BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042544
(305 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3BUS|A Chain A, Crystal Structure Of Rebm
pdb|3BUS|B Chain B, Crystal Structure Of Rebm
Length = 273
Score = 84.0 bits (206), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 48/137 (35%), Positives = 69/137 (50%), Gaps = 5/137 (3%)
Query: 51 VNKYYDLVTSFYEFGWGESFHFAPRWKGE----SLRESIKRHEHFLALQLGLKSGQKVLD 106
V + YD T + WGE+ HF W+ S+ ++ R L ++SG +VLD
Sbjct: 9 VRQXYDDFTDPFARIWGENLHFG-YWEDAGADVSVDDATDRLTDEXIALLDVRSGDRVLD 67
Query: 107 VGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPD 166
VGCGIG P +A VTG++ + Q+ + AG+ F AD +PF D
Sbjct: 68 VGCGIGKPAVRLATARDVRVTGISISRPQVNQANARATAAGLANRVTFSYADAXDLPFED 127
Query: 167 NSFDAVYAIEATCHAPD 183
SFDAV+A+E+ H PD
Sbjct: 128 ASFDAVWALESLHHXPD 144
>pdb|2O57|A Chain A, Crystal Structure Of A Putative Sarcosine Dimethylglycine
Methyltransferase From Galdieria Sulphuraria
pdb|2O57|B Chain B, Crystal Structure Of A Putative Sarcosine Dimethylglycine
Methyltransferase From Galdieria Sulphuraria
pdb|2O57|C Chain C, Crystal Structure Of A Putative Sarcosine Dimethylglycine
Methyltransferase From Galdieria Sulphuraria
pdb|2O57|D Chain D, Crystal Structure Of A Putative Sarcosine Dimethylglycine
Methyltransferase From Galdieria Sulphuraria
Length = 297
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/176 (28%), Positives = 77/176 (43%), Gaps = 21/176 (11%)
Query: 49 DMVNKYYDLVTS--FYEFGWG-ESFH---FAPRWKGESLRESIKRHEHFLALQLG----L 98
D YYD S FY WG E H + + +RE+ R + +LA +L L
Sbjct: 21 DNAEIYYDDDDSDRFYFHVWGGEDIHVGLYKEPVDQDEIREASLRTDEWLASELAXTGVL 80
Query: 99 KSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKAD 158
+ K LD+G G GG R + + S+ LN Q R +E N AG+
Sbjct: 81 QRQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGS 140
Query: 159 FMKMPFPDNSFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVI 214
F+++P DNS+D +++ +A H+PD ++ ++C LK G I
Sbjct: 141 FLEIPCEDNSYDFIWSQDAFLHSPDKLKV-----------FQECARVLKPRGVXAI 185
>pdb|3BKW|A Chain A, Crystal Structure Of S-Adenosylmethionine Dependent
Methyltransferase (Np_104914.1) From Mesorhizobium Loti
At 1.60 A Resolution
pdb|3BKW|B Chain B, Crystal Structure Of S-Adenosylmethionine Dependent
Methyltransferase (Np_104914.1) From Mesorhizobium Loti
At 1.60 A Resolution
Length = 243
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 44/87 (50%), Gaps = 4/87 (4%)
Query: 101 GQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFM 160
G +++D+GCG G R + ++ V GL+ +E + R R AG D + +AD
Sbjct: 44 GLRIVDLGCGFGWFCRWAHEHGASYVLGLDLSEKXLARA----RAAGPDTGITYERADLD 99
Query: 161 KMPFPDNSFDAVYAIEATCHAPDAAEI 187
K+ P +SFD Y+ A + D A +
Sbjct: 100 KLHLPQDSFDLAYSSLALHYVEDVARL 126
>pdb|3L8D|A Chain A, Crystal Structure Of Methyltransferase From Bacillus
Thuringiensis
Length = 242
Score = 44.3 bits (103), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 46/80 (57%), Gaps = 5/80 (6%)
Query: 98 LKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKA 157
+K +VLDVGCG G ++++ +V G++ +E I +GKE R G D +F+K
Sbjct: 51 VKKEAEVLDVGCGDGYGTYKLSRTGYKAV-GVDISEVXIQKGKE--RGEGPD--LSFIKG 105
Query: 158 DFMKMPFPDNSFDAVYAIEA 177
D +PF + F+A+ AI +
Sbjct: 106 DLSSLPFENEQFEAIXAINS 125
>pdb|3UJ6|A Chain A, Semet Phosphoethanolamine Methyltransferase From
Plasmodium Falciparum In Complex With Sam And Po4
Length = 266
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 58/129 (44%), Gaps = 13/129 (10%)
Query: 52 NKYYDLVTSFYEFGWGESFHFAPRWKGESLRESIKRHEHFLALQLGLKSGQKVLDVGCGI 111
N+Y D YEF +GE++ + E+ K+ + + L KVLD+G G+
Sbjct: 17 NQYTDEGVKVYEFIFGENYISSGG------LEATKK----ILSDIELNENSKVLDIGSGL 66
Query: 112 GGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDA 171
GG I + G++ + E R +G +K F D + FP+N+FD
Sbjct: 67 GGGCXYINEKYGAHTHGIDICSNIVNXANE--RVSGNNKII-FEANDILTKEFPENNFDL 123
Query: 172 VYAIEATCH 180
+Y+ +A H
Sbjct: 124 IYSRDAILH 132
>pdb|3MGG|A Chain A, Crystal Structure Of Methyl Transferase From
Methanosarcina Mazei
pdb|3MGG|B Chain B, Crystal Structure Of Methyl Transferase From
Methanosarcina Mazei
Length = 276
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 52/104 (50%), Gaps = 8/104 (7%)
Query: 78 GESLRESIKRHEHFLALQLGLKS------GQKVLDVGCGIGGPLREIAQFS-STSVTGLN 130
G S RE+++ E L+ L G KVL+ GCGIG +A+ + +T ++
Sbjct: 9 GYSEREALRLSEQAETLEKLLHHDTVYPPGAKVLEAGCGIGAQTVILAKNNPDAEITSID 68
Query: 131 NNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYA 174
+ + + +E G+ K F++A+ +PF D+SFD ++
Sbjct: 69 ISPESLEKARENTEKNGI-KNVKFLQANIFSLPFEDSSFDHIFV 111
>pdb|3UJ7|A Chain A, Phosphoethanolamine Methyltransferase From Plasmodium
Falciparum In Complex With Sam And Po4
pdb|3UJ7|B Chain B, Phosphoethanolamine Methyltransferase From Plasmodium
Falciparum In Complex With Sam And Po4
pdb|3UJ8|A Chain A, Phosphoethanolamine Methyltransferase From Plasmodium
Falciparum In Complex With Sinefungin And Po4
pdb|3UJ9|A Chain A, Phosphoethanolamine Methyltransferase From Plasmodium
Falciparum In Complex With Phosphocholine
pdb|3UJA|A Chain A, Phosphoethanolamine Methyltransferase From Plasmodium
Falciparum In Complex With Phosphoethanolamine
pdb|3UJB|A Chain A, Phosphoethanolamine Methyltransferase From Plasmodium
Falciparum In Complex With Sah And Phosphoethanolamine
pdb|3UJB|B Chain B, Phosphoethanolamine Methyltransferase From Plasmodium
Falciparum In Complex With Sah And Phosphoethanolamine
pdb|4FGZ|A Chain A, Crystal Structure Of Phosphoethanolamine Methyltransferase
From Plasmodium Falciparum In Complex With Amodiaquine
pdb|4FGZ|B Chain B, Crystal Structure Of Phosphoethanolamine Methyltransferase
From Plasmodium Falciparum In Complex With Amodiaquine
Length = 266
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 58/129 (44%), Gaps = 13/129 (10%)
Query: 52 NKYYDLVTSFYEFGWGESFHFAPRWKGESLRESIKRHEHFLALQLGLKSGQKVLDVGCGI 111
N+Y D YEF +GE++ + E+ K+ + + L KVLD+G G+
Sbjct: 17 NQYTDEGVKVYEFIFGENYISSGG------LEATKK----ILSDIELNENSKVLDIGSGL 66
Query: 112 GGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDA 171
GG I + G++ + E R +G +K F D + FP+N+FD
Sbjct: 67 GGGCMYINEKYGAHTHGIDICSNIVNMANE--RVSGNNKII-FEANDILTKEFPENNFDL 123
Query: 172 VYAIEATCH 180
+Y+ +A H
Sbjct: 124 IYSRDAILH 132
>pdb|3UJD|A Chain A, Phosphoethanolamine Methyltransferase Mutant (Y19f) From
Plasmodium Falciparum In Complex With Phosphocholine
Length = 266
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 58/129 (44%), Gaps = 13/129 (10%)
Query: 52 NKYYDLVTSFYEFGWGESFHFAPRWKGESLRESIKRHEHFLALQLGLKSGQKVLDVGCGI 111
N++ D YEF +GE++ + E+ K+ + + L KVLD+G G+
Sbjct: 17 NQFTDEGVKVYEFIFGENYISSGG------LEATKK----ILSDIELNENSKVLDIGSGL 66
Query: 112 GGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDA 171
GG I + G++ + E R +G +K F D + FP+N+FD
Sbjct: 67 GGGCMYINEKYGAHTHGIDICSNIVNMANE--RVSGNNKII-FEANDILTKEFPENNFDL 123
Query: 172 VYAIEATCH 180
+Y+ +A H
Sbjct: 124 IYSRDAILH 132
>pdb|3UJC|A Chain A, Phosphoethanolamine Methyltransferase Mutant (H132a) From
Plasmodium Falciparum In Complex With Phosphocholine
Length = 266
Score = 40.8 bits (94), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 57/126 (45%), Gaps = 13/126 (10%)
Query: 52 NKYYDLVTSFYEFGWGESFHFAPRWKGESLRESIKRHEHFLALQLGLKSGQKVLDVGCGI 111
N+Y D YEF +GE++ + E+ K+ + + L KVLD+G G+
Sbjct: 17 NQYTDEGVKVYEFIFGENYISSGG------LEATKK----ILSDIELNENSKVLDIGSGL 66
Query: 112 GGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDA 171
GG I + G++ + E R +G +K F D + FP+N+FD
Sbjct: 67 GGGCMYINEKYGAHTHGIDICSNIVNMANE--RVSGNNKII-FEANDILTKEFPENNFDL 123
Query: 172 VYAIEA 177
+Y+ +A
Sbjct: 124 IYSRDA 129
>pdb|1VE3|A Chain A, Crystal Structure Of Ph0226 Protein From Pyrococcus
Horikoshii Ot3
pdb|1VE3|B Chain B, Crystal Structure Of Ph0226 Protein From Pyrococcus
Horikoshii Ot3
Length = 227
Score = 40.8 bits (94), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 54/118 (45%), Gaps = 6/118 (5%)
Query: 65 GWGESFHFAPRWKGESLRESIKRHEHF--LALQLGLKSGQKVLDVGCGIGGPLREIAQFS 122
G+ E + P + + +E R E L + K G KVLD+ CG+GG + +
Sbjct: 2 GFKEYYRVFPTYTDINSQEYRSRIETLEPLLXKYXKKRG-KVLDLACGVGG-FSFLLEDY 59
Query: 123 STSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIEATCH 180
V G++ +E I + +E + + F+ D K+ F D +FD V I++ H
Sbjct: 60 GFEVVGVDISEDXIRKAREYAK--SRESNVEFIVGDARKLSFEDKTFDYVIFIDSIVH 115
>pdb|3DH0|A Chain A, Crystal Structure Of A Sam Dependent Methyltransferase
From Aquifex Aeolicus
pdb|3DH0|B Chain B, Crystal Structure Of A Sam Dependent Methyltransferase
From Aquifex Aeolicus
Length = 219
Score = 37.4 bits (85), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 42/169 (24%), Positives = 69/169 (40%), Gaps = 30/169 (17%)
Query: 95 QLGLKSGQKVLDVGCGIGGPLREIAQF--SSTSVTGLNNNEYQITRGKELNRFAGVDKTC 152
+ GLK G VLDVG G G L +++ V ++ E + E G+ K
Sbjct: 32 EFGLKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGL-KNV 90
Query: 153 NFVKADFMKMPFPDNSFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQ---- 208
+K++ K+P PDN+ D ++ + T H ++ K LE LK+
Sbjct: 91 EVLKSEENKIPLPDNTVDFIF-MAFTFH--------------ELSEPLKFLEELKRVAKP 135
Query: 209 -AGFEVI-WEKDLAPDSPLP------WYLPLDTSHFSLSSFRLTSVGRF 249
A +I W+K+ P P W + L + R+ VG++
Sbjct: 136 FAYLAIIDWKKEERDKGPPPEEVYSEWEVGLILEDAGIRVGRVVEVGKY 184
>pdb|1WZN|A Chain A, Crystal Structure Of The Sam-Dependent Methyltransferase
From Pyrococcus Horikoshii Ot3
pdb|1WZN|B Chain B, Crystal Structure Of The Sam-Dependent Methyltransferase
From Pyrococcus Horikoshii Ot3
pdb|1WZN|C Chain C, Crystal Structure Of The Sam-Dependent Methyltransferase
From Pyrococcus Horikoshii Ot3
Length = 252
Score = 36.6 bits (83), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 53/115 (46%), Gaps = 18/115 (15%)
Query: 99 KSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNE--YQITRGKELNRFAGVDKTCNFVK 156
+ ++VLD+ CG G P E+A+ V GL+ +E ++ R K R ++ F++
Sbjct: 40 REVRRVLDLACGTGIPTLELAE-RGYEVVGLDLHEEMLRVARRKAKERNLKIE----FLQ 94
Query: 157 ADFMKMPFPDNSFDAVYAIEATCHAPDAAEIEIGDGLPDIRST-RKCLEALKQAG 210
D +++ F N FDAV +T D D+R K EALK G
Sbjct: 95 GDVLEIAFK-NEFDAVTMFFSTIMYFDEE---------DLRKLFSKVAEALKPGG 139
>pdb|1KPI|A Chain A, Crystal Structure Of Mycolic Acid Cyclopropane Synthase
Cmaa2 Complexed With Sah And Dddmab
pdb|3HEM|A Chain A, Structure Of Mycobacterium Tuberculosis Mycolic Acid
Cyclopropane Synthase Cmaa2 In Complex With Dioctylamine
Length = 302
Score = 36.2 bits (82), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 43/95 (45%), Gaps = 3/95 (3%)
Query: 51 VNKYYDLVTSFYEFGWGESFHFAPRW--KGESLRESIKRHEHFLAL-QLGLKSGQKVLDV 107
V +YD F++ S ++ + + + E + + LAL +L L+ G +LD+
Sbjct: 20 VRSHYDKSNEFFKLWLDPSMTYSCAYFERPDMTLEEAQYAKRKLALDKLNLEPGMTLLDI 79
Query: 108 GCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKEL 142
GCG G +R +V GL +E Q K +
Sbjct: 80 GCGWGSTMRHAVAEYDVNVIGLTLSENQYAHDKAM 114
>pdb|3SM3|A Chain A, Crystal Structure Of Sam-Dependent Methyltransferases
Q8puk2_metma From Methanosarcina Mazei. Northeast
Structural Genomics Consortium Target Mar262
Length = 235
Score = 35.4 bits (80), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 40/93 (43%), Gaps = 5/93 (5%)
Query: 98 LKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDK----TCN 153
L+ ++LD+GCG G E+A SVTG++ N I + R G+++
Sbjct: 28 LQEDDEILDIGCGSGKISLELAS-KGYSVTGIDINSEAIRLAETAARSPGLNQKTGGKAE 86
Query: 154 FVKADFMKMPFPDNSFDAVYAIEATCHAPDAAE 186
F + + F D+SFD PD E
Sbjct: 87 FKVENASSLSFHDSSFDFAVMQAFLTSVPDPKE 119
>pdb|2FK7|A Chain A, Crystal Structure Of Hma (Mmaa4) From Mycobacterium
Tuberculosis, Apo- Form
pdb|2FK8|A Chain A, Crystal Structure Of Hma (Mmaa4) From Mycobacterium
Tuberculosis Complexed With S-Adenosylmethionine
pdb|3HA3|A Chain A, Crystal Structure Of Hma (Mmaa4) From Mycobacterium
Tuberculosis Complexed With S-Adenosylhomocysteine
pdb|3HA5|A Chain A, Crystal Structure Of Hma (Mmaa4) From Mycobacterium
Tuberculosis Complexed With Sinefungin
pdb|3HA7|A Chain A, Crystal Structure Of Hma (Mmaa4) From Mycobacterium
Tuberculosis Complexed With
S-Adenosyl-N-Decyl-Aminoethyl (Sadae)
Length = 318
Score = 35.4 bits (80), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Query: 95 QLGLKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVD 149
+L LK G +LD+GCG G +R + +V GL ++ Q R +++ A +D
Sbjct: 85 KLDLKPGMTLLDIGCGWGTTMRRAVERFDVNVIGLTLSKNQHARCEQV--LASID 137
>pdb|1P91|A Chain A, Crystal Structure Of Rlma(I) Enzyme: 23s Rrna N1-G745
Methyltransferase (Northeast Structural Genomics
Consortium Target Er19)
pdb|1P91|B Chain B, Crystal Structure Of Rlma(I) Enzyme: 23s Rrna N1-G745
Methyltransferase (Northeast Structural Genomics
Consortium Target Er19)
Length = 269
Score = 35.4 bits (80), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 38/85 (44%), Gaps = 7/85 (8%)
Query: 104 VLDVGCGIGGPLREIAQ-FSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKM 162
VLD+GCG G A + GL+ ++ I + R+ V F A ++
Sbjct: 89 VLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAK--RYPQV----TFCVASSHRL 142
Query: 163 PFPDNSFDAVYAIEATCHAPDAAEI 187
PF D S DA+ I A C A + A +
Sbjct: 143 PFSDTSXDAIIRIYAPCKAEELARV 167
>pdb|2YQZ|A Chain A, Crystal Structure Of Hypothetical Methyltransferase
Ttha0223 From Thermus Thermophilus Hb8 Complexed With
S-adenosylmethionine
pdb|2YQZ|B Chain B, Crystal Structure Of Hypothetical Methyltransferase
Ttha0223 From Thermus Thermophilus Hb8 Complexed With
S-adenosylmethionine
pdb|2YR0|A Chain A, Crystal Structure Of Hypothetical Methyltransferase
Ttha0223 From Thermus Thermophilus Hb8
pdb|2YR0|B Chain B, Crystal Structure Of Hypothetical Methyltransferase
Ttha0223 From Thermus Thermophilus Hb8
Length = 263
Score = 35.0 bits (79), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
Query: 143 NRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKC 202
+ AGVD+ V+AD +P PD S V + PD ++ + + + ++
Sbjct: 79 QKIAGVDRKVQVVQADARAIPLPDESVHGVIVVHLWHLVPDWPKV-LAEAIRVLKPGGAL 137
Query: 203 LEALKQA 209
LE QA
Sbjct: 138 LEGWDQA 144
>pdb|1TPY|A Chain A, Structure Of The Cyclopropane Synthase Mmaa2 From
Mycobacterium Tuberculosis
Length = 287
Score = 35.0 bits (79), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 30/46 (65%), Gaps = 3/46 (6%)
Query: 92 LAL-QLGLKSGQKVLDVGCGIGGPLRE-IAQFSSTSVTGLNNNEYQ 135
LAL +LGL+ G +LD+GCG G +R IAQ+ +V GL ++ Q
Sbjct: 55 LALGKLGLQPGMTLLDIGCGWGATMRRAIAQY-DVNVVGLTLSKNQ 99
>pdb|1L1E|A Chain A, Crystal Structure Of Mycolic Acid Cyclopropane Synthase
Pcaa Complexed With S-Adenosyl-L-Homocysteine
pdb|1L1E|B Chain B, Crystal Structure Of Mycolic Acid Cyclopropane Synthase
Pcaa Complexed With S-Adenosyl-L-Homocysteine
Length = 287
Score = 34.7 bits (78), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Query: 92 LAL-QLGLKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQ 135
LAL +L L+ G +LD+GCG G +R + +V GL +E Q
Sbjct: 55 LALGKLNLEPGMTLLDIGCGWGATMRRAIEKYDVNVVGLTLSENQ 99
>pdb|1KP9|A Chain A, Crystal Structure Of Mycolic Acid Cyclopropane Synthase
Cmaa1, Apo-Form
pdb|1KP9|B Chain B, Crystal Structure Of Mycolic Acid Cyclopropane Synthase
Cmaa1, Apo-Form
pdb|1KPH|A Chain A, Crystal Structure Of Mycolic Acid Cyclopropane Synthase
Cmaa1 Complexed With Sah And Dddmab
pdb|1KPH|B Chain B, Crystal Structure Of Mycolic Acid Cyclopropane Synthase
Cmaa1 Complexed With Sah And Dddmab
pdb|1KPH|C Chain C, Crystal Structure Of Mycolic Acid Cyclopropane Synthase
Cmaa1 Complexed With Sah And Dddmab
pdb|1KPH|D Chain D, Crystal Structure Of Mycolic Acid Cyclopropane Synthase
Cmaa1 Complexed With Sah And Dddmab
Length = 287
Score = 34.7 bits (78), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 92 LAL-QLGLKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKEL 142
LAL +LGL+ G +LDVGCG G + + +V GL ++ Q ++L
Sbjct: 55 LALGKLGLQPGMTLLDVGCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQL 106
>pdb|3KKL|A Chain A, Crystal Structure Of Functionally Unknown Hsp33 From
Saccharomyces Cerevisiae
pdb|3KKL|B Chain B, Crystal Structure Of Functionally Unknown Hsp33 From
Saccharomyces Cerevisiae
Length = 244
Score = 34.3 bits (77), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 35/84 (41%), Gaps = 18/84 (21%)
Query: 175 IEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEKDLAPDSPLPWYLPLDTS 234
I A CH P + DGL DI++TR +E GF + E L D
Sbjct: 134 IAAICHGP-----LLFDGLIDIKTTRPLIEGKAITGFPLEGEIALGVDD----------- 177
Query: 235 HFSLSSFRLTSVGRFVTRNMVKAL 258
L S +LT+V R +N K L
Sbjct: 178 --ILRSRKLTTVERVANKNGAKYL 199
>pdb|1XXL|A Chain A, The Crystal Structure Of Ycgj Protein From Bacillus
Subitilis At 2.1 A Resolution
pdb|1XXL|B Chain B, The Crystal Structure Of Ycgj Protein From Bacillus
Subitilis At 2.1 A Resolution
pdb|2GLU|A Chain A, The Crystal Structure Of Ycgj Protein From Bacillus
Subitilis
pdb|2GLU|B Chain B, The Crystal Structure Of Ycgj Protein From Bacillus
Subitilis
Length = 239
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 28/127 (22%), Positives = 53/127 (41%), Gaps = 14/127 (11%)
Query: 99 KSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKAD 158
++ +VLD+G G G + + + G++ + + + GV+ F +
Sbjct: 20 RAEHRVLDIGAGAGHTALAFSPYVQECI-GVDATKEXVEVASSFAQEKGVENV-RFQQGT 77
Query: 159 FMKMPFPDNSFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEKD 218
+PFPD+SFD + A H D ++ R+ LKQ G ++ +
Sbjct: 78 AESLPFPDDSFDIITCRYAAHHFSDVR-----------KAVREVARVLKQDGRFLLVDH- 125
Query: 219 LAPDSPL 225
AP+ P+
Sbjct: 126 YAPEDPV 132
>pdb|1KPG|A Chain A, Crystal Structure Of Mycolic Acid Cyclopropane Synthase
Cmaa1 Complexed With Sah And Ctab
pdb|1KPG|B Chain B, Crystal Structure Of Mycolic Acid Cyclopropane Synthase
Cmaa1 Complexed With Sah And Ctab
pdb|1KPG|C Chain C, Crystal Structure Of Mycolic Acid Cyclopropane Synthase
Cmaa1 Complexed With Sah And Ctab
pdb|1KPG|D Chain D, Crystal Structure Of Mycolic Acid Cyclopropane Synthase
Cmaa1 Complexed With Sah And Ctab
Length = 287
Score = 33.1 bits (74), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 92 LAL-QLGLKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKEL 142
LAL +LGL+ G +LDVGCG G + +V GL ++ Q ++L
Sbjct: 55 LALGKLGLQPGXTLLDVGCGWGATXXRAVEKYDVNVVGLTLSKNQANHVQQL 106
>pdb|4F84|A Chain A, Structure Analysis Of Geranyl Diphosphate
Methyltransferase In Complex With Sam
pdb|4F85|A Chain A, Structure Analysis Of Geranyl Diphosphate
Methyltransferase
pdb|4F86|A Chain A, Structure Analysis Of Geranyl Diphosphate
Methyltransferase In Complex With Gpp And Sinefungin
pdb|4F86|B Chain B, Structure Analysis Of Geranyl Diphosphate
Methyltransferase In Complex With Gpp And Sinefungin
pdb|4F86|C Chain C, Structure Analysis Of Geranyl Diphosphate
Methyltransferase In Complex With Gpp And Sinefungin
pdb|4F86|D Chain D, Structure Analysis Of Geranyl Diphosphate
Methyltransferase In Complex With Gpp And Sinefungin
pdb|4F86|E Chain E, Structure Analysis Of Geranyl Diphosphate
Methyltransferase In Complex With Gpp And Sinefungin
pdb|4F86|F Chain F, Structure Analysis Of Geranyl Diphosphate
Methyltransferase In Complex With Gpp And Sinefungin
pdb|4F86|G Chain G, Structure Analysis Of Geranyl Diphosphate
Methyltransferase In Complex With Gpp And Sinefungin
pdb|4F86|H Chain H, Structure Analysis Of Geranyl Diphosphate
Methyltransferase In Complex With Gpp And Sinefungin
pdb|4F86|I Chain I, Structure Analysis Of Geranyl Diphosphate
Methyltransferase In Complex With Gpp And Sinefungin
pdb|4F86|J Chain J, Structure Analysis Of Geranyl Diphosphate
Methyltransferase In Complex With Gpp And Sinefungin
pdb|4F86|K Chain K, Structure Analysis Of Geranyl Diphosphate
Methyltransferase In Complex With Gpp And Sinefungin
pdb|4F86|L Chain L, Structure Analysis Of Geranyl Diphosphate
Methyltransferase In Complex With Gpp And Sinefungin
Length = 320
Score = 33.1 bits (74), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 36/89 (40%), Gaps = 1/89 (1%)
Query: 91 FLALQLG-LKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVD 149
FL LG + G ++D GCG GG + Q V G+ + Q G R G+D
Sbjct: 115 FLLDHLGPVGPGDTLVDAGCGRGGSMVMAHQRFGCKVEGVTLSAAQAEFGNRRARELGID 174
Query: 150 KTCNFVKADFMKMPFPDNSFDAVYAIEAT 178
+ + PF + A + E++
Sbjct: 175 DHVRSRVCNMLDTPFEKGTVAASWNNESS 203
>pdb|2FYT|A Chain A, Human Hmt1 Hnrnp Methyltransferase-Like 3 (S. Cerevisiae)
Protein
pdb|3SMQ|A Chain A, Crystal Structure Of Protein Arginine Methyltransferase 3
pdb|4HSG|A Chain A, Crystal Structure Of Human Prmt3 In Complex With An
Allosteric Inhibitor (Prmt3- Ktd)
Length = 340
Score = 32.7 bits (73), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 25/116 (21%), Positives = 51/116 (43%), Gaps = 9/116 (7%)
Query: 59 TSFYEFGWGESFHFAPRWKGESLRESIKRHEHFLALQLGLKSGQKVLDVGCGIGGPLREI 118
+S+ +G E + + ES R+ I ++ H ++ VLDVGCG G
Sbjct: 31 SSYGHYGIHEEM-LKDKIRTESYRDFIYQNPHIFKDKV-------VLDVGCGTGILSMFA 82
Query: 119 AQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYA 174
A+ + V G++ +E + + ++ R ++ T +K ++ P D + +
Sbjct: 83 AKAGAKKVLGVDQSEI-LYQAMDIIRLNKLEDTITLIKGKIEEVHLPVEKVDVIIS 137
>pdb|2GS9|A Chain A, Crystal Structure Of Tt1324 From Thermus Thermophilis Hb8
pdb|2GS9|B Chain B, Crystal Structure Of Tt1324 From Thermus Thermophilis Hb8
Length = 211
Score = 32.7 bits (73), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 40/97 (41%), Gaps = 10/97 (10%)
Query: 76 WKGESLRESIKRHEHFLALQLGLKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQ 135
W G L + E AL+ L G+ +L+VG G G LR + G+ +E
Sbjct: 13 WYGTPLGAYVIAEEER-ALKGLLPPGESLLEVGAGTGYWLR---RLPYPQKVGVEPSEAX 68
Query: 136 ITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAV 172
+ G+ +V+A +PFP SFD V
Sbjct: 69 LAVGRRRA------PEATWVRAWGEALPFPGESFDVV 99
>pdb|2WMY|A Chain A, Crystal Structure Of The Tyrosine Phosphatase Wzb From
Escherichia Coli K30 In Complex With Sulphate.
pdb|2WMY|B Chain B, Crystal Structure Of The Tyrosine Phosphatase Wzb From
Escherichia Coli K30 In Complex With Sulphate.
pdb|2WMY|C Chain C, Crystal Structure Of The Tyrosine Phosphatase Wzb From
Escherichia Coli K30 In Complex With Sulphate.
pdb|2WMY|D Chain D, Crystal Structure Of The Tyrosine Phosphatase Wzb From
Escherichia Coli K30 In Complex With Sulphate.
pdb|2WMY|E Chain E, Crystal Structure Of The Tyrosine Phosphatase Wzb From
Escherichia Coli K30 In Complex With Sulphate.
pdb|2WMY|F Chain F, Crystal Structure Of The Tyrosine Phosphatase Wzb From
Escherichia Coli K30 In Complex With Sulphate.
pdb|2WMY|G Chain G, Crystal Structure Of The Tyrosine Phosphatase Wzb From
Escherichia Coli K30 In Complex With Sulphate.
pdb|2WMY|H Chain H, Crystal Structure Of The Tyrosine Phosphatase Wzb From
Escherichia Coli K30 In Complex With Sulphate
Length = 150
Score = 31.6 bits (70), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 33/72 (45%), Gaps = 3/72 (4%)
Query: 10 ASGVGGKIDKTEVLSAVEKYEKYHVCYGGEEEERKANYTDMVNKYYDLVTSFYEFGWGES 69
++GVG +D T SA+ EK +C G R +T + + YDL+ +
Sbjct: 40 SAGVGALVDHTADESAIRVAEKNGLCLKG---HRGTKFTSALARQYDLLLVMEYSHLEQI 96
Query: 70 FHFAPRWKGESL 81
AP +G+++
Sbjct: 97 SRIAPEARGKTM 108
>pdb|2P8J|A Chain A, Crystal Structure Of S-Adenosylmethionine-Dependent
Methyltransferase (Np_349143.1) From Clostridium
Acetobutylicum At 2.00 A Resolution
pdb|2P8J|B Chain B, Crystal Structure Of S-Adenosylmethionine-Dependent
Methyltransferase (Np_349143.1) From Clostridium
Acetobutylicum At 2.00 A Resolution
Length = 209
Score = 31.2 bits (69), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 34/79 (43%), Gaps = 6/79 (7%)
Query: 104 VLDVGCGIGGPLREIAQFSST--SVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMK 161
VLD CG GG L ++ F G+ ++ Q+ + + +R N K D K
Sbjct: 27 VLD--CGAGGDLPPLSIFVEDGYKTYGIEISDLQLKKAENFSRENNF--KLNISKGDIRK 82
Query: 162 MPFPDNSFDAVYAIEATCH 180
+PF D S VY+ H
Sbjct: 83 LPFKDESXSFVYSYGTIFH 101
>pdb|3IX9|A Chain A, Crystal Structure Of Streptococcus Pneumoniae
Dihydrofolate Reductase - Sp9 Mutant
pdb|3IX9|B Chain B, Crystal Structure Of Streptococcus Pneumoniae
Dihydrofolate Reductase - Sp9 Mutant
Length = 190
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 4/32 (12%)
Query: 214 IWEKD----LAPDSPLPWYLPLDTSHFSLSSF 241
IW +D + D+ LPWYLP + HF ++
Sbjct: 28 IWAQDEEGVIGKDNRLPWYLPAELQHFKETTL 59
>pdb|2AS0|A Chain A, Crystal Structure Of Ph1915 (Apc 5817): A Hypothetical Rna
Methyltransferase
pdb|2AS0|B Chain B, Crystal Structure Of Ph1915 (Apc 5817): A Hypothetical Rna
Methyltransferase
Length = 396
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 34/71 (47%)
Query: 85 IKRHEHFLALQLGLKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNR 144
+ + E+ LAL+ ++ G +VLDV GG A + V G++ + I KE +
Sbjct: 202 LDQRENRLALEKWVQPGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAK 261
Query: 145 FAGVDKTCNFV 155
GV+ F+
Sbjct: 262 LNGVEDRXKFI 272
>pdb|1RW7|A Chain A, Crystal Structure Of Ydr533cp
Length = 243
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 5/51 (9%)
Query: 175 IEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEKDLAPDSPL 225
+ A CH P I DGL D ++ R +E GF + E L DS L
Sbjct: 134 VAAVCHGP-----AIFDGLTDKKTGRPLIEGKSITGFTDVGETILGVDSIL 179
>pdb|3CCF|A Chain A, Crystal Structure Of Putative Methyltransferase
(Yp_321342.1) From Anabaena Variabilis Atcc 29413 At
1.90 A Resolution
pdb|3CCF|B Chain B, Crystal Structure Of Putative Methyltransferase
(Yp_321342.1) From Anabaena Variabilis Atcc 29413 At
1.90 A Resolution
Length = 279
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 96 LGLKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKE 141
L + G+ +LD+GCG G +IAQ S V G +N I + ++
Sbjct: 53 LNPQPGEFILDLGCGTGQLTEKIAQ-SGAEVLGTDNAATXIEKARQ 97
>pdb|3MII|A Chain A, Crystal Structure Of Y0r391cpHSP33 FROM SACCHAROMYCES
CEREVISIAE
pdb|3MII|B Chain B, Crystal Structure Of Y0r391cpHSP33 FROM SACCHAROMYCES
CEREVISIAE
Length = 245
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 34/84 (40%), Gaps = 18/84 (21%)
Query: 175 IEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEKDLAPDSPLPWYLPLDTS 234
I A H P + DGL DI++TR +E GF + E L D
Sbjct: 142 IAAIXHGP-----LLFDGLIDIKTTRPLIEGKAITGFPLEGEIALGVDD----------- 185
Query: 235 HFSLSSFRLTSVGRFVTRNMVKAL 258
L S +LT+V R +N K L
Sbjct: 186 --ILRSRKLTTVERVANKNGAKYL 207
>pdb|1UOK|A Chain A, Crystal Structure Of B. Cereus Oligo-1,6-Glucosidase
Length = 558
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 190 GDGLPDIRSTRKCLEALKQAGFEVIW 215
GDG+ D+R L+ LK+ G +VIW
Sbjct: 24 GDGIGDLRGIISKLDYLKELGIDVIW 49
>pdb|3C9Z|A Chain A, Sambucus Nigra Agglutinin Ii (Sna-Ii), Tetragonal Crystal
Form
pdb|3CA0|A Chain A, Sambucus Nigra Agglutinin Ii (Sna-Ii), Hexagonal Crystal
Form
pdb|3CA1|A Chain A, Sambucus Nigra Agglutinin Ii (Sna-Ii)- Tetragonal Crystal
Form- Complexed To Galactose
pdb|3CA3|A Chain A, Crystal Structure Of Sambucus Nigra Agglutinin Ii
(Sna-Ii)-Tetragonal Crystal Form- Complexed To
N-Acetylgalactosamine
pdb|3CA4|A Chain A, Sambucus Nigra Agglutinin Ii, Tetragonal Crystal Form-
Complexed To Lactose
pdb|3CA5|A Chain A, Crystal Structure Of Sambucus Nigra Agglutinin Ii
(Sna-Ii)-Tetragonal Crystal Form- Complexed To Alpha1
Methylgalactose
pdb|3CAH|A Chain A, Sambucus Nigra Aggutinin Ii. Tetragonal Crystal Form-
Complexed To Fucose
pdb|3CA6|A Chain A, Sambucus Nigra Agglutinin Ii (Sna-Ii)- Tetragonal Crystal
Form- Complexed To Tn Antigen
Length = 258
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 36/74 (48%), Gaps = 2/74 (2%)
Query: 196 IRSTRKCLEA--LKQAGFEVIWEKDLAPDSPLPWYLPLDTSHFSLSSFRLTSVGRFVTRN 253
IRS KC+ A L VI+ A ++ + W +P+D S + SS + + R +R
Sbjct: 49 IRSMGKCMTANGLNNGSNIVIFNCSTAAENAIKWEVPIDGSIINPSSGLVMTAPRAASRT 108
Query: 254 MVKALEFVGLAPKG 267
++ + + A +G
Sbjct: 109 ILLLEDNIYAASQG 122
>pdb|2WJA|A Chain A, Crystal Structure Of The Tyrosine Phosphatase Wzb From
Escherichia Coli K30 In Complex With Phosphate.
pdb|2WJA|B Chain B, Crystal Structure Of The Tyrosine Phosphatase Wzb From
Escherichia Coli K30 In Complex With Phosphate
Length = 168
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/72 (25%), Positives = 32/72 (44%), Gaps = 3/72 (4%)
Query: 10 ASGVGGKIDKTEVLSAVEKYEKYHVCYGGEEEERKANYTDMVNKYYDLVTSFYEFGWGES 69
++GVG +D SA+ EK +C G R +T + + YDL+ +
Sbjct: 58 SAGVGALVDHAADESAIRVAEKNGLCLKG---HRGTKFTSALARQYDLLLVMEYSHLEQI 114
Query: 70 FHFAPRWKGESL 81
AP +G+++
Sbjct: 115 SRIAPEARGKTM 126
>pdb|3F4K|A Chain A, Crystal Structure Of A Probable Methyltransferase From
Bacteroides Thetaiotaomicron. Northeast Structural
Genomics Target Btr309
Length = 257
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 98 LKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLN 130
L K+ D+GCG GG +A + +TG++
Sbjct: 44 LTDDAKIADIGCGTGGQTLFLADYVKGQITGID 76
>pdb|3SVZ|A Chain A, Crystal Structure Of Apo Bt_2972, A Methyltransferase From
Bacteroides Thetaiotaomicron
pdb|3SVZ|B Chain B, Crystal Structure Of Apo Bt_2972, A Methyltransferase From
Bacteroides Thetaiotaomicron
pdb|3SXJ|A Chain A, Crystal Structure Of Complex Of Bt_2972 And Adomet, A
Methyltransferase From Bacteroides Thetaiotaomicron
pdb|3SXJ|B Chain B, Crystal Structure Of Complex Of Bt_2972 And Adomet, A
Methyltransferase From Bacteroides Thetaiotaomicron
pdb|3T0I|A Chain A, Crystal Structure Of Complex Of Bt_2972 And Adohcy, A
Methyltransferase From Bacteroides Thetaiotaomicron
pdb|3T0I|B Chain B, Crystal Structure Of Complex Of Bt_2972 And Adohcy, A
Methyltransferase From Bacteroides Thetaiotaomicron
Length = 263
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 98 LKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLN 130
L K+ D+GCG GG +A + +TG++
Sbjct: 50 LTDDAKIADIGCGTGGQTLFLADYVKGQITGID 82
>pdb|3PX3|A Chain A, Structure Of Tylm1 From Streptomyces Fradiae H123a Mutant
In Complex With Sah And Dtdp-Quip3n
pdb|3PX3|D Chain D, Structure Of Tylm1 From Streptomyces Fradiae H123a Mutant
In Complex With Sah And Dtdp-Quip3n
Length = 263
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 40/96 (41%), Gaps = 18/96 (18%)
Query: 44 KANYTDMVNKYYDLVTSFYEFGWGESFHFAPRWKGESLRESIKRHEHFLALQLGLKSGQK 103
+A+Y+ + + YDLV G G+ +H + L ++RH
Sbjct: 11 QADYSGEIAELYDLVHQ----GKGKDYH----REAADLAALVRRHS---------PKAAS 53
Query: 104 VLDVGCGIGGPLREIA-QFSSTSVTGLNNNEYQITR 138
+LDV CG G LR +A F + L+ + I R
Sbjct: 54 LLDVACGTGMHLRHLADSFGTVEGLELSADMLAIAR 89
>pdb|3PX2|A Chain A, Structure Of Tylm1 From Streptomyces Fradiae H123n Mutant
In Complex With Sah And Dtdp-Quip3n
pdb|3PX2|D Chain D, Structure Of Tylm1 From Streptomyces Fradiae H123n Mutant
In Complex With Sah And Dtdp-Quip3n
Length = 262
Score = 29.3 bits (64), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 38/86 (44%), Gaps = 18/86 (20%)
Query: 44 KANYTDMVNKYYDLVTSFYEFGWGESFHFAPRWKGESLRESIKRHEHFLALQLGLKSGQK 103
+A+Y+ + + YDLV G G+ +H + L ++RH
Sbjct: 11 QADYSGEIAELYDLVHQ----GKGKDYH----REAADLAALVRRHS---------PKAAS 53
Query: 104 VLDVGCGIGGPLREIAQFSSTSVTGL 129
+LDV CG G LR +A S +V GL
Sbjct: 54 LLDVACGTGMHLRHLAD-SFGTVEGL 78
>pdb|3PFG|A Chain A, X-Ray Crystal Structure The N,N-Dimethyltransferase Tylm1
From Streptomyces Fradiae In Complex With Sam And
Dtdp-Phenol
pdb|3PFH|A Chain A, X-Ray Crystal Structure The N,N-Dimethyltransferase Tylm1
From Streptomyces Fradiae In Complex With Sah And
Dtdp-Quip3n
pdb|3PFH|D Chain D, X-Ray Crystal Structure The N,N-Dimethyltransferase Tylm1
From Streptomyces Fradiae In Complex With Sah And
Dtdp-Quip3n
Length = 263
Score = 29.3 bits (64), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 38/87 (43%), Gaps = 18/87 (20%)
Query: 44 KANYTDMVNKYYDLVTSFYEFGWGESFHFAPRWKGESLRESIKRHEHFLALQLGLKSGQK 103
+A+Y+ + + YDLV G G+ +H + L ++RH
Sbjct: 11 QADYSGEIAELYDLVHQ----GKGKDYH----REAADLAALVRRHS---------PKAAS 53
Query: 104 VLDVGCGIGGPLREIAQFSSTSVTGLN 130
+LDV CG G LR +A S +V GL
Sbjct: 54 LLDVACGTGMHLRHLAD-SFGTVEGLE 79
>pdb|3G5L|A Chain A, Crystal Structure Of Putative S-Adenosylmethionine
Dependent Methyltransferase From Listeria Monocytogenes
pdb|3G5L|B Chain B, Crystal Structure Of Putative S-Adenosylmethionine
Dependent Methyltransferase From Listeria Monocytogenes
Length = 253
Score = 29.3 bits (64), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 3/73 (4%)
Query: 68 ESFHFAPRWKGESLRESIKRHEHFLALQLGLKSGQKVLDVGCGIGGPLREIAQFSSTSVT 127
E + PR K E L+ + + HE L L + + VLD+GCG G A+ + V
Sbjct: 15 EQYSQMPRSK-EGLKAAGEWHE--LKKMLPDFNQKTVLDLGCGFGWHCIYAAEHGAKKVL 71
Query: 128 GLNNNEYQITRGK 140
G++ +E +T K
Sbjct: 72 GIDLSERMLTEAK 84
>pdb|3DLI|A Chain A, Crystal Structure Of A Sam Dependent Methyltransferase
From Archaeoglobus Fulgidus
pdb|3DLI|B Chain B, Crystal Structure Of A Sam Dependent Methyltransferase
From Archaeoglobus Fulgidus
pdb|3DLI|C Chain C, Crystal Structure Of A Sam Dependent Methyltransferase
From Archaeoglobus Fulgidus
Length = 240
Score = 29.3 bits (64), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 52/119 (43%), Gaps = 22/119 (18%)
Query: 56 DLVTSFYEFGWGESFHFAPRWKGESLRESIKRHEHFLALQLGLKSGQKVLDVGCGIGGPL 115
D+ TS Y F + E F R E ++ ++R+ + K ++VLD+GCG G
Sbjct: 7 DIHTSDYYFLFEEKF----RGSRELVKARLRRYIPYF------KGCRRVLDIGCG-RGEF 55
Query: 116 REIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKM--PFPDNSFDAV 172
E+ + G++ NE I +F + N VK+D ++ PD D V
Sbjct: 56 LELCKEEGIESIGVDINEDMI-------KFC--EGKFNVVKSDAIEYLKSLPDKYLDGV 105
>pdb|3KKZ|A Chain A, Crystal Structure Of The Q5les9_bacfn Protein From
Bacteroides Fragilis. Northeast Structural Genomics
Consortium Target Bfr250.
pdb|3KKZ|B Chain B, Crystal Structure Of The Q5les9_bacfn Protein From
Bacteroides Fragilis. Northeast Structural Genomics
Consortium Target Bfr250
Length = 267
Score = 29.3 bits (64), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 17/71 (23%), Positives = 30/71 (42%)
Query: 104 VLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMP 163
+ D+GCG GG +A + VTGL+ I R +G+ + +P
Sbjct: 50 IADIGCGTGGQTXVLAGHVTGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSXDDLP 109
Query: 164 FPDNSFDAVYA 174
F + D +++
Sbjct: 110 FRNEELDLIWS 120
>pdb|1RI1|A Chain A, Structure And Mechanism Of Mrna Cap (Guanine N-7)
Methyltransferase
pdb|1RI2|A Chain A, Structure And Mechanism Of Mrna Cap (guanine N-7)
Methyltransferase
pdb|1RI3|A Chain A, Structure And Mechanism Of Mrna Cap (Guanine N-7)
Methyltransferase
pdb|1RI4|A Chain A, Structure And Mechanism Of Mrna Cap (Guanine N-7)
Methyltransferase
pdb|1RI5|A Chain A, Structure And Mechanism Of Mrna Cap (Guanine N-7)
Methyltransferase
pdb|1Z3C|A Chain A, Encephalitozooan Cuniculi Mrna Cap (Guanine-N7)
Methyltransferasein Complexed With Azoadomet
pdb|2HV9|A Chain A, Encephalitozoon Cuniculi Mrna Cap (Guanine-N7)
Methyltransferase In Complex With Sinefungin
Length = 298
Score = 28.9 bits (63), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 15/22 (68%)
Query: 94 LQLGLKSGQKVLDVGCGIGGPL 115
++L K G VLD+GCG GG L
Sbjct: 58 IRLYTKRGDSVLDLGCGKGGDL 79
>pdb|2YXD|A Chain A, Crystal Structure Of Cobalamin Biosynthesis Precorrin 8w
Decarboxylase (Cbit)
pdb|2YXD|B Chain B, Crystal Structure Of Cobalamin Biosynthesis Precorrin 8w
Decarboxylase (Cbit)
Length = 183
Score = 28.5 bits (62), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 95 QLGLKSGQKVLDVGCGIGGPLREIAQ 120
+L L V+DVGCG GG EIA+
Sbjct: 30 KLNLNKDDVVVDVGCGSGGXTVEIAK 55
>pdb|3BKX|A Chain A, Crystal Structure Of Cyclopropane-fatty-acyl-phospholipid
Synthase- Like Protein (yp_807781.1) From Lactobacillus
Casei Atcc 334 At 1.85 A Resolution
pdb|3BKX|B Chain B, Crystal Structure Of Cyclopropane-fatty-acyl-phospholipid
Synthase- Like Protein (yp_807781.1) From Lactobacillus
Casei Atcc 334 At 1.85 A Resolution
Length = 275
Score = 28.5 bits (62), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 34/80 (42%), Gaps = 10/80 (12%)
Query: 53 KYYDLVTSFYEFGWGESFHFAPRWKGESLRESIKRHEHFLALQLGLKSGQKVLDVGCGIG 112
K D +T G P +++ H +A +K G+K+L++GCG G
Sbjct: 4 KRLDYITDLXALG--------PTANARTIQRRQTAHRLAIAEAWQVKPGEKILEIGCGQG 55
Query: 113 GPLREIAQF--SSTSVTGLN 130
+A SS VTG++
Sbjct: 56 DLSAVLADQVGSSGHVTGID 75
>pdb|1NKV|A Chain A, X-Ray Structure Of Yjhp From E.Coli Northeast Structural
Genomics Research Consortium (Nesg) Target Er13
pdb|1NKV|B Chain B, X-Ray Structure Of Yjhp From E.Coli Northeast Structural
Genomics Research Consortium (Nesg) Target Er13
pdb|1NKV|C Chain C, X-Ray Structure Of Yjhp From E.Coli Northeast Structural
Genomics Research Consortium (Nesg) Target Er13
Length = 256
Score = 28.1 bits (61), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 30/67 (44%)
Query: 92 LALQLGLKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKT 151
L L K G ++LD+G G G L A+ + TG++ + + K GV +
Sbjct: 28 LGRVLRXKPGTRILDLGSGSGEXLCTWARDHGITGTGIDXSSLFTAQAKRRAEELGVSER 87
Query: 152 CNFVKAD 158
+F+ D
Sbjct: 88 VHFIHND 94
>pdb|3Q7E|A Chain A, Crystal Structure Of Rat Protein Arginine
Methyltransferase 1 (Prmt1) M48l Mutant
Length = 349
Score = 28.1 bits (61), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 30/129 (23%), Positives = 52/129 (40%), Gaps = 18/129 (13%)
Query: 29 YEKYHVCYGGEEEERKANYTDMVNK--YYDLVTSFYEFGWGESFHFAPRWKGESLRESIK 86
++ +H+ G E K N DM +K Y+D S+ FG E + + R S+
Sbjct: 4 HDHHHMSCGQAESSEKPNAEDMTSKDYYFD---SYAHFGIHEEL-LKDEVRTLTYRNSMF 59
Query: 87 RHEHFLALQLGLKSGQKVLDVGCGIGGPLREIAQFSSTSVTG-----LNNNEYQITRGKE 141
+ H + VLDVG G G A+ + V G +++ +I + +
Sbjct: 60 HNRHLF-------KDKVVLDVGSGTGILCMFAAKAGARKVIGIECSSISDYAVKIVKANK 112
Query: 142 LNRFAGVDK 150
L+ + K
Sbjct: 113 LDHVVTIIK 121
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,928,126
Number of Sequences: 62578
Number of extensions: 374461
Number of successful extensions: 1153
Number of sequences better than 100.0: 53
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 31
Number of HSP's that attempted gapping in prelim test: 1116
Number of HSP's gapped (non-prelim): 53
length of query: 305
length of database: 14,973,337
effective HSP length: 98
effective length of query: 207
effective length of database: 8,840,693
effective search space: 1830023451
effective search space used: 1830023451
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)