wjg_A FEOB, ferrous iron tran 90.6 0.15 5E-06 46.7 3.3 23 188-210 8-30 (188)
491 2zts_A Putative uncharacterize 90.5 0.15 5.2E-06 49.2 3.6 49 187-239 30-78 (251)
492 3llm_A ATP-dependent RNA helic 90.5 1 3.6E-05 42.9 9.6 32 175-208 66-97 (235)
493 2lkc_A Translation initiation 90.5 0.21 7.2E-06 45.1 4.3 25 186-210 7-31 (178)
494 4tmk_A Protein (thymidylate ki 90.5 0.33 1.1E-05 45.6 5.7 51 188-241 4-55 (213)
495 1z2a_A RAS-related protein RAB 90.4 0.13 4.4E-06 45.9 2.8 23 188-210 6-28 (168)
496 2nzj_A GTP-binding protein REM 90.4 0.14 4.7E-06 46.2 2.9 23 188-210 5-27 (175)
497 3eph_A TRNA isopentenyltransfe 90.4 0.14 4.7E-06 52.9 3.2 22 188-209 3-24 (409)
498 3fvq_A Fe(3+) IONS import ATP- 90.4 0.15 5E-06 52.2 3.4 23 187-209 30-52 (359)
499 1zj6_A ADP-ribosylation factor 90.4 0.26 9E-06 45.0 4.9 34 176-210 6-39 (187)
500 1u0j_A DNA replication protein 90.3 0.24 8.2E-06 48.1 4.7 34 176-209 91-126 (267)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=2e-46 Score=417.65 Aligned_cols=316 Identities=13% Similarity=0.107 Sum_probs=239.2
Q ss_pred CCCCCCCCCCCCcchHHHHHHHHHcC---CceEEEEEcCCCCcHHHHHHHHhc--cccccccCCCcEEEEEeCCCC--CH
Q 042541 160 SAPDPPVISPGLDVPLKELKMELFKD---GRQFIVVSAPGGYGKTTLVQRLCK--DDQVQGKFKDDIFYVTVSKNP--NV 232 (695)
Q Consensus 160 ~~~~~~~~~vGr~~~~~~l~~~L~~~---~~~vv~I~G~gGiGKTtLa~~~~~--~~~~~~~f~~~~~wv~~~~~~--~~ 232 (695)
.+|..+.. |||+.++++|.++|..+ +.++|+|+||||+||||||+++|+ +.+++.+|+. ++||++++.+ +.
T Consensus 123 ~~p~~~~~-~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~-~~wv~vs~~~~~~~ 200 (549)
T 2a5y_B 123 NVPKQMTC-YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDS-IVWLKDSGTAPKST 200 (549)
T ss_dssp TCBCCCCS-CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSE-EEEEECCCCSTTHH
T ss_pred CCCCCCcc-CCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCc-EEEEEECCCCCCCH
Confidence 45555544 59999999999999843 579999999999999999999998 6789999987 8899999985 89
Q ss_pred HHHHHHHHHhcCCCCC--CCCC-hHHHHHHHHHHH-HhcCCC-cEEEEEeCCCCCChHHHhhhccCCCCCEEEEEcCCCC
Q 042541 233 KAIVQKVLHHKGYPVP--EFQT-DEAAINDLERFF-KQMRIE-AILLVLDDVWPGSESLLQKLGFQLPDYKILVTSRSEF 307 (695)
Q Consensus 233 ~~~~~~i~~~l~~~~~--~~~~-~~~~~~~l~~~~-~~l~~~-~~LlVlDdv~~~~~~~~~~l~~~~~gs~iivTtR~~~ 307 (695)
..++..|+.+++.... ...+ .......+...+ +.++++ |+||||||||+.....|. ..+||+||||||+..
T Consensus 201 ~~~~~~il~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~~~~----~~~gs~ilvTTR~~~ 276 (549)
T 2a5y_B 201 FDLFTDILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETIRWA----QELRLRCLVTTRDVE 276 (549)
T ss_dssp HHHHHHHHHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHHHHH----HHTTCEEEEEESBGG
T ss_pred HHHHHHHHHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhhccc----ccCCCEEEEEcCCHH
Confidence 9999999999986521 1111 111123343444 677886 999999999996543222 238999999999974
Q ss_pred CC--CC---CeEecCCCChHHHHHHHHHhccCCCCCCCCCchHHHHHHHHhcCCchhHHHHHHHhhCCCCHHHHHHHHHH
Q 042541 308 PQ--FG---SVHYLKPLTYEAARTLFLHSANLQDGNSYIPDENIVSKILRACKGCPLALKVVGGSLCGKHEVFWQRMVKE 382 (695)
Q Consensus 308 ~~--~~---~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~~~~L~~~~~~~w~~~l~~ 382 (695)
+. .+ ..|++++|+.++||+||.+.++.... +....+++++|+++|+|+||||+++|+.|+.+.. +|...+..
T Consensus 277 v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~--~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~~w-~~~~~l~~ 353 (549)
T 2a5y_B 277 ISNAASQTCEFIEVTSLEIDECYDFLEAYGMPMPV--GEKEEDVLNKTIELSSGNPATLMMFFKSCEPKTF-EKMAQLNN 353 (549)
T ss_dssp GGGGCCSCEEEEECCCCCHHHHHHHHHHTSCCCC----CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSSSH-HHHHHHHH
T ss_pred HHHHcCCCCeEEECCCCCHHHHHHHHHHHhcCCCC--chhHHHHHHHHHHHhCCChHHHHHHHHHhccchH-HHHHHhHH
Confidence 32 22 37999999999999999999876532 2446789999999999999999999999987742 33333332
Q ss_pred hcCCCCccCchhhHHHHHHHHHHhccHHHHHHHh-----------hhcccCCCcccChHHHHHHHHHh--hCCChh----
Q 042541 383 CSRGESVFQSKNDILDCLGSSLDVLNNEVKECYL-----------DLCSFPEDQRIPITALIDMWMEL--YELVDD---- 445 (695)
Q Consensus 383 ~~~~~~~~~~~~~i~~~l~~s~~~L~~~~k~cf~-----------~ls~fp~~~~i~~~~Li~~W~~~--~~~~~~---- 445 (695)
..... ...++..++.+||+.||+++|.||+ |||+||+++.|+ +.+|+++ |++...
T Consensus 354 ~l~~~----~~~~i~~~l~~Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~~~~~~~ 425 (549)
T 2a5y_B 354 KLESR----GLVGVECITPYSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDICSNEEEQ 425 (549)
T ss_dssp HHHHH----CSSTTCCCSSSSSSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC-------CC
T ss_pred Hhhcc----cHHHHHHHHhcccccccHHHHHHHhccchhhhhHhhheeeeCCCCeee----eeeeeeeccceeccCCCCC
Confidence 21100 1235667788899999888999988 999999999999 7899998 666421
Q ss_pred --HHHHHHHHHHhhccccchhhccccCCCCCCCCCcceehhHHHHHHHHHhccCCCcc
Q 042541 446 --VFAITNLHELSSQNLVDRVVTRKTAGDYGCYNDDFVMQHDLLRELTICRSKSEPIN 501 (695)
Q Consensus 446 --~~~~~~l~~L~~~sLl~~~~~~~~~~~~~~~~~~~~~mHdlv~~~a~~~~~~e~~~ 501 (695)
+.+.++|++|+++|||++... ....+|+|||+||++|+.++.++++.
T Consensus 426 ~~~~~~~~l~~L~~rsLl~~~~~---------~~~~~~~mHdlv~~~a~~~~~~~~~~ 474 (549)
T 2a5y_B 426 LDDEVADRLKRLSKRGALLSGKR---------MPVLTFKIDHIIHMFLKHVVDAQTIA 474 (549)
T ss_dssp CTHHHHHHHHHTTTBSSCSEEEC---------SSSCEEECCHHHHHHHHTTSCTHHHH
T ss_pred CHHHHHHHHHHHHHcCCeeEecC---------CCceEEEeChHHHHHHHHHHHHHHHH
Confidence 234449999999999997432 13467999999999999999887653
No 2
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=9.1e-40 Score=401.93 Aligned_cols=317 Identities=19% Similarity=0.270 Sum_probs=246.4
Q ss_pred CCCCCCCCCCCCCCcchHHHHHHHHH--cCCceEEEEEcCCCCcHHHHHHHHhccccc-cccCCCcEEEEEeCCCCC--H
Q 042541 158 CCSAPDPPVISPGLDVPLKELKMELF--KDGRQFIVVSAPGGYGKTTLVQRLCKDDQV-QGKFKDDIFYVTVSKNPN--V 232 (695)
Q Consensus 158 ~~~~~~~~~~~vGr~~~~~~l~~~L~--~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~-~~~f~~~~~wv~~~~~~~--~ 232 (695)
...+|..+..||||++++++|.++|. +++.++|+|+||||+||||||+++|++.+. ..+|..+++|+++++..+ .
T Consensus 116 ~~~~p~~~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 195 (1249)
T 3sfz_A 116 EGGVPQRPVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGL 195 (1249)
T ss_dssp HTTCCCCCSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHH
T ss_pred cCCCCCCCceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHH
Confidence 35677788889999999999999997 456899999999999999999999996543 667888799999998654 3
Q ss_pred HHHHHHHHHhcCCCCCCCCChHHHHHHHHHHH-HhcCCC--cEEEEEeCCCCCChHHHhhhccCCCCCEEEEEcCCCCCC
Q 042541 233 KAIVQKVLHHKGYPVPEFQTDEAAINDLERFF-KQMRIE--AILLVLDDVWPGSESLLQKLGFQLPDYKILVTSRSEFPQ 309 (695)
Q Consensus 233 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~-~~l~~~--~~LlVlDdv~~~~~~~~~~l~~~~~gs~iivTtR~~~~~ 309 (695)
...+..++..+..............+.+...+ ..+.++ |+||||||||+.. .+.. ..+||+||||||++...
T Consensus 196 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~--~~~~---~~~~~~ilvTtR~~~~~ 270 (1249)
T 3sfz_A 196 LMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPW--VLKA---FDNQCQILLTTRDKSVT 270 (1249)
T ss_dssp HHHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHH--HHTT---TCSSCEEEEEESSTTTT
T ss_pred HHHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHH--HHHh---hcCCCEEEEEcCCHHHH
Confidence 44466777777654322111111223334444 556666 9999999999753 2333 46899999999998543
Q ss_pred -----CCCeEecCC-CChHHHHHHHHHhccCCCCCCCCCchHHHHHHHHhcCCchhHHHHHHHhhCCCCHHHHHHHHHHh
Q 042541 310 -----FGSVHYLKP-LTYEAARTLFLHSANLQDGNSYIPDENIVSKILRACKGCPLALKVVGGSLCGKHEVFWQRMVKEC 383 (695)
Q Consensus 310 -----~~~~~~l~~-L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~~~~L~~~~~~~w~~~l~~~ 383 (695)
....+++++ |+++||++||...++... ...++.+++|+++|+|+||||+++|++|+.++ ..|...++.+
T Consensus 271 ~~~~~~~~~~~~~~~l~~~~a~~l~~~~~~~~~----~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~-~~~~~~l~~l 345 (1249)
T 3sfz_A 271 DSVMGPKHVVPVESGLGREKGLEILSLFVNMKK----EDLPAEAHSIIKECKGSPLVVSLIGALLRDFP-NRWAYYLRQL 345 (1249)
T ss_dssp TTCCSCBCCEECCSSCCHHHHHHHHHHHHTSCS----TTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS-SCHHHHHHHH
T ss_pred HhhcCCceEEEecCCCCHHHHHHHHHHhhCCCh----hhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh-hHHHHHHHHH
Confidence 224789996 999999999998885432 23567899999999999999999999998776 4688788776
Q ss_pred cCCC-Cc-----cCchhhHHHHHHHHHHhccHHHHHHHhhhcccCCCcccChHHHHHHHHHhhCCChhHHHHHHHHHHhh
Q 042541 384 SRGE-SV-----FQSKNDILDCLGSSLDVLNNEVKECYLDLCSFPEDQRIPITALIDMWMELYELVDDVFAITNLHELSS 457 (695)
Q Consensus 384 ~~~~-~~-----~~~~~~i~~~l~~s~~~L~~~~k~cf~~ls~fp~~~~i~~~~Li~~W~~~~~~~~~~~~~~~l~~L~~ 457 (695)
.... .. ....+.+..++.+||+.||+++|.||+|||+||+++.|+.+.++.+|.++ + +.++++|++|++
T Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~----~-~~~~~~l~~L~~ 420 (1249)
T 3sfz_A 346 QNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLE----T-EEVEDILQEFVN 420 (1249)
T ss_dssp HSCCCCCSSCTTCTTHHHHHHHHHHHHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCC----H-HHHHHHHHHHHH
T ss_pred hhhhhhhcccccccchHHHHHHHHHHHHhCCHHHHHHHHHhCccCCCCeeCHHHHHHHhCCC----H-HHHHHHHHHHHh
Confidence 4432 11 11234799999999999999999999999999999999999999999542 3 388999999999
Q ss_pred ccccchhhccccCCCCCCCCCcceehhHHHHHHHHHhccCC
Q 042541 458 QNLVDRVVTRKTAGDYGCYNDDFVMQHDLLRELTICRSKSE 498 (695)
Q Consensus 458 ~sLl~~~~~~~~~~~~~~~~~~~~~mHdlv~~~a~~~~~~e 498 (695)
+|||+... .+...+|+||++||++|+..+.++
T Consensus 421 ~sl~~~~~---------~~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 421 KSLLFCNR---------NGKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp TTSCEEEE---------SSSSEEEECCHHHHHHHHHHTGGG
T ss_pred ccceEEec---------CCCceEEEecHHHHHHHHhhhhHH
Confidence 99998632 233457999999999999987765
No 3
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=100.00 E-value=7.8e-40 Score=367.88 Aligned_cols=284 Identities=18% Similarity=0.266 Sum_probs=224.8
Q ss_pred CCCCCCcchHHHHHHHHHc-CCceEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCCCCCHHHHHHHHHHhcC
Q 042541 166 VISPGLDVPLKELKMELFK-DGRQFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSKNPNVKAIVQKVLHHKG 244 (695)
Q Consensus 166 ~~~vGr~~~~~~l~~~L~~-~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~~~~~~~~~~~i~~~l~ 244 (695)
...|||+.++++|.++|.. ++.++|+|+||||+||||||+++|++.+++.+|+.+++|+++++.++...++..|+..++
T Consensus 128 k~~VGRe~eLeeL~elL~~~d~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~lL~ 207 (1221)
T 1vt4_I 128 KYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLY 207 (1221)
T ss_dssp CSCCCCHHHHHHHHHHHHHCCSSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHhccCCCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHHh
Confidence 3459999999999999985 558999999999999999999999987889999988999999999998888888777542
Q ss_pred CCC---CCC----CCh----HHHHHHHHHHHHhcCCCcEEEEEeCCCCCChHHHhhhccCCCCCEEEEEcCCCCCC---C
Q 042541 245 YPV---PEF----QTD----EAAINDLERFFKQMRIEAILLVLDDVWPGSESLLQKLGFQLPDYKILVTSRSEFPQ---F 310 (695)
Q Consensus 245 ~~~---~~~----~~~----~~~~~~l~~~~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~~~gs~iivTtR~~~~~---~ 310 (695)
... ... ... +...+.+...++.+.++++||||||||+.. .+..+. +||+||||||++... .
T Consensus 208 ~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~e--qLe~f~---pGSRILVTTRd~~Va~~l~ 282 (1221)
T 1vt4_I 208 QIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAK--AWNAFN---LSCKILLTTRFKQVTDFLS 282 (1221)
T ss_dssp HHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCHH--HHHHHH---SSCCEEEECSCSHHHHHHH
T ss_pred hcCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChHH--HHHhhC---CCeEEEEeccChHHHHhcC
Confidence 211 000 011 222344444444558999999999999843 355553 899999999998532 1
Q ss_pred -CCeEecC------CCChHHHHHHHHHhccCCCCCCCCCchHHHHHHHHhcCCchhHHHHHHHhhCCC--CHHHHHHHHH
Q 042541 311 -GSVHYLK------PLTYEAARTLFLHSANLQDGNSYIPDENIVSKILRACKGCPLALKVVGGSLCGK--HEVFWQRMVK 381 (695)
Q Consensus 311 -~~~~~l~------~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~~~~L~~~--~~~~w~~~l~ 381 (695)
...|.++ +|+.+|||+||.+..... ..++..+| |+|+||||+++|+.|+.+ +.++|...
T Consensus 283 g~~vy~LeL~d~dL~LS~eEA~eLF~~~~g~~-------~eeL~~eI---CgGLPLALkLaGs~Lr~k~~s~eeW~~~-- 350 (1221)
T 1vt4_I 283 AATTTHISLDHHSMTLTPDEVKSLLLKYLDCR-------PQDLPREV---LTTNPRRLSIIAESIRDGLATWDNWKHV-- 350 (1221)
T ss_dssp HHSSCEEEECSSSSCCCHHHHHHHHHHHHCCC-------TTTHHHHH---CCCCHHHHHHHHHHHHHSCSSHHHHHHC--
T ss_pred CCeEEEecCccccCCcCHHHHHHHHHHHcCCC-------HHHHHHHH---hCCCHHHHHHHHHHHhCCCCCHHHHhcC--
Confidence 1256666 999999999999884221 23344444 999999999999999877 67888631
Q ss_pred HhcCCCCccCchhhHHHHHHHHHHhccHHH-HHHHhhhcccCCCcccChHHHHHHHHHhhCCChhHHHHHHHHHHhhccc
Q 042541 382 ECSRGESVFQSKNDILDCLGSSLDVLNNEV-KECYLDLCSFPEDQRIPITALIDMWMELYELVDDVFAITNLHELSSQNL 460 (695)
Q Consensus 382 ~~~~~~~~~~~~~~i~~~l~~s~~~L~~~~-k~cf~~ls~fp~~~~i~~~~Li~~W~~~~~~~~~~~~~~~l~~L~~~sL 460 (695)
....+..++.+||+.||++. |+||++||+||+++.|+.+.++.+|++++ ++ .++.+|++|+++||
T Consensus 351 ----------~~~~I~aaLelSYd~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~aeG---ee-dAe~~L~eLvdRSL 416 (1221)
T 1vt4_I 351 ----------NCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI---KS-DVMVVVNKLHKYSL 416 (1221)
T ss_dssp ----------SCHHHHHHHHHHHHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSC---SH-HHHHHHHHHHTSSS
T ss_pred ----------ChhHHHHHHHHHHHhCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCC---HH-HHHHHHHHHHhhCC
Confidence 23689999999999999999 99999999999999999999999998765 22 68899999999999
Q ss_pred cchhhccccCCCCCCCCCcceehhHHHHHHH
Q 042541 461 VDRVVTRKTAGDYGCYNDDFVMQHDLLRELT 491 (695)
Q Consensus 461 l~~~~~~~~~~~~~~~~~~~~~mHdlv~~~a 491 (695)
|+.. .+..+|+|||++++++
T Consensus 417 Lq~d-----------~~~~rYrMHDLllELr 436 (1221)
T 1vt4_I 417 VEKQ-----------PKESTISIPSIYLELK 436 (1221)
T ss_dssp SSBC-----------SSSSEEBCCCHHHHHH
T ss_pred EEEe-----------CCCCEEEehHHHHHHh
Confidence 9962 1246799999999966
No 4
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=100.00 E-value=3.1e-36 Score=340.46 Aligned_cols=312 Identities=20% Similarity=0.301 Sum_probs=234.3
Q ss_pred CCCCCCCCCCCCCcchHHHHHHHHH--cCCceEEEEEcCCCCcHHHHHHHHhccccc-cccCCCcEEEEEeCCCCCHHHH
Q 042541 159 CSAPDPPVISPGLDVPLKELKMELF--KDGRQFIVVSAPGGYGKTTLVQRLCKDDQV-QGKFKDDIFYVTVSKNPNVKAI 235 (695)
Q Consensus 159 ~~~~~~~~~~vGr~~~~~~l~~~L~--~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~-~~~f~~~~~wv~~~~~~~~~~~ 235 (695)
.++|..+..||||+.++++|.++|. .++.++|+|+||||+||||||++++++.++ ..+|+.+++|++++.. +...+
T Consensus 117 ~~~P~~~~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~-~~~~~ 195 (591)
T 1z6t_A 117 GGVPQRPVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ-DKSGL 195 (591)
T ss_dssp TTCCCCCSSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC-CHHHH
T ss_pred CCCCCCCCeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCC-chHHH
Confidence 3566777889999999999999997 346799999999999999999999997655 7889766999999876 33333
Q ss_pred HHH---HHHhcCCCC----CCCCChHHHHHHHHHHHHhcCCCcEEEEEeCCCCCChHHHhhhccCCCCCEEEEEcCCCCC
Q 042541 236 VQK---VLHHKGYPV----PEFQTDEAAINDLERFFKQMRIEAILLVLDDVWPGSESLLQKLGFQLPDYKILVTSRSEFP 308 (695)
Q Consensus 236 ~~~---i~~~l~~~~----~~~~~~~~~~~~l~~~~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~~~gs~iivTtR~~~~ 308 (695)
+.. +...++... ............+...+.. +.+++||||||+|+.. .+..+ .+|++||||||+...
T Consensus 196 ~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~~~~LLVLDdv~~~~--~l~~l---~~~~~ilvTsR~~~~ 269 (591)
T 1z6t_A 196 LMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLR-KHPRSLLILDDVWDSW--VLKAF---DSQCQILLTTRDKSV 269 (591)
T ss_dssp HHHHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHH-TCTTCEEEEEEECCHH--HHHTT---CSSCEEEEEESCGGG
T ss_pred HHHHHHHHHHhccccccccCCCCCHHHHHHHHHHHHcc-CCCCeEEEEeCCCCHH--HHHHh---cCCCeEEEECCCcHH
Confidence 333 344554211 1112333344444444421 3479999999999742 34433 678999999999843
Q ss_pred C---CCCeEec---CCCChHHHHHHHHHhccCCCCCCCCCchHHHHHHHHhcCCchhHHHHHHHhhCCCCHHHHHHHHHH
Q 042541 309 Q---FGSVHYL---KPLTYEAARTLFLHSANLQDGNSYIPDENIVSKILRACKGCPLALKVVGGSLCGKHEVFWQRMVKE 382 (695)
Q Consensus 309 ~---~~~~~~l---~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~~~~L~~~~~~~w~~~l~~ 382 (695)
. .+..+++ ++|+.+|+++||...++... ....+.+.+|+++|+|+||||.++|+.++..+ ..|...+..
T Consensus 270 ~~~~~~~~~~v~~l~~L~~~ea~~L~~~~~~~~~----~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~-~~w~~~l~~ 344 (591)
T 1z6t_A 270 TDSVMGPKYVVPVESSLGKEKGLEILSLFVNMKK----ADLPEQAHSIIKECKGSPLVVSLIGALLRDFP-NRWEYYLKQ 344 (591)
T ss_dssp GTTCCSCEEEEECCSSCCHHHHHHHHHHHHTSCG----GGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST-TCHHHHHHH
T ss_pred HHhcCCCceEeecCCCCCHHHHHHHHHHHhCCCc----ccccHHHHHHHHHhCCCcHHHHHHHHHHhcCc-hhHHHHHHH
Confidence 2 2345555 58999999999999886421 12356799999999999999999999998764 368777776
Q ss_pred hcCCCC------ccCchhhHHHHHHHHHHhccHHHHHHHhhhcccCCCcccChHHHHHHHHHhhCCChhHHHHHHHHHHh
Q 042541 383 CSRGES------VFQSKNDILDCLGSSLDVLNNEVKECYLDLCSFPEDQRIPITALIDMWMELYELVDDVFAITNLHELS 456 (695)
Q Consensus 383 ~~~~~~------~~~~~~~i~~~l~~s~~~L~~~~k~cf~~ls~fp~~~~i~~~~Li~~W~~~~~~~~~~~~~~~l~~L~ 456 (695)
+..... ......++..++..||+.||++.|.||++||+||+++.|+.+.+..+|.. +.+ .+..++++|+
T Consensus 345 l~~~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~l~~~----~~~-~~~~~l~~L~ 419 (591)
T 1z6t_A 345 LQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDM----ETE-EVEDILQEFV 419 (591)
T ss_dssp HHSCCCCCSSCCCSSCCHHHHHHHHHHHHTSCTTTHHHHHHGGGCCTTCCEEHHHHHHHHTC----CHH-HHHHHHHHHH
T ss_pred HHHhHHHHhhhccccchHHHHHHHHHHHHhCCHHHHHHHHHccccCCCCccCHHHHHHHhcc----CHH-HHHHHHHHHH
Confidence 653221 11233579999999999999999999999999999999999999999953 233 6889999999
Q ss_pred hccccchhhccccCCCCCCCCCcceehhHHHHHHHHHhcc
Q 042541 457 SQNLVDRVVTRKTAGDYGCYNDDFVMQHDLLRELTICRSK 496 (695)
Q Consensus 457 ~~sLl~~~~~~~~~~~~~~~~~~~~~mHdlv~~~a~~~~~ 496 (695)
++|||+... .+...+|+||+++|++++....
T Consensus 420 ~~~Ll~~~~---------~~~~~~~~~H~lv~~~~~~~~~ 450 (591)
T 1z6t_A 420 NKSLLFCDR---------NGKSFRYYLHDLQVDFLTEKNC 450 (591)
T ss_dssp HTTSSEEEE---------ETTEEEEECCHHHHHHHHHHTG
T ss_pred hCcCeEEec---------CCCccEEEEcHHHHHHHHhhhh
Confidence 999998532 1234579999999999988744
No 5
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.71 E-value=1.6e-15 Score=159.15 Aligned_cols=287 Identities=11% Similarity=0.054 Sum_probs=177.9
Q ss_pred CCCCCCCCCCcchHHHHHHHHHcCCceEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCCCC------CHHHH
Q 042541 162 PDPPVISPGLDVPLKELKMELFKDGRQFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSKNP------NVKAI 235 (695)
Q Consensus 162 ~~~~~~~vGr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~~~------~~~~~ 235 (695)
+..+..|+||+.++++|.+++..+ +++.|+|++|+|||||++++++. . + ++|+++.... +...+
T Consensus 8 ~~~~~~~~gR~~el~~L~~~l~~~--~~v~i~G~~G~GKT~Ll~~~~~~--~----~--~~~~~~~~~~~~~~~~~~~~~ 77 (350)
T 2qen_A 8 KTRREDIFDREEESRKLEESLENY--PLTLLLGIRRVGKSSLLRAFLNE--R----P--GILIDCRELYAERGHITREEL 77 (350)
T ss_dssp CCSGGGSCSCHHHHHHHHHHHHHC--SEEEEECCTTSSHHHHHHHHHHH--S----S--EEEEEHHHHHHTTTCBCHHHH
T ss_pred CCChHhcCChHHHHHHHHHHHhcC--CeEEEECCCcCCHHHHHHHHHHH--c----C--cEEEEeecccccccCCCHHHH
Confidence 345567899999999999988764 79999999999999999999873 2 1 6688876542 56677
Q ss_pred HHHHHHhcCCC----------------CCC--CCChHHHHHHHHHHHHhcCCCcEEEEEeCCCCCCh-------HH---H
Q 042541 236 VQKVLHHKGYP----------------VPE--FQTDEAAINDLERFFKQMRIEAILLVLDDVWPGSE-------SL---L 287 (695)
Q Consensus 236 ~~~i~~~l~~~----------------~~~--~~~~~~~~~~l~~~~~~l~~~~~LlVlDdv~~~~~-------~~---~ 287 (695)
+..+.+.+... ... ........+.+..... ..++++||+||++.... .. +
T Consensus 78 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~vlvlDe~~~~~~~~~~~~~~~~~~L 155 (350)
T 2qen_A 78 IKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGE--ELGEFIVAFDEAQYLRFYGSRGGKELLALF 155 (350)
T ss_dssp HHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHH--HHSCEEEEEETGGGGGGBTTTTTHHHHHHH
T ss_pred HHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHh--ccCCEEEEEeCHHHHhccCccchhhHHHHH
Confidence 77777665420 000 0111222222222221 11389999999976432 22 2
Q ss_pred hhhccCCCCCEEEEEcCCCC-------------CCC---CCeEecCCCChHHHHHHHHHhccCCCCCCCCCchHHHHHHH
Q 042541 288 QKLGFQLPDYKILVTSRSEF-------------PQF---GSVHYLKPLTYEAARTLFLHSANLQDGNSYIPDENIVSKIL 351 (695)
Q Consensus 288 ~~l~~~~~gs~iivTtR~~~-------------~~~---~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~I~ 351 (695)
..+....++.++|+|++... .-. ...+.+.+|+.+|+.+++......... ....+.+.+|+
T Consensus 156 ~~~~~~~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~---~~~~~~~~~i~ 232 (350)
T 2qen_A 156 AYAYDSLPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNL---DVPENEIEEAV 232 (350)
T ss_dssp HHHHHHCTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTC---CCCHHHHHHHH
T ss_pred HHHHHhcCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHH
Confidence 22222235788999876531 011 127899999999999999875432211 12356789999
Q ss_pred HhcCCchhHHHHHHHhhCC-CCHHHHHHHHHHhcCCCCccCchhhHHHHHHHHHHhc---cHHHHHHHhhhcccCCCccc
Q 042541 352 RACKGCPLALKVVGGSLCG-KHEVFWQRMVKECSRGESVFQSKNDILDCLGSSLDVL---NNEVKECYLDLCSFPEDQRI 427 (695)
Q Consensus 352 ~~c~G~PLai~~~~~~L~~-~~~~~w~~~l~~~~~~~~~~~~~~~i~~~l~~s~~~L---~~~~k~cf~~ls~fp~~~~i 427 (695)
+.|+|+|+++..++..+.. .+...+ +.... +.+...+...+..+ ++..+..+..+|. .. +
T Consensus 233 ~~tgG~P~~l~~~~~~~~~~~~~~~~---~~~~~---------~~~~~~~~~~l~~l~~~~~~~~~~l~~la~--g~--~ 296 (350)
T 2qen_A 233 ELLDGIPGWLVVFGVEYLRNGDFGRA---MKRTL---------EVAKGLIMGELEELRRRSPRYVDILRAIAL--GY--N 296 (350)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCCHHHH---HHHHH---------HHHHHHHHHHHHHHHHHCHHHHHHHHHHHT--TC--C
T ss_pred HHhCCCHHHHHHHHHHHhccccHhHH---HHHHH---------HHHHHHHHHHHHHHHhCChhHHHHHHHHHh--CC--C
Confidence 9999999999998875422 222222 11110 11122222233344 7888999988887 22 3
Q ss_pred ChHHHHHHHHHhh-CCChhHHHHHHHHHHhhccccchhhccccCCCCCCCCCcceehhHHHHHHHH
Q 042541 428 PITALIDMWMELY-ELVDDVFAITNLHELSSQNLVDRVVTRKTAGDYGCYNDDFVMQHDLLRELTI 492 (695)
Q Consensus 428 ~~~~Li~~W~~~~-~~~~~~~~~~~l~~L~~~sLl~~~~~~~~~~~~~~~~~~~~~mHdlv~~~a~ 492 (695)
+...+........ .+... ....+++.|.+.+||... +..|.-.|++++++.+
T Consensus 297 ~~~~l~~~~~~~~~~~~~~-~~~~~l~~L~~~gli~~~------------~~~y~~~~p~~~~~~~ 349 (350)
T 2qen_A 297 RWSLIRDYLAVKGTKIPEP-RLYALLENLKKMNWIVEE------------DNTYKIADPVVATVLR 349 (350)
T ss_dssp SHHHHHHHHHHTTCCCCHH-HHHHHHHHHHHTTSEEEE------------TTEEEESSHHHHHHHT
T ss_pred CHHHHHHHHHHHhCCCCHH-HHHHHHHHHHhCCCEEec------------CCEEEEecHHHHHHHc
Confidence 4455544432221 34443 778999999999999852 1233345888888753
No 6
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.67 E-value=6.1e-16 Score=166.25 Aligned_cols=284 Identities=17% Similarity=0.067 Sum_probs=177.8
Q ss_pred CCCCCCCcchHHHHHHHH-H----c--CCceEEEE--EcCCCCcHHHHHHHHhccccccc-----cCCCcEEEEEeCCCC
Q 042541 165 PVISPGLDVPLKELKMEL-F----K--DGRQFIVV--SAPGGYGKTTLVQRLCKDDQVQG-----KFKDDIFYVTVSKNP 230 (695)
Q Consensus 165 ~~~~vGr~~~~~~l~~~L-~----~--~~~~vv~I--~G~gGiGKTtLa~~~~~~~~~~~-----~f~~~~~wv~~~~~~ 230 (695)
+..++||+.++++|..++ . . ...+.+.| +|++|+||||||+.+++. ... .+...++|+++....
T Consensus 21 p~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 98 (412)
T 1w5s_A 21 PPELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKR--VSEAAAKEGLTVKQAYVNAFNAP 98 (412)
T ss_dssp CSSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHH--HHHHHHHTTCCEEEEEEEGGGCC
T ss_pred CCCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHH--HHHHHhccCCceeEEEEECCCCC
Confidence 467899999999999988 4 2 34567777 999999999999999984 322 234446788887778
Q ss_pred CHHHHHHHHHHhcCCCCCCC-CChHHHHHHHHHHHHhcCCCcEEEEEeCCCCCC------hHHHh----hhccC---C--
Q 042541 231 NVKAIVQKVLHHKGYPVPEF-QTDEAAINDLERFFKQMRIEAILLVLDDVWPGS------ESLLQ----KLGFQ---L-- 294 (695)
Q Consensus 231 ~~~~~~~~i~~~l~~~~~~~-~~~~~~~~~l~~~~~~l~~~~~LlVlDdv~~~~------~~~~~----~l~~~---~-- 294 (695)
+...++..++.+++...+.. .........+...+.. .+++++|||||++... ...+. .+... .
T Consensus 99 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~-~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~ 177 (412)
T 1w5s_A 99 NLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYV-ENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGV 177 (412)
T ss_dssp SHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHH-HTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSC
T ss_pred CHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHh-cCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCC
Confidence 89999999999987654321 1223334444444421 3679999999997632 22222 22111 1
Q ss_pred CCCEEEEEcCCCC-------------CCCCCeEecCCCChHHHHHHHHHhccCCCCCCCCCchHHHHHHHHhcC------
Q 042541 295 PDYKILVTSRSEF-------------PQFGSVHYLKPLTYEAARTLFLHSANLQDGNSYIPDENIVSKILRACK------ 355 (695)
Q Consensus 295 ~gs~iivTtR~~~-------------~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~------ 355 (695)
.+..+|+||+... ......+.+++++.++++++|...+..... ......+.+..|++.|+
T Consensus 178 ~~v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~ 256 (412)
T 1w5s_A 178 NRIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLR-DTVWEPRHLELISDVYGEDKGGD 256 (412)
T ss_dssp CBEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBC-TTSCCHHHHHHHHHHHCGGGTSC
T ss_pred ceEEEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCC-CCCCChHHHHHHHHHHHHhccCC
Confidence 3345777886431 112234999999999999999765431111 11123678899999999
Q ss_pred CchhHHHHHHHhh------CCC---CHHHHHHHHHHhcCCCCccCchhhHHHHHHHHHHhccHHHHHHHhhhcccC--CC
Q 042541 356 GCPLALKVVGGSL------CGK---HEVFWQRMVKECSRGESVFQSKNDILDCLGSSLDVLNNEVKECYLDLCSFP--ED 424 (695)
Q Consensus 356 G~PLai~~~~~~L------~~~---~~~~w~~~l~~~~~~~~~~~~~~~i~~~l~~s~~~L~~~~k~cf~~ls~fp--~~ 424 (695)
|.|..+..++... ... +.+.+...+..... ...+..++..||++.+.++..++.+. .+
T Consensus 257 G~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~~-----------~~~~~~~l~~l~~~~~~~l~aia~l~~~~~ 325 (412)
T 1w5s_A 257 GSARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSENEA-----------ASIQTHELEALSIHELIILRLIAEATLGGM 325 (412)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC-----------------CCSSSSSCHHHHHHHHHHHHHHHTTC
T ss_pred CcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc-----------cchHHHHHHcCCHHHHHHHHHHHHHHhcCC
Confidence 9997665554321 111 12333322222100 12334456789999999998888654 33
Q ss_pred cccChHHHHHHHHHhh----C---CChhHHHHHHHHHHhhccccchh
Q 042541 425 QRIPITALIDMWMELY----E---LVDDVFAITNLHELSSQNLVDRV 464 (695)
Q Consensus 425 ~~i~~~~Li~~W~~~~----~---~~~~~~~~~~l~~L~~~sLl~~~ 464 (695)
..++...+...+.... . +.. .....++++|++.+||...
T Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~L~~~gli~~~ 371 (412)
T 1w5s_A 326 EWINAGLLRQRYEDASLTMYNVKPRGY-TQYHIYLKHLTSLGLVDAK 371 (412)
T ss_dssp SSBCHHHHHHHHHHHHHHHSCCCCCCH-HHHHHHHHHHHHTTSEEEE
T ss_pred CCccHHHHHHHHHHHHHhhcCCCCCCH-HHHHHHHHHHHhCCCEEee
Confidence 3555655555443211 1 222 3677899999999999864
No 7
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.67 E-value=4.1e-15 Score=156.39 Aligned_cols=287 Identities=15% Similarity=0.100 Sum_probs=169.7
Q ss_pred CCCCCCCCcchHHHHHHHHHcCCceEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCCC-----CCHHHHHHH
Q 042541 164 PPVISPGLDVPLKELKMELFKDGRQFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSKN-----PNVKAIVQK 238 (695)
Q Consensus 164 ~~~~~vGr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~~-----~~~~~~~~~ 238 (695)
.+..|+||+.+++.|.+ +.. +++.|+|++|+|||||++++++. ... .++|+++... .+...++..
T Consensus 11 ~~~~~~gR~~el~~L~~-l~~---~~v~i~G~~G~GKT~L~~~~~~~--~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 80 (357)
T 2fna_A 11 NRKDFFDREKEIEKLKG-LRA---PITLVLGLRRTGKSSIIKIGINE--LNL----PYIYLDLRKFEERNYISYKDFLLE 80 (357)
T ss_dssp SGGGSCCCHHHHHHHHH-TCS---SEEEEEESTTSSHHHHHHHHHHH--HTC----CEEEEEGGGGTTCSCCCHHHHHHH
T ss_pred CHHHhcChHHHHHHHHH-hcC---CcEEEECCCCCCHHHHHHHHHHh--cCC----CEEEEEchhhccccCCCHHHHHHH
Confidence 45678999999999999 654 69999999999999999999873 322 2569988743 344555544
Q ss_pred HHHhcC--------------C----CCCCCC-C------hHHHHHHHHHHHHhcCCCcEEEEEeCCCCCCh-------HH
Q 042541 239 VLHHKG--------------Y----PVPEFQ-T------DEAAINDLERFFKQMRIEAILLVLDDVWPGSE-------SL 286 (695)
Q Consensus 239 i~~~l~--------------~----~~~~~~-~------~~~~~~~l~~~~~~l~~~~~LlVlDdv~~~~~-------~~ 286 (695)
+.+.+. . +.+... . .......+.+.+.....++++|||||++.... ..
T Consensus 81 l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~~~~~~~~~~~ 160 (357)
T 2fna_A 81 LQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVKLRGVNLLPA 160 (357)
T ss_dssp HHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGGGCTTCCCHHH
T ss_pred HHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhhccCchhHHHH
Confidence 443321 0 000000 0 00112233333322222499999999965321 12
Q ss_pred HhhhccCCCCCEEEEEcCCCC--------C-----CC---CCeEecCCCChHHHHHHHHHhccCCCCCCCCCchHHHHHH
Q 042541 287 LQKLGFQLPDYKILVTSRSEF--------P-----QF---GSVHYLKPLTYEAARTLFLHSANLQDGNSYIPDENIVSKI 350 (695)
Q Consensus 287 ~~~l~~~~~gs~iivTtR~~~--------~-----~~---~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~I 350 (695)
+..+....++.++|+|++... . .. ...+.+.+|+.+|+.+++.......... . .+ ...|
T Consensus 161 l~~~~~~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~--~--~~-~~~i 235 (357)
T 2fna_A 161 LAYAYDNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADID--F--KD-YEVV 235 (357)
T ss_dssp HHHHHHHCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCC--C--CC-HHHH
T ss_pred HHHHHHcCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCCC--C--Cc-HHHH
Confidence 333322235788999988641 0 11 2378999999999999998754211111 1 11 2889
Q ss_pred HHhcCCchhHHHHHHHhhCC-CCHHHHHHHHHHhcCCCCccCchhhHHHHHHHHH---HhccHHHHHHHhhhcccCCCcc
Q 042541 351 LRACKGCPLALKVVGGSLCG-KHEVFWQRMVKECSRGESVFQSKNDILDCLGSSL---DVLNNEVKECYLDLCSFPEDQR 426 (695)
Q Consensus 351 ~~~c~G~PLai~~~~~~L~~-~~~~~w~~~l~~~~~~~~~~~~~~~i~~~l~~s~---~~L~~~~k~cf~~ls~fp~~~~ 426 (695)
++.|+|+|+++..++..+.. .+...|-..+.+. ....+...+.-.+ ..||+..+..+..+|. +.
T Consensus 236 ~~~t~G~P~~l~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~l~~~~~~~~~l~~~~~~~l~~la~---g~- 303 (357)
T 2fna_A 236 YEKIGGIPGWLTYFGFIYLDNKNLDFAINQTLEY--------AKKLILKEFENFLHGREIARKRYLNIMRTLSK---CG- 303 (357)
T ss_dssp HHHHCSCHHHHHHHHHHHHHHCCHHHHHHHHHHH--------HHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTT---CB-
T ss_pred HHHhCCCHHHHHHHHHHHccccchHHHHHHHHHH--------HHHHHHHHHHHHhhccccccHHHHHHHHHHHc---CC-
Confidence 99999999999999876542 2333332111000 0011112222111 1688899999999988 22
Q ss_pred cChHHHHHHHHHhhC--CChhHHHHHHHHHHhhccccchhhccccCCCCCCCCCcceehhHHHHHHH
Q 042541 427 IPITALIDMWMELYE--LVDDVFAITNLHELSSQNLVDRVVTRKTAGDYGCYNDDFVMQHDLLRELT 491 (695)
Q Consensus 427 i~~~~Li~~W~~~~~--~~~~~~~~~~l~~L~~~sLl~~~~~~~~~~~~~~~~~~~~~mHdlv~~~a 491 (695)
+...+......... +... ....+++.|++.+||.... ..|.-.|++++++.
T Consensus 304 -~~~~l~~~~~~~~g~~~~~~-~~~~~L~~L~~~gli~~~~------------~~y~f~~~~~~~~l 356 (357)
T 2fna_A 304 -KWSDVKRALELEEGIEISDS-EIYNYLTQLTKHSWIIKEG------------EKYCPSEPLISLAF 356 (357)
T ss_dssp -CHHHHHHHHHHHHCSCCCHH-HHHHHHHHHHHTTSEEESS------------SCEEESSHHHHHHT
T ss_pred -CHHHHHHHHHHhcCCCCCHH-HHHHHHHHHHhCCCEEecC------------CEEEecCHHHHHhh
Confidence 44444432211112 4443 7789999999999998521 12333688988764
No 8
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.62 E-value=3.4e-15 Score=154.93 Aligned_cols=159 Identities=19% Similarity=0.270 Sum_probs=110.8
Q ss_pred cceEEeeecCCcccCCCCC-CCCCceEEEEEEccCccccCChhhcC---------CCCCcEEEEcccCCCCcccCccccc
Q 042541 528 NASLLSISTDETFSSNWPD-MQGPEVKVVVLNIRTKKYVLPDFLQK---------MDELKVLIVTNYGFSPAELNNFRVL 597 (695)
Q Consensus 528 ~~r~l~~~~~~~~~~~~~~-~~~~~l~~L~l~~~~~~~~~p~~~~~---------l~~Lr~L~l~~~~~~~~~~~~~~~l 597 (695)
..++|.+..+... ..+.. ..+++|+.|.++.|...+.+|..+.. +++|++|++++|.+. .++ ..+
T Consensus 128 ~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~--~lp--~~l 202 (328)
T 4fcg_A 128 GLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR--SLP--ASI 202 (328)
T ss_dssp TCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC--CCC--GGG
T ss_pred CCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC--cch--Hhh
Confidence 4555555544322 11211 24566666666666555556654433 666777777666553 222 236
Q ss_pred ccCCCCcEEEeccCCCCCcc-cccccccccEEeeccccCCcccccchhhhcccCCCccEEecccccccccCchhhcCCCC
Q 042541 598 SALSKLKKIRLEHVSLPNSL-ATVRMNHLQKVSLVMCNVGQVFRNSTFRISDAFPNLLEMDIDYCNDLIELPDGLCDIVS 676 (695)
Q Consensus 598 ~~l~~L~~L~L~~~~l~~lp-~i~~l~~L~~L~l~~~~i~~~~~~~~~~l~~~l~~L~~L~l~~c~~l~~lP~~i~~L~~ 676 (695)
+.+++|++|+|++|.+..+| .++++++|++|+|++|.+.+..|..+. .+++|++|++++|+.++.+|..++++++
T Consensus 203 ~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~----~l~~L~~L~L~~n~~~~~~p~~~~~l~~ 278 (328)
T 4fcg_A 203 ANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFG----GRAPLKRLILKDCSNLLTLPLDIHRLTQ 278 (328)
T ss_dssp GGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTCCBCCCCTT----CCCCCCEEECTTCTTCCBCCTTGGGCTT
T ss_pred cCCCCCCEEEccCCCCCcCchhhccCCCCCEEECcCCcchhhhHHHhc----CCCCCCEEECCCCCchhhcchhhhcCCC
Confidence 77788888888888888777 788888888888888776666665554 7888999999988888888988899999
Q ss_pred CceeecccccCCCCCCCCC
Q 042541 677 MEKLRITNCHRLSALPEGI 695 (695)
Q Consensus 677 L~~L~l~~~~~l~~lP~~i 695 (695)
|++|+|++|+.++.+|.++
T Consensus 279 L~~L~L~~n~~~~~iP~~l 297 (328)
T 4fcg_A 279 LEKLDLRGCVNLSRLPSLI 297 (328)
T ss_dssp CCEEECTTCTTCCCCCGGG
T ss_pred CCEEeCCCCCchhhccHHH
Confidence 9999999988888888753
No 9
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.62 E-value=3.1e-15 Score=155.19 Aligned_cols=161 Identities=16% Similarity=0.237 Sum_probs=112.8
Q ss_pred ccceEEeeecCCcccCCCCC-CCCCceEEEEEEccCccccCChhhcCCCCCcEEEEcccCCCCcccCcc------ccccc
Q 042541 527 NNASLLSISTDETFSSNWPD-MQGPEVKVVVLNIRTKKYVLPDFLQKMDELKVLIVTNYGFSPAELNNF------RVLSA 599 (695)
Q Consensus 527 ~~~r~l~~~~~~~~~~~~~~-~~~~~l~~L~l~~~~~~~~~p~~~~~l~~Lr~L~l~~~~~~~~~~~~~------~~l~~ 599 (695)
...++|.+..+... ..+.. ..+++|+.|.++.+... .+|..+.++++|++|++++|.........+ ..++.
T Consensus 104 ~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~ 181 (328)
T 4fcg_A 104 SHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQG 181 (328)
T ss_dssp TTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEE
T ss_pred CCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhcc
Confidence 35667776655433 22222 35777888888777555 677778888888888888765432211111 11345
Q ss_pred CCCCcEEEeccCCCCCcc-cccccccccEEeeccccCCcccccchhhhcccCCCccEEecccccccccCchhhcCCCCCc
Q 042541 600 LSKLKKIRLEHVSLPNSL-ATVRMNHLQKVSLVMCNVGQVFRNSTFRISDAFPNLLEMDIDYCNDLIELPDGLCDIVSME 678 (695)
Q Consensus 600 l~~L~~L~L~~~~l~~lp-~i~~l~~L~~L~l~~~~i~~~~~~~~~~l~~~l~~L~~L~l~~c~~l~~lP~~i~~L~~L~ 678 (695)
+++|++|++++|.++.+| .++++++|++|+|++|.++.+|+.+. .+++|++|++++|+..+.+|..++.+++|+
T Consensus 182 l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~-----~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~ 256 (328)
T 4fcg_A 182 LVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIH-----HLPKLEELDLRGCTALRNYPPIFGGRAPLK 256 (328)
T ss_dssp STTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCCCCGGGG-----GCTTCCEEECTTCTTCCBCCCCTTCCCCCC
T ss_pred CCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCcCchhhc-----cCCCCCEEECcCCcchhhhHHHhcCCCCCC
Confidence 778888888888888888 78888888888888888877776544 778888888888877778888888888888
Q ss_pred eeecccccCCCCCCCC
Q 042541 679 KLRITNCHRLSALPEG 694 (695)
Q Consensus 679 ~L~l~~~~~l~~lP~~ 694 (695)
+|++++|+.++.+|..
T Consensus 257 ~L~L~~n~~~~~~p~~ 272 (328)
T 4fcg_A 257 RLILKDCSNLLTLPLD 272 (328)
T ss_dssp EEECTTCTTCCBCCTT
T ss_pred EEECCCCCchhhcchh
Confidence 8888888777777764
No 10
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=99.58 E-value=1.4e-15 Score=129.69 Aligned_cols=78 Identities=18% Similarity=0.176 Sum_probs=73.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHhhhHHHHHHHHh--hhccCCChHHHHHHHHHHHHHHHHHHhccc
Q 042541 9 ALLGAVFGELLKAVSEEKDKAVTFKDRLEQLESTLRNSIPWIEEIEKL--NQVLDRPKQETENLVRMMEQVEQLVRKCSK 86 (695)
Q Consensus 9 a~~~~v~~kl~~~l~~~~~~~~~~~~~l~~L~~~L~~i~~~l~~ae~~--~~~~~~~~~wl~~l~~~~~d~ed~ld~~~~ 86 (695)
|+++++++|+.+++.+|+.+..++++++++|+++|+.|+++|.||+.+ +..+..++.|+++||+++||+|||||+|.+
T Consensus 1 a~v~~ll~KL~~ll~~E~~l~~gv~~~i~~Lk~eL~~m~a~L~da~~~~~~~~d~~vk~W~~~vrdlaYD~ED~iD~f~~ 80 (115)
T 3qfl_A 1 AAISNLIPKLGELLTEEFKLHKGVKKNIEDLGKELESMNAALIKIGEVPREQLDSQDKLWADEVRELSYVIEDVVDKFLV 80 (115)
T ss_dssp CTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357889999999999999999999999999999999999999999987 456777899999999999999999999997
No 11
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.51 E-value=1.9e-12 Score=137.79 Aligned_cols=284 Identities=17% Similarity=0.128 Sum_probs=181.4
Q ss_pred CCCCCCCcchHHHHHHHHHc----CCce--EEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCCCCCHHHHHHH
Q 042541 165 PVISPGLDVPLKELKMELFK----DGRQ--FIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSKNPNVKAIVQK 238 (695)
Q Consensus 165 ~~~~vGr~~~~~~l~~~L~~----~~~~--vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~~~~~~~~~~~ 238 (695)
|+.++||+.+++++..++.. .... .+.|+|++|+|||||++.+++ .........++|++++...+...++..
T Consensus 16 p~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~ 93 (389)
T 1fnn_A 16 PKRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWE--LYKDKTTARFVYINGFIYRNFTAIIGE 93 (389)
T ss_dssp CSCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHH--HHTTSCCCEEEEEETTTCCSHHHHHHH
T ss_pred CCCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHH--HHhhhcCeeEEEEeCccCCCHHHHHHH
Confidence 36789999999999998873 3334 899999999999999999987 333322334678888888888999999
Q ss_pred HHHhcCCCCCCC-CChHHHHHHHHHHHHhcCCCcEEEEEeCCCCCChHHHhhhcc---C--C---CCCEEEEEcCCCC--
Q 042541 239 VLHHKGYPVPEF-QTDEAAINDLERFFKQMRIEAILLVLDDVWPGSESLLQKLGF---Q--L---PDYKILVTSRSEF-- 307 (695)
Q Consensus 239 i~~~l~~~~~~~-~~~~~~~~~l~~~~~~l~~~~~LlVlDdv~~~~~~~~~~l~~---~--~---~gs~iivTtR~~~-- 307 (695)
++..++...+.. .........+...+.. .+++.+|||||++.........+.. . . .+..+|++|+...
T Consensus 94 l~~~l~~~~~~~~~~~~~~~~~l~~~l~~-~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~ 172 (389)
T 1fnn_A 94 IARSLNIPFPRRGLSRDEFLALLVEHLRE-RDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVL 172 (389)
T ss_dssp HHHHTTCCCCSSCCCHHHHHHHHHHHHHH-TTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHH
T ss_pred HHHHhCccCCCCCCCHHHHHHHHHHHHhh-cCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHH
Confidence 999987654322 1233444444444432 4678999999998776443333321 1 1 3667888777551
Q ss_pred -C-------C-CCCeEecCCCChHHHHHHHHHhccCCCCCCCCCchHHHHHHHHhc---------CCchhHHHHHHHhhC
Q 042541 308 -P-------Q-FGSVHYLKPLTYEAARTLFLHSANLQDGNSYIPDENIVSKILRAC---------KGCPLALKVVGGSLC 369 (695)
Q Consensus 308 -~-------~-~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c---------~G~PLai~~~~~~L~ 369 (695)
. . ....+.+++++.++..+++...+..... ...-..+....|++.+ +|.|..+..+.....
T Consensus 173 ~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~ 251 (389)
T 1fnn_A 173 NNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLA-EGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSA 251 (389)
T ss_dssp HTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBC-TTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHH
T ss_pred HHhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcC-CCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHH
Confidence 1 0 1126999999999999999887542111 0122467888999999 788765544432211
Q ss_pred ------CC---CHHHHHHHHHHhcCCCCccCchhhHHHHHHHHHHhccHHHHHHHhhhcccC---CCcccChHHHHHHHH
Q 042541 370 ------GK---HEVFWQRMVKECSRGESVFQSKNDILDCLGSSLDVLNNEVKECYLDLCSFP---EDQRIPITALIDMWM 437 (695)
Q Consensus 370 ------~~---~~~~w~~~l~~~~~~~~~~~~~~~i~~~l~~s~~~L~~~~k~cf~~ls~fp---~~~~i~~~~Li~~W~ 437 (695)
+. +.+.....+..... ..+...+..||++.+.++..++.+. .+..+....+...+.
T Consensus 252 ~~a~~~~~~~i~~~~v~~~~~~~~~------------~~~~~~l~~l~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~~~~ 319 (389)
T 1fnn_A 252 YAAQQNGRKHIAPEDVRKSSKEVLF------------GISEEVLIGLPLHEKLFLLAIVRSLKISHTPYITFGDAEESYK 319 (389)
T ss_dssp HHHHHTTCSSCCHHHHHHHHHHHSC------------CCCHHHHHHSCHHHHHHHHHHHHHHHHHCSSCEEHHHHHHHHH
T ss_pred HHHHHhCCCCcCHHHHHHHHHHHhh------------hhHHHHHHcCCHHHHHHHHHHHHHHhhccCCCccHHHHHHHHH
Confidence 11 22222223322211 1123446788888888887777654 222456666666554
Q ss_pred Hh----h--CCChhHHHHHHHHHHhhccccchhh
Q 042541 438 EL----Y--ELVDDVFAITNLHELSSQNLVDRVV 465 (695)
Q Consensus 438 ~~----~--~~~~~~~~~~~l~~L~~~sLl~~~~ 465 (695)
.. + .+.. ....+++++|...++|....
T Consensus 320 ~~~~~~~~~~~~~-~~~~~~l~~L~~~gli~~~~ 352 (389)
T 1fnn_A 320 IVCEEYGERPRVH-SQLWSYLNDLREKGIVETRQ 352 (389)
T ss_dssp HHHHHTTCCCCCH-HHHHHHHHHHHHTTSSEEEE
T ss_pred HHHHHcCCCCCCH-HHHHHHHHHHHhCCCeEEee
Confidence 31 1 1223 37789999999999998744
No 12
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.49 E-value=3.1e-12 Score=135.79 Aligned_cols=283 Identities=15% Similarity=0.112 Sum_probs=174.8
Q ss_pred CCCCCCCcchHHHHHHHHH----cCCceEEEEEcCCCCcHHHHHHHHhccccc----cccC-CCcEEEEEeCCCC-CHHH
Q 042541 165 PVISPGLDVPLKELKMELF----KDGRQFIVVSAPGGYGKTTLVQRLCKDDQV----QGKF-KDDIFYVTVSKNP-NVKA 234 (695)
Q Consensus 165 ~~~~vGr~~~~~~l~~~L~----~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~----~~~f-~~~~~wv~~~~~~-~~~~ 234 (695)
|+.++||+.+++++..++. ....+.+.|+|++|+||||||+.+++...- ...+ ...++|+++.... +...
T Consensus 19 p~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 98 (384)
T 2qby_B 19 FKEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQA 98 (384)
T ss_dssp CSSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHHH
T ss_pred CCCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHHH
Confidence 3678999999999988776 334678999999999999999999983211 1123 4447788887777 8888
Q ss_pred HHHHHHHhc-CCCCCCC-CChHHHHHHHHHHHHhcCCCcEEEEEeCCCCCC----hHH-HhhhccCCCCCEEEEEcCCCC
Q 042541 235 IVQKVLHHK-GYPVPEF-QTDEAAINDLERFFKQMRIEAILLVLDDVWPGS----ESL-LQKLGFQLPDYKILVTSRSEF 307 (695)
Q Consensus 235 ~~~~i~~~l-~~~~~~~-~~~~~~~~~l~~~~~~l~~~~~LlVlDdv~~~~----~~~-~~~l~~~~~gs~iivTtR~~~ 307 (695)
++..++..+ +...+.. ......... +.+.+..++.+|||||++... ... +..+.....+..+|+||+...
T Consensus 99 ~~~~l~~~l~~~~~~~~~~~~~~~~~~---l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~iI~~t~~~~ 175 (384)
T 2qby_B 99 VLSSLAGKLTGFSVPKHGINLGEYIDK---IKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSDANISVIMISNDIN 175 (384)
T ss_dssp HHHHHHHHHHCSCCCSSSSCTHHHHHH---HHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTSSSCEEEEEECSSTT
T ss_pred HHHHHHHHhcCCCCCCCCCCHHHHHHH---HHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcCCcceEEEEEECCCc
Confidence 999988887 3222111 112222333 334455555699999996532 122 333333236788998988652
Q ss_pred ----------CCCCCeEecCCCChHHHHHHHHHhccCCCCCCCCCchHHHHHHHHhcC---Cchh-HHHHHHHh--hC-C
Q 042541 308 ----------PQFGSVHYLKPLTYEAARTLFLHSANLQDGNSYIPDENIVSKILRACK---GCPL-ALKVVGGS--LC-G 370 (695)
Q Consensus 308 ----------~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~---G~PL-ai~~~~~~--L~-~ 370 (695)
...+..+.+++++.++..++|...+...... ..-..+..+.|++.|+ |.|. ++..+-.. +. +
T Consensus 176 ~~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~~ 254 (384)
T 2qby_B 176 VRDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIK-GTYDDEILSYIAAISAKEHGDARKAVNLLFRAAQLASG 254 (384)
T ss_dssp TTTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSCT-TSCCSHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTS
T ss_pred hHhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhccc-CCcCHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhcC
Confidence 1223489999999999999999875321110 1123566788888888 9887 33333222 22 1
Q ss_pred ---CCHHHHHHHHHHhcCCCCccCchhhHHHHHHHHHHhccHHHHHHHhhhcccCCCcccChHHHHHHHHHhh--CCChh
Q 042541 371 ---KHEVFWQRMVKECSRGESVFQSKNDILDCLGSSLDVLNNEVKECYLDLCSFPEDQRIPITALIDMWMELY--ELVDD 445 (695)
Q Consensus 371 ---~~~~~w~~~l~~~~~~~~~~~~~~~i~~~l~~s~~~L~~~~k~cf~~ls~fp~~~~i~~~~Li~~W~~~~--~~~~~ 445 (695)
-+.+.+...+.+.. ...+..++..|+++.+..+..++....+..+. .......-..+ ....
T Consensus 255 ~~~i~~~~v~~~~~~~~------------~~~~~~~~~~l~~~~~~~l~al~~~~~~~~~~-~~~~~~~~~~g~~~~~~- 320 (384)
T 2qby_B 255 GGIIRKEHVDKAIVDYE------------QERLIEAVKALPFHYKLALRSLIESEDVMSAH-KMYTDLCNKFKQKPLSY- 320 (384)
T ss_dssp SSCCCHHHHHHHHHHHH------------HHHHHHHHHSSCHHHHHHHHHHHTCCBHHHHH-HHHHHHHHHTTCCCCCH-
T ss_pred CCccCHHHHHHHHHHHh------------cchHHHHHHcCCHHHHHHHHHHHHhcccChHH-HHHHHHHHHcCCCCCCH-
Confidence 14556655554321 23466678889988888777776611101111 11111111122 1222
Q ss_pred HHHHHHHHHHhhccccchhh
Q 042541 446 VFAITNLHELSSQNLVDRVV 465 (695)
Q Consensus 446 ~~~~~~l~~L~~~sLl~~~~ 465 (695)
....++++.|...|+++...
T Consensus 321 ~~~~~~l~~L~~~gli~~~~ 340 (384)
T 2qby_B 321 RRFSDIISELDMFGIVKIRI 340 (384)
T ss_dssp HHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHHhCCCEEEEe
Confidence 47889999999999998643
No 13
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.47 E-value=2.4e-12 Score=136.71 Aligned_cols=284 Identities=14% Similarity=0.084 Sum_probs=176.2
Q ss_pred CCCCCCCcchHHHHHHHHH----cCCceEEEEEcCCCCcHHHHHHHHhcccccccc-----CCCcEEEEEeCCCCCHHHH
Q 042541 165 PVISPGLDVPLKELKMELF----KDGRQFIVVSAPGGYGKTTLVQRLCKDDQVQGK-----FKDDIFYVTVSKNPNVKAI 235 (695)
Q Consensus 165 ~~~~vGr~~~~~~l~~~L~----~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~-----f~~~~~wv~~~~~~~~~~~ 235 (695)
++.++||+.+++++..++. ....+.+.|+|++|+||||||+.+++. .... ....++|+++....+...+
T Consensus 18 p~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~--~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 95 (387)
T 2v1u_A 18 PDVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRR--LEARASSLGVLVKPIYVNARHRETPYRV 95 (387)
T ss_dssp CSCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHH--HHHHHHHHTCCEEEEEEETTTSCSHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHH--HHHHHhccCCCeEEEEEECCcCCCHHHH
Confidence 4678999999999999885 245678999999999999999999873 3221 1334678888888899999
Q ss_pred HHHHHHhcCCCCCCCCC-hHHHHHHHHHHHHhcCCCcEEEEEeCCCCCCh-----HHHhh-hccC-----CCCCEEEEEc
Q 042541 236 VQKVLHHKGYPVPEFQT-DEAAINDLERFFKQMRIEAILLVLDDVWPGSE-----SLLQK-LGFQ-----LPDYKILVTS 303 (695)
Q Consensus 236 ~~~i~~~l~~~~~~~~~-~~~~~~~l~~~~~~l~~~~~LlVlDdv~~~~~-----~~~~~-l~~~-----~~gs~iivTt 303 (695)
+..++..++...+.... .......+...+.. .+++.+|||||++.... ..+.. +... ..+..+|+||
T Consensus 96 ~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~-~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t 174 (387)
T 2v1u_A 96 ASAIAEAVGVRVPFTGLSVGEVYERLVKRLSR-LRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGIT 174 (387)
T ss_dssp HHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTT-SCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEEC
T ss_pred HHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhc-cCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEE
Confidence 99999998765433221 22323333333321 46789999999975421 22222 2111 3456777777
Q ss_pred CCCCC----------CCCC-eEecCCCChHHHHHHHHHhccCCCCCCCCCchHHHHHHHHhcC---CchhHHH-HHHHhh
Q 042541 304 RSEFP----------QFGS-VHYLKPLTYEAARTLFLHSANLQDGNSYIPDENIVSKILRACK---GCPLALK-VVGGSL 368 (695)
Q Consensus 304 R~~~~----------~~~~-~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~---G~PLai~-~~~~~L 368 (695)
+.... ..+. .+.+++++.++..+++...+...... ..-..+..+.|++.++ |.|..+. .+..+.
T Consensus 175 ~~~~~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~G~~r~~~~~l~~a~ 253 (387)
T 2v1u_A 175 NSLGFVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEAFNP-GVLDPDVVPLCAALAAREHGDARRALDLLRVAG 253 (387)
T ss_dssp SCSTTSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHHBCT-TTBCSSHHHHHHHHHHSSSCCHHHHHHHHHHHH
T ss_pred CCCchHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhhccC-CCCCHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 76511 1222 78999999999999998875321110 1112456788888888 9994333 322221
Q ss_pred C-----C-C--CHHHHHHHHHHhcCCCCccCchhhHHHHHHHHHHhccHHHHHHHhhhc-ccCCCcccChHHHHHHHHH-
Q 042541 369 C-----G-K--HEVFWQRMVKECSRGESVFQSKNDILDCLGSSLDVLNNEVKECYLDLC-SFPEDQRIPITALIDMWME- 438 (695)
Q Consensus 369 ~-----~-~--~~~~w~~~l~~~~~~~~~~~~~~~i~~~l~~s~~~L~~~~k~cf~~ls-~fp~~~~i~~~~Li~~W~~- 438 (695)
. + . +.+.+...+.... ...+.-++..|+++.+..+..++ ++-....+....+.+....
T Consensus 254 ~~a~~~~~~~i~~~~v~~a~~~~~------------~~~~~~~~~~l~~~~~~~l~a~~~~~~~~~~~~~~~~~~~~~~~ 321 (387)
T 2v1u_A 254 EIAERRREERVRREHVYSARAEIE------------RDRVSEVVRTLPLHAKLVLLSIMMLEDGGRPASTGEIYERYKEL 321 (387)
T ss_dssp HHHHHTTCSCBCHHHHHHHHHHHH------------HHHHHHHHHSSCHHHHHHHHHHHHHSSSSCCEEHHHHHHHHHHH
T ss_pred HHHHHcCCCCcCHHHHHHHHHHHh------------hchHHHHHHcCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHH
Confidence 1 1 1 3445544444321 22455677889998887776665 4432234555544444322
Q ss_pred ---hh--CCChhHHHHHHHHHHhhccccchhh
Q 042541 439 ---LY--ELVDDVFAITNLHELSSQNLVDRVV 465 (695)
Q Consensus 439 ---~~--~~~~~~~~~~~l~~L~~~sLl~~~~ 465 (695)
.+ .... ..+.+++++|...|+++...
T Consensus 322 ~~~~~~~~~~~-~~~~~~l~~L~~~gli~~~~ 352 (387)
T 2v1u_A 322 TSTLGLEHVTL-RRVSGIISELDMLGIVKSRV 352 (387)
T ss_dssp HHHTTCCCCCH-HHHHHHHHHHHHTTSEEEEE
T ss_pred HHhcCCCCCCH-HHHHHHHHHHHhCCCeEEEe
Confidence 11 1122 47889999999999998743
No 14
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.46 E-value=8.8e-13 Score=132.74 Aligned_cols=158 Identities=17% Similarity=0.255 Sum_probs=87.0
Q ss_pred ccceEEeeecCCcccCCC-CCCCCCceEEEEEEccCccccCChhhcCCCCCcEEEEcccCCCCcccCcccccccCCCCcE
Q 042541 527 NNASLLSISTDETFSSNW-PDMQGPEVKVVVLNIRTKKYVLPDFLQKMDELKVLIVTNYGFSPAELNNFRVLSALSKLKK 605 (695)
Q Consensus 527 ~~~r~l~~~~~~~~~~~~-~~~~~~~l~~L~l~~~~~~~~~p~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~ 605 (695)
...++|.+..+....... ....+++|+.|.++.+......+..+.++++|++|++++|.+... + ...+..+++|++
T Consensus 37 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~--~-~~~~~~l~~L~~ 113 (270)
T 2o6q_A 37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQAL--P-IGVFDQLVNLAE 113 (270)
T ss_dssp TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCC--C-TTTTTTCSSCCE
T ss_pred CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcC--C-HhHcccccCCCE
Confidence 455666665543322111 122566677777766644433333456667777777776654311 1 112455666666
Q ss_pred EEeccCCCCCcc--cccccccccEEeeccccCCcccccchhhhcccCCCccEEecccccccccCchh-hcCCCCCceeec
Q 042541 606 IRLEHVSLPNSL--ATVRMNHLQKVSLVMCNVGQVFRNSTFRISDAFPNLLEMDIDYCNDLIELPDG-LCDIVSMEKLRI 682 (695)
Q Consensus 606 L~L~~~~l~~lp--~i~~l~~L~~L~l~~~~i~~~~~~~~~~l~~~l~~L~~L~l~~c~~l~~lP~~-i~~L~~L~~L~l 682 (695)
|++++|.++.+| .++.+++|++|+|++|.++.+++..+. .+++|+.|++++| .+..+|.. +.++++|++|++
T Consensus 114 L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~----~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L 188 (270)
T 2o6q_A 114 LRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFD----KLTSLKELRLYNN-QLKRVPEGAFDKLTELKTLKL 188 (270)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT----TCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEEC
T ss_pred EECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHcc----CCcccceeEecCC-cCcEeChhHhccCCCcCEEEC
Confidence 666666666555 455666666666666666666655444 5666666666654 34444433 556666666666
Q ss_pred ccccCCCCCCC
Q 042541 683 TNCHRLSALPE 693 (695)
Q Consensus 683 ~~~~~l~~lP~ 693 (695)
++|. +..+|.
T Consensus 189 ~~N~-l~~~~~ 198 (270)
T 2o6q_A 189 DNNQ-LKRVPE 198 (270)
T ss_dssp CSSC-CSCCCT
T ss_pred CCCc-CCcCCH
Confidence 6643 555554
No 15
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.46 E-value=1.9e-13 Score=126.88 Aligned_cols=136 Identities=17% Similarity=0.197 Sum_probs=114.2
Q ss_pred CCCceEEEEEEccCcc-ccCChhhcCCCCCcEEEEcccCCCCcccCcccccccCCCCcEEEeccCCCCC-cc-ccccccc
Q 042541 548 QGPEVKVVVLNIRTKK-YVLPDFLQKMDELKVLIVTNYGFSPAELNNFRVLSALSKLKKIRLEHVSLPN-SL-ATVRMNH 624 (695)
Q Consensus 548 ~~~~l~~L~l~~~~~~-~~~p~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~-lp-~i~~l~~ 624 (695)
.+++++.|.++.+... +.+|..+..+++|++|++++|.+... ..++.+++|++|++++|.+.. +| .++++++
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-----~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 96 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-----SNLPKLPKLKKLELSENRIFGGLDMLAEKLPN 96 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-----SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTT
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-----hhhccCCCCCEEECcCCcCchHHHHHHhhCCC
Confidence 3467888888887655 57888889999999999999877432 448899999999999999996 77 7778999
Q ss_pred ccEEeeccccCCcccc-cchhhhcccCCCccEEecccccccccCch----hhcCCCCCceeecccccCCCCCCCC
Q 042541 625 LQKVSLVMCNVGQVFR-NSTFRISDAFPNLLEMDIDYCNDLIELPD----GLCDIVSMEKLRITNCHRLSALPEG 694 (695)
Q Consensus 625 L~~L~l~~~~i~~~~~-~~~~~l~~~l~~L~~L~l~~c~~l~~lP~----~i~~L~~L~~L~l~~~~~l~~lP~~ 694 (695)
|++|++++|.++.++. ..+. .+++|++|++++| .+..+|. .+..+++|++|++++|. ...+|.+
T Consensus 97 L~~L~Ls~N~l~~~~~~~~l~----~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~~n~-~~~~~~~ 165 (168)
T 2ell_A 97 LTHLNLSGNKLKDISTLEPLK----KLECLKSLDLFNC-EVTNLNDYRESVFKLLPQLTYLDGYDRE-DQEAPDS 165 (168)
T ss_dssp CCEEECBSSSCCSSGGGGGGS----SCSCCCEEECCSS-GGGTSTTHHHHHHTTCSSCCEETTEETT-SCBCCSS
T ss_pred CCEEeccCCccCcchhHHHHh----cCCCCCEEEeeCC-cCcchHHHHHHHHHhCccCcEecCCCCC-hhhcccc
Confidence 9999999999998763 3343 8999999999997 5677776 79999999999999976 7888864
No 16
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.45 E-value=7.2e-13 Score=131.80 Aligned_cols=154 Identities=13% Similarity=0.159 Sum_probs=122.0
Q ss_pred CccceEEeeecCCcccCCCC-CCCCCceEEEEEEccCccccCChhhcCCCCCcEEEEcccCCCCcccCcccccccCCCCc
Q 042541 526 PNNASLLSISTDETFSSNWP-DMQGPEVKVVVLNIRTKKYVLPDFLQKMDELKVLIVTNYGFSPAELNNFRVLSALSKLK 604 (695)
Q Consensus 526 ~~~~r~l~~~~~~~~~~~~~-~~~~~~l~~L~l~~~~~~~~~p~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~ 604 (695)
+...+.|.+..+........ ...+++|+.|.++.+......|..+..+++|++|++++|.+... + ...+..+++|+
T Consensus 34 ~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~--~-~~~~~~l~~L~ 110 (251)
T 3m19_A 34 PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASL--P-LGVFDHLTQLD 110 (251)
T ss_dssp CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCC--C-TTTTTTCTTCC
T ss_pred CCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCccccc--C-hhHhcccCCCC
Confidence 45677888776554332222 23688999999998877777777889999999999999877421 1 12367889999
Q ss_pred EEEeccCCCCCcc--cccccccccEEeeccccCCcccccchhhhcccCCCccEEecccccccccCch-hhcCCCCCceee
Q 042541 605 KIRLEHVSLPNSL--ATVRMNHLQKVSLVMCNVGQVFRNSTFRISDAFPNLLEMDIDYCNDLIELPD-GLCDIVSMEKLR 681 (695)
Q Consensus 605 ~L~L~~~~l~~lp--~i~~l~~L~~L~l~~~~i~~~~~~~~~~l~~~l~~L~~L~l~~c~~l~~lP~-~i~~L~~L~~L~ 681 (695)
+|+|++|.++.+| .++.+++|++|+|++|.++.+++..+. .+++|++|+|++| .+..+|. .+..+++|++|+
T Consensus 111 ~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~----~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~ 185 (251)
T 3m19_A 111 KLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFD----KLTNLQTLSLSTN-QLQSVPHGAFDRLGKLQTIT 185 (251)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT----TCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEE
T ss_pred EEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcC----cCcCCCEEECCCC-cCCccCHHHHhCCCCCCEEE
Confidence 9999999999888 568899999999999999999887665 8999999999996 4566665 688999999999
Q ss_pred cccccC
Q 042541 682 ITNCHR 687 (695)
Q Consensus 682 l~~~~~ 687 (695)
+++|+.
T Consensus 186 l~~N~~ 191 (251)
T 3m19_A 186 LFGNQF 191 (251)
T ss_dssp CCSCCB
T ss_pred eeCCce
Confidence 999773
No 17
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.43 E-value=1.4e-12 Score=132.42 Aligned_cols=137 Identities=16% Similarity=0.142 Sum_probs=80.4
Q ss_pred CCCceEEEEEEccC-ccccCChhhcCCCCCcEEEEcccCCCCcccCcccccccCCCCcEEEeccCCCCCcc--ccccccc
Q 042541 548 QGPEVKVVVLNIRT-KKYVLPDFLQKMDELKVLIVTNYGFSPAELNNFRVLSALSKLKKIRLEHVSLPNSL--ATVRMNH 624 (695)
Q Consensus 548 ~~~~l~~L~l~~~~-~~~~~p~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~lp--~i~~l~~ 624 (695)
.+++|+.|.++.+. .....|..+..+++|++|++++|.+.... ...+..+++|++|++++|.+..+| .++++++
T Consensus 78 ~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~---~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 154 (285)
T 1ozn_A 78 GLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELG---PGLFRGLAALQYLYLQDNALQALPDDTFRDLGN 154 (285)
T ss_dssp TCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCC---TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred CccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEEC---HhHhhCCcCCCEEECCCCcccccCHhHhccCCC
Confidence 45666666666654 33333555666666666666666543110 122556666666666666666555 4666666
Q ss_pred ccEEeeccccCCcccccchhhhcccCCCccEEecccccccccCchhhcCCCCCceeecccccCCCCCC
Q 042541 625 LQKVSLVMCNVGQVFRNSTFRISDAFPNLLEMDIDYCNDLIELPDGLCDIVSMEKLRITNCHRLSALP 692 (695)
Q Consensus 625 L~~L~l~~~~i~~~~~~~~~~l~~~l~~L~~L~l~~c~~l~~lP~~i~~L~~L~~L~l~~~~~l~~lP 692 (695)
|++|++++|.++.+++..+. .+++|+.|++++|......|..++++++|+.|++++|. +..+|
T Consensus 155 L~~L~l~~n~l~~~~~~~~~----~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~ 217 (285)
T 1ozn_A 155 LTHLFLHGNRISSVPERAFR----GLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANN-LSALP 217 (285)
T ss_dssp CCEEECCSSCCCEECTTTTT----TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CSCCC
T ss_pred ccEEECCCCcccccCHHHhc----CccccCEEECCCCcccccCHhHccCcccccEeeCCCCc-CCcCC
Confidence 77777766666666665444 56666666666654333345566666666666666654 44444
No 18
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.43 E-value=1e-12 Score=132.34 Aligned_cols=158 Identities=13% Similarity=0.161 Sum_probs=123.8
Q ss_pred CccceEEeeecCCcccCCCCCCCCCceEEEEEEccCccccCChhhcCCCCCcEEEEcccCCCCcccCcccccccCCCCcE
Q 042541 526 PNNASLLSISTDETFSSNWPDMQGPEVKVVVLNIRTKKYVLPDFLQKMDELKVLIVTNYGFSPAELNNFRVLSALSKLKK 605 (695)
Q Consensus 526 ~~~~r~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~p~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~ 605 (695)
....++|.+..+.... ......+++|+.|.++.+......|..+..+++|++|++++|.+... . ...++.+++|++
T Consensus 62 l~~L~~L~l~~n~l~~-~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~--~-~~~~~~l~~L~~ 137 (272)
T 3rfs_A 62 LPNVRYLALGGNKLHD-ISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSL--P-DGVFDKLTNLTY 137 (272)
T ss_dssp CTTCCEEECTTSCCCC-CGGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCC--C-TTTTTTCTTCCE
T ss_pred CCCCcEEECCCCCCCC-chhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCcc--C-HHHhccCCCCCE
Confidence 3567788876654322 22234788999999988877666666789999999999999877421 1 122678999999
Q ss_pred EEeccCCCCCcc--cccccccccEEeeccccCCcccccchhhhcccCCCccEEecccccccccCch-hhcCCCCCceeec
Q 042541 606 IRLEHVSLPNSL--ATVRMNHLQKVSLVMCNVGQVFRNSTFRISDAFPNLLEMDIDYCNDLIELPD-GLCDIVSMEKLRI 682 (695)
Q Consensus 606 L~L~~~~l~~lp--~i~~l~~L~~L~l~~~~i~~~~~~~~~~l~~~l~~L~~L~l~~c~~l~~lP~-~i~~L~~L~~L~l 682 (695)
|++++|.++.+| .++++++|++|++++|.++.+++..+. .+++|++|++++|. +..+|. .++.+++|++|++
T Consensus 138 L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~----~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l 212 (272)
T 3rfs_A 138 LNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFD----KLTQLKDLRLYQNQ-LKSVPDGVFDRLTSLQYIWL 212 (272)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT----TCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEEC
T ss_pred EECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhc----CCccCCEEECCCCc-CCccCHHHHhCCcCCCEEEc
Confidence 999999999887 578999999999999999998888766 89999999999975 555554 4789999999999
Q ss_pred ccccCCCCCC
Q 042541 683 TNCHRLSALP 692 (695)
Q Consensus 683 ~~~~~l~~lP 692 (695)
++|+..+..|
T Consensus 213 ~~N~~~~~~~ 222 (272)
T 3rfs_A 213 HDNPWDCTCP 222 (272)
T ss_dssp CSSCBCCCTT
T ss_pred cCCCccccCc
Confidence 9988665554
No 19
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.43 E-value=1.5e-12 Score=129.41 Aligned_cols=136 Identities=13% Similarity=0.179 Sum_probs=116.9
Q ss_pred CCceEEEEEEccCccccCChhhcCCCCCcEEEEcccCCCCcccCcccccccCCCCcEEEeccCCCCCcc--ccccccccc
Q 042541 549 GPEVKVVVLNIRTKKYVLPDFLQKMDELKVLIVTNYGFSPAELNNFRVLSALSKLKKIRLEHVSLPNSL--ATVRMNHLQ 626 (695)
Q Consensus 549 ~~~l~~L~l~~~~~~~~~p~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~lp--~i~~l~~L~ 626 (695)
.++++.|.++.+......|..+.++++|++|++++|.+... ....+..+++|++|+|++|.++.+| .++.+++|+
T Consensus 34 ~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~---~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 110 (251)
T 3m19_A 34 PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTL---SAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLD 110 (251)
T ss_dssp CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCC---CTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred CCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCcc---CHhHhccCCcCCEEECCCCcccccChhHhcccCCCC
Confidence 36799999988877777777899999999999999877432 1223788999999999999999888 778999999
Q ss_pred EEeeccccCCcccccchhhhcccCCCccEEecccccccccCch-hhcCCCCCceeecccccCCCCCCC
Q 042541 627 KVSLVMCNVGQVFRNSTFRISDAFPNLLEMDIDYCNDLIELPD-GLCDIVSMEKLRITNCHRLSALPE 693 (695)
Q Consensus 627 ~L~l~~~~i~~~~~~~~~~l~~~l~~L~~L~l~~c~~l~~lP~-~i~~L~~L~~L~l~~~~~l~~lP~ 693 (695)
+|+|++|.++.+++..+. .+++|++|+|++| .+..+|. .++.+++|++|+|++|. +..+|+
T Consensus 111 ~L~L~~N~l~~~~~~~~~----~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~ 172 (251)
T 3m19_A 111 KLYLGGNQLKSLPSGVFD----RLTKLKELRLNTN-QLQSIPAGAFDKLTNLQTLSLSTNQ-LQSVPH 172 (251)
T ss_dssp EEECCSSCCCCCCTTTTT----TCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CSCCCT
T ss_pred EEEcCCCcCCCcChhHhc----cCCcccEEECcCC-cCCccCHHHcCcCcCCCEEECCCCc-CCccCH
Confidence 999999999999998776 8999999999996 5777876 58999999999999976 777775
No 20
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.42 E-value=4.4e-12 Score=134.66 Aligned_cols=283 Identities=13% Similarity=0.114 Sum_probs=172.3
Q ss_pred CCCCCCCcchHHHHHHHHH----cCCceEEEEEcCCCCcHHHHHHHHhccccccccC--CCcEEEEEeCCCCCHHHHHHH
Q 042541 165 PVISPGLDVPLKELKMELF----KDGRQFIVVSAPGGYGKTTLVQRLCKDDQVQGKF--KDDIFYVTVSKNPNVKAIVQK 238 (695)
Q Consensus 165 ~~~~vGr~~~~~~l~~~L~----~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f--~~~~~wv~~~~~~~~~~~~~~ 238 (695)
++.|+||+.+++.+.+++. ....+.+.|+|++|+||||||+.+++ .....+ ...++|+++....+...++..
T Consensus 19 p~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~--~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 96 (386)
T 2qby_A 19 PDELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLS--KLHKKFLGKFKHVYINTRQIDTPYRVLAD 96 (386)
T ss_dssp CSCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHH--HHHHHTCSSCEEEEEEHHHHCSHHHHHHH
T ss_pred CCCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHH--HHHHHhcCCceEEEEECCCCCCHHHHHHH
Confidence 4678999999999999887 34467899999999999999999998 443333 334678888777788888888
Q ss_pred HHHhcCCCCCCCC-ChHHHHHHHHHHHHhcCCCcEEEEEeCCCCCC----hHHHhhh---c-c-CCCCCEEEEEcCCCC-
Q 042541 239 VLHHKGYPVPEFQ-TDEAAINDLERFFKQMRIEAILLVLDDVWPGS----ESLLQKL---G-F-QLPDYKILVTSRSEF- 307 (695)
Q Consensus 239 i~~~l~~~~~~~~-~~~~~~~~l~~~~~~l~~~~~LlVlDdv~~~~----~~~~~~l---~-~-~~~gs~iivTtR~~~- 307 (695)
++..++...+... ........+...+.. .+++.+||+|+++... ...+..+ . . ...+..+|+||+...
T Consensus 97 i~~~l~~~~~~~~~~~~~~~~~l~~~l~~-~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~~ 175 (386)
T 2qby_A 97 LLESLDVKVPFTGLSIAELYRRLVKAVRD-YGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVKF 175 (386)
T ss_dssp HTTTTSCCCCSSSCCHHHHHHHHHHHHHT-CCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGGG
T ss_pred HHHHhCCCCCCCCCCHHHHHHHHHHHHhc-cCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCCh
Confidence 8888865433211 223334444444432 4568999999985421 1112222 1 1 223456677776541
Q ss_pred ---C------CCC-CeEecCCCChHHHHHHHHHhccCCCCCCCCCchHHHHHHHHhcC---CchhHHHHHHHhh-C----
Q 042541 308 ---P------QFG-SVHYLKPLTYEAARTLFLHSANLQDGNSYIPDENIVSKILRACK---GCPLALKVVGGSL-C---- 369 (695)
Q Consensus 308 ---~------~~~-~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~---G~PLai~~~~~~L-~---- 369 (695)
. ... ..+.+++++.++..+++...+..... ...-..+....|++.++ |.|..+..+.... .
T Consensus 176 ~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a~~ 254 (386)
T 2qby_A 176 VDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFK-PGVLPDNVIKLCAALAAREHGDARRALDLLRVSGEIAER 254 (386)
T ss_dssp GGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBC-SSCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred HhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhcc-CCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh
Confidence 0 111 37999999999999999876532111 11224667788888888 9998444332221 0
Q ss_pred -CC---CHHHHHHHHHHhcCCCCccCchhhHHHHHHHHHHhccHHHHHHHhhhcccCC-C-cccChHHHHHHHHH----h
Q 042541 370 -GK---HEVFWQRMVKECSRGESVFQSKNDILDCLGSSLDVLNNEVKECYLDLCSFPE-D-QRIPITALIDMWME----L 439 (695)
Q Consensus 370 -~~---~~~~w~~~l~~~~~~~~~~~~~~~i~~~l~~s~~~L~~~~k~cf~~ls~fp~-~-~~i~~~~Li~~W~~----~ 439 (695)
+. +.+.+...+.+. ....+...+..||++.+..+..++.+.+ + ..+....+.+.... .
T Consensus 255 ~~~~~i~~~~v~~a~~~~------------~~~~~~~~~~~l~~~~~~il~ai~~~~~~g~~~~~~~~l~~~~~~~~~~~ 322 (386)
T 2qby_A 255 MKDTKVKEEYVYMAKEEI------------ERDRVRDIILTLPFHSKLVLMAVVSISSEENVVSTTGAVYETYLNICKKL 322 (386)
T ss_dssp TTCSSCCHHHHHHHHHHH------------HHHHHHHHHHTSCHHHHHHHHHHHHHC-----CEEHHHHHHHHHHHHHHH
T ss_pred cCCCccCHHHHHHHHHHH------------hhchHHHHHHcCCHHHHHHHHHHHHHHhcCCCceeHHHHHHHHHHHHHhc
Confidence 11 234444333321 1234566678888887777766663321 1 22334444333221 1
Q ss_pred hCCCh--hHHHHHHHHHHhhccccchh
Q 042541 440 YELVD--DVFAITNLHELSSQNLVDRV 464 (695)
Q Consensus 440 ~~~~~--~~~~~~~l~~L~~~sLl~~~ 464 (695)
+ ..+ ......+++.|...++|+..
T Consensus 323 g-~~~~~~~~~~~~l~~L~~~gli~~~ 348 (386)
T 2qby_A 323 G-VEAVTQRRVSDIINELDMVGILTAK 348 (386)
T ss_dssp T-CCCCCHHHHHHHHHHHHHHTSEEEE
T ss_pred C-CCCCCHHHHHHHHHHHHhCCCEEEE
Confidence 2 221 13678899999999999864
No 21
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.40 E-value=8.1e-13 Score=153.31 Aligned_cols=164 Identities=12% Similarity=0.062 Sum_probs=129.9
Q ss_pred ccceEEeeecCCcccCCCCC-CCCCceEEEEEEccCccccCChhhcCCCCCcEEEEcccCCCC---cccC----------
Q 042541 527 NNASLLSISTDETFSSNWPD-MQGPEVKVVVLNIRTKKYVLPDFLQKMDELKVLIVTNYGFSP---AELN---------- 592 (695)
Q Consensus 527 ~~~r~l~~~~~~~~~~~~~~-~~~~~l~~L~l~~~~~~~~~p~~~~~l~~Lr~L~l~~~~~~~---~~~~---------- 592 (695)
...+.+.+..+......+.. ..+++|+.|.++.|...+.+|..+..+++|++|++++|.+.+ ..+.
T Consensus 490 ~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~ 569 (768)
T 3rgz_A 490 TNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANF 569 (768)
T ss_dssp TTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCST
T ss_pred CCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhc
Confidence 45667777655433222222 257888888888888888888888899999999998875431 1100
Q ss_pred ------------------------------------------------------cccccccCCCCcEEEeccCCCC-Ccc
Q 042541 593 ------------------------------------------------------NFRVLSALSKLKKIRLEHVSLP-NSL 617 (695)
Q Consensus 593 ------------------------------------------------------~~~~l~~l~~L~~L~L~~~~l~-~lp 617 (695)
.++.++.+++|++|+|++|.++ .+|
T Consensus 570 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip 649 (768)
T 3rgz_A 570 IAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIP 649 (768)
T ss_dssp TCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCC
T ss_pred cccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCC
Confidence 0112455778999999999998 889
Q ss_pred -cccccccccEEeeccccCCcccccchhhhcccCCCccEEecccccccccCchhhcCCCCCceeecccccCCCCCCCC
Q 042541 618 -ATVRMNHLQKVSLVMCNVGQVFRNSTFRISDAFPNLLEMDIDYCNDLIELPDGLCDIVSMEKLRITNCHRLSALPEG 694 (695)
Q Consensus 618 -~i~~l~~L~~L~l~~~~i~~~~~~~~~~l~~~l~~L~~L~l~~c~~l~~lP~~i~~L~~L~~L~l~~~~~l~~lP~~ 694 (695)
.++++++|++|+|++|.+++..|..+. .+++|+.|+|++|...+.+|..+++|++|++|++++|+..|.+|.+
T Consensus 650 ~~l~~l~~L~~L~Ls~N~l~g~ip~~l~----~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~ 723 (768)
T 3rgz_A 650 KEIGSMPYLFILNLGHNDISGSIPDEVG----DLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM 723 (768)
T ss_dssp GGGGGCTTCCEEECCSSCCCSCCCGGGG----GCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSS
T ss_pred HHHhccccCCEEeCcCCccCCCCChHHh----CCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCc
Confidence 999999999999999999977777666 8999999999999888899999999999999999999988889864
No 22
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.40 E-value=1e-12 Score=125.41 Aligned_cols=148 Identities=12% Similarity=0.192 Sum_probs=114.0
Q ss_pred ccceEEeeecCCcccCCCCCCCCCceEEEEEEccCccccCChhhcCCCCCcEEEEcccCCCCcccCcccccccCCCCcEE
Q 042541 527 NNASLLSISTDETFSSNWPDMQGPEVKVVVLNIRTKKYVLPDFLQKMDELKVLIVTNYGFSPAELNNFRVLSALSKLKKI 606 (695)
Q Consensus 527 ~~~r~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~p~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L 606 (695)
...+++.+...... ..+.-..+++|+.|.++.+. ...+..+..+++|++|++++|.+.... ++.++.+++|++|
T Consensus 44 ~~L~~L~l~~n~i~-~l~~l~~l~~L~~L~l~~n~--~~~~~~l~~l~~L~~L~l~~n~l~~~~---~~~l~~l~~L~~L 117 (197)
T 4ezg_A 44 NSLTYITLANINVT-DLTGIEYAHNIKDLTINNIH--ATNYNPISGLSNLERLRIMGKDVTSDK---IPNLSGLTSLTLL 117 (197)
T ss_dssp HTCCEEEEESSCCS-CCTTGGGCTTCSEEEEESCC--CSCCGGGTTCTTCCEEEEECTTCBGGG---SCCCTTCTTCCEE
T ss_pred CCccEEeccCCCcc-ChHHHhcCCCCCEEEccCCC--CCcchhhhcCCCCCEEEeECCccCccc---ChhhcCCCCCCEE
Confidence 35778888765433 22223468899999999882 233447889999999999998774222 2347889999999
Q ss_pred EeccCCCCC-cc-cccccccccEEeecccc-CCcccccchhhhcccCCCccEEecccccccccCchhhcCCCCCceeecc
Q 042541 607 RLEHVSLPN-SL-ATVRMNHLQKVSLVMCN-VGQVFRNSTFRISDAFPNLLEMDIDYCNDLIELPDGLCDIVSMEKLRIT 683 (695)
Q Consensus 607 ~L~~~~l~~-lp-~i~~l~~L~~L~l~~~~-i~~~~~~~~~~l~~~l~~L~~L~l~~c~~l~~lP~~i~~L~~L~~L~l~ 683 (695)
++++|.+.. .| .++++++|++|++++|. ++.++ ... .+++|+.|++++| .+..+| .+..+++|++|+++
T Consensus 118 ~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~-----~l~~L~~L~l~~n-~i~~~~-~l~~l~~L~~L~l~ 189 (197)
T 4ezg_A 118 DISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLK-----TLPELKSLNIQFD-GVHDYR-GIEDFPKLNQLYAF 189 (197)
T ss_dssp ECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGG-----GCSSCCEEECTTB-CCCCCT-TGGGCSSCCEEEEC
T ss_pred EecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhc-----CCCCCCEEECCCC-CCcChH-HhccCCCCCEEEee
Confidence 999999984 66 89999999999999998 87765 333 8999999999997 467787 79999999999999
Q ss_pred cccCCC
Q 042541 684 NCHRLS 689 (695)
Q Consensus 684 ~~~~l~ 689 (695)
+|+ ++
T Consensus 190 ~N~-i~ 194 (197)
T 4ezg_A 190 SQT-IG 194 (197)
T ss_dssp BC----
T ss_pred Ccc-cC
Confidence 966 54
No 23
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.40 E-value=3.8e-12 Score=122.62 Aligned_cols=135 Identities=13% Similarity=0.175 Sum_probs=82.1
Q ss_pred CCceEEEEEEccCccccCChhhcCCCCCcEEEEcccCCCCcccCcccccccCCCCcEEEeccCCCCCcc--ccccccccc
Q 042541 549 GPEVKVVVLNIRTKKYVLPDFLQKMDELKVLIVTNYGFSPAELNNFRVLSALSKLKKIRLEHVSLPNSL--ATVRMNHLQ 626 (695)
Q Consensus 549 ~~~l~~L~l~~~~~~~~~p~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~lp--~i~~l~~L~ 626 (695)
.++++.|.++.+......+..+..+++|++|++++|.+.. ++ ...+..+++|++|++++|.+..+| .++++++|+
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--~~-~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 103 (208)
T 2o6s_A 27 PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQS--LP-NGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLK 103 (208)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCC--CC-TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCc--cC-hhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCC
Confidence 3456666666665444444456667777777777665531 11 112456667777777777776666 356677777
Q ss_pred EEeeccccCCcccccchhhhcccCCCccEEecccccccccCchh-hcCCCCCceeecccccCCCCC
Q 042541 627 KVSLVMCNVGQVFRNSTFRISDAFPNLLEMDIDYCNDLIELPDG-LCDIVSMEKLRITNCHRLSAL 691 (695)
Q Consensus 627 ~L~l~~~~i~~~~~~~~~~l~~~l~~L~~L~l~~c~~l~~lP~~-i~~L~~L~~L~l~~~~~l~~l 691 (695)
+|++++|.++.+++..+. .+++|++|++++| .+..+|.. +..+++|++|++++|+..+..
T Consensus 104 ~L~L~~N~l~~~~~~~~~----~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~ 164 (208)
T 2o6s_A 104 ELALNTNQLQSLPDGVFD----KLTQLKDLRLYQN-QLKSVPDGVFDRLTSLQYIWLHDNPWDCTC 164 (208)
T ss_dssp EEECCSSCCCCCCTTTTT----TCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSCCBCCCT
T ss_pred EEEcCCCcCcccCHhHhc----cCCcCCEEECCCC-ccceeCHHHhccCCCccEEEecCCCeecCC
Confidence 777777777766665544 6677777777764 34555544 566777777777766544333
No 24
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.39 E-value=3.2e-12 Score=129.89 Aligned_cols=131 Identities=18% Similarity=0.152 Sum_probs=81.2
Q ss_pred CCCCceEEEEEEccCccccCChhhcCCCCCcEEEEcccCCCCcccCcccccccCCCCcEEEeccCCCCCcc--ccccccc
Q 042541 547 MQGPEVKVVVLNIRTKKYVLPDFLQKMDELKVLIVTNYGFSPAELNNFRVLSALSKLKKIRLEHVSLPNSL--ATVRMNH 624 (695)
Q Consensus 547 ~~~~~l~~L~l~~~~~~~~~p~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~lp--~i~~l~~ 624 (695)
..+++|+.|.++.+... .+|..+..+++|++|++++|.+... + ...+..+++|++|+|++|.+..+| .+..+++
T Consensus 74 ~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l--~-~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 149 (290)
T 1p9a_G 74 GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSL--P-LGALRGLGELQELYLKGNELKTLPPGLLTPTPK 149 (290)
T ss_dssp SCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCC--C-SSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTT
T ss_pred CCCCcCCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCccc--C-HHHHcCCCCCCEEECCCCCCCccChhhcccccC
Confidence 35566666666655332 4555666666677777766655311 1 122556666777777777666666 4556667
Q ss_pred ccEEeeccccCCcccccchhhhcccCCCccEEecccccccccCchhhcCCCCCceeeccccc
Q 042541 625 LQKVSLVMCNVGQVFRNSTFRISDAFPNLLEMDIDYCNDLIELPDGLCDIVSMEKLRITNCH 686 (695)
Q Consensus 625 L~~L~l~~~~i~~~~~~~~~~l~~~l~~L~~L~l~~c~~l~~lP~~i~~L~~L~~L~l~~~~ 686 (695)
|++|+|++|.++.+|+..+. .+++|++|++++| .+..+|.++..+.+|++|+|++|+
T Consensus 150 L~~L~L~~N~l~~l~~~~~~----~l~~L~~L~L~~N-~l~~ip~~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 150 LEKLSLANNNLTELPAGLLN----GLENLDTLLLQEN-SLYTIPKGFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp CCEEECTTSCCSCCCTTTTT----TCTTCCEEECCSS-CCCCCCTTTTTTCCCSEEECCSCC
T ss_pred CCEEECCCCcCCccCHHHhc----CcCCCCEEECCCC-cCCccChhhcccccCCeEEeCCCC
Confidence 77777777776666666554 5667777777664 456667666666677777776655
No 25
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.39 E-value=2.6e-12 Score=124.87 Aligned_cols=129 Identities=12% Similarity=0.117 Sum_probs=109.8
Q ss_pred CceEEEEEEccCccccCChhhcCCCCCcEEEEcccCCCCcccCcccccccCCCCcEEEeccCCCCCcc--cccccccccE
Q 042541 550 PEVKVVVLNIRTKKYVLPDFLQKMDELKVLIVTNYGFSPAELNNFRVLSALSKLKKIRLEHVSLPNSL--ATVRMNHLQK 627 (695)
Q Consensus 550 ~~l~~L~l~~~~~~~~~p~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~lp--~i~~l~~L~~ 627 (695)
++++.|.++.+......+..|..+++|++|+|++|.+... .+..+..+++|++|+|++|.++.+| .+..+++|++
T Consensus 32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~---~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~ 108 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISEL---APDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQL 108 (220)
T ss_dssp TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEE---CTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCc---CHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCE
Confidence 6788999988876666666899999999999999877421 1234788999999999999999999 5688999999
Q ss_pred EeeccccCCcccccchhhhcccCCCccEEecccccccccCch-hhcCCCCCceeeccccc
Q 042541 628 VSLVMCNVGQVFRNSTFRISDAFPNLLEMDIDYCNDLIELPD-GLCDIVSMEKLRITNCH 686 (695)
Q Consensus 628 L~l~~~~i~~~~~~~~~~l~~~l~~L~~L~l~~c~~l~~lP~-~i~~L~~L~~L~l~~~~ 686 (695)
|+|++|.++.+++..+. .+++|++|+|++| .+..+|. .+..+++|++|++++|+
T Consensus 109 L~L~~N~l~~~~~~~~~----~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 109 LLLNANKINCLRVDAFQ----DLHNLNLLSLYDN-KLQTIAKGTFSPLRAIQTMHLAQNP 163 (220)
T ss_dssp EECCSSCCCCCCTTTTT----TCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred EECCCCCCCEeCHHHcC----CCCCCCEEECCCC-cCCEECHHHHhCCCCCCEEEeCCCC
Confidence 99999999999888776 8999999999996 4666765 48899999999999976
No 26
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.39 E-value=2.7e-12 Score=130.45 Aligned_cols=158 Identities=18% Similarity=0.228 Sum_probs=119.6
Q ss_pred CccceEEeeecCCcccCCC-CCCCCCceEEEEEEccCccccCChhhcCCCCCcEEEEcccCCCCcccCcccccccCCCCc
Q 042541 526 PNNASLLSISTDETFSSNW-PDMQGPEVKVVVLNIRTKKYVLPDFLQKMDELKVLIVTNYGFSPAELNNFRVLSALSKLK 604 (695)
Q Consensus 526 ~~~~r~l~~~~~~~~~~~~-~~~~~~~l~~L~l~~~~~~~~~p~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~ 604 (695)
+...+.|.+..+....... ....+++|+.|.++.+.... +|.. ..+++|++|++++|.+. .++ ..+..+++|+
T Consensus 30 ~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~-~~l~~L~~L~Ls~N~l~--~l~--~~~~~l~~L~ 103 (290)
T 1p9a_G 30 PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQVD-GTLPVLGTLDLSHNQLQ--SLP--LLGQTLPALT 103 (290)
T ss_dssp CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-EECC-SCCTTCCEEECCSSCCS--SCC--CCTTTCTTCC
T ss_pred CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCc-ccCC-CCCCcCCEEECCCCcCC--cCc--hhhccCCCCC
Confidence 3567777776554322111 12367888888887775443 2322 67888999999888763 222 2367888999
Q ss_pred EEEeccCCCCCcc--cccccccccEEeeccccCCcccccchhhhcccCCCccEEecccccccccCchh-hcCCCCCceee
Q 042541 605 KIRLEHVSLPNSL--ATVRMNHLQKVSLVMCNVGQVFRNSTFRISDAFPNLLEMDIDYCNDLIELPDG-LCDIVSMEKLR 681 (695)
Q Consensus 605 ~L~L~~~~l~~lp--~i~~l~~L~~L~l~~~~i~~~~~~~~~~l~~~l~~L~~L~l~~c~~l~~lP~~-i~~L~~L~~L~ 681 (695)
+|++++|.++.+| .++++++|++|+|++|.++.+++..+. .+++|+.|++++| .+..+|.+ +..+++|++|+
T Consensus 104 ~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~----~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~ 178 (290)
T 1p9a_G 104 VLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLT----PTPKLEKLSLANN-NLTELPAGLLNGLENLDTLL 178 (290)
T ss_dssp EEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTT----TCTTCCEEECTTS-CCSCCCTTTTTTCTTCCEEE
T ss_pred EEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcc----cccCCCEEECCCC-cCCccCHHHhcCcCCCCEEE
Confidence 9999999999887 688999999999999999999888776 8999999999986 57788876 57899999999
Q ss_pred cccccCCCCCCCCC
Q 042541 682 ITNCHRLSALPEGI 695 (695)
Q Consensus 682 l~~~~~l~~lP~~i 695 (695)
+++|. +..+|.++
T Consensus 179 L~~N~-l~~ip~~~ 191 (290)
T 1p9a_G 179 LQENS-LYTIPKGF 191 (290)
T ss_dssp CCSSC-CCCCCTTT
T ss_pred CCCCc-CCccChhh
Confidence 99965 88888764
No 27
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.38 E-value=3.8e-12 Score=128.16 Aligned_cols=155 Identities=20% Similarity=0.291 Sum_probs=120.5
Q ss_pred cceEEeeecCCcccCCCCCCCCCceEEEEEEccCccccCChhhcCCCCCcEEEEcccCCCCcccCcccccccCCCCcEEE
Q 042541 528 NASLLSISTDETFSSNWPDMQGPEVKVVVLNIRTKKYVLPDFLQKMDELKVLIVTNYGFSPAELNNFRVLSALSKLKKIR 607 (695)
Q Consensus 528 ~~r~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~p~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~ 607 (695)
..+.+.+...... .......+++|+.|.++.+.... + +.+..+++|++|++++|.+... . ...++.+++|++|+
T Consensus 42 ~L~~L~l~~~~i~-~~~~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~l~~~--~-~~~~~~l~~L~~L~ 115 (272)
T 3rfs_A 42 SIDQIIANNSDIK-SVQGIQYLPNVRYLALGGNKLHD-I-SALKELTNLTYLILTGNQLQSL--P-NGVFDKLTNLKELV 115 (272)
T ss_dssp TCCEEECTTSCCC-CCTTGGGCTTCCEEECTTSCCCC-C-GGGTTCTTCCEEECTTSCCCCC--C-TTTTTTCTTCCEEE
T ss_pred ceeeeeeCCCCcc-cccccccCCCCcEEECCCCCCCC-c-hhhcCCCCCCEEECCCCccCcc--C-hhHhcCCcCCCEEE
Confidence 4555655544321 11122368999999998886543 3 4788999999999999877421 1 12268899999999
Q ss_pred eccCCCCCcc--cccccccccEEeeccccCCcccccchhhhcccCCCccEEecccccccccCchh-hcCCCCCceeeccc
Q 042541 608 LEHVSLPNSL--ATVRMNHLQKVSLVMCNVGQVFRNSTFRISDAFPNLLEMDIDYCNDLIELPDG-LCDIVSMEKLRITN 684 (695)
Q Consensus 608 L~~~~l~~lp--~i~~l~~L~~L~l~~~~i~~~~~~~~~~l~~~l~~L~~L~l~~c~~l~~lP~~-i~~L~~L~~L~l~~ 684 (695)
+++|.+..+| .++++++|++|++++|.++.+++..+. .+++|++|++++|. +..+|.. ++.+++|++|++++
T Consensus 116 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~----~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~ 190 (272)
T 3rfs_A 116 LVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFD----KLTNLTELDLSYNQ-LQSLPEGVFDKLTQLKDLRLYQ 190 (272)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT----TCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCS
T ss_pred CCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhc----cCccCCEEECCCCC-cCccCHHHhcCCccCCEEECCC
Confidence 9999999887 588999999999999999999988766 89999999999974 5666655 68999999999999
Q ss_pred ccCCCCCCCC
Q 042541 685 CHRLSALPEG 694 (695)
Q Consensus 685 ~~~l~~lP~~ 694 (695)
|. +..+|+.
T Consensus 191 N~-l~~~~~~ 199 (272)
T 3rfs_A 191 NQ-LKSVPDG 199 (272)
T ss_dssp SC-CSCCCTT
T ss_pred Cc-CCccCHH
Confidence 76 6666653
No 28
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.38 E-value=3.6e-12 Score=129.37 Aligned_cols=158 Identities=10% Similarity=0.114 Sum_probs=127.0
Q ss_pred CCccceEEeeecCCcccCCCC-CCCCCceEEEEEEccCccccCChhhcCCCCCcEEEEcccC-CCCcccCcccccccCCC
Q 042541 525 HPNNASLLSISTDETFSSNWP-DMQGPEVKVVVLNIRTKKYVLPDFLQKMDELKVLIVTNYG-FSPAELNNFRVLSALSK 602 (695)
Q Consensus 525 ~~~~~r~l~~~~~~~~~~~~~-~~~~~~l~~L~l~~~~~~~~~p~~~~~l~~Lr~L~l~~~~-~~~~~~~~~~~l~~l~~ 602 (695)
.+...+++.+..+........ ...+++|+.|.++.+......|..+.++++|++|++++|. +.. + ....+..+++
T Consensus 30 ~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~--~-~~~~~~~l~~ 106 (285)
T 1ozn_A 30 IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRS--V-DPATFHGLGR 106 (285)
T ss_dssp CCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCC--C-CTTTTTTCTT
T ss_pred CCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccc--c-CHHHhcCCcC
Confidence 355788888876654332222 2368899999999887777778899999999999999986 421 1 1233788999
Q ss_pred CcEEEeccCCCCCcc--cccccccccEEeeccccCCcccccchhhhcccCCCccEEecccccccccCchh-hcCCCCCce
Q 042541 603 LKKIRLEHVSLPNSL--ATVRMNHLQKVSLVMCNVGQVFRNSTFRISDAFPNLLEMDIDYCNDLIELPDG-LCDIVSMEK 679 (695)
Q Consensus 603 L~~L~L~~~~l~~lp--~i~~l~~L~~L~l~~~~i~~~~~~~~~~l~~~l~~L~~L~l~~c~~l~~lP~~-i~~L~~L~~ 679 (695)
|++|++++|.+..++ .++++++|++|++++|.++.+++..+. .+++|++|++++| .+..+|.. +..+++|++
T Consensus 107 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~----~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~ 181 (285)
T 1ozn_A 107 LHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFR----DLGNLTHLFLHGN-RISSVPERAFRGLHSLDR 181 (285)
T ss_dssp CCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT----TCTTCCEEECCSS-CCCEECTTTTTTCTTCCE
T ss_pred CCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhc----cCCCccEEECCCC-cccccCHHHhcCccccCE
Confidence 999999999999775 789999999999999999999887666 8999999999996 56777764 899999999
Q ss_pred eecccccCCCCC
Q 042541 680 LRITNCHRLSAL 691 (695)
Q Consensus 680 L~l~~~~~l~~l 691 (695)
|++++|. +..+
T Consensus 182 L~l~~n~-l~~~ 192 (285)
T 1ozn_A 182 LLLHQNR-VAHV 192 (285)
T ss_dssp EECCSSC-CCEE
T ss_pred EECCCCc-cccc
Confidence 9999987 4444
No 29
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.38 E-value=4.3e-12 Score=124.16 Aligned_cols=130 Identities=15% Similarity=0.218 Sum_probs=111.1
Q ss_pred CCceEEEEEEccCccccCChhhcCCCCCcEEEEcccCCCCcccCcccccccCCCCcEEEeccCCCCCcc--ccccccccc
Q 042541 549 GPEVKVVVLNIRTKKYVLPDFLQKMDELKVLIVTNYGFSPAELNNFRVLSALSKLKKIRLEHVSLPNSL--ATVRMNHLQ 626 (695)
Q Consensus 549 ~~~l~~L~l~~~~~~~~~p~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~lp--~i~~l~~L~ 626 (695)
.++++.|.++.+......|..|..+++|++|+|++|.+.. ++ ...+..+++|++|+|++|.++.+| .++.+++|+
T Consensus 39 ~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~--i~-~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~ 115 (229)
T 3e6j_A 39 PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGA--LP-VGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLK 115 (229)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC--CC-TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCC--cC-hhhcccCCCcCEEECCCCcCCccChhHhCcchhhC
Confidence 4789999999988877778889999999999999988732 21 123678999999999999999888 578999999
Q ss_pred EEeeccccCCcccccchhhhcccCCCccEEecccccccccCch-hhcCCCCCceeecccccC
Q 042541 627 KVSLVMCNVGQVFRNSTFRISDAFPNLLEMDIDYCNDLIELPD-GLCDIVSMEKLRITNCHR 687 (695)
Q Consensus 627 ~L~l~~~~i~~~~~~~~~~l~~~l~~L~~L~l~~c~~l~~lP~-~i~~L~~L~~L~l~~~~~ 687 (695)
+|+|++|.++.+|.... .+++|++|+|++| .+..+|. .+..+++|+.|++++|+.
T Consensus 116 ~L~Ls~N~l~~lp~~~~-----~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~ 171 (229)
T 3e6j_A 116 ELFMCCNKLTELPRGIE-----RLTHLTHLALDQN-QLKSIPHGAFDRLSSLTHAYLFGNPW 171 (229)
T ss_dssp EEECCSSCCCSCCTTGG-----GCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECTTSCB
T ss_pred eEeccCCcccccCcccc-----cCCCCCEEECCCC-cCCccCHHHHhCCCCCCEEEeeCCCc
Confidence 99999999998887765 8999999999996 5777775 488999999999999873
No 30
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.38 E-value=6.8e-12 Score=126.18 Aligned_cols=153 Identities=13% Similarity=0.146 Sum_probs=123.9
Q ss_pred CccceEEeeecCCcccCCCCC-CCCCceEEEEEEccCccccCChhhcCCCCCcEEEEcccCCCCcccCcccccccCCCCc
Q 042541 526 PNNASLLSISTDETFSSNWPD-MQGPEVKVVVLNIRTKKYVLPDFLQKMDELKVLIVTNYGFSPAELNNFRVLSALSKLK 604 (695)
Q Consensus 526 ~~~~r~l~~~~~~~~~~~~~~-~~~~~l~~L~l~~~~~~~~~p~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~ 604 (695)
....++|.+..+......... ..+++|+.|.++.+......+..+..+++|++|++++|.+.... ...++.+++|+
T Consensus 60 l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~---~~~~~~l~~L~ 136 (270)
T 2o6q_A 60 LTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLP---PRVFDSLTKLT 136 (270)
T ss_dssp CTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCC---TTTTTTCTTCC
T ss_pred CCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeC---HHHhCcCcCCC
Confidence 457788888765432221111 36899999999988766655667899999999999998774221 22368899999
Q ss_pred EEEeccCCCCCcc--cccccccccEEeeccccCCcccccchhhhcccCCCccEEecccccccccCchh-hcCCCCCceee
Q 042541 605 KIRLEHVSLPNSL--ATVRMNHLQKVSLVMCNVGQVFRNSTFRISDAFPNLLEMDIDYCNDLIELPDG-LCDIVSMEKLR 681 (695)
Q Consensus 605 ~L~L~~~~l~~lp--~i~~l~~L~~L~l~~~~i~~~~~~~~~~l~~~l~~L~~L~l~~c~~l~~lP~~-i~~L~~L~~L~ 681 (695)
+|+|++|.+..+| .++.+++|++|+|++|.++.+++..+. .+++|++|++++| .+..+|.. +..+++|++|+
T Consensus 137 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~----~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~ 211 (270)
T 2o6q_A 137 YLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFD----KLTELKTLKLDNN-QLKRVPEGAFDSLEKLKMLQ 211 (270)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTT----TCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEE
T ss_pred EEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhc----cCCCcCEEECCCC-cCCcCCHHHhccccCCCEEE
Confidence 9999999999888 588999999999999999999987766 8999999999997 56778765 88999999999
Q ss_pred ccccc
Q 042541 682 ITNCH 686 (695)
Q Consensus 682 l~~~~ 686 (695)
+++|+
T Consensus 212 l~~N~ 216 (270)
T 2o6q_A 212 LQENP 216 (270)
T ss_dssp CCSSC
T ss_pred ecCCC
Confidence 99987
No 31
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.38 E-value=1.1e-12 Score=135.17 Aligned_cols=131 Identities=11% Similarity=0.077 Sum_probs=64.5
Q ss_pred CCCceEEEEEEc-cCccccCChhhcCCCCCcEEEEcccCCCCcccCcccccccCCCCcEEEeccCCCC-Ccc-ccccccc
Q 042541 548 QGPEVKVVVLNI-RTKKYVLPDFLQKMDELKVLIVTNYGFSPAELNNFRVLSALSKLKKIRLEHVSLP-NSL-ATVRMNH 624 (695)
Q Consensus 548 ~~~~l~~L~l~~-~~~~~~~p~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~-~lp-~i~~l~~ 624 (695)
.+++|++|.++. +...+.+|..+.++++|++|++++|.+.. .+ +..++.+++|++|++++|.+. .+| .++++++
T Consensus 74 ~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~-~~--p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 150 (313)
T 1ogq_A 74 NLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSG-AI--PDFLSQIKTLVTLDFSYNALSGTLPPSISSLPN 150 (313)
T ss_dssp GCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEE-EC--CGGGGGCTTCCEEECCSSEEESCCCGGGGGCTT
T ss_pred CCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCC-cC--CHHHhCCCCCCEEeCCCCccCCcCChHHhcCCC
Confidence 455555555553 44444555555555555555555554421 11 112444455555555555444 444 4445555
Q ss_pred ccEEeeccccCC-------------------------cccccchhhhcccCCCccEEecccccccccCchhhcCCCCCce
Q 042541 625 LQKVSLVMCNVG-------------------------QVFRNSTFRISDAFPNLLEMDIDYCNDLIELPDGLCDIVSMEK 679 (695)
Q Consensus 625 L~~L~l~~~~i~-------------------------~~~~~~~~~l~~~l~~L~~L~l~~c~~l~~lP~~i~~L~~L~~ 679 (695)
|++|++++|.++ +..|..+. .++ |+.|++++|......|..++.+++|+.
T Consensus 151 L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~----~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 225 (313)
T 1ogq_A 151 LVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFA----NLN-LAFVDLSRNMLEGDASVLFGSDKNTQK 225 (313)
T ss_dssp CCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGG----GCC-CSEEECCSSEEEECCGGGCCTTSCCSE
T ss_pred CCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHh----CCc-ccEEECcCCcccCcCCHHHhcCCCCCE
Confidence 555555555444 33333222 333 555555554433345555566666666
Q ss_pred eeccccc
Q 042541 680 LRITNCH 686 (695)
Q Consensus 680 L~l~~~~ 686 (695)
|++++|.
T Consensus 226 L~L~~N~ 232 (313)
T 1ogq_A 226 IHLAKNS 232 (313)
T ss_dssp EECCSSE
T ss_pred EECCCCc
Confidence 6666654
No 32
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.37 E-value=9.6e-13 Score=135.47 Aligned_cols=138 Identities=14% Similarity=0.176 Sum_probs=116.5
Q ss_pred CceEEEEEEccCccc--cCChhhcCCCCCcEEEEcc-cCCCCcccCcccccccCCCCcEEEeccCCCC-Ccc-ccccccc
Q 042541 550 PEVKVVVLNIRTKKY--VLPDFLQKMDELKVLIVTN-YGFSPAELNNFRVLSALSKLKKIRLEHVSLP-NSL-ATVRMNH 624 (695)
Q Consensus 550 ~~l~~L~l~~~~~~~--~~p~~~~~l~~Lr~L~l~~-~~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~-~lp-~i~~l~~ 624 (695)
.+++.|.++++...+ .+|..+.++++|++|++++ |.+.. .+ +..++.+++|++|+|++|.+. .+| .++++++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~-~~--p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~ 126 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVG-PI--PPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKT 126 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEES-CC--CGGGGGCTTCSEEEEEEECCEEECCGGGGGCTT
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccc-cC--ChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCC
Confidence 578999999987777 8999999999999999995 65532 22 234889999999999999998 888 9999999
Q ss_pred ccEEeeccccCCcccccchhhhcccCCCccEEecccccccccCchhhcCCC-CCceeecccccCCCCCCCC
Q 042541 625 LQKVSLVMCNVGQVFRNSTFRISDAFPNLLEMDIDYCNDLIELPDGLCDIV-SMEKLRITNCHRLSALPEG 694 (695)
Q Consensus 625 L~~L~l~~~~i~~~~~~~~~~l~~~l~~L~~L~l~~c~~l~~lP~~i~~L~-~L~~L~l~~~~~l~~lP~~ 694 (695)
|++|++++|.+++..|..+. .+++|++|++++|...+.+|..++.++ +|++|++++|...+.+|..
T Consensus 127 L~~L~Ls~N~l~~~~p~~~~----~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~ 193 (313)
T 1ogq_A 127 LVTLDFSYNALSGTLPPSIS----SLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPT 193 (313)
T ss_dssp CCEEECCSSEEESCCCGGGG----GCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGG
T ss_pred CCEEeCCCCccCCcCChHHh----cCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChH
Confidence 99999999999966665555 899999999999866558999999998 9999999998755466643
No 33
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.37 E-value=5.5e-12 Score=124.39 Aligned_cols=158 Identities=16% Similarity=0.132 Sum_probs=115.7
Q ss_pred CccceEEeeecCC-cccCCC-CCCCCCceEEEEEEc-cCccccCChhhcCCCCCcEEEEcccCCCCcccCcccccccCCC
Q 042541 526 PNNASLLSISTDE-TFSSNW-PDMQGPEVKVVVLNI-RTKKYVLPDFLQKMDELKVLIVTNYGFSPAELNNFRVLSALSK 602 (695)
Q Consensus 526 ~~~~r~l~~~~~~-~~~~~~-~~~~~~~l~~L~l~~-~~~~~~~p~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~ 602 (695)
....+.+.+..+. ...... ....+++|+.|.++. +......+..|.++++|++|++++|.+.. ++. ++.+++
T Consensus 54 l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~--lp~---~~~l~~ 128 (239)
T 2xwt_C 54 LPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKM--FPD---LTKVYS 128 (239)
T ss_dssp CTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCS--CCC---CTTCCB
T ss_pred CCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCcc--ccc---cccccc
Confidence 3466777776654 211111 123677888888887 55544444577888888888888876632 332 555666
Q ss_pred Cc---EEEeccC-CCCCcc--ccccccccc-EEeeccccCCcccccchhhhcccCCCccEEecccccccccCch-hhcCC
Q 042541 603 LK---KIRLEHV-SLPNSL--ATVRMNHLQ-KVSLVMCNVGQVFRNSTFRISDAFPNLLEMDIDYCNDLIELPD-GLCDI 674 (695)
Q Consensus 603 L~---~L~L~~~-~l~~lp--~i~~l~~L~-~L~l~~~~i~~~~~~~~~~l~~~l~~L~~L~l~~c~~l~~lP~-~i~~L 674 (695)
|+ +|++++| .+..+| .+.++++|+ +|++++|.++.+|+..+ ..++|+.|++++|..+..+|. .+..+
T Consensus 129 L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~-----~~~~L~~L~L~~n~~l~~i~~~~~~~l 203 (239)
T 2xwt_C 129 TDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAF-----NGTKLDAVYLNKNKYLTVIDKDAFGGV 203 (239)
T ss_dssp CCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTT-----TTCEEEEEECTTCTTCCEECTTTTTTC
T ss_pred cccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhc-----CCCCCCEEEcCCCCCcccCCHHHhhcc
Confidence 66 9999999 888887 588899999 99999999998888777 448999999999766778865 47888
Q ss_pred -CCCceeecccccCCCCCCCC
Q 042541 675 -VSMEKLRITNCHRLSALPEG 694 (695)
Q Consensus 675 -~~L~~L~l~~~~~l~~lP~~ 694 (695)
++|+.|++++|+ +..+|..
T Consensus 204 ~~~L~~L~l~~N~-l~~l~~~ 223 (239)
T 2xwt_C 204 YSGPSLLDVSQTS-VTALPSK 223 (239)
T ss_dssp SBCCSEEECTTCC-CCCCCCT
T ss_pred ccCCcEEECCCCc-cccCChh
Confidence 999999999965 7888864
No 34
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.36 E-value=5.6e-12 Score=136.40 Aligned_cols=139 Identities=12% Similarity=0.115 Sum_probs=76.5
Q ss_pred CCCceEEEEEEccCccccCChhhcCCCCCcEEEEcccCCCCcccCcccccccCCCCcEEEeccCCCCCcccccccccccE
Q 042541 548 QGPEVKVVVLNIRTKKYVLPDFLQKMDELKVLIVTNYGFSPAELNNFRVLSALSKLKKIRLEHVSLPNSLATVRMNHLQK 627 (695)
Q Consensus 548 ~~~~l~~L~l~~~~~~~~~p~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~lp~i~~l~~L~~ 627 (695)
.+++|+.|.++.+......+..|.++++|++|++.+|..... ++ ...+..+++|++|+|++|.++.+|.+..+++|++
T Consensus 134 ~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~-i~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~ 211 (440)
T 3zyj_A 134 YLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSY-IS-EGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDE 211 (440)
T ss_dssp SCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCE-EC-TTTTTTCSSCCEEECTTSCCSSCCCCTTCSSCCE
T ss_pred ccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcce-eC-cchhhcccccCeecCCCCcCccccccCCCcccCE
Confidence 445555555555544333333455555555555554322111 10 1124556666666666666666665566666666
Q ss_pred EeeccccCCcccccchhhhcccCCCccEEecccccccccCchhhcCCCCCceeecccccCCCCCCC
Q 042541 628 VSLVMCNVGQVFRNSTFRISDAFPNLLEMDIDYCNDLIELPDGLCDIVSMEKLRITNCHRLSALPE 693 (695)
Q Consensus 628 L~l~~~~i~~~~~~~~~~l~~~l~~L~~L~l~~c~~l~~lP~~i~~L~~L~~L~l~~~~~l~~lP~ 693 (695)
|+|++|.++.+++..+. .+++|+.|++++|......|..+.++++|++|+|++|. +..+|.
T Consensus 212 L~Ls~N~l~~~~~~~~~----~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~ 272 (440)
T 3zyj_A 212 LDLSGNHLSAIRPGSFQ----GLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNN-LTLLPH 272 (440)
T ss_dssp EECTTSCCCEECTTTTT----TCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSC-CCCCCT
T ss_pred EECCCCccCccChhhhc----cCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCC-CCccCh
Confidence 66666666666555554 56666666666654333334446666666666666643 555554
No 35
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.35 E-value=7.5e-12 Score=135.93 Aligned_cols=138 Identities=12% Similarity=0.107 Sum_probs=80.7
Q ss_pred CCceEEEEEEccCccccCChhhcCCCCCcEEEEcccCCCCcccCcccccccCCCCcEEEeccCCCCCcccccccccccEE
Q 042541 549 GPEVKVVVLNIRTKKYVLPDFLQKMDELKVLIVTNYGFSPAELNNFRVLSALSKLKKIRLEHVSLPNSLATVRMNHLQKV 628 (695)
Q Consensus 549 ~~~l~~L~l~~~~~~~~~p~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~lp~i~~l~~L~~L 628 (695)
+++|+.|.++.|......+..|.++++|+.|++++|.... .++ ...+..+++|++|+|++|.+..+|.+..+++|++|
T Consensus 146 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~-~i~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L 223 (452)
T 3zyi_A 146 LSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLE-YIS-EGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEEL 223 (452)
T ss_dssp CTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCC-EEC-TTTTTTCTTCCEEECTTSCCSSCCCCTTCTTCCEE
T ss_pred cCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCcc-ccC-hhhccCCCCCCEEECCCCcccccccccccccccEE
Confidence 4455555554443332223344444555555554432211 000 11255667777777777777776666677777777
Q ss_pred eeccccCCcccccchhhhcccCCCccEEecccccccccCchhhcCCCCCceeecccccCCCCCCC
Q 042541 629 SLVMCNVGQVFRNSTFRISDAFPNLLEMDIDYCNDLIELPDGLCDIVSMEKLRITNCHRLSALPE 693 (695)
Q Consensus 629 ~l~~~~i~~~~~~~~~~l~~~l~~L~~L~l~~c~~l~~lP~~i~~L~~L~~L~l~~~~~l~~lP~ 693 (695)
+|++|.++.+++..+. .+++|+.|++++|......|..+..+++|+.|+|++|. +..+|.
T Consensus 224 ~Ls~N~l~~~~~~~~~----~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~ 283 (452)
T 3zyi_A 224 EMSGNHFPEIRPGSFH----GLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNN-LSSLPH 283 (452)
T ss_dssp ECTTSCCSEECGGGGT----TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CSCCCT
T ss_pred ECcCCcCcccCccccc----CccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCc-CCccCh
Confidence 7777777777666555 67777777777765433445557777777777777754 666664
No 36
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.35 E-value=5.8e-12 Score=122.42 Aligned_cols=131 Identities=13% Similarity=0.125 Sum_probs=108.6
Q ss_pred CCceEEEEEEccCccccCC-hhhcCCCCCcEEEEcccCCCCcccCcccccccCCCCcEEEeccCCCCCcc--cccccccc
Q 042541 549 GPEVKVVVLNIRTKKYVLP-DFLQKMDELKVLIVTNYGFSPAELNNFRVLSALSKLKKIRLEHVSLPNSL--ATVRMNHL 625 (695)
Q Consensus 549 ~~~l~~L~l~~~~~~~~~p-~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~lp--~i~~l~~L 625 (695)
.+.++.|.++.+......| ..|..+++|++|++++|.+.. +. ...+..+++|++|+|++|.+..+| .++.+++|
T Consensus 31 ~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~--i~-~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 107 (220)
T 2v70_A 31 PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITD--IE-EGAFEGASGVNEILLTSNRLENVQHKMFKGLESL 107 (220)
T ss_dssp CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCE--EC-TTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSC
T ss_pred CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCE--EC-HHHhCCCCCCCEEECCCCccCccCHhHhcCCcCC
Confidence 3456788888887665544 468999999999999987742 11 123788999999999999999877 68999999
Q ss_pred cEEeeccccCCcccccchhhhcccCCCccEEecccccccccC-chhhcCCCCCceeecccccC
Q 042541 626 QKVSLVMCNVGQVFRNSTFRISDAFPNLLEMDIDYCNDLIEL-PDGLCDIVSMEKLRITNCHR 687 (695)
Q Consensus 626 ~~L~l~~~~i~~~~~~~~~~l~~~l~~L~~L~l~~c~~l~~l-P~~i~~L~~L~~L~l~~~~~ 687 (695)
++|+|++|.++.+++..+. .+++|++|+|++|. +..+ |..+..+++|+.|++++|+.
T Consensus 108 ~~L~Ls~N~l~~~~~~~~~----~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l 165 (220)
T 2v70_A 108 KTLMLRSNRITCVGNDSFI----GLSSVRLLSLYDNQ-ITTVAPGAFDTLHSLSTLNLLANPF 165 (220)
T ss_dssp CEEECTTSCCCCBCTTSST----TCTTCSEEECTTSC-CCCBCTTTTTTCTTCCEEECCSCCE
T ss_pred CEEECCCCcCCeECHhHcC----CCccCCEEECCCCc-CCEECHHHhcCCCCCCEEEecCcCC
Confidence 9999999999999887776 89999999999975 5555 77899999999999999873
No 37
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.35 E-value=1.3e-12 Score=118.62 Aligned_cols=126 Identities=21% Similarity=0.256 Sum_probs=104.9
Q ss_pred CCceEEEEEEccCcc-ccCChhhcCCCCCcEEEEcccCCCCcccCcccccccCCCCcEEEeccCCCCC-cc-cccccccc
Q 042541 549 GPEVKVVVLNIRTKK-YVLPDFLQKMDELKVLIVTNYGFSPAELNNFRVLSALSKLKKIRLEHVSLPN-SL-ATVRMNHL 625 (695)
Q Consensus 549 ~~~l~~L~l~~~~~~-~~~p~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~-lp-~i~~l~~L 625 (695)
+++++.|.++.+... +.+|..+..+++|++|++++|.+... +.++.+++|++|++++|.+.. +| .++++++|
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-----~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L 90 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-----ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNL 90 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-----TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTC
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-----hhhhcCCCCCEEECCCCcccchHHHHhhhCCCC
Confidence 356777877777655 57888889999999999999877432 448899999999999999996 88 88889999
Q ss_pred cEEeeccccCCccc-ccchhhhcccCCCccEEecccccccccCch----hhcCCCCCceeeccc
Q 042541 626 QKVSLVMCNVGQVF-RNSTFRISDAFPNLLEMDIDYCNDLIELPD----GLCDIVSMEKLRITN 684 (695)
Q Consensus 626 ~~L~l~~~~i~~~~-~~~~~~l~~~l~~L~~L~l~~c~~l~~lP~----~i~~L~~L~~L~l~~ 684 (695)
++|++++|.++.++ +..+. .+++|++|++++| .+..+|. .++.+++|++|++++
T Consensus 91 ~~L~ls~N~i~~~~~~~~~~----~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 91 THLNLSGNKIKDLSTIEPLK----KLENLKSLDLFNC-EVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp CEEECTTSCCCSHHHHGGGG----GCTTCCEEECTTC-GGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred CEEECCCCcCCChHHHHHHh----hCCCCCEEeCcCC-cccchHHHHHHHHHHCCCcccccCCC
Confidence 99999999999865 23444 8999999999997 5677775 689999999999874
No 38
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.34 E-value=8e-12 Score=119.20 Aligned_cols=132 Identities=14% Similarity=0.213 Sum_probs=110.9
Q ss_pred CCCceEEEEEEccCccccCChhhcCCCCCcEEEEcccCCCCcccCcccccccCCCCcEEEeccCCCCC-cc-cccccccc
Q 042541 548 QGPEVKVVVLNIRTKKYVLPDFLQKMDELKVLIVTNYGFSPAELNNFRVLSALSKLKKIRLEHVSLPN-SL-ATVRMNHL 625 (695)
Q Consensus 548 ~~~~l~~L~l~~~~~~~~~p~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~-lp-~i~~l~~L 625 (695)
.+++++.|.++.+... .+| .+..+++|++|++++|.. ..++.+..+++|++|++++|.++. .| .++++++|
T Consensus 42 ~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~-----~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L 114 (197)
T 4ezg_A 42 QMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHA-----TNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSL 114 (197)
T ss_dssp HHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCC-----SCCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTC
T ss_pred hcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCC-----CcchhhhcCCCCCEEEeECCccCcccChhhcCCCCC
Confidence 4678899999887554 566 688999999999999854 233458899999999999999984 66 99999999
Q ss_pred cEEeeccccCCcccccchhhhcccCCCccEEecccccccccCchhhcCCCCCceeecccccCCCCCC
Q 042541 626 QKVSLVMCNVGQVFRNSTFRISDAFPNLLEMDIDYCNDLIELPDGLCDIVSMEKLRITNCHRLSALP 692 (695)
Q Consensus 626 ~~L~l~~~~i~~~~~~~~~~l~~~l~~L~~L~l~~c~~l~~lP~~i~~L~~L~~L~l~~~~~l~~lP 692 (695)
++|++++|.++...+..+. .+++|++|++++|..+..+| .++.+++|++|++++|. +..+|
T Consensus 115 ~~L~Ls~n~i~~~~~~~l~----~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~-i~~~~ 175 (197)
T 4ezg_A 115 TLLDISHSAHDDSILTKIN----TLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDG-VHDYR 175 (197)
T ss_dssp CEEECCSSBCBGGGHHHHT----TCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBC-CCCCT
T ss_pred CEEEecCCccCcHhHHHHh----hCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCC-CcChH
Confidence 9999999999875555554 89999999999987688898 69999999999999976 66665
No 39
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.33 E-value=3.3e-12 Score=148.20 Aligned_cols=161 Identities=15% Similarity=0.088 Sum_probs=128.2
Q ss_pred ccceEEeeecCCcccCCCCC-CCCCceEEEEEEccCccccCChhhcCCCCCcEEEEcccCCCCcccCcccccccCCCCcE
Q 042541 527 NNASLLSISTDETFSSNWPD-MQGPEVKVVVLNIRTKKYVLPDFLQKMDELKVLIVTNYGFSPAELNNFRVLSALSKLKK 605 (695)
Q Consensus 527 ~~~r~l~~~~~~~~~~~~~~-~~~~~l~~L~l~~~~~~~~~p~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~ 605 (695)
...+.+.+..+......+.. ..+++|+.|.++.+...+.+|..+..+++|++|++++|.+... + +..++.+++|++
T Consensus 394 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~-~--p~~~~~l~~L~~ 470 (768)
T 3rgz_A 394 NTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGE-I--PQELMYVKTLET 470 (768)
T ss_dssp CCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSC-C--CGGGGGCTTCCE
T ss_pred CCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCc-C--CHHHcCCCCceE
Confidence 35666666554332222222 2678888888888877778888888899999999988876422 2 234788899999
Q ss_pred EEeccCCCC-Ccc-cccccccccEEeeccccCCcccccchhhhcccCCCccEEecccccccccCchhhcCCCCCceeecc
Q 042541 606 IRLEHVSLP-NSL-ATVRMNHLQKVSLVMCNVGQVFRNSTFRISDAFPNLLEMDIDYCNDLIELPDGLCDIVSMEKLRIT 683 (695)
Q Consensus 606 L~L~~~~l~-~lp-~i~~l~~L~~L~l~~~~i~~~~~~~~~~l~~~l~~L~~L~l~~c~~l~~lP~~i~~L~~L~~L~l~ 683 (695)
|++++|.+. .+| .++++++|++|+|++|.+++..|..+. .+++|++|++++|...+.+|..++++++|+.|+++
T Consensus 471 L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~----~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls 546 (768)
T 3rgz_A 471 LILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIG----RLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLN 546 (768)
T ss_dssp EECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGG----GCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECC
T ss_pred EEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHh----cCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECC
Confidence 999999998 778 899999999999999999877776665 89999999999988777999999999999999999
Q ss_pred cccCCCCCCCC
Q 042541 684 NCHRLSALPEG 694 (695)
Q Consensus 684 ~~~~l~~lP~~ 694 (695)
+|+..+.+|.+
T Consensus 547 ~N~l~g~ip~~ 557 (768)
T 3rgz_A 547 TNLFNGTIPAA 557 (768)
T ss_dssp SSEEESBCCGG
T ss_pred CCccCCcCChH
Confidence 99888888864
No 40
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.32 E-value=7.3e-12 Score=120.61 Aligned_cols=156 Identities=13% Similarity=0.081 Sum_probs=122.3
Q ss_pred CccceEEeeecCCcccCCCC-CCCCCceEEEEEEccCccccCChhhcCCCCCcEEEEcccCCCCcccCcccccccCCCCc
Q 042541 526 PNNASLLSISTDETFSSNWP-DMQGPEVKVVVLNIRTKKYVLPDFLQKMDELKVLIVTNYGFSPAELNNFRVLSALSKLK 604 (695)
Q Consensus 526 ~~~~r~l~~~~~~~~~~~~~-~~~~~~l~~L~l~~~~~~~~~p~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~ 604 (695)
....+++.+..+........ ...+++|+.|.++.+......+..+..+++|++|++++|.+.. ++ ...+..+++|+
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~--~~-~~~~~~l~~L~ 103 (208)
T 2o6s_A 27 PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQS--LP-NGVFDKLTQLK 103 (208)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC--CC-TTTTTTCTTCC
T ss_pred CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCc--cC-HhHhcCccCCC
Confidence 45678888876644322221 1368999999999886665555578999999999999987742 11 12267899999
Q ss_pred EEEeccCCCCCcc--cccccccccEEeeccccCCcccccchhhhcccCCCccEEecccccccccCchhhcCCCCCceeec
Q 042541 605 KIRLEHVSLPNSL--ATVRMNHLQKVSLVMCNVGQVFRNSTFRISDAFPNLLEMDIDYCNDLIELPDGLCDIVSMEKLRI 682 (695)
Q Consensus 605 ~L~L~~~~l~~lp--~i~~l~~L~~L~l~~~~i~~~~~~~~~~l~~~l~~L~~L~l~~c~~l~~lP~~i~~L~~L~~L~l 682 (695)
+|++++|.+..+| .++++++|++|++++|.++.+++..+. .+++|+.|++++|.. .+.+++|++|++
T Consensus 104 ~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~----~l~~L~~L~l~~N~~-------~~~~~~l~~L~~ 172 (208)
T 2o6s_A 104 ELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFD----RLTSLQYIWLHDNPW-------DCTCPGIRYLSE 172 (208)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTT----TCTTCCEEECCSCCB-------CCCTTTTHHHHH
T ss_pred EEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhc----cCCCccEEEecCCCe-------ecCCCCHHHHHH
Confidence 9999999999888 578999999999999999999887765 899999999999743 345668889999
Q ss_pred ccccCCCCCCCCC
Q 042541 683 TNCHRLSALPEGI 695 (695)
Q Consensus 683 ~~~~~l~~lP~~i 695 (695)
+.|...+.+|.++
T Consensus 173 ~~n~~~g~ip~~~ 185 (208)
T 2o6s_A 173 WINKHSGVVRNSA 185 (208)
T ss_dssp HHHHCTTTBBCTT
T ss_pred HHHhCCceeeccC
Confidence 9888777888653
No 41
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.31 E-value=1.2e-11 Score=121.02 Aligned_cols=121 Identities=18% Similarity=0.226 Sum_probs=102.4
Q ss_pred cccCChhhcCCCCCcEEEEcccCCCCcccCcccccccCCCCcEEEeccCCCCCcc--cccccccccEEeeccccCCcccc
Q 042541 563 KYVLPDFLQKMDELKVLIVTNYGFSPAELNNFRVLSALSKLKKIRLEHVSLPNSL--ATVRMNHLQKVSLVMCNVGQVFR 640 (695)
Q Consensus 563 ~~~~p~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~lp--~i~~l~~L~~L~l~~~~i~~~~~ 640 (695)
...+|..+ .++|++|++++|.+.... ...+..+++|++|+|++|.+..+| .++.+++|++|+|++|.++.+++
T Consensus 31 l~~ip~~~--~~~L~~L~Ls~n~i~~~~---~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~ 105 (229)
T 3e6j_A 31 HASVPAGI--PTNAQILYLHDNQITKLE---PGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPS 105 (229)
T ss_dssp CSSCCSCC--CTTCSEEECCSSCCCCCC---TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred cCccCCCC--CCCCCEEEcCCCccCccC---HHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccCh
Confidence 34566544 388999999999874321 233788999999999999999888 57899999999999999999998
Q ss_pred cchhhhcccCCCccEEecccccccccCchhhcCCCCCceeecccccCCCCCCCC
Q 042541 641 NSTFRISDAFPNLLEMDIDYCNDLIELPDGLCDIVSMEKLRITNCHRLSALPEG 694 (695)
Q Consensus 641 ~~~~~l~~~l~~L~~L~l~~c~~l~~lP~~i~~L~~L~~L~l~~~~~l~~lP~~ 694 (695)
..+. .+++|++|+|++| .+..+|.++..+++|++|+|++|. +..+|.+
T Consensus 106 ~~~~----~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~L~~N~-l~~~~~~ 153 (229)
T 3e6j_A 106 AVFD----RLVHLKELFMCCN-KLTELPRGIERLTHLTHLALDQNQ-LKSIPHG 153 (229)
T ss_dssp TTTT----TCTTCCEEECCSS-CCCSCCTTGGGCTTCSEEECCSSC-CCCCCTT
T ss_pred hHhC----cchhhCeEeccCC-cccccCcccccCCCCCEEECCCCc-CCccCHH
Confidence 8776 8999999999996 578999999999999999999965 8888753
No 42
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.31 E-value=9.2e-12 Score=135.22 Aligned_cols=156 Identities=16% Similarity=0.247 Sum_probs=106.9
Q ss_pred CccceEEeeecCCcccCCCC-CCCCCceEEEEEEccCccccCChhhcCCCCCcEEEEcccCCCCcccCcccccccCCCCc
Q 042541 526 PNNASLLSISTDETFSSNWP-DMQGPEVKVVVLNIRTKKYVLPDFLQKMDELKVLIVTNYGFSPAELNNFRVLSALSKLK 604 (695)
Q Consensus 526 ~~~~r~l~~~~~~~~~~~~~-~~~~~~l~~L~l~~~~~~~~~p~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~ 604 (695)
+...++|.+..+........ ...+++|+.|.|+.+......|..|.++++|++|+|++|.+.. ++ ...+..+++|+
T Consensus 74 ~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~--~~-~~~~~~l~~L~ 150 (452)
T 3zyi_A 74 PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTV--IP-SGAFEYLSKLR 150 (452)
T ss_dssp CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSB--CC-TTTSSSCTTCC
T ss_pred CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCc--cC-hhhhcccCCCC
Confidence 45667777766543322222 2367778888887776666666777788888888888776531 11 12266777888
Q ss_pred EEEeccCCCCCcc--cccccccccEEeeccc-cCCcccccchhhhcccCCCccEEecccccccccCchhhcCCCCCceee
Q 042541 605 KIRLEHVSLPNSL--ATVRMNHLQKVSLVMC-NVGQVFRNSTFRISDAFPNLLEMDIDYCNDLIELPDGLCDIVSMEKLR 681 (695)
Q Consensus 605 ~L~L~~~~l~~lp--~i~~l~~L~~L~l~~~-~i~~~~~~~~~~l~~~l~~L~~L~l~~c~~l~~lP~~i~~L~~L~~L~ 681 (695)
+|+|++|.+..+| .+.++++|++|++++| .+..+++..+. .+++|++|++++| .+..+|. +..+++|+.|+
T Consensus 151 ~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~----~l~~L~~L~L~~n-~l~~~~~-~~~l~~L~~L~ 224 (452)
T 3zyi_A 151 ELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFE----GLFNLKYLNLGMC-NIKDMPN-LTPLVGLEELE 224 (452)
T ss_dssp EEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTT----TCTTCCEEECTTS-CCSSCCC-CTTCTTCCEEE
T ss_pred EEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhcc----CCCCCCEEECCCC-ccccccc-ccccccccEEE
Confidence 8888888887776 6777888888888874 56666666555 7888888888875 4667764 77888888888
Q ss_pred cccccCCCCC
Q 042541 682 ITNCHRLSAL 691 (695)
Q Consensus 682 l~~~~~l~~l 691 (695)
|++|. +..+
T Consensus 225 Ls~N~-l~~~ 233 (452)
T 3zyi_A 225 MSGNH-FPEI 233 (452)
T ss_dssp CTTSC-CSEE
T ss_pred CcCCc-Cccc
Confidence 88865 4444
No 43
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.31 E-value=1.2e-11 Score=121.86 Aligned_cols=161 Identities=8% Similarity=0.070 Sum_probs=123.8
Q ss_pred CccceEEeeecCCcccCCC-CCCCCCceEEEEEEccC-ccccCChhhcCCCCCcEEEEcc-cCCCCcccCcccccccCCC
Q 042541 526 PNNASLLSISTDETFSSNW-PDMQGPEVKVVVLNIRT-KKYVLPDFLQKMDELKVLIVTN-YGFSPAELNNFRVLSALSK 602 (695)
Q Consensus 526 ~~~~r~l~~~~~~~~~~~~-~~~~~~~l~~L~l~~~~-~~~~~p~~~~~l~~Lr~L~l~~-~~~~~~~~~~~~~l~~l~~ 602 (695)
+...+++.+..+....... ....+++|+.|.++.+. .....+..|.++++|++|++++ |.+.. ++ ...+..+++
T Consensus 30 ~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~--i~-~~~f~~l~~ 106 (239)
T 2xwt_C 30 PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTY--ID-PDALKELPL 106 (239)
T ss_dssp CTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCE--EC-TTSEECCTT
T ss_pred CCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeE--cC-HHHhCCCCC
Confidence 4467888887665432222 12368999999999886 4444445789999999999998 76632 11 123778999
Q ss_pred CcEEEeccCCCCCccccccccccc---EEeeccc-cCCcccccchhhhcccCCCcc-EEecccccccccCchhhcCCCCC
Q 042541 603 LKKIRLEHVSLPNSLATVRMNHLQ---KVSLVMC-NVGQVFRNSTFRISDAFPNLL-EMDIDYCNDLIELPDGLCDIVSM 677 (695)
Q Consensus 603 L~~L~L~~~~l~~lp~i~~l~~L~---~L~l~~~-~i~~~~~~~~~~l~~~l~~L~-~L~l~~c~~l~~lP~~i~~L~~L 677 (695)
|++|++++|.+..+|.++.+++|+ +|++++| .++.+++..+. .+++|+ .|++++| .+..+|......++|
T Consensus 107 L~~L~l~~n~l~~lp~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~----~l~~L~~~L~l~~n-~l~~i~~~~~~~~~L 181 (239)
T 2xwt_C 107 LKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQ----GLCNETLTLKLYNN-GFTSVQGYAFNGTKL 181 (239)
T ss_dssp CCEEEEEEECCCSCCCCTTCCBCCSEEEEEEESCTTCCEECTTTTT----TTBSSEEEEECCSC-CCCEECTTTTTTCEE
T ss_pred CCEEeCCCCCCccccccccccccccccEEECCCCcchhhcCccccc----chhcceeEEEcCCC-CCcccCHhhcCCCCC
Confidence 999999999999888777777777 9999999 89999888776 899999 9999986 567899876666899
Q ss_pred ceeecccccCCCCCCCC
Q 042541 678 EKLRITNCHRLSALPEG 694 (695)
Q Consensus 678 ~~L~l~~~~~l~~lP~~ 694 (695)
+.|++++|..++.+|..
T Consensus 182 ~~L~L~~n~~l~~i~~~ 198 (239)
T 2xwt_C 182 DAVYLNKNKYLTVIDKD 198 (239)
T ss_dssp EEEECTTCTTCCEECTT
T ss_pred CEEEcCCCCCcccCCHH
Confidence 99999997557777653
No 44
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.30 E-value=1.3e-11 Score=124.60 Aligned_cols=157 Identities=15% Similarity=0.201 Sum_probs=91.3
Q ss_pred ccceEEeeecCCcccCCC-CCCCCCceEEEEEEccCccccCChhhcCCCCCcEEEEcccCCCCcccCcccccccCCCCcE
Q 042541 527 NNASLLSISTDETFSSNW-PDMQGPEVKVVVLNIRTKKYVLPDFLQKMDELKVLIVTNYGFSPAELNNFRVLSALSKLKK 605 (695)
Q Consensus 527 ~~~r~l~~~~~~~~~~~~-~~~~~~~l~~L~l~~~~~~~~~p~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~ 605 (695)
...+++.+..+....... ....+++|+.|.++.+......|..+.++++|++|++.+|.+.. +.. ..++.+++|++
T Consensus 52 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~-~~~~~l~~L~~ 128 (276)
T 2z62_A 52 PELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLAS--LEN-FPIGHLKTLKE 128 (276)
T ss_dssp TTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCC--STT-CCCTTCTTCCE
T ss_pred cCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccc--cCc-hhcccCCCCCE
Confidence 345566655443221111 11245667777776665555555566677777777777665432 111 12566777777
Q ss_pred EEeccCCCCC--cc-cccccccccEEeeccccCCcccccchhhhcc-----------------------cCCCccEEecc
Q 042541 606 IRLEHVSLPN--SL-ATVRMNHLQKVSLVMCNVGQVFRNSTFRISD-----------------------AFPNLLEMDID 659 (695)
Q Consensus 606 L~L~~~~l~~--lp-~i~~l~~L~~L~l~~~~i~~~~~~~~~~l~~-----------------------~l~~L~~L~l~ 659 (695)
|++++|.+.. +| .++++++|++|++++|.++.+++..+..++. ...+|+.|+++
T Consensus 129 L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~ 208 (276)
T 2z62_A 129 LNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALD 208 (276)
T ss_dssp EECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECC
T ss_pred EECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccCCCcccEEECC
Confidence 7777777764 56 7777777777777777777666544432220 22356666666
Q ss_pred cccccccCchh-hcCCCCCceeecccccC
Q 042541 660 YCNDLIELPDG-LCDIVSMEKLRITNCHR 687 (695)
Q Consensus 660 ~c~~l~~lP~~-i~~L~~L~~L~l~~~~~ 687 (695)
+|. +..+|.. +.++++|+.|++++|+.
T Consensus 209 ~n~-l~~~~~~~~~~l~~L~~L~l~~N~~ 236 (276)
T 2z62_A 209 TNQ-LKSVPDGIFDRLTSLQKIWLHTNPW 236 (276)
T ss_dssp SSC-CSCCCTTTTTTCCSCCEEECCSSCB
T ss_pred CCc-eeecCHhHhcccccccEEEccCCcc
Confidence 643 5555554 46677777777776553
No 45
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.30 E-value=1.2e-11 Score=129.96 Aligned_cols=132 Identities=14% Similarity=0.184 Sum_probs=63.2
Q ss_pred eEEEEEEccCccccCChhhc-CCCCCcEEEEcccCCCCcccCcccccccCCCCcEEEeccCCCCCcc--cccccccccEE
Q 042541 552 VKVVVLNIRTKKYVLPDFLQ-KMDELKVLIVTNYGFSPAELNNFRVLSALSKLKKIRLEHVSLPNSL--ATVRMNHLQKV 628 (695)
Q Consensus 552 l~~L~l~~~~~~~~~p~~~~-~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~lp--~i~~l~~L~~L 628 (695)
++.|.|+.+......+..+. ++++|++|+|++|.+... . ...+..+++|++|+|++|.++.+| .+.++++|++|
T Consensus 41 l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i--~-~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 117 (361)
T 2xot_A 41 TALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFI--S-SEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVL 117 (361)
T ss_dssp CSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEE--C-TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEE
T ss_pred CCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCcc--C-hhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEE
Confidence 44555554444333333444 555555555555544211 0 012445555555555555555444 34555555555
Q ss_pred eeccccCCcccccchhhhcccCCCccEEecccccccccCchhh----cCCCCCceeecccccCCCCCC
Q 042541 629 SLVMCNVGQVFRNSTFRISDAFPNLLEMDIDYCNDLIELPDGL----CDIVSMEKLRITNCHRLSALP 692 (695)
Q Consensus 629 ~l~~~~i~~~~~~~~~~l~~~l~~L~~L~l~~c~~l~~lP~~i----~~L~~L~~L~l~~~~~l~~lP 692 (695)
+|++|.++.+++..+. .+++|+.|+|++| .+..+|..+ ..+++|++|+|++|. +..+|
T Consensus 118 ~L~~N~i~~~~~~~~~----~l~~L~~L~L~~N-~l~~l~~~~~~~~~~l~~L~~L~L~~N~-l~~l~ 179 (361)
T 2xot_A 118 LLYNNHIVVVDRNAFE----DMAQLQKLYLSQN-QISRFPVELIKDGNKLPKLMLLDLSSNK-LKKLP 179 (361)
T ss_dssp ECCSSCCCEECTTTTT----TCTTCCEEECCSS-CCCSCCGGGTC----CTTCCEEECCSSC-CCCCC
T ss_pred ECCCCcccEECHHHhC----CcccCCEEECCCC-cCCeeCHHHhcCcccCCcCCEEECCCCC-CCccC
Confidence 5555555555444443 4555555555553 344455443 345555555555533 44444
No 46
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.30 E-value=1.2e-11 Score=133.69 Aligned_cols=158 Identities=18% Similarity=0.269 Sum_probs=117.0
Q ss_pred CCccceEEeeecCCcccCCCC-CCCCCceEEEEEEccCccccCChhhcCCCCCcEEEEcccCCCCcccCcccccccCCCC
Q 042541 525 HPNNASLLSISTDETFSSNWP-DMQGPEVKVVVLNIRTKKYVLPDFLQKMDELKVLIVTNYGFSPAELNNFRVLSALSKL 603 (695)
Q Consensus 525 ~~~~~r~l~~~~~~~~~~~~~-~~~~~~l~~L~l~~~~~~~~~p~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L 603 (695)
.+...++|.+..+........ ...+++|+.|.|+.+......+..|.++++|++|+|++|.+.. ++ ...+..+++|
T Consensus 62 ~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~--~~-~~~~~~l~~L 138 (440)
T 3zyj_A 62 ISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTT--IP-NGAFVYLSKL 138 (440)
T ss_dssp CCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSS--CC-TTTSCSCSSC
T ss_pred CCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCe--eC-HhHhhccccC
Confidence 345677787776544332222 2367888888888887666666788888999999998886632 11 1236788889
Q ss_pred cEEEeccCCCCCcc--cccccccccEEeeccc-cCCcccccchhhhcccCCCccEEecccccccccCchhhcCCCCCcee
Q 042541 604 KKIRLEHVSLPNSL--ATVRMNHLQKVSLVMC-NVGQVFRNSTFRISDAFPNLLEMDIDYCNDLIELPDGLCDIVSMEKL 680 (695)
Q Consensus 604 ~~L~L~~~~l~~lp--~i~~l~~L~~L~l~~~-~i~~~~~~~~~~l~~~l~~L~~L~l~~c~~l~~lP~~i~~L~~L~~L 680 (695)
++|+|++|.+..+| .+.++++|++|+|++| .+..+++..+. .+++|++|++++| .+..+|. +..+++|+.|
T Consensus 139 ~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~----~l~~L~~L~L~~n-~l~~~~~-~~~l~~L~~L 212 (440)
T 3zyj_A 139 KELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFE----GLSNLRYLNLAMC-NLREIPN-LTPLIKLDEL 212 (440)
T ss_dssp CEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTT----TCSSCCEEECTTS-CCSSCCC-CTTCSSCCEE
T ss_pred ceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhh----cccccCeecCCCC-cCccccc-cCCCcccCEE
Confidence 99999999888777 7888899999999885 56777776665 7889999999986 5778884 8889999999
Q ss_pred ecccccCCCCCC
Q 042541 681 RITNCHRLSALP 692 (695)
Q Consensus 681 ~l~~~~~l~~lP 692 (695)
+|++|. +..++
T Consensus 213 ~Ls~N~-l~~~~ 223 (440)
T 3zyj_A 213 DLSGNH-LSAIR 223 (440)
T ss_dssp ECTTSC-CCEEC
T ss_pred ECCCCc-cCccC
Confidence 999875 55553
No 47
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.29 E-value=1.9e-11 Score=125.47 Aligned_cols=150 Identities=16% Similarity=0.193 Sum_probs=112.1
Q ss_pred CccceEEeeecCCcccCCCCCCCCCceEEEEEEccCccccCChhhcCCCCCcEEEEcccCCCCcccCcccccccCCCCcE
Q 042541 526 PNNASLLSISTDETFSSNWPDMQGPEVKVVVLNIRTKKYVLPDFLQKMDELKVLIVTNYGFSPAELNNFRVLSALSKLKK 605 (695)
Q Consensus 526 ~~~~r~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~p~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~ 605 (695)
....+.|.+..+.... ......+++|+.|.++.+.... +| .+..+++|++|++++|.+.. .+.+..+++|++
T Consensus 62 l~~L~~L~L~~n~i~~-~~~~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~l~~n~l~~-----~~~l~~l~~L~~ 133 (308)
T 1h6u_A 62 LNNLIGLELKDNQITD-LAPLKNLTKITELELSGNPLKN-VS-AIAGLQSIKTLDLTSTQITD-----VTPLAGLSNLQV 133 (308)
T ss_dssp CTTCCEEECCSSCCCC-CGGGTTCCSCCEEECCSCCCSC-CG-GGTTCTTCCEEECTTSCCCC-----CGGGTTCTTCCE
T ss_pred cCCCCEEEccCCcCCC-ChhHccCCCCCEEEccCCcCCC-ch-hhcCCCCCCEEECCCCCCCC-----chhhcCCCCCCE
Confidence 3567777776654322 1223467888888888775433 33 57888889999998887632 233788889999
Q ss_pred EEeccCCCCCcccccccccccEEeeccccCCcccccchhhhcccCCCccEEecccccccccCchhhcCCCCCceeecccc
Q 042541 606 IRLEHVSLPNSLATVRMNHLQKVSLVMCNVGQVFRNSTFRISDAFPNLLEMDIDYCNDLIELPDGLCDIVSMEKLRITNC 685 (695)
Q Consensus 606 L~L~~~~l~~lp~i~~l~~L~~L~l~~~~i~~~~~~~~~~l~~~l~~L~~L~l~~c~~l~~lP~~i~~L~~L~~L~l~~~ 685 (695)
|++++|.+..+|.++.+++|++|++++|.++.+++ +. .+++|+.|++++| .+..+|. +..+++|++|++++|
T Consensus 134 L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~--l~----~l~~L~~L~l~~n-~l~~~~~-l~~l~~L~~L~L~~N 205 (308)
T 1h6u_A 134 LYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTP--LA----NLSKLTTLKADDN-KISDISP-LASLPNLIEVHLKNN 205 (308)
T ss_dssp EECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGG--GT----TCTTCCEEECCSS-CCCCCGG-GGGCTTCCEEECTTS
T ss_pred EECCCCccCcCccccCCCCccEEEccCCcCCCChh--hc----CCCCCCEEECCCC-ccCcChh-hcCCCCCCEEEccCC
Confidence 99999988877777788999999999998888766 33 7899999999986 5677775 888999999999987
Q ss_pred cCCCCCC
Q 042541 686 HRLSALP 692 (695)
Q Consensus 686 ~~l~~lP 692 (695)
. +..+|
T Consensus 206 ~-l~~~~ 211 (308)
T 1h6u_A 206 Q-ISDVS 211 (308)
T ss_dssp C-CCBCG
T ss_pred c-cCccc
Confidence 6 55554
No 48
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.29 E-value=2.2e-11 Score=123.82 Aligned_cols=150 Identities=17% Similarity=0.209 Sum_probs=114.2
Q ss_pred CccceEEeeecCCcccCCCCCCCCCceEEEEEEccCccccCChhhcCCCCCcEEEEcccCCCCcccCcccccccCCCCcE
Q 042541 526 PNNASLLSISTDETFSSNWPDMQGPEVKVVVLNIRTKKYVLPDFLQKMDELKVLIVTNYGFSPAELNNFRVLSALSKLKK 605 (695)
Q Consensus 526 ~~~~r~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~p~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~ 605 (695)
....+.|.+..+.... ......+++|+.|.++.+.... +| .+..+++|++|++++|.+.. ++.+..+++|++
T Consensus 67 l~~L~~L~L~~n~l~~-~~~l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~L~~n~i~~-----~~~l~~l~~L~~ 138 (291)
T 1h6t_A 67 LPNVTKLFLNGNKLTD-IKPLANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSLEHNGISD-----INGLVHLPQLES 138 (291)
T ss_dssp CTTCCEEECCSSCCCC-CGGGTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEECTTSCCCC-----CGGGGGCTTCCE
T ss_pred CCCCCEEEccCCccCC-CcccccCCCCCEEECCCCcCCC-Ch-hhccCCCCCEEECCCCcCCC-----ChhhcCCCCCCE
Confidence 3567777776654322 1223467888999888775433 33 48888999999999887632 244788899999
Q ss_pred EEeccCCCCCcccccccccccEEeeccccCCcccccchhhhcccCCCccEEecccccccccCchhhcCCCCCceeecccc
Q 042541 606 IRLEHVSLPNSLATVRMNHLQKVSLVMCNVGQVFRNSTFRISDAFPNLLEMDIDYCNDLIELPDGLCDIVSMEKLRITNC 685 (695)
Q Consensus 606 L~L~~~~l~~lp~i~~l~~L~~L~l~~~~i~~~~~~~~~~l~~~l~~L~~L~l~~c~~l~~lP~~i~~L~~L~~L~l~~~ 685 (695)
|++++|.+..++.++.+++|++|++++|.++.+++ +. .+++|+.|++++| .+..+|. +..+++|+.|++++|
T Consensus 139 L~l~~n~l~~~~~l~~l~~L~~L~L~~N~l~~~~~--l~----~l~~L~~L~L~~N-~i~~l~~-l~~l~~L~~L~l~~n 210 (291)
T 1h6t_A 139 LYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP--LA----GLTKLQNLYLSKN-HISDLRA-LAGLKNLDVLELFSQ 210 (291)
T ss_dssp EECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG--GT----TCTTCCEEECCSS-CCCBCGG-GTTCTTCSEEEEEEE
T ss_pred EEccCCcCCcchhhccCCCCCEEEccCCccccchh--hc----CCCccCEEECCCC-cCCCChh-hccCCCCCEEECcCC
Confidence 99999998887878889999999999999988776 33 7899999999986 5777875 899999999999987
Q ss_pred cCCCCCC
Q 042541 686 HRLSALP 692 (695)
Q Consensus 686 ~~l~~lP 692 (695)
+ +...|
T Consensus 211 ~-i~~~~ 216 (291)
T 1h6t_A 211 E-CLNKP 216 (291)
T ss_dssp E-EECCC
T ss_pred c-ccCCc
Confidence 6 44443
No 49
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.28 E-value=1.9e-11 Score=137.53 Aligned_cols=159 Identities=14% Similarity=0.173 Sum_probs=108.8
Q ss_pred CccceEEeeecCCcccCCCCC--CCCCceEEEEEEccCccccCChhhcCCCCCcEEEEcccCCCCcccC-----------
Q 042541 526 PNNASLLSISTDETFSSNWPD--MQGPEVKVVVLNIRTKKYVLPDFLQKMDELKVLIVTNYGFSPAELN----------- 592 (695)
Q Consensus 526 ~~~~r~l~~~~~~~~~~~~~~--~~~~~l~~L~l~~~~~~~~~p~~~~~l~~Lr~L~l~~~~~~~~~~~----------- 592 (695)
....++|.+.++... ..+.. ..+++|+.|.++.+......|..|.++++|++|++++|.+....+.
T Consensus 122 l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~ 200 (597)
T 3oja_B 122 VPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVS 200 (597)
T ss_dssp CTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECC
T ss_pred CCCCCEEEeeCCCCC-CCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcc
Confidence 346677777655432 22222 3677888888888777666677788888888888887755321110
Q ss_pred ---------------------------------------------cccccccCCCCcEEEeccCCCCCc-c-cccccccc
Q 042541 593 ---------------------------------------------NFRVLSALSKLKKIRLEHVSLPNS-L-ATVRMNHL 625 (695)
Q Consensus 593 ---------------------------------------------~~~~l~~l~~L~~L~L~~~~l~~l-p-~i~~l~~L 625 (695)
.++.++.+++|++|+|++|.+..+ | .++.+++|
T Consensus 201 ~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 280 (597)
T 3oja_B 201 YNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRL 280 (597)
T ss_dssp SSCCSEEECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSC
T ss_pred cCccccccCCchhheeeccCCcccccccccCCCCCEEECCCCCCCCChhhccCCCCCEEECCCCccCCCCHHHhcCccCC
Confidence 112355667777777777777744 4 77778888
Q ss_pred cEEeeccccCCcccccchhhhcccCCCccEEecccccccccCchhhcCCCCCceeecccccCCCCCC
Q 042541 626 QKVSLVMCNVGQVFRNSTFRISDAFPNLLEMDIDYCNDLIELPDGLCDIVSMEKLRITNCHRLSALP 692 (695)
Q Consensus 626 ~~L~l~~~~i~~~~~~~~~~l~~~l~~L~~L~l~~c~~l~~lP~~i~~L~~L~~L~l~~~~~l~~lP 692 (695)
++|+|++|.++.+|.... .+++|+.|+|++| .+..+|..++.+++|++|+|++|+ +..+|
T Consensus 281 ~~L~Ls~N~l~~l~~~~~-----~l~~L~~L~Ls~N-~l~~i~~~~~~l~~L~~L~L~~N~-l~~~~ 340 (597)
T 3oja_B 281 ERLYISNNRLVALNLYGQ-----PIPTLKVLDLSHN-HLLHVERNQPQFDRLENLYLDHNS-IVTLK 340 (597)
T ss_dssp CEEECTTSCCCEEECSSS-----CCTTCCEEECCSS-CCCCCGGGHHHHTTCSEEECCSSC-CCCCC
T ss_pred CEEECCCCCCCCCCcccc-----cCCCCcEEECCCC-CCCccCcccccCCCCCEEECCCCC-CCCcC
Confidence 888888887777665544 6788888888886 466788888888888888888866 55554
No 50
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.28 E-value=5.8e-12 Score=142.96 Aligned_cols=135 Identities=16% Similarity=0.170 Sum_probs=104.4
Q ss_pred CceEEEEEEccCccccCChhhcCCCCCcEEEEcccCCCCcccCcccccccCCCCcEEEeccCCCCCcc--cccccccccE
Q 042541 550 PEVKVVVLNIRTKKYVLPDFLQKMDELKVLIVTNYGFSPAELNNFRVLSALSKLKKIRLEHVSLPNSL--ATVRMNHLQK 627 (695)
Q Consensus 550 ~~l~~L~l~~~~~~~~~p~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~lp--~i~~l~~L~~ 627 (695)
+.++.|+|+.|......|..|.++++|++|+|++|.+.. ++ ...+.+|++|++|+|++|.++.+| .+++|++|++
T Consensus 52 ~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~--i~-~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~ 128 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT--IE-DGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQK 128 (635)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCE--EC-TTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCE
T ss_pred cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCC--cC-hhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCE
Confidence 468888888876665556688889999999999887631 11 123778889999999999988887 6788999999
Q ss_pred EeeccccCCcccccchhhhcccCCCccEEecccccccc-cCchhhcCCCCCceeecccccCCCCCC
Q 042541 628 VSLVMCNVGQVFRNSTFRISDAFPNLLEMDIDYCNDLI-ELPDGLCDIVSMEKLRITNCHRLSALP 692 (695)
Q Consensus 628 L~l~~~~i~~~~~~~~~~l~~~l~~L~~L~l~~c~~l~-~lP~~i~~L~~L~~L~l~~~~~l~~lP 692 (695)
|+|++|.++.+++..+. .|++|++|++++|.... .+|..++.+++|++|++++|. +..++
T Consensus 129 L~Ls~N~l~~l~~~~~~----~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~ 189 (635)
T 4g8a_A 129 LVAVETNLASLENFPIG----HLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK-IQSIY 189 (635)
T ss_dssp EECTTSCCCCSTTCCCT----TCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSC-CCEEC
T ss_pred EECCCCcCCCCChhhhh----cCcccCeeccccCccccCCCchhhccchhhhhhcccCcc-ccccc
Confidence 99999998888887666 88899999998864322 467778889999999998865 54443
No 51
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.28 E-value=1e-11 Score=127.44 Aligned_cols=154 Identities=13% Similarity=0.097 Sum_probs=112.5
Q ss_pred ccceEEeeecCCcccCCC--CCCCCCceEEEEEEccCccccCChhhcCCCCCcEEEEcccCCCCcccCcccccccCCCCc
Q 042541 527 NNASLLSISTDETFSSNW--PDMQGPEVKVVVLNIRTKKYVLPDFLQKMDELKVLIVTNYGFSPAELNNFRVLSALSKLK 604 (695)
Q Consensus 527 ~~~r~l~~~~~~~~~~~~--~~~~~~~l~~L~l~~~~~~~~~p~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~ 604 (695)
...+++.+..+....... ....+++|+.|.++.+......|..+..+++|++|++++|.+..... +..+..+++|+
T Consensus 101 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~~~~l~~L~ 178 (306)
T 2z66_A 101 EQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFL--PDIFTELRNLT 178 (306)
T ss_dssp TTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEE--CSCCTTCTTCC
T ss_pred CCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccc--hhHHhhCcCCC
Confidence 456666665543222111 22367788888888777666777778888888888888876532111 22367888899
Q ss_pred EEEeccCCCCCc-c-cccccccccEEeeccccCCcccccchhhhcccCCCccEEecccccccccCchhhcCCC-CCceee
Q 042541 605 KIRLEHVSLPNS-L-ATVRMNHLQKVSLVMCNVGQVFRNSTFRISDAFPNLLEMDIDYCNDLIELPDGLCDIV-SMEKLR 681 (695)
Q Consensus 605 ~L~L~~~~l~~l-p-~i~~l~~L~~L~l~~~~i~~~~~~~~~~l~~~l~~L~~L~l~~c~~l~~lP~~i~~L~-~L~~L~ 681 (695)
+|++++|.+..+ | .++++++|++|++++|.++.+++..+. .+++|+.|++++|......|..+..++ +|++|+
T Consensus 179 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~----~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~ 254 (306)
T 2z66_A 179 FLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYK----CLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLN 254 (306)
T ss_dssp EEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGT----TCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEE
T ss_pred EEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhcc----CcccCCEeECCCCCCcccCHHHHHhhhccCCEEE
Confidence 999999888866 4 788888999999999988888776555 788899999998866666777788884 899999
Q ss_pred ccccc
Q 042541 682 ITNCH 686 (695)
Q Consensus 682 l~~~~ 686 (695)
+++|+
T Consensus 255 L~~N~ 259 (306)
T 2z66_A 255 LTQND 259 (306)
T ss_dssp CTTCC
T ss_pred ccCCC
Confidence 98876
No 52
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.28 E-value=1.3e-11 Score=124.51 Aligned_cols=135 Identities=16% Similarity=0.153 Sum_probs=100.0
Q ss_pred CccceEEeeecCCcccCCC-CCCCCCceEEEEEEccCccccCChhhcCCCCCcEEEEcccCCCCcccCcccccccCCCCc
Q 042541 526 PNNASLLSISTDETFSSNW-PDMQGPEVKVVVLNIRTKKYVLPDFLQKMDELKVLIVTNYGFSPAELNNFRVLSALSKLK 604 (695)
Q Consensus 526 ~~~~r~l~~~~~~~~~~~~-~~~~~~~l~~L~l~~~~~~~~~p~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~ 604 (695)
+...+++.+..+....... ....+++|+.|.++.+......+..+.++++|++|++++|.+.... ...+..+++|+
T Consensus 27 ~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~---~~~~~~l~~L~ 103 (276)
T 2z62_A 27 PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA---LGAFSGLSSLQ 103 (276)
T ss_dssp CTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEEC---TTTTTTCTTCC
T ss_pred CCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccC---hhhhcCCcccc
Confidence 4567888887654332222 2236789999999888666666668899999999999998764211 12377889999
Q ss_pred EEEeccCCCCCcc--cccccccccEEeeccccCCccc-ccchhhhcccCCCccEEecccccccccCc
Q 042541 605 KIRLEHVSLPNSL--ATVRMNHLQKVSLVMCNVGQVF-RNSTFRISDAFPNLLEMDIDYCNDLIELP 668 (695)
Q Consensus 605 ~L~L~~~~l~~lp--~i~~l~~L~~L~l~~~~i~~~~-~~~~~~l~~~l~~L~~L~l~~c~~l~~lP 668 (695)
+|++++|.+..++ .++++++|++|++++|.++... |..+. .+++|++|++++|. +..+|
T Consensus 104 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~----~l~~L~~L~Ls~N~-l~~~~ 165 (276)
T 2z62_A 104 KLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFS----NLTNLEHLDLSSNK-IQSIY 165 (276)
T ss_dssp EEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGG----GCTTCCEEECCSSC-CCEEC
T ss_pred EEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhc----cCCCCCEEECCCCC-CCcCC
Confidence 9999999998776 7889999999999999988743 44444 78999999999864 44443
No 53
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.27 E-value=7.3e-12 Score=128.45 Aligned_cols=137 Identities=13% Similarity=0.137 Sum_probs=102.5
Q ss_pred CCCceEEEEEEccCccccCC-hhhcCCCCCcEEEEcccCCCCcccCcccccccCCCCcEEEeccCCCCC--cc-cccccc
Q 042541 548 QGPEVKVVVLNIRTKKYVLP-DFLQKMDELKVLIVTNYGFSPAELNNFRVLSALSKLKKIRLEHVSLPN--SL-ATVRMN 623 (695)
Q Consensus 548 ~~~~l~~L~l~~~~~~~~~p-~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~--lp-~i~~l~ 623 (695)
.+++|+.|.++.+......+ ..+..+++|++|++++|.+... ....+..+++|++|++++|.+.. +| .++.++
T Consensus 99 ~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~ 175 (306)
T 2z66_A 99 GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVA---FNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELR 175 (306)
T ss_dssp TCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEEC---STTTTTTCTTCCEEECTTCEEGGGEECSCCTTCT
T ss_pred CCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCcc---chhhcccCcCCCEEECCCCccccccchhHHhhCc
Confidence 56777777777664433333 4677888888888887765311 11236778899999999998874 67 888999
Q ss_pred cccEEeeccccCCcccccchhhhcccCCCccEEecccccccccCch-hhcCCCCCceeecccccCCCCCC
Q 042541 624 HLQKVSLVMCNVGQVFRNSTFRISDAFPNLLEMDIDYCNDLIELPD-GLCDIVSMEKLRITNCHRLSALP 692 (695)
Q Consensus 624 ~L~~L~l~~~~i~~~~~~~~~~l~~~l~~L~~L~l~~c~~l~~lP~-~i~~L~~L~~L~l~~~~~l~~lP 692 (695)
+|++|++++|.++.+++..+. .+++|++|++++|. +..+|. .+..+++|++|++++|...+..|
T Consensus 176 ~L~~L~Ls~n~l~~~~~~~~~----~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 240 (306)
T 2z66_A 176 NLTFLDLSQCQLEQLSPTAFN----SLSSLQVLNMSHNN-FFSLDTFPYKCLNSLQVLDYSLNHIMTSKK 240 (306)
T ss_dssp TCCEEECTTSCCCEECTTTTT----TCTTCCEEECTTSC-CSBCCSGGGTTCTTCCEEECTTSCCCBCSS
T ss_pred CCCEEECCCCCcCCcCHHHhc----CCCCCCEEECCCCc-cCccChhhccCcccCCEeECCCCCCcccCH
Confidence 999999999999988777665 78999999999875 555554 68899999999999987444444
No 54
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.27 E-value=2e-11 Score=137.89 Aligned_cols=130 Identities=11% Similarity=0.112 Sum_probs=61.9
Q ss_pred CceEEEEEEccCccccCChhhcCCCCCcEEEEcccCCCCcccCcccccccCCCCcEEEeccCCCCCc-c-cccccccccE
Q 042541 550 PEVKVVVLNIRTKKYVLPDFLQKMDELKVLIVTNYGFSPAELNNFRVLSALSKLKKIRLEHVSLPNS-L-ATVRMNHLQK 627 (695)
Q Consensus 550 ~~l~~L~l~~~~~~~~~p~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~l-p-~i~~l~~L~~ 627 (695)
++++.|.++.+......|..|.++++|++|++++|.+.. + .+..++.+++|++|+|++|.+..+ | .++++++|++
T Consensus 32 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~--i-~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 108 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIET--I-EDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLEN 108 (606)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCE--E-CTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCE
T ss_pred CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccc--c-CHHHhhchhhcCEeECCCCcccccChhhcCCcccCCE
Confidence 344455554444433334445555555555555544321 0 011244555555555555555543 3 5555555555
Q ss_pred EeeccccCCcccccchhhhcccCCCccEEecccccccc-cCchhhcCCCCCceeeccccc
Q 042541 628 VSLVMCNVGQVFRNSTFRISDAFPNLLEMDIDYCNDLI-ELPDGLCDIVSMEKLRITNCH 686 (695)
Q Consensus 628 L~l~~~~i~~~~~~~~~~l~~~l~~L~~L~l~~c~~l~-~lP~~i~~L~~L~~L~l~~~~ 686 (695)
|++++|.++.+++..+. .+++|++|++++|.... .+|..++++++|++|++++|.
T Consensus 109 L~L~~n~l~~~~~~~~~----~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~ 164 (606)
T 3vq2_A 109 LVAVETKLASLESFPIG----QLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNY 164 (606)
T ss_dssp EECTTSCCCCSSSSCCT----TCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSC
T ss_pred EEccCCccccccccccC----CCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCc
Confidence 55555555554443333 45555555555543222 345555555555555555543
No 55
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.27 E-value=2.4e-11 Score=123.53 Aligned_cols=148 Identities=17% Similarity=0.237 Sum_probs=116.1
Q ss_pred cceEEeeecCCcccCCCCCCCCCceEEEEEEccCccccCChhhcCCCCCcEEEEcccCCCCcccCcccccccCCCCcEEE
Q 042541 528 NASLLSISTDETFSSNWPDMQGPEVKVVVLNIRTKKYVLPDFLQKMDELKVLIVTNYGFSPAELNNFRVLSALSKLKKIR 607 (695)
Q Consensus 528 ~~r~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~p~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~ 607 (695)
..+.+.+...... .......+++|+.|.++.+..... +. +.++++|++|++++|.+. .++.+..+++|++|+
T Consensus 47 ~L~~L~l~~~~i~-~~~~~~~l~~L~~L~L~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~-----~~~~l~~l~~L~~L~ 118 (291)
T 1h6t_A 47 SIDQIIANNSDIK-SVQGIQYLPNVTKLFLNGNKLTDI-KP-LANLKNLGWLFLDENKVK-----DLSSLKDLKKLKSLS 118 (291)
T ss_dssp TCCEEECTTSCCC-CCTTGGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCC-----CGGGGTTCTTCCEEE
T ss_pred cccEEEccCCCcc-cChhHhcCCCCCEEEccCCccCCC-cc-cccCCCCCEEECCCCcCC-----CChhhccCCCCCEEE
Confidence 4555655543321 111223678999999988865543 33 899999999999998763 234488999999999
Q ss_pred eccCCCCCcccccccccccEEeeccccCCcccccchhhhcccCCCccEEecccccccccCchhhcCCCCCceeecccccC
Q 042541 608 LEHVSLPNSLATVRMNHLQKVSLVMCNVGQVFRNSTFRISDAFPNLLEMDIDYCNDLIELPDGLCDIVSMEKLRITNCHR 687 (695)
Q Consensus 608 L~~~~l~~lp~i~~l~~L~~L~l~~~~i~~~~~~~~~~l~~~l~~L~~L~l~~c~~l~~lP~~i~~L~~L~~L~l~~~~~ 687 (695)
+++|.+..++.++.+++|++|++++|.++.+ +... .+++|++|++++| .+..+|. +..+++|++|++++|.
T Consensus 119 L~~n~i~~~~~l~~l~~L~~L~l~~n~l~~~-~~l~-----~l~~L~~L~L~~N-~l~~~~~-l~~l~~L~~L~L~~N~- 189 (291)
T 1h6t_A 119 LEHNGISDINGLVHLPQLESLYLGNNKITDI-TVLS-----RLTKLDTLSLEDN-QISDIVP-LAGLTKLQNLYLSKNH- 189 (291)
T ss_dssp CTTSCCCCCGGGGGCTTCCEEECCSSCCCCC-GGGG-----GCTTCSEEECCSS-CCCCCGG-GTTCTTCCEEECCSSC-
T ss_pred CCCCcCCCChhhcCCCCCCEEEccCCcCCcc-hhhc-----cCCCCCEEEccCC-ccccchh-hcCCCccCEEECCCCc-
Confidence 9999999888888999999999999999887 3333 8999999999997 5677776 9999999999999975
Q ss_pred CCCCC
Q 042541 688 LSALP 692 (695)
Q Consensus 688 l~~lP 692 (695)
++.+|
T Consensus 190 i~~l~ 194 (291)
T 1h6t_A 190 ISDLR 194 (291)
T ss_dssp CCBCG
T ss_pred CCCCh
Confidence 66665
No 56
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.27 E-value=1.1e-10 Score=115.13 Aligned_cols=192 Identities=17% Similarity=0.117 Sum_probs=115.7
Q ss_pred CCCCCCCcchHHHHHHHHHcCC-ceEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCCCCCHHHHHHHHHHhc
Q 042541 165 PVISPGLDVPLKELKMELFKDG-RQFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSKNPNVKAIVQKVLHHK 243 (695)
Q Consensus 165 ~~~~vGr~~~~~~l~~~L~~~~-~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~~~~~~~~~~~i~~~l 243 (695)
...++||+..++.+..++..+. .+.+.|+|++|+||||||+.+++. ....+.. . ...+... .. ...+....
T Consensus 22 ~~~~~g~~~~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~--~~~~~~~-~-~~~~~~~---~~-~~~~~~~~ 93 (250)
T 1njg_A 22 FADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKG--LNCETGI-T-ATPCGVC---DN-CREIEQGR 93 (250)
T ss_dssp GGGCCSCHHHHHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHH--HHCTTCS-C-SSCCSCS---HH-HHHHHTTC
T ss_pred HHHHhCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHH--hcCCCCC-C-CCCCccc---HH-HHHHhccC
Confidence 3468999999999999998554 468999999999999999999873 2221110 0 0000000 00 00111000
Q ss_pred CCCCCC-CCChHHHHHHHHHHHHhc-----CCCcEEEEEeCCCCCChH----HHhhhccCCCCCEEEEEcCCCCC-----
Q 042541 244 GYPVPE-FQTDEAAINDLERFFKQM-----RIEAILLVLDDVWPGSES----LLQKLGFQLPDYKILVTSRSEFP----- 308 (695)
Q Consensus 244 ~~~~~~-~~~~~~~~~~l~~~~~~l-----~~~~~LlVlDdv~~~~~~----~~~~l~~~~~gs~iivTtR~~~~----- 308 (695)
...... ..........+..+++.+ .+++.+||+||++..... ++..+.....+..+|+||+....
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~~~~l 173 (250)
T 1njg_A 94 FVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTI 173 (250)
T ss_dssp CSSEEEEETTCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGGSCHHH
T ss_pred CcceEEecCcccccHHHHHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChHhCCHHH
Confidence 000000 000001122233333332 457899999999776543 33333334457788888876521
Q ss_pred -CCCCeEecCCCChHHHHHHHHHhccCCCCCCCCCchHHHHHHHHhcCCchhHHHHHHHh
Q 042541 309 -QFGSVHYLKPLTYEAARTLFLHSANLQDGNSYIPDENIVSKILRACKGCPLALKVVGGS 367 (695)
Q Consensus 309 -~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~~~~ 367 (695)
.....+.+++++.++..+++...+..... .-..+....|++.|+|+|..+..+...
T Consensus 174 ~~r~~~i~l~~l~~~e~~~~l~~~~~~~~~---~~~~~~~~~l~~~~~G~~~~~~~~~~~ 230 (250)
T 1njg_A 174 LSRCLQFHLKALDVEQIRHQLEHILNEEHI---AHEPRALQLLARAAEGSLRDALSLTDQ 230 (250)
T ss_dssp HTTSEEEECCCCCHHHHHHHHHHHHHHTTC---CBCHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHhhhccCCCCCHHHHHHHHHHHHHhcCC---CCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 11247999999999999999987654322 123567889999999999988876543
No 57
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.27 E-value=3.9e-12 Score=145.75 Aligned_cols=118 Identities=11% Similarity=0.027 Sum_probs=93.4
Q ss_pred cCChhhcCCCCCcEEEEcccCCCCcccCcccccccCCCCcEEEeccCCCCCcc-cccccccccEEeeccccCCcccccch
Q 042541 565 VLPDFLQKMDELKVLIVTNYGFSPAELNNFRVLSALSKLKKIRLEHVSLPNSL-ATVRMNHLQKVSLVMCNVGQVFRNST 643 (695)
Q Consensus 565 ~~p~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~lp-~i~~l~~L~~L~l~~~~i~~~~~~~~ 643 (695)
..|..+..+++|++|+|++|.+. .++ +.+..+++|++|+|++|.++.+| .+++|++|++|+|++|.|+.+|..+.
T Consensus 215 ~~~~~~~~l~~L~~L~Ls~n~l~--~l~--~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~ 290 (727)
T 4b8c_D 215 MPKDSKYDDQLWHALDLSNLQIF--NIS--ANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELG 290 (727)
T ss_dssp -------CCCCCCEEECTTSCCS--CCC--GGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGG
T ss_pred cChhhhccCCCCcEEECCCCCCC--CCC--hhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhc
Confidence 45678889999999999998764 222 23668999999999999999999 99999999999999999998766655
Q ss_pred hhhcccCCCccEEecccccccccCchhhcCCCCCceeecccccCCCCCC
Q 042541 644 FRISDAFPNLLEMDIDYCNDLIELPDGLCDIVSMEKLRITNCHRLSALP 692 (695)
Q Consensus 644 ~~l~~~l~~L~~L~l~~c~~l~~lP~~i~~L~~L~~L~l~~~~~l~~lP 692 (695)
.|++|++|+|++| .+..+|.+|++|++|++|+|++|+..+.+|
T Consensus 291 -----~l~~L~~L~L~~N-~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p 333 (727)
T 4b8c_D 291 -----SCFQLKYFYFFDN-MVTTLPWEFGNLCNLQFLGVEGNPLEKQFL 333 (727)
T ss_dssp -----GGTTCSEEECCSS-CCCCCCSSTTSCTTCCCEECTTSCCCSHHH
T ss_pred -----CCCCCCEEECCCC-CCCccChhhhcCCCccEEeCCCCccCCCCh
Confidence 8999999999986 578999999999999999999987444433
No 58
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.26 E-value=5.6e-11 Score=123.25 Aligned_cols=88 Identities=22% Similarity=0.363 Sum_probs=71.3
Q ss_pred CCCcEEEeccCCCCCc-c-cccccccccEEeeccccCCcccccchhhhcccCCCccEEecccccccccCchhhcCCCCCc
Q 042541 601 SKLKKIRLEHVSLPNS-L-ATVRMNHLQKVSLVMCNVGQVFRNSTFRISDAFPNLLEMDIDYCNDLIELPDGLCDIVSME 678 (695)
Q Consensus 601 ~~L~~L~L~~~~l~~l-p-~i~~l~~L~~L~l~~~~i~~~~~~~~~~l~~~l~~L~~L~l~~c~~l~~lP~~i~~L~~L~ 678 (695)
++|++|++++|.+..+ | .++++++|++|++++|.++..++..+. .+++|+.|++++| .+..+|.++..+++|+
T Consensus 192 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~----~l~~L~~L~L~~N-~l~~lp~~l~~l~~L~ 266 (330)
T 1xku_A 192 PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLA----NTPHLRELHLNNN-KLVKVPGGLADHKYIQ 266 (330)
T ss_dssp TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGG----GSTTCCEEECCSS-CCSSCCTTTTTCSSCC
T ss_pred ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhcc----CCCCCCEEECCCC-cCccCChhhccCCCcC
Confidence 5677777777777755 4 788888899999999988888776665 7889999999986 5778999999999999
Q ss_pred eeecccccCCCCCCCC
Q 042541 679 KLRITNCHRLSALPEG 694 (695)
Q Consensus 679 ~L~l~~~~~l~~lP~~ 694 (695)
+|++++|+ ++.+|..
T Consensus 267 ~L~l~~N~-i~~~~~~ 281 (330)
T 1xku_A 267 VVYLHNNN-ISAIGSN 281 (330)
T ss_dssp EEECCSSC-CCCCCTT
T ss_pred EEECCCCc-CCccChh
Confidence 99999866 7777653
No 59
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.26 E-value=3.6e-11 Score=127.85 Aligned_cols=158 Identities=14% Similarity=0.177 Sum_probs=99.5
Q ss_pred ccceEEeeecCCcccCCCCC--CCCCceEEEEEEccCccccCChhhcCCCCCcEEEEcccCCCCccc-------------
Q 042541 527 NNASLLSISTDETFSSNWPD--MQGPEVKVVVLNIRTKKYVLPDFLQKMDELKVLIVTNYGFSPAEL------------- 591 (695)
Q Consensus 527 ~~~r~l~~~~~~~~~~~~~~--~~~~~l~~L~l~~~~~~~~~p~~~~~l~~Lr~L~l~~~~~~~~~~------------- 591 (695)
...++|.+..+... ..+.. ..+++|+.|.++.+......|..+.++++|++|++++|.+....+
T Consensus 117 ~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~ 195 (390)
T 3o6n_A 117 PLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSY 195 (390)
T ss_dssp TTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCS
T ss_pred CCCCEEECCCCccC-cCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccccccccccceeeccc
Confidence 45666666554332 11211 256777777777766555555667777777777777765432111
Q ss_pred -------------------------------------------CcccccccCCCCcEEEeccCCCCCc-c-ccccccccc
Q 042541 592 -------------------------------------------NNFRVLSALSKLKKIRLEHVSLPNS-L-ATVRMNHLQ 626 (695)
Q Consensus 592 -------------------------------------------~~~~~l~~l~~L~~L~L~~~~l~~l-p-~i~~l~~L~ 626 (695)
...+.++.+++|++|++++|.+..+ | .++.+++|+
T Consensus 196 n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 275 (390)
T 3o6n_A 196 NLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLE 275 (390)
T ss_dssp SCCSEEECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCC
T ss_pred ccccccCCCCcceEEECCCCeeeeccccccccccEEECCCCCCcccHHHcCCCCccEEECCCCcCCCcChhHccccccCC
Confidence 0112245566777777777777644 4 677777777
Q ss_pred EEeeccccCCcccccchhhhcccCCCccEEecccccccccCchhhcCCCCCceeecccccCCCCCC
Q 042541 627 KVSLVMCNVGQVFRNSTFRISDAFPNLLEMDIDYCNDLIELPDGLCDIVSMEKLRITNCHRLSALP 692 (695)
Q Consensus 627 ~L~l~~~~i~~~~~~~~~~l~~~l~~L~~L~l~~c~~l~~lP~~i~~L~~L~~L~l~~~~~l~~lP 692 (695)
+|++++|.++.++.... .+++|++|++++| .+..+|..++.+++|+.|++++|+ +..+|
T Consensus 276 ~L~L~~n~l~~~~~~~~-----~l~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~L~~N~-i~~~~ 334 (390)
T 3o6n_A 276 RLYISNNRLVALNLYGQ-----PIPTLKVLDLSHN-HLLHVERNQPQFDRLENLYLDHNS-IVTLK 334 (390)
T ss_dssp EEECCSSCCCEEECSSS-----CCTTCCEEECCSS-CCCCCGGGHHHHTTCSEEECCSSC-CCCCC
T ss_pred EEECCCCcCcccCcccC-----CCCCCCEEECCCC-cceecCccccccCcCCEEECCCCc-cceeC
Confidence 77777777776655443 6777888888876 466777777778888888888765 55554
No 60
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.26 E-value=1.5e-11 Score=116.78 Aligned_cols=117 Identities=13% Similarity=0.155 Sum_probs=84.5
Q ss_pred ccCChhhcCCCCCcEEEEcccCCCCcccCcccccccCCCCcEEEeccCCCCCc-c-cccccccccEEeeccccCCccccc
Q 042541 564 YVLPDFLQKMDELKVLIVTNYGFSPAELNNFRVLSALSKLKKIRLEHVSLPNS-L-ATVRMNHLQKVSLVMCNVGQVFRN 641 (695)
Q Consensus 564 ~~~p~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~l-p-~i~~l~~L~~L~l~~~~i~~~~~~ 641 (695)
..+|..+. .+|++|++++|.+.. +.....++.+++|++|+|++|.++.+ | .++++++|++|+|++|.++.+++.
T Consensus 21 ~~ip~~~~--~~l~~L~l~~n~i~~--~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 96 (192)
T 1w8a_A 21 KEIPRDIP--LHTTELLLNDNELGR--ISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNK 96 (192)
T ss_dssp SSCCSCCC--TTCSEEECCSCCCCS--BCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSS
T ss_pred CcCccCCC--CCCCEEECCCCcCCc--cCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHH
Confidence 44555443 278888888876632 11111267788888888888888866 5 788888888888888888888877
Q ss_pred chhhhcccCCCccEEecccccccccCchhhcCCCCCceeecccccCC
Q 042541 642 STFRISDAFPNLLEMDIDYCNDLIELPDGLCDIVSMEKLRITNCHRL 688 (695)
Q Consensus 642 ~~~~l~~~l~~L~~L~l~~c~~l~~lP~~i~~L~~L~~L~l~~~~~l 688 (695)
.+. .+++|++|+|++|......|..++.+++|++|++++|+..
T Consensus 97 ~~~----~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 97 MFL----GLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp SST----TCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred Hhc----CCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 665 7888888888886554455777888888888888887643
No 61
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.26 E-value=8.8e-11 Score=114.06 Aligned_cols=179 Identities=15% Similarity=0.128 Sum_probs=115.7
Q ss_pred CCCCCCCcchHHHHHHHHHcCCceEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCCCCCHHHHHHHHHHhcC
Q 042541 165 PVISPGLDVPLKELKMELFKDGRQFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSKNPNVKAIVQKVLHHKG 244 (695)
Q Consensus 165 ~~~~vGr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~~~~~~~~~~~i~~~l~ 244 (695)
-..++|++..++.+.+++.....+.+.|+|++|+|||++|+.+++.. ....+....+.++.+.......+...+.....
T Consensus 16 ~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (226)
T 2chg_A 16 LDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDL-FGENWRDNFIEMNASDERGIDVVRHKIKEFAR 94 (226)
T ss_dssp GGGCCSCHHHHHHHHHHHHTTCCCCEEEECSTTSSHHHHHHHHHHHH-HGGGGGGGEEEEETTCTTCHHHHHHHHHHHHT
T ss_pred HHHHcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHH-hccccccceEEeccccccChHHHHHHHHHHhc
Confidence 34689999999999999987665569999999999999999998731 12223332344444443333322222111111
Q ss_pred CCCCCCCChHHHHHHHHHHHHhcCCCcEEEEEeCCCCCChH----HHhhhccCCCCCEEEEEcCCCCC------CCCCeE
Q 042541 245 YPVPEFQTDEAAINDLERFFKQMRIEAILLVLDDVWPGSES----LLQKLGFQLPDYKILVTSRSEFP------QFGSVH 314 (695)
Q Consensus 245 ~~~~~~~~~~~~~~~l~~~~~~l~~~~~LlVlDdv~~~~~~----~~~~l~~~~~gs~iivTtR~~~~------~~~~~~ 314 (695)
.. ....+++.+||+||++..... +...+.....++.+|+||+.... .....+
T Consensus 95 ~~------------------~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~r~~~i 156 (226)
T 2chg_A 95 TA------------------PIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVF 156 (226)
T ss_dssp SC------------------CSTTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEE
T ss_pred cc------------------CCCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHHhCcee
Confidence 00 001367899999999876543 22333334456788888876521 112278
Q ss_pred ecCCCChHHHHHHHHHhccCCCCCCCCCchHHHHHHHHhcCCchhHHHHHH
Q 042541 315 YLKPLTYEAARTLFLHSANLQDGNSYIPDENIVSKILRACKGCPLALKVVG 365 (695)
Q Consensus 315 ~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~~ 365 (695)
.+.+++.++..+++...+..... .-..+....|++.++|.|..+..+.
T Consensus 157 ~~~~~~~~~~~~~l~~~~~~~~~---~~~~~~~~~l~~~~~g~~r~l~~~l 204 (226)
T 2chg_A 157 RFKPVPKEAMKKRLLEICEKEGV---KITEDGLEALIYISGGDFRKAINAL 204 (226)
T ss_dssp ECCCCCHHHHHHHHHHHHHHHTC---CBCHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ecCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 99999999999999887643222 1235678889999999998655443
No 62
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.26 E-value=1.1e-11 Score=115.79 Aligned_cols=128 Identities=9% Similarity=0.074 Sum_probs=104.1
Q ss_pred CCCceEEEEEEccCccccCChhhcCCCCCcEEEEcccCCCCcccCcccccccCCCCcEEEeccCCCCCcc-cc-cccccc
Q 042541 548 QGPEVKVVVLNIRTKKYVLPDFLQKMDELKVLIVTNYGFSPAELNNFRVLSALSKLKKIRLEHVSLPNSL-AT-VRMNHL 625 (695)
Q Consensus 548 ~~~~l~~L~l~~~~~~~~~p~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~lp-~i-~~l~~L 625 (695)
.+++++.|.++++... .+|......++|++|++++|.+.. + +.++.+++|++|++++|.+..+| .+ +.+++|
T Consensus 17 ~~~~L~~L~l~~n~l~-~i~~~~~~~~~L~~L~Ls~N~l~~--~---~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 90 (176)
T 1a9n_A 17 NAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRK--L---DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL 90 (176)
T ss_dssp CTTSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCCE--E---CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred CcCCceEEEeeCCCCc-hhHHhhhcCCCCCEEECCCCCCCc--c---cccccCCCCCEEECCCCcccccCcchhhcCCCC
Confidence 5678888888887544 445533334499999999987742 2 45889999999999999999888 55 899999
Q ss_pred cEEeeccccCCcccc-cchhhhcccCCCccEEecccccccccCchh----hcCCCCCceeeccccc
Q 042541 626 QKVSLVMCNVGQVFR-NSTFRISDAFPNLLEMDIDYCNDLIELPDG----LCDIVSMEKLRITNCH 686 (695)
Q Consensus 626 ~~L~l~~~~i~~~~~-~~~~~l~~~l~~L~~L~l~~c~~l~~lP~~----i~~L~~L~~L~l~~~~ 686 (695)
++|++++|.++.+|+ ..+. .+++|++|++++| .+..+|.. ++.+++|+.|++++|.
T Consensus 91 ~~L~L~~N~i~~~~~~~~l~----~l~~L~~L~l~~N-~i~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 91 TELILTNNSLVELGDLDPLA----SLKSLTYLCILRN-PVTNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp CEEECCSCCCCCGGGGGGGG----GCTTCCEEECCSS-GGGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred CEEECCCCcCCcchhhHhhh----cCCCCCEEEecCC-CCCCcHhHHHHHHHHCCccceeCCCcCC
Confidence 999999999988776 2333 8999999999996 46788885 8999999999999875
No 63
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.26 E-value=1.1e-11 Score=143.56 Aligned_cols=161 Identities=19% Similarity=0.222 Sum_probs=120.7
Q ss_pred CccceEEeeecCCccc-----------------CCCCCC---CCCceEEEEEEccCccccCChhhcCCCCCcEEEEcccC
Q 042541 526 PNNASLLSISTDETFS-----------------SNWPDM---QGPEVKVVVLNIRTKKYVLPDFLQKMDELKVLIVTNYG 585 (695)
Q Consensus 526 ~~~~r~l~~~~~~~~~-----------------~~~~~~---~~~~l~~L~l~~~~~~~~~p~~~~~l~~Lr~L~l~~~~ 585 (695)
....+.|.+..+.... ..+..+ .+++|+.|.|+.|...+.+|..+.++++|++|++++|.
T Consensus 447 L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~ 526 (876)
T 4ecn_A 447 LTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNR 526 (876)
T ss_dssp CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCT
T ss_pred CCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCC
Confidence 3467888887665333 133333 58999999999998889999999999999999999987
Q ss_pred -CCCcccC----ccc-ccccCCCCcEEEeccCCCCCccc---ccccccccEEeeccccCCcccccchhhhcccCCCccEE
Q 042541 586 -FSPAELN----NFR-VLSALSKLKKIRLEHVSLPNSLA---TVRMNHLQKVSLVMCNVGQVFRNSTFRISDAFPNLLEM 656 (695)
Q Consensus 586 -~~~~~~~----~~~-~l~~l~~L~~L~L~~~~l~~lp~---i~~l~~L~~L~l~~~~i~~~~~~~~~~l~~~l~~L~~L 656 (695)
+....++ .++ .+..+++|++|+|++|.+..+|. ++++++|++|+|++|.++.+| .+ . .+++|+.|
T Consensus 527 ~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~~-~----~L~~L~~L 600 (876)
T 4ecn_A 527 GISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLE-AF-G----TNVKLTDL 600 (876)
T ss_dssp TSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCBCC-CC-C----TTSEESEE
T ss_pred CcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcccch-hh-c----CCCcceEE
Confidence 5320121 111 23445589999999998888874 788889999999999888665 33 3 78888888
Q ss_pred ecccccccccCchhhcCCCC-CceeecccccCCCCCCCC
Q 042541 657 DIDYCNDLIELPDGLCDIVS-MEKLRITNCHRLSALPEG 694 (695)
Q Consensus 657 ~l~~c~~l~~lP~~i~~L~~-L~~L~l~~~~~l~~lP~~ 694 (695)
++++|. +..+|.+++++++ |++|+|++|. +..+|..
T Consensus 601 ~Ls~N~-l~~lp~~l~~l~~~L~~L~Ls~N~-L~~lp~~ 637 (876)
T 4ecn_A 601 KLDYNQ-IEEIPEDFCAFTDQVEGLGFSHNK-LKYIPNI 637 (876)
T ss_dssp ECCSSC-CSCCCTTSCEECTTCCEEECCSSC-CCSCCSC
T ss_pred ECcCCc-cccchHHHhhccccCCEEECcCCC-CCcCchh
Confidence 888864 5588888888888 8888888866 6677754
No 64
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.26 E-value=2.5e-11 Score=132.81 Aligned_cols=88 Identities=23% Similarity=0.274 Sum_probs=36.5
Q ss_pred CCCCcEEEeccCCCCCcc--cccccccccEEeeccccCCcccccchhhhcccCCCccEEecccccccccCchhhcCCCCC
Q 042541 600 LSKLKKIRLEHVSLPNSL--ATVRMNHLQKVSLVMCNVGQVFRNSTFRISDAFPNLLEMDIDYCNDLIELPDGLCDIVSM 677 (695)
Q Consensus 600 l~~L~~L~L~~~~l~~lp--~i~~l~~L~~L~l~~~~i~~~~~~~~~~l~~~l~~L~~L~l~~c~~l~~lP~~i~~L~~L 677 (695)
+++|+.|++++|.++.+| .+.++++|++|++++|.+..+++..+. .+++|+.|++++|..+..+|..+....+|
T Consensus 151 l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~----~l~~L~~L~l~~~~~~~~~~~~~~~~~~L 226 (477)
T 2id5_A 151 LNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFK----RLYRLKVLEISHWPYLDTMTPNCLYGLNL 226 (477)
T ss_dssp CTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSC----SCTTCCEEEEECCTTCCEECTTTTTTCCC
T ss_pred CCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcc----cCcccceeeCCCCccccccCcccccCccc
Confidence 333344444443333333 233344444444444443333333332 34444444444444444444444444444
Q ss_pred ceeecccccCCCCCC
Q 042541 678 EKLRITNCHRLSALP 692 (695)
Q Consensus 678 ~~L~l~~~~~l~~lP 692 (695)
+.|++++|. +..+|
T Consensus 227 ~~L~l~~n~-l~~~~ 240 (477)
T 2id5_A 227 TSLSITHCN-LTAVP 240 (477)
T ss_dssp SEEEEESSC-CCSCC
T ss_pred cEEECcCCc-ccccC
Confidence 445554433 43443
No 65
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.25 E-value=7.4e-12 Score=141.85 Aligned_cols=125 Identities=13% Similarity=0.161 Sum_probs=73.0
Q ss_pred CChhhcCCCCCcEEEEcccCCCCcccC--------------cccccc--cCCCCcEEEeccCCCC-Ccc-cccccccccE
Q 042541 566 LPDFLQKMDELKVLIVTNYGFSPAELN--------------NFRVLS--ALSKLKKIRLEHVSLP-NSL-ATVRMNHLQK 627 (695)
Q Consensus 566 ~p~~~~~l~~Lr~L~l~~~~~~~~~~~--------------~~~~l~--~l~~L~~L~L~~~~l~-~lp-~i~~l~~L~~ 627 (695)
+|..++++++|++|+|++|.+...... -++.++ ++++|++|+|++|.+. .+| .++++++|++
T Consensus 198 ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 277 (636)
T 4eco_A 198 VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQL 277 (636)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCE
T ss_pred CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCE
Confidence 566667777777777777665331000 122355 6777777777777655 666 6777777777
Q ss_pred Eeecccc-CCc--ccccchhhhc--ccCCCccEEecccccccccCch--hhcCCCCCceeecccccCCCCCC
Q 042541 628 VSLVMCN-VGQ--VFRNSTFRIS--DAFPNLLEMDIDYCNDLIELPD--GLCDIVSMEKLRITNCHRLSALP 692 (695)
Q Consensus 628 L~l~~~~-i~~--~~~~~~~~l~--~~l~~L~~L~l~~c~~l~~lP~--~i~~L~~L~~L~l~~~~~l~~lP 692 (695)
|++++|. +++ +|+.+. .++ ..+++|++|++++|. +..+|. .++++++|++|++++|...+.+|
T Consensus 278 L~Ls~n~~l~~~~lp~~~~-~L~~~~~l~~L~~L~L~~n~-l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip 347 (636)
T 4eco_A 278 INVACNRGISGEQLKDDWQ-ALADAPVGEKIQIIYIGYNN-LKTFPVETSLQKMKKLGMLECLYNQLEGKLP 347 (636)
T ss_dssp EECTTCTTSCHHHHHHHHH-HHHHSGGGGTCCEEECCSSC-CSSCCCHHHHTTCTTCCEEECCSCCCEEECC
T ss_pred EECcCCCCCccccchHHHH-hhhccccCCCCCEEECCCCc-CCccCchhhhccCCCCCEEeCcCCcCccchh
Confidence 7777776 664 333332 000 012667777776653 446666 66677777777776655333555
No 66
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.25 E-value=2.1e-11 Score=125.42 Aligned_cols=159 Identities=13% Similarity=0.133 Sum_probs=112.8
Q ss_pred CCccceEEeeecCCcccCCCCCC-C-----CCceEEEEEEccCccccCChhhcCCCCCcEEEEcccCCCCcccCccccc-
Q 042541 525 HPNNASLLSISTDETFSSNWPDM-Q-----GPEVKVVVLNIRTKKYVLPDFLQKMDELKVLIVTNYGFSPAELNNFRVL- 597 (695)
Q Consensus 525 ~~~~~r~l~~~~~~~~~~~~~~~-~-----~~~l~~L~l~~~~~~~~~p~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~l- 597 (695)
.....++|.+..+..... +..+ . +++|+.|.++.+......|..+..+++|++|++++|.+... ...++.+
T Consensus 119 ~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~~ 196 (312)
T 1wwl_A 119 TGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGE-RGLISALC 196 (312)
T ss_dssp CSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHH-HHHHHHSC
T ss_pred cCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcc-hHHHHHHH
Confidence 345677777776543222 1111 1 37888888888877776777888899999999988875321 1111123
Q ss_pred -ccCCCCcEEEeccCCCCCcc-----cccccccccEEeeccccCCcccc-cchhhhcccCCCccEEecccccccccCchh
Q 042541 598 -SALSKLKKIRLEHVSLPNSL-----ATVRMNHLQKVSLVMCNVGQVFR-NSTFRISDAFPNLLEMDIDYCNDLIELPDG 670 (695)
Q Consensus 598 -~~l~~L~~L~L~~~~l~~lp-----~i~~l~~L~~L~l~~~~i~~~~~-~~~~~l~~~l~~L~~L~l~~c~~l~~lP~~ 670 (695)
+.+++|++|++++|.++.+| .+.++++|++|++++|.++..+| ..+. .+++|++|++++| .+..+|..
T Consensus 197 ~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~----~l~~L~~L~Ls~N-~l~~ip~~ 271 (312)
T 1wwl_A 197 PLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCD----WPSQLNSLNLSFT-GLKQVPKG 271 (312)
T ss_dssp TTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCC----CCTTCCEEECTTS-CCSSCCSS
T ss_pred hccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhh----hcCCCCEEECCCC-ccChhhhh
Confidence 77888999999999888444 23467899999999998888664 3333 6789999999986 46788887
Q ss_pred hcCCCCCceeecccccCCCCCCC
Q 042541 671 LCDIVSMEKLRITNCHRLSALPE 693 (695)
Q Consensus 671 i~~L~~L~~L~l~~~~~l~~lP~ 693 (695)
+. ++|++|++++|. +..+|.
T Consensus 272 ~~--~~L~~L~Ls~N~-l~~~p~ 291 (312)
T 1wwl_A 272 LP--AKLSVLDLSYNR-LDRNPS 291 (312)
T ss_dssp CC--SEEEEEECCSSC-CCSCCC
T ss_pred cc--CCceEEECCCCC-CCCChh
Confidence 77 889999999865 777764
No 67
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.25 E-value=1.1e-11 Score=140.03 Aligned_cols=132 Identities=14% Similarity=0.121 Sum_probs=73.6
Q ss_pred CCCceEEEEEEccCccccCChhhcCCCCCcEEEEcccCCCCcccCcccccccCCCCcEEEeccCCCCCcc--cccccccc
Q 042541 548 QGPEVKVVVLNIRTKKYVLPDFLQKMDELKVLIVTNYGFSPAELNNFRVLSALSKLKKIRLEHVSLPNSL--ATVRMNHL 625 (695)
Q Consensus 548 ~~~~l~~L~l~~~~~~~~~p~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~lp--~i~~l~~L 625 (695)
.+++|+.|.++.+......|..+..+++|++|++++|.+....+ +..++.+++|++|++++|.+..++ .++++++|
T Consensus 422 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 499 (606)
T 3vq2_A 422 SLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTL--SNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRL 499 (606)
T ss_dssp TCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEE--CSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred ccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcch--HHhhccCCCCCEEECCCCcCCccChhhhcccccC
Confidence 44555555555554444455555555556666655554421111 112455666666666666665433 55666666
Q ss_pred cEEeeccccCCcccccchhhhcccCCCccEEecccccccccCchhhcCCC-CCceeeccccc
Q 042541 626 QKVSLVMCNVGQVFRNSTFRISDAFPNLLEMDIDYCNDLIELPDGLCDIV-SMEKLRITNCH 686 (695)
Q Consensus 626 ~~L~l~~~~i~~~~~~~~~~l~~~l~~L~~L~l~~c~~l~~lP~~i~~L~-~L~~L~l~~~~ 686 (695)
++|++++|.++..+|..+. .+++|++|++++|. +..+|..+..++ +|++|++++|+
T Consensus 500 ~~L~Ls~N~l~~~~~~~~~----~l~~L~~L~l~~N~-l~~~p~~~~~l~~~L~~l~l~~N~ 556 (606)
T 3vq2_A 500 QLLNMSHNNLLFLDSSHYN----QLYSLSTLDCSFNR-IETSKGILQHFPKSLAFFNLTNNS 556 (606)
T ss_dssp CEEECCSSCCSCEEGGGTT----TCTTCCEEECTTSC-CCCEESCGGGSCTTCCEEECCSCC
T ss_pred CEEECCCCcCCCcCHHHcc----CCCcCCEEECCCCc-CcccCHhHhhhcccCcEEEccCCC
Confidence 6666666666665554444 56666666666643 556666666664 46666666655
No 68
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.24 E-value=1.7e-11 Score=125.92 Aligned_cols=162 Identities=12% Similarity=0.117 Sum_probs=116.8
Q ss_pred CccceEEeeecCCcccCCC-----CCCCCCceEEEEEEccCccccCChhhcCCCCCcEEEEcccCCCCc-ccCccccccc
Q 042541 526 PNNASLLSISTDETFSSNW-----PDMQGPEVKVVVLNIRTKKYVLPDFLQKMDELKVLIVTNYGFSPA-ELNNFRVLSA 599 (695)
Q Consensus 526 ~~~~r~l~~~~~~~~~~~~-----~~~~~~~l~~L~l~~~~~~~~~p~~~~~l~~Lr~L~l~~~~~~~~-~~~~~~~l~~ 599 (695)
....+.+.+..+....... ....+++|+.|.++.+......|..+..+++|++|++++|.+... .++....++.
T Consensus 116 ~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~ 195 (310)
T 4glp_A 116 GLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHK 195 (310)
T ss_dssp CBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTS
T ss_pred CCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhc
Confidence 4566777776654322111 012578999999999887777778899999999999999876321 1111222468
Q ss_pred CCCCcEEEeccCCCCCcc-c----ccccccccEEeeccccCCcccccchhhhcccCCCccEEecccccccccCchhhcCC
Q 042541 600 LSKLKKIRLEHVSLPNSL-A----TVRMNHLQKVSLVMCNVGQVFRNSTFRISDAFPNLLEMDIDYCNDLIELPDGLCDI 674 (695)
Q Consensus 600 l~~L~~L~L~~~~l~~lp-~----i~~l~~L~~L~l~~~~i~~~~~~~~~~l~~~l~~L~~L~l~~c~~l~~lP~~i~~L 674 (695)
+++|++|+|++|.++.+| . ++.+++|++|+|++|.++...|..+..+. .+++|++|++++| .+..+|..+.
T Consensus 196 l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~-~~~~L~~L~Ls~N-~l~~lp~~~~-- 271 (310)
T 4glp_A 196 FPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCM-WSSALNSLNLSFA-GLEQVPKGLP-- 271 (310)
T ss_dssp SCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCC-CCTTCCCEECCSS-CCCSCCSCCC--
T ss_pred CCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhcc-CcCcCCEEECCCC-CCCchhhhhc--
Confidence 889999999999998766 3 46789999999999999988443332111 2379999999986 5678998775
Q ss_pred CCCceeecccccCCCCCC
Q 042541 675 VSMEKLRITNCHRLSALP 692 (695)
Q Consensus 675 ~~L~~L~l~~~~~l~~lP 692 (695)
++|++|++++|. +..+|
T Consensus 272 ~~L~~L~Ls~N~-l~~~~ 288 (310)
T 4glp_A 272 AKLRVLDLSSNR-LNRAP 288 (310)
T ss_dssp SCCSCEECCSCC-CCSCC
T ss_pred CCCCEEECCCCc-CCCCc
Confidence 899999999976 66655
No 69
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.24 E-value=2.8e-11 Score=132.36 Aligned_cols=151 Identities=17% Similarity=0.255 Sum_probs=82.4
Q ss_pred CccceEEeeecCCcccCCCC-CCCCCceEEEEEEccCccccCChhhcCCCCCcEEEEcccCCCCcccCcccccccCCCCc
Q 042541 526 PNNASLLSISTDETFSSNWP-DMQGPEVKVVVLNIRTKKYVLPDFLQKMDELKVLIVTNYGFSPAELNNFRVLSALSKLK 604 (695)
Q Consensus 526 ~~~~r~l~~~~~~~~~~~~~-~~~~~~l~~L~l~~~~~~~~~p~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~ 604 (695)
+...++|.+..+........ ...+++|+.|.|+.+......|..|.++++|++|+|++|.+.. ++ ...+..+++|+
T Consensus 31 ~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~--~~-~~~~~~l~~L~ 107 (477)
T 2id5_A 31 PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKL--IP-LGVFTGLSNLT 107 (477)
T ss_dssp CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCS--CC-TTSSTTCTTCC
T ss_pred CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCc--cC-cccccCCCCCC
Confidence 44667777665543222211 2256777777777766555566677777777777777765531 11 11245566666
Q ss_pred EEEeccCCCCCcc--cccccccccEEeeccccCCcccccchhhhcccCCCccEEecccccccccCch-hhcCCCCCceee
Q 042541 605 KIRLEHVSLPNSL--ATVRMNHLQKVSLVMCNVGQVFRNSTFRISDAFPNLLEMDIDYCNDLIELPD-GLCDIVSMEKLR 681 (695)
Q Consensus 605 ~L~L~~~~l~~lp--~i~~l~~L~~L~l~~~~i~~~~~~~~~~l~~~l~~L~~L~l~~c~~l~~lP~-~i~~L~~L~~L~ 681 (695)
+|+|++|.+..++ .+.++++|++|++++|.+..+++..+. .+++|+.|++++| .+..+|. .+.++++|+.|+
T Consensus 108 ~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~----~l~~L~~L~l~~n-~l~~~~~~~l~~l~~L~~L~ 182 (477)
T 2id5_A 108 KLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFS----GLNSLEQLTLEKC-NLTSIPTEALSHLHGLIVLR 182 (477)
T ss_dssp EEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSST----TCTTCCEEEEESC-CCSSCCHHHHTTCTTCCEEE
T ss_pred EEECCCCccccCChhHccccccCCEEECCCCccceeChhhcc----CCCCCCEEECCCC-cCcccChhHhcccCCCcEEe
Confidence 6666666665433 555666666666666666555554443 4555555555554 2333332 234444444444
Q ss_pred ccc
Q 042541 682 ITN 684 (695)
Q Consensus 682 l~~ 684 (695)
+++
T Consensus 183 l~~ 185 (477)
T 2id5_A 183 LRH 185 (477)
T ss_dssp EES
T ss_pred CCC
Confidence 443
No 70
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.24 E-value=1.6e-11 Score=128.71 Aligned_cols=158 Identities=16% Similarity=0.085 Sum_probs=111.3
Q ss_pred ccceEEeeecCCcccCCC-CCCCCCceEEEEEEccCccccCChhhcCCCCCcEEEEcccCCCCcccCcccccccCCCCcE
Q 042541 527 NNASLLSISTDETFSSNW-PDMQGPEVKVVVLNIRTKKYVLPDFLQKMDELKVLIVTNYGFSPAELNNFRVLSALSKLKK 605 (695)
Q Consensus 527 ~~~r~l~~~~~~~~~~~~-~~~~~~~l~~L~l~~~~~~~~~p~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~ 605 (695)
...+++.+..+....... ....+++|+.|.++.+......|..+.++++|++|++++|.+.. ++ ...++.+++|++
T Consensus 52 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~--~~-~~~~~~l~~L~~ 128 (353)
T 2z80_A 52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSN--LS-SSWFKPLSSLTF 128 (353)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSS--CC-HHHHTTCTTCSE
T ss_pred ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCc--CC-HhHhCCCccCCE
Confidence 467777776654322222 12367888888887776666666678888888888888876632 11 122677888888
Q ss_pred EEeccCCCCCcc---cccccccccEEeeccc-cCCcccccchhhhcccCCCccEEecccccccccCchhhcCCCCCceee
Q 042541 606 IRLEHVSLPNSL---ATVRMNHLQKVSLVMC-NVGQVFRNSTFRISDAFPNLLEMDIDYCNDLIELPDGLCDIVSMEKLR 681 (695)
Q Consensus 606 L~L~~~~l~~lp---~i~~l~~L~~L~l~~~-~i~~~~~~~~~~l~~~l~~L~~L~l~~c~~l~~lP~~i~~L~~L~~L~ 681 (695)
|++++|.+..+| .++++++|++|++++| .+..+++..+. .+++|++|++++|......|..++++++|++|+
T Consensus 129 L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~----~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 204 (353)
T 2z80_A 129 LNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFA----GLTFLEELEIDASDLQSYEPKSLKSIQNVSHLI 204 (353)
T ss_dssp EECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTT----TCCEEEEEEEEETTCCEECTTTTTTCSEEEEEE
T ss_pred EECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHcc----CCCCCCEEECCCCCcCccCHHHHhccccCCeec
Confidence 888888888776 3677888888888888 47777666655 788888888888765445577788888888888
Q ss_pred cccccCCCCCC
Q 042541 682 ITNCHRLSALP 692 (695)
Q Consensus 682 l~~~~~l~~lP 692 (695)
+++|. ++.+|
T Consensus 205 l~~n~-l~~~~ 214 (353)
T 2z80_A 205 LHMKQ-HILLL 214 (353)
T ss_dssp EECSC-STTHH
T ss_pred CCCCc-cccch
Confidence 88865 55544
No 71
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.24 E-value=1.7e-11 Score=137.90 Aligned_cols=126 Identities=14% Similarity=0.077 Sum_probs=61.3
Q ss_pred CCceEEEEEEccCccccCChhhcCCCCCcEEEEcccCCCCcccCcccccccCCCCcEEEeccCCCCCcc-c-cccccccc
Q 042541 549 GPEVKVVVLNIRTKKYVLPDFLQKMDELKVLIVTNYGFSPAELNNFRVLSALSKLKKIRLEHVSLPNSL-A-TVRMNHLQ 626 (695)
Q Consensus 549 ~~~l~~L~l~~~~~~~~~p~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~lp-~-i~~l~~L~ 626 (695)
+++|++|.++.+......|..|..+++|++|+|++|.+... .+..++.+++|++|+|++|.+..+| . ++++++|+
T Consensus 74 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~---~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~ 150 (597)
T 3oja_B 74 FRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYL---PPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLT 150 (597)
T ss_dssp CCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCC---CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred CCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCC---CHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCC
Confidence 44555555555444444444555555555555555544211 0112445555555555555555555 2 35555555
Q ss_pred EEeeccccCCcccccchhhhcccCCCccEEecccccccccCchhhcCCCCCceeeccc
Q 042541 627 KVSLVMCNVGQVFRNSTFRISDAFPNLLEMDIDYCNDLIELPDGLCDIVSMEKLRITN 684 (695)
Q Consensus 627 ~L~l~~~~i~~~~~~~~~~l~~~l~~L~~L~l~~c~~l~~lP~~i~~L~~L~~L~l~~ 684 (695)
+|+|++|.++.+++..+. .+++|++|++++| .+..+| ++.+++|++|++++
T Consensus 151 ~L~Ls~N~l~~~~~~~~~----~l~~L~~L~L~~N-~l~~~~--~~~l~~L~~L~l~~ 201 (597)
T 3oja_B 151 TLSMSNNNLERIEDDTFQ----ATTSLQNLQLSSN-RLTHVD--LSLIPSLFHANVSY 201 (597)
T ss_dssp EEECCSSCCCBCCTTTTT----TCTTCCEEECTTS-CCSBCC--GGGCTTCSEEECCS
T ss_pred EEEeeCCcCCCCChhhhh----cCCcCcEEECcCC-CCCCcC--hhhhhhhhhhhccc
Confidence 555555555555554443 4555555555554 233333 33344444444444
No 72
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.24 E-value=1.4e-11 Score=129.15 Aligned_cols=159 Identities=13% Similarity=0.128 Sum_probs=110.7
Q ss_pred CccceEEeeecCCcccCCCC-CCCCCceEEEEEEccCccccCChhhcCCCCCcEEEEcccCCCCcccCcccccccCCCCc
Q 042541 526 PNNASLLSISTDETFSSNWP-DMQGPEVKVVVLNIRTKKYVLPDFLQKMDELKVLIVTNYGFSPAELNNFRVLSALSKLK 604 (695)
Q Consensus 526 ~~~~r~l~~~~~~~~~~~~~-~~~~~~l~~L~l~~~~~~~~~p~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~ 604 (695)
....+++.+..+......+. ...+++|+.|.++.+......+..+.++++|++|++++|.+. .++....+..+++|+
T Consensus 75 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~--~l~~~~~~~~l~~L~ 152 (353)
T 2z80_A 75 CVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK--TLGETSLFSHLTKLQ 152 (353)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCS--SSCSSCSCTTCTTCC
T ss_pred CCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCc--ccCchhhhccCCCCc
Confidence 45677777765543222221 236788888888877555433345788888888888887663 222212367788888
Q ss_pred EEEeccC-CCCCcc--cccccccccEEeeccccCCcccccchhhhcccCCCccEEecccccccccCchhh-cCCCCCcee
Q 042541 605 KIRLEHV-SLPNSL--ATVRMNHLQKVSLVMCNVGQVFRNSTFRISDAFPNLLEMDIDYCNDLIELPDGL-CDIVSMEKL 680 (695)
Q Consensus 605 ~L~L~~~-~l~~lp--~i~~l~~L~~L~l~~~~i~~~~~~~~~~l~~~l~~L~~L~l~~c~~l~~lP~~i-~~L~~L~~L 680 (695)
+|++++| .+..++ .++++++|++|++++|.++..++..+. .+++|++|++++|. +..+|..+ ..+++|+.|
T Consensus 153 ~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~----~l~~L~~L~l~~n~-l~~~~~~~~~~~~~L~~L 227 (353)
T 2z80_A 153 ILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLK----SIQNVSHLILHMKQ-HILLLEIFVDVTSSVECL 227 (353)
T ss_dssp EEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTT----TCSEEEEEEEECSC-STTHHHHHHHHTTTEEEE
T ss_pred EEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHh----ccccCCeecCCCCc-cccchhhhhhhcccccEE
Confidence 8888888 466664 778888888888888888887666665 78888888888864 57777653 458888888
Q ss_pred ecccccCCCCCC
Q 042541 681 RITNCHRLSALP 692 (695)
Q Consensus 681 ~l~~~~~l~~lP 692 (695)
++++|. +..+|
T Consensus 228 ~L~~n~-l~~~~ 238 (353)
T 2z80_A 228 ELRDTD-LDTFH 238 (353)
T ss_dssp EEESCB-CTTCC
T ss_pred ECCCCc-ccccc
Confidence 888865 55443
No 73
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.24 E-value=7.5e-11 Score=133.60 Aligned_cols=159 Identities=17% Similarity=0.155 Sum_probs=120.1
Q ss_pred cceEEeeecCCcccCCCC--------CCCCCceEEEEEEccCccccCCh-hhcCCCCCcEEEEcccCCCCcccCcc----
Q 042541 528 NASLLSISTDETFSSNWP--------DMQGPEVKVVVLNIRTKKYVLPD-FLQKMDELKVLIVTNYGFSPAELNNF---- 594 (695)
Q Consensus 528 ~~r~l~~~~~~~~~~~~~--------~~~~~~l~~L~l~~~~~~~~~p~-~~~~l~~Lr~L~l~~~~~~~~~~~~~---- 594 (695)
..+.+.+..+......+. ...+++|+.|.++.+... .+|. .+..+++|++|++++|.+. .++..
T Consensus 403 ~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~L~~L~Ls~N~l~--~i~~~~~~~ 479 (636)
T 4eco_A 403 VMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS-KFPKELFSTGSPLSSINLMGNMLT--EIPKNSLKD 479 (636)
T ss_dssp CEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCC-SCCTHHHHTTCCCSEEECCSSCCS--BCCSSSSEE
T ss_pred ccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccC-cCCHHHHccCCCCCEEECCCCCCC--CcCHHHhcc
Confidence 466777665543221111 125668999999888665 4555 5667899999999998774 22211
Q ss_pred --cccccCCCCcEEEeccCCCCCcc-ccc--ccccccEEeeccccCCcccccchhhhcccCCCccEEecc------cccc
Q 042541 595 --RVLSALSKLKKIRLEHVSLPNSL-ATV--RMNHLQKVSLVMCNVGQVFRNSTFRISDAFPNLLEMDID------YCND 663 (695)
Q Consensus 595 --~~l~~l~~L~~L~L~~~~l~~lp-~i~--~l~~L~~L~l~~~~i~~~~~~~~~~l~~~l~~L~~L~l~------~c~~ 663 (695)
+.+.++++|++|+|++|.++.+| .+. .+++|++|+|++|.++.+|.... .+++|++|+++ +|..
T Consensus 480 ~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~-----~l~~L~~L~Ls~N~~ls~N~l 554 (636)
T 4eco_A 480 ENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPL-----NSSTLKGFGIRNQRDAQGNRT 554 (636)
T ss_dssp TTEECTTGGGCCEEECCSSCCCBCCGGGSTTTCTTCCEEECCSSCCSSCCCGGG-----GCSSCCEEECCSCBCTTCCBC
T ss_pred ccccccccCCccEEECcCCcCCccChhhhhccCCCcCEEECCCCCCCCcChhhh-----cCCCCCEEECCCCcccccCcc
Confidence 01223448999999999999999 887 99999999999999999766665 89999999995 4556
Q ss_pred cccCchhhcCCCCCceeecccccCCCCCCCCC
Q 042541 664 LIELPDGLCDIVSMEKLRITNCHRLSALPEGI 695 (695)
Q Consensus 664 l~~lP~~i~~L~~L~~L~l~~~~~l~~lP~~i 695 (695)
.+.+|.+++++++|+.|+|++|. ++.+|..+
T Consensus 555 ~~~~p~~l~~l~~L~~L~Ls~N~-l~~ip~~~ 585 (636)
T 4eco_A 555 LREWPEGITLCPSLTQLQIGSND-IRKVNEKI 585 (636)
T ss_dssp CCCCCTTGGGCSSCCEEECCSSC-CCBCCSCC
T ss_pred cccChHHHhcCCCCCEEECCCCc-CCccCHhH
Confidence 77899999999999999999977 69999753
No 74
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.24 E-value=4.5e-11 Score=116.09 Aligned_cols=121 Identities=13% Similarity=0.147 Sum_probs=99.1
Q ss_pred ccCChhhcCCCCCcEEEEcccCCCCcccCcccccccCCCCcEEEeccCCCCCc-c-cccccccccEEeeccccCCccccc
Q 042541 564 YVLPDFLQKMDELKVLIVTNYGFSPAELNNFRVLSALSKLKKIRLEHVSLPNS-L-ATVRMNHLQKVSLVMCNVGQVFRN 641 (695)
Q Consensus 564 ~~~p~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~l-p-~i~~l~~L~~L~l~~~~i~~~~~~ 641 (695)
..+|..+. ++|+.|++++|.+.. ++ ...+..+++|++|+|++|.+..+ | .+.++++|++|+|++|.++.+|+.
T Consensus 24 ~~iP~~l~--~~l~~L~l~~n~i~~--i~-~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~ 98 (220)
T 2v9t_B 24 TEIPTNLP--ETITEIRLEQNTIKV--IP-PGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKS 98 (220)
T ss_dssp SSCCSSCC--TTCCEEECCSSCCCE--EC-TTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTT
T ss_pred CcCCCccC--cCCCEEECCCCcCCC--cC-HhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHh
Confidence 45565443 689999999987742 11 12378899999999999999977 5 899999999999999999999998
Q ss_pred chhhhcccCCCccEEecccccccccCchhhcCCCCCceeecccccCCCCCCCC
Q 042541 642 STFRISDAFPNLLEMDIDYCNDLIELPDGLCDIVSMEKLRITNCHRLSALPEG 694 (695)
Q Consensus 642 ~~~~l~~~l~~L~~L~l~~c~~l~~lP~~i~~L~~L~~L~l~~~~~l~~lP~~ 694 (695)
.+. .+++|++|+|++|......|..+..+++|++|+|++|. +..+|.+
T Consensus 99 ~f~----~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~ 146 (220)
T 2v9t_B 99 LFE----GLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNK-LQTIAKG 146 (220)
T ss_dssp TTT----TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTT
T ss_pred Hcc----CCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCc-CCEECHH
Confidence 876 89999999999975444446679999999999999976 7777753
No 75
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.23 E-value=6.5e-11 Score=137.05 Aligned_cols=139 Identities=14% Similarity=0.152 Sum_probs=112.3
Q ss_pred CCCceEEEEEEccCccccCChh-hcCCCCCcEEEEcccCCCCcccCcc------cccccCCCCcEEEeccCCCCCcc-cc
Q 042541 548 QGPEVKVVVLNIRTKKYVLPDF-LQKMDELKVLIVTNYGFSPAELNNF------RVLSALSKLKKIRLEHVSLPNSL-AT 619 (695)
Q Consensus 548 ~~~~l~~L~l~~~~~~~~~p~~-~~~l~~Lr~L~l~~~~~~~~~~~~~------~~l~~l~~L~~L~L~~~~l~~lp-~i 619 (695)
.+++|+.|.++.|... .+|.. +..+++|+.|+|++|.+. .++.. +.+.+|++|++|+|++|.+..+| .+
T Consensus 671 ~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~--~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l 747 (876)
T 4ecn_A 671 KGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMT--SIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDF 747 (876)
T ss_dssp CCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCS--CCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGGG
T ss_pred cCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCC--ccChHHhccccccccccCCccEEECCCCCCccchHHh
Confidence 4457888888877655 56764 458999999999998764 22211 11334559999999999999999 88
Q ss_pred c--ccccccEEeeccccCCcccccchhhhcccCCCccEEeccc------ccccccCchhhcCCCCCceeecccccCCCCC
Q 042541 620 V--RMNHLQKVSLVMCNVGQVFRNSTFRISDAFPNLLEMDIDY------CNDLIELPDGLCDIVSMEKLRITNCHRLSAL 691 (695)
Q Consensus 620 ~--~l~~L~~L~l~~~~i~~~~~~~~~~l~~~l~~L~~L~l~~------c~~l~~lP~~i~~L~~L~~L~l~~~~~l~~l 691 (695)
. .+++|+.|+|++|.++.+|.... .+++|+.|+|++ |.....+|..++++++|+.|+|++|. ++.+
T Consensus 748 ~~~~l~~L~~L~Ls~N~L~~lp~~l~-----~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~-L~~I 821 (876)
T 4ecn_A 748 RATTLPYLSNMDVSYNCFSSFPTQPL-----NSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSND-IRKV 821 (876)
T ss_dssp STTTCTTCCEEECCSSCCSSCCCGGG-----GCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSC-CCBC
T ss_pred hhccCCCcCEEEeCCCCCCccchhhh-----cCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCC-CCcc
Confidence 7 99999999999999999776665 899999999976 55677899999999999999999977 6999
Q ss_pred CCCC
Q 042541 692 PEGI 695 (695)
Q Consensus 692 P~~i 695 (695)
|..+
T Consensus 822 p~~l 825 (876)
T 4ecn_A 822 DEKL 825 (876)
T ss_dssp CSCC
T ss_pred CHhh
Confidence 9864
No 76
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.23 E-value=6.6e-11 Score=121.34 Aligned_cols=152 Identities=13% Similarity=0.189 Sum_probs=119.8
Q ss_pred CCccceEEeeecCCcccCCCCCCCCCceEEEEEEccCccccCChhhcCCCCCcEEEEcccCCCCcccCcccccccCCCCc
Q 042541 525 HPNNASLLSISTDETFSSNWPDMQGPEVKVVVLNIRTKKYVLPDFLQKMDELKVLIVTNYGFSPAELNNFRVLSALSKLK 604 (695)
Q Consensus 525 ~~~~~r~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~p~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~ 604 (695)
.....++|.+..+... .......+++|+.|.++.+.... +|. +..+++|++|++++|.+.. .+.++.+++|+
T Consensus 83 ~l~~L~~L~L~~n~l~-~~~~~~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~-----~~~l~~l~~L~ 154 (308)
T 1h6u_A 83 NLTKITELELSGNPLK-NVSAIAGLQSIKTLDLTSTQITD-VTP-LAGLSNLQVLYLDLNQITN-----ISPLAGLTNLQ 154 (308)
T ss_dssp TCCSCCEEECCSCCCS-CCGGGTTCTTCCEEECTTSCCCC-CGG-GTTCTTCCEEECCSSCCCC-----CGGGGGCTTCC
T ss_pred cCCCCCEEEccCCcCC-CchhhcCCCCCCEEECCCCCCCC-chh-hcCCCCCCEEECCCCccCc-----CccccCCCCcc
Confidence 3457788888766532 22233478899999998885543 343 8899999999999987642 22278899999
Q ss_pred EEEeccCCCCCcccccccccccEEeeccccCCcccccchhhhcccCCCccEEecccccccccCchhhcCCCCCceeeccc
Q 042541 605 KIRLEHVSLPNSLATVRMNHLQKVSLVMCNVGQVFRNSTFRISDAFPNLLEMDIDYCNDLIELPDGLCDIVSMEKLRITN 684 (695)
Q Consensus 605 ~L~L~~~~l~~lp~i~~l~~L~~L~l~~~~i~~~~~~~~~~l~~~l~~L~~L~l~~c~~l~~lP~~i~~L~~L~~L~l~~ 684 (695)
+|++++|.+..++.++.+++|++|++++|.++.+++ +. .+++|+.|++++| .+..+|. +..+++|+.|++++
T Consensus 155 ~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~--l~----~l~~L~~L~L~~N-~l~~~~~-l~~l~~L~~L~l~~ 226 (308)
T 1h6u_A 155 YLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP--LA----SLPNLIEVHLKNN-QISDVSP-LANTSNLFIVTLTN 226 (308)
T ss_dssp EEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG--GG----GCTTCCEEECTTS-CCCBCGG-GTTCTTCCEEEEEE
T ss_pred EEEccCCcCCCChhhcCCCCCCEEECCCCccCcChh--hc----CCCCCCEEEccCC-ccCcccc-ccCCCCCCEEEccC
Confidence 999999999988778899999999999999998776 33 8999999999996 5677774 89999999999999
Q ss_pred ccCCCCCCC
Q 042541 685 CHRLSALPE 693 (695)
Q Consensus 685 ~~~l~~lP~ 693 (695)
|+ +...|.
T Consensus 227 N~-i~~~~~ 234 (308)
T 1h6u_A 227 QT-ITNQPV 234 (308)
T ss_dssp EE-EECCCE
T ss_pred Ce-eecCCe
Confidence 76 666553
No 77
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.23 E-value=2.9e-11 Score=128.55 Aligned_cols=128 Identities=14% Similarity=0.072 Sum_probs=69.2
Q ss_pred CCCceEEEEEEccCccccCChhhcCCCCCcEEEEcccCCCCcccCcccccccCCCCcEEEeccCCCCCcc-c-ccccccc
Q 042541 548 QGPEVKVVVLNIRTKKYVLPDFLQKMDELKVLIVTNYGFSPAELNNFRVLSALSKLKKIRLEHVSLPNSL-A-TVRMNHL 625 (695)
Q Consensus 548 ~~~~l~~L~l~~~~~~~~~p~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~lp-~-i~~l~~L 625 (695)
.+++|+.|.++.+......|..+..+++|++|++++|.+... .+..++.+++|++|++++|.+..+| . ++++++|
T Consensus 67 ~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~---~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L 143 (390)
T 3o6n_A 67 SFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYL---PPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKL 143 (390)
T ss_dssp HCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCC---CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred ccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcC---CHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCC
Confidence 345566666655544444444566666666666666544211 1112455666666666666666665 3 3566666
Q ss_pred cEEeeccccCCcccccchhhhcccCCCccEEecccccccccCchhhcCCCCCceeecccc
Q 042541 626 QKVSLVMCNVGQVFRNSTFRISDAFPNLLEMDIDYCNDLIELPDGLCDIVSMEKLRITNC 685 (695)
Q Consensus 626 ~~L~l~~~~i~~~~~~~~~~l~~~l~~L~~L~l~~c~~l~~lP~~i~~L~~L~~L~l~~~ 685 (695)
++|++++|.++.+++..+. .+++|++|++++| .+..+| ++.+++|++|++++|
T Consensus 144 ~~L~L~~n~l~~~~~~~~~----~l~~L~~L~l~~n-~l~~~~--~~~l~~L~~L~l~~n 196 (390)
T 3o6n_A 144 TTLSMSNNNLERIEDDTFQ----ATTSLQNLQLSSN-RLTHVD--LSLIPSLFHANVSYN 196 (390)
T ss_dssp CEEECCSSCCCBCCTTTTS----SCTTCCEEECCSS-CCSBCC--GGGCTTCSEEECCSS
T ss_pred cEEECCCCccCccChhhcc----CCCCCCEEECCCC-cCCccc--cccccccceeecccc
Confidence 6666666666665555444 5666666666654 234443 344455555555443
No 78
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.22 E-value=1.6e-11 Score=134.23 Aligned_cols=151 Identities=10% Similarity=0.035 Sum_probs=118.1
Q ss_pred ccceEEeeecCCcccCCCCCCCCCceEEEEEEccCccccCChhhcCCCCCcEEEEcccCCCCcccCccccc-ccCCCCcE
Q 042541 527 NNASLLSISTDETFSSNWPDMQGPEVKVVVLNIRTKKYVLPDFLQKMDELKVLIVTNYGFSPAELNNFRVL-SALSKLKK 605 (695)
Q Consensus 527 ~~~r~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~p~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~l-~~l~~L~~ 605 (695)
...++|.+.++..... ....+++|+.|.++.|......|..++.+++|++|++++|.+.... +..+ +.+++|++
T Consensus 99 ~~L~~L~L~~N~l~~~--~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~---~~~l~~~l~~L~~ 173 (487)
T 3oja_A 99 PSIETLHAANNNISRV--SCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVN---FAELAASSDTLEH 173 (487)
T ss_dssp TTCCEEECCSSCCCCE--EECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEE---GGGGGGGTTTCCE
T ss_pred CCcCEEECcCCcCCCC--CccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcC---hHHHhhhCCcccE
Confidence 3455666654432211 1124688999999888877777888899999999999998775322 2224 37899999
Q ss_pred EEeccCCCCCcccccccccccEEeeccccCCcccccchhhhcccCCCccEEecccccccccCchhhcCCCCCceeecccc
Q 042541 606 IRLEHVSLPNSLATVRMNHLQKVSLVMCNVGQVFRNSTFRISDAFPNLLEMDIDYCNDLIELPDGLCDIVSMEKLRITNC 685 (695)
Q Consensus 606 L~L~~~~l~~lp~i~~l~~L~~L~l~~~~i~~~~~~~~~~l~~~l~~L~~L~l~~c~~l~~lP~~i~~L~~L~~L~l~~~ 685 (695)
|+|++|.++.+|....+++|++|+|++|.++.+|+.+. .+++|+.|++++| .+..+|..++.+++|+.|++++|
T Consensus 174 L~Ls~N~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~-----~l~~L~~L~Ls~N-~l~~lp~~l~~l~~L~~L~l~~N 247 (487)
T 3oja_A 174 LNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQ-----SAAGVTWISLRNN-KLVLIEKALRFSQNLEHFDLRGN 247 (487)
T ss_dssp EECTTSCCCEEECCCCCTTCCEEECCSSCCCEECGGGG-----GGTTCSEEECTTS-CCCEECTTCCCCTTCCEEECTTC
T ss_pred EecCCCccccccccccCCCCCEEECCCCCCCCCCHhHc-----CCCCccEEEecCC-cCcccchhhccCCCCCEEEcCCC
Confidence 99999999988844569999999999999999888754 7999999999996 56789999999999999999998
Q ss_pred cCC
Q 042541 686 HRL 688 (695)
Q Consensus 686 ~~l 688 (695)
+..
T Consensus 248 ~l~ 250 (487)
T 3oja_A 248 GFH 250 (487)
T ss_dssp CBC
T ss_pred CCc
Confidence 743
No 79
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.22 E-value=8.5e-11 Score=121.98 Aligned_cols=160 Identities=14% Similarity=0.196 Sum_probs=111.5
Q ss_pred CccceEEeeecCCcccCCCCCCCCCceEEEEEEccCccccCChhhcCCCCCcEEEEcccCCCC-----cccCcc--cc--
Q 042541 526 PNNASLLSISTDETFSSNWPDMQGPEVKVVVLNIRTKKYVLPDFLQKMDELKVLIVTNYGFSP-----AELNNF--RV-- 596 (695)
Q Consensus 526 ~~~~r~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~p~~~~~l~~Lr~L~l~~~~~~~-----~~~~~~--~~-- 596 (695)
....++|.+..+... ..+. .-.++|+.|.++.+......+..+..+++|++|++++|.+.. ..+..+ ..
T Consensus 101 l~~L~~L~L~~n~l~-~l~~-~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~ 178 (332)
T 2ft3_A 101 LRKLQKLYISKNHLV-EIPP-NLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLR 178 (332)
T ss_dssp CTTCCEEECCSSCCC-SCCS-SCCTTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCB
T ss_pred cCCCCEEECCCCcCC-ccCc-cccccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCCccCEEE
Confidence 345666666554322 1111 122677777777765554445567788888888888775521 100000 00
Q ss_pred -----c-----ccCCCCcEEEeccCCCCCcc--cccccccccEEeeccccCCcccccchhhhcccCCCccEEeccccccc
Q 042541 597 -----L-----SALSKLKKIRLEHVSLPNSL--ATVRMNHLQKVSLVMCNVGQVFRNSTFRISDAFPNLLEMDIDYCNDL 664 (695)
Q Consensus 597 -----l-----~~l~~L~~L~L~~~~l~~lp--~i~~l~~L~~L~l~~~~i~~~~~~~~~~l~~~l~~L~~L~l~~c~~l 664 (695)
+ .-.++|++|++++|.+..++ .+.++++|++|++++|.++.+++..+. .+++|+.|++++| .+
T Consensus 179 l~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~----~l~~L~~L~L~~N-~l 253 (332)
T 2ft3_A 179 ISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLS----FLPTLRELHLDNN-KL 253 (332)
T ss_dssp CCSSBCSSCCSSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGG----GCTTCCEEECCSS-CC
T ss_pred CcCCCCCccCccccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhh----CCCCCCEEECCCC-cC
Confidence 0 01147888888888888665 788899999999999999988887666 8999999999986 57
Q ss_pred ccCchhhcCCCCCceeecccccCCCCCCC
Q 042541 665 IELPDGLCDIVSMEKLRITNCHRLSALPE 693 (695)
Q Consensus 665 ~~lP~~i~~L~~L~~L~l~~~~~l~~lP~ 693 (695)
..+|.+++.+++|++|++++|. ++.+|.
T Consensus 254 ~~lp~~l~~l~~L~~L~l~~N~-l~~~~~ 281 (332)
T 2ft3_A 254 SRVPAGLPDLKLLQVVYLHTNN-ITKVGV 281 (332)
T ss_dssp CBCCTTGGGCTTCCEEECCSSC-CCBCCT
T ss_pred eecChhhhcCccCCEEECCCCC-CCccCh
Confidence 7999999999999999999965 777765
No 80
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.22 E-value=1.9e-11 Score=126.07 Aligned_cols=151 Identities=9% Similarity=0.027 Sum_probs=112.7
Q ss_pred ccceEEeeecCCcccCCCCCCCCCceEEEEEEccCccccCChhhcCCCCCcEEEEcccCCCCcccCcccccccCCCCcEE
Q 042541 527 NNASLLSISTDETFSSNWPDMQGPEVKVVVLNIRTKKYVLPDFLQKMDELKVLIVTNYGFSPAELNNFRVLSALSKLKKI 606 (695)
Q Consensus 527 ~~~r~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~p~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L 606 (695)
...+++.+..+..... ....+++|+.|.++.+......|..+..+++|++|++++|.+....... ....+++|++|
T Consensus 99 ~~L~~L~l~~n~l~~~--~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~--~~~~l~~L~~L 174 (317)
T 3o53_A 99 PSIETLHAANNNISRV--SCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAE--LAASSDTLEHL 174 (317)
T ss_dssp TTCCEEECCSSCCSEE--EECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGG--GGGGTTTCCEE
T ss_pred CCcCEEECCCCccCCc--CccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHH--HhhccCcCCEE
Confidence 3455565554432111 1124678899988888766666667888899999999988764321111 13478899999
Q ss_pred EeccCCCCCcccccccccccEEeeccccCCcccccchhhhcccCCCccEEecccccccccCchhhcCCCCCceeeccccc
Q 042541 607 RLEHVSLPNSLATVRMNHLQKVSLVMCNVGQVFRNSTFRISDAFPNLLEMDIDYCNDLIELPDGLCDIVSMEKLRITNCH 686 (695)
Q Consensus 607 ~L~~~~l~~lp~i~~l~~L~~L~l~~~~i~~~~~~~~~~l~~~l~~L~~L~l~~c~~l~~lP~~i~~L~~L~~L~l~~~~ 686 (695)
++++|.++.+|....+++|++|+|++|.++.+++.+. .+++|+.|++++| .+..+|..+..+++|+.|++++|+
T Consensus 175 ~L~~N~l~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~-----~l~~L~~L~L~~N-~l~~l~~~~~~l~~L~~L~l~~N~ 248 (317)
T 3o53_A 175 NLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQ-----SAAGVTWISLRNN-KLVLIEKALRFSQNLEHFDLRGNG 248 (317)
T ss_dssp ECTTSCCCEEECCCCCTTCCEEECCSSCCCEECGGGG-----GGTTCSEEECTTS-CCCEECTTCCCCTTCCEEECTTCC
T ss_pred ECCCCcCcccccccccccCCEEECCCCcCCcchhhhc-----ccCcccEEECcCC-cccchhhHhhcCCCCCEEEccCCC
Confidence 9999999888844458899999999999998888754 7899999999986 577899889999999999999977
Q ss_pred C
Q 042541 687 R 687 (695)
Q Consensus 687 ~ 687 (695)
.
T Consensus 249 ~ 249 (317)
T 3o53_A 249 F 249 (317)
T ss_dssp C
T ss_pred c
Confidence 3
No 81
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.22 E-value=5.3e-11 Score=132.99 Aligned_cols=150 Identities=17% Similarity=0.210 Sum_probs=119.0
Q ss_pred CccceEEeeecCCcccCCCCCCCCCceEEEEEEccCccccCChhhcCCCCCcEEEEcccCCCCcccCcccccccCCCCcE
Q 042541 526 PNNASLLSISTDETFSSNWPDMQGPEVKVVVLNIRTKKYVLPDFLQKMDELKVLIVTNYGFSPAELNNFRVLSALSKLKK 605 (695)
Q Consensus 526 ~~~~r~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~p~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~ 605 (695)
....+.|.+..+.... ......+++|+.|.|+.|.... +| .+..+++|+.|+|++|.+.. ++.+..|++|+.
T Consensus 64 l~~L~~L~Ls~N~l~~-~~~l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L~Ls~N~l~~-----l~~l~~l~~L~~ 135 (605)
T 1m9s_A 64 LPNVTKLFLNGNKLTD-IKPLTNLKNLGWLFLDENKIKD-LS-SLKDLKKLKSLSLEHNGISD-----INGLVHLPQLES 135 (605)
T ss_dssp CTTCCEEECTTSCCCC-CGGGGGCTTCCEEECCSSCCCC-CT-TSTTCTTCCEEECTTSCCCC-----CGGGGGCTTCSE
T ss_pred CCCCCEEEeeCCCCCC-ChhhccCCCCCEEECcCCCCCC-Ch-hhccCCCCCEEEecCCCCCC-----CccccCCCccCE
Confidence 3567777776554322 2223478899999998885443 33 68899999999999987742 345889999999
Q ss_pred EEeccCCCCCcccccccccccEEeeccccCCcccccchhhhcccCCCccEEecccccccccCchhhcCCCCCceeecccc
Q 042541 606 IRLEHVSLPNSLATVRMNHLQKVSLVMCNVGQVFRNSTFRISDAFPNLLEMDIDYCNDLIELPDGLCDIVSMEKLRITNC 685 (695)
Q Consensus 606 L~L~~~~l~~lp~i~~l~~L~~L~l~~~~i~~~~~~~~~~l~~~l~~L~~L~l~~c~~l~~lP~~i~~L~~L~~L~l~~~ 685 (695)
|+|++|.+..++.++.|++|+.|+|++|.+..+++ +. .+++|+.|+|++| .+..+| .+..|++|+.|+|++|
T Consensus 136 L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~~~~--l~----~l~~L~~L~Ls~N-~i~~l~-~l~~l~~L~~L~L~~N 207 (605)
T 1m9s_A 136 LYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP--LA----GLTKLQNLYLSKN-HISDLR-ALAGLKNLDVLELFSQ 207 (605)
T ss_dssp EECCSSCCCCCGGGGSCTTCSEEECCSSCCCCCGG--GT----TCTTCCEEECCSS-CCCBCG-GGTTCTTCSEEECCSE
T ss_pred EECCCCccCCchhhcccCCCCEEECcCCcCCCchh--hc----cCCCCCEEECcCC-CCCCCh-HHccCCCCCEEEccCC
Confidence 99999999988888899999999999999999877 33 8999999999997 567776 5999999999999998
Q ss_pred cCCCCCC
Q 042541 686 HRLSALP 692 (695)
Q Consensus 686 ~~l~~lP 692 (695)
+ +...|
T Consensus 208 ~-l~~~p 213 (605)
T 1m9s_A 208 E-CLNKP 213 (605)
T ss_dssp E-EECCC
T ss_pred c-CcCCc
Confidence 7 44444
No 82
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.21 E-value=3.9e-11 Score=134.07 Aligned_cols=130 Identities=19% Similarity=0.303 Sum_probs=109.1
Q ss_pred CCCCceEEEEEEccCccccCChhhcCCCCCcEEEEcccCCCCcccCcccccccCCCCcEEEeccCCCCCccccccccccc
Q 042541 547 MQGPEVKVVVLNIRTKKYVLPDFLQKMDELKVLIVTNYGFSPAELNNFRVLSALSKLKKIRLEHVSLPNSLATVRMNHLQ 626 (695)
Q Consensus 547 ~~~~~l~~L~l~~~~~~~~~p~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~lp~i~~l~~L~ 626 (695)
..+++|+.|.|+.+......| +..+++|+.|+|++|.+.. ++.++.|++|++|+|++|.+..+|.++.|++|+
T Consensus 62 ~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-----l~~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~ 134 (605)
T 1m9s_A 62 QYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-----LSSLKDLKKLKSLSLEHNGISDINGLVHLPQLE 134 (605)
T ss_dssp GGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-----CTTSTTCTTCCEEECTTSCCCCCGGGGGCTTCS
T ss_pred ccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-----ChhhccCCCCCEEEecCCCCCCCccccCCCccC
Confidence 368999999998886554333 8899999999999987742 335889999999999999999888888999999
Q ss_pred EEeeccccCCcccccchhhhcccCCCccEEecccccccccCchhhcCCCCCceeecccccCCCCCC
Q 042541 627 KVSLVMCNVGQVFRNSTFRISDAFPNLLEMDIDYCNDLIELPDGLCDIVSMEKLRITNCHRLSALP 692 (695)
Q Consensus 627 ~L~l~~~~i~~~~~~~~~~l~~~l~~L~~L~l~~c~~l~~lP~~i~~L~~L~~L~l~~~~~l~~lP 692 (695)
.|+|++|.++.+ +.+. .|++|+.|+|++|. +..+|. +..+++|++|+|++|. +..+|
T Consensus 135 ~L~Ls~N~l~~l-~~l~-----~l~~L~~L~Ls~N~-l~~~~~-l~~l~~L~~L~Ls~N~-i~~l~ 191 (605)
T 1m9s_A 135 SLYLGNNKITDI-TVLS-----RLTKLDTLSLEDNQ-ISDIVP-LAGLTKLQNLYLSKNH-ISDLR 191 (605)
T ss_dssp EEECCSSCCCCC-GGGG-----SCTTCSEEECCSSC-CCCCGG-GTTCTTCCEEECCSSC-CCBCG
T ss_pred EEECCCCccCCc-hhhc-----ccCCCCEEECcCCc-CCCchh-hccCCCCCEEECcCCC-CCCCh
Confidence 999999999987 3333 89999999999974 666666 9999999999999976 66654
No 83
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.21 E-value=3.1e-11 Score=112.79 Aligned_cols=114 Identities=16% Similarity=0.155 Sum_probs=97.4
Q ss_pred hhcCCCCCcEEEEcccCCCCcccCcccccccCC-CCcEEEeccCCCCCcccccccccccEEeeccccCCcccccchhhhc
Q 042541 569 FLQKMDELKVLIVTNYGFSPAELNNFRVLSALS-KLKKIRLEHVSLPNSLATVRMNHLQKVSLVMCNVGQVFRNSTFRIS 647 (695)
Q Consensus 569 ~~~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~-~L~~L~L~~~~l~~lp~i~~l~~L~~L~l~~~~i~~~~~~~~~~l~ 647 (695)
.+..+.+|+.|++++|.+. .+ +.+..+. +|++|++++|.++.++.++.+++|++|++++|.++.+|+..+.
T Consensus 14 ~~~~~~~L~~L~l~~n~l~--~i---~~~~~~~~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~--- 85 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIP--VI---ENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQ--- 85 (176)
T ss_dssp EEECTTSCEEEECTTSCCC--SC---CCGGGGTTCCSEEECCSSCCCEECCCCCCSSCCEEECCSSCCCEECSCHHH---
T ss_pred hcCCcCCceEEEeeCCCCc--hh---HHhhhcCCCCCEEECCCCCCCcccccccCCCCCEEECCCCcccccCcchhh---
Confidence 3567889999999998774 23 3355655 9999999999999877888999999999999999999888765
Q ss_pred ccCCCccEEecccccccccCch--hhcCCCCCceeecccccCCCCCCC
Q 042541 648 DAFPNLLEMDIDYCNDLIELPD--GLCDIVSMEKLRITNCHRLSALPE 693 (695)
Q Consensus 648 ~~l~~L~~L~l~~c~~l~~lP~--~i~~L~~L~~L~l~~~~~l~~lP~ 693 (695)
.+++|++|++++| .+..+|. .++.+++|++|++++|+ +..+|.
T Consensus 86 -~l~~L~~L~L~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~-i~~~~~ 130 (176)
T 1a9n_A 86 -ALPDLTELILTNN-SLVELGDLDPLASLKSLTYLCILRNP-VTNKKH 130 (176)
T ss_dssp -HCTTCCEEECCSC-CCCCGGGGGGGGGCTTCCEEECCSSG-GGGSTT
T ss_pred -cCCCCCEEECCCC-cCCcchhhHhhhcCCCCCEEEecCCC-CCCcHh
Confidence 8999999999996 5788997 89999999999999977 667765
No 84
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.21 E-value=2e-11 Score=133.46 Aligned_cols=90 Identities=12% Similarity=0.164 Sum_probs=65.8
Q ss_pred cccCCCCcEEEeccCCCCC-cc-ccc-ccccccEEeeccccCCcccccchhhhcccCCCccEEecccccccccCchhhcC
Q 042541 597 LSALSKLKKIRLEHVSLPN-SL-ATV-RMNHLQKVSLVMCNVGQVFRNSTFRISDAFPNLLEMDIDYCNDLIELPDGLCD 673 (695)
Q Consensus 597 l~~l~~L~~L~L~~~~l~~-lp-~i~-~l~~L~~L~l~~~~i~~~~~~~~~~l~~~l~~L~~L~l~~c~~l~~lP~~i~~ 673 (695)
++.+++|++|+|++|.++. .| .+. .+++|++|+|++|.++.+++.. .+++|++|+|++| .+..+|..++.
T Consensus 140 ~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~~~------~l~~L~~L~Ls~N-~l~~~~~~~~~ 212 (487)
T 3oja_A 140 EGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQV------VFAKLKTLDLSSN-KLAFMGPEFQS 212 (487)
T ss_dssp GGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECCC------CCTTCCEEECCSS-CCCEECGGGGG
T ss_pred hcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccccccc------cCCCCCEEECCCC-CCCCCCHhHcC
Confidence 5566677777777777664 33 444 5677777777777766654322 5888999999986 57788888999
Q ss_pred CCCCceeecccccCCCCCCCC
Q 042541 674 IVSMEKLRITNCHRLSALPEG 694 (695)
Q Consensus 674 L~~L~~L~l~~~~~l~~lP~~ 694 (695)
+++|+.|++++|. +..+|..
T Consensus 213 l~~L~~L~Ls~N~-l~~lp~~ 232 (487)
T 3oja_A 213 AAGVTWISLRNNK-LVLIEKA 232 (487)
T ss_dssp GTTCSEEECTTSC-CCEECTT
T ss_pred CCCccEEEecCCc-Ccccchh
Confidence 9999999999966 7777765
No 85
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.21 E-value=8.1e-11 Score=114.26 Aligned_cols=120 Identities=13% Similarity=0.162 Sum_probs=97.6
Q ss_pred ccCChhhcCCCCCcEEEEcccCCCCcccCcccccccCCCCcEEEeccCCCCCcc--cccccccccEEeeccccCCccccc
Q 042541 564 YVLPDFLQKMDELKVLIVTNYGFSPAELNNFRVLSALSKLKKIRLEHVSLPNSL--ATVRMNHLQKVSLVMCNVGQVFRN 641 (695)
Q Consensus 564 ~~~p~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~lp--~i~~l~~L~~L~l~~~~i~~~~~~ 641 (695)
..+|..+ ...+++|++++|.+.. +.....+..+++|++|+|++|.++.++ .++++++|++|+|++|.++.+++.
T Consensus 24 ~~iP~~~--~~~~~~L~L~~N~l~~--~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 99 (220)
T 2v70_A 24 NKIPEHI--PQYTAELRLNNNEFTV--LEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHK 99 (220)
T ss_dssp SSCCSCC--CTTCSEEECCSSCCCE--ECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGG
T ss_pred ccCccCC--CCCCCEEEcCCCcCCc--cCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHh
Confidence 3466544 3457899999987742 222223789999999999999999777 799999999999999999999998
Q ss_pred chhhhcccCCCccEEecccccccccCchhhcCCCCCceeecccccCCCCCC
Q 042541 642 STFRISDAFPNLLEMDIDYCNDLIELPDGLCDIVSMEKLRITNCHRLSALP 692 (695)
Q Consensus 642 ~~~~l~~~l~~L~~L~l~~c~~l~~lP~~i~~L~~L~~L~l~~~~~l~~lP 692 (695)
.+. .+++|++|+|++|......|..+..+++|++|+|++|. +..++
T Consensus 100 ~~~----~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~ 145 (220)
T 2v70_A 100 MFK----GLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQ-ITTVA 145 (220)
T ss_dssp GGT----TCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSC-CCCBC
T ss_pred Hhc----CCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCc-CCEEC
Confidence 776 89999999999975444447789999999999999976 66663
No 86
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.20 E-value=2e-11 Score=125.51 Aligned_cols=151 Identities=19% Similarity=0.196 Sum_probs=73.3
Q ss_pred ccceEEeeecCCcccCCCCC-CCCCceEEEEEEccCcccc--CChhh--cCCCCCcEEEEcccCCCCcccCcccccccCC
Q 042541 527 NNASLLSISTDETFSSNWPD-MQGPEVKVVVLNIRTKKYV--LPDFL--QKMDELKVLIVTNYGFSPAELNNFRVLSALS 601 (695)
Q Consensus 527 ~~~r~l~~~~~~~~~~~~~~-~~~~~l~~L~l~~~~~~~~--~p~~~--~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~ 601 (695)
...++|.+..+......+.. ..+++|+.|.++.|...+. +|..+ ..+++|++|++++|.+....-.....+..++
T Consensus 149 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~ 228 (312)
T 1wwl_A 149 PGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARV 228 (312)
T ss_dssp TTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTC
T ss_pred CCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCC
Confidence 34555555544332222111 2455666666655543322 22222 5556666666666554210000001123455
Q ss_pred CCcEEEeccCCCCC-cc--cccccccccEEeeccccCCcccccchhhhcccCCCccEEecccccccccCchhhcCCCCCc
Q 042541 602 KLKKIRLEHVSLPN-SL--ATVRMNHLQKVSLVMCNVGQVFRNSTFRISDAFPNLLEMDIDYCNDLIELPDGLCDIVSME 678 (695)
Q Consensus 602 ~L~~L~L~~~~l~~-lp--~i~~l~~L~~L~l~~~~i~~~~~~~~~~l~~~l~~L~~L~l~~c~~l~~lP~~i~~L~~L~ 678 (695)
+|++|++++|.+.. .| .+..+++|++|+|++|.++.+|... . ++|++|++++| .+..+|. +..+++|+
T Consensus 229 ~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~------~-~~L~~L~Ls~N-~l~~~p~-~~~l~~L~ 299 (312)
T 1wwl_A 229 QLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGL------P-AKLSVLDLSYN-RLDRNPS-PDELPQVG 299 (312)
T ss_dssp CCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCCSSC------C-SEEEEEECCSS-CCCSCCC-TTTSCEEE
T ss_pred CCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChhhhhc------c-CCceEEECCCC-CCCCChh-HhhCCCCC
Confidence 66666666666553 22 3344556666666666665444322 2 45666666654 3455554 56666666
Q ss_pred eeeccccc
Q 042541 679 KLRITNCH 686 (695)
Q Consensus 679 ~L~l~~~~ 686 (695)
+|++++|+
T Consensus 300 ~L~L~~N~ 307 (312)
T 1wwl_A 300 NLSLKGNP 307 (312)
T ss_dssp EEECTTCT
T ss_pred EEeccCCC
Confidence 66666644
No 87
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.20 E-value=3.6e-11 Score=130.62 Aligned_cols=159 Identities=14% Similarity=0.200 Sum_probs=101.2
Q ss_pred CccceEEeeecCCcccCCCC-CCCCCceEEEEEEccCccccC-ChhhcCCCCCcEEEEcccCCCCcccCcccccccCCCC
Q 042541 526 PNNASLLSISTDETFSSNWP-DMQGPEVKVVVLNIRTKKYVL-PDFLQKMDELKVLIVTNYGFSPAELNNFRVLSALSKL 603 (695)
Q Consensus 526 ~~~~r~l~~~~~~~~~~~~~-~~~~~~l~~L~l~~~~~~~~~-p~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L 603 (695)
+...++|.+..+......+. ...+++|++|.++.+.....+ |..|.++++|++|++++|.+... .+..++.+++|
T Consensus 29 ~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~---~~~~~~~l~~L 105 (455)
T 3v47_A 29 PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQL---ETGAFNGLANL 105 (455)
T ss_dssp CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEE---CTTTTTTCTTC
T ss_pred CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCcc---ChhhccCcccC
Confidence 35667777766543322222 235677777777777554444 44677777777777777765321 12236677777
Q ss_pred cEEEeccCCCCC-cc-c--ccccccccEEeeccccCCcccccc-hhhhcccCCCccEEecccccccccCchhhcCC--CC
Q 042541 604 KKIRLEHVSLPN-SL-A--TVRMNHLQKVSLVMCNVGQVFRNS-TFRISDAFPNLLEMDIDYCNDLIELPDGLCDI--VS 676 (695)
Q Consensus 604 ~~L~L~~~~l~~-lp-~--i~~l~~L~~L~l~~~~i~~~~~~~-~~~l~~~l~~L~~L~l~~c~~l~~lP~~i~~L--~~ 676 (695)
++|++++|.+.. +| . ++++++|++|+|++|.++..+|.. +. .+++|++|++++|......|..++.+ .+
T Consensus 106 ~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~----~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~ 181 (455)
T 3v47_A 106 EVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFL----NMRRFHVLDLTFNKVKSICEEDLLNFQGKH 181 (455)
T ss_dssp CEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGG----GCTTCCEEECTTCCBSCCCTTTSGGGTTCE
T ss_pred CEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccC----CCCcccEEeCCCCcccccChhhhhcccccc
Confidence 777777777764 34 3 777777777887777777765543 44 67777777777765544555566655 57
Q ss_pred CceeecccccCCCCCC
Q 042541 677 MEKLRITNCHRLSALP 692 (695)
Q Consensus 677 L~~L~l~~~~~l~~lP 692 (695)
|+.|++++|. +..+|
T Consensus 182 L~~L~l~~n~-l~~~~ 196 (455)
T 3v47_A 182 FTLLRLSSIT-LQDMN 196 (455)
T ss_dssp EEEEECTTCB-CTTCS
T ss_pred ccccccccCc-ccccc
Confidence 7777777755 55544
No 88
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.20 E-value=4.4e-11 Score=125.62 Aligned_cols=157 Identities=17% Similarity=0.173 Sum_probs=122.4
Q ss_pred CCccceEEeeecCCcccCCCCCC--CCCceEEEEEEccCccccCChhhcCCCCCcEEEEcccCCCCcccCcccccccCCC
Q 042541 525 HPNNASLLSISTDETFSSNWPDM--QGPEVKVVVLNIRTKKYVLPDFLQKMDELKVLIVTNYGFSPAELNNFRVLSALSK 602 (695)
Q Consensus 525 ~~~~~r~l~~~~~~~~~~~~~~~--~~~~l~~L~l~~~~~~~~~p~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~ 602 (695)
.+...++|.+..+.........+ .+++|+.|.|+.+......|..|.++++|++|+|++|.+.. +. ...+..+++
T Consensus 37 ~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~--~~-~~~~~~l~~ 113 (361)
T 2xot_A 37 LPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHT--LD-EFLFSDLQA 113 (361)
T ss_dssp CCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCE--EC-TTTTTTCTT
T ss_pred CCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCc--CC-HHHhCCCcC
Confidence 34467788887765433222222 78999999999887777677789999999999999987742 11 123788999
Q ss_pred CcEEEeccCCCCCcc--cccccccccEEeeccccCCcccccchhhhcccCCCccEEecccccccccCch-hhcCCCC--C
Q 042541 603 LKKIRLEHVSLPNSL--ATVRMNHLQKVSLVMCNVGQVFRNSTFRISDAFPNLLEMDIDYCNDLIELPD-GLCDIVS--M 677 (695)
Q Consensus 603 L~~L~L~~~~l~~lp--~i~~l~~L~~L~l~~~~i~~~~~~~~~~l~~~l~~L~~L~l~~c~~l~~lP~-~i~~L~~--L 677 (695)
|++|+|++|.+..++ .+.++++|++|+|++|.++.+|+..+..+. .+++|+.|+|++| .+..+|. .+..+++ |
T Consensus 114 L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~-~l~~L~~L~L~~N-~l~~l~~~~~~~l~~~~l 191 (361)
T 2xot_A 114 LEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGN-KLPKLMLLDLSSN-KLKKLPLTDLQKLPAWVK 191 (361)
T ss_dssp CCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC-----CTTCCEEECCSS-CCCCCCHHHHHHSCHHHH
T ss_pred CCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcc-cCCcCCEEECCCC-CCCccCHHHhhhccHhhc
Confidence 999999999999774 899999999999999999999887752111 6999999999996 5778884 5788887 4
Q ss_pred ceeeccccc
Q 042541 678 EKLRITNCH 686 (695)
Q Consensus 678 ~~L~l~~~~ 686 (695)
+.|+|++|+
T Consensus 192 ~~l~l~~N~ 200 (361)
T 2xot_A 192 NGLYLHNNP 200 (361)
T ss_dssp TTEECCSSC
T ss_pred ceEEecCCC
Confidence 899999976
No 89
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.19 E-value=5.7e-11 Score=129.06 Aligned_cols=137 Identities=19% Similarity=0.260 Sum_probs=116.6
Q ss_pred CCCceEEEEEEccCccccCChhhcCCCCCcEEEEcccCCCCcccCcccccccCCCCcEEEeccCCCCCcc--cccccccc
Q 042541 548 QGPEVKVVVLNIRTKKYVLPDFLQKMDELKVLIVTNYGFSPAELNNFRVLSALSKLKKIRLEHVSLPNSL--ATVRMNHL 625 (695)
Q Consensus 548 ~~~~l~~L~l~~~~~~~~~p~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~lp--~i~~l~~L 625 (695)
.+++|+.|.++.+......|..+..+++|++|++++|.+.... +..++.+++|++|+|++|.+..++ .++++++|
T Consensus 273 ~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~---~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 349 (455)
T 3v47_A 273 EASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKID---DNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKL 349 (455)
T ss_dssp TTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEEC---TTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTC
T ss_pred cccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccC---hhHhcCcccCCEEECCCCccCCcChhHhcCcccC
Confidence 4578999999998888888889999999999999998774221 223788999999999999999764 88999999
Q ss_pred cEEeeccccCCcccccchhhhcccCCCccEEecccccccccCchh-hcCCCCCceeecccccCCCCCC
Q 042541 626 QKVSLVMCNVGQVFRNSTFRISDAFPNLLEMDIDYCNDLIELPDG-LCDIVSMEKLRITNCHRLSALP 692 (695)
Q Consensus 626 ~~L~l~~~~i~~~~~~~~~~l~~~l~~L~~L~l~~c~~l~~lP~~-i~~L~~L~~L~l~~~~~l~~lP 692 (695)
++|+|++|.++.+++..+. .+++|++|++++| .+..+|.. +..+++|+.|++++|+.....|
T Consensus 350 ~~L~Ls~N~l~~~~~~~~~----~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 350 EVLDLSYNHIRALGDQSFL----GLPNLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp CEEECCSSCCCEECTTTTT----TCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred CEEECCCCcccccChhhcc----ccccccEEECCCC-ccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 9999999999999887766 8999999999996 56777765 6899999999999998666665
No 90
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.19 E-value=6.4e-11 Score=132.64 Aligned_cols=161 Identities=16% Similarity=0.111 Sum_probs=108.0
Q ss_pred CCccceEEeeecCCcccCCC-CCCCCCceEEEEEEccCccccCChhhcCCCCCcEEEEcccCCCCcccCcccccccCCCC
Q 042541 525 HPNNASLLSISTDETFSSNW-PDMQGPEVKVVVLNIRTKKYVLPDFLQKMDELKVLIVTNYGFSPAELNNFRVLSALSKL 603 (695)
Q Consensus 525 ~~~~~r~l~~~~~~~~~~~~-~~~~~~~l~~L~l~~~~~~~~~p~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L 603 (695)
.+..++++.+..+....... ....+++|++|.++.+......|..|.++++|++|++++|.+... ....++.+++|
T Consensus 26 l~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~---~~~~~~~l~~L 102 (570)
T 2z63_A 26 LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSL---ALGAFSGLSSL 102 (570)
T ss_dssp SCSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEE---CTTTTTTCTTC
T ss_pred ccccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCcc---CHhhhcCcccc
Confidence 34567777776654322211 223677888888877765555566788888888888888765321 11236778888
Q ss_pred cEEEeccCCCCCcc--cccccccccEEeeccccCCccc-ccchhhhcccCCCccEEecccccccccCchhhcCCCCC---
Q 042541 604 KKIRLEHVSLPNSL--ATVRMNHLQKVSLVMCNVGQVF-RNSTFRISDAFPNLLEMDIDYCNDLIELPDGLCDIVSM--- 677 (695)
Q Consensus 604 ~~L~L~~~~l~~lp--~i~~l~~L~~L~l~~~~i~~~~-~~~~~~l~~~l~~L~~L~l~~c~~l~~lP~~i~~L~~L--- 677 (695)
++|++++|.+..+| .++++++|++|++++|.++.+. |..+. .+++|++|++++|......|..++.+++|
T Consensus 103 ~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~----~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~ 178 (570)
T 2z63_A 103 QKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFS----NLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLL 178 (570)
T ss_dssp CEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGG----GCTTCCEEECTTSCCCEECGGGGHHHHTCTTC
T ss_pred ccccccccccccCCCccccccccccEEecCCCccceecChhhhc----ccCCCCEEeCcCCccceecHHHccchhccchh
Confidence 88888888888776 6778888888888888877632 33343 78888888888865433345567777777
Q ss_pred -ceeecccccCCCCCCC
Q 042541 678 -EKLRITNCHRLSALPE 693 (695)
Q Consensus 678 -~~L~l~~~~~l~~lP~ 693 (695)
+.|++++|. +..+|+
T Consensus 179 ~~~L~l~~n~-l~~~~~ 194 (570)
T 2z63_A 179 NLSLDLSLNP-MNFIQP 194 (570)
T ss_dssp CCEEECTTCC-CCEECT
T ss_pred hhhcccCCCC-ceecCH
Confidence 788888865 554443
No 91
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.18 E-value=1.6e-10 Score=119.74 Aligned_cols=151 Identities=13% Similarity=0.188 Sum_probs=91.4
Q ss_pred ccceEEeeecCCcccCCC-CCCCCCceEEEEEEccCccccCChhhcCCCCCcEEEEcccCCCCcccCcccccccCCCCcE
Q 042541 527 NNASLLSISTDETFSSNW-PDMQGPEVKVVVLNIRTKKYVLPDFLQKMDELKVLIVTNYGFSPAELNNFRVLSALSKLKK 605 (695)
Q Consensus 527 ~~~r~l~~~~~~~~~~~~-~~~~~~~l~~L~l~~~~~~~~~p~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~ 605 (695)
...+.+.+..+....... ....+++|+.|.++.+......|..+..+++|++|++++|.+. .++. .-.++|++
T Consensus 52 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~--~l~~----~~~~~L~~ 125 (330)
T 1xku_A 52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK--ELPE----KMPKTLQE 125 (330)
T ss_dssp TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS--BCCS----SCCTTCCE
T ss_pred CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCC--ccCh----hhcccccE
Confidence 455666665543322211 1225667777777666555555667777777777777776553 1111 11256777
Q ss_pred EEeccCCCCCcc--cccccccccEEeeccccCCc--ccccchhhhcccCCCccEEecccccccccCchhhcCCCCCceee
Q 042541 606 IRLEHVSLPNSL--ATVRMNHLQKVSLVMCNVGQ--VFRNSTFRISDAFPNLLEMDIDYCNDLIELPDGLCDIVSMEKLR 681 (695)
Q Consensus 606 L~L~~~~l~~lp--~i~~l~~L~~L~l~~~~i~~--~~~~~~~~l~~~l~~L~~L~l~~c~~l~~lP~~i~~L~~L~~L~ 681 (695)
|++++|.+..++ .++++++|++|++++|.+.. ..+..+. .+++|++|++++| .+..+|..+. ++|++|+
T Consensus 126 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~----~l~~L~~L~l~~n-~l~~l~~~~~--~~L~~L~ 198 (330)
T 1xku_A 126 LRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQ----GMKKLSYIRIADT-NITTIPQGLP--PSLTELH 198 (330)
T ss_dssp EECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGG----GCTTCCEEECCSS-CCCSCCSSCC--TTCSEEE
T ss_pred EECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhcc----CCCCcCEEECCCC-ccccCCcccc--ccCCEEE
Confidence 777777777665 56777777777777776653 3344443 6777777777775 4566776543 6777777
Q ss_pred cccccCCCCC
Q 042541 682 ITNCHRLSAL 691 (695)
Q Consensus 682 l~~~~~l~~l 691 (695)
+++|. +..+
T Consensus 199 l~~n~-l~~~ 207 (330)
T 1xku_A 199 LDGNK-ITKV 207 (330)
T ss_dssp CTTSC-CCEE
T ss_pred CCCCc-CCcc
Confidence 77765 4433
No 92
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.18 E-value=1.3e-10 Score=136.33 Aligned_cols=160 Identities=12% Similarity=0.101 Sum_probs=107.3
Q ss_pred CCccceEEeeecCCcccCCCC-CCCCCceEEEEEEccCccccC-ChhhcCCCCCcEEEEcccCCCCcccCcccccccCCC
Q 042541 525 HPNNASLLSISTDETFSSNWP-DMQGPEVKVVVLNIRTKKYVL-PDFLQKMDELKVLIVTNYGFSPAELNNFRVLSALSK 602 (695)
Q Consensus 525 ~~~~~r~l~~~~~~~~~~~~~-~~~~~~l~~L~l~~~~~~~~~-p~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~ 602 (695)
.+..+++|.+..+......+. ...+++|++|.++.+.....+ |..|.++++|++|+|++|.+... .+..++++++
T Consensus 22 lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~---~p~~~~~l~~ 98 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFL---HPDAFQGLFH 98 (844)
T ss_dssp SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEE---CTTSSCSCSS
T ss_pred CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCccc---CHhHccCCcc
Confidence 456778888876654332222 236788888888887555555 66788888888888888766321 1233677888
Q ss_pred CcEEEeccCCCCC-cc-c--ccccccccEEeeccccCCcccc-cchhhhcccCCCccEEecccccccccCchhhcCC--C
Q 042541 603 LKKIRLEHVSLPN-SL-A--TVRMNHLQKVSLVMCNVGQVFR-NSTFRISDAFPNLLEMDIDYCNDLIELPDGLCDI--V 675 (695)
Q Consensus 603 L~~L~L~~~~l~~-lp-~--i~~l~~L~~L~l~~~~i~~~~~-~~~~~l~~~l~~L~~L~l~~c~~l~~lP~~i~~L--~ 675 (695)
|++|+|++|.+.. +| . ++++++|++|+|++|.++.+++ ..+. .+++|++|++++|......|..++.+ +
T Consensus 99 L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~----~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~ 174 (844)
T 3j0a_A 99 LFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFG----KLNSLKSIDFSSNQIFLVCEHELEPLQGK 174 (844)
T ss_dssp CCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGG----TCSSCCEEEEESSCCCCCCSGGGHHHHHC
T ss_pred cCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHh----hCCCCCEEECCCCcCCeeCHHHcccccCC
Confidence 8888888888773 45 3 7788888888888888777654 3444 78888888888765544555556555 5
Q ss_pred CCceeecccccCCCCC
Q 042541 676 SMEKLRITNCHRLSAL 691 (695)
Q Consensus 676 ~L~~L~l~~~~~l~~l 691 (695)
+|+.|++++|+..+..
T Consensus 175 ~L~~L~L~~n~l~~~~ 190 (844)
T 3j0a_A 175 TLSFFSLAANSLYSRV 190 (844)
T ss_dssp SSCCCEECCSBSCCCC
T ss_pred ccceEECCCCcccccc
Confidence 6666666665543333
No 93
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.18 E-value=7.1e-11 Score=109.39 Aligned_cols=114 Identities=16% Similarity=0.268 Sum_probs=95.8
Q ss_pred CCCCCcEEEEcccCCCCcccCcccccccCCCCcEEEeccCCCCCcccccccccccEEeeccccCCcccccchhhhcccCC
Q 042541 572 KMDELKVLIVTNYGFSPAELNNFRVLSALSKLKKIRLEHVSLPNSLATVRMNHLQKVSLVMCNVGQVFRNSTFRISDAFP 651 (695)
Q Consensus 572 ~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~lp~i~~l~~L~~L~l~~~~i~~~~~~~~~~l~~~l~ 651 (695)
..++|+.|++++|.+....++.. +..+++|++|++++|.++.++.++.+++|++|++++|.++..+|..+. .++
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~--~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~----~l~ 95 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGL--TAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFGGLDMLAE----KLP 95 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSC--CGGGGGCCEEEEESSCCCCCSSCCCCSSCCEEEEESCCCCSCCCHHHH----HCT
T ss_pred CcccCCEEECCCCCCChhhHHHH--HHhCCCCCEEeCcCCCCCChhhhccCCCCCEEECcCCcCchHHHHHHh----hCC
Confidence 45789999999998743344332 688999999999999998777788999999999999999987666664 699
Q ss_pred CccEEecccccccccCc--hhhcCCCCCceeecccccCCCCCCC
Q 042541 652 NLLEMDIDYCNDLIELP--DGLCDIVSMEKLRITNCHRLSALPE 693 (695)
Q Consensus 652 ~L~~L~l~~c~~l~~lP--~~i~~L~~L~~L~l~~~~~l~~lP~ 693 (695)
+|++|++++| .+..+| ..++.+++|++|++++|+ +..+|.
T Consensus 96 ~L~~L~Ls~N-~l~~~~~~~~l~~l~~L~~L~l~~N~-l~~~~~ 137 (168)
T 2ell_A 96 NLTHLNLSGN-KLKDISTLEPLKKLECLKSLDLFNCE-VTNLND 137 (168)
T ss_dssp TCCEEECBSS-SCCSSGGGGGGSSCSCCCEEECCSSG-GGTSTT
T ss_pred CCCEEeccCC-ccCcchhHHHHhcCCCCCEEEeeCCc-CcchHH
Confidence 9999999997 678877 689999999999999976 666664
No 94
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.18 E-value=4.9e-11 Score=132.95 Aligned_cols=153 Identities=14% Similarity=0.107 Sum_probs=101.2
Q ss_pred ccceEEeeecCCcccCCCC-CCCCCceEEEEEEccCccccCChhhcCCCCCcEEEEcccCCCCcccCcccccccCCCCcE
Q 042541 527 NNASLLSISTDETFSSNWP-DMQGPEVKVVVLNIRTKKYVLPDFLQKMDELKVLIVTNYGFSPAELNNFRVLSALSKLKK 605 (695)
Q Consensus 527 ~~~r~l~~~~~~~~~~~~~-~~~~~~l~~L~l~~~~~~~~~p~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~ 605 (695)
...+++.+..+......+. ...+++|++|.++.+......|..|.++++|++|++++|.+... ....++.+++|++
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~---~~~~~~~l~~L~~ 102 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSL---SSSWFGPLSSLKY 102 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSC---CHHHHTTCTTCCE
T ss_pred CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCcc---CHHHhccCCCCcE
Confidence 4667777765543222221 23567777777777766666666777777777777777765321 1122667777777
Q ss_pred EEeccCCCCC--cc-cccccccccEEeecccc-CCcccccchhhhcccCCCccEEecccccccccCchhhcCCCCCceee
Q 042541 606 IRLEHVSLPN--SL-ATVRMNHLQKVSLVMCN-VGQVFRNSTFRISDAFPNLLEMDIDYCNDLIELPDGLCDIVSMEKLR 681 (695)
Q Consensus 606 L~L~~~~l~~--lp-~i~~l~~L~~L~l~~~~-i~~~~~~~~~~l~~~l~~L~~L~l~~c~~l~~lP~~i~~L~~L~~L~ 681 (695)
|++++|.+.. .| .++++++|++|++++|. +..+++..+. .+++|++|++++|......|..++++++|++|+
T Consensus 103 L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~----~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 178 (549)
T 2z81_A 103 LNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFA----GLTSLNELEIKALSLRNYQSQSLKSIRDIHHLT 178 (549)
T ss_dssp EECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTT----TCCEEEEEEEEETTCCEECTTTTTTCSEEEEEE
T ss_pred EECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhh----cccccCeeeccCCcccccChhhhhccccCceEe
Confidence 7777777763 45 67777777777777776 5566555554 677777777777665555777777777788887
Q ss_pred ccccc
Q 042541 682 ITNCH 686 (695)
Q Consensus 682 l~~~~ 686 (695)
+++|.
T Consensus 179 l~~n~ 183 (549)
T 2z81_A 179 LHLSE 183 (549)
T ss_dssp EECSB
T ss_pred cccCc
Confidence 77754
No 95
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.17 E-value=1.1e-10 Score=116.79 Aligned_cols=147 Identities=14% Similarity=0.147 Sum_probs=111.7
Q ss_pred cceEEeeecCCcccCCCCCCCCCceEEEEEEccCccccCChhhcCCCCCcEEEEcccCCCCcccCcccccccCCCCcEEE
Q 042541 528 NASLLSISTDETFSSNWPDMQGPEVKVVVLNIRTKKYVLPDFLQKMDELKVLIVTNYGFSPAELNNFRVLSALSKLKKIR 607 (695)
Q Consensus 528 ~~r~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~p~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~ 607 (695)
..+.+.+.+.... .......+++|+.|.++.+.... +|. +..+++|++|++++|.+.. ++. +.. ++|++|+
T Consensus 42 ~L~~L~l~~n~i~-~l~~l~~l~~L~~L~L~~N~i~~-~~~-l~~l~~L~~L~L~~N~l~~--l~~---~~~-~~L~~L~ 112 (263)
T 1xeu_A 42 GVQNFNGDNSNIQ-SLAGMQFFTNLKELHLSHNQISD-LSP-LKDLTKLEELSVNRNRLKN--LNG---IPS-ACLSRLF 112 (263)
T ss_dssp TCSEEECTTSCCC-CCTTGGGCTTCCEEECCSSCCCC-CGG-GTTCSSCCEEECCSSCCSC--CTT---CCC-SSCCEEE
T ss_pred cCcEEECcCCCcc-cchHHhhCCCCCEEECCCCccCC-Chh-hccCCCCCEEECCCCccCC--cCc---ccc-CcccEEE
Confidence 4556666544322 11222367899999998885544 344 8999999999999987742 222 333 8899999
Q ss_pred eccCCCCCcccccccccccEEeeccccCCcccccchhhhcccCCCccEEecccccccccCchhhcCCCCCceeecccccC
Q 042541 608 LEHVSLPNSLATVRMNHLQKVSLVMCNVGQVFRNSTFRISDAFPNLLEMDIDYCNDLIELPDGLCDIVSMEKLRITNCHR 687 (695)
Q Consensus 608 L~~~~l~~lp~i~~l~~L~~L~l~~~~i~~~~~~~~~~l~~~l~~L~~L~l~~c~~l~~lP~~i~~L~~L~~L~l~~~~~ 687 (695)
+++|.++.+|.++++++|++|++++|.++.++ .. . .+++|++|++++| .+..+ ..+..+++|+.|++++|+
T Consensus 113 L~~N~l~~~~~l~~l~~L~~L~Ls~N~i~~~~-~l-~----~l~~L~~L~L~~N-~i~~~-~~l~~l~~L~~L~l~~N~- 183 (263)
T 1xeu_A 113 LDNNELRDTDSLIHLKNLEILSIRNNKLKSIV-ML-G----FLSKLEVLDLHGN-EITNT-GGLTRLKKVNWIDLTGQK- 183 (263)
T ss_dssp CCSSCCSBSGGGTTCTTCCEEECTTSCCCBCG-GG-G----GCTTCCEEECTTS-CCCBC-TTSTTCCCCCEEEEEEEE-
T ss_pred ccCCccCCChhhcCcccccEEECCCCcCCCCh-HH-c----cCCCCCEEECCCC-cCcch-HHhccCCCCCEEeCCCCc-
Confidence 99999998888889999999999999999875 33 3 8999999999996 46666 569999999999999976
Q ss_pred CCCCC
Q 042541 688 LSALP 692 (695)
Q Consensus 688 l~~lP 692 (695)
+...|
T Consensus 184 ~~~~~ 188 (263)
T 1xeu_A 184 CVNEP 188 (263)
T ss_dssp EECCC
T ss_pred ccCCc
Confidence 54444
No 96
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.17 E-value=2.4e-11 Score=124.79 Aligned_cols=150 Identities=17% Similarity=0.160 Sum_probs=92.2
Q ss_pred CccceEEeeecCCcccCCCCC-CCCCceEEEEEEccCcccc--C--ChhhcCCCCCcEEEEcccCCCCcccCc-c-cccc
Q 042541 526 PNNASLLSISTDETFSSNWPD-MQGPEVKVVVLNIRTKKYV--L--PDFLQKMDELKVLIVTNYGFSPAELNN-F-RVLS 598 (695)
Q Consensus 526 ~~~~r~l~~~~~~~~~~~~~~-~~~~~l~~L~l~~~~~~~~--~--p~~~~~l~~Lr~L~l~~~~~~~~~~~~-~-~~l~ 598 (695)
....++|.+..+......+.. ..+++|+.|.++.|...+. + +..+..+++|++|++++|.+.. ++. . ..++
T Consensus 144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~--l~~~~~~l~~ 221 (310)
T 4glp_A 144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET--PTGVCAALAA 221 (310)
T ss_dssp CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC--HHHHHHHHHH
T ss_pred ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc--hHHHHHHHHh
Confidence 346667777655442222222 2567777777777754321 2 2234667777777777776531 111 0 1145
Q ss_pred cCCCCcEEEeccCCCCCc-c-ccccc---ccccEEeeccccCCcccccchhhhcccCCCccEEecccccccccCchhhcC
Q 042541 599 ALSKLKKIRLEHVSLPNS-L-ATVRM---NHLQKVSLVMCNVGQVFRNSTFRISDAFPNLLEMDIDYCNDLIELPDGLCD 673 (695)
Q Consensus 599 ~l~~L~~L~L~~~~l~~l-p-~i~~l---~~L~~L~l~~~~i~~~~~~~~~~l~~~l~~L~~L~l~~c~~l~~lP~~i~~ 673 (695)
.+++|++|+|++|.+..+ | .++.+ ++|++|+|++|.++.+|... .++|++|++++| .+..+|. +..
T Consensus 222 ~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~-------~~~L~~L~Ls~N-~l~~~~~-~~~ 292 (310)
T 4glp_A 222 AGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGL-------PAKLRVLDLSSN-RLNRAPQ-PDE 292 (310)
T ss_dssp HTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCC-------CSCCSCEECCSC-CCCSCCC-TTS
T ss_pred cCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhh-------cCCCCEEECCCC-cCCCCch-hhh
Confidence 667777888877777754 6 66655 57778888777777665433 257777777775 4566665 667
Q ss_pred CCCCceeeccccc
Q 042541 674 IVSMEKLRITNCH 686 (695)
Q Consensus 674 L~~L~~L~l~~~~ 686 (695)
+++|+.|++++|+
T Consensus 293 l~~L~~L~L~~N~ 305 (310)
T 4glp_A 293 LPEVDNLTLDGNP 305 (310)
T ss_dssp CCCCSCEECSSTT
T ss_pred CCCccEEECcCCC
Confidence 7777788877765
No 97
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.17 E-value=1.5e-10 Score=120.07 Aligned_cols=103 Identities=16% Similarity=0.174 Sum_probs=47.3
Q ss_pred CceEEEEEEccCccccCChhhcCCCCCcEEEEcccCCCCcccCcccccccCCCCcEEEeccCCCCCcc-cccccccccEE
Q 042541 550 PEVKVVVLNIRTKKYVLPDFLQKMDELKVLIVTNYGFSPAELNNFRVLSALSKLKKIRLEHVSLPNSL-ATVRMNHLQKV 628 (695)
Q Consensus 550 ~~l~~L~l~~~~~~~~~p~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~lp-~i~~l~~L~~L 628 (695)
++++.|.++.+......|..+.++++|++|++++|.+... .+..++.+++|++|++++|.+..+| .+. ++|++|
T Consensus 54 ~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~---~~~~~~~l~~L~~L~L~~n~l~~l~~~~~--~~L~~L 128 (332)
T 2ft3_A 54 PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKI---HEKAFSPLRKLQKLYISKNHLVEIPPNLP--SSLVEL 128 (332)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEE---CGGGSTTCTTCCEEECCSSCCCSCCSSCC--TTCCEE
T ss_pred CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCcc---CHhHhhCcCCCCEEECCCCcCCccCcccc--ccCCEE
Confidence 3445555544443333334455555555555555443210 0112444555555555555555444 332 455555
Q ss_pred eeccccCCcccccchhhhcccCCCccEEecccc
Q 042541 629 SLVMCNVGQVFRNSTFRISDAFPNLLEMDIDYC 661 (695)
Q Consensus 629 ~l~~~~i~~~~~~~~~~l~~~l~~L~~L~l~~c 661 (695)
++++|.++.+++..+. .+++|++|++++|
T Consensus 129 ~l~~n~i~~~~~~~~~----~l~~L~~L~l~~n 157 (332)
T 2ft3_A 129 RIHDNRIRKVPKGVFS----GLRNMNCIEMGGN 157 (332)
T ss_dssp ECCSSCCCCCCSGGGS----SCSSCCEEECCSC
T ss_pred ECCCCccCccCHhHhC----CCccCCEEECCCC
Confidence 5555555544444333 4455555555543
No 98
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.17 E-value=1e-10 Score=132.03 Aligned_cols=161 Identities=12% Similarity=0.096 Sum_probs=126.3
Q ss_pred CCccceEEeeecCCcccCCCC-CCCCCceEEEEEEccCccccCChhhcCCCCCcEEEEcccCCCCcccCcccccccCCCC
Q 042541 525 HPNNASLLSISTDETFSSNWP-DMQGPEVKVVVLNIRTKKYVLPDFLQKMDELKVLIVTNYGFSPAELNNFRVLSALSKL 603 (695)
Q Consensus 525 ~~~~~r~l~~~~~~~~~~~~~-~~~~~~l~~L~l~~~~~~~~~p~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L 603 (695)
.+...+++.+.++......+. ...+++|++|.++.+......|..|.++++|++|++++|.+... .+..++.+++|
T Consensus 31 l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~---~~~~~~~l~~L 107 (606)
T 3t6q_A 31 LPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFM---AETALSGPKAL 107 (606)
T ss_dssp SCTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEE---CTTTTSSCTTC
T ss_pred CCCcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCccccc---Chhhhcccccc
Confidence 445788898887654333222 23789999999999887777888999999999999999876421 12237899999
Q ss_pred cEEEeccCCCCCc-c-cccccccccEEeeccccCCcccccchhhhcccCCCccEEecccccccccCchhhcCCCCCc--e
Q 042541 604 KKIRLEHVSLPNS-L-ATVRMNHLQKVSLVMCNVGQVFRNSTFRISDAFPNLLEMDIDYCNDLIELPDGLCDIVSME--K 679 (695)
Q Consensus 604 ~~L~L~~~~l~~l-p-~i~~l~~L~~L~l~~~~i~~~~~~~~~~l~~~l~~L~~L~l~~c~~l~~lP~~i~~L~~L~--~ 679 (695)
++|++++|.+..+ | .++++++|++|++++|.+..++...+. .+++|++|++++|......|..++.+++|+ .
T Consensus 108 ~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~----~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~ 183 (606)
T 3t6q_A 108 KHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGF----PTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLS 183 (606)
T ss_dssp CEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTC----CCTTCCEEECCSSCCCEECHHHHHTTTTCCSEE
T ss_pred cEeeccccCcccCCcchhccCCcccEEECCCCcccccCccccc----CCcccCEEEcccCcccccChhhhhhhcccceeE
Confidence 9999999999987 4 899999999999999999986543333 799999999999754444467799999999 8
Q ss_pred eecccccCCCCCCC
Q 042541 680 LRITNCHRLSALPE 693 (695)
Q Consensus 680 L~l~~~~~l~~lP~ 693 (695)
|++++|. +..+|+
T Consensus 184 L~l~~n~-l~~~~~ 196 (606)
T 3t6q_A 184 LNLNGND-IAGIEP 196 (606)
T ss_dssp EECTTCC-CCEECT
T ss_pred EecCCCc-cCccCh
Confidence 9999976 554443
No 99
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.17 E-value=7.9e-11 Score=131.87 Aligned_cols=134 Identities=16% Similarity=0.179 Sum_probs=96.3
Q ss_pred CceEEEEEEccCccccCChhhcCCCCCcEEEEcccCCCCcccCcccccccCCCCcEEEeccCCCCCcc--cccccccccE
Q 042541 550 PEVKVVVLNIRTKKYVLPDFLQKMDELKVLIVTNYGFSPAELNNFRVLSALSKLKKIRLEHVSLPNSL--ATVRMNHLQK 627 (695)
Q Consensus 550 ~~l~~L~l~~~~~~~~~p~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~lp--~i~~l~~L~~ 627 (695)
++++.|.++.+......+..|.++++|++|++++|.+.. + ....++.+++|++|+|++|.+..+| .++++++|++
T Consensus 28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~--i-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 104 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT--I-EDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQK 104 (570)
T ss_dssp SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCE--E-CTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCE
T ss_pred ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCc--c-CcccccCchhCCEEeCcCCcCCccCHhhhcCcccccc
Confidence 467778887776655556677888888888888776532 1 1123677888888888888887665 7778888888
Q ss_pred EeeccccCCcccccchhhhcccCCCccEEecccccccc-cCchhhcCCCCCceeecccccCCCCC
Q 042541 628 VSLVMCNVGQVFRNSTFRISDAFPNLLEMDIDYCNDLI-ELPDGLCDIVSMEKLRITNCHRLSAL 691 (695)
Q Consensus 628 L~l~~~~i~~~~~~~~~~l~~~l~~L~~L~l~~c~~l~-~lP~~i~~L~~L~~L~l~~~~~l~~l 691 (695)
|++++|.++.+++..+. .+++|++|++++|.... .+|..++++++|++|++++|. +..+
T Consensus 105 L~L~~n~l~~l~~~~~~----~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~-l~~~ 164 (570)
T 2z63_A 105 LVAVETNLASLENFPIG----HLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK-IQSI 164 (570)
T ss_dssp EECTTSCCCCSTTCSCT----TCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSC-CCEE
T ss_pred ccccccccccCCCcccc----ccccccEEecCCCccceecChhhhcccCCCCEEeCcCCc-ccee
Confidence 88888888877765444 78888888888764333 467888888888888888865 4444
No 100
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.17 E-value=8.4e-11 Score=132.76 Aligned_cols=134 Identities=13% Similarity=0.134 Sum_probs=81.1
Q ss_pred CCCceEEEEEEccCccccCChhhcCCCCCcEEEEcccCCCCcccCcccccccCCCCcEEEeccCCCCCc-c-cccccccc
Q 042541 548 QGPEVKVVVLNIRTKKYVLPDFLQKMDELKVLIVTNYGFSPAELNNFRVLSALSKLKKIRLEHVSLPNS-L-ATVRMNHL 625 (695)
Q Consensus 548 ~~~~l~~L~l~~~~~~~~~p~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~l-p-~i~~l~~L 625 (695)
.+++|+.|.++.+......|..+..+++|++|++++|.+....++....+..+++|++|++++|.+..+ | .++++++|
T Consensus 423 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 502 (606)
T 3t6q_A 423 NLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMM 502 (606)
T ss_dssp TCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred CcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCC
Confidence 455666666666655555555666666666666666655332222233456666667777766666644 3 66666677
Q ss_pred cEEeeccccCCcccccchhhhcccCCCccEEecccccccccCchhhcCCCCCceeeccccc
Q 042541 626 QKVSLVMCNVGQVFRNSTFRISDAFPNLLEMDIDYCNDLIELPDGLCDIVSMEKLRITNCH 686 (695)
Q Consensus 626 ~~L~l~~~~i~~~~~~~~~~l~~~l~~L~~L~l~~c~~l~~lP~~i~~L~~L~~L~l~~~~ 686 (695)
++|+|++|.++..++..+. .+++| .|++++|......|..++.+++|+.|++++|+
T Consensus 503 ~~L~Ls~N~l~~~~~~~l~----~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 558 (606)
T 3t6q_A 503 NHVDLSHNRLTSSSIEALS----HLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNP 558 (606)
T ss_dssp CEEECCSSCCCGGGGGGGT----TCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCC
T ss_pred CEEECCCCccCcCChhHhC----ccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCC
Confidence 7777777766666655554 66666 66776654443344446666677777776665
No 101
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.17 E-value=4.9e-11 Score=108.06 Aligned_cols=114 Identities=18% Similarity=0.300 Sum_probs=94.6
Q ss_pred CCCCCcEEEEcccCCCCcccCcccccccCCCCcEEEeccCCCCCcccccccccccEEeeccccCCcccccchhhhcccCC
Q 042541 572 KMDELKVLIVTNYGFSPAELNNFRVLSALSKLKKIRLEHVSLPNSLATVRMNHLQKVSLVMCNVGQVFRNSTFRISDAFP 651 (695)
Q Consensus 572 ~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~lp~i~~l~~L~~L~l~~~~i~~~~~~~~~~l~~~l~ 651 (695)
..++|+.|++++|.+....++. .++.+++|++|++++|.++.++.++++++|++|++++|.++..+|..+. .++
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~----~l~ 88 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEG--LTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDNRVSGGLEVLAE----KCP 88 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCS--CCTTCTTCCEEECTTSCCCCCTTCCCCTTCCEEECCSSCCCSCTHHHHH----HCT
T ss_pred CCccCeEEEccCCcCChhHHHH--HHhhcCCCcEEECcCCCCCCchhhhcCCCCCEEECCCCcccchHHHHhh----hCC
Confidence 3478999999999874233333 3688999999999999998777788999999999999999986666654 699
Q ss_pred CccEEecccccccccCc--hhhcCCCCCceeecccccCCCCCCC
Q 042541 652 NLLEMDIDYCNDLIELP--DGLCDIVSMEKLRITNCHRLSALPE 693 (695)
Q Consensus 652 ~L~~L~l~~c~~l~~lP--~~i~~L~~L~~L~l~~~~~l~~lP~ 693 (695)
+|++|++++|. +..+| ..++.+++|++|++++|+ +..+|.
T Consensus 89 ~L~~L~ls~N~-i~~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~ 130 (149)
T 2je0_A 89 NLTHLNLSGNK-IKDLSTIEPLKKLENLKSLDLFNCE-VTNLND 130 (149)
T ss_dssp TCCEEECTTSC-CCSHHHHGGGGGCTTCCEEECTTCG-GGGSTT
T ss_pred CCCEEECCCCc-CCChHHHHHHhhCCCCCEEeCcCCc-ccchHH
Confidence 99999999974 67765 789999999999999976 776664
No 102
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.16 E-value=1.8e-10 Score=109.20 Aligned_cols=111 Identities=18% Similarity=0.235 Sum_probs=79.6
Q ss_pred cCChhhcCCCCCcEEEEcccCCCCcccCcccccccCCCCcEEEeccCCCCCcc--cccccccccEEeeccccCCcccccc
Q 042541 565 VLPDFLQKMDELKVLIVTNYGFSPAELNNFRVLSALSKLKKIRLEHVSLPNSL--ATVRMNHLQKVSLVMCNVGQVFRNS 642 (695)
Q Consensus 565 ~~p~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~lp--~i~~l~~L~~L~l~~~~i~~~~~~~ 642 (695)
.+|..+ .++|++|++++|.+. .++ ..+..+++|++|+|++|.++.++ .+.++++|++|+|++|.++.+++..
T Consensus 24 ~ip~~~--~~~l~~L~L~~n~i~--~ip--~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~ 97 (193)
T 2wfh_A 24 VLPKGI--PRDVTELYLDGNQFT--LVP--KELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRT 97 (193)
T ss_dssp SCCSCC--CTTCCEEECCSSCCC--SCC--GGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTT
T ss_pred cCCCCC--CCCCCEEECCCCcCc--hhH--HHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHH
Confidence 445433 246788888877663 222 34677788888888888887666 6778888888888888888877766
Q ss_pred hhhhcccCCCccEEecccccccccCchh-hcCCCCCceeeccccc
Q 042541 643 TFRISDAFPNLLEMDIDYCNDLIELPDG-LCDIVSMEKLRITNCH 686 (695)
Q Consensus 643 ~~~l~~~l~~L~~L~l~~c~~l~~lP~~-i~~L~~L~~L~l~~~~ 686 (695)
+. .+++|++|+|++| .+..+|.+ +..+++|++|++++|+
T Consensus 98 f~----~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 98 FD----GLKSLRLLSLHGN-DISVVPEGAFNDLSALSHLAIGANP 137 (193)
T ss_dssp TT----TCTTCCEEECCSS-CCCBCCTTTTTTCTTCCEEECCSSC
T ss_pred hC----CCCCCCEEECCCC-CCCeeChhhhhcCccccEEEeCCCC
Confidence 65 7788888888875 46667664 6778888888888765
No 103
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.16 E-value=1.3e-10 Score=128.64 Aligned_cols=136 Identities=10% Similarity=0.184 Sum_probs=77.4
Q ss_pred CCCceEEEEEEccCccccCChhhcCCCCCcEEEEcccCCCCcccCc-ccccccCCCCcEEEeccCCCCC-cc--cccccc
Q 042541 548 QGPEVKVVVLNIRTKKYVLPDFLQKMDELKVLIVTNYGFSPAELNN-FRVLSALSKLKKIRLEHVSLPN-SL--ATVRMN 623 (695)
Q Consensus 548 ~~~~l~~L~l~~~~~~~~~p~~~~~l~~Lr~L~l~~~~~~~~~~~~-~~~l~~l~~L~~L~L~~~~l~~-lp--~i~~l~ 623 (695)
.+++|+.|.++.+......|..+..+++|++|++++|.+.. ++. +..++.+++|++|++++|.+.. +| .+..++
T Consensus 322 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~--l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~ 399 (520)
T 2z7x_B 322 KISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKE--LSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTK 399 (520)
T ss_dssp SCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCB--HHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCT
T ss_pred hCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCc--cccchHHHhhCCCCCEEECCCCcCCcccccchhccCc
Confidence 45666666666665555566666666666666666665531 111 1225566666666666666664 66 355666
Q ss_pred cccEEeeccccCCcccccchhhhcccCCCccEEecccccccccCchhhcCCCCCceeecccccCCCCCCC
Q 042541 624 HLQKVSLVMCNVGQVFRNSTFRISDAFPNLLEMDIDYCNDLIELPDGLCDIVSMEKLRITNCHRLSALPE 693 (695)
Q Consensus 624 ~L~~L~l~~~~i~~~~~~~~~~l~~~l~~L~~L~l~~c~~l~~lP~~i~~L~~L~~L~l~~~~~l~~lP~ 693 (695)
+|++|++++|.+++..+..+ .++|++|++++| .+..+|.++..+++|++|++++|. +..+|.
T Consensus 400 ~L~~L~Ls~N~l~~~~~~~l------~~~L~~L~Ls~N-~l~~ip~~~~~l~~L~~L~L~~N~-l~~l~~ 461 (520)
T 2z7x_B 400 SLLSLNMSSNILTDTIFRCL------PPRIKVLDLHSN-KIKSIPKQVVKLEALQELNVASNQ-LKSVPD 461 (520)
T ss_dssp TCCEEECCSSCCCGGGGGSC------CTTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCSSC-CCCCCT
T ss_pred cCCEEECcCCCCCcchhhhh------cccCCEEECCCC-cccccchhhhcCCCCCEEECCCCc-CCccCH
Confidence 66666666666544332211 145666666654 344666665566666666666643 555554
No 104
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.16 E-value=5.2e-11 Score=132.72 Aligned_cols=154 Identities=10% Similarity=0.103 Sum_probs=100.6
Q ss_pred CccceEEeeecCCcccCCCC-CCCCCceEEEEEEccCccccCChhhcCCCCCcEEEEcccCCCCcccCcccccccCCCCc
Q 042541 526 PNNASLLSISTDETFSSNWP-DMQGPEVKVVVLNIRTKKYVLPDFLQKMDELKVLIVTNYGFSPAELNNFRVLSALSKLK 604 (695)
Q Consensus 526 ~~~~r~l~~~~~~~~~~~~~-~~~~~~l~~L~l~~~~~~~~~p~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~ 604 (695)
....+++.+..+......+. ...+++|++|.++.+......|..++++++|++|++++|.+.... .++.++.+++|+
T Consensus 49 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~--~~~~~~~l~~L~ 126 (549)
T 2z81_A 49 CANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLG--VTSLFPNLTNLQ 126 (549)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSC--SSCSCTTCTTCC
T ss_pred CCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccc--hhhhhhccCCcc
Confidence 34566776665543222211 235677777777777665555556777888888888777653211 122367777788
Q ss_pred EEEeccCC-CCCcc--cccccccccEEeeccccCCcccccchhhhcccCCCccEEecccccccccCchhh-cCCCCCcee
Q 042541 605 KIRLEHVS-LPNSL--ATVRMNHLQKVSLVMCNVGQVFRNSTFRISDAFPNLLEMDIDYCNDLIELPDGL-CDIVSMEKL 680 (695)
Q Consensus 605 ~L~L~~~~-l~~lp--~i~~l~~L~~L~l~~~~i~~~~~~~~~~l~~~l~~L~~L~l~~c~~l~~lP~~i-~~L~~L~~L 680 (695)
+|++++|. +..+| .++++++|++|++++|.++...|..+. .+++|++|++++|. ...+|..+ +.+++|++|
T Consensus 127 ~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~----~l~~L~~L~l~~n~-~~~~~~~~~~~l~~L~~L 201 (549)
T 2z81_A 127 TLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLK----SIRDIHHLTLHLSE-SAFLLEIFADILSSVRYL 201 (549)
T ss_dssp EEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTT----TCSEEEEEEEECSB-STTHHHHHHHSTTTBSEE
T ss_pred EEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhh----ccccCceEecccCc-ccccchhhHhhcccccEE
Confidence 88887776 55665 677777888888888877776665554 67778888877753 45566553 467788888
Q ss_pred eccccc
Q 042541 681 RITNCH 686 (695)
Q Consensus 681 ~l~~~~ 686 (695)
++++|.
T Consensus 202 ~L~~n~ 207 (549)
T 2z81_A 202 ELRDTN 207 (549)
T ss_dssp EEESCB
T ss_pred EccCCc
Confidence 887765
No 105
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.15 E-value=1.3e-10 Score=133.14 Aligned_cols=160 Identities=17% Similarity=0.227 Sum_probs=123.4
Q ss_pred CCccceEEeeecCCcccCCCC-CCCCCceEEEEEEccCccccCChhhcCCCCCcEEEEcccCCCCcccCcccccccCCCC
Q 042541 525 HPNNASLLSISTDETFSSNWP-DMQGPEVKVVVLNIRTKKYVLPDFLQKMDELKVLIVTNYGFSPAELNNFRVLSALSKL 603 (695)
Q Consensus 525 ~~~~~r~l~~~~~~~~~~~~~-~~~~~~l~~L~l~~~~~~~~~p~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L 603 (695)
.+..++++.+..+........ ...+++|++|.++.+......|..+.++++|++|++++|.+.. ++. ..++.+++|
T Consensus 23 ~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--l~~-~~~~~l~~L 99 (680)
T 1ziw_A 23 LPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQ--LSD-KTFAFCTNL 99 (680)
T ss_dssp SCTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCC--CCT-TTTTTCTTC
T ss_pred cCCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCc--cCh-hhhccCCCC
Confidence 346788998877653322221 2367899999999887777778889999999999999887642 211 237889999
Q ss_pred cEEEeccCCCCCcc--cccccccccEEeeccccCCcccccchhhhcccCCCccEEecccccccccCch-hhc--CCCCCc
Q 042541 604 KKIRLEHVSLPNSL--ATVRMNHLQKVSLVMCNVGQVFRNSTFRISDAFPNLLEMDIDYCNDLIELPD-GLC--DIVSME 678 (695)
Q Consensus 604 ~~L~L~~~~l~~lp--~i~~l~~L~~L~l~~~~i~~~~~~~~~~l~~~l~~L~~L~l~~c~~l~~lP~-~i~--~L~~L~ 678 (695)
++|++++|.+..+| .++++++|++|++++|.++..++..+. .+++|++|++++|. +..+|. .++ .+++|+
T Consensus 100 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~----~l~~L~~L~L~~n~-l~~~~~~~~~~~~~~~L~ 174 (680)
T 1ziw_A 100 TELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQV----QLENLQELLLSNNK-IQALKSEELDIFANSSLK 174 (680)
T ss_dssp SEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSS----CCTTCCEEECCSSC-CCCBCHHHHGGGTTCEES
T ss_pred CEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhc----ccccCCEEEccCCc-ccccCHHHhhcccccccc
Confidence 99999999998777 789999999999999999888887665 89999999999975 455554 343 568999
Q ss_pred eeecccccCCCCCCC
Q 042541 679 KLRITNCHRLSALPE 693 (695)
Q Consensus 679 ~L~l~~~~~l~~lP~ 693 (695)
+|++++|. +..+|+
T Consensus 175 ~L~L~~n~-l~~~~~ 188 (680)
T 1ziw_A 175 KLELSSNQ-IKEFSP 188 (680)
T ss_dssp EEECTTCC-CCCBCT
T ss_pred EEECCCCc-ccccCh
Confidence 99999976 555543
No 106
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.15 E-value=1.8e-10 Score=134.95 Aligned_cols=139 Identities=11% Similarity=0.102 Sum_probs=112.0
Q ss_pred CCCceEEEEEEccCccccCChhhcCCCCCcEEEEcccCCCCcccCcccccccCCCCcEEEeccCCCCCc-c-cccccccc
Q 042541 548 QGPEVKVVVLNIRTKKYVLPDFLQKMDELKVLIVTNYGFSPAELNNFRVLSALSKLKKIRLEHVSLPNS-L-ATVRMNHL 625 (695)
Q Consensus 548 ~~~~l~~L~l~~~~~~~~~p~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~l-p-~i~~l~~L 625 (695)
.+++++.|.|+.+......|..|.++++|++|++++|... ..+ .+..+++|++|++|+|++|.+..+ | .++++++|
T Consensus 22 lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~-~~i-~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L 99 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTP-LTI-DKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHL 99 (844)
T ss_dssp SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCC-CEE-CTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSC
T ss_pred CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCc-ccc-CHHHhcCCCCCCEEECCCCcCcccCHhHccCCccc
Confidence 5678999999999887778889999999999999998552 122 123488999999999999999966 6 99999999
Q ss_pred cEEeeccccCCccccc--chhhhcccCCCccEEecccccccccCc-hhhcCCCCCceeecccccCCCCCC
Q 042541 626 QKVSLVMCNVGQVFRN--STFRISDAFPNLLEMDIDYCNDLIELP-DGLCDIVSMEKLRITNCHRLSALP 692 (695)
Q Consensus 626 ~~L~l~~~~i~~~~~~--~~~~l~~~l~~L~~L~l~~c~~l~~lP-~~i~~L~~L~~L~l~~~~~l~~lP 692 (695)
++|+|++|.+++..+. .+. .+++|++|++++|......| ..++++++|++|++++|..-+..|
T Consensus 100 ~~L~Ls~n~l~~~~~~~~~~~----~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~ 165 (844)
T 3j0a_A 100 FELRLYFCGLSDAVLKDGYFR----NLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCE 165 (844)
T ss_dssp CCEECTTCCCSSCCSTTCCCS----SCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCS
T ss_pred CEeeCcCCCCCcccccCcccc----ccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCH
Confidence 9999999999874332 244 89999999999976444333 579999999999999976433333
No 107
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.15 E-value=1.2e-10 Score=133.33 Aligned_cols=130 Identities=15% Similarity=0.159 Sum_probs=77.9
Q ss_pred CceEEEEEEccCccccCChhhcCCCCCcEEEEcccCCCCcccCcccccccCCCCcEEEeccCCCCCcc--cccccccccE
Q 042541 550 PEVKVVVLNIRTKKYVLPDFLQKMDELKVLIVTNYGFSPAELNNFRVLSALSKLKKIRLEHVSLPNSL--ATVRMNHLQK 627 (695)
Q Consensus 550 ~~l~~L~l~~~~~~~~~p~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~lp--~i~~l~~L~~ 627 (695)
++++.|.++.+......+..|.++++|++|++++|.+... .+..++.+++|++|+|++|.+..+| .++++++|++
T Consensus 25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~---~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~ 101 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKL---EPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTE 101 (680)
T ss_dssp TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCC---CTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSE
T ss_pred CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCcc---CHHHHhcccCcCEEECCCCccCccChhhhccCCCCCE
Confidence 4566666666554444444566666666666666554211 1122556666666666666666666 4666666666
Q ss_pred EeeccccCCcccccchhhhcccCCCccEEecccccccccCchhhcCCCCCceeeccccc
Q 042541 628 VSLVMCNVGQVFRNSTFRISDAFPNLLEMDIDYCNDLIELPDGLCDIVSMEKLRITNCH 686 (695)
Q Consensus 628 L~l~~~~i~~~~~~~~~~l~~~l~~L~~L~l~~c~~l~~lP~~i~~L~~L~~L~l~~~~ 686 (695)
|++++|.++.+++..+. .+++|++|++++|......|..++++++|++|++++|.
T Consensus 102 L~L~~n~l~~~~~~~~~----~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~ 156 (680)
T 1ziw_A 102 LHLMSNSIQKIKNNPFV----KQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNK 156 (680)
T ss_dssp EECCSSCCCCCCSCTTT----TCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSC
T ss_pred EECCCCccCccChhHcc----ccCCCCEEECCCCcccccCchhhcccccCCEEEccCCc
Confidence 66666666666655544 66666666666654444444556666666666666654
No 108
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.14 E-value=1.6e-11 Score=140.67 Aligned_cols=137 Identities=15% Similarity=0.035 Sum_probs=105.9
Q ss_pred CCCceEEEEEEccCccccCChhhcCCCCCcEEEEcccCCCCcccCcccccccCCCCcEEEeccCCCCCcc-ccccccccc
Q 042541 548 QGPEVKVVVLNIRTKKYVLPDFLQKMDELKVLIVTNYGFSPAELNNFRVLSALSKLKKIRLEHVSLPNSL-ATVRMNHLQ 626 (695)
Q Consensus 548 ~~~~l~~L~l~~~~~~~~~p~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~lp-~i~~l~~L~ 626 (695)
.+++|+.|.|+.+... .+|..+.++++|++|+|++|.+. .++ +.++.|++|++|+|++|.++.+| .+++|++|+
T Consensus 222 ~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~--~lp--~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~ 296 (727)
T 4b8c_D 222 DDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT--ELP--AEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLK 296 (727)
T ss_dssp CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS--CCC--GGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCS
T ss_pred cCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc--ccC--hhhhCCCCCCEEeCcCCcCCccChhhcCCCCCC
Confidence 5678888888777654 77877778999999999998774 332 34889999999999999999999 999999999
Q ss_pred EEeeccccCCcccccchhhhcccCCCccEEecccccccccCchhhcCCC-CCceeecccccCCCCCCCC
Q 042541 627 KVSLVMCNVGQVFRNSTFRISDAFPNLLEMDIDYCNDLIELPDGLCDIV-SMEKLRITNCHRLSALPEG 694 (695)
Q Consensus 627 ~L~l~~~~i~~~~~~~~~~l~~~l~~L~~L~l~~c~~l~~lP~~i~~L~-~L~~L~l~~~~~l~~lP~~ 694 (695)
+|+|++|.++.+|+.+. .|++|++|+|++|...+.+|..++.+. .+..|+|++|...+.+|..
T Consensus 297 ~L~L~~N~l~~lp~~~~-----~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~ 360 (727)
T 4b8c_D 297 YFYFFDNMVTTLPWEFG-----NLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHE 360 (727)
T ss_dssp EEECCSSCCCCCCSSTT-----SCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_pred EEECCCCCCCccChhhh-----cCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCccc
Confidence 99999999998877744 899999999999876666776665432 1223556665555555543
No 109
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.13 E-value=2.6e-10 Score=127.45 Aligned_cols=135 Identities=11% Similarity=0.216 Sum_probs=74.4
Q ss_pred CCCceEEEEEEccCccccCChhhcCCCCCcEEEEcccCCCCcccCc-ccccccCCCCcEEEeccCCCCC-cc--cccccc
Q 042541 548 QGPEVKVVVLNIRTKKYVLPDFLQKMDELKVLIVTNYGFSPAELNN-FRVLSALSKLKKIRLEHVSLPN-SL--ATVRMN 623 (695)
Q Consensus 548 ~~~~l~~L~l~~~~~~~~~p~~~~~l~~Lr~L~l~~~~~~~~~~~~-~~~l~~l~~L~~L~L~~~~l~~-lp--~i~~l~ 623 (695)
.+++|+.|.++.+......|..+.++++|++|++++|.+.. ++. +..++.+++|++|++++|.+.. +| .+..++
T Consensus 351 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~--~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~ 428 (562)
T 3a79_B 351 SPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKN--FFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAE 428 (562)
T ss_dssp SCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCB--TTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCT
T ss_pred CCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCC--cccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcc
Confidence 45566666666665555556666666666666666655421 111 1124556666666666666654 55 355566
Q ss_pred cccEEeeccccCCcccccchhhhcccC-CCccEEecccccccccCchhhcCCCCCceeecccccCCCCCCC
Q 042541 624 HLQKVSLVMCNVGQVFRNSTFRISDAF-PNLLEMDIDYCNDLIELPDGLCDIVSMEKLRITNCHRLSALPE 693 (695)
Q Consensus 624 ~L~~L~l~~~~i~~~~~~~~~~l~~~l-~~L~~L~l~~c~~l~~lP~~i~~L~~L~~L~l~~~~~l~~lP~ 693 (695)
+|++|++++|.+++..+. .+ ++|++|++++| .+..+|.++..+++|++|++++|. +..+|.
T Consensus 429 ~L~~L~l~~n~l~~~~~~-------~l~~~L~~L~L~~N-~l~~ip~~~~~l~~L~~L~L~~N~-l~~l~~ 490 (562)
T 3a79_B 429 SILVLNLSSNMLTGSVFR-------CLPPKVKVLDLHNN-RIMSIPKDVTHLQALQELNVASNQ-LKSVPD 490 (562)
T ss_dssp TCCEEECCSSCCCGGGGS-------SCCTTCSEEECCSS-CCCCCCTTTTSSCCCSEEECCSSC-CCCCCT
T ss_pred cCCEEECCCCCCCcchhh-------hhcCcCCEEECCCC-cCcccChhhcCCCCCCEEECCCCC-CCCCCH
Confidence 666666666655432222 22 45666666654 445566555566666666666543 555554
No 110
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.12 E-value=2.5e-10 Score=119.15 Aligned_cols=126 Identities=13% Similarity=0.166 Sum_probs=84.0
Q ss_pred CCCceEEEEEEccCccccCChhhcCCCCCcEEEEcccCCCCcccCcccccccCCCCcEEEeccCCCCCcccccccccccE
Q 042541 548 QGPEVKVVVLNIRTKKYVLPDFLQKMDELKVLIVTNYGFSPAELNNFRVLSALSKLKKIRLEHVSLPNSLATVRMNHLQK 627 (695)
Q Consensus 548 ~~~~l~~L~l~~~~~~~~~p~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~lp~i~~l~~L~~ 627 (695)
.+++|+.|.++.+.... +|. +..+++|++|++++|.+.. ++.+..+++|++|++++|.++.+|.+..+++|++
T Consensus 219 ~~~~L~~L~l~~n~l~~-~~~-~~~l~~L~~L~l~~n~l~~-----~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~ 291 (347)
T 4fmz_A 219 NMTRLNSLKIGNNKITD-LSP-LANLSQLTWLEIGTNQISD-----INAVKDLTKLKMLNVGSNQISDISVLNNLSQLNS 291 (347)
T ss_dssp GCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCC-----CGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSE
T ss_pred cCCcCCEEEccCCccCC-Ccc-hhcCCCCCEEECCCCccCC-----ChhHhcCCCcCEEEccCCccCCChhhcCCCCCCE
Confidence 55667777776664333 222 6677777777777765532 2336677777777777777776666667777777
Q ss_pred EeeccccCCcccccchhhhcccCCCccEEecccccccccCchhhcCCCCCceeeccccc
Q 042541 628 VSLVMCNVGQVFRNSTFRISDAFPNLLEMDIDYCNDLIELPDGLCDIVSMEKLRITNCH 686 (695)
Q Consensus 628 L~l~~~~i~~~~~~~~~~l~~~l~~L~~L~l~~c~~l~~lP~~i~~L~~L~~L~l~~~~ 686 (695)
|++++|.++..++..+. .+++|++|++++|. +..+|. +..+++|+.|++++|+
T Consensus 292 L~L~~n~l~~~~~~~l~----~l~~L~~L~L~~n~-l~~~~~-~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 292 LFLNNNQLGNEDMEVIG----GLTNLTTLFLSQNH-ITDIRP-LASLSKMDSADFANQV 344 (347)
T ss_dssp EECCSSCCCGGGHHHHH----TCTTCSEEECCSSS-CCCCGG-GGGCTTCSEESSSCC-
T ss_pred EECcCCcCCCcChhHhh----ccccCCEEEccCCc-cccccC-hhhhhccceeehhhhc
Confidence 77777777766665555 67777777777764 455554 7777777777777765
No 111
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.11 E-value=2.4e-10 Score=119.29 Aligned_cols=151 Identities=12% Similarity=0.129 Sum_probs=117.7
Q ss_pred ccceEEeeecCCcccCCCCCCCCCceEEEEEEccCccccCChhhcCCCCCcEEEEcccCCCCcccCcccccccCCCCcEE
Q 042541 527 NNASLLSISTDETFSSNWPDMQGPEVKVVVLNIRTKKYVLPDFLQKMDELKVLIVTNYGFSPAELNNFRVLSALSKLKKI 606 (695)
Q Consensus 527 ~~~r~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~p~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L 606 (695)
...+.+.+..+... .......+++|+.|.+..+......+ +..+++|++|++++|.+.. .+.+..+++|++|
T Consensus 177 ~~L~~L~l~~n~l~-~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~-----~~~~~~l~~L~~L 248 (347)
T 4fmz_A 177 TDLYSLSLNYNQIE-DISPLASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITD-----LSPLANLSQLTWL 248 (347)
T ss_dssp TTCSEEECTTSCCC-CCGGGGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-----CGGGTTCTTCCEE
T ss_pred CCCCEEEccCCccc-ccccccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCC-----CcchhcCCCCCEE
Confidence 45666766554322 11223467889999998875544333 7889999999999987642 2227899999999
Q ss_pred EeccCCCCCcccccccccccEEeeccccCCcccccchhhhcccCCCccEEecccccccccCchhhcCCCCCceeeccccc
Q 042541 607 RLEHVSLPNSLATVRMNHLQKVSLVMCNVGQVFRNSTFRISDAFPNLLEMDIDYCNDLIELPDGLCDIVSMEKLRITNCH 686 (695)
Q Consensus 607 ~L~~~~l~~lp~i~~l~~L~~L~l~~~~i~~~~~~~~~~l~~~l~~L~~L~l~~c~~l~~lP~~i~~L~~L~~L~l~~~~ 686 (695)
++++|.++.++.+..+++|++|++++|.++.++ .. . .+++|+.|++++|......|..++.+++|++|++++|+
T Consensus 249 ~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~-~~-~----~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~ 322 (347)
T 4fmz_A 249 EIGTNQISDINAVKDLTKLKMLNVGSNQISDIS-VL-N----NLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNH 322 (347)
T ss_dssp ECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCG-GG-G----GCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSS
T ss_pred ECCCCccCCChhHhcCCCcCEEEccCCccCCCh-hh-c----CCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCc
Confidence 999999998888889999999999999998863 33 3 89999999999987666677889999999999999987
Q ss_pred CCCCCC
Q 042541 687 RLSALP 692 (695)
Q Consensus 687 ~l~~lP 692 (695)
+..+|
T Consensus 323 -l~~~~ 327 (347)
T 4fmz_A 323 -ITDIR 327 (347)
T ss_dssp -CCCCG
T ss_pred -ccccc
Confidence 55554
No 112
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.10 E-value=4.1e-10 Score=105.19 Aligned_cols=106 Identities=17% Similarity=0.227 Sum_probs=70.9
Q ss_pred CCCcEEEEcccCCCCcccCcccccccCCCCcEEEeccCCCCCcc--cccccccccEEeeccccCCcccccchhhhcccCC
Q 042541 574 DELKVLIVTNYGFSPAELNNFRVLSALSKLKKIRLEHVSLPNSL--ATVRMNHLQKVSLVMCNVGQVFRNSTFRISDAFP 651 (695)
Q Consensus 574 ~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~lp--~i~~l~~L~~L~l~~~~i~~~~~~~~~~l~~~l~ 651 (695)
++|+.|++++|.+.. ++ ...++.+++|++|++++|.++.+| .++.+++|++|++++|.++.+++..+. .++
T Consensus 28 ~~l~~L~l~~n~l~~--~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~----~l~ 100 (177)
T 2o6r_A 28 SSATRLELESNKLQS--LP-HGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFD----KLT 100 (177)
T ss_dssp TTCSEEECCSSCCCC--CC-TTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT----TCT
T ss_pred CCCcEEEeCCCcccE--eC-HHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhh----CCc
Confidence 567777777766531 11 112566777777777777777666 456777777777777777777766554 677
Q ss_pred CccEEecccccccccCchh-hcCCCCCceeecccccC
Q 042541 652 NLLEMDIDYCNDLIELPDG-LCDIVSMEKLRITNCHR 687 (695)
Q Consensus 652 ~L~~L~l~~c~~l~~lP~~-i~~L~~L~~L~l~~~~~ 687 (695)
+|++|++++| .+..+|.. +..+++|++|++++|+.
T Consensus 101 ~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~ 136 (177)
T 2o6r_A 101 QLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNPW 136 (177)
T ss_dssp TCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred ccCEEECcCC-cceEeCHHHhcCCcccCEEEecCCCe
Confidence 7777777775 45666665 46677777777777663
No 113
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.10 E-value=2.3e-10 Score=127.08 Aligned_cols=104 Identities=17% Similarity=0.145 Sum_probs=52.0
Q ss_pred CcEEEEcccCCCCcccCcccccccCCCCcEEEeccCCCCCcc-cccccccccEEeeccccCCcccccchhhhcccCCCcc
Q 042541 576 LKVLIVTNYGFSPAELNNFRVLSALSKLKKIRLEHVSLPNSL-ATVRMNHLQKVSLVMCNVGQVFRNSTFRISDAFPNLL 654 (695)
Q Consensus 576 Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~lp-~i~~l~~L~~L~l~~~~i~~~~~~~~~~l~~~l~~L~ 654 (695)
|++|++++|.+.. + +.++.+++|++|+|++|.++.+| .+++|++|++|+|++|.++++| .+. .|++|+
T Consensus 443 L~~L~Ls~n~l~~--l---p~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~-----~l~~L~ 511 (567)
T 1dce_A 443 VRVLHLAHKDLTV--L---CHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-GVA-----NLPRLQ 511 (567)
T ss_dssp CSEEECTTSCCSS--C---CCGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGT-----TCSSCC
T ss_pred ceEEEecCCCCCC--C---cCccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCc-ccC-----CCCCCc
Confidence 4555555544421 1 12455555555555555555555 5555555555555555555543 222 455555
Q ss_pred EEecccccccccC--chhhcCCCCCceeecccccCCCCCC
Q 042541 655 EMDIDYCNDLIEL--PDGLCDIVSMEKLRITNCHRLSALP 692 (695)
Q Consensus 655 ~L~l~~c~~l~~l--P~~i~~L~~L~~L~l~~~~~l~~lP 692 (695)
+|+|++| .+..+ |..++.|++|+.|+|++|+ +..+|
T Consensus 512 ~L~Ls~N-~l~~~~~p~~l~~l~~L~~L~L~~N~-l~~~~ 549 (567)
T 1dce_A 512 ELLLCNN-RLQQSAAIQPLVSCPRLVLLNLQGNS-LCQEE 549 (567)
T ss_dssp EEECCSS-CCCSSSTTGGGGGCTTCCEEECTTSG-GGGSS
T ss_pred EEECCCC-CCCCCCCcHHHhcCCCCCEEEecCCc-CCCCc
Confidence 5555553 23333 5555555555555555544 43333
No 114
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.08 E-value=4.3e-09 Score=108.63 Aligned_cols=170 Identities=17% Similarity=0.152 Sum_probs=109.5
Q ss_pred CCCCCCCcchHHHHHHHHHc-----CCceEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCCCCCHHHHHHHH
Q 042541 165 PVISPGLDVPLKELKMELFK-----DGRQFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSKNPNVKAIVQKV 239 (695)
Q Consensus 165 ~~~~vGr~~~~~~l~~~L~~-----~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~~~~~~~~~~~i 239 (695)
-+.++|++..++.+..++.. .....|.|+|++|+|||++|+.+++ ... ...++++.+......++
T Consensus 11 ~~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~--~~~----~~~~~~~~~~~~~~~~l---- 80 (324)
T 1hqc_A 11 LDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAH--ELG----VNLRVTSGPAIEKPGDL---- 80 (324)
T ss_dssp TTTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHH--HHT----CCEEEECTTTCCSHHHH----
T ss_pred HHHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHH--HhC----CCEEEEeccccCChHHH----
Confidence 45689999999998887762 3346789999999999999999987 332 22445554433222221
Q ss_pred HHhcCCCCCCCCChHHHHHHHHHHHHhcCCCcEEEEEeCCCCCChHH----HhhhccC------------------CCCC
Q 042541 240 LHHKGYPVPEFQTDEAAINDLERFFKQMRIEAILLVLDDVWPGSESL----LQKLGFQ------------------LPDY 297 (695)
Q Consensus 240 ~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~~~LlVlDdv~~~~~~~----~~~l~~~------------------~~gs 297 (695)
...+..-..+..+|++||+....... +..+... .++.
T Consensus 81 ---------------------~~~l~~~~~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~ 139 (324)
T 1hqc_A 81 ---------------------AAILANSLEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRF 139 (324)
T ss_dssp ---------------------HHHHTTTCCTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCC
T ss_pred ---------------------HHHHHHhccCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCE
Confidence 12221101356789999998776432 1111111 1245
Q ss_pred EEEEEcCCCC-------CCCCCeEecCCCChHHHHHHHHHhccCCCCCCCCCchHHHHHHHHhcCCchhHHHHHHHhh
Q 042541 298 KILVTSRSEF-------PQFGSVHYLKPLTYEAARTLFLHSANLQDGNSYIPDENIVSKILRACKGCPLALKVVGGSL 368 (695)
Q Consensus 298 ~iivTtR~~~-------~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~~~~L 368 (695)
.+|.||.... ...+..+.+.+++.++..+++...+..... .-..+....|++.++|.|..+..+...+
T Consensus 140 ~~i~~t~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~---~~~~~~~~~l~~~~~G~~r~l~~~l~~~ 214 (324)
T 1hqc_A 140 TLIGATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGV---RITEEAALEIGRRSRGTMRVAKRLFRRV 214 (324)
T ss_dssp EEEEEESCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTTC---CCCHHHHHHHHHHSCSCHHHHHHHHHHH
T ss_pred EEEEeCCCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcCC---CCCHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 6776666441 122347899999999999999887654322 1236778999999999998887665543
No 115
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.08 E-value=4.9e-11 Score=122.92 Aligned_cols=154 Identities=13% Similarity=0.003 Sum_probs=122.0
Q ss_pred CccceEEeeecCCcccCCC-CCCCCCceEEEEEEccCccccCChhh-cCCCCCcEEEEcccCCCCcccCcccccccCCCC
Q 042541 526 PNNASLLSISTDETFSSNW-PDMQGPEVKVVVLNIRTKKYVLPDFL-QKMDELKVLIVTNYGFSPAELNNFRVLSALSKL 603 (695)
Q Consensus 526 ~~~~r~l~~~~~~~~~~~~-~~~~~~~l~~L~l~~~~~~~~~p~~~-~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L 603 (695)
....+.+.+..+....... ....+++|+.|.++.+......|..+ ..+++|++|++++|.+.. .+....+++|
T Consensus 119 ~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~-----~~~~~~l~~L 193 (317)
T 3o53_A 119 GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD-----VKGQVVFAKL 193 (317)
T ss_dssp CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE-----EECCCCCTTC
T ss_pred cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcc-----cccccccccC
Confidence 3457788877654322211 12357899999999987766666655 578999999999987742 2334568999
Q ss_pred cEEEeccCCCCCcc-cccccccccEEeeccccCCcccccchhhhcccCCCccEEeccccccc-ccCchhhcCCCCCceee
Q 042541 604 KKIRLEHVSLPNSL-ATVRMNHLQKVSLVMCNVGQVFRNSTFRISDAFPNLLEMDIDYCNDL-IELPDGLCDIVSMEKLR 681 (695)
Q Consensus 604 ~~L~L~~~~l~~lp-~i~~l~~L~~L~l~~~~i~~~~~~~~~~l~~~l~~L~~L~l~~c~~l-~~lP~~i~~L~~L~~L~ 681 (695)
++|+|++|.++.+| .+..+++|++|++++|.++.+|+... .+++|+.|++++|... ..+|..++.+++|+.|+
T Consensus 194 ~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~~l~~~~~-----~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~ 268 (317)
T 3o53_A 194 KTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALR-----FSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVA 268 (317)
T ss_dssp CEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTCC-----CCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHH
T ss_pred CEEECCCCcCCcchhhhcccCcccEEECcCCcccchhhHhh-----cCCCCCEEEccCCCccCcCHHHHHhccccceEEE
Confidence 99999999999999 99999999999999999998877654 8999999999998655 57888899999999999
Q ss_pred cccccCCC
Q 042541 682 ITNCHRLS 689 (695)
Q Consensus 682 l~~~~~l~ 689 (695)
+++|+.+.
T Consensus 269 l~~~~~l~ 276 (317)
T 3o53_A 269 KQTVKKLT 276 (317)
T ss_dssp HHHHHHHH
T ss_pred CCCchhcc
Confidence 99665444
No 116
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.07 E-value=6.1e-10 Score=123.14 Aligned_cols=153 Identities=14% Similarity=0.168 Sum_probs=121.5
Q ss_pred CccceEEeeecCCcccCCCCC-CCCCceEEEEEEccCccc--cCChhhcCCCCCcEEEEcccCCCCcccCcccccccCCC
Q 042541 526 PNNASLLSISTDETFSSNWPD-MQGPEVKVVVLNIRTKKY--VLPDFLQKMDELKVLIVTNYGFSPAELNNFRVLSALSK 602 (695)
Q Consensus 526 ~~~~r~l~~~~~~~~~~~~~~-~~~~~l~~L~l~~~~~~~--~~p~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~ 602 (695)
....+++.+.++......+.. ..+++|+.|.++.+.... .+|..+..+++|++|++++|.+... ++. ..+..+++
T Consensus 323 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~-l~~-~~~~~l~~ 400 (520)
T 2z7x_B 323 ISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYD-EKK-GDCSWTKS 400 (520)
T ss_dssp CCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCC-GGG-CSCCCCTT
T ss_pred CCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcc-ccc-chhccCcc
Confidence 456778888766543322222 378999999999986654 6778899999999999999877421 211 13678899
Q ss_pred CcEEEeccCCCC-Ccc-cccccccccEEeeccccCCcccccchhhhcccCCCccEEecccccccccCchh-hcCCCCCce
Q 042541 603 LKKIRLEHVSLP-NSL-ATVRMNHLQKVSLVMCNVGQVFRNSTFRISDAFPNLLEMDIDYCNDLIELPDG-LCDIVSMEK 679 (695)
Q Consensus 603 L~~L~L~~~~l~-~lp-~i~~l~~L~~L~l~~~~i~~~~~~~~~~l~~~l~~L~~L~l~~c~~l~~lP~~-i~~L~~L~~ 679 (695)
|++|++++|.++ .+| .+. ++|++|++++|.++.+|+..+ .+++|++|++++| .+..+|.. +..+++|+.
T Consensus 401 L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~~ip~~~~-----~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~ 472 (520)
T 2z7x_B 401 LLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIKSIPKQVV-----KLEALQELNVASN-QLKSVPDGIFDRLTSLQK 472 (520)
T ss_dssp CCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCCCCCGGGG-----GCTTCCEEECCSS-CCCCCCTTTTTTCTTCCE
T ss_pred CCEEECcCCCCCcchhhhhc--ccCCEEECCCCcccccchhhh-----cCCCCCEEECCCC-cCCccCHHHhccCCcccE
Confidence 999999999997 566 543 799999999999998888776 8999999999997 57799987 899999999
Q ss_pred eecccccCC
Q 042541 680 LRITNCHRL 688 (695)
Q Consensus 680 L~l~~~~~l 688 (695)
|++++|+..
T Consensus 473 L~l~~N~~~ 481 (520)
T 2z7x_B 473 IWLHTNPWD 481 (520)
T ss_dssp EECCSSCBC
T ss_pred EECcCCCCc
Confidence 999998743
No 117
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.06 E-value=5.2e-10 Score=111.75 Aligned_cols=127 Identities=18% Similarity=0.119 Sum_probs=103.6
Q ss_pred CCCceEEEEEEccCccccCChhhcCCCCCcEEEEcccCCCCcccCcccccccCCCCcEEEeccCCCCCcccccccccccE
Q 042541 548 QGPEVKVVVLNIRTKKYVLPDFLQKMDELKVLIVTNYGFSPAELNNFRVLSALSKLKKIRLEHVSLPNSLATVRMNHLQK 627 (695)
Q Consensus 548 ~~~~l~~L~l~~~~~~~~~p~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~lp~i~~l~~L~~ 627 (695)
.+++|+.|.++.+.. ..+| .+..+++|++|++++|.+.. + +.++.+++|++|++++|.++.+|.+.. .+|++
T Consensus 39 ~l~~L~~L~l~~n~i-~~l~-~l~~l~~L~~L~L~~N~i~~--~---~~l~~l~~L~~L~L~~N~l~~l~~~~~-~~L~~ 110 (263)
T 1xeu_A 39 ELSGVQNFNGDNSNI-QSLA-GMQFFTNLKELHLSHNQISD--L---SPLKDLTKLEELSVNRNRLKNLNGIPS-ACLSR 110 (263)
T ss_dssp HHTTCSEEECTTSCC-CCCT-TGGGCTTCCEEECCSSCCCC--C---GGGTTCSSCCEEECCSSCCSCCTTCCC-SSCCE
T ss_pred hcCcCcEEECcCCCc-ccch-HHhhCCCCCEEECCCCccCC--C---hhhccCCCCCEEECCCCccCCcCcccc-CcccE
Confidence 467889999987743 3455 68899999999999987742 2 227899999999999999999883333 99999
Q ss_pred EeeccccCCcccccchhhhcccCCCccEEecccccccccCchhhcCCCCCceeecccccCCCCC
Q 042541 628 VSLVMCNVGQVFRNSTFRISDAFPNLLEMDIDYCNDLIELPDGLCDIVSMEKLRITNCHRLSAL 691 (695)
Q Consensus 628 L~l~~~~i~~~~~~~~~~l~~~l~~L~~L~l~~c~~l~~lP~~i~~L~~L~~L~l~~~~~l~~l 691 (695)
|++++|.++.++ ... .+++|+.|++++| .+..+| .++.+++|++|++++|. +..+
T Consensus 111 L~L~~N~l~~~~-~l~-----~l~~L~~L~Ls~N-~i~~~~-~l~~l~~L~~L~L~~N~-i~~~ 165 (263)
T 1xeu_A 111 LFLDNNELRDTD-SLI-----HLKNLEILSIRNN-KLKSIV-MLGFLSKLEVLDLHGNE-ITNT 165 (263)
T ss_dssp EECCSSCCSBSG-GGT-----TCTTCCEEECTTS-CCCBCG-GGGGCTTCCEEECTTSC-CCBC
T ss_pred EEccCCccCCCh-hhc-----CcccccEEECCCC-cCCCCh-HHccCCCCCEEECCCCc-Ccch
Confidence 999999999864 333 8999999999996 577887 69999999999999976 5544
No 118
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.06 E-value=2.6e-10 Score=129.29 Aligned_cols=133 Identities=14% Similarity=0.140 Sum_probs=103.7
Q ss_pred CCCceEEEEEEccCccccCChhhcCCCCCcEEEEcccCCCCcccCcccccccCCCCcEEEeccCCCCCcc--cccccccc
Q 042541 548 QGPEVKVVVLNIRTKKYVLPDFLQKMDELKVLIVTNYGFSPAELNNFRVLSALSKLKKIRLEHVSLPNSL--ATVRMNHL 625 (695)
Q Consensus 548 ~~~~l~~L~l~~~~~~~~~p~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~lp--~i~~l~~L 625 (695)
.+++++.+.++.+......|..+..++.|++|++++|.......+ ..+..+++|++|+|++|.++.++ .++++++|
T Consensus 443 ~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~--~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L 520 (635)
T 4g8a_A 443 SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLP--DIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSL 520 (635)
T ss_dssp TCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEEC--SCCTTCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred cccccccccccccccccccccccccchhhhhhhhhhcccccccCc--hhhhhccccCEEECCCCccCCcChHHHcCCCCC
Confidence 456667777766666666677778888888888887754221111 23778899999999999999765 88899999
Q ss_pred cEEeeccccCCcccccchhhhcccCCCccEEecccccccccCchhhcCC-CCCceeeccccc
Q 042541 626 QKVSLVMCNVGQVFRNSTFRISDAFPNLLEMDIDYCNDLIELPDGLCDI-VSMEKLRITNCH 686 (695)
Q Consensus 626 ~~L~l~~~~i~~~~~~~~~~l~~~l~~L~~L~l~~c~~l~~lP~~i~~L-~~L~~L~l~~~~ 686 (695)
++|+|++|+++.+++..+. .+++|++|+|++|......|..+..+ ++|++|+|++|+
T Consensus 521 ~~L~Ls~N~l~~l~~~~~~----~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np 578 (635)
T 4g8a_A 521 QVLNMSHNNFFSLDTFPYK----CLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND 578 (635)
T ss_dssp CEEECTTSCCCBCCCGGGT----TCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCC
T ss_pred CEEECCCCcCCCCChhHHh----CCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCC
Confidence 9999999999999888776 89999999999976555556678887 689999999876
No 119
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.05 E-value=6.2e-10 Score=124.32 Aligned_cols=153 Identities=14% Similarity=0.186 Sum_probs=120.7
Q ss_pred CccceEEeeecCCcccCCCCC-CCCCceEEEEEEccCccc--cCChhhcCCCCCcEEEEcccCCCCcccCcccccccCCC
Q 042541 526 PNNASLLSISTDETFSSNWPD-MQGPEVKVVVLNIRTKKY--VLPDFLQKMDELKVLIVTNYGFSPAELNNFRVLSALSK 602 (695)
Q Consensus 526 ~~~~r~l~~~~~~~~~~~~~~-~~~~~l~~L~l~~~~~~~--~~p~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~ 602 (695)
....+++.+..+......+.. ..+++|+.|.++.+.... .+|..+.++++|++|++++|.+... ++. ..+..+++
T Consensus 352 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~-~~~-~~~~~l~~ 429 (562)
T 3a79_B 352 PSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSH-AYD-RTCAWAES 429 (562)
T ss_dssp CCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSC-CSS-CCCCCCTT
T ss_pred CCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCc-cCh-hhhcCccc
Confidence 456778887766543322222 368999999999885544 4567789999999999999877421 211 13678899
Q ss_pred CcEEEeccCCCC-Ccc-cccccccccEEeeccccCCcccccchhhhcccCCCccEEecccccccccCchh-hcCCCCCce
Q 042541 603 LKKIRLEHVSLP-NSL-ATVRMNHLQKVSLVMCNVGQVFRNSTFRISDAFPNLLEMDIDYCNDLIELPDG-LCDIVSMEK 679 (695)
Q Consensus 603 L~~L~L~~~~l~-~lp-~i~~l~~L~~L~l~~~~i~~~~~~~~~~l~~~l~~L~~L~l~~c~~l~~lP~~-i~~L~~L~~ 679 (695)
|++|++++|.++ .+| .+. ++|++|+|++|.++.+|+..+ .+++|++|++++| .+..+|.. +..+++|+.
T Consensus 430 L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~~ip~~~~-----~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~ 501 (562)
T 3a79_B 430 ILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIMSIPKDVT-----HLQALQELNVASN-QLKSVPDGVFDRLTSLQY 501 (562)
T ss_dssp CCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCCCCCTTTT-----SSCCCSEEECCSS-CCCCCCTTSTTTCTTCCC
T ss_pred CCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCcccChhhc-----CCCCCCEEECCCC-CCCCCCHHHHhcCCCCCE
Confidence 999999999997 555 443 799999999999999888877 8999999999996 57799998 999999999
Q ss_pred eecccccCC
Q 042541 680 LRITNCHRL 688 (695)
Q Consensus 680 L~l~~~~~l 688 (695)
|++++|+..
T Consensus 502 L~l~~N~~~ 510 (562)
T 3a79_B 502 IWLHDNPWD 510 (562)
T ss_dssp EECCSCCBC
T ss_pred EEecCCCcC
Confidence 999998744
No 120
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.04 E-value=4.2e-10 Score=124.88 Aligned_cols=120 Identities=18% Similarity=0.170 Sum_probs=94.9
Q ss_pred eEEEEEEccCccccCChhhcCCCCCcEEEEcccCCCCcccCcccccccCCCCcEEEeccCCCCCcccccccccccEEeec
Q 042541 552 VKVVVLNIRTKKYVLPDFLQKMDELKVLIVTNYGFSPAELNNFRVLSALSKLKKIRLEHVSLPNSLATVRMNHLQKVSLV 631 (695)
Q Consensus 552 l~~L~l~~~~~~~~~p~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~lp~i~~l~~L~~L~l~ 631 (695)
|+.|.++.|... .+|. ++.+++|++|+|++|.+. .++ +.++.|++|++|+|++|.++.+|.+++|++|++|+|+
T Consensus 443 L~~L~Ls~n~l~-~lp~-~~~l~~L~~L~Ls~N~l~--~lp--~~~~~l~~L~~L~Ls~N~l~~lp~l~~l~~L~~L~Ls 516 (567)
T 1dce_A 443 VRVLHLAHKDLT-VLCH-LEQLLLVTHLDLSHNRLR--ALP--PALAALRCLEVLQASDNALENVDGVANLPRLQELLLC 516 (567)
T ss_dssp CSEEECTTSCCS-SCCC-GGGGTTCCEEECCSSCCC--CCC--GGGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECC
T ss_pred ceEEEecCCCCC-CCcC-ccccccCcEeecCccccc--ccc--hhhhcCCCCCEEECCCCCCCCCcccCCCCCCcEEECC
Confidence 455666555433 3676 889999999999998874 333 3588999999999999999998888899999999999
Q ss_pred cccCCccc-ccchhhhcccCCCccEEecccccccccCchhh----cCCCCCceeec
Q 042541 632 MCNVGQVF-RNSTFRISDAFPNLLEMDIDYCNDLIELPDGL----CDIVSMEKLRI 682 (695)
Q Consensus 632 ~~~i~~~~-~~~~~~l~~~l~~L~~L~l~~c~~l~~lP~~i----~~L~~L~~L~l 682 (695)
+|.++.++ |..+. .|++|++|+|++| .+..+|+.+ ..+++|+.|++
T Consensus 517 ~N~l~~~~~p~~l~----~l~~L~~L~L~~N-~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 517 NNRLQQSAAIQPLV----SCPRLVLLNLQGN-SLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp SSCCCSSSTTGGGG----GCTTCCEEECTTS-GGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCCCCCCCCcHHHh----cCCCCCEEEecCC-cCCCCccHHHHHHHHCcccCccCC
Confidence 99999985 55554 8999999999996 466666543 34889999875
No 121
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.03 E-value=6.6e-10 Score=103.35 Aligned_cols=81 Identities=12% Similarity=0.198 Sum_probs=39.7
Q ss_pred CCCcEEEeccCCCCCcc--cccccccccEEeeccccCCcccccchhhhcccCCCccEEecccccccccCchh-hcCCCCC
Q 042541 601 SKLKKIRLEHVSLPNSL--ATVRMNHLQKVSLVMCNVGQVFRNSTFRISDAFPNLLEMDIDYCNDLIELPDG-LCDIVSM 677 (695)
Q Consensus 601 ~~L~~L~L~~~~l~~lp--~i~~l~~L~~L~l~~~~i~~~~~~~~~~l~~~l~~L~~L~l~~c~~l~~lP~~-i~~L~~L 677 (695)
.+|++|+|++|.+..++ .++++++|++|+|++|.++.+|+..+. .+++|++|+|++| .+..+|.+ ++.+++|
T Consensus 33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~----~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L 107 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFD----KLTQLTQLDLNDN-HLKSIPRGAFDNLKSL 107 (174)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT----TCTTCCEEECCSS-CCCCCCTTTTTTCTTC
T ss_pred CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhC----CcchhhEEECCCC-ccceeCHHHhccccCC
Confidence 34555555555555442 444555555555555555555444433 4555555555543 34444443 4455555
Q ss_pred ceeeccccc
Q 042541 678 EKLRITNCH 686 (695)
Q Consensus 678 ~~L~l~~~~ 686 (695)
++|+|++|+
T Consensus 108 ~~L~L~~N~ 116 (174)
T 2r9u_A 108 THIYLYNNP 116 (174)
T ss_dssp SEEECCSSC
T ss_pred CEEEeCCCC
Confidence 555555543
No 122
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.03 E-value=1.2e-09 Score=118.32 Aligned_cols=79 Identities=13% Similarity=0.180 Sum_probs=37.2
Q ss_pred cccCCCCcEEEeccCCCCCcccccccccccEEeecccc-CCcccccchhhhcccCCCccEEecccccccccCchhhcCCC
Q 042541 597 LSALSKLKKIRLEHVSLPNSLATVRMNHLQKVSLVMCN-VGQVFRNSTFRISDAFPNLLEMDIDYCNDLIELPDGLCDIV 675 (695)
Q Consensus 597 l~~l~~L~~L~L~~~~l~~lp~i~~l~~L~~L~l~~~~-i~~~~~~~~~~l~~~l~~L~~L~l~~c~~l~~lP~~i~~L~ 675 (695)
++.+++|++|++++|.++.+| ++++++|++|++++|. +..+ ... .+++|+.|++++| .+..+| ++.++
T Consensus 123 ~~~l~~L~~L~l~~N~l~~l~-l~~l~~L~~L~l~~n~~~~~~--~~~-----~l~~L~~L~ls~n-~l~~l~--l~~l~ 191 (457)
T 3bz5_A 123 VSQNPLLTYLNCARNTLTEID-VSHNTQLTELDCHLNKKITKL--DVT-----PQTQLTTLDCSFN-KITELD--VSQNK 191 (457)
T ss_dssp CTTCTTCCEEECTTSCCSCCC-CTTCTTCCEEECTTCSCCCCC--CCT-----TCTTCCEEECCSS-CCCCCC--CTTCT
T ss_pred CCCCCcCCEEECCCCccceec-cccCCcCCEEECCCCCccccc--ccc-----cCCcCCEEECCCC-ccceec--cccCC
Confidence 344444444444444444443 3344444444444442 2222 111 4555555555554 344454 55555
Q ss_pred CCceeeccccc
Q 042541 676 SMEKLRITNCH 686 (695)
Q Consensus 676 ~L~~L~l~~~~ 686 (695)
+|+.|++++|.
T Consensus 192 ~L~~L~l~~N~ 202 (457)
T 3bz5_A 192 LLNRLNCDTNN 202 (457)
T ss_dssp TCCEEECCSSC
T ss_pred CCCEEECcCCc
Confidence 66666665543
No 123
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.03 E-value=7.8e-10 Score=119.80 Aligned_cols=129 Identities=13% Similarity=0.110 Sum_probs=82.0
Q ss_pred CCCceEEEEEEccCccccCChhhcCCCCCcEEEEcccCCCCcccCcccccccCCCCcEEEeccCCCCCcccccccccccE
Q 042541 548 QGPEVKVVVLNIRTKKYVLPDFLQKMDELKVLIVTNYGFSPAELNNFRVLSALSKLKKIRLEHVSLPNSLATVRMNHLQK 627 (695)
Q Consensus 548 ~~~~l~~L~l~~~~~~~~~p~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~lp~i~~l~~L~~ 627 (695)
.+++|+.|.++.+.... +| +..+++|+.|++++|.+... .++.+++|++|++++|.++.+| ++.+++|++
T Consensus 168 ~l~~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~------~l~~l~~L~~L~Ls~N~l~~ip-~~~l~~L~~ 237 (457)
T 3bz5_A 168 PQTQLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNITKL------DLNQNIQLTFLDCSSNKLTEID-VTPLTQLTY 237 (457)
T ss_dssp TCTTCCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCC------CCTTCTTCSEEECCSSCCSCCC-CTTCTTCSE
T ss_pred cCCcCCEEECCCCccce-ec--cccCCCCCEEECcCCcCCee------ccccCCCCCEEECcCCcccccC-ccccCCCCE
Confidence 45666666666654333 33 56667777777776655321 1667788888888888888777 667788888
Q ss_pred EeeccccCCcccccchhhhcccCC-------CccEEecccccccccCchhhcCCCCCceeecccccCCCCCC
Q 042541 628 VSLVMCNVGQVFRNSTFRISDAFP-------NLLEMDIDYCNDLIELPDGLCDIVSMEKLRITNCHRLSALP 692 (695)
Q Consensus 628 L~l~~~~i~~~~~~~~~~l~~~l~-------~L~~L~l~~c~~l~~lP~~i~~L~~L~~L~l~~~~~l~~lP 692 (695)
|++++|.+++.|+..+. .|. +|+.|++++|..++.+| ++.+++|+.|++++|..++.+|
T Consensus 238 L~l~~N~l~~~~~~~l~----~L~~L~l~~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~ 303 (457)
T 3bz5_A 238 FDCSVNPLTELDVSTLS----KLTTLHCIQTDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLD 303 (457)
T ss_dssp EECCSSCCSCCCCTTCT----TCCEEECTTCCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEE
T ss_pred EEeeCCcCCCcCHHHCC----CCCEEeccCCCCCEEECCCCccCCccc--ccccccCCEEECCCCcccceec
Confidence 88888888777654332 232 44555555555555555 3456666666666666555554
No 124
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.01 E-value=2.2e-09 Score=110.79 Aligned_cols=178 Identities=13% Similarity=0.143 Sum_probs=113.8
Q ss_pred CCCCCCCcchHHHHHHHHHcCCceEEEEEcCCCCcHHHHHHHHhcccccc-ccCCCcEEEEEeCCCCCHHHHHHHHHHhc
Q 042541 165 PVISPGLDVPLKELKMELFKDGRQFIVVSAPGGYGKTTLVQRLCKDDQVQ-GKFKDDIFYVTVSKNPNVKAIVQKVLHHK 243 (695)
Q Consensus 165 ~~~~vGr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~-~~f~~~~~wv~~~~~~~~~~~~~~i~~~l 243 (695)
-..++|++..++.+..++..+..+.+.|+|++|+||||+|+.+++. +. ..+...+++++.+.......+ ++++..+
T Consensus 20 ~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~--l~~~~~~~~~~~~~~~~~~~~~~i-~~~~~~~ 96 (323)
T 1sxj_B 20 LSDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHE--LLGRSYADGVLELNASDDRGIDVV-RNQIKHF 96 (323)
T ss_dssp GGGCCSCTHHHHHHHHHHHSCCCCCEEEECSTTSSHHHHHHHHHHH--HHGGGHHHHEEEECTTSCCSHHHH-HTHHHHH
T ss_pred HHHHHCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHH--hcCCcccCCEEEecCccccChHHH-HHHHHHH
Confidence 3568999999999999998776555999999999999999999873 31 122222444444433232221 1122111
Q ss_pred CCCCCCCCChHHHHHHHHHHHHhc-CCCcEEEEEeCCCCCChH----HHhhhccCCCCCEEEEEcCCCCC------CCCC
Q 042541 244 GYPVPEFQTDEAAINDLERFFKQM-RIEAILLVLDDVWPGSES----LLQKLGFQLPDYKILVTSRSEFP------QFGS 312 (695)
Q Consensus 244 ~~~~~~~~~~~~~~~~l~~~~~~l-~~~~~LlVlDdv~~~~~~----~~~~l~~~~~gs~iivTtR~~~~------~~~~ 312 (695)
... ...+ .+++.++|+||++..... ++..+....+++.+|+||..... ....
T Consensus 97 ~~~-----------------~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~sr~~ 159 (323)
T 1sxj_B 97 AQK-----------------KLHLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQCA 159 (323)
T ss_dssp HHB-----------------CCCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSE
T ss_pred Hhc-----------------cccCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHHhhce
Confidence 100 0011 356899999999876543 23333334456788888865421 1223
Q ss_pred eEecCCCChHHHHHHHHHhccCCCCCCCCCchHHHHHHHHhcCCchhH-HHHHH
Q 042541 313 VHYLKPLTYEAARTLFLHSANLQDGNSYIPDENIVSKILRACKGCPLA-LKVVG 365 (695)
Q Consensus 313 ~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLa-i~~~~ 365 (695)
.+.+.+++.++..+++...+..... .-.++.+..|++.|+|.|.. +..+.
T Consensus 160 ~i~~~~~~~~~~~~~l~~~~~~~~~---~~~~~~~~~l~~~~~G~~r~a~~~l~ 210 (323)
T 1sxj_B 160 ILRYSKLSDEDVLKRLLQIIKLEDV---KYTNDGLEAIIFTAEGDMRQAINNLQ 210 (323)
T ss_dssp EEECCCCCHHHHHHHHHHHHHHHTC---CBCHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred EEeecCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 8999999999999999887643221 12356788999999999954 44443
No 125
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.01 E-value=1.4e-11 Score=117.67 Aligned_cols=109 Identities=12% Similarity=0.165 Sum_probs=54.6
Q ss_pred CChhhcCCCCCcEEEEcccCCCCcccCcccccccCCCCcEEEeccCCCCCcc-cccccccccEEeeccccCCcccccchh
Q 042541 566 LPDFLQKMDELKVLIVTNYGFSPAELNNFRVLSALSKLKKIRLEHVSLPNSL-ATVRMNHLQKVSLVMCNVGQVFRNSTF 644 (695)
Q Consensus 566 ~p~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~lp-~i~~l~~L~~L~l~~~~i~~~~~~~~~ 644 (695)
+|..+..+++|++|++++|.+.. ++ .+..+++|++|++++|.+..+| .++.+++|++|++++|.++.+| .. .
T Consensus 40 l~~~~~~l~~L~~L~ls~n~l~~--l~---~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~-~ 112 (198)
T 1ds9_A 40 MDATLSTLKACKHLALSTNNIEK--IS---SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS-GI-E 112 (198)
T ss_dssp CHHHHHHTTTCSEEECSEEEESC--CC---CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHH-HH-H
T ss_pred hhHHHhcCCCCCEEECCCCCCcc--cc---ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCC-cc-c
Confidence 33355555555555555554421 11 3455555555555555555555 4445555555555555555533 22 1
Q ss_pred hhcccCCCccEEecccccccccCch--hhcCCCCCceeeccccc
Q 042541 645 RISDAFPNLLEMDIDYCNDLIELPD--GLCDIVSMEKLRITNCH 686 (695)
Q Consensus 645 ~l~~~l~~L~~L~l~~c~~l~~lP~--~i~~L~~L~~L~l~~~~ 686 (695)
.+++|++|++++| .+..+|. .+..+++|++|++++|+
T Consensus 113 ----~l~~L~~L~l~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~ 151 (198)
T 1ds9_A 113 ----KLVNLRVLYMSNN-KITNWGEIDKLAALDKLEDLLLAGNP 151 (198)
T ss_dssp ----HHHHSSEEEESEE-ECCCHHHHHHHTTTTTCSEEEECSCH
T ss_pred ----cCCCCCEEECCCC-cCCchhHHHHHhcCCCCCEEEecCCc
Confidence 4555555555553 2344432 45555555555555544
No 126
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.01 E-value=5.8e-11 Score=123.42 Aligned_cols=155 Identities=17% Similarity=0.204 Sum_probs=114.8
Q ss_pred CccceEEeeecCCcccC-CC-CCCCCCceEEEEEEccCccccCChhhcCCCCCcEEEEccc-CCCCcccCcccccccCCC
Q 042541 526 PNNASLLSISTDETFSS-NW-PDMQGPEVKVVVLNIRTKKYVLPDFLQKMDELKVLIVTNY-GFSPAELNNFRVLSALSK 602 (695)
Q Consensus 526 ~~~~r~l~~~~~~~~~~-~~-~~~~~~~l~~L~l~~~~~~~~~p~~~~~l~~Lr~L~l~~~-~~~~~~~~~~~~l~~l~~ 602 (695)
....+++.+.+...... .+ ....+++|+.|.++.+......|..+..+++|++|++++| .+....++ ..+..+++
T Consensus 92 ~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~--~~~~~~~~ 169 (336)
T 2ast_B 92 PFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQ--TLLSSCSR 169 (336)
T ss_dssp CBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHH--HHHHHCTT
T ss_pred CCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHH--HHHhcCCC
Confidence 35677787766542111 11 1136789999999888766677788889999999999988 44322222 22678999
Q ss_pred CcEEEeccC-CCCC--cc-cccccc-cccEEeecccc--CC-cccccchhhhcccCCCccEEeccccccc-ccCchhhcC
Q 042541 603 LKKIRLEHV-SLPN--SL-ATVRMN-HLQKVSLVMCN--VG-QVFRNSTFRISDAFPNLLEMDIDYCNDL-IELPDGLCD 673 (695)
Q Consensus 603 L~~L~L~~~-~l~~--lp-~i~~l~-~L~~L~l~~~~--i~-~~~~~~~~~l~~~l~~L~~L~l~~c~~l-~~lP~~i~~ 673 (695)
|++|++++| .++. +| .++.++ +|++|++++|. ++ ...+..+. .+++|+.|++++|..+ ...|..+++
T Consensus 170 L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~----~~~~L~~L~l~~~~~l~~~~~~~l~~ 245 (336)
T 2ast_B 170 LDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVR----RCPNLVHLDLSDSVMLKNDCFQEFFQ 245 (336)
T ss_dssp CCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHH----HCTTCSEEECTTCTTCCGGGGGGGGG
T ss_pred CCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHh----hCCCCCEEeCCCCCcCCHHHHHHHhC
Confidence 999999999 8883 67 788999 99999999994 43 22233333 7999999999998744 466778999
Q ss_pred CCCCceeeccccc
Q 042541 674 IVSMEKLRITNCH 686 (695)
Q Consensus 674 L~~L~~L~l~~~~ 686 (695)
+++|++|++++|.
T Consensus 246 l~~L~~L~l~~~~ 258 (336)
T 2ast_B 246 LNYLQHLSLSRCY 258 (336)
T ss_dssp CTTCCEEECTTCT
T ss_pred CCCCCEeeCCCCC
Confidence 9999999999986
No 127
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.01 E-value=1.6e-09 Score=118.00 Aligned_cols=150 Identities=13% Similarity=0.157 Sum_probs=101.8
Q ss_pred ccceEEeeecCCcccCCCCCCCCCceEEEEEEccCccccCChhhcCCCCCcEEEEcccCCCCcccCcccccccCCCCcEE
Q 042541 527 NNASLLSISTDETFSSNWPDMQGPEVKVVVLNIRTKKYVLPDFLQKMDELKVLIVTNYGFSPAELNNFRVLSALSKLKKI 606 (695)
Q Consensus 527 ~~~r~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~p~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L 606 (695)
...+++.+..+.... ......+++|+.|.++.+..... |. +..+++|+.|++++|.+.. .+.++.+++|++|
T Consensus 243 ~~L~~L~l~~n~l~~-~~~~~~l~~L~~L~l~~n~l~~~-~~-~~~l~~L~~L~L~~n~l~~-----~~~~~~l~~L~~L 314 (466)
T 1o6v_A 243 TNLTDLDLANNQISN-LAPLSGLTKLTELKLGANQISNI-SP-LAGLTALTNLELNENQLED-----ISPISNLKNLTYL 314 (466)
T ss_dssp TTCSEEECCSSCCCC-CGGGTTCTTCSEEECCSSCCCCC-GG-GTTCTTCSEEECCSSCCSC-----CGGGGGCTTCSEE
T ss_pred CCCCEEECCCCcccc-chhhhcCCCCCEEECCCCccCcc-cc-ccCCCccCeEEcCCCcccC-----chhhcCCCCCCEE
Confidence 345566655443211 11233567788888877654433 32 6778888888888776532 2226778888888
Q ss_pred EeccCCCCCcccccccccccEEeeccccCCcccccchhhhcccCCCccEEecccccccccCchhhcCCCCCceeeccccc
Q 042541 607 RLEHVSLPNSLATVRMNHLQKVSLVMCNVGQVFRNSTFRISDAFPNLLEMDIDYCNDLIELPDGLCDIVSMEKLRITNCH 686 (695)
Q Consensus 607 ~L~~~~l~~lp~i~~l~~L~~L~l~~~~i~~~~~~~~~~l~~~l~~L~~L~l~~c~~l~~lP~~i~~L~~L~~L~l~~~~ 686 (695)
++++|.+..++.++.+++|++|++++|.++..+ ... .+++|+.|++++|.. ..++. +..+++|+.|++++|.
T Consensus 315 ~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~-~l~-----~l~~L~~L~l~~n~l-~~~~~-~~~l~~L~~L~l~~n~ 386 (466)
T 1o6v_A 315 TLYFNNISDISPVSSLTKLQRLFFYNNKVSDVS-SLA-----NLTNINWLSAGHNQI-SDLTP-LANLTRITQLGLNDQA 386 (466)
T ss_dssp ECCSSCCSCCGGGGGCTTCCEEECCSSCCCCCG-GGT-----TCTTCCEEECCSSCC-CBCGG-GTTCTTCCEEECCCEE
T ss_pred ECcCCcCCCchhhccCccCCEeECCCCccCCch-hhc-----cCCCCCEEeCCCCcc-Cccch-hhcCCCCCEEeccCCc
Confidence 888888876665678888888888888887763 332 788899999988754 44444 8888999999998876
Q ss_pred CCCCCCC
Q 042541 687 RLSALPE 693 (695)
Q Consensus 687 ~l~~lP~ 693 (695)
+..+|.
T Consensus 387 -~~~~p~ 392 (466)
T 1o6v_A 387 -WTNAPV 392 (466)
T ss_dssp -EECCCB
T ss_pred -ccCCch
Confidence 444443
No 128
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.00 E-value=1.7e-09 Score=102.43 Aligned_cols=106 Identities=19% Similarity=0.275 Sum_probs=88.1
Q ss_pred cEEEEcccCCCCcccCcccccccCCCCcEEEeccCCCCCcc-cccccccccEEeeccccCCcccccchhhhcccCCCccE
Q 042541 577 KVLIVTNYGFSPAELNNFRVLSALSKLKKIRLEHVSLPNSL-ATVRMNHLQKVSLVMCNVGQVFRNSTFRISDAFPNLLE 655 (695)
Q Consensus 577 r~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~lp-~i~~l~~L~~L~l~~~~i~~~~~~~~~~l~~~l~~L~~ 655 (695)
++++++++++. .++. +-..+|++|+|++|.++.+| .+.++++|++|+|++|.++.+++..+. .+++|++
T Consensus 13 ~~l~~~~~~l~--~ip~----~~~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~----~l~~L~~ 82 (193)
T 2wfh_A 13 TVVRCSNKGLK--VLPK----GIPRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFS----NMTQLLT 82 (193)
T ss_dssp TEEECTTSCCS--SCCS----CCCTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTT----TCTTCCE
T ss_pred CEEEcCCCCCC--cCCC----CCCCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHcc----CCCCCCE
Confidence 57888877653 2221 12357999999999999999 999999999999999999999988776 8999999
Q ss_pred EecccccccccCch-hhcCCCCCceeecccccCCCCCCCC
Q 042541 656 MDIDYCNDLIELPD-GLCDIVSMEKLRITNCHRLSALPEG 694 (695)
Q Consensus 656 L~l~~c~~l~~lP~-~i~~L~~L~~L~l~~~~~l~~lP~~ 694 (695)
|+|++|. +..+|. .|+.+++|++|+|++|. +..+|.+
T Consensus 83 L~Ls~N~-l~~i~~~~f~~l~~L~~L~L~~N~-l~~~~~~ 120 (193)
T 2wfh_A 83 LILSYNR-LRCIPPRTFDGLKSLRLLSLHGND-ISVVPEG 120 (193)
T ss_dssp EECCSSC-CCBCCTTTTTTCTTCCEEECCSSC-CCBCCTT
T ss_pred EECCCCc-cCEeCHHHhCCCCCCCEEECCCCC-CCeeChh
Confidence 9999965 666664 69999999999999965 8888864
No 129
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=98.99 E-value=1.4e-10 Score=120.46 Aligned_cols=152 Identities=14% Similarity=0.170 Sum_probs=111.9
Q ss_pred CccceEEeeecCCcccCCCC-CCCCCceEEEEEEcc-Cccc-cCChhhcCCCCCcEEEEccc-CCCCcccCcccccccCC
Q 042541 526 PNNASLLSISTDETFSSNWP-DMQGPEVKVVVLNIR-TKKY-VLPDFLQKMDELKVLIVTNY-GFSPAELNNFRVLSALS 601 (695)
Q Consensus 526 ~~~~r~l~~~~~~~~~~~~~-~~~~~~l~~L~l~~~-~~~~-~~p~~~~~l~~Lr~L~l~~~-~~~~~~~~~~~~l~~l~ 601 (695)
....++|.+.+.......+. -..+++|+.|.++.+ .... .+|..+.++++|++|++++| .+....++ ..+..++
T Consensus 117 ~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~--~~~~~l~ 194 (336)
T 2ast_B 117 CSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQ--VAVAHVS 194 (336)
T ss_dssp BCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHH--HHHHHSC
T ss_pred CCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHH--HHHHhcc
Confidence 45778888876542211111 125899999999988 3443 46777889999999999998 66432222 2377899
Q ss_pred -CCcEEEeccC--CCC--Ccc-cccccccccEEeecccc-CCcccccchhhhcccCCCccEEecccccccccCch---hh
Q 042541 602 -KLKKIRLEHV--SLP--NSL-ATVRMNHLQKVSLVMCN-VGQVFRNSTFRISDAFPNLLEMDIDYCNDLIELPD---GL 671 (695)
Q Consensus 602 -~L~~L~L~~~--~l~--~lp-~i~~l~~L~~L~l~~~~-i~~~~~~~~~~l~~~l~~L~~L~l~~c~~l~~lP~---~i 671 (695)
+|++|++++| .++ .+| .++++++|++|++++|. ++...+..+. .+++|++|++++|..+ .|. .+
T Consensus 195 ~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~----~l~~L~~L~l~~~~~~--~~~~~~~l 268 (336)
T 2ast_B 195 ETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFF----QLNYLQHLSLSRCYDI--IPETLLEL 268 (336)
T ss_dssp TTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGG----GCTTCCEEECTTCTTC--CGGGGGGG
T ss_pred cCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHh----CCCCCCEeeCCCCCCC--CHHHHHHH
Confidence 9999999999 454 677 88899999999999998 6544333344 8999999999998632 333 58
Q ss_pred cCCCCCceeecccc
Q 042541 672 CDIVSMEKLRITNC 685 (695)
Q Consensus 672 ~~L~~L~~L~l~~~ 685 (695)
+++++|+.|++++|
T Consensus 269 ~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 269 GEIPTLKTLQVFGI 282 (336)
T ss_dssp GGCTTCCEEECTTS
T ss_pred hcCCCCCEEeccCc
Confidence 88999999999998
No 130
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.99 E-value=1.4e-09 Score=100.84 Aligned_cols=81 Identities=12% Similarity=0.172 Sum_probs=43.7
Q ss_pred CCCcEEEeccCCCCCcc--cccccccccEEeeccccCCcccccchhhhcccCCCccEEecccccccccCchh-hcCCCCC
Q 042541 601 SKLKKIRLEHVSLPNSL--ATVRMNHLQKVSLVMCNVGQVFRNSTFRISDAFPNLLEMDIDYCNDLIELPDG-LCDIVSM 677 (695)
Q Consensus 601 ~~L~~L~L~~~~l~~lp--~i~~l~~L~~L~l~~~~i~~~~~~~~~~l~~~l~~L~~L~l~~c~~l~~lP~~-i~~L~~L 677 (695)
.+|++|+|++|.++.++ .++++++|++|+|++|.++.+++..+. .+++|++|+|++| .+..+|.. +.++++|
T Consensus 30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~----~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L 104 (170)
T 3g39_A 30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFD----KLTQLTQLSLNDN-QLKSIPRGAFDNLKSL 104 (170)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTT----TCTTCCEEECCSS-CCCCCCTTTTTTCTTC
T ss_pred CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhcc----CCCCCCEEECCCC-ccCEeCHHHhcCCCCC
Confidence 44555555555555443 455555555555555555555555443 5555555555553 34444443 5555555
Q ss_pred ceeeccccc
Q 042541 678 EKLRITNCH 686 (695)
Q Consensus 678 ~~L~l~~~~ 686 (695)
++|+|++|+
T Consensus 105 ~~L~L~~N~ 113 (170)
T 3g39_A 105 THIWLLNNP 113 (170)
T ss_dssp CEEECCSSC
T ss_pred CEEEeCCCC
Confidence 555555544
No 131
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.96 E-value=2.2e-09 Score=118.55 Aligned_cols=149 Identities=9% Similarity=0.060 Sum_probs=98.9
Q ss_pred CccceEEeeecCCcccCCCCCCCCCceEEEEEEccCccccCChhhcCCCCCcEEEEcccCCCCcccCcccccccCCCCcE
Q 042541 526 PNNASLLSISTDETFSSNWPDMQGPEVKVVVLNIRTKKYVLPDFLQKMDELKVLIVTNYGFSPAELNNFRVLSALSKLKK 605 (695)
Q Consensus 526 ~~~~r~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~p~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~ 605 (695)
....++|.+.++.... .+. -..+|+.|.++.|.... +|. .+++|++|++++|.+.. ++. .+++|++
T Consensus 99 l~~L~~L~Ls~N~l~~-ip~--l~~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~--lp~-----~l~~L~~ 164 (571)
T 3cvr_A 99 PASLEYLDACDNRLST-LPE--LPASLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM--LPE-----LPTSLEV 164 (571)
T ss_dssp CTTCCEEECCSSCCSC-CCC--CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC--CCC-----CCTTCCE
T ss_pred cCCCCEEEccCCCCCC-cch--hhcCCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCc--CCC-----cCCCcCE
Confidence 3456666665543222 111 12267777777765444 555 56778888888776632 221 4678889
Q ss_pred EEeccCCCCCcccccccccccEEeeccccCCcccccchhhhcccCCCccEEecccccccccCchhhcCCCCCceeecccc
Q 042541 606 IRLEHVSLPNSLATVRMNHLQKVSLVMCNVGQVFRNSTFRISDAFPNLLEMDIDYCNDLIELPDGLCDIVSMEKLRITNC 685 (695)
Q Consensus 606 L~L~~~~l~~lp~i~~l~~L~~L~l~~~~i~~~~~~~~~~l~~~l~~L~~L~l~~c~~l~~lP~~i~~L~~L~~L~l~~~ 685 (695)
|+|++|.++.+|.++ ++|++|+|++|.|+.+|+ +...+....+.|+.|+|++| .+..+|.+++++++|+.|+|++|
T Consensus 165 L~Ls~N~L~~lp~l~--~~L~~L~Ls~N~L~~lp~-~~~~L~~~~~~L~~L~Ls~N-~l~~lp~~l~~l~~L~~L~L~~N 240 (571)
T 3cvr_A 165 LSVRNNQLTFLPELP--ESLEALDVSTNLLESLPA-VPVRNHHSEETEIFFRCREN-RITHIPENILSLDPTCTIILEDN 240 (571)
T ss_dssp EECCSSCCSCCCCCC--TTCCEEECCSSCCSSCCC-CC--------CCEEEECCSS-CCCCCCGGGGGSCTTEEEECCSS
T ss_pred EECCCCCCCCcchhh--CCCCEEECcCCCCCchhh-HHHhhhcccccceEEecCCC-cceecCHHHhcCCCCCEEEeeCC
Confidence 999998888888533 789999999999887776 33111111233399999986 67889999999999999999998
Q ss_pred cCCCCCC
Q 042541 686 HRLSALP 692 (695)
Q Consensus 686 ~~l~~lP 692 (695)
+..+.+|
T Consensus 241 ~l~~~~p 247 (571)
T 3cvr_A 241 PLSSRIR 247 (571)
T ss_dssp SCCHHHH
T ss_pred cCCCcCH
Confidence 7555444
No 132
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.96 E-value=5.1e-09 Score=109.31 Aligned_cols=126 Identities=16% Similarity=0.226 Sum_probs=63.3
Q ss_pred cCccccCChhhcCCCCCcEEEEcccCCCCcccCcccccccCCCCcEEEecc-CCCCCcc--cccccc-cccEEeeccccC
Q 042541 560 RTKKYVLPDFLQKMDELKVLIVTNYGFSPAELNNFRVLSALSKLKKIRLEH-VSLPNSL--ATVRMN-HLQKVSLVMCNV 635 (695)
Q Consensus 560 ~~~~~~~p~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~-~~l~~lp--~i~~l~-~L~~L~l~~~~i 635 (695)
+......|..|..+++|++|++++|.+... +.. .+....++..|++.+ +.+..+| .+..+. .|++|+|++|.+
T Consensus 90 N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~--~~~-~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i 166 (350)
T 4ay9_X 90 NNLLYINPEAFQNLPNLQYLLISNTGIKHL--PDV-HKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGI 166 (350)
T ss_dssp TTCCEECTTSBCCCTTCCEEEEEEECCSSC--CCC-TTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCC
T ss_pred CcccccCchhhhhccccccccccccccccC--Cch-hhcccchhhhhhhccccccccccccchhhcchhhhhhccccccc
Confidence 333333455666777777777777654311 110 011222333444432 2333333 233332 355566666666
Q ss_pred CcccccchhhhcccCCCccEEecccccccccCchh-hcCCCCCceeecccccCCCCCCCC
Q 042541 636 GQVFRNSTFRISDAFPNLLEMDIDYCNDLIELPDG-LCDIVSMEKLRITNCHRLSALPEG 694 (695)
Q Consensus 636 ~~~~~~~~~~l~~~l~~L~~L~l~~c~~l~~lP~~-i~~L~~L~~L~l~~~~~l~~lP~~ 694 (695)
+.+++..+ ..++|+.|++.+|+.++.+|.. |..+++|+.|++++|. +..+|.+
T Consensus 167 ~~i~~~~f-----~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~-l~~lp~~ 220 (350)
T 4ay9_X 167 QEIHNSAF-----NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTR-IHSLPSY 220 (350)
T ss_dssp CEECTTSS-----TTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSC-CCCCCSS
T ss_pred cCCChhhc-----cccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCC-cCccChh
Confidence 65555555 4555666666655566666643 4566666666666643 5555543
No 133
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.96 E-value=4e-09 Score=98.39 Aligned_cols=113 Identities=14% Similarity=0.103 Sum_probs=92.5
Q ss_pred CCceEEEEEEccCccccCChhhcCCCCCcEEEEcccCCCCcccCcccccccCCCCcEEEeccCCCCCcc--ccccccccc
Q 042541 549 GPEVKVVVLNIRTKKYVLPDFLQKMDELKVLIVTNYGFSPAELNNFRVLSALSKLKKIRLEHVSLPNSL--ATVRMNHLQ 626 (695)
Q Consensus 549 ~~~l~~L~l~~~~~~~~~p~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~lp--~i~~l~~L~ 626 (695)
.++++.|.++.+......+..+..+++|++|++++|.+.. ++ ...++.+++|++|++++|.++.+| .++++++|+
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--~~-~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~ 103 (177)
T 2o6r_A 27 PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQS--LP-DGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLK 103 (177)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCC--CC-TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceE--eC-hhHccCCCccCEEECCCCCccccCHHHhhCCcccC
Confidence 4688999998887665555678999999999999987742 11 122678999999999999999888 578999999
Q ss_pred EEeeccccCCcccccchhhhcccCCCccEEecccccccccCc
Q 042541 627 KVSLVMCNVGQVFRNSTFRISDAFPNLLEMDIDYCNDLIELP 668 (695)
Q Consensus 627 ~L~l~~~~i~~~~~~~~~~l~~~l~~L~~L~l~~c~~l~~lP 668 (695)
+|++++|.++.+|+..+. .+++|++|++++|......|
T Consensus 104 ~L~l~~N~l~~~~~~~~~----~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 104 ELALDTNQLKSVPDGIFD----RLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp EEECCSSCCSCCCTTTTT----TCTTCCEEECCSSCBCCCHH
T ss_pred EEECcCCcceEeCHHHhc----CCcccCEEEecCCCeeccCc
Confidence 999999999999988765 79999999999976544433
No 134
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.95 E-value=1.7e-09 Score=119.55 Aligned_cols=139 Identities=18% Similarity=0.126 Sum_probs=101.1
Q ss_pred ccceEEeeecCCcccCCCCCCCCCceEEEEEEccCccccCChhhcCCCCCcEEEEcccCCCCcccCcccccccCCCCcEE
Q 042541 527 NNASLLSISTDETFSSNWPDMQGPEVKVVVLNIRTKKYVLPDFLQKMDELKVLIVTNYGFSPAELNNFRVLSALSKLKKI 606 (695)
Q Consensus 527 ~~~r~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~p~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L 606 (695)
...+.|.+.++... ..+ ..+++|+.|.++.|.... +|. +.+ +|++|++++|.+.. ++. .+++|++|
T Consensus 80 ~~L~~L~Ls~N~l~-~ip--~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~--lp~-----~l~~L~~L 145 (571)
T 3cvr_A 80 PQITVLEITQNALI-SLP--ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQLTM--LPE-----LPALLEYI 145 (571)
T ss_dssp TTCSEEECCSSCCS-CCC--CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSSCCSC--CCC-----CCTTCCEE
T ss_pred CCCCEEECcCCCCc-ccc--cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCCCcCCC--CCC-----cCccccEE
Confidence 45777777665433 222 356888999888886554 666 554 89999999887642 222 57889999
Q ss_pred EeccCCCCCcccccccccccEEeeccccCCcccccchhhhcccCCCccEEecccccccccCchhhcCCCCC-------ce
Q 042541 607 RLEHVSLPNSLATVRMNHLQKVSLVMCNVGQVFRNSTFRISDAFPNLLEMDIDYCNDLIELPDGLCDIVSM-------EK 679 (695)
Q Consensus 607 ~L~~~~l~~lp~i~~l~~L~~L~l~~~~i~~~~~~~~~~l~~~l~~L~~L~l~~c~~l~~lP~~i~~L~~L-------~~ 679 (695)
+|++|.++.+|. .+++|++|+|++|.++.+|+ + . ++|+.|+|++| .+..+|. +.. +| +.
T Consensus 146 ~Ls~N~l~~lp~--~l~~L~~L~Ls~N~L~~lp~--l-----~-~~L~~L~Ls~N-~L~~lp~-~~~--~L~~~~~~L~~ 211 (571)
T 3cvr_A 146 NADNNQLTMLPE--LPTSLEVLSVRNNQLTFLPE--L-----P-ESLEALDVSTN-LLESLPA-VPV--RNHHSEETEIF 211 (571)
T ss_dssp ECCSSCCSCCCC--CCTTCCEEECCSSCCSCCCC--C-----C-TTCCEEECCSS-CCSSCCC-CC----------CCEE
T ss_pred eCCCCccCcCCC--cCCCcCEEECCCCCCCCcch--h-----h-CCCCEEECcCC-CCCchhh-HHH--hhhcccccceE
Confidence 999999888884 56789999999998888666 4 4 78999999986 5778887 655 77 99
Q ss_pred eecccccCCCCCCCC
Q 042541 680 LRITNCHRLSALPEG 694 (695)
Q Consensus 680 L~l~~~~~l~~lP~~ 694 (695)
|+|++|. +..+|.+
T Consensus 212 L~Ls~N~-l~~lp~~ 225 (571)
T 3cvr_A 212 FRCRENR-ITHIPEN 225 (571)
T ss_dssp EECCSSC-CCCCCGG
T ss_pred EecCCCc-ceecCHH
Confidence 9998865 7788864
No 135
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=98.92 E-value=7.9e-09 Score=111.75 Aligned_cols=143 Identities=17% Similarity=0.120 Sum_probs=79.4
Q ss_pred ccceEEeeecCCcccCCCCCCCCCceEEEEEEccCccccCChhhcCCCCCcEEEEcccCCCCcccCcccccccCCCCcEE
Q 042541 527 NNASLLSISTDETFSSNWPDMQGPEVKVVVLNIRTKKYVLPDFLQKMDELKVLIVTNYGFSPAELNNFRVLSALSKLKKI 606 (695)
Q Consensus 527 ~~~r~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~p~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L 606 (695)
...+++.+..+.... .. ...++|+.|.++.+.... +| .++++++|++|++++|.+.. ++. ...+|++|
T Consensus 111 ~~L~~L~l~~n~l~~-l~--~~~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~--lp~-----~~~~L~~L 178 (454)
T 1jl5_A 111 QSLKSLLVDNNNLKA-LS--DLPPLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK--LPD-----LPPSLEFI 178 (454)
T ss_dssp TTCCEEECCSSCCSC-CC--SCCTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC--CCC-----CCTTCCEE
T ss_pred CCCcEEECCCCccCc-cc--CCCCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc--cCC-----CcccccEE
Confidence 455666665443211 10 112577777777765543 66 47778888888888776532 211 12356666
Q ss_pred EeccCCCCCcccccccccccEEeeccccCCcccccchhhhcccCCCccEEecccccccccCchhhcCCCCCceeeccccc
Q 042541 607 RLEHVSLPNSLATVRMNHLQKVSLVMCNVGQVFRNSTFRISDAFPNLLEMDIDYCNDLIELPDGLCDIVSMEKLRITNCH 686 (695)
Q Consensus 607 ~L~~~~l~~lp~i~~l~~L~~L~l~~~~i~~~~~~~~~~l~~~l~~L~~L~l~~c~~l~~lP~~i~~L~~L~~L~l~~~~ 686 (695)
++++|.+..+|.++++++|++|++++|.++++|. ..++|++|++++| .+..+|. ++.+++|++|++++|.
T Consensus 179 ~L~~n~l~~l~~~~~l~~L~~L~l~~N~l~~l~~--------~~~~L~~L~l~~n-~l~~lp~-~~~l~~L~~L~l~~N~ 248 (454)
T 1jl5_A 179 AAGNNQLEELPELQNLPFLTAIYADNNSLKKLPD--------LPLSLESIVAGNN-ILEELPE-LQNLPFLTTIYADNNL 248 (454)
T ss_dssp ECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCCC--------CCTTCCEEECCSS-CCSSCCC-CTTCTTCCEEECCSSC
T ss_pred ECcCCcCCcCccccCCCCCCEEECCCCcCCcCCC--------CcCcccEEECcCC-cCCcccc-cCCCCCCCEEECCCCc
Confidence 6666666665555666666666666666655432 2235555555554 3345553 5555555555555543
Q ss_pred CCCCCC
Q 042541 687 RLSALP 692 (695)
Q Consensus 687 ~l~~lP 692 (695)
+..+|
T Consensus 249 -l~~l~ 253 (454)
T 1jl5_A 249 -LKTLP 253 (454)
T ss_dssp -CSSCC
T ss_pred -CCccc
Confidence 44444
No 136
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.91 E-value=7.2e-11 Score=112.63 Aligned_cols=124 Identities=10% Similarity=0.123 Sum_probs=100.5
Q ss_pred CCCceEEEEEEccCccccCChhhcCCCCCcEEEEcccCCCCcccCcccccccCCCCcEEEeccCCCCCcccccccccccE
Q 042541 548 QGPEVKVVVLNIRTKKYVLPDFLQKMDELKVLIVTNYGFSPAELNNFRVLSALSKLKKIRLEHVSLPNSLATVRMNHLQK 627 (695)
Q Consensus 548 ~~~~l~~L~l~~~~~~~~~p~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~lp~i~~l~~L~~ 627 (695)
.+++|+.|.++.+.... +| .+..+++|++|++++|.+. .++. .+..+++|++|++++|.+..+|.++.+++|++
T Consensus 46 ~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~--~l~~--~~~~~~~L~~L~L~~N~l~~l~~~~~l~~L~~ 119 (198)
T 1ds9_A 46 TLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK--KIEN--LDAVADTLEELWISYNQIASLSGIEKLVNLRV 119 (198)
T ss_dssp HTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC--SCSS--HHHHHHHCSEEEEEEEECCCHHHHHHHHHSSE
T ss_pred cCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc--cccc--hhhcCCcCCEEECcCCcCCcCCccccCCCCCE
Confidence 56789999998875444 67 8899999999999998774 3332 35677899999999999999888889999999
Q ss_pred EeeccccCCcccc-cchhhhcccCCCccEEecccccccccCchh----------hcCCCCCceee
Q 042541 628 VSLVMCNVGQVFR-NSTFRISDAFPNLLEMDIDYCNDLIELPDG----------LCDIVSMEKLR 681 (695)
Q Consensus 628 L~l~~~~i~~~~~-~~~~~l~~~l~~L~~L~l~~c~~l~~lP~~----------i~~L~~L~~L~ 681 (695)
|++++|.++.+++ ..+. .+++|++|++++|......|.. +..+++|+.|+
T Consensus 120 L~l~~N~i~~~~~~~~l~----~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 120 LYMSNNKITNWGEIDKLA----ALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp EEESEEECCCHHHHHHHT----TTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred EECCCCcCCchhHHHHHh----cCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence 9999999998765 3333 8999999999998654444432 88999999998
No 137
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=98.90 E-value=5.4e-09 Score=113.79 Aligned_cols=146 Identities=14% Similarity=0.145 Sum_probs=109.9
Q ss_pred ccceEEeeecCCcccCCCCCCCCCceEEEEEEccCccccCChhhcCCCCCcEEEEcccCCCCcccCcccccccCCCCcEE
Q 042541 527 NNASLLSISTDETFSSNWPDMQGPEVKVVVLNIRTKKYVLPDFLQKMDELKVLIVTNYGFSPAELNNFRVLSALSKLKKI 606 (695)
Q Consensus 527 ~~~r~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~p~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L 606 (695)
...+.+.+..+.... ......+++|+.|.++.+......| +..+++|+.|++++|.+.. .+.+..+++|++|
T Consensus 221 ~~L~~L~l~~n~l~~-~~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-----~~~~~~l~~L~~L 292 (466)
T 1o6v_A 221 TNLDELSLNGNQLKD-IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISN-----ISPLAGLTALTNL 292 (466)
T ss_dssp TTCCEEECCSSCCCC-CGGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCC-----CGGGTTCTTCSEE
T ss_pred CCCCEEECCCCCccc-chhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCc-----cccccCCCccCeE
Confidence 456666665543211 1122357888888888775544333 7888899999998886642 1227788999999
Q ss_pred EeccCCCCCcccccccccccEEeeccccCCcccccchhhhcccCCCccEEecccccccccCchhhcCCCCCceeeccccc
Q 042541 607 RLEHVSLPNSLATVRMNHLQKVSLVMCNVGQVFRNSTFRISDAFPNLLEMDIDYCNDLIELPDGLCDIVSMEKLRITNCH 686 (695)
Q Consensus 607 ~L~~~~l~~lp~i~~l~~L~~L~l~~~~i~~~~~~~~~~l~~~l~~L~~L~l~~c~~l~~lP~~i~~L~~L~~L~l~~~~ 686 (695)
++++|.+..++.++.+++|++|++++|.+++.++ . . .+++|+.|++++| .+..+| .+.++++|+.|++++|.
T Consensus 293 ~L~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~-~-~----~l~~L~~L~l~~n-~l~~~~-~l~~l~~L~~L~l~~n~ 364 (466)
T 1o6v_A 293 ELNENQLEDISPISNLKNLTYLTLYFNNISDISP-V-S----SLTKLQRLFFYNN-KVSDVS-SLANLTNINWLSAGHNQ 364 (466)
T ss_dssp ECCSSCCSCCGGGGGCTTCSEEECCSSCCSCCGG-G-G----GCTTCCEEECCSS-CCCCCG-GGTTCTTCCEEECCSSC
T ss_pred EcCCCcccCchhhcCCCCCCEEECcCCcCCCchh-h-c----cCccCCEeECCCC-ccCCch-hhccCCCCCEEeCCCCc
Confidence 9999999887777889999999999999988776 3 3 7999999999997 566665 69999999999999987
Q ss_pred CC
Q 042541 687 RL 688 (695)
Q Consensus 687 ~l 688 (695)
..
T Consensus 365 l~ 366 (466)
T 1o6v_A 365 IS 366 (466)
T ss_dssp CC
T ss_pred cC
Confidence 43
No 138
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.90 E-value=5.6e-09 Score=107.85 Aligned_cols=176 Identities=14% Similarity=0.173 Sum_probs=112.7
Q ss_pred CCCCCCCcchHHHHHHHHHcCCceEEEEEcCCCCcHHHHHHHHhccccccc-cCCCcEEEEEeCCCCCHHHHHHHHHHhc
Q 042541 165 PVISPGLDVPLKELKMELFKDGRQFIVVSAPGGYGKTTLVQRLCKDDQVQG-KFKDDIFYVTVSKNPNVKAIVQKVLHHK 243 (695)
Q Consensus 165 ~~~~vGr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~-~f~~~~~wv~~~~~~~~~~~~~~i~~~l 243 (695)
-..++|++..++.+..++..+..+.+.|+|++|+||||+|+.+++. +.. .+...++.++.+....... ..
T Consensus 24 ~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~l~~~--l~~~~~~~~~~~~~~~~~~~~~~-~~------ 94 (327)
T 1iqp_A 24 LDDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALARE--LFGENWRHNFLELNASDERGINV-IR------ 94 (327)
T ss_dssp TTTCCSCHHHHHHHHHHHHHTCCCEEEEESCTTSSHHHHHHHHHHH--HHGGGHHHHEEEEETTCHHHHHT-TH------
T ss_pred HHHhhCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHH--hcCCcccCceEEeeccccCchHH-HH------
Confidence 3458999999999999998776666999999999999999999873 211 1111133343332111100 00
Q ss_pred CCCCCCCCChHHHHHHHHHHHHh--c-CCCcEEEEEeCCCCCChH----HHhhhccCCCCCEEEEEcCCCCCC------C
Q 042541 244 GYPVPEFQTDEAAINDLERFFKQ--M-RIEAILLVLDDVWPGSES----LLQKLGFQLPDYKILVTSRSEFPQ------F 310 (695)
Q Consensus 244 ~~~~~~~~~~~~~~~~l~~~~~~--l-~~~~~LlVlDdv~~~~~~----~~~~l~~~~~gs~iivTtR~~~~~------~ 310 (695)
..+...... + .+++.++|+||++..... ++..+.....++++|+||...... .
T Consensus 95 --------------~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr 160 (327)
T 1iqp_A 95 --------------EKVKEFARTKPIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSR 160 (327)
T ss_dssp --------------HHHHHHHHSCCGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHT
T ss_pred --------------HHHHHHHhhCCcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHHhh
Confidence 111111111 1 267889999999876543 333333344578888888664211 1
Q ss_pred CCeEecCCCChHHHHHHHHHhccCCCCCCCCCchHHHHHHHHhcCCchhHHHHHHH
Q 042541 311 GSVHYLKPLTYEAARTLFLHSANLQDGNSYIPDENIVSKILRACKGCPLALKVVGG 366 (695)
Q Consensus 311 ~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~~~ 366 (695)
...+.+.+++.++...++...+..... .-..+....|++.++|.|..+..+..
T Consensus 161 ~~~~~~~~l~~~~~~~~l~~~~~~~~~---~~~~~~~~~l~~~~~g~~r~~~~~l~ 213 (327)
T 1iqp_A 161 CAIFRFRPLRDEDIAKRLRYIAENEGL---ELTEEGLQAILYIAEGDMRRAINILQ 213 (327)
T ss_dssp EEEEECCCCCHHHHHHHHHHHHHTTTC---EECHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CcEEEecCCCHHHHHHHHHHHHHhcCC---CCCHHHHHHHHHHCCCCHHHHHHHHH
Confidence 227899999999999999887643322 12356788999999999986654433
No 139
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.89 E-value=5.1e-09 Score=99.10 Aligned_cols=103 Identities=15% Similarity=0.180 Sum_probs=83.3
Q ss_pred cEEEEcccCCCCcccCcccccccCCCCcEEEeccCCCCCcc-c--ccccccccEEeeccccCCcccccchhhhcccCCCc
Q 042541 577 KVLIVTNYGFSPAELNNFRVLSALSKLKKIRLEHVSLPNSL-A--TVRMNHLQKVSLVMCNVGQVFRNSTFRISDAFPNL 653 (695)
Q Consensus 577 r~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~lp-~--i~~l~~L~~L~l~~~~i~~~~~~~~~~l~~~l~~L 653 (695)
++++++++++. .++. .+ ..+|++|++++|.+..+| . ++++++|++|+|++|.++.++|..+. .+++|
T Consensus 11 ~~l~~s~~~l~--~ip~--~~--~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~----~l~~L 80 (192)
T 1w8a_A 11 TTVDCTGRGLK--EIPR--DI--PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFE----GASHI 80 (192)
T ss_dssp TEEECTTSCCS--SCCS--CC--CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTT----TCTTC
T ss_pred CEEEcCCCCcC--cCcc--CC--CCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcC----CcccC
Confidence 78888887662 2221 12 238999999999999887 4 89999999999999999999887776 89999
Q ss_pred cEEecccccccccCc-hhhcCCCCCceeecccccCCCCC
Q 042541 654 LEMDIDYCNDLIELP-DGLCDIVSMEKLRITNCHRLSAL 691 (695)
Q Consensus 654 ~~L~l~~c~~l~~lP-~~i~~L~~L~~L~l~~~~~l~~l 691 (695)
++|+|++|. +..+| ..++.+++|++|+|++|. +..+
T Consensus 81 ~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~-l~~~ 117 (192)
T 1w8a_A 81 QELQLGENK-IKEISNKMFLGLHQLKTLNLYDNQ-ISCV 117 (192)
T ss_dssp CEEECCSCC-CCEECSSSSTTCTTCCEEECCSSC-CCEE
T ss_pred CEEECCCCc-CCccCHHHhcCCCCCCEEECCCCc-CCee
Confidence 999999975 55555 458999999999999977 5444
No 140
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=98.87 E-value=6e-09 Score=116.53 Aligned_cols=78 Identities=17% Similarity=0.155 Sum_probs=56.8
Q ss_pred CCCcEEEeccCCCCCcccccccccccEEeeccccCCcccccchhhhcccCCCccEEecccccccccCchhhcCCCCCcee
Q 042541 601 SKLKKIRLEHVSLPNSLATVRMNHLQKVSLVMCNVGQVFRNSTFRISDAFPNLLEMDIDYCNDLIELPDGLCDIVSMEKL 680 (695)
Q Consensus 601 ~~L~~L~L~~~~l~~lp~i~~l~~L~~L~l~~~~i~~~~~~~~~~l~~~l~~L~~L~l~~c~~l~~lP~~i~~L~~L~~L 680 (695)
++|++|++++|.++.+| ..+++|++|+|++|.++.+|+ .+++|+.|+|++| .+..+|.+++++++|+.|
T Consensus 221 ~~L~~L~Ls~N~L~~lp--~~l~~L~~L~Ls~N~L~~lp~--------~~~~L~~L~Ls~N-~L~~lp~~l~~l~~L~~L 289 (622)
T 3g06_A 221 SGLKELIVSGNRLTSLP--VLPSELKELMVSGNRLTSLPM--------LPSGLLSLSVYRN-QLTRLPESLIHLSSETTV 289 (622)
T ss_dssp TTCCEEECCSSCCSCCC--CCCTTCCEEECCSSCCSCCCC--------CCTTCCEEECCSS-CCCSCCGGGGGSCTTCEE
T ss_pred CCCCEEEccCCccCcCC--CCCCcCcEEECCCCCCCcCCc--------ccccCcEEeCCCC-CCCcCCHHHhhccccCEE
Confidence 45666666666666665 334667777777776666554 4678899999986 567899999999999999
Q ss_pred ecccccCCC
Q 042541 681 RITNCHRLS 689 (695)
Q Consensus 681 ~l~~~~~l~ 689 (695)
+|++|+..+
T Consensus 290 ~L~~N~l~~ 298 (622)
T 3g06_A 290 NLEGNPLSE 298 (622)
T ss_dssp ECCSCCCCH
T ss_pred EecCCCCCC
Confidence 999987443
No 141
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=98.86 E-value=2.5e-08 Score=111.51 Aligned_cols=39 Identities=26% Similarity=0.260 Sum_probs=19.5
Q ss_pred CCCccEEecccccccccCchhhcCCCCCceeecccccCCCCCCC
Q 042541 650 FPNLLEMDIDYCNDLIELPDGLCDIVSMEKLRITNCHRLSALPE 693 (695)
Q Consensus 650 l~~L~~L~l~~c~~l~~lP~~i~~L~~L~~L~l~~~~~l~~lP~ 693 (695)
+++|+.|++++| .+..+|. .+++|+.|+|++|. +..+|.
T Consensus 240 l~~L~~L~Ls~N-~L~~lp~---~~~~L~~L~Ls~N~-L~~lp~ 278 (622)
T 3g06_A 240 PSELKELMVSGN-RLTSLPM---LPSGLLSLSVYRNQ-LTRLPE 278 (622)
T ss_dssp CTTCCEEECCSS-CCSCCCC---CCTTCCEEECCSSC-CCSCCG
T ss_pred CCcCcEEECCCC-CCCcCCc---ccccCcEEeCCCCC-CCcCCH
Confidence 444555555543 3444544 34555555665543 445554
No 142
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.84 E-value=9.7e-09 Score=107.20 Aligned_cols=161 Identities=12% Similarity=0.130 Sum_probs=102.2
Q ss_pred CccceEEeeecCCcccCCCC-CCCCCceEEEEEEccCccccCCh-hhcCCCCCcEE-EEcccCCCCcccCcccccccCCC
Q 042541 526 PNNASLLSISTDETFSSNWP-DMQGPEVKVVVLNIRTKKYVLPD-FLQKMDELKVL-IVTNYGFSPAELNNFRVLSALSK 602 (695)
Q Consensus 526 ~~~~r~l~~~~~~~~~~~~~-~~~~~~l~~L~l~~~~~~~~~p~-~~~~l~~Lr~L-~l~~~~~~~~~~~~~~~l~~l~~ 602 (695)
+..++.|.+..+........ ...+++|+.|.|+.|.....+|. .|.++++|..+ .+.+|.+.. + ....+..+++
T Consensus 29 ~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~--l-~~~~f~~l~~ 105 (350)
T 4ay9_X 29 PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLY--I-NPEAFQNLPN 105 (350)
T ss_dssp CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCE--E-CTTSBCCCTT
T ss_pred CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccc--c-Cchhhhhccc
Confidence 34566666665543221111 13566777777777655444443 56666666543 333443321 1 1122566777
Q ss_pred CcEEEeccCCCCCcc--cccccccccEEeeccc-cCCcccccchhhhcccC-CCccEEecccccccccCchhhcCCCCCc
Q 042541 603 LKKIRLEHVSLPNSL--ATVRMNHLQKVSLVMC-NVGQVFRNSTFRISDAF-PNLLEMDIDYCNDLIELPDGLCDIVSME 678 (695)
Q Consensus 603 L~~L~L~~~~l~~lp--~i~~l~~L~~L~l~~~-~i~~~~~~~~~~l~~~l-~~L~~L~l~~c~~l~~lP~~i~~L~~L~ 678 (695)
|++|++++|.+..+| .+....++.+|++.++ .+..+++..+. .+ ..|++|++++| .+..+|.++....+|+
T Consensus 106 L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~----~~~~~l~~L~L~~N-~i~~i~~~~f~~~~L~ 180 (350)
T 4ay9_X 106 LQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFV----GLSFESVILWLNKN-GIQEIHNSAFNGTQLD 180 (350)
T ss_dssp CCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSST----TSBSSCEEEECCSS-CCCEECTTSSTTEEEE
T ss_pred cccccccccccccCCchhhcccchhhhhhhccccccccccccchh----hcchhhhhhccccc-cccCCChhhccccchh
Confidence 777777777777666 4455566777777654 56666665543 44 46888999985 6788998888888999
Q ss_pred eeecccccCCCCCCCC
Q 042541 679 KLRITNCHRLSALPEG 694 (695)
Q Consensus 679 ~L~l~~~~~l~~lP~~ 694 (695)
.|++.+|+.++.+|.+
T Consensus 181 ~l~l~~~n~l~~i~~~ 196 (350)
T 4ay9_X 181 ELNLSDNNNLEELPND 196 (350)
T ss_dssp EEECTTCTTCCCCCTT
T ss_pred HHhhccCCcccCCCHH
Confidence 9999988889999875
No 143
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=98.80 E-value=1e-09 Score=116.40 Aligned_cols=136 Identities=13% Similarity=0.120 Sum_probs=103.4
Q ss_pred CceEEEEEEccCcc-ccCC---hhhcCCCCCcEEEEcccCCCCcccC-ccc-ccccCCCCcEEEeccCCC-----CCcc-
Q 042541 550 PEVKVVVLNIRTKK-YVLP---DFLQKMDELKVLIVTNYGFSPAELN-NFR-VLSALSKLKKIRLEHVSL-----PNSL- 617 (695)
Q Consensus 550 ~~l~~L~l~~~~~~-~~~p---~~~~~l~~Lr~L~l~~~~~~~~~~~-~~~-~l~~l~~L~~L~L~~~~l-----~~lp- 617 (695)
++|+.|.++.|... ..+| ..+..+++|++|++++|.+....+. ..+ .+..+++|++|+|++|.+ ..+|
T Consensus 159 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~ 238 (386)
T 2ca6_A 159 PPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAI 238 (386)
T ss_dssp CCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHH
T ss_pred CCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHH
Confidence 78888988888554 3444 5677899999999999877432211 112 478899999999999999 5678
Q ss_pred cccccccccEEeeccccCCccc----ccchhhhcccCCCccEEecccccccc----cCchhh-cCCCCCceeecccccC
Q 042541 618 ATVRMNHLQKVSLVMCNVGQVF----RNSTFRISDAFPNLLEMDIDYCNDLI----ELPDGL-CDIVSMEKLRITNCHR 687 (695)
Q Consensus 618 ~i~~l~~L~~L~l~~~~i~~~~----~~~~~~l~~~l~~L~~L~l~~c~~l~----~lP~~i-~~L~~L~~L~l~~~~~ 687 (695)
.+..+++|++|+|++|.++... +..+. . ..+++|++|+|++|.... .+|..+ .++++|++|++++|+.
T Consensus 239 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~-~-~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l 315 (386)
T 2ca6_A 239 ALKSWPNLRELGLNDCLLSARGAAAVVDAFS-K-LENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRF 315 (386)
T ss_dssp HGGGCTTCCEEECTTCCCCHHHHHHHHHHHH-T-CSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBS
T ss_pred HHccCCCcCEEECCCCCCchhhHHHHHHHHh-h-ccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcC
Confidence 8899999999999999987641 22210 0 038999999999975433 399888 7799999999999873
No 144
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=98.80 E-value=1.9e-08 Score=108.83 Aligned_cols=142 Identities=24% Similarity=0.197 Sum_probs=104.6
Q ss_pred CccceEEeeecCCcccCCCCCCCCCceEEEEEEccCccccCChhhcCCCCCcEEEEcccCCCCcccCcccccccCCCCcE
Q 042541 526 PNNASLLSISTDETFSSNWPDMQGPEVKVVVLNIRTKKYVLPDFLQKMDELKVLIVTNYGFSPAELNNFRVLSALSKLKK 605 (695)
Q Consensus 526 ~~~~r~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~p~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~ 605 (695)
+...+++.+..+.... .+ ..+++|+.|.++.+.... +|.. .++|++|++++|.+.. ++ .++.+++|++
T Consensus 90 ~~~L~~L~l~~n~l~~-lp--~~~~~L~~L~l~~n~l~~-l~~~---~~~L~~L~L~~n~l~~--lp---~~~~l~~L~~ 157 (454)
T 1jl5_A 90 PPHLESLVASCNSLTE-LP--ELPQSLKSLLVDNNNLKA-LSDL---PPLLEYLGVSNNQLEK--LP---ELQNSSFLKI 157 (454)
T ss_dssp CTTCSEEECCSSCCSS-CC--CCCTTCCEEECCSSCCSC-CCSC---CTTCCEEECCSSCCSS--CC---CCTTCTTCCE
T ss_pred cCCCCEEEccCCcCCc-cc--cccCCCcEEECCCCccCc-ccCC---CCCCCEEECcCCCCCC--Cc---ccCCCCCCCE
Confidence 4567888876654322 11 134789999988774432 3321 2689999999987642 33 4889999999
Q ss_pred EEeccCCCCCcc-cccccccccEEeeccccCCcccccchhhhcccCCCccEEecccccccccCchhhcCCCCCceeeccc
Q 042541 606 IRLEHVSLPNSL-ATVRMNHLQKVSLVMCNVGQVFRNSTFRISDAFPNLLEMDIDYCNDLIELPDGLCDIVSMEKLRITN 684 (695)
Q Consensus 606 L~L~~~~l~~lp-~i~~l~~L~~L~l~~~~i~~~~~~~~~~l~~~l~~L~~L~l~~c~~l~~lP~~i~~L~~L~~L~l~~ 684 (695)
|++++|.++.+| .+ .+|++|++++|.++.+| ... .+++|++|++++| .+..+|... ++|++|++++
T Consensus 158 L~l~~N~l~~lp~~~---~~L~~L~L~~n~l~~l~-~~~-----~l~~L~~L~l~~N-~l~~l~~~~---~~L~~L~l~~ 224 (454)
T 1jl5_A 158 IDVDNNSLKKLPDLP---PSLEFIAAGNNQLEELP-ELQ-----NLPFLTAIYADNN-SLKKLPDLP---LSLESIVAGN 224 (454)
T ss_dssp EECCSSCCSCCCCCC---TTCCEEECCSSCCSSCC-CCT-----TCTTCCEEECCSS-CCSSCCCCC---TTCCEEECCS
T ss_pred EECCCCcCcccCCCc---ccccEEECcCCcCCcCc-ccc-----CCCCCCEEECCCC-cCCcCCCCc---CcccEEECcC
Confidence 999999999888 43 48999999999998865 443 8999999999997 466677643 5899999999
Q ss_pred ccCCCCCCC
Q 042541 685 CHRLSALPE 693 (695)
Q Consensus 685 ~~~l~~lP~ 693 (695)
|. +..+|.
T Consensus 225 n~-l~~lp~ 232 (454)
T 1jl5_A 225 NI-LEELPE 232 (454)
T ss_dssp SC-CSSCCC
T ss_pred Cc-CCcccc
Confidence 75 778874
No 145
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=98.79 E-value=1.2e-09 Score=115.93 Aligned_cols=156 Identities=12% Similarity=0.150 Sum_probs=95.9
Q ss_pred CccceEEeeecCCcccCC----C-CCCCCCceEEEEEEccCccc----cCChhhcCC---------CCCcEEEEcccCCC
Q 042541 526 PNNASLLSISTDETFSSN----W-PDMQGPEVKVVVLNIRTKKY----VLPDFLQKM---------DELKVLIVTNYGFS 587 (695)
Q Consensus 526 ~~~~r~l~~~~~~~~~~~----~-~~~~~~~l~~L~l~~~~~~~----~~p~~~~~l---------~~Lr~L~l~~~~~~ 587 (695)
....++|.+..+...... + .-..+++|+.|.|+.|.... .++..+..+ ++|++|++++|.+.
T Consensus 93 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~ 172 (386)
T 2ca6_A 93 CPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLE 172 (386)
T ss_dssp CTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCT
T ss_pred CCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCC
Confidence 345667766554332110 0 00246777777777765432 233334444 77888888777664
Q ss_pred CcccCcc-cccccCCCCcEEEeccCCCC------Ccc-cccccccccEEeeccccCC-----cccccchhhhcccCCCcc
Q 042541 588 PAELNNF-RVLSALSKLKKIRLEHVSLP------NSL-ATVRMNHLQKVSLVMCNVG-----QVFRNSTFRISDAFPNLL 654 (695)
Q Consensus 588 ~~~~~~~-~~l~~l~~L~~L~L~~~~l~------~lp-~i~~l~~L~~L~l~~~~i~-----~~~~~~~~~l~~~l~~L~ 654 (695)
...++.+ ..+..+++|++|++++|.+. -+| .+.++++|++|+|++|.++ .++. .+. .+++|+
T Consensus 173 ~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~-~l~----~~~~L~ 247 (386)
T 2ca6_A 173 NGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAI-ALK----SWPNLR 247 (386)
T ss_dssp GGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHH-HGG----GCTTCC
T ss_pred cHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHH-HHc----cCCCcC
Confidence 3333221 23567778888888888877 345 6777888888888888774 2333 222 678888
Q ss_pred EEeccccccccc----Cchhh--cCCCCCceeeccccc
Q 042541 655 EMDIDYCNDLIE----LPDGL--CDIVSMEKLRITNCH 686 (695)
Q Consensus 655 ~L~l~~c~~l~~----lP~~i--~~L~~L~~L~l~~~~ 686 (695)
+|+|++|..... +|..+ +++++|++|+|++|.
T Consensus 248 ~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~ 285 (386)
T 2ca6_A 248 ELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNE 285 (386)
T ss_dssp EEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSC
T ss_pred EEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCc
Confidence 888888753322 46666 448888888888876
No 146
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.78 E-value=2e-08 Score=93.27 Aligned_cols=96 Identities=13% Similarity=0.075 Sum_probs=70.3
Q ss_pred ccCChhhcCCCCCcEEEEcccCCCCcccCcccccccCCCCcEEEeccCCCCCcc--cccccccccEEeeccccCCccccc
Q 042541 564 YVLPDFLQKMDELKVLIVTNYGFSPAELNNFRVLSALSKLKKIRLEHVSLPNSL--ATVRMNHLQKVSLVMCNVGQVFRN 641 (695)
Q Consensus 564 ~~~p~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~lp--~i~~l~~L~~L~l~~~~i~~~~~~ 641 (695)
..+|..+. ++|++|+|++|.+.... ...++.+++|++|+|++|.++.+| .++++++|++|+|++|.++.+++.
T Consensus 25 ~~iP~~~~--~~L~~L~Ls~N~l~~~~---~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~ 99 (174)
T 2r9u_A 25 ASVPAGIP--TDKQRLWLNNNQITKLE---PGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRG 99 (174)
T ss_dssp SSCCSCCC--TTCSEEECCSSCCCCCC---TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred CccCCCcC--CCCcEEEeCCCCccccC---HHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHH
Confidence 45665543 77888888888764211 123678888888888888888888 457888888888888888888887
Q ss_pred chhhhcccCCCccEEecccccccccCch
Q 042541 642 STFRISDAFPNLLEMDIDYCNDLIELPD 669 (695)
Q Consensus 642 ~~~~l~~~l~~L~~L~l~~c~~l~~lP~ 669 (695)
.+. .+++|++|+|++|. +...|.
T Consensus 100 ~~~----~l~~L~~L~L~~N~-~~c~~~ 122 (174)
T 2r9u_A 100 AFD----NLKSLTHIYLYNNP-WDCECR 122 (174)
T ss_dssp TTT----TCTTCSEEECCSSC-BCTTBG
T ss_pred Hhc----cccCCCEEEeCCCC-cccccc
Confidence 665 78888888888853 444444
No 147
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.76 E-value=4.7e-08 Score=98.83 Aligned_cols=165 Identities=7% Similarity=0.070 Sum_probs=105.7
Q ss_pred CCCCCcchHHHHHHHHH----cCCceEEEEEcCCCCcHHHHHHHHhccccccc---cC-CCcEEEEEeCCCCCHHHHHHH
Q 042541 167 ISPGLDVPLKELKMELF----KDGRQFIVVSAPGGYGKTTLVQRLCKDDQVQG---KF-KDDIFYVTVSKNPNVKAIVQK 238 (695)
Q Consensus 167 ~~vGr~~~~~~l~~~L~----~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~---~f-~~~~~wv~~~~~~~~~~~~~~ 238 (695)
.+.||++|.++|...|. .+..+.+.|+|++|+|||++++.+++...... .. ...++++++....+...++..
T Consensus 21 ~L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~ 100 (318)
T 3te6_A 21 LLKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEK 100 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHH
Confidence 47899999999988776 45678899999999999999999998422111 11 122557777788888999999
Q ss_pred HHHhcCCCCCCCCChHHHHHHHHHHHHhc---CCCcEEEEEeCCCCCC-hHHH-hhhcc-CCCCC--EEEEEcCC-CCC-
Q 042541 239 VLHHKGYPVPEFQTDEAAINDLERFFKQM---RIEAILLVLDDVWPGS-ESLL-QKLGF-QLPDY--KILVTSRS-EFP- 308 (695)
Q Consensus 239 i~~~l~~~~~~~~~~~~~~~~l~~~~~~l---~~~~~LlVlDdv~~~~-~~~~-~~l~~-~~~gs--~iivTtR~-~~~- 308 (695)
|.+++.+...... .....+..++..+ .+++++++||+++... +..+ .-+.+ ...++ .||.++.. ...
T Consensus 101 I~~~L~g~~~~~~---~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~~q~~L~~l~~~~~~~~s~~~vI~i~n~~d~~~ 177 (318)
T 3te6_A 101 IWFAISKENLCGD---ISLEALNFYITNVPKAKKRKTLILIQNPENLLSEKILQYFEKWISSKNSKLSIICVGGHNVTIR 177 (318)
T ss_dssp HHHHHSCCC--CC---CCHHHHHHHHHHSCGGGSCEEEEEEECCSSSCCTHHHHHHHHHHHCSSCCEEEEEECCSSCCCH
T ss_pred HHHHhcCCCCCch---HHHHHHHHHHHHhhhccCCceEEEEecHHHhhcchHHHHHHhcccccCCcEEEEEEecCcccch
Confidence 9999865422111 1234455556443 5678999999987653 2222 22221 12333 33333433 211
Q ss_pred ---------CCC-CeEecCCCChHHHHHHHHHhccC
Q 042541 309 ---------QFG-SVHYLKPLTYEAARTLFLHSANL 334 (695)
Q Consensus 309 ---------~~~-~~~~l~~L~~~ea~~Lf~~~~~~ 334 (695)
..+ ..+.+.+++.+|-.+++.+++..
T Consensus 178 ~~L~~~v~SR~~~~~i~F~pYt~~el~~Il~~Rl~~ 213 (318)
T 3te6_A 178 EQINIMPSLKAHFTEIKLNKVDKNELQQMIITRLKS 213 (318)
T ss_dssp HHHHTCHHHHTTEEEEECCCCCHHHHHHHHHHHHHH
T ss_pred hhcchhhhccCCceEEEeCCCCHHHHHHHHHHHHHh
Confidence 122 36899999999999999887643
No 148
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.75 E-value=1.3e-07 Score=99.41 Aligned_cols=185 Identities=17% Similarity=0.108 Sum_probs=108.6
Q ss_pred CCCCCCcchHHHHHHHHHcCC-ceEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCCCCCHHHHHHHHHHhcC
Q 042541 166 VISPGLDVPLKELKMELFKDG-RQFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSKNPNVKAIVQKVLHHKG 244 (695)
Q Consensus 166 ~~~vGr~~~~~~l~~~L~~~~-~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~~~~~~~~~~~i~~~l~ 244 (695)
..++|++..++.+...+..+. ...+.|+|++|+||||+|+.+++.......+. ...+.... ....+.....
T Consensus 16 ~~~vg~~~~~~~L~~~l~~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~----~~~~~~~~----~~~~~~~~~~ 87 (373)
T 1jr3_A 16 ADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGIT----ATPCGVCD----NCREIEQGRF 87 (373)
T ss_dssp TTSCSCHHHHHHHHHHHHHTCCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSC----SSCCSSSH----HHHHHHTSCC
T ss_pred hhccCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCC----CCCCcccH----HHHHHhccCC
Confidence 458999999999999988654 46789999999999999999987321111100 00000000 0011110000
Q ss_pred C-----CCCCCCChHHHHHHHHHHHHh-----cCCCcEEEEEeCCCCCChH----HHhhhccCCCCCEEEEEcCCCCC--
Q 042541 245 Y-----PVPEFQTDEAAINDLERFFKQ-----MRIEAILLVLDDVWPGSES----LLQKLGFQLPDYKILVTSRSEFP-- 308 (695)
Q Consensus 245 ~-----~~~~~~~~~~~~~~l~~~~~~-----l~~~~~LlVlDdv~~~~~~----~~~~l~~~~~gs~iivTtR~~~~-- 308 (695)
. ........ +.+..+++. ..+++.++|+||++..... ++..+.....+..+|++|.....
T Consensus 88 ~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~ 163 (373)
T 1jr3_A 88 VDLIEIDAASRTKV----EDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLP 163 (373)
T ss_dssp SSCEEEETTCSCCS----SCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGGGSC
T ss_pred CceEEecccccCCH----HHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChHhCc
Confidence 0 00000000 112222222 2466789999999776543 33334334446677777764421
Q ss_pred ----CCCCeEecCCCChHHHHHHHHHhccCCCCCCCCCchHHHHHHHHhcCCchhHHHHHH
Q 042541 309 ----QFGSVHYLKPLTYEAARTLFLHSANLQDGNSYIPDENIVSKILRACKGCPLALKVVG 365 (695)
Q Consensus 309 ----~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~~ 365 (695)
.....+.+.+++.++..+++...+..... .-..+.+..|++.++|.|..+..+.
T Consensus 164 ~~l~sr~~~i~~~~l~~~~~~~~l~~~~~~~~~---~~~~~a~~~l~~~~~G~~r~~~~~l 221 (373)
T 1jr3_A 164 VTILSRCLQFHLKALDVEQIRHQLEHILNEEHI---AHEPRALQLLARAAEGSLRDALSLT 221 (373)
T ss_dssp HHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTC---CBCHHHHHHHHHHSSSCHHHHHHHH
T ss_pred HHHHhheeEeeCCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHCCCCHHHHHHHH
Confidence 12247899999999999999876533221 1235678889999999998776654
No 149
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.73 E-value=2.5e-08 Score=92.26 Aligned_cols=89 Identities=16% Similarity=0.155 Sum_probs=64.9
Q ss_pred cCChhhcCCCCCcEEEEcccCCCCcccCcccccccCCCCcEEEeccCCCCCcc--cccccccccEEeeccccCCcccccc
Q 042541 565 VLPDFLQKMDELKVLIVTNYGFSPAELNNFRVLSALSKLKKIRLEHVSLPNSL--ATVRMNHLQKVSLVMCNVGQVFRNS 642 (695)
Q Consensus 565 ~~p~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~lp--~i~~l~~L~~L~l~~~~i~~~~~~~ 642 (695)
.+|..+ .++|++|+|++|.+.... ...+..+++|++|+|++|.++.+| .++++++|++|+|++|.++.+++..
T Consensus 23 ~ip~~~--~~~l~~L~L~~N~i~~~~---~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~ 97 (170)
T 3g39_A 23 SVPTGI--PTTTQVLYLYDNQITKLE---PGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGA 97 (170)
T ss_dssp SCCSCC--CTTCSEEECCSSCCCCCC---TTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred ccCccC--CCCCcEEEcCCCcCCccC---hhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHH
Confidence 455544 367888888887664211 123677888888888888888777 4578888888888888888888776
Q ss_pred hhhhcccCCCccEEeccccc
Q 042541 643 TFRISDAFPNLLEMDIDYCN 662 (695)
Q Consensus 643 ~~~l~~~l~~L~~L~l~~c~ 662 (695)
+. .+++|++|+|++|.
T Consensus 98 ~~----~l~~L~~L~L~~N~ 113 (170)
T 3g39_A 98 FD----NLKSLTHIWLLNNP 113 (170)
T ss_dssp TT----TCTTCCEEECCSSC
T ss_pred hc----CCCCCCEEEeCCCC
Confidence 65 78888888888754
No 150
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.70 E-value=4.5e-08 Score=100.61 Aligned_cols=174 Identities=14% Similarity=0.164 Sum_probs=110.1
Q ss_pred CCCCCCCcchHHHHHHHHHcCCceEEEEEcCCCCcHHHHHHHHhccccc-cccCCCcEEEEEeCCCCCHHHHHHHHHHhc
Q 042541 165 PVISPGLDVPLKELKMELFKDGRQFIVVSAPGGYGKTTLVQRLCKDDQV-QGKFKDDIFYVTVSKNPNVKAIVQKVLHHK 243 (695)
Q Consensus 165 ~~~~vGr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~-~~~f~~~~~wv~~~~~~~~~~~~~~i~~~l 243 (695)
-..++|++..++.+..++..+..+.+.|+|++|+|||++|+.+++. + ...+...++.++.+......
T Consensus 16 ~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~--l~~~~~~~~~~~~~~~~~~~~~---------- 83 (319)
T 2chq_A 16 LDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARD--LFGENWRDNFIEMNASDERGID---------- 83 (319)
T ss_dssp GGGSCSCHHHHHHHHTTTTTTCCCCEEEESSSSSSHHHHHHHHHHH--HHTTCHHHHCEEEETTSTTCTT----------
T ss_pred HHHHhCCHHHHHHHHHHHhCCCCCeEEEECcCCcCHHHHHHHHHHH--hcCCcccCCeEEEeCccccChH----------
Confidence 3458999999999988887666555999999999999999999873 2 11122113344444321110
Q ss_pred CCCCCCCCChHHHHHHHHHHHHh--c-CCCcEEEEEeCCCCCChHHHhh----hccCCCCCEEEEEcCCCCC------CC
Q 042541 244 GYPVPEFQTDEAAINDLERFFKQ--M-RIEAILLVLDDVWPGSESLLQK----LGFQLPDYKILVTSRSEFP------QF 310 (695)
Q Consensus 244 ~~~~~~~~~~~~~~~~l~~~~~~--l-~~~~~LlVlDdv~~~~~~~~~~----l~~~~~gs~iivTtR~~~~------~~ 310 (695)
.... .+...... + .+++.++|+||++......... +....+++.+|+||..... ..
T Consensus 84 --------~~~~---~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr 152 (319)
T 2chq_A 84 --------VVRH---KIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSR 152 (319)
T ss_dssp --------TSSH---HHHHHHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHHHTT
T ss_pred --------HHHH---HHHHHHhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHHHhh
Confidence 0001 11111111 1 2668999999997765432222 2223346778877765421 12
Q ss_pred CCeEecCCCChHHHHHHHHHhccCCCCCCCCCchHHHHHHHHhcCCchhHHHHH
Q 042541 311 GSVHYLKPLTYEAARTLFLHSANLQDGNSYIPDENIVSKILRACKGCPLALKVV 364 (695)
Q Consensus 311 ~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~ 364 (695)
...+.+.+++.++..+++...+..... .-..+....|++.++|.+..+...
T Consensus 153 ~~~i~~~~~~~~~~~~~l~~~~~~~~~---~i~~~~l~~l~~~~~G~~r~~~~~ 203 (319)
T 2chq_A 153 CAVFRFKPVPKEAMKKRLLEICEKEGV---KITEDGLEALIYISGGDFRKAINA 203 (319)
T ss_dssp CEEEECCCCCHHHHHHHHHHHHHTTCC---CBCHHHHHHHHHTTTTCHHHHHHH
T ss_pred CeEEEecCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 238999999999999999887653322 123667889999999999865544
No 151
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.64 E-value=3.7e-07 Score=95.16 Aligned_cols=188 Identities=14% Similarity=0.068 Sum_probs=113.5
Q ss_pred CCCCCCCcchHHHHHHHHHcCCceEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCCCCCHHHHHHHHHHhcC
Q 042541 165 PVISPGLDVPLKELKMELFKDGRQFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSKNPNVKAIVQKVLHHKG 244 (695)
Q Consensus 165 ~~~~vGr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~~~~~~~~~~~i~~~l~ 244 (695)
-..++|++..++.+..++..+..+.+.|+|++|+||||+|+.+++.......+...+..++.+.......+. +.+..+.
T Consensus 36 ~~~i~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 114 (353)
T 1sxj_D 36 LDEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGISIVR-EKVKNFA 114 (353)
T ss_dssp TTTCCSCCTTHHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCCHHHHT-THHHHHH
T ss_pred HHHhhCCHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccccccchHHHH-HHHHHHh
Confidence 356899999999999998876545589999999999999999987321111233334455555433333222 1111110
Q ss_pred -CCCCCCCChHHHHHHHHHHHHhcCCCcEEEEEeCCCCCChH----HHhhhccCCCCCEEEEEcCCCCCCC------CCe
Q 042541 245 -YPVPEFQTDEAAINDLERFFKQMRIEAILLVLDDVWPGSES----LLQKLGFQLPDYKILVTSRSEFPQF------GSV 313 (695)
Q Consensus 245 -~~~~~~~~~~~~~~~l~~~~~~l~~~~~LlVlDdv~~~~~~----~~~~l~~~~~gs~iivTtR~~~~~~------~~~ 313 (695)
......... . . ...-.++.-++++|++...... ++..+.......++|++|....... ...
T Consensus 115 ~~~~~~~~~~--~-----~-~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~sR~~~ 186 (353)
T 1sxj_D 115 RLTVSKPSKH--D-----L-ENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQCSK 186 (353)
T ss_dssp HSCCCCCCTT--H-----H-HHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHHSEE
T ss_pred hhcccccchh--h-----c-ccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhhccCce
Confidence 000000000 0 0 0111245679999998766532 3333433445677777775442111 127
Q ss_pred EecCCCChHHHHHHHHHhccCCCCCCCCCchHHHHHHHHhcCCchhHHHHH
Q 042541 314 HYLKPLTYEAARTLFLHSANLQDGNSYIPDENIVSKILRACKGCPLALKVV 364 (695)
Q Consensus 314 ~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~ 364 (695)
+.+.+++.++....+...+..... .-.++....|++.++|.|..+..+
T Consensus 187 i~~~~~~~~~~~~~l~~~~~~~~~---~i~~~~l~~l~~~~~G~~r~~~~~ 234 (353)
T 1sxj_D 187 FRFKALDASNAIDRLRFISEQENV---KCDDGVLERILDISAGDLRRGITL 234 (353)
T ss_dssp EECCCCCHHHHHHHHHHHHHTTTC---CCCHHHHHHHHHHTSSCHHHHHHH
T ss_pred EEeCCCCHHHHHHHHHHHHHHhCC---CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 889999999999999887643222 123678899999999999865544
No 152
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.63 E-value=5.1e-08 Score=101.53 Aligned_cols=92 Identities=17% Similarity=0.184 Sum_probs=70.3
Q ss_pred ccccCChhhcCCCCCcEEEEcc-cCCCCcccCcccccccCCCCcEEEeccCCCCCcc--cccccccccEEeeccccCCcc
Q 042541 562 KKYVLPDFLQKMDELKVLIVTN-YGFSPAELNNFRVLSALSKLKKIRLEHVSLPNSL--ATVRMNHLQKVSLVMCNVGQV 638 (695)
Q Consensus 562 ~~~~~p~~~~~l~~Lr~L~l~~-~~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~lp--~i~~l~~L~~L~l~~~~i~~~ 638 (695)
....+|. +..+.+|+.|+|++ |.+.. ++ ...++.|++|++|+|++|.+..+| .+++|++|++|+|++|.++.+
T Consensus 20 ~l~~ip~-l~~~~~L~~L~l~~~n~l~~--~~-~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~ 95 (347)
T 2ifg_A 20 ALDSLHH-LPGAENLTELYIENQQHLQH--LE-LRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESL 95 (347)
T ss_dssp CCTTTTT-SCSCSCCSEEECCSCSSCCE--EC-GGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCC
T ss_pred CCCccCC-CCCCCCeeEEEccCCCCCCC--cC-hhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCcccee
Confidence 4456788 88888899999985 66531 11 123778888999999999888766 778899999999999988888
Q ss_pred cccchhhhcccCCCccEEeccccc
Q 042541 639 FRNSTFRISDAFPNLLEMDIDYCN 662 (695)
Q Consensus 639 ~~~~~~~l~~~l~~L~~L~l~~c~ 662 (695)
|+..+. .++ |+.|+|.+|.
T Consensus 96 ~~~~~~----~~~-L~~l~l~~N~ 114 (347)
T 2ifg_A 96 SWKTVQ----GLS-LQELVLSGNP 114 (347)
T ss_dssp CSTTTC----SCC-CCEEECCSSC
T ss_pred CHHHcc----cCC-ceEEEeeCCC
Confidence 887774 344 8889888754
No 153
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.59 E-value=2.5e-08 Score=104.61 Aligned_cols=164 Identities=15% Similarity=0.167 Sum_probs=105.8
Q ss_pred CCccceEEeeecCCcccCCC----CC-CCCC-ceEEEEEEccCccccCChhhcCC-----CCCcEEEEcccCCCCcccCc
Q 042541 525 HPNNASLLSISTDETFSSNW----PD-MQGP-EVKVVVLNIRTKKYVLPDFLQKM-----DELKVLIVTNYGFSPAELNN 593 (695)
Q Consensus 525 ~~~~~r~l~~~~~~~~~~~~----~~-~~~~-~l~~L~l~~~~~~~~~p~~~~~l-----~~Lr~L~l~~~~~~~~~~~~ 593 (695)
.+...++|.+..+....... .. ..++ +|+.|.++.|......+..+..+ ++|++|++++|.+.......
T Consensus 20 ~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~ 99 (362)
T 3goz_A 20 IPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDE 99 (362)
T ss_dssp SCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHH
T ss_pred CCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHH
Confidence 34558888887665332221 11 1466 89999998886666555555554 89999999998764322111
Q ss_pred c-cccccC-CCCcEEEeccCCCCCcc--cccc-----cccccEEeeccccCCcccccchh-hhcccCC-CccEEeccccc
Q 042541 594 F-RVLSAL-SKLKKIRLEHVSLPNSL--ATVR-----MNHLQKVSLVMCNVGQVFRNSTF-RISDAFP-NLLEMDIDYCN 662 (695)
Q Consensus 594 ~-~~l~~l-~~L~~L~L~~~~l~~lp--~i~~-----l~~L~~L~l~~~~i~~~~~~~~~-~l~~~l~-~L~~L~l~~c~ 662 (695)
+ ..+..+ ++|++|+|++|.++..+ .++. .++|++|+|++|.++......+. .+. .++ +|++|+|++|.
T Consensus 100 l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~-~~~~~L~~L~Ls~n~ 178 (362)
T 3goz_A 100 LVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILA-AIPANVNSLNLRGNN 178 (362)
T ss_dssp HHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHH-TSCTTCCEEECTTSC
T ss_pred HHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHh-cCCccccEeeecCCC
Confidence 1 113444 78999999999988555 4333 25899999999988753322211 111 444 89999999975
Q ss_pred ccccCch----hhcCC-CCCceeecccccCCCC
Q 042541 663 DLIELPD----GLCDI-VSMEKLRITNCHRLSA 690 (695)
Q Consensus 663 ~l~~lP~----~i~~L-~~L~~L~l~~~~~l~~ 690 (695)
.-...|. .+..+ ++|++|+|++|. ++.
T Consensus 179 l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-i~~ 210 (362)
T 3goz_A 179 LASKNCAELAKFLASIPASVTSLDLSANL-LGL 210 (362)
T ss_dssp GGGSCHHHHHHHHHTSCTTCCEEECTTSC-GGG
T ss_pred CchhhHHHHHHHHHhCCCCCCEEECCCCC-CCh
Confidence 4334443 34455 599999999976 554
No 154
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.58 E-value=2.1e-08 Score=105.24 Aligned_cols=163 Identities=15% Similarity=0.122 Sum_probs=112.8
Q ss_pred cceEEeeecCCcccCCCCCC-C-----CCceEEEEEEccCccccCCh----hhcCC-CCCcEEEEcccCCCCcccCcc-c
Q 042541 528 NASLLSISTDETFSSNWPDM-Q-----GPEVKVVVLNIRTKKYVLPD----FLQKM-DELKVLIVTNYGFSPAELNNF-R 595 (695)
Q Consensus 528 ~~r~l~~~~~~~~~~~~~~~-~-----~~~l~~L~l~~~~~~~~~p~----~~~~l-~~Lr~L~l~~~~~~~~~~~~~-~ 595 (695)
..++|.+..+......+..+ . +++|+.|.++.+......+. .+..+ ++|++|++++|.+.......+ .
T Consensus 52 ~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~ 131 (362)
T 3goz_A 52 SVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQ 131 (362)
T ss_dssp TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHH
T ss_pred ceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHH
Confidence 78888887765433222111 1 38999999999876555554 34555 899999999998743322111 1
Q ss_pred cccc-CCCCcEEEeccCCCC-----Ccc-cccccc-cccEEeeccccCCcccccchhhhcccC-CCccEEeccccccccc
Q 042541 596 VLSA-LSKLKKIRLEHVSLP-----NSL-ATVRMN-HLQKVSLVMCNVGQVFRNSTFRISDAF-PNLLEMDIDYCNDLIE 666 (695)
Q Consensus 596 ~l~~-l~~L~~L~L~~~~l~-----~lp-~i~~l~-~L~~L~l~~~~i~~~~~~~~~~l~~~l-~~L~~L~l~~c~~l~~ 666 (695)
.+.. ..+|++|+|++|.+. .++ .+..++ +|++|+|++|.++...+..+...-..+ ++|++|+|++|. +..
T Consensus 132 ~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-i~~ 210 (362)
T 3goz_A 132 AFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANL-LGL 210 (362)
T ss_dssp HHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSC-GGG
T ss_pred HHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCC-CCh
Confidence 1334 368999999999987 444 556666 999999999999876654333111145 599999999975 565
Q ss_pred -----CchhhcCC-CCCceeecccccCCCCCC
Q 042541 667 -----LPDGLCDI-VSMEKLRITNCHRLSALP 692 (695)
Q Consensus 667 -----lP~~i~~L-~~L~~L~l~~~~~l~~lP 692 (695)
+|..+..+ ++|++|+|++|. ++..+
T Consensus 211 ~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~ 241 (362)
T 3goz_A 211 KSYAELAYIFSSIPNHVVSLNLCLNC-LHGPS 241 (362)
T ss_dssp SCHHHHHHHHHHSCTTCCEEECCSSC-CCCCC
T ss_pred hHHHHHHHHHhcCCCCceEEECcCCC-CCcHH
Confidence 77778775 599999999976 65543
No 155
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.53 E-value=1.5e-06 Score=89.92 Aligned_cols=166 Identities=17% Similarity=0.177 Sum_probs=105.0
Q ss_pred CCCCCCCcchHHHHHHHHHc-----CCceEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCCCCCHHHHHHHH
Q 042541 165 PVISPGLDVPLKELKMELFK-----DGRQFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSKNPNVKAIVQKV 239 (695)
Q Consensus 165 ~~~~vGr~~~~~~l~~~L~~-----~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~~~~~~~~~~~i 239 (695)
-+.++|++..++++..++.. .....|.|+|++|+|||++|+.+++ ..... .+.++.+.....
T Consensus 28 ~~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~--~~~~~----~~~~~~~~~~~~------- 94 (338)
T 3pfi_A 28 FDGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISY--EMSAN----IKTTAAPMIEKS------- 94 (338)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHH--HTTCC----EEEEEGGGCCSH-------
T ss_pred HHHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHH--HhCCC----eEEecchhccch-------
Confidence 45689999999999888872 3356789999999999999999987 33222 334444322111
Q ss_pred HHhcCCCCCCCCChHHHHHHHHHHHHhcCCCcEEEEEeCCCCCChH----HHhhhccC------------------CCCC
Q 042541 240 LHHKGYPVPEFQTDEAAINDLERFFKQMRIEAILLVLDDVWPGSES----LLQKLGFQ------------------LPDY 297 (695)
Q Consensus 240 ~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~~~LlVlDdv~~~~~~----~~~~l~~~------------------~~gs 297 (695)
..+...+.. ..+..+|+||++...... ++..+... .++.
T Consensus 95 ------------------~~~~~~~~~-~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (338)
T 3pfi_A 95 ------------------GDLAAILTN-LSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKF 155 (338)
T ss_dssp ------------------HHHHHHHHT-CCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCC
T ss_pred ------------------hHHHHHHHh-ccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCe
Confidence 112222222 245678999999776543 22222111 1124
Q ss_pred EEEEEcCCCC-------CCCCCeEecCCCChHHHHHHHHHhccCCCCCCCCCchHHHHHHHHhcCCchhHHHHHH
Q 042541 298 KILVTSRSEF-------PQFGSVHYLKPLTYEAARTLFLHSANLQDGNSYIPDENIVSKILRACKGCPLALKVVG 365 (695)
Q Consensus 298 ~iivTtR~~~-------~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~~ 365 (695)
.+|.||.... ...+..+.+.+++.++...++...+..... .-..+....|++.+.|.|-.+..+.
T Consensus 156 ~~i~atn~~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~~~---~~~~~~~~~l~~~~~G~~r~l~~~l 227 (338)
T 3pfi_A 156 TLIGATTRAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLNK---TCEEKAALEIAKRSRSTPRIALRLL 227 (338)
T ss_dssp EEEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTC---EECHHHHHHHHHTTTTCHHHHHHHH
T ss_pred EEEEeCCCccccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhcCC---CCCHHHHHHHHHHHCcCHHHHHHHH
Confidence 5666555431 123358999999999999999877643221 1236778889999999996655443
No 156
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.52 E-value=4.9e-07 Score=99.14 Aligned_cols=184 Identities=13% Similarity=0.120 Sum_probs=107.4
Q ss_pred CCCCCCCcchHHHHHHHHHc-----------------CCceEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeC
Q 042541 165 PVISPGLDVPLKELKMELFK-----------------DGRQFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVS 227 (695)
Q Consensus 165 ~~~~vGr~~~~~~l~~~L~~-----------------~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~ 227 (695)
-..++|++..++++..++.. +..+.+.|+|++|+||||+|+.+++. . ...++.++.+
T Consensus 38 ~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~--l----~~~~i~in~s 111 (516)
T 1sxj_A 38 LQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQE--L----GYDILEQNAS 111 (516)
T ss_dssp GGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHH--T----TCEEEEECTT
T ss_pred HHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHH--c----CCCEEEEeCC
Confidence 35689999999999999874 13478999999999999999999873 3 2335566666
Q ss_pred CCCCHHHHHHHHHHhcCCCCCCCCChHHHHHHHHHHHHhcCCCcEEEEEeCCCCCCh------HHHhhhccCCCCCEEEE
Q 042541 228 KNPNVKAIVQKVLHHKGYPVPEFQTDEAAINDLERFFKQMRIEAILLVLDDVWPGSE------SLLQKLGFQLPDYKILV 301 (695)
Q Consensus 228 ~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~~~LlVlDdv~~~~~------~~~~~l~~~~~gs~iiv 301 (695)
.......+ ...+........- .. ....... .....+++.+|++|+++.... ..+..+... .+..||+
T Consensus 112 ~~~~~~~~-~~~i~~~~~~~~~-~~---~~~~~~~-~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~~-~~~~iIl 184 (516)
T 1sxj_A 112 DVRSKTLL-NAGVKNALDNMSV-VG---YFKHNEE-AQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRK-TSTPLIL 184 (516)
T ss_dssp SCCCHHHH-HHTGGGGTTBCCS-TT---TTTC-----CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHH-CSSCEEE
T ss_pred CcchHHHH-HHHHHHHhccccH-HH---HHhhhhh-hhhccCCCeEEEEECCCccchhhHHHHHHHHHHHHh-cCCCEEE
Confidence 55554322 2222222111000 00 0000000 001246789999999965432 112222211 2344555
Q ss_pred EcCCCC-C------CCCCeEecCCCChHHHHHHHHHhccCCCCCCCCCchHHHHHHHHhcCCch-hHHHHH
Q 042541 302 TSRSEF-P------QFGSVHYLKPLTYEAARTLFLHSANLQDGNSYIPDENIVSKILRACKGCP-LALKVV 364 (695)
Q Consensus 302 TtR~~~-~------~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~G~P-Lai~~~ 364 (695)
++.... . .....+.+++++.++..+.+...+...... -.++....|++.++|.+ .++..+
T Consensus 185 i~~~~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~---i~~~~l~~la~~s~GdiR~~i~~L 252 (516)
T 1sxj_A 185 ICNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFK---LDPNVIDRLIQTTRGDIRQVINLL 252 (516)
T ss_dssp EESCTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTCC---CCTTHHHHHHHHTTTCHHHHHHHH
T ss_pred EEcCCCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCcHHHHHHHH
Confidence 544331 1 122378999999999999988766433221 12456888999999954 445544
No 157
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.51 E-value=1.9e-08 Score=109.22 Aligned_cols=35 Identities=23% Similarity=0.285 Sum_probs=16.2
Q ss_pred CCcEEEeccCCCC-----Ccc-cccccccccEEeeccccCC
Q 042541 602 KLKKIRLEHVSLP-----NSL-ATVRMNHLQKVSLVMCNVG 636 (695)
Q Consensus 602 ~L~~L~L~~~~l~-----~lp-~i~~l~~L~~L~l~~~~i~ 636 (695)
+|++|+|++|.++ .+| .+.++++|++|++++|.++
T Consensus 86 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~ 126 (461)
T 1z7x_W 86 KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLG 126 (461)
T ss_dssp CCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCH
T ss_pred ceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCc
Confidence 3445555554444 223 4444445555555544443
No 158
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.49 E-value=2.1e-07 Score=96.90 Aligned_cols=85 Identities=15% Similarity=0.138 Sum_probs=39.7
Q ss_pred CCceEEEEEEc-cCccccCChhhcCCCCCcEEEEcccCCCCcccCcccccccCCCCcEEEeccCCCCCcc-ccccccccc
Q 042541 549 GPEVKVVVLNI-RTKKYVLPDFLQKMDELKVLIVTNYGFSPAELNNFRVLSALSKLKKIRLEHVSLPNSL-ATVRMNHLQ 626 (695)
Q Consensus 549 ~~~l~~L~l~~-~~~~~~~p~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~lp-~i~~l~~L~ 626 (695)
+++|+.|.|+. |......|..|.++++|+.|+|++|.+... ....++.|++|++|+|++|.+..+| .+.....|+
T Consensus 30 ~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~---~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~L~ 106 (347)
T 2ifg_A 30 AENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFV---APDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQ 106 (347)
T ss_dssp CSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEE---CTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCCCC
T ss_pred CCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCcccee---CHHHhcCCcCCCEEeCCCCccceeCHHHcccCCce
Confidence 34455555553 333333334455555555555555544211 0112445555555555555555555 222222255
Q ss_pred EEeeccccCC
Q 042541 627 KVSLVMCNVG 636 (695)
Q Consensus 627 ~L~l~~~~i~ 636 (695)
+|+|.+|.+.
T Consensus 107 ~l~l~~N~~~ 116 (347)
T 2ifg_A 107 ELVLSGNPLH 116 (347)
T ss_dssp EEECCSSCCC
T ss_pred EEEeeCCCcc
Confidence 5555555544
No 159
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.48 E-value=3.2e-07 Score=89.91 Aligned_cols=166 Identities=16% Similarity=0.141 Sum_probs=100.9
Q ss_pred CCCCCCc---chHHHHHHHHHcCCceEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCCCCCHHHHHHHHHHh
Q 042541 166 VISPGLD---VPLKELKMELFKDGRQFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSKNPNVKAIVQKVLHH 242 (695)
Q Consensus 166 ~~~vGr~---~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~~~~~~~~~~~i~~~ 242 (695)
+.|+|.+ ..++.+..++..+..+.+.|+|++|+||||||+.+++ ....... .+.|++++.....
T Consensus 28 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~la~~l~~--~~~~~~~-~~~~~~~~~~~~~---------- 94 (242)
T 3bos_A 28 TSYYPAAGNDELIGALKSAASGDGVQAIYLWGPVKSGRTHLIHAACA--RANELER-RSFYIPLGIHASI---------- 94 (242)
T ss_dssp TTSCC--CCHHHHHHHHHHHHTCSCSEEEEECSTTSSHHHHHHHHHH--HHHHTTC-CEEEEEGGGGGGS----------
T ss_pred hhccCCCCCHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHH--HHHHcCC-eEEEEEHHHHHHH----------
Confidence 4567633 4455665655555678899999999999999999987 3332222 2668877542110
Q ss_pred cCCCCCCCCChHHHHHHHHHHHHhcCCCcEEEEEeCCCCCChH------HHhhhccC-CCCC-EEEEEcCCCCC---CC-
Q 042541 243 KGYPVPEFQTDEAAINDLERFFKQMRIEAILLVLDDVWPGSES------LLQKLGFQ-LPDY-KILVTSRSEFP---QF- 310 (695)
Q Consensus 243 l~~~~~~~~~~~~~~~~l~~~~~~l~~~~~LlVlDdv~~~~~~------~~~~l~~~-~~gs-~iivTtR~~~~---~~- 310 (695)
+ .+.++.+ .++.+||+||++..... +...+... ..+. ++|+||+.... ..
T Consensus 95 ~-----------------~~~~~~~-~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~~~ 156 (242)
T 3bos_A 95 S-----------------TALLEGL-EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGFVL 156 (242)
T ss_dssp C-----------------GGGGTTG-GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTCCC
T ss_pred H-----------------HHHHHhc-cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHhh
Confidence 0 0001111 34679999998654321 12211111 1232 58888775432 11
Q ss_pred ---------CCeEecCCCChHHHHHHHHHhccCCCCCCCCCchHHHHHHHHhcCCchhHHHHHH
Q 042541 311 ---------GSVHYLKPLTYEAARTLFLHSANLQDGNSYIPDENIVSKILRACKGCPLALKVVG 365 (695)
Q Consensus 311 ---------~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~~ 365 (695)
+..+.+++++.++..+++...+..... .-..+....|++.++|.+..+..+.
T Consensus 157 ~~l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~---~~~~~~~~~l~~~~~g~~r~l~~~l 217 (242)
T 3bos_A 157 PDLVSRMHWGLTYQLQPMMDDEKLAALQRRAAMRGL---QLPEDVGRFLLNRMARDLRTLFDVL 217 (242)
T ss_dssp HHHHHHHHHSEEEECCCCCGGGHHHHHHHHHHHTTC---CCCHHHHHHHHHHTTTCHHHHHHHH
T ss_pred hhhhhHhhcCceEEeCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHccCCHHHHHHHH
Confidence 147899999999999999887643221 1236778899999999887665543
No 160
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.45 E-value=2.7e-08 Score=108.05 Aligned_cols=135 Identities=19% Similarity=0.226 Sum_probs=75.5
Q ss_pred CCCceEEEEEEccCcccc----C-ChhhcCCCCCcEEEEcccCCCCcccCc-ccccccCCCCcEEEeccCCCCCcc--cc
Q 042541 548 QGPEVKVVVLNIRTKKYV----L-PDFLQKMDELKVLIVTNYGFSPAELNN-FRVLSALSKLKKIRLEHVSLPNSL--AT 619 (695)
Q Consensus 548 ~~~~l~~L~l~~~~~~~~----~-p~~~~~l~~Lr~L~l~~~~~~~~~~~~-~~~l~~l~~L~~L~L~~~~l~~lp--~i 619 (695)
.+++|+.|.++.+..... + +..+..+++|++|++++|.+....... ...+..+++|++|++++|.+...+ .+
T Consensus 225 ~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l 304 (461)
T 1z7x_W 225 SKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLL 304 (461)
T ss_dssp HCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHH
T ss_pred hCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHH
Confidence 356777777766633221 1 122335677777777776553222111 122555777777777777765222 22
Q ss_pred cc-----cccccEEeeccccCCccc----ccchhhhcccCCCccEEecccccccccCchhhcC-----CCCCceeecccc
Q 042541 620 VR-----MNHLQKVSLVMCNVGQVF----RNSTFRISDAFPNLLEMDIDYCNDLIELPDGLCD-----IVSMEKLRITNC 685 (695)
Q Consensus 620 ~~-----l~~L~~L~l~~~~i~~~~----~~~~~~l~~~l~~L~~L~l~~c~~l~~lP~~i~~-----L~~L~~L~l~~~ 685 (695)
.. .++|++|++++|.++... +..+. .+++|++|++++|..-..-+..+.. .++|++|++++|
T Consensus 305 ~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~----~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n 380 (461)
T 1z7x_W 305 CETLLEPGCQLESLWVKSCSFTAACCSHFSSVLA----QNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADC 380 (461)
T ss_dssp HHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHH----HCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTS
T ss_pred HHHhccCCccceeeEcCCCCCchHHHHHHHHHHh----hCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCC
Confidence 22 257777777777766532 11122 5678888888876422222333332 668888888887
Q ss_pred c
Q 042541 686 H 686 (695)
Q Consensus 686 ~ 686 (695)
.
T Consensus 381 ~ 381 (461)
T 1z7x_W 381 D 381 (461)
T ss_dssp C
T ss_pred C
Confidence 5
No 161
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.41 E-value=1.2e-06 Score=91.48 Aligned_cols=187 Identities=12% Similarity=0.041 Sum_probs=105.3
Q ss_pred CCCCCCCcchHHHHHHHH-HcCCceEEEEEcCCCCcHHHHHHHHhccccccccCCCc-----------------------
Q 042541 165 PVISPGLDVPLKELKMEL-FKDGRQFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDD----------------------- 220 (695)
Q Consensus 165 ~~~~vGr~~~~~~l~~~L-~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~----------------------- 220 (695)
-+.++|.+..++.+..++ ..+..+.+.|+|+.|+||||+|+.++.. +...-...
T Consensus 13 ~~~~vg~~~~~~~l~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~la~~--l~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~ 90 (354)
T 1sxj_E 13 LNALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLES--IFGPGVYRLKIDVRQFVTASNRKLELNVVSS 90 (354)
T ss_dssp GGGCCSCHHHHHHHHTTTTCTTCCCCEEEECSTTSSHHHHHHTHHHH--HSCTTCCC------------------CCEEC
T ss_pred HHHhcCCHHHHHHHHHHHhhCCCCCeEEEECCCCCCHHHHHHHHHHH--HcCCCCCeEEecceeecccccccceeeeecc
Confidence 356799999999998888 5554444999999999999999988762 11110000
Q ss_pred --EEEEEeCCCC-CHHHHHHHHHHhcCCCCCCCCChHHHHHHHHHHHHhcCCCcEEEEEeCCCCCChH----HHhhhccC
Q 042541 221 --IFYVTVSKNP-NVKAIVQKVLHHKGYPVPEFQTDEAAINDLERFFKQMRIEAILLVLDDVWPGSES----LLQKLGFQ 293 (695)
Q Consensus 221 --~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~~~LlVlDdv~~~~~~----~~~~l~~~ 293 (695)
.+.+..+... ......++++..+....+- .... .+..+.+++-++|+|++...+.. ++..+...
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~----~~~~-----~ls~l~~~~~vlilDE~~~L~~~~~~~L~~~le~~ 161 (354)
T 1sxj_E 91 PYHLEITPSDMGNNDRIVIQELLKEVAQMEQV----DFQD-----SKDGLAHRYKCVIINEANSLTKDAQAALRRTMEKY 161 (354)
T ss_dssp SSEEEECCC----CCHHHHHHHHHHHTTTTC---------------------CCEEEEEECTTSSCHHHHHHHHHHHHHS
T ss_pred cceEEecHhhcCCcchHHHHHHHHHHHHhccc----cccc-----cccccCCCCeEEEEeCccccCHHHHHHHHHHHHhh
Confidence 1111111100 0000122222222110000 0000 00001346779999999876543 33444434
Q ss_pred CCCCEEEEEcCCCCC------CCCCeEecCCCChHHHHHHHHHhccCCCCCCCCCc-hHHHHHHHHhcCCchhHHHHHH
Q 042541 294 LPDYKILVTSRSEFP------QFGSVHYLKPLTYEAARTLFLHSANLQDGNSYIPD-ENIVSKILRACKGCPLALKVVG 365 (695)
Q Consensus 294 ~~gs~iivTtR~~~~------~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~-~~~~~~I~~~c~G~PLai~~~~ 365 (695)
.+++.+|++|..... .-...+++.+++.++..+.+...+...... -. ++.+..|++.++|.+..+..+.
T Consensus 162 ~~~~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~~~~~l~~i~~~~~G~~r~a~~~l 237 (354)
T 1sxj_E 162 SKNIRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERIQ---LETKDILKRIAQASNGNLRVSLLML 237 (354)
T ss_dssp TTTEEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCE---ECCSHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCCCEEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCCC---CCcHHHHHHHHHHcCCCHHHHHHHH
Confidence 456788887766422 112378999999999999998776432211 12 4678899999999987655443
No 162
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.40 E-value=8.1e-07 Score=83.45 Aligned_cols=45 Identities=22% Similarity=0.227 Sum_probs=40.2
Q ss_pred CCCCCCcchHHHHHHHHHcCCceEEEEEcCCCCcHHHHHHHHhcc
Q 042541 166 VISPGLDVPLKELKMELFKDGRQFIVVSAPGGYGKTTLVQRLCKD 210 (695)
Q Consensus 166 ~~~vGr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~~~~~ 210 (695)
+.++||+++++++.+.+.....+.+.|+|++|+|||+||+.+++.
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 22 DPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp CCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHH
T ss_pred cccccchHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999998766778899999999999999999873
No 163
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.40 E-value=6.3e-06 Score=82.34 Aligned_cols=185 Identities=14% Similarity=0.100 Sum_probs=101.7
Q ss_pred CCCCCCcchHHHHHHH-------HH---cCCceEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCCCCCHHHH
Q 042541 166 VISPGLDVPLKELKME-------LF---KDGRQFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSKNPNVKAI 235 (695)
Q Consensus 166 ~~~vGr~~~~~~l~~~-------L~---~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~~~~~~~~ 235 (695)
..++|....++++... +. ....+.+.|+|++|+|||+||+.+++. .. ...+.++.+..
T Consensus 33 ~~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~--~~----~~~~~i~~~~~------ 100 (272)
T 1d2n_A 33 NGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEE--SN----FPFIKICSPDK------ 100 (272)
T ss_dssp TCCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHH--HT----CSEEEEECGGG------
T ss_pred cCCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHH--hC----CCEEEEeCHHH------
Confidence 3578988887777663 32 334578999999999999999999873 21 21334443321
Q ss_pred HHHHHHhcCCCCCCCCChHHHHHHHHHHH-HhcCCCcEEEEEeCCCCC----------ChHHHhhh---ccCC--CC--C
Q 042541 236 VQKVLHHKGYPVPEFQTDEAAINDLERFF-KQMRIEAILLVLDDVWPG----------SESLLQKL---GFQL--PD--Y 297 (695)
Q Consensus 236 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~~-~~l~~~~~LlVlDdv~~~----------~~~~~~~l---~~~~--~g--s 297 (695)
+.+ .........+...+ .....+..+|+|||++.. ...++..+ .... ++ .
T Consensus 101 -------~~g-----~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~ 168 (272)
T 1d2n_A 101 -------MIG-----FSETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKL 168 (272)
T ss_dssp -------CTT-----CCHHHHHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEE
T ss_pred -------hcC-----CchHHHHHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCE
Confidence 110 01222223444455 333467899999997542 22222222 2211 23 3
Q ss_pred EEEEEcCCC--------CCCCCCeEecCCCCh-HHHHHHHHHhccCCCCCCCCCchHHHHHHHHhcCC------chhHHH
Q 042541 298 KILVTSRSE--------FPQFGSVHYLKPLTY-EAARTLFLHSANLQDGNSYIPDENIVSKILRACKG------CPLALK 362 (695)
Q Consensus 298 ~iivTtR~~--------~~~~~~~~~l~~L~~-~ea~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~G------~PLai~ 362 (695)
.||.||... .......+.+++++. ++-..++.+.. .-..+....|++.+.| ++-++.
T Consensus 169 ~ii~ttn~~~~l~~~~l~~rf~~~i~~p~l~~r~~i~~i~~~~~--------~~~~~~~~~l~~~~~g~~~~g~ir~l~~ 240 (272)
T 1d2n_A 169 LIIGTTSRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEALELLG--------NFKDKERTTIAQQVKGKKVWIGIKKLLM 240 (272)
T ss_dssp EEEEEESCHHHHHHTTCTTTSSEEEECCCEEEHHHHHHHHHHHT--------CSCHHHHHHHHHHHTTSEEEECHHHHHH
T ss_pred EEEEecCChhhcchhhhhcccceEEcCCCccHHHHHHHHHHhcC--------CCCHHHHHHHHHHhcCCCccccHHHHHH
Confidence 455566654 112234788999988 66666665431 1135668889998888 344444
Q ss_pred HHHHhhCCCCHHHHHHHHHH
Q 042541 363 VVGGSLCGKHEVFWQRMVKE 382 (695)
Q Consensus 363 ~~~~~L~~~~~~~w~~~l~~ 382 (695)
.+-......+...+...++.
T Consensus 241 ~l~~a~~~~~~~~~~~~~~~ 260 (272)
T 1d2n_A 241 LIEMSLQMDPEYRVRKFLAL 260 (272)
T ss_dssp HHHHHTTSCGGGHHHHHHHH
T ss_pred HHHHHhhhchHHHHHHHHHH
Confidence 44333332333444444443
No 164
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.37 E-value=3.9e-06 Score=86.30 Aligned_cols=167 Identities=16% Similarity=0.111 Sum_probs=101.6
Q ss_pred CCCCCCCcchHHHHHHHHHcCC-ceEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCCCCCHHHHHHHHHHhc
Q 042541 165 PVISPGLDVPLKELKMELFKDG-RQFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSKNPNVKAIVQKVLHHK 243 (695)
Q Consensus 165 ~~~~vGr~~~~~~l~~~L~~~~-~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~~~~~~~~~~~i~~~l 243 (695)
-+.++|.+..++.+..++..+. ..++.+.|++|+|||++|+.+++ .. ...++.++.+.. .... ++..+.
T Consensus 25 ~~~ivg~~~~~~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~la~--~l----~~~~~~i~~~~~-~~~~-i~~~~~-- 94 (324)
T 3u61_B 25 IDECILPAFDKETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCH--DV----NADMMFVNGSDC-KIDF-VRGPLT-- 94 (324)
T ss_dssp TTTSCCCHHHHHHHHHHHHTTCCCSEEEECSSTTSSHHHHHHHHHH--HT----TEEEEEEETTTC-CHHH-HHTHHH--
T ss_pred HHHHhCcHHHHHHHHHHHHcCCCCeEEEeeCcCCCCHHHHHHHHHH--Hh----CCCEEEEccccc-CHHH-HHHHHH--
Confidence 3568999999999999998655 46778888899999999999987 33 222455654432 1221 111111
Q ss_pred CCCCCCCCChHHHHHHHHHHHHh--cCCCcEEEEEeCCCCCC-hH----HHhhhccCCCCCEEEEEcCCCCCCC------
Q 042541 244 GYPVPEFQTDEAAINDLERFFKQ--MRIEAILLVLDDVWPGS-ES----LLQKLGFQLPDYKILVTSRSEFPQF------ 310 (695)
Q Consensus 244 ~~~~~~~~~~~~~~~~l~~~~~~--l~~~~~LlVlDdv~~~~-~~----~~~~l~~~~~gs~iivTtR~~~~~~------ 310 (695)
..... ..+++.++++||++... .. ++..+.....++.+|+||.......
T Consensus 95 ------------------~~~~~~~~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~sR 156 (324)
T 3u61_B 95 ------------------NFASAASFDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQSR 156 (324)
T ss_dssp ------------------HHHHBCCCSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHHH
T ss_pred ------------------HHHhhcccCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHhh
Confidence 11111 13478899999998765 33 2222222234678888887653211
Q ss_pred CCeEecCCCChHHHHHH-------HHHhccCCCCCCCCCch-HHHHHHHHhcCCchhHHH
Q 042541 311 GSVHYLKPLTYEAARTL-------FLHSANLQDGNSYIPDE-NIVSKILRACKGCPLALK 362 (695)
Q Consensus 311 ~~~~~l~~L~~~ea~~L-------f~~~~~~~~~~~~~~~~-~~~~~I~~~c~G~PLai~ 362 (695)
...+.+++++.++-.++ +...+..... . -.. +....|++.++|.+..+.
T Consensus 157 ~~~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~--~-~~~~~~~~~l~~~~~gd~R~a~ 213 (324)
T 3u61_B 157 CRVITFGQPTDEDKIEMMKQMIRRLTEICKHEGI--A-IADMKVVAALVKKNFPDFRKTI 213 (324)
T ss_dssp SEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHTC--C-BSCHHHHHHHHHHTCSCTTHHH
T ss_pred CcEEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCC--C-CCcHHHHHHHHHhCCCCHHHHH
Confidence 12789999998874333 2222221111 1 123 778889999998876443
No 165
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.36 E-value=7.1e-06 Score=82.55 Aligned_cols=171 Identities=14% Similarity=0.140 Sum_probs=100.8
Q ss_pred CCCCCCCcchHHHHHHHHHc-------------CCceEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCCCCC
Q 042541 165 PVISPGLDVPLKELKMELFK-------------DGRQFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSKNPN 231 (695)
Q Consensus 165 ~~~~vGr~~~~~~l~~~L~~-------------~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~~~~ 231 (695)
-+.++|.+..+++|.+.+.. ...+-+.|+|++|+|||+||+.+++. . ....+.++.+...
T Consensus 16 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~--~----~~~~~~v~~~~~~- 88 (285)
T 3h4m_A 16 YEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATE--T----NATFIRVVGSELV- 88 (285)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHH--T----TCEEEEEEGGGGC-
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHH--h----CCCEEEEehHHHH-
Confidence 35689999999999887752 34567999999999999999999873 2 2223344432211
Q ss_pred HHHHHHHHHHhcCCCCCCCCChHHHHHHHHHHH-HhcCCCcEEEEEeCCCCC-----------ChH-------HHhhhc-
Q 042541 232 VKAIVQKVLHHKGYPVPEFQTDEAAINDLERFF-KQMRIEAILLVLDDVWPG-----------SES-------LLQKLG- 291 (695)
Q Consensus 232 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~-~~l~~~~~LlVlDdv~~~-----------~~~-------~~~~l~- 291 (695)
.. ........+...+ .....++.+|+|||++.. ... ++..+.
T Consensus 89 -------------~~-----~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~ 150 (285)
T 3h4m_A 89 -------------KK-----FIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDG 150 (285)
T ss_dssp -------------CC-----STTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHT
T ss_pred -------------Hh-----ccchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhC
Confidence 00 0111122233333 222456789999998542 111 112221
Q ss_pred -cCCCCCEEEEEcCCCC-------C--CCCCeEecCCCChHHHHHHHHHhccCCCCCCCCCchHHHHHHHHhcCC-chhH
Q 042541 292 -FQLPDYKILVTSRSEF-------P--QFGSVHYLKPLTYEAARTLFLHSANLQDGNSYIPDENIVSKILRACKG-CPLA 360 (695)
Q Consensus 292 -~~~~gs~iivTtR~~~-------~--~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~G-~PLa 360 (695)
....+..||.||.... . .....+.+++.+.++..+++...+...... .......|++.+.| .|-.
T Consensus 151 ~~~~~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~----~~~~~~~l~~~~~g~~~~~ 226 (285)
T 3h4m_A 151 FDARGDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLA----EDVNLEEIAKMTEGCVGAE 226 (285)
T ss_dssp TCSSSSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBC----TTCCHHHHHHHCTTCCHHH
T ss_pred CCCCCCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCC----CcCCHHHHHHHcCCCCHHH
Confidence 1223556777776541 1 222378999999999999998876543221 11225677788877 4544
Q ss_pred HHHH
Q 042541 361 LKVV 364 (695)
Q Consensus 361 i~~~ 364 (695)
|..+
T Consensus 227 i~~l 230 (285)
T 3h4m_A 227 LKAI 230 (285)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 166
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.31 E-value=1.3e-05 Score=85.64 Aligned_cols=170 Identities=16% Similarity=0.156 Sum_probs=102.9
Q ss_pred CCCCCCCcchH---HHHHHHHHcCCceEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCCC-CCHHHHHHHHH
Q 042541 165 PVISPGLDVPL---KELKMELFKDGRQFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSKN-PNVKAIVQKVL 240 (695)
Q Consensus 165 ~~~~vGr~~~~---~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~~-~~~~~~~~~i~ 240 (695)
-+.+||.+..+ ..+...+..+....+.|+|++|+||||||+.+++ ..... ++.++.. ....++ +.++
T Consensus 25 l~~ivGq~~~~~~~~~L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~--~~~~~------f~~l~a~~~~~~~i-r~~~ 95 (447)
T 3pvs_A 25 LAQYIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIAR--YANAD------VERISAVTSGVKEI-REAI 95 (447)
T ss_dssp TTTCCSCHHHHSTTSHHHHHHHHTCCCEEEEECSTTSSHHHHHHHHHH--HTTCE------EEEEETTTCCHHHH-HHHH
T ss_pred HHHhCCcHHHHhchHHHHHHHHcCCCcEEEEECCCCCcHHHHHHHHHH--HhCCC------eEEEEeccCCHHHH-HHHH
Confidence 35679998887 7788888877778899999999999999999987 33222 3333321 122211 1111
Q ss_pred HhcCCCCCCCCChHHHHHHHHHHHHhcCCCcEEEEEeCCCCCChH----HHhhhccCCCCCEEEE-EcCCCCCC------
Q 042541 241 HHKGYPVPEFQTDEAAINDLERFFKQMRIEAILLVLDDVWPGSES----LLQKLGFQLPDYKILV-TSRSEFPQ------ 309 (695)
Q Consensus 241 ~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~~~LlVlDdv~~~~~~----~~~~l~~~~~gs~iiv-TtR~~~~~------ 309 (695)
.. ... ....+++.+|++|+++..... ++..+.. ....+|. ||.+....
T Consensus 96 ~~-----------------a~~--~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~--~~v~lI~att~n~~~~l~~aL~ 154 (447)
T 3pvs_A 96 ER-----------------ARQ--NRNAGRRTILFVDEVHRFNKSQQDAFLPHIED--GTITFIGATTENPSFELNSALL 154 (447)
T ss_dssp HH-----------------HHH--HHHTTCCEEEEEETTTCC------CCHHHHHT--TSCEEEEEESSCGGGSSCHHHH
T ss_pred HH-----------------HHH--hhhcCCCcEEEEeChhhhCHHHHHHHHHHHhc--CceEEEecCCCCcccccCHHHh
Confidence 11 111 111467899999999766432 2222222 2234444 44443211
Q ss_pred -CCCeEecCCCChHHHHHHHHHhccCCCCC---C-CCCchHHHHHHHHhcCCchhHHHHH
Q 042541 310 -FGSVHYLKPLTYEAARTLFLHSANLQDGN---S-YIPDENIVSKILRACKGCPLALKVV 364 (695)
Q Consensus 310 -~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~---~-~~~~~~~~~~I~~~c~G~PLai~~~ 364 (695)
-...+.+.+++.++...++.+.+...... . ..-..+....|++.++|.+..+..+
T Consensus 155 sR~~v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~lln~ 214 (447)
T 3pvs_A 155 SRARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNT 214 (447)
T ss_dssp TTEEEEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHHHH
T ss_pred CceeEEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHHHH
Confidence 11278899999999999998876542111 1 1123677889999999988755544
No 167
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.29 E-value=4.4e-06 Score=89.39 Aligned_cols=175 Identities=18% Similarity=0.194 Sum_probs=104.3
Q ss_pred CCC-CCcch--HHHHHHHHHcCC-ceEEEEEcCCCCcHHHHHHHHhccccccccC-CCcEEEEEeCCCCCHHHHHHHHHH
Q 042541 167 ISP-GLDVP--LKELKMELFKDG-RQFIVVSAPGGYGKTTLVQRLCKDDQVQGKF-KDDIFYVTVSKNPNVKAIVQKVLH 241 (695)
Q Consensus 167 ~~v-Gr~~~--~~~l~~~L~~~~-~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f-~~~~~wv~~~~~~~~~~~~~~i~~ 241 (695)
.|| |.... ...+......++ ...+.|+|++|+||||||+.+++ .....+ ...+++++... +...+..
T Consensus 106 ~fv~g~~n~~a~~~~~~~a~~~~~~~~lll~Gp~G~GKTtLa~aia~--~l~~~~~~~~v~~v~~~~------~~~~~~~ 177 (440)
T 2z4s_A 106 NFVVGPGNSFAYHAALEVAKHPGRYNPLFIYGGVGLGKTHLLQSIGN--YVVQNEPDLRVMYITSEK------FLNDLVD 177 (440)
T ss_dssp GCCCCTTTHHHHHHHHHHHHSTTSSCCEEEECSSSSSHHHHHHHHHH--HHHHHCCSSCEEEEEHHH------HHHHHHH
T ss_pred hcCCCCchHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHH--HHHHhCCCCeEEEeeHHH------HHHHHHH
Confidence 344 75543 333334443433 57899999999999999999998 444433 33355665443 3444444
Q ss_pred hcCCCCCCCCChHHHHHHHHHHHHhcCCCcEEEEEeCCCCCCh--H----HHhhhcc-CCCCCEEEEEcCCCCC------
Q 042541 242 HKGYPVPEFQTDEAAINDLERFFKQMRIEAILLVLDDVWPGSE--S----LLQKLGF-QLPDYKILVTSRSEFP------ 308 (695)
Q Consensus 242 ~l~~~~~~~~~~~~~~~~l~~~~~~l~~~~~LlVlDdv~~~~~--~----~~~~l~~-~~~gs~iivTtR~~~~------ 308 (695)
.+... . ...+...++.+..+|++||++.... . ++..+.. ...|..||+||.....
T Consensus 178 ~~~~~-----~-------~~~~~~~~~~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~ 245 (440)
T 2z4s_A 178 SMKEG-----K-------LNEFREKYRKKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQ 245 (440)
T ss_dssp HHHTT-----C-------HHHHHHHHTTTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCC
T ss_pred HHHcc-----c-------HHHHHHHhcCCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHH
Confidence 43221 0 1112233333678999999965431 1 2222221 2357789998886421
Q ss_pred -------CCCCeEecCCCChHHHHHHHHHhccCCCCCCCCCchHHHHHHHHhcCCchhHHHHH
Q 042541 309 -------QFGSVHYLKPLTYEAARTLFLHSANLQDGNSYIPDENIVSKILRACKGCPLALKVV 364 (695)
Q Consensus 309 -------~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~ 364 (695)
..+..+.+++++.++-.+++.+.+...... -..+....|++.++|.+..+.-+
T Consensus 246 ~~L~sR~~~g~~i~l~~p~~e~r~~iL~~~~~~~~~~---i~~e~l~~la~~~~gn~R~l~~~ 305 (440)
T 2z4s_A 246 DRLVSRFQMGLVAKLEPPDEETRKSIARKMLEIEHGE---LPEEVLNFVAENVDDNLRRLRGA 305 (440)
T ss_dssp HHHHHHHHSSBCCBCCCCCHHHHHHHHHHHHHHHTCC---CCTTHHHHHHHHCCSCHHHHHHH
T ss_pred HHHHhhccCCeEEEeCCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHhcCCCHHHHHHH
Confidence 113468899999999999998876432211 12456788999999988655433
No 168
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=98.28 E-value=1.4e-05 Score=82.41 Aligned_cols=162 Identities=17% Similarity=0.172 Sum_probs=100.1
Q ss_pred cchHHHHHHHHHcCC-ceEEEEEcCCCCcHHHHHHHHhccccccccC---------------------CCcEEEEEeC--
Q 042541 172 DVPLKELKMELFKDG-RQFIVVSAPGGYGKTTLVQRLCKDDQVQGKF---------------------KDDIFYVTVS-- 227 (695)
Q Consensus 172 ~~~~~~l~~~L~~~~-~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f---------------------~~~~~wv~~~-- 227 (695)
++..+.+...+..+. ...+.++|+.|+|||++|+.+++. +.... .. +.++...
T Consensus 8 ~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~--l~~~~~~~~~~c~~c~~c~~~~~~~~~d-~~~~~~~~~ 84 (334)
T 1a5t_A 8 RPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRY--LLCQQPQGHKSCGHCRGCQLMQAGTHPD-YYTLAPEKG 84 (334)
T ss_dssp HHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHH--HTCSSCBTTBCCSCSHHHHHHHHTCCTT-EEEECCCTT
T ss_pred HHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHHHHH--HhCCCCCCCCCCCCCHHHHHHhcCCCCC-EEEEecccc
Confidence 445667777777655 457999999999999999998763 21111 11 2333221
Q ss_pred -CCCCHHHHHHHHHHhcCCCCCCCCChHHHHHHHHHHHHhcCCCcEEEEEeCCCCCChH----HHhhhccCCCCCEEEEE
Q 042541 228 -KNPNVKAIVQKVLHHKGYPVPEFQTDEAAINDLERFFKQMRIEAILLVLDDVWPGSES----LLQKLGFQLPDYKILVT 302 (695)
Q Consensus 228 -~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~~~LlVlDdv~~~~~~----~~~~l~~~~~gs~iivT 302 (695)
....+.. .+++.+.+... ...+++-++|+|+++..... ++..+....+++.+|++
T Consensus 85 ~~~~~i~~-ir~l~~~~~~~-------------------~~~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~ 144 (334)
T 1a5t_A 85 KNTLGVDA-VREVTEKLNEH-------------------ARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLA 144 (334)
T ss_dssp CSSBCHHH-HHHHHHHTTSC-------------------CTTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEE
T ss_pred CCCCCHHH-HHHHHHHHhhc-------------------cccCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEE
Confidence 1111111 11222222111 01366889999999876533 44555555556777777
Q ss_pred cCCCCC------CCCCeEecCCCChHHHHHHHHHhccCCCCCCCCCchHHHHHHHHhcCCchhHHHHH
Q 042541 303 SRSEFP------QFGSVHYLKPLTYEAARTLFLHSANLQDGNSYIPDENIVSKILRACKGCPLALKVV 364 (695)
Q Consensus 303 tR~~~~------~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~ 364 (695)
|..... .-...+.+.+++.++..+.+.... .-..+.+..+++.++|.|..+..+
T Consensus 145 t~~~~~l~~ti~SRc~~~~~~~~~~~~~~~~L~~~~--------~~~~~~~~~l~~~s~G~~r~a~~~ 204 (334)
T 1a5t_A 145 TREPERLLATLRSRCRLHYLAPPPEQYAVTWLSREV--------TMSQDALLAALRLSAGSPGAALAL 204 (334)
T ss_dssp ESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHC--------CCCHHHHHHHHHHTTTCHHHHHHT
T ss_pred eCChHhCcHHHhhcceeeeCCCCCHHHHHHHHHHhc--------CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 765421 122378999999999999998775 113566788999999999765443
No 169
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.26 E-value=1.8e-07 Score=104.98 Aligned_cols=134 Identities=16% Similarity=0.175 Sum_probs=68.9
Q ss_pred CCceEEEEEEccCccccCChhhc-CCCCCcEEEEcccC-CCCcccCcccccccCCCCcEEEeccCCCCC-----cc-ccc
Q 042541 549 GPEVKVVVLNIRTKKYVLPDFLQ-KMDELKVLIVTNYG-FSPAELNNFRVLSALSKLKKIRLEHVSLPN-----SL-ATV 620 (695)
Q Consensus 549 ~~~l~~L~l~~~~~~~~~p~~~~-~l~~Lr~L~l~~~~-~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~-----lp-~i~ 620 (695)
+++|+.|.++.+......+..+. .+++|++|++.+|. +....+.. ...++++|++|+|++|.++. ++ ...
T Consensus 104 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~--~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~ 181 (594)
T 2p1m_B 104 YTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAA--IAATCRNLKELDLRESDVDDVSGHWLSHFPD 181 (594)
T ss_dssp CTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHH--HHHHCTTCCEEECTTCEEECCCGGGGGGSCT
T ss_pred CCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHH--HHHhCCCCCEEeCcCCccCCcchHHHHHHhh
Confidence 45666666666544333333333 46667777766652 21111111 13356667777776665432 22 223
Q ss_pred ccccccEEeeccccCCcccccchhhhcccCCCccEEecccccccccCchhhcCCCCCceeecccc
Q 042541 621 RMNHLQKVSLVMCNVGQVFRNSTFRISDAFPNLLEMDIDYCNDLIELPDGLCDIVSMEKLRITNC 685 (695)
Q Consensus 621 ~l~~L~~L~l~~~~i~~~~~~~~~~l~~~l~~L~~L~l~~c~~l~~lP~~i~~L~~L~~L~l~~~ 685 (695)
.+++|++|++++|. ..+....+..+...+++|++|++++|..+..+|..+.++++|++|++.+|
T Consensus 182 ~~~~L~~L~l~~~~-~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~ 245 (594)
T 2p1m_B 182 TYTSLVSLNISCLA-SEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGY 245 (594)
T ss_dssp TCCCCCEEECTTCC-SCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBC
T ss_pred cCCcCcEEEecccC-CcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccc
Confidence 45566777776665 22222222111114566777777666555556666666666666665443
No 170
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.23 E-value=1.1e-07 Score=99.65 Aligned_cols=136 Identities=15% Similarity=0.130 Sum_probs=75.9
Q ss_pred CceEEEEEEccCccccC-ChhhcCCCCCcEEEEcccCCCCcccCccc-cc-ccCCCCcEEEeccCCCCC-----cc-ccc
Q 042541 550 PEVKVVVLNIRTKKYVL-PDFLQKMDELKVLIVTNYGFSPAELNNFR-VL-SALSKLKKIRLEHVSLPN-----SL-ATV 620 (695)
Q Consensus 550 ~~l~~L~l~~~~~~~~~-p~~~~~l~~Lr~L~l~~~~~~~~~~~~~~-~l-~~l~~L~~L~L~~~~l~~-----lp-~i~ 620 (695)
++|+.|.|+.|.....- ......+++|+.|+|++|.+.......+. .+ ...++|+.|+|++|.++. ++ .+.
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~ 180 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLA 180 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHH
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHh
Confidence 45666666666432211 11223345677788877766432221111 11 235667888888877753 33 445
Q ss_pred ccccccEEeeccccCCcccccchhhhcccCCCccEEecccccccc-----cCchhhcCCCCCceeeccccc
Q 042541 621 RMNHLQKVSLVMCNVGQVFRNSTFRISDAFPNLLEMDIDYCNDLI-----ELPDGLCDIVSMEKLRITNCH 686 (695)
Q Consensus 621 ~l~~L~~L~l~~~~i~~~~~~~~~~l~~~l~~L~~L~l~~c~~l~-----~lP~~i~~L~~L~~L~l~~~~ 686 (695)
.+++|++|+|++|.++......+...-...++|++|+|++|. +. .++..+...++|++|+|++|.
T Consensus 181 ~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~-i~~~g~~~l~~~L~~~~~L~~L~Ls~N~ 250 (372)
T 3un9_A 181 GNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNG-AGDTAALALARAAREHPSLELLHLYFNE 250 (372)
T ss_dssp TCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSC-CCHHHHHHHHHHHHHCSSCCEEECTTSS
T ss_pred cCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCC-CCHHHHHHHHHHHHhCCCCCEEeccCCC
Confidence 677788888888776542211110000156678888887764 33 244555666778888887765
No 171
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.21 E-value=5.7e-05 Score=74.74 Aligned_cols=172 Identities=11% Similarity=0.093 Sum_probs=97.9
Q ss_pred CCCCCCcchHHHHHHHHH---c---------CCceEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCCCCCHH
Q 042541 166 VISPGLDVPLKELKMELF---K---------DGRQFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSKNPNVK 233 (695)
Q Consensus 166 ~~~vGr~~~~~~l~~~L~---~---------~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~~~~~~ 233 (695)
+.++|.+..++.+.+++. . ...+-|.|+|++|+|||++|+.+++ ... ...+.++.+...+
T Consensus 6 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~--~~~----~~~~~~~~~~~~~-- 77 (262)
T 2qz4_A 6 KDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVAT--EAQ----VPFLAMAGAEFVE-- 77 (262)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHH--HHT----CCEEEEETTTTSS--
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHH--HhC----CCEEEechHHHHh--
Confidence 457999988877766543 1 2245688999999999999999987 332 2244555544211
Q ss_pred HHHHHHHHhcCCCCCCCCChHHHHHHHHHHH-HhcCCCcEEEEEeCCCCCC---------------hH----HHhhhccC
Q 042541 234 AIVQKVLHHKGYPVPEFQTDEAAINDLERFF-KQMRIEAILLVLDDVWPGS---------------ES----LLQKLGFQ 293 (695)
Q Consensus 234 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~-~~l~~~~~LlVlDdv~~~~---------------~~----~~~~l~~~ 293 (695)
.. .......+..++ ......+.+|++||++... .. ++..+...
T Consensus 78 --------~~---------~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~ 140 (262)
T 2qz4_A 78 --------VI---------GGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGM 140 (262)
T ss_dssp --------SS---------TTHHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTC
T ss_pred --------hc---------cChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCc
Confidence 00 011122333444 2223567999999997541 01 22222211
Q ss_pred --CCCCEEEEEcCCCC------C---CCCCeEecCCCChHHHHHHHHHhccCCCCCCCCCchHHHHHHHHhcCCchh-HH
Q 042541 294 --LPDYKILVTSRSEF------P---QFGSVHYLKPLTYEAARTLFLHSANLQDGNSYIPDENIVSKILRACKGCPL-AL 361 (695)
Q Consensus 294 --~~gs~iivTtR~~~------~---~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PL-ai 361 (695)
..+..||.||.... . .....+.++..+.++-.+++...+..... ..........+++.+.|.+- .|
T Consensus 141 ~~~~~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~--~~~~~~~~~~l~~~~~g~~~~~l 218 (262)
T 2qz4_A 141 GTTDHVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKL--TQSSTFYSQRLAELTPGFSGADI 218 (262)
T ss_dssp CTTCCEEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTC--CBTHHHHHHHHHHTCTTCCHHHH
T ss_pred CCCCCEEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCC--CcchhhHHHHHHHHCCCCCHHHH
Confidence 22445666665431 1 23347889999999999999876643222 11112235788888888754 44
Q ss_pred HHH
Q 042541 362 KVV 364 (695)
Q Consensus 362 ~~~ 364 (695)
..+
T Consensus 219 ~~l 221 (262)
T 2qz4_A 219 ANI 221 (262)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 172
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.20 E-value=2.7e-06 Score=87.66 Aligned_cols=87 Identities=8% Similarity=0.102 Sum_probs=75.4
Q ss_pred CCCCcEEEeccCCCCCcc--cccccccccEEeeccccCCcccccchhhhcccCCCcc-EEecccccccccCc-hhhcCCC
Q 042541 600 LSKLKKIRLEHVSLPNSL--ATVRMNHLQKVSLVMCNVGQVFRNSTFRISDAFPNLL-EMDIDYCNDLIELP-DGLCDIV 675 (695)
Q Consensus 600 l~~L~~L~L~~~~l~~lp--~i~~l~~L~~L~l~~~~i~~~~~~~~~~l~~~l~~L~-~L~l~~c~~l~~lP-~~i~~L~ 675 (695)
+++|+.|+|.+|+++.+| .+.++.+|+.|+|..| ++.+++..|. .+++|+ .+++.+ .+..++ ..|.+++
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~----~~~~L~~~l~l~~--~l~~I~~~aF~~c~ 297 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFS----NCGRLAGTLELPA--SVTAIEFGAFMGCD 297 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTT----TCTTCCEEEEECT--TCCEECTTTTTTCT
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhh----CChhccEEEEEcc--cceEEchhhhhCCc
Confidence 789999999999999999 8999999999999998 8888888887 899999 999987 577776 4589999
Q ss_pred CCceeecccccCCCCCCCC
Q 042541 676 SMEKLRITNCHRLSALPEG 694 (695)
Q Consensus 676 ~L~~L~l~~~~~l~~lP~~ 694 (695)
+|+.|++++++ +..+|.+
T Consensus 298 ~L~~l~l~~n~-i~~I~~~ 315 (329)
T 3sb4_A 298 NLRYVLATGDK-ITTLGDE 315 (329)
T ss_dssp TEEEEEECSSC-CCEECTT
T ss_pred cCCEEEeCCCc-cCccchh
Confidence 99999998754 7777653
No 173
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.19 E-value=1.3e-06 Score=97.80 Aligned_cols=131 Identities=13% Similarity=0.012 Sum_probs=67.7
Q ss_pred CCCceEEEEEEccCccccCChhhcCCCCCcEEEEcccCCCCcccCcccccccCCCCcEEEeccCCCCCcc-ccccccccc
Q 042541 548 QGPEVKVVVLNIRTKKYVLPDFLQKMDELKVLIVTNYGFSPAELNNFRVLSALSKLKKIRLEHVSLPNSL-ATVRMNHLQ 626 (695)
Q Consensus 548 ~~~~l~~L~l~~~~~~~~~p~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~lp-~i~~l~~L~ 626 (695)
.+++|+.|.+..+... .+|..+..+++|+.|++..+.........+..+..+++|+.|++.++....+| .+..+++|+
T Consensus 218 ~~~~L~~L~L~~~~~~-~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~ 296 (592)
T 3ogk_B 218 NCRSLVSVKVGDFEIL-ELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIR 296 (592)
T ss_dssp HCTTCCEEECSSCBGG-GGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCC
T ss_pred hCCCCcEEeccCccHH-HHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCc
Confidence 4567777777665332 25566667777777777643221111112223555666666666665555666 666677777
Q ss_pred EEeeccccCCcccc-cchhhhcccCCCccEEecccccccccCchhhcCCCCCceeecc
Q 042541 627 KVSLVMCNVGQVFR-NSTFRISDAFPNLLEMDIDYCNDLIELPDGLCDIVSMEKLRIT 683 (695)
Q Consensus 627 ~L~l~~~~i~~~~~-~~~~~l~~~l~~L~~L~l~~c~~l~~lP~~i~~L~~L~~L~l~ 683 (695)
+|+|++|.++.... .... .+++|++|++++|..-..++.-+..+++|++|+++
T Consensus 297 ~L~Ls~~~l~~~~~~~~~~----~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~ 350 (592)
T 3ogk_B 297 KLDLLYALLETEDHCTLIQ----KCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIE 350 (592)
T ss_dssp EEEETTCCCCHHHHHHHHT----TCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEE
T ss_pred EEecCCCcCCHHHHHHHHH----hCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEee
Confidence 77777766432211 1111 45555555555332222233333444555555555
No 174
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.18 E-value=5.4e-05 Score=79.18 Aligned_cols=193 Identities=7% Similarity=-0.027 Sum_probs=103.6
Q ss_pred CCCCCCCcchHHHH---HHHHHcCC--ceEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCC----CCCHHHH
Q 042541 165 PVISPGLDVPLKEL---KMELFKDG--RQFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSK----NPNVKAI 235 (695)
Q Consensus 165 ~~~~vGr~~~~~~l---~~~L~~~~--~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~----~~~~~~~ 235 (695)
-+.+||++..++.+ ...+..+. .+.+.|+|++|+|||++|+.+++ ......+ .+.+.... .....+.
T Consensus 43 ~~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~--~l~~~~~--~~~~~~~~~~~~~~~~~~~ 118 (368)
T 3uk6_A 43 SQGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQ--ALGPDTP--FTAIAGSEIFSLEMSKTEA 118 (368)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHH--HHCSSCC--EEEEEGGGGSCSSSCHHHH
T ss_pred hhhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHH--HhcccCC--cccccchhhhhcccchhHH
Confidence 34689999887764 44444443 35899999999999999999998 3332222 22333222 2334444
Q ss_pred HHHHHHhcCC-C--------------------C-------CC--CCChHHHHHHHHHHHHh--cCCC----cEEEEEeCC
Q 042541 236 VQKVLHHKGY-P--------------------V-------PE--FQTDEAAINDLERFFKQ--MRIE----AILLVLDDV 279 (695)
Q Consensus 236 ~~~i~~~l~~-~--------------------~-------~~--~~~~~~~~~~l~~~~~~--l~~~----~~LlVlDdv 279 (695)
+.+.+..... . . .. ..........+...... ..++ +.+|++|++
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl~IDEi 198 (368)
T 3uk6_A 119 LTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFIDEV 198 (368)
T ss_dssp HHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCEEEEESG
T ss_pred HHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCceEEEhhc
Confidence 4444333110 0 0 00 00011222222222211 1233 469999999
Q ss_pred CCCChHHHhhh---ccCCCCCEEEEEcCCC-----------CCCC-------CCeEecCCCChHHHHHHHHHhccCCCCC
Q 042541 280 WPGSESLLQKL---GFQLPDYKILVTSRSE-----------FPQF-------GSVHYLKPLTYEAARTLFLHSANLQDGN 338 (695)
Q Consensus 280 ~~~~~~~~~~l---~~~~~gs~iivTtR~~-----------~~~~-------~~~~~l~~L~~~ea~~Lf~~~~~~~~~~ 338 (695)
..........+ ....+...++++|... .... ...+.+++++.++..+++...+.....
T Consensus 199 ~~l~~~~~~~L~~~le~~~~~~~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~il~~~~~~~~~- 277 (368)
T 3uk6_A 199 HMLDIESFSFLNRALESDMAPVLIMATNRGITRIRGTSYQSPHGIPIDLLDRLLIVSTTPYSEKDTKQILRIRCEEEDV- 277 (368)
T ss_dssp GGSBHHHHHHHHHHTTCTTCCEEEEEESCSEEECBTSSCEEETTCCHHHHTTEEEEEECCCCHHHHHHHHHHHHHHTTC-
T ss_pred cccChHHHHHHHHHhhCcCCCeeeeecccceeeeeccCCCCcccCCHHHHhhccEEEecCCCHHHHHHHHHHHHHHcCC-
Confidence 87654422222 2222223344444311 0000 115789999999999999977653222
Q ss_pred CCCCchHHHHHHHHhcC-CchhHHHHH
Q 042541 339 SYIPDENIVSKILRACK-GCPLALKVV 364 (695)
Q Consensus 339 ~~~~~~~~~~~I~~~c~-G~PLai~~~ 364 (695)
.-..+....|++.+. |.|..+..+
T Consensus 278 --~~~~~~l~~l~~~~~~G~~r~~~~l 302 (368)
T 3uk6_A 278 --EMSEDAYTVLTRIGLETSLRYAIQL 302 (368)
T ss_dssp --CBCHHHHHHHHHHHHHSCHHHHHHH
T ss_pred --CCCHHHHHHHHHHhcCCCHHHHHHH
Confidence 123677888999997 777655544
No 175
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.17 E-value=3.7e-07 Score=102.47 Aligned_cols=116 Identities=12% Similarity=0.199 Sum_probs=84.0
Q ss_pred hcCCCCCcEEEEcccCCCCcccCcccccc-cCCCCcEEEeccC-CCCC--cc-cccccccccEEeeccccCCcccccchh
Q 042541 570 LQKMDELKVLIVTNYGFSPAELNNFRVLS-ALSKLKKIRLEHV-SLPN--SL-ATVRMNHLQKVSLVMCNVGQVFRNSTF 644 (695)
Q Consensus 570 ~~~l~~Lr~L~l~~~~~~~~~~~~~~~l~-~l~~L~~L~L~~~-~l~~--lp-~i~~l~~L~~L~l~~~~i~~~~~~~~~ 644 (695)
...+++|+.|++++|.+....+ ..+. .+++|++|+|.+| .+.. ++ .+.++++|++|+|++|.++...+..+.
T Consensus 101 ~~~~~~L~~L~L~~~~~~~~~~---~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~ 177 (594)
T 2p1m_B 101 SSSYTWLEEIRLKRMVVTDDCL---ELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLS 177 (594)
T ss_dssp HHHCTTCCEEEEESCBCCHHHH---HHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGG
T ss_pred HHhCCCCCeEEeeCcEEcHHHH---HHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHH
Confidence 4578899999999987643222 2243 6899999999998 5553 56 556899999999999987765544444
Q ss_pred hhcccCCCccEEeccccc-cc--ccCchhhcCCCCCceeecccccCC
Q 042541 645 RISDAFPNLLEMDIDYCN-DL--IELPDGLCDIVSMEKLRITNCHRL 688 (695)
Q Consensus 645 ~l~~~l~~L~~L~l~~c~-~l--~~lP~~i~~L~~L~~L~l~~~~~l 688 (695)
.++..+++|+.|++++|. .+ ..++.-+.++++|++|++++|..+
T Consensus 178 ~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~ 224 (594)
T 2p1m_B 178 HFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPL 224 (594)
T ss_dssp GSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCH
T ss_pred HHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcH
Confidence 444478899999999985 11 112222456799999999998443
No 176
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.16 E-value=1.4e-05 Score=82.75 Aligned_cols=171 Identities=12% Similarity=0.136 Sum_probs=103.3
Q ss_pred CCCCCCcchHHHHHHHHHcCCceEEEEEcCCCCcHHHHHHHHhcccccc-ccCCCcEEEEEeCCCCCHHHHHHHHHHhcC
Q 042541 166 VISPGLDVPLKELKMELFKDGRQFIVVSAPGGYGKTTLVQRLCKDDQVQ-GKFKDDIFYVTVSKNPNVKAIVQKVLHHKG 244 (695)
Q Consensus 166 ~~~vGr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~-~~f~~~~~wv~~~~~~~~~~~~~~i~~~l~ 244 (695)
..++|.+..++.|...+..++.+.+.++|+.|+||||+|+.+++. +. ..+...+.-++.+.......+. ++
T Consensus 25 ~~~~g~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~--l~~~~~~~~~~~~~~~~~~~~~~ir-~~----- 96 (340)
T 1sxj_C 25 DEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALARE--IYGKNYSNMVLELNASDDRGIDVVR-NQ----- 96 (340)
T ss_dssp GGCCSCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHH--HHTTSHHHHEEEECTTSCCSHHHHH-TH-----
T ss_pred HHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHH--HcCCCccceEEEEcCcccccHHHHH-HH-----
Confidence 456898888888888888776555899999999999999999873 21 1111112233333222221111 11
Q ss_pred CCCCCCCChHHHHHHHHHHHHh---cCCCcEEEEEeCCCCCChH----HHhhhccCCCCCEEEEEcCCCCC------CCC
Q 042541 245 YPVPEFQTDEAAINDLERFFKQ---MRIEAILLVLDDVWPGSES----LLQKLGFQLPDYKILVTSRSEFP------QFG 311 (695)
Q Consensus 245 ~~~~~~~~~~~~~~~l~~~~~~---l~~~~~LlVlDdv~~~~~~----~~~~l~~~~~gs~iivTtR~~~~------~~~ 311 (695)
+....+. ..+..-++|+|+++..... ++..+......+.+|++|..... .-.
T Consensus 97 ---------------i~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~i~sR~ 161 (340)
T 1sxj_C 97 ---------------IKDFASTRQIFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSQC 161 (340)
T ss_dssp ---------------HHHHHHBCCSSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTS
T ss_pred ---------------HHHHHhhcccCCCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchhHHhhc
Confidence 1111111 1245789999998765432 33333333456677777654321 112
Q ss_pred CeEecCCCChHHHHHHHHHhccCCCCCCCCCchHHHHHHHHhcCCchhHHH
Q 042541 312 SVHYLKPLTYEAARTLFLHSANLQDGNSYIPDENIVSKILRACKGCPLALK 362 (695)
Q Consensus 312 ~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~ 362 (695)
..+.+.+++.++..+.+...+..... .-..+..+.|++.++|.+.-+.
T Consensus 162 ~~~~~~~l~~~~~~~~l~~~~~~~~~---~i~~~~~~~i~~~s~G~~r~~~ 209 (340)
T 1sxj_C 162 TRFRFQPLPQEAIERRIANVLVHEKL---KLSPNAEKALIELSNGDMRRVL 209 (340)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHTTTC---CBCHHHHHHHHHHHTTCHHHHH
T ss_pred eeEeccCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHH
Confidence 36889999999998888876632221 1135678889999999887443
No 177
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=98.15 E-value=3.1e-05 Score=80.53 Aligned_cols=173 Identities=10% Similarity=0.094 Sum_probs=102.8
Q ss_pred CCCCCCcchHHHHHHHHHc------------CCceEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCCCCCHH
Q 042541 166 VISPGLDVPLKELKMELFK------------DGRQFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSKNPNVK 233 (695)
Q Consensus 166 ~~~vGr~~~~~~l~~~L~~------------~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~~~~~~ 233 (695)
+.++|.+..++.|.+.+.. ...+.|.|+|++|+|||+||+.+++. . ....+.++.+.-..
T Consensus 84 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~--~----~~~~~~i~~~~l~~-- 155 (357)
T 3d8b_A 84 EDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQ--S----GATFFSISASSLTS-- 155 (357)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHH--T----TCEEEEEEGGGGCC--
T ss_pred HHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHH--c----CCeEEEEehHHhhc--
Confidence 4579999999999887641 23578999999999999999999873 2 22244555543211
Q ss_pred HHHHHHHHhcCCCCCCCCChHHHHHHHHHHH-HhcCCCcEEEEEeCCCCCC---------------hHHHhhhccC----
Q 042541 234 AIVQKVLHHKGYPVPEFQTDEAAINDLERFF-KQMRIEAILLVLDDVWPGS---------------ESLLQKLGFQ---- 293 (695)
Q Consensus 234 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~-~~l~~~~~LlVlDdv~~~~---------------~~~~~~l~~~---- 293 (695)
. ........+..++ .....++.+|+||+++... ..++..+...
T Consensus 156 ------------~-----~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~ 218 (357)
T 3d8b_A 156 ------------K-----WVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSS 218 (357)
T ss_dssp ------------S-----STTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----C
T ss_pred ------------c-----ccchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccC
Confidence 0 0011122233333 2223567899999984220 0122222211
Q ss_pred CCCCEEEEEcCCCC-------CCCCCeEecCCCChHHHHHHHHHhccCCCCCCCCCchHHHHHHHHhcCC-chhHHHHHH
Q 042541 294 LPDYKILVTSRSEF-------PQFGSVHYLKPLTYEAARTLFLHSANLQDGNSYIPDENIVSKILRACKG-CPLALKVVG 365 (695)
Q Consensus 294 ~~gs~iivTtR~~~-------~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~G-~PLai~~~~ 365 (695)
..+..||.||.... ......+.+...+.++..+++...+..... .-..+....|++.+.| .+-.|..+.
T Consensus 219 ~~~v~vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~---~l~~~~l~~la~~t~G~s~~dl~~l~ 295 (357)
T 3d8b_A 219 EDRILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQC---CLSEEEIEQIVQQSDAFSGADMTQLC 295 (357)
T ss_dssp CCCEEEEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSCB---CCCHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred CCCEEEEEecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcCC---CccHHHHHHHHHHcCCCCHHHHHHHH
Confidence 12345555664431 123347788899999999988876643221 1135678889999998 455666654
Q ss_pred H
Q 042541 366 G 366 (695)
Q Consensus 366 ~ 366 (695)
.
T Consensus 296 ~ 296 (357)
T 3d8b_A 296 R 296 (357)
T ss_dssp H
T ss_pred H
Confidence 4
No 178
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.14 E-value=8.1e-07 Score=99.60 Aligned_cols=83 Identities=11% Similarity=0.109 Sum_probs=37.2
Q ss_pred CCceEEEEEEccCcccc----CChhhcCCCCCcEEEEcccCCCCcccCcc-cccccCCCCcEEEeccCCCCCcc-ccccc
Q 042541 549 GPEVKVVVLNIRTKKYV----LPDFLQKMDELKVLIVTNYGFSPAELNNF-RVLSALSKLKKIRLEHVSLPNSL-ATVRM 622 (695)
Q Consensus 549 ~~~l~~L~l~~~~~~~~----~p~~~~~l~~Lr~L~l~~~~~~~~~~~~~-~~l~~l~~L~~L~L~~~~l~~lp-~i~~l 622 (695)
+++|+.|.++.+..... ++..+..+++|++|++++|.+.......+ ..+..+++|+.|++++|.+..+| .++++
T Consensus 163 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~ 242 (592)
T 3ogk_B 163 CRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAA 242 (592)
T ss_dssp CTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHC
T ss_pred CCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhhh
Confidence 45555555554422111 23334445555555555544421000011 11334555555555555555555 55555
Q ss_pred ccccEEeec
Q 042541 623 NHLQKVSLV 631 (695)
Q Consensus 623 ~~L~~L~l~ 631 (695)
++|++|+++
T Consensus 243 ~~L~~L~l~ 251 (592)
T 3ogk_B 243 ANLEEFCGG 251 (592)
T ss_dssp TTCCEEEEC
T ss_pred hHHHhhccc
Confidence 555555554
No 179
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=98.14 E-value=4.7e-05 Score=77.81 Aligned_cols=174 Identities=14% Similarity=0.164 Sum_probs=100.8
Q ss_pred CCCCCCcchHHHHHHHHHc------------CCceEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCCCCCHH
Q 042541 166 VISPGLDVPLKELKMELFK------------DGRQFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSKNPNVK 233 (695)
Q Consensus 166 ~~~vGr~~~~~~l~~~L~~------------~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~~~~~~ 233 (695)
+.++|.+..++.|.+.+.. ...+-|.|+|++|+|||+||+.+++. .. ....+.++.+.-.+
T Consensus 12 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~--~~---~~~~~~i~~~~l~~-- 84 (322)
T 1xwi_A 12 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATE--AN---NSTFFSISSSDLVS-- 84 (322)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHH--TT---SCEEEEEECCSSCC--
T ss_pred HHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHH--cC---CCcEEEEEhHHHHh--
Confidence 4578999988888877641 12467999999999999999999973 21 11133444432210
Q ss_pred HHHHHHHHhcCCCCCCCCChHHHHHHHHHHH-HhcCCCcEEEEEeCCCCCC--------h---H----HHhhhcc---CC
Q 042541 234 AIVQKVLHHKGYPVPEFQTDEAAINDLERFF-KQMRIEAILLVLDDVWPGS--------E---S----LLQKLGF---QL 294 (695)
Q Consensus 234 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~-~~l~~~~~LlVlDdv~~~~--------~---~----~~~~l~~---~~ 294 (695)
... ...+. .+..++ .....++.+|++|+++... . . ++..+.. ..
T Consensus 85 ------------~~~--g~~~~---~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~ 147 (322)
T 1xwi_A 85 ------------KWL--GESEK---LVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDN 147 (322)
T ss_dssp ------------SSC--CSCHH---HHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCC
T ss_pred ------------hhh--hHHHH---HHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccC
Confidence 000 01122 223333 2223678999999996431 0 1 1222221 12
Q ss_pred CCCEEEEEcCCCC-------CCCCCeEecCCCChHHHHHHHHHhccCCCCCCCCCchHHHHHHHHhcCCc-hhHHHHHHH
Q 042541 295 PDYKILVTSRSEF-------PQFGSVHYLKPLTYEAARTLFLHSANLQDGNSYIPDENIVSKILRACKGC-PLALKVVGG 366 (695)
Q Consensus 295 ~gs~iivTtR~~~-------~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~G~-PLai~~~~~ 366 (695)
.+..||.||.... ......+.++..+.++-.+++......... .........|++.+.|. +-.|..+..
T Consensus 148 ~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~---~l~~~~l~~la~~t~G~sgadl~~l~~ 224 (322)
T 1xwi_A 148 DGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQN---SLTEADFRELGRKTDGYSGADISIIVR 224 (322)
T ss_dssp TTEEEEEEESCTTTSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTCCB---CCCHHHHHHHHHTCTTCCHHHHHHHHH
T ss_pred CCEEEEEecCCcccCCHHHHhhcCeEEEeCCcCHHHHHHHHHHHHhcCCC---CCCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 3445555664431 123347788888999999999887643221 11355678899999887 444555443
No 180
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.13 E-value=1.9e-07 Score=97.94 Aligned_cols=136 Identities=13% Similarity=0.070 Sum_probs=90.3
Q ss_pred CceEEEEEEccCcccc----CChhhc-CCCCCcEEEEcccCCCCcccCcccccccCCCCcEEEeccCCCCCcc--cc---
Q 042541 550 PEVKVVVLNIRTKKYV----LPDFLQ-KMDELKVLIVTNYGFSPAELNNFRVLSALSKLKKIRLEHVSLPNSL--AT--- 619 (695)
Q Consensus 550 ~~l~~L~l~~~~~~~~----~p~~~~-~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~lp--~i--- 619 (695)
++++.|.++.+..... +...+. ..++|+.|+|++|.+....+..+ ...+.+|++|+|++|.++... .+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l--~~~L~~L~~L~Ls~n~l~~~~~~~L~~~ 149 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTL--LPVFLRARKLGLQLNSLGPEACKDLRDL 149 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHT--HHHHHTEEEEECCSSCCCHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHH--HHHHHhccHhhcCCCCCCHHHHHHHHHH
Confidence 3455666655543322 223333 23799999999998754332222 345678999999999997433 33
Q ss_pred --cccccccEEeeccccCCcccccchhhhcccCCCccEEecccccccc-----cCchhhcCCCCCceeecccccCCC
Q 042541 620 --VRMNHLQKVSLVMCNVGQVFRNSTFRISDAFPNLLEMDIDYCNDLI-----ELPDGLCDIVSMEKLRITNCHRLS 689 (695)
Q Consensus 620 --~~l~~L~~L~l~~~~i~~~~~~~~~~l~~~l~~L~~L~l~~c~~l~-----~lP~~i~~L~~L~~L~l~~~~~l~ 689 (695)
...++|++|+|++|.++......+...-..+++|++|+|++|. ++ .++..+...++|++|+|++|. ++
T Consensus 150 L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~-l~~~g~~~L~~~L~~~~~L~~L~Ls~N~-i~ 224 (372)
T 3un9_A 150 LLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTG-LGDEGLELLAAQLDRNRQLQELNVAYNG-AG 224 (372)
T ss_dssp HHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSS-CHHHHHHHHHHHGGGCSCCCEEECCSSC-CC
T ss_pred HHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCC-CCcHHHHHHHHHHhcCCCcCeEECCCCC-CC
Confidence 2457899999999988653221111000168899999999975 44 346678888999999999986 44
No 181
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.12 E-value=1.3e-06 Score=90.70 Aligned_cols=133 Identities=17% Similarity=0.158 Sum_probs=65.7
Q ss_pred CCCceEEEEEEccCccccCChhhcCCCCCcEEEEcccCCCCcccCcccccccCCCCcEEEeccC--C------CCCcc--
Q 042541 548 QGPEVKVVVLNIRTKKYVLPDFLQKMDELKVLIVTNYGFSPAELNNFRVLSALSKLKKIRLEHV--S------LPNSL-- 617 (695)
Q Consensus 548 ~~~~l~~L~l~~~~~~~~~p~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~--~------l~~lp-- 617 (695)
.+|+|+.|.+.++.. ..+|. +. +++|+.|++..+++....+..+. ...+++|++|+|+.+ . +..+.
T Consensus 170 ~~P~L~~L~L~g~~~-l~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~-~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~ 245 (362)
T 2ra8_A 170 AMPLLNNLKIKGTNN-LSIGK-KP-RPNLKSLEIISGGLPDSVVEDIL-GSDLPNLEKLVLYVGVEDYGFDGDMNVFRPL 245 (362)
T ss_dssp TCTTCCEEEEECCBT-CBCCS-CB-CTTCSEEEEECSBCCHHHHHHHH-HSBCTTCCEEEEECBCGGGTCCSCGGGTGGG
T ss_pred cCCCCcEEEEeCCCC-ceecc-cc-CCCCcEEEEecCCCChHHHHHHH-HccCCCCcEEEEeccccccccchhHHHHHHH
Confidence 346666666665521 12333 22 66677777766554221111110 125667777766421 1 11111
Q ss_pred -cccccccccEEeeccccCCcccccchhhhcccCCCccEEeccccccccc-----CchhhcCCCCCceeeccccc
Q 042541 618 -ATVRMNHLQKVSLVMCNVGQVFRNSTFRISDAFPNLLEMDIDYCNDLIE-----LPDGLCDIVSMEKLRITNCH 686 (695)
Q Consensus 618 -~i~~l~~L~~L~l~~~~i~~~~~~~~~~l~~~l~~L~~L~l~~c~~l~~-----lP~~i~~L~~L~~L~l~~~~ 686 (695)
..+.+++|++|+|++|.+...........| .+++|++|+|++|. ++. ++.++.++++|+.|+|++|.
T Consensus 246 l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~-~~~~L~~LdLs~n~-L~d~G~~~L~~~L~~l~~L~~L~L~~n~ 318 (362)
T 2ra8_A 246 FSKDRFPNLKWLGIVDAEEQNVVVEMFLESD-ILPQLETMDISAGV-LTDEGARLLLDHVDKIKHLKFINMKYNY 318 (362)
T ss_dssp SCTTTCTTCCEEEEESCTTHHHHHHHHHHCS-SGGGCSEEECCSSC-CBHHHHHHHHTTHHHHTTCSEEECCSBB
T ss_pred HhcCCCCCcCEEeCCCCCCchHHHHHHHhCc-cCCCCCEEECCCCC-CChHHHHHHHhhcccCCcceEEECCCCc
Confidence 112466777777777665532111111112 46677777776643 332 44555666777777777654
No 182
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=98.10 E-value=1.7e-05 Score=81.32 Aligned_cols=173 Identities=16% Similarity=0.181 Sum_probs=102.3
Q ss_pred CCCCCCcchHHHHHHHHH------------cCCceEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCCCCCHH
Q 042541 166 VISPGLDVPLKELKMELF------------KDGRQFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSKNPNVK 233 (695)
Q Consensus 166 ~~~vGr~~~~~~l~~~L~------------~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~~~~~~ 233 (695)
+.++|.+..++.|.+.+. ....+-|.|+|++|+|||+||+.+++ ... ...+.++.+.
T Consensus 18 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~--~~~----~~~~~v~~~~----- 86 (322)
T 3eie_A 18 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVAT--EAN----STFFSVSSSD----- 86 (322)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHH--HHT----CEEEEEEHHH-----
T ss_pred HHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHH--HHC----CCEEEEchHH-----
Confidence 457999999999988773 11246799999999999999999987 332 2233443321
Q ss_pred HHHHHHHHhcCCCCCCCCChHHHHHHHHHHH-HhcCCCcEEEEEeCCCCCC---------------hHHHhhhc---cCC
Q 042541 234 AIVQKVLHHKGYPVPEFQTDEAAINDLERFF-KQMRIEAILLVLDDVWPGS---------------ESLLQKLG---FQL 294 (695)
Q Consensus 234 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~-~~l~~~~~LlVlDdv~~~~---------------~~~~~~l~---~~~ 294 (695)
+ .... .......+..++ .....++.+|+||+++... ..++..+. ...
T Consensus 87 -l----~~~~---------~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~ 152 (322)
T 3eie_A 87 -L----VSKW---------MGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDS 152 (322)
T ss_dssp -H----HTTT---------GGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSC
T ss_pred -H----hhcc---------cchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccC
Confidence 1 1110 011122233333 2224567899999986431 11222222 223
Q ss_pred CCCEEEEEcCCCCC-------CCCCeEecCCCChHHHHHHHHHhccCCCCCCCCCchHHHHHHHHhcCCc-hhHHHHHHH
Q 042541 295 PDYKILVTSRSEFP-------QFGSVHYLKPLTYEAARTLFLHSANLQDGNSYIPDENIVSKILRACKGC-PLALKVVGG 366 (695)
Q Consensus 295 ~gs~iivTtR~~~~-------~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~G~-PLai~~~~~ 366 (695)
.+..||.||..... .....+.++..+.++-.+++...+..... .........|++.+.|. +-.|..+..
T Consensus 153 ~~v~vi~atn~~~~ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~---~~~~~~l~~la~~t~g~sg~di~~l~~ 229 (322)
T 3eie_A 153 QGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPC---VLTKEDYRTLGAMTEGYSGSDIAVVVK 229 (322)
T ss_dssp CCEEEEEEESCGGGSCHHHHHHCCEEEECCCCCHHHHHHHHHHHHTTCCC---CCCHHHHHHHHHTTTTCCHHHHHHHHH
T ss_pred CceEEEEecCChhhCCHHHHcccCeEEEeCCCCHHHHHHHHHHHhccCCC---CCCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 34556656654311 23347788889999999999987754322 11355678899999884 545554443
No 183
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.10 E-value=1e-05 Score=75.34 Aligned_cols=44 Identities=20% Similarity=0.209 Sum_probs=39.7
Q ss_pred CCCCCCcchHHHHHHHHHcCCceEEEEEcCCCCcHHHHHHHHhc
Q 042541 166 VISPGLDVPLKELKMELFKDGRQFIVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 166 ~~~vGr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~~~~ 209 (695)
..++||+.+++.+.+.+.....+.+.|+|++|+|||+||+.+++
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~~~~~vll~G~~G~GKT~la~~~~~ 65 (187)
T 2p65_A 22 DPVIGRDTEIRRAIQILSRRTKNNPILLGDPGVGKTAIVEGLAI 65 (187)
T ss_dssp CCCCSCHHHHHHHHHHHTSSSSCEEEEESCGGGCHHHHHHHHHH
T ss_pred chhhcchHHHHHHHHHHhCCCCCceEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999876677889999999999999999987
No 184
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=98.07 E-value=3.4e-05 Score=78.15 Aligned_cols=166 Identities=13% Similarity=0.152 Sum_probs=95.4
Q ss_pred CCCCCCcchHHHHHHHHHc-------------CCceEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCCCCCH
Q 042541 166 VISPGLDVPLKELKMELFK-------------DGRQFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSKNPNV 232 (695)
Q Consensus 166 ~~~vGr~~~~~~l~~~L~~-------------~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~~~~~ 232 (695)
+.++|.+..+++|.+.+.. ...+.|.|+|++|+|||+||+.+++ ... ...+.++ .
T Consensus 15 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~--~~~----~~~i~v~------~ 82 (301)
T 3cf0_A 15 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIAN--ECQ----ANFISIK------G 82 (301)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHH--HTT----CEEEEEC------H
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHH--HhC----CCEEEEE------h
Confidence 4579999988888877652 3356799999999999999999997 332 2222332 2
Q ss_pred HHHHHHHHHhcCCCCCCCCChHHHHHHHHHHH-HhcCCCcEEEEEeCCCCCC------------------hHHHhhhccC
Q 042541 233 KAIVQKVLHHKGYPVPEFQTDEAAINDLERFF-KQMRIEAILLVLDDVWPGS------------------ESLLQKLGFQ 293 (695)
Q Consensus 233 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~-~~l~~~~~LlVlDdv~~~~------------------~~~~~~l~~~ 293 (695)
.++..... +.. . ..+..++ ......+.++++|+++... ..++..+...
T Consensus 83 ~~l~~~~~---g~~------~----~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~ 149 (301)
T 3cf0_A 83 PELLTMWF---GES------E----ANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGM 149 (301)
T ss_dssp HHHHHHHH---TTC------T----THHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSS
T ss_pred HHHHhhhc---Cch------H----HHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcc
Confidence 23333221 211 0 1123333 2223568999999986311 1123333211
Q ss_pred --CCCCEEEEEcCCCC------C---CCCCeEecCCCChHHHHHHHHHhccCCCCCCCCCchHHHHHHHHhcCCchhH
Q 042541 294 --LPDYKILVTSRSEF------P---QFGSVHYLKPLTYEAARTLFLHSANLQDGNSYIPDENIVSKILRACKGCPLA 360 (695)
Q Consensus 294 --~~gs~iivTtR~~~------~---~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLa 360 (695)
..+..||.||.... . .....+.++..+.++-.+++............. ....+++.+.|.|-+
T Consensus 150 ~~~~~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~~~~----~~~~la~~~~g~sg~ 223 (301)
T 3cf0_A 150 STKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDV----DLEFLAKMTNGFSGA 223 (301)
T ss_dssp CTTSSEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCSSC----CHHHHHHTCSSCCHH
T ss_pred cCCCCEEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCCccc----hHHHHHHHcCCCCHH
Confidence 22456666665441 1 223378899999999889888766433211111 134566677776643
No 185
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=98.05 E-value=4e-05 Score=78.58 Aligned_cols=165 Identities=17% Similarity=0.124 Sum_probs=94.5
Q ss_pred CCCcc--hHHHHHHHHHcC--CceEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCCCCCHHHHHHHHHHhcC
Q 042541 169 PGLDV--PLKELKMELFKD--GRQFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSKNPNVKAIVQKVLHHKG 244 (695)
Q Consensus 169 vGr~~--~~~~l~~~L~~~--~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~~~~~~~~~~~i~~~l~ 244 (695)
+|... ....+...+..+ ....+.|+|++|+||||||+.+++. .... ...+++++.. ++...+...+.
T Consensus 15 ~g~~~~~a~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~--~~~~-~~~~~~i~~~------~~~~~~~~~~~ 85 (324)
T 1l8q_A 15 VGEGNRLAYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNE--AKKR-GYRVIYSSAD------DFAQAMVEHLK 85 (324)
T ss_dssp CCTTTHHHHHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHH--HHHT-TCCEEEEEHH------HHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHH--HHHC-CCEEEEEEHH------HHHHHHHHHHH
Confidence 36443 234444544443 2467899999999999999999883 3222 2235566543 23333333321
Q ss_pred CCCCCCCChHHHHHHHHHHHHhcCCCcEEEEEeCCCCCCh--H----HHhhhcc-CCCCCEEEEEcCCCCC---C-----
Q 042541 245 YPVPEFQTDEAAINDLERFFKQMRIEAILLVLDDVWPGSE--S----LLQKLGF-QLPDYKILVTSRSEFP---Q----- 309 (695)
Q Consensus 245 ~~~~~~~~~~~~~~~l~~~~~~l~~~~~LlVlDdv~~~~~--~----~~~~l~~-~~~gs~iivTtR~~~~---~----- 309 (695)
.. . ...+ ...+ .+..+|++||+..... + +...+.. ...|..||+||..... .
T Consensus 86 ~~-----~----~~~~---~~~~-~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~~~L 152 (324)
T 1l8q_A 86 KG-----T----INEF---RNMY-KSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRL 152 (324)
T ss_dssp HT-----C----HHHH---HHHH-HTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHH
T ss_pred cC-----c----HHHH---HHHh-cCCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhhhHh
Confidence 10 0 1111 1112 2367999999865431 1 2222211 1246678888865421 1
Q ss_pred -----CCCeEecCCCChHHHHHHHHHhccCCCCCCCCCchHHHHHHHHhcCCchhH
Q 042541 310 -----FGSVHYLKPLTYEAARTLFLHSANLQDGNSYIPDENIVSKILRACKGCPLA 360 (695)
Q Consensus 310 -----~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLa 360 (695)
.+..+.+++ +.++..+++...+..... .-.++....|++.+ |..-.
T Consensus 153 ~sR~~~~~~i~l~~-~~~e~~~il~~~~~~~~~---~l~~~~l~~l~~~~-g~~r~ 203 (324)
T 1l8q_A 153 VSRFEGGILVEIEL-DNKTRFKIIKEKLKEFNL---ELRKEVIDYLLENT-KNVRE 203 (324)
T ss_dssp HHHHHTSEEEECCC-CHHHHHHHHHHHHHHTTC---CCCHHHHHHHHHHC-SSHHH
T ss_pred hhcccCceEEEeCC-CHHHHHHHHHHHHHhcCC---CCCHHHHHHHHHhC-CCHHH
Confidence 123688999 999999999887643222 12366788889988 77653
No 186
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=98.03 E-value=2.8e-05 Score=80.75 Aligned_cols=172 Identities=16% Similarity=0.181 Sum_probs=99.3
Q ss_pred CCCCCCcchHHHHHHHHHc------------CCceEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCCCCCHH
Q 042541 166 VISPGLDVPLKELKMELFK------------DGRQFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSKNPNVK 233 (695)
Q Consensus 166 ~~~vGr~~~~~~l~~~L~~------------~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~~~~~~ 233 (695)
+.++|.+..++.|.+.+.. ...+-|.|+|++|+|||+||+.+++. .. ...+.++.+
T Consensus 51 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~--~~----~~~~~v~~~------ 118 (355)
T 2qp9_X 51 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATE--AN----STFFSVSSS------ 118 (355)
T ss_dssp GGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHH--HT----CEEEEEEHH------
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHH--hC----CCEEEeeHH------
Confidence 4579999999999887631 11345889999999999999999983 32 223344332
Q ss_pred HHHHHHHHhcCCCCCCCCChHHHHHHHHHHH-HhcCCCcEEEEEeCCCCCCh---------------HHHhhhc---cCC
Q 042541 234 AIVQKVLHHKGYPVPEFQTDEAAINDLERFF-KQMRIEAILLVLDDVWPGSE---------------SLLQKLG---FQL 294 (695)
Q Consensus 234 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~-~~l~~~~~LlVlDdv~~~~~---------------~~~~~l~---~~~ 294 (695)
++ .....+ ... ..+..++ .....++.+|+||+++.... .++..+. ...
T Consensus 119 ~l----~~~~~g------~~~---~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~ 185 (355)
T 2qp9_X 119 DL----VSKWMG------ESE---KLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDS 185 (355)
T ss_dssp HH----HSCC---------CH---HHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---
T ss_pred HH----hhhhcc------hHH---HHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccC
Confidence 11 111100 111 2223333 22235789999999864321 1222221 112
Q ss_pred CCCEEEEEcCCCC-------CCCCCeEecCCCChHHHHHHHHHhccCCCCCCCCCchHHHHHHHHhcCCc-hhHHHHHH
Q 042541 295 PDYKILVTSRSEF-------PQFGSVHYLKPLTYEAARTLFLHSANLQDGNSYIPDENIVSKILRACKGC-PLALKVVG 365 (695)
Q Consensus 295 ~gs~iivTtR~~~-------~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~G~-PLai~~~~ 365 (695)
.+..||.||.... ......+.++..+.++-.+++...+..... .........|++.+.|. +-.|..+.
T Consensus 186 ~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~---~~~~~~l~~la~~t~G~sg~dl~~l~ 261 (355)
T 2qp9_X 186 QGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPS---VLTKEDYRTLGAMTEGYSGSDIAVVV 261 (355)
T ss_dssp CCEEEEEEESCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTSCB---CCCHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred CCeEEEeecCCcccCCHHHHcccCEEEEeCCcCHHHHHHHHHHHHhhCCC---CCCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 3445555665431 123347788999999999999887643321 11245678899999884 54455443
No 187
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.02 E-value=0.00013 Score=75.60 Aligned_cols=164 Identities=16% Similarity=0.186 Sum_probs=97.5
Q ss_pred CCCCCCcchHHHHHHHHH----c---------CCceEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCCCCCH
Q 042541 166 VISPGLDVPLKELKMELF----K---------DGRQFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSKNPNV 232 (695)
Q Consensus 166 ~~~vGr~~~~~~l~~~L~----~---------~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~~~~~ 232 (695)
+.+.|.++.+++|.+.+. . ..++=|.++|++|+|||.||+++++ ..... .+.++.+.-.+
T Consensus 148 ~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~--e~~~~----f~~v~~s~l~s- 220 (405)
T 4b4t_J 148 DMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAH--HTDCK----FIRVSGAELVQ- 220 (405)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHH--HHTCE----EEEEEGGGGSC-
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHH--hhCCC----ceEEEhHHhhc-
Confidence 456889988888877654 1 1256789999999999999999998 33222 34554443211
Q ss_pred HHHHHHHHHhcCCCCCCCCChHHHHHHHHHHH-HhcCCCcEEEEEeCCCCCCh-----------H-------HHhhhcc-
Q 042541 233 KAIVQKVLHHKGYPVPEFQTDEAAINDLERFF-KQMRIEAILLVLDDVWPGSE-----------S-------LLQKLGF- 292 (695)
Q Consensus 233 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~-~~l~~~~~LlVlDdv~~~~~-----------~-------~~~~l~~- 292 (695)
. -..+....++.++ ..-...+++|++|+++.... . ++..+..
T Consensus 221 -------------k-----~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~ 282 (405)
T 4b4t_J 221 -------------K-----YIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGF 282 (405)
T ss_dssp -------------S-----STTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTT
T ss_pred -------------c-----ccchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhcc
Confidence 0 1122234445555 33346789999999864320 0 2222221
Q ss_pred -CCCCCEEEEEcCCCC---------CCCCCeEecCCCChHHHHHHHHHhccCCCCCCCCCchHHHHHHHHhcCCch
Q 042541 293 -QLPDYKILVTSRSEF---------PQFGSVHYLKPLTYEAARTLFLHSANLQDGNSYIPDENIVSKILRACKGCP 358 (695)
Q Consensus 293 -~~~gs~iivTtR~~~---------~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~G~P 358 (695)
...+..||.||.... ......+.++.-+.++-.++|+.+.......... -...|++.+.|+-
T Consensus 283 ~~~~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dv----dl~~lA~~t~G~S 354 (405)
T 4b4t_J 283 ETSKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGI----NLRKVAEKMNGCS 354 (405)
T ss_dssp TCCCCEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSC----CHHHHHHHCCSCC
T ss_pred CCCCCeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCccC----CHHHHHHHCCCCC
Confidence 122345555665441 1344588899889999899998766433221111 1567888888753
No 188
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=98.02 E-value=1.9e-05 Score=70.50 Aligned_cols=109 Identities=13% Similarity=0.071 Sum_probs=66.0
Q ss_pred CCCCCcchHHHHHHHHH--cCCceEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCCCCCHHHHHHHHHHhcC
Q 042541 167 ISPGLDVPLKELKMELF--KDGRQFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSKNPNVKAIVQKVLHHKG 244 (695)
Q Consensus 167 ~~vGr~~~~~~l~~~L~--~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~~~~~~~~~~~i~~~l~ 244 (695)
.++|++..++++.+.+. .....-|.|+|.+|+|||++|+.+++.. .+...+ .+ ++++...+.
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~-~~~~~~--~v-~~~~~~~~~------------ 65 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFG-RNAQGE--FV-YRELTPDNA------------ 65 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSS-TTTTSC--CE-EEECCTTTS------------
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhC-CccCCC--EE-EECCCCCcc------------
Confidence 47999999999998876 2334557899999999999999998731 111222 33 666543221
Q ss_pred CCCCCCCChHHHHHHHHHHHHhcCCCcEEEEEeCCCCCChH----HHhhhccCCCCCEEEEEcCCC
Q 042541 245 YPVPEFQTDEAAINDLERFFKQMRIEAILLVLDDVWPGSES----LLQKLGFQLPDYKILVTSRSE 306 (695)
Q Consensus 245 ~~~~~~~~~~~~~~~l~~~~~~l~~~~~LlVlDdv~~~~~~----~~~~l~~~~~gs~iivTtR~~ 306 (695)
.. ....++.. +...|++|+++..... ++..+.......++|+||...
T Consensus 66 ------~~-------~~~~~~~a--~~g~l~ldei~~l~~~~q~~Ll~~l~~~~~~~~~I~~t~~~ 116 (145)
T 3n70_A 66 ------PQ-------LNDFIALA--QGGTLVLSHPEHLTREQQYHLVQLQSQEHRPFRLIGIGDTS 116 (145)
T ss_dssp ------SC-------HHHHHHHH--TTSCEEEECGGGSCHHHHHHHHHHHHSSSCSSCEEEEESSC
T ss_pred ------hh-------hhcHHHHc--CCcEEEEcChHHCCHHHHHHHHHHHhhcCCCEEEEEECCcC
Confidence 00 11112111 2357899999877643 333343334457888888643
No 189
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=98.01 E-value=6.6e-05 Score=79.08 Aligned_cols=174 Identities=14% Similarity=0.156 Sum_probs=100.3
Q ss_pred CCCCCCCcchHHHHHHHHH------------cCCceEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCCCCCH
Q 042541 165 PVISPGLDVPLKELKMELF------------KDGRQFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSKNPNV 232 (695)
Q Consensus 165 ~~~~vGr~~~~~~l~~~L~------------~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~~~~~ 232 (695)
-+.++|.+..++.|.+++. ....+-|.|+|++|+|||+||+.+++. . ...++.++.+.-...
T Consensus 114 ~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~--~----~~~~~~v~~~~l~~~ 187 (389)
T 3vfd_A 114 FDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAE--S----NATFFNISAASLTSK 187 (389)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHH--T----TCEEEEECSCCC---
T ss_pred hHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHh--h----cCcEEEeeHHHhhcc
Confidence 3568999999999988773 122468999999999999999999873 2 222344444332210
Q ss_pred HHHHHHHHHhcCCCCCCCCChHHHHHHHHHHHH-hcCCCcEEEEEeCCCCCC-----------hH----HHhhhc---cC
Q 042541 233 KAIVQKVLHHKGYPVPEFQTDEAAINDLERFFK-QMRIEAILLVLDDVWPGS-----------ES----LLQKLG---FQ 293 (695)
Q Consensus 233 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~-~l~~~~~LlVlDdv~~~~-----------~~----~~~~l~---~~ 293 (695)
. .+ ... ..+..++. .....+.+|+||+++... .. ++..+. ..
T Consensus 188 --~-------~g-------~~~---~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~ 248 (389)
T 3vfd_A 188 --Y-------VG-------EGE---KLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSA 248 (389)
T ss_dssp --------------------CH---HHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC--
T ss_pred --c-------cc-------hHH---HHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhccccc
Confidence 0 00 011 12223331 113456899999995431 11 111111 11
Q ss_pred -CCCCEEEEEcCCCC-------CCCCCeEecCCCChHHHHHHHHHhccCCCCCCCCCchHHHHHHHHhcCCchh-HHHHH
Q 042541 294 -LPDYKILVTSRSEF-------PQFGSVHYLKPLTYEAARTLFLHSANLQDGNSYIPDENIVSKILRACKGCPL-ALKVV 364 (695)
Q Consensus 294 -~~gs~iivTtR~~~-------~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PL-ai~~~ 364 (695)
..+..||.||.... ......+.+...+.++..+++...+..... .-..+....|++.+.|..- +|..+
T Consensus 249 ~~~~v~vI~atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~---~l~~~~~~~la~~~~g~~~~~l~~L 325 (389)
T 3vfd_A 249 GDDRVLVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGS---PLTQKELAQLARMTDGYSGSDLTAL 325 (389)
T ss_dssp ---CEEEEEEESCGGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCC---CSCHHHHHHHHHHTTTCCHHHHHHH
T ss_pred CCCCEEEEEecCCchhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcCC---CCCHHHHHHHHHHcCCCCHHHHHHH
Confidence 12344555665431 123346889999999999999877644322 1235677889999988644 55555
Q ss_pred HH
Q 042541 365 GG 366 (695)
Q Consensus 365 ~~ 366 (695)
..
T Consensus 326 ~~ 327 (389)
T 3vfd_A 326 AK 327 (389)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 190
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=98.01 E-value=0.00013 Score=73.79 Aligned_cols=172 Identities=13% Similarity=0.169 Sum_probs=99.2
Q ss_pred CCCCCCcchHHHHHHHHHc------------CCceEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCCCCCHH
Q 042541 166 VISPGLDVPLKELKMELFK------------DGRQFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSKNPNVK 233 (695)
Q Consensus 166 ~~~vGr~~~~~~l~~~L~~------------~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~~~~~~ 233 (695)
+.++|.+..++.+.+.+.. ...+.+.|+|++|+||||+|+.+++. . ....+.++.+....
T Consensus 21 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~--~----~~~~~~i~~~~l~~-- 92 (297)
T 3b9p_A 21 TDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATE--C----SATFLNISAASLTS-- 92 (297)
T ss_dssp GGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHH--T----TCEEEEEESTTTSS--
T ss_pred HHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHH--h----CCCeEEeeHHHHhh--
Confidence 4679999999998887642 23568899999999999999999873 2 22233444433211
Q ss_pred HHHHHHHHhcCCCCCCCCChHHHHHHHHHHH-HhcCCCcEEEEEeCCCCCC-----------hH----HHhhhcc---CC
Q 042541 234 AIVQKVLHHKGYPVPEFQTDEAAINDLERFF-KQMRIEAILLVLDDVWPGS-----------ES----LLQKLGF---QL 294 (695)
Q Consensus 234 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~-~~l~~~~~LlVlDdv~~~~-----------~~----~~~~l~~---~~ 294 (695)
... ..... .+...+ .....++.+|++|++.... .. ++..+.. ..
T Consensus 93 ------------~~~--~~~~~---~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~ 155 (297)
T 3b9p_A 93 ------------KYV--GDGEK---LVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNP 155 (297)
T ss_dssp ------------SSC--SCHHH---HHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC---
T ss_pred ------------ccc--chHHH---HHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccC
Confidence 000 01111 222222 2223567899999985431 11 1221111 11
Q ss_pred --CCCEEEEEcCCCC-------CCCCCeEecCCCChHHHHHHHHHhccCCCCCCCCCchHHHHHHHHhcCCchh-HHHHH
Q 042541 295 --PDYKILVTSRSEF-------PQFGSVHYLKPLTYEAARTLFLHSANLQDGNSYIPDENIVSKILRACKGCPL-ALKVV 364 (695)
Q Consensus 295 --~gs~iivTtR~~~-------~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PL-ai~~~ 364 (695)
.+..||.||.... ......+.++..+.++...++...+..... .-..+....|++.+.|.+- ++..+
T Consensus 156 ~~~~v~vi~~tn~~~~l~~~l~~R~~~~i~~~~p~~~~r~~il~~~~~~~~~---~~~~~~~~~la~~~~g~~~~~l~~l 232 (297)
T 3b9p_A 156 DGDRIVVLAATNRPQELDEAALRRFTKRVYVSLPDEQTRELLLNRLLQKQGS---PLDTEALRRLAKITDGYSGSDLTAL 232 (297)
T ss_dssp ---CEEEEEEESCGGGBCHHHHHHCCEEEECCCCCHHHHHHHHHHHHGGGSC---CSCHHHHHHHHHHTTTCCHHHHHHH
T ss_pred CCCcEEEEeecCChhhCCHHHHhhCCeEEEeCCcCHHHHHHHHHHHHHhcCC---CCCHHHHHHHHHHcCCCCHHHHHHH
Confidence 2345555665431 122346778888888888888776543221 1135567889999999875 55444
Q ss_pred H
Q 042541 365 G 365 (695)
Q Consensus 365 ~ 365 (695)
.
T Consensus 233 ~ 233 (297)
T 3b9p_A 233 A 233 (297)
T ss_dssp H
T ss_pred H
Confidence 3
No 191
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.98 E-value=3.7e-06 Score=76.81 Aligned_cols=86 Identities=14% Similarity=0.227 Sum_probs=58.5
Q ss_pred CCCcEEEEcccCCCCcccCcccccccCCCCcEEEeccCC-CCCcc--ccccc----ccccEEeecccc-CCcccccchhh
Q 042541 574 DELKVLIVTNYGFSPAELNNFRVLSALSKLKKIRLEHVS-LPNSL--ATVRM----NHLQKVSLVMCN-VGQVFRNSTFR 645 (695)
Q Consensus 574 ~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~-l~~lp--~i~~l----~~L~~L~l~~~~-i~~~~~~~~~~ 645 (695)
.+|+.||+++|.+....+. .+..+++|+.|+|++|. ++.-. .+..+ ++|++|+|++|. |+..- ...
T Consensus 61 ~~L~~LDLs~~~Itd~GL~---~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~G---l~~ 134 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFD---HMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKG---IIA 134 (176)
T ss_dssp CCEEEEEEESCCCCGGGGG---GGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHH---HHH
T ss_pred ceEeEEeCcCCCccHHHHH---HhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHH---HHH
Confidence 4699999999876554443 36788889999998885 66332 45554 368888888884 65421 112
Q ss_pred hcccCCCccEEeccccccccc
Q 042541 646 ISDAFPNLLEMDIDYCNDLIE 666 (695)
Q Consensus 646 l~~~l~~L~~L~l~~c~~l~~ 666 (695)
+. .+++|+.|++++|..++.
T Consensus 135 L~-~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 135 LH-HFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp GG-GCTTCCEEEEESCTTCCC
T ss_pred Hh-cCCCCCEEECCCCCCCCc
Confidence 22 678888888888876654
No 192
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=97.94 E-value=0.00022 Score=76.31 Aligned_cols=173 Identities=14% Similarity=0.193 Sum_probs=98.4
Q ss_pred CCCCCCcchHHHHHHHHH------------cCCceEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCCCCCHH
Q 042541 166 VISPGLDVPLKELKMELF------------KDGRQFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSKNPNVK 233 (695)
Q Consensus 166 ~~~vGr~~~~~~l~~~L~------------~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~~~~~~ 233 (695)
+.++|.+..++.|.+.+. ....+-|.|+|++|+|||+||+.+++. .. .. -++.++...
T Consensus 134 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~--~~---~~--~~~~v~~~~--- 203 (444)
T 2zan_A 134 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATE--AN---NS--TFFSISSSD--- 203 (444)
T ss_dssp GGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHH--CC---SS--EEEEECCC----
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHH--cC---CC--CEEEEeHHH---
Confidence 467999999998888763 123467999999999999999999973 21 11 233443321
Q ss_pred HHHHHHHHhcCCCCCCCCChHHHHHHHHHHH-HhcCCCcEEEEEeCCCCCC-----------hHHHhhhcc-------CC
Q 042541 234 AIVQKVLHHKGYPVPEFQTDEAAINDLERFF-KQMRIEAILLVLDDVWPGS-----------ESLLQKLGF-------QL 294 (695)
Q Consensus 234 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~-~~l~~~~~LlVlDdv~~~~-----------~~~~~~l~~-------~~ 294 (695)
+.... .+... . .+..++ .....++.+|+||+++... ......+.. ..
T Consensus 204 -l~~~~---~g~~~----~------~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~ 269 (444)
T 2zan_A 204 -LVSKW---LGESE----K------LVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDN 269 (444)
T ss_dssp ------------CC----C------THHHHHHHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCC
T ss_pred -HHhhh---cchHH----H------HHHHHHHHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCC
Confidence 11111 11110 0 112222 1113568899999997541 112222221 12
Q ss_pred CCCEEEEEcCCCC-------CCCCCeEecCCCChHHHHHHHHHhccCCCCCCCCCchHHHHHHHHhcCCc-hhHHHHHH
Q 042541 295 PDYKILVTSRSEF-------PQFGSVHYLKPLTYEAARTLFLHSANLQDGNSYIPDENIVSKILRACKGC-PLALKVVG 365 (695)
Q Consensus 295 ~gs~iivTtR~~~-------~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~G~-PLai~~~~ 365 (695)
.+..||.||.... ......+.++..+.++-..+|...+...... ........|++.+.|. +-.|..+.
T Consensus 270 ~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~---l~~~~l~~la~~t~G~sgadl~~l~ 345 (444)
T 2zan_A 270 DGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQNS---LTEADFQELGRKTDGYSGADISIIV 345 (444)
T ss_dssp SSCEEEEEESCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCEE---CCHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred CCEEEEecCCCccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCCCC---CCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 3456666665431 2333477888888888888888776432211 1245678889999884 44454443
No 193
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.93 E-value=0.00032 Score=73.87 Aligned_cols=164 Identities=14% Similarity=0.141 Sum_probs=96.3
Q ss_pred CCCCCCcchHHHHHHHHH----c---------CCceEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCCCCCH
Q 042541 166 VISPGLDVPLKELKMELF----K---------DGRQFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSKNPNV 232 (695)
Q Consensus 166 ~~~vGr~~~~~~l~~~L~----~---------~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~~~~~ 232 (695)
+.+.|.++.+++|.+.+. . ..++=|.++|++|+|||.||+++++. .. ...+.++.+.-.+
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e--~~----~~~~~v~~s~l~s- 253 (437)
T 4b4t_L 181 DGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAAT--IG----ANFIFSPASGIVD- 253 (437)
T ss_dssp GGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHH--HT----CEEEEEEGGGTCC-
T ss_pred hHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHH--hC----CCEEEEehhhhcc-
Confidence 456788888888877664 1 22577999999999999999999983 32 2244555443211
Q ss_pred HHHHHHHHHhcCCCCCCCCChHHHHHHHHHHH-HhcCCCcEEEEEeCCCCCC-----------h-------HHHhhhcc-
Q 042541 233 KAIVQKVLHHKGYPVPEFQTDEAAINDLERFF-KQMRIEAILLVLDDVWPGS-----------E-------SLLQKLGF- 292 (695)
Q Consensus 233 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~-~~l~~~~~LlVlDdv~~~~-----------~-------~~~~~l~~- 292 (695)
. ...+....++.++ ..-...+++|++|+++... . .++..+..
T Consensus 254 -------------k-----~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~ 315 (437)
T 4b4t_L 254 -------------K-----YIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGF 315 (437)
T ss_dssp -------------S-----SSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSS
T ss_pred -------------c-----cchHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcc
Confidence 0 1112223344444 3334678999999986421 0 02222221
Q ss_pred -CCCCCEEEEEcCCCC------CCCC---CeEecCCCChHHHHHHHHHhccCCCCCCCCCchHHHHHHHHhcCCch
Q 042541 293 -QLPDYKILVTSRSEF------PQFG---SVHYLKPLTYEAARTLFLHSANLQDGNSYIPDENIVSKILRACKGCP 358 (695)
Q Consensus 293 -~~~gs~iivTtR~~~------~~~~---~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~G~P 358 (695)
...+..||.||.... ...| ..+.++.-+.++-.++|+.+.......... ....|++.+.|+-
T Consensus 316 ~~~~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~----dl~~lA~~t~G~s 387 (437)
T 4b4t_L 316 DNLGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEF----DFEAAVKMSDGFN 387 (437)
T ss_dssp SCTTSSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCC----CHHHHHHTCCSCC
T ss_pred cCCCCeEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCCccc----CHHHHHHhCCCCC
Confidence 223456777776541 1223 267788888888888887765433221111 1567788888753
No 194
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=97.93 E-value=3.1e-05 Score=83.51 Aligned_cols=140 Identities=11% Similarity=0.097 Sum_probs=79.3
Q ss_pred CCCCCCcchHHHHHHHHHcCCceEEEEEcCCCCcHHHHHHHHhccccccccC------CCcEEEEEeCCCCCHHHHHHHH
Q 042541 166 VISPGLDVPLKELKMELFKDGRQFIVVSAPGGYGKTTLVQRLCKDDQVQGKF------KDDIFYVTVSKNPNVKAIVQKV 239 (695)
Q Consensus 166 ~~~vGr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f------~~~~~wv~~~~~~~~~~~~~~i 239 (695)
+.+|||+.+++++...|......-+.|+|++|+|||++|+.+++ .+...+ ...++.++++.
T Consensus 180 d~iiGr~~~i~~l~~~l~r~~~~~~LL~G~pG~GKT~la~~la~--~l~~~~~p~~l~~~~~~~l~~~~----------- 246 (468)
T 3pxg_A 180 DPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQ--QIINNEVPEILRDKRVMTLDMGT----------- 246 (468)
T ss_dssp CCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHH--HHHSSCSCTTTSSCCEECC---------------
T ss_pred CCccCcHHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHH--HHHhCCCChhhcCCeEEEeeCCc-----------
Confidence 45899999999999999866566778999999999999999987 332211 22233333330
Q ss_pred HHhcCCCCCCCCChHHHHHHHHHHHHh-cCCCcEEEEEeCCCCCChHHHhhhccCC-C-CCEEEEEcCCCC-----CCCC
Q 042541 240 LHHKGYPVPEFQTDEAAINDLERFFKQ-MRIEAILLVLDDVWPGSESLLQKLGFQL-P-DYKILVTSRSEF-----PQFG 311 (695)
Q Consensus 240 ~~~l~~~~~~~~~~~~~~~~l~~~~~~-l~~~~~LlVlDdv~~~~~~~~~~l~~~~-~-gs~iivTtR~~~-----~~~~ 311 (695)
...+. ....+..++.. -..++.+|++|. .. .....+.... . ..++|.+|.... ....
T Consensus 247 --~~~g~---------~e~~~~~~~~~~~~~~~~iLfiD~--~~--~a~~~L~~~L~~g~v~vI~at~~~e~~~~~~~~~ 311 (468)
T 3pxg_A 247 --KYRGE---------FEDRLKKVMDEIRQAGNIILFIDA--AI--DASNILKPSLARGELQCIGATTLDEYRKYIEKDA 311 (468)
T ss_dssp -----------------CTTHHHHHHHHHTCCCCEEEECC------------CCCTTSSSCEEEEECCTTTTHHHHTTCS
T ss_pred --cccch---------HHHHHHHHHHHHHhcCCeEEEEeC--ch--hHHHHHHHhhcCCCEEEEecCCHHHHHHHhhcCH
Confidence 00000 00122333321 135678999991 11 1112222211 2 356666554432 1111
Q ss_pred ------CeEecCCCChHHHHHHHHHhcc
Q 042541 312 ------SVHYLKPLTYEAARTLFLHSAN 333 (695)
Q Consensus 312 ------~~~~l~~L~~~ea~~Lf~~~~~ 333 (695)
..+.+++.+.++..+++...+.
T Consensus 312 al~~Rf~~i~v~~p~~e~~~~iL~~~~~ 339 (468)
T 3pxg_A 312 ALERRFQPIQVDQPSVDESIQILQGLRD 339 (468)
T ss_dssp HHHHSEEEEECCCCCHHHHHHHHHHTTT
T ss_pred HHHHhCccceeCCCCHHHHHHHHHHHHH
Confidence 1688999999999999987653
No 195
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=97.92 E-value=4e-05 Score=77.98 Aligned_cols=146 Identities=14% Similarity=0.107 Sum_probs=85.0
Q ss_pred CCCCCcchHHHHHHHHH---------------cCCceEEEEEcCCCCcHHHHHHHHhccccccccC-CCcEEEEEeCCCC
Q 042541 167 ISPGLDVPLKELKMELF---------------KDGRQFIVVSAPGGYGKTTLVQRLCKDDQVQGKF-KDDIFYVTVSKNP 230 (695)
Q Consensus 167 ~~vGr~~~~~~l~~~L~---------------~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f-~~~~~wv~~~~~~ 230 (695)
.++|.+..++.|.+.+. ......+.|+|++|+|||++|+.+++........ ...++.++.+.
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~-- 109 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDD-- 109 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGG--
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHH--
Confidence 46999998888877654 2234579999999999999999887732111111 11133333221
Q ss_pred CHHHHHHHHHHhcCCCCCCCCChHHHHHHHHHHHHhcCCCcEEEEEeCCCCC---------ChH----HHhhhccCCCCC
Q 042541 231 NVKAIVQKVLHHKGYPVPEFQTDEAAINDLERFFKQMRIEAILLVLDDVWPG---------SES----LLQKLGFQLPDY 297 (695)
Q Consensus 231 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~~~LlVlDdv~~~---------~~~----~~~~l~~~~~gs 297 (695)
+...... .. ...+...++.. +..+|++|+++.. ... ++..+.....+.
T Consensus 110 ------------l~~~~~g--~~---~~~~~~~~~~~--~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~ 170 (309)
T 3syl_A 110 ------------LVGQYIG--HT---APKTKEVLKRA--MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDL 170 (309)
T ss_dssp ------------TCCSSTT--CH---HHHHHHHHHHH--TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTC
T ss_pred ------------hhhhccc--cc---HHHHHHHHHhc--CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCE
Confidence 1110000 11 12233444222 3469999999743 322 333344444567
Q ss_pred EEEEEcCCCC--------C----CCCCeEecCCCChHHHHHHHHHhcc
Q 042541 298 KILVTSRSEF--------P----QFGSVHYLKPLTYEAARTLFLHSAN 333 (695)
Q Consensus 298 ~iivTtR~~~--------~----~~~~~~~l~~L~~~ea~~Lf~~~~~ 333 (695)
.+|+||.... . .....+.+++++.++-.+++...+.
T Consensus 171 ~~i~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~ 218 (309)
T 3syl_A 171 VVILAGYADRMENFFQSNPGFRSRIAHHIEFPDYSDEELFEIAGHMLD 218 (309)
T ss_dssp EEEEEECHHHHHHHHHHSTTHHHHEEEEEEECCCCHHHHHHHHHHHHH
T ss_pred EEEEeCChHHHHHHHhhCHHHHHhCCeEEEcCCcCHHHHHHHHHHHHH
Confidence 8888775320 1 1224789999999999999987664
No 196
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.90 E-value=4e-05 Score=71.15 Aligned_cols=112 Identities=15% Similarity=0.166 Sum_probs=60.3
Q ss_pred hHHHHHHHHHc---CCceEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCCCCCHHHHHHHHHHhcCCCCCCC
Q 042541 174 PLKELKMELFK---DGRQFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSKNPNVKAIVQKVLHHKGYPVPEF 250 (695)
Q Consensus 174 ~~~~l~~~L~~---~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~ 250 (695)
.++.+.+++.+ .....+.|+|++|+|||||++.+++.......+. +++++ ..++...+.........
T Consensus 22 ~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~--~~~~~------~~~~~~~~~~~~~~~~~-- 91 (180)
T 3ec2_A 22 ALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIR--GYFFD------TKDLIFRLKHLMDEGKD-- 91 (180)
T ss_dssp HHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCC--CCEEE------HHHHHHHHHHHHHHTCC--
T ss_pred HHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCe--EEEEE------HHHHHHHHHHHhcCchH--
Confidence 34444444432 2357899999999999999999988322122222 33544 34444444443321110
Q ss_pred CChHHHHHHHHHHHHhcCCCcEEEEEeCCCC--CChHHHhh----hcc-CCCCCEEEEEcCCC
Q 042541 251 QTDEAAINDLERFFKQMRIEAILLVLDDVWP--GSESLLQK----LGF-QLPDYKILVTSRSE 306 (695)
Q Consensus 251 ~~~~~~~~~l~~~~~~l~~~~~LlVlDdv~~--~~~~~~~~----l~~-~~~gs~iivTtR~~ 306 (695)
... ++.+ .+.-+|||||++. .+.+.... +.. ...|..+|+||...
T Consensus 92 ---~~~-------~~~~-~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~ 143 (180)
T 3ec2_A 92 ---TKF-------LKTV-LNSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYS 143 (180)
T ss_dssp ---SHH-------HHHH-HTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCC
T ss_pred ---HHH-------HHHh-cCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 011 1111 2456899999973 33332111 111 12578899988744
No 197
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.85 E-value=0.00032 Score=73.67 Aligned_cols=163 Identities=14% Similarity=0.118 Sum_probs=96.0
Q ss_pred CCCCCCcchHHHHHHHHH----c---------CCceEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCCCCCH
Q 042541 166 VISPGLDVPLKELKMELF----K---------DGRQFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSKNPNV 232 (695)
Q Consensus 166 ~~~vGr~~~~~~l~~~L~----~---------~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~~~~~ 232 (695)
+.+.|.++.+++|.+.+. . ..++-|.++|++|+|||.||+++++ ..... .+.++.+.-.+
T Consensus 209 ~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~--e~~~~----fi~vs~s~L~s- 281 (467)
T 4b4t_H 209 SDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVAN--RTDAT----FIRVIGSELVQ- 281 (467)
T ss_dssp SSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHH--HHTCE----EEEEEGGGGCC-
T ss_pred HHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHh--ccCCC----eEEEEhHHhhc-
Confidence 357888888888877543 1 2367799999999999999999998 33222 34454443110
Q ss_pred HHHHHHHHHhcCCCCCCCCChHHHHHHHHHHH-HhcCCCcEEEEEeCCCCCCh-----------H-------HHhhhccC
Q 042541 233 KAIVQKVLHHKGYPVPEFQTDEAAINDLERFF-KQMRIEAILLVLDDVWPGSE-----------S-------LLQKLGFQ 293 (695)
Q Consensus 233 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~-~~l~~~~~LlVlDdv~~~~~-----------~-------~~~~l~~~ 293 (695)
. -..+....++.++ ..-...+++|++|+++.... . ++..+...
T Consensus 282 -------------k-----~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~ 343 (467)
T 4b4t_H 282 -------------K-----YVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGF 343 (467)
T ss_dssp -------------C-----SSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSS
T ss_pred -------------c-----cCCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhcc
Confidence 0 1112223344444 33346789999999864320 0 22222222
Q ss_pred C--CCCEEEEEcCCCC---------CCCCCeEecCCCChHHHHHHHHHhccCCCCCCCCCchHHHHHHHHhcCCc
Q 042541 294 L--PDYKILVTSRSEF---------PQFGSVHYLKPLTYEAARTLFLHSANLQDGNSYIPDENIVSKILRACKGC 357 (695)
Q Consensus 294 ~--~gs~iivTtR~~~---------~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~G~ 357 (695)
. .+..||.||.... ......+.++.-+.++-.++|+.+.......... ....|++.|.|.
T Consensus 344 ~~~~~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dv----dl~~LA~~T~Gf 414 (467)
T 4b4t_H 344 DPRGNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGI----RWELISRLCPNS 414 (467)
T ss_dssp CCTTTEEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSC----CHHHHHHHCCSC
T ss_pred CCCCcEEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCCCC----CHHHHHHHCCCC
Confidence 2 2334555665441 1334478888888888889998766433221111 146788888875
No 198
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.82 E-value=1.5e-05 Score=72.73 Aligned_cols=80 Identities=10% Similarity=0.099 Sum_probs=38.0
Q ss_pred ceEEEEEEccCccccCChhhcCCCCCcEEEEcccC-CCCcccCcccccccC----CCCcEEEeccCC-CCCcc--ccccc
Q 042541 551 EVKVVVLNIRTKKYVLPDFLQKMDELKVLIVTNYG-FSPAELNNFRVLSAL----SKLKKIRLEHVS-LPNSL--ATVRM 622 (695)
Q Consensus 551 ~l~~L~l~~~~~~~~~p~~~~~l~~Lr~L~l~~~~-~~~~~~~~~~~l~~l----~~L~~L~L~~~~-l~~lp--~i~~l 622 (695)
+|+.|+++.+.....--..+.++++|+.|+|++|. +....+.. ++.+ ++|++|+|++|. ++.-. .+.++
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~---L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~ 138 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLER---LSQLENLQKSMLEMEIISCGNVTDKGIIALHHF 138 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHH---HHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHH---HHhcccccCCCCEEEcCCCCcCCHHHHHHHhcC
Confidence 45666665553222212234556666666666553 22222211 2222 246666666653 55322 44455
Q ss_pred ccccEEeeccc
Q 042541 623 NHLQKVSLVMC 633 (695)
Q Consensus 623 ~~L~~L~l~~~ 633 (695)
++|++|+|++|
T Consensus 139 ~~L~~L~L~~c 149 (176)
T 3e4g_A 139 RNLKYLFLSDL 149 (176)
T ss_dssp TTCCEEEEESC
T ss_pred CCCCEEECCCC
Confidence 66666666666
No 199
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=97.81 E-value=0.00016 Score=73.00 Aligned_cols=141 Identities=14% Similarity=0.063 Sum_probs=89.6
Q ss_pred CCcchHHHHHHHHHcCCceEEEEEcCCCCcHHHHHHHHhcccc-ccccCCCcEEEEEeCC-CCCHHHHHHHHHHhcCCCC
Q 042541 170 GLDVPLKELKMELFKDGRQFIVVSAPGGYGKTTLVQRLCKDDQ-VQGKFKDDIFYVTVSK-NPNVKAIVQKVLHHKGYPV 247 (695)
Q Consensus 170 Gr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~-~~~~f~~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~ 247 (695)
|-++.++.+...+..+..+...++|+.|+||||+|+.+.+... ....... +.+++.++ ...+..+ +++++.+....
T Consensus 1 g~~~~~~~L~~~i~~~~~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d-~~~l~~~~~~~~id~i-r~li~~~~~~p 78 (305)
T 2gno_A 1 GAKDQLETLKRIIEKSEGISILINGEDLSYPREVSLELPEYVEKFPPKASD-VLEIDPEGENIGIDDI-RTIKDFLNYSP 78 (305)
T ss_dssp ---CHHHHHHHHHHTCSSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTT-EEEECCSSSCBCHHHH-HHHHHHHTSCC
T ss_pred ChHHHHHHHHHHHHCCCCcEEEEECCCCCCHHHHHHHHHHhCchhhccCCC-EEEEcCCcCCCCHHHH-HHHHHHHhhcc
Confidence 4456677888888866678999999999999999999986311 1112233 45655443 2333332 33444332211
Q ss_pred CCCCChHHHHHHHHHHHHhcCCCcEEEEEeCCCCCChH----HHhhhccCCCCCEEEEEcCCCC-----CCCCCeEecCC
Q 042541 248 PEFQTDEAAINDLERFFKQMRIEAILLVLDDVWPGSES----LLQKLGFQLPDYKILVTSRSEF-----PQFGSVHYLKP 318 (695)
Q Consensus 248 ~~~~~~~~~~~~l~~~~~~l~~~~~LlVlDdv~~~~~~----~~~~l~~~~~gs~iivTtR~~~-----~~~~~~~~l~~ 318 (695)
..+++-++|+|+++..... ++..+....+.+.+|++|.+.. .... .+++++
T Consensus 79 -------------------~~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR-~~~f~~ 138 (305)
T 2gno_A 79 -------------------ELYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSR-VFRVVV 138 (305)
T ss_dssp -------------------SSSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTT-SEEEEC
T ss_pred -------------------ccCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHce-eEeCCC
Confidence 1356789999999776533 4455555556778887765441 1112 899999
Q ss_pred CChHHHHHHHHHhc
Q 042541 319 LTYEAARTLFLHSA 332 (695)
Q Consensus 319 L~~~ea~~Lf~~~~ 332 (695)
+++++..+.+.+.+
T Consensus 139 l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 139 NVPKEFRDLVKEKI 152 (305)
T ss_dssp CCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHh
Confidence 99999999998775
No 200
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.81 E-value=6.9e-06 Score=76.78 Aligned_cols=119 Identities=13% Similarity=0.064 Sum_probs=78.0
Q ss_pred CChhhcCCCCCcEEEEccc-CCCCcccCcc-cccccCCCCcEEEeccCCCCC-----cc-cccccccccEEeeccccCCc
Q 042541 566 LPDFLQKMDELKVLIVTNY-GFSPAELNNF-RVLSALSKLKKIRLEHVSLPN-----SL-ATVRMNHLQKVSLVMCNVGQ 637 (695)
Q Consensus 566 ~p~~~~~l~~Lr~L~l~~~-~~~~~~~~~~-~~l~~l~~L~~L~L~~~~l~~-----lp-~i~~l~~L~~L~l~~~~i~~ 637 (695)
+...+...+.|+.|+|++| .+.......+ ..+...++|++|+|++|.+.. +. .+...++|++|+|++|.|..
T Consensus 28 l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~ 107 (185)
T 1io0_A 28 LKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISG 107 (185)
T ss_dssp HHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCH
T ss_pred HHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCH
Confidence 3445677888999999887 6643332222 235566788999999988863 33 45566789999999998775
Q ss_pred ccccch-hhhcccCCCccEEec--cccccccc-----CchhhcCCCCCceeeccccc
Q 042541 638 VFRNST-FRISDAFPNLLEMDI--DYCNDLIE-----LPDGLCDIVSMEKLRITNCH 686 (695)
Q Consensus 638 ~~~~~~-~~l~~~l~~L~~L~l--~~c~~l~~-----lP~~i~~L~~L~~L~l~~~~ 686 (695)
.--..+ ..+. ..++|++|+| ++| .++. +...+...++|++|+|++|.
T Consensus 108 ~g~~~l~~~L~-~n~~L~~L~L~~~~N-~i~~~g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 108 SGILALVEALQ-SNTSLIELRIDNQSQ-PLGNNVEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp HHHHHHHHGGG-GCSSCCEEECCCCSS-CCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred HHHHHHHHHHH-hCCCceEEEecCCCC-CCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence 211111 1111 5678999999 554 3443 44556677899999998875
No 201
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.80 E-value=9.8e-05 Score=86.00 Aligned_cols=171 Identities=12% Similarity=0.127 Sum_probs=91.4
Q ss_pred CCCCCCCcchHHHHHHHHHcCCceEEEEEcCCCCcHHHHHHHHhccccccc-----cC-CCcEEEEEeCCCCCHHHHHHH
Q 042541 165 PVISPGLDVPLKELKMELFKDGRQFIVVSAPGGYGKTTLVQRLCKDDQVQG-----KF-KDDIFYVTVSKNPNVKAIVQK 238 (695)
Q Consensus 165 ~~~~vGr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~-----~f-~~~~~wv~~~~~~~~~~~~~~ 238 (695)
-+.+|||+.+++++++.|......-+.|+|++|+|||++|+.+++. +.. .. ...+++++++.-..
T Consensus 169 ld~viGr~~~i~~l~~~l~~~~~~~vlL~G~pG~GKT~la~~la~~--l~~~~~p~~l~~~~~~~l~~~~l~~------- 239 (854)
T 1qvr_A 169 LDPVIGRDEEIRRVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQR--IVKGDVPEGLKGKRIVSLQMGSLLA------- 239 (854)
T ss_dssp SCCCCSCHHHHHHHHHHHHCSSCCCCEEEECTTSCHHHHHHHHHHH--HHHTCSCTTSTTCEEEEECC------------
T ss_pred CcccCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHH--HhcCCCchhhcCCeEEEeehHHhhc-------
Confidence 3457999999999999998766667889999999999999999873 311 11 23344554432110
Q ss_pred HHHhcCCCCCCCCChHHHHHHHHHHHHhc--CCCcEEEEEeCCCCCC--------hH---HHhhhccCCCCCEEEEEcC-
Q 042541 239 VLHHKGYPVPEFQTDEAAINDLERFFKQM--RIEAILLVLDDVWPGS--------ES---LLQKLGFQLPDYKILVTSR- 304 (695)
Q Consensus 239 i~~~l~~~~~~~~~~~~~~~~l~~~~~~l--~~~~~LlVlDdv~~~~--------~~---~~~~l~~~~~gs~iivTtR- 304 (695)
+.. ...+....+..++..+ .+++.+|++|++.... .. .+..+... .+..+|.+|.
T Consensus 240 -----g~~-----~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~~-~~i~~I~at~~ 308 (854)
T 1qvr_A 240 -----GAK-----YRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALAR-GELRLIGATTL 308 (854)
T ss_dssp ----------------CHHHHHHHHHHHHHTTCSSEEEEECCC-------------------HHHHHT-TCCCEEEEECH
T ss_pred -----cCc-----cchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccchHHHHHHHHHHHhC-CCeEEEEecCc
Confidence 000 0011223344444333 2468999999996543 11 12222211 2344555443
Q ss_pred CC------CCC---CCCeEecCCCChHHHHHHHHHhccCCCCC-CCCCchHHHHHHHHhcC
Q 042541 305 SE------FPQ---FGSVHYLKPLTYEAARTLFLHSANLQDGN-SYIPDENIVSKILRACK 355 (695)
Q Consensus 305 ~~------~~~---~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~-~~~~~~~~~~~I~~~c~ 355 (695)
.. ... --..+.+++++.++..+++.......... ...-..+....+++.+.
T Consensus 309 ~~~~~~~~d~aL~rRf~~i~l~~p~~~e~~~iL~~~~~~~~~~~~~~i~~~al~~~~~ls~ 369 (854)
T 1qvr_A 309 DEYREIEKDPALERRFQPVYVDEPTVEETISILRGLKEKYEVHHGVRISDSAIIAAATLSH 369 (854)
T ss_dssp HHHHHHTTCTTTCSCCCCEEECCCCHHHHHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHH
T ss_pred hHHhhhccCHHHHhCCceEEeCCCCHHHHHHHHHhhhhhhhhhcCCCCCHHHHHHHHHHHh
Confidence 21 111 11258899999999999987543211000 00112455666666663
No 202
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.78 E-value=5.6e-05 Score=71.57 Aligned_cols=117 Identities=14% Similarity=0.139 Sum_probs=62.6
Q ss_pred CCCCCcc----hHHHHHHHHHcCC----ceEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCCCCCHHHHHHH
Q 042541 167 ISPGLDV----PLKELKMELFKDG----RQFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSKNPNVKAIVQK 238 (695)
Q Consensus 167 ~~vGr~~----~~~~l~~~L~~~~----~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~~~~~~~~~~~ 238 (695)
.|++.+. .++.+..++.... .+.+.|+|++|+|||+||+.+++ ........ ++|++++ ++...
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~--~~~~~~~~-~~~~~~~------~~~~~ 96 (202)
T 2w58_A 26 DVDLNDDGRIKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIAN--ELAKRNVS-SLIVYVP------ELFRE 96 (202)
T ss_dssp SSCCSSHHHHHHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHH--HHHTTTCC-EEEEEHH------HHHHH
T ss_pred hccCCChhHHHHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHH--HHHHcCCe-EEEEEhH------HHHHH
Confidence 4565443 3444555555331 27899999999999999999998 33333223 6677654 44455
Q ss_pred HHHhcCCCCCCCCChHHHHHHHHHHHHhcCCCcEEEEEeCCCCCC--hH----HHhhhc-cC-CCCCEEEEEcCC
Q 042541 239 VLHHKGYPVPEFQTDEAAINDLERFFKQMRIEAILLVLDDVWPGS--ES----LLQKLG-FQ-LPDYKILVTSRS 305 (695)
Q Consensus 239 i~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~~~LlVlDdv~~~~--~~----~~~~l~-~~-~~gs~iivTtR~ 305 (695)
+....... ...... ..+ .. .-+|||||++... .+ ++..+. .. ..+..+|+||..
T Consensus 97 ~~~~~~~~-----~~~~~~----~~~---~~-~~~lilDei~~~~~~~~~~~~ll~~~l~~~~~~~~~~i~tsn~ 158 (202)
T 2w58_A 97 LKHSLQDQ-----TMNEKL----DYI---KK-VPVLMLDDLGAEAMSSWVRDDVFGPILQYRMFENLPTFFTSNF 158 (202)
T ss_dssp HHHC---C-----CCHHHH----HHH---HH-SSEEEEEEECCC---CCGGGTTHHHHHHHHHHTTCCEEEEESS
T ss_pred HHHHhccc-----hHHHHH----HHh---cC-CCEEEEcCCCCCcCCHHHHHHHHHHHHHHHHhCCCCEEEEcCC
Confidence 54433211 111111 112 11 2399999995532 11 222111 11 245678888873
No 203
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.74 E-value=0.00059 Score=70.95 Aligned_cols=163 Identities=12% Similarity=0.101 Sum_probs=93.1
Q ss_pred CCCCCCcchHHHHHHHHH----c---------CCceEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCCCCCH
Q 042541 166 VISPGLDVPLKELKMELF----K---------DGRQFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSKNPNV 232 (695)
Q Consensus 166 ~~~vGr~~~~~~l~~~L~----~---------~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~~~~~ 232 (695)
+.+.|.++.+++|.+.+. . ..++=|.++|++|+|||.||+++++. .... .+.++.++-.
T Consensus 182 ~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e--~~~~----fi~v~~s~l~-- 253 (437)
T 4b4t_I 182 SDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQ--TSAT----FLRIVGSELI-- 253 (437)
T ss_dssp GGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHH--HTCE----EEEEESGGGC--
T ss_pred eecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHH--hCCC----EEEEEHHHhh--
Confidence 456788988888877654 1 22577999999999999999999983 3222 3344433211
Q ss_pred HHHHHHHHHhcCCCCCCCCChHHHHHHHHHHH-HhcCCCcEEEEEeCCCCCC------------h--H----HHhhhcc-
Q 042541 233 KAIVQKVLHHKGYPVPEFQTDEAAINDLERFF-KQMRIEAILLVLDDVWPGS------------E--S----LLQKLGF- 292 (695)
Q Consensus 233 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~-~~l~~~~~LlVlDdv~~~~------------~--~----~~~~l~~- 292 (695)
.. ...+....++.++ ..-...+++|++|+++... . . ++..+..
T Consensus 254 ------------sk-----~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~ 316 (437)
T 4b4t_I 254 ------------QK-----YLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGF 316 (437)
T ss_dssp ------------CS-----SSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHC
T ss_pred ------------hc-----cCchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCc
Confidence 00 1112223344444 2224678999999985321 0 0 2222221
Q ss_pred -CCCCCEEEEEcCCCC------CCCCC---eEecCCCChHHHHHHHHHhccCCCCCCCCCchHHHHHHHHhcCCc
Q 042541 293 -QLPDYKILVTSRSEF------PQFGS---VHYLKPLTYEAARTLFLHSANLQDGNSYIPDENIVSKILRACKGC 357 (695)
Q Consensus 293 -~~~gs~iivTtR~~~------~~~~~---~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~G~ 357 (695)
...+..||.||-... ...|. .+.++.-+.++-.++|..+.......... ....|++.+.|+
T Consensus 317 ~~~~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dv----dl~~LA~~T~Gf 387 (437)
T 4b4t_I 317 DDRGDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDV----NLETLVTTKDDL 387 (437)
T ss_dssp CCSSSEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCC----CHHHHHHHCCSC
T ss_pred CCCCCEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCCCcC----CHHHHHHhCCCC
Confidence 122345555665441 12233 57788888888888888766432221111 156777888775
No 204
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.73 E-value=0.00016 Score=73.34 Aligned_cols=57 Identities=23% Similarity=0.263 Sum_probs=42.3
Q ss_pred CCCCCCcchHHHHHHHHHc--------------CCceEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCC
Q 042541 166 VISPGLDVPLKELKMELFK--------------DGRQFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSK 228 (695)
Q Consensus 166 ~~~vGr~~~~~~l~~~L~~--------------~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~ 228 (695)
..++|.+..++.+...+.. ....-+.|+|++|+|||++|+.+++. . ....+.++.+.
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~--l----~~~~~~i~~~~ 85 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKL--A----NAPFIKVEATK 85 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHH--H----TCCEEEEEGGG
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHH--h----CCCEEEEcchh
Confidence 3579999999999877753 23466889999999999999999873 3 22245666554
No 205
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.73 E-value=0.00032 Score=73.74 Aligned_cols=163 Identities=13% Similarity=0.098 Sum_probs=93.3
Q ss_pred CCCCCCcchHHHHHHHHH----c---------CCceEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCCCCCH
Q 042541 166 VISPGLDVPLKELKMELF----K---------DGRQFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSKNPNV 232 (695)
Q Consensus 166 ~~~vGr~~~~~~l~~~L~----~---------~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~~~~~ 232 (695)
+.+.|.++.+++|.+.+. . ..++-|.++|++|+|||.||+++++ .... ..+.++.+.-.
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~--e~~~----~f~~v~~s~l~-- 252 (434)
T 4b4t_M 181 SDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAA--QTNA----TFLKLAAPQLV-- 252 (434)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHH--HHTC----EEEEEEGGGGC--
T ss_pred HhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHH--HhCC----CEEEEehhhhh--
Confidence 467889988888877643 1 2257799999999999999999998 3322 23455544311
Q ss_pred HHHHHHHHHhcCCCCCCCCChHHHHHHHHHHH-HhcCCCcEEEEEeCCCCC-------C----hH-------HHhhhccC
Q 042541 233 KAIVQKVLHHKGYPVPEFQTDEAAINDLERFF-KQMRIEAILLVLDDVWPG-------S----ES-------LLQKLGFQ 293 (695)
Q Consensus 233 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~-~~l~~~~~LlVlDdv~~~-------~----~~-------~~~~l~~~ 293 (695)
.. ...+....++.++ ..-...+++|++|+++.. . .. ++..+...
T Consensus 253 ------------~~-----~vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~ 315 (434)
T 4b4t_M 253 ------------QM-----YIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGF 315 (434)
T ss_dssp ------------SS-----CSSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTS
T ss_pred ------------hc-----ccchHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhcc
Confidence 00 1111223344444 222456899999998421 0 00 22222221
Q ss_pred --CCCCEEEEEcCCCC------CCCCC---eEecCCCChHHHHHHHHHhccCCCCCCCCCchHHHHHHHHhcCCc
Q 042541 294 --LPDYKILVTSRSEF------PQFGS---VHYLKPLTYEAARTLFLHSANLQDGNSYIPDENIVSKILRACKGC 357 (695)
Q Consensus 294 --~~gs~iivTtR~~~------~~~~~---~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~G~ 357 (695)
..+..||.||.... ...|. .+.++.-+.++-.++|+.+.......... -...|++.+.|+
T Consensus 316 ~~~~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dv----dl~~lA~~t~G~ 386 (434)
T 4b4t_M 316 SSDDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDI----NWQELARSTDEF 386 (434)
T ss_dssp CSSCSSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCC----CHHHHHHHCSSC
T ss_pred CCCCCEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcC----CHHHHHHhCCCC
Confidence 22345665776542 12233 67888888888888887655332211111 146678888775
No 206
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.69 E-value=7.4e-05 Score=66.39 Aligned_cols=43 Identities=14% Similarity=0.155 Sum_probs=33.5
Q ss_pred CCCCCcchHHHHHHHHH--cCCceEEEEEcCCCCcHHHHHHHHhc
Q 042541 167 ISPGLDVPLKELKMELF--KDGRQFIVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 167 ~~vGr~~~~~~l~~~L~--~~~~~vv~I~G~gGiGKTtLa~~~~~ 209 (695)
.++|++..++++.+.+. .....-|.|+|.+|+|||++|+.+++
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~ 49 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHK 49 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCC
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHH
Confidence 46999999999888876 23334578999999999999999987
No 207
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.68 E-value=0.00051 Score=72.17 Aligned_cols=163 Identities=17% Similarity=0.150 Sum_probs=90.1
Q ss_pred CCCCCCcchHHHHHHHHH----c---------CCceEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCCCCCH
Q 042541 166 VISPGLDVPLKELKMELF----K---------DGRQFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSKNPNV 232 (695)
Q Consensus 166 ~~~vGr~~~~~~l~~~L~----~---------~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~~~~~ 232 (695)
+.+.|.++.+++|.+.+. . ..++=|.++|++|+|||+||+++++. .. ...+.++.++-.+
T Consensus 172 ~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~--~~----~~~~~v~~~~l~~- 244 (428)
T 4b4t_K 172 ADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANS--TK----AAFIRVNGSEFVH- 244 (428)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHH--HT----CEEEEEEGGGTCC-
T ss_pred HHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHH--hC----CCeEEEecchhhc-
Confidence 466889988888877664 1 22566999999999999999999983 32 2244555543211
Q ss_pred HHHHHHHHHhcCCCCCCCCChHHHHHHHHHHH-HhcCCCcEEEEEeCCCCC-----------C-h--H----HHhhhcc-
Q 042541 233 KAIVQKVLHHKGYPVPEFQTDEAAINDLERFF-KQMRIEAILLVLDDVWPG-----------S-E--S----LLQKLGF- 292 (695)
Q Consensus 233 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~-~~l~~~~~LlVlDdv~~~-----------~-~--~----~~~~l~~- 292 (695)
. ...+....++.++ ..-...++++++|+++.. + . . ++..+..
T Consensus 245 -------------~-----~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~ 306 (428)
T 4b4t_K 245 -------------K-----YLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGF 306 (428)
T ss_dssp -------------S-----SCSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHS
T ss_pred -------------c-----ccchhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCC
Confidence 0 1112233444444 233467899999998310 1 1 1 2222221
Q ss_pred -CCCCCEEEEEcCCCC------CCCCC---eEecCCCChH-HHHHHHHHhccCCCCCCCCCchHHHHHHHHhcCCc
Q 042541 293 -QLPDYKILVTSRSEF------PQFGS---VHYLKPLTYE-AARTLFLHSANLQDGNSYIPDENIVSKILRACKGC 357 (695)
Q Consensus 293 -~~~gs~iivTtR~~~------~~~~~---~~~l~~L~~~-ea~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~G~ 357 (695)
...+..||.||.... ...|. .+.++.++.. +-..+|..+.......... -...|++.+.|+
T Consensus 307 ~~~~~v~vI~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~~~~----dl~~lA~~t~G~ 378 (428)
T 4b4t_K 307 DQSTNVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPEA----DLDSLIIRNDSL 378 (428)
T ss_dssp CSSCSEEEEEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBCTTC----CHHHHHHHTTTC
T ss_pred CCCCCEEEEEecCChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCCccc----CHHHHHHHCCCC
Confidence 223445666665542 12232 5677666544 4455665554322211111 146777888775
No 208
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=97.68 E-value=5.6e-05 Score=77.71 Aligned_cols=101 Identities=17% Similarity=0.096 Sum_probs=83.1
Q ss_pred CCCCCcEEEEcccCCCCcccCcccccccCCCCcEEEeccCCCCCcc--ccccccccc-EEeeccccCCcccccchhhhcc
Q 042541 572 KMDELKVLIVTNYGFSPAELNNFRVLSALSKLKKIRLEHVSLPNSL--ATVRMNHLQ-KVSLVMCNVGQVFRNSTFRISD 648 (695)
Q Consensus 572 ~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~lp--~i~~l~~L~-~L~l~~~~i~~~~~~~~~~l~~ 648 (695)
.+++|+.+++.+|.+. .++. ..+..+.+|+.|+|.++ +..++ ++.++.+|+ .|++.. .++.+++..|.
T Consensus 224 ~~~~L~~l~L~~n~i~--~I~~-~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~---- 294 (329)
T 3sb4_A 224 YMPNLVSLDISKTNAT--TIPD-FTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFM---- 294 (329)
T ss_dssp HCTTCCEEECTTBCCC--EECT-TTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTT----
T ss_pred hcCCCeEEECCCCCcc--eecH-hhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhh----
Confidence 3789999999987653 2222 23788999999999887 88888 889999999 999988 78888888887
Q ss_pred cCCCccEEecccccccccCch-hhcCCCCCceeec
Q 042541 649 AFPNLLEMDIDYCNDLIELPD-GLCDIVSMEKLRI 682 (695)
Q Consensus 649 ~l~~L~~L~l~~c~~l~~lP~-~i~~L~~L~~L~l 682 (695)
.+++|+.|+++. +.+..++. .|.++++|+.|+.
T Consensus 295 ~c~~L~~l~l~~-n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 295 GCDNLRYVLATG-DKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp TCTTEEEEEECS-SCCCEECTTTTCTTCCCCEEEC
T ss_pred CCccCCEEEeCC-CccCccchhhhcCCcchhhhcc
Confidence 899999999987 46788876 4888999998874
No 209
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.66 E-value=0.00015 Score=83.49 Aligned_cols=140 Identities=11% Similarity=0.092 Sum_probs=80.3
Q ss_pred CCCCCCcchHHHHHHHHHcCCceEEEEEcCCCCcHHHHHHHHhccccccc-----c-CCCcEEEEEeCCCCCHHHHHHHH
Q 042541 166 VISPGLDVPLKELKMELFKDGRQFIVVSAPGGYGKTTLVQRLCKDDQVQG-----K-FKDDIFYVTVSKNPNVKAIVQKV 239 (695)
Q Consensus 166 ~~~vGr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~-----~-f~~~~~wv~~~~~~~~~~~~~~i 239 (695)
+.+|||+.+++++...|......-+.++|++|+|||++|+.+++ .+.. . ....++.++.
T Consensus 180 d~iiG~~~~i~~l~~~l~~~~~~~vLL~G~pGtGKT~la~~la~--~l~~~~~p~~l~~~~~~~~~~------------- 244 (758)
T 3pxi_A 180 DPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQ--QIINNEVPEILRDKRVMTLDM------------- 244 (758)
T ss_dssp CCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHH--HHHSSCSCTTTSSCCEECC---------------
T ss_pred CCccCchHHHHHHHHHHhCCCCCCeEEECCCCCCHHHHHHHHHH--HHhcCCCChhhcCCeEEEecc-------------
Confidence 45899999999999999866666688999999999999999987 3311 1 1222323322
Q ss_pred HHhcCCCCCCCCChHHHHHHHHHHH-HhcCCCcEEEEEeCCCCCChHHHhhhccC--CCCCEEEEEcCCCC-----CCCC
Q 042541 240 LHHKGYPVPEFQTDEAAINDLERFF-KQMRIEAILLVLDDVWPGSESLLQKLGFQ--LPDYKILVTSRSEF-----PQFG 311 (695)
Q Consensus 240 ~~~l~~~~~~~~~~~~~~~~l~~~~-~~l~~~~~LlVlDdv~~~~~~~~~~l~~~--~~gs~iivTtR~~~-----~~~~ 311 (695)
+... ..+....+..++ .....++.+|++|.-.+ ....+... ....++|.||.... ....
T Consensus 245 ----g~~~-----~G~~e~~l~~~~~~~~~~~~~iLfiD~~~~----~~~~L~~~l~~~~v~~I~at~~~~~~~~~~~d~ 311 (758)
T 3pxi_A 245 ----GTKY-----RGEFEDRLKKVMDEIRQAGNIILFIDAAID----ASNILKPSLARGELQCIGATTLDEYRKYIEKDA 311 (758)
T ss_dssp -----------------CTTHHHHHHHHHTCCCCEEEECC------------CCCTTSSSCEEEEECCTTTTHHHHTTCS
T ss_pred ----cccc-----cchHHHHHHHHHHHHHhcCCEEEEEcCchh----HHHHHHHHHhcCCEEEEeCCChHHHHHHhhccH
Confidence 0000 000111233333 22246788999992111 11222221 22356666665442 1111
Q ss_pred ------CeEecCCCChHHHHHHHHHhcc
Q 042541 312 ------SVHYLKPLTYEAARTLFLHSAN 333 (695)
Q Consensus 312 ------~~~~l~~L~~~ea~~Lf~~~~~ 333 (695)
..+.+++.+.++..+++.....
T Consensus 312 al~rRf~~i~v~~p~~~~~~~il~~~~~ 339 (758)
T 3pxi_A 312 ALERRFQPIQVDQPSVDESIQILQGLRD 339 (758)
T ss_dssp HHHHSEEEEECCCCCHHHHHHHHHHTTT
T ss_pred HHHhhCcEEEeCCCCHHHHHHHHHHHHH
Confidence 2689999999999999986553
No 210
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=97.63 E-value=0.00064 Score=73.30 Aligned_cols=170 Identities=11% Similarity=0.116 Sum_probs=99.8
Q ss_pred CCCCCCcchHHHHHHHHHc-------------CCceEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCCCCCH
Q 042541 166 VISPGLDVPLKELKMELFK-------------DGRQFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSKNPNV 232 (695)
Q Consensus 166 ~~~vGr~~~~~~l~~~L~~-------------~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~~~~~ 232 (695)
..++|.+..+++|.+++.. ...+-|.|+|++|+|||++|+.+++ .. ....+.++++.
T Consensus 204 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~--~~----~~~fv~vn~~~---- 273 (489)
T 3hu3_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN--ET----GAFFFLINGPE---- 273 (489)
T ss_dssp GGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHH--HC----SSEEEEEEHHH----
T ss_pred HHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHH--Hh----CCCEEEEEchH----
Confidence 3579999999998887652 3356799999999999999999987 33 22234444321
Q ss_pred HHHHHHHHHhcCCCCCCCCChHHHHHHHHHHH-HhcCCCcEEEEEeCCCCC--------Ch-------HHHhhhccC--C
Q 042541 233 KAIVQKVLHHKGYPVPEFQTDEAAINDLERFF-KQMRIEAILLVLDDVWPG--------SE-------SLLQKLGFQ--L 294 (695)
Q Consensus 233 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~-~~l~~~~~LlVlDdv~~~--------~~-------~~~~~l~~~--~ 294 (695)
+...+. ......+...+ ....+++.+|+||+++.. .+ .++..+... .
T Consensus 274 ------l~~~~~---------g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~ 338 (489)
T 3hu3_A 274 ------IMSKLA---------GESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQR 338 (489)
T ss_dssp ------HHTSCT---------THHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTT
T ss_pred ------hhhhhc---------chhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccC
Confidence 111111 11222334444 333567899999998311 11 122222221 2
Q ss_pred CCCEEEEEcCCCC------C---CCCCeEecCCCChHHHHHHHHHhccCCCCCCCCCchHHHHHHHHhcCCc-hhHHHHH
Q 042541 295 PDYKILVTSRSEF------P---QFGSVHYLKPLTYEAARTLFLHSANLQDGNSYIPDENIVSKILRACKGC-PLALKVV 364 (695)
Q Consensus 295 ~gs~iivTtR~~~------~---~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~G~-PLai~~~ 364 (695)
.+..||.||.... . .....+.+...+.++-.+++..++....... .....++++.+.|. +-.+..+
T Consensus 339 ~~v~vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~~----~~~l~~la~~t~g~s~~dL~~L 414 (489)
T 3hu3_A 339 AHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLAD----DVDLEQVANETHGHVGADLAAL 414 (489)
T ss_dssp SCEEEEEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBCT----TCCHHHHHHTCTTCCHHHHHHH
T ss_pred CceEEEEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCcc----hhhHHHHHHHccCCcHHHHHHH
Confidence 2345555665441 1 2333788999999999999988764322211 11246677788775 5445544
No 211
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.62 E-value=6.9e-05 Score=77.71 Aligned_cols=115 Identities=20% Similarity=0.222 Sum_probs=75.9
Q ss_pred cCChhhcCCCCCcEEEEcccCCCCcccCcccccccCCCCcEEEeccCCCCCcc--ccc--ccccccEEeeccc--cCC--
Q 042541 565 VLPDFLQKMDELKVLIVTNYGFSPAELNNFRVLSALSKLKKIRLEHVSLPNSL--ATV--RMNHLQKVSLVMC--NVG-- 636 (695)
Q Consensus 565 ~~p~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~lp--~i~--~l~~L~~L~l~~~--~i~-- 636 (695)
.++..+..+++|+.|.+++|.. ..++. + .+++|+.|+|..+.++.-. .++ .+++|++|+|+.+ ...
T Consensus 163 ~L~~ll~~~P~L~~L~L~g~~~--l~l~~---~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~ 236 (362)
T 2ra8_A 163 DLSPVLDAMPLLNNLKIKGTNN--LSIGK---K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFD 236 (362)
T ss_dssp BCHHHHHTCTTCCEEEEECCBT--CBCCS---C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCC
T ss_pred CHHHHHhcCCCCcEEEEeCCCC--ceecc---c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccc
Confidence 3556778899999999998631 12221 3 3789999999998887322 443 7999999999642 111
Q ss_pred ----cccccchhhhcccCCCccEEecccccccccCchhh---cCCCCCceeecccccCCC
Q 042541 637 ----QVFRNSTFRISDAFPNLLEMDIDYCNDLIELPDGL---CDIVSMEKLRITNCHRLS 689 (695)
Q Consensus 637 ----~~~~~~~~~l~~~l~~L~~L~l~~c~~l~~lP~~i---~~L~~L~~L~l~~~~~l~ 689 (695)
.+-+.... ..+++|++|+|++|......+..+ +.+++|++|+|+.|. ++
T Consensus 237 ~~~~~l~~~l~~---~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~-L~ 292 (362)
T 2ra8_A 237 GDMNVFRPLFSK---DRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGV-LT 292 (362)
T ss_dssp SCGGGTGGGSCT---TTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSC-CB
T ss_pred hhHHHHHHHHhc---CCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCC-CC
Confidence 11111110 158999999999886543333333 358899999998864 54
No 212
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.61 E-value=5.2e-05 Score=74.59 Aligned_cols=82 Identities=13% Similarity=0.027 Sum_probs=51.0
Q ss_pred ccCCCCcEEEeccCCCCCc---c-cccccccccEEeeccccCCcccccchhhhcccCCCccEEecccccccccCch----
Q 042541 598 SALSKLKKIRLEHVSLPNS---L-ATVRMNHLQKVSLVMCNVGQVFRNSTFRISDAFPNLLEMDIDYCNDLIELPD---- 669 (695)
Q Consensus 598 ~~l~~L~~L~L~~~~l~~l---p-~i~~l~~L~~L~l~~~~i~~~~~~~~~~l~~~l~~L~~L~l~~c~~l~~lP~---- 669 (695)
.++++|+.|+|++|.+..+ | .++.+++|++|+|++|.|+.+.. . ..+. .+ +|++|+|++|.....+|.
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~-l-~~l~-~l-~L~~L~L~~Npl~~~~~~~~~y 242 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERE-L-DKIK-GL-KLEELWLDGNSLCDTFRDQSTY 242 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGG-G-GGGT-TS-CCSEEECTTSTTGGGCSSHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchh-h-hhcc-cC-CcceEEccCCcCccccCcchhH
Confidence 3466777777777777643 3 44577777777777777776521 1 1111 23 777777777665445552
Q ss_pred ---hhcCCCCCceeecc
Q 042541 670 ---GLCDIVSMEKLRIT 683 (695)
Q Consensus 670 ---~i~~L~~L~~L~l~ 683 (695)
-+..+++|+.||-.
T Consensus 243 ~~~il~~~P~L~~LDg~ 259 (267)
T 3rw6_A 243 ISAIRERFPKLLRLDGH 259 (267)
T ss_dssp HHHHHHHCTTCCEESSC
T ss_pred HHHHHHHCcccCeECCc
Confidence 25677788777753
No 213
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.60 E-value=0.00059 Score=78.53 Aligned_cols=150 Identities=11% Similarity=0.073 Sum_probs=86.9
Q ss_pred CCCCCCcchHHHHHHHHHcCCceEEEEEcCCCCcHHHHHHHHhcccc---ccc-cCCCcEEEEEeCCCCCHHHHHHHHHH
Q 042541 166 VISPGLDVPLKELKMELFKDGRQFIVVSAPGGYGKTTLVQRLCKDDQ---VQG-KFKDDIFYVTVSKNPNVKAIVQKVLH 241 (695)
Q Consensus 166 ~~~vGr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~---~~~-~f~~~~~wv~~~~~~~~~~~~~~i~~ 241 (695)
+.++||+.+++++.+.|......-+.|+|++|+|||++|+.+++... +.. .....++.++++.-
T Consensus 186 d~~iGr~~~i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l------------ 253 (758)
T 1r6b_X 186 DPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSL------------ 253 (758)
T ss_dssp CCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC--------------
T ss_pred CCccCCHHHHHHHHHHHhccCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHH------------
Confidence 46799999999999999866667789999999999999999987311 111 12332322222211
Q ss_pred hcCCCCCCCCChHHHHHHHHHHHHhc-CCCcEEEEEeCCCCCC--------h-HHHhhhccC--CCCCEEEEEcCCC---
Q 042541 242 HKGYPVPEFQTDEAAINDLERFFKQM-RIEAILLVLDDVWPGS--------E-SLLQKLGFQ--LPDYKILVTSRSE--- 306 (695)
Q Consensus 242 ~l~~~~~~~~~~~~~~~~l~~~~~~l-~~~~~LlVlDdv~~~~--------~-~~~~~l~~~--~~gs~iivTtR~~--- 306 (695)
+.... ........+..+++.+ ..++.+|++||+.... . .....+... ..+..+|.+|...
T Consensus 254 -~~~~~----~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~~~~~~~I~at~~~~~~ 328 (758)
T 1r6b_X 254 -LAGTK----YRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVIGSTTYQEFS 328 (758)
T ss_dssp --CCCC----CSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSSSCCCEEEEEECHHHHH
T ss_pred -hcccc----ccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHhCCCeEEEEEeCchHHh
Confidence 00000 0111223444555333 3457999999997551 1 122223222 2345666655432
Q ss_pred --C---CCCC---CeEecCCCChHHHHHHHHHhc
Q 042541 307 --F---PQFG---SVHYLKPLTYEAARTLFLHSA 332 (695)
Q Consensus 307 --~---~~~~---~~~~l~~L~~~ea~~Lf~~~~ 332 (695)
. .... ..+.+++.+.++..+++....
T Consensus 329 ~~~~~d~aL~~Rf~~i~v~~p~~~e~~~il~~l~ 362 (758)
T 1r6b_X 329 NIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_dssp CCCCCTTSSGGGEEEEECCCCCHHHHHHHHHHHH
T ss_pred hhhhcCHHHHhCceEEEcCCCCHHHHHHHHHHHH
Confidence 1 1111 168899999999988887654
No 214
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.56 E-value=0.0045 Score=63.42 Aligned_cols=164 Identities=18% Similarity=0.242 Sum_probs=92.4
Q ss_pred CCCCCCcchHHHHHHHHHc-----CCceEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCCCCCHHHHHHHHH
Q 042541 166 VISPGLDVPLKELKMELFK-----DGRQFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSKNPNVKAIVQKVL 240 (695)
Q Consensus 166 ~~~vGr~~~~~~l~~~L~~-----~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~~~~~~~~~~~i~ 240 (695)
+.++|.+..++.+...+.. .....+.|+|++|+||||||+.+++. .... +...+.+-.....
T Consensus 25 ~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~--l~~~----~~~~sg~~~~~~~------- 91 (334)
T 1in4_A 25 DEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASE--LQTN----IHVTSGPVLVKQG------- 91 (334)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHH--HTCC----EEEEETTTCCSHH-------
T ss_pred HHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHH--hCCC----EEEEechHhcCHH-------
Confidence 4568988777777666653 23467999999999999999999873 3211 1111111100111
Q ss_pred HhcCCCCCCCCChHHHHHHHHHHHHhcCCCcEEEEEeCCCCCChH----HHhhhccC--------C----------CCCE
Q 042541 241 HHKGYPVPEFQTDEAAINDLERFFKQMRIEAILLVLDDVWPGSES----LLQKLGFQ--------L----------PDYK 298 (695)
Q Consensus 241 ~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~~~LlVlDdv~~~~~~----~~~~l~~~--------~----------~gs~ 298 (695)
.+...+..+ .++.++++|++...... +...+... . +...
T Consensus 92 ------------------~l~~~~~~~-~~~~v~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~ 152 (334)
T 1in4_A 92 ------------------DMAAILTSL-ERGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFT 152 (334)
T ss_dssp ------------------HHHHHHHHC-CTTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------CCCE
T ss_pred ------------------HHHHHHHHc-cCCCEEEEcchhhcCHHHHHHHHHHHHhcccceeeccCcccccccccCCCeE
Confidence 111222222 23456778887554322 11111110 0 1122
Q ss_pred EEE-EcCCCC------CCCCCeEecCCCChHHHHHHHHHhccCCCCCCCCCchHHHHHHHHhcCCchhHHHHH
Q 042541 299 ILV-TSRSEF------PQFGSVHYLKPLTYEAARTLFLHSANLQDGNSYIPDENIVSKILRACKGCPLALKVV 364 (695)
Q Consensus 299 iiv-TtR~~~------~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~ 364 (695)
++- |++... ...+....+++.+.++-.+++.+.+..... .-..+.+..|++.++|.|..+..+
T Consensus 153 li~at~~~~~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~~~~---~~~~~~~~~ia~~~~G~~R~a~~l 222 (334)
T 1in4_A 153 LVGATTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMDV---EIEDAAAEMIAKRSRGTPRIAIRL 222 (334)
T ss_dssp EEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTC---CBCHHHHHHHHHTSTTCHHHHHHH
T ss_pred EEEecCCcccCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHHcCC---CcCHHHHHHHHHhcCCChHHHHHH
Confidence 332 333221 122336889999999999999887643221 224678999999999999765443
No 215
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.55 E-value=0.0013 Score=64.76 Aligned_cols=169 Identities=12% Similarity=0.091 Sum_probs=90.5
Q ss_pred CCCCCCcchHHHHHHHHH---cC---------CceEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCCCCCHH
Q 042541 166 VISPGLDVPLKELKMELF---KD---------GRQFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSKNPNVK 233 (695)
Q Consensus 166 ~~~vGr~~~~~~l~~~L~---~~---------~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~~~~~~ 233 (695)
+.++|.+..++++.+.+. .. ..+-+.|+|++|+||||||+.+++. ... ..+.++.+.-.+
T Consensus 12 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~--~~~----~~~~i~~~~~~~-- 83 (257)
T 1lv7_A 12 ADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGE--AKV----PFFTISGSDFVE-- 83 (257)
T ss_dssp GGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHH--HTC----CEEEECSCSSTT--
T ss_pred HHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHH--cCC----CEEEEeHHHHHH--
Confidence 467999887777765443 21 1345889999999999999999873 221 133443332111
Q ss_pred HHHHHHHHhcCCCCCCCCChHHHHHHHHHHH-HhcCCCcEEEEEeCCCCC------------Ch--H----HHhhhcc--
Q 042541 234 AIVQKVLHHKGYPVPEFQTDEAAINDLERFF-KQMRIEAILLVLDDVWPG------------SE--S----LLQKLGF-- 292 (695)
Q Consensus 234 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~-~~l~~~~~LlVlDdv~~~------------~~--~----~~~~l~~-- 292 (695)
... . ... ..+..++ ......+.++++|+++.. .. . ++..+..
T Consensus 84 --------~~~----~--~~~---~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~ 146 (257)
T 1lv7_A 84 --------MFV----G--VGA---SRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFE 146 (257)
T ss_dssp --------SCC----C--CCH---HHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCC
T ss_pred --------Hhh----h--hhH---HHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcc
Confidence 000 0 111 2233334 223456789999998211 00 1 1222221
Q ss_pred CCCCCEEEEEcCCCC------C---CCCCeEecCCCChHHHHHHHHHhccCCCCCCCCCchHHHHHHHHhcCC-chhHHH
Q 042541 293 QLPDYKILVTSRSEF------P---QFGSVHYLKPLTYEAARTLFLHSANLQDGNSYIPDENIVSKILRACKG-CPLALK 362 (695)
Q Consensus 293 ~~~gs~iivTtR~~~------~---~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~G-~PLai~ 362 (695)
...+..||.||.... . .....+.++..+.++-.+++.......... . ......++..+.| .+--|.
T Consensus 147 ~~~~~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l~--~--~~~~~~la~~~~G~~~~dl~ 222 (257)
T 1lv7_A 147 GNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLA--P--DIDAAIIARGTPGFSGADLA 222 (257)
T ss_dssp SSSCEEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBC--T--TCCHHHHHHTCTTCCHHHHH
T ss_pred cCCCEEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCCC--c--cccHHHHHHHcCCCCHHHHH
Confidence 123445666665441 1 122367788888888888887665332111 1 1124567777888 665444
Q ss_pred H
Q 042541 363 V 363 (695)
Q Consensus 363 ~ 363 (695)
.
T Consensus 223 ~ 223 (257)
T 1lv7_A 223 N 223 (257)
T ss_dssp H
T ss_pred H
Confidence 3
No 216
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=97.55 E-value=7.9e-05 Score=74.07 Aligned_cols=44 Identities=18% Similarity=0.130 Sum_probs=34.7
Q ss_pred CCCCCCcchHHHHHHHHH---c---------CCceEEEEEcCCCCcHHHHHHHHhc
Q 042541 166 VISPGLDVPLKELKMELF---K---------DGRQFIVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 166 ~~~vGr~~~~~~l~~~L~---~---------~~~~vv~I~G~gGiGKTtLa~~~~~ 209 (695)
+.++|.+..++.+.+.+. . ...+-+.|+|++|+|||+||+.+++
T Consensus 11 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~ 66 (268)
T 2r62_A 11 KDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAG 66 (268)
T ss_dssp TTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHH
T ss_pred HHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHH
Confidence 468999998888877654 1 1134478999999999999999987
No 217
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.52 E-value=0.00091 Score=75.78 Aligned_cols=164 Identities=10% Similarity=0.112 Sum_probs=97.7
Q ss_pred CCCCCCcchHHHHHHHHH----cC---------CceEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCCCCCH
Q 042541 166 VISPGLDVPLKELKMELF----KD---------GRQFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSKNPNV 232 (695)
Q Consensus 166 ~~~vGr~~~~~~l~~~L~----~~---------~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~~~~~ 232 (695)
+.+.|.++.+++|.+.+. .+ .++-|.++|++|+|||+||+++++ ... ...+.++.++
T Consensus 204 ~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~--elg----~~~~~v~~~~---- 273 (806)
T 3cf2_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN--ETG----AFFFLINGPE---- 273 (806)
T ss_dssp GGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHT--TTT----CEEEEEEHHH----
T ss_pred hhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHH--HhC----CeEEEEEhHH----
Confidence 356889998888887654 11 256799999999999999999998 332 2244554331
Q ss_pred HHHHHHHHHhcCCCCCCCCChHHHHHHHHHHH-HhcCCCcEEEEEeCCCCCC-----------hHHHhhhc----c--CC
Q 042541 233 KAIVQKVLHHKGYPVPEFQTDEAAINDLERFF-KQMRIEAILLVLDDVWPGS-----------ESLLQKLG----F--QL 294 (695)
Q Consensus 233 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~-~~l~~~~~LlVlDdv~~~~-----------~~~~~~l~----~--~~ 294 (695)
++.. ...+....++.++ ......+++|++|+++... ......+. . ..
T Consensus 274 ------l~sk---------~~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~ 338 (806)
T 3cf2_A 274 ------IMSK---------LAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQR 338 (806)
T ss_dssp ------HHSS---------CTTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGG
T ss_pred ------hhcc---------cchHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhccccc
Confidence 1111 1122344566666 4556789999999985432 01122221 1 11
Q ss_pred CCCEEEEEcCCCC------C---CCCCeEecCCCChHHHHHHHHHhccCCCCCCCCCchHHHHHHHHhcCCch
Q 042541 295 PDYKILVTSRSEF------P---QFGSVHYLKPLTYEAARTLFLHSANLQDGNSYIPDENIVSKILRACKGCP 358 (695)
Q Consensus 295 ~gs~iivTtR~~~------~---~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~G~P 358 (695)
.+..||.||.... . .....+.++..+.++-.++|..+........ ......|++.+.|.-
T Consensus 339 ~~V~VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~----dvdl~~lA~~T~Gfs 407 (806)
T 3cf2_A 339 AHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLAD----DVDLEQVANETHGHV 407 (806)
T ss_dssp GCEEEEEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECT----TCCHHHHHHHCCSCC
T ss_pred CCEEEEEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCCc----ccCHHHHHHhcCCCC
Confidence 2334555655441 1 2233788888888888888887653322211 112567888888874
No 218
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.51 E-value=0.00018 Score=73.14 Aligned_cols=61 Identities=15% Similarity=0.208 Sum_probs=43.4
Q ss_pred CCCCCcchHHHHHHHHHcC---------CceEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCCCC
Q 042541 167 ISPGLDVPLKELKMELFKD---------GRQFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSKNP 230 (695)
Q Consensus 167 ~~vGr~~~~~~l~~~L~~~---------~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~~~ 230 (695)
.++|.+..++.+...+... ....+.|+|++|+|||++|+.+++ .....-. .++.++++...
T Consensus 18 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~--~~~~~~~-~~~~~~~~~~~ 87 (311)
T 4fcw_A 18 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAA--TLFDTEE-AMIRIDMTEYM 87 (311)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHH--HHHSCGG-GEEEEEGGGCC
T ss_pred hcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHH--HHcCCCc-ceEEeeccccc
Confidence 4689999999988887732 135899999999999999999987 3322111 25567766543
No 219
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.41 E-value=9.9e-05 Score=65.98 Aligned_cols=58 Identities=21% Similarity=0.206 Sum_probs=35.7
Q ss_pred CCCCCCCcchHHHHHHHHHcCCceEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCC
Q 042541 165 PVISPGLDVPLKELKMELFKDGRQFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSK 228 (695)
Q Consensus 165 ~~~~vGr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~ 228 (695)
..+++|...+ ....|..-....++|+|+.|+|||||++.++.. .... ...+++++..+
T Consensus 17 ~~f~~g~n~~---~~~~l~~~~g~~~~l~G~~G~GKTtL~~~i~~~--~~~~-g~~~~~~~~~~ 74 (149)
T 2kjq_A 17 DKFLGTENAE---LVYVLRHKHGQFIYVWGEEGAGKSHLLQAWVAQ--ALEA-GKNAAYIDAAS 74 (149)
T ss_dssp CCCCSCCTHH---HHHHCCCCCCSEEEEESSSTTTTCHHHHHHHHH--HHTT-TCCEEEEETTT
T ss_pred hhcCcCccHH---HHHHHHhcCCCEEEEECCCCCCHHHHHHHHHHH--HHhc-CCcEEEEcHHH
Confidence 3444554433 233333224578999999999999999999873 2221 11256776554
No 220
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.41 E-value=0.0026 Score=67.91 Aligned_cols=164 Identities=13% Similarity=0.117 Sum_probs=93.4
Q ss_pred CCCCCCcchHHHHHHHHH---cC---------CceEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCCCCCHH
Q 042541 166 VISPGLDVPLKELKMELF---KD---------GRQFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSKNPNVK 233 (695)
Q Consensus 166 ~~~vGr~~~~~~l~~~L~---~~---------~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~~~~~~ 233 (695)
+.++|.++.++++.+.+. .. -.+-|.|+|++|+|||+||+.+++. .. ...+.++.++....
T Consensus 16 ~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~--~~----~~f~~is~~~~~~~- 88 (476)
T 2ce7_A 16 KDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGE--AN----VPFFHISGSDFVEL- 88 (476)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHH--HT----CCEEEEEGGGTTTC-
T ss_pred HHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHH--cC----CCeeeCCHHHHHHH-
Confidence 457999988777766543 21 1345889999999999999999873 22 22345554432210
Q ss_pred HHHHHHHHhcCCCCCCCCChHHHHHHHHHHH-HhcCCCcEEEEEeCCCCCCh--------------H----HHhhhcc--
Q 042541 234 AIVQKVLHHKGYPVPEFQTDEAAINDLERFF-KQMRIEAILLVLDDVWPGSE--------------S----LLQKLGF-- 292 (695)
Q Consensus 234 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~-~~l~~~~~LlVlDdv~~~~~--------------~----~~~~l~~-- 292 (695)
+ .......++.++ ......+.+|++|+++.... . ++..+..
T Consensus 89 ---------~---------~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~ 150 (476)
T 2ce7_A 89 ---------F---------VGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFD 150 (476)
T ss_dssp ---------C---------TTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSC
T ss_pred ---------H---------hcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccC
Confidence 0 001123344444 33356789999999854210 1 1222211
Q ss_pred CCCCCEEEEEcCCCC------CC---CCCeEecCCCChHHHHHHHHHhccCCCCCCCCCchHHHHHHHHhcCCch
Q 042541 293 QLPDYKILVTSRSEF------PQ---FGSVHYLKPLTYEAARTLFLHSANLQDGNSYIPDENIVSKILRACKGCP 358 (695)
Q Consensus 293 ~~~gs~iivTtR~~~------~~---~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~G~P 358 (695)
...+..||.||.... .. ....+.++..+.++-.+++..++...... .. .....|++.+.|..
T Consensus 151 ~~~~viVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~--~~--v~l~~la~~t~G~s 221 (476)
T 2ce7_A 151 SKEGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLA--ED--VNLEIIAKRTPGFV 221 (476)
T ss_dssp GGGTEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBC--TT--CCHHHHHHTCTTCC
T ss_pred CCCCEEEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCc--ch--hhHHHHHHhcCCCc
Confidence 123455666665541 11 22377888888888888887665432211 11 11455888998877
No 221
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.38 E-value=0.00019 Score=70.51 Aligned_cols=87 Identities=22% Similarity=0.347 Sum_probs=62.3
Q ss_pred cCCCCCcEEEEcccCCCCcccCcc-cccccCCCCcEEEeccCCCCCcccccccc--cccEEeeccccCCcccccch---h
Q 042541 571 QKMDELKVLIVTNYGFSPAELNNF-RVLSALSKLKKIRLEHVSLPNSLATVRMN--HLQKVSLVMCNVGQVFRNST---F 644 (695)
Q Consensus 571 ~~l~~Lr~L~l~~~~~~~~~~~~~-~~l~~l~~L~~L~L~~~~l~~lp~i~~l~--~L~~L~l~~~~i~~~~~~~~---~ 644 (695)
.++++|++|+|++|.+.. +..+ ..+..+++|++|+|++|.+..+..++.+. +|++|+|++|++....|... .
T Consensus 167 ~~l~~L~~L~Ls~N~l~~--l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYR--LDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HHCTTCCEEECTTSCCCC--CGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hhCCCCCEEECCCCCCCC--CccchhHHhhCCCCCEEECCCCccCCchhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence 568899999999998743 2222 23568999999999999999776445555 99999999999876443210 0
Q ss_pred hhcccCCCccEEecc
Q 042541 645 RISDAFPNLLEMDID 659 (695)
Q Consensus 645 ~l~~~l~~L~~L~l~ 659 (695)
.+-..+++|+.||-.
T Consensus 245 ~il~~~P~L~~LDg~ 259 (267)
T 3rw6_A 245 AIRERFPKLLRLDGH 259 (267)
T ss_dssp HHHHHCTTCCEESSC
T ss_pred HHHHHCcccCeECCc
Confidence 111178999998754
No 222
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.36 E-value=5.5e-05 Score=70.54 Aligned_cols=115 Identities=13% Similarity=0.133 Sum_probs=79.4
Q ss_pred CCCceEEEEEEcc-Ccc----ccCChhhcCCCCCcEEEEcccCCCCcccCcc-cccccCCCCcEEEeccCCCCC-----c
Q 042541 548 QGPEVKVVVLNIR-TKK----YVLPDFLQKMDELKVLIVTNYGFSPAELNNF-RVLSALSKLKKIRLEHVSLPN-----S 616 (695)
Q Consensus 548 ~~~~l~~L~l~~~-~~~----~~~p~~~~~l~~Lr~L~l~~~~~~~~~~~~~-~~l~~l~~L~~L~L~~~~l~~-----l 616 (695)
..+.|+.|.|+.+ ... ..+...+...++|++|+|++|.+.......+ ..+...++|++|+|++|.+.. +
T Consensus 34 ~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l 113 (185)
T 1io0_A 34 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILAL 113 (185)
T ss_dssp TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHH
T ss_pred cCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHH
Confidence 3566777877766 433 2355667788999999999998754332221 235566889999999999973 4
Q ss_pred c-cccccccccEEee--ccccCCcccccchhhhcccCCCccEEeccccc
Q 042541 617 L-ATVRMNHLQKVSL--VMCNVGQVFRNSTFRISDAFPNLLEMDIDYCN 662 (695)
Q Consensus 617 p-~i~~l~~L~~L~l--~~~~i~~~~~~~~~~l~~~l~~L~~L~l~~c~ 662 (695)
. .+...++|++|+| ++|.++..-...+...-...++|+.|+|++|.
T Consensus 114 ~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 114 VEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp HHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred HHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence 5 7777889999999 88988753211111111156899999999874
No 223
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=97.28 E-value=0.0025 Score=63.95 Aligned_cols=23 Identities=13% Similarity=0.164 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhc
Q 042541 187 RQFIVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 187 ~~vv~I~G~gGiGKTtLa~~~~~ 209 (695)
++.+.++|++|+|||+||+.+++
T Consensus 36 p~~lLl~GppGtGKT~la~aiA~ 58 (293)
T 3t15_A 36 PLILGIWGGKGQGKSFQCELVFR 58 (293)
T ss_dssp CSEEEEEECTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46788999999999999999998
No 224
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=97.22 E-value=0.0018 Score=68.12 Aligned_cols=87 Identities=3% Similarity=0.015 Sum_probs=60.8
Q ss_pred cccCCCCcEEEeccCCCC-----Ccc--cccccccccEEeeccccCCcccccchhhhcccCCCccEEecccccccccCch
Q 042541 597 LSALSKLKKIRLEHVSLP-----NSL--ATVRMNHLQKVSLVMCNVGQVFRNSTFRISDAFPNLLEMDIDYCNDLIELPD 669 (695)
Q Consensus 597 l~~l~~L~~L~L~~~~l~-----~lp--~i~~l~~L~~L~l~~~~i~~~~~~~~~~l~~~l~~L~~L~l~~c~~l~~lP~ 669 (695)
+..+.+|+.+.+.++.+. .++ .+.++.+|+.+.|. +.++.+....+. .+++|+.+.|.. ++..++.
T Consensus 267 F~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~----~c~~L~~l~lp~--~l~~I~~ 339 (401)
T 4fdw_A 267 FYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLG----GNRKVTQLTIPA--NVTQINF 339 (401)
T ss_dssp TTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTT----TCCSCCEEEECT--TCCEECT
T ss_pred hhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhc----CCCCccEEEECc--cccEEcH
Confidence 566777888888776554 465 67778888888887 347777777765 778888888864 3666654
Q ss_pred h-hcCCCCCceeecccccCCCCCC
Q 042541 670 G-LCDIVSMEKLRITNCHRLSALP 692 (695)
Q Consensus 670 ~-i~~L~~L~~L~l~~~~~l~~lP 692 (695)
+ |.++ +|+.|++.+|. +..++
T Consensus 340 ~aF~~~-~L~~l~l~~n~-~~~l~ 361 (401)
T 4fdw_A 340 SAFNNT-GIKEVKVEGTT-PPQVF 361 (401)
T ss_dssp TSSSSS-CCCEEEECCSS-CCBCC
T ss_pred HhCCCC-CCCEEEEcCCC-Ccccc
Confidence 4 6677 88888888754 44444
No 225
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.11 E-value=0.0037 Score=68.47 Aligned_cols=44 Identities=23% Similarity=0.299 Sum_probs=34.4
Q ss_pred CCCCCCcchHHHHHHHHH------cCCceEEEEEcCCCCcHHHHHHHHhc
Q 042541 166 VISPGLDVPLKELKMELF------KDGRQFIVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 166 ~~~vGr~~~~~~l~~~L~------~~~~~vv~I~G~gGiGKTtLa~~~~~ 209 (695)
..++|.+...+.+.+.+. ......+.|+|++|+||||||+.++.
T Consensus 81 ~di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~ 130 (543)
T 3m6a_A 81 EEHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAK 130 (543)
T ss_dssp HHCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHH
Confidence 346888887777765544 12356899999999999999999987
No 226
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=97.09 E-value=0.002 Score=65.02 Aligned_cols=43 Identities=16% Similarity=0.224 Sum_probs=36.5
Q ss_pred CCCCCcchHHHHHHHHH--cCCceEEEEEcCCCCcHHHHHHHHhc
Q 042541 167 ISPGLDVPLKELKMELF--KDGRQFIVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 167 ~~vGr~~~~~~l~~~L~--~~~~~vv~I~G~gGiGKTtLa~~~~~ 209 (695)
.++|++..++++.+.+. ......|.|+|.+|+|||++|+.+++
T Consensus 3 ~iig~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~ 47 (304)
T 1ojl_A 3 HMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHA 47 (304)
T ss_dssp CCCCCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHH
T ss_pred CcEECCHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHH
Confidence 57999999999988876 23445678999999999999999987
No 227
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=97.09 E-value=0.008 Score=64.43 Aligned_cols=45 Identities=16% Similarity=0.214 Sum_probs=34.9
Q ss_pred CCCCCCcchHHHHHHHHH---cCC--ceEEEEEcCCCCcHHHHHHHHhcc
Q 042541 166 VISPGLDVPLKELKMELF---KDG--RQFIVVSAPGGYGKTTLVQRLCKD 210 (695)
Q Consensus 166 ~~~vGr~~~~~~l~~~L~---~~~--~~vv~I~G~gGiGKTtLa~~~~~~ 210 (695)
+.++|.++.++.+..++. .+. .+-+.++|++|+|||++|+.+++.
T Consensus 37 ~~iiG~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~ 86 (456)
T 2c9o_A 37 SGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQE 86 (456)
T ss_dssp TTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHHH
Confidence 568999988776655443 332 357889999999999999999873
No 228
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=96.99 E-value=0.0023 Score=73.52 Aligned_cols=141 Identities=14% Similarity=0.170 Sum_probs=79.9
Q ss_pred CCCCCCcchHHHHHHHHHcC---------CceEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCCCCCHHHHH
Q 042541 166 VISPGLDVPLKELKMELFKD---------GRQFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSKNPNVKAIV 236 (695)
Q Consensus 166 ~~~vGr~~~~~~l~~~L~~~---------~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~~~~~~~~~ 236 (695)
..++|.+..++.+...+... ....+.++|++|+|||++|+.+++ .....-.. .+.++++........
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~--~l~~~~~~-~i~i~~s~~~~~~~~- 566 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAE--SIFGDEES-MIRIDMSEYMEKHST- 566 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHH--HHHSCTTC-EEEEEGGGGCSSCCC-
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHH--HhcCCCcc-eEEEechhccccccc-
Confidence 45799999999988887721 123699999999999999999987 33222122 556766543210000
Q ss_pred HHHHHhcCCCCCCCCChHHHHHHHHHHHHhcCCCcEEEEEeCCCCCChHHH----hhhcc-----------CCCCCEEEE
Q 042541 237 QKVLHHKGYPVPEFQTDEAAINDLERFFKQMRIEAILLVLDDVWPGSESLL----QKLGF-----------QLPDYKILV 301 (695)
Q Consensus 237 ~~i~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~~~LlVlDdv~~~~~~~~----~~l~~-----------~~~gs~iiv 301 (695)
. ...+...++ .....+|+||++........ ..+.. ...+..||+
T Consensus 567 ---------------~----~~~l~~~~~--~~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ 625 (758)
T 3pxi_A 567 ---------------S----GGQLTEKVR--RKPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIM 625 (758)
T ss_dssp ---------------C-------CHHHHH--HCSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEE
T ss_pred ---------------c----cchhhHHHH--hCCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEE
Confidence 0 001111111 13345999999987765422 22221 113568888
Q ss_pred EcCCCC-------------------CCCCCeEecCCCChHHHHHHHHHh
Q 042541 302 TSRSEF-------------------PQFGSVHYLKPLTYEAARTLFLHS 331 (695)
Q Consensus 302 TtR~~~-------------------~~~~~~~~l~~L~~~ea~~Lf~~~ 331 (695)
||.... ......+.+.+++.++-..++...
T Consensus 626 ttn~~~~~~~~~~~~~~~~f~p~l~~Rl~~~i~~~~l~~~~~~~i~~~~ 674 (758)
T 3pxi_A 626 TSNVGASEKDKVMGELKRAFRPEFINRIDEIIVFHSLEKKHLTEIVSLM 674 (758)
T ss_dssp EESSSTTCCHHHHHHHHHHSCHHHHTTSSEEEECC--CHHHHHHHHHHH
T ss_pred eCCCChhhHHHHHHHHHhhCCHHHHhhCCeEEecCCCCHHHHHHHHHHH
Confidence 887421 112236677777777666666543
No 229
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.92 E-value=0.0071 Score=69.52 Aligned_cols=164 Identities=11% Similarity=0.118 Sum_probs=91.6
Q ss_pred CCCCCCcchHHHHHHHHHc-------------CCceEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCCCCCH
Q 042541 166 VISPGLDVPLKELKMELFK-------------DGRQFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSKNPNV 232 (695)
Q Consensus 166 ~~~vGr~~~~~~l~~~L~~-------------~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~~~~~ 232 (695)
+.++|.+..+++|.+++.. .....|.|+|++|+||||||+.++. ..... .+.++.+.
T Consensus 204 ~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~--~l~~~----~i~v~~~~---- 273 (806)
T 1ypw_A 204 DDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN--ETGAF----FFLINGPE---- 273 (806)
T ss_dssp GGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHH--TTTCE----EEEEEHHH----
T ss_pred HHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHH--HcCCc----EEEEEchH----
Confidence 4579999999999888752 2346799999999999999999987 33222 23443211
Q ss_pred HHHHHHHHHhcCCCCCCCCChHHHHHHHHHHH-HhcCCCcEEEEEeCCCCCC--------h-------HHHhhhccC--C
Q 042541 233 KAIVQKVLHHKGYPVPEFQTDEAAINDLERFF-KQMRIEAILLVLDDVWPGS--------E-------SLLQKLGFQ--L 294 (695)
Q Consensus 233 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~-~~l~~~~~LlVlDdv~~~~--------~-------~~~~~l~~~--~ 294 (695)
+. + . ........+..++ ......+.++++|++.... + .++..+... .
T Consensus 274 ------l~---~-~-----~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~~ 338 (806)
T 1ypw_A 274 ------IM---S-K-----LAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQR 338 (806)
T ss_dssp ------HS---S-S-----STTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCTT
T ss_pred ------hh---h-h-----hhhhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhccc
Confidence 10 0 0 0111223344444 2223567899999984321 1 011212111 1
Q ss_pred CCCEEEEEcCCCC------C---CCCCeEecCCCChHHHHHHHHHhccCCCCCCCCCchHHHHHHHHhcCCch
Q 042541 295 PDYKILVTSRSEF------P---QFGSVHYLKPLTYEAARTLFLHSANLQDGNSYIPDENIVSKILRACKGCP 358 (695)
Q Consensus 295 ~gs~iivTtR~~~------~---~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~G~P 358 (695)
.+..+|.||.... . .....+.+...+.++-.+++...+......... ...+++..+.|.-
T Consensus 339 ~~v~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~~~~l~~~~----~l~~la~~t~g~~ 407 (806)
T 1ypw_A 339 AHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDV----DLEQVANETHGHV 407 (806)
T ss_dssp SCCEEEEECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTTTTSCCCTTC----CTHHHHHSCSSCC
T ss_pred ccEEEecccCCchhcCHHHhcccccccccccCCCCHHHHHHHHHHHHhcCCCcccc----hhHHHHHhhcCcc
Confidence 2345666665531 1 122357788888999999988765432221111 1345666666653
No 230
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.84 E-value=0.00063 Score=68.83 Aligned_cols=51 Identities=10% Similarity=0.070 Sum_probs=33.5
Q ss_pred hHHHHHHHHHcC---CceEEEEEcCCCCcHHHHHHHHhcccccc-ccCCCcEEEEEeC
Q 042541 174 PLKELKMELFKD---GRQFIVVSAPGGYGKTTLVQRLCKDDQVQ-GKFKDDIFYVTVS 227 (695)
Q Consensus 174 ~~~~l~~~L~~~---~~~vv~I~G~gGiGKTtLa~~~~~~~~~~-~~f~~~~~wv~~~ 227 (695)
..+.+.+++... ....+.|+|++|+|||+||..+++. .. ..- ..+.+++++
T Consensus 136 ~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~--~~~~~g-~~v~~~~~~ 190 (308)
T 2qgz_A 136 AFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHE--LSEKKG-VSTTLLHFP 190 (308)
T ss_dssp HHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHH--HHHHSC-CCEEEEEHH
T ss_pred HHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHH--HHHhcC-CcEEEEEHH
Confidence 344455555532 2478899999999999999999983 33 221 225566654
No 231
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=96.77 E-value=0.034 Score=59.69 Aligned_cols=165 Identities=12% Similarity=0.094 Sum_probs=91.1
Q ss_pred CCCCCCCcchHHHHHHHHH---cC---------CceEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCCCCCH
Q 042541 165 PVISPGLDVPLKELKMELF---KD---------GRQFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSKNPNV 232 (695)
Q Consensus 165 ~~~~vGr~~~~~~l~~~L~---~~---------~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~~~~~ 232 (695)
-+.++|.++.++++.+... .. -.+-|.|+|++|+||||||+.++.. .. ...+.++.+.-..
T Consensus 30 f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~--~~----~~~i~i~g~~~~~- 102 (499)
T 2dhr_A 30 FKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGE--AR----VPFITASGSDFVE- 102 (499)
T ss_dssp TTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHH--TT----CCEEEEEGGGGTS-
T ss_pred HHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHH--hC----CCEEEEehhHHHH-
Confidence 3467999987777665543 21 1234899999999999999999873 22 2244555443110
Q ss_pred HHHHHHHHHhcCCCCCCCCChHHHHHHHHHHHHhc-CCCcEEEEEeCCCCCC-----------h-------HHHhhhccC
Q 042541 233 KAIVQKVLHHKGYPVPEFQTDEAAINDLERFFKQM-RIEAILLVLDDVWPGS-----------E-------SLLQKLGFQ 293 (695)
Q Consensus 233 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~~l-~~~~~LlVlDdv~~~~-----------~-------~~~~~l~~~ 293 (695)
. ........+..+++.. ...+.++++|+++... + .++..+...
T Consensus 103 -------------~-----~~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~ 164 (499)
T 2dhr_A 103 -------------M-----FVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGF 164 (499)
T ss_dssp -------------S-----CTTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGC
T ss_pred -------------h-----hhhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhccc
Confidence 0 0011122334444332 2356899999984321 1 122222211
Q ss_pred CC--CCEEEEEcCCCC------C---CCCCeEecCCCChHHHHHHHHHhccCCCCCCCCCchHHHHHHHHhcCCch
Q 042541 294 LP--DYKILVTSRSEF------P---QFGSVHYLKPLTYEAARTLFLHSANLQDGNSYIPDENIVSKILRACKGCP 358 (695)
Q Consensus 294 ~~--gs~iivTtR~~~------~---~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~G~P 358 (695)
.. +..++.||.... . .....+.++..+.++-.+++..++..... ........|+..+.|+.
T Consensus 165 ~~~~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~l----~~dv~l~~lA~~t~G~~ 236 (499)
T 2dhr_A 165 EKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPL----AEDVDLALLAKRTPGFV 236 (499)
T ss_dssp CSSCCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSCC----CCSSTTHHHHTTSCSCC
T ss_pred ccCccEEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHhcCCC----ChHHHHHHHHHhcCCCC
Confidence 11 234444554431 1 23347888888988888888876532211 11122556888888875
No 232
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.76 E-value=0.05 Score=53.83 Aligned_cols=165 Identities=12% Similarity=0.104 Sum_probs=86.7
Q ss_pred CCCCCCCcchHHHHHHHHH---cC---------CceEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCCCCCH
Q 042541 165 PVISPGLDVPLKELKMELF---KD---------GRQFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSKNPNV 232 (695)
Q Consensus 165 ~~~~vGr~~~~~~l~~~L~---~~---------~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~~~~~ 232 (695)
-+.++|.+..++++.+... .. -.+-+.|+|++|+|||||++.++.. .. .+.+.++..
T Consensus 39 ~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~--~~----~~~i~~~~~----- 107 (278)
T 1iy2_A 39 FKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGE--AR----VPFITASGS----- 107 (278)
T ss_dssp GGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHH--TT----CCEEEEEHH-----
T ss_pred HHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHH--cC----CCEEEecHH-----
Confidence 3567898887766655433 10 0123899999999999999999873 32 223344322
Q ss_pred HHHHHHHHHhcCCCCCCCCChHHHHHHHHHHHHhc-CCCcEEEEEeCCCCC-----------Ch---H----HHhhhccC
Q 042541 233 KAIVQKVLHHKGYPVPEFQTDEAAINDLERFFKQM-RIEAILLVLDDVWPG-----------SE---S----LLQKLGFQ 293 (695)
Q Consensus 233 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~~l-~~~~~LlVlDdv~~~-----------~~---~----~~~~l~~~ 293 (695)
++ ..... ......+..+++.. ...+.++++||+... .. . ++..+...
T Consensus 108 -~~----~~~~~---------~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg 173 (278)
T 1iy2_A 108 -DF----VEMFV---------GVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGF 173 (278)
T ss_dssp -HH----HHSTT---------THHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTC
T ss_pred -HH----HHHHh---------hHHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCC
Confidence 11 11110 01122333444322 345789999998311 11 1 12222211
Q ss_pred CC-CC-EEEEEcCCCC---------CCCCCeEecCCCChHHHHHHHHHhccCCCCCCCCCchHHHHHHHHhcCCch
Q 042541 294 LP-DY-KILVTSRSEF---------PQFGSVHYLKPLTYEAARTLFLHSANLQDGNSYIPDENIVSKILRACKGCP 358 (695)
Q Consensus 294 ~~-gs-~iivTtR~~~---------~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~G~P 358 (695)
.. .. .++.||.... ......+.++..+.++-.+++...+...... .......+++.+.|..
T Consensus 174 ~~~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~----~~~~~~~la~~~~G~~ 245 (278)
T 1iy2_A 174 EKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLA----EDVDLALLAKRTPGFV 245 (278)
T ss_dssp CTTCCEEEEEEESCTTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSCBC----TTCCHHHHHHTCTTCC
T ss_pred CCCCCEEEEEecCCchhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHccCCCC----cccCHHHHHHHcCCCC
Confidence 11 12 3333444431 1234478888888888888887665322111 1112456777777754
No 233
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.73 E-value=0.0053 Score=58.47 Aligned_cols=44 Identities=23% Similarity=0.185 Sum_probs=33.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCCCCCHHHHH
Q 042541 187 RQFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSKNPNVKAIV 236 (695)
Q Consensus 187 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~~~~~~~~~ 236 (695)
..++.|+|++|+|||||+..++. . -...++|++.....+...+.
T Consensus 20 G~~~~i~G~~GsGKTtl~~~l~~----~--~~~~v~~i~~~~~~~~~~~~ 63 (220)
T 2cvh_A 20 GVLTQVYGPYASGKTTLALQTGL----L--SGKKVAYVDTEGGFSPERLV 63 (220)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHH----H--HCSEEEEEESSCCCCHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH----H--cCCcEEEEECCCCCCHHHHH
Confidence 47999999999999999999886 1 12347899887766665544
No 234
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=96.64 E-value=0.0038 Score=71.76 Aligned_cols=106 Identities=15% Similarity=0.164 Sum_probs=60.7
Q ss_pred CCCCCCcchHHHHHHHHHc---------CCceEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCCCCCHHHHH
Q 042541 166 VISPGLDVPLKELKMELFK---------DGRQFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSKNPNVKAIV 236 (695)
Q Consensus 166 ~~~vGr~~~~~~l~~~L~~---------~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~~~~~~~~~ 236 (695)
..++|.+..++.+...+.. .....+.++|++|+|||++|+.+++ .. ....+.++++.......
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~--~l----~~~~~~i~~s~~~~~~~-- 529 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSK--AL----GIELLRFDMSEYMERHT-- 529 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHH--HH----TCEEEEEEGGGCSSSSC--
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHH--Hh----cCCEEEEechhhcchhh--
Confidence 4578999998888877761 1134799999999999999999987 33 22245666654322100
Q ss_pred HHHHHhcCCCCCCCCChHHHHHHHHHHHHhcCCCcEEEEEeCCCCCChH
Q 042541 237 QKVLHHKGYPVPEFQTDEAAINDLERFFKQMRIEAILLVLDDVWPGSES 285 (695)
Q Consensus 237 ~~i~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~~~LlVlDdv~~~~~~ 285 (695)
...+-+..+.. ...+....+...++ +....+|+||++......
T Consensus 530 ---~~~l~g~~~g~-~g~~~~~~l~~~~~--~~~~~vl~lDEi~~~~~~ 572 (758)
T 1r6b_X 530 ---VSRLIGAPPGY-VGFDQGGLLTDAVI--KHPHAVLLLDEIEKAHPD 572 (758)
T ss_dssp ---CSSSCCCCSCS-HHHHHTTHHHHHHH--HCSSEEEEEETGGGSCHH
T ss_pred ---HhhhcCCCCCC-cCccccchHHHHHH--hCCCcEEEEeCccccCHH
Confidence 00111111111 11111112222232 244689999999877654
No 235
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=96.54 E-value=0.015 Score=61.19 Aligned_cols=126 Identities=10% Similarity=0.018 Sum_probs=89.4
Q ss_pred CceEEEEEEccCccccC-ChhhcCCCCCcEEEEcccCCCCccc--CcccccccCCCCcEEEeccCCCCCcc--ccccccc
Q 042541 550 PEVKVVVLNIRTKKYVL-PDFLQKMDELKVLIVTNYGFSPAEL--NNFRVLSALSKLKKIRLEHVSLPNSL--ATVRMNH 624 (695)
Q Consensus 550 ~~l~~L~l~~~~~~~~~-p~~~~~l~~Lr~L~l~~~~~~~~~~--~~~~~l~~l~~L~~L~L~~~~l~~lp--~i~~l~~ 624 (695)
.+|+.+.+..+ ...+ +..|.++++|+.+.+.++....... -....+..|.+|+.+.|. +++..++ .+.++.+
T Consensus 248 ~~L~~i~lp~~--i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~ 324 (401)
T 4fdw_A 248 SGITTVKLPNG--VTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRK 324 (401)
T ss_dssp CCCSEEEEETT--CCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCS
T ss_pred CCccEEEeCCC--ccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCC
Confidence 56777777432 2233 3478899999999998765431111 111237789999999998 4688888 8889999
Q ss_pred ccEEeeccccCCcccccchhhhcccCCCccEEecccccccccCch-hhcCCC-CCceeecccc
Q 042541 625 LQKVSLVMCNVGQVFRNSTFRISDAFPNLLEMDIDYCNDLIELPD-GLCDIV-SMEKLRITNC 685 (695)
Q Consensus 625 L~~L~l~~~~i~~~~~~~~~~l~~~l~~L~~L~l~~c~~l~~lP~-~i~~L~-~L~~L~l~~~ 685 (695)
|+.+.|..+ ++.+.+..|. .+ +|+.+++.++. +..++. .+..++ +++.|++..+
T Consensus 325 L~~l~lp~~-l~~I~~~aF~----~~-~L~~l~l~~n~-~~~l~~~~F~~~~~~l~~l~vp~~ 380 (401)
T 4fdw_A 325 VTQLTIPAN-VTQINFSAFN----NT-GIKEVKVEGTT-PPQVFEKVWYGFPDDITVIRVPAE 380 (401)
T ss_dssp CCEEEECTT-CCEECTTSSS----SS-CCCEEEECCSS-CCBCCCSSCCCSCTTCCEEEECGG
T ss_pred ccEEEECcc-ccEEcHHhCC----CC-CCCEEEEcCCC-CcccccccccCCCCCccEEEeCHH
Confidence 999999554 7777777776 78 99999999864 445543 356664 7888888763
No 236
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=96.52 E-value=0.015 Score=59.56 Aligned_cols=58 Identities=16% Similarity=0.184 Sum_probs=40.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcccccccc---CCCcEEEEEeCCCCCHHHHHHHHHHhcCC
Q 042541 187 RQFIVVSAPGGYGKTTLVQRLCKDDQVQGK---FKDDIFYVTVSKNPNVKAIVQKVLHHKGY 245 (695)
Q Consensus 187 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~---f~~~~~wv~~~~~~~~~~~~~~i~~~l~~ 245 (695)
..++.|+|.+|+||||||..++........ -...++|++....++...+.. ++..++.
T Consensus 122 G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~-~~~~~g~ 182 (343)
T 1v5w_A 122 MAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRD-IADRFNV 182 (343)
T ss_dssp SEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHH-HHHHTTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHH-HHHHcCC
Confidence 579999999999999999988763222111 234588999988877766544 3444443
No 237
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=96.46 E-value=0.0074 Score=61.44 Aligned_cols=58 Identities=19% Similarity=0.230 Sum_probs=40.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcccccccc---CCCcEEEEEeCCCCCHHHHHHHHHHhcCC
Q 042541 187 RQFIVVSAPGGYGKTTLVQRLCKDDQVQGK---FKDDIFYVTVSKNPNVKAIVQKVLHHKGY 245 (695)
Q Consensus 187 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~---f~~~~~wv~~~~~~~~~~~~~~i~~~l~~ 245 (695)
..++.|+|.+|+||||||..++........ ....++|++....++...+.. +++.++.
T Consensus 107 G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~-~~~~~g~ 167 (324)
T 2z43_A 107 RTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIEN-MAKALGL 167 (324)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHH-HHHHTTC
T ss_pred CcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHH-HHHHhCC
Confidence 479999999999999999988763221111 134588999988877766653 3455543
No 238
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.43 E-value=0.0076 Score=58.35 Aligned_cols=58 Identities=14% Similarity=0.105 Sum_probs=38.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhccccccc---cCCCcEEEEEeCCCCCHHHHHHHHHHhcCC
Q 042541 187 RQFIVVSAPGGYGKTTLVQRLCKDDQVQG---KFKDDIFYVTVSKNPNVKAIVQKVLHHKGY 245 (695)
Q Consensus 187 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~~---~f~~~~~wv~~~~~~~~~~~~~~i~~~l~~ 245 (695)
..++.|+|++|+|||||+..++....... ....+++|++....++...+. ++++.++.
T Consensus 24 G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~-~~~~~~g~ 84 (243)
T 1n0w_A 24 GSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLL-AVAERYGL 84 (243)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHH-HHHHHTTC
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHH-HHHHHcCC
Confidence 47999999999999999998876311111 013458899887765555443 34444443
No 239
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=96.34 E-value=0.0067 Score=56.05 Aligned_cols=118 Identities=18% Similarity=0.144 Sum_probs=62.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCCC---CCHHHHHHHHHH---hcCCCCC-CCCCh----HH
Q 042541 187 RQFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSKN---PNVKAIVQKVLH---HKGYPVP-EFQTD----EA 255 (695)
Q Consensus 187 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~~---~~~~~~~~~i~~---~l~~~~~-~~~~~----~~ 255 (695)
...|.|++..|.||||+|-...- +...+ ..+|..+.+-.. .....++..+.- ..+.... ..... ..
T Consensus 28 ~g~i~v~tG~GkGKTTaA~Glal--RA~g~-G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~ 104 (196)
T 1g5t_A 28 RGIIIVFTGNGKGKTTAAFGTAA--RAVGH-GKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAA 104 (196)
T ss_dssp CCCEEEEESSSSCHHHHHHHHHH--HHHHT-TCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH--HHHHC-CCeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHH
Confidence 35677777777999999987765 33333 223667765442 234444444310 0111000 01111 11
Q ss_pred HHHHHHHHHHhcCC-CcEEEEEeCCCC------CC-hHHHhhhccCCCCCEEEEEcCCCC
Q 042541 256 AINDLERFFKQMRI-EAILLVLDDVWP------GS-ESLLQKLGFQLPDYKILVTSRSEF 307 (695)
Q Consensus 256 ~~~~l~~~~~~l~~-~~~LlVlDdv~~------~~-~~~~~~l~~~~~gs~iivTtR~~~ 307 (695)
....+....+.+.+ +-=|||||++.. .. +.+++.+.....+..||+|+|...
T Consensus 105 a~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~ap 164 (196)
T 1g5t_A 105 CMAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGCH 164 (196)
T ss_dssp HHHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSCC
T ss_pred HHHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCCc
Confidence 22233333345544 445999999721 11 335555555556789999999873
No 240
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.30 E-value=0.0033 Score=62.82 Aligned_cols=34 Identities=32% Similarity=0.357 Sum_probs=26.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEe
Q 042541 187 RQFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTV 226 (695)
Q Consensus 187 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~ 226 (695)
.+++.|+|++|+|||+||.+++.. ... .++|+++
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~----~G~--~VlyIs~ 156 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEA----LGG--KDKYATV 156 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHH----HHT--TSCCEEE
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh----CCC--CEEEEEe
Confidence 467889999999999999999873 112 2558887
No 241
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.30 E-value=0.013 Score=58.04 Aligned_cols=43 Identities=23% Similarity=0.314 Sum_probs=31.3
Q ss_pred CCCCCcchHHHHHHHHH----c---------CCceEEEEEcCCCCcHHHHHHHHhc
Q 042541 167 ISPGLDVPLKELKMELF----K---------DGRQFIVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 167 ~~vGr~~~~~~l~~~L~----~---------~~~~vv~I~G~gGiGKTtLa~~~~~ 209 (695)
.+.|.++.+++|.+.+. . .-.+=+.|+|++|+||||||+.++.
T Consensus 11 di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~ 66 (274)
T 2x8a_A 11 DIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVAN 66 (274)
T ss_dssp -CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHH
Confidence 45777777777766542 1 1122399999999999999999987
No 242
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=96.29 E-value=0.0089 Score=60.82 Aligned_cols=58 Identities=19% Similarity=0.241 Sum_probs=40.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhccccccc---------cCC----CcEEEEEeCCCCCHHHHHHHHHHhcCC
Q 042541 187 RQFIVVSAPGGYGKTTLVQRLCKDDQVQG---------KFK----DDIFYVTVSKNPNVKAIVQKVLHHKGY 245 (695)
Q Consensus 187 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~~---------~f~----~~~~wv~~~~~~~~~~~~~~i~~~l~~ 245 (695)
..++.|+|.+|+|||+||..++....... ... ..++|++....++...+... ++.++.
T Consensus 98 g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~~-~~~~g~ 168 (322)
T 2i1q_A 98 QSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQM-AEHAGI 168 (322)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHHH-HHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHHH-HHHcCC
Confidence 57999999999999999998876322211 111 45889999988777766543 445543
No 243
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=96.23 E-value=0.0054 Score=60.46 Aligned_cols=60 Identities=12% Similarity=0.040 Sum_probs=40.4
Q ss_pred CCCCCcchHHHHHHHHH--cCCceEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCCC
Q 042541 167 ISPGLDVPLKELKMELF--KDGRQFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSKN 229 (695)
Q Consensus 167 ~~vGr~~~~~~l~~~L~--~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~~ 229 (695)
.++|.+..+.++.+.+. ......|.|+|.+|+|||++|+.+++. .... ....+.++++..
T Consensus 7 ~~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~--~~~~-~~~~~~v~~~~~ 68 (265)
T 2bjv_A 7 NLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYL--SSRW-QGPFISLNCAAL 68 (265)
T ss_dssp ---CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHT--STTT-TSCEEEEEGGGS
T ss_pred cceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHh--cCcc-CCCeEEEecCCC
Confidence 47999999998887765 233456789999999999999999873 2211 112446666654
No 244
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.19 E-value=0.015 Score=59.58 Aligned_cols=86 Identities=15% Similarity=0.141 Sum_probs=53.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCCCCCHHHHHHHHHHhcCCCCCC-----CCChHHHHHHHH
Q 042541 187 RQFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSKNPNVKAIVQKVLHHKGYPVPE-----FQTDEAAINDLE 261 (695)
Q Consensus 187 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~~~~~l~ 261 (695)
..++.|+|++|+||||||..++.. .... ...++|++....++.. .+++++..... ....++....+.
T Consensus 61 G~i~~I~GppGsGKSTLal~la~~--~~~~-gg~VlyId~E~s~~~~-----ra~rlgv~~~~l~i~~~~~~e~~l~~~~ 132 (356)
T 3hr8_A 61 GRIVEIFGQESSGKTTLALHAIAE--AQKM-GGVAAFIDAEHALDPV-----YAKNLGVDLKSLLISQPDHGEQALEIVD 132 (356)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHH--HHHT-TCCEEEEESSCCCCHH-----HHHHHTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH--HHhc-CCeEEEEecccccchH-----HHHHcCCchhhhhhhhccCHHHHHHHHH
Confidence 479999999999999999998863 2221 2237899888777654 34444433211 122333333333
Q ss_pred HHHHhcCCCcEEEEEeCCCCC
Q 042541 262 RFFKQMRIEAILLVLDDVWPG 282 (695)
Q Consensus 262 ~~~~~l~~~~~LlVlDdv~~~ 282 (695)
.+++ ..+.-++|+|.+...
T Consensus 133 ~l~~--~~~~dlvVIDSi~~l 151 (356)
T 3hr8_A 133 ELVR--SGVVDLIVVDSVAAL 151 (356)
T ss_dssp HHHH--TSCCSEEEEECTTTC
T ss_pred HHhh--hcCCCeEEehHhhhh
Confidence 3332 245668999997543
No 245
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=96.18 E-value=0.014 Score=58.02 Aligned_cols=87 Identities=11% Similarity=0.158 Sum_probs=54.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhccccccccC-CCcEEEEEeCCCCCHHHHHHHHHHhcCCCCCCC-----CChHHH-HHHH
Q 042541 188 QFIVVSAPGGYGKTTLVQRLCKDDQVQGKF-KDDIFYVTVSKNPNVKAIVQKVLHHKGYPVPEF-----QTDEAA-INDL 260 (695)
Q Consensus 188 ~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f-~~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~-----~~~~~~-~~~l 260 (695)
.++-|.|++|+|||||+.+++. .....+ ...++|++..+.++.. .+++++...... .+.++. .. +
T Consensus 29 GiteI~G~pGsGKTtL~Lq~~~--~~~~~g~g~~vlyId~E~s~~~~-----ra~~lGvd~d~llv~~~~~~E~~~l~-i 100 (333)
T 3io5_A 29 GLLILAGPSKSFKSNFGLTMVS--SYMRQYPDAVCLFYDSEFGITPA-----YLRSMGVDPERVIHTPVQSLEQLRID-M 100 (333)
T ss_dssp EEEEEEESSSSSHHHHHHHHHH--HHHHHCTTCEEEEEESSCCCCHH-----HHHHTTCCGGGEEEEECSBHHHHHHH-H
T ss_pred CeEEEECCCCCCHHHHHHHHHH--HHHhcCCCceEEEEeccchhhHH-----HHHHhCCCHHHeEEEcCCCHHHHHHH-H
Confidence 4789999999999999988876 333322 3458899998888764 366676543211 122222 22 1
Q ss_pred HHHHHhc-CCCcEEEEEeCCCCC
Q 042541 261 ERFFKQM-RIEAILLVLDDVWPG 282 (695)
Q Consensus 261 ~~~~~~l-~~~~~LlVlDdv~~~ 282 (695)
.+.+..+ .++.-++|+|-+...
T Consensus 101 ~~~l~~i~~~~~~lvVIDSI~aL 123 (333)
T 3io5_A 101 VNQLDAIERGEKVVVFIDSLGNL 123 (333)
T ss_dssp HHHHHTCCTTCCEEEEEECSTTC
T ss_pred HHHHHHhhccCceEEEEeccccc
Confidence 1222212 467889999998543
No 246
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.09 E-value=0.0024 Score=60.86 Aligned_cols=111 Identities=11% Similarity=0.136 Sum_probs=61.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCCCCCHHHHHHHHHHhcCCCCCCCCChHHHHHHHHHHH-
Q 042541 186 GRQFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSKNPNVKAIVQKVLHHKGYPVPEFQTDEAAINDLERFF- 264 (695)
Q Consensus 186 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~- 264 (695)
...++.|+|..|+||||++..+++ +...+-.. ++.+....... ....+.+.++...+... .. ....+.+.+
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~--r~~~~g~k-Vli~~~~~d~r---~~~~i~srlG~~~~~~~-~~-~~~~i~~~i~ 82 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLH--RLEYADVK-YLVFKPKIDTR---SIRNIQSRTGTSLPSVE-VE-SAPEILNYIM 82 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHH--HHHHTTCC-EEEEEECCCGG---GCSSCCCCCCCSSCCEE-ES-STHHHHHHHH
T ss_pred CcEEEEEECCCCCcHHHHHHHHHH--HHHhcCCE-EEEEEeccCch---HHHHHHHhcCCCccccc-cC-CHHHHHHHHH
Confidence 357899999999999999988877 44333222 55555443221 22244555554322211 00 112233333
Q ss_pred HhcCC-CcEEEEEeCCCCCChHH---HhhhccCCCCCEEEEEcCCC
Q 042541 265 KQMRI-EAILLVLDDVWPGSESL---LQKLGFQLPDYKILVTSRSE 306 (695)
Q Consensus 265 ~~l~~-~~~LlVlDdv~~~~~~~---~~~l~~~~~gs~iivTtR~~ 306 (695)
+.+.+ +.-+||+|.+....... +..+.. .|..||+|-+..
T Consensus 83 ~~~~~~~~dvViIDEaQ~l~~~~ve~l~~L~~--~gi~Vil~Gl~~ 126 (223)
T 2b8t_A 83 SNSFNDETKVIGIDEVQFFDDRICEVANILAE--NGFVVIISGLDK 126 (223)
T ss_dssp STTSCTTCCEEEECSGGGSCTHHHHHHHHHHH--TTCEEEEECCSB
T ss_pred HHhhCCCCCEEEEecCccCcHHHHHHHHHHHh--CCCeEEEEeccc
Confidence 22333 34599999986554332 333322 378899988854
No 247
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.08 E-value=0.022 Score=54.51 Aligned_cols=47 Identities=23% Similarity=0.354 Sum_probs=31.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCCCCCHHHHHHH
Q 042541 187 RQFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSKNPNVKAIVQK 238 (695)
Q Consensus 187 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~~~~~~~~~~~ 238 (695)
..+++|+|++|+|||||++.++.. .... ...++|+.... ....+...
T Consensus 23 G~~~~i~G~~GsGKTtl~~~l~~~--~~~~-~~~v~~~~~~~--~~~~~~~~ 69 (235)
T 2w0m_A 23 GFFIALTGEPGTGKTIFSLHFIAK--GLRD-GDPCIYVTTEE--SRDSIIRQ 69 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHH--HHHH-TCCEEEEESSS--CHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHH--HHHC-CCeEEEEEccc--CHHHHHHH
Confidence 478999999999999999998853 2111 22377776544 34444443
No 248
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=96.00 E-value=0.0042 Score=72.21 Aligned_cols=43 Identities=21% Similarity=0.281 Sum_probs=35.6
Q ss_pred CCCCCcchHHHHHHHHHcC---------CceEEEEEcCCCCcHHHHHHHHhc
Q 042541 167 ISPGLDVPLKELKMELFKD---------GRQFIVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 167 ~~vGr~~~~~~l~~~L~~~---------~~~vv~I~G~gGiGKTtLa~~~~~ 209 (695)
.++|.+..++.+...+... ....+.|+|+.|+|||++|+.+++
T Consensus 559 ~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~ 610 (854)
T 1qvr_A 559 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAA 610 (854)
T ss_dssp HSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHH
T ss_pred ccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999888877621 125789999999999999999987
No 249
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.93 E-value=0.066 Score=56.25 Aligned_cols=24 Identities=29% Similarity=0.451 Sum_probs=21.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhc
Q 042541 186 GRQFIVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 186 ~~~vv~I~G~gGiGKTtLa~~~~~ 209 (695)
.+.+|.++|.+|+||||++..++.
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~ 122 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLAR 122 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHH
Confidence 368999999999999999988876
No 250
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=95.83 E-value=0.0066 Score=57.07 Aligned_cols=39 Identities=26% Similarity=0.330 Sum_probs=31.4
Q ss_pred CcchHHHHHHHHHc---CCceEEEEEcCCCCcHHHHHHHHhc
Q 042541 171 LDVPLKELKMELFK---DGRQFIVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 171 r~~~~~~l~~~L~~---~~~~vv~I~G~gGiGKTtLa~~~~~ 209 (695)
|+..++++.+.+.. ....+|+|+|+.|+||||+++.+..
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 3 LRDRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp HHHHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 45567777777763 3468999999999999999998876
No 251
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=95.76 E-value=0.02 Score=60.37 Aligned_cols=101 Identities=14% Similarity=0.125 Sum_probs=56.4
Q ss_pred HHHHHH-cCCceEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCCCC-CHHHHHHHHHHhcCC-------CCC
Q 042541 178 LKMELF-KDGRQFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSKNP-NVKAIVQKVLHHKGY-------PVP 248 (695)
Q Consensus 178 l~~~L~-~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~~~-~~~~~~~~i~~~l~~-------~~~ 248 (695)
.++.|. -...+.++|+|.+|+|||||+..+... ....+..-++++-+++.. ...++..++...-.. ...
T Consensus 141 ~ID~L~pi~kGq~~~i~G~sGvGKTtL~~~l~~~--~~~~~~~i~V~~~iGerttev~el~~~l~~~~~l~~tvvv~~~~ 218 (473)
T 1sky_E 141 VVDLLAPYIKGGKIGLFGGAGVGKTVLIQELIHN--IAQEHGGISVFAGVGERTREGNDLYHEMKDSGVISKTAMVFGQM 218 (473)
T ss_dssp HHHHHSCEETTCEEEEECCSSSCHHHHHHHHHHH--HHHHTCCCEEEEEESSCHHHHHHHHHHHHHTSGGGGEEEEEECT
T ss_pred HHHHHhhhccCCEEEEECCCCCCccHHHHHHHhh--hhhccCcEEEEeeeccCchHHHHHHHHhhhcCCcceeEEEEEcC
Confidence 345554 122356899999999999999998873 332233224566676654 345555555443000 000
Q ss_pred CCCChHHH-----HHHHHHHHHhcCCCcEEEEEeCCC
Q 042541 249 EFQTDEAA-----INDLERFFKQMRIEAILLVLDDVW 280 (695)
Q Consensus 249 ~~~~~~~~-----~~~l~~~~~~l~~~~~LlVlDdv~ 280 (695)
........ .-.+.+.+...+++++|+++||+.
T Consensus 219 ~d~pg~r~~~~~~~ltiAEyFrd~~G~~VLl~~D~it 255 (473)
T 1sky_E 219 NEPPGARMRVALTGLTMAEYFRDEQGQDGLLFIDNIF 255 (473)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHHSCCEEEEEEECTH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccHH
Confidence 11111111 113444443336899999999983
No 252
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=95.68 E-value=0.031 Score=57.58 Aligned_cols=84 Identities=18% Similarity=0.184 Sum_probs=50.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCCCCCHHHHHHHHHHhcCCCCCC-----CCChHHHHHHHH
Q 042541 187 RQFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSKNPNVKAIVQKVLHHKGYPVPE-----FQTDEAAINDLE 261 (695)
Q Consensus 187 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~~~~~l~ 261 (695)
..++.|+|.+|+||||||.+++.. .... ...++|++....++.. ..+.++..... ....++..+.+.
T Consensus 74 G~li~I~G~pGsGKTtlal~la~~--~~~~-g~~vlyi~~E~s~~~~-----~a~~~g~d~~~l~i~~~~~~e~~l~~l~ 145 (366)
T 1xp8_A 74 GRITEIYGPESGGKTTLALAIVAQ--AQKA-GGTCAFIDAEHALDPV-----YARALGVNTDELLVSQPDNGEQALEIME 145 (366)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHH--HHHT-TCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CcEEEEEcCCCCChHHHHHHHHHH--HHHC-CCeEEEEECCCChhHH-----HHHHcCCCHHHceeecCCcHHHHHHHHH
Confidence 468999999999999999888763 2211 2248899998877654 24445432110 112233333333
Q ss_pred HHHHhcCCCcEEEEEeCCC
Q 042541 262 RFFKQMRIEAILLVLDDVW 280 (695)
Q Consensus 262 ~~~~~l~~~~~LlVlDdv~ 280 (695)
.+.+ ..+.-+||+|.+.
T Consensus 146 ~l~~--~~~~~lVVIDsl~ 162 (366)
T 1xp8_A 146 LLVR--SGAIDVVVVDSVA 162 (366)
T ss_dssp HHHT--TTCCSEEEEECTT
T ss_pred HHHh--cCCCCEEEEeChH
Confidence 2221 2456699999974
No 253
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=95.66 E-value=0.029 Score=57.52 Aligned_cols=85 Identities=16% Similarity=0.189 Sum_probs=51.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCCCCCHHHHHHHHHHhcCCCCCC-----CCChHHHHHHHH
Q 042541 187 RQFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSKNPNVKAIVQKVLHHKGYPVPE-----FQTDEAAINDLE 261 (695)
Q Consensus 187 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~~~~~l~ 261 (695)
..++.|+|++|+||||||.+++.. .... ...++|++....++.. ..+.++..... ..+.++....+.
T Consensus 61 G~iv~I~G~pGsGKTtLal~la~~--~~~~-g~~vlyi~~E~~~~~~-----~a~~lG~~~~~l~i~~~~~~e~~l~~~~ 132 (349)
T 2zr9_A 61 GRVIEIYGPESSGKTTVALHAVAN--AQAA-GGIAAFIDAEHALDPE-----YAKKLGVDTDSLLVSQPDTGEQALEIAD 132 (349)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHH--HHHT-TCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH--HHhC-CCeEEEEECCCCcCHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHH
Confidence 579999999999999999988763 2221 2348899998777653 24445533211 112222222222
Q ss_pred HHHHhcCCCcEEEEEeCCCC
Q 042541 262 RFFKQMRIEAILLVLDDVWP 281 (695)
Q Consensus 262 ~~~~~l~~~~~LlVlDdv~~ 281 (695)
.+.. ..+.-+||+|.+..
T Consensus 133 ~l~~--~~~~~lIVIDsl~~ 150 (349)
T 2zr9_A 133 MLVR--SGALDIIVIDSVAA 150 (349)
T ss_dssp HHHT--TTCCSEEEEECGGG
T ss_pred HHHh--cCCCCEEEEcChHh
Confidence 2221 34567999999743
No 254
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=95.62 E-value=0.025 Score=58.12 Aligned_cols=84 Identities=17% Similarity=0.203 Sum_probs=50.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCCCCCHHHHHHHHHHhcCCCCCC-----CCChHHHHHHHH
Q 042541 187 RQFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSKNPNVKAIVQKVLHHKGYPVPE-----FQTDEAAINDLE 261 (695)
Q Consensus 187 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~~~~~l~ 261 (695)
..++.|.|.+|+||||||.+++.. .... ...++|++....++... ...++..... ....++..+.+.
T Consensus 63 G~ii~I~G~pGsGKTtLal~la~~--~~~~-g~~vlyid~E~s~~~~~-----a~~~g~~~~~l~i~~~~~~e~~~~~~~ 134 (356)
T 1u94_A 63 GRIVEIYGPESSGKTTLTLQVIAA--AQRE-GKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD 134 (356)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHH--HHHT-TCCEEEEESSCCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH--HHHC-CCeEEEEeCCCCccHHH-----HHHcCCChhheeeeCCCCHHHHHHHHH
Confidence 579999999999999999988763 2221 22488999988776442 3445432211 012222222232
Q ss_pred HHHHhcCCCcEEEEEeCCC
Q 042541 262 RFFKQMRIEAILLVLDDVW 280 (695)
Q Consensus 262 ~~~~~l~~~~~LlVlDdv~ 280 (695)
.+.+ ..+.-+||+|.+.
T Consensus 135 ~l~~--~~~~~lVVIDsl~ 151 (356)
T 1u94_A 135 ALAR--SGAVDVIVVDSVA 151 (356)
T ss_dssp HHHH--HTCCSEEEEECGG
T ss_pred HHHh--ccCCCEEEEcCHH
Confidence 2222 2456699999974
No 255
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=95.56 E-value=0.022 Score=57.08 Aligned_cols=39 Identities=23% Similarity=0.260 Sum_probs=28.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeC
Q 042541 186 GRQFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVS 227 (695)
Q Consensus 186 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~ 227 (695)
...+|.|+|++|+||||++..++.. .... ...+.++...
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~--l~~~-g~kV~lv~~D 141 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKM--FVDE-GKSVVLAAAD 141 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHH--HHHT-TCCEEEEEEC
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHH--HHhc-CCEEEEEccc
Confidence 3579999999999999999998873 3222 2336666654
No 256
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=95.53 E-value=0.044 Score=52.35 Aligned_cols=47 Identities=19% Similarity=0.271 Sum_probs=32.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhccccc---cccCCCcEEEEEeCCCCCHH
Q 042541 187 RQFIVVSAPGGYGKTTLVQRLCKDDQV---QGKFKDDIFYVTVSKNPNVK 233 (695)
Q Consensus 187 ~~vv~I~G~gGiGKTtLa~~~~~~~~~---~~~f~~~~~wv~~~~~~~~~ 233 (695)
..+++|+|+.|+|||||++.++..... ......+++|++-.......
T Consensus 25 G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~~ 74 (231)
T 4a74_A 25 QAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPE 74 (231)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCHH
Confidence 479999999999999999998752111 11234457788876554433
No 257
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=95.48 E-value=0.18 Score=51.47 Aligned_cols=159 Identities=13% Similarity=0.013 Sum_probs=95.9
Q ss_pred HHHHHHHcCCceEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCCCCCHHHHHHHHHHhcCCCCCCCCChHHH
Q 042541 177 ELKMELFKDGRQFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSKNPNVKAIVQKVLHHKGYPVPEFQTDEAA 256 (695)
Q Consensus 177 ~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ 256 (695)
++.+.|...-.++..++|+.|.||++.+..+.... ....|+. ...+.+....++.++...+-.
T Consensus 8 ~l~~~l~~~~~~~yl~~G~e~~~~~~~~~~l~~~~-~~~~~~~-~~~~~~~~~~~~~~l~~~~~~--------------- 70 (343)
T 1jr3_D 8 QLRAQLNEGLRAAYLLLGNDPLLLQESQDAVRQVA-AAQGFEE-HHTFSIDPNTDWNAIFSLCQA--------------- 70 (343)
T ss_dssp THHHHHHHCCCSEEEEEESCHHHHHHHHHHHHHHH-HHHTCCE-EEEEECCTTCCHHHHHHHHHH---------------
T ss_pred HHHHHHhcCCCcEEEEECCcHHHHHHHHHHHHHHH-HhCCCCe-eEEEEecCCCCHHHHHHHhcC---------------
Confidence 34444543446799999999999999998887621 1123432 112233333333333222110
Q ss_pred HHHHHHHHHhcCCCcEEEEEeCCCC-CCh----HHHhhhccCCCCCEEEEEcCCC-C-----------CCCCCeEecCCC
Q 042541 257 INDLERFFKQMRIEAILLVLDDVWP-GSE----SLLQKLGFQLPDYKILVTSRSE-F-----------PQFGSVHYLKPL 319 (695)
Q Consensus 257 ~~~l~~~~~~l~~~~~LlVlDdv~~-~~~----~~~~~l~~~~~gs~iivTtR~~-~-----------~~~~~~~~l~~L 319 (695)
..+-+++-++|+|++.. ... .++..+....+++.+|+++... . ...+..++..++
T Consensus 71 --------~plf~~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l 142 (343)
T 1jr3_D 71 --------MSLFASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTP 142 (343)
T ss_dssp --------HHHCCSCEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCC
T ss_pred --------cCCccCCeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCC
Confidence 12246678899999866 332 1444454445577777665431 0 123347899999
Q ss_pred ChHHHHHHHHHhccCCCCCCCCCchHHHHHHHHhcCCchhHHHH
Q 042541 320 TYEAARTLFLHSANLQDGNSYIPDENIVSKILRACKGCPLALKV 363 (695)
Q Consensus 320 ~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~ 363 (695)
+.++-...+...+...+. .-..+.+..+++.++|.+..+..
T Consensus 143 ~~~~l~~~l~~~~~~~g~---~i~~~a~~~l~~~~~gdl~~~~~ 183 (343)
T 1jr3_D 143 EQAQLPRWVAARAKQLNL---ELDDAANQVLCYCYEGNLLALAQ 183 (343)
T ss_dssp CTTHHHHHHHHHHHHTTC---EECHHHHHHHHHSSTTCHHHHHH
T ss_pred CHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHhchHHHHHHH
Confidence 999998888776643322 12367788999999998877664
No 258
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=95.47 E-value=0.0067 Score=55.59 Aligned_cols=22 Identities=23% Similarity=0.422 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 042541 188 QFIVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 188 ~vv~I~G~gGiGKTtLa~~~~~ 209 (695)
.+|.|+|++|+||||+|+.+.+
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999987
No 259
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=95.46 E-value=0.012 Score=60.04 Aligned_cols=101 Identities=13% Similarity=0.123 Sum_probs=52.7
Q ss_pred HHHHHHH-cCCceEEEEEcCCCCcHHHHHHHHhccccccc-cCCCcEEEEEeCCCCC-HHHHHHHHHHhcCCCCCCCCCh
Q 042541 177 ELKMELF-KDGRQFIVVSAPGGYGKTTLVQRLCKDDQVQG-KFKDDIFYVTVSKNPN-VKAIVQKVLHHKGYPVPEFQTD 253 (695)
Q Consensus 177 ~l~~~L~-~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~-~f~~~~~wv~~~~~~~-~~~~~~~i~~~l~~~~~~~~~~ 253 (695)
++++.+. -.....++|+|++|+|||||++.+.+ .+.. +-+..++++-+++... +.++.+.+-..+-....+.+..
T Consensus 163 raID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar--~i~~~~~~v~~I~~lIGER~~Ev~~~~~~~~~~vV~atadep~~ 240 (422)
T 3ice_A 163 RVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQ--SIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPAS 240 (422)
T ss_dssp HHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHH--HHHHHCTTSEEEEEEESSCHHHHHHHHTTCSSEEEEECTTSCHH
T ss_pred eeeeeeeeecCCcEEEEecCCCCChhHHHHHHHH--HHhhcCCCeeEEEEEecCChHHHHHHHHHhCeEEEEeCCCCCHH
Confidence 3445444 33457899999999999999998876 3322 2232345677776542 2333222200010011111111
Q ss_pred HH-----HHHHHHHHHHhcCCCcEEEEEeCCC
Q 042541 254 EA-----AINDLERFFKQMRIEAILLVLDDVW 280 (695)
Q Consensus 254 ~~-----~~~~l~~~~~~l~~~~~LlVlDdv~ 280 (695)
.. ..-.+.+.+.. .++.+|+++||+.
T Consensus 241 ~r~~~a~~alt~AEyfrd-~G~dVLil~DslT 271 (422)
T 3ice_A 241 RHVQVAEMVIEKAKRLVE-HKKDVIILLDSIT 271 (422)
T ss_dssp HHHHHHHHHHHHHHHHHH-TSCEEEEEEECHH
T ss_pred HHHHHHHHHHHHHHHHHh-cCCCEEEEEeCch
Confidence 11 11112233322 6999999999983
No 260
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=95.45 E-value=0.036 Score=57.77 Aligned_cols=58 Identities=16% Similarity=0.170 Sum_probs=37.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcccccc---ccCCCcEEEEEeCCCCCHHHHHHHHHHhcCC
Q 042541 187 RQFIVVSAPGGYGKTTLVQRLCKDDQVQ---GKFKDDIFYVTVSKNPNVKAIVQKVLHHKGY 245 (695)
Q Consensus 187 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~---~~f~~~~~wv~~~~~~~~~~~~~~i~~~l~~ 245 (695)
..++.|+|++|+|||||+..++-..... ..-..+++|++....+....+. .+.+.++.
T Consensus 178 Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~-~~a~~~gl 238 (400)
T 3lda_A 178 GSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLV-SIAQRFGL 238 (400)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHH-HHHHHTTC
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHH-HHHHHcCC
Confidence 4799999999999999999765311111 1123347899887766655443 35555554
No 261
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.38 E-value=0.053 Score=54.12 Aligned_cols=86 Identities=16% Similarity=0.165 Sum_probs=47.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCCC-CCHHHHHHHHHHhcCCCCCCCCChHHHHHHHHHHHH
Q 042541 187 RQFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSKN-PNVKAIVQKVLHHKGYPVPEFQTDEAAINDLERFFK 265 (695)
Q Consensus 187 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~ 265 (695)
..+++|+|++|+||||++..++.. ....-...+..+..... ....+.+....+..+.+....... ..+...+.
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA~~--l~~~~G~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~~----~~l~~al~ 178 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLAAI--SMLEKHKKIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTK----EEFQQAKE 178 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHH--HHHTTCCCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSSH----HHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH--HHHhcCCEEEEEecCcccchHHHHHHHHHHhcCCCeEecCCH----HHHHHHHH
Confidence 579999999999999999988763 32111223666665432 233344444444444332111111 22344444
Q ss_pred hcCCCcEEEEEeCC
Q 042541 266 QMRIEAILLVLDDV 279 (695)
Q Consensus 266 ~l~~~~~LlVlDdv 279 (695)
.+ .+.=++|+|-.
T Consensus 179 ~~-~~~dlvIiDT~ 191 (296)
T 2px0_A 179 LF-SEYDHVFVDTA 191 (296)
T ss_dssp HG-GGSSEEEEECC
T ss_pred Hh-cCCCEEEEeCC
Confidence 44 44568889954
No 262
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=95.33 E-value=0.01 Score=56.13 Aligned_cols=35 Identities=31% Similarity=0.413 Sum_probs=26.8
Q ss_pred HHHHHHHHHc--CCceEEEEEcCCCCcHHHHHHHHhc
Q 042541 175 LKELKMELFK--DGRQFIVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 175 ~~~l~~~L~~--~~~~vv~I~G~gGiGKTtLa~~~~~ 209 (695)
+++|.+.+.. ....+|+|+|+.|+|||||++.+..
T Consensus 8 ~~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~ 44 (208)
T 3c8u_A 8 CQGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAA 44 (208)
T ss_dssp HHHHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3444454442 4568999999999999999999876
No 263
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=95.31 E-value=0.038 Score=58.32 Aligned_cols=41 Identities=27% Similarity=0.364 Sum_probs=30.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCC
Q 042541 186 GRQFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSK 228 (695)
Q Consensus 186 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~ 228 (695)
..++|.|+|.+|+||||++..++. .........+..++...
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~--~l~~~~G~kVllvd~D~ 139 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGK--FLREKHKKKVLVVSADV 139 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHH--HHHHTSCCCEEEEECCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH--HHHHhcCCeEEEEecCC
Confidence 368999999999999999998886 33332233476777753
No 264
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=95.25 E-value=0.0089 Score=54.45 Aligned_cols=20 Identities=25% Similarity=0.497 Sum_probs=18.7
Q ss_pred eEEEEEcCCCCcHHHHHHHH
Q 042541 188 QFIVVSAPGGYGKTTLVQRL 207 (695)
Q Consensus 188 ~vv~I~G~gGiGKTtLa~~~ 207 (695)
.+|+|.|++|+||||+|+.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 47999999999999999998
No 265
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=95.23 E-value=0.1 Score=52.68 Aligned_cols=52 Identities=17% Similarity=0.298 Sum_probs=37.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCCCCCHHHHHHHHHHhc
Q 042541 187 RQFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSKNPNVKAIVQKVLHHK 243 (695)
Q Consensus 187 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~~~~~~~~~~~i~~~l 243 (695)
..++.|.|.+|+||||||..++.+...++ ..++|++.. .+...+...++...
T Consensus 68 G~l~li~G~pG~GKTtl~l~ia~~~a~~g---~~vl~~slE--~s~~~l~~R~~~~~ 119 (315)
T 3bh0_A 68 RNFVLIAARPSMGKTAFALKQAKNMSDND---DVVNLHSLE--MGKKENIKRLIVTA 119 (315)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHTTT---CEEEEEESS--SCHHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHcC---CeEEEEECC--CCHHHHHHHHHHHH
Confidence 47999999999999999998876422222 347788776 45677777776553
No 266
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.21 E-value=0.027 Score=48.62 Aligned_cols=35 Identities=11% Similarity=-0.034 Sum_probs=24.7
Q ss_pred CCcEEEeccCCCCCcc--cccccccccEEeeccccCC
Q 042541 602 KLKKIRLEHVSLPNSL--ATVRMNHLQKVSLVMCNVG 636 (695)
Q Consensus 602 ~L~~L~L~~~~l~~lp--~i~~l~~L~~L~l~~~~i~ 636 (695)
+|++|+|++|.|+.+| .+..+++|++|+|++|++.
T Consensus 32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 5777777777777777 5666777777777777543
No 267
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=95.20 E-value=0.01 Score=60.56 Aligned_cols=142 Identities=14% Similarity=0.151 Sum_probs=80.9
Q ss_pred CCCCCcchHHHHHHHHHcCCceEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCCCCCHHHHHHHHHHhcCCC
Q 042541 167 ISPGLDVPLKELKMELFKDGRQFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSKNPNVKAIVQKVLHHKGYP 246 (695)
Q Consensus 167 ~~vGr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~~~~~~~~~~~i~~~l~~~ 246 (695)
.++|++..++.+...+..+ .-+.++|++|+|||+||+.+.+ .... ....+.++......++..... .. .
T Consensus 28 ~i~g~~~~~~~l~~~l~~~--~~vll~G~pGtGKT~la~~la~--~~~~----~~~~i~~~~~~~~~~l~g~~~--~~-~ 96 (331)
T 2r44_A 28 VVVGQKYMINRLLIGICTG--GHILLEGVPGLAKTLSVNTLAK--TMDL----DFHRIQFTPDLLPSDLIGTMI--YN-Q 96 (331)
T ss_dssp TCCSCHHHHHHHHHHHHHT--CCEEEESCCCHHHHHHHHHHHH--HTTC----CEEEEECCTTCCHHHHHEEEE--EE-T
T ss_pred ceeCcHHHHHHHHHHHHcC--CeEEEECCCCCcHHHHHHHHHH--HhCC----CeEEEecCCCCChhhcCCcee--ec-C
Confidence 5799999998888887764 3588999999999999999987 3322 234555544444443321110 00 0
Q ss_pred CCCCCChHHHHHHHHHHHHhcC-C--CcEEEEEeCCCCCChHHH----hhhcc-----------CCCCCEEEEEcCCCC-
Q 042541 247 VPEFQTDEAAINDLERFFKQMR-I--EAILLVLDDVWPGSESLL----QKLGF-----------QLPDYKILVTSRSEF- 307 (695)
Q Consensus 247 ~~~~~~~~~~~~~l~~~~~~l~-~--~~~LlVlDdv~~~~~~~~----~~l~~-----------~~~gs~iivTtR~~~- 307 (695)
... . + ... + ...++++|+++....... ..+.. ......||.|+....
T Consensus 97 ~~~--~-----------~-~~~~g~l~~~vl~iDEi~~~~~~~~~~Ll~~l~~~~~~~~g~~~~~~~~~~viat~np~~~ 162 (331)
T 2r44_A 97 HKG--N-----------F-EVKKGPVFSNFILADEVNRSPAKVQSALLECMQEKQVTIGDTTYPLDNPFLVLATQNPVEQ 162 (331)
T ss_dssp TTT--E-----------E-EEEECTTCSSEEEEETGGGSCHHHHHHHHHHHHHSEEEETTEEEECCSSCEEEEEECTTCC
T ss_pred CCC--c-----------e-EeccCcccccEEEEEccccCCHHHHHHHHHHHhcCceeeCCEEEECCCCEEEEEecCCCcc
Confidence 000 0 0 001 1 135899999977664322 22211 112345555655221
Q ss_pred -----------CCCCCeEecCCCChHHHHHHHHHhcc
Q 042541 308 -----------PQFGSVHYLKPLTYEAARTLFLHSAN 333 (695)
Q Consensus 308 -----------~~~~~~~~l~~L~~~ea~~Lf~~~~~ 333 (695)
......+.+++.+.++-.+++.....
T Consensus 163 ~~~~~l~~~l~~Rf~~~i~i~~p~~~~~~~il~~~~~ 199 (331)
T 2r44_A 163 EGTYPLPEAQVDRFMMKIHLTYLDKESELEVMRRVSN 199 (331)
T ss_dssp SCCCCCCHHHHTTSSEEEECCCCCHHHHHHHHHHHHC
T ss_pred cCcccCCHHHHhheeEEEEcCCCCHHHHHHHHHhccc
Confidence 01112578888888888888877654
No 268
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=95.19 E-value=0.0092 Score=54.23 Aligned_cols=22 Identities=27% Similarity=0.463 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 042541 188 QFIVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 188 ~vv~I~G~gGiGKTtLa~~~~~ 209 (695)
.+|+|.|+.|+||||+|+.+..
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999876
No 269
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=95.15 E-value=0.012 Score=54.65 Aligned_cols=24 Identities=29% Similarity=0.577 Sum_probs=21.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhc
Q 042541 186 GRQFIVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 186 ~~~vv~I~G~gGiGKTtLa~~~~~ 209 (695)
...+++|+|++|+|||||++.+..
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~ 31 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALAN 31 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHh
Confidence 347899999999999999999986
No 270
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=95.09 E-value=0.012 Score=54.03 Aligned_cols=22 Identities=23% Similarity=0.344 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 042541 188 QFIVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 188 ~vv~I~G~gGiGKTtLa~~~~~ 209 (695)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5799999999999999999876
No 271
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=95.08 E-value=0.014 Score=54.74 Aligned_cols=27 Identities=30% Similarity=0.337 Sum_probs=23.7
Q ss_pred HcCCceEEEEEcCCCCcHHHHHHHHhc
Q 042541 183 FKDGRQFIVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 183 ~~~~~~vv~I~G~gGiGKTtLa~~~~~ 209 (695)
......+|+|+|++|+||||+++.+..
T Consensus 21 ~~~~g~~i~l~G~sGsGKSTl~~~La~ 47 (200)
T 3uie_A 21 LDQKGCVIWVTGLSGSGKSTLACALNQ 47 (200)
T ss_dssp HTSCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 345568999999999999999999987
No 272
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=95.07 E-value=0.011 Score=54.47 Aligned_cols=23 Identities=22% Similarity=0.410 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhc
Q 042541 187 RQFIVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 187 ~~vv~I~G~gGiGKTtLa~~~~~ 209 (695)
.++++|+|+.|+|||||++.+..
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~ 27 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLIT 27 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 36899999999999999999876
No 273
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=95.06 E-value=0.018 Score=61.93 Aligned_cols=41 Identities=12% Similarity=0.117 Sum_probs=35.5
Q ss_pred CCCCCcchHHHHHHHHHcCCceEEEEEcCCCCcHHHHHHHHhc
Q 042541 167 ISPGLDVPLKELKMELFKDGRQFIVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 167 ~~vGr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~~~~ 209 (695)
.++|.+..++.+...+..+ .-|.|+|++|+|||+||+.+++
T Consensus 23 ~ivGq~~~i~~l~~al~~~--~~VLL~GpPGtGKT~LAraLa~ 63 (500)
T 3nbx_X 23 GLYERSHAIRLCLLAALSG--ESVFLLGPPGIAKSLIARRLKF 63 (500)
T ss_dssp TCSSCHHHHHHHHHHHHHT--CEEEEECCSSSSHHHHHHHGGG
T ss_pred hhHHHHHHHHHHHHHHhcC--CeeEeecCchHHHHHHHHHHHH
Confidence 4699999998888777655 4688999999999999999987
No 274
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=95.03 E-value=0.14 Score=53.88 Aligned_cols=102 Identities=13% Similarity=0.145 Sum_probs=61.2
Q ss_pred HHHHHHH-cCCceEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCCCC-CHHHHHHHHHHhcCCC--------
Q 042541 177 ELKMELF-KDGRQFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSKNP-NVKAIVQKVLHHKGYP-------- 246 (695)
Q Consensus 177 ~l~~~L~-~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~~~-~~~~~~~~i~~~l~~~-------- 246 (695)
++++.|. -...+-++|.|.+|+|||+|+..+.+.. .+.+-+. ++++-+++.. ...++.+++...=...
T Consensus 142 r~ID~l~pigkGQr~~Ifgg~G~GKT~L~~~i~~~~-~~~~~~v-~V~~~iGER~rEv~e~~~~~~~~~~l~~~~~~~rt 219 (482)
T 2ck3_D 142 KVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNV-AKAHGGY-SVFAGVGERTREGNDLYHEMIESGVINLKDATSKV 219 (482)
T ss_dssp HHHHHHSCEETTCEEEEEECTTSSHHHHHHHHHHHT-TTTCSSE-EEEEEESCCHHHHHHHHHHHHHHTSSCSSSSCCCE
T ss_pred EEEecccccccCCeeeeecCCCCChHHHHHHHHHhh-HhhCCCE-EEEEECCCcchHHHHHHHHhhhccccccccCCceE
Confidence 4556555 3345789999999999999999988731 1222233 5577777665 4667777777652211
Q ss_pred -----CCCCCCh-----HHHHHHHHHHHHhcCCCcEEEEEeCCC
Q 042541 247 -----VPEFQTD-----EAAINDLERFFKQMRIEAILLVLDDVW 280 (695)
Q Consensus 247 -----~~~~~~~-----~~~~~~l~~~~~~l~~~~~LlVlDdv~ 280 (695)
..+.+.. ....-.+.+.+..-+++.+||++||+.
T Consensus 220 vvV~~t~d~p~~~r~~~~~~a~tiAEyfrd~~G~dVLll~Dsit 263 (482)
T 2ck3_D 220 ALVYGQMNEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIF 263 (482)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHHHHHHHHTTCSCEEEEEECTH
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccHH
Confidence 0111111 111223344443336899999999983
No 275
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=95.02 E-value=0.016 Score=54.93 Aligned_cols=24 Identities=29% Similarity=0.373 Sum_probs=21.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhc
Q 042541 186 GRQFIVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 186 ~~~vv~I~G~gGiGKTtLa~~~~~ 209 (695)
..++|.|.|++|+||||.|+.+++
T Consensus 28 k~kiI~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 28 KAKVIFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp SCEEEEEECCTTCCHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999999998876
No 276
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=95.01 E-value=0.04 Score=57.83 Aligned_cols=93 Identities=13% Similarity=0.050 Sum_probs=49.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCCCC-CHHHHHHHHHHhcCCCCCCCCChHHHHHHHHHHH
Q 042541 186 GRQFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSKNP-NVKAIVQKVLHHKGYPVPEFQTDEAAINDLERFF 264 (695)
Q Consensus 186 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~ 264 (695)
...+|.++|++|+||||++..++.. .... ...+..++..... ...+-+.......+.+........+........+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~--l~~~-G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al 172 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYF--YKKR-GYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGV 172 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHH--HHHT-TCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHHc-CCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHH
Confidence 3589999999999999999988863 3222 2336566654321 2333344444555443221111111222223334
Q ss_pred HhcC-CCcEEEEEeCCCC
Q 042541 265 KQMR-IEAILLVLDDVWP 281 (695)
Q Consensus 265 ~~l~-~~~~LlVlDdv~~ 281 (695)
.... ...=++|+|-...
T Consensus 173 ~~a~~~~~DvvIIDTaGr 190 (433)
T 3kl4_A 173 DIFVKNKMDIIIVDTAGR 190 (433)
T ss_dssp HHTTTTTCSEEEEEECCC
T ss_pred HHHHhcCCCEEEEECCCC
Confidence 3333 3344667887653
No 277
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=94.98 E-value=0.0097 Score=61.23 Aligned_cols=44 Identities=23% Similarity=0.184 Sum_probs=32.9
Q ss_pred CCCCCCcchHHHHHHHHHcCCceEEEEEcCCCCcHHHHHHHHhc
Q 042541 166 VISPGLDVPLKELKMELFKDGRQFIVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 166 ~~~vGr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~~~~ 209 (695)
+.++|.+..++.+...+..+...-|.|+|++|+|||++|+.+++
T Consensus 24 ~~i~G~~~~~~~l~~~~~~~~~~~vLl~G~~GtGKT~la~~la~ 67 (350)
T 1g8p_A 24 SAIVGQEDMKLALLLTAVDPGIGGVLVFGDRGTGKSTAVRALAA 67 (350)
T ss_dssp GGSCSCHHHHHHHHHHHHCGGGCCEEEECCGGGCTTHHHHHHHH
T ss_pred hhccChHHHHHHHHHHhhCCCCceEEEECCCCccHHHHHHHHHH
Confidence 45799888666554444433334589999999999999999987
No 278
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=94.96 E-value=0.012 Score=55.20 Aligned_cols=23 Identities=30% Similarity=0.304 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhc
Q 042541 187 RQFIVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 187 ~~vv~I~G~gGiGKTtLa~~~~~ 209 (695)
..+|.|+|++|+||||+++.+..
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 46899999999999999999986
No 279
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=94.88 E-value=0.03 Score=54.66 Aligned_cols=164 Identities=12% Similarity=0.111 Sum_probs=84.4
Q ss_pred CCCCCCcchHHHHHHHHH---cC---------CceEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCCCCCHH
Q 042541 166 VISPGLDVPLKELKMELF---KD---------GRQFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSKNPNVK 233 (695)
Q Consensus 166 ~~~vGr~~~~~~l~~~L~---~~---------~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~~~~~~ 233 (695)
+.++|.+....++.+... .. -.+-+.|+|++|+|||||++.++.. .. .+.+.++..
T Consensus 16 ~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~--~~----~~~i~~~~~------ 83 (254)
T 1ixz_A 16 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGE--AR----VPFITASGS------ 83 (254)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHH--TT----CCEEEEEHH------
T ss_pred HHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHH--hC----CCEEEeeHH------
Confidence 457898876666654432 10 0223899999999999999999873 22 223344321
Q ss_pred HHHHHHHHhcCCCCCCCCChHHHHHHHHHHHHhc-CCCcEEEEEeCCCCC-----------Ch-------HHHhhhccCC
Q 042541 234 AIVQKVLHHKGYPVPEFQTDEAAINDLERFFKQM-RIEAILLVLDDVWPG-----------SE-------SLLQKLGFQL 294 (695)
Q Consensus 234 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~~l-~~~~~LlVlDdv~~~-----------~~-------~~~~~l~~~~ 294 (695)
+ +.... .......+..+++.. ...+.++++|++... .. .++..+....
T Consensus 84 ~----~~~~~---------~~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~ 150 (254)
T 1ixz_A 84 D----FVEMF---------VGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFE 150 (254)
T ss_dssp H----HHHSC---------TTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCC
T ss_pred H----HHHHH---------hhHHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCC
Confidence 1 11111 001123344444333 345789999998311 11 1122222111
Q ss_pred C-CCEEEE-EcCCCC------C---CCCCeEecCCCChHHHHHHHHHhccCCCCCCCCCchHHHHHHHHhcCCch
Q 042541 295 P-DYKILV-TSRSEF------P---QFGSVHYLKPLTYEAARTLFLHSANLQDGNSYIPDENIVSKILRACKGCP 358 (695)
Q Consensus 295 ~-gs~iiv-TtR~~~------~---~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~G~P 358 (695)
. ...+++ ||.... . .....+.++..+.++-.+++...+...... .......|++.+.|.-
T Consensus 151 ~~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~----~~~~~~~la~~~~G~~ 221 (254)
T 1ixz_A 151 KDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLA----EDVDLALLAKRTPGFV 221 (254)
T ss_dssp TTCCEEEEEEESCGGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTSCBC----TTCCHHHHHHTCTTCC
T ss_pred CCCCEEEEEccCCchhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHcCCCCC----cccCHHHHHHHcCCCC
Confidence 2 223333 444331 1 233467888888888888887655321110 1111445777777653
No 280
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=94.87 E-value=0.037 Score=55.31 Aligned_cols=92 Identities=16% Similarity=0.115 Sum_probs=48.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCCCC-CHHHHHHHHHHhcCCCCCCCCChHHHHHHHHHHHH
Q 042541 187 RQFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSKNP-NVKAIVQKVLHHKGYPVPEFQTDEAAINDLERFFK 265 (695)
Q Consensus 187 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~ 265 (695)
..+++++|.+|+||||++..++.. .... ...+.+++..... ...+.+....+..+.+.-......+..+.+...++
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~--~~~~-g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~ 174 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYF--YKKK-GFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVE 174 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHH--HHHT-TCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH--HHHC-CCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHH
Confidence 578999999999999999988863 3222 2347677765332 23333444455444321111000111122233444
Q ss_pred hcC-CCcEEEEEeCCCC
Q 042541 266 QMR-IEAILLVLDDVWP 281 (695)
Q Consensus 266 ~l~-~~~~LlVlDdv~~ 281 (695)
.++ .+-=++|+|-.-.
T Consensus 175 ~~~~~~~D~ViIDTpg~ 191 (297)
T 1j8m_F 175 KFLSEKMEIIIVDTAGR 191 (297)
T ss_dssp HHHHTTCSEEEEECCCS
T ss_pred HHHhCCCCEEEEeCCCC
Confidence 443 3334788887543
No 281
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=94.86 E-value=0.011 Score=54.63 Aligned_cols=22 Identities=45% Similarity=0.761 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 042541 188 QFIVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 188 ~vv~I~G~gGiGKTtLa~~~~~ 209 (695)
+.|.|+|++|+|||||++.+..
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~ 23 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5688999999999999999876
No 282
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=94.86 E-value=0.011 Score=53.84 Aligned_cols=22 Identities=32% Similarity=0.525 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 042541 188 QFIVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 188 ~vv~I~G~gGiGKTtLa~~~~~ 209 (695)
.+|+|+|+.|+||||+++.+..
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~ 26 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQ 26 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999886
No 283
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=94.86 E-value=0.094 Score=53.71 Aligned_cols=56 Identities=16% Similarity=0.224 Sum_probs=36.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhccccccccC---CCcEEEEEeCCCCCHHHHHHHHHHhc
Q 042541 187 RQFIVVSAPGGYGKTTLVQRLCKDDQVQGKF---KDDIFYVTVSKNPNVKAIVQKVLHHK 243 (695)
Q Consensus 187 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f---~~~~~wv~~~~~~~~~~~~~~i~~~l 243 (695)
..++.|+|+.|+|||||+..++......... ...++|++....+....+ ..+.+..
T Consensus 131 G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~i-~~i~q~~ 189 (349)
T 1pzn_A 131 QAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERI-REIAQNR 189 (349)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHH-HHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHHH-HHHHHHc
Confidence 5899999999999999999988632111111 234579988766544333 3344443
No 284
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=94.81 E-value=0.014 Score=53.92 Aligned_cols=23 Identities=30% Similarity=0.268 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhc
Q 042541 187 RQFIVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 187 ~~vv~I~G~gGiGKTtLa~~~~~ 209 (695)
.+.|.|+|+.|+||||+|+.+..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 46789999999999999999986
No 285
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=94.80 E-value=0.015 Score=54.52 Aligned_cols=25 Identities=28% Similarity=0.472 Sum_probs=22.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhc
Q 042541 185 DGRQFIVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 185 ~~~~vv~I~G~gGiGKTtLa~~~~~ 209 (695)
....+|+|+|+.|+|||||++.+..
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3467999999999999999999986
No 286
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=94.80 E-value=0.033 Score=58.36 Aligned_cols=38 Identities=26% Similarity=0.322 Sum_probs=27.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeC
Q 042541 187 RQFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVS 227 (695)
Q Consensus 187 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~ 227 (695)
..+|.|+|++|+||||++..++.. .... ...+..+...
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~LA~~--l~~~-g~~Vllvd~D 135 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAKLALY--YKGK-GRRPLLVAAD 135 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHH--HHTT-TCCEEEEECC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH--HHHc-CCeEEEeecc
Confidence 478999999999999999988863 3322 3336666653
No 287
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=94.78 E-value=0.022 Score=54.36 Aligned_cols=36 Identities=25% Similarity=0.254 Sum_probs=28.2
Q ss_pred HHHHHHHHHcCCceEEEEEcCCCCcHHHHHHHHhcc
Q 042541 175 LKELKMELFKDGRQFIVVSAPGGYGKTTLVQRLCKD 210 (695)
Q Consensus 175 ~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~~~~~ 210 (695)
.+.+...+.......|+|+|.+|+|||||+..+...
T Consensus 26 a~~~r~~~~~~~~~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 26 ADKNRKLLNKHGVVAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp HHHHHHHHHHTTCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 344445455556789999999999999999998873
No 288
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=94.73 E-value=0.058 Score=61.14 Aligned_cols=91 Identities=19% Similarity=0.254 Sum_probs=54.7
Q ss_pred CCCCCCcchHHHHHHHHHc-------------CCceEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCCCCCH
Q 042541 166 VISPGLDVPLKELKMELFK-------------DGRQFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSKNPNV 232 (695)
Q Consensus 166 ~~~vGr~~~~~~l~~~L~~-------------~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~~~~~ 232 (695)
..+.|.++..++|.+.+.- ...+-|.++|++|.|||.+|+++++. ... -++.++.
T Consensus 477 ~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e--~~~------~f~~v~~---- 544 (806)
T 3cf2_A 477 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANE--CQA------NFISIKG---- 544 (806)
T ss_dssp TTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHT--TTC------EEEECCH----
T ss_pred HHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHH--hCC------ceEEecc----
Confidence 4557777777777666541 11355889999999999999999982 222 2333331
Q ss_pred HHHHHHHHHhcCCCCCCCCChHHHHHHHHHHH-HhcCCCcEEEEEeCCCC
Q 042541 233 KAIVQKVLHHKGYPVPEFQTDEAAINDLERFF-KQMRIEAILLVLDDVWP 281 (695)
Q Consensus 233 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~-~~l~~~~~LlVlDdv~~ 281 (695)
.+++....+ ..+ ..++.++ ..-+..+++|++|+++.
T Consensus 545 ----~~l~s~~vG------ese---~~vr~lF~~Ar~~~P~IifiDEiDs 581 (806)
T 3cf2_A 545 ----PELLTMWFG------ESE---ANVREIFDKARQAAPCVLFFDELDS 581 (806)
T ss_dssp ----HHHHTTTCS------SCH---HHHHHHHHHHHTTCSEEEECSCGGG
T ss_pred ----chhhccccc------hHH---HHHHHHHHHHHHcCCceeechhhhH
Confidence 122222111 112 3345555 33356789999999853
No 289
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=94.71 E-value=0.017 Score=54.52 Aligned_cols=24 Identities=38% Similarity=0.558 Sum_probs=21.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhc
Q 042541 186 GRQFIVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 186 ~~~vv~I~G~gGiGKTtLa~~~~~ 209 (695)
...+|+|+|+.|+|||||++.+..
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~ 30 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFK 30 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEECcCCCCHHHHHHHHHh
Confidence 457899999999999999999986
No 290
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=94.70 E-value=0.02 Score=59.33 Aligned_cols=43 Identities=28% Similarity=0.436 Sum_probs=35.1
Q ss_pred CCCCCcchHHHHHHHHH-------------c--CCceEEEEEcCCCCcHHHHHHHHhc
Q 042541 167 ISPGLDVPLKELKMELF-------------K--DGRQFIVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 167 ~~vGr~~~~~~l~~~L~-------------~--~~~~vv~I~G~gGiGKTtLa~~~~~ 209 (695)
.++|.+..++.+...+. . .....|.++|++|+|||++|+.+++
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~ 73 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLAR 73 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHH
Confidence 36999998888888773 0 1246789999999999999999987
No 291
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=94.69 E-value=0.024 Score=56.40 Aligned_cols=24 Identities=29% Similarity=0.421 Sum_probs=21.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhc
Q 042541 186 GRQFIVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 186 ~~~vv~I~G~gGiGKTtLa~~~~~ 209 (695)
...+|+|+|..|+||||||+.+..
T Consensus 30 ~~~ii~I~G~sGsGKSTla~~L~~ 53 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTSIQIYN 53 (290)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999998876
No 292
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=94.66 E-value=0.023 Score=59.17 Aligned_cols=44 Identities=25% Similarity=0.371 Sum_probs=34.6
Q ss_pred CCCCCCcchHHHHHHHHH------------------------------cCCceEEEEEcCCCCcHHHHHHHHhc
Q 042541 166 VISPGLDVPLKELKMELF------------------------------KDGRQFIVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 166 ~~~vGr~~~~~~l~~~L~------------------------------~~~~~vv~I~G~gGiGKTtLa~~~~~ 209 (695)
..++|.+..++.|...+. ......+.++|++|+|||++|+.+++
T Consensus 21 ~~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~ 94 (376)
T 1um8_A 21 NYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAK 94 (376)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred hHccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHH
Confidence 356899888888877662 01235688999999999999999987
No 293
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=94.60 E-value=0.019 Score=53.86 Aligned_cols=23 Identities=48% Similarity=0.806 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhc
Q 042541 187 RQFIVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 187 ~~vv~I~G~gGiGKTtLa~~~~~ 209 (695)
..+++|+|+.|+|||||++.+..
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~ 29 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVK 29 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECcCCCCHHHHHHHHHh
Confidence 46899999999999999999876
No 294
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=94.60 E-value=0.018 Score=52.39 Aligned_cols=23 Identities=26% Similarity=0.481 Sum_probs=20.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhc
Q 042541 187 RQFIVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 187 ~~vv~I~G~gGiGKTtLa~~~~~ 209 (695)
..+++|+|+.|+|||||++.++.
T Consensus 9 gei~~l~G~nGsGKSTl~~~~~~ 31 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKKHFK 31 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHHHSC
T ss_pred CEEEEEECCCCCCHHHHHHHHcc
Confidence 47899999999999999997653
No 295
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=94.58 E-value=0.017 Score=53.46 Aligned_cols=22 Identities=23% Similarity=0.424 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 042541 188 QFIVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 188 ~vv~I~G~gGiGKTtLa~~~~~ 209 (695)
.+|.|.|+.|+||||+|+.+..
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999987
No 296
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=94.58 E-value=0.019 Score=53.21 Aligned_cols=23 Identities=39% Similarity=0.491 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhc
Q 042541 187 RQFIVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 187 ~~vv~I~G~gGiGKTtLa~~~~~ 209 (695)
..+|.|.|++|+||||+|+.+..
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999876
No 297
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=94.56 E-value=0.015 Score=53.84 Aligned_cols=22 Identities=45% Similarity=0.761 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 042541 188 QFIVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 188 ~vv~I~G~gGiGKTtLa~~~~~ 209 (695)
++++|+|+.|+|||||++.+..
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~ 23 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 5789999999999999999986
No 298
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=94.53 E-value=0.014 Score=54.69 Aligned_cols=23 Identities=26% Similarity=0.369 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhc
Q 042541 187 RQFIVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 187 ~~vv~I~G~gGiGKTtLa~~~~~ 209 (695)
..+|+|.|+.|+||||+|+.+..
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999876
No 299
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=94.49 E-value=0.019 Score=52.30 Aligned_cols=23 Identities=17% Similarity=0.392 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhc
Q 042541 187 RQFIVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 187 ~~vv~I~G~gGiGKTtLa~~~~~ 209 (695)
..+|+|+|+.|+||||+++.+..
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 46899999999999999999876
No 300
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=94.46 E-value=0.024 Score=53.87 Aligned_cols=38 Identities=21% Similarity=0.232 Sum_probs=29.3
Q ss_pred chHHHHHHHHHcCCceEEEEEcCCCCcHHHHHHHHhcc
Q 042541 173 VPLKELKMELFKDGRQFIVVSAPGGYGKTTLVQRLCKD 210 (695)
Q Consensus 173 ~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~~~~~ 210 (695)
+..+.+...+.....++|+|+|.+|+|||||+..+...
T Consensus 16 ~~~~~~~~~~~~~~~~~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 16 RLAEKNREALRESGTVAVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp HHHHHHHHHHHHHTCEEEEEEECTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHhhcccCceEEEEEcCCCCCHHHHHHHHHHH
Confidence 34455555555556789999999999999999998873
No 301
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=94.44 E-value=0.019 Score=53.14 Aligned_cols=22 Identities=32% Similarity=0.351 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 042541 188 QFIVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 188 ~vv~I~G~gGiGKTtLa~~~~~ 209 (695)
.+|.|.|++|+||||+++.+..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999987
No 302
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=94.39 E-value=0.032 Score=56.58 Aligned_cols=41 Identities=20% Similarity=0.316 Sum_probs=30.1
Q ss_pred CCCcchHHHHHHHHH----cCCceEEEEEcCCCCcHHHHHHHHhc
Q 042541 169 PGLDVPLKELKMELF----KDGRQFIVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 169 vGr~~~~~~l~~~L~----~~~~~vv~I~G~gGiGKTtLa~~~~~ 209 (695)
|+.+.-.+++.+.+. .+....|.|+|+.|+||||+++.++.
T Consensus 2 ~~~~~L~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~ 46 (359)
T 2ga8_A 2 VDTHKLADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQ 46 (359)
T ss_dssp CCHHHHHHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHH
Confidence 344445566666654 34456799999999999999998876
No 303
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=94.39 E-value=0.018 Score=53.14 Aligned_cols=24 Identities=29% Similarity=0.398 Sum_probs=21.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhc
Q 042541 186 GRQFIVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 186 ~~~vv~I~G~gGiGKTtLa~~~~~ 209 (695)
...+|.|.|++|+||||+++.+..
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~ 35 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLAD 35 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 357899999999999999999987
No 304
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=94.39 E-value=0.018 Score=54.20 Aligned_cols=23 Identities=35% Similarity=0.583 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhc
Q 042541 187 RQFIVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 187 ~~vv~I~G~gGiGKTtLa~~~~~ 209 (695)
..+|+|+|++|+|||||++.+..
T Consensus 12 ~~~i~l~G~sGsGKsTl~~~L~~ 34 (204)
T 2qor_A 12 IPPLVVCGPSGVGKGTLIKKVLS 34 (204)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 57899999999999999999876
No 305
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=94.36 E-value=0.023 Score=53.70 Aligned_cols=24 Identities=33% Similarity=0.349 Sum_probs=21.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhc
Q 042541 186 GRQFIVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 186 ~~~vv~I~G~gGiGKTtLa~~~~~ 209 (695)
...+|+|+|+.|+|||||++.+..
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~ 28 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALAR 28 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999876
No 306
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=94.34 E-value=0.022 Score=52.69 Aligned_cols=22 Identities=32% Similarity=0.718 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 042541 188 QFIVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 188 ~vv~I~G~gGiGKTtLa~~~~~ 209 (695)
.+++|+|+.|+|||||++.+..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 5789999999999999999975
No 307
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=94.33 E-value=0.27 Score=51.30 Aligned_cols=122 Identities=12% Similarity=0.141 Sum_probs=70.1
Q ss_pred CCCceEEEEEEccCccccCChhhcCCCCCcEEEEcccCCCCcccCcccccccCCCCcEEEeccCCCCCcc--cccccccc
Q 042541 548 QGPEVKVVVLNIRTKKYVLPDFLQKMDELKVLIVTNYGFSPAELNNFRVLSALSKLKKIRLEHVSLPNSL--ATVRMNHL 625 (695)
Q Consensus 548 ~~~~l~~L~l~~~~~~~~~p~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~lp--~i~~l~~L 625 (695)
.+..++.+.+..+.. ..-...+..+..+..+....... .. ..+..+.+|+.+.+.. ++..++ ++.++.+|
T Consensus 251 ~~~~l~~~~~~~~~~-~i~~~~F~~~~~l~~~~~~~~~i-----~~-~~F~~~~~L~~i~l~~-~i~~I~~~aF~~c~~L 322 (394)
T 4fs7_A 251 GCTDLESISIQNNKL-RIGGSLFYNCSGLKKVIYGSVIV-----PE-KTFYGCSSLTEVKLLD-SVKFIGEEAFESCTSL 322 (394)
T ss_dssp TCSSCCEEEECCTTC-EECSCTTTTCTTCCEEEECSSEE-----CT-TTTTTCTTCCEEEECT-TCCEECTTTTTTCTTC
T ss_pred ccccceeEEcCCCcc-eeeccccccccccceeccCceee-----cc-cccccccccccccccc-ccceechhhhcCCCCC
Confidence 455555555543311 11122455556666555543211 11 1145666777777754 356666 66677778
Q ss_pred cEEeeccccCCcccccchhhhcccCCCccEEecccccccccCchh-hcCCCCCceeeccc
Q 042541 626 QKVSLVMCNVGQVFRNSTFRISDAFPNLLEMDIDYCNDLIELPDG-LCDIVSMEKLRITN 684 (695)
Q Consensus 626 ~~L~l~~~~i~~~~~~~~~~l~~~l~~L~~L~l~~c~~l~~lP~~-i~~L~~L~~L~l~~ 684 (695)
+.++|..+ ++.+....+. .+++|+.+.+.. ++..++.. |.++.+|+.+++..
T Consensus 323 ~~i~lp~~-v~~I~~~aF~----~c~~L~~i~lp~--~l~~I~~~aF~~C~~L~~i~lp~ 375 (394)
T 4fs7_A 323 VSIDLPYL-VEEIGKRSFR----GCTSLSNINFPL--SLRKIGANAFQGCINLKKVELPK 375 (394)
T ss_dssp CEECCCTT-CCEECTTTTT----TCTTCCEECCCT--TCCEECTTTBTTCTTCCEEEEEG
T ss_pred CEEEeCCc-ccEEhHHhcc----CCCCCCEEEECc--cccEehHHHhhCCCCCCEEEECC
Confidence 87777543 6666666665 677777777764 25666543 66777777777754
No 308
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=94.33 E-value=0.023 Score=53.36 Aligned_cols=23 Identities=39% Similarity=0.655 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhc
Q 042541 187 RQFIVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 187 ~~vv~I~G~gGiGKTtLa~~~~~ 209 (695)
..+|+|+|+.|+||||+++.+..
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~ 28 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFE 28 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999876
No 309
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=94.32 E-value=0.017 Score=52.99 Aligned_cols=23 Identities=35% Similarity=0.437 Sum_probs=20.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhc
Q 042541 187 RQFIVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 187 ~~vv~I~G~gGiGKTtLa~~~~~ 209 (695)
.++|.|+|++|+||||+++.+..
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHH
Confidence 46789999999999999999886
No 310
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=94.32 E-value=0.023 Score=57.29 Aligned_cols=41 Identities=20% Similarity=0.329 Sum_probs=30.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCC
Q 042541 185 DGRQFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSK 228 (695)
Q Consensus 185 ~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~ 228 (695)
++.+||+|+|-|||||||.+..+.- -+.. ...+|.-+++..
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNLA~--aLA~-~GkkVllID~Dp 86 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNLSA--AFSI-LGKRVLQIGCDP 86 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHH--HHHH-TTCCEEEEEESS
T ss_pred CCceEEEEECCCccCHHHHHHHHHH--HHHH-CCCeEEEEecCC
Confidence 4579999999999999999987765 2322 233477888763
No 311
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=94.29 E-value=0.022 Score=51.58 Aligned_cols=23 Identities=35% Similarity=0.362 Sum_probs=20.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhc
Q 042541 187 RQFIVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 187 ~~vv~I~G~gGiGKTtLa~~~~~ 209 (695)
..+|+|.|+.|+||||+|+.+..
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHH
T ss_pred cceEEEECCCCCCHHHHHHHHHH
Confidence 47899999999999999999876
No 312
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=94.25 E-value=0.023 Score=55.51 Aligned_cols=22 Identities=18% Similarity=0.363 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 042541 188 QFIVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 188 ~vv~I~G~gGiGKTtLa~~~~~ 209 (695)
.+|.|.|+.|+||||||+.++.
T Consensus 2 ~li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHh
Confidence 4789999999999999999876
No 313
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=94.23 E-value=0.11 Score=54.87 Aligned_cols=101 Identities=13% Similarity=0.124 Sum_probs=60.9
Q ss_pred HHHHHH-cCCceEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCCCC-CHHHHHHHHHHhcCCC-------C-
Q 042541 178 LKMELF-KDGRQFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSKNP-NVKAIVQKVLHHKGYP-------V- 247 (695)
Q Consensus 178 l~~~L~-~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~~~-~~~~~~~~i~~~l~~~-------~- 247 (695)
+++.|. -...+-++|.|.+|+|||+|+..+.+.. .+.+-+. ++++-+++.. ...++.+++...=... .
T Consensus 155 vID~l~pigkGqr~gIfgg~GvGKT~L~~~l~~~~-a~~~~~v-~V~~~iGER~rEv~e~~~~~~~~~~l~~~~l~~~rt 232 (498)
T 1fx0_B 155 VVNLLAPYRRGGKIGLFGGAGVGKTVLIMELINNI-AKAHGGV-SVFGGVGERTREGNDLYMEMKESGVINEQNIAESKV 232 (498)
T ss_dssp THHHHSCCCTTCCEEEEECSSSSHHHHHHHHHHHT-TTTCSSC-EEEEEESCCSHHHHHHHHHHHHTTSSCSSTTCCCCE
T ss_pred EeeeecccccCCeEEeecCCCCCchHHHHHHHHHH-HhhCCCE-EEEEEcccCcHHHHHHHHhhhcccccccccccccce
Confidence 445555 3345779999999999999999888731 1223344 6688888765 5677777777642211 0
Q ss_pred ------CCCCC-----hHHHHHHHHHHHHhcCCCcEEEEEeCCC
Q 042541 248 ------PEFQT-----DEAAINDLERFFKQMRIEAILLVLDDVW 280 (695)
Q Consensus 248 ------~~~~~-----~~~~~~~l~~~~~~l~~~~~LlVlDdv~ 280 (695)
.+.+. .....-.+.+.+..-+++.+|+++||+.
T Consensus 233 vvV~~t~d~p~~~R~~~~~~altiAEyfrd~~G~dVLl~~Dsit 276 (498)
T 1fx0_B 233 ALVYGQMNEPPGARMRVGLTALTMAEYFRDVNEQDVLLFIDNIF 276 (498)
T ss_dssp EEEEECTTSCHHHHTTHHHHHHHTHHHHTTTSCCEEEEEEECSH
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccHH
Confidence 01010 1111222334443335799999999983
No 314
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=94.22 E-value=0.025 Score=52.13 Aligned_cols=23 Identities=22% Similarity=0.403 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhc
Q 042541 187 RQFIVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 187 ~~vv~I~G~gGiGKTtLa~~~~~ 209 (695)
...|+|+|+.|+||||+++.+..
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~ 32 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAA 32 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999876
No 315
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=94.22 E-value=0.026 Score=52.72 Aligned_cols=25 Identities=24% Similarity=0.236 Sum_probs=22.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhc
Q 042541 185 DGRQFIVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 185 ~~~~vv~I~G~gGiGKTtLa~~~~~ 209 (695)
....+|+|+|+.|+||||+++.+..
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~ 30 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRS 30 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHH
T ss_pred cCceEEEEECCCCCCHHHHHHHHHH
Confidence 3467899999999999999999986
No 316
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=94.22 E-value=0.024 Score=51.97 Aligned_cols=22 Identities=36% Similarity=0.643 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 042541 189 FIVVSAPGGYGKTTLVQRLCKD 210 (695)
Q Consensus 189 vv~I~G~gGiGKTtLa~~~~~~ 210 (695)
.++|+|+.|+|||||++.++..
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999988763
No 317
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=94.18 E-value=0.025 Score=52.51 Aligned_cols=24 Identities=25% Similarity=0.526 Sum_probs=21.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhc
Q 042541 186 GRQFIVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 186 ~~~vv~I~G~gGiGKTtLa~~~~~ 209 (695)
..++|+|+|+.|+|||||++.+..
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~ 41 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLS 41 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEEECcCCCCHHHHHHHHHh
Confidence 357899999999999999999886
No 318
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=94.18 E-value=0.027 Score=59.27 Aligned_cols=44 Identities=25% Similarity=0.310 Sum_probs=35.0
Q ss_pred CCCCCCcchHHHHHHHHHc--------------CCceEEEEEcCCCCcHHHHHHHHhc
Q 042541 166 VISPGLDVPLKELKMELFK--------------DGRQFIVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 166 ~~~vGr~~~~~~l~~~L~~--------------~~~~vv~I~G~gGiGKTtLa~~~~~ 209 (695)
.+++|-++.++.+...+.. ...+-|.++|++|+||||+|+.++.
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~ 72 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAK 72 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHH
Confidence 4679988888888766632 1245689999999999999999987
No 319
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=94.18 E-value=0.02 Score=53.62 Aligned_cols=23 Identities=39% Similarity=0.706 Sum_probs=20.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhc
Q 042541 187 RQFIVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 187 ~~vv~I~G~gGiGKTtLa~~~~~ 209 (695)
.++++|+|+.|+|||||++.+..
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 36799999999999999999876
No 320
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=94.18 E-value=0.026 Score=52.39 Aligned_cols=23 Identities=26% Similarity=0.319 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhc
Q 042541 187 RQFIVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 187 ~~vv~I~G~gGiGKTtLa~~~~~ 209 (695)
..+|+|.|+.|+||||+|+.+..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999998876
No 321
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=94.18 E-value=0.028 Score=52.92 Aligned_cols=23 Identities=39% Similarity=0.375 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhc
Q 042541 187 RQFIVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 187 ~~vv~I~G~gGiGKTtLa~~~~~ 209 (695)
..+|+|+|++|+||||+|+.+..
T Consensus 21 ~~~i~i~G~~GsGKSTl~~~L~~ 43 (207)
T 2qt1_A 21 TFIIGISGVTNSGKTTLAKNLQK 43 (207)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 47899999999999999999876
No 322
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=94.17 E-value=0.023 Score=53.15 Aligned_cols=21 Identities=29% Similarity=0.393 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 042541 189 FIVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 189 vv~I~G~gGiGKTtLa~~~~~ 209 (695)
.|+|.|+.|+||||+++.+..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 689999999999999999987
No 323
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=94.16 E-value=0.038 Score=54.96 Aligned_cols=23 Identities=22% Similarity=0.346 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhc
Q 042541 187 RQFIVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 187 ~~vv~I~G~gGiGKTtLa~~~~~ 209 (695)
..+|.|.|++|+||||+|+.+..
T Consensus 33 ~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 33 PTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 57899999999999999999876
No 324
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=94.15 E-value=0.063 Score=46.22 Aligned_cols=53 Identities=13% Similarity=-0.007 Sum_probs=44.6
Q ss_pred cEEEeccCCCC--Ccc-cccccccccEEeeccccCCcccccchhhhcccCCCccEEeccccc
Q 042541 604 KKIRLEHVSLP--NSL-ATVRMNHLQKVSLVMCNVGQVFRNSTFRISDAFPNLLEMDIDYCN 662 (695)
Q Consensus 604 ~~L~L~~~~l~--~lp-~i~~l~~L~~L~l~~~~i~~~~~~~~~~l~~~l~~L~~L~l~~c~ 662 (695)
..++-++++++ .+| .+ -.+|++|+|++|.|+.+++..+. .+++|++|+|++|.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~----~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLD----ALPALRTAHLGANP 66 (130)
T ss_dssp TEEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGG----GCTTCCEEECCSSC
T ss_pred CEEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhh----hccccCEEEecCCC
Confidence 46788888888 888 43 34799999999999999998887 89999999999864
No 325
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=94.15 E-value=0.02 Score=52.27 Aligned_cols=22 Identities=41% Similarity=0.433 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 042541 188 QFIVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 188 ~vv~I~G~gGiGKTtLa~~~~~ 209 (695)
+.|.|.|++|+||||+|+.+..
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 3589999999999999999986
No 326
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=94.10 E-value=0.027 Score=54.94 Aligned_cols=25 Identities=20% Similarity=0.294 Sum_probs=21.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhc
Q 042541 185 DGRQFIVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 185 ~~~~vv~I~G~gGiGKTtLa~~~~~ 209 (695)
....+|+|.|+.|+||||+|+.+..
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHH
Confidence 3467899999999999999998876
No 327
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=94.10 E-value=0.099 Score=52.92 Aligned_cols=57 Identities=14% Similarity=0.164 Sum_probs=35.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCCC-CCHHHHHHHHHHhcC
Q 042541 185 DGRQFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSKN-PNVKAIVQKVLHHKG 244 (695)
Q Consensus 185 ~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~~-~~~~~~~~~i~~~l~ 244 (695)
....+++|+|+.|+||||+++.++.. .+.. ...+.++...-. ....+-+....+.++
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~--l~~~-~g~V~l~g~D~~r~~a~eql~~~~~~~g 184 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANW--LKNH-GFSVVIAASDTFRAGAIEQLEEHAKRIG 184 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHH--HHHT-TCCEEEEEECCSSTTHHHHHHHHHHHTT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH--HHhc-CCEEEEEeecccccchHHHHHHHHHHcC
Confidence 45789999999999999999998863 2221 233655544321 233444455555555
No 328
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=94.09 E-value=0.027 Score=52.33 Aligned_cols=24 Identities=25% Similarity=0.379 Sum_probs=21.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhc
Q 042541 186 GRQFIVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 186 ~~~vv~I~G~gGiGKTtLa~~~~~ 209 (695)
...+|+|.|+.|+||||+|+.+.+
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 357899999999999999999876
No 329
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=94.08 E-value=0.03 Score=52.48 Aligned_cols=24 Identities=33% Similarity=0.357 Sum_probs=21.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhc
Q 042541 186 GRQFIVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 186 ~~~vv~I~G~gGiGKTtLa~~~~~ 209 (695)
...+|+|.|+.|+||||+|+.+.+
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 357899999999999999999876
No 330
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=94.07 E-value=0.024 Score=53.13 Aligned_cols=22 Identities=27% Similarity=0.323 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 042541 188 QFIVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 188 ~vv~I~G~gGiGKTtLa~~~~~ 209 (695)
.+|+|+|+.|+||||+++.+..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3699999999999999999875
No 331
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=94.05 E-value=0.025 Score=54.05 Aligned_cols=22 Identities=32% Similarity=0.622 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 042541 188 QFIVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 188 ~vv~I~G~gGiGKTtLa~~~~~ 209 (695)
.+|+|+|+.|+||||+++.+..
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999876
No 332
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=94.01 E-value=0.028 Score=52.78 Aligned_cols=22 Identities=23% Similarity=0.300 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 042541 188 QFIVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 188 ~vv~I~G~gGiGKTtLa~~~~~ 209 (695)
.+|+|+|+.|+||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999865
No 333
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=93.99 E-value=0.02 Score=52.70 Aligned_cols=22 Identities=36% Similarity=0.431 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 042541 188 QFIVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 188 ~vv~I~G~gGiGKTtLa~~~~~ 209 (695)
.+|.|+|++|+||||+|+.+..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999876
No 334
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=93.95 E-value=0.15 Score=54.00 Aligned_cols=51 Identities=18% Similarity=0.316 Sum_probs=35.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCCCCCHHHHHHHHHHh
Q 042541 187 RQFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSKNPNVKAIVQKVLHH 242 (695)
Q Consensus 187 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~~~~~~~~~~~i~~~ 242 (695)
..++.|.|.+|+||||||..++.+...+ ...++|++... +...+...++..
T Consensus 197 G~liiIaG~pG~GKTtlal~ia~~~a~~---g~~vl~fSlEm--s~~ql~~R~~~~ 247 (444)
T 3bgw_A 197 RNFVLIAARPSMGKTAFALKQAKNMSDN---DDVVNLHSLEM--GKKENIKRLIVT 247 (444)
T ss_dssp SCEEEEEECSSSSHHHHHHHHHHHHHHT---TCEEEEECSSS--CTTHHHHHHHHH
T ss_pred CcEEEEEeCCCCChHHHHHHHHHHHHHc---CCEEEEEECCC--CHHHHHHHHHHH
Confidence 4689999999999999999888742222 33477776654 344555555543
No 335
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=93.95 E-value=0.027 Score=52.44 Aligned_cols=23 Identities=26% Similarity=0.391 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhc
Q 042541 187 RQFIVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 187 ~~vv~I~G~gGiGKTtLa~~~~~ 209 (695)
..+|+|.|+.|+||||+|+.+..
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999886
No 336
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=93.93 E-value=0.03 Score=51.55 Aligned_cols=23 Identities=35% Similarity=0.509 Sum_probs=20.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhc
Q 042541 187 RQFIVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 187 ~~vv~I~G~gGiGKTtLa~~~~~ 209 (695)
...|+|.|+.|+||||+++.+.+
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999876
No 337
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=93.92 E-value=0.021 Score=58.28 Aligned_cols=52 Identities=15% Similarity=0.134 Sum_probs=34.9
Q ss_pred HHHHHHHH-cCCceEEEEEcCCCCcHHHHHHHHhccccccc-cCCCcEEEEEeCCC
Q 042541 176 KELKMELF-KDGRQFIVVSAPGGYGKTTLVQRLCKDDQVQG-KFKDDIFYVTVSKN 229 (695)
Q Consensus 176 ~~l~~~L~-~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~-~f~~~~~wv~~~~~ 229 (695)
-++++.+. -...+-++|+|.+|+|||+|+..+.+. +.. +-+..++++-+++.
T Consensus 163 iraID~l~PigrGQR~lIfg~~g~GKT~Ll~~Ia~~--i~~~~~dv~~V~~lIGER 216 (427)
T 3l0o_A 163 TRLIDLFAPIGKGQRGMIVAPPKAGKTTILKEIANG--IAENHPDTIRIILLIDER 216 (427)
T ss_dssp HHHHHHHSCCBTTCEEEEEECTTCCHHHHHHHHHHH--HHHHCTTSEEEEEECSCC
T ss_pred chhhhhcccccCCceEEEecCCCCChhHHHHHHHHH--HhhcCCCeEEEEEEeccC
Confidence 35556665 234578899999999999999988873 322 22333456666654
No 338
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=93.92 E-value=0.068 Score=53.35 Aligned_cols=38 Identities=26% Similarity=0.322 Sum_probs=27.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeC
Q 042541 187 RQFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVS 227 (695)
Q Consensus 187 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~ 227 (695)
..+++|+|.+|+||||++..++.. .... ...+.++...
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~la~~--~~~~-~~~v~l~~~d 135 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAKLALY--YKGK-GRRPLLVAAD 135 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHH--HHHT-TCCEEEEECC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH--HHHc-CCeEEEecCC
Confidence 478999999999999999998873 3222 3346666654
No 339
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=93.90 E-value=0.024 Score=51.50 Aligned_cols=22 Identities=27% Similarity=0.400 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 042541 188 QFIVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 188 ~vv~I~G~gGiGKTtLa~~~~~ 209 (695)
.+|.|.|+.|+||||+|+.+..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999876
No 340
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=93.87 E-value=0.031 Score=52.61 Aligned_cols=24 Identities=33% Similarity=0.515 Sum_probs=21.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhc
Q 042541 186 GRQFIVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 186 ~~~vv~I~G~gGiGKTtLa~~~~~ 209 (695)
...+++|+|+.|+|||||++.+..
T Consensus 19 ~Gei~~l~GpnGsGKSTLl~~l~g 42 (207)
T 1znw_A 19 VGRVVVLSGPSAVGKSTVVRCLRE 42 (207)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHh
Confidence 347999999999999999999876
No 341
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=93.87 E-value=0.032 Score=54.68 Aligned_cols=23 Identities=30% Similarity=0.514 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhc
Q 042541 187 RQFIVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 187 ~~vv~I~G~gGiGKTtLa~~~~~ 209 (695)
..+|.|.|++|+||||+|+.+..
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 46899999999999999999986
No 342
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=93.82 E-value=0.13 Score=55.20 Aligned_cols=38 Identities=24% Similarity=0.219 Sum_probs=26.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeC
Q 042541 187 RQFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVS 227 (695)
Q Consensus 187 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~ 227 (695)
.++|.|+|.+|+||||++..++.. .... ...+..|+..
T Consensus 101 ~~vI~ivG~~GvGKTTl~~kLA~~--l~~~-G~kVllVd~D 138 (504)
T 2j37_W 101 QNVIMFVGLQGSGKTTTCSKLAYY--YQRK-GWKTCLICAD 138 (504)
T ss_dssp -EEEEEECSTTSSHHHHHHHHHHH--HHHT-TCCEEEEEEC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH--HHhC-CCeEEEEecc
Confidence 579999999999999999988863 2221 2235556553
No 343
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=93.82 E-value=0.045 Score=50.78 Aligned_cols=35 Identities=23% Similarity=0.260 Sum_probs=26.5
Q ss_pred HHHHHHHHHc-CCceEEEEEcCCCCcHHHHHHHHhc
Q 042541 175 LKELKMELFK-DGRQFIVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 175 ~~~l~~~L~~-~~~~vv~I~G~gGiGKTtLa~~~~~ 209 (695)
+..+..++.. +....+.|+|++|+||||+|..+++
T Consensus 45 ~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a~ala~ 80 (212)
T 1tue_A 45 LGALKSFLKGTPKKNCLVFCGPANTGKSYFGMSFIH 80 (212)
T ss_dssp HHHHHHHHHTCTTCSEEEEESCGGGCHHHHHHHHHH
T ss_pred HHHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHH
Confidence 5556555553 2234799999999999999998887
No 344
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=93.81 E-value=0.035 Score=55.89 Aligned_cols=24 Identities=25% Similarity=0.137 Sum_probs=21.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhc
Q 042541 186 GRQFIVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 186 ~~~vv~I~G~gGiGKTtLa~~~~~ 209 (695)
...+|+|+|+.|+|||||++.+..
T Consensus 89 ~g~ivgI~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 89 VPFIIGVAGSVAVGKSTTARVLQA 112 (312)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCchHHHHHHHHHh
Confidence 357999999999999999998876
No 345
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=93.79 E-value=0.031 Score=54.24 Aligned_cols=23 Identities=35% Similarity=0.479 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhc
Q 042541 187 RQFIVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 187 ~~vv~I~G~gGiGKTtLa~~~~~ 209 (695)
..+|+|+|+.|+|||||++.+..
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~ 49 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQ 49 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 57999999999999999999985
No 346
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=93.79 E-value=0.033 Score=52.43 Aligned_cols=23 Identities=22% Similarity=0.254 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhc
Q 042541 187 RQFIVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 187 ~~vv~I~G~gGiGKTtLa~~~~~ 209 (695)
..+|+|.|+.|+||||+|+.+..
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Confidence 36899999999999999999987
No 347
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=93.78 E-value=0.034 Score=52.85 Aligned_cols=24 Identities=46% Similarity=0.701 Sum_probs=21.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhc
Q 042541 186 GRQFIVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 186 ~~~vv~I~G~gGiGKTtLa~~~~~ 209 (695)
...+++|+|+.|+|||||.+.+..
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g 38 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLK 38 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHhc
Confidence 357999999999999999999876
No 348
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=93.77 E-value=0.034 Score=50.23 Aligned_cols=23 Identities=26% Similarity=0.218 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhc
Q 042541 187 RQFIVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 187 ~~vv~I~G~gGiGKTtLa~~~~~ 209 (695)
.++++|+|..|+|||||+..+..
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 57899999999999999999887
No 349
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=93.76 E-value=0.033 Score=51.53 Aligned_cols=23 Identities=22% Similarity=0.315 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhc
Q 042541 187 RQFIVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 187 ~~vv~I~G~gGiGKTtLa~~~~~ 209 (695)
..+|+|.|+.|+||||+|+.+..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999876
No 350
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=93.74 E-value=0.04 Score=49.31 Aligned_cols=25 Identities=24% Similarity=0.365 Sum_probs=22.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhc
Q 042541 185 DGRQFIVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 185 ~~~~vv~I~G~gGiGKTtLa~~~~~ 209 (695)
....+++|+|+.|.|||||++.++.
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g 55 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQ 55 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHH
Confidence 4457999999999999999999886
No 351
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=93.74 E-value=0.072 Score=49.39 Aligned_cols=21 Identities=38% Similarity=0.569 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 042541 189 FIVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 189 vv~I~G~gGiGKTtLa~~~~~ 209 (695)
+|+|.|+.|+||||+++.+.+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999987
No 352
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=93.72 E-value=0.028 Score=53.40 Aligned_cols=23 Identities=35% Similarity=0.599 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhc
Q 042541 187 RQFIVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 187 ~~vv~I~G~gGiGKTtLa~~~~~ 209 (695)
..+++|+|+.|+|||||++.+..
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g 45 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLN 45 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 46899999999999999999876
No 353
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=93.72 E-value=0.036 Score=51.81 Aligned_cols=23 Identities=26% Similarity=0.414 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhc
Q 042541 187 RQFIVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 187 ~~vv~I~G~gGiGKTtLa~~~~~ 209 (695)
..+|+|+|+.|+||||+|+.+..
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999876
No 354
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=93.70 E-value=0.034 Score=50.22 Aligned_cols=21 Identities=24% Similarity=0.099 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 042541 189 FIVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 189 vv~I~G~gGiGKTtLa~~~~~ 209 (695)
.|+|.|+.|+||||+|+.+.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999876
No 355
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=93.66 E-value=0.039 Score=53.48 Aligned_cols=25 Identities=24% Similarity=0.272 Sum_probs=22.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhc
Q 042541 185 DGRQFIVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 185 ~~~~vv~I~G~gGiGKTtLa~~~~~ 209 (695)
....+|+|.|+.|+|||||++.+..
T Consensus 23 ~~g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 23 MRPFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp CCSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3457999999999999999998876
No 356
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=93.64 E-value=0.035 Score=55.88 Aligned_cols=40 Identities=15% Similarity=0.134 Sum_probs=27.7
Q ss_pred CCcchHHHHHHHHHc----CCceEEEEEcCCCCcHHHHHHHHhc
Q 042541 170 GLDVPLKELKMELFK----DGRQFIVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 170 Gr~~~~~~l~~~L~~----~~~~vv~I~G~gGiGKTtLa~~~~~ 209 (695)
|-...+..+...+.. ..+.+|+|.|+.|+|||||++.+..
T Consensus 71 ~~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ 114 (321)
T 3tqc_A 71 TARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKA 114 (321)
T ss_dssp HHHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred cchHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 333344444444432 2356999999999999999998865
No 357
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=93.63 E-value=0.057 Score=52.25 Aligned_cols=25 Identities=24% Similarity=0.141 Sum_probs=22.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhc
Q 042541 185 DGRQFIVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 185 ~~~~vv~I~G~gGiGKTtLa~~~~~ 209 (695)
....+|+|.|++|+||||+|+.+.+
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3567899999999999999999876
No 358
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=93.61 E-value=0.042 Score=50.88 Aligned_cols=117 Identities=11% Similarity=0.130 Sum_probs=65.7
Q ss_pred hhcCCCCCcEEEEccc-CCCCcccCc-ccccccCCCCcEEEeccCCCC-----Ccc-cccccccccEEeeccccCCcccc
Q 042541 569 FLQKMDELKVLIVTNY-GFSPAELNN-FRVLSALSKLKKIRLEHVSLP-----NSL-ATVRMNHLQKVSLVMCNVGQVFR 640 (695)
Q Consensus 569 ~~~~l~~Lr~L~l~~~-~~~~~~~~~-~~~l~~l~~L~~L~L~~~~l~-----~lp-~i~~l~~L~~L~l~~~~i~~~~~ 640 (695)
.+..-+.|+.|+|+++ .+....... ...+..-..|+.|+|++|.+. .+- .+..=+.|++|+|++|.|...--
T Consensus 36 ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga 115 (197)
T 1pgv_A 36 LREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELL 115 (197)
T ss_dssp HHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHH
T ss_pred HHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHH
Confidence 3445567888888764 442222111 122444566888888888876 233 34445678888888888764211
Q ss_pred cchhhhcccCCCccEEecccccc--cc-----cCchhhcCCCCCceeecccc
Q 042541 641 NSTFRISDAFPNLLEMDIDYCND--LI-----ELPDGLCDIVSMEKLRITNC 685 (695)
Q Consensus 641 ~~~~~l~~~l~~L~~L~l~~c~~--l~-----~lP~~i~~L~~L~~L~l~~~ 685 (695)
..+...-..-+.|+.|+|++|.+ ++ .+-..+..=++|+.|+++.|
T Consensus 116 ~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~ 167 (197)
T 1pgv_A 116 ARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA 167 (197)
T ss_dssp HHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred HHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCC
Confidence 11100000234588888876532 22 23344555678888888764
No 359
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=93.59 E-value=0.035 Score=51.53 Aligned_cols=24 Identities=29% Similarity=0.292 Sum_probs=21.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhc
Q 042541 186 GRQFIVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 186 ~~~vv~I~G~gGiGKTtLa~~~~~ 209 (695)
...+|+|+|+.|+||||+++.+..
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHH
Confidence 357899999999999999999876
No 360
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=93.58 E-value=0.11 Score=54.76 Aligned_cols=25 Identities=24% Similarity=0.303 Sum_probs=22.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhc
Q 042541 185 DGRQFIVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 185 ~~~~vv~I~G~gGiGKTtLa~~~~~ 209 (695)
....+|.|+|++|+||||+|+.++.
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3468999999999999999999886
No 361
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=93.54 E-value=0.025 Score=51.87 Aligned_cols=23 Identities=30% Similarity=0.437 Sum_probs=16.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhc
Q 042541 187 RQFIVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 187 ~~vv~I~G~gGiGKTtLa~~~~~ 209 (695)
..+|.|.|+.|+||||+|+.+..
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999876
No 362
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=93.54 E-value=0.035 Score=51.38 Aligned_cols=21 Identities=33% Similarity=0.498 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 042541 189 FIVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 189 vv~I~G~gGiGKTtLa~~~~~ 209 (695)
+|+|.|+.|+||||+|+.+.+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999987
No 363
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=93.49 E-value=0.039 Score=55.29 Aligned_cols=24 Identities=29% Similarity=0.490 Sum_probs=21.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhc
Q 042541 186 GRQFIVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 186 ~~~vv~I~G~gGiGKTtLa~~~~~ 209 (695)
...+|+|+|++|+||||+++.++.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lag 124 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGR 124 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH
Confidence 357999999999999999999886
No 364
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=93.44 E-value=0.27 Score=52.22 Aligned_cols=52 Identities=10% Similarity=0.128 Sum_probs=37.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCCCCCHHHHHHHHHHh
Q 042541 187 RQFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSKNPNVKAIVQKVLHH 242 (695)
Q Consensus 187 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~~~~~~~~~~~i~~~ 242 (695)
..++.|.|.+|+||||||..++.+ ........++|++.. .+...+...++..
T Consensus 200 G~l~ii~G~pg~GKT~lal~ia~~--~a~~~g~~vl~~slE--~~~~~l~~R~~~~ 251 (444)
T 2q6t_A 200 GSLNIIAARPAMGKTAFALTIAQN--AALKEGVGVGIYSLE--MPAAQLTLRMMCS 251 (444)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHH--HHHTTCCCEEEEESS--SCHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHH--HHHhCCCeEEEEECC--CCHHHHHHHHHHH
Confidence 468999999999999999988874 222123347787775 3566777776654
No 365
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=93.43 E-value=0.046 Score=53.29 Aligned_cols=23 Identities=30% Similarity=0.312 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhc
Q 042541 187 RQFIVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 187 ~~vv~I~G~gGiGKTtLa~~~~~ 209 (695)
..+|.|+|++|+||||+|+.+..
T Consensus 32 ~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 32 PIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp CEEEEEESCGGGTTHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 57899999999999999999876
No 366
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=93.41 E-value=0.052 Score=57.24 Aligned_cols=24 Identities=29% Similarity=0.432 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcc
Q 042541 187 RQFIVVSAPGGYGKTTLVQRLCKD 210 (695)
Q Consensus 187 ~~vv~I~G~gGiGKTtLa~~~~~~ 210 (695)
..+|.|+|.+|+||||++..++..
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~ 122 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARY 122 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999888763
No 367
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=93.41 E-value=0.041 Score=52.29 Aligned_cols=23 Identities=30% Similarity=0.351 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhc
Q 042541 187 RQFIVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 187 ~~vv~I~G~gGiGKTtLa~~~~~ 209 (695)
...|.|.|+.|+||||+|+.+..
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999999876
No 368
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=93.41 E-value=0.038 Score=52.09 Aligned_cols=23 Identities=30% Similarity=0.382 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhc
Q 042541 187 RQFIVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 187 ~~vv~I~G~gGiGKTtLa~~~~~ 209 (695)
..+|+|.|+.|+||||+++.+..
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 46899999999999999999987
No 369
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=93.41 E-value=0.041 Score=51.90 Aligned_cols=23 Identities=26% Similarity=0.384 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhc
Q 042541 187 RQFIVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 187 ~~vv~I~G~gGiGKTtLa~~~~~ 209 (695)
..+|+|.|+.|+||||+|+.+.+
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999987
No 370
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=93.36 E-value=0.04 Score=53.72 Aligned_cols=24 Identities=38% Similarity=0.520 Sum_probs=21.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhc
Q 042541 186 GRQFIVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 186 ~~~vv~I~G~gGiGKTtLa~~~~~ 209 (695)
...+|+|+|+.|+||||+++.+..
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La~ 49 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALAE 49 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999985
No 371
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=93.18 E-value=0.052 Score=49.61 Aligned_cols=23 Identities=26% Similarity=0.254 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhc
Q 042541 187 RQFIVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 187 ~~vv~I~G~gGiGKTtLa~~~~~ 209 (695)
..+|+|+|+.|+||||+++.+..
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999986
No 372
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=93.17 E-value=0.045 Score=51.15 Aligned_cols=23 Identities=26% Similarity=0.283 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhc
Q 042541 187 RQFIVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 187 ~~vv~I~G~gGiGKTtLa~~~~~ 209 (695)
..+|+|.|+.|+||||+++.+.+
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~ 26 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIME 26 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 46899999999999999999987
No 373
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=93.15 E-value=0.32 Score=52.60 Aligned_cols=53 Identities=11% Similarity=0.185 Sum_probs=37.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCCCCCHHHHHHHHHHhc
Q 042541 187 RQFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSKNPNVKAIVQKVLHHK 243 (695)
Q Consensus 187 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~~~~~~~~~~~i~~~l 243 (695)
..++.|.|.+|+||||||..++.+ ........++|++... +...+...++...
T Consensus 242 G~l~li~G~pG~GKT~lal~~a~~--~a~~~g~~vl~~s~E~--s~~~l~~r~~~~~ 294 (503)
T 1q57_A 242 GEVIMVTSGSGMVMSTFVRQQALQ--WGTAMGKKVGLAMLEE--SVEETAEDLIGLH 294 (503)
T ss_dssp TCEEEEEESSCHHHHHHHHHHHHH--HTTTSCCCEEEEESSS--CHHHHHHHHHHHH
T ss_pred CeEEEEeecCCCCchHHHHHHHHH--HHHhcCCcEEEEeccC--CHHHHHHHHHHHH
Confidence 478999999999999999988873 3222233477887755 4667777766543
No 374
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=93.15 E-value=0.34 Score=49.04 Aligned_cols=52 Identities=12% Similarity=0.205 Sum_probs=37.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCCCCCHHHHHHHHHHhc
Q 042541 187 RQFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSKNPNVKAIVQKVLHHK 243 (695)
Q Consensus 187 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~~~~~~~~~~~i~~~l 243 (695)
..++.|.|.+|+||||||..++.+... ....++|++.. -+...+...++...
T Consensus 46 G~LiiIaG~pG~GKTt~al~ia~~~a~---~g~~Vl~fSlE--ms~~ql~~Rlls~~ 97 (338)
T 4a1f_A 46 GSLVIIGARPSMGKTSLMMNMVLSALN---DDRGVAVFSLE--MSAEQLALRALSDL 97 (338)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHHHH---TTCEEEEEESS--SCHHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHH---cCCeEEEEeCC--CCHHHHHHHHHHHh
Confidence 468999999999999999988874222 23346777664 45677777776543
No 375
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=93.12 E-value=0.043 Score=52.45 Aligned_cols=23 Identities=26% Similarity=0.299 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhc
Q 042541 187 RQFIVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 187 ~~vv~I~G~gGiGKTtLa~~~~~ 209 (695)
...|.|.|+.|+||||+|+.+..
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999999876
No 376
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=93.12 E-value=0.083 Score=53.09 Aligned_cols=44 Identities=18% Similarity=0.258 Sum_probs=31.3
Q ss_pred cCCceEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCCCC
Q 042541 184 KDGRQFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSKNP 230 (695)
Q Consensus 184 ~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~~~ 230 (695)
....++|+|+|-||+||||+|..++. ..... ..+++-|+.....
T Consensus 38 ~~~~~vI~v~~KGGvGKTT~a~nLA~--~La~~-G~~VlliD~D~~~ 81 (307)
T 3end_A 38 ITGAKVFAVYGKGGIGKSTTSSNLSA--AFSIL-GKRVLQIGCDPKH 81 (307)
T ss_dssp --CCEEEEEECSTTSSHHHHHHHHHH--HHHHT-TCCEEEEEESSSC
T ss_pred cCCceEEEEECCCCccHHHHHHHHHH--HHHHC-CCeEEEEeCCCCC
Confidence 34578999999999999999988876 33322 3347888886433
No 377
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=93.11 E-value=0.07 Score=50.31 Aligned_cols=26 Identities=23% Similarity=0.210 Sum_probs=22.8
Q ss_pred cCCceEEEEEcCCCCcHHHHHHHHhc
Q 042541 184 KDGRQFIVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 184 ~~~~~vv~I~G~gGiGKTtLa~~~~~ 209 (695)
.....+|.|.|+.|+||||+++.+..
T Consensus 22 ~~~~~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 22 NQRGLTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp TSSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHH
Confidence 34468999999999999999999886
No 378
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=93.05 E-value=0.046 Score=51.71 Aligned_cols=21 Identities=29% Similarity=0.343 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 042541 189 FIVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 189 vv~I~G~gGiGKTtLa~~~~~ 209 (695)
.|+|.|++|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999876
No 379
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=93.03 E-value=0.025 Score=53.44 Aligned_cols=22 Identities=36% Similarity=0.584 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 042541 188 QFIVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 188 ~vv~I~G~gGiGKTtLa~~~~~ 209 (695)
.+|+|.|+.|+||||+++.+..
T Consensus 1 ~~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 1 MLIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp CEEEEEEEEEEEHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 3789999999999999999876
No 380
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=93.01 E-value=0.19 Score=62.36 Aligned_cols=85 Identities=16% Similarity=0.187 Sum_probs=54.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCCCCCHHHHHHHHHHhcCCCCCC-----CCChHHHHHHH
Q 042541 186 GRQFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSKNPNVKAIVQKVLHHKGYPVPE-----FQTDEAAINDL 260 (695)
Q Consensus 186 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~~~~~l 260 (695)
..+.|.|+|++|+|||+||.++... ...+ ...++|+++.+.++... ++.++.+... ....+.....+
T Consensus 1426 ~g~~vll~GppGtGKT~LA~ala~e--a~~~-G~~v~Fi~~e~~~~~l~-----a~~~G~dl~~l~v~~~~~~E~~l~~~ 1497 (2050)
T 3cmu_A 1426 MGRIVEIYGPESSGKTTLTLQVIAA--AQRE-GKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEIC 1497 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHH--HHTT-TCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHHc-CCcEEEEEcccccCHHH-----HHHcCCCchhceeecCChHHHHHHHH
Confidence 3689999999999999999998873 2222 23477999988877666 3444422111 11223333333
Q ss_pred HHHHHhcCCCcEEEEEeCCC
Q 042541 261 ERFFKQMRIEAILLVLDDVW 280 (695)
Q Consensus 261 ~~~~~~l~~~~~LlVlDdv~ 280 (695)
..+.+ ..+..+||+|.+.
T Consensus 1498 ~~lvr--~~~~~lVVIDsi~ 1515 (2050)
T 3cmu_A 1498 DALAR--SGAVDVIVVDSVA 1515 (2050)
T ss_dssp HHHHH--HTCCSEEEESCGG
T ss_pred HHHHh--cCCCCEEEEcChh
Confidence 33332 3567899999984
No 381
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=93.00 E-value=0.058 Score=51.11 Aligned_cols=23 Identities=22% Similarity=0.413 Sum_probs=20.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhc
Q 042541 187 RQFIVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 187 ~~vv~I~G~gGiGKTtLa~~~~~ 209 (695)
..+|+|.|+.|+||||+++.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999864
No 382
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=92.96 E-value=0.044 Score=52.17 Aligned_cols=23 Identities=17% Similarity=0.164 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhc
Q 042541 187 RQFIVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 187 ~~vv~I~G~gGiGKTtLa~~~~~ 209 (695)
...|.|.|+.|+||||+++.+..
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999986
No 383
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=92.96 E-value=0.031 Score=50.73 Aligned_cols=22 Identities=27% Similarity=0.462 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 042541 188 QFIVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 188 ~vv~I~G~gGiGKTtLa~~~~~ 209 (695)
++++|+|..|+|||||++.+..
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~ 24 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMP 24 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998876
No 384
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=92.95 E-value=0.057 Score=53.51 Aligned_cols=24 Identities=29% Similarity=0.455 Sum_probs=21.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhc
Q 042541 186 GRQFIVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 186 ~~~vv~I~G~gGiGKTtLa~~~~~ 209 (695)
...+|+|.|+.|+||||+|+.+..
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 357899999999999999999873
No 385
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=92.94 E-value=0.056 Score=51.97 Aligned_cols=23 Identities=26% Similarity=0.572 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhc
Q 042541 187 RQFIVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 187 ~~vv~I~G~gGiGKTtLa~~~~~ 209 (695)
..+++|+|+.|+|||||.+.+..
T Consensus 31 Ge~~~iiG~nGsGKSTLl~~l~G 53 (235)
T 3tif_A 31 GEFVSIMGPSGSGKSTMLNIIGC 53 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCcHHHHHHHHhc
Confidence 47899999999999999999875
No 386
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=92.89 E-value=0.046 Score=50.58 Aligned_cols=23 Identities=30% Similarity=0.622 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcc
Q 042541 188 QFIVVSAPGGYGKTTLVQRLCKD 210 (695)
Q Consensus 188 ~vv~I~G~gGiGKTtLa~~~~~~ 210 (695)
.+++|+|+.|+|||||++.++..
T Consensus 2 ~~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHHhh
Confidence 36899999999999999988763
No 387
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=92.88 E-value=0.05 Score=51.45 Aligned_cols=21 Identities=29% Similarity=0.338 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 042541 189 FIVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 189 vv~I~G~gGiGKTtLa~~~~~ 209 (695)
.|+|.|++|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999875
No 388
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=92.87 E-value=0.1 Score=49.87 Aligned_cols=23 Identities=35% Similarity=0.661 Sum_probs=21.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhc
Q 042541 187 RQFIVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 187 ~~vv~I~G~gGiGKTtLa~~~~~ 209 (695)
..+|+|.|+.|+||||+++.+..
T Consensus 26 g~~i~i~G~~GsGKsT~~~~l~~ 48 (229)
T 4eaq_A 26 SAFITFEGPEGSGKTTVINEVYH 48 (229)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Confidence 47899999999999999999987
No 389
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=92.84 E-value=0.053 Score=51.74 Aligned_cols=23 Identities=30% Similarity=0.471 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhc
Q 042541 187 RQFIVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 187 ~~vv~I~G~gGiGKTtLa~~~~~ 209 (695)
..+++|+|+.|+|||||.+.++.
T Consensus 30 Ge~~~iiG~nGsGKSTLl~~l~G 52 (224)
T 2pcj_A 30 GEFVSIIGASGSGKSTLLYILGL 52 (224)
T ss_dssp TCEEEEEECTTSCHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 46899999999999999999885
No 390
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=92.82 E-value=0.036 Score=53.22 Aligned_cols=23 Identities=43% Similarity=0.720 Sum_probs=16.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHh-c
Q 042541 187 RQFIVVSAPGGYGKTTLVQRLC-K 209 (695)
Q Consensus 187 ~~vv~I~G~gGiGKTtLa~~~~-~ 209 (695)
..+++|+|+.|+|||||++.+. .
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~ 50 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEK 50 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC-
T ss_pred CCEEEEECCCCCCHHHHHHHHHhc
Confidence 4689999999999999999988 5
No 391
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=92.81 E-value=0.14 Score=51.17 Aligned_cols=53 Identities=17% Similarity=0.313 Sum_probs=34.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCCCCCHHHHHHHHHHh
Q 042541 186 GRQFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSKNPNVKAIVQKVLHH 242 (695)
Q Consensus 186 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~~~~~~~~~~~i~~~ 242 (695)
...+++|.|++|+|||||++.++.. ........++|++... +...+...+...
T Consensus 34 ~G~~~~i~G~~G~GKTTl~~~ia~~--~~~~~G~~v~~~~~e~--~~~~~~~r~~~~ 86 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTFVRQQALQ--WGTAMGKKVGLAMLEE--SVEETAEDLIGL 86 (296)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHH--HHHTSCCCEEEEESSS--CHHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHH--HHHHcCCeEEEEeCcC--CHHHHHHHHHHH
Confidence 3479999999999999999998863 2222122376776543 344454444443
No 392
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=92.81 E-value=0.053 Score=52.53 Aligned_cols=23 Identities=22% Similarity=0.356 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhc
Q 042541 187 RQFIVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 187 ~~vv~I~G~gGiGKTtLa~~~~~ 209 (695)
..+++|+|+.|+|||||++.++.
T Consensus 30 G~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 30 GTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHH
Confidence 47999999999999999998873
No 393
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=92.78 E-value=0.059 Score=49.04 Aligned_cols=23 Identities=35% Similarity=0.481 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhc
Q 042541 187 RQFIVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 187 ~~vv~I~G~gGiGKTtLa~~~~~ 209 (695)
.++++|+|+.|+|||||+..+..
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~ 28 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIP 28 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHH
Confidence 57899999999999999999886
No 394
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=92.76 E-value=0.063 Score=53.74 Aligned_cols=23 Identities=30% Similarity=0.432 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhc
Q 042541 187 RQFIVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 187 ~~vv~I~G~gGiGKTtLa~~~~~ 209 (695)
..+++|+|+.|+||||+++.++.
T Consensus 100 g~vi~lvG~nGsGKTTll~~Lag 122 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTSLGKLAH 122 (302)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 47999999999999999999887
No 395
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=92.72 E-value=0.06 Score=51.92 Aligned_cols=22 Identities=23% Similarity=0.549 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 042541 188 QFIVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 188 ~vv~I~G~gGiGKTtLa~~~~~ 209 (695)
.+++|+|+.|+|||||.+.++.
T Consensus 25 e~~~liG~nGsGKSTLl~~l~G 46 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAG 46 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHhC
Confidence 7899999999999999999886
No 396
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=92.71 E-value=0.34 Score=50.45 Aligned_cols=79 Identities=11% Similarity=0.211 Sum_probs=34.2
Q ss_pred cccCCCCcEEEeccCCCCCcc--cccccccccEEeeccccCCcccccchhhhcccCCCccEEecccccccccCchhhcCC
Q 042541 597 LSALSKLKKIRLEHVSLPNSL--ATVRMNHLQKVSLVMCNVGQVFRNSTFRISDAFPNLLEMDIDYCNDLIELPDGLCDI 674 (695)
Q Consensus 597 l~~l~~L~~L~L~~~~l~~lp--~i~~l~~L~~L~l~~~~i~~~~~~~~~~l~~~l~~L~~L~l~~c~~l~~lP~~i~~L 674 (695)
+..+.+|+.+.|.. +++.++ ++.++.+|+.+.|..+ ++.+....|. ++++|+.+++.++.. .+ ..+...
T Consensus 307 F~~c~~L~~i~lp~-~v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~----~C~~L~~i~~~~~~~--~~-~~~~~~ 377 (394)
T 4gt6_A 307 FAGCISLKSIDIPE-GITQILDDAFAGCEQLERIAIPSS-VTKIPESAFS----NCTALNNIEYSGSRS--QW-NAISTD 377 (394)
T ss_dssp TTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGT----TCTTCCEEEESSCHH--HH-HTCBCC
T ss_pred ecCCCCcCEEEeCC-cccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhh----CCCCCCEEEECCcee--eh-hhhhcc
Confidence 44455555555543 244444 4555555555555332 4444444444 555555555554311 11 234444
Q ss_pred CCCceeeccc
Q 042541 675 VSMEKLRITN 684 (695)
Q Consensus 675 ~~L~~L~l~~ 684 (695)
.+|+.|.+..
T Consensus 378 ~~L~~i~i~~ 387 (394)
T 4gt6_A 378 SGLQNLPVAP 387 (394)
T ss_dssp CCC-------
T ss_pred CCCCEEEeCC
Confidence 4555554443
No 397
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=92.67 E-value=0.065 Score=53.94 Aligned_cols=42 Identities=14% Similarity=0.061 Sum_probs=28.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhccccccc-cCCCcEEEEEeCCC
Q 042541 186 GRQFIVVSAPGGYGKTTLVQRLCKDDQVQG-KFKDDIFYVTVSKN 229 (695)
Q Consensus 186 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~-~f~~~~~wv~~~~~ 229 (695)
...+|+|+|+.|+|||||++.+.. .... .....+.+++....
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~--~l~~~~~~G~i~vi~~d~~ 121 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQA--LLSRWPEHRRVELITTDGF 121 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHH--HHTTSTTCCCEEEEEGGGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH--HHhhCCCCCeEEEEecCCc
Confidence 457999999999999999999876 2221 12233656665543
No 398
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=92.66 E-value=0.046 Score=53.01 Aligned_cols=23 Identities=22% Similarity=0.257 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhc
Q 042541 187 RQFIVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 187 ~~vv~I~G~gGiGKTtLa~~~~~ 209 (695)
..+|+|+|+.|+||||+++.+..
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999986
No 399
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=92.64 E-value=0.065 Score=51.58 Aligned_cols=23 Identities=26% Similarity=0.433 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhc
Q 042541 187 RQFIVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 187 ~~vv~I~G~gGiGKTtLa~~~~~ 209 (695)
..+++|+|+.|+|||||++.++.
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~G 53 (237)
T 2cbz_A 31 GALVAVVGQVGCGKSSLLSALLA 53 (237)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 47899999999999999999876
No 400
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=92.60 E-value=0.11 Score=53.11 Aligned_cols=51 Identities=22% Similarity=0.356 Sum_probs=35.6
Q ss_pred HHcCCceEEEEEcCCCCcHHHHHHHHhccccccc-cCCCcEEEEEeCCCCCHHH
Q 042541 182 LFKDGRQFIVVSAPGGYGKTTLVQRLCKDDQVQG-KFKDDIFYVTVSKNPNVKA 234 (695)
Q Consensus 182 L~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~-~f~~~~~wv~~~~~~~~~~ 234 (695)
+.....+++.+.|.||+||||+|..++. .... ....+++-++.....+...
T Consensus 13 l~~~~~~i~~~~gkGGvGKTt~a~~lA~--~la~~~~g~~vllid~D~~~~l~~ 64 (348)
T 3io3_A 13 VQHDSLKWIFVGGKGGVGKTTTSSSVAV--QLALAQPNEQFLLISTDPAHNLSD 64 (348)
T ss_dssp HTCTTCSEEEEECSTTSSHHHHHHHHHH--HHHHHCTTSCEEEEECCSSCHHHH
T ss_pred hcCCCcEEEEEeCCCCCcHHHHHHHHHH--HHHHhcCCCeEEEEECCCCCChHH
Confidence 4455578999999999999999998876 3331 2334477888775544443
No 401
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=92.59 E-value=0.06 Score=54.43 Aligned_cols=22 Identities=36% Similarity=0.511 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 042541 188 QFIVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 188 ~vv~I~G~gGiGKTtLa~~~~~ 209 (695)
.+|+|.|+.|+||||||+.++.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHH
Confidence 5899999999999999999886
No 402
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=92.56 E-value=0.088 Score=55.05 Aligned_cols=103 Identities=9% Similarity=0.065 Sum_probs=57.6
Q ss_pred HHHHHH-cCCceEEEEEcCCCCcHHHHHHHHhcccccc--------ccCCCcEEEEEeCCCC-CHHHHHHHHHHh--cC-
Q 042541 178 LKMELF-KDGRQFIVVSAPGGYGKTTLVQRLCKDDQVQ--------GKFKDDIFYVTVSKNP-NVKAIVQKVLHH--KG- 244 (695)
Q Consensus 178 l~~~L~-~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~--------~~f~~~~~wv~~~~~~-~~~~~~~~i~~~--l~- 244 (695)
.++.|. -...+-++|.|.+|+|||+|+.++++..... ++-+..++++-+++.. ...++.+++... +.
T Consensus 137 aID~l~pigrGQr~~Ifgg~G~GKt~L~~~Ia~~~~a~~~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~l~~~g~~~r 216 (464)
T 3gqb_B 137 TIDVMNTLVRGQKLPIFSGSGLPANEIAAQIARQATVRPDLSGEGEKEEPFAVVFAAMGITQRELSYFIQEFERTGALSR 216 (464)
T ss_dssp HHHTTSCCBTTCBCCEEEETTSCHHHHHHHHHHHCBCCHHHHCCCSTTCCEEEEEEEEEECHHHHHHHHHHHHHTSGGGG
T ss_pred eeecccccccCCEEEEecCCCCCchHHHHHHHHHHHhcccccccccCCCceEEEEEEecCchHHHHHHHHHhhhcccccc
Confidence 334444 2234667899999999999999998754331 1222235577777654 556666666543 10
Q ss_pred ----CCCCCCCChHH-----HHHHHHHHHHhcCCCcEEEEEeCCC
Q 042541 245 ----YPVPEFQTDEA-----AINDLERFFKQMRIEAILLVLDDVW 280 (695)
Q Consensus 245 ----~~~~~~~~~~~-----~~~~l~~~~~~l~~~~~LlVlDdv~ 280 (695)
....+.+.... ..-.+.+.+..-.++.+|+++||+-
T Consensus 217 tvvv~~t~d~p~~~r~~~~~~a~tiAEyfrd~~G~~VLl~~DdlT 261 (464)
T 3gqb_B 217 SVLFLNKADDPTIERILTPRMALTVAEYLAFEHDYHVLVILTDMT 261 (464)
T ss_dssp EEEEEEETTSCTHHHHHHHHHHHHHHHHHHHTTCCEEEEEEETHH
T ss_pred eEEEEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEcChH
Confidence 01111111111 1122334443324899999999973
No 403
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=92.55 E-value=0.077 Score=58.92 Aligned_cols=42 Identities=17% Similarity=0.234 Sum_probs=35.6
Q ss_pred CCCCCCcchHHHHHHHHHcCCceEEEEEcCCCCcHHHHHHHHhc
Q 042541 166 VISPGLDVPLKELKMELFKDGRQFIVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 166 ~~~vGr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~~~~ 209 (695)
+.++|.+..++.+...+..+ ..+.|+|++|+||||||+.++.
T Consensus 41 ~~i~G~~~~l~~l~~~i~~g--~~vll~Gp~GtGKTtlar~ia~ 82 (604)
T 3k1j_A 41 DQVIGQEHAVEVIKTAANQK--RHVLLIGEPGTGKSMLGQAMAE 82 (604)
T ss_dssp HHCCSCHHHHHHHHHHHHTT--CCEEEECCTTSSHHHHHHHHHH
T ss_pred ceEECchhhHhhccccccCC--CEEEEEeCCCCCHHHHHHHHhc
Confidence 45799888888887777655 5789999999999999999987
No 404
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=92.52 E-value=0.069 Score=52.26 Aligned_cols=24 Identities=21% Similarity=0.354 Sum_probs=21.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhc
Q 042541 186 GRQFIVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 186 ~~~vv~I~G~gGiGKTtLa~~~~~ 209 (695)
...+++|+|+.|+|||||.+.++.
T Consensus 31 ~Ge~~~liG~nGsGKSTLlk~l~G 54 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKSTFLRCINF 54 (262)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 347899999999999999999886
No 405
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=92.50 E-value=0.058 Score=54.34 Aligned_cols=23 Identities=26% Similarity=0.449 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhc
Q 042541 187 RQFIVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 187 ~~vv~I~G~gGiGKTtLa~~~~~ 209 (695)
.++|+|+|+.|+||||||..++.
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~ 62 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAA 62 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHT
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999987
No 406
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=92.48 E-value=0.062 Score=50.36 Aligned_cols=22 Identities=18% Similarity=0.555 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 042541 188 QFIVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 188 ~vv~I~G~gGiGKTtLa~~~~~ 209 (695)
++|+|.|+.|+||||+++.+..
T Consensus 3 ~~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 3 GIVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3899999999999999999876
No 407
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=92.47 E-value=0.063 Score=52.86 Aligned_cols=23 Identities=26% Similarity=0.380 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhc
Q 042541 187 RQFIVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 187 ~~vv~I~G~gGiGKTtLa~~~~~ 209 (695)
..+++|+|+.|+|||||++.+..
T Consensus 34 Ge~~~iiGpnGsGKSTLl~~l~G 56 (275)
T 3gfo_A 34 GEVTAILGGNGVGKSTLFQNFNG 56 (275)
T ss_dssp TSEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHHc
Confidence 47899999999999999999875
No 408
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=92.47 E-value=0.09 Score=54.96 Aligned_cols=103 Identities=9% Similarity=0.055 Sum_probs=57.3
Q ss_pred HHHHHH-cCCceEEEEEcCCCCcHHHHHHHHhcccccc-ccCCCcEEEEEeCCCC-CHHHHHHHHHHh--cC-----CCC
Q 042541 178 LKMELF-KDGRQFIVVSAPGGYGKTTLVQRLCKDDQVQ-GKFKDDIFYVTVSKNP-NVKAIVQKVLHH--KG-----YPV 247 (695)
Q Consensus 178 l~~~L~-~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~-~~f~~~~~wv~~~~~~-~~~~~~~~i~~~--l~-----~~~ 247 (695)
.++.|. -...+-++|.|..|+|||+|+.++.+..... ++-+..++++-+++.. ...++.+++... +. ...
T Consensus 141 aID~l~pigrGQr~~Ifgg~G~GKt~L~~~Ia~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~~~~~g~~~rtvvV~at 220 (465)
T 3vr4_D 141 AIDHLNTLVRGQKLPVFSGSGLPHKELAAQIARQATVLDSSDDFAVVFAAIGITFEEAEFFMEDFRQTGAIDRSVMFMNL 220 (465)
T ss_dssp HHHTTSCCBTTCBCCEEECTTSCHHHHHHHHHHHCBCSSCSSCEEEEEEEEEECHHHHHHHHHHHHHHTGGGGEEEEEEE
T ss_pred EEecccccccCCEEEEeCCCCcChHHHHHHHHHHHHhccCCCceEEEEEEecCCcHHHHHHHHHHhhcCCccceEEEEEC
Confidence 334444 2234557899999999999999998843331 1122235577777554 566677766553 11 011
Q ss_pred CCCCChHH-----HHHHHHHHHHhcCCCcEEEEEeCCC
Q 042541 248 PEFQTDEA-----AINDLERFFKQMRIEAILLVLDDVW 280 (695)
Q Consensus 248 ~~~~~~~~-----~~~~l~~~~~~l~~~~~LlVlDdv~ 280 (695)
.+.+.... ..-.+.+.+..-.++.+|+++||+-
T Consensus 221 sd~p~~~r~~a~~~a~tiAEyfrd~~G~~VLl~~DslT 258 (465)
T 3vr4_D 221 ANDPAIERIATPRMALTAAEYLAYEKGMHVLVIMTDMT 258 (465)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEECHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEcChH
Confidence 11111111 1122334443224899999999973
No 409
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=92.37 E-value=0.11 Score=53.43 Aligned_cols=35 Identities=20% Similarity=0.339 Sum_probs=27.2
Q ss_pred HHHHHHHHH--cCCceEEEEEcCCCCcHHHHHHHHhc
Q 042541 175 LKELKMELF--KDGRQFIVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 175 ~~~l~~~L~--~~~~~vv~I~G~gGiGKTtLa~~~~~ 209 (695)
..++...+. .+...+|+|+|.+|+|||||+..+..
T Consensus 65 ~~~~~~~~~~~~~~~~~I~i~G~~G~GKSTl~~~L~~ 101 (355)
T 3p32_A 65 AQQLLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGM 101 (355)
T ss_dssp HHHHHHHHGGGCCCSEEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHHHHHhHhhcCCceEEEEECCCCCCHHHHHHHHHH
Confidence 344455554 45678999999999999999998876
No 410
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=92.36 E-value=0.052 Score=51.04 Aligned_cols=23 Identities=26% Similarity=0.320 Sum_probs=20.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhc
Q 042541 187 RQFIVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 187 ~~vv~I~G~gGiGKTtLa~~~~~ 209 (695)
..+++|+|+.|+|||||++.++.
T Consensus 22 Ge~~~liG~nGsGKSTLl~~l~G 44 (208)
T 3b85_A 22 NTIVFGLGPAGSGKTYLAMAKAV 44 (208)
T ss_dssp CSEEEEECCTTSSTTHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 36899999999999999998875
No 411
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=92.36 E-value=0.067 Score=51.12 Aligned_cols=23 Identities=26% Similarity=0.580 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhc
Q 042541 187 RQFIVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 187 ~~vv~I~G~gGiGKTtLa~~~~~ 209 (695)
..+|+|.|++|+||||+++.+..
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999876
No 412
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=92.35 E-value=0.075 Score=51.96 Aligned_cols=24 Identities=33% Similarity=0.533 Sum_probs=21.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhc
Q 042541 186 GRQFIVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 186 ~~~vv~I~G~gGiGKTtLa~~~~~ 209 (695)
...+++|+|+.|+|||||++.++.
T Consensus 49 ~Gei~~liG~NGsGKSTLlk~l~G 72 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKSTFLRCLNL 72 (263)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHc
Confidence 357999999999999999999886
No 413
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=92.33 E-value=0.84 Score=47.07 Aligned_cols=79 Identities=10% Similarity=0.075 Sum_probs=40.7
Q ss_pred cccCCCCcEEEeccCCCCCcc--cccccccccEEeeccccCCcccccchhhhcccCCCccEEecccccccccCchh-hcC
Q 042541 597 LSALSKLKKIRLEHVSLPNSL--ATVRMNHLQKVSLVMCNVGQVFRNSTFRISDAFPNLLEMDIDYCNDLIELPDG-LCD 673 (695)
Q Consensus 597 l~~l~~L~~L~L~~~~l~~lp--~i~~l~~L~~L~l~~~~i~~~~~~~~~~l~~~l~~L~~L~l~~c~~l~~lP~~-i~~ 673 (695)
+..+.+|+.+.+.. ++..++ .+.++.+|+.+.+.++.++.+.+..+. .+++|+.+.|.. .+..++.. |.+
T Consensus 259 F~~~~~l~~i~l~~-~i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~----~c~~L~~i~lp~--~l~~I~~~aF~~ 331 (379)
T 4h09_A 259 LQNCTALKTLNFYA-KVKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFM----DCVKLSSVTLPT--ALKTIQVYAFKN 331 (379)
T ss_dssp TTTCTTCCEEEECC-CCSEECTTTTTTCTTCCEEEECCTTCCEECTTTTT----TCTTCCEEECCT--TCCEECTTTTTT
T ss_pred cceeehhccccccc-cceeccccccccccccccccccccccceehhhhhc----CCCCCCEEEcCc--cccEEHHHHhhC
Confidence 34445555555532 244444 455556666666655555555555554 555566665542 24444432 445
Q ss_pred CCCCceeec
Q 042541 674 IVSMEKLRI 682 (695)
Q Consensus 674 L~~L~~L~l 682 (695)
+.+|+.+.+
T Consensus 332 C~~L~~i~i 340 (379)
T 4h09_A 332 CKALSTISY 340 (379)
T ss_dssp CTTCCCCCC
T ss_pred CCCCCEEEE
Confidence 555555554
No 414
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=92.32 E-value=0.071 Score=49.88 Aligned_cols=36 Identities=22% Similarity=0.230 Sum_probs=21.0
Q ss_pred HHHHHHHHHcCCceEEEEEcCCCCcHHHHHHHHhcc
Q 042541 175 LKELKMELFKDGRQFIVVSAPGGYGKTTLVQRLCKD 210 (695)
Q Consensus 175 ~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~~~~~ 210 (695)
.+.+.........--|+|+|.+|+|||||+..+.+.
T Consensus 18 ~~~m~~~~~~~~~~ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 18 GSHMENLYFQGQAIKCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp ------------CEEEEEEESTTSSHHHHHHHHHHS
T ss_pred hhHHHhHhhcCCeEEEEEECcCCCCHHHHHHHHHhC
Confidence 344434343444567899999999999999888764
No 415
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=92.32 E-value=0.082 Score=51.12 Aligned_cols=24 Identities=29% Similarity=0.483 Sum_probs=21.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhc
Q 042541 186 GRQFIVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 186 ~~~vv~I~G~gGiGKTtLa~~~~~ 209 (695)
...+++|+|+.|+|||||.+.++.
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~G 50 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTIFSLLER 50 (243)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 357999999999999999999875
No 416
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=92.31 E-value=0.27 Score=52.16 Aligned_cols=102 Identities=15% Similarity=0.214 Sum_probs=58.5
Q ss_pred HHHHHHH-cCCceEEEEEcCCCCcHHHHH-HHHhccccc----cccCCCcEEEEEeCCCC-CHHHHHHHHHHhcCC----
Q 042541 177 ELKMELF-KDGRQFIVVSAPGGYGKTTLV-QRLCKDDQV----QGKFKDDIFYVTVSKNP-NVKAIVQKVLHHKGY---- 245 (695)
Q Consensus 177 ~l~~~L~-~~~~~vv~I~G~gGiGKTtLa-~~~~~~~~~----~~~f~~~~~wv~~~~~~-~~~~~~~~i~~~l~~---- 245 (695)
+.++.+. -...+-++|.|..|+|||+|| ..+.+.... .++-+..++++-+++.. ...++.+.+...=..
T Consensus 151 raID~l~PigrGQR~~I~g~~g~GKT~Lal~~I~~q~~~~~~~~~~~d~~~V~~~IGeR~~Ev~~~~~~~~~~g~m~~tv 230 (510)
T 2ck3_A 151 KAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTI 230 (510)
T ss_dssp HHHHHHSCCBTTCBCEEEESTTSSHHHHHHHHHHHTHHHHTSCCTTTCCEEEEEEESCCHHHHHHHHHHHHHTTCGGGEE
T ss_pred eeeccccccccCCEEEEecCCCCCchHHHHHHHHHHHhhccccccCCCeEEEEEECCCCcHHHHHHHHHHHhcCCcccce
Confidence 3445555 334567899999999999995 466663221 01234336688888765 456677777653111
Q ss_pred ---CCCCCCChHH-----HHHHHHHHHHhcCCCcEEEEEeCC
Q 042541 246 ---PVPEFQTDEA-----AINDLERFFKQMRIEAILLVLDDV 279 (695)
Q Consensus 246 ---~~~~~~~~~~-----~~~~l~~~~~~l~~~~~LlVlDdv 279 (695)
...+.+.... ..-.+.+.+.. .++.+|+++||+
T Consensus 231 vV~atad~p~~~r~~a~~~a~tiAEyfrd-~G~dVLli~Dsl 271 (510)
T 2ck3_A 231 VVSATASDAAPLQYLAPYSGCSMGEYFRD-NGKHALIIYDDL 271 (510)
T ss_dssp EEEECTTSCHHHHHHHHHHHHHHHHHHHT-TTCEEEEEEETH
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHHHHHH-cCCcEEEEEcCH
Confidence 1111111111 12234444433 699999999997
No 417
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=92.30 E-value=0.072 Score=52.99 Aligned_cols=23 Identities=26% Similarity=0.439 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhc
Q 042541 187 RQFIVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 187 ~~vv~I~G~gGiGKTtLa~~~~~ 209 (695)
.++|+|+|+.|+||||||..++.
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~ 25 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAK 25 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCcCCHHHHHHHHHH
Confidence 46899999999999999999886
No 418
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=92.26 E-value=0.07 Score=52.33 Aligned_cols=23 Identities=30% Similarity=0.595 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhc
Q 042541 187 RQFIVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 187 ~~vv~I~G~gGiGKTtLa~~~~~ 209 (695)
..+++|+|+.|+|||||++.+..
T Consensus 37 Ge~~~liG~nGsGKSTLl~~l~G 59 (266)
T 4g1u_C 37 GEMVAIIGPNGAGKSTLLRLLTG 59 (266)
T ss_dssp TCEEEEECCTTSCHHHHHHHHTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhc
Confidence 47899999999999999999986
No 419
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=92.24 E-value=0.072 Score=53.47 Aligned_cols=23 Identities=30% Similarity=0.381 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhc
Q 042541 187 RQFIVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 187 ~~vv~I~G~gGiGKTtLa~~~~~ 209 (695)
.++|.|+|+.|+||||||+.++.
T Consensus 5 ~~~i~i~GptGsGKTtla~~La~ 27 (323)
T 3crm_A 5 PPAIFLMGPTAAGKTDLAMALAD 27 (323)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999886
No 420
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=92.24 E-value=0.07 Score=51.47 Aligned_cols=23 Identities=26% Similarity=0.414 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhc
Q 042541 187 RQFIVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 187 ~~vv~I~G~gGiGKTtLa~~~~~ 209 (695)
..+++|+|+.|+|||||.+.++.
T Consensus 32 Ge~~~l~G~nGsGKSTLl~~l~G 54 (240)
T 1ji0_A 32 GQIVTLIGANGAGKTTTLSAIAG 54 (240)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 46899999999999999999986
No 421
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=92.18 E-value=0.073 Score=50.92 Aligned_cols=23 Identities=30% Similarity=0.479 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhc
Q 042541 187 RQFIVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 187 ~~vv~I~G~gGiGKTtLa~~~~~ 209 (695)
..+++|+|+.|+|||||.+.++.
T Consensus 34 Ge~~~i~G~nGsGKSTLl~~l~G 56 (229)
T 2pze_A 34 GQLLAVAGSTGAGKTSLLMMIMG 56 (229)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 46899999999999999999986
No 422
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=92.18 E-value=0.062 Score=50.74 Aligned_cols=23 Identities=30% Similarity=0.579 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhc
Q 042541 187 RQFIVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 187 ~~vv~I~G~gGiGKTtLa~~~~~ 209 (695)
..+++|+|+.|+|||||.+.++.
T Consensus 35 Ge~~~iiG~NGsGKSTLlk~l~G 57 (214)
T 1sgw_A 35 GNVVNFHGPNGIGKTTLLKTIST 57 (214)
T ss_dssp TCCEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 46899999999999999999875
No 423
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=92.17 E-value=0.22 Score=46.65 Aligned_cols=50 Identities=18% Similarity=0.391 Sum_probs=33.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCCCCCHHHHHHHHHH
Q 042541 188 QFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSKNPNVKAIVQKVLH 241 (695)
Q Consensus 188 ~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~~~~~~~~~~~i~~ 241 (695)
+.|+|-|.-|+||||+++.+.+ .+...++ ++...-.......+.+++++.
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~--~L~~~~~--v~~~~eP~~t~~g~~ir~~l~ 52 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYH--RLVKDYD--VIMTREPGGVPTGEEIRKIVL 52 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH--HHTTTSC--EEEEESSTTCHHHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHHH--HHHCCCC--EEEeeCCCCChHHHHHHHHHh
Confidence 5789999999999999999987 4444443 444444444444455555554
No 424
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=92.16 E-value=0.072 Score=52.00 Aligned_cols=23 Identities=26% Similarity=0.530 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhc
Q 042541 187 RQFIVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 187 ~~vv~I~G~gGiGKTtLa~~~~~ 209 (695)
..+++|+|+.|+|||||.+.++.
T Consensus 33 Ge~~~liG~nGsGKSTLlk~l~G 55 (257)
T 1g6h_A 33 GDVTLIIGPNGSGKSTLINVITG 55 (257)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 46899999999999999999876
No 425
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=92.15 E-value=0.073 Score=50.71 Aligned_cols=21 Identities=29% Similarity=0.327 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 042541 189 FIVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 189 vv~I~G~gGiGKTtLa~~~~~ 209 (695)
.|.|.|+.|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999876
No 426
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=92.12 E-value=0.17 Score=51.27 Aligned_cols=52 Identities=23% Similarity=0.318 Sum_probs=35.9
Q ss_pred HHHcCCceEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCCCCCHHHH
Q 042541 181 ELFKDGRQFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSKNPNVKAI 235 (695)
Q Consensus 181 ~L~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~~~~~~~~ 235 (695)
.+.+...+++.+.|-||+||||+|..++. ..... ..+++-|+.....+....
T Consensus 10 ~l~~~~~~i~~~sgkGGvGKTt~a~~lA~--~la~~-g~~vllid~D~~~~l~~~ 61 (334)
T 3iqw_A 10 ILDQRSLRWIFVGGKGGVGKTTTSCSLAI--QLAKV-RRSVLLLSTDPAHNLSDA 61 (334)
T ss_dssp HHHCTTCCEEEEECSTTSSHHHHHHHHHH--HHTTS-SSCEEEEECCSSCHHHHH
T ss_pred HhcCCCeEEEEEeCCCCccHHHHHHHHHH--HHHhC-CCcEEEEECCCCCChhHH
Confidence 34455578899999999999999988876 33322 334778887755544433
No 427
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=92.10 E-value=0.084 Score=51.41 Aligned_cols=24 Identities=25% Similarity=0.403 Sum_probs=21.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhc
Q 042541 186 GRQFIVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 186 ~~~vv~I~G~gGiGKTtLa~~~~~ 209 (695)
...+++|+|+.|+|||||.+.++.
T Consensus 40 ~Gei~~l~G~NGsGKSTLlk~l~G 63 (256)
T 1vpl_A 40 EGEIFGLIGPNGAGKTTTLRIIST 63 (256)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHhc
Confidence 347899999999999999999876
No 428
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=92.09 E-value=0.043 Score=54.65 Aligned_cols=24 Identities=21% Similarity=0.362 Sum_probs=18.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhc
Q 042541 186 GRQFIVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 186 ~~~vv~I~G~gGiGKTtLa~~~~~ 209 (695)
...+|+|.|+.|+||||+|+.+.+
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999876
No 429
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=92.07 E-value=0.12 Score=52.12 Aligned_cols=39 Identities=13% Similarity=0.200 Sum_probs=28.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeC
Q 042541 186 GRQFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVS 227 (695)
Q Consensus 186 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~ 227 (695)
...+|+|+|.+|+||||++..++. ..... ...++++...
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~--~l~~~-g~kVllid~D 142 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMAN--YYAEL-GYKVLIAAAD 142 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHH--HHHHT-TCCEEEEECC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH--HHHHC-CCeEEEEeCC
Confidence 358999999999999999998886 33322 3346666654
No 430
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=92.05 E-value=0.076 Score=51.46 Aligned_cols=23 Identities=26% Similarity=0.414 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhc
Q 042541 187 RQFIVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 187 ~~vv~I~G~gGiGKTtLa~~~~~ 209 (695)
..+++|+|+.|+|||||++.++.
T Consensus 35 Ge~~~i~G~nGsGKSTLl~~l~G 57 (247)
T 2ff7_A 35 GEVIGIVGRSGSGKSTLTKLIQR 57 (247)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 46899999999999999999876
No 431
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=92.05 E-value=0.2 Score=53.41 Aligned_cols=42 Identities=19% Similarity=0.242 Sum_probs=28.6
Q ss_pred CCCCCcchHHHHHH----HHHcCCceEEEEEcCCCCcHHHHHHHHhc
Q 042541 167 ISPGLDVPLKELKM----ELFKDGRQFIVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 167 ~~vGr~~~~~~l~~----~L~~~~~~vv~I~G~gGiGKTtLa~~~~~ 209 (695)
.|-+-..+-++.+. .+..++ +.+.|.|.+|+||||++..+..
T Consensus 22 ~~~~Ln~~Q~~av~~~~~~i~~~~-~~~li~G~aGTGKT~ll~~~~~ 67 (459)
T 3upu_A 22 TFDDLTEGQKNAFNIVMKAIKEKK-HHVTINGPAGTGATTLTKFIIE 67 (459)
T ss_dssp CSSCCCHHHHHHHHHHHHHHHSSS-CEEEEECCTTSCHHHHHHHHHH
T ss_pred ccccCCHHHHHHHHHHHHHHhcCC-CEEEEEeCCCCCHHHHHHHHHH
Confidence 34444444444444 333333 4899999999999999998877
No 432
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=92.03 E-value=0.075 Score=48.71 Aligned_cols=22 Identities=41% Similarity=0.569 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 042541 189 FIVVSAPGGYGKTTLVQRLCKD 210 (695)
Q Consensus 189 vv~I~G~gGiGKTtLa~~~~~~ 210 (695)
-|+|+|.+|+|||||+..+...
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999998863
No 433
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=92.03 E-value=0.083 Score=52.43 Aligned_cols=24 Identities=33% Similarity=0.342 Sum_probs=21.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhc
Q 042541 186 GRQFIVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 186 ~~~vv~I~G~gGiGKTtLa~~~~~ 209 (695)
..++|.|+|+.|+||||||..++.
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~ 32 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRK 32 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEECCCccCHHHHHHHHHH
Confidence 357899999999999999999986
No 434
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=92.02 E-value=0.59 Score=48.61 Aligned_cols=118 Identities=11% Similarity=0.120 Sum_probs=81.8
Q ss_pred CCCCceEEEEEEccCccccCC-hhhcCCCCCcEEEEcccCCCCcccCcccccccCCCCcEEEeccCCCCCcc--cccccc
Q 042541 547 MQGPEVKVVVLNIRTKKYVLP-DFLQKMDELKVLIVTNYGFSPAELNNFRVLSALSKLKKIRLEHVSLPNSL--ATVRMN 623 (695)
Q Consensus 547 ~~~~~l~~L~l~~~~~~~~~p-~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~lp--~i~~l~ 623 (695)
..++.++.+.+... .++ ..+..+.+|..+.+.++ . ..+.. ..+..+.+|+.+.+.. +++.++ ++.++.
T Consensus 273 ~~~~~l~~~~~~~~----~i~~~~F~~~~~L~~i~l~~~-i--~~I~~-~aF~~c~~L~~i~lp~-~v~~I~~~aF~~c~ 343 (394)
T 4fs7_A 273 YNCSGLKKVIYGSV----IVPEKTFYGCSSLTEVKLLDS-V--KFIGE-EAFESCTSLVSIDLPY-LVEEIGKRSFRGCT 343 (394)
T ss_dssp TTCTTCCEEEECSS----EECTTTTTTCTTCCEEEECTT-C--CEECT-TTTTTCTTCCEECCCT-TCCEECTTTTTTCT
T ss_pred ccccccceeccCce----eeccccccccccccccccccc-c--ceech-hhhcCCCCCCEEEeCC-cccEEhHHhccCCC
Confidence 35666666655332 233 35778899999988653 1 11111 1267888999999964 477887 888999
Q ss_pred cccEEeeccccCCcccccchhhhcccCCCccEEecccccccccCchhhcCCCCCcee
Q 042541 624 HLQKVSLVMCNVGQVFRNSTFRISDAFPNLLEMDIDYCNDLIELPDGLCDIVSMEKL 680 (695)
Q Consensus 624 ~L~~L~l~~~~i~~~~~~~~~~l~~~l~~L~~L~l~~c~~l~~lP~~i~~L~~L~~L 680 (695)
+|+.+.+..+ ++.+....+. .+++|+.+++.. .+..+...+.+.++|+.+
T Consensus 344 ~L~~i~lp~~-l~~I~~~aF~----~C~~L~~i~lp~--~~~~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 344 SLSNINFPLS-LRKIGANAFQ----GCINLKKVELPK--RLEQYRYDFEDTTKFKWI 393 (394)
T ss_dssp TCCEECCCTT-CCEECTTTBT----TCTTCCEEEEEG--GGGGGGGGBCTTCEEEEE
T ss_pred CCCEEEECcc-ccEehHHHhh----CCCCCCEEEECC--CCEEhhheecCCCCCcEE
Confidence 9999999776 7777777776 899999999875 355555556666666543
No 435
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=92.01 E-value=0.085 Score=51.53 Aligned_cols=24 Identities=21% Similarity=0.310 Sum_probs=21.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhc
Q 042541 186 GRQFIVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 186 ~~~vv~I~G~gGiGKTtLa~~~~~ 209 (695)
...+++|+|+.|+|||||++.+..
T Consensus 45 ~Ge~~~i~G~nGsGKSTLl~~l~G 68 (260)
T 2ghi_A 45 SGTTCALVGHTGSGKSTIAKLLYR 68 (260)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 347899999999999999999986
No 436
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=92.01 E-value=0.088 Score=53.91 Aligned_cols=23 Identities=30% Similarity=0.432 Sum_probs=21.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhc
Q 042541 187 RQFIVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 187 ~~vv~I~G~gGiGKTtLa~~~~~ 209 (695)
..+++|+|+.|+||||+++.++.
T Consensus 157 g~vi~lvG~nGsGKTTll~~Lag 179 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSLGKLAH 179 (359)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHh
Confidence 57999999999999999999887
No 437
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=91.99 E-value=0.076 Score=50.33 Aligned_cols=22 Identities=23% Similarity=0.292 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 042541 188 QFIVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 188 ~vv~I~G~gGiGKTtLa~~~~~ 209 (695)
..|.|.|+.|+||||+|+.+..
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999876
No 438
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=91.99 E-value=0.074 Score=50.22 Aligned_cols=21 Identities=24% Similarity=0.154 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 042541 189 FIVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 189 vv~I~G~gGiGKTtLa~~~~~ 209 (695)
.|+|.|+.|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999876
No 439
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=91.98 E-value=0.11 Score=49.94 Aligned_cols=47 Identities=21% Similarity=0.282 Sum_probs=31.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCCCCCHHHHHHH
Q 042541 187 RQFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSKNPNVKAIVQK 238 (695)
Q Consensus 187 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~~~~~~~~~~~ 238 (695)
..++.|.|++|+||||||..++.. .... ...++|++.... ...+...
T Consensus 23 G~~~~i~G~~GsGKTtl~~~~~~~--~~~~-~~~v~~~~~e~~--~~~~~~~ 69 (247)
T 2dr3_A 23 RNVVLLSGGPGTGKTIFSQQFLWN--GLKM-GEPGIYVALEEH--PVQVRQN 69 (247)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHH--HHHT-TCCEEEEESSSC--HHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH--HHhc-CCeEEEEEccCC--HHHHHHH
Confidence 468999999999999999877652 2111 334778876553 3444433
No 440
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=91.98 E-value=0.078 Score=51.51 Aligned_cols=23 Identities=30% Similarity=0.421 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhc
Q 042541 187 RQFIVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 187 ~~vv~I~G~gGiGKTtLa~~~~~ 209 (695)
..+++|+|+.|+|||||++.++.
T Consensus 29 Ge~~~l~G~nGsGKSTLlk~l~G 51 (250)
T 2d2e_A 29 GEVHALMGPNGAGKSTLGKILAG 51 (250)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 46899999999999999999986
No 441
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=91.94 E-value=0.087 Score=51.80 Aligned_cols=24 Identities=25% Similarity=0.393 Sum_probs=21.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhc
Q 042541 186 GRQFIVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 186 ~~~vv~I~G~gGiGKTtLa~~~~~ 209 (695)
...+++|+|+.|+|||||++.++.
T Consensus 44 ~Ge~~~i~G~nGsGKSTLlk~l~G 67 (271)
T 2ixe_A 44 PGKVTALVGPNGSGKSTVAALLQN 67 (271)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 357899999999999999999876
No 442
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=91.91 E-value=0.09 Score=51.61 Aligned_cols=24 Identities=29% Similarity=0.443 Sum_probs=21.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhc
Q 042541 186 GRQFIVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 186 ~~~vv~I~G~gGiGKTtLa~~~~~ 209 (695)
...+++|+|+.|+|||||++.++.
T Consensus 45 ~Ge~~~l~G~NGsGKSTLlk~l~G 68 (267)
T 2zu0_C 45 PGEVHAIMGPNGSGKSTLSATLAG 68 (267)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 347899999999999999999986
No 443
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=91.86 E-value=0.085 Score=52.79 Aligned_cols=22 Identities=23% Similarity=0.344 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 042541 188 QFIVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 188 ~vv~I~G~gGiGKTtLa~~~~~ 209 (695)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999876
No 444
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=91.85 E-value=0.084 Score=51.16 Aligned_cols=23 Identities=30% Similarity=0.616 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhc
Q 042541 187 RQFIVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 187 ~~vv~I~G~gGiGKTtLa~~~~~ 209 (695)
..+++|+|+.|+|||||.+.++.
T Consensus 26 Ge~~~liG~NGsGKSTLlk~l~G 48 (249)
T 2qi9_C 26 GEILHLVGPNGAGKSTLLARMAG 48 (249)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCcHHHHHHHHhC
Confidence 46899999999999999999986
No 445
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=91.84 E-value=0.082 Score=48.86 Aligned_cols=24 Identities=25% Similarity=0.459 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcc
Q 042541 187 RQFIVVSAPGGYGKTTLVQRLCKD 210 (695)
Q Consensus 187 ~~vv~I~G~gGiGKTtLa~~~~~~ 210 (695)
.-.|+|+|..|+|||||++.+...
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 357899999999999999998764
No 446
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=91.84 E-value=0.12 Score=49.22 Aligned_cols=23 Identities=39% Similarity=0.638 Sum_probs=18.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhc
Q 042541 187 RQFIVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 187 ~~vv~I~G~gGiGKTtLa~~~~~ 209 (695)
...|.|.|+.|+||||+++.+.+
T Consensus 25 g~~I~~eG~~GsGKsT~~~~l~~ 47 (227)
T 3v9p_A 25 GKFITFEGIDGAGKTTHLQWFCD 47 (227)
T ss_dssp CCEEEEECCC---CHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999987
No 447
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=91.82 E-value=0.27 Score=51.96 Aligned_cols=97 Identities=16% Similarity=0.184 Sum_probs=57.0
Q ss_pred HHHHHH-cCCceEEEEEcCCCCcHHHHH-HHHhccccccccCCCcEEEEEeCCCC-CHHHHHHHHHHhcCCC-------C
Q 042541 178 LKMELF-KDGRQFIVVSAPGGYGKTTLV-QRLCKDDQVQGKFKDDIFYVTVSKNP-NVKAIVQKVLHHKGYP-------V 247 (695)
Q Consensus 178 l~~~L~-~~~~~vv~I~G~gGiGKTtLa-~~~~~~~~~~~~f~~~~~wv~~~~~~-~~~~~~~~i~~~l~~~-------~ 247 (695)
.++.+. -...+-++|.|..|+|||+|| ..+.+. . .-+..++++-+++.. ...++.+.+...=... .
T Consensus 152 aID~l~PigrGQR~~Ifg~~g~GKT~Lal~~I~~~--~--~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~~tvvV~at 227 (502)
T 2qe7_A 152 AIDSMIPIGRGQRELIIGDRQTGKTTIAIDTIINQ--K--GQDVICIYVAIGQKQSTVAGVVETLRQHDALDYTIVVTAS 227 (502)
T ss_dssp HHHHSSCCBTTCBCEEEECSSSCHHHHHHHHHHGG--G--SCSEEEEEEEESCCHHHHHHHHHHHHHTTCSTTEEEEEEC
T ss_pred ecccccccccCCEEEEECCCCCCchHHHHHHHHHh--h--cCCcEEEEEECCCcchHHHHHHHHHhhCCCcceeEEEEEC
Confidence 345544 233567899999999999996 466663 2 233224677788765 4566777776532111 1
Q ss_pred CCCCChHH-----HHHHHHHHHHhcCCCcEEEEEeCC
Q 042541 248 PEFQTDEA-----AINDLERFFKQMRIEAILLVLDDV 279 (695)
Q Consensus 248 ~~~~~~~~-----~~~~l~~~~~~l~~~~~LlVlDdv 279 (695)
.+.+.... ..-.+.+.+.. .++.+|+++||+
T Consensus 228 ad~p~~~r~~a~~~a~tiAEyfrd-~G~dVLl~~Dsl 263 (502)
T 2qe7_A 228 ASEPAPLLYLAPYAGCAMGEYFMY-KGKHALVVYDDL 263 (502)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHT-TTCEEEEEEECH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHH-cCCcEEEEEecH
Confidence 11111111 11234444533 699999999997
No 448
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=91.76 E-value=0.1 Score=50.99 Aligned_cols=25 Identities=28% Similarity=0.504 Sum_probs=22.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhc
Q 042541 185 DGRQFIVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 185 ~~~~vv~I~G~gGiGKTtLa~~~~~ 209 (695)
....+++|+|+.|+|||||++.+..
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll~~l~g 47 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTIASMID 47 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHHHHHHH
T ss_pred CCCCEEEEECCCCccHHHHHHHHHH
Confidence 4458999999999999999998876
No 449
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=91.74 E-value=0.096 Score=50.22 Aligned_cols=23 Identities=35% Similarity=0.398 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhc
Q 042541 187 RQFIVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 187 ~~vv~I~G~gGiGKTtLa~~~~~ 209 (695)
...|.|.|+.|+||||+|+.+.+
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999986
No 450
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=91.73 E-value=0.25 Score=46.55 Aligned_cols=23 Identities=30% Similarity=0.505 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhc
Q 042541 187 RQFIVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 187 ~~vv~I~G~gGiGKTtLa~~~~~ 209 (695)
...|+|.|+.|+||||+++.+.+
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~ 28 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAE 28 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHH
Confidence 46899999999999999999987
No 451
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=91.73 E-value=0.092 Score=52.40 Aligned_cols=25 Identities=20% Similarity=0.344 Sum_probs=22.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhc
Q 042541 185 DGRQFIVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 185 ~~~~vv~I~G~gGiGKTtLa~~~~~ 209 (695)
+...+++|+|+.|+|||||++.+..
T Consensus 124 ~~Ge~vaIvGpsGsGKSTLl~lL~g 148 (305)
T 2v9p_A 124 PKKNCLAFIGPPNTGKSMLCNSLIH 148 (305)
T ss_dssp TTCSEEEEECSSSSSHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhh
Confidence 4457999999999999999999876
No 452
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=91.72 E-value=0.096 Score=51.38 Aligned_cols=23 Identities=30% Similarity=0.483 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhc
Q 042541 187 RQFIVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 187 ~~vv~I~G~gGiGKTtLa~~~~~ 209 (695)
..+++|+|+.|+|||||.+.++.
T Consensus 33 Ge~~~liG~nGsGKSTLl~~i~G 55 (266)
T 2yz2_A 33 GECLLVAGNTGSGKSTLLQIVAG 55 (266)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCcHHHHHHHHhC
Confidence 47899999999999999999875
No 453
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=91.71 E-value=0.088 Score=49.39 Aligned_cols=21 Identities=43% Similarity=0.631 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 042541 189 FIVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 189 vv~I~G~gGiGKTtLa~~~~~ 209 (695)
+|.|.|++|+||+|.|+.++.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~ 22 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAK 22 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999998876
No 454
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=91.66 E-value=0.1 Score=46.84 Aligned_cols=23 Identities=22% Similarity=0.258 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcc
Q 042541 188 QFIVVSAPGGYGKTTLVQRLCKD 210 (695)
Q Consensus 188 ~vv~I~G~gGiGKTtLa~~~~~~ 210 (695)
..|+|+|.+|+|||||...+...
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999998763
No 455
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=91.65 E-value=0.09 Score=51.10 Aligned_cols=23 Identities=30% Similarity=0.459 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhc
Q 042541 187 RQFIVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 187 ~~vv~I~G~gGiGKTtLa~~~~~ 209 (695)
..+++|+|+.|+|||||.+.++.
T Consensus 31 Ge~~~l~G~nGsGKSTLl~~l~G 53 (253)
T 2nq2_C 31 GDILAVLGQNGCGKSTLLDLLLG 53 (253)
T ss_dssp TCEEEEECCSSSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 46899999999999999999886
No 456
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=91.64 E-value=0.09 Score=51.93 Aligned_cols=23 Identities=30% Similarity=0.313 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhc
Q 042541 187 RQFIVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 187 ~~vv~I~G~gGiGKTtLa~~~~~ 209 (695)
..+++|+|+.|+|||||.+.++.
T Consensus 47 Ge~~~liG~NGsGKSTLlk~l~G 69 (279)
T 2ihy_A 47 GDKWILYGLNGAGKTTLLNILNA 69 (279)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCcHHHHHHHHhC
Confidence 46899999999999999999986
No 457
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=91.63 E-value=0.097 Score=48.25 Aligned_cols=23 Identities=17% Similarity=0.316 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhc
Q 042541 187 RQFIVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 187 ~~vv~I~G~gGiGKTtLa~~~~~ 209 (695)
.+.|.|.|+.|+||||||..+..
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~ 56 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQ 56 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHT
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 46789999999999999999876
No 458
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=91.63 E-value=0.092 Score=50.25 Aligned_cols=24 Identities=25% Similarity=0.299 Sum_probs=21.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhc
Q 042541 186 GRQFIVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 186 ~~~vv~I~G~gGiGKTtLa~~~~~ 209 (695)
...+|+|.|+.|+||||+++.+..
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L~~ 42 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHFEK 42 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHh
Confidence 357999999999999999999886
No 459
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=91.59 E-value=0.13 Score=47.90 Aligned_cols=86 Identities=17% Similarity=0.089 Sum_probs=47.7
Q ss_pred eEEEEE-cCCCCcHHHHHHHHhccccccccCCCcEEEEEeCCCCCHHHHHHHHHHhcCCCCCCCCChHHHHHHHHHHHHh
Q 042541 188 QFIVVS-APGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSKNPNVKAIVQKVLHHKGYPVPEFQTDEAAINDLERFFKQ 266 (695)
Q Consensus 188 ~vv~I~-G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~~ 266 (695)
++|+|+ +-||+||||+|..++. .... ...+++.++.....+....+. .......-.......+.+.++.
T Consensus 2 ~vi~v~s~kgG~GKTt~a~~la~--~la~-~g~~vlliD~D~~~~~~~~~~-------~~~~~~~~~~~~~~~l~~~l~~ 71 (206)
T 4dzz_A 2 KVISFLNPKGGSGKTTAVINIAT--ALSR-SGYNIAVVDTDPQMSLTNWSK-------AGKAAFDVFTAASEKDVYGIRK 71 (206)
T ss_dssp EEEEECCSSTTSSHHHHHHHHHH--HHHH-TTCCEEEEECCTTCHHHHHHT-------TSCCSSEEEECCSHHHHHTHHH
T ss_pred eEEEEEeCCCCccHHHHHHHHHH--HHHH-CCCeEEEEECCCCCCHHHHHh-------cCCCCCcEEecCcHHHHHHHHH
Confidence 577887 6899999999998876 3332 233478888875554443322 1111000000000345555555
Q ss_pred cCCCcEEEEEeCCCCCC
Q 042541 267 MRIEAILLVLDDVWPGS 283 (695)
Q Consensus 267 l~~~~~LlVlDdv~~~~ 283 (695)
++++-=++|+|---...
T Consensus 72 l~~~yD~viiD~~~~~~ 88 (206)
T 4dzz_A 72 DLADYDFAIVDGAGSLS 88 (206)
T ss_dssp HTTTSSEEEEECCSSSS
T ss_pred hcCCCCEEEEECCCCCC
Confidence 55554578888754443
No 460
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=91.58 E-value=0.098 Score=51.06 Aligned_cols=23 Identities=30% Similarity=0.466 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhc
Q 042541 187 RQFIVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 187 ~~vv~I~G~gGiGKTtLa~~~~~ 209 (695)
..++.+.|.||+||||++..++.
T Consensus 14 ~~i~~~~GkgGvGKTTl~~~La~ 36 (262)
T 1yrb_A 14 SMIVVFVGTAGSGKTTLTGEFGR 36 (262)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEEeCCCCCCHHHHHHHHHH
Confidence 57889999999999999999886
No 461
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=91.48 E-value=0.17 Score=47.39 Aligned_cols=108 Identities=15% Similarity=0.185 Sum_probs=52.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCCCCCHHHHHHHHHHhcCCCCCC--CCChHHHHHHHHHHH
Q 042541 187 RQFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSKNPNVKAIVQKVLHHKGYPVPE--FQTDEAAINDLERFF 264 (695)
Q Consensus 187 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~--~~~~~~~~~~l~~~~ 264 (695)
..+..++|.-|.||||.+...+.. ...+-.. ++.+....+. ..-...+...++..... .... ..++
T Consensus 28 G~l~vitG~MgsGKTT~lL~~a~r--~~~~g~k-Vli~k~~~d~--R~ge~~i~s~~g~~~~a~~~~~~-------~~~~ 95 (214)
T 2j9r_A 28 GWIEVICGSMFSGKSEELIRRVRR--TQFAKQH-AIVFKPCIDN--RYSEEDVVSHNGLKVKAVPVSAS-------KDIF 95 (214)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHH--HHHTTCC-EEEEECC-------------------CCEEECSSG-------GGGG
T ss_pred CEEEEEECCCCCcHHHHHHHHHHH--HHHCCCE-EEEEEeccCC--cchHHHHHhhcCCeeEEeecCCH-------HHHH
Confidence 478899999999999999877763 3222222 5455433221 11122344444332221 1111 1223
Q ss_pred HhcCCCcEEEEEeCCCCCChHHHhhhcc-CCCCCEEEEEcCCC
Q 042541 265 KQMRIEAILLVLDDVWPGSESLLQKLGF-QLPDYKILVTSRSE 306 (695)
Q Consensus 265 ~~l~~~~~LlVlDdv~~~~~~~~~~l~~-~~~gs~iivTtR~~ 306 (695)
+.+.++--+|++|.+.-.....++.+.. ...|..||+|-++.
T Consensus 96 ~~~~~~~dvViIDEaQF~~~~~V~~l~~l~~~~~~Vi~~Gl~~ 138 (214)
T 2j9r_A 96 KHITEEMDVIAIDEVQFFDGDIVEVVQVLANRGYRVIVAGLDQ 138 (214)
T ss_dssp GGCCSSCCEEEECCGGGSCTTHHHHHHHHHHTTCEEEEEECSB
T ss_pred HHHhcCCCEEEEECcccCCHHHHHHHHHHhhCCCEEEEEeccc
Confidence 3334434499999986543332333322 12478999998854
No 462
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=91.42 E-value=1.1 Score=46.00 Aligned_cols=109 Identities=12% Similarity=0.085 Sum_probs=73.9
Q ss_pred CCCCceEEEEEEccCccccCC-hhhcCCCCCcEEEEcccCCCCcccCcccccccCCCCcEEEeccCCCCCcc--cccccc
Q 042541 547 MQGPEVKVVVLNIRTKKYVLP-DFLQKMDELKVLIVTNYGFSPAELNNFRVLSALSKLKKIRLEHVSLPNSL--ATVRMN 623 (695)
Q Consensus 547 ~~~~~l~~L~l~~~~~~~~~p-~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~lp--~i~~l~ 623 (695)
..+..|+.+.+..+ ...++ ..+.++.+|..+.+..+ . ..+. ...+..+.+|+.+.+.++.++.++ .+.++.
T Consensus 237 ~~~~~L~~i~lp~~--v~~I~~~aF~~~~~l~~i~l~~~-i--~~i~-~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~ 310 (379)
T 4h09_A 237 YGMKALDEIAIPKN--VTSIGSFLLQNCTALKTLNFYAK-V--KTVP-YLLCSGCSNLTKVVMDNSAIETLEPRVFMDCV 310 (379)
T ss_dssp TTCSSCCEEEECTT--CCEECTTTTTTCTTCCEEEECCC-C--SEEC-TTTTTTCTTCCEEEECCTTCCEECTTTTTTCT
T ss_pred cCCccceEEEcCCC--ccEeCccccceeehhcccccccc-c--eecc-ccccccccccccccccccccceehhhhhcCCC
Confidence 35667777766443 22232 35777888888888542 1 1111 122678899999999998899888 888999
Q ss_pred cccEEeeccccCCcccccchhhhcccCCCccEEecccccccccCc
Q 042541 624 HLQKVSLVMCNVGQVFRNSTFRISDAFPNLLEMDIDYCNDLIELP 668 (695)
Q Consensus 624 ~L~~L~l~~~~i~~~~~~~~~~l~~~l~~L~~L~l~~c~~l~~lP 668 (695)
+|+.+.|..+ ++.+....|. ++++|+.+.+.. .+..+.
T Consensus 311 ~L~~i~lp~~-l~~I~~~aF~----~C~~L~~i~ip~--~v~~I~ 348 (379)
T 4h09_A 311 KLSSVTLPTA-LKTIQVYAFK----NCKALSTISYPK--SITLIE 348 (379)
T ss_dssp TCCEEECCTT-CCEECTTTTT----TCTTCCCCCCCT--TCCEEC
T ss_pred CCCEEEcCcc-ccEEHHHHhh----CCCCCCEEEECC--ccCEEc
Confidence 9999999654 6777776665 778888777753 244443
No 463
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=91.35 E-value=0.092 Score=48.80 Aligned_cols=23 Identities=26% Similarity=0.511 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcc
Q 042541 188 QFIVVSAPGGYGKTTLVQRLCKD 210 (695)
Q Consensus 188 ~vv~I~G~gGiGKTtLa~~~~~~ 210 (695)
-.|+|+|..|+|||||.+.+...
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHhcC
Confidence 46899999999999999998864
No 464
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=91.34 E-value=0.056 Score=49.98 Aligned_cols=108 Identities=12% Similarity=0.141 Sum_probs=53.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCCCCCHHHHHHHHHHhcCCCCCC--CCChHHHHHHHHHHH
Q 042541 187 RQFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSKNPNVKAIVQKVLHHKGYPVPE--FQTDEAAINDLERFF 264 (695)
Q Consensus 187 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~--~~~~~~~~~~l~~~~ 264 (695)
.++..++|..|.||||.+....+....++ +. ++.+...... ..-...+...++...+. .... ..++
T Consensus 8 g~i~v~~G~mgsGKTT~ll~~a~r~~~~g-~k--V~v~k~~~d~--r~~~~~i~s~~g~~~~a~~~~~~-------~~i~ 75 (191)
T 1xx6_A 8 GWVEVIVGPMYSGKSEELIRRIRRAKIAK-QK--IQVFKPEIDN--RYSKEDVVSHMGEKEQAVAIKNS-------REIL 75 (191)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTT-CC--EEEEEEC---------CEEECTTSCEEECEEESSS-------THHH
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHCC-CE--EEEEEeccCc--cchHHHHHhhcCCceeeEeeCCH-------HHHH
Confidence 47899999999999999988777322222 22 4444422111 10111223333321110 0111 1233
Q ss_pred HhcCCCcEEEEEeCCCCCChHHHhhhcc-CCCCCEEEEEcCCC
Q 042541 265 KQMRIEAILLVLDDVWPGSESLLQKLGF-QLPDYKILVTSRSE 306 (695)
Q Consensus 265 ~~l~~~~~LlVlDdv~~~~~~~~~~l~~-~~~gs~iivTtR~~ 306 (695)
+.+.++--+|++|.+.......+..+.. ...|..||+|.++.
T Consensus 76 ~~~~~~~dvViIDEaqfl~~~~v~~l~~l~~~~~~Vi~~Gl~~ 118 (191)
T 1xx6_A 76 KYFEEDTEVIAIDEVQFFDDEIVEIVNKIAESGRRVICAGLDM 118 (191)
T ss_dssp HHCCTTCSEEEECSGGGSCTHHHHHHHHHHHTTCEEEEEECSB
T ss_pred HHHhccCCEEEEECCCCCCHHHHHHHHHHHhCCCEEEEEeccc
Confidence 3444433499999975543332333222 12378999988754
No 465
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=91.31 E-value=0.17 Score=53.18 Aligned_cols=102 Identities=8% Similarity=0.081 Sum_probs=57.3
Q ss_pred HHHHHH-cCCceEEEEEcCCCCcHHHHHHHHhccccccccC-CCcEEEEEeCCCC-CHHHHHHHHHHhcCC-------CC
Q 042541 178 LKMELF-KDGRQFIVVSAPGGYGKTTLVQRLCKDDQVQGKF-KDDIFYVTVSKNP-NVKAIVQKVLHHKGY-------PV 247 (695)
Q Consensus 178 l~~~L~-~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f-~~~~~wv~~~~~~-~~~~~~~~i~~~l~~-------~~ 247 (695)
.++.|. -...+-++|.|.+|+|||+|+.+++++......- +..++++-+++.. ...++.+++...=.. ..
T Consensus 142 ~ID~l~pigrGQr~~Ifgg~G~GKt~Ll~~Ia~~~~~n~~~~~~~~V~~~iGER~~Ev~e~~~~~~~~g~m~rtvvV~~t 221 (469)
T 2c61_A 142 TIDGTNTLVRGQKLPIFSASGLPHNEIALQIARQASVPGSESAFAVVFAAMGITNEEAQYFMSDFEKTGALERAVVFLNL 221 (469)
T ss_dssp HHHTTSCCBTTCBCCEEECTTSCHHHHHHHHHHHCBCTTCSSCEEEEEEEEEECHHHHHHHHHHHHHHSGGGGEEEEEEE
T ss_pred eeeeeeccccCCEEEEECCCCCCHHHHHHHHHHHHhhccCCCCcEEEEEEccCCcHHHHHHHHHHHhccCccceEEEEEC
Confidence 345444 2334667889999999999999998854432211 1225577777654 566777777654111 11
Q ss_pred CCCCChH-----HHHHHHHHHHHhcCCCcEEEEEeCC
Q 042541 248 PEFQTDE-----AAINDLERFFKQMRIEAILLVLDDV 279 (695)
Q Consensus 248 ~~~~~~~-----~~~~~l~~~~~~l~~~~~LlVlDdv 279 (695)
.+.+... ...-.+.+.+..-+++.+|+++||+
T Consensus 222 sd~p~~~r~~~~~~a~tiAEyfrdd~G~dVLl~~Dsl 258 (469)
T 2c61_A 222 ADDPAVERIVTPRMALTAAEYLAYEHGMHVLVILTDI 258 (469)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEeCH
Confidence 1111111 1112233333212489999999996
No 466
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=91.30 E-value=0.11 Score=55.02 Aligned_cols=23 Identities=30% Similarity=0.481 Sum_probs=21.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhc
Q 042541 187 RQFIVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 187 ~~vv~I~G~gGiGKTtLa~~~~~ 209 (695)
..+++|+|..|+|||||++.++.
T Consensus 293 GeVI~LVGpNGSGKTTLl~~LAg 315 (503)
T 2yhs_A 293 PFVILMVGVNGVGKTTTIGKLAR 315 (503)
T ss_dssp TEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCcccHHHHHHHHHH
Confidence 57999999999999999999886
No 467
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=91.28 E-value=0.2 Score=52.43 Aligned_cols=41 Identities=24% Similarity=0.292 Sum_probs=28.6
Q ss_pred CCCcchHHHHHHHHHcCCceEEEEEcCCCCcHHHHHHHHhc
Q 042541 169 PGLDVPLKELKMELFKDGRQFIVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 169 vGr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~~~~ 209 (695)
+|.......+...+......+++|+|+.|+|||||.+.+..
T Consensus 149 Lg~~~~~~~~L~~l~~~~ggii~I~GpnGSGKTTlL~allg 189 (418)
T 1p9r_A 149 LGMTAHNHDNFRRLIKRPHGIILVTGPTGSGKSTTLYAGLQ 189 (418)
T ss_dssp SCCCHHHHHHHHHHHTSSSEEEEEECSTTSCHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHh
Confidence 34443333333333445568999999999999999999876
No 468
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=91.15 E-value=0.17 Score=53.52 Aligned_cols=88 Identities=16% Similarity=0.210 Sum_probs=52.9
Q ss_pred ceEEEEEcCCCCcHHHHH-HHHhccccccccCCCcEEEEEeCCCC-CHHHHHHHHHHhcC-------CCCCCCCC-----
Q 042541 187 RQFIVVSAPGGYGKTTLV-QRLCKDDQVQGKFKDDIFYVTVSKNP-NVKAIVQKVLHHKG-------YPVPEFQT----- 252 (695)
Q Consensus 187 ~~vv~I~G~gGiGKTtLa-~~~~~~~~~~~~f~~~~~wv~~~~~~-~~~~~~~~i~~~l~-------~~~~~~~~----- 252 (695)
.+-++|.|..|+|||+|| ..+.+. .. -+..++++-+++.. ...++.+.+...=. ....+.+.
T Consensus 163 GQR~~Ifg~~g~GKT~Lal~~I~~~--~~--~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~rtvvV~atad~p~~~r~~ 238 (507)
T 1fx0_A 163 GQRELIIGDRQTGKTAVATDTILNQ--QG--QNVICVYVAIGQKASSVAQVVTNFQERGAMEYTIVVAETADSPATLQYL 238 (507)
T ss_dssp TCBCBEEESSSSSHHHHHHHHHHTC--CT--TTCEEEEEEESCCHHHHHHHHHHTGGGTGGGSEEEEEECTTSCGGGTTH
T ss_pred CCEEEEecCCCCCccHHHHHHHHHh--hc--CCcEEEEEEcCCCchHHHHHHHHHHhcCccccceEEEECCCCCHHHHHH
Confidence 467899999999999996 577663 22 34335678888765 45566666554210 01111111
Q ss_pred hHHHHHHHHHHHHhcCCCcEEEEEeCC
Q 042541 253 DEAAINDLERFFKQMRIEAILLVLDDV 279 (695)
Q Consensus 253 ~~~~~~~l~~~~~~l~~~~~LlVlDdv 279 (695)
.....-.+.+.+.. .++.+|+++||+
T Consensus 239 a~~~a~tiAEyfrd-~G~dVLli~Dsl 264 (507)
T 1fx0_A 239 APYTGAALAEYFMY-RERHTLIIYDDL 264 (507)
T ss_dssp HHHHHHHHHHHHHH-TTCEEEEEEECH
T ss_pred HHHHHHHHHHHHHH-cCCcEEEEEecH
Confidence 12223345555533 699999999997
No 469
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=91.06 E-value=0.24 Score=52.49 Aligned_cols=98 Identities=14% Similarity=0.137 Sum_probs=57.4
Q ss_pred HHHHHHH-cCCceEEEEEcCCCCcHHHHH-HHHhccccccccCCCcEEEEEeCCCC-CHHHHHHHHHHhcC-------CC
Q 042541 177 ELKMELF-KDGRQFIVVSAPGGYGKTTLV-QRLCKDDQVQGKFKDDIFYVTVSKNP-NVKAIVQKVLHHKG-------YP 246 (695)
Q Consensus 177 ~l~~~L~-~~~~~vv~I~G~gGiGKTtLa-~~~~~~~~~~~~f~~~~~wv~~~~~~-~~~~~~~~i~~~l~-------~~ 246 (695)
+.++.+. -...+-++|.|..|+|||+|| ..+.+. . .-+..++++-+++.. ...++.+.+...=. ..
T Consensus 164 raID~l~PigrGQR~~I~g~~g~GKT~Lal~~I~~~--~--~~dv~~V~~~IGeR~~Ev~e~~~~~~~~g~m~rtvvV~a 239 (515)
T 2r9v_A 164 KAIDSMIPIGRGQRELIIGDRQTGKTAIAIDTIINQ--K--GQGVYCIYVAIGQKKSAIARIIDKLRQYGAMEYTTVVVA 239 (515)
T ss_dssp HHHHHHSCEETTCBEEEEEETTSSHHHHHHHHHHTT--T--TTTEEEEEEEESCCHHHHHHHHHHHHHTTGGGGEEEEEE
T ss_pred cccccccccccCCEEEEEcCCCCCccHHHHHHHHHh--h--cCCcEEEEEEcCCCcHHHHHHHHHHHhCCCcceeEEEEE
Confidence 3445554 234467899999999999996 467663 2 233224677788765 45667777765311 11
Q ss_pred CCCCCChH-----HHHHHHHHHHHhcCCCcEEEEEeCC
Q 042541 247 VPEFQTDE-----AAINDLERFFKQMRIEAILLVLDDV 279 (695)
Q Consensus 247 ~~~~~~~~-----~~~~~l~~~~~~l~~~~~LlVlDdv 279 (695)
..+.+... ...-.+.+.+.. .++.+|+++||+
T Consensus 240 tad~p~~~r~~a~~~a~tiAEyfrd-~G~dVLli~Dsl 276 (515)
T 2r9v_A 240 SASDPASLQYIAPYAGCAMGEYFAY-SGRDALVVYDDL 276 (515)
T ss_dssp CTTSCHHHHHHHHHHHHHHHHHHHT-TTCEEEEEEETH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHH-cCCcEEEEeccH
Confidence 11111111 112234444433 689999999997
No 470
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=91.04 E-value=0.13 Score=45.54 Aligned_cols=23 Identities=30% Similarity=0.469 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcc
Q 042541 188 QFIVVSAPGGYGKTTLVQRLCKD 210 (695)
Q Consensus 188 ~vv~I~G~gGiGKTtLa~~~~~~ 210 (695)
+-|+|+|.+|+|||||+..+...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999998764
No 471
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=91.02 E-value=0.15 Score=53.16 Aligned_cols=24 Identities=21% Similarity=0.342 Sum_probs=21.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhc
Q 042541 186 GRQFIVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 186 ~~~vv~I~G~gGiGKTtLa~~~~~ 209 (695)
...+++|+|+.|+|||||.+.+..
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~G 91 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRG 91 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHT
T ss_pred CCeEEEEECCCCCcHHHHHHHHhC
Confidence 457999999999999999999876
No 472
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=90.97 E-value=0.12 Score=50.59 Aligned_cols=23 Identities=30% Similarity=0.596 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhc
Q 042541 187 RQFIVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 187 ~~vv~I~G~gGiGKTtLa~~~~~ 209 (695)
..+++|+|+.|+|||||.+.++.
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~G 52 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISG 52 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEEECCCCCCHHHHHHHHhC
Confidence 46899999999999999999986
No 473
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=90.96 E-value=0.2 Score=49.78 Aligned_cols=39 Identities=21% Similarity=0.315 Sum_probs=29.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCCC
Q 042541 188 QFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSKN 229 (695)
Q Consensus 188 ~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~~ 229 (695)
++|+|.|-||+||||+|..++. ..... ..+++.|+....
T Consensus 3 kvIavs~KGGvGKTT~a~nLA~--~La~~-G~rVlliD~D~q 41 (289)
T 2afh_E 3 RQCAIYGKGGIGKSTTTQNLVA--ALAEM-GKKVMIVGCDPK 41 (289)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH--HHHHT-TCCEEEEEECSS
T ss_pred eEEEEeCCCcCcHHHHHHHHHH--HHHHC-CCeEEEEecCCC
Confidence 6788899999999999998886 33222 334778887643
No 474
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=90.95 E-value=0.11 Score=51.51 Aligned_cols=23 Identities=30% Similarity=0.494 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhc
Q 042541 187 RQFIVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 187 ~~vv~I~G~gGiGKTtLa~~~~~ 209 (695)
..++.|+|++|+|||||+..++.
T Consensus 30 G~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 30 GTVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 47999999999999999998875
No 475
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=90.90 E-value=0.2 Score=46.02 Aligned_cols=24 Identities=33% Similarity=0.571 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcc
Q 042541 187 RQFIVVSAPGGYGKTTLVQRLCKD 210 (695)
Q Consensus 187 ~~vv~I~G~gGiGKTtLa~~~~~~ 210 (695)
...|+|+|.+|+|||||+..+...
T Consensus 48 ~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 48 QPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 457999999999999999998764
No 476
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=90.88 E-value=0.3 Score=45.30 Aligned_cols=51 Identities=22% Similarity=0.321 Sum_probs=34.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCCCCCHHHHHHHHHHh
Q 042541 189 FIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSKNPNVKAIVQKVLHH 242 (695)
Q Consensus 189 vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~~~~~~~~~~~i~~~ 242 (695)
.|+|-|.-|+||||.++.+++ .+...-.. +.+..-.......+.++.++..
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~--~L~~~g~~-v~~treP~~t~~~~~ir~~l~~ 52 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQ--YLEKRGKK-VILKREPGGTETGEKIRKILLE 52 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH--HHHHTTCC-EEEEESSCSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH--HHHHCCCc-EEEEECCCCCcHHHHHHHHhhc
Confidence 478899999999999999987 45443333 5455555554555555555543
No 477
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=90.84 E-value=0.53 Score=48.97 Aligned_cols=105 Identities=8% Similarity=0.170 Sum_probs=78.7
Q ss_pred hhcCCCCCcEEEEcccCCCCcccCcccccccCCCCcEEEeccCCCCCcc--cccccccccEEeeccccCCcccccchhhh
Q 042541 569 FLQKMDELKVLIVTNYGFSPAELNNFRVLSALSKLKKIRLEHVSLPNSL--ATVRMNHLQKVSLVMCNVGQVFRNSTFRI 646 (695)
Q Consensus 569 ~~~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~lp--~i~~l~~L~~L~l~~~~i~~~~~~~~~~l 646 (695)
.|.++.+|+.+.+.++.. .+.. ..+.++.+|+.+.+. +.+..++ .+.++.+|+.+.|..+ ++.+....|.
T Consensus 260 aF~~c~~L~~i~lp~~~~---~I~~-~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~-- 331 (394)
T 4gt6_A 260 AFDSCAYLASVKMPDSVV---SIGT-GAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFA-- 331 (394)
T ss_dssp TTTTCSSCCEEECCTTCC---EECT-TTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTT--
T ss_pred eeeecccccEEecccccc---eecC-cccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhh--
Confidence 577888899888765322 1111 125678889999885 5677788 8888999999999754 6777777776
Q ss_pred cccCCCccEEecccccccccCchh-hcCCCCCceeecccc
Q 042541 647 SDAFPNLLEMDIDYCNDLIELPDG-LCDIVSMEKLRITNC 685 (695)
Q Consensus 647 ~~~l~~L~~L~l~~c~~l~~lP~~-i~~L~~L~~L~l~~~ 685 (695)
.+++|+.+.+.. .+..++.. |.++.+|+.+++.++
T Consensus 332 --~C~~L~~i~ip~--sv~~I~~~aF~~C~~L~~i~~~~~ 367 (394)
T 4gt6_A 332 --GCEQLERIAIPS--SVTKIPESAFSNCTALNNIEYSGS 367 (394)
T ss_dssp --TCTTCCEEEECT--TCCBCCGGGGTTCTTCCEEEESSC
T ss_pred --CCCCCCEEEECc--ccCEEhHhHhhCCCCCCEEEECCc
Confidence 899999999964 47778654 889999999998764
No 478
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=90.84 E-value=0.12 Score=53.21 Aligned_cols=25 Identities=28% Similarity=0.418 Sum_probs=22.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhc
Q 042541 185 DGRQFIVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 185 ~~~~vv~I~G~gGiGKTtLa~~~~~ 209 (695)
+...+++|+|+.|+|||||++.+..
T Consensus 167 ~~~~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 167 PKKRYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHh
Confidence 4457999999999999999999986
No 479
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=90.82 E-value=0.074 Score=58.75 Aligned_cols=21 Identities=19% Similarity=0.395 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 042541 189 FIVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 189 vv~I~G~gGiGKTtLa~~~~~ 209 (695)
-|.++|++|+|||+||+.+++
T Consensus 329 ~vLL~GppGtGKT~LAr~la~ 349 (595)
T 3f9v_A 329 HILIIGDPGTAKSQMLQFISR 349 (595)
T ss_dssp CEEEEESSCCTHHHHHHSSST
T ss_pred ceEEECCCchHHHHHHHHHHH
Confidence 589999999999999999886
No 480
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=90.79 E-value=0.24 Score=48.45 Aligned_cols=39 Identities=23% Similarity=0.367 Sum_probs=28.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCCC
Q 042541 188 QFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSKN 229 (695)
Q Consensus 188 ~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~~ 229 (695)
++|+|.|-||+||||+|..++. ..... ..+++.|+....
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~--~la~~-G~~VlliD~D~q 40 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTS--GLHAM-GKTIMVVGCDPK 40 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH--HHHTT-TCCEEEEEECTT
T ss_pred cEEEEecCCCCcHHHHHHHHHH--HHHHC-CCcEEEEcCCCC
Confidence 5788899999999999988886 33322 334778887643
No 481
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=90.77 E-value=0.58 Score=49.36 Aligned_cols=98 Identities=17% Similarity=0.229 Sum_probs=57.6
Q ss_pred HHHHHH-cCCceEEEEEcCCCCcHHHHH-HHHhccccccccCCCcEEEEEeCCCC-CHHHHHHHHHHhcCCC-------C
Q 042541 178 LKMELF-KDGRQFIVVSAPGGYGKTTLV-QRLCKDDQVQGKFKDDIFYVTVSKNP-NVKAIVQKVLHHKGYP-------V 247 (695)
Q Consensus 178 l~~~L~-~~~~~vv~I~G~gGiGKTtLa-~~~~~~~~~~~~f~~~~~wv~~~~~~-~~~~~~~~i~~~l~~~-------~ 247 (695)
.++.|. -...+-++|.|..|+|||+|+ ..+.+. ..-+..++++-+++.. ...++.+.+...=... .
T Consensus 152 aID~l~PigrGQR~~Ifg~~g~GKT~l~l~~I~n~----~~~dv~~V~~~IGeR~~ev~e~~~~l~~~g~m~~tvvV~at 227 (513)
T 3oaa_A 152 AVDSMIPIGRGQRELIIGDRQTGKTALAIDAIINQ----RDSGIKCIYVAIGQKASTISNVVRKLEEHGALANTIVVVAT 227 (513)
T ss_dssp HHHHHSCCBTTCBCEEEESSSSSHHHHHHHHHHTT----SSSSCEEEEEEESCCHHHHHHHHHHHHHHSCSTTEEEEEEC
T ss_pred eeccccccccCCEEEeecCCCCCcchHHHHHHHhh----ccCCceEEEEEecCChHHHHHHHHHHhhcCcccceEEEEEC
Confidence 445554 334567899999999999996 566652 2233335688888765 4567777765541111 1
Q ss_pred CCCCChH-----HHHHHHHHHHHhcCCCcEEEEEeCCC
Q 042541 248 PEFQTDE-----AAINDLERFFKQMRIEAILLVLDDVW 280 (695)
Q Consensus 248 ~~~~~~~-----~~~~~l~~~~~~l~~~~~LlVlDdv~ 280 (695)
.+.+... ...-.+.+.+.. +++.+|+++||+.
T Consensus 228 ad~p~~~r~~a~~~a~tiAEyfrd-~G~dVLli~Dslt 264 (513)
T 3oaa_A 228 ASESAALQYLAPYAGCAMGEYFRD-RGEDALIIYDDLS 264 (513)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHH-TTCEEEEEEETHH
T ss_pred CCCChHHHHHHHHHHHHHHHHHHh-cCCCEEEEecChH
Confidence 1111111 112234444432 6999999999973
No 482
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=90.75 E-value=0.13 Score=49.28 Aligned_cols=23 Identities=26% Similarity=0.456 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhc
Q 042541 187 RQFIVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 187 ~~vv~I~G~gGiGKTtLa~~~~~ 209 (695)
..+|+|.|+.|+||||+++.+..
T Consensus 16 ~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 16 TIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCEEEEECSSCSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999999876
No 483
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=90.74 E-value=0.24 Score=46.79 Aligned_cols=38 Identities=16% Similarity=0.247 Sum_probs=26.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCCC
Q 042541 189 FIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSKN 229 (695)
Q Consensus 189 vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~~ 229 (695)
.|.+.|.||+||||+|..+.... ....++ +..+.+...
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l-~~~G~~--V~v~d~D~q 45 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQ-LRQGVR--VMAGVVETH 45 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHH-HHTTCC--EEEEECCCT
T ss_pred EEEEECCCCCcHHHHHHHHHHHH-HHCCCC--EEEEEeCCC
Confidence 48889999999999998887732 222233 656666543
No 484
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=90.73 E-value=0.49 Score=58.76 Aligned_cols=85 Identities=16% Similarity=0.202 Sum_probs=54.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCCCCCHHHHHHHHHHhcCCCCCC-----CCChHHHHHHHH
Q 042541 187 RQFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSKNPNVKAIVQKVLHHKGYPVPE-----FQTDEAAINDLE 261 (695)
Q Consensus 187 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~~~~~l~ 261 (695)
..++.|+|++|+||||||.+++.. .... ...++|++.....+... ++.++..... ..+.++..+.+.
T Consensus 383 G~lilI~G~pGsGKTtLaLqia~~--~a~~-G~~vlyis~E~s~~~~~-----a~~lGvd~~~L~I~~~~~~e~il~~~~ 454 (2050)
T 3cmu_A 383 GRIVEIYGPESSGKTTLTLQVIAA--AQRE-GKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD 454 (2050)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHH--HHTT-TCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHH--HHhc-CCeEEEEEcCCCHHHHH-----HHHcCCCHHHeEEeCCCCHHHHHHHHH
Confidence 579999999999999999998873 3222 23488999888777542 4556543221 123333334443
Q ss_pred HHHHhcCCCcEEEEEeCCCC
Q 042541 262 RFFKQMRIEAILLVLDDVWP 281 (695)
Q Consensus 262 ~~~~~l~~~~~LlVlDdv~~ 281 (695)
.+.+ ..+.-+||+|.+..
T Consensus 455 ~lv~--~~~~~lIVIDSL~a 472 (2050)
T 3cmu_A 455 ALAR--SGAVDVIVVDSVAA 472 (2050)
T ss_dssp HHHH--HTCCSEEEESCGGG
T ss_pred HHHH--hcCCcEEEECCHHH
Confidence 3332 24567999999743
No 485
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=90.71 E-value=0.1 Score=52.10 Aligned_cols=24 Identities=29% Similarity=0.530 Sum_probs=21.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhc
Q 042541 186 GRQFIVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 186 ~~~vv~I~G~gGiGKTtLa~~~~~ 209 (695)
...+++|+|+.|+|||||++.+..
T Consensus 79 ~Ge~vaivG~sGsGKSTLl~ll~g 102 (306)
T 3nh6_A 79 PGQTLALVGPSGAGKSTILRLLFR 102 (306)
T ss_dssp TTCEEEEESSSCHHHHHHHHHHTT
T ss_pred CCCEEEEECCCCchHHHHHHHHHc
Confidence 357999999999999999999875
No 486
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=90.67 E-value=0.14 Score=50.92 Aligned_cols=24 Identities=29% Similarity=0.445 Sum_probs=21.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhc
Q 042541 186 GRQFIVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 186 ~~~vv~I~G~gGiGKTtLa~~~~~ 209 (695)
...+++|+|+.|+|||||.+.+..
T Consensus 63 ~Ge~~~i~G~NGsGKSTLlk~l~G 86 (290)
T 2bbs_A 63 RGQLLAVAGSTGAGKTSLLMMIMG 86 (290)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCcHHHHHHHHhc
Confidence 357999999999999999999876
No 487
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=90.66 E-value=0.12 Score=50.72 Aligned_cols=21 Identities=48% Similarity=0.640 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 042541 189 FIVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 189 vv~I~G~gGiGKTtLa~~~~~ 209 (695)
.++|+|+.|+|||||.+.++.
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g 24 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFK 24 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 589999999999999999886
No 488
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=90.57 E-value=0.12 Score=45.85 Aligned_cols=22 Identities=36% Similarity=0.611 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 042541 189 FIVVSAPGGYGKTTLVQRLCKD 210 (695)
Q Consensus 189 vv~I~G~gGiGKTtLa~~~~~~ 210 (695)
-|.|+|.+|+|||||+..+...
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4889999999999999998764
No 489
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=90.57 E-value=0.14 Score=49.23 Aligned_cols=23 Identities=26% Similarity=0.323 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhc
Q 042541 187 RQFIVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 187 ~~vv~I~G~gGiGKTtLa~~~~~ 209 (695)
...|+|.|..|+||||+++.+.+
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~ 24 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTK 24 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Confidence 46899999999999999999987
No 490
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=90.56 E-value=0.15 Score=46.71 Aligned_cols=23 Identities=22% Similarity=0.258 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcc
Q 042541 188 QFIVVSAPGGYGKTTLVQRLCKD 210 (695)
Q Consensus 188 ~vv~I~G~gGiGKTtLa~~~~~~ 210 (695)
..|+|+|.+|+|||||...+...
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 56899999999999999999863
No 491
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=90.54 E-value=0.15 Score=49.16 Aligned_cols=49 Identities=14% Similarity=0.253 Sum_probs=31.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhccccccccCCCcEEEEEeCCCCCHHHHHHHH
Q 042541 187 RQFIVVSAPGGYGKTTLVQRLCKDDQVQGKFKDDIFYVTVSKNPNVKAIVQKV 239 (695)
Q Consensus 187 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~wv~~~~~~~~~~~~~~i 239 (695)
..++.|.|.+|+|||+||.+++.+. ....-. .+++++... +...+...+
T Consensus 30 G~l~~i~G~pG~GKT~l~l~~~~~~-~~~~~~-~v~~~s~E~--~~~~~~~~~ 78 (251)
T 2zts_A 30 GTTVLLTGGTGTGKTTFAAQFIYKG-AEEYGE-PGVFVTLEE--RARDLRREM 78 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHH-HHHHCC-CEEEEESSS--CHHHHHHHH
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHH-HHhcCC-CceeecccC--CHHHHHHHH
Confidence 4789999999999999998876421 222122 266776654 345554443
No 492
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=90.54 E-value=1 Score=42.85 Aligned_cols=32 Identities=22% Similarity=0.390 Sum_probs=22.9
Q ss_pred HHHHHHHHHcCCceEEEEEcCCCCcHHHHHHHHh
Q 042541 175 LKELKMELFKDGRQFIVVSAPGGYGKTTLVQRLC 208 (695)
Q Consensus 175 ~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~~~ 208 (695)
.++++..+..+ +.+.|+|+.|+||||+.....
T Consensus 66 q~~~i~~i~~g--~~~~i~g~TGsGKTt~~~~~~ 97 (235)
T 3llm_A 66 ESEILEAISQN--SVVIIRGATGCGKTTQVPQFI 97 (235)
T ss_dssp HHHHHHHHHHC--SEEEEECCTTSSHHHHHHHHH
T ss_pred HHHHHHHHhcC--CEEEEEeCCCCCcHHhHHHHH
Confidence 34555555543 689999999999998765543
No 493
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=90.48 E-value=0.21 Score=45.07 Aligned_cols=25 Identities=20% Similarity=0.260 Sum_probs=21.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcc
Q 042541 186 GRQFIVVSAPGGYGKTTLVQRLCKD 210 (695)
Q Consensus 186 ~~~vv~I~G~gGiGKTtLa~~~~~~ 210 (695)
....|+|+|.+|+|||||+..+.+.
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3567899999999999999998764
No 494
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=90.46 E-value=0.33 Score=45.61 Aligned_cols=51 Identities=18% Similarity=0.360 Sum_probs=33.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhccccccc-cCCCcEEEEEeCCCCCHHHHHHHHHH
Q 042541 188 QFIVVSAPGGYGKTTLVQRLCKDDQVQG-KFKDDIFYVTVSKNPNVKAIVQKVLH 241 (695)
Q Consensus 188 ~vv~I~G~gGiGKTtLa~~~~~~~~~~~-~f~~~~~wv~~~~~~~~~~~~~~i~~ 241 (695)
..|.|.|+.|+||||+++.+.+ .... .+.. +....-.....+.+.+++++.
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~--~l~~~~~~~-v~~~rep~~t~~g~~ir~~l~ 55 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVE--TLEQLGIRD-MVFTREPGGTQLAEKLRSLLL 55 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHH--HHHHTTCCC-EEEEESSCSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH--HHHHcCCCc-ceeeeCCCCCHHHHHHHHHHh
Confidence 5799999999999999999987 3332 2323 434443333344555666665
No 495
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=90.42 E-value=0.13 Score=45.88 Aligned_cols=23 Identities=39% Similarity=0.719 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcc
Q 042541 188 QFIVVSAPGGYGKTTLVQRLCKD 210 (695)
Q Consensus 188 ~vv~I~G~gGiGKTtLa~~~~~~ 210 (695)
--|.|+|.+|+|||||+..+.+.
T Consensus 6 ~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEEECcCCCCHHHHHHHHHcC
Confidence 45889999999999999998764
No 496
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=90.40 E-value=0.14 Score=46.15 Aligned_cols=23 Identities=26% Similarity=0.332 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcc
Q 042541 188 QFIVVSAPGGYGKTTLVQRLCKD 210 (695)
Q Consensus 188 ~vv~I~G~gGiGKTtLa~~~~~~ 210 (695)
--|+|+|.+|+|||||+..+...
T Consensus 5 ~ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 5 YRVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEEECCCCccHHHHHHHHhcC
Confidence 45899999999999999998764
No 497
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=90.38 E-value=0.14 Score=52.90 Aligned_cols=22 Identities=32% Similarity=0.578 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 042541 188 QFIVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 188 ~vv~I~G~gGiGKTtLa~~~~~ 209 (695)
++|+|.|+.|+||||||..++.
T Consensus 3 ~~i~i~GptgsGKttla~~La~ 24 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQ 24 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHHHH
Confidence 6899999999999999999886
No 498
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=90.37 E-value=0.15 Score=52.16 Aligned_cols=23 Identities=30% Similarity=0.530 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhc
Q 042541 187 RQFIVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 187 ~~vv~I~G~gGiGKTtLa~~~~~ 209 (695)
..+++|+|+.|+|||||.+.++-
T Consensus 30 Ge~~~llGpsGsGKSTLLr~iaG 52 (359)
T 3fvq_A 30 GEILFIIGASGCGKTTLLRCLAG 52 (359)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCchHHHHHHHHhc
Confidence 47899999999999999999886
No 499
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=90.36 E-value=0.26 Score=44.99 Aligned_cols=34 Identities=18% Similarity=0.340 Sum_probs=26.3
Q ss_pred HHHHHHHHcCCceEEEEEcCCCCcHHHHHHHHhcc
Q 042541 176 KELKMELFKDGRQFIVVSAPGGYGKTTLVQRLCKD 210 (695)
Q Consensus 176 ~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~~~~~ 210 (695)
..+.+ +......-|+|+|.+|+|||||...+.+.
T Consensus 6 ~~~~~-~~~~~~~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 6 TRIWR-LFNHQEHKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp HHHHH-HHTTSCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred HHHHH-hcCCCccEEEEECCCCCCHHHHHHHHhcC
Confidence 34445 44555677999999999999999998853
No 500
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=90.33 E-value=0.24 Score=48.07 Aligned_cols=34 Identities=21% Similarity=0.192 Sum_probs=25.9
Q ss_pred HHHHHHHHcC--CceEEEEEcCCCCcHHHHHHHHhc
Q 042541 176 KELKMELFKD--GRQFIVVSAPGGYGKTTLVQRLCK 209 (695)
Q Consensus 176 ~~l~~~L~~~--~~~vv~I~G~gGiGKTtLa~~~~~ 209 (695)
..+..+|... ....|.++|++|.|||.+|..+++
T Consensus 91 ~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~ 126 (267)
T 1u0j_A 91 SVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAH 126 (267)
T ss_dssp HHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHh
Confidence 3355555532 245799999999999999999987
Done!