Query 042542
Match_columns 359
No_of_seqs 165 out of 781
Neff 7.3
Searched_HMMs 29240
Date Mon Mar 25 12:17:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042542.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042542hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4i1k_A B3 domain-containing tr 100.0 3.2E-32 1.1E-36 233.4 14.4 118 241-359 22-142 (146)
2 1yel_A AT1G16640; CESG, protei 100.0 4.8E-28 1.6E-32 196.2 12.6 102 14-116 3-104 (104)
3 4i1k_A B3 domain-containing tr 99.9 9.3E-23 3.2E-27 174.6 13.3 108 5-114 33-143 (146)
4 1yel_A AT1G16640; CESG, protei 99.9 1.3E-22 4.4E-27 164.2 10.4 96 261-359 4-101 (104)
5 1wid_A DNA-binding protein RAV 99.8 2.2E-19 7.6E-24 150.8 10.6 97 263-359 9-117 (130)
6 1wid_A DNA-binding protein RAV 99.6 1.4E-14 4.7E-19 121.5 12.4 98 16-113 8-117 (130)
7 2glw_A PHS018, 92AA long hypot 54.5 60 0.0021 24.5 7.8 69 34-105 15-89 (92)
8 2cbp_A Cucumber basic protein; 48.7 8.9 0.0003 29.3 2.2 32 323-354 9-44 (96)
9 1x9u_A Umecyanin; cupredoxin, 46.0 7.2 0.00025 31.0 1.3 28 327-354 23-50 (116)
10 1oa8_A Ataxin-1; RNA binding, 42.7 9.7 0.00033 31.1 1.6 23 320-342 92-124 (133)
11 2l66_A SSO7C4, transcriptional 39.0 27 0.00093 23.3 3.3 23 82-104 18-40 (53)
12 1yfb_A Transition state regula 38.0 55 0.0019 22.6 4.8 29 72-103 21-49 (59)
13 1x9u_A Umecyanin; cupredoxin, 37.7 11 0.00037 30.0 1.2 26 83-108 23-50 (116)
14 2cbp_A Cucumber basic protein; 37.5 11 0.00039 28.7 1.2 24 85-108 19-44 (96)
15 3o27_A Putative uncharacterize 32.8 37 0.0013 24.2 3.1 27 281-307 26-55 (68)
16 1f56_A Plantacyanin; cupredoxi 31.5 28 0.00095 26.2 2.5 28 327-354 12-39 (91)
17 1ws8_A Mavicyanin; oxidized fo 30.8 35 0.0012 26.6 3.1 27 82-108 22-50 (109)
18 1jer_A Cucumber stellacyanin; 29.7 16 0.00056 29.9 1.0 28 327-354 25-52 (138)
19 1ws8_A Mavicyanin; oxidized fo 24.6 42 0.0014 26.2 2.5 28 327-354 23-50 (109)
No 1
>4i1k_A B3 domain-containing transcription factor VRN1; B3 domain beta-barrel, DNA binding protein; 1.60A {Arabidopsis thaliana}
Probab=99.98 E-value=3.2e-32 Score=233.37 Aligned_cols=118 Identities=31% Similarity=0.598 Sum_probs=107.4
Q ss_pred ccCcCCCHHHHHHHHHHhhhcCCCCCeEEEEccCcccccCc-eEcCHHHHHhhCCCCC-eEEEEeCCCCEEEEEEEecc-
Q 042542 241 DCESRMTLEEKQEAINVARFLKPEKPSFLVFLRASNMQLNC-VYVPNSFARKYFNGEE-CVTIQDSDGRKLAVKVKVSC- 317 (359)
Q Consensus 241 ~~~~~lt~~e~~~a~~~a~~~~s~~p~f~~~m~~s~v~~~~-l~iP~~F~~~~l~~~~-~i~L~~~~G~~W~v~l~~~~- 317 (359)
++++++|.+|+++|+++|++|+|++|+|+++|++|++.+++ |.||++|++.|||... +|+|++++ +.|.|++..+.
T Consensus 22 ~~r~~~t~~~k~~a~~~A~~~~s~~P~Fvk~l~~S~v~~~~~L~IP~~Fa~~~lp~~~~~i~L~~~g-k~W~v~~~~~~~ 100 (146)
T 4i1k_A 22 ARKRTVTAEERERAINAAKTFEPTNPFFRVVLRPSYLYRGCIMYLPSGFAEKYLSGISGFIKVQLAE-KQWPVRCLYKAG 100 (146)
T ss_dssp ----CCCHHHHHHHHHHHHHCCCSSCEEEEECCGGGSSTTCCEECCHHHHHHHCTTCCSEEEEEETT-EEEEEEEEEETT
T ss_pred cCCCCCCHHHHHHHHHHHHHcCCCCCEEEEEECchhcCCCcEEEeCHHHHHHhCCCCCeEEEEEECC-cEEEEEEEEeCC
Confidence 57788999999999999999999999999999999998876 9999999999999998 99999994 99999987654
Q ss_pred ccccccchhhhhcccCCCCCCEEEEEEEecceeEEEEEEEeC
Q 042542 318 SKCLLTRWGKFFKKTNVKEGDILFFEMIQMKNILLKVSVFNA 359 (359)
Q Consensus 318 ~~~l~~GW~~F~~~n~L~~GD~cvFeli~~~~~~~~VhIfr~ 359 (359)
...|++||.+||++|+|++||+|+|||+++.+++|+||||||
T Consensus 101 ~~~ls~GW~~Fv~dn~L~~GD~cvFeli~~~~~~f~V~IfR~ 142 (146)
T 4i1k_A 101 RAKFSQGWYEFTLENNLGEGDVCVFELLRTRDFVLKVTAFRV 142 (146)
T ss_dssp EEEECTTHHHHHHHTTCCTTCEEEEEECSSSSCEEEEEEECC
T ss_pred cEEECCchHHHHHHcCCCCCCEEEEEEecCCceEEEEEEEec
Confidence 358999999999999999999999999998789999999997
No 2
>1yel_A AT1G16640; CESG, protein structure initiative, structural genomics, center for eukaryotic structural genomics, unknown function; NMR {Arabidopsis thaliana} SCOP: b.142.1.2
Probab=99.95 E-value=4.8e-28 Score=196.21 Aligned_cols=102 Identities=19% Similarity=0.433 Sum_probs=96.6
Q ss_pred cCCCCCCceEEEccCCccccceeeCchHHHHhhCCCCCceEEEECCCCCEEEEEEEEECCeeEEcccHHHHHhHcCCCCC
Q 042542 14 SMKKTNSLFFQVILAVTIEDKKMKIPQNFVGRFGDELSYVATLTNPKGYVVRIGITKKEGKIWFDDGWNEFVQYHSIGVG 93 (359)
Q Consensus 14 ~~~~~~p~F~k~i~~~~l~~~~l~IP~~F~~~~~~~~~~~i~L~~~~g~~W~V~l~~~~~~~~~~~GW~~F~~~~~l~~G 93 (359)
..++..|+|+|+|++++ ....|.||..|+++|.+..+.+|+|++++|++|+|.+.+.++.++|++||++||.+|+|++|
T Consensus 3 m~~~~~p~F~K~l~~~~-~~~~L~IP~~F~~~~~~~~~~~v~L~~~~G~~W~v~~~~~~~~~~l~~GW~~Fv~~~~L~~G 81 (104)
T 1yel_A 3 MADTGEVQFMKPFISEK-SSKSLEIPLGFNEYFPAPFPITVDLLDYSGRSWTVRMKKRGEKVFLTVGWENFVKDNNLEDG 81 (104)
T ss_dssp CCCCCCEEEEEECCHHH-HTTCEECCHHHHTTCCCCCCSEEEEEETTSCEEEEEEEEETTEEEECTTHHHHHHHHTCCTT
T ss_pred CCCCCCCCEEEEECCCC-ccceEECCHHHHHhcCccCCCEEEEECCCCCEEEEEEEEECCcEEEccChHHHHHHcCCCCC
Confidence 45678999999999887 35899999999999999999999999999999999999989999999999999999999999
Q ss_pred CEEEEEEeecceEEEEEEccCCc
Q 042542 94 YFVVFQYRKNSKFQVFVFNTTTF 116 (359)
Q Consensus 94 d~lvF~~~g~s~F~V~if~~s~~ 116 (359)
|+|+|+|+|++.|.|+||+.++|
T Consensus 82 D~lvF~~~~~~~f~V~If~~s~C 104 (104)
T 1yel_A 82 KYLQFIYDRDRTFYVIIYGHNMC 104 (104)
T ss_dssp CEEEEEECSSSEEEEEEECSSCC
T ss_pred CEEEEEEcCCCeEEEEEECCCCC
Confidence 99999999999999999999988
No 3
>4i1k_A B3 domain-containing transcription factor VRN1; B3 domain beta-barrel, DNA binding protein; 1.60A {Arabidopsis thaliana}
Probab=99.89 E-value=9.3e-23 Score=174.57 Aligned_cols=108 Identities=22% Similarity=0.335 Sum_probs=97.5
Q ss_pred cccchHHhhcCCCCCCceEEEccCCcccc-ceeeCchHHHHhhCCCCCceEEEECCCCCEEEEEEEEECCeeEEcccHHH
Q 042542 5 RRAEPKMASSMKKTNSLFFQVILAVTIED-KKMKIPQNFVGRFGDELSYVATLTNPKGYVVRIGITKKEGKIWFDDGWNE 83 (359)
Q Consensus 5 ~~~~~~~~~~~~~~~p~F~k~i~~~~l~~-~~l~IP~~F~~~~~~~~~~~i~L~~~~g~~W~V~l~~~~~~~~~~~GW~~ 83 (359)
.+|.. .|.++.+++|+|+++|+++++.. ..|.||..|++.|.+.....|+|+++ |+.|.|.+...++..+|++||.+
T Consensus 33 ~~a~~-~A~~~~s~~P~Fvk~l~~S~v~~~~~L~IP~~Fa~~~lp~~~~~i~L~~~-gk~W~v~~~~~~~~~~ls~GW~~ 110 (146)
T 4i1k_A 33 ERAIN-AAKTFEPTNPFFRVVLRPSYLYRGCIMYLPSGFAEKYLSGISGFIKVQLA-EKQWPVRCLYKAGRAKFSQGWYE 110 (146)
T ss_dssp HHHHH-HHHHCCCSSCEEEEECCGGGSSTTCCEECCHHHHHHHCTTCCSEEEEEET-TEEEEEEEEEETTEEEECTTHHH
T ss_pred HHHHH-HHHHcCCCCCEEEEEECchhcCCCcEEEeCHHHHHHhCCCCCeEEEEEEC-CcEEEEEEEEeCCcEEECCchHH
Confidence 34444 48899999999999999999864 37999999999999998999999998 59999999887889999999999
Q ss_pred HHhHcCCCCCCEEEEEEeecc--eEEEEEEccC
Q 042542 84 FVQYHSIGVGYFVVFQYRKNS--KFQVFVFNTT 114 (359)
Q Consensus 84 F~~~~~l~~Gd~lvF~~~g~s--~F~V~if~~s 114 (359)
||.+|+|++||+|+|+|+++. .|.|+||+..
T Consensus 111 Fv~dn~L~~GD~cvFeli~~~~~~f~V~IfR~~ 143 (146)
T 4i1k_A 111 FTLENNLGEGDVCVFELLRTRDFVLKVTAFRVN 143 (146)
T ss_dssp HHHHTTCCTTCEEEEEECSSSSCEEEEEEECCC
T ss_pred HHHHcCCCCCCEEEEEEecCCceEEEEEEEecc
Confidence 999999999999999999864 8999999874
No 4
>1yel_A AT1G16640; CESG, protein structure initiative, structural genomics, center for eukaryotic structural genomics, unknown function; NMR {Arabidopsis thaliana} SCOP: b.142.1.2
Probab=99.88 E-value=1.3e-22 Score=164.18 Aligned_cols=96 Identities=19% Similarity=0.288 Sum_probs=84.5
Q ss_pred cCCCCCeEEEEccCcccccCceEcCHHHHHhhCCCCC-eEEEEeCCCCEEEEEEEecc-ccccccchhhhhcccCCCCCC
Q 042542 261 LKPEKPSFLVFLRASNMQLNCVYVPNSFARKYFNGEE-CVTIQDSDGRKLAVKVKVSC-SKCLLTRWGKFFKKTNVKEGD 338 (359)
Q Consensus 261 ~~s~~p~f~~~m~~s~v~~~~l~iP~~F~~~~l~~~~-~i~L~~~~G~~W~v~l~~~~-~~~l~~GW~~F~~~n~L~~GD 338 (359)
..+++|.|.++|.+++ ....|.||.+|++.|.+... +|+|++++|+.|.|.+.... ..+|++||++||++|+|++||
T Consensus 4 ~~~~~p~F~K~l~~~~-~~~~L~IP~~F~~~~~~~~~~~v~L~~~~G~~W~v~~~~~~~~~~l~~GW~~Fv~~~~L~~GD 82 (104)
T 1yel_A 4 ADTGEVQFMKPFISEK-SSKSLEIPLGFNEYFPAPFPITVDLLDYSGRSWTVRMKKRGEKVFLTVGWENFVKDNNLEDGK 82 (104)
T ss_dssp CCCCCEEEEEECCHHH-HTTCEECCHHHHTTCCCCCCSEEEEEETTSCEEEEEEEEETTEEEECTTHHHHHHHHTCCTTC
T ss_pred CCCCCCCEEEEECCCC-ccceEECCHHHHHhcCccCCCEEEEECCCCCEEEEEEEEECCcEEEccChHHHHHHcCCCCCC
Confidence 4578999999999987 34569999999998888777 99999999999999997653 358999999999999999999
Q ss_pred EEEEEEEecceeEEEEEEEeC
Q 042542 339 ILFFEMIQMKNILLKVSVFNA 359 (359)
Q Consensus 339 ~cvFeli~~~~~~~~VhIfr~ 359 (359)
+|+|+++++ ..|+|+|||.
T Consensus 83 ~lvF~~~~~--~~f~V~If~~ 101 (104)
T 1yel_A 83 YLQFIYDRD--RTFYVIIYGH 101 (104)
T ss_dssp EEEEEECSS--SEEEEEEECS
T ss_pred EEEEEEcCC--CeEEEEEECC
Confidence 999999875 4699999984
No 5
>1wid_A DNA-binding protein RAV1; DNA-binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: b.142.1.2
Probab=99.79 E-value=2.2e-19 Score=150.81 Aligned_cols=97 Identities=19% Similarity=0.283 Sum_probs=83.0
Q ss_pred CCCCeEEEEccCcccccCc-eEcCHHHHHhhCCCCC--------eEEEEeCCCCEEEEEEEecc---ccccccchhhhhc
Q 042542 263 PEKPSFLVFLRASNMQLNC-VYVPNSFARKYFNGEE--------CVTIQDSDGRKLAVKVKVSC---SKCLLTRWGKFFK 330 (359)
Q Consensus 263 s~~p~f~~~m~~s~v~~~~-l~iP~~F~~~~l~~~~--------~i~L~~~~G~~W~v~l~~~~---~~~l~~GW~~F~~ 330 (359)
+..|+|.++|++|+|.+.. |.||++||++|||... .|+|+|.+|+.|.+++.++. .+.|++||.+||+
T Consensus 9 ~~~~~F~K~Lt~SDv~~~~rL~iPk~~a~~~lP~~~~~~~~~~~~l~l~D~~Gk~W~fr~~~~~~~~~~~Lt~GW~~FV~ 88 (130)
T 1wid_A 9 SAEALFEKAVTPSDVGKLNRLVIPKHHAEKHFPLPSSNVSVKGVLLNFEDVNGKVWRFRYSYWNSSQSYVLTKGWSRFVK 88 (130)
T ss_dssp CCEEEEEEECCTTTTSSSCCEEECHHHHTTTSCCCSSCCSSCCEEEEEEETTTEEEEEEEEEETTTTEEEEESSHHHHHH
T ss_pred CCcceEEEEEehHHcCCCCEEEeCHHHHHhhCCccccccCCCcEEEEEEeCCCCEEEEEEEEECCCCceEEcCChHHHHH
Confidence 5688999999999997644 9999999999998643 58889999999999998763 3589999999999
Q ss_pred ccCCCCCCEEEEEEEecceeEEEEEEEeC
Q 042542 331 KTNVKEGDILFFEMIQMKNILLKVSVFNA 359 (359)
Q Consensus 331 ~n~L~~GD~cvFeli~~~~~~~~VhIfr~ 359 (359)
+|+|++||+|+|+++++.+-.+.|.+-|+
T Consensus 89 ~~~L~~GD~~~F~~~~~~~~~l~I~~rr~ 117 (130)
T 1wid_A 89 EKNLRAGDVVSFSRSNGQDQQLYIGWKSR 117 (130)
T ss_dssp HTTCCTTCEEEEEECCSSSCCEEEEEECC
T ss_pred HcCCCCCCEEEEEEecCCCcEEEEEEEEC
Confidence 99999999999999986545577777663
No 6
>1wid_A DNA-binding protein RAV1; DNA-binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: b.142.1.2
Probab=99.58 E-value=1.4e-14 Score=121.50 Aligned_cols=98 Identities=15% Similarity=0.257 Sum_probs=82.3
Q ss_pred CCCCCceEEEccCCccc-cceeeCchHHHHhhCCCCC-------ceEEEECCCCCEEEEEEEEEC--CeeEEcccHHHHH
Q 042542 16 KKTNSLFFQVILAVTIE-DKKMKIPQNFVGRFGDELS-------YVATLTNPKGYVVRIGITKKE--GKIWFDDGWNEFV 85 (359)
Q Consensus 16 ~~~~p~F~k~i~~~~l~-~~~l~IP~~F~~~~~~~~~-------~~i~L~~~~g~~W~V~l~~~~--~~~~~~~GW~~F~ 85 (359)
.+..|.|.|+|+++++. ...|.||..|+..|.+.+. ..++|.|+.|+.|++.+.... ..++|+.||..||
T Consensus 8 ~~~~~~F~K~Lt~SDv~~~~rL~iPk~~a~~~lP~~~~~~~~~~~~l~l~D~~Gk~W~fr~~~~~~~~~~~Lt~GW~~FV 87 (130)
T 1wid_A 8 RSAEALFEKAVTPSDVGKLNRLVIPKHHAEKHFPLPSSNVSVKGVLLNFEDVNGKVWRFRYSYWNSSQSYVLTKGWSRFV 87 (130)
T ss_dssp CCCEEEEEEECCTTTTSSSCCEEECHHHHTTTSCCCSSCCSSCCEEEEEEETTTEEEEEEEEEETTTTEEEEESSHHHHH
T ss_pred CCCcceEEEEEehHHcCCCCEEEeCHHHHHhhCCccccccCCCcEEEEEEeCCCCEEEEEEEEECCCCceEEcCChHHHH
Confidence 35667899999999985 3689999999999988665 368899999999999987643 5789999999999
Q ss_pred hHcCCCCCCEEEEEEeec--ceEEEEEEcc
Q 042542 86 QYHSIGVGYFVVFQYRKN--SKFQVFVFNT 113 (359)
Q Consensus 86 ~~~~l~~Gd~lvF~~~g~--s~F~V~if~~ 113 (359)
++|+|++||+|+|.++.+ ..+.|.+-..
T Consensus 88 ~~~~L~~GD~~~F~~~~~~~~~l~I~~rr~ 117 (130)
T 1wid_A 88 KEKNLRAGDVVSFSRSNGQDQQLYIGWKSR 117 (130)
T ss_dssp HHTTCCTTCEEEEEECCSSSCCEEEEEECC
T ss_pred HHcCCCCCCEEEEEEecCCCcEEEEEEEEC
Confidence 999999999999999853 5677666544
No 7
>2glw_A PHS018, 92AA long hypothetical protein; RIFT barrel, bioinformatics, transcription; NMR {Pyrococcus horikoshii}
Probab=54.50 E-value=60 Score=24.46 Aligned_cols=69 Identities=12% Similarity=0.071 Sum_probs=47.2
Q ss_pred ceeeCchHHHHhhCCCCCceEEEEC---CCCC-EEEEEEEE--ECCeeEEcccHHHHHhHcCCCCCCEEEEEEeecce
Q 042542 34 KKMKIPQNFVGRFGDELSYVATLTN---PKGY-VVRIGITK--KEGKIWFDDGWNEFVQYHSIGVGYFVVFQYRKNSK 105 (359)
Q Consensus 34 ~~l~IP~~F~~~~~~~~~~~i~L~~---~~g~-~W~V~l~~--~~~~~~~~~GW~~F~~~~~l~~Gd~lvF~~~g~s~ 105 (359)
.+..||..+-+.++-.....|.+.. .+|. .......+ ..|.+.+- ++..+..+|+.||-|.|..+|...
T Consensus 15 gqvtiP~~iR~~LgI~~GD~V~v~~i~~~~g~~~~~~~~~~v~~kGqitIP---keiR~~lgi~~Gd~l~~~~~~~~~ 89 (92)
T 2glw_A 15 GRIIIPAGTRKFYGIEQGDFVEIKIVKYEGEEPKEGTFTARVGEQGSVIIP---KALRDVIGIKPGEVIEVLLLGHYK 89 (92)
T ss_dssp GEEECCHHHHHHHTCCTTCEEEEEEEEEETTEEEEEEEEEECCGGGEEECC---HHHHHHHTCCTTCEEEEEEEEEEC
T ss_pred CEEEecHHHHHHcCCCCCCEEEEEEEEecCCccceeEEEEEECcCceEECc---HHHHHHcCCCCCCEEEEEEeCcEE
Confidence 6899999999999877766666521 2333 12222222 23566665 588999999999999999887543
No 8
>2cbp_A Cucumber basic protein; electron transport, phytocyanin, type 1 copper protein; 1.80A {Cucumis sativus} SCOP: b.6.1.1
Probab=48.68 E-value=8.9 Score=29.34 Aligned_cols=32 Identities=25% Similarity=0.415 Sum_probs=22.9
Q ss_pred cchhh----hhcccCCCCCCEEEEEEEecceeEEEE
Q 042542 323 TRWGK----FFKKTNVKEGDILFFEMIQMKNILLKV 354 (359)
Q Consensus 323 ~GW~~----F~~~n~L~~GD~cvFeli~~~~~~~~V 354 (359)
.||.- -+..+..++||+++|++-....-+++|
T Consensus 9 ~GW~~~y~~Wa~~~~f~vGD~L~F~y~~~~hsV~~v 44 (96)
T 2cbp_A 9 GGWTFNTESWPKGKRFRAGDILLFNYNPSMHNVVVV 44 (96)
T ss_dssp GCSCSSCTTTTTTCCBCTTCEEEEECCTTTCCEEEE
T ss_pred CCCccChhhhccCceEcCCCEEEEEecCCCCEEEEE
Confidence 46642 367789999999999997544445555
No 9
>1x9u_A Umecyanin; cupredoxin, phytocyanin, copper binding site, beta barrel, electron transport; 1.80A {Armoracia rusticana} PDB: 1x9r_A
Probab=45.98 E-value=7.2 Score=31.03 Aligned_cols=28 Identities=18% Similarity=0.189 Sum_probs=21.0
Q ss_pred hhhcccCCCCCCEEEEEEEecceeEEEE
Q 042542 327 KFFKKTNVKEGDILFFEMIQMKNILLKV 354 (359)
Q Consensus 327 ~F~~~n~L~~GD~cvFeli~~~~~~~~V 354 (359)
.-+..+..++||+++|++.....-+++|
T Consensus 23 ~Wa~~~~f~vGD~L~F~y~~~~HsV~~V 50 (116)
T 1x9u_A 23 TWATGKTFRVGDELEFDFAAGMHDVAVV 50 (116)
T ss_dssp HHHTTCCEETTCEEEECCCTTTCCEEEE
T ss_pred hccccccCcCCCEEEEEecCCCCeEEEE
Confidence 3478889999999999997544445554
No 10
>1oa8_A Ataxin-1; RNA binding, high mobility group homology, HMG, RNA-binding, dimerization; 1.7A {Homo sapiens} SCOP: b.145.1.1
Probab=42.74 E-value=9.7 Score=31.11 Aligned_cols=23 Identities=13% Similarity=0.345 Sum_probs=18.2
Q ss_pred ccccchhhhhcc----------cCCCCCCEEEE
Q 042542 320 CLLTRWGKFFKK----------TNVKEGDILFF 342 (359)
Q Consensus 320 ~l~~GW~~F~~~----------n~L~~GD~cvF 342 (359)
+.++||..|.=+ ..|++||+|+-
T Consensus 92 V~gqGWsSc~P~~T~~~ygL~C~~L~vGDVCls 124 (133)
T 1oa8_A 92 VFGQGWSSCCPERTSQLFDLPCSKLSVGDVCIS 124 (133)
T ss_dssp ETTTEEEESCHHHHHHHHCCCCEECCTTCEEEE
T ss_pred EcCCcccccCHhHhhHhhCCcceecccCCEEEe
Confidence 679999887532 46899999985
No 11
>2l66_A SSO7C4, transcriptional regulator, ABRB family; DNA binding protein, transcription regulator; NMR {Sulfolobus solfataricus}
Probab=39.00 E-value=27 Score=23.31 Aligned_cols=23 Identities=17% Similarity=0.225 Sum_probs=20.1
Q ss_pred HHHHhHcCCCCCCEEEEEEeecc
Q 042542 82 NEFVQYHSIGVGYFVVFQYRKNS 104 (359)
Q Consensus 82 ~~F~~~~~l~~Gd~lvF~~~g~s 104 (359)
+++.+..+|+.||.+.|...++.
T Consensus 18 k~ir~~lgi~~Gd~v~i~~~~~~ 40 (53)
T 2l66_A 18 AKVRQKFQIKEGDLVKVTFDESE 40 (53)
T ss_dssp HHHHHHSCCCTTCEEEEEECSSS
T ss_pred HHHHHHcCcCCCCEEEEEEECCE
Confidence 57889999999999999998764
No 12
>1yfb_A Transition state regulatory protein ABRB; , homodimer, bioinformatics, swapped-hairpin barrel, transcription; NMR {Bacillus subtilis} SCOP: b.129.1.3 PDB: 1ysf_A 2k1n_A* 1z0r_A 2ro4_A 2fy9_A 2ro3_A
Probab=38.01 E-value=55 Score=22.55 Aligned_cols=29 Identities=10% Similarity=0.023 Sum_probs=23.7
Q ss_pred CCeeEEcccHHHHHhHcCCCCCCEEEEEEeec
Q 042542 72 EGKIWFDDGWNEFVQYHSIGVGYFVVFQYRKN 103 (359)
Q Consensus 72 ~~~~~~~~GW~~F~~~~~l~~Gd~lvF~~~g~ 103 (359)
.|++.|- ++..+..+|+.||.|.|..+++
T Consensus 21 kGqItIP---keiR~~Lgi~~Gd~l~i~~~~~ 49 (59)
T 1yfb_A 21 LGRVVIP---IELRRTLGIAEKDALEIYVDDE 49 (59)
T ss_dssp TCEEECC---HHHHHHTTCCTTCEEEEEEETT
T ss_pred CCEEEeC---HHHHHHcCCCCCCEEEEEEECC
Confidence 3556665 5788999999999999999876
No 13
>1x9u_A Umecyanin; cupredoxin, phytocyanin, copper binding site, beta barrel, electron transport; 1.80A {Armoracia rusticana} PDB: 1x9r_A
Probab=37.72 E-value=11 Score=29.99 Aligned_cols=26 Identities=15% Similarity=0.203 Sum_probs=19.8
Q ss_pred HHHhHcCCCCCCEEEEEEeec--ceEEE
Q 042542 83 EFVQYHSIGVGYFVVFQYRKN--SKFQV 108 (359)
Q Consensus 83 ~F~~~~~l~~Gd~lvF~~~g~--s~F~V 108 (359)
.-+.......||.|+|+|... ++..|
T Consensus 23 ~Wa~~~~f~vGD~L~F~y~~~~HsV~~V 50 (116)
T 1x9u_A 23 TWATGKTFRVGDELEFDFAAGMHDVAVV 50 (116)
T ss_dssp HHHTTCCEETTCEEEECCCTTTCCEEEE
T ss_pred hccccccCcCCCEEEEEecCCCCeEEEE
Confidence 457788999999999999843 44444
No 14
>2cbp_A Cucumber basic protein; electron transport, phytocyanin, type 1 copper protein; 1.80A {Cucumis sativus} SCOP: b.6.1.1
Probab=37.45 E-value=11 Score=28.70 Aligned_cols=24 Identities=17% Similarity=0.306 Sum_probs=18.6
Q ss_pred HhHcCCCCCCEEEEEEeec--ceEEE
Q 042542 85 VQYHSIGVGYFVVFQYRKN--SKFQV 108 (359)
Q Consensus 85 ~~~~~l~~Gd~lvF~~~g~--s~F~V 108 (359)
+.......||.|+|+|... +...|
T Consensus 19 a~~~~f~vGD~L~F~y~~~~hsV~~v 44 (96)
T 2cbp_A 19 PKGKRFRAGDILLFNYNPSMHNVVVV 44 (96)
T ss_dssp TTTCCBCTTCEEEEECCTTTCCEEEE
T ss_pred ccCceEcCCCEEEEEecCCCCEEEEE
Confidence 5667899999999999843 55554
No 15
>3o27_A Putative uncharacterized protein; swapped-hairpin fold, transcription factor, DNA binding PROT; 2.80A {Sulfolobus islandicus}
Probab=32.85 E-value=37 Score=24.21 Aligned_cols=27 Identities=15% Similarity=0.346 Sum_probs=19.4
Q ss_pred ceEcCHHHHHhhCCCCC---eEEEEeCCCC
Q 042542 281 CVYVPNSFARKYFNGEE---CVTIQDSDGR 307 (359)
Q Consensus 281 ~l~iP~~F~~~~l~~~~---~i~L~~~~G~ 307 (359)
|++||+.++++...... ++.+.+.+|.
T Consensus 26 YInIPaeI~kaLgIk~gD~fel~ve~kdge 55 (68)
T 3o27_A 26 YLLIPKDIAEALDIKPDDTFILNMEQKDGD 55 (68)
T ss_dssp EEEECHHHHHHTTCCTTCCEEEEEEEETTE
T ss_pred EEeCcHHHHHHhCCCCCCEEEEEEecCCCe
Confidence 49999999999865554 5555555664
No 16
>1f56_A Plantacyanin; cupredoxin, copper protein, beta barrel, plant protein; 2.05A {Spinacia oleracea} SCOP: b.6.1.1
Probab=31.48 E-value=28 Score=26.22 Aligned_cols=28 Identities=21% Similarity=0.402 Sum_probs=21.7
Q ss_pred hhhcccCCCCCCEEEEEEEecceeEEEE
Q 042542 327 KFFKKTNVKEGDILFFEMIQMKNILLKV 354 (359)
Q Consensus 327 ~F~~~n~L~~GD~cvFeli~~~~~~~~V 354 (359)
+-+..+..++||+++|.+-....-+++|
T Consensus 12 ~Wa~~~~f~vGD~L~F~y~~~~hsV~~v 39 (91)
T 1f56_A 12 NGARGKSFRAGDVLVFKYIKGQHNVVAV 39 (91)
T ss_dssp BSCTTCCBCTTCEEEEECCBTTBCEEEE
T ss_pred cCcCCccEeCCCEEEEEccCCCCeEEEE
Confidence 4577889999999999997654555655
No 17
>1ws8_A Mavicyanin; oxidized form, phytocyanin, cupredoxin, electron transport; 1.60A {Cucurbita pepo} SCOP: b.6.1.1 PDB: 1ws7_A
Probab=30.82 E-value=35 Score=26.62 Aligned_cols=27 Identities=22% Similarity=0.452 Sum_probs=20.5
Q ss_pred HHHHhHcCCCCCCEEEEEEeec--ceEEE
Q 042542 82 NEFVQYHSIGVGYFVVFQYRKN--SKFQV 108 (359)
Q Consensus 82 ~~F~~~~~l~~Gd~lvF~~~g~--s~F~V 108 (359)
..-+..+....||.|+|+|... ++..|
T Consensus 22 ~~Wa~~~~F~vGD~LvF~y~~~~hsV~~V 50 (109)
T 1ws8_A 22 AKWASSNKFHVGDSLLFNYNNKFHNVLQV 50 (109)
T ss_dssp HHHHHTSCBCTTCEEEEECCTTTCCEEEE
T ss_pred hHhhcCCcCcCCCEEEEeecCCCceEEEE
Confidence 3557788999999999999843 44444
No 18
>1jer_A Cucumber stellacyanin; electron transport, copper, glycoprotein, hydroxylation; 1.60A {Cucumis sativus} SCOP: b.6.1.1
Probab=29.72 E-value=16 Score=29.87 Aligned_cols=28 Identities=14% Similarity=0.227 Sum_probs=20.5
Q ss_pred hhhcccCCCCCCEEEEEEEecceeEEEE
Q 042542 327 KFFKKTNVKEGDILFFEMIQMKNILLKV 354 (359)
Q Consensus 327 ~F~~~n~L~~GD~cvFeli~~~~~~~~V 354 (359)
+-+..+..++||+++|.+-....-+++|
T Consensus 25 ~Wa~~~~F~vGD~LvF~y~~~~HsV~~V 52 (138)
T 1jer_A 25 QWAAGKTFRVGDSLQFNFPANAHNVHEM 52 (138)
T ss_dssp HHHHTCCEETTCEEEECCCTTTCCCEEE
T ss_pred hhhcCCcCcCCCEEEEeecCCCceEEEe
Confidence 4467889999999999996444445554
No 19
>1ws8_A Mavicyanin; oxidized form, phytocyanin, cupredoxin, electron transport; 1.60A {Cucurbita pepo} SCOP: b.6.1.1 PDB: 1ws7_A
Probab=24.58 E-value=42 Score=26.15 Aligned_cols=28 Identities=25% Similarity=0.362 Sum_probs=21.0
Q ss_pred hhhcccCCCCCCEEEEEEEecceeEEEE
Q 042542 327 KFFKKTNVKEGDILFFEMIQMKNILLKV 354 (359)
Q Consensus 327 ~F~~~n~L~~GD~cvFeli~~~~~~~~V 354 (359)
+-+..+..++||.++|.+-....-+++|
T Consensus 23 ~Wa~~~~F~vGD~LvF~y~~~~hsV~~V 50 (109)
T 1ws8_A 23 KWASSNKFHVGDSLLFNYNNKFHNVLQV 50 (109)
T ss_dssp HHHHTSCBCTTCEEEEECCTTTCCEEEE
T ss_pred HhhcCCcCcCCCEEEEeecCCCceEEEE
Confidence 4567889999999999997543445555
Done!