Query 042544
Match_columns 305
No_of_seqs 356 out of 3257
Neff 9.7
Searched_HMMs 46136
Date Fri Mar 29 07:12:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042544.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042544hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG2226 UbiE Methylase involve 100.0 1.3E-29 2.8E-34 209.4 15.6 226 39-302 8-238 (238)
2 PF01209 Ubie_methyltran: ubiE 100.0 4E-29 8.6E-34 208.9 7.7 222 40-301 5-233 (233)
3 PLN02244 tocopherol O-methyltr 99.9 8.7E-25 1.9E-29 193.7 20.7 165 42-217 52-224 (340)
4 KOG1540 Ubiquinone biosynthesi 99.9 4.4E-24 9.6E-29 173.1 16.5 208 40-284 58-278 (296)
5 PLN02233 ubiquinone biosynthes 99.9 5.3E-24 1.2E-28 182.0 17.3 224 39-300 30-260 (261)
6 PF02353 CMAS: Mycolic acid cy 99.9 8.9E-24 1.9E-28 180.5 15.0 160 48-219 7-169 (273)
7 COG2230 Cfa Cyclopropane fatty 99.9 2.7E-23 5.9E-28 174.7 15.7 163 46-220 15-180 (283)
8 TIGR02752 MenG_heptapren 2-hep 99.9 8.6E-23 1.9E-27 172.2 17.5 224 41-301 4-231 (231)
9 PRK05785 hypothetical protein; 99.9 2.2E-21 4.9E-26 162.2 14.9 213 41-302 8-225 (226)
10 PRK15451 tRNA cmo(5)U34 methyl 99.9 1E-21 2.3E-26 166.8 11.4 188 98-304 54-245 (247)
11 COG2227 UbiG 2-polyprenyl-3-me 99.8 5.8E-21 1.2E-25 155.3 10.6 105 100-218 59-163 (243)
12 PRK11705 cyclopropane fatty ac 99.8 6.9E-20 1.5E-24 164.2 16.9 156 47-218 112-269 (383)
13 PLN02396 hexaprenyldihydroxybe 99.8 4.5E-20 9.8E-25 160.9 11.8 107 99-217 130-236 (322)
14 PTZ00098 phosphoethanolamine N 99.8 2.6E-19 5.7E-24 153.2 14.9 115 92-218 44-158 (263)
15 PRK00216 ubiE ubiquinone/menaq 99.8 1E-18 2.2E-23 148.1 17.5 189 94-302 45-239 (239)
16 PRK11036 putative S-adenosyl-L 99.8 4E-19 8.7E-24 151.9 13.4 114 91-217 36-150 (255)
17 TIGR00740 methyltransferase, p 99.8 3.6E-19 7.8E-24 150.8 12.9 184 99-301 52-239 (239)
18 PF12847 Methyltransf_18: Meth 99.8 4.2E-19 9.2E-24 132.4 11.7 107 100-216 1-111 (112)
19 PF08241 Methyltransf_11: Meth 99.8 1.1E-19 2.3E-24 131.3 7.8 95 105-214 1-95 (95)
20 PLN02490 MPBQ/MSBQ methyltrans 99.8 1.1E-18 2.4E-23 152.7 15.4 162 99-305 112-284 (340)
21 PLN02336 phosphoethanolamine N 99.8 2.6E-18 5.7E-23 159.7 16.5 116 90-218 256-371 (475)
22 PRK10258 biotin biosynthesis p 99.8 3.6E-18 7.9E-23 145.8 16.1 113 87-217 29-141 (251)
23 TIGR01934 MenG_MenH_UbiE ubiqu 99.8 6.8E-18 1.5E-22 141.4 16.5 140 46-217 3-144 (223)
24 PF13847 Methyltransf_31: Meth 99.8 2.4E-18 5.3E-23 135.5 11.4 106 99-217 2-111 (152)
25 PRK11207 tellurite resistance 99.8 7.9E-18 1.7E-22 138.1 14.4 110 95-216 25-134 (197)
26 PRK15068 tRNA mo(5)U34 methylt 99.8 1.5E-17 3.2E-22 146.1 16.4 113 93-217 115-227 (322)
27 KOG4300 Predicted methyltransf 99.8 1.9E-17 4.1E-22 130.6 15.2 107 100-218 76-184 (252)
28 KOG1270 Methyltransferases [Co 99.8 1.1E-18 2.4E-23 142.8 7.7 102 101-217 90-196 (282)
29 PRK14103 trans-aconitate 2-met 99.8 6.6E-18 1.4E-22 144.4 12.6 105 92-216 21-126 (255)
30 PRK08317 hypothetical protein; 99.8 5.6E-17 1.2E-21 137.3 17.2 118 88-218 7-126 (241)
31 PRK11873 arsM arsenite S-adeno 99.8 1.3E-17 2.7E-22 144.1 12.8 111 96-218 73-185 (272)
32 TIGR00452 methyltransferase, p 99.7 1.6E-17 3.4E-22 144.4 12.9 114 93-218 114-227 (314)
33 TIGR00477 tehB tellurite resis 99.7 2.1E-17 4.5E-22 135.4 13.0 109 95-216 25-133 (195)
34 PRK01683 trans-aconitate 2-met 99.7 9.4E-17 2E-21 137.6 13.4 109 90-216 21-130 (258)
35 PF13489 Methyltransf_23: Meth 99.7 8.2E-18 1.8E-22 133.6 6.1 99 98-219 20-118 (161)
36 PRK00107 gidB 16S rRNA methylt 99.7 2.5E-16 5.5E-21 127.3 14.6 103 97-216 42-145 (187)
37 PF13649 Methyltransf_25: Meth 99.7 1.5E-17 3.2E-22 121.7 5.9 96 104-210 1-101 (101)
38 PF03848 TehB: Tellurite resis 99.7 2.1E-16 4.6E-21 126.9 12.1 109 96-217 26-134 (192)
39 PRK12335 tellurite resistance 99.7 2.8E-16 6.1E-21 136.5 13.6 104 100-216 120-223 (287)
40 TIGR02716 C20_methyl_CrtF C-20 99.7 4.7E-16 1E-20 136.5 15.0 120 89-220 138-258 (306)
41 smart00828 PKS_MT Methyltransf 99.7 1.5E-16 3.3E-21 133.5 11.3 104 102-217 1-105 (224)
42 TIGR02021 BchM-ChlM magnesium 99.7 3.1E-16 6.7E-21 131.1 12.7 114 87-213 40-155 (219)
43 PRK06922 hypothetical protein; 99.7 2.5E-16 5.5E-21 146.0 13.1 115 95-220 413-541 (677)
44 KOG1269 SAM-dependent methyltr 99.7 1.3E-16 2.8E-21 140.5 9.9 269 25-304 35-359 (364)
45 PRK13944 protein-L-isoaspartat 99.7 6.3E-16 1.4E-20 127.7 13.2 111 89-216 61-173 (205)
46 PRK08287 cobalt-precorrin-6Y C 99.7 1.8E-15 3.8E-20 123.4 14.5 109 91-216 22-131 (187)
47 COG4976 Predicted methyltransf 99.7 6E-17 1.3E-21 129.7 4.9 194 50-303 86-287 (287)
48 COG4106 Tam Trans-aconitate me 99.7 3.4E-16 7.4E-21 124.5 8.7 105 95-217 25-130 (257)
49 TIGR03587 Pse_Me-ase pseudamin 99.7 2.9E-15 6.3E-20 123.2 14.4 102 98-217 41-143 (204)
50 PRK00377 cbiT cobalt-precorrin 99.7 7.9E-16 1.7E-20 126.5 11.0 110 93-216 33-145 (198)
51 PF07021 MetW: Methionine bios 99.7 7.1E-16 1.5E-20 122.1 9.9 98 98-217 11-110 (193)
52 TIGR00138 gidB 16S rRNA methyl 99.7 1.7E-15 3.8E-20 122.2 12.2 100 100-216 42-142 (181)
53 TIGR02469 CbiT precorrin-6Y C5 99.7 3.2E-15 6.9E-20 113.4 13.0 111 91-216 10-122 (124)
54 PF05401 NodS: Nodulation prot 99.6 1.6E-15 3.4E-20 120.4 11.4 114 90-216 33-146 (201)
55 smart00138 MeTrc Methyltransfe 99.6 7.4E-16 1.6E-20 131.8 10.2 111 97-216 96-242 (264)
56 TIGR02072 BioC biotin biosynth 99.6 2.2E-15 4.8E-20 127.5 12.9 102 100-217 34-136 (240)
57 PRK13942 protein-L-isoaspartat 99.6 4.9E-15 1.1E-19 122.9 14.1 111 88-216 64-176 (212)
58 PF08242 Methyltransf_12: Meth 99.6 2E-17 4.3E-22 120.6 -0.6 96 105-212 1-99 (99)
59 TIGR03840 TMPT_Se_Te thiopurin 99.6 6.7E-15 1.5E-19 121.6 12.7 109 99-217 33-153 (213)
60 PRK07580 Mg-protoporphyrin IX 99.6 1.2E-14 2.6E-19 122.5 14.0 97 98-207 61-157 (230)
61 TIGR00080 pimt protein-L-isoas 99.6 1.2E-14 2.6E-19 121.1 13.8 110 89-216 66-177 (215)
62 KOG1271 Methyltransferases [Ge 99.6 2E-14 4.3E-19 111.3 13.5 138 74-220 40-185 (227)
63 PRK00121 trmB tRNA (guanine-N( 99.6 4.8E-15 1E-19 122.0 10.9 113 100-216 40-156 (202)
64 PRK06202 hypothetical protein; 99.6 7.4E-15 1.6E-19 123.8 12.2 105 97-216 57-166 (232)
65 PRK05134 bifunctional 3-demeth 99.6 3.2E-14 7E-19 120.1 15.6 113 90-216 38-151 (233)
66 PLN02336 phosphoethanolamine N 99.6 8.9E-15 1.9E-19 136.1 12.9 115 92-219 29-145 (475)
67 PLN02585 magnesium protoporphy 99.6 3.7E-14 7.9E-19 123.6 15.5 83 100-186 144-230 (315)
68 PRK11088 rrmA 23S rRNA methylt 99.6 2.5E-14 5.3E-19 123.4 14.2 94 100-217 85-182 (272)
69 PF08003 Methyltransf_9: Prote 99.6 1.6E-14 3.5E-19 121.9 12.1 111 99-221 114-224 (315)
70 PRK04266 fibrillarin; Provisio 99.6 2.7E-14 5.8E-19 119.0 12.9 104 95-215 67-175 (226)
71 PRK13255 thiopurine S-methyltr 99.6 5E-14 1.1E-18 116.9 14.2 111 97-217 34-156 (218)
72 TIGR00091 tRNA (guanine-N(7)-) 99.6 1.2E-14 2.7E-19 118.9 10.1 113 100-216 16-132 (194)
73 PLN03075 nicotianamine synthas 99.6 5.5E-14 1.2E-18 120.1 14.2 108 99-216 122-233 (296)
74 PF05175 MTS: Methyltransferas 99.6 2.3E-14 5.1E-19 114.8 10.3 109 100-216 31-140 (170)
75 PRK15001 SAM-dependent 23S rib 99.6 6.6E-14 1.4E-18 124.5 13.6 118 89-216 217-340 (378)
76 TIGR00537 hemK_rel_arch HemK-r 99.5 1E-13 2.3E-18 112.1 12.8 115 97-216 16-140 (179)
77 COG2518 Pcm Protein-L-isoaspar 99.5 1.5E-13 3.2E-18 110.8 13.3 110 89-217 61-170 (209)
78 PRK14121 tRNA (guanine-N(7)-)- 99.5 1E-13 2.2E-18 122.8 12.9 117 95-217 117-236 (390)
79 TIGR03438 probable methyltrans 99.5 1.6E-13 3.4E-18 119.9 14.0 124 83-217 48-178 (301)
80 PRK00312 pcm protein-L-isoaspa 99.5 1.9E-13 4.2E-18 113.6 13.9 108 90-216 68-175 (212)
81 PLN02232 ubiquinone biosynthes 99.5 2.5E-14 5.5E-19 113.3 8.0 152 127-299 1-158 (160)
82 COG2242 CobL Precorrin-6B meth 99.5 2E-13 4.4E-18 107.6 12.5 111 90-217 24-136 (187)
83 KOG1541 Predicted protein carb 99.5 3.1E-14 6.7E-19 113.6 7.0 117 92-215 40-159 (270)
84 TIGR01983 UbiG ubiquinone bios 99.5 3.8E-13 8.2E-18 112.9 14.1 104 100-216 45-149 (224)
85 PRK13256 thiopurine S-methyltr 99.5 6.1E-13 1.3E-17 110.0 14.6 115 96-220 39-167 (226)
86 PF13659 Methyltransf_26: Meth 99.5 5.4E-14 1.2E-18 105.6 7.7 112 101-216 1-115 (117)
87 TIGR00406 prmA ribosomal prote 99.5 1.1E-13 2.5E-18 120.1 10.7 102 99-216 158-259 (288)
88 TIGR01177 conserved hypothetic 99.5 3E-13 6.6E-18 119.7 13.5 117 90-216 172-294 (329)
89 PRK14968 putative methyltransf 99.5 5.3E-13 1.1E-17 108.8 13.9 119 96-216 19-148 (188)
90 COG2519 GCD14 tRNA(1-methylade 99.5 7.8E-13 1.7E-17 108.9 13.9 111 90-217 84-196 (256)
91 PTZ00146 fibrillarin; Provisio 99.5 5.7E-13 1.2E-17 113.5 13.5 105 95-215 127-236 (293)
92 PRK07402 precorrin-6B methylas 99.5 7.4E-13 1.6E-17 108.7 13.6 111 90-216 30-142 (196)
93 PRK09489 rsmC 16S ribosomal RN 99.5 5.4E-13 1.2E-17 117.9 13.6 116 91-216 187-303 (342)
94 PF05891 Methyltransf_PK: AdoM 99.5 1.1E-13 2.3E-18 111.9 8.0 158 45-220 3-165 (218)
95 COG4123 Predicted O-methyltran 99.5 2.7E-13 5.9E-18 112.5 10.3 125 92-216 36-170 (248)
96 PF01135 PCMT: Protein-L-isoas 99.5 1.5E-13 3.3E-18 112.8 8.8 113 87-217 59-173 (209)
97 PRK14967 putative methyltransf 99.5 9.3E-13 2E-17 110.3 13.3 119 96-217 32-160 (223)
98 PRK13943 protein-L-isoaspartat 99.5 5E-13 1.1E-17 116.8 12.0 109 90-216 70-180 (322)
99 TIGR03533 L3_gln_methyl protei 99.5 1.3E-12 2.7E-17 113.1 13.9 116 99-216 120-251 (284)
100 TIGR02081 metW methionine bios 99.5 6.4E-13 1.4E-17 108.9 11.1 95 99-215 12-108 (194)
101 TIGR00536 hemK_fam HemK family 99.4 8.4E-13 1.8E-17 114.5 11.9 115 101-216 115-244 (284)
102 PRK00517 prmA ribosomal protei 99.4 4.4E-13 9.6E-18 114.1 9.1 97 98-216 117-213 (250)
103 PRK11805 N5-glutamine S-adenos 99.4 1E-12 2.2E-17 114.8 11.2 114 102-216 135-263 (307)
104 TIGR00563 rsmB ribosomal RNA s 99.4 2.3E-12 5E-17 118.0 13.3 131 90-220 228-372 (426)
105 PRK11188 rrmJ 23S rRNA methylt 99.4 2.9E-12 6.3E-17 105.9 12.4 107 98-216 49-165 (209)
106 PF00891 Methyltransf_2: O-met 99.4 2.8E-12 6.2E-17 108.7 11.9 112 90-221 90-204 (241)
107 TIGR03534 RF_mod_PrmC protein- 99.4 6.8E-12 1.5E-16 107.1 13.9 115 100-216 87-217 (251)
108 PRK14901 16S rRNA methyltransf 99.4 4.5E-12 9.7E-17 116.3 13.4 128 91-219 243-387 (434)
109 PRK14903 16S rRNA methyltransf 99.4 4.7E-12 1E-16 115.7 13.0 128 92-220 229-370 (431)
110 TIGR00446 nop2p NOL1/NOP2/sun 99.4 5.3E-12 1.2E-16 108.2 12.6 124 95-219 66-202 (264)
111 PRK14904 16S rRNA methyltransf 99.4 4E-12 8.6E-17 117.0 11.8 123 93-219 243-380 (445)
112 COG2264 PrmA Ribosomal protein 99.4 2.8E-12 6.1E-17 109.3 9.8 103 99-216 161-263 (300)
113 COG2813 RsmC 16S RNA G1207 met 99.4 9.9E-12 2.1E-16 105.4 12.9 119 89-216 147-266 (300)
114 PF06325 PrmA: Ribosomal prote 99.4 2.3E-12 4.9E-17 110.9 9.1 101 98-216 159-259 (295)
115 PRK09328 N5-glutamine S-adenos 99.4 1.5E-11 3.3E-16 106.4 14.2 120 95-216 103-238 (275)
116 PRK04457 spermidine synthase; 99.4 4.1E-12 8.9E-17 108.6 10.3 110 98-215 64-176 (262)
117 PRK10901 16S rRNA methyltransf 99.4 4.5E-12 9.7E-17 116.1 11.2 126 92-219 236-375 (427)
118 KOG3010 Methyltransferase [Gen 99.4 1.6E-12 3.6E-17 105.5 7.3 104 99-215 31-136 (261)
119 PF03291 Pox_MCEL: mRNA cappin 99.4 4.8E-12 1E-16 111.0 10.7 112 100-218 62-188 (331)
120 KOG2361 Predicted methyltransf 99.4 2.5E-12 5.5E-17 104.4 8.1 155 103-285 74-235 (264)
121 KOG1975 mRNA cap methyltransfe 99.3 9.8E-12 2.1E-16 104.9 10.9 161 41-217 66-238 (389)
122 PLN02781 Probable caffeoyl-CoA 99.3 8.3E-12 1.8E-16 105.0 10.4 108 95-216 63-178 (234)
123 PRK14966 unknown domain/N5-glu 99.3 2E-11 4.4E-16 108.9 13.3 114 99-216 250-381 (423)
124 PF08704 GCD14: tRNA methyltra 99.3 1.8E-11 3.9E-16 102.6 12.2 114 90-219 30-149 (247)
125 smart00650 rADc Ribosomal RNA 99.3 1.1E-11 2.4E-16 99.3 10.2 84 91-178 4-87 (169)
126 PRK01544 bifunctional N5-gluta 99.3 5.3E-12 1.2E-16 117.4 9.6 116 100-216 138-269 (506)
127 PF12147 Methyltransf_20: Puta 99.3 1.2E-10 2.5E-15 97.8 16.1 172 99-301 134-311 (311)
128 PRK14902 16S rRNA methyltransf 99.3 1.3E-11 2.8E-16 113.8 11.5 126 91-218 241-381 (444)
129 cd02440 AdoMet_MTases S-adenos 99.3 1.9E-11 4.2E-16 88.7 10.2 101 103-215 1-103 (107)
130 PRK00811 spermidine synthase; 99.3 1.9E-11 4.2E-16 105.7 10.2 110 99-215 75-190 (283)
131 TIGR00438 rrmJ cell division p 99.3 2.3E-11 4.9E-16 99.2 9.7 105 95-216 27-146 (188)
132 PF06080 DUF938: Protein of un 99.3 3.9E-11 8.4E-16 96.7 10.4 105 103-216 28-141 (204)
133 PF05724 TPMT: Thiopurine S-me 99.3 1.6E-11 3.6E-16 101.7 8.3 111 96-216 33-155 (218)
134 PRK13168 rumA 23S rRNA m(5)U19 99.3 4.8E-11 1E-15 109.9 12.0 92 82-175 279-374 (443)
135 PF02390 Methyltransf_4: Putat 99.3 3.5E-11 7.6E-16 98.1 9.8 110 101-216 18-133 (195)
136 COG4122 Predicted O-methyltran 99.3 6.2E-11 1.3E-15 97.1 10.8 113 90-216 49-166 (219)
137 COG2890 HemK Methylase of poly 99.2 5E-11 1.1E-15 102.7 10.6 109 103-216 113-238 (280)
138 PHA03411 putative methyltransf 99.2 1.7E-10 3.7E-15 97.3 13.3 110 99-215 63-182 (279)
139 PRK03522 rumB 23S rRNA methylu 99.2 9.4E-11 2E-15 103.2 11.7 86 88-175 161-247 (315)
140 TIGR03704 PrmC_rel_meth putati 99.2 2.6E-10 5.6E-15 97.0 13.3 113 100-216 86-216 (251)
141 PLN02476 O-methyltransferase 99.2 1.3E-10 2.8E-15 99.0 10.0 110 93-216 111-228 (278)
142 PLN02366 spermidine synthase 99.2 2.4E-10 5.2E-15 99.5 10.6 110 99-215 90-205 (308)
143 COG2521 Predicted archaeal met 99.2 7.4E-11 1.6E-15 95.3 6.4 113 95-216 129-245 (287)
144 KOG2904 Predicted methyltransf 99.1 5.1E-10 1.1E-14 92.6 11.3 138 74-217 126-286 (328)
145 PF01596 Methyltransf_3: O-met 99.1 7.4E-11 1.6E-15 96.7 6.0 118 82-216 30-155 (205)
146 PRK11783 rlmL 23S rRNA m(2)G24 99.1 2.4E-10 5.1E-15 110.7 10.5 115 100-216 538-656 (702)
147 KOG1499 Protein arginine N-met 99.1 1.8E-10 4E-15 99.0 8.6 108 98-214 58-165 (346)
148 PRK10909 rsmD 16S rRNA m(2)G96 99.1 5.8E-10 1.3E-14 91.0 11.1 78 99-177 52-130 (199)
149 PRK15128 23S rRNA m(5)C1962 me 99.1 1.8E-10 4E-15 103.7 8.9 115 99-216 219-339 (396)
150 TIGR00417 speE spermidine synt 99.1 6E-10 1.3E-14 96.0 11.5 109 100-215 72-185 (270)
151 TIGR00479 rumA 23S rRNA (uraci 99.1 4.6E-10 1E-14 103.2 11.3 90 84-175 276-369 (431)
152 COG0220 Predicted S-adenosylme 99.1 7.4E-10 1.6E-14 91.9 11.4 110 101-216 49-164 (227)
153 PHA03412 putative methyltransf 99.1 2E-10 4.2E-15 94.8 7.8 107 100-214 49-160 (241)
154 PF05148 Methyltransf_8: Hypot 99.1 1.1E-09 2.4E-14 87.9 11.2 107 74-217 53-159 (219)
155 PRK14896 ksgA 16S ribosomal RN 99.1 7.7E-10 1.7E-14 94.6 10.9 84 89-178 18-101 (258)
156 COG2263 Predicted RNA methylas 99.1 1.4E-09 3E-14 85.7 11.1 76 97-177 42-117 (198)
157 PRK00274 ksgA 16S ribosomal RN 99.1 5.6E-10 1.2E-14 96.2 9.6 82 90-176 32-113 (272)
158 PTZ00338 dimethyladenosine tra 99.1 8E-10 1.7E-14 95.7 10.5 84 89-175 25-108 (294)
159 PLN02672 methionine S-methyltr 99.1 6.5E-10 1.4E-14 110.0 11.1 76 101-176 119-211 (1082)
160 PRK01581 speE spermidine synth 99.1 5.7E-10 1.2E-14 97.8 9.1 112 99-216 149-268 (374)
161 COG1041 Predicted DNA modifica 99.1 9.1E-10 2E-14 95.3 9.8 119 88-216 185-310 (347)
162 TIGR02085 meth_trns_rumB 23S r 99.0 1.7E-09 3.7E-14 97.3 11.5 118 83-216 216-334 (374)
163 PF05219 DREV: DREV methyltran 99.0 1.3E-09 2.9E-14 90.4 9.5 95 100-216 94-188 (265)
164 PRK03612 spermidine synthase; 99.0 6E-10 1.3E-14 104.3 8.0 112 99-216 296-415 (521)
165 KOG2899 Predicted methyltransf 99.0 1.7E-09 3.6E-14 88.1 9.4 105 99-214 57-207 (288)
166 PRK10611 chemotaxis methyltran 99.0 7.1E-10 1.5E-14 95.2 7.5 107 101-216 116-262 (287)
167 PLN02589 caffeoyl-CoA O-methyl 99.0 1.2E-09 2.5E-14 92.1 8.5 107 96-216 75-190 (247)
168 PF10294 Methyltransf_16: Puta 99.0 3.1E-09 6.8E-14 85.2 10.1 107 98-216 43-156 (173)
169 KOG1500 Protein arginine N-met 99.0 1.7E-08 3.7E-13 86.0 14.0 106 99-215 176-281 (517)
170 PF01739 CheR: CheR methyltran 99.0 1.6E-09 3.4E-14 88.2 7.6 108 100-216 31-175 (196)
171 COG3963 Phospholipid N-methylt 99.0 2.7E-08 5.8E-13 76.6 12.7 147 49-216 3-156 (194)
172 TIGR00755 ksgA dimethyladenosi 98.9 1.3E-08 2.9E-13 86.9 12.5 80 90-175 19-101 (253)
173 KOG3045 Predicted RNA methylas 98.9 9.8E-09 2.1E-13 84.4 10.9 134 37-217 132-265 (325)
174 PRK11727 23S rRNA mA1618 methy 98.9 1.1E-08 2.4E-13 89.2 11.6 81 100-180 114-201 (321)
175 PF03141 Methyltransf_29: Puta 98.9 1.4E-09 3E-14 97.8 5.7 115 85-216 98-219 (506)
176 PF01170 UPF0020: Putative RNA 98.9 7.7E-09 1.7E-13 83.4 9.3 115 89-208 17-143 (179)
177 KOG3178 Hydroxyindole-O-methyl 98.9 1.2E-08 2.5E-13 88.2 10.0 102 101-220 178-279 (342)
178 TIGR00478 tly hemolysin TlyA f 98.9 1E-08 2.3E-13 85.2 9.4 91 99-215 74-170 (228)
179 COG1352 CheR Methylase of chem 98.9 5.1E-08 1.1E-12 82.8 13.7 108 100-216 96-241 (268)
180 KOG1331 Predicted methyltransf 98.9 3.7E-09 8E-14 88.5 6.2 101 98-216 43-143 (293)
181 KOG1661 Protein-L-isoaspartate 98.9 2.5E-08 5.3E-13 79.7 10.2 102 98-216 80-193 (237)
182 PRK01544 bifunctional N5-gluta 98.9 9.6E-09 2.1E-13 95.8 9.1 112 99-216 346-462 (506)
183 PRK04148 hypothetical protein; 98.9 2.2E-08 4.9E-13 75.5 9.3 78 90-176 6-85 (134)
184 PF05185 PRMT5: PRMT5 arginine 98.9 1.7E-08 3.6E-13 92.3 10.4 103 101-213 187-294 (448)
185 TIGR00095 RNA methyltransferas 98.9 1.6E-08 3.4E-13 82.3 9.2 76 100-175 49-128 (189)
186 PRK11933 yebU rRNA (cytosine-C 98.8 5.2E-08 1.1E-12 89.5 12.6 123 97-220 110-246 (470)
187 KOG2940 Predicted methyltransf 98.8 4.5E-09 9.8E-14 84.9 4.8 102 100-215 72-173 (325)
188 PF08498 Sterol_MT_C: Sterol m 98.8 1.5E-08 3.3E-13 66.2 6.1 65 239-303 3-67 (67)
189 KOG0820 Ribosomal RNA adenine 98.8 3.5E-08 7.7E-13 81.8 9.8 83 90-175 48-130 (315)
190 KOG3420 Predicted RNA methylas 98.8 4.3E-08 9.3E-13 73.6 9.0 79 99-179 47-125 (185)
191 PF02475 Met_10: Met-10+ like- 98.8 3.2E-08 6.9E-13 80.6 8.8 99 98-212 99-198 (200)
192 COG2265 TrmA SAM-dependent met 98.8 3.5E-08 7.6E-13 89.7 9.3 139 72-212 265-414 (432)
193 PLN02823 spermine synthase 98.7 5E-08 1.1E-12 85.9 9.4 112 100-216 103-220 (336)
194 PF07942 N2227: N2227-like pro 98.7 2.7E-07 5.8E-12 78.3 13.1 102 100-213 56-199 (270)
195 PRK04338 N(2),N(2)-dimethylgua 98.7 7.1E-08 1.5E-12 86.7 10.1 104 101-220 58-162 (382)
196 PRK00050 16S rRNA m(4)C1402 me 98.7 5.5E-08 1.2E-12 83.9 8.0 82 92-176 11-98 (296)
197 PRK05031 tRNA (uracil-5-)-meth 98.7 1.3E-07 2.7E-12 84.9 10.7 76 83-161 190-265 (362)
198 TIGR02143 trmA_only tRNA (urac 98.7 1.4E-07 3.1E-12 84.2 11.0 74 85-161 183-256 (353)
199 COG0030 KsgA Dimethyladenosine 98.7 1.5E-07 3.4E-12 79.0 10.2 83 89-175 19-102 (259)
200 PF02527 GidB: rRNA small subu 98.7 5.4E-07 1.2E-11 72.6 12.7 96 103-215 51-147 (184)
201 PF09445 Methyltransf_15: RNA 98.6 7E-08 1.5E-12 75.6 6.1 73 103-176 2-77 (163)
202 PF03602 Cons_hypoth95: Conser 98.6 3.7E-08 8E-13 79.5 4.8 106 100-216 42-153 (183)
203 KOG2915 tRNA(1-methyladenosine 98.6 8.6E-07 1.9E-11 73.7 12.7 85 90-174 95-183 (314)
204 COG1092 Predicted SAM-dependen 98.6 1.5E-07 3.2E-12 84.1 8.7 113 100-216 217-336 (393)
205 KOG1663 O-methyltransferase [S 98.6 4E-07 8.7E-12 74.1 10.2 108 95-216 68-183 (237)
206 COG0144 Sun tRNA and rRNA cyto 98.6 1.2E-06 2.6E-11 78.2 13.9 127 93-220 149-292 (355)
207 PF05958 tRNA_U5-meth_tr: tRNA 98.6 3.3E-07 7.1E-12 81.9 9.6 81 79-162 176-256 (352)
208 TIGR03439 methyl_EasF probable 98.6 1E-06 2.3E-11 77.0 12.5 130 76-216 54-197 (319)
209 PF11968 DUF3321: Putative met 98.5 5.8E-07 1.3E-11 72.9 9.1 89 102-216 53-149 (219)
210 COG0421 SpeE Spermidine syntha 98.5 6.4E-07 1.4E-11 76.9 9.9 111 97-215 74-189 (282)
211 PF02384 N6_Mtase: N-6 DNA Met 98.5 9.6E-07 2.1E-11 77.8 11.1 129 88-216 34-183 (311)
212 COG2520 Predicted methyltransf 98.5 8.6E-07 1.9E-11 77.6 10.5 103 99-216 187-289 (341)
213 COG0742 N6-adenine-specific me 98.5 1E-06 2.2E-11 70.2 9.9 122 85-217 26-155 (187)
214 KOG3191 Predicted N6-DNA-methy 98.5 2.6E-06 5.6E-11 66.7 11.8 111 101-216 44-168 (209)
215 PF01234 NNMT_PNMT_TEMT: NNMT/ 98.5 6.6E-07 1.4E-11 75.5 8.9 164 99-301 55-256 (256)
216 PF13679 Methyltransf_32: Meth 98.5 2E-06 4.2E-11 66.6 10.9 82 99-181 24-112 (141)
217 PF01564 Spermine_synth: Sperm 98.5 2.9E-07 6.4E-12 77.9 6.5 110 100-216 76-191 (246)
218 PRK11783 rlmL 23S rRNA m(2)G24 98.5 3.4E-06 7.3E-11 82.1 14.5 88 90-177 179-312 (702)
219 PF04816 DUF633: Family of unk 98.5 6.4E-07 1.4E-11 73.4 8.0 116 104-220 1-126 (205)
220 PF09243 Rsm22: Mitochondrial 98.5 2E-06 4.3E-11 74.1 11.2 83 100-184 33-118 (274)
221 COG0357 GidB Predicted S-adeno 98.5 6.8E-06 1.5E-10 67.4 13.4 97 101-214 68-166 (215)
222 KOG2187 tRNA uracil-5-methyltr 98.4 3E-07 6.5E-12 83.0 5.6 81 79-161 362-442 (534)
223 PRK00536 speE spermidine synth 98.4 1.7E-06 3.7E-11 73.4 9.8 98 99-216 71-171 (262)
224 PF10672 Methyltrans_SAM: S-ad 98.4 4.9E-07 1.1E-11 77.7 6.3 113 99-216 122-238 (286)
225 PF04672 Methyltransf_19: S-ad 98.4 6.3E-07 1.4E-11 75.5 6.6 107 102-217 70-191 (267)
226 COG0500 SmtA SAM-dependent met 98.4 3.9E-06 8.5E-11 65.8 11.0 101 104-218 52-157 (257)
227 COG0116 Predicted N6-adenine-s 98.4 3.4E-06 7.4E-11 74.4 10.3 89 89-177 180-308 (381)
228 KOG2730 Methylase [General fun 98.3 1.8E-06 3.8E-11 69.7 7.0 76 100-176 94-173 (263)
229 PF00398 RrnaAD: Ribosomal RNA 98.3 5.4E-06 1.2E-10 71.1 10.0 83 89-175 19-104 (262)
230 TIGR00308 TRM1 tRNA(guanine-26 98.3 3E-06 6.5E-11 75.9 8.5 104 101-220 45-151 (374)
231 PF08123 DOT1: Histone methyla 98.3 7E-07 1.5E-11 73.2 4.1 113 92-217 34-158 (205)
232 COG4076 Predicted RNA methylas 98.2 6.1E-06 1.3E-10 65.0 8.0 101 102-215 34-134 (252)
233 COG3897 Predicted methyltransf 98.2 1.4E-05 3E-10 63.6 9.2 100 99-215 78-177 (218)
234 PF01189 Nol1_Nop2_Fmu: NOL1/N 98.2 7.6E-06 1.6E-10 70.9 7.8 125 94-219 79-222 (283)
235 PF01728 FtsJ: FtsJ-like methy 98.1 6.3E-07 1.4E-11 72.5 0.6 105 100-216 23-139 (181)
236 COG0293 FtsJ 23S rRNA methylas 98.1 1.7E-05 3.7E-10 64.3 8.8 99 98-216 43-159 (205)
237 PF01269 Fibrillarin: Fibrilla 98.1 5.3E-05 1.2E-09 61.9 11.0 105 95-216 68-178 (229)
238 COG2384 Predicted SAM-dependen 98.1 6.3E-05 1.4E-09 61.2 11.3 121 100-220 16-145 (226)
239 PF06962 rRNA_methylase: Putat 98.0 3.7E-06 8E-11 63.9 3.3 90 125-216 1-92 (140)
240 PRK11760 putative 23S rRNA C24 98.0 1.6E-05 3.6E-10 69.2 7.1 88 98-209 209-296 (357)
241 PRK10742 putative methyltransf 98.0 3.6E-05 7.7E-10 64.3 8.7 90 90-180 76-176 (250)
242 KOG2352 Predicted spermine/spe 98.0 5.7E-05 1.2E-09 68.4 10.4 113 102-217 50-162 (482)
243 TIGR01444 fkbM_fam methyltrans 98.0 2.6E-05 5.6E-10 60.4 7.3 58 103-161 1-59 (143)
244 COG4262 Predicted spermidine s 98.0 4.8E-05 1E-09 66.1 9.3 112 99-216 288-407 (508)
245 PF03059 NAS: Nicotianamine sy 98.0 7.2E-05 1.6E-09 63.8 10.4 105 101-215 121-229 (276)
246 TIGR00006 S-adenosyl-methyltra 98.0 5.8E-05 1.3E-09 65.4 9.4 83 92-176 12-100 (305)
247 TIGR02987 met_A_Alw26 type II 97.9 9.9E-05 2.1E-09 69.8 11.6 78 100-178 31-122 (524)
248 PF05971 Methyltransf_10: Prot 97.9 0.00014 3.1E-09 62.7 11.2 82 101-182 103-191 (299)
249 KOG1709 Guanidinoacetate methy 97.8 0.0001 2.3E-09 59.5 8.1 104 99-215 100-205 (271)
250 KOG1122 tRNA and rRNA cytosine 97.8 8.2E-05 1.8E-09 65.9 8.1 124 95-220 236-375 (460)
251 KOG3987 Uncharacterized conser 97.8 5E-06 1.1E-10 66.5 0.4 93 101-215 113-206 (288)
252 KOG3115 Methyltransferase-like 97.7 0.00012 2.7E-09 58.5 7.2 115 100-216 60-183 (249)
253 COG4798 Predicted methyltransf 97.7 8.8E-05 1.9E-09 58.9 5.5 120 95-219 43-169 (238)
254 COG1889 NOP1 Fibrillarin-like 97.7 0.00054 1.2E-08 54.9 9.6 105 96-216 72-180 (231)
255 PF04445 SAM_MT: Putative SAM- 97.6 0.00033 7.1E-09 58.2 8.1 90 90-180 63-163 (234)
256 PF13578 Methyltransf_24: Meth 97.5 5.3E-06 1.2E-10 60.8 -2.9 99 105-216 1-105 (106)
257 KOG4058 Uncharacterized conser 97.5 0.00055 1.2E-08 51.9 7.6 84 92-177 64-147 (199)
258 PF07091 FmrO: Ribosomal RNA m 97.4 0.00044 9.6E-09 57.7 6.8 82 98-182 103-185 (251)
259 KOG4589 Cell division protein 97.3 0.00047 1E-08 54.5 5.6 67 98-176 67-144 (232)
260 KOG3201 Uncharacterized conser 97.3 0.00014 3E-09 56.0 2.0 106 100-216 29-140 (201)
261 KOG1501 Arginine N-methyltrans 97.2 0.00081 1.8E-08 60.0 6.5 104 102-214 68-172 (636)
262 COG1189 Predicted rRNA methyla 97.2 0.0021 4.6E-08 53.1 8.5 97 99-216 78-178 (245)
263 COG1064 AdhP Zn-dependent alco 97.2 0.0034 7.3E-08 55.2 9.9 96 96-216 162-259 (339)
264 COG4627 Uncharacterized protei 97.2 5.7E-05 1.2E-09 57.7 -1.1 60 152-220 31-90 (185)
265 PF03141 Methyltransf_29: Puta 97.1 0.00058 1.3E-08 62.2 4.6 100 101-216 366-467 (506)
266 PF01795 Methyltransf_5: MraW 97.1 0.0012 2.5E-08 57.4 6.2 80 93-174 13-99 (310)
267 KOG2198 tRNA cytosine-5-methyl 97.1 0.0074 1.6E-07 53.1 10.8 125 95-220 150-300 (375)
268 PF04989 CmcI: Cephalosporin h 97.0 0.00088 1.9E-08 54.5 4.0 106 100-217 32-148 (206)
269 COG0286 HsdM Type I restrictio 97.0 0.02 4.3E-07 53.7 13.3 127 89-215 175-325 (489)
270 KOG2671 Putative RNA methylase 96.9 0.0025 5.4E-08 55.3 6.1 79 95-174 203-290 (421)
271 KOG2798 Putative trehalase [Ca 96.9 0.014 3.1E-07 50.1 10.3 37 101-138 151-187 (369)
272 COG0275 Predicted S-adenosylme 96.8 0.011 2.3E-07 50.8 9.3 81 92-174 15-102 (314)
273 COG5459 Predicted rRNA methyla 96.8 0.005 1.1E-07 53.6 7.4 108 100-217 113-226 (484)
274 KOG1596 Fibrillarin and relate 96.7 0.0067 1.5E-07 50.1 6.8 103 95-217 151-262 (317)
275 PHA01634 hypothetical protein 96.7 0.015 3.2E-07 43.2 7.8 47 100-146 28-74 (156)
276 KOG2793 Putative N2,N2-dimethy 96.6 0.043 9.3E-07 46.2 11.1 105 100-215 86-198 (248)
277 PF02005 TRM: N2,N2-dimethylgu 96.2 0.012 2.7E-07 53.0 6.4 105 100-219 49-157 (377)
278 PRK09424 pntA NAD(P) transhydr 96.1 0.053 1.1E-06 50.8 10.3 101 98-217 162-286 (509)
279 PF11599 AviRa: RRNA methyltra 96.1 0.017 3.7E-07 47.0 6.0 76 68-144 20-98 (246)
280 COG3129 Predicted SAM-dependen 96.0 0.034 7.3E-07 45.8 7.4 82 100-181 78-166 (292)
281 COG4301 Uncharacterized conser 95.9 0.19 4.1E-06 42.0 11.4 111 98-217 76-194 (321)
282 COG3510 CmcI Cephalosporin hyd 95.9 0.075 1.6E-06 42.5 8.6 106 100-222 69-186 (237)
283 KOG1253 tRNA methyltransferase 95.9 0.0094 2E-07 54.3 3.9 107 99-220 108-220 (525)
284 KOG1562 Spermidine synthase [A 95.8 0.027 5.9E-07 48.1 6.4 113 98-217 119-237 (337)
285 KOG1227 Putative methyltransfe 95.8 0.013 2.8E-07 50.0 4.5 96 100-211 194-290 (351)
286 PF02636 Methyltransf_28: Puta 95.8 0.044 9.6E-07 46.7 7.7 79 101-184 19-111 (252)
287 PF01861 DUF43: Protein of unk 95.8 0.21 4.5E-06 41.8 11.1 81 90-174 35-118 (243)
288 PRK09880 L-idonate 5-dehydroge 95.6 0.072 1.6E-06 47.5 8.9 100 96-216 165-266 (343)
289 PF03492 Methyltransf_7: SAM d 95.6 0.086 1.9E-06 46.9 9.1 84 99-183 15-122 (334)
290 PF07757 AdoMet_MTase: Predict 95.6 0.071 1.5E-06 38.5 6.8 32 100-132 58-89 (112)
291 cd08283 FDH_like_1 Glutathione 95.6 0.15 3.3E-06 46.3 10.8 108 94-216 178-306 (386)
292 PLN02668 indole-3-acetate carb 95.4 0.081 1.8E-06 47.6 8.1 83 101-183 64-177 (386)
293 PRK11524 putative methyltransf 95.3 0.044 9.5E-07 47.6 6.2 46 99-145 207-252 (284)
294 KOG2651 rRNA adenine N-6-methy 95.3 0.08 1.7E-06 46.8 7.5 58 84-141 137-194 (476)
295 COG1867 TRM1 N2,N2-dimethylgua 95.2 0.13 2.7E-06 45.6 8.4 104 101-220 53-158 (380)
296 cd08254 hydroxyacyl_CoA_DH 6-h 95.2 0.28 6.1E-06 43.3 11.0 97 95-216 160-263 (338)
297 cd00315 Cyt_C5_DNA_methylase C 95.1 0.057 1.2E-06 46.7 6.1 67 103-176 2-70 (275)
298 PF01555 N6_N4_Mtase: DNA meth 95.0 0.053 1.1E-06 45.0 5.5 42 99-141 190-231 (231)
299 PRK13699 putative methylase; P 95.0 0.076 1.7E-06 44.5 6.4 47 99-146 162-208 (227)
300 KOG0822 Protein kinase inhibit 94.9 0.18 3.9E-06 46.6 8.7 101 102-212 369-474 (649)
301 COG1565 Uncharacterized conser 94.9 0.2 4.3E-06 44.3 8.7 52 95-146 72-132 (370)
302 KOG1099 SAM-dependent methyltr 94.8 0.035 7.5E-07 45.7 3.7 98 101-215 42-162 (294)
303 KOG0024 Sorbitol dehydrogenase 94.7 0.45 9.8E-06 41.5 10.2 100 95-216 164-273 (354)
304 TIGR00561 pntA NAD(P) transhyd 94.4 0.17 3.6E-06 47.5 7.7 96 99-213 162-281 (511)
305 PF03269 DUF268: Caenorhabditi 94.1 0.031 6.7E-07 43.4 1.8 107 101-216 2-111 (177)
306 KOG2539 Mitochondrial/chloropl 93.8 0.22 4.8E-06 45.4 6.8 107 101-216 201-315 (491)
307 TIGR02822 adh_fam_2 zinc-bindi 93.7 0.74 1.6E-05 40.8 10.2 94 95-216 160-254 (329)
308 PF06859 Bin3: Bicoid-interact 93.6 0.012 2.7E-07 42.6 -1.0 39 168-215 1-43 (110)
309 cd05188 MDR Medium chain reduc 93.6 0.27 5.8E-06 41.7 7.0 96 97-216 131-232 (271)
310 KOG1098 Putative SAM-dependent 93.6 0.063 1.4E-06 50.4 3.1 36 98-133 42-79 (780)
311 TIGR00027 mthyl_TIGR00027 meth 93.5 1.4 2.9E-05 37.8 11.1 104 102-215 83-196 (260)
312 PF11899 DUF3419: Protein of u 93.4 0.49 1.1E-05 42.8 8.5 50 95-145 30-79 (380)
313 COG1063 Tdh Threonine dehydrog 92.8 1.2 2.6E-05 39.9 10.2 96 98-217 166-270 (350)
314 cd08281 liver_ADH_like1 Zinc-d 92.7 0.46 9.9E-06 42.9 7.5 101 95-216 186-290 (371)
315 cd08232 idonate-5-DH L-idonate 92.7 0.78 1.7E-05 40.6 8.9 93 100-216 165-262 (339)
316 PLN03154 putative allyl alcoho 92.3 0.71 1.5E-05 41.3 8.1 101 95-216 153-258 (348)
317 cd08230 glucose_DH Glucose deh 92.3 0.55 1.2E-05 42.0 7.4 96 98-216 170-269 (355)
318 TIGR00497 hsdM type I restrict 92.2 1.2 2.5E-05 42.1 9.7 116 100-215 217-354 (501)
319 PRK01747 mnmC bifunctional tRN 91.8 0.49 1.1E-05 46.3 6.9 105 100-213 57-203 (662)
320 TIGR03451 mycoS_dep_FDH mycoth 91.6 0.77 1.7E-05 41.2 7.6 101 95-216 171-276 (358)
321 KOG2920 Predicted methyltransf 91.5 0.16 3.5E-06 43.3 2.7 39 99-137 115-153 (282)
322 KOG2078 tRNA modification enzy 91.4 0.13 2.7E-06 46.3 2.1 63 98-161 247-310 (495)
323 PF07279 DUF1442: Protein of u 91.1 1.7 3.8E-05 35.7 8.2 84 90-174 31-121 (218)
324 TIGR02825 B4_12hDH leukotriene 91.1 1.3 2.8E-05 39.0 8.3 101 94-216 132-237 (325)
325 PF11312 DUF3115: Protein of u 90.9 1.1 2.3E-05 39.1 7.2 110 101-216 87-242 (315)
326 PF00107 ADH_zinc_N: Zinc-bind 90.8 0.56 1.2E-05 35.1 5.0 83 110-216 1-89 (130)
327 TIGR03201 dearomat_had 6-hydro 90.7 1.7 3.7E-05 38.7 8.9 46 96-141 162-208 (349)
328 cd08294 leukotriene_B4_DH_like 90.2 1 2.3E-05 39.5 7.0 97 94-215 137-240 (329)
329 cd08239 THR_DH_like L-threonin 90.2 1.3 2.9E-05 39.2 7.6 101 95-216 158-262 (339)
330 cd08245 CAD Cinnamyl alcohol d 89.9 2.2 4.7E-05 37.6 8.7 97 96-216 158-256 (330)
331 PF05050 Methyltransf_21: Meth 89.9 1.2 2.7E-05 34.7 6.5 54 106-159 1-61 (167)
332 cd08237 ribitol-5-phosphate_DH 89.5 1.8 3.9E-05 38.6 7.9 94 97-216 160-256 (341)
333 cd08234 threonine_DH_like L-th 89.5 4.3 9.4E-05 35.7 10.4 99 94-216 153-257 (334)
334 PF05711 TylF: Macrocin-O-meth 89.4 0.59 1.3E-05 39.6 4.4 103 101-216 75-212 (248)
335 cd08293 PTGR2 Prostaglandin re 89.4 1.6 3.5E-05 38.7 7.6 96 96-215 148-253 (345)
336 PLN02740 Alcohol dehydrogenase 89.1 1.5 3.3E-05 39.7 7.3 98 95-216 193-300 (381)
337 COG0604 Qor NADPH:quinone redu 89.0 1.7 3.8E-05 38.5 7.4 100 95-216 137-241 (326)
338 cd08255 2-desacetyl-2-hydroxye 88.9 4.6 9.9E-05 34.4 9.8 96 95-215 92-189 (277)
339 TIGR01202 bchC 2-desacetyl-2-h 88.7 1.8 4E-05 37.9 7.3 86 100-216 144-231 (308)
340 cd08295 double_bond_reductase_ 88.6 2.1 4.5E-05 38.0 7.7 100 95-215 146-250 (338)
341 PF05206 TRM13: Methyltransfer 88.6 2 4.3E-05 36.7 7.1 65 98-163 16-86 (259)
342 TIGR03366 HpnZ_proposed putati 88.2 4 8.6E-05 35.1 9.0 99 96-216 116-218 (280)
343 PTZ00357 methyltransferase; Pr 88.2 3 6.4E-05 40.4 8.4 100 103-211 703-830 (1072)
344 COG5379 BtaA S-adenosylmethion 88.1 1.7 3.8E-05 37.4 6.2 49 97-146 60-108 (414)
345 cd08261 Zn_ADH7 Alcohol dehydr 88.0 2.8 6.1E-05 37.0 8.1 101 94-215 153-257 (337)
346 PF00145 DNA_methylase: C-5 cy 88.0 0.77 1.7E-05 40.4 4.5 65 103-176 2-69 (335)
347 KOG2352 Predicted spermine/spe 87.5 0.66 1.4E-05 42.7 3.7 109 100-216 295-416 (482)
348 COG0686 Ald Alanine dehydrogen 87.3 2 4.4E-05 37.4 6.3 97 102-214 169-266 (371)
349 KOG0821 Predicted ribosomal RN 87.1 1.6 3.4E-05 36.0 5.3 69 91-161 41-109 (326)
350 cd05285 sorbitol_DH Sorbitol d 87.0 8.2 0.00018 34.2 10.6 101 94-216 156-265 (343)
351 COG2933 Predicted SAM-dependen 87.0 3 6.5E-05 35.4 6.9 90 96-209 207-296 (358)
352 cd00401 AdoHcyase S-adenosyl-L 86.8 2.7 5.9E-05 38.5 7.3 88 99-216 200-289 (413)
353 PF04072 LCM: Leucine carboxyl 86.4 2.3 5.1E-05 34.2 6.1 84 102-186 80-175 (183)
354 COG3315 O-Methyltransferase in 86.3 5 0.00011 35.1 8.4 105 101-215 93-208 (297)
355 cd08236 sugar_DH NAD(P)-depend 86.3 3 6.6E-05 36.9 7.4 98 95-216 154-258 (343)
356 COG4017 Uncharacterized protei 85.8 5.2 0.00011 32.3 7.4 71 96-180 40-111 (254)
357 KOG2360 Proliferation-associat 85.7 2.2 4.8E-05 38.1 5.9 68 95-163 208-277 (413)
358 PRK10309 galactitol-1-phosphat 85.4 3.2 7E-05 36.9 7.1 101 95-216 155-260 (347)
359 KOG0023 Alcohol dehydrogenase, 85.2 5.6 0.00012 34.9 7.9 96 96-216 177-279 (360)
360 PF12692 Methyltransf_17: S-ad 85.1 3.7 8.1E-05 31.6 6.1 46 86-132 15-61 (160)
361 cd08242 MDR_like Medium chain 84.5 9.7 0.00021 33.2 9.6 95 94-215 149-244 (319)
362 PLN02827 Alcohol dehydrogenase 84.0 3.8 8.2E-05 37.1 7.0 101 95-216 188-295 (378)
363 cd05278 FDH_like Formaldehyde 83.9 4.1 8.9E-05 36.0 7.1 99 96-215 163-266 (347)
364 KOG1197 Predicted quinone oxid 83.4 13 0.00027 31.7 9.0 101 94-216 140-245 (336)
365 PF03514 GRAS: GRAS domain fam 83.3 15 0.00033 33.2 10.5 118 95-219 105-246 (374)
366 cd08278 benzyl_alcohol_DH Benz 83.1 2.7 5.8E-05 37.8 5.6 98 95-216 181-285 (365)
367 cd08298 CAD2 Cinnamyl alcohol 82.8 19 0.00042 31.4 10.9 95 94-216 161-256 (329)
368 cd08238 sorbose_phosphate_red 82.6 14 0.00031 33.7 10.2 47 96-142 171-222 (410)
369 PF11899 DUF3419: Protein of u 82.0 1.4 3E-05 39.9 3.2 58 150-216 275-334 (380)
370 PLN02586 probable cinnamyl alc 81.7 7.7 0.00017 34.8 7.9 97 97-216 180-278 (360)
371 COG1568 Predicted methyltransf 81.3 5.4 0.00012 34.2 6.2 72 100-174 152-227 (354)
372 PRK11524 putative methyltransf 81.1 1.1 2.3E-05 39.0 2.1 60 151-215 8-79 (284)
373 cd08285 NADP_ADH NADP(H)-depen 80.6 7.6 0.00016 34.5 7.5 97 95-215 161-265 (351)
374 TIGR00518 alaDH alanine dehydr 80.0 3.2 7E-05 37.5 4.9 42 100-141 166-208 (370)
375 cd08296 CAD_like Cinnamyl alco 80.0 6.5 0.00014 34.7 6.8 97 96-216 159-259 (333)
376 KOG2912 Predicted DNA methylas 79.6 5.9 0.00013 34.7 5.9 74 104-177 106-187 (419)
377 cd08231 MDR_TM0436_like Hypoth 79.6 28 0.00061 31.0 10.9 94 99-216 176-280 (361)
378 PRK10458 DNA cytosine methylas 79.2 16 0.00034 34.2 9.1 59 101-162 88-146 (467)
379 KOG3924 Putative protein methy 79.1 9.7 0.00021 34.3 7.3 113 90-214 182-306 (419)
380 cd08233 butanediol_DH_like (2R 79.0 6.9 0.00015 34.8 6.7 102 94-216 166-272 (351)
381 cd08241 QOR1 Quinone oxidoredu 77.5 14 0.0003 31.8 8.2 97 95-216 134-238 (323)
382 TIGR00675 dcm DNA-methyltransf 77.1 5.6 0.00012 35.1 5.5 64 104-175 1-66 (315)
383 PRK13699 putative methylase; P 76.8 1.5 3.2E-05 36.8 1.6 61 153-215 3-71 (227)
384 PRK07063 short chain dehydroge 76.6 19 0.00041 30.3 8.5 77 100-177 6-95 (260)
385 PF02254 TrkA_N: TrkA-N domain 76.5 9.3 0.0002 27.7 5.8 59 109-175 4-69 (116)
386 PLN02514 cinnamyl-alcohol dehy 76.0 18 0.00039 32.3 8.6 96 98-216 178-275 (357)
387 KOG2782 Putative SAM dependent 75.8 2 4.3E-05 35.4 2.0 82 93-175 36-125 (303)
388 COG1086 Predicted nucleoside-d 75.6 17 0.00036 34.6 8.1 84 100-184 249-341 (588)
389 COG0270 Dcm Site-specific DNA 75.3 8.7 0.00019 34.1 6.2 70 101-176 3-75 (328)
390 PRK10083 putative oxidoreducta 75.0 17 0.00036 32.0 8.0 101 95-216 155-259 (339)
391 cd08279 Zn_ADH_class_III Class 74.6 13 0.00028 33.3 7.3 98 95-216 177-282 (363)
392 COG1255 Uncharacterized protei 74.1 12 0.00025 27.6 5.3 61 102-175 15-77 (129)
393 COG0863 DNA modification methy 74.1 17 0.00038 31.4 7.8 49 97-146 219-267 (302)
394 TIGR00692 tdh L-threonine 3-de 74.0 21 0.00046 31.5 8.5 99 97-216 158-261 (340)
395 TIGR02819 fdhA_non_GSH formald 74.0 39 0.00084 30.8 10.2 109 96-217 181-300 (393)
396 cd05281 TDH Threonine dehydrog 73.8 52 0.0011 29.0 10.9 98 97-216 160-262 (341)
397 cd05289 MDR_like_2 alcohol deh 73.5 41 0.00088 28.7 10.0 94 97-216 141-238 (309)
398 cd08274 MDR9 Medium chain dehy 73.4 34 0.00073 30.2 9.6 95 95-215 172-272 (350)
399 PRK08306 dipicolinate synthase 73.2 9 0.0002 33.5 5.7 41 100-140 151-192 (296)
400 cd08243 quinone_oxidoreductase 72.8 36 0.00078 29.3 9.5 95 96-216 138-238 (320)
401 PRK09548 PTS system ascorbate- 72.5 19 0.00042 34.5 7.9 61 98-177 503-563 (602)
402 cd05279 Zn_ADH1 Liver alcohol 72.3 15 0.00033 32.9 7.2 101 95-216 178-285 (365)
403 cd08286 FDH_like_ADH2 formalde 72.2 22 0.00048 31.4 8.1 99 95-215 161-265 (345)
404 PLN02178 cinnamyl-alcohol dehy 72.1 15 0.00033 33.2 7.1 94 99-216 177-273 (375)
405 TIGR02818 adh_III_F_hyde S-(hy 71.8 13 0.00029 33.4 6.6 101 95-216 180-287 (368)
406 cd05283 CAD1 Cinnamyl alcohol 71.8 48 0.001 29.2 10.2 97 96-216 165-263 (337)
407 PRK10310 PTS system galactitol 71.2 14 0.00031 26.1 5.3 16 103-119 4-19 (94)
408 PRK07062 short chain dehydroge 71.0 29 0.00062 29.3 8.3 77 100-177 7-96 (265)
409 cd08260 Zn_ADH6 Alcohol dehydr 70.4 20 0.00044 31.6 7.5 97 95-215 160-263 (345)
410 cd08263 Zn_ADH10 Alcohol dehyd 70.3 48 0.001 29.6 9.9 96 97-216 184-287 (367)
411 PF12242 Eno-Rase_NADH_b: NAD( 69.7 23 0.00051 23.9 5.6 44 88-131 26-72 (78)
412 PF02086 MethyltransfD12: D12 69.5 9.7 0.00021 32.2 5.0 54 90-144 10-63 (260)
413 PRK07326 short chain dehydroge 69.4 33 0.0007 28.3 8.2 74 100-177 5-91 (237)
414 PRK05854 short chain dehydroge 69.0 35 0.00076 29.9 8.6 78 100-178 13-103 (313)
415 KOG1201 Hydroxysteroid 17-beta 68.7 25 0.00055 30.6 7.1 74 100-177 37-123 (300)
416 PRK08339 short chain dehydroge 68.6 38 0.00082 28.7 8.5 76 100-177 7-94 (263)
417 PF02719 Polysacc_synt_2: Poly 68.5 11 0.00023 32.9 5.0 78 107-184 3-93 (293)
418 cd05286 QOR2 Quinone oxidoredu 68.4 60 0.0013 27.7 10.0 97 95-216 131-235 (320)
419 cd08270 MDR4 Medium chain dehy 68.1 72 0.0016 27.3 10.3 90 99-216 131-222 (305)
420 cd08240 6_hydroxyhexanoate_dh_ 68.0 23 0.00049 31.4 7.3 94 98-215 173-273 (350)
421 PRK06914 short chain dehydroge 67.9 38 0.00083 28.8 8.5 75 101-176 3-89 (280)
422 PRK05867 short chain dehydroge 67.7 37 0.0008 28.4 8.2 76 100-178 8-96 (253)
423 PRK05396 tdh L-threonine 3-deh 67.5 26 0.00056 30.9 7.5 97 99-216 162-263 (341)
424 PRK07904 short chain dehydroge 67.0 32 0.0007 29.0 7.7 76 99-176 6-95 (253)
425 COG1062 AdhC Zn-dependent alco 66.1 20 0.00043 31.9 6.1 98 95-216 180-285 (366)
426 TIGR00853 pts-lac PTS system, 65.6 29 0.00063 24.5 6.0 76 102-214 4-79 (95)
427 PRK09242 tropinone reductase; 65.3 47 0.001 27.8 8.4 78 100-178 8-98 (257)
428 cd08235 iditol_2_DH_like L-idi 65.3 72 0.0016 28.0 10.0 97 96-216 161-265 (343)
429 PRK06124 gluconate 5-dehydroge 64.9 49 0.0011 27.6 8.5 75 100-177 10-97 (256)
430 PRK07677 short chain dehydroge 64.6 47 0.001 27.7 8.2 72 102-176 2-86 (252)
431 cd05288 PGDH Prostaglandin deh 64.2 30 0.00065 30.1 7.2 96 96-215 141-243 (329)
432 PRK13771 putative alcohol dehy 63.7 42 0.00091 29.4 8.1 96 96-216 158-255 (334)
433 PRK06172 short chain dehydroge 63.7 53 0.0011 27.4 8.4 75 100-177 6-93 (253)
434 cd08266 Zn_ADH_like1 Alcohol d 63.3 17 0.00036 31.7 5.5 95 95-216 161-265 (342)
435 PLN02780 ketoreductase/ oxidor 63.1 37 0.0008 29.9 7.6 60 100-160 52-114 (320)
436 COG1748 LYS9 Saccharopine dehy 63.1 68 0.0015 29.3 9.1 70 102-176 2-76 (389)
437 PRK05876 short chain dehydroge 63.1 51 0.0011 28.2 8.3 76 100-178 5-93 (275)
438 PRK08324 short chain dehydroge 63.0 71 0.0015 31.6 10.2 74 100-177 421-507 (681)
439 PRK08251 short chain dehydroge 62.7 54 0.0012 27.2 8.3 76 102-178 3-91 (248)
440 cd08301 alcohol_DH_plants Plan 62.5 26 0.00056 31.4 6.6 101 95-216 182-289 (369)
441 KOG0022 Alcohol dehydrogenase, 62.3 24 0.00051 31.1 5.8 98 95-216 187-294 (375)
442 cd08300 alcohol_DH_class_III c 61.9 24 0.00052 31.6 6.3 101 95-216 181-288 (368)
443 PRK07890 short chain dehydroge 61.5 64 0.0014 26.9 8.6 75 100-177 4-91 (258)
444 PLN03209 translocon at the inn 60.4 33 0.0007 33.0 6.9 80 96-176 75-167 (576)
445 cd08290 ETR 2-enoyl thioester 60.1 24 0.00052 31.0 5.9 38 96-133 142-181 (341)
446 cd08291 ETR_like_1 2-enoyl thi 60.1 24 0.00053 30.8 5.9 91 101-216 143-242 (324)
447 PRK09186 flagellin modificatio 60.0 61 0.0013 26.9 8.2 76 100-176 3-91 (256)
448 PRK08213 gluconate 5-dehydroge 59.9 71 0.0015 26.7 8.6 75 100-177 11-98 (259)
449 PF03686 UPF0146: Uncharacteri 59.8 20 0.00043 26.9 4.3 64 100-176 13-78 (127)
450 PF06690 DUF1188: Protein of u 59.8 1.1E+02 0.0023 25.9 8.9 86 82-181 23-109 (252)
451 PRK07523 gluconate 5-dehydroge 59.7 68 0.0015 26.8 8.4 76 100-178 9-97 (255)
452 PRK03562 glutathione-regulated 59.7 29 0.00063 33.9 6.7 64 102-175 401-471 (621)
453 PRK07097 gluconate 5-dehydroge 59.4 67 0.0015 27.0 8.4 76 100-178 9-97 (265)
454 PRK07035 short chain dehydroge 59.2 66 0.0014 26.7 8.2 75 100-177 7-94 (252)
455 cd08297 CAD3 Cinnamyl alcohol 59.0 61 0.0013 28.5 8.3 100 96-216 161-265 (341)
456 PRK07417 arogenate dehydrogena 58.7 24 0.00052 30.4 5.5 38 103-141 2-41 (279)
457 PRK07454 short chain dehydroge 58.6 86 0.0019 25.8 8.8 76 100-178 5-93 (241)
458 PRK08217 fabG 3-ketoacyl-(acyl 58.5 72 0.0016 26.4 8.3 75 100-177 4-91 (253)
459 PRK05866 short chain dehydroge 58.4 68 0.0015 27.7 8.3 74 101-177 40-126 (293)
460 PRK12829 short chain dehydroge 58.3 74 0.0016 26.6 8.4 74 99-177 9-95 (264)
461 cd08244 MDR_enoyl_red Possible 58.2 56 0.0012 28.3 7.9 97 95-216 137-241 (324)
462 PRK09072 short chain dehydroge 58.2 68 0.0015 26.9 8.2 75 100-178 4-90 (263)
463 PF10354 DUF2431: Domain of un 58.1 40 0.00088 26.6 6.2 107 107-217 3-126 (166)
464 PTZ00354 alcohol dehydrogenase 58.1 49 0.0011 28.8 7.5 98 96-215 136-239 (334)
465 PRK08862 short chain dehydroge 58.1 70 0.0015 26.4 8.1 74 100-176 4-91 (227)
466 PLN02989 cinnamyl-alcohol dehy 58.1 44 0.00096 29.2 7.2 77 100-177 4-86 (325)
467 PRK06197 short chain dehydroge 57.8 74 0.0016 27.5 8.5 78 100-178 15-105 (306)
468 cd08277 liver_alcohol_DH_like 57.6 30 0.00066 31.0 6.2 101 95-216 179-286 (365)
469 PLN02702 L-idonate 5-dehydroge 57.6 1.4E+02 0.003 26.6 10.6 101 95-216 176-285 (364)
470 COG0569 TrkA K+ transport syst 57.5 52 0.0011 27.4 7.1 64 103-174 2-72 (225)
471 PRK12384 sorbitol-6-phosphate 57.4 72 0.0016 26.7 8.2 75 102-177 3-90 (259)
472 cd08284 FDH_like_2 Glutathione 57.3 1.2E+02 0.0026 26.6 9.9 96 96-216 163-266 (344)
473 PRK06949 short chain dehydroge 57.3 83 0.0018 26.2 8.6 76 100-178 8-96 (258)
474 PRK06125 short chain dehydroge 56.6 83 0.0018 26.3 8.5 76 100-177 6-90 (259)
475 PRK07102 short chain dehydroge 56.1 71 0.0015 26.4 7.9 73 102-176 2-84 (243)
476 PRK09496 trkA potassium transp 56.0 47 0.001 30.7 7.3 67 101-175 231-304 (453)
477 PF02737 3HCDH_N: 3-hydroxyacy 55.9 33 0.00071 27.5 5.4 41 104-145 2-44 (180)
478 PRK07478 short chain dehydroge 55.9 89 0.0019 26.0 8.5 76 100-178 5-93 (254)
479 cd08289 MDR_yhfp_like Yhfp put 55.8 44 0.00095 29.0 6.8 92 100-216 146-243 (326)
480 PRK07231 fabG 3-ketoacyl-(acyl 55.5 79 0.0017 26.1 8.1 75 100-178 4-91 (251)
481 PRK05786 fabG 3-ketoacyl-(acyl 55.4 86 0.0019 25.7 8.2 58 100-161 4-64 (238)
482 PRK10669 putative cation:proto 55.1 28 0.00062 33.4 5.8 63 102-174 418-487 (558)
483 PRK06194 hypothetical protein; 54.8 79 0.0017 26.9 8.1 75 101-178 6-93 (287)
484 PRK07814 short chain dehydroge 54.6 94 0.002 26.1 8.5 74 100-176 9-95 (263)
485 cd08292 ETR_like_2 2-enoyl thi 54.5 1.3E+02 0.0029 25.9 9.7 96 96-216 135-238 (324)
486 cd08250 Mgc45594_like Mgc45594 54.3 48 0.001 28.9 6.8 95 96-215 135-236 (329)
487 PRK08340 glucose-1-dehydrogena 53.9 73 0.0016 26.7 7.7 71 103-177 2-85 (259)
488 PRK07109 short chain dehydroge 53.8 86 0.0019 27.8 8.3 75 100-177 7-94 (334)
489 PRK07024 short chain dehydroge 53.8 63 0.0014 27.0 7.2 73 102-178 3-88 (257)
490 PF07101 DUF1363: Protein of u 53.8 5.1 0.00011 28.1 0.4 14 104-117 6-19 (124)
491 PRK06113 7-alpha-hydroxysteroi 53.7 95 0.0021 25.9 8.3 75 100-177 10-97 (255)
492 cd08268 MDR2 Medium chain dehy 53.7 1.4E+02 0.0031 25.5 10.0 97 95-216 139-243 (328)
493 cd05282 ETR_like 2-enoyl thioe 53.5 47 0.001 28.7 6.6 95 96-215 134-236 (323)
494 PRK06935 2-deoxy-D-gluconate 3 53.2 82 0.0018 26.3 7.9 74 100-177 14-100 (258)
495 PRK06139 short chain dehydroge 53.0 80 0.0017 28.0 8.0 75 100-177 6-93 (330)
496 PRK08267 short chain dehydroge 52.7 71 0.0015 26.7 7.4 72 102-178 2-87 (260)
497 COG2130 Putative NADP-dependen 52.5 1.1E+02 0.0024 26.9 8.2 99 95-215 145-248 (340)
498 PRK07666 fabG 3-ketoacyl-(acyl 52.2 1.2E+02 0.0025 25.0 8.5 74 101-177 7-93 (239)
499 COG0677 WecC UDP-N-acetyl-D-ma 52.2 19 0.00041 32.7 3.7 38 102-141 10-50 (436)
500 cd08287 FDH_like_ADH3 formalde 52.1 33 0.00071 30.2 5.4 97 95-216 163-268 (345)
No 1
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.97 E-value=1.3e-29 Score=209.41 Aligned_cols=226 Identities=28% Similarity=0.381 Sum_probs=165.6
Q ss_pred cHHHHHhhHHHHHHHHHhhhHHHHHhhcCCccccccCCCCccHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCCChHHHHH
Q 042544 39 EEEERKANYTDMVNKYYDLVTSFYEFGWGESFHFAPRWKGESLRESIKRHEHFLALQLGLKSGQKVLDVGCGIGGPLREI 118 (305)
Q Consensus 39 ~~~~~~~~~~~~~~~~yd~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l 118 (305)
..++..+..++.++..||..++..+.+ .+..| .+.+...+...+|.+|||||||||.++..+
T Consensus 8 ~k~~~v~~vF~~ia~~YD~~n~~~S~g------~~~~W------------r~~~i~~~~~~~g~~vLDva~GTGd~a~~~ 69 (238)
T COG2226 8 EKQEKVQKVFDKVAKKYDLMNDLMSFG------LHRLW------------RRALISLLGIKPGDKVLDVACGTGDMALLL 69 (238)
T ss_pred ccHHHHHHHHHhhHHHHHhhcccccCc------chHHH------------HHHHHHhhCCCCCCEEEEecCCccHHHHHH
Confidence 356778888899999999988777755 22333 344455566668999999999999999999
Q ss_pred Hhh-cCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEEecccccccCChhhhhhcCCCCCcc
Q 042544 119 AQF-SSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIEATCHAPDAAEIEIGDGLPDIR 197 (305)
Q Consensus 119 ~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~ 197 (305)
++. ..++|+|+|+|+.||+.++++....+... ++|+++|++.+||+|++||+|++++.++++++.+.
T Consensus 70 ~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~-i~fv~~dAe~LPf~D~sFD~vt~~fglrnv~d~~~----------- 137 (238)
T COG2226 70 AKSVGTGEVVGLDISESMLEVAREKLKKKGVQN-VEFVVGDAENLPFPDNSFDAVTISFGLRNVTDIDK----------- 137 (238)
T ss_pred HHhcCCceEEEEECCHHHHHHHHHHhhccCccc-eEEEEechhhCCCCCCccCEEEeeehhhcCCCHHH-----------
Confidence 954 46899999999999999999998877664 99999999999999999999999999999999987
Q ss_pred cHHHHHHHHHhCCceEEEeccCCCCCCCCCccccCCCccccccc-ccchhHHHHH---HHHHHHHHHhccCCCchHHHHH
Q 042544 198 STRKCLEALKQAGFEVIWEKDLAPDSPLPWYLPLDTSHFSLSSF-RLTSVGRFVT---RNMVKALEFVGLAPKGSQRVQD 273 (305)
Q Consensus 198 ~l~~~~~~L~~gG~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~---~~~~~~~~~~~~~~~~~~~~~~ 273 (305)
+|+|++|+|||||.+++.+..-+ ..+| ....+..++.- .++.+|.+.. .......+.....|.. +++..
T Consensus 138 aL~E~~RVlKpgG~~~vle~~~p---~~~~---~~~~~~~~~~~~v~P~~g~~~~~~~~~y~yL~eSi~~~p~~-~~l~~ 210 (238)
T COG2226 138 ALKEMYRVLKPGGRLLVLEFSKP---DNPV---LRKAYILYYFKYVLPLIGKLVAKDAEAYEYLAESIRRFPDQ-EELKQ 210 (238)
T ss_pred HHHHHHHhhcCCeEEEEEEcCCC---Cchh---hHHHHHHHHHHhHhhhhceeeecChHHHHHHHHHHHhCCCH-HHHHH
Confidence 59999999999999999874332 1111 11111111111 3455555443 2222233333445543 77888
Q ss_pred HHHHHHHHHhcCCcccccccceEEEEEcC
Q 042544 274 FLEKAAEGLAAGGRKEIFTPMYFFLARKP 302 (305)
Q Consensus 274 ~l~~~~~~~~~~~~~~~~~~~~~~~arKp 302 (305)
++.++||..+. .+.-..+...+.++.|+
T Consensus 211 ~~~~~gf~~i~-~~~~~~G~~~l~~g~K~ 238 (238)
T COG2226 211 MIEKAGFEEVR-YENLTFGIVALHRGYKP 238 (238)
T ss_pred HHHhcCceEEe-eEeeeeeeEEEEEEecC
Confidence 89998887666 22234466678888886
No 2
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.96 E-value=4e-29 Score=208.90 Aligned_cols=222 Identities=27% Similarity=0.444 Sum_probs=90.4
Q ss_pred HHHHHhhHHHHHHHHHhhhHHHHHhhcCCccccccCCCCccHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCCChHHHHHH
Q 042544 40 EEERKANYTDMVNKYYDLVTSFYEFGWGESFHFAPRWKGESLRESIKRHEHFLALQLGLKSGQKVLDVGCGIGGPLREIA 119 (305)
Q Consensus 40 ~~~~~~~~~~~~~~~yd~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~ 119 (305)
.++..+..++.++..||..+...+.+ ....|+.. +...+...++.+|||+|||||.++..++
T Consensus 5 k~~~v~~~Fd~ia~~YD~~n~~ls~g------~~~~wr~~------------~~~~~~~~~g~~vLDv~~GtG~~~~~l~ 66 (233)
T PF01209_consen 5 KEQYVRKMFDRIAPRYDRMNDLLSFG------QDRRWRRK------------LIKLLGLRPGDRVLDVACGTGDVTRELA 66 (233)
T ss_dssp --------------------------------------SH------------HHHHHT--S--EEEEET-TTSHHHHHHG
T ss_pred HHHHHHHHHHHHHHHhCCCccccCCc------HHHHHHHH------------HHhccCCCCCCEEEEeCCChHHHHHHHH
Confidence 34556677788899999888776654 34556542 2224456788999999999999999998
Q ss_pred hh--cCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEEecccccccCChhhhhhcCCCCCcc
Q 042544 120 QF--SSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIEATCHAPDAAEIEIGDGLPDIR 197 (305)
Q Consensus 120 ~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~ 197 (305)
+. +.++|+|+|+|+.|++.|++++...+.. +++++++|++++|+++++||+|++.+.++++++...
T Consensus 67 ~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~-~i~~v~~da~~lp~~d~sfD~v~~~fglrn~~d~~~----------- 134 (233)
T PF01209_consen 67 RRVGPNGKVVGVDISPGMLEVARKKLKREGLQ-NIEFVQGDAEDLPFPDNSFDAVTCSFGLRNFPDRER----------- 134 (233)
T ss_dssp GGSS---EEEEEES-HHHHHHHHHHHHHTT---SEEEEE-BTTB--S-TT-EEEEEEES-GGG-SSHHH-----------
T ss_pred HHCCCccEEEEecCCHHHHHHHHHHHHhhCCC-CeeEEEcCHHHhcCCCCceeEEEHHhhHHhhCCHHH-----------
Confidence 64 3579999999999999999999887765 899999999999999999999999999999999876
Q ss_pred cHHHHHHHHHhCCceEEEeccCCCCCCCCCccccCCCccccc-ccccchhHHHHHHHHHHHHHHhc----cCCCchHHHH
Q 042544 198 STRKCLEALKQAGFEVIWEKDLAPDSPLPWYLPLDTSHFSLS-SFRLTSVGRFVTRNMVKALEFVG----LAPKGSQRVQ 272 (305)
Q Consensus 198 ~l~~~~~~L~~gG~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~----~~~~~~~~~~ 272 (305)
.++|++|+|||||.+++.+..-+. .+ .....+.++ ...++.+|+++..+. ..+.++. -+| +.+++.
T Consensus 135 ~l~E~~RVLkPGG~l~ile~~~p~---~~----~~~~~~~~y~~~ilP~~g~l~~~~~-~~Y~yL~~Si~~f~-~~~~~~ 205 (233)
T PF01209_consen 135 ALREMYRVLKPGGRLVILEFSKPR---NP----LLRALYKFYFKYILPLIGRLLSGDR-EAYRYLPESIRRFP-SPEELK 205 (233)
T ss_dssp HHHHHHHHEEEEEEEEEEEEEB-S---SH----HHHHHHHH---------------------------------------
T ss_pred HHHHHHHHcCCCeEEEEeeccCCC---Cc----hhhceeeeeeccccccccccccccc-cccccccccccccc-cccccc
Confidence 599999999999999998754321 11 111122222 234566777665542 2344332 223 247899
Q ss_pred HHHHHHHHHHhcCCcccccccceEEEEEc
Q 042544 273 DFLEKAAEGLAAGGRKEIFTPMYFFLARK 301 (305)
Q Consensus 273 ~~l~~~~~~~~~~~~~~~~~~~~~~~arK 301 (305)
.+++++||..+.. +.-.++...+++|.|
T Consensus 206 ~~l~~~Gf~~v~~-~~~~~G~~~i~~g~K 233 (233)
T PF01209_consen 206 ELLEEAGFKNVEY-RPLTFGIVTIHVGTK 233 (233)
T ss_dssp -----------------------------
T ss_pred ccccccccccccc-cccccccccccccCC
Confidence 9999999988773 233455566777776
No 3
>PLN02244 tocopherol O-methyltransferase
Probab=99.93 E-value=8.7e-25 Score=193.68 Aligned_cols=165 Identities=26% Similarity=0.415 Sum_probs=141.5
Q ss_pred HHHhhHHHHHHHHHhhhHHHHHhhcCCccccccCC---CCccHHHHHHHHHHHHHHHcCC-----CCCCeEEEEcCCCCh
Q 042544 42 ERKANYTDMVNKYYDLVTSFYEFGWGESFHFAPRW---KGESLRESIKRHEHFLALQLGL-----KSGQKVLDVGCGIGG 113 (305)
Q Consensus 42 ~~~~~~~~~~~~~yd~~~~~y~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~-----~~~~~vLDiGcG~G~ 113 (305)
....+..+.++.+||..+++|+..||+.+|.+-.- ....+.+++.+..+.+...+.+ .++.+|||||||+|.
T Consensus 52 ~~~~~~~~~i~~~Yd~~~~~~e~~~g~~~h~g~~~~~~~~~~~~~aq~~~~~~~l~~~~~~~~~~~~~~~VLDiGCG~G~ 131 (340)
T PLN02244 52 AATADLKEGIAEFYDESSGVWEDVWGEHMHHGYYDPGASRGDHRQAQIRMIEESLAWAGVPDDDEKRPKRIVDVGCGIGG 131 (340)
T ss_pred cchhhHHHHHHHHHccchHHHHHHhCCcceeeccCCCCCcccHHHHHHHHHHHHHHhcCCCcccCCCCCeEEEecCCCCH
Confidence 34456778899999999999999999988764221 1345777777777777777777 678899999999999
Q ss_pred HHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEEecccccccCChhhhhhcCCC
Q 042544 114 PLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIEATCHAPDAAEIEIGDGL 193 (305)
Q Consensus 114 ~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~ 193 (305)
++..+++..+++|+|+|+|+.|++.++++....+..++++++++|+.++|+++++||+|++..+++|+++...
T Consensus 132 ~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~FD~V~s~~~~~h~~d~~~------- 204 (340)
T PLN02244 132 SSRYLARKYGANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPFEDGQFDLVWSMESGEHMPDKRK------- 204 (340)
T ss_pred HHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCCCCCCccEEEECCchhccCCHHH-------
Confidence 9999997557899999999999999999988877777899999999999999999999999999999998765
Q ss_pred CCcccHHHHHHHHHhCCceEEEec
Q 042544 194 PDIRSTRKCLEALKQAGFEVIWEK 217 (305)
Q Consensus 194 ~~~~~l~~~~~~L~~gG~~~i~~~ 217 (305)
+++++.++|||||.+++.+.
T Consensus 205 ----~l~e~~rvLkpGG~lvi~~~ 224 (340)
T PLN02244 205 ----FVQELARVAAPGGRIIIVTW 224 (340)
T ss_pred ----HHHHHHHHcCCCcEEEEEEe
Confidence 69999999999999999764
No 4
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.92 E-value=4.4e-24 Score=173.11 Aligned_cols=208 Identities=25% Similarity=0.366 Sum_probs=158.6
Q ss_pred HHHHHhhHHHHHHHHHhhhHHHHHhhcCCccccccCCCCccHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCCChHHHHHH
Q 042544 40 EEERKANYTDMVNKYYDLVTSFYEFGWGESFHFAPRWKGESLRESIKRHEHFLALQLGLKSGQKVLDVGCGIGGPLREIA 119 (305)
Q Consensus 40 ~~~~~~~~~~~~~~~yd~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~ 119 (305)
++....+.++.++..||..++..+.+ .++.|+ +.....+++.+++++||++||||..+..+.
T Consensus 58 ke~~V~~vF~~vA~~YD~mND~mSlG------iHRlWK------------d~~v~~L~p~~~m~~lDvaGGTGDiaFril 119 (296)
T KOG1540|consen 58 KERLVHHVFESVAKKYDIMNDAMSLG------IHRLWK------------DMFVSKLGPGKGMKVLDVAGGTGDIAFRIL 119 (296)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhhcc------hhHHHH------------HHhhhccCCCCCCeEEEecCCcchhHHHHH
Confidence 44445788899999999999888765 334453 344456788899999999999999999998
Q ss_pred hh-cC------CeEEEEcCCHHHHHHHHHHHHhcCCCCC--eEEEEcCCCCCCCCCCCeeEEEecccccccCChhhhhhc
Q 042544 120 QF-SS------TSVTGLNNNEYQITRGKELNRFAGVDKT--CNFVKADFMKMPFPDNSFDAVYAIEATCHAPDAAEIEIG 190 (305)
Q Consensus 120 ~~-~~------~~v~gvD~s~~~l~~a~~~~~~~~~~~~--~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~ 190 (305)
+. .. .+|+++|+||.||+.++++....++.+. +.++++|++++||++++||+.++.+.+..+++++.
T Consensus 120 ~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~LpFdd~s~D~yTiafGIRN~th~~k---- 195 (296)
T KOG1540|consen 120 RHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLPFDDDSFDAYTIAFGIRNVTHIQK---- 195 (296)
T ss_pred HhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCCCCCCcceeEEEecceecCCCHHH----
Confidence 54 22 7999999999999999999877777554 89999999999999999999999999999999987
Q ss_pred CCCCCcccHHHHHHHHHhCCceEEEeccCCCCCCCCCccccCCCccccccc-ccchhHHHHHHH---HHHHHHHhccCCC
Q 042544 191 DGLPDIRSTRKCLEALKQAGFEVIWEKDLAPDSPLPWYLPLDTSHFSLSSF-RLTSVGRFVTRN---MVKALEFVGLAPK 266 (305)
Q Consensus 191 ~~~~~~~~l~~~~~~L~~gG~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~---~~~~~~~~~~~~~ 266 (305)
.+++++|+|||||++.+.+..-....+..|. +..+.+ .++.+|.++... .....+++.-+|.
T Consensus 196 -------~l~EAYRVLKpGGrf~cLeFskv~~~~l~~f-------y~~ysf~VlpvlG~~iagd~~sYqYLveSI~rfp~ 261 (296)
T KOG1540|consen 196 -------ALREAYRVLKPGGRFSCLEFSKVENEPLKWF-------YDQYSFDVLPVLGEIIAGDRKSYQYLVESIRRFPP 261 (296)
T ss_pred -------HHHHHHHhcCCCcEEEEEEccccccHHHHHH-------HHhhhhhhhchhhHhhhhhHhhhhhHHhhhhcCCC
Confidence 5999999999999999887543322222221 111222 356677665432 2233344455565
Q ss_pred chHHHHHHHHHHHHHHhc
Q 042544 267 GSQRVQDFLEKAAEGLAA 284 (305)
Q Consensus 267 ~~~~~~~~l~~~~~~~~~ 284 (305)
. +++..+++++||..+.
T Consensus 262 q-e~f~~miedaGF~~~~ 278 (296)
T KOG1540|consen 262 Q-EEFASMIEDAGFSSVN 278 (296)
T ss_pred H-HHHHHHHHHcCCcccc
Confidence 4 7899999999998876
No 5
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.92 E-value=5.3e-24 Score=181.96 Aligned_cols=224 Identities=17% Similarity=0.176 Sum_probs=146.1
Q ss_pred cHHHHHhhHHHHHHHHHhhhHHHHHhhcCCccccccCCCCccHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCCChHHHHH
Q 042544 39 EEEERKANYTDMVNKYYDLVTSFYEFGWGESFHFAPRWKGESLRESIKRHEHFLALQLGLKSGQKVLDVGCGIGGPLREI 118 (305)
Q Consensus 39 ~~~~~~~~~~~~~~~~yd~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l 118 (305)
..++..+.+++.++..||..+++.+.+. .. .+...+...+.+.++.+|||+|||||.++..+
T Consensus 30 ~~~~~v~~~f~~~A~~YD~~~~~~s~g~------~~------------~~r~~~~~~~~~~~~~~VLDlGcGtG~~~~~l 91 (261)
T PLN02233 30 KCANERQALFNRIAPVYDNLNDLLSLGQ------HR------------IWKRMAVSWSGAKMGDRVLDLCCGSGDLAFLL 91 (261)
T ss_pred hhHHHHHHHHHHhhhHHHHhhhhhcCCh------hH------------HHHHHHHHHhCCCCCCEEEEECCcCCHHHHHH
Confidence 3666677777889999997665543221 01 11122334566778899999999999999998
Q ss_pred Hhh--cCCeEEEEcCCHHHHHHHHHHHHh--cCCCCCeEEEEcCCCCCCCCCCCeeEEEecccccccCChhhhhhcCCCC
Q 042544 119 AQF--SSTSVTGLNNNEYQITRGKELNRF--AGVDKTCNFVKADFMKMPFPDNSFDAVYAIEATCHAPDAAEIEIGDGLP 194 (305)
Q Consensus 119 ~~~--~~~~v~gvD~s~~~l~~a~~~~~~--~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~ 194 (305)
++. +.++|+|+|+|+.|++.|+++... .....+++++++|+.++|+++++||+|++..+++|++++..
T Consensus 92 a~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~V~~~~~l~~~~d~~~-------- 163 (261)
T PLN02233 92 SEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYFDAITMGYGLRNVVDRLK-------- 163 (261)
T ss_pred HHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCCEeEEEEecccccCCCHHH--------
Confidence 864 346999999999999999877532 12234799999999999999999999999999999998866
Q ss_pred CcccHHHHHHHHHhCCceEEEeccCCCCCCCCCccccCCCcccccccccchhHHHHHHHHHHHHHHhc---cCCCchHHH
Q 042544 195 DIRSTRKCLEALKQAGFEVIWEKDLAPDSPLPWYLPLDTSHFSLSSFRLTSVGRFVTRNMVKALEFVG---LAPKGSQRV 271 (305)
Q Consensus 195 ~~~~l~~~~~~L~~gG~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~---~~~~~~~~~ 271 (305)
+++++.++|||||.+++.+...... ++..+... .+....+.+++..+.. ...+.++. -...+.+++
T Consensus 164 ---~l~ei~rvLkpGG~l~i~d~~~~~~---~~~~~~~~---~~~~~~~~~~~~~~~~--~~~y~~l~~s~~~f~s~~el 232 (261)
T PLN02233 164 ---AMQEMYRVLKPGSRVSILDFNKSTQ---PFTTSMQE---WMIDNVVVPVATGYGL--AKEYEYLKSSINEYLTGEEL 232 (261)
T ss_pred ---HHHHHHHHcCcCcEEEEEECCCCCc---HHHHHHHH---HHHhhhhhHHHHHhCC--hHHHHHHHHHHHhcCCHHHH
Confidence 6999999999999999987432210 11001000 0000011122211100 01111110 123456889
Q ss_pred HHHHHHHHHHHhcCCcccccccceEEEEE
Q 042544 272 QDFLEKAAEGLAAGGRKEIFTPMYFFLAR 300 (305)
Q Consensus 272 ~~~l~~~~~~~~~~~~~~~~~~~~~~~ar 300 (305)
..+++++||..+..... ......+.+|+
T Consensus 233 ~~ll~~aGF~~~~~~~~-~~g~~~~~~~~ 260 (261)
T PLN02233 233 EKLALEAGFSSAKHYEI-SGGLMGNLVAT 260 (261)
T ss_pred HHHHHHCCCCEEEEEEc-CCCeeEEEEEe
Confidence 99999999987763222 22344566665
No 6
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.91 E-value=8.9e-24 Score=180.50 Aligned_cols=160 Identities=28% Similarity=0.395 Sum_probs=124.3
Q ss_pred HHHHHHHHhhhHHHHHhhcCCccccccC-CC--CccHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCCChHHHHHHhhcCC
Q 042544 48 TDMVNKYYDLVTSFYEFGWGESFHFAPR-WK--GESLRESIKRHEHFLALQLGLKSGQKVLDVGCGIGGPLREIAQFSST 124 (305)
Q Consensus 48 ~~~~~~~yd~~~~~y~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~ 124 (305)
.+.++.+||..++||...+|+.++++.- |. ...+.+++.+..+.+++.+++++|.+|||||||.|.++..+++..++
T Consensus 7 ~~~i~~hYDl~ndfy~l~Ld~~m~YS~~~~~~~~~~Le~AQ~~k~~~~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~~g~ 86 (273)
T PF02353_consen 7 RENISAHYDLGNDFYRLFLDPTMKYSCAYFDEGDDTLEEAQERKLDLLCEKLGLKPGDRVLDIGCGWGGLAIYAAERYGC 86 (273)
T ss_dssp HHHHHHHHTS-HHHHTTTS-TT---S----SSTT--HHHHHHHHHHHHHTTTT--TT-EEEEES-TTSHHHHHHHHHH--
T ss_pred HHHHHHHcCCcHHHHHHhcCCCCCCCCeecCCchhhHHHHHHHHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCc
Confidence 4679999999999999999999998743 33 45689999999999999999999999999999999999999965589
Q ss_pred eEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEEecccccccCChhhhhhcCCCCCcccHHHHHH
Q 042544 125 SVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLE 204 (305)
Q Consensus 125 ~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~ 204 (305)
+|+|+++|+.+.+.+++++...|+.+++++...|..+++. +||.|++..+++|+....... +++++.+
T Consensus 87 ~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~~---~fD~IvSi~~~Ehvg~~~~~~---------~f~~~~~ 154 (273)
T PF02353_consen 87 HVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLPG---KFDRIVSIEMFEHVGRKNYPA---------FFRKISR 154 (273)
T ss_dssp EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG------S-SEEEEESEGGGTCGGGHHH---------HHHHHHH
T ss_pred EEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccCC---CCCEEEEEechhhcChhHHHH---------HHHHHHH
Confidence 9999999999999999999999998899999999987643 899999999999997654322 6999999
Q ss_pred HHHhCCceEEEeccC
Q 042544 205 ALKQAGFEVIWEKDL 219 (305)
Q Consensus 205 ~L~~gG~~~i~~~~~ 219 (305)
+|+|||.+++.....
T Consensus 155 ~LkpgG~~~lq~i~~ 169 (273)
T PF02353_consen 155 LLKPGGRLVLQTITH 169 (273)
T ss_dssp HSETTEEEEEEEEEE
T ss_pred hcCCCcEEEEEeccc
Confidence 999999999876543
No 7
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.91 E-value=2.7e-23 Score=174.74 Aligned_cols=163 Identities=21% Similarity=0.321 Sum_probs=143.5
Q ss_pred hHHHHHHHHHhhhHHHHHhhcCCccccccCCCC-c--cHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCCChHHHHHHhhc
Q 042544 46 NYTDMVNKYYDLVTSFYEFGWGESFHFAPRWKG-E--SLRESIKRHEHFLALQLGLKSGQKVLDVGCGIGGPLREIAQFS 122 (305)
Q Consensus 46 ~~~~~~~~~yd~~~~~y~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~ 122 (305)
...+.++.+||..++||...++++..++..+.. . .+.+++....+.+++.+.+.||++|||||||.|.+++.+|+..
T Consensus 15 ~~~~~i~~HYDl~n~fy~l~Ld~~~~Yscayf~~~~~tL~eAQ~~k~~~~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y 94 (283)
T COG2230 15 RAAENIQAHYDLSNDFYRLFLDPSMTYSCAYFEDPDMTLEEAQRAKLDLILEKLGLKPGMTLLDIGCGWGGLAIYAAEEY 94 (283)
T ss_pred chhhhhhhHhhcchHHHHHhcCCCCceeeEEeCCCCCChHHHHHHHHHHHHHhcCCCCCCEEEEeCCChhHHHHHHHHHc
Confidence 456789999999999999999999888765432 2 5889999999999999999999999999999999999999655
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEEecccccccCChhhhhhcCCCCCcccHHHH
Q 042544 123 STSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKC 202 (305)
Q Consensus 123 ~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~ 202 (305)
+.+|+|+++|+++.+.+++++...|+..++++...|..++. +.||.|++..+++|+....... +++.+
T Consensus 95 ~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~---e~fDrIvSvgmfEhvg~~~~~~---------ff~~~ 162 (283)
T COG2230 95 GVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFE---EPFDRIVSVGMFEHVGKENYDD---------FFKKV 162 (283)
T ss_pred CCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccccccc---cccceeeehhhHHHhCcccHHH---------HHHHH
Confidence 89999999999999999999999999889999999998763 4499999999999998754432 69999
Q ss_pred HHHHHhCCceEEEeccCC
Q 042544 203 LEALKQAGFEVIWEKDLA 220 (305)
Q Consensus 203 ~~~L~~gG~~~i~~~~~~ 220 (305)
.++|+|||.+++.+....
T Consensus 163 ~~~L~~~G~~llh~I~~~ 180 (283)
T COG2230 163 YALLKPGGRMLLHSITGP 180 (283)
T ss_pred HhhcCCCceEEEEEecCC
Confidence 999999999999875444
No 8
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.90 E-value=8.6e-23 Score=172.21 Aligned_cols=224 Identities=21% Similarity=0.237 Sum_probs=148.9
Q ss_pred HHHHhhHHHHHHHHHhhhHHHHHhhcCCccccccCCCCccHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCCChHHHHHHh
Q 042544 41 EERKANYTDMVNKYYDLVTSFYEFGWGESFHFAPRWKGESLRESIKRHEHFLALQLGLKSGQKVLDVGCGIGGPLREIAQ 120 (305)
Q Consensus 41 ~~~~~~~~~~~~~~yd~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~ 120 (305)
.+...++++.++..||..+.+.+.. . .......++..+.+.++.+|||+|||+|.++..+++
T Consensus 4 ~~~~~~~f~~~a~~yd~~~~~~~~~------~------------~~~~~~~~l~~l~~~~~~~vLDiGcG~G~~~~~la~ 65 (231)
T TIGR02752 4 EERVHKVFEKIYKKYDRMNSVISFQ------R------------HKKWRKDTMKRMNVQAGTSALDVCCGTADWSIALAE 65 (231)
T ss_pred HHHHHHHHHHhhhHHhHHHHHhcCC------c------------hHHHHHHHHHhcCCCCCCEEEEeCCCcCHHHHHHHH
Confidence 3455666777777777765443211 0 111223344567778899999999999999999985
Q ss_pred h--cCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEEecccccccCChhhhhhcCCCCCccc
Q 042544 121 F--SSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIEATCHAPDAAEIEIGDGLPDIRS 198 (305)
Q Consensus 121 ~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~ 198 (305)
. ++.+|+|+|+|+.+++.++++....+. ++++++++|+..+++++++||+|++..+++++++... +
T Consensus 66 ~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~~~~-----------~ 133 (231)
T TIGR02752 66 AVGPEGHVIGLDFSENMLSVGRQKVKDAGL-HNVELVHGNAMELPFDDNSFDYVTIGFGLRNVPDYMQ-----------V 133 (231)
T ss_pred HhCCCCEEEEEECCHHHHHHHHHHHHhcCC-CceEEEEechhcCCCCCCCccEEEEecccccCCCHHH-----------H
Confidence 4 457999999999999999999877665 4799999999988888889999999999999988765 5
Q ss_pred HHHHHHHHHhCCceEEEeccCCCCCCCCCccccCCCcccccccccchhHHHHHHHHH--HHHHHhccCCCchHHHHHHHH
Q 042544 199 TRKCLEALKQAGFEVIWEKDLAPDSPLPWYLPLDTSHFSLSSFRLTSVGRFVTRNMV--KALEFVGLAPKGSQRVQDFLE 276 (305)
Q Consensus 199 l~~~~~~L~~gG~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~ 276 (305)
++++.++|+|||.+++.+.... ..+ .....+..+....++..+..+..... ...........+.+++..+++
T Consensus 134 l~~~~~~Lk~gG~l~~~~~~~~----~~~--~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 207 (231)
T TIGR02752 134 LREMYRVVKPGGKVVCLETSQP----TIP--GFKQLYFFYFKYIMPLFGKLFAKSYKEYSWLQESTRDFPGMDELAEMFQ 207 (231)
T ss_pred HHHHHHHcCcCeEEEEEECCCC----CCh--HHHHHHHHHHcChhHHhhHHhcCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999999999999988763221 111 00000000011112222222211000 000111112235578999999
Q ss_pred HHHHHHhcCCcccccccceEEEEEc
Q 042544 277 KAAEGLAAGGRKEIFTPMYFFLARK 301 (305)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~arK 301 (305)
++||..+.. .....++.++++|+|
T Consensus 208 ~aGf~~~~~-~~~~~g~~~~~~~~~ 231 (231)
T TIGR02752 208 EAGFKDVEV-KSYTGGVAAMHMGFK 231 (231)
T ss_pred HcCCCeeEE-EEcccceEEEEEEEC
Confidence 999988763 333446778899887
No 9
>PRK05785 hypothetical protein; Provisional
Probab=99.87 E-value=2.2e-21 Score=162.19 Aligned_cols=213 Identities=17% Similarity=0.202 Sum_probs=135.1
Q ss_pred HHHHhhHHHHHHHHHhhhHHHHHhhcCCccccccCCCCccHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCCChHHHHHHh
Q 042544 41 EERKANYTDMVNKYYDLVTSFYEFGWGESFHFAPRWKGESLRESIKRHEHFLALQLGLKSGQKVLDVGCGIGGPLREIAQ 120 (305)
Q Consensus 41 ~~~~~~~~~~~~~~yd~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~ 120 (305)
.+..++.++.+++.||..+.+.+.+ ....|+.. ....+... ..++.+|||||||||..+..+++
T Consensus 8 ~~~v~~~f~~iA~~YD~~n~~~s~g------~~~~wr~~--------~~~~l~~~--~~~~~~VLDlGcGtG~~~~~l~~ 71 (226)
T PRK05785 8 WEELQEAYNKIPKAYDRANRFISFN------QDVRWRAE--------LVKTILKY--CGRPKKVLDVAAGKGELSYHFKK 71 (226)
T ss_pred HHHHHHHHHhhhHHHHHhhhhccCC------CcHHHHHH--------HHHHHHHh--cCCCCeEEEEcCCCCHHHHHHHH
Confidence 3455566677888888766544322 11122111 11111111 13467999999999999999986
Q ss_pred hcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEEecccccccCChhhhhhcCCCCCcccHH
Q 042544 121 FSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTR 200 (305)
Q Consensus 121 ~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~ 200 (305)
..+.+|+|+|+|+.|++.|+++ ..++++|++.+|+++++||+|++..+++|++++.. .++
T Consensus 72 ~~~~~v~gvD~S~~Ml~~a~~~---------~~~~~~d~~~lp~~d~sfD~v~~~~~l~~~~d~~~-----------~l~ 131 (226)
T PRK05785 72 VFKYYVVALDYAENMLKMNLVA---------DDKVVGSFEALPFRDKSFDVVMSSFALHASDNIEK-----------VIA 131 (226)
T ss_pred hcCCEEEEECCCHHHHHHHHhc---------cceEEechhhCCCCCCCEEEEEecChhhccCCHHH-----------HHH
Confidence 5357999999999999998763 24678999999999999999999999999999876 599
Q ss_pred HHHHHHHhCCceEEEeccCCCCCCCCCccccCCCccccc-ccccchhHHHHHHHHHHHHHH----hccCCCchHHHHHHH
Q 042544 201 KCLEALKQAGFEVIWEKDLAPDSPLPWYLPLDTSHFSLS-SFRLTSVGRFVTRNMVKALEF----VGLAPKGSQRVQDFL 275 (305)
Q Consensus 201 ~~~~~L~~gG~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~----~~~~~~~~~~~~~~l 275 (305)
++.++|||. +.+.+..- ...+ ..+.++.++ ...++.+|+++..+. ..+.+ ..-+|. .+++..++
T Consensus 132 e~~RvLkp~--~~ile~~~---p~~~----~~~~~~~~y~~~~~P~~~~~~~~~~-~~Y~yl~~si~~f~~-~~~~~~~~ 200 (226)
T PRK05785 132 EFTRVSRKQ--VGFIAMGK---PDNV----IKRKYLSFYLRYIMPYIACLAGAKC-RDYKYIYYIYERLPT-NSFHREIF 200 (226)
T ss_pred HHHHHhcCc--eEEEEeCC---CCcH----HHHHHHHHHHHHHHHHHHHHhcCCh-HHHHHHHHHHHHCCC-HHHHHHHH
Confidence 999999993 22222111 0011 111112222 234455666654332 12332 233444 47888888
Q ss_pred HHHHHHHhcCCcccccccceEEEEEcC
Q 042544 276 EKAAEGLAAGGRKEIFTPMYFFLARKP 302 (305)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~arKp 302 (305)
++++ ..+. .+.-.++...+.+|+|.
T Consensus 201 ~~~~-~~~~-~~~~~~G~~~~~~~~k~ 225 (226)
T PRK05785 201 EKYA-DIKV-YEERGLGLVYFVVGSSR 225 (226)
T ss_pred HHHh-CceE-EEEccccEEEEEEEeeC
Confidence 8874 4443 22334566778999885
No 10
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.87 E-value=1e-21 Score=166.85 Aligned_cols=188 Identities=13% Similarity=0.113 Sum_probs=128.1
Q ss_pred CCCCCeEEEEcCCCChHHHHHHh---hcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEEe
Q 042544 98 LKSGQKVLDVGCGIGGPLREIAQ---FSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYA 174 (305)
Q Consensus 98 ~~~~~~vLDiGcG~G~~~~~l~~---~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~ 174 (305)
+.++.+|||||||+|..+..+++ .++.+|+|+|+|+.|++.|++++...+...+++++++|+.+++++ .+|+|++
T Consensus 54 ~~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~--~~D~vv~ 131 (247)
T PRK15451 54 VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIE--NASMVVL 131 (247)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCC--CCCEEeh
Confidence 35778999999999999988875 367899999999999999999998877766899999999987764 4899999
Q ss_pred cccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEeccCCCCCC-CCCccccCCCcccccccccchhHHHHHHH
Q 042544 175 IEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEKDLAPDSP-LPWYLPLDTSHFSLSSFRLTSVGRFVTRN 253 (305)
Q Consensus 175 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 253 (305)
..+++|+++..... ++++++++|+|||.+++.+........ .++.......+....++....+. .
T Consensus 132 ~~~l~~l~~~~~~~---------~l~~i~~~LkpGG~l~l~e~~~~~~~~~~~~~~~~~~~~~~~~g~s~~ei~-----~ 197 (247)
T PRK15451 132 NFTLQFLEPSERQA---------LLDKIYQGLNPGGALVLSEKFSFEDAKVGELLFNMHHDFKRANGYSELEIS-----Q 197 (247)
T ss_pred hhHHHhCCHHHHHH---------HHHHHHHhcCCCCEEEEEEecCCCcchhHHHHHHHHHHHHHHcCCCHHHHH-----H
Confidence 99999998655432 699999999999999998743221111 11100100000000011111111 0
Q ss_pred HHHHHHHhccCCCchHHHHHHHHHHHHHHhcCCcccccccceEEEEEcCCC
Q 042544 254 MVKALEFVGLAPKGSQRVQDFLEKAAEGLAAGGRKEIFTPMYFFLARKPQH 304 (305)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~arKp~~ 304 (305)
....++. ...|.+.++...+++++||..+.. .--+.....++|+||+.
T Consensus 198 ~~~~~~~-~~~~~~~~~~~~~L~~aGF~~v~~--~~~~~~f~~~~a~k~~~ 245 (247)
T PRK15451 198 KRSMLEN-VMLTDSVETHKARLHKAGFEHSEL--WFQCFNFGSLVALKAED 245 (247)
T ss_pred HHHHHHh-hcccCCHHHHHHHHHHcCchhHHH--HHHHHhHHHHhheeccc
Confidence 1111111 345677889999999999987662 12223344688888864
No 11
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.85 E-value=5.8e-21 Score=155.25 Aligned_cols=105 Identities=30% Similarity=0.456 Sum_probs=94.7
Q ss_pred CCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEEeccccc
Q 042544 100 SGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIEATC 179 (305)
Q Consensus 100 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~ 179 (305)
++.+|||+|||-|.++..+|+. ++.|+|+|+|+.+++.|+..+...++. +++.+..++++....++||+|+|..+++
T Consensus 59 ~g~~vLDvGCGgG~Lse~mAr~-Ga~VtgiD~se~~I~~Ak~ha~e~gv~--i~y~~~~~edl~~~~~~FDvV~cmEVlE 135 (243)
T COG2227 59 PGLRVLDVGCGGGILSEPLARL-GASVTGIDASEKPIEVAKLHALESGVN--IDYRQATVEDLASAGGQFDVVTCMEVLE 135 (243)
T ss_pred CCCeEEEecCCccHhhHHHHHC-CCeeEEecCChHHHHHHHHhhhhcccc--ccchhhhHHHHHhcCCCccEEEEhhHHH
Confidence 7899999999999999999986 899999999999999999988877664 7788888888765558999999999999
Q ss_pred ccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEecc
Q 042544 180 HAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEKD 218 (305)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~~~ 218 (305)
|+++++. +++.+.+++||||.+++++.+
T Consensus 136 Hv~dp~~-----------~~~~c~~lvkP~G~lf~STin 163 (243)
T COG2227 136 HVPDPES-----------FLRACAKLVKPGGILFLSTIN 163 (243)
T ss_pred ccCCHHH-----------HHHHHHHHcCCCcEEEEeccc
Confidence 9999988 599999999999999998743
No 12
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.84 E-value=6.9e-20 Score=164.23 Aligned_cols=156 Identities=22% Similarity=0.340 Sum_probs=131.2
Q ss_pred HHHHHHHHHhhhHHHHHhhcCCcccccc-CCC-CccHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCCChHHHHHHhhcCC
Q 042544 47 YTDMVNKYYDLVTSFYEFGWGESFHFAP-RWK-GESLRESIKRHEHFLALQLGLKSGQKVLDVGCGIGGPLREIAQFSST 124 (305)
Q Consensus 47 ~~~~~~~~yd~~~~~y~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~ 124 (305)
-.+.++.+||..++||+..++++++++. .|. ...+.+++....+.+...+.+.++.+|||||||+|.++..+++..++
T Consensus 112 ~~~~i~~hYd~~n~~y~l~ld~~m~ys~g~~~~~~~L~~Aq~~k~~~l~~~l~l~~g~rVLDIGcG~G~~a~~la~~~g~ 191 (383)
T PRK11705 112 AWIVGKEHYDLGNDLFEAMLDPRMQYSCGYWKDADTLEEAQEAKLDLICRKLQLKPGMRVLDIGCGWGGLARYAAEHYGV 191 (383)
T ss_pred HHHhhhhhcCCcHHHHHHhcCCCCcccccccCCCCCHHHHHHHHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHCCC
Confidence 3456889999999999999999887764 343 46788889888899999999999999999999999999999976678
Q ss_pred eEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEEecccccccCChhhhhhcCCCCCcccHHHHHH
Q 042544 125 SVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLE 204 (305)
Q Consensus 125 ~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~ 204 (305)
+|+|+|+|+.|++.|++++. +. .+++...|..++ +++||+|++..+++|++...... +++++.+
T Consensus 192 ~V~giDlS~~~l~~A~~~~~--~l--~v~~~~~D~~~l---~~~fD~Ivs~~~~ehvg~~~~~~---------~l~~i~r 255 (383)
T PRK11705 192 SVVGVTISAEQQKLAQERCA--GL--PVEIRLQDYRDL---NGQFDRIVSVGMFEHVGPKNYRT---------YFEVVRR 255 (383)
T ss_pred EEEEEeCCHHHHHHHHHHhc--cC--eEEEEECchhhc---CCCCCEEEEeCchhhCChHHHHH---------HHHHHHH
Confidence 99999999999999999874 22 478888888765 47899999999999997653322 6999999
Q ss_pred HHHhCCceEEEecc
Q 042544 205 ALKQAGFEVIWEKD 218 (305)
Q Consensus 205 ~L~~gG~~~i~~~~ 218 (305)
+|+|||.+++.+..
T Consensus 256 ~LkpGG~lvl~~i~ 269 (383)
T PRK11705 256 CLKPDGLFLLHTIG 269 (383)
T ss_pred HcCCCcEEEEEEcc
Confidence 99999999997654
No 13
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.83 E-value=4.5e-20 Score=160.92 Aligned_cols=107 Identities=22% Similarity=0.308 Sum_probs=95.3
Q ss_pred CCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEEecccc
Q 042544 99 KSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIEAT 178 (305)
Q Consensus 99 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l 178 (305)
.++.+|||||||+|.++..+++. +.+|+|+|+|+.|++.|+++....+...+++++++|++++++++++||+|++..++
T Consensus 130 ~~g~~ILDIGCG~G~~s~~La~~-g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~vL 208 (322)
T PLN02396 130 FEGLKFIDIGCGGGLLSEPLARM-GATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEVI 208 (322)
T ss_pred CCCCEEEEeeCCCCHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhHH
Confidence 46779999999999999999874 78999999999999999988665444457999999999888878899999999999
Q ss_pred cccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEec
Q 042544 179 CHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEK 217 (305)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~~ 217 (305)
+|++++.. +++++.++|||||.+++.+.
T Consensus 209 eHv~d~~~-----------~L~~l~r~LkPGG~liist~ 236 (322)
T PLN02396 209 EHVANPAE-----------FCKSLSALTIPNGATVLSTI 236 (322)
T ss_pred HhcCCHHH-----------HHHHHHHHcCCCcEEEEEEC
Confidence 99999876 69999999999999999863
No 14
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.82 E-value=2.6e-19 Score=153.22 Aligned_cols=115 Identities=29% Similarity=0.430 Sum_probs=97.4
Q ss_pred HHHHcCCCCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeE
Q 042544 92 LALQLGLKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDA 171 (305)
Q Consensus 92 l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~ 171 (305)
++..+.+.++.+|||||||+|..+..++...+++|+|+|+|+.|++.|+++... ..++.++++|+...|+++++||+
T Consensus 44 ~l~~l~l~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~---~~~i~~~~~D~~~~~~~~~~FD~ 120 (263)
T PTZ00098 44 ILSDIELNENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSD---KNKIEFEANDILKKDFPENTFDM 120 (263)
T ss_pred HHHhCCCCCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCc---CCceEEEECCcccCCCCCCCeEE
Confidence 445678889999999999999999999865578999999999999999987643 34799999999988888899999
Q ss_pred EEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEecc
Q 042544 172 VYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEKD 218 (305)
Q Consensus 172 v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~~~ 218 (305)
|++..+++|++..+... +++++.++|+|||.+++.+..
T Consensus 121 V~s~~~l~h~~~~d~~~---------~l~~i~r~LkPGG~lvi~d~~ 158 (263)
T PTZ00098 121 IYSRDAILHLSYADKKK---------LFEKCYKWLKPNGILLITDYC 158 (263)
T ss_pred EEEhhhHHhCCHHHHHH---------HHHHHHHHcCCCcEEEEEEec
Confidence 99999999987433222 699999999999999997743
No 15
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.82 E-value=1e-18 Score=148.08 Aligned_cols=189 Identities=28% Similarity=0.384 Sum_probs=127.5
Q ss_pred HHcCCCCCCeEEEEcCCCChHHHHHHhhc--CCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeE
Q 042544 94 LQLGLKSGQKVLDVGCGIGGPLREIAQFS--STSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDA 171 (305)
Q Consensus 94 ~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~ 171 (305)
..+...++.+|||+|||+|.++..++... ..+++++|+++.+++.+++++...+...++.++.+|+...++++++||+
T Consensus 45 ~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~ 124 (239)
T PRK00216 45 KWLGVRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFPDNSFDA 124 (239)
T ss_pred HHhCCCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCCCCCCccE
Confidence 34455577899999999999999998653 4899999999999999999877655556789999999988777789999
Q ss_pred EEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEeccCCCCCCCCCccccCCCccccc-ccccchhHHHH
Q 042544 172 VYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEKDLAPDSPLPWYLPLDTSHFSLS-SFRLTSVGRFV 250 (305)
Q Consensus 172 v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~ 250 (305)
|++..+++++++... .++++.++|+|||.+++.+....... .. .....+. .......+..+
T Consensus 125 I~~~~~l~~~~~~~~-----------~l~~~~~~L~~gG~li~~~~~~~~~~------~~-~~~~~~~~~~~~~~~~~~~ 186 (239)
T PRK00216 125 VTIAFGLRNVPDIDK-----------ALREMYRVLKPGGRLVILEFSKPTNP------PL-KKAYDFYLFKVLPLIGKLI 186 (239)
T ss_pred EEEecccccCCCHHH-----------HHHHHHHhccCCcEEEEEEecCCCch------HH-HHHHHHHHHhhhHHHHHHH
Confidence 999999999988766 59999999999999988764322110 00 0000000 00011111111
Q ss_pred HHHH--HH-HHHHhccCCCchHHHHHHHHHHHHHHhcCCcccccccceEEEEEcC
Q 042544 251 TRNM--VK-ALEFVGLAPKGSQRVQDFLEKAAEGLAAGGRKEIFTPMYFFLARKP 302 (305)
Q Consensus 251 ~~~~--~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~arKp 302 (305)
.... .. ...... ...+..++..++.++||..+.... -......+++|+||
T Consensus 187 ~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~aGf~~~~~~~-~~~~~~~~~~~~~~ 239 (239)
T PRK00216 187 SKNAEAYSYLAESIR-AFPDQEELAAMLEEAGFERVRYRN-LTGGIVALHVGYKP 239 (239)
T ss_pred cCCcHHHHHHHHHHH-hCCCHHHHHHHHHhCCCceeeeee-eecCcEEEEEEecC
Confidence 1100 00 000011 112446799999999999877432 23345578999997
No 16
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.81 E-value=4e-19 Score=151.88 Aligned_cols=114 Identities=18% Similarity=0.190 Sum_probs=98.2
Q ss_pred HHHHHcCCCCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCC-CCCCCe
Q 042544 91 FLALQLGLKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMP-FPDNSF 169 (305)
Q Consensus 91 ~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~f 169 (305)
.++..+. .++.+|||+|||+|.++..+++. +.+|+|+|+|+.|++.|+++....+...+++++++|+.+++ +++++|
T Consensus 36 ~~l~~l~-~~~~~vLDiGcG~G~~a~~la~~-g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~~f 113 (255)
T PRK11036 36 RLLAELP-PRPLRVLDAGGGEGQTAIKLAEL-GHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLETPV 113 (255)
T ss_pred HHHHhcC-CCCCEEEEeCCCchHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCCCC
Confidence 3444444 45679999999999999999976 78999999999999999999988887778999999998763 567899
Q ss_pred eEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEec
Q 042544 170 DAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEK 217 (305)
Q Consensus 170 D~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~~ 217 (305)
|+|++..+++|++++.. +++++.++|+|||.+++...
T Consensus 114 D~V~~~~vl~~~~~~~~-----------~l~~~~~~LkpgG~l~i~~~ 150 (255)
T PRK11036 114 DLILFHAVLEWVADPKS-----------VLQTLWSVLRPGGALSLMFY 150 (255)
T ss_pred CEEEehhHHHhhCCHHH-----------HHHHHHHHcCCCeEEEEEEE
Confidence 99999999999998865 59999999999999988653
No 17
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.81 E-value=3.6e-19 Score=150.79 Aligned_cols=184 Identities=14% Similarity=0.103 Sum_probs=121.3
Q ss_pred CCCCeEEEEcCCCChHHHHHHhh---cCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEEec
Q 042544 99 KSGQKVLDVGCGIGGPLREIAQF---SSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAI 175 (305)
Q Consensus 99 ~~~~~vLDiGcG~G~~~~~l~~~---~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~ 175 (305)
.++.+|||+|||+|.++..+++. ++++|+|+|+|+.|++.|++++...+...+++++++|+..++++ .+|+|++.
T Consensus 52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~--~~d~v~~~ 129 (239)
T TIGR00740 52 TPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIK--NASMVILN 129 (239)
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCC--CCCEEeee
Confidence 46789999999999999998853 57899999999999999999987766556799999999988765 48999999
Q ss_pred ccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEeccCCCCCCC-CCccccCCCcccccccccchhHHHHHHHH
Q 042544 176 EATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEKDLAPDSPL-PWYLPLDTSHFSLSSFRLTSVGRFVTRNM 254 (305)
Q Consensus 176 ~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 254 (305)
.+++|+++.+... +++++.++|+|||.+++.+......... ++.......+....++....+. ..
T Consensus 130 ~~l~~~~~~~~~~---------~l~~i~~~LkpgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-----~~ 195 (239)
T TIGR00740 130 FTLQFLPPEDRIA---------LLTKIYEGLNPNGVLVLSEKFRFEDTKINHLLIDLHHQFKRANGYSELEIS-----QK 195 (239)
T ss_pred cchhhCCHHHHHH---------HHHHHHHhcCCCeEEEEeecccCCCHhHHHHHHHHHHHHHHHcCCCHHHHH-----HH
Confidence 9999998654433 6999999999999999986432211100 0000000000000000000000 00
Q ss_pred HHHHHHhccCCCchHHHHHHHHHHHHHHhcCCcccccccceEEEEEc
Q 042544 255 VKALEFVGLAPKGSQRVQDFLEKAAEGLAAGGRKEIFTPMYFFLARK 301 (305)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~arK 301 (305)
...+ .-...|.+.+++..+++++||..+.. .........++|||
T Consensus 196 ~~~~-~~~~~~~s~~~~~~~l~~aGF~~~~~--~~~~~~~~~~~~~~ 239 (239)
T TIGR00740 196 RTAL-ENVMRTDSIETHKARLKNVGFSHVEL--WFQCFNFGSLVAVK 239 (239)
T ss_pred HHHH-hccCCCCCHHHHHHHHHHcCCchHHH--HHHHHhHhHHheeC
Confidence 0011 11346778899999999999986652 12223334566664
No 18
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.81 E-value=4.2e-19 Score=132.43 Aligned_cols=107 Identities=25% Similarity=0.344 Sum_probs=89.1
Q ss_pred CCCeEEEEcCCCChHHHHHHh-hcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCC-CCCCCCCCCeeEEEecc-
Q 042544 100 SGQKVLDVGCGIGGPLREIAQ-FSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADF-MKMPFPDNSFDAVYAIE- 176 (305)
Q Consensus 100 ~~~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~-~~~~~~~~~fD~v~~~~- 176 (305)
|+.+|||||||+|.++..+++ .++.+|+|+|+|+.|++.|++++...+..++++++++|+ ..... .+.||+|++..
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~~D~v~~~~~ 79 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDF-LEPFDLVICSGF 79 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTT-SSCEEEEEECSG
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCccc-CCCCCEEEECCC
Confidence 578999999999999999996 579999999999999999999997777778999999999 44444 35699999999
Q ss_pred cccccCCh-hhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 177 ATCHAPDA-AEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 177 ~l~~~~~~-~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
.++++... +.. .+++++.+.|+|||++++.+
T Consensus 80 ~~~~~~~~~~~~---------~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 80 TLHFLLPLDERR---------RVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp SGGGCCHHHHHH---------HHHHHHHHHEEEEEEEEEEE
T ss_pred ccccccchhHHH---------HHHHHHHHhcCCCcEEEEEE
Confidence 55544432 221 26999999999999999975
No 19
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.80 E-value=1.1e-19 Score=131.30 Aligned_cols=95 Identities=33% Similarity=0.535 Sum_probs=82.1
Q ss_pred EEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEEecccccccCCh
Q 042544 105 LDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIEATCHAPDA 184 (305)
Q Consensus 105 LDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~ 184 (305)
||+|||+|..+..+++.++.+|+++|+|+.+++.++++... .++.++++|+.++|+++++||+|++..+++|+++.
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~~~----~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~~~~ 76 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRLKN----EGVSFRQGDAEDLPFPDNSFDVVFSNSVLHHLEDP 76 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHTTT----STEEEEESBTTSSSS-TT-EEEEEEESHGGGSSHH
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhcccc----cCchheeehHHhCccccccccccccccceeeccCH
Confidence 89999999999999976789999999999999999997653 34669999999999999999999999999999666
Q ss_pred hhhhhcCCCCCcccHHHHHHHHHhCCceEE
Q 042544 185 AEIEIGDGLPDIRSTRKCLEALKQAGFEVI 214 (305)
Q Consensus 185 ~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i 214 (305)
.. +++++.|+|||||+++|
T Consensus 77 ~~-----------~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 77 EA-----------ALREIYRVLKPGGRLVI 95 (95)
T ss_dssp HH-----------HHHHHHHHEEEEEEEEE
T ss_pred HH-----------HHHHHHHHcCcCeEEeC
Confidence 55 69999999999999875
No 20
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.80 E-value=1.1e-18 Score=152.68 Aligned_cols=162 Identities=22% Similarity=0.276 Sum_probs=119.3
Q ss_pred CCCCeEEEEcCCCChHHHHHHhh-cCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEEeccc
Q 042544 99 KSGQKVLDVGCGIGGPLREIAQF-SSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIEA 177 (305)
Q Consensus 99 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~ 177 (305)
.++.+|||||||+|.++..+++. ++.+|+++|+|+.|++.|+++... .+++++.+|+.++++++++||+|++..+
T Consensus 112 ~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~----~~i~~i~gD~e~lp~~~~sFDvVIs~~~ 187 (340)
T PLN02490 112 DRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL----KECKIIEGDAEDLPFPTDYADRYVSAGS 187 (340)
T ss_pred CCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhc----cCCeEEeccHHhCCCCCCceeEEEEcCh
Confidence 46789999999999999988853 467999999999999999887532 3688999999999988899999999999
Q ss_pred ccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEeccCCCCCCCCCccccCCCcccccccccchhHHHHHHHHHHH
Q 042544 178 TCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEKDLAPDSPLPWYLPLDTSHFSLSSFRLTSVGRFVTRNMVKA 257 (305)
Q Consensus 178 l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 257 (305)
++|++++.. .++++.++|+|||.+++.+.... ..| ..+.+.
T Consensus 188 L~~~~d~~~-----------~L~e~~rvLkPGG~LvIi~~~~p----~~~------------------~~r~~~------ 228 (340)
T PLN02490 188 IEYWPDPQR-----------GIKEAYRVLKIGGKACLIGPVHP----TFW------------------LSRFFA------ 228 (340)
T ss_pred hhhCCCHHH-----------HHHHHHHhcCCCcEEEEEEecCc----chh------------------HHHHhh------
Confidence 999998866 59999999999999988642111 001 000000
Q ss_pred HHHhccCCCchHHHHHHHHHHHHHHhcCCccc----------ccccceEEEEEcCCCC
Q 042544 258 LEFVGLAPKGSQRVQDFLEKAAEGLAAGGRKE----------IFTPMYFFLARKPQHG 305 (305)
Q Consensus 258 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~----------~~~~~~~~~arKp~~~ 305 (305)
+.+.. ..+.+++..+++++||..+...... .+...+.+.++||.+|
T Consensus 229 -~~~~~-~~t~eEl~~lL~~aGF~~V~i~~i~~~~~~~~~~~~~~~~~~v~~~k~~~~ 284 (340)
T PLN02490 229 -DVWML-FPKEEEYIEWFTKAGFKDVKLKRIGPKWYRGVRRHGLIMGCSVTGVKPASG 284 (340)
T ss_pred -hhhcc-CCCHHHHHHHHHHCCCeEEEEEEcChhhccccccccceeeEEEEEeccccC
Confidence 00111 1345789999999999765533322 2223356899999754
No 21
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.79 E-value=2.6e-18 Score=159.73 Aligned_cols=116 Identities=34% Similarity=0.446 Sum_probs=100.1
Q ss_pred HHHHHHcCCCCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCe
Q 042544 90 HFLALQLGLKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSF 169 (305)
Q Consensus 90 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~f 169 (305)
+.+.+.+.+.++.+|||||||+|..+..++...+++|+|+|+|+.+++.|+++.. +...+++++++|+...++++++|
T Consensus 256 e~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~~--~~~~~v~~~~~d~~~~~~~~~~f 333 (475)
T PLN02336 256 KEFVDKLDLKPGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERAI--GRKCSVEFEVADCTKKTYPDNSF 333 (475)
T ss_pred HHHHHhcCCCCCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHhh--cCCCceEEEEcCcccCCCCCCCE
Confidence 3344556677888999999999999999986558899999999999999988764 33457999999999888888899
Q ss_pred eEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEecc
Q 042544 170 DAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEKD 218 (305)
Q Consensus 170 D~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~~~ 218 (305)
|+|++..+++|++++.. ++++++++|+|||.+++.+..
T Consensus 334 D~I~s~~~l~h~~d~~~-----------~l~~~~r~LkpgG~l~i~~~~ 371 (475)
T PLN02336 334 DVIYSRDTILHIQDKPA-----------LFRSFFKWLKPGGKVLISDYC 371 (475)
T ss_pred EEEEECCcccccCCHHH-----------HHHHHHHHcCCCeEEEEEEec
Confidence 99999999999999876 599999999999999998754
No 22
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.79 E-value=3.6e-18 Score=145.78 Aligned_cols=113 Identities=18% Similarity=0.267 Sum_probs=95.4
Q ss_pred HHHHHHHHHcCCCCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCC
Q 042544 87 RHEHFLALQLGLKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPD 166 (305)
Q Consensus 87 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~ 166 (305)
...+.+...+...++.+|||+|||+|.++..++.. +.+|+++|+|+.|++.++++.. ...++++|++.+|+++
T Consensus 29 ~~a~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~v~~~D~s~~~l~~a~~~~~------~~~~~~~d~~~~~~~~ 101 (251)
T PRK10258 29 QSADALLAMLPQRKFTHVLDAGCGPGWMSRYWRER-GSQVTALDLSPPMLAQARQKDA------ADHYLAGDIESLPLAT 101 (251)
T ss_pred HHHHHHHHhcCccCCCeEEEeeCCCCHHHHHHHHc-CCeEEEEECCHHHHHHHHhhCC------CCCEEEcCcccCcCCC
Confidence 33445555566556789999999999999988864 7899999999999999987632 3578999999999988
Q ss_pred CCeeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEec
Q 042544 167 NSFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEK 217 (305)
Q Consensus 167 ~~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~~ 217 (305)
++||+|++..++++.+++.. ++.++.++|+|||.+++...
T Consensus 102 ~~fD~V~s~~~l~~~~d~~~-----------~l~~~~~~Lk~gG~l~~~~~ 141 (251)
T PRK10258 102 ATFDLAWSNLAVQWCGNLST-----------ALRELYRVVRPGGVVAFTTL 141 (251)
T ss_pred CcEEEEEECchhhhcCCHHH-----------HHHHHHHHcCCCeEEEEEeC
Confidence 99999999999999988866 59999999999999998763
No 23
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.78 E-value=6.8e-18 Score=141.44 Aligned_cols=140 Identities=31% Similarity=0.429 Sum_probs=107.9
Q ss_pred hHHHHHHHHHhhhHHHHHhhcCCccccccCCCCccHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCCChHHHHHHhhcC--
Q 042544 46 NYTDMVNKYYDLVTSFYEFGWGESFHFAPRWKGESLRESIKRHEHFLALQLGLKSGQKVLDVGCGIGGPLREIAQFSS-- 123 (305)
Q Consensus 46 ~~~~~~~~~yd~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~-- 123 (305)
..++.++..||..+..+.... .......+...+...++.+|||+|||+|.++..+++...
T Consensus 3 ~~~~~~~~~y~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~ 64 (223)
T TIGR01934 3 EMFDRIAPKYDLLNDLLSFGL------------------HRLWRRRAVKLIGVFKGQKVLDVACGTGDLAIELAKSAPDR 64 (223)
T ss_pred hHHHHHHhhhhHHHHHHhccc------------------HHHHHHHHHHHhccCCCCeEEEeCCCCChhHHHHHHhcCCC
Confidence 456777788887654433110 111223334444555788999999999999999985433
Q ss_pred CeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEEecccccccCChhhhhhcCCCCCcccHHHHH
Q 042544 124 TSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCL 203 (305)
Q Consensus 124 ~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~ 203 (305)
.+++++|+++.+++.++++.. ...+++++.+|+.+.++++++||+|++..++++.++... +++++.
T Consensus 65 ~~~~~iD~~~~~~~~~~~~~~---~~~~i~~~~~d~~~~~~~~~~~D~i~~~~~~~~~~~~~~-----------~l~~~~ 130 (223)
T TIGR01934 65 GKVTGVDFSSEMLEVAKKKSE---LPLNIEFIQADAEALPFEDNSFDAVTIAFGLRNVTDIQK-----------ALREMY 130 (223)
T ss_pred ceEEEEECCHHHHHHHHHHhc---cCCCceEEecchhcCCCCCCcEEEEEEeeeeCCcccHHH-----------HHHHHH
Confidence 599999999999999988765 234689999999988877789999999999999988765 599999
Q ss_pred HHHHhCCceEEEec
Q 042544 204 EALKQAGFEVIWEK 217 (305)
Q Consensus 204 ~~L~~gG~~~i~~~ 217 (305)
+.|+|||.+++.+.
T Consensus 131 ~~L~~gG~l~~~~~ 144 (223)
T TIGR01934 131 RVLKPGGRLVILEF 144 (223)
T ss_pred HHcCCCcEEEEEEe
Confidence 99999999998764
No 24
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.78 E-value=2.4e-18 Score=135.52 Aligned_cols=106 Identities=27% Similarity=0.510 Sum_probs=94.5
Q ss_pred CCCCeEEEEcCCCChHHHHHH-h-hcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCC--CCCCCeeEEEe
Q 042544 99 KSGQKVLDVGCGIGGPLREIA-Q-FSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMP--FPDNSFDAVYA 174 (305)
Q Consensus 99 ~~~~~vLDiGcG~G~~~~~l~-~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~fD~v~~ 174 (305)
+++.+|||+|||+|.++..++ + .++.+++|+|+|+.|++.|++++...+.. +++|+++|+.+++ ++ +.||+|++
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~-ni~~~~~d~~~l~~~~~-~~~D~I~~ 79 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLD-NIEFIQGDIEDLPQELE-EKFDIIIS 79 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTST-TEEEEESBTTCGCGCSS-TTEEEEEE
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhccccccccc-ccceEEeehhccccccC-CCeeEEEE
Confidence 367899999999999999999 4 35789999999999999999999888876 8999999999977 55 78999999
Q ss_pred cccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEec
Q 042544 175 IEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEK 217 (305)
Q Consensus 175 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~~ 217 (305)
..+++|++++.. .++++.+.|+++|.+++.+.
T Consensus 80 ~~~l~~~~~~~~-----------~l~~~~~~lk~~G~~i~~~~ 111 (152)
T PF13847_consen 80 NGVLHHFPDPEK-----------VLKNIIRLLKPGGILIISDP 111 (152)
T ss_dssp ESTGGGTSHHHH-----------HHHHHHHHEEEEEEEEEEEE
T ss_pred cCchhhccCHHH-----------HHHHHHHHcCCCcEEEEEEC
Confidence 999999998876 59999999999999998764
No 25
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.77 E-value=7.9e-18 Score=138.10 Aligned_cols=110 Identities=17% Similarity=0.239 Sum_probs=92.4
Q ss_pred HcCCCCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEEe
Q 042544 95 QLGLKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYA 174 (305)
Q Consensus 95 ~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~ 174 (305)
.+...++.+|||+|||+|..+..+++. +.+|+|+|+|+.|++.+++++...++. ++++.+.|+..++++ ++||+|++
T Consensus 25 ~l~~~~~~~vLDiGcG~G~~a~~La~~-g~~V~gvD~S~~~i~~a~~~~~~~~~~-~v~~~~~d~~~~~~~-~~fD~I~~ 101 (197)
T PRK11207 25 AVKVVKPGKTLDLGCGNGRNSLYLAAN-GFDVTAWDKNPMSIANLERIKAAENLD-NLHTAVVDLNNLTFD-GEYDFILS 101 (197)
T ss_pred hcccCCCCcEEEECCCCCHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHHcCCC-cceEEecChhhCCcC-CCcCEEEE
Confidence 445556789999999999999999976 789999999999999999988877663 588999999887764 67999999
Q ss_pred cccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 175 IEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 175 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
..+++|++...... +++++.++|+|||.+++.+
T Consensus 102 ~~~~~~~~~~~~~~---------~l~~i~~~LkpgG~~~~~~ 134 (197)
T PRK11207 102 TVVLMFLEAKTIPG---------LIANMQRCTKPGGYNLIVA 134 (197)
T ss_pred ecchhhCCHHHHHH---------HHHHHHHHcCCCcEEEEEE
Confidence 99999887544322 6999999999999966544
No 26
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.77 E-value=1.5e-17 Score=146.13 Aligned_cols=113 Identities=19% Similarity=0.346 Sum_probs=92.8
Q ss_pred HHHcCCCCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEE
Q 042544 93 ALQLGLKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAV 172 (305)
Q Consensus 93 ~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v 172 (305)
...++..++.+|||||||+|.++..++......|+|+|+|+.++..++......+...++.++.+|++++|+ +++||+|
T Consensus 115 ~~~l~~l~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~-~~~FD~V 193 (322)
T PRK15068 115 LPHLSPLKGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPA-LKAFDTV 193 (322)
T ss_pred HHhhCCCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCC-cCCcCEE
Confidence 334444467899999999999999999754457999999999997665543333334579999999999888 7889999
Q ss_pred EecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEec
Q 042544 173 YAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEK 217 (305)
Q Consensus 173 ~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~~ 217 (305)
+|..+++|..++.. .++++++.|+|||.+++.+.
T Consensus 194 ~s~~vl~H~~dp~~-----------~L~~l~~~LkpGG~lvl~~~ 227 (322)
T PRK15068 194 FSMGVLYHRRSPLD-----------HLKQLKDQLVPGGELVLETL 227 (322)
T ss_pred EECChhhccCCHHH-----------HHHHHHHhcCCCcEEEEEEE
Confidence 99999999998866 59999999999999998753
No 27
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=99.77 E-value=1.9e-17 Score=130.55 Aligned_cols=107 Identities=25% Similarity=0.320 Sum_probs=93.9
Q ss_pred CCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeE-EEEcCCCCCC-CCCCCeeEEEeccc
Q 042544 100 SGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCN-FVKADFMKMP-FPDNSFDAVYAIEA 177 (305)
Q Consensus 100 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~-~~~~d~~~~~-~~~~~fD~v~~~~~ 177 (305)
....|||+|||||..-..+-..++.+|+++|+++.|-+.+.+.++... ..++. |++++.+++| ++++++|.|++..+
T Consensus 76 ~K~~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k-~~~~~~fvva~ge~l~~l~d~s~DtVV~Tlv 154 (252)
T KOG4300|consen 76 GKGDVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKK-PLQVERFVVADGENLPQLADGSYDTVVCTLV 154 (252)
T ss_pred CccceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhcc-CcceEEEEeechhcCcccccCCeeeEEEEEE
Confidence 334689999999999888875678999999999999999999887763 34566 9999999988 88999999999999
Q ss_pred ccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEecc
Q 042544 178 TCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEKD 218 (305)
Q Consensus 178 l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~~~ 218 (305)
++...++.. .++++.++|+|||.+++.++.
T Consensus 155 LCSve~~~k-----------~L~e~~rlLRpgG~iifiEHv 184 (252)
T KOG4300|consen 155 LCSVEDPVK-----------QLNEVRRLLRPGGRIIFIEHV 184 (252)
T ss_pred EeccCCHHH-----------HHHHHHHhcCCCcEEEEEecc
Confidence 999999976 599999999999999998753
No 28
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=99.76 E-value=1.1e-18 Score=142.82 Aligned_cols=102 Identities=27% Similarity=0.354 Sum_probs=87.1
Q ss_pred CCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCC-----CeEEEEcCCCCCCCCCCCeeEEEec
Q 042544 101 GQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDK-----TCNFVKADFMKMPFPDNSFDAVYAI 175 (305)
Q Consensus 101 ~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~-----~~~~~~~d~~~~~~~~~~fD~v~~~ 175 (305)
|++|||+|||+|.++..|++. ++.|+|+|+++.|++.|++......... ++++.+.|++... +.||+|+|.
T Consensus 90 g~~ilDvGCGgGLLSepLArl-ga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~---~~fDaVvcs 165 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARL-GAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLT---GKFDAVVCS 165 (282)
T ss_pred CceEEEeccCccccchhhHhh-CCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcc---cccceeeeH
Confidence 578999999999999999987 8999999999999999999844332222 3677788887753 459999999
Q ss_pred ccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEec
Q 042544 176 EATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEK 217 (305)
Q Consensus 176 ~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~~ 217 (305)
.+++|+.++.. +++.+.+.|+|||.+++.+.
T Consensus 166 evleHV~dp~~-----------~l~~l~~~lkP~G~lfitti 196 (282)
T KOG1270|consen 166 EVLEHVKDPQE-----------FLNCLSALLKPNGRLFITTI 196 (282)
T ss_pred HHHHHHhCHHH-----------HHHHHHHHhCCCCceEeeeh
Confidence 99999999987 59999999999999999863
No 29
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.76 E-value=6.6e-18 Score=144.40 Aligned_cols=105 Identities=19% Similarity=0.324 Sum_probs=90.2
Q ss_pred HHHHcCCCCCCeEEEEcCCCChHHHHHHhh-cCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCee
Q 042544 92 LALQLGLKSGQKVLDVGCGIGGPLREIAQF-SSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFD 170 (305)
Q Consensus 92 l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD 170 (305)
++..+...++.+|||||||+|.++..+++. ++.+|+|+|+|+.|++.|+++ +++++++|+.+++ ++++||
T Consensus 21 ll~~l~~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~~~-~~~~fD 91 (255)
T PRK14103 21 LLARVGAERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER--------GVDARTGDVRDWK-PKPDTD 91 (255)
T ss_pred HHHhCCCCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc--------CCcEEEcChhhCC-CCCCce
Confidence 344566678899999999999999999854 578999999999999998762 4789999998774 567899
Q ss_pred EEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 171 AVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 171 ~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
+|++..+++|++++.. .++++.++|+|||.+++..
T Consensus 92 ~v~~~~~l~~~~d~~~-----------~l~~~~~~LkpgG~l~~~~ 126 (255)
T PRK14103 92 VVVSNAALQWVPEHAD-----------LLVRWVDELAPGSWIAVQV 126 (255)
T ss_pred EEEEehhhhhCCCHHH-----------HHHHHHHhCCCCcEEEEEc
Confidence 9999999999998765 5999999999999998864
No 30
>PRK08317 hypothetical protein; Provisional
Probab=99.75 E-value=5.6e-17 Score=137.34 Aligned_cols=118 Identities=31% Similarity=0.465 Sum_probs=100.5
Q ss_pred HHHHHHHHcCCCCCCeEEEEcCCCChHHHHHHhh--cCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCC
Q 042544 88 HEHFLALQLGLKSGQKVLDVGCGIGGPLREIAQF--SSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFP 165 (305)
Q Consensus 88 ~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~ 165 (305)
+.+.+...+.+.++.+|||+|||+|.++..++.. +.++++|+|+|+.+++.++++... ...++.++.+|+...+++
T Consensus 7 ~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~--~~~~~~~~~~d~~~~~~~ 84 (241)
T PRK08317 7 YRARTFELLAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAG--LGPNVEFVRGDADGLPFP 84 (241)
T ss_pred HHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhC--CCCceEEEecccccCCCC
Confidence 3345556778888999999999999999999854 457999999999999999887332 235789999999888888
Q ss_pred CCCeeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEecc
Q 042544 166 DNSFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEKD 218 (305)
Q Consensus 166 ~~~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~~~ 218 (305)
+++||+|++..+++|++++.. +++++.++|+|||.+++.+.+
T Consensus 85 ~~~~D~v~~~~~~~~~~~~~~-----------~l~~~~~~L~~gG~l~~~~~~ 126 (241)
T PRK08317 85 DGSFDAVRSDRVLQHLEDPAR-----------ALAEIARVLRPGGRVVVLDTD 126 (241)
T ss_pred CCCceEEEEechhhccCCHHH-----------HHHHHHHHhcCCcEEEEEecC
Confidence 889999999999999999866 599999999999999998754
No 31
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.75 E-value=1.3e-17 Score=144.11 Aligned_cols=111 Identities=24% Similarity=0.309 Sum_probs=96.6
Q ss_pred cCCCCCCeEEEEcCCCChHHHHHHhh--cCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEE
Q 042544 96 LGLKSGQKVLDVGCGIGGPLREIAQF--SSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVY 173 (305)
Q Consensus 96 ~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~ 173 (305)
..+.++.+|||+|||+|..+..++.. +..+|+|+|+|+.|++.|+++....+.. +++++++|++.+++++++||+|+
T Consensus 73 ~~~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~-~v~~~~~d~~~l~~~~~~fD~Vi 151 (272)
T PRK11873 73 AELKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYT-NVEFRLGEIEALPVADNSVDVII 151 (272)
T ss_pred ccCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCC-CEEEEEcchhhCCCCCCceeEEE
Confidence 45678999999999999988877753 3458999999999999999998877764 78999999999988888999999
Q ss_pred ecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEecc
Q 042544 174 AIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEKD 218 (305)
Q Consensus 174 ~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~~~ 218 (305)
+..+++|.++... +++++.++|+|||.+++.+..
T Consensus 152 ~~~v~~~~~d~~~-----------~l~~~~r~LkpGG~l~i~~~~ 185 (272)
T PRK11873 152 SNCVINLSPDKER-----------VFKEAFRVLKPGGRFAISDVV 185 (272)
T ss_pred EcCcccCCCCHHH-----------HHHHHHHHcCCCcEEEEEEee
Confidence 9999999988765 599999999999999997643
No 32
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.75 E-value=1.6e-17 Score=144.38 Aligned_cols=114 Identities=18% Similarity=0.260 Sum_probs=91.4
Q ss_pred HHHcCCCCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEE
Q 042544 93 ALQLGLKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAV 172 (305)
Q Consensus 93 ~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v 172 (305)
...+...++.+|||||||+|.++..++......|+|+|+|+.|+..++......+...++.+...++.+++.. ++||+|
T Consensus 114 l~~l~~~~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~~-~~FD~V 192 (314)
T TIGR00452 114 LPHLSPLKGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHEL-YAFDTV 192 (314)
T ss_pred HHhcCCCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCCC-CCcCEE
Confidence 3345556788999999999999998886534579999999999987644333222235688899999888764 589999
Q ss_pred EecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEecc
Q 042544 173 YAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEKD 218 (305)
Q Consensus 173 ~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~~~ 218 (305)
+|.++++|.+++.. .+++++++|+|||.+++.+..
T Consensus 193 ~s~gvL~H~~dp~~-----------~L~el~r~LkpGG~Lvletl~ 227 (314)
T TIGR00452 193 FSMGVLYHRKSPLE-----------HLKQLKHQLVIKGELVLETLV 227 (314)
T ss_pred EEcchhhccCCHHH-----------HHHHHHHhcCCCCEEEEEEEE
Confidence 99999999999866 599999999999999997643
No 33
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.75 E-value=2.1e-17 Score=135.39 Aligned_cols=109 Identities=14% Similarity=0.171 Sum_probs=89.6
Q ss_pred HcCCCCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEEe
Q 042544 95 QLGLKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYA 174 (305)
Q Consensus 95 ~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~ 174 (305)
.+...++.+|||+|||+|.++..+++. +.+|+|+|+|+.|++.+++++...++. +.+.+.|+...+++ ++||+|++
T Consensus 25 ~~~~~~~~~vLDiGcG~G~~a~~la~~-g~~V~~iD~s~~~l~~a~~~~~~~~~~--v~~~~~d~~~~~~~-~~fD~I~~ 100 (195)
T TIGR00477 25 AVKTVAPCKTLDLGCGQGRNSLYLSLA-GYDVRAWDHNPASIASVLDMKARENLP--LRTDAYDINAAALN-EDYDFIFS 100 (195)
T ss_pred HhccCCCCcEEEeCCCCCHHHHHHHHC-CCeEEEEECCHHHHHHHHHHHHHhCCC--ceeEeccchhcccc-CCCCEEEE
Confidence 344445679999999999999999975 789999999999999999988776653 77888888766654 67999999
Q ss_pred cccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 175 IEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 175 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
..+++|++...... +++++.++|+|||.+++.+
T Consensus 101 ~~~~~~~~~~~~~~---------~l~~~~~~LkpgG~lli~~ 133 (195)
T TIGR00477 101 TVVFMFLQAGRVPE---------IIANMQAHTRPGGYNLIVA 133 (195)
T ss_pred ecccccCCHHHHHH---------HHHHHHHHhCCCcEEEEEE
Confidence 99999987544322 6999999999999866654
No 34
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.72 E-value=9.4e-17 Score=137.63 Aligned_cols=109 Identities=21% Similarity=0.384 Sum_probs=92.3
Q ss_pred HHHHHHcCCCCCCeEEEEcCCCChHHHHHHhh-cCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCC
Q 042544 90 HFLALQLGLKSGQKVLDVGCGIGGPLREIAQF-SSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNS 168 (305)
Q Consensus 90 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 168 (305)
..++..+.+.++.+|||||||+|.++..+++. ++.+|+|+|+|+.|++.|+++. .++.++.+|+..+. ++++
T Consensus 21 ~~ll~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~------~~~~~~~~d~~~~~-~~~~ 93 (258)
T PRK01683 21 RDLLARVPLENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRL------PDCQFVEADIASWQ-PPQA 93 (258)
T ss_pred HHHHhhCCCcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhC------CCCeEEECchhccC-CCCC
Confidence 34445566778899999999999999999854 5789999999999999998763 35889999998764 4568
Q ss_pred eeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 169 FDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 169 fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
||+|++..+++|+++... .++++.++|+|||.+++..
T Consensus 94 fD~v~~~~~l~~~~d~~~-----------~l~~~~~~LkpgG~~~~~~ 130 (258)
T PRK01683 94 LDLIFANASLQWLPDHLE-----------LFPRLVSLLAPGGVLAVQM 130 (258)
T ss_pred ccEEEEccChhhCCCHHH-----------HHHHHHHhcCCCcEEEEEC
Confidence 999999999999998765 5999999999999998864
No 35
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.72 E-value=8.2e-18 Score=133.62 Aligned_cols=99 Identities=35% Similarity=0.574 Sum_probs=82.5
Q ss_pred CCCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEEeccc
Q 042544 98 LKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIEA 177 (305)
Q Consensus 98 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~ 177 (305)
..++.+|||+|||+|.++..+++. +.+++|+|+|+.+++. ..+.....+....+.++++||+|++..+
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~g~D~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~fD~i~~~~~ 87 (161)
T PF13489_consen 20 LKPGKRVLDIGCGTGSFLRALAKR-GFEVTGVDISPQMIEK-----------RNVVFDNFDAQDPPFPDGSFDLIICNDV 87 (161)
T ss_dssp TTTTSEEEEESSTTSHHHHHHHHT-TSEEEEEESSHHHHHH-----------TTSEEEEEECHTHHCHSSSEEEEEEESS
T ss_pred cCCCCEEEEEcCCCCHHHHHHHHh-CCEEEEEECCHHHHhh-----------hhhhhhhhhhhhhhccccchhhHhhHHH
Confidence 567889999999999999999876 6799999999999986 1244444444444556789999999999
Q ss_pred ccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEeccC
Q 042544 178 TCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEKDL 219 (305)
Q Consensus 178 l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~~~~ 219 (305)
++|++++.. +++++.++|+|||.+++.+...
T Consensus 88 l~~~~d~~~-----------~l~~l~~~LkpgG~l~~~~~~~ 118 (161)
T PF13489_consen 88 LEHLPDPEE-----------FLKELSRLLKPGGYLVISDPNR 118 (161)
T ss_dssp GGGSSHHHH-----------HHHHHHHCEEEEEEEEEEEEBT
T ss_pred HhhcccHHH-----------HHHHHHHhcCCCCEEEEEEcCC
Confidence 999998766 6999999999999999987543
No 36
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.71 E-value=2.5e-16 Score=127.27 Aligned_cols=103 Identities=24% Similarity=0.284 Sum_probs=87.2
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHh-hcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEEec
Q 042544 97 GLKSGQKVLDVGCGIGGPLREIAQ-FSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAI 175 (305)
Q Consensus 97 ~~~~~~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~ 175 (305)
.++++.+|||+|||+|..+..++. .++++|+++|+|+.|++.|+++++..+.. +++++++|+.+++. +++||+|++.
T Consensus 42 ~l~~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~-~i~~~~~d~~~~~~-~~~fDlV~~~ 119 (187)
T PRK00107 42 YLPGGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLK-NVTVVHGRAEEFGQ-EEKFDVVTSR 119 (187)
T ss_pred hcCCCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCC-CEEEEeccHhhCCC-CCCccEEEEc
Confidence 344588999999999999999984 56789999999999999999999988875 49999999998766 6789999986
Q ss_pred ccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 176 EATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 176 ~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
. +.+... +++.+.+.|+|||.+++..
T Consensus 120 ~----~~~~~~-----------~l~~~~~~LkpGG~lv~~~ 145 (187)
T PRK00107 120 A----VASLSD-----------LVELCLPLLKPGGRFLALK 145 (187)
T ss_pred c----ccCHHH-----------HHHHHHHhcCCCeEEEEEe
Confidence 4 223322 5899999999999999864
No 37
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.71 E-value=1.5e-17 Score=121.72 Aligned_cols=96 Identities=28% Similarity=0.413 Sum_probs=80.3
Q ss_pred EEEEcCCCChHHHHHHhhc----CCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEEecc-cc
Q 042544 104 VLDVGCGIGGPLREIAQFS----STSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIE-AT 178 (305)
Q Consensus 104 vLDiGcG~G~~~~~l~~~~----~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~-~l 178 (305)
|||+|||+|..+..+++.. ..+++|+|+|+.|++.++++....+. +++++++|+.++++.+++||+|++.. ++
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~--~~~~~~~D~~~l~~~~~~~D~v~~~~~~~ 78 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGP--KVRFVQADARDLPFSDGKFDLVVCSGLSL 78 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTT--TSEEEESCTTCHHHHSSSEEEEEE-TTGG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCC--ceEEEECCHhHCcccCCCeeEEEEcCCcc
Confidence 7999999999999999652 38999999999999999999877655 68999999999888788999999955 59
Q ss_pred cccCChhhhhhcCCCCCcccHHHHHHHHHhCC
Q 042544 179 CHAPDAAEIEIGDGLPDIRSTRKCLEALKQAG 210 (305)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG 210 (305)
+|+.+.+... +++++.++|+|||
T Consensus 79 ~~~~~~~~~~---------ll~~~~~~l~pgG 101 (101)
T PF13649_consen 79 HHLSPEELEA---------LLRRIARLLRPGG 101 (101)
T ss_dssp GGSSHHHHHH---------HHHHHHHTEEEEE
T ss_pred CCCCHHHHHH---------HHHHHHHHhCCCC
Confidence 9988776644 6999999999998
No 38
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.70 E-value=2.1e-16 Score=126.88 Aligned_cols=109 Identities=21% Similarity=0.277 Sum_probs=87.9
Q ss_pred cCCCCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEEec
Q 042544 96 LGLKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAI 175 (305)
Q Consensus 96 ~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~ 175 (305)
....++.++||+|||.|..++.||+. |..|+++|+|+..++.+++.+...+++ ++..+.|+....++ +.||+|++.
T Consensus 26 ~~~~~~g~~LDlgcG~GRNalyLA~~-G~~VtAvD~s~~al~~l~~~a~~~~l~--i~~~~~Dl~~~~~~-~~yD~I~st 101 (192)
T PF03848_consen 26 VPLLKPGKALDLGCGEGRNALYLASQ-GFDVTAVDISPVALEKLQRLAEEEGLD--IRTRVADLNDFDFP-EEYDFIVST 101 (192)
T ss_dssp CTTS-SSEEEEES-TTSHHHHHHHHT-T-EEEEEESSHHHHHHHHHHHHHTT-T--EEEEE-BGCCBS-T-TTEEEEEEE
T ss_pred HhhcCCCcEEEcCCCCcHHHHHHHHC-CCeEEEEECCHHHHHHHHHHHhhcCce--eEEEEecchhcccc-CCcCEEEEE
Confidence 44456679999999999999999987 899999999999999999888877764 99999999887775 679999999
Q ss_pred ccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEec
Q 042544 176 EATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEK 217 (305)
Q Consensus 176 ~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~~ 217 (305)
.+++|++.+.... .++.+.+.++|||+.++...
T Consensus 102 ~v~~fL~~~~~~~---------i~~~m~~~~~pGG~~li~~~ 134 (192)
T PF03848_consen 102 VVFMFLQRELRPQ---------IIENMKAATKPGGYNLIVTF 134 (192)
T ss_dssp SSGGGS-GGGHHH---------HHHHHHHTEEEEEEEEEEEE
T ss_pred EEeccCCHHHHHH---------HHHHHHhhcCCcEEEEEEEe
Confidence 9999998765432 58888999999999888654
No 39
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.70 E-value=2.8e-16 Score=136.46 Aligned_cols=104 Identities=16% Similarity=0.201 Sum_probs=88.6
Q ss_pred CCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEEeccccc
Q 042544 100 SGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIEATC 179 (305)
Q Consensus 100 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~ 179 (305)
++.+|||+|||+|..+..++.. +.+|+|+|+|+.+++.+++++...++ ++++.+.|+...++ +++||+|++..+++
T Consensus 120 ~~~~vLDlGcG~G~~~~~la~~-g~~V~avD~s~~ai~~~~~~~~~~~l--~v~~~~~D~~~~~~-~~~fD~I~~~~vl~ 195 (287)
T PRK12335 120 KPGKALDLGCGQGRNSLYLALL-GFDVTAVDINQQSLENLQEIAEKENL--NIRTGLYDINSASI-QEEYDFILSTVVLM 195 (287)
T ss_pred CCCCEEEeCCCCCHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHHcCC--ceEEEEechhcccc-cCCccEEEEcchhh
Confidence 4459999999999999999975 78999999999999999999887766 58889999887655 67899999999999
Q ss_pred ccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 180 HAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
|++...... +++++.++|+|||++++..
T Consensus 196 ~l~~~~~~~---------~l~~~~~~LkpgG~~l~v~ 223 (287)
T PRK12335 196 FLNRERIPA---------IIKNMQEHTNPGGYNLIVC 223 (287)
T ss_pred hCCHHHHHH---------HHHHHHHhcCCCcEEEEEE
Confidence 987544322 6999999999999977654
No 40
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=99.70 E-value=4.7e-16 Score=136.50 Aligned_cols=120 Identities=23% Similarity=0.259 Sum_probs=101.1
Q ss_pred HHHHHHHcCCCCCCeEEEEcCCCChHHHHHHh-hcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCC
Q 042544 89 EHFLALQLGLKSGQKVLDVGCGIGGPLREIAQ-FSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDN 167 (305)
Q Consensus 89 ~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 167 (305)
.+.+...+.+.++.+|||||||+|.++..+++ .|+.+++++|. +.+++.+++++...++.++++++.+|+.+.+++.
T Consensus 138 ~~~l~~~~~~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~~- 215 (306)
T TIGR02716 138 IQLLLEEAKLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESYPE- 215 (306)
T ss_pred HHHHHHHcCCCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCCCCCC-
Confidence 34555667778889999999999999999984 57789999998 7999999999998888888999999998766653
Q ss_pred CeeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEeccCC
Q 042544 168 SFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEKDLA 220 (305)
Q Consensus 168 ~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~~~~~ 220 (305)
+|+|++..++|++++..... .+++++++|+|||.+++.+..+.
T Consensus 216 -~D~v~~~~~lh~~~~~~~~~---------il~~~~~~L~pgG~l~i~d~~~~ 258 (306)
T TIGR02716 216 -ADAVLFCRILYSANEQLSTI---------MCKKAFDAMRSGGRLLILDMVID 258 (306)
T ss_pred -CCEEEeEhhhhcCChHHHHH---------HHHHHHHhcCCCCEEEEEEeccC
Confidence 69999999999887765433 69999999999999999886443
No 41
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.69 E-value=1.5e-16 Score=133.47 Aligned_cols=104 Identities=28% Similarity=0.441 Sum_probs=92.5
Q ss_pred CeEEEEcCCCChHHHHHHhh-cCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEEecccccc
Q 042544 102 QKVLDVGCGIGGPLREIAQF-SSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIEATCH 180 (305)
Q Consensus 102 ~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~ 180 (305)
.+|||||||+|.++..+++. ++.+|+|+|+|+.+++.+++++...++..+++++..|+...+++ ++||+|++..+++|
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~-~~fD~I~~~~~l~~ 79 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFP-DTYDLVFGFEVIHH 79 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCC-CCCCEeehHHHHHh
Confidence 37999999999999999854 46899999999999999999998888888899999999776664 58999999999999
Q ss_pred cCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEec
Q 042544 181 APDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEK 217 (305)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~~ 217 (305)
+++... +++++.++|+|||.+++.+.
T Consensus 80 ~~~~~~-----------~l~~~~~~LkpgG~l~i~~~ 105 (224)
T smart00828 80 IKDKMD-----------LFSNISRHLKDGGHLVLADF 105 (224)
T ss_pred CCCHHH-----------HHHHHHHHcCCCCEEEEEEc
Confidence 988755 69999999999999999865
No 42
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.69 E-value=3.1e-16 Score=131.11 Aligned_cols=114 Identities=20% Similarity=0.237 Sum_probs=89.9
Q ss_pred HHHHHHHHHcC--CCCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCC
Q 042544 87 RHEHFLALQLG--LKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPF 164 (305)
Q Consensus 87 ~~~~~l~~~~~--~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~ 164 (305)
.....+...+. ..++.+|||+|||+|.++..++.. +.+|+|+|+|+.|++.|++++...+...++.+.++|+..++
T Consensus 40 ~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~-~~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~- 117 (219)
T TIGR02021 40 AMRRKLLDWLPKDPLKGKRVLDAGCGTGLLSIELAKR-GAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLC- 117 (219)
T ss_pred HHHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhCC-
Confidence 33344444444 557889999999999999999875 67999999999999999999877665557999999998765
Q ss_pred CCCCeeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceE
Q 042544 165 PDNSFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEV 213 (305)
Q Consensus 165 ~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~ 213 (305)
++||+|++..+++|++...... .+.++.+++++++.+.
T Consensus 118 --~~fD~ii~~~~l~~~~~~~~~~---------~l~~i~~~~~~~~~i~ 155 (219)
T TIGR02021 118 --GEFDIVVCMDVLIHYPASDMAK---------ALGHLASLTKERVIFT 155 (219)
T ss_pred --CCcCEEEEhhHHHhCCHHHHHH---------HHHHHHHHhCCCEEEE
Confidence 7899999999999987654322 5888888887554433
No 43
>PRK06922 hypothetical protein; Provisional
Probab=99.69 E-value=2.5e-16 Score=146.01 Aligned_cols=115 Identities=22% Similarity=0.299 Sum_probs=93.0
Q ss_pred HcCCCCCCeEEEEcCCCChHHHHHHh-hcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCC--CCCCCeeE
Q 042544 95 QLGLKSGQKVLDVGCGIGGPLREIAQ-FSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMP--FPDNSFDA 171 (305)
Q Consensus 95 ~~~~~~~~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~fD~ 171 (305)
.++..++.+|||+|||+|..+..+++ .++.+|+|+|+|+.|++.|+++....+ .+++++++|+.++| +++++||+
T Consensus 413 i~d~~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g--~~ie~I~gDa~dLp~~fedeSFDv 490 (677)
T PRK06922 413 ILDYIKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEG--RSWNVIKGDAINLSSSFEKESVDT 490 (677)
T ss_pred HhhhcCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcC--CCeEEEEcchHhCccccCCCCEEE
Confidence 34445688999999999999998884 578899999999999999998765443 35788999998877 77899999
Q ss_pred EEecccccccCC-----------hhhhhhcCCCCCcccHHHHHHHHHhCCceEEEeccCC
Q 042544 172 VYAIEATCHAPD-----------AAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEKDLA 220 (305)
Q Consensus 172 v~~~~~l~~~~~-----------~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~~~~~ 220 (305)
|+++.++|++.+ ... ..+++++.++|||||.+++.+..++
T Consensus 491 VVsn~vLH~L~syIp~~g~~f~~edl---------~kiLreI~RVLKPGGrLII~D~v~~ 541 (677)
T PRK06922 491 IVYSSILHELFSYIEYEGKKFNHEVI---------KKGLQSAYEVLKPGGRIIIRDGIMT 541 (677)
T ss_pred EEEchHHHhhhhhcccccccccHHHH---------HHHHHHHHHHcCCCcEEEEEeCccC
Confidence 999998887532 111 2369999999999999999875544
No 44
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=99.68 E-value=1.3e-16 Score=140.50 Aligned_cols=269 Identities=36% Similarity=0.574 Sum_probs=196.4
Q ss_pred HHHHHHhhhccCCCcHHHHHhhHHHHHHHHHhhhHHHHHhhcCCccccccCCCCccHHHHHHHHHHHHHHHcCCCCCCeE
Q 042544 25 AVEKYEKYHVCYGGEEEERKANYTDMVNKYYDLVTSFYEFGWGESFHFAPRWKGESLRESIKRHEHFLALQLGLKSGQKV 104 (305)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yd~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v 104 (305)
.+..|.++.+.....++.....+.+.++++|+...++|...|+..+|+++.+......+...++...........++..+
T Consensus 35 ~~~~~~~~~~~~~~~~~~e~~~~~e~~~~~y~~~~dl~~~~w~~~~h~~~~~e~~~~~~~~~~~~~~~~l~~~~~~~~~~ 114 (364)
T KOG1269|consen 35 SVDNYLTFIKKNAEINAEETEDLPEQIAKYYNNSTDLYERNWGQSFHFGRIPEGNSNEMFWIRHEGIVALRESCFPGSKV 114 (364)
T ss_pred hhhhHhhhhhhhcccccccccccchHHHHHhcccchhhhhhhccchhccCccchhHHHHHHHhhcchHHHhhcCcccccc
Confidence 34555555554555555558888999999999999999999999999998866554444433333333334456778899
Q ss_pred EEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEEecccccccCCh
Q 042544 105 LDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIEATCHAPDA 184 (305)
Q Consensus 105 LDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~ 184 (305)
+|+|||-|.....++....+.++|+|.++..+..+.......++..+..++.+|+...|++++.||.+.+..+.+|.++.
T Consensus 115 ~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fedn~fd~v~~ld~~~~~~~~ 194 (364)
T KOG1269|consen 115 LDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFEDNTFDGVRFLEVVCHAPDL 194 (364)
T ss_pred cccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCccccCcEEEEeecccCCcH
Confidence 99999999999999987679999999999999999888877778777888999999999999999999999999999999
Q ss_pred hhhhhcCCCCCcccHHHHHHHHHhCCceEEEeccCC--------------------------------------------
Q 042544 185 AEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEKDLA-------------------------------------------- 220 (305)
Q Consensus 185 ~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~~~~~-------------------------------------------- 220 (305)
.. .+.+++++++|||++++.+....
T Consensus 195 ~~-----------~y~Ei~rv~kpGG~~i~~e~i~~~~~~~~~~~~~~i~~~i~~gd~~~~~~~~~d~~~~~~~~~~~~~ 263 (364)
T KOG1269|consen 195 EK-----------VYAEIYRVLKPGGLFIVKEWIKTAKLKKPNSEHVDILLEIEGGDALPAETFNTDVFDLLKSFGFEHL 263 (364)
T ss_pred HH-----------HHHHHhcccCCCceEEeHHHHHhhhccCCCcccccccCceeccccccceeccccHHHHHhhccchhh
Confidence 87 59999999999999876432111
Q ss_pred -------CCCCCCCccccCCC-cccccc---cccchhHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHhcCCccc
Q 042544 221 -------PDSPLPWYLPLDTS-HFSLSS---FRLTSVGRFVTRNMVKALEFVGLAPKGSQRVQDFLEKAAEGLAAGGRKE 289 (305)
Q Consensus 221 -------~~~~~~~~~~~~~~-~~~~~~---~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 289 (305)
...+.||..|..+. ...+.. +.....++..........+.++..|.+..+...++..+...+.......
T Consensus 264 ~~~~dl~~~~s~~w~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~v~~~e~~~~~p~gs~~~~~~~~~~~~~l~~~~e~~ 343 (364)
T KOG1269|consen 264 KLEKDLALKSSFPWNTPLTRDTITHWQDKSALFRGRVATLKPGGKVLILEYIRGLPEGSSDFAKYIAQAAVGLKRGGETG 343 (364)
T ss_pred hhcccccCCCccccccccchhheeecccccHHHHhHhhccCcCceEEehhhcCcCCcCcchHHHHHHhhhhhceeccccc
Confidence 00111233333200 000000 0011112222222334556677788888899999999999999988888
Q ss_pred ccccceEE-EEEcCCC
Q 042544 290 IFTPMYFF-LARKPQH 304 (305)
Q Consensus 290 ~~~~~~~~-~arKp~~ 304 (305)
+|.+..+. +++||..
T Consensus 344 gF~~~~~~~~~~k~~~ 359 (364)
T KOG1269|consen 344 GFTPVDIEDVTDKPEE 359 (364)
T ss_pred CcccceeeEccccchh
Confidence 89998887 9999863
No 45
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.68 E-value=6.3e-16 Score=127.65 Aligned_cols=111 Identities=19% Similarity=0.132 Sum_probs=91.6
Q ss_pred HHHHHHHcCCCCCCeEEEEcCCCChHHHHHHhhc--CCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCC
Q 042544 89 EHFLALQLGLKSGQKVLDVGCGIGGPLREIAQFS--STSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPD 166 (305)
Q Consensus 89 ~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~ 166 (305)
...+...+.+.++.+|||+|||+|..+..+++.. .++|+++|+++.+++.|++++...+...+++++.+|+.+.....
T Consensus 61 ~~~~~~~l~~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~~ 140 (205)
T PRK13944 61 VAMMCELIEPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEKH 140 (205)
T ss_pred HHHHHHhcCCCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCccC
Confidence 4455667778888999999999999999988642 47999999999999999999988877667999999998754445
Q ss_pred CCeeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 167 NSFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 167 ~~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
.+||+|++..++.+++ +++.+.|+|||.+++..
T Consensus 141 ~~fD~Ii~~~~~~~~~-----------------~~l~~~L~~gG~lvi~~ 173 (205)
T PRK13944 141 APFDAIIVTAAASTIP-----------------SALVRQLKDGGVLVIPV 173 (205)
T ss_pred CCccEEEEccCcchhh-----------------HHHHHhcCcCcEEEEEE
Confidence 7899999988776543 45778999999998854
No 46
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.67 E-value=1.8e-15 Score=123.38 Aligned_cols=109 Identities=21% Similarity=0.217 Sum_probs=87.6
Q ss_pred HHHHHcCCCCCCeEEEEcCCCChHHHHHHh-hcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCe
Q 042544 91 FLALQLGLKSGQKVLDVGCGIGGPLREIAQ-FSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSF 169 (305)
Q Consensus 91 ~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~f 169 (305)
.+...+.+.++.+|||+|||+|.++..+++ .++.+|+++|+|+.+++.+++++...++. +++++.+|+.. ++ .++|
T Consensus 22 ~~~~~l~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~-~i~~~~~d~~~-~~-~~~~ 98 (187)
T PRK08287 22 LALSKLELHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCG-NIDIIPGEAPI-EL-PGKA 98 (187)
T ss_pred HHHHhcCCCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCC-CeEEEecCchh-hc-CcCC
Confidence 344566777889999999999999999985 45689999999999999999998877764 68999998753 34 3579
Q ss_pred eEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 170 DAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 170 D~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
|+|++.....++. . .++.+.+.|+|||.+++..
T Consensus 99 D~v~~~~~~~~~~---~-----------~l~~~~~~Lk~gG~lv~~~ 131 (187)
T PRK08287 99 DAIFIGGSGGNLT---A-----------IIDWSLAHLHPGGRLVLTF 131 (187)
T ss_pred CEEEECCCccCHH---H-----------HHHHHHHhcCCCeEEEEEE
Confidence 9999876544332 1 4888999999999998854
No 47
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=99.66 E-value=6e-17 Score=129.74 Aligned_cols=194 Identities=16% Similarity=0.204 Sum_probs=131.3
Q ss_pred HHHHHHhhhHHHHHhhcCCccccccCCCCccHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCCChHHHHHHhhcCCeEEEE
Q 042544 50 MVNKYYDLVTSFYEFGWGESFHFAPRWKGESLRESIKRHEHFLALQLGLKSGQKVLDVGCGIGGPLREIAQFSSTSVTGL 129 (305)
Q Consensus 50 ~~~~~yd~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gv 129 (305)
-+...||..++.|+..+-+++.|.- . .....++..++..+-.++||+|||||.....+... ..+++|+
T Consensus 86 YVe~LFD~~Ae~Fd~~LVdkL~Y~v---P--------~~l~emI~~~~~g~F~~~lDLGCGTGL~G~~lR~~-a~~ltGv 153 (287)
T COG4976 86 YVETLFDQYAERFDHILVDKLGYSV---P--------ELLAEMIGKADLGPFRRMLDLGCGTGLTGEALRDM-ADRLTGV 153 (287)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCcc---H--------HHHHHHHHhccCCccceeeecccCcCcccHhHHHH-HhhccCC
Confidence 3566677777777776666665541 1 12223333556666789999999999999998865 5789999
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCC-C-CCCCCeeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHH
Q 042544 130 NNNEYQITRGKELNRFAGVDKTCNFVKADFMKM-P-FPDNSFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALK 207 (305)
Q Consensus 130 D~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~-~-~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~ 207 (305)
|||..|++.|.++ ++- -.+.++++..+ + ..++.||+|++..|+.++.+.+. ++.-+...|+
T Consensus 154 DiS~nMl~kA~eK----g~Y--D~L~~Aea~~Fl~~~~~er~DLi~AaDVl~YlG~Le~-----------~~~~aa~~L~ 216 (287)
T COG4976 154 DISENMLAKAHEK----GLY--DTLYVAEAVLFLEDLTQERFDLIVAADVLPYLGALEG-----------LFAGAAGLLA 216 (287)
T ss_pred chhHHHHHHHHhc----cch--HHHHHHHHHHHhhhccCCcccchhhhhHHHhhcchhh-----------HHHHHHHhcC
Confidence 9999999999875 221 13445555432 2 45678999999999999998876 4888999999
Q ss_pred hCCceEEEeccCCCCCCCCCccccCCCcccccccccchhHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHhcCCc
Q 042544 208 QAGFEVIWEKDLAPDSPLPWYLPLDTSHFSLSSFRLTSVGRFVTRNMVKALEFVGLAPKGSQRVQDFLEKAAEGLAAGGR 287 (305)
Q Consensus 208 ~gG~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 287 (305)
|||.+.++..+.... | .|.+.+-.|+. .+..-++..+...|++++...+
T Consensus 217 ~gGlfaFSvE~l~~~----~------------~f~l~ps~RyA---------------H~~~YVr~~l~~~Gl~~i~~~~ 265 (287)
T COG4976 217 PGGLFAFSVETLPDD----G------------GFVLGPSQRYA---------------HSESYVRALLAASGLEVIAIED 265 (287)
T ss_pred CCceEEEEecccCCC----C------------Ceecchhhhhc---------------cchHHHHHHHHhcCceEEEeec
Confidence 999999987655422 1 12222222221 1223456777788887766443
Q ss_pred cc------ccccceEEEEEcCC
Q 042544 288 KE------IFTPMYFFLARKPQ 303 (305)
Q Consensus 288 ~~------~~~~~~~~~arKp~ 303 (305)
+. ...+..+++|||+.
T Consensus 266 ttiR~d~g~pv~G~L~iark~~ 287 (287)
T COG4976 266 TTIRRDAGEPVPGILVIARKKA 287 (287)
T ss_pred ccchhhcCCCCCCceEEEecCC
Confidence 32 35677899999974
No 48
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.66 E-value=3.4e-16 Score=124.45 Aligned_cols=105 Identities=20% Similarity=0.387 Sum_probs=92.5
Q ss_pred HcCCCCCCeEEEEcCCCChHHHHHH-hhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEE
Q 042544 95 QLGLKSGQKVLDVGCGIGGPLREIA-QFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVY 173 (305)
Q Consensus 95 ~~~~~~~~~vLDiGcG~G~~~~~l~-~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~ 173 (305)
..++.+..+|.|+|||+|..+..++ +.|++.++|+|-|+.|++.|+++. .+++|..+|+..+. ++..+|+++
T Consensus 25 ~Vp~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rl------p~~~f~~aDl~~w~-p~~~~dllf 97 (257)
T COG4106 25 RVPLERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRL------PDATFEEADLRTWK-PEQPTDLLF 97 (257)
T ss_pred hCCccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhC------CCCceecccHhhcC-CCCccchhh
Confidence 4566778899999999999999999 568999999999999999997763 46899999999875 356799999
Q ss_pred ecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEec
Q 042544 174 AIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEK 217 (305)
Q Consensus 174 ~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~~ 217 (305)
++.+++++|+... .+..+...|.|||++.+...
T Consensus 98 aNAvlqWlpdH~~-----------ll~rL~~~L~Pgg~LAVQmP 130 (257)
T COG4106 98 ANAVLQWLPDHPE-----------LLPRLVSQLAPGGVLAVQMP 130 (257)
T ss_pred hhhhhhhccccHH-----------HHHHHHHhhCCCceEEEECC
Confidence 9999999999866 59999999999999999754
No 49
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.66 E-value=2.9e-15 Score=123.22 Aligned_cols=102 Identities=23% Similarity=0.351 Sum_probs=82.7
Q ss_pred CCCCCeEEEEcCCCChHHHHHHhh-cCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEEecc
Q 042544 98 LKSGQKVLDVGCGIGGPLREIAQF-SSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIE 176 (305)
Q Consensus 98 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~ 176 (305)
++++.+|||+|||+|.++..+++. ++.+++|+|+|+.|++.|+++. .++.+.++|+.+ |+++++||+|++..
T Consensus 41 ~~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~------~~~~~~~~d~~~-~~~~~sfD~V~~~~ 113 (204)
T TIGR03587 41 LPKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYL------PNINIIQGSLFD-PFKDNFFDLVLTKG 113 (204)
T ss_pred cCCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhC------CCCcEEEeeccC-CCCCCCEEEEEECC
Confidence 456779999999999999999864 5789999999999999998753 246788999988 88889999999999
Q ss_pred cccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEec
Q 042544 177 ATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEK 217 (305)
Q Consensus 177 ~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~~ 217 (305)
+++|++.....+ .++++.+++ ++++++.+.
T Consensus 114 vL~hl~p~~~~~---------~l~el~r~~--~~~v~i~e~ 143 (204)
T TIGR03587 114 VLIHINPDNLPT---------AYRELYRCS--NRYILIAEY 143 (204)
T ss_pred hhhhCCHHHHHH---------HHHHHHhhc--CcEEEEEEe
Confidence 999997443322 577787776 556777664
No 50
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.66 E-value=7.9e-16 Score=126.48 Aligned_cols=110 Identities=22% Similarity=0.311 Sum_probs=87.8
Q ss_pred HHHcCCCCCCeEEEEcCCCChHHHHHHhh--cCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCC-CCCCCCe
Q 042544 93 ALQLGLKSGQKVLDVGCGIGGPLREIAQF--SSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKM-PFPDNSF 169 (305)
Q Consensus 93 ~~~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~f 169 (305)
...+.+.++.+|||+|||+|.++..++.. +..+|+++|+++.+++.+++++...++.+++.++.+|+.+. +..++.|
T Consensus 33 l~~l~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~~ 112 (198)
T PRK00377 33 LSKLRLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINEKF 112 (198)
T ss_pred HHHcCCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCCCC
Confidence 44678889999999999999999998853 35799999999999999999998887656899999999763 3234679
Q ss_pred eEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 170 DAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 170 D~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
|+|++... ..+... .++.+.+.|+|||.+++..
T Consensus 113 D~V~~~~~---~~~~~~-----------~l~~~~~~LkpgG~lv~~~ 145 (198)
T PRK00377 113 DRIFIGGG---SEKLKE-----------IISASWEIIKKGGRIVIDA 145 (198)
T ss_pred CEEEECCC---cccHHH-----------HHHHHHHHcCCCcEEEEEe
Confidence 99998542 122222 5899999999999998743
No 51
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=99.65 E-value=7.1e-16 Score=122.15 Aligned_cols=98 Identities=20% Similarity=0.316 Sum_probs=81.9
Q ss_pred CCCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCC-C-CCCCCCeeEEEec
Q 042544 98 LKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMK-M-PFPDNSFDAVYAI 175 (305)
Q Consensus 98 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~-~-~~~~~~fD~v~~~ 175 (305)
++|+.+|||+|||.|.+...|.+..+.++.|+|+++..+..+.++ .+.++++|+++ + .|++++||.|+.+
T Consensus 11 I~pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv~r--------Gv~Viq~Dld~gL~~f~d~sFD~VIls 82 (193)
T PF07021_consen 11 IEPGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACVAR--------GVSVIQGDLDEGLADFPDQSFDYVILS 82 (193)
T ss_pred cCCCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHHHc--------CCCEEECCHHHhHhhCCCCCccEEehH
Confidence 468999999999999999999976689999999999998877663 47799999987 4 4899999999999
Q ss_pred ccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEec
Q 042544 176 EATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEK 217 (305)
Q Consensus 176 ~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~~ 217 (305)
.+++++.+++. .++++.|+ |...+++-+
T Consensus 83 qtLQ~~~~P~~-----------vL~EmlRV---gr~~IVsFP 110 (193)
T PF07021_consen 83 QTLQAVRRPDE-----------VLEEMLRV---GRRAIVSFP 110 (193)
T ss_pred hHHHhHhHHHH-----------HHHHHHHh---cCeEEEEec
Confidence 99999999877 36666555 666666544
No 52
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.65 E-value=1.7e-15 Score=122.16 Aligned_cols=100 Identities=21% Similarity=0.301 Sum_probs=82.8
Q ss_pred CCCeEEEEcCCCChHHHHHHh-hcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEEecccc
Q 042544 100 SGQKVLDVGCGIGGPLREIAQ-FSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIEAT 178 (305)
Q Consensus 100 ~~~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l 178 (305)
++.+|||+|||+|..+..++. .+.++|+|+|+|+.|++.++++++..+.. +++++++|+.+++ .+++||+|++.. +
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~-~i~~i~~d~~~~~-~~~~fD~I~s~~-~ 118 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLN-NVEIVNGRAEDFQ-HEEQFDVITSRA-L 118 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCC-CeEEEecchhhcc-ccCCccEEEehh-h
Confidence 478999999999999999884 35689999999999999999998887764 6999999998864 357899999865 3
Q ss_pred cccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 179 CHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
+++++ .++.+.++|+|||.+++..
T Consensus 119 ~~~~~--------------~~~~~~~~LkpgG~lvi~~ 142 (181)
T TIGR00138 119 ASLNV--------------LLELTLNLLKVGGYFLAYK 142 (181)
T ss_pred hCHHH--------------HHHHHHHhcCCCCEEEEEc
Confidence 33322 4788899999999998863
No 53
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.65 E-value=3.2e-15 Score=113.37 Aligned_cols=111 Identities=20% Similarity=0.181 Sum_probs=88.3
Q ss_pred HHHHHcCCCCCCeEEEEcCCCChHHHHHHhh-cCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCC-CCCCCCC
Q 042544 91 FLALQLGLKSGQKVLDVGCGIGGPLREIAQF-SSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMK-MPFPDNS 168 (305)
Q Consensus 91 ~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~ 168 (305)
.+...+.+.++.+|||+|||+|.++..+++. ++.+|+++|+|+.+++.+++++...+.. +++++.+|+.. ++...++
T Consensus 10 ~~~~~~~~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 88 (124)
T TIGR02469 10 LTLSKLRLRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVS-NIVIVEGDAPEALEDSLPE 88 (124)
T ss_pred HHHHHcCCCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCC-ceEEEeccccccChhhcCC
Confidence 3444566777889999999999999999964 5689999999999999999988877654 68999998765 3333468
Q ss_pred eeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 169 FDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 169 fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
||+|++.....+.. . +++++.+.|+|||.+++..
T Consensus 89 ~D~v~~~~~~~~~~---~-----------~l~~~~~~Lk~gG~li~~~ 122 (124)
T TIGR02469 89 PDRVFIGGSGGLLQ---E-----------ILEAIWRRLRPGGRIVLNA 122 (124)
T ss_pred CCEEEECCcchhHH---H-----------HHHHHHHHcCCCCEEEEEe
Confidence 99999876543321 1 6999999999999998864
No 54
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.65 E-value=1.6e-15 Score=120.37 Aligned_cols=114 Identities=20% Similarity=0.301 Sum_probs=87.4
Q ss_pred HHHHHHcCCCCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCe
Q 042544 90 HFLALQLGLKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSF 169 (305)
Q Consensus 90 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~f 169 (305)
..+...++-..-.++||+|||.|.++..|+.. ..+++++|+|+..++.|+++.... ++++++++|+... .|+++|
T Consensus 33 ~~l~aaLp~~ry~~alEvGCs~G~lT~~LA~r-Cd~LlavDis~~Al~~Ar~Rl~~~---~~V~~~~~dvp~~-~P~~~F 107 (201)
T PF05401_consen 33 ATLLAALPRRRYRRALEVGCSIGVLTERLAPR-CDRLLAVDISPRALARARERLAGL---PHVEWIQADVPEF-WPEGRF 107 (201)
T ss_dssp HHHHHHHTTSSEEEEEEE--TTSHHHHHHGGG-EEEEEEEES-HHHHHHHHHHTTT----SSEEEEES-TTT----SS-E
T ss_pred HHHHHhcCccccceeEecCCCccHHHHHHHHh-hCceEEEeCCHHHHHHHHHhcCCC---CCeEEEECcCCCC-CCCCCe
Confidence 34444566667789999999999999999976 579999999999999999988643 4799999999774 567999
Q ss_pred eEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 170 DAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 170 D~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
|+|+++.+++++.+.+... .+++.+.+.|+|||.+++.+
T Consensus 108 DLIV~SEVlYYL~~~~~L~--------~~l~~l~~~L~pgG~LV~g~ 146 (201)
T PF05401_consen 108 DLIVLSEVLYYLDDAEDLR--------AALDRLVAALAPGGHLVFGH 146 (201)
T ss_dssp EEEEEES-GGGSSSHHHHH--------HHHHHHHHTEEEEEEEEEEE
T ss_pred eEEEEehHhHcCCCHHHHH--------HHHHHHHHHhCCCCEEEEEE
Confidence 9999999999998754321 15889999999999999965
No 55
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.65 E-value=7.4e-16 Score=131.80 Aligned_cols=111 Identities=13% Similarity=0.206 Sum_probs=87.1
Q ss_pred CCCCCCeEEEEcCCCChH----HHHHHhh-c-----CCeEEEEcCCHHHHHHHHHHHHh----cC---------------
Q 042544 97 GLKSGQKVLDVGCGIGGP----LREIAQF-S-----STSVTGLNNNEYQITRGKELNRF----AG--------------- 147 (305)
Q Consensus 97 ~~~~~~~vLDiGcG~G~~----~~~l~~~-~-----~~~v~gvD~s~~~l~~a~~~~~~----~~--------------- 147 (305)
...++.+|+|+|||||.- +..+++. + +.+|+|+|+|+.|++.|++.+-. .+
T Consensus 96 ~~~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~ 175 (264)
T smart00138 96 RHGRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVED 175 (264)
T ss_pred CCCCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCC
Confidence 344567999999999973 4444432 2 46899999999999999885310 00
Q ss_pred -------CCCCeEEEEcCCCCCCCCCCCeeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 148 -------VDKTCNFVKADFMKMPFPDNSFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 148 -------~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
+..++.|.+.|+.+.++++++||+|+|.++++|++++...+ +++++.++|+|||++++..
T Consensus 176 ~~~v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~---------~l~~l~~~L~pGG~L~lg~ 242 (264)
T smart00138 176 KYRVKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRK---------LLNRFAEALKPGGYLFLGH 242 (264)
T ss_pred eEEEChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHHHHH---------HHHHHHHHhCCCeEEEEEC
Confidence 12468999999998777788999999999999998766533 6999999999999999964
No 56
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.65 E-value=2.2e-15 Score=127.55 Aligned_cols=102 Identities=23% Similarity=0.312 Sum_probs=89.4
Q ss_pred CCCeEEEEcCCCChHHHHHHhh-cCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEEecccc
Q 042544 100 SGQKVLDVGCGIGGPLREIAQF-SSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIEAT 178 (305)
Q Consensus 100 ~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l 178 (305)
.+.+|||+|||+|.++..+++. +..+++++|+|+.+++.++++.. +++.++.+|+...++++++||+|++..++
T Consensus 34 ~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~-----~~~~~~~~d~~~~~~~~~~fD~vi~~~~l 108 (240)
T TIGR02072 34 IPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS-----ENVQFICGDAEKLPLEDSSFDLIVSNLAL 108 (240)
T ss_pred CCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC-----CCCeEEecchhhCCCCCCceeEEEEhhhh
Confidence 4579999999999999999854 46789999999999998887643 36889999999988888999999999999
Q ss_pred cccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEec
Q 042544 179 CHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEK 217 (305)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~~ 217 (305)
+|++++.. ++.++.++|+|||.+++.+.
T Consensus 109 ~~~~~~~~-----------~l~~~~~~L~~~G~l~~~~~ 136 (240)
T TIGR02072 109 QWCDDLSQ-----------ALSELARVLKPGGLLAFSTF 136 (240)
T ss_pred hhccCHHH-----------HHHHHHHHcCCCcEEEEEeC
Confidence 99988766 59999999999999998753
No 57
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.64 E-value=4.9e-15 Score=122.89 Aligned_cols=111 Identities=23% Similarity=0.249 Sum_probs=90.9
Q ss_pred HHHHHHHHcCCCCCCeEEEEcCCCChHHHHHHhhc--CCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCC
Q 042544 88 HEHFLALQLGLKSGQKVLDVGCGIGGPLREIAQFS--STSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFP 165 (305)
Q Consensus 88 ~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~ 165 (305)
....+...+.+.++.+|||||||+|..+..+++.. .++|+++|+++.+++.+++++...+. .+++++++|+.....+
T Consensus 64 ~~~~~~~~l~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~-~~v~~~~gd~~~~~~~ 142 (212)
T PRK13942 64 MVAIMCELLDLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGY-DNVEVIVGDGTLGYEE 142 (212)
T ss_pred HHHHHHHHcCCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCC-CCeEEEECCcccCCCc
Confidence 34556667788899999999999999999988653 47999999999999999999988776 4799999999875555
Q ss_pred CCCeeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 166 DNSFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 166 ~~~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
.++||+|++.....++ ...+.+.|+|||.+++..
T Consensus 143 ~~~fD~I~~~~~~~~~-----------------~~~l~~~LkpgG~lvi~~ 176 (212)
T PRK13942 143 NAPYDRIYVTAAGPDI-----------------PKPLIEQLKDGGIMVIPV 176 (212)
T ss_pred CCCcCEEEECCCcccc-----------------hHHHHHhhCCCcEEEEEE
Confidence 6889999987665432 445677899999988854
No 58
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.64 E-value=2e-17 Score=120.60 Aligned_cols=96 Identities=28% Similarity=0.395 Sum_probs=62.9
Q ss_pred EEEcCCCChHHHHHHhh-cCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCC--CCCCCeeEEEeccccccc
Q 042544 105 LDVGCGIGGPLREIAQF-SSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMP--FPDNSFDAVYAIEATCHA 181 (305)
Q Consensus 105 LDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~fD~v~~~~~l~~~ 181 (305)
||||||+|.++..+.+. +..+++|+|+|+.|++.+++++...+.. .......+..+.. ...++||+|++..+++|+
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l 79 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGND-NFERLRFDVLDLFDYDPPESFDLVVASNVLHHL 79 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT----EEEEE--SSS---CCC----SEEEEE-TTS--
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCc-ceeEEEeecCChhhcccccccceehhhhhHhhh
Confidence 79999999999999854 6789999999999999998888776532 2334443333321 122589999999999999
Q ss_pred CChhhhhhcCCCCCcccHHHHHHHHHhCCce
Q 042544 182 PDAAEIEIGDGLPDIRSTRKCLEALKQAGFE 212 (305)
Q Consensus 182 ~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~ 212 (305)
++... +++++.++|+|||++
T Consensus 80 ~~~~~-----------~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 80 EDIEA-----------VLRNIYRLLKPGGIL 99 (99)
T ss_dssp S-HHH-----------HHHHHTTT-TSS-EE
T ss_pred hhHHH-----------HHHHHHHHcCCCCCC
Confidence 77765 699999999999975
No 59
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.62 E-value=6.7e-15 Score=121.64 Aligned_cols=109 Identities=18% Similarity=0.182 Sum_probs=86.8
Q ss_pred CCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhc-----------CCCCCeEEEEcCCCCCCCC-C
Q 042544 99 KSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFA-----------GVDKTCNFVKADFMKMPFP-D 166 (305)
Q Consensus 99 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~-----------~~~~~~~~~~~d~~~~~~~-~ 166 (305)
+++.+|||+|||.|..+..||++ +.+|+|+|+|+.+++.+.+..... ....+++++++|+.+++.. .
T Consensus 33 ~~~~rvLd~GCG~G~da~~LA~~-G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~ 111 (213)
T TIGR03840 33 PAGARVFVPLCGKSLDLAWLAEQ-GHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAADL 111 (213)
T ss_pred CCCCeEEEeCCCchhHHHHHHhC-CCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCcccC
Confidence 56789999999999999999986 899999999999999864422100 0123689999999887642 3
Q ss_pred CCeeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEec
Q 042544 167 NSFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEK 217 (305)
Q Consensus 167 ~~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~~ 217 (305)
+.||.|+-..+++|++...... .++.+.++|+|||.+++...
T Consensus 112 ~~fD~i~D~~~~~~l~~~~R~~---------~~~~l~~lLkpgG~~ll~~~ 153 (213)
T TIGR03840 112 GPVDAVYDRAALIALPEEMRQR---------YAAHLLALLPPGARQLLITL 153 (213)
T ss_pred CCcCEEEechhhccCCHHHHHH---------HHHHHHHHcCCCCeEEEEEE
Confidence 5799999999999998766533 69999999999998766654
No 60
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=99.61 E-value=1.2e-14 Score=122.46 Aligned_cols=97 Identities=20% Similarity=0.286 Sum_probs=79.2
Q ss_pred CCCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEEeccc
Q 042544 98 LKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIEA 177 (305)
Q Consensus 98 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~ 177 (305)
..++.+|||+|||+|.++..+++. +.+|+|+|+|+.|++.|+++....+...++.+.++|+. ..+++||+|++..+
T Consensus 61 ~~~~~~vLDvGcG~G~~~~~l~~~-~~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~---~~~~~fD~v~~~~~ 136 (230)
T PRK07580 61 DLTGLRILDAGCGVGSLSIPLARR-GAKVVASDISPQMVEEARERAPEAGLAGNITFEVGDLE---SLLGRFDTVVCLDV 136 (230)
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCch---hccCCcCEEEEcch
Confidence 456789999999999999999875 67899999999999999999877766567899999953 34678999999999
Q ss_pred ccccCChhhhhhcCCCCCcccHHHHHHHHH
Q 042544 178 TCHAPDAAEIEIGDGLPDIRSTRKCLEALK 207 (305)
Q Consensus 178 l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~ 207 (305)
++|++++.... .++++.+.++
T Consensus 137 l~~~~~~~~~~---------~l~~l~~~~~ 157 (230)
T PRK07580 137 LIHYPQEDAAR---------MLAHLASLTR 157 (230)
T ss_pred hhcCCHHHHHH---------HHHHHHhhcC
Confidence 99988765432 4677776654
No 61
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.61 E-value=1.2e-14 Score=121.06 Aligned_cols=110 Identities=21% Similarity=0.237 Sum_probs=89.4
Q ss_pred HHHHHHHcCCCCCCeEEEEcCCCChHHHHHHhhc--CCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCC
Q 042544 89 EHFLALQLGLKSGQKVLDVGCGIGGPLREIAQFS--STSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPD 166 (305)
Q Consensus 89 ~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~ 166 (305)
...+...+.+.++.+|||||||+|..+..+++.. ..+|+++|+++.+++.|++++...++ ++++++++|+.......
T Consensus 66 ~~~~~~~l~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~-~~v~~~~~d~~~~~~~~ 144 (215)
T TIGR00080 66 VAMMTELLELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGL-DNVIVIVGDGTQGWEPL 144 (215)
T ss_pred HHHHHHHhCCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCC-CCeEEEECCcccCCccc
Confidence 3455566788899999999999999999998653 35799999999999999999998887 47999999998754345
Q ss_pred CCeeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 167 NSFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 167 ~~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
++||+|++.....+ ....+.+.|+|||++++..
T Consensus 145 ~~fD~Ii~~~~~~~-----------------~~~~~~~~L~~gG~lv~~~ 177 (215)
T TIGR00080 145 APYDRIYVTAAGPK-----------------IPEALIDQLKEGGILVMPV 177 (215)
T ss_pred CCCCEEEEcCCccc-----------------ccHHHHHhcCcCcEEEEEE
Confidence 68999998765433 2455778999999998864
No 62
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=99.61 E-value=2e-14 Score=111.34 Aligned_cols=138 Identities=21% Similarity=0.281 Sum_probs=101.0
Q ss_pred cCCCCccHHHHHHHHHHHHHHHc---CCCCCC-eEEEEcCCCChHHHHHHhh-cCCeEEEEcCCHHHHHHHHHHHHhcCC
Q 042544 74 PRWKGESLRESIKRHEHFLALQL---GLKSGQ-KVLDVGCGIGGPLREIAQF-SSTSVTGLNNNEYQITRGKELNRFAGV 148 (305)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~-~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~ 148 (305)
..|...... .+..+++.... .+.+.. +|||+|||.|.++..|++. ....++|+|.|+.+++.|+..+++.+.
T Consensus 40 EvWFg~~ae---~riv~wl~d~~~~~rv~~~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~ 116 (227)
T KOG1271|consen 40 EVWFGEDAE---ERIVDWLKDLIVISRVSKQADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGF 116 (227)
T ss_pred ceecCCcHH---HHHHHHHHhhhhhhhhcccccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCC
Confidence 345554333 34444554433 344444 9999999999999999953 356799999999999999999999998
Q ss_pred CCCeEEEEcCCCCCCCCCCCeeEEEeccccccc---CChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEeccCC
Q 042544 149 DKTCNFVKADFMKMPFPDNSFDAVYAIEATCHA---PDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEKDLA 220 (305)
Q Consensus 149 ~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~---~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~~~~~ 220 (305)
.+.|+|.+.|+....+..++||+|+--..+..+ |+...-+ ....+..+.+.|+|||+++|...++.
T Consensus 117 ~n~I~f~q~DI~~~~~~~~qfdlvlDKGT~DAisLs~d~~~~r------~~~Y~d~v~~ll~~~gifvItSCN~T 185 (227)
T KOG1271|consen 117 SNEIRFQQLDITDPDFLSGQFDLVLDKGTLDAISLSPDGPVGR------LVVYLDSVEKLLSPGGIFVITSCNFT 185 (227)
T ss_pred CcceeEEEeeccCCcccccceeEEeecCceeeeecCCCCcccc------eeeehhhHhhccCCCcEEEEEecCcc
Confidence 878999999999877778899999865544332 2211100 02268889999999999999876654
No 63
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.61 E-value=4.8e-15 Score=122.04 Aligned_cols=113 Identities=19% Similarity=0.181 Sum_probs=86.4
Q ss_pred CCCeEEEEcCCCChHHHHHHhh-cCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCC-CCCC--CCCCCeeEEEec
Q 042544 100 SGQKVLDVGCGIGGPLREIAQF-SSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADF-MKMP--FPDNSFDAVYAI 175 (305)
Q Consensus 100 ~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~-~~~~--~~~~~fD~v~~~ 175 (305)
++.+|||+|||+|.++..+++. ++.+|+|+|+|+.|++.+++++...+. .++.++++|+ ..++ +++++||+|++.
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~-~~v~~~~~d~~~~l~~~~~~~~~D~V~~~ 118 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGL-TNLRLLCGDAVEVLLDMFPDGSLDRIYLN 118 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCC-CCEEEEecCHHHHHHHHcCccccceEEEE
Confidence 6789999999999999999854 567999999999999999999887766 5799999999 6665 667889999986
Q ss_pred ccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 176 EATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 176 ~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
....+....... .......+++++.++|+|||.+++..
T Consensus 119 ~~~p~~~~~~~~---~~~~~~~~l~~i~~~LkpgG~l~i~~ 156 (202)
T PRK00121 119 FPDPWPKKRHHK---RRLVQPEFLALYARKLKPGGEIHFAT 156 (202)
T ss_pred CCCCCCCccccc---cccCCHHHHHHHHHHcCCCCEEEEEc
Confidence 543322111000 00001226999999999999999865
No 64
>PRK06202 hypothetical protein; Provisional
Probab=99.61 E-value=7.4e-15 Score=123.83 Aligned_cols=105 Identities=17% Similarity=0.207 Sum_probs=82.8
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHhh-----cCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeE
Q 042544 97 GLKSGQKVLDVGCGIGGPLREIAQF-----SSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDA 171 (305)
Q Consensus 97 ~~~~~~~vLDiGcG~G~~~~~l~~~-----~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~ 171 (305)
...++.+|||+|||+|.++..+++. ++.+|+|+|+|+.|++.|+++... .++.+.+.+...++.++++||+
T Consensus 57 ~~~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~----~~~~~~~~~~~~l~~~~~~fD~ 132 (232)
T PRK06202 57 SADRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRR----PGVTFRQAVSDELVAEGERFDV 132 (232)
T ss_pred CCCCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhcccc----CCCeEEEEecccccccCCCccE
Confidence 3356789999999999999888742 246999999999999999886532 2467777777777777789999
Q ss_pred EEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 172 VYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 172 v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
|+++.+++|+++++... +++++.++++ |.+++.+
T Consensus 133 V~~~~~lhh~~d~~~~~---------~l~~~~r~~~--~~~~i~d 166 (232)
T PRK06202 133 VTSNHFLHHLDDAEVVR---------LLADSAALAR--RLVLHND 166 (232)
T ss_pred EEECCeeecCChHHHHH---------HHHHHHHhcC--eeEEEec
Confidence 99999999999875422 6999999987 5555543
No 65
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=99.60 E-value=3.2e-14 Score=120.06 Aligned_cols=113 Identities=26% Similarity=0.414 Sum_probs=93.9
Q ss_pred HHHHHHcCCCCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCC-CCCCC
Q 042544 90 HFLALQLGLKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMP-FPDNS 168 (305)
Q Consensus 90 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~ 168 (305)
.++...+...++.+|||||||+|.++..+++. +.+++++|+++.+++.+++++...+. .+.++..|+.+.+ ..++.
T Consensus 38 ~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~-~~~v~~iD~s~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 114 (233)
T PRK05134 38 NYIREHAGGLFGKRVLDVGCGGGILSESMARL-GADVTGIDASEENIEVARLHALESGL--KIDYRQTTAEELAAEHPGQ 114 (233)
T ss_pred HHHHHhccCCCCCeEEEeCCCCCHHHHHHHHc-CCeEEEEcCCHHHHHHHHHHHHHcCC--ceEEEecCHHHhhhhcCCC
Confidence 44544555567889999999999999988875 78999999999999999988776554 4788888887754 34578
Q ss_pred eeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 169 FDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 169 fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
||+|++..+++|.+++.. +++.+.+.|+|||.+++..
T Consensus 115 fD~Ii~~~~l~~~~~~~~-----------~l~~~~~~L~~gG~l~v~~ 151 (233)
T PRK05134 115 FDVVTCMEMLEHVPDPAS-----------FVRACAKLVKPGGLVFFST 151 (233)
T ss_pred ccEEEEhhHhhccCCHHH-----------HHHHHHHHcCCCcEEEEEe
Confidence 999999999999998866 5899999999999998865
No 66
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.60 E-value=8.9e-15 Score=136.13 Aligned_cols=115 Identities=24% Similarity=0.310 Sum_probs=93.6
Q ss_pred HHHHcCCCCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCC--CCCCCCCe
Q 042544 92 LALQLGLKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMK--MPFPDNSF 169 (305)
Q Consensus 92 l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~--~~~~~~~f 169 (305)
+...+...++.+|||||||+|.++..+++. ..+|+|+|+|+.|++.+++.. +...++.++++|+.. +++++++|
T Consensus 29 il~~l~~~~~~~vLDlGcG~G~~~~~la~~-~~~v~giD~s~~~l~~a~~~~---~~~~~i~~~~~d~~~~~~~~~~~~f 104 (475)
T PLN02336 29 ILSLLPPYEGKSVLELGAGIGRFTGELAKK-AGQVIALDFIESVIKKNESIN---GHYKNVKFMCADVTSPDLNISDGSV 104 (475)
T ss_pred HHhhcCccCCCEEEEeCCCcCHHHHHHHhh-CCEEEEEeCCHHHHHHHHHHh---ccCCceEEEEecccccccCCCCCCE
Confidence 334555556789999999999999999976 679999999999998876532 223578999999963 67788899
Q ss_pred eEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEeccC
Q 042544 170 DAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEKDL 219 (305)
Q Consensus 170 D~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~~~~ 219 (305)
|+|++..+++|+++..... +++++.++|+|||++++.+...
T Consensus 105 D~I~~~~~l~~l~~~~~~~---------~l~~~~r~Lk~gG~l~~~d~~~ 145 (475)
T PLN02336 105 DLIFSNWLLMYLSDKEVEN---------LAERMVKWLKVGGYIFFRESCF 145 (475)
T ss_pred EEEehhhhHHhCCHHHHHH---------HHHHHHHhcCCCeEEEEEeccC
Confidence 9999999999998865332 6999999999999999977543
No 67
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=99.59 E-value=3.7e-14 Score=123.59 Aligned_cols=83 Identities=19% Similarity=0.304 Sum_probs=69.6
Q ss_pred CCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCC----CCCeEEEEcCCCCCCCCCCCeeEEEec
Q 042544 100 SGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGV----DKTCNFVKADFMKMPFPDNSFDAVYAI 175 (305)
Q Consensus 100 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~----~~~~~~~~~d~~~~~~~~~~fD~v~~~ 175 (305)
++.+|||+|||+|.++..+++. +.+|+|+|+|+.|++.++++....+. ..++.|.+.|+..+ +++||+|+|.
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~-g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l---~~~fD~Vv~~ 219 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALE-GAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL---SGKYDTVTCL 219 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc---CCCcCEEEEc
Confidence 5789999999999999999976 78999999999999999998765421 23578888888654 4789999999
Q ss_pred ccccccCChhh
Q 042544 176 EATCHAPDAAE 186 (305)
Q Consensus 176 ~~l~~~~~~~~ 186 (305)
.+++|+++...
T Consensus 220 ~vL~H~p~~~~ 230 (315)
T PLN02585 220 DVLIHYPQDKA 230 (315)
T ss_pred CEEEecCHHHH
Confidence 99999987643
No 68
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.59 E-value=2.5e-14 Score=123.44 Aligned_cols=94 Identities=24% Similarity=0.397 Sum_probs=78.3
Q ss_pred CCCeEEEEcCCCChHHHHHHhh-c---CCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEEec
Q 042544 100 SGQKVLDVGCGIGGPLREIAQF-S---STSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAI 175 (305)
Q Consensus 100 ~~~~vLDiGcG~G~~~~~l~~~-~---~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~ 175 (305)
+..+|||+|||+|.++..+++. + +..++|+|+|+.|++.|+++. +++.+.++|+.++|+++++||+|++.
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~------~~~~~~~~d~~~lp~~~~sfD~I~~~ 158 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY------PQVTFCVASSHRLPFADQSLDAIIRI 158 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC------CCCeEEEeecccCCCcCCceeEEEEe
Confidence 5578999999999999998853 2 247999999999999987752 35889999999999999999999986
Q ss_pred ccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEec
Q 042544 176 EATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEK 217 (305)
Q Consensus 176 ~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~~ 217 (305)
.. +. .++++.++|+|||.+++...
T Consensus 159 ~~----~~--------------~~~e~~rvLkpgG~li~~~p 182 (272)
T PRK11088 159 YA----PC--------------KAEELARVVKPGGIVITVTP 182 (272)
T ss_pred cC----CC--------------CHHHHHhhccCCCEEEEEeC
Confidence 43 11 47889999999999998754
No 69
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=99.59 E-value=1.6e-14 Score=121.94 Aligned_cols=111 Identities=19% Similarity=0.284 Sum_probs=89.2
Q ss_pred CCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEEecccc
Q 042544 99 KSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIEAT 178 (305)
Q Consensus 99 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l 178 (305)
-.|.+|||||||.|.++..++......|+|+|+++..+.+.+......+....+.+....++++|. .+.||.|+|.+|+
T Consensus 114 L~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp~-~~~FDtVF~MGVL 192 (315)
T PF08003_consen 114 LKGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLPN-LGAFDTVFSMGVL 192 (315)
T ss_pred cCCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhccc-cCCcCEEEEeeeh
Confidence 368899999999999999999764568999999998877655544444444344444456777776 6889999999999
Q ss_pred cccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEeccCCC
Q 042544 179 CHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEKDLAP 221 (305)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~~~~~~ 221 (305)
.|..+|-. .+.+++..|++||-+++.+..+..
T Consensus 193 YHrr~Pl~-----------~L~~Lk~~L~~gGeLvLETlvi~g 224 (315)
T PF08003_consen 193 YHRRSPLD-----------HLKQLKDSLRPGGELVLETLVIDG 224 (315)
T ss_pred hccCCHHH-----------HHHHHHHhhCCCCEEEEEEeeecC
Confidence 99999965 699999999999999998765543
No 70
>PRK04266 fibrillarin; Provisional
Probab=99.58 E-value=2.7e-14 Score=119.00 Aligned_cols=104 Identities=18% Similarity=0.199 Sum_probs=80.3
Q ss_pred HcCCCCCCeEEEEcCCCChHHHHHHhhc-CCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCC----CCCCCCe
Q 042544 95 QLGLKSGQKVLDVGCGIGGPLREIAQFS-STSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKM----PFPDNSF 169 (305)
Q Consensus 95 ~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~----~~~~~~f 169 (305)
.+++.++.+|||+|||+|.++..+++.. ..+|+|+|+++.|++.+.+++... .++.++.+|+... +++ ++|
T Consensus 67 ~l~i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~---~nv~~i~~D~~~~~~~~~l~-~~~ 142 (226)
T PRK04266 67 NFPIKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEER---KNIIPILADARKPERYAHVV-EKV 142 (226)
T ss_pred hCCCCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhc---CCcEEEECCCCCcchhhhcc-ccC
Confidence 4788899999999999999999999653 469999999999999887766542 4689999998751 223 569
Q ss_pred eEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEE
Q 042544 170 DAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIW 215 (305)
Q Consensus 170 D~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~ 215 (305)
|+|++. ++++.... .+++++.++|||||.+++.
T Consensus 143 D~i~~d-----~~~p~~~~--------~~L~~~~r~LKpGG~lvI~ 175 (226)
T PRK04266 143 DVIYQD-----VAQPNQAE--------IAIDNAEFFLKDGGYLLLA 175 (226)
T ss_pred CEEEEC-----CCChhHHH--------HHHHHHHHhcCCCcEEEEE
Confidence 999853 33332210 1489999999999999995
No 71
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=99.58 E-value=5e-14 Score=116.90 Aligned_cols=111 Identities=18% Similarity=0.159 Sum_probs=87.1
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhc-----------CCCCCeEEEEcCCCCCCCC
Q 042544 97 GLKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFA-----------GVDKTCNFVKADFMKMPFP 165 (305)
Q Consensus 97 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~-----------~~~~~~~~~~~d~~~~~~~ 165 (305)
.++++.+|||+|||.|..+..|+++ +.+|+|+|+|+.+++.+.+..... ....++++.++|+.+++..
T Consensus 34 ~~~~~~rvL~~gCG~G~da~~LA~~-G~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~ 112 (218)
T PRK13255 34 ALPAGSRVLVPLCGKSLDMLWLAEQ-GHEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAA 112 (218)
T ss_pred CCCCCCeEEEeCCCChHhHHHHHhC-CCeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCcc
Confidence 4456789999999999999999986 899999999999999864321100 0124689999999987533
Q ss_pred -CCCeeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEec
Q 042544 166 -DNSFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEK 217 (305)
Q Consensus 166 -~~~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~~ 217 (305)
.+.||+|+-..+++|++...... .++.+.++|+|||.+++...
T Consensus 113 ~~~~fd~v~D~~~~~~l~~~~R~~---------~~~~l~~lL~pgG~~~l~~~ 156 (218)
T PRK13255 113 DLADVDAVYDRAALIALPEEMRER---------YVQQLAALLPAGCRGLLVTL 156 (218)
T ss_pred cCCCeeEEEehHhHhhCCHHHHHH---------HHHHHHHHcCCCCeEEEEEE
Confidence 25799999999999998766543 69999999999997555443
No 72
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.57 E-value=1.2e-14 Score=118.90 Aligned_cols=113 Identities=16% Similarity=0.231 Sum_probs=85.9
Q ss_pred CCCeEEEEcCCCChHHHHHHh-hcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCC---CCCCCeeEEEec
Q 042544 100 SGQKVLDVGCGIGGPLREIAQ-FSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMP---FPDNSFDAVYAI 175 (305)
Q Consensus 100 ~~~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~---~~~~~fD~v~~~ 175 (305)
+..+|||||||+|.++..+++ .++..|+|+|+++.+++.|++++...++. +++++++|+.+++ ++++++|.|++.
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~-ni~~i~~d~~~~~~~~~~~~~~d~v~~~ 94 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLK-NLHVLCGDANELLDKFFPDGSLSKVFLN 94 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCC-CEEEEccCHHHHHHhhCCCCceeEEEEE
Confidence 456999999999999999994 57889999999999999999998887775 8999999997643 456689999876
Q ss_pred ccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 176 EATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 176 ~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
....+...... ...+....+++++.++|+|||.+.+.+
T Consensus 95 ~pdpw~k~~h~---~~r~~~~~~l~~~~r~LkpgG~l~~~t 132 (194)
T TIGR00091 95 FPDPWPKKRHN---KRRITQPHFLKEYANVLKKGGVIHFKT 132 (194)
T ss_pred CCCcCCCCCcc---ccccCCHHHHHHHHHHhCCCCEEEEEe
Confidence 54332221110 000111236999999999999998865
No 73
>PLN03075 nicotianamine synthase; Provisional
Probab=99.57 E-value=5.5e-14 Score=120.09 Aligned_cols=108 Identities=16% Similarity=0.146 Sum_probs=86.4
Q ss_pred CCCCeEEEEcCCCChHHHH-HH-h-hcCCeEEEEcCCHHHHHHHHHHHHh-cCCCCCeEEEEcCCCCCCCCCCCeeEEEe
Q 042544 99 KSGQKVLDVGCGIGGPLRE-IA-Q-FSSTSVTGLNNNEYQITRGKELNRF-AGVDKTCNFVKADFMKMPFPDNSFDAVYA 174 (305)
Q Consensus 99 ~~~~~vLDiGcG~G~~~~~-l~-~-~~~~~v~gvD~s~~~l~~a~~~~~~-~~~~~~~~~~~~d~~~~~~~~~~fD~v~~ 174 (305)
.++.+|+|||||.|.++.. ++ . .++++++|+|+++.+++.|++.+.. .++.++++|.++|+.+.+-..+.||+|++
T Consensus 122 ~~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF~ 201 (296)
T PLN03075 122 GVPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVFL 201 (296)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEEE
Confidence 3678999999997754433 33 2 4678999999999999999999864 67878899999999875433478999999
Q ss_pred cccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 175 IEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 175 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
. +++++......+ .++++.+.|+|||.+++-.
T Consensus 202 ~-ALi~~dk~~k~~---------vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 202 A-ALVGMDKEEKVK---------VIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred e-cccccccccHHH---------HHHHHHHhcCCCcEEEEec
Confidence 9 888884333322 6999999999999999853
No 74
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.56 E-value=2.3e-14 Score=114.78 Aligned_cols=109 Identities=22% Similarity=0.277 Sum_probs=84.2
Q ss_pred CCCeEEEEcCCCChHHHHHHhh-cCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEEecccc
Q 042544 100 SGQKVLDVGCGIGGPLREIAQF-SSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIEAT 178 (305)
Q Consensus 100 ~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l 178 (305)
++.+|||+|||+|..+..+++. +..+|+++|+++.+++.+++++...++.. +++++.|+.+. .++++||+|+++-.+
T Consensus 31 ~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~-v~~~~~d~~~~-~~~~~fD~Iv~NPP~ 108 (170)
T PF05175_consen 31 KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLEN-VEVVQSDLFEA-LPDGKFDLIVSNPPF 108 (170)
T ss_dssp TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTT-EEEEESSTTTT-CCTTCEEEEEE---S
T ss_pred cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCccc-ccccccccccc-ccccceeEEEEccch
Confidence 6779999999999999999964 55589999999999999999999988765 99999999763 346899999998765
Q ss_pred cccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 179 CHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
+.-.+....- ...+++++.+.|+|||.+++..
T Consensus 109 ~~~~~~~~~~------~~~~i~~a~~~Lk~~G~l~lv~ 140 (170)
T PF05175_consen 109 HAGGDDGLDL------LRDFIEQARRYLKPGGRLFLVI 140 (170)
T ss_dssp BTTSHCHHHH------HHHHHHHHHHHEEEEEEEEEEE
T ss_pred hcccccchhh------HHHHHHHHHHhccCCCEEEEEe
Confidence 5444311000 0126889999999999987654
No 75
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.55 E-value=6.6e-14 Score=124.47 Aligned_cols=118 Identities=15% Similarity=0.169 Sum_probs=90.7
Q ss_pred HHHHHHHcCCCCCCeEEEEcCCCChHHHHHHh-hcCCeEEEEcCCHHHHHHHHHHHHhcCCC--CCeEEEEcCCCCCCCC
Q 042544 89 EHFLALQLGLKSGQKVLDVGCGIGGPLREIAQ-FSSTSVTGLNNNEYQITRGKELNRFAGVD--KTCNFVKADFMKMPFP 165 (305)
Q Consensus 89 ~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~--~~~~~~~~d~~~~~~~ 165 (305)
.++++..++...+.+|||+|||+|.++..+++ .|..+|+++|+|+.+++.|+++++..+.. .+++++..|+... ++
T Consensus 217 trllL~~lp~~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~-~~ 295 (378)
T PRK15001 217 ARFFMQHLPENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSG-VE 295 (378)
T ss_pred HHHHHHhCCcccCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEcccccc-CC
Confidence 34556666655567999999999999999985 57789999999999999999998776542 3689999988652 34
Q ss_pred CCCeeEEEecccccccC---ChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 166 DNSFDAVYAIEATCHAP---DAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 166 ~~~fD~v~~~~~l~~~~---~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
+++||+|+|+-.++... +... .+++..+.++|+|||.+++..
T Consensus 296 ~~~fDlIlsNPPfh~~~~~~~~ia---------~~l~~~a~~~LkpGG~L~iV~ 340 (378)
T PRK15001 296 PFRFNAVLCNPPFHQQHALTDNVA---------WEMFHHARRCLKINGELYIVA 340 (378)
T ss_pred CCCEEEEEECcCcccCccCCHHHH---------HHHHHHHHHhcccCCEEEEEE
Confidence 56899999986665432 1111 126889999999999998864
No 76
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.54 E-value=1e-13 Score=112.09 Aligned_cols=115 Identities=18% Similarity=0.176 Sum_probs=86.6
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEEecc
Q 042544 97 GLKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIE 176 (305)
Q Consensus 97 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~ 176 (305)
...++.+|||+|||+|.++..+++. +.+|+++|+|+.+++.+++++...+. +++++.+|+...+ .++||+|+++.
T Consensus 16 ~~~~~~~vLdlG~G~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~--~~~fD~Vi~n~ 90 (179)
T TIGR00537 16 RELKPDDVLEIGAGTGLVAIRLKGK-GKCILTTDINPFAVKELRENAKLNNV--GLDVVMTDLFKGV--RGKFDVILFNP 90 (179)
T ss_pred HhcCCCeEEEeCCChhHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHHcCC--ceEEEEccccccc--CCcccEEEECC
Confidence 3345679999999999999999975 44999999999999999999887654 5888999987643 45899999998
Q ss_pred cccccCChhhh------hhcCCCC----CcccHHHHHHHHHhCCceEEEe
Q 042544 177 ATCHAPDAAEI------EIGDGLP----DIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 177 ~l~~~~~~~~~------~~~~~~~----~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
.+++.++.... ....+.. ...+++++.++|+|||.+++..
T Consensus 91 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~ 140 (179)
T TIGR00537 91 PYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQ 140 (179)
T ss_pred CCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEE
Confidence 87766543110 0000000 1236889999999999998875
No 77
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.54 E-value=1.5e-13 Score=110.76 Aligned_cols=110 Identities=23% Similarity=0.240 Sum_probs=94.3
Q ss_pred HHHHHHHcCCCCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCC
Q 042544 89 EHFLALQLGLKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNS 168 (305)
Q Consensus 89 ~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 168 (305)
...+...+.+.++.+|||||||+|+.+.-+++. ..+|+.+|..+...+.|++++...|.. ++.++++|....--+..+
T Consensus 61 vA~m~~~L~~~~g~~VLEIGtGsGY~aAvla~l-~~~V~siEr~~~L~~~A~~~L~~lg~~-nV~v~~gDG~~G~~~~aP 138 (209)
T COG2518 61 VARMLQLLELKPGDRVLEIGTGSGYQAAVLARL-VGRVVSIERIEELAEQARRNLETLGYE-NVTVRHGDGSKGWPEEAP 138 (209)
T ss_pred HHHHHHHhCCCCCCeEEEECCCchHHHHHHHHH-hCeEEEEEEcHHHHHHHHHHHHHcCCC-ceEEEECCcccCCCCCCC
Confidence 455667889999999999999999999999986 459999999999999999999999986 599999999873224588
Q ss_pred eeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEec
Q 042544 169 FDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEK 217 (305)
Q Consensus 169 fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~~ 217 (305)
||.|+...+...+|.. +.+.|++||++++...
T Consensus 139 yD~I~Vtaaa~~vP~~-----------------Ll~QL~~gGrlv~PvG 170 (209)
T COG2518 139 YDRIIVTAAAPEVPEA-----------------LLDQLKPGGRLVIPVG 170 (209)
T ss_pred cCEEEEeeccCCCCHH-----------------HHHhcccCCEEEEEEc
Confidence 9999998887776665 6688999999999653
No 78
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=99.53 E-value=1e-13 Score=122.77 Aligned_cols=117 Identities=13% Similarity=0.137 Sum_probs=90.0
Q ss_pred HcCCCCCCeEEEEcCCCChHHHHHH-hhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCC--CCCCCCeeE
Q 042544 95 QLGLKSGQKVLDVGCGIGGPLREIA-QFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKM--PFPDNSFDA 171 (305)
Q Consensus 95 ~~~~~~~~~vLDiGcG~G~~~~~l~-~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~fD~ 171 (305)
.+....+..+||||||+|.++..+| ..|+..++|+|+++.+++.+.+++...++. ++.++++|+..+ .++++++|.
T Consensus 117 ~~~~~~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~-NV~~i~~DA~~ll~~~~~~s~D~ 195 (390)
T PRK14121 117 FISKNQEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLK-NLLIINYDARLLLELLPSNSVEK 195 (390)
T ss_pred HhcCCCCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCC-cEEEEECCHHHhhhhCCCCceeE
Confidence 3444567799999999999999999 457899999999999999999999888774 799999999753 477899999
Q ss_pred EEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEec
Q 042544 172 VYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEK 217 (305)
Q Consensus 172 v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~~ 217 (305)
|++.....+...... .+....+++++.++|+|||.+.+.+.
T Consensus 196 I~lnFPdPW~KkrHR-----Rlv~~~fL~e~~RvLkpGG~l~l~TD 236 (390)
T PRK14121 196 IFVHFPVPWDKKPHR-----RVISEDFLNEALRVLKPGGTLELRTD 236 (390)
T ss_pred EEEeCCCCccccchh-----hccHHHHHHHHHHHcCCCcEEEEEEE
Confidence 987543222111110 01112379999999999999998763
No 79
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=99.53 E-value=1.6e-13 Score=119.91 Aligned_cols=124 Identities=12% Similarity=0.115 Sum_probs=89.9
Q ss_pred HHHHHHHHHHHHHcCCCCCCeEEEEcCCCChHHHHHHhhc--CCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 042544 83 ESIKRHEHFLALQLGLKSGQKVLDVGCGIGGPLREIAQFS--STSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFM 160 (305)
Q Consensus 83 ~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~ 160 (305)
..++.+.+.+...+ +++.+|||+|||||..+..+++.. +.+|+++|+|+.||+.+++++.......++.++++|+.
T Consensus 48 ~il~~~~~~ia~~~--~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~ 125 (301)
T TIGR03438 48 AILERHADEIAAAT--GAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFT 125 (301)
T ss_pred HHHHHHHHHHHHhh--CCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEccc
Confidence 33444444454444 366799999999999999998653 58999999999999999988765432235778899997
Q ss_pred C-CCCCCC----CeeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEec
Q 042544 161 K-MPFPDN----SFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEK 217 (305)
Q Consensus 161 ~-~~~~~~----~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~~ 217 (305)
+ ++++.. ...++++..++++++..+... +++++++.|+|||.+++...
T Consensus 126 ~~~~~~~~~~~~~~~~~~~gs~~~~~~~~e~~~---------~L~~i~~~L~pgG~~lig~d 178 (301)
T TIGR03438 126 QPLALPPEPAAGRRLGFFPGSTIGNFTPEEAVA---------FLRRIRQLLGPGGGLLIGVD 178 (301)
T ss_pred chhhhhcccccCCeEEEEecccccCCCHHHHHH---------HHHHHHHhcCCCCEEEEecc
Confidence 6 344332 233444556788887655533 79999999999999988643
No 80
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=99.53 E-value=1.9e-13 Score=113.61 Aligned_cols=108 Identities=23% Similarity=0.211 Sum_probs=87.2
Q ss_pred HHHHHHcCCCCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCe
Q 042544 90 HFLALQLGLKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSF 169 (305)
Q Consensus 90 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~f 169 (305)
..+...+.+.++.+|||+|||+|..+..+++. ..+|+++|+++.+++.+++++...++. +++++++|......+.++|
T Consensus 68 ~~l~~~l~~~~~~~VLeiG~GsG~~t~~la~~-~~~v~~vd~~~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~~f 145 (212)
T PRK00312 68 ARMTELLELKPGDRVLEIGTGSGYQAAVLAHL-VRRVFSVERIKTLQWEAKRRLKQLGLH-NVSVRHGDGWKGWPAYAPF 145 (212)
T ss_pred HHHHHhcCCCCCCEEEEECCCccHHHHHHHHH-hCEEEEEeCCHHHHHHHHHHHHHCCCC-ceEEEECCcccCCCcCCCc
Confidence 44555677888999999999999999988765 468999999999999999999887764 5999999986532234789
Q ss_pred eEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 170 DAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 170 D~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
|+|++.....++ .+.+.+.|+|||.+++..
T Consensus 146 D~I~~~~~~~~~-----------------~~~l~~~L~~gG~lv~~~ 175 (212)
T PRK00312 146 DRILVTAAAPEI-----------------PRALLEQLKEGGILVAPV 175 (212)
T ss_pred CEEEEccCchhh-----------------hHHHHHhcCCCcEEEEEE
Confidence 999987655443 445678999999998865
No 81
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=99.53 E-value=2.5e-14 Score=113.34 Aligned_cols=152 Identities=15% Similarity=0.110 Sum_probs=99.8
Q ss_pred EEEcCCHHHHHHHHHHHHhc--CCCCCeEEEEcCCCCCCCCCCCeeEEEecccccccCChhhhhhcCCCCCcccHHHHHH
Q 042544 127 TGLNNNEYQITRGKELNRFA--GVDKTCNFVKADFMKMPFPDNSFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLE 204 (305)
Q Consensus 127 ~gvD~s~~~l~~a~~~~~~~--~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~ 204 (305)
+|+|+|+.|++.|+++.... +...+++++++|+.++|+++++||+|++..+++++++... +++++++
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~~d~~~-----------~l~ei~r 69 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNVVDRLR-----------AMKEMYR 69 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecchhhcCCCHHH-----------HHHHHHH
Confidence 48999999999998776432 2234699999999999999999999999999999998866 6999999
Q ss_pred HHHhCCceEEEeccCCCCCCCCCccccCCCcccccccccchhHHHHHHHHHHHHHHh----ccCCCchHHHHHHHHHHHH
Q 042544 205 ALKQAGFEVIWEKDLAPDSPLPWYLPLDTSHFSLSSFRLTSVGRFVTRNMVKALEFV----GLAPKGSQRVQDFLEKAAE 280 (305)
Q Consensus 205 ~L~~gG~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~----~~~~~~~~~~~~~l~~~~~ 280 (305)
+|||||.+++.+..... ++.......+ +......+.+.+... ...++++ .- +.+.+++..+++++||
T Consensus 70 vLkpGG~l~i~d~~~~~----~~~~~~~~~~--~~~~~~~~~~~~~~~--~~~y~yl~~si~~-f~~~~el~~ll~~aGF 140 (160)
T PLN02232 70 VLKPGSRVSILDFNKSN----QSVTTFMQGW--MIDNVVVPVATVYDL--AKEYEYLKYSING-YLTGEELETLALEAGF 140 (160)
T ss_pred HcCcCeEEEEEECCCCC----hHHHHHHHHH--HccchHhhhhHHhCC--hHHHHhHHHHHHH-CcCHHHHHHHHHHcCC
Confidence 99999999998754321 1100000000 001122333333211 2223322 22 3345899999999999
Q ss_pred HHhcCCcccccccceEEEE
Q 042544 281 GLAAGGRKEIFTPMYFFLA 299 (305)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~a 299 (305)
..+.. ..-.++...+.+|
T Consensus 141 ~~~~~-~~~~~g~~~~~~~ 158 (160)
T PLN02232 141 SSACH-YEISGGFMGNLVA 158 (160)
T ss_pred CcceE-EECcchHhHeeEe
Confidence 87763 3334444455554
No 82
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.53 E-value=2e-13 Score=107.57 Aligned_cols=111 Identities=22% Similarity=0.191 Sum_probs=93.2
Q ss_pred HHHHHHcCCCCCCeEEEEcCCCChHHHHHHh-hcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCC-CCCCCC
Q 042544 90 HFLALQLGLKSGQKVLDVGCGIGGPLREIAQ-FSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMK-MPFPDN 167 (305)
Q Consensus 90 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~-~~~~~~ 167 (305)
...+..|.+.++.+++|||||||..+++++. .+.++|+++|-++++++..+++.++.+. ++++++.+++.+ ++- ..
T Consensus 24 al~ls~L~~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~-~n~~vv~g~Ap~~L~~-~~ 101 (187)
T COG2242 24 ALTLSKLRPRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGV-DNLEVVEGDAPEALPD-LP 101 (187)
T ss_pred HHHHHhhCCCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCC-CcEEEEeccchHhhcC-CC
Confidence 4455678999999999999999999999993 4689999999999999999999999995 689999999976 332 12
Q ss_pred CeeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEec
Q 042544 168 SFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEK 217 (305)
Q Consensus 168 ~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~~ 217 (305)
+||+|+.... ..++. .++.+...|+|||.+++...
T Consensus 102 ~~daiFIGGg-~~i~~--------------ile~~~~~l~~ggrlV~nai 136 (187)
T COG2242 102 SPDAIFIGGG-GNIEE--------------ILEAAWERLKPGGRLVANAI 136 (187)
T ss_pred CCCEEEECCC-CCHHH--------------HHHHHHHHcCcCCeEEEEee
Confidence 6999998877 44333 48999999999999999653
No 83
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=99.51 E-value=3.1e-14 Score=113.63 Aligned_cols=117 Identities=20% Similarity=0.232 Sum_probs=83.1
Q ss_pred HHHHcCCCC--CCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCC-CCCCCCC
Q 042544 92 LALQLGLKS--GQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMK-MPFPDNS 168 (305)
Q Consensus 92 l~~~~~~~~--~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~ 168 (305)
.++++.++. ..-|||||||+|..+..+... +...+|+|||+.||+.|.++-- . -.++.+|+-. +||.+++
T Consensus 40 aLELLalp~~~~~~iLDIGCGsGLSg~vL~~~-Gh~wiGvDiSpsML~~a~~~e~----e--gdlil~DMG~GlpfrpGt 112 (270)
T KOG1541|consen 40 ALELLALPGPKSGLILDIGCGSGLSGSVLSDS-GHQWIGVDISPSMLEQAVEREL----E--GDLILCDMGEGLPFRPGT 112 (270)
T ss_pred HHHHhhCCCCCCcEEEEeccCCCcchheeccC-CceEEeecCCHHHHHHHHHhhh----h--cCeeeeecCCCCCCCCCc
Confidence 344555544 678999999999998888764 7899999999999999987321 1 3578888865 8999999
Q ss_pred eeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEE
Q 042544 169 FDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIW 215 (305)
Q Consensus 169 fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~ 215 (305)
||.|+++.++.++-+.......+...-..++..++.+|++|+..++.
T Consensus 113 FDg~ISISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~Q 159 (270)
T KOG1541|consen 113 FDGVISISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQ 159 (270)
T ss_pred cceEEEeeeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEEE
Confidence 99999988766553321100000000123567788899999988775
No 84
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=99.51 E-value=3.8e-13 Score=112.85 Aligned_cols=104 Identities=28% Similarity=0.391 Sum_probs=89.1
Q ss_pred CCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCC-CCCeeEEEecccc
Q 042544 100 SGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFP-DNSFDAVYAIEAT 178 (305)
Q Consensus 100 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~fD~v~~~~~l 178 (305)
.+.+|||+|||+|.++..++.. +.+++++|+++.+++.+++++...+.. ++.+...|+.+++.. .++||+|++..++
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~-~~~v~~iD~s~~~~~~a~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~D~i~~~~~l 122 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARL-GANVTGIDASEENIEVAKLHAKKDPLL-KIEYRCTSVEDLAEKGAKSFDVVTCMEVL 122 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEeCCHHHhhcCCCCCccEEEehhHH
Confidence 4779999999999999988864 678999999999999999988765542 588999998876544 3789999999999
Q ss_pred cccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 179 CHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
+|+.++.. +++++.++|+|||.+++..
T Consensus 123 ~~~~~~~~-----------~l~~~~~~L~~gG~l~i~~ 149 (224)
T TIGR01983 123 EHVPDPQA-----------FIRACAQLLKPGGILFFST 149 (224)
T ss_pred HhCCCHHH-----------HHHHHHHhcCCCcEEEEEe
Confidence 99998876 5999999999999988865
No 85
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=99.51 E-value=6.1e-13 Score=109.96 Aligned_cols=115 Identities=16% Similarity=0.110 Sum_probs=92.0
Q ss_pred cCCCCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHh-----------cCCCCCeEEEEcCCCCCCC
Q 042544 96 LGLKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRF-----------AGVDKTCNFVKADFMKMPF 164 (305)
Q Consensus 96 ~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~-----------~~~~~~~~~~~~d~~~~~~ 164 (305)
+.+.++.+||+.|||.|..+..|++. |.+|+|+|+|+..++.+.+.... .....++++.++|+.+++.
T Consensus 39 l~~~~~~rvLvPgCGkg~D~~~LA~~-G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~ 117 (226)
T PRK13256 39 LNINDSSVCLIPMCGCSIDMLFFLSK-GVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPK 117 (226)
T ss_pred cCCCCCCeEEEeCCCChHHHHHHHhC-CCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCc
Confidence 34456789999999999999999987 88999999999999988663200 0012468999999999864
Q ss_pred C---CCCeeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEeccCC
Q 042544 165 P---DNSFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEKDLA 220 (305)
Q Consensus 165 ~---~~~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~~~~~ 220 (305)
. .+.||+|+-..+++++|.....+ ..+.+.++|+|||.+++......
T Consensus 118 ~~~~~~~fD~VyDra~~~Alpp~~R~~---------Y~~~l~~lL~pgg~llll~~~~~ 167 (226)
T PRK13256 118 IANNLPVFDIWYDRGAYIALPNDLRTN---------YAKMMLEVCSNNTQILLLVMEHD 167 (226)
T ss_pred cccccCCcCeeeeehhHhcCCHHHHHH---------HHHHHHHHhCCCcEEEEEEEecC
Confidence 2 25799999999999998776644 79999999999999888765443
No 86
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.51 E-value=5.4e-14 Score=105.55 Aligned_cols=112 Identities=23% Similarity=0.330 Sum_probs=86.2
Q ss_pred CCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCC--CCCCCeeEEEecccc
Q 042544 101 GQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMP--FPDNSFDAVYAIEAT 178 (305)
Q Consensus 101 ~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~fD~v~~~~~l 178 (305)
|.+|||+|||+|.++..+++....+++|+|+++..++.++.++...+...+++++++|+.+.. +++++||+|+++-..
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP~ 80 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPPY 80 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--ST
T ss_pred CCEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCCC
Confidence 468999999999999999976358999999999999999999999888778999999998854 778999999997765
Q ss_pred cccCC-hhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 179 CHAPD-AAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 179 ~~~~~-~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
..... ..... . ....+++++.++|+|||.+++..
T Consensus 81 ~~~~~~~~~~~--~--~~~~~~~~~~~~L~~gG~~~~~~ 115 (117)
T PF13659_consen 81 GPRSGDKAALR--R--LYSRFLEAAARLLKPGGVLVFIT 115 (117)
T ss_dssp TSBTT----GG--C--HHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccccccchhhH--H--HHHHHHHHHHHHcCCCeEEEEEe
Confidence 43221 10000 0 00126899999999999988864
No 87
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.50 E-value=1.1e-13 Score=120.06 Aligned_cols=102 Identities=14% Similarity=0.172 Sum_probs=81.6
Q ss_pred CCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEEecccc
Q 042544 99 KSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIEAT 178 (305)
Q Consensus 99 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l 178 (305)
.++.+|||+|||+|.++..++.....+|+|+|+|+.+++.|++++...++...+.+...+... ..+++||+|+++...
T Consensus 158 ~~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~--~~~~~fDlVvan~~~ 235 (288)
T TIGR00406 158 LKDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQ--PIEGKADVIVANILA 235 (288)
T ss_pred CCCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEeccccc--ccCCCceEEEEecCH
Confidence 467899999999999998888654569999999999999999999888776667777776432 345789999987543
Q ss_pred cccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 179 CHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
..+. .++.++.++|+|||.++++.
T Consensus 236 ~~l~--------------~ll~~~~~~LkpgG~li~sg 259 (288)
T TIGR00406 236 EVIK--------------ELYPQFSRLVKPGGWLILSG 259 (288)
T ss_pred HHHH--------------HHHHHHHHHcCCCcEEEEEe
Confidence 3221 15889999999999999865
No 88
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.50 E-value=3e-13 Score=119.73 Aligned_cols=117 Identities=24% Similarity=0.278 Sum_probs=92.5
Q ss_pred HHHHHHcCCCCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCe
Q 042544 90 HFLALQLGLKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSF 169 (305)
Q Consensus 90 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~f 169 (305)
..+.....++++.+|||+|||||.++..++.. +.+++|+|+++.|+..+++++...+... +.+.++|+.++|+++++|
T Consensus 172 ~~~~~l~~~~~g~~vLDp~cGtG~~lieaa~~-~~~v~g~Di~~~~~~~a~~nl~~~g~~~-i~~~~~D~~~l~~~~~~~ 249 (329)
T TIGR01177 172 RAMVNLARVTEGDRVLDPFCGTGGFLIEAGLM-GAKVIGCDIDWKMVAGARINLEHYGIED-FFVKRGDATKLPLSSESV 249 (329)
T ss_pred HHHHHHhCCCCcCEEEECCCCCCHHHHHHHHh-CCeEEEEcCCHHHHHHHHHHHHHhCCCC-CeEEecchhcCCcccCCC
Confidence 44555667788999999999999999887764 7899999999999999999998888764 899999999988878899
Q ss_pred eEEEecccccc---cC-C-h-hhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 170 DAVYAIEATCH---AP-D-A-AEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 170 D~v~~~~~l~~---~~-~-~-~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
|+|++.-.... .. + . ... ..+++++.++|+|||.+++..
T Consensus 250 D~Iv~dPPyg~~~~~~~~~~~~l~--------~~~l~~~~r~Lk~gG~lv~~~ 294 (329)
T TIGR01177 250 DAIATDPPYGRSTTAAGDGLESLY--------ERSLEEFHEVLKSEGWIVYAV 294 (329)
T ss_pred CEEEECCCCcCcccccCCchHHHH--------HHHHHHHHHHccCCcEEEEEE
Confidence 99998633211 00 0 0 000 126899999999999988865
No 89
>PRK14968 putative methyltransferase; Provisional
Probab=99.50 E-value=5.3e-13 Score=108.77 Aligned_cols=119 Identities=21% Similarity=0.301 Sum_probs=85.8
Q ss_pred cCCCCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCC-eEEEEcCCCCCCCCCCCeeEEEe
Q 042544 96 LGLKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKT-CNFVKADFMKMPFPDNSFDAVYA 174 (305)
Q Consensus 96 ~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~-~~~~~~d~~~~~~~~~~fD~v~~ 174 (305)
+...++.+|||+|||+|.++..++.. +.+|+|+|+|+.+++.+++++...+...+ +.++++|+.+ ++++++||+|++
T Consensus 19 ~~~~~~~~vLd~G~G~G~~~~~l~~~-~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~d~vi~ 96 (188)
T PRK14968 19 AVDKKGDRVLEVGTGSGIVAIVAAKN-GKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFE-PFRGDKFDVILF 96 (188)
T ss_pred hhccCCCEEEEEccccCHHHHHHHhh-cceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccc-cccccCceEEEE
Confidence 33467789999999999999999976 79999999999999999999887766433 8899999876 345568999998
Q ss_pred cccccccCChhh------hhhcCCCC----CcccHHHHHHHHHhCCceEEEe
Q 042544 175 IEATCHAPDAAE------IEIGDGLP----DIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 175 ~~~l~~~~~~~~------~~~~~~~~----~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
...+........ .....+.. ...+++++.++|+|||.+++..
T Consensus 97 n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~ 148 (188)
T PRK14968 97 NPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQ 148 (188)
T ss_pred CCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEE
Confidence 755433211100 00000000 0125889999999999888764
No 90
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=99.49 E-value=7.8e-13 Score=108.86 Aligned_cols=111 Identities=23% Similarity=0.309 Sum_probs=96.4
Q ss_pred HHHHHHcCCCCCCeEEEEcCCCChHHHHHHhh--cCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCC
Q 042544 90 HFLALQLGLKSGQKVLDVGCGIGGPLREIAQF--SSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDN 167 (305)
Q Consensus 90 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 167 (305)
.++...+++.+|++|||.|.|+|.++..|+.. +.++|+.+|+-+...+.|++++...++.+++++..+|+.+.-+++
T Consensus 84 ~~I~~~~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~~~- 162 (256)
T COG2519 84 GYIVARLGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGIDEE- 162 (256)
T ss_pred HHHHHHcCCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEecccccccccc-
Confidence 34556789999999999999999999999953 458999999999999999999999999888999999998865554
Q ss_pred CeeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEec
Q 042544 168 SFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEK 217 (305)
Q Consensus 168 ~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~~ 217 (305)
.||+|+. .+|+|-. .++.+.++|+|||.+++..+
T Consensus 163 ~vDav~L-----Dmp~PW~-----------~le~~~~~Lkpgg~~~~y~P 196 (256)
T COG2519 163 DVDAVFL-----DLPDPWN-----------VLEHVSDALKPGGVVVVYSP 196 (256)
T ss_pred ccCEEEE-----cCCChHH-----------HHHHHHHHhCCCcEEEEEcC
Confidence 8999975 6788755 69999999999999998753
No 91
>PTZ00146 fibrillarin; Provisional
Probab=99.49 E-value=5.7e-13 Score=113.47 Aligned_cols=105 Identities=19% Similarity=0.185 Sum_probs=78.3
Q ss_pred HcCCCCCCeEEEEcCCCChHHHHHHhhc--CCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCC---CCCCCCe
Q 042544 95 QLGLKSGQKVLDVGCGIGGPLREIAQFS--STSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKM---PFPDNSF 169 (305)
Q Consensus 95 ~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~---~~~~~~f 169 (305)
.+.+.++.+|||+|||+|.++..++... ...|+++|+|+.|++...+.+.. ..++.+++.|+... ....++|
T Consensus 127 ~l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~---r~NI~~I~~Da~~p~~y~~~~~~v 203 (293)
T PTZ00146 127 NIPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKK---RPNIVPIIEDARYPQKYRMLVPMV 203 (293)
T ss_pred eeccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhh---cCCCEEEECCccChhhhhcccCCC
Confidence 3567899999999999999999999753 46899999999866544443322 14789999998641 2234579
Q ss_pred eEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEE
Q 042544 170 DAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIW 215 (305)
Q Consensus 170 D~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~ 215 (305)
|+|++... .++.... ++.++.+.|||||.++|.
T Consensus 204 DvV~~Dva---~pdq~~i----------l~~na~r~LKpGG~~vI~ 236 (293)
T PTZ00146 204 DVIFADVA---QPDQARI----------VALNAQYFLKNGGHFIIS 236 (293)
T ss_pred CEEEEeCC---CcchHHH----------HHHHHHHhccCCCEEEEE
Confidence 99988763 2443322 467899999999999994
No 92
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.49 E-value=7.4e-13 Score=108.70 Aligned_cols=111 Identities=19% Similarity=0.149 Sum_probs=84.7
Q ss_pred HHHHHHcCCCCCCeEEEEcCCCChHHHHHHh-hcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCC-CCCCCC
Q 042544 90 HFLALQLGLKSGQKVLDVGCGIGGPLREIAQ-FSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMK-MPFPDN 167 (305)
Q Consensus 90 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~-~~~~~~ 167 (305)
..+...+.+.++.+|||+|||+|.++..++. .++.+|+++|+|+.+++.+++++...+. .+++++.+|+.+ ++....
T Consensus 30 ~~l~~~l~~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~-~~v~~~~~d~~~~~~~~~~ 108 (196)
T PRK07402 30 LLLISQLRLEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGV-KNVEVIEGSAPECLAQLAP 108 (196)
T ss_pred HHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCC-CCeEEEECchHHHHhhCCC
Confidence 3455667778889999999999999999984 3568999999999999999999988776 469999999864 222123
Q ss_pred CeeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 168 SFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 168 ~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
.+|.++... ..+... +++++.+.|+|||.+++..
T Consensus 109 ~~d~v~~~~----~~~~~~-----------~l~~~~~~LkpgG~li~~~ 142 (196)
T PRK07402 109 APDRVCIEG----GRPIKE-----------ILQAVWQYLKPGGRLVATA 142 (196)
T ss_pred CCCEEEEEC----CcCHHH-----------HHHHHHHhcCCCeEEEEEe
Confidence 357665421 111112 6999999999999999875
No 93
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.49 E-value=5.4e-13 Score=117.93 Aligned_cols=116 Identities=17% Similarity=0.176 Sum_probs=87.9
Q ss_pred HHHHHcCCCCCCeEEEEcCCCChHHHHHHhh-cCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCe
Q 042544 91 FLALQLGLKSGQKVLDVGCGIGGPLREIAQF-SSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSF 169 (305)
Q Consensus 91 ~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~f 169 (305)
.+...+......+|||+|||+|.++..+++. +..+|+++|+|+.+++.++++++..++. .+++..|+... .+++|
T Consensus 187 lLl~~l~~~~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l~--~~~~~~D~~~~--~~~~f 262 (342)
T PRK09489 187 LLLSTLTPHTKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGLE--GEVFASNVFSD--IKGRF 262 (342)
T ss_pred HHHHhccccCCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC--CEEEEcccccc--cCCCc
Confidence 3444444444568999999999999999854 5679999999999999999999887653 57788887652 25789
Q ss_pred eEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 170 DAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 170 D~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
|+|+++..+|+........ ...+++++.+.|+|||.+++..
T Consensus 263 DlIvsNPPFH~g~~~~~~~------~~~~i~~a~~~LkpgG~L~iVa 303 (342)
T PRK09489 263 DMIISNPPFHDGIQTSLDA------AQTLIRGAVRHLNSGGELRIVA 303 (342)
T ss_pred cEEEECCCccCCccccHHH------HHHHHHHHHHhcCcCCEEEEEE
Confidence 9999998887643321100 0126899999999999998865
No 94
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=99.48 E-value=1.1e-13 Score=111.94 Aligned_cols=158 Identities=18% Similarity=0.188 Sum_probs=107.3
Q ss_pred hhHHHHHHHHHhhhHHHHHhhcCCccccccCCCCccHHHHHHHHHHHHHHHcCC-----CCCCeEEEEcCCCChHHHHHH
Q 042544 45 ANYTDMVNKYYDLVTSFYEFGWGESFHFAPRWKGESLRESIKRHEHFLALQLGL-----KSGQKVLDVGCGIGGPLREIA 119 (305)
Q Consensus 45 ~~~~~~~~~~yd~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~~vLDiGcG~G~~~~~l~ 119 (305)
+.+++...+||+......+.++|+--+.+. -.++.-..+|..+... ....++||+|+|.|..+..+.
T Consensus 3 ~~~y~~a~~YW~~v~atvdGMLGG~~~is~--------~Di~gS~~FL~~l~~~~~~~~~~~~~alDcGAGIGRVTk~lL 74 (218)
T PF05891_consen 3 KIWYEKAKEYWENVPATVDGMLGGFGHISR--------IDIQGSRNFLKKLKRGRKPGKPKFNRALDCGAGIGRVTKGLL 74 (218)
T ss_dssp CHHHHHHHHHHHTS-SSHHHHTTT-GGGHH--------HHHHHHHHHHHCCCT---------SEEEEET-TTTHHHHHTC
T ss_pred ccHHHHHHHHHcCCCCCccccccCCCCCCh--------HHHHHHHHHHHHHHhhcccCCCCcceEEecccccchhHHHHH
Confidence 345677888888887777777776543332 2233334455443222 245799999999999999887
Q ss_pred hhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEEecccccccCChhhhhhcCCCCCcccH
Q 042544 120 QFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIEATCHAPDAAEIEIGDGLPDIRST 199 (305)
Q Consensus 120 ~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l 199 (305)
...-.+|..+|+.+..++.|++.+... ...-.++.+..++++..++++||+|++.+++.|+.|.+.++ ++
T Consensus 75 l~~f~~VDlVEp~~~Fl~~a~~~l~~~-~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~lghLTD~dlv~---------fL 144 (218)
T PF05891_consen 75 LPVFDEVDLVEPVEKFLEQAKEYLGKD-NPRVGEFYCVGLQDFTPEEGKYDLIWIQWCLGHLTDEDLVA---------FL 144 (218)
T ss_dssp CCC-SEEEEEES-HHHHHHHHHHTCCG-GCCEEEEEES-GGG----TT-EEEEEEES-GGGS-HHHHHH---------HH
T ss_pred HHhcCEeEEeccCHHHHHHHHHHhccc-CCCcceEEecCHhhccCCCCcEeEEEehHhhccCCHHHHHH---------HH
Confidence 433679999999999999999865441 12346788888888765567999999999999999999876 79
Q ss_pred HHHHHHHHhCCceEEEeccCC
Q 042544 200 RKCLEALKQAGFEVIWEKDLA 220 (305)
Q Consensus 200 ~~~~~~L~~gG~~~i~~~~~~ 220 (305)
++++..|+|+|++++.+....
T Consensus 145 ~RCk~~L~~~G~IvvKEN~~~ 165 (218)
T PF05891_consen 145 KRCKQALKPNGVIVVKENVSS 165 (218)
T ss_dssp HHHHHHEEEEEEEEEEEEEES
T ss_pred HHHHHhCcCCcEEEEEecCCC
Confidence 999999999999999885443
No 95
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.48 E-value=2.7e-13 Score=112.53 Aligned_cols=125 Identities=18% Similarity=0.137 Sum_probs=93.9
Q ss_pred HHHHcCCCCCCeEEEEcCCCChHHHHHHhh-cCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCC--CCCCC
Q 042544 92 LALQLGLKSGQKVLDVGCGIGGPLREIAQF-SSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMP--FPDNS 168 (305)
Q Consensus 92 l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~ 168 (305)
|..+..+....+|||+|||+|..++.++.+ +.++++|||+++.+.+.|+++++..++.++++++++|+..+. ....+
T Consensus 36 L~~~~~~~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~~ 115 (248)
T COG4123 36 LAAFAPVPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFAS 115 (248)
T ss_pred HHhhcccccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccccc
Confidence 334566667889999999999999999965 569999999999999999999999999999999999998853 33457
Q ss_pred eeEEEecccccccCCh----hhhhh---cCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 169 FDAVYAIEATCHAPDA----AEIEI---GDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 169 fD~v~~~~~l~~~~~~----~~~~~---~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
||+|+|+--..-.... ....+ .-......+++.+.++|||||.+.+..
T Consensus 116 fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~ 170 (248)
T COG4123 116 FDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVH 170 (248)
T ss_pred cCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEe
Confidence 9999997544332222 00000 000111236788889999999998864
No 96
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=99.48 E-value=1.5e-13 Score=112.82 Aligned_cols=113 Identities=23% Similarity=0.224 Sum_probs=86.8
Q ss_pred HHHHHHHHHcCCCCCCeEEEEcCCCChHHHHHHhhc--CCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCC
Q 042544 87 RHEHFLALQLGLKSGQKVLDVGCGIGGPLREIAQFS--STSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPF 164 (305)
Q Consensus 87 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~ 164 (305)
.....++..+.+.++.+|||||||+|+.+..++... ..+|+++|+.+..++.|++++...+.. ++.++++|......
T Consensus 59 ~~~a~~l~~L~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~-nv~~~~gdg~~g~~ 137 (209)
T PF01135_consen 59 SMVARMLEALDLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGID-NVEVVVGDGSEGWP 137 (209)
T ss_dssp HHHHHHHHHTTC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTH-SEEEEES-GGGTTG
T ss_pred HHHHHHHHHHhcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccC-ceeEEEcchhhccc
Confidence 344566778889999999999999999999999653 357999999999999999999988775 79999999876333
Q ss_pred CCCCeeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEec
Q 042544 165 PDNSFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEK 217 (305)
Q Consensus 165 ~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~~ 217 (305)
+..+||.|++......+| ..+.+.|++||++++...
T Consensus 138 ~~apfD~I~v~~a~~~ip-----------------~~l~~qL~~gGrLV~pi~ 173 (209)
T PF01135_consen 138 EEAPFDRIIVTAAVPEIP-----------------EALLEQLKPGGRLVAPIG 173 (209)
T ss_dssp GG-SEEEEEESSBBSS-------------------HHHHHTEEEEEEEEEEES
T ss_pred cCCCcCEEEEeeccchHH-----------------HHHHHhcCCCcEEEEEEc
Confidence 457899999988776544 336677899999999653
No 97
>PRK14967 putative methyltransferase; Provisional
Probab=99.47 E-value=9.3e-13 Score=110.30 Aligned_cols=119 Identities=22% Similarity=0.237 Sum_probs=83.9
Q ss_pred cCCCCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEEec
Q 042544 96 LGLKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAI 175 (305)
Q Consensus 96 ~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~ 175 (305)
+.+.++.+|||+|||+|.++..++.....+|+++|+|+.+++.+++++...+. ++.++.+|+.+. +++++||+|++.
T Consensus 32 ~~~~~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~~~--~~~~~~~d~~~~-~~~~~fD~Vi~n 108 (223)
T PRK14967 32 EGLGPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLAGV--DVDVRRGDWARA-VEFRPFDVVVSN 108 (223)
T ss_pred cccCCCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhCC--eeEEEECchhhh-ccCCCeeEEEEC
Confidence 45667889999999999999999875335999999999999999998877665 478899998763 456789999987
Q ss_pred ccccccCChh-----h-hhhcCCCC----CcccHHHHHHHHHhCCceEEEec
Q 042544 176 EATCHAPDAA-----E-IEIGDGLP----DIRSTRKCLEALKQAGFEVIWEK 217 (305)
Q Consensus 176 ~~l~~~~~~~-----~-~~~~~~~~----~~~~l~~~~~~L~~gG~~~i~~~ 217 (305)
-....-.... . .....+.. -..+++++.++|+|||.+++...
T Consensus 109 pPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~ 160 (223)
T PRK14967 109 PPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQS 160 (223)
T ss_pred CCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence 4322111100 0 00000000 01257788999999999988653
No 98
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.47 E-value=5e-13 Score=116.77 Aligned_cols=109 Identities=17% Similarity=0.196 Sum_probs=87.1
Q ss_pred HHHHHHcCCCCCCeEEEEcCCCChHHHHHHhhcC--CeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCC
Q 042544 90 HFLALQLGLKSGQKVLDVGCGIGGPLREIAQFSS--TSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDN 167 (305)
Q Consensus 90 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 167 (305)
..+...+.++++.+|||||||+|.++..+++..+ ..|+++|+++.+++.|++++...+. +++.++++|+...+...+
T Consensus 70 a~ll~~L~i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~-~nV~~i~gD~~~~~~~~~ 148 (322)
T PRK13943 70 ALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGI-ENVIFVCGDGYYGVPEFA 148 (322)
T ss_pred HHHHHhcCCCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCC-CcEEEEeCChhhcccccC
Confidence 3455567788889999999999999999996533 4799999999999999999988876 479999999877554456
Q ss_pred CeeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 168 SFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 168 ~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
+||+|++...+.++ ...+.+.|+|||.+++..
T Consensus 149 ~fD~Ii~~~g~~~i-----------------p~~~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 149 PYDVIFVTVGVDEV-----------------PETWFTQLKEGGRVIVPI 180 (322)
T ss_pred CccEEEECCchHHh-----------------HHHHHHhcCCCCEEEEEe
Confidence 79999987554432 334678899999988854
No 99
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.46 E-value=1.3e-12 Score=113.14 Aligned_cols=116 Identities=16% Similarity=0.263 Sum_probs=84.5
Q ss_pred CCCCeEEEEcCCCChHHHHHHh-hcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEEeccc
Q 042544 99 KSGQKVLDVGCGIGGPLREIAQ-FSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIEA 177 (305)
Q Consensus 99 ~~~~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~ 177 (305)
.++.+|||+|||+|.++..++. .++.+|+|+|+|+.+++.|++++...++..+++++++|+.+ ++++++||+|+++--
T Consensus 120 ~~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~-~~~~~~fD~Iv~NPP 198 (284)
T TIGR03533 120 EPVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFA-ALPGRKYDLIVSNPP 198 (284)
T ss_pred CCCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhh-ccCCCCccEEEECCC
Confidence 3457999999999999999995 45789999999999999999999988877789999999865 234568999998621
Q ss_pred ------ccccCC-----hhhhhhcCC---CC-CcccHHHHHHHHHhCCceEEEe
Q 042544 178 ------TCHAPD-----AAEIEIGDG---LP-DIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 178 ------l~~~~~-----~~~~~~~~~---~~-~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
+.+++. +.. .+..+ +. -..++.++.+.|+|||.+++..
T Consensus 199 y~~~~~~~~l~~~~~~ep~~-al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~ 251 (284)
T TIGR03533 199 YVDAEDMADLPAEYHHEPEL-ALASGEDGLDLVRRILAEAADHLNENGVLVVEV 251 (284)
T ss_pred CCCccchhhCCHhhhcCHHH-HhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 111111 100 00000 00 0125788889999999988864
No 100
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=99.46 E-value=6.4e-13 Score=108.90 Aligned_cols=95 Identities=22% Similarity=0.352 Sum_probs=75.7
Q ss_pred CCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCC-C-CCCCCCeeEEEecc
Q 042544 99 KSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMK-M-PFPDNSFDAVYAIE 176 (305)
Q Consensus 99 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~-~-~~~~~~fD~v~~~~ 176 (305)
+++.+|||+|||+|.++..+++..+..++|+|+|+.+++.++++ +++++++|+.+ + ++++++||+|++..
T Consensus 12 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~~--------~~~~~~~d~~~~l~~~~~~sfD~Vi~~~ 83 (194)
T TIGR02081 12 PPGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVAR--------GVNVIQGDLDEGLEAFPDKSFDYVILSQ 83 (194)
T ss_pred CCCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHHc--------CCeEEEEEhhhcccccCCCCcCEEEEhh
Confidence 46789999999999999998865567899999999999887641 46788999875 4 36778999999999
Q ss_pred cccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEE
Q 042544 177 ATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIW 215 (305)
Q Consensus 177 ~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~ 215 (305)
+++|++++.. +++++.+. +|..++.
T Consensus 84 ~l~~~~d~~~-----------~l~e~~r~---~~~~ii~ 108 (194)
T TIGR02081 84 TLQATRNPEE-----------ILDEMLRV---GRHAIVS 108 (194)
T ss_pred HhHcCcCHHH-----------HHHHHHHh---CCeEEEE
Confidence 9999998765 46666554 5555554
No 101
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.45 E-value=8.4e-13 Score=114.52 Aligned_cols=115 Identities=19% Similarity=0.254 Sum_probs=83.4
Q ss_pred CCeEEEEcCCCChHHHHHHh-hcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEEecc---
Q 042544 101 GQKVLDVGCGIGGPLREIAQ-FSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIE--- 176 (305)
Q Consensus 101 ~~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~--- 176 (305)
..+|||+|||+|..+..++. .++.+|+|+|+|+.+++.|++++...+...+++++++|+.+ ++++++||+|+++-
T Consensus 115 ~~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~-~~~~~~fDlIvsNPPyi 193 (284)
T TIGR00536 115 ILHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFE-PLAGQKIDIIVSNPPYI 193 (284)
T ss_pred CCEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhc-cCcCCCccEEEECCCCC
Confidence 36999999999999999995 45689999999999999999999888876679999999876 34445899999852
Q ss_pred ----------cccccCChhhhhhcCCCC-CcccHHHHHHHHHhCCceEEEe
Q 042544 177 ----------ATCHAPDAAEIEIGDGLP-DIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 177 ----------~l~~~~~~~~~~~~~~~~-~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
+..|-|......-..|+. -..++.++.+.|+|||.+++..
T Consensus 194 ~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~ 244 (284)
T TIGR00536 194 DEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEI 244 (284)
T ss_pred CcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEE
Confidence 122222111100000000 0125778889999999988865
No 102
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.44 E-value=4.4e-13 Score=114.11 Aligned_cols=97 Identities=21% Similarity=0.274 Sum_probs=73.4
Q ss_pred CCCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEEeccc
Q 042544 98 LKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIEA 177 (305)
Q Consensus 98 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~ 177 (305)
+.++.+|||+|||+|..+..++.....+|+|+|+|+.+++.|++++...++...+.+..+| .+||+|+++..
T Consensus 117 ~~~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~~--------~~fD~Vvani~ 188 (250)
T PRK00517 117 VLPGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAELNGVELNVYLPQGD--------LKADVIVANIL 188 (250)
T ss_pred cCCCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEccCC--------CCcCEEEEcCc
Confidence 3578899999999999998877653446999999999999999998877664344433322 27999998643
Q ss_pred ccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 178 TCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 178 l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
...+ ...+.++.++|+|||.+++..
T Consensus 189 ~~~~--------------~~l~~~~~~~LkpgG~lilsg 213 (250)
T PRK00517 189 ANPL--------------LELAPDLARLLKPGGRLILSG 213 (250)
T ss_pred HHHH--------------HHHHHHHHHhcCCCcEEEEEE
Confidence 2211 115889999999999999864
No 103
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.43 E-value=1e-12 Score=114.75 Aligned_cols=114 Identities=18% Similarity=0.265 Sum_probs=82.8
Q ss_pred CeEEEEcCCCChHHHHHHh-hcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEEecccc--
Q 042544 102 QKVLDVGCGIGGPLREIAQ-FSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIEAT-- 178 (305)
Q Consensus 102 ~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l-- 178 (305)
.+|||+|||+|.++..++. .++.+|+++|+|+.+++.|++++...++..+++++++|+.+ ++++++||+|+++-..
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~-~l~~~~fDlIvsNPPyi~ 213 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFA-ALPGRRYDLIVSNPPYVD 213 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhh-hCCCCCccEEEECCCCCC
Confidence 6899999999999999985 46789999999999999999999988876679999999865 2345689999986211
Q ss_pred -----------cccCChhhhhhcCCCC-CcccHHHHHHHHHhCCceEEEe
Q 042544 179 -----------CHAPDAAEIEIGDGLP-DIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 179 -----------~~~~~~~~~~~~~~~~-~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
.|-|......-..|+. -..+++++.+.|+|||.+++..
T Consensus 214 ~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~ 263 (307)
T PRK11805 214 AEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEV 263 (307)
T ss_pred ccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 1111110000000000 0125788889999999998854
No 104
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=99.42 E-value=2.3e-12 Score=117.96 Aligned_cols=131 Identities=17% Similarity=0.159 Sum_probs=93.7
Q ss_pred HHHHHHcCCCCCCeEEEEcCCCChHHHHHHhh-cCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCC--CC
Q 042544 90 HFLALQLGLKSGQKVLDVGCGIGGPLREIAQF-SSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPF--PD 166 (305)
Q Consensus 90 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~--~~ 166 (305)
..+...+.+.++.+|||+|||+|..+..+++. +.++|+++|+++.+++.++++++..|+...+.+..+|....+. ++
T Consensus 228 ~~~~~~L~~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~~~ 307 (426)
T TIGR00563 228 QWVATWLAPQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWAEN 307 (426)
T ss_pred HHHHHHhCCCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccccccc
Confidence 34455678888999999999999999999964 3589999999999999999999988875334446677665443 46
Q ss_pred CCeeEEEe------cccccccCChhhhhhcCCC-----CCcccHHHHHHHHHhCCceEEEeccCC
Q 042544 167 NSFDAVYA------IEATCHAPDAAEIEIGDGL-----PDIRSTRKCLEALKQAGFEVIWEKDLA 220 (305)
Q Consensus 167 ~~fD~v~~------~~~l~~~~~~~~~~~~~~~-----~~~~~l~~~~~~L~~gG~~~i~~~~~~ 220 (305)
++||.|++ .+++.+.|+.....-...+ .....+.++.++|||||.+++++..+.
T Consensus 308 ~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~ 372 (426)
T TIGR00563 308 EQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVL 372 (426)
T ss_pred cccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCC
Confidence 78999985 2356665553110000000 002268899999999999999886543
No 105
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.42 E-value=2.9e-12 Score=105.91 Aligned_cols=107 Identities=18% Similarity=0.109 Sum_probs=76.3
Q ss_pred CCCCCeEEEEcCCCChHHHHHHhh--cCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCC--------CCCC
Q 042544 98 LKSGQKVLDVGCGIGGPLREIAQF--SSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMP--------FPDN 167 (305)
Q Consensus 98 ~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~--------~~~~ 167 (305)
++++.+|||||||||.++..+++. +.++|+|+|+++ |. .. .+++++++|+.+.+ +.++
T Consensus 49 ~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~~----------~~-~~v~~i~~D~~~~~~~~~i~~~~~~~ 116 (209)
T PRK11188 49 FKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-MD----------PI-VGVDFLQGDFRDELVLKALLERVGDS 116 (209)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-cc----------CC-CCcEEEecCCCChHHHHHHHHHhCCC
Confidence 467889999999999999999865 246999999988 21 12 35899999998853 5678
Q ss_pred CeeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 168 SFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 168 ~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
+||+|++..+.+...++.............+++++.++|+|||.+++..
T Consensus 117 ~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~ 165 (209)
T PRK11188 117 KVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKV 165 (209)
T ss_pred CCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEE
Confidence 8999999776655443210000000000126899999999999999965
No 106
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=99.40 E-value=2.8e-12 Score=108.74 Aligned_cols=112 Identities=25% Similarity=0.283 Sum_probs=92.4
Q ss_pred HHHHHHcCCCCCCeEEEEcCCCChHHHHHH-hhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCC
Q 042544 90 HFLALQLGLKSGQKVLDVGCGIGGPLREIA-QFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNS 168 (305)
Q Consensus 90 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~-~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 168 (305)
..+.......+..+|||||+|+|.++..++ ++|+.+++.+|+ |..++.+++ .++++++.+|+. -++|.
T Consensus 90 ~~~~~~~d~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~-------~~rv~~~~gd~f-~~~P~-- 158 (241)
T PF00891_consen 90 DILLEAFDFSGFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE-------ADRVEFVPGDFF-DPLPV-- 158 (241)
T ss_dssp HHHHHHSTTTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH-------TTTEEEEES-TT-TCCSS--
T ss_pred hhhhccccccCccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc-------ccccccccccHH-hhhcc--
Confidence 344455667777899999999999999999 578999999999 888888877 468999999998 46665
Q ss_pred eeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhC--CceEEEeccCCC
Q 042544 169 FDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQA--GFEVIWEKDLAP 221 (305)
Q Consensus 169 fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~g--G~~~i~~~~~~~ 221 (305)
+|+++..+++|++++.+... .|+++++.|+|| |.++|.+..+..
T Consensus 159 ~D~~~l~~vLh~~~d~~~~~---------iL~~~~~al~pg~~g~llI~e~~~~~ 204 (241)
T PF00891_consen 159 ADVYLLRHVLHDWSDEDCVK---------ILRNAAAALKPGKDGRLLIIEMVLPD 204 (241)
T ss_dssp ESEEEEESSGGGS-HHHHHH---------HHHHHHHHSEECTTEEEEEEEEEECS
T ss_pred ccceeeehhhhhcchHHHHH---------HHHHHHHHhCCCCCCeEEEEeeccCC
Confidence 99999999999999988765 699999999999 999999876553
No 107
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.40 E-value=6.8e-12 Score=107.06 Aligned_cols=115 Identities=20% Similarity=0.325 Sum_probs=83.8
Q ss_pred CCCeEEEEcCCCChHHHHHHhh-cCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEEecccc
Q 042544 100 SGQKVLDVGCGIGGPLREIAQF-SSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIEAT 178 (305)
Q Consensus 100 ~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l 178 (305)
.+.+|||+|||+|.++..++.. +..+++|+|+|+.+++.+++++...+.. +++++++|+.+ ++++++||+|++.-..
T Consensus 87 ~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~-~~~~~~~d~~~-~~~~~~fD~Vi~npPy 164 (251)
T TIGR03534 87 GPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLD-NVTFLQSDWFE-PLPGGKFDLIVSNPPY 164 (251)
T ss_pred CCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCC-eEEEEECchhc-cCcCCceeEEEECCCC
Confidence 4569999999999999999954 5679999999999999999998887764 69999999976 4567889999985432
Q ss_pred cccCChh------h-----hhhcCCCCC----cccHHHHHHHHHhCCceEEEe
Q 042544 179 CHAPDAA------E-----IEIGDGLPD----IRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 179 ~~~~~~~------~-----~~~~~~~~~----~~~l~~~~~~L~~gG~~~i~~ 216 (305)
....+.. . .....+... ..+++++.++|+|||.+++..
T Consensus 165 ~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~ 217 (251)
T TIGR03534 165 IPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEI 217 (251)
T ss_pred CchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 2111100 0 000000000 125788999999999988853
No 108
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=99.39 E-value=4.5e-12 Score=116.32 Aligned_cols=128 Identities=19% Similarity=0.199 Sum_probs=95.0
Q ss_pred HHHHHcCCCCCCeEEEEcCCCChHHHHHHhh--cCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCC----C
Q 042544 91 FLALQLGLKSGQKVLDVGCGIGGPLREIAQF--SSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMP----F 164 (305)
Q Consensus 91 ~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~----~ 164 (305)
.+...+.+.++.+|||+|||+|..+..+++. ..++|+++|+++.+++.+++++...|+. +++++++|+..++ .
T Consensus 243 l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~-~v~~~~~D~~~~~~~~~~ 321 (434)
T PRK14901 243 LVAPLLDPQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLK-SIKILAADSRNLLELKPQ 321 (434)
T ss_pred HHHHHhCCCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCC-eEEEEeCChhhccccccc
Confidence 3445677888999999999999999999864 2469999999999999999999998875 5999999998765 3
Q ss_pred CCCCeeEEEec------ccccccCChhhhhhcCC---CC--CcccHHHHHHHHHhCCceEEEeccC
Q 042544 165 PDNSFDAVYAI------EATCHAPDAAEIEIGDG---LP--DIRSTRKCLEALKQAGFEVIWEKDL 219 (305)
Q Consensus 165 ~~~~fD~v~~~------~~l~~~~~~~~~~~~~~---~~--~~~~l~~~~~~L~~gG~~~i~~~~~ 219 (305)
..++||.|++. +++.+-|+.....-... +. ....+.++.+.|||||.++..+..+
T Consensus 322 ~~~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi 387 (434)
T PRK14901 322 WRGYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTL 387 (434)
T ss_pred ccccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 45789999962 34555554311000000 00 0236899999999999999887543
No 109
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=99.39 E-value=4.7e-12 Score=115.66 Aligned_cols=128 Identities=16% Similarity=0.236 Sum_probs=93.1
Q ss_pred HHHHcCCCCCCeEEEEcCCCChHHHHHHhh--cCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCC-CCCCC
Q 042544 92 LALQLGLKSGQKVLDVGCGIGGPLREIAQF--SSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMP-FPDNS 168 (305)
Q Consensus 92 l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~ 168 (305)
+...+.+.++.+|||+|||+|..+..+++. .+++|+++|+|+.+++.+++++.+.|+. +++++++|+..++ +.+++
T Consensus 229 ~~~~l~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~-~v~~~~~Da~~l~~~~~~~ 307 (431)
T PRK14903 229 VPLLMELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLS-SIEIKIADAERLTEYVQDT 307 (431)
T ss_pred HHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCC-eEEEEECchhhhhhhhhcc
Confidence 344567888999999999999999999864 3579999999999999999999998875 5899999998765 44678
Q ss_pred eeEEEec------ccccccCChhhhhh---cCCC--CCcccHHHHHHHHHhCCceEEEeccCC
Q 042544 169 FDAVYAI------EATCHAPDAAEIEI---GDGL--PDIRSTRKCLEALKQAGFEVIWEKDLA 220 (305)
Q Consensus 169 fD~v~~~------~~l~~~~~~~~~~~---~~~~--~~~~~l~~~~~~L~~gG~~~i~~~~~~ 220 (305)
||.|++. +++..-|+.....- ...+ .....+.++.+.|+|||.++.++..+.
T Consensus 308 fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~ 370 (431)
T PRK14903 308 FDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTVT 370 (431)
T ss_pred CCEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCC
Confidence 9999962 22322222100000 0000 002258899999999999999886543
No 110
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=99.39 E-value=5.3e-12 Score=108.24 Aligned_cols=124 Identities=16% Similarity=0.112 Sum_probs=90.3
Q ss_pred HcCCCCCCeEEEEcCCCChHHHHHHhhc--CCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEE
Q 042544 95 QLGLKSGQKVLDVGCGIGGPLREIAQFS--STSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAV 172 (305)
Q Consensus 95 ~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v 172 (305)
.+.+.++.+|||+|||+|..+..+++.. .+.|+++|+++.+++.++++++..+.. ++.+++.|+..++...+.||+|
T Consensus 66 ~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~-~v~~~~~D~~~~~~~~~~fD~V 144 (264)
T TIGR00446 66 ALEPDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVL-NVAVTNFDGRVFGAAVPKFDAI 144 (264)
T ss_pred HhCCCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCC-cEEEecCCHHHhhhhccCCCEE
Confidence 5677889999999999999999998642 469999999999999999999998874 6899999987765445679999
Q ss_pred Eec------ccccccCChhhhhhcCCC-----CCcccHHHHHHHHHhCCceEEEeccC
Q 042544 173 YAI------EATCHAPDAAEIEIGDGL-----PDIRSTRKCLEALKQAGFEVIWEKDL 219 (305)
Q Consensus 173 ~~~------~~l~~~~~~~~~~~~~~~-----~~~~~l~~~~~~L~~gG~~~i~~~~~ 219 (305)
++. +++.+-|+.........+ .....++++.+.|+|||.++.++..+
T Consensus 145 l~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~ 202 (264)
T TIGR00446 145 LLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSL 202 (264)
T ss_pred EEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 862 233333322100000000 00126889999999999999887543
No 111
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=99.38 E-value=4e-12 Score=117.01 Aligned_cols=123 Identities=15% Similarity=0.213 Sum_probs=90.6
Q ss_pred HHHcCCCCCCeEEEEcCCCChHHHHHHhh--cCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCee
Q 042544 93 ALQLGLKSGQKVLDVGCGIGGPLREIAQF--SSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFD 170 (305)
Q Consensus 93 ~~~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD 170 (305)
...+.+.++.+|||+|||+|..+..+++. ..++|+++|+|+.+++.+++++...|+. +++++++|+..++ ++++||
T Consensus 243 ~~~l~~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~-~v~~~~~Da~~~~-~~~~fD 320 (445)
T PRK14904 243 CLLLNPQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGIT-IIETIEGDARSFS-PEEQPD 320 (445)
T ss_pred HHhcCCCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCC-eEEEEeCcccccc-cCCCCC
Confidence 34567778899999999999999988853 2469999999999999999999988874 6999999998765 457899
Q ss_pred EEEec------ccccccCCh------hhhh-hcCCCCCcccHHHHHHHHHhCCceEEEeccC
Q 042544 171 AVYAI------EATCHAPDA------AEIE-IGDGLPDIRSTRKCLEALKQAGFEVIWEKDL 219 (305)
Q Consensus 171 ~v~~~------~~l~~~~~~------~~~~-~~~~~~~~~~l~~~~~~L~~gG~~~i~~~~~ 219 (305)
+|++- .++..-|+. ..+. +.. .....+.++.+.|+|||.+++.+..+
T Consensus 321 ~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~--~q~~iL~~a~~~lkpgG~lvystcs~ 380 (445)
T PRK14904 321 AILLDAPCTGTGVLGRRAELRWKLTPEKLAELVG--LQAELLDHAASLLKPGGVLVYATCSI 380 (445)
T ss_pred EEEEcCCCCCcchhhcCcchhhcCCHHHHHHHHH--HHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 99952 122222221 1000 000 00126899999999999999987544
No 112
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.37 E-value=2.8e-12 Score=109.29 Aligned_cols=103 Identities=23% Similarity=0.346 Sum_probs=79.0
Q ss_pred CCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEEecccc
Q 042544 99 KSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIEAT 178 (305)
Q Consensus 99 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l 178 (305)
.++.+|||+|||+|.+++..++....+|+|+|++|..++.|++++..+++...++....+....+ ..++||+|+++-.
T Consensus 161 ~~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~-~~~~~DvIVANIL- 238 (300)
T COG2264 161 KKGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEVP-ENGPFDVIVANIL- 238 (300)
T ss_pred cCCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhhc-ccCcccEEEehhh-
Confidence 37899999999999999999987556799999999999999999998887643334444443332 2368999998742
Q ss_pred cccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 179 CHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
.++-. .....+.+.|+|||.++++-
T Consensus 239 ---A~vl~----------~La~~~~~~lkpgg~lIlSG 263 (300)
T COG2264 239 ---AEVLV----------ELAPDIKRLLKPGGRLILSG 263 (300)
T ss_pred ---HHHHH----------HHHHHHHHHcCCCceEEEEe
Confidence 22211 15888999999999999874
No 113
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=99.37 E-value=9.9e-12 Score=105.39 Aligned_cols=119 Identities=19% Similarity=0.209 Sum_probs=92.3
Q ss_pred HHHHHHHcCCCCCCeEEEEcCCCChHHHHHHh-hcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCC
Q 042544 89 EHFLALQLGLKSGQKVLDVGCGIGGPLREIAQ-FSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDN 167 (305)
Q Consensus 89 ~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 167 (305)
.++|++.++...+.+|||+|||.|..+..+++ .|..+++-+|+|...++.|++++..++... ..+...|... +..+
T Consensus 147 S~lLl~~l~~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~-~~v~~s~~~~-~v~~- 223 (300)
T COG2813 147 SRLLLETLPPDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVEN-TEVWASNLYE-PVEG- 223 (300)
T ss_pred HHHHHHhCCccCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCCc-cEEEEecccc-cccc-
Confidence 35566677777777999999999999999995 567899999999999999999999887753 3677777765 4444
Q ss_pred CeeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 168 SFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 168 ~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
+||+|+|+--+|.-.+....- -.+.+.+..+.|++||.+.|..
T Consensus 224 kfd~IisNPPfh~G~~v~~~~------~~~~i~~A~~~L~~gGeL~iVa 266 (300)
T COG2813 224 KFDLIISNPPFHAGKAVVHSL------AQEIIAAAARHLKPGGELWIVA 266 (300)
T ss_pred cccEEEeCCCccCCcchhHHH------HHHHHHHHHHhhccCCEEEEEE
Confidence 899999988777443322100 0126889999999999998875
No 114
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=99.37 E-value=2.3e-12 Score=110.95 Aligned_cols=101 Identities=22% Similarity=0.312 Sum_probs=75.8
Q ss_pred CCCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEEeccc
Q 042544 98 LKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIEA 177 (305)
Q Consensus 98 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~ 177 (305)
..++.+|||+|||||.+++..+.....+|+|+|++|..++.|++++..+++..++.+. ...+ ...++||+|+++-.
T Consensus 159 ~~~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~--~~~~--~~~~~~dlvvANI~ 234 (295)
T PF06325_consen 159 VKPGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAELNGVEDRIEVS--LSED--LVEGKFDLVVANIL 234 (295)
T ss_dssp SSTTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHHTT-TTCEEES--CTSC--TCCS-EEEEEEES-
T ss_pred ccCCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHHcCCCeeEEEE--Eecc--cccccCCEEEECCC
Confidence 3567899999999999999998864568999999999999999999999987766542 2222 23588999998654
Q ss_pred ccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 178 TCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 178 l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
..-+- .....+.+.|+|||+++++-
T Consensus 235 ~~vL~--------------~l~~~~~~~l~~~G~lIlSG 259 (295)
T PF06325_consen 235 ADVLL--------------ELAPDIASLLKPGGYLILSG 259 (295)
T ss_dssp HHHHH--------------HHHHHCHHHEEEEEEEEEEE
T ss_pred HHHHH--------------HHHHHHHHhhCCCCEEEEcc
Confidence 33211 14777889999999999975
No 115
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.36 E-value=1.5e-11 Score=106.36 Aligned_cols=120 Identities=20% Similarity=0.315 Sum_probs=83.1
Q ss_pred HcCCCCCCeEEEEcCCCChHHHHHHhh-cCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEE
Q 042544 95 QLGLKSGQKVLDVGCGIGGPLREIAQF-SSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVY 173 (305)
Q Consensus 95 ~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~ 173 (305)
.....++.+|||+|||+|..+..++.. +..+|+|+|+|+.+++.+++++. .....++.++++|+.. ++++++||+|+
T Consensus 103 ~~~~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~-~~~~~~i~~~~~d~~~-~~~~~~fD~Iv 180 (275)
T PRK09328 103 ALLLKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAK-HGLGARVEFLQGDWFE-PLPGGRFDLIV 180 (275)
T ss_pred hccccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH-hCCCCcEEEEEccccC-cCCCCceeEEE
Confidence 344557789999999999999999954 56899999999999999999887 3334579999999865 23357899999
Q ss_pred ecccccc------cCChhh-----hhhcCCCCC----cccHHHHHHHHHhCCceEEEe
Q 042544 174 AIEATCH------APDAAE-----IEIGDGLPD----IRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 174 ~~~~l~~------~~~~~~-----~~~~~~~~~----~~~l~~~~~~L~~gG~~~i~~ 216 (305)
+.-.... +..... ..+..+... ..+++++.++|+|||.+++..
T Consensus 181 ~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~ 238 (275)
T PRK09328 181 SNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEI 238 (275)
T ss_pred ECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 8532211 110000 000000000 125778889999999998843
No 116
>PRK04457 spermidine synthase; Provisional
Probab=99.36 E-value=4.1e-12 Score=108.59 Aligned_cols=110 Identities=20% Similarity=0.164 Sum_probs=82.2
Q ss_pred CCCCCeEEEEcCCCChHHHHHHh-hcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCC-CCCCCCeeEEEec
Q 042544 98 LKSGQKVLDVGCGIGGPLREIAQ-FSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKM-PFPDNSFDAVYAI 175 (305)
Q Consensus 98 ~~~~~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~fD~v~~~ 175 (305)
.+++.+|||||||+|.++..+++ .++.+++++|+++.+++.|++.+...+..++++++++|+.++ +-..++||+|++.
T Consensus 64 ~~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D 143 (262)
T PRK04457 64 NPRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVD 143 (262)
T ss_pred CCCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEe
Confidence 34567999999999999999984 467899999999999999999876544446899999998652 2223679999974
Q ss_pred ccc-cccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEE
Q 042544 176 EAT-CHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIW 215 (305)
Q Consensus 176 ~~l-~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~ 215 (305)
..- ...+.. +....+++++.+.|+|||.+++.
T Consensus 144 ~~~~~~~~~~--------l~t~efl~~~~~~L~pgGvlvin 176 (262)
T PRK04457 144 GFDGEGIIDA--------LCTQPFFDDCRNALSSDGIFVVN 176 (262)
T ss_pred CCCCCCCccc--------cCcHHHHHHHHHhcCCCcEEEEE
Confidence 211 111111 11123799999999999999885
No 117
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=99.36 E-value=4.5e-12 Score=116.06 Aligned_cols=126 Identities=17% Similarity=0.227 Sum_probs=89.8
Q ss_pred HHHHcCCCCCCeEEEEcCCCChHHHHHHhhc-CCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCC--CCCCC
Q 042544 92 LALQLGLKSGQKVLDVGCGIGGPLREIAQFS-STSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMP--FPDNS 168 (305)
Q Consensus 92 l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~ 168 (305)
+...+.+.++.+|||+|||+|..+..+++.. +.+|+++|+|+.+++.+++++...+.. ++++++|+..++ +++++
T Consensus 236 ~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~--~~~~~~D~~~~~~~~~~~~ 313 (427)
T PRK10901 236 AATLLAPQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLK--ATVIVGDARDPAQWWDGQP 313 (427)
T ss_pred HHHHcCCCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCC--eEEEEcCcccchhhcccCC
Confidence 3446778889999999999999999999653 479999999999999999999888764 789999998753 34578
Q ss_pred eeEEEecc------cccccCChhhhhhcCCCC-----CcccHHHHHHHHHhCCceEEEeccC
Q 042544 169 FDAVYAIE------ATCHAPDAAEIEIGDGLP-----DIRSTRKCLEALKQAGFEVIWEKDL 219 (305)
Q Consensus 169 fD~v~~~~------~l~~~~~~~~~~~~~~~~-----~~~~l~~~~~~L~~gG~~~i~~~~~ 219 (305)
||.|++.- ++.+-|+.........+. ....+..+.++|+|||.+++.+..+
T Consensus 314 fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~ 375 (427)
T PRK10901 314 FDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSI 375 (427)
T ss_pred CCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 99999422 222222210000000000 0126889999999999999987533
No 118
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=99.36 E-value=1.6e-12 Score=105.51 Aligned_cols=104 Identities=18% Similarity=0.259 Sum_probs=77.2
Q ss_pred CCCC-eEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEEeccc
Q 042544 99 KSGQ-KVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIEA 177 (305)
Q Consensus 99 ~~~~-~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~ 177 (305)
.++. .++|+|||+|..++.++++ ..+|+|+|+|+.||+.|++................++.++--.+++.|+|+|..+
T Consensus 31 ~~~h~~a~DvG~G~Gqa~~~iae~-~k~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa 109 (261)
T KOG3010|consen 31 TEGHRLAWDVGTGNGQAARGIAEH-YKEVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGGEESVDLITAAQA 109 (261)
T ss_pred CCCcceEEEeccCCCcchHHHHHh-hhhheeecCCHHHHHHhhcCCCcccccCCccccccccccccCCCcceeeehhhhh
Confidence 3443 8999999999888888876 5799999999999999887543322222233444444444334899999999999
Q ss_pred ccccCChhhhhhcCCCCCcccHHHHHHHHHhCC-ceEEE
Q 042544 178 TCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAG-FEVIW 215 (305)
Q Consensus 178 l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG-~~~i~ 215 (305)
+|++..+. +.+++.++||+.| .+.+.
T Consensus 110 ~HWFdle~------------fy~~~~rvLRk~Gg~iavW 136 (261)
T KOG3010|consen 110 VHWFDLER------------FYKEAYRVLRKDGGLIAVW 136 (261)
T ss_pred HHhhchHH------------HHHHHHHHcCCCCCEEEEE
Confidence 99988765 5899999999877 55553
No 119
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=99.36 E-value=4.8e-12 Score=111.03 Aligned_cols=112 Identities=25% Similarity=0.326 Sum_probs=80.6
Q ss_pred CCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcC---------CCCCeEEEEcCCCCC----CCCC
Q 042544 100 SGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAG---------VDKTCNFVKADFMKM----PFPD 166 (305)
Q Consensus 100 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~---------~~~~~~~~~~d~~~~----~~~~ 166 (305)
++.+|||+|||-|..+.-+....-..++|+|||...++.|+++..... ..-...++.+|.... .+++
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~~ 141 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLPP 141 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSSS
T ss_pred CCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhccc
Confidence 778999999999998888875546899999999999999999983211 112457788888642 1333
Q ss_pred --CCeeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEecc
Q 042544 167 --NSFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEKD 218 (305)
Q Consensus 167 --~~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~~~ 218 (305)
..||+|-|.+++||.-..+... ..++.++...|+|||+++....+
T Consensus 142 ~~~~FDvVScQFalHY~Fese~~a-------r~~l~Nvs~~Lk~GG~FIgT~~d 188 (331)
T PF03291_consen 142 RSRKFDVVSCQFALHYAFESEEKA-------RQFLKNVSSLLKPGGYFIGTTPD 188 (331)
T ss_dssp TTS-EEEEEEES-GGGGGSSHHHH-------HHHHHHHHHTEEEEEEEEEEEE-
T ss_pred cCCCcceeehHHHHHHhcCCHHHH-------HHHHHHHHHhcCCCCEEEEEecC
Confidence 5899999999999986554321 22799999999999999987654
No 120
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=99.36 E-value=2.5e-12 Score=104.36 Aligned_cols=155 Identities=14% Similarity=0.124 Sum_probs=104.6
Q ss_pred eEEEEcCCCChHHHHHHh-hcC--CeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCC----CCCCCCCeeEEEec
Q 042544 103 KVLDVGCGIGGPLREIAQ-FSS--TSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMK----MPFPDNSFDAVYAI 175 (305)
Q Consensus 103 ~vLDiGcG~G~~~~~l~~-~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~----~~~~~~~fD~v~~~ 175 (305)
+||+||||.|.....+.+ .++ ..|+++|.||.+++..++..... ..++...+.|+.. -|.+.+++|.|+++
T Consensus 74 ~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~--e~~~~afv~Dlt~~~~~~~~~~~svD~it~I 151 (264)
T KOG2361|consen 74 TILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYD--ESRVEAFVWDLTSPSLKEPPEEGSVDIITLI 151 (264)
T ss_pred hheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccc--hhhhcccceeccchhccCCCCcCccceEEEE
Confidence 899999999999999874 333 79999999999999988865443 2355556666653 34667999999999
Q ss_pred ccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEeccCCCCCCCCCccccCCCcccccccccchhHHHHHHHHH
Q 042544 176 EATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEKDLAPDSPLPWYLPLDTSHFSLSSFRLTSVGRFVTRNMV 255 (305)
Q Consensus 176 ~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 255 (305)
+++..++...... +++++.++|||||.+++-+-..-+.....+. . ++.+..+..
T Consensus 152 FvLSAi~pek~~~---------a~~nl~~llKPGG~llfrDYg~~DlaqlRF~--~---------------~~~i~~nfY 205 (264)
T KOG2361|consen 152 FVLSAIHPEKMQS---------VIKNLRTLLKPGGSLLFRDYGRYDLAQLRFK--K---------------GQCISENFY 205 (264)
T ss_pred EEEeccChHHHHH---------HHHHHHHHhCCCcEEEEeecccchHHHHhcc--C---------------CceeecceE
Confidence 9999997765533 7999999999999999965221110000000 0 000000000
Q ss_pred HHHHHhccCCCchHHHHHHHHHHHHHHhcC
Q 042544 256 KALEFVGLAPKGSQRVQDFLEKAAEGLAAG 285 (305)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 285 (305)
-.-+.....+++.+++.+++..+|+..+..
T Consensus 206 VRgDGT~~YfF~~eeL~~~f~~agf~~~~~ 235 (264)
T KOG2361|consen 206 VRGDGTRAYFFTEEELDELFTKAGFEEVQL 235 (264)
T ss_pred EccCCceeeeccHHHHHHHHHhcccchhcc
Confidence 000112235567789999999999987663
No 121
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=99.34 E-value=9.8e-12 Score=104.89 Aligned_cols=161 Identities=25% Similarity=0.253 Sum_probs=110.3
Q ss_pred HHHHhhHHHHHHHHHhhhHHHHHhhcCCccccccCCCCccHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCCChHHHHHHh
Q 042544 41 EERKANYTDMVNKYYDLVTSFYEFGWGESFHFAPRWKGESLRESIKRHEHFLALQLGLKSGQKVLDVGCGIGGPLREIAQ 120 (305)
Q Consensus 41 ~~~~~~~~~~~~~~yd~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~ 120 (305)
.+......+.++.||+...+.=. +....+|.+..+.+..-++ ..|+. .-.+++..+||+|||-|..++.+-.
T Consensus 66 ~~~~~~~~~~Va~HYN~~~e~g~----e~Rq~S~Ii~lRnfNNwIK---s~LI~-~y~~~~~~~~~LgCGKGGDLlKw~k 137 (389)
T KOG1975|consen 66 MEANESKSSEVAEHYNERTEVGR----EKRQRSPIIFLRNFNNWIK---SVLIN-LYTKRGDDVLDLGCGKGGDLLKWDK 137 (389)
T ss_pred hhhccchhHHHHHHHHHHHHHhH----hhhccCceeehhhhhHHHH---HHHHH-HHhccccccceeccCCcccHhHhhh
Confidence 34556668899999998654321 1122344443333333222 22222 2345788999999999999888875
Q ss_pred hcCCeEEEEcCCHHHHHHHHHHHHhcCCCC-----CeEEEEcCCCC------CCCCCCCeeEEEecccccccCCh-hhhh
Q 042544 121 FSSTSVTGLNNNEYQITRGKELNRFAGVDK-----TCNFVKADFMK------MPFPDNSFDAVYAIEATCHAPDA-AEIE 188 (305)
Q Consensus 121 ~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~-----~~~~~~~d~~~------~~~~~~~fD~v~~~~~l~~~~~~-~~~~ 188 (305)
..-..++|+||+...++.|+++.+...... .+.|+.+|... +++++.+||+|-|.+++|+--.. +...
T Consensus 138 AgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~dp~fDivScQF~~HYaFetee~ar 217 (389)
T KOG1975|consen 138 AGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFKDPRFDIVSCQFAFHYAFETEESAR 217 (389)
T ss_pred hcccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCCCCCcceeeeeeeEeeeeccHHHHH
Confidence 445799999999999999999876442211 36889998864 34556669999999999986443 3322
Q ss_pred hcCCCCCcccHHHHHHHHHhCCceEEEec
Q 042544 189 IGDGLPDIRSTRKCLEALKQAGFEVIWEK 217 (305)
Q Consensus 189 ~~~~~~~~~~l~~~~~~L~~gG~~~i~~~ 217 (305)
.+++++.++|+|||+++-+.+
T Consensus 218 --------~~l~Nva~~LkpGG~FIgTiP 238 (389)
T KOG1975|consen 218 --------IALRNVAKCLKPGGVFIGTIP 238 (389)
T ss_pred --------HHHHHHHhhcCCCcEEEEecC
Confidence 269999999999999987654
No 122
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=99.34 E-value=8.3e-12 Score=104.97 Aligned_cols=108 Identities=19% Similarity=0.275 Sum_probs=84.7
Q ss_pred HcCCCCCCeEEEEcCCCChHHHHHHhh--cCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCC-C-----CCC
Q 042544 95 QLGLKSGQKVLDVGCGIGGPLREIAQF--SSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKM-P-----FPD 166 (305)
Q Consensus 95 ~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~-~-----~~~ 166 (305)
++...++.+|||+|||+|..+..++.. .+++|+++|+++.+++.|+++++..++.++++++.+|+.+. + .+.
T Consensus 63 l~~~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~ 142 (234)
T PLN02781 63 LVKIMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPK 142 (234)
T ss_pred HHHHhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCC
Confidence 344456789999999999999888853 35799999999999999999999999988899999999762 2 124
Q ss_pred CCeeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 167 NSFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 167 ~~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
++||+|++-.. .+... ..+..+.+.|+|||.+++..
T Consensus 143 ~~fD~VfiDa~-----k~~y~---------~~~~~~~~ll~~GG~ii~dn 178 (234)
T PLN02781 143 PEFDFAFVDAD-----KPNYV---------HFHEQLLKLVKVGGIIAFDN 178 (234)
T ss_pred CCCCEEEECCC-----HHHHH---------HHHHHHHHhcCCCeEEEEEc
Confidence 68999987422 11111 15888999999999877754
No 123
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=99.33 E-value=2e-11 Score=108.89 Aligned_cols=114 Identities=14% Similarity=0.240 Sum_probs=81.6
Q ss_pred CCCCeEEEEcCCCChHHHHHHh-hcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCC-CCCeeEEEecc
Q 042544 99 KSGQKVLDVGCGIGGPLREIAQ-FSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFP-DNSFDAVYAIE 176 (305)
Q Consensus 99 ~~~~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~fD~v~~~~ 176 (305)
+++.+|||+|||+|..+..++. .++.+|+|+|+|+.|++.|++++...+. +++++++|+.+..++ .++||+|+++-
T Consensus 250 ~~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~--rV~fi~gDl~e~~l~~~~~FDLIVSNP 327 (423)
T PRK14966 250 PENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGA--RVEFAHGSWFDTDMPSEGKWDIIVSNP 327 (423)
T ss_pred CCCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC--cEEEEEcchhccccccCCCccEEEECC
Confidence 4567999999999999999884 4678999999999999999999887654 699999998764332 45799999965
Q ss_pred cccccCChh------------hhhhcCCCCCc----ccHHHHHHHHHhCCceEEEe
Q 042544 177 ATCHAPDAA------------EIEIGDGLPDI----RSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 177 ~l~~~~~~~------------~~~~~~~~~~~----~~l~~~~~~L~~gG~~~i~~ 216 (305)
. +++..+ ...+..+-.-+ ..++.+.+.|+|||.+++..
T Consensus 328 P--YI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEi 381 (423)
T PRK14966 328 P--YIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEH 381 (423)
T ss_pred C--CCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 3 222111 00111111111 24666778999999987754
No 124
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=99.33 E-value=1.8e-11 Score=102.60 Aligned_cols=114 Identities=22% Similarity=0.372 Sum_probs=88.3
Q ss_pred HHHHHHcCCCCCCeEEEEcCCCChHHHHHHhh--cCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCC--
Q 042544 90 HFLALQLGLKSGQKVLDVGCGIGGPLREIAQF--SSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFP-- 165 (305)
Q Consensus 90 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~-- 165 (305)
.++...+++.||.+|||.|.|+|.++..|++. +.++|+.+|+.+...+.|+++++..++..++.+.+.|+..-.|+
T Consensus 30 ~~I~~~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~~ 109 (247)
T PF08704_consen 30 SYILMRLDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFDEE 109 (247)
T ss_dssp HHHHHHTT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--STT
T ss_pred HHHHHHcCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceeccccccc
Confidence 45667889999999999999999999999964 56899999999999999999999999988999999999653332
Q ss_pred -CCCeeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHH-HhCCceEEEeccC
Q 042544 166 -DNSFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEAL-KQAGFEVIWEKDL 219 (305)
Q Consensus 166 -~~~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L-~~gG~~~i~~~~~ 219 (305)
+..+|+|+. .+|+|-. .+..+.++| ++||++++..+++
T Consensus 110 ~~~~~DavfL-----Dlp~Pw~-----------~i~~~~~~L~~~gG~i~~fsP~i 149 (247)
T PF08704_consen 110 LESDFDAVFL-----DLPDPWE-----------AIPHAKRALKKPGGRICCFSPCI 149 (247)
T ss_dssp -TTSEEEEEE-----ESSSGGG-----------GHHHHHHHE-EEEEEEEEEESSH
T ss_pred ccCcccEEEE-----eCCCHHH-----------HHHHHHHHHhcCCceEEEECCCH
Confidence 367999975 6777754 588888888 7888887765443
No 125
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=99.33 E-value=1.1e-11 Score=99.26 Aligned_cols=84 Identities=19% Similarity=0.216 Sum_probs=70.3
Q ss_pred HHHHHcCCCCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCee
Q 042544 91 FLALQLGLKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFD 170 (305)
Q Consensus 91 ~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD 170 (305)
.+.+.+.+.++.+|||+|||+|.++..+++. +.+|+++|+++.+++.+++++.. ..+++++++|+.++++++.+||
T Consensus 4 ~i~~~~~~~~~~~vLEiG~G~G~lt~~l~~~-~~~v~~vE~~~~~~~~~~~~~~~---~~~v~ii~~D~~~~~~~~~~~d 79 (169)
T smart00650 4 KIVRAANLRPGDTVLEIGPGKGALTEELLER-AARVTAIEIDPRLAPRLREKFAA---ADNLTVIHGDALKFDLPKLQPY 79 (169)
T ss_pred HHHHhcCCCCcCEEEEECCCccHHHHHHHhc-CCeEEEEECCHHHHHHHHHHhcc---CCCEEEEECchhcCCccccCCC
Confidence 3444567778889999999999999999976 78999999999999999988753 2479999999999888777799
Q ss_pred EEEecccc
Q 042544 171 AVYAIEAT 178 (305)
Q Consensus 171 ~v~~~~~l 178 (305)
.|+++-..
T Consensus 80 ~vi~n~Py 87 (169)
T smart00650 80 KVVGNLPY 87 (169)
T ss_pred EEEECCCc
Confidence 99876433
No 126
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.33 E-value=5.3e-12 Score=117.42 Aligned_cols=116 Identities=16% Similarity=0.158 Sum_probs=82.8
Q ss_pred CCCeEEEEcCCCChHHHHHHh-hcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEEecccc
Q 042544 100 SGQKVLDVGCGIGGPLREIAQ-FSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIEAT 178 (305)
Q Consensus 100 ~~~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l 178 (305)
++.+|||+|||+|.++..++. .++.+|+++|+|+.+++.|++++...++.+++.++++|+.. ++++++||+|+++-..
T Consensus 138 ~~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~-~~~~~~fDlIvsNPPY 216 (506)
T PRK01544 138 KFLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFE-NIEKQKFDFIVSNPPY 216 (506)
T ss_pred CCCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhh-hCcCCCccEEEECCCC
Confidence 346899999999999999884 46789999999999999999999888877789999999865 2345689999985321
Q ss_pred c--------------ccCChhhhhhcCCCCC-cccHHHHHHHHHhCCceEEEe
Q 042544 179 C--------------HAPDAAEIEIGDGLPD-IRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 179 ~--------------~~~~~~~~~~~~~~~~-~~~l~~~~~~L~~gG~~~i~~ 216 (305)
. |-|......-..|+.. ..+++++.+.|+|||.+++..
T Consensus 217 i~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEi 269 (506)
T PRK01544 217 ISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEI 269 (506)
T ss_pred CCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEE
Confidence 1 1111110000001111 124677888999999988753
No 127
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=99.32 E-value=1.2e-10 Score=97.76 Aligned_cols=172 Identities=17% Similarity=0.210 Sum_probs=125.0
Q ss_pred CCCCeEEEEcCCCChHHHHHH-hhcC--CeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCC-C--CCCCeeEE
Q 042544 99 KSGQKVLDVGCGIGGPLREIA-QFSS--TSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMP-F--PDNSFDAV 172 (305)
Q Consensus 99 ~~~~~vLDiGcG~G~~~~~l~-~~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~-~--~~~~fD~v 172 (305)
...-+||||.||+|...+... ..+. .+|.-.|.|+..++..++.++..|+.+-++|.++|+.+.. + -+...+++
T Consensus 134 g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l~ 213 (311)
T PF12147_consen 134 GRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTLA 213 (311)
T ss_pred CCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCEE
Confidence 355799999999999998877 4443 6899999999999999999999999877799999998731 1 13457999
Q ss_pred EecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEeccCCCCCCCCCccccCCCcccccccccchhHHHHHH
Q 042544 173 YAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEKDLAPDSPLPWYLPLDTSHFSLSSFRLTSVGRFVTR 252 (305)
Q Consensus 173 ~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 252 (305)
+.++.++.++|.+.+. ..+..+.+++.|||+++... .||... +..+.+.+..
T Consensus 214 iVsGL~ElF~Dn~lv~--------~sl~gl~~al~pgG~lIyTg--------QPwHPQ------------le~IAr~Lts 265 (311)
T PF12147_consen 214 IVSGLYELFPDNDLVR--------RSLAGLARALEPGGYLIYTG--------QPWHPQ------------LEMIARVLTS 265 (311)
T ss_pred EEecchhhCCcHHHHH--------HHHHHHHHHhCCCcEEEEcC--------CCCCcc------------hHHHHHHHhc
Confidence 9999999999987653 26889999999999999853 345222 2222222211
Q ss_pred HHHHHHHHhccCCCchHHHHHHHHHHHHHHhcCCcccccccceEEEEEc
Q 042544 253 NMVKALEFVGLAPKGSQRVQDFLEKAAEGLAAGGRKEIFTPMYFFLARK 301 (305)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~arK 301 (305)
+.. -..|.+.-.+..++-.+.+.+||+-+.. ...-++.+.+.+|+|
T Consensus 266 Hr~--g~~WvMRrRsq~EmD~Lv~~aGF~K~~q-~ID~~GIFTVSlA~r 311 (311)
T PF12147_consen 266 HRD--GKAWVMRRRSQAEMDQLVEAAGFEKIDQ-RIDEWGIFTVSLARR 311 (311)
T ss_pred ccC--CCceEEEecCHHHHHHHHHHcCCchhhh-eeccCCceEEEeecC
Confidence 100 0122333345578999999999987763 455666677777775
No 128
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=99.32 E-value=1.3e-11 Score=113.76 Aligned_cols=126 Identities=21% Similarity=0.267 Sum_probs=91.0
Q ss_pred HHHHHcCCCCCCeEEEEcCCCChHHHHHHhh--cCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCC--CCC
Q 042544 91 FLALQLGLKSGQKVLDVGCGIGGPLREIAQF--SSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMP--FPD 166 (305)
Q Consensus 91 ~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~--~~~ 166 (305)
.+...+.+.++.+|||+|||+|..+..+++. +.++|+++|+++.+++.+++++...|+. +++++++|+..++ ++
T Consensus 241 lv~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~-~v~~~~~D~~~~~~~~~- 318 (444)
T PRK14902 241 LVAPALDPKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLT-NIETKALDARKVHEKFA- 318 (444)
T ss_pred HHHHHhCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEeCCcccccchhc-
Confidence 4444667788899999999999999999964 3679999999999999999999988875 4999999998753 33
Q ss_pred CCeeEEEecc------cccccCChhhhhhcCCCC-----CcccHHHHHHHHHhCCceEEEecc
Q 042544 167 NSFDAVYAIE------ATCHAPDAAEIEIGDGLP-----DIRSTRKCLEALKQAGFEVIWEKD 218 (305)
Q Consensus 167 ~~fD~v~~~~------~l~~~~~~~~~~~~~~~~-----~~~~l~~~~~~L~~gG~~~i~~~~ 218 (305)
++||+|++.- ++.+.|+.........+. ....+..+.++|+|||.++..+..
T Consensus 319 ~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs 381 (444)
T PRK14902 319 EKFDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCT 381 (444)
T ss_pred ccCCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCC
Confidence 6899999642 222223221000000000 012588899999999999987643
No 129
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=99.32 E-value=1.9e-11 Score=88.74 Aligned_cols=101 Identities=25% Similarity=0.362 Sum_probs=80.9
Q ss_pred eEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCC-CCCCeeEEEeccccccc
Q 042544 103 KVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPF-PDNSFDAVYAIEATCHA 181 (305)
Q Consensus 103 ~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~fD~v~~~~~l~~~ 181 (305)
+|||+|||+|..+..++.....+++++|+++.++..+++..... ...++.++..|+.+... ..++||+|++..++++.
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~ 79 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAAL-LADNVEVLKGDAEELPPEADESFDVIISDPPLHHL 79 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhcc-cccceEEEEcChhhhccccCCceEEEEEccceeeh
Confidence 58999999999999998745789999999999999888543322 33578999999988653 45789999999998874
Q ss_pred -CChhhhhhcCCCCCcccHHHHHHHHHhCCceEEE
Q 042544 182 -PDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIW 215 (305)
Q Consensus 182 -~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~ 215 (305)
..... .++.+.+.|+|+|.+++.
T Consensus 80 ~~~~~~-----------~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 80 VEDLAR-----------FLEEARRLLKPGGVLVLT 103 (107)
T ss_pred hhHHHH-----------HHHHHHHHcCCCCEEEEE
Confidence 33333 689999999999998875
No 130
>PRK00811 spermidine synthase; Provisional
Probab=99.29 E-value=1.9e-11 Score=105.69 Aligned_cols=110 Identities=24% Similarity=0.284 Sum_probs=82.0
Q ss_pred CCCCeEEEEcCCCChHHHHHHhhc-CCeEEEEcCCHHHHHHHHHHHHhcC----CCCCeEEEEcCCCCC-CCCCCCeeEE
Q 042544 99 KSGQKVLDVGCGIGGPLREIAQFS-STSVTGLNNNEYQITRGKELNRFAG----VDKTCNFVKADFMKM-PFPDNSFDAV 172 (305)
Q Consensus 99 ~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~----~~~~~~~~~~d~~~~-~~~~~~fD~v 172 (305)
+.+.+||+||||+|..+..+++.+ ..+|+++|+++.+++.|++.+...+ -.++++++.+|+..+ ...+++||+|
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvI 154 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVI 154 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEE
Confidence 356799999999999999998763 4699999999999999999876432 146899999998763 3346789999
Q ss_pred EecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEE
Q 042544 173 YAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIW 215 (305)
Q Consensus 173 ~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~ 215 (305)
++...-.+.+..... ...+++.+++.|+|||.+++.
T Consensus 155 i~D~~dp~~~~~~l~-------t~ef~~~~~~~L~~gGvlv~~ 190 (283)
T PRK00811 155 IVDSTDPVGPAEGLF-------TKEFYENCKRALKEDGIFVAQ 190 (283)
T ss_pred EECCCCCCCchhhhh-------HHHHHHHHHHhcCCCcEEEEe
Confidence 985432222221110 022688999999999998875
No 131
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=99.28 E-value=2.3e-11 Score=99.19 Aligned_cols=105 Identities=21% Similarity=0.243 Sum_probs=72.8
Q ss_pred HcCCCCCCeEEEEcCCCChHHHHHHhh--cCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCC--------C
Q 042544 95 QLGLKSGQKVLDVGCGIGGPLREIAQF--SSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMP--------F 164 (305)
Q Consensus 95 ~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~--------~ 164 (305)
...+.++.+|||+|||+|.++..++.. ...+|+++|+|+.+ .. .+++++++|+.+.+ +
T Consensus 27 ~~~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~-----------~~-~~i~~~~~d~~~~~~~~~l~~~~ 94 (188)
T TIGR00438 27 FKLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK-----------PI-ENVDFIRGDFTDEEVLNKIRERV 94 (188)
T ss_pred hcccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc-----------cC-CCceEEEeeCCChhHHHHHHHHh
Confidence 345678899999999999999998854 34689999999864 11 35788999987632 4
Q ss_pred CCCCeeEEEecccccc-----cCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 165 PDNSFDAVYAIEATCH-----APDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 165 ~~~~fD~v~~~~~l~~-----~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
++++||+|++....+. +........ ...++..+.++|+|||.+++..
T Consensus 95 ~~~~~D~V~~~~~~~~~g~~~~~~~~~~~~-----~~~~l~~~~~~LkpgG~lvi~~ 146 (188)
T TIGR00438 95 GDDKVDVVMSDAAPNISGYWDIDHLRSIDL-----VELALDIAKEVLKPKGNFVVKV 146 (188)
T ss_pred CCCCccEEEcCCCCCCCCCccccHHHHHHH-----HHHHHHHHHHHccCCCEEEEEE
Confidence 5678999998643211 111000000 0126899999999999999853
No 132
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=99.27 E-value=3.9e-11 Score=96.70 Aligned_cols=105 Identities=18% Similarity=0.208 Sum_probs=83.4
Q ss_pred eEEEEcCCCChHHHHHH-hhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCC--CCC------CCCeeEEE
Q 042544 103 KVLDVGCGIGGPLREIA-QFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKM--PFP------DNSFDAVY 173 (305)
Q Consensus 103 ~vLDiGcG~G~~~~~l~-~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~--~~~------~~~fD~v~ 173 (305)
+|||||||||..+.+++ ..|..+..-.|+++..+...++.+...+...-..-+..|+... +.. .++||+|+
T Consensus 28 ~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D~i~ 107 (204)
T PF06080_consen 28 RVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPESFDAIF 107 (204)
T ss_pred eEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCCcceee
Confidence 59999999999999999 4577888899999999888888777766643334456676653 322 45899999
Q ss_pred ecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 174 AIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 174 ~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
+.+++|-.+...... .++.+.++|++||.+++.-
T Consensus 108 ~~N~lHI~p~~~~~~---------lf~~a~~~L~~gG~L~~YG 141 (204)
T PF06080_consen 108 CINMLHISPWSAVEG---------LFAGAARLLKPGGLLFLYG 141 (204)
T ss_pred ehhHHHhcCHHHHHH---------HHHHHHHhCCCCCEEEEeC
Confidence 999999888765543 6899999999999999864
No 133
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=99.27 E-value=1.6e-11 Score=101.66 Aligned_cols=111 Identities=26% Similarity=0.403 Sum_probs=85.6
Q ss_pred cCCCCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHh-c------C----CCCCeEEEEcCCCCCCC
Q 042544 96 LGLKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRF-A------G----VDKTCNFVKADFMKMPF 164 (305)
Q Consensus 96 ~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~-~------~----~~~~~~~~~~d~~~~~~ 164 (305)
+...++.+||..|||.|.....|++. +.+|+|+|+|+..++.+.+.... . + ...++++.++|+..++.
T Consensus 33 l~~~~~~rvLvPgCG~g~D~~~La~~-G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~ 111 (218)
T PF05724_consen 33 LALKPGGRVLVPGCGKGYDMLWLAEQ-GHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPP 111 (218)
T ss_dssp HTTSTSEEEEETTTTTSCHHHHHHHT-TEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGG
T ss_pred cCCCCCCeEEEeCCCChHHHHHHHHC-CCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCCh
Confidence 45677889999999999999999987 88999999999999998543221 0 0 12367899999998764
Q ss_pred CC-CCeeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 165 PD-NSFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 165 ~~-~~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
.. ++||+|+=..+++-+|.....+ ..+.+.++|+|||.+++..
T Consensus 112 ~~~g~fD~iyDr~~l~Alpp~~R~~---------Ya~~l~~ll~p~g~~lLi~ 155 (218)
T PF05724_consen 112 EDVGKFDLIYDRTFLCALPPEMRER---------YAQQLASLLKPGGRGLLIT 155 (218)
T ss_dssp SCHHSEEEEEECSSTTTS-GGGHHH---------HHHHHHHCEEEEEEEEEEE
T ss_pred hhcCCceEEEEecccccCCHHHHHH---------HHHHHHHHhCCCCcEEEEE
Confidence 33 5799999999999998776543 7999999999999944433
No 134
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=99.26 E-value=4.8e-11 Score=109.89 Aligned_cols=92 Identities=25% Similarity=0.364 Sum_probs=74.8
Q ss_pred HHHHHHHHHHHHHHcCCCCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCC
Q 042544 82 RESIKRHEHFLALQLGLKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMK 161 (305)
Q Consensus 82 ~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~ 161 (305)
....+...+.+...+.+.++.+|||+|||+|.++..+++. ..+|+|+|+|+.|++.|++++...+.. +++++++|+.+
T Consensus 279 ~~~~e~l~~~vl~~l~~~~~~~VLDlgcGtG~~sl~la~~-~~~V~gvD~s~~al~~A~~n~~~~~~~-~v~~~~~d~~~ 356 (443)
T PRK13168 279 AQVNQKMVARALEWLDPQPGDRVLDLFCGLGNFTLPLARQ-AAEVVGVEGVEAMVERARENARRNGLD-NVTFYHANLEE 356 (443)
T ss_pred HHHHHHHHHHHHHHhcCCCCCEEEEEeccCCHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEEeChHH
Confidence 3334555566666777778899999999999999999976 589999999999999999999887764 69999999865
Q ss_pred C----CCCCCCeeEEEec
Q 042544 162 M----PFPDNSFDAVYAI 175 (305)
Q Consensus 162 ~----~~~~~~fD~v~~~ 175 (305)
. ++.+++||+|++.
T Consensus 357 ~l~~~~~~~~~fD~Vi~d 374 (443)
T PRK13168 357 DFTDQPWALGGFDKVLLD 374 (443)
T ss_pred hhhhhhhhcCCCCEEEEC
Confidence 2 2445689999864
No 135
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=99.26 E-value=3.5e-11 Score=98.14 Aligned_cols=110 Identities=21% Similarity=0.321 Sum_probs=82.8
Q ss_pred CCeEEEEcCCCChHHHHHH-hhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCC-CC--CCCCCeeEEEecc
Q 042544 101 GQKVLDVGCGIGGPLREIA-QFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMK-MP--FPDNSFDAVYAIE 176 (305)
Q Consensus 101 ~~~vLDiGcG~G~~~~~l~-~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~-~~--~~~~~fD~v~~~~ 176 (305)
...+||||||.|.++..+| .+|+..++|+|++...+..+.+++...++. |+.++++|+.. ++ ++++++|.|+..
T Consensus 18 ~~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~-Nv~~~~~da~~~l~~~~~~~~v~~i~i~- 95 (195)
T PF02390_consen 18 NPLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLK-NVRFLRGDARELLRRLFPPGSVDRIYIN- 95 (195)
T ss_dssp CEEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTS-SEEEEES-CTTHHHHHSTTTSEEEEEEE-
T ss_pred CCeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhccc-ceEEEEccHHHHHhhcccCCchheEEEe-
Confidence 3489999999999999999 568999999999999999999999888874 89999999987 22 457899999864
Q ss_pred cccccCChh--hhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 177 ATCHAPDAA--EIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 177 ~l~~~~~~~--~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
+|||- ......-+....++..+.++|+|||.+.+.+
T Consensus 96 ----FPDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~T 133 (195)
T PF02390_consen 96 ----FPDPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFAT 133 (195)
T ss_dssp ----S-----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred ----CCCCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEe
Confidence 44441 1111122333457999999999999998876
No 136
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=99.25 E-value=6.2e-11 Score=97.08 Aligned_cols=113 Identities=22% Similarity=0.297 Sum_probs=89.2
Q ss_pred HHHHHHcCCCCCCeEEEEcCCCChHHHHHHh-hc-CCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEE-cCCCC-CC-C
Q 042544 90 HFLALQLGLKSGQKVLDVGCGIGGPLREIAQ-FS-STSVTGLNNNEYQITRGKELNRFAGVDKTCNFVK-ADFMK-MP-F 164 (305)
Q Consensus 90 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~-~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~-~d~~~-~~-~ 164 (305)
.++..++...+..+|||||++.|..+..++. .+ +++++.+|+++++.+.|+++++..|+.+++.++. +|..+ +. .
T Consensus 49 ~~L~~L~~~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~ 128 (219)
T COG4122 49 ALLRLLARLSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRL 128 (219)
T ss_pred HHHHHHHHhcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhc
Confidence 4444455566788999999999999999994 34 6899999999999999999999999988899998 47765 22 3
Q ss_pred CCCCeeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 165 PDNSFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 165 ~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
..++||+|+.-..=... ..+++.+.++|+|||.+++..
T Consensus 129 ~~~~fDliFIDadK~~y--------------p~~le~~~~lLr~GGliv~DN 166 (219)
T COG4122 129 LDGSFDLVFIDADKADY--------------PEYLERALPLLRPGGLIVADN 166 (219)
T ss_pred cCCCccEEEEeCChhhC--------------HHHHHHHHHHhCCCcEEEEee
Confidence 46899999864221111 226999999999999888854
No 137
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=99.25 E-value=5e-11 Score=102.65 Aligned_cols=109 Identities=20% Similarity=0.299 Sum_probs=79.3
Q ss_pred eEEEEcCCCChHHHHHHh-hcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEEeccccccc
Q 042544 103 KVLDVGCGIGGPLREIAQ-FSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIEATCHA 181 (305)
Q Consensus 103 ~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~ 181 (305)
+|||+|||||..++.++. .+.++|+|+|+|+.+++.|++++...++ .++.+++.|+.. +.. ++||+|+++-- |+
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l-~~~~~~~~dlf~-~~~-~~fDlIVsNPP--Yi 187 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGL-VRVLVVQSDLFE-PLR-GKFDLIVSNPP--YI 187 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCC-ccEEEEeeeccc-ccC-CceeEEEeCCC--CC
Confidence 799999999999999994 4567999999999999999999999987 567777777765 233 48999998642 22
Q ss_pred CCh-------------hhhhhcC--CCCC-cccHHHHHHHHHhCCceEEEe
Q 042544 182 PDA-------------AEIEIGD--GLPD-IRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 182 ~~~-------------~~~~~~~--~~~~-~~~l~~~~~~L~~gG~~~i~~ 216 (305)
+.. ...-.+. |+.. .+++.++.+.|+|||++++..
T Consensus 188 p~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~ 238 (280)
T COG2890 188 PAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEI 238 (280)
T ss_pred CCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEE
Confidence 211 1000111 1111 135778889999999888864
No 138
>PHA03411 putative methyltransferase; Provisional
Probab=99.24 E-value=1.7e-10 Score=97.34 Aligned_cols=110 Identities=15% Similarity=0.125 Sum_probs=80.4
Q ss_pred CCCCeEEEEcCCCChHHHHHHhh-cCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEEeccc
Q 042544 99 KSGQKVLDVGCGIGGPLREIAQF-SSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIEA 177 (305)
Q Consensus 99 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~ 177 (305)
.+..+|||+|||+|.++..++.. ++.+|+|+|+|+.|++.++++. .+++++++|+..+.. +++||+|+++-.
T Consensus 63 ~~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~------~~v~~v~~D~~e~~~-~~kFDlIIsNPP 135 (279)
T PHA03411 63 HCTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLL------PEAEWITSDVFEFES-NEKFDVVISNPP 135 (279)
T ss_pred ccCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC------cCCEEEECchhhhcc-cCCCcEEEEcCC
Confidence 34569999999999999988754 3579999999999999998753 258899999988653 468999999988
Q ss_pred ccccCChhhhh---hcCC------CCCcccHHHHHHHHHhCCceEEE
Q 042544 178 TCHAPDAAEIE---IGDG------LPDIRSTRKCLEALKQAGFEVIW 215 (305)
Q Consensus 178 l~~~~~~~~~~---~~~~------~~~~~~l~~~~~~L~~gG~~~i~ 215 (305)
+.+.+..+... ...| ++-...+......|+|+|.+.+.
T Consensus 136 F~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~ 182 (279)
T PHA03411 136 FGKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFA 182 (279)
T ss_pred ccccCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEE
Confidence 88865543322 1111 11123566777888888855543
No 139
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=99.23 E-value=9.4e-11 Score=103.20 Aligned_cols=86 Identities=17% Similarity=0.119 Sum_probs=68.9
Q ss_pred HHHHHHHHcCCCCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCC-CC
Q 042544 88 HEHFLALQLGLKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPF-PD 166 (305)
Q Consensus 88 ~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~-~~ 166 (305)
..+.+..++...++.+|||+|||+|.++..++.. +.+|+|+|+|+.+++.|++++...++ .+++++++|+.++.. ..
T Consensus 161 l~~~v~~~l~~~~~~~VLDl~cG~G~~sl~la~~-~~~V~gvD~s~~av~~A~~n~~~~~l-~~v~~~~~D~~~~~~~~~ 238 (315)
T PRK03522 161 LYATARDWVRELPPRSMWDLFCGVGGFGLHCATP-GMQLTGIEISAEAIACAKQSAAELGL-TNVQFQALDSTQFATAQG 238 (315)
T ss_pred HHHHHHHHHHhcCCCEEEEccCCCCHHHHHHHhc-CCEEEEEeCCHHHHHHHHHHHHHcCC-CceEEEEcCHHHHHHhcC
Confidence 3333444444335689999999999999999985 68999999999999999999988887 579999999987532 23
Q ss_pred CCeeEEEec
Q 042544 167 NSFDAVYAI 175 (305)
Q Consensus 167 ~~fD~v~~~ 175 (305)
+.||+|++.
T Consensus 239 ~~~D~Vv~d 247 (315)
T PRK03522 239 EVPDLVLVN 247 (315)
T ss_pred CCCeEEEEC
Confidence 579999875
No 140
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=99.22 E-value=2.6e-10 Score=96.97 Aligned_cols=113 Identities=16% Similarity=0.192 Sum_probs=77.5
Q ss_pred CCCeEEEEcCCCChHHHHHHh-hcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCC-CC-CCCCeeEEEecc
Q 042544 100 SGQKVLDVGCGIGGPLREIAQ-FSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKM-PF-PDNSFDAVYAIE 176 (305)
Q Consensus 100 ~~~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~-~~-~~~~fD~v~~~~ 176 (305)
++.+|||+|||+|.++..++. .++.+|+|+|+|+.+++.|++++...+ ++++++|+.+. +- ..++||+|+++-
T Consensus 86 ~~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~----~~~~~~D~~~~l~~~~~~~fDlVv~NP 161 (251)
T TIGR03704 86 GTLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAG----GTVHEGDLYDALPTALRGRVDILAANA 161 (251)
T ss_pred CCCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC----CEEEEeechhhcchhcCCCEeEEEECC
Confidence 345899999999999999985 456799999999999999999987654 47899998752 21 135799999864
Q ss_pred ccc------ccCChh-----hhhhcCCCCC----cccHHHHHHHHHhCCceEEEe
Q 042544 177 ATC------HAPDAA-----EIEIGDGLPD----IRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 177 ~l~------~~~~~~-----~~~~~~~~~~----~~~l~~~~~~L~~gG~~~i~~ 216 (305)
-.. .++... ...+..+..- ..++..+.++|+|||.+++..
T Consensus 162 Py~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~ 216 (251)
T TIGR03704 162 PYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVET 216 (251)
T ss_pred CCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 321 111110 0011111110 125677779999999998864
No 141
>PLN02476 O-methyltransferase
Probab=99.19 E-value=1.3e-10 Score=98.98 Aligned_cols=110 Identities=15% Similarity=0.188 Sum_probs=86.3
Q ss_pred HHHcCCCCCCeEEEEcCCCChHHHHHHhh--cCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCC-CC-C----
Q 042544 93 ALQLGLKSGQKVLDVGCGIGGPLREIAQF--SSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMK-MP-F---- 164 (305)
Q Consensus 93 ~~~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~-~~-~---- 164 (305)
..++...+..+|||||||+|..++.++.. .+++|+++|.++...+.|+++++..|+.++++++.+|+.+ ++ +
T Consensus 111 ~~L~~~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~ 190 (278)
T PLN02476 111 AMLVQILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNG 190 (278)
T ss_pred HHHHHhcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcc
Confidence 33444556789999999999999999853 3578999999999999999999999998899999999876 22 1
Q ss_pred CCCCeeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 165 PDNSFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 165 ~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
.+++||+|+.-.. .... ...++.+.+.|+|||.+++..
T Consensus 191 ~~~~FD~VFIDa~-----K~~Y---------~~y~e~~l~lL~~GGvIV~DN 228 (278)
T PLN02476 191 EGSSYDFAFVDAD-----KRMY---------QDYFELLLQLVRVGGVIVMDN 228 (278)
T ss_pred cCCCCCEEEECCC-----HHHH---------HHHHHHHHHhcCCCcEEEEec
Confidence 1368999986432 1111 125888899999999988754
No 142
>PLN02366 spermidine synthase
Probab=99.16 E-value=2.4e-10 Score=99.46 Aligned_cols=110 Identities=25% Similarity=0.255 Sum_probs=81.4
Q ss_pred CCCCeEEEEcCCCChHHHHHHhhcC-CeEEEEcCCHHHHHHHHHHHHhcC--C-CCCeEEEEcCCCCC--CCCCCCeeEE
Q 042544 99 KSGQKVLDVGCGIGGPLREIAQFSS-TSVTGLNNNEYQITRGKELNRFAG--V-DKTCNFVKADFMKM--PFPDNSFDAV 172 (305)
Q Consensus 99 ~~~~~vLDiGcG~G~~~~~l~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~--~-~~~~~~~~~d~~~~--~~~~~~fD~v 172 (305)
++..+||+||||.|..+..+++++. .+|+.+|+++.+++.|++.+...+ . .++++++.+|+... ..++++||+|
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvI 169 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAI 169 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEE
Confidence 4567999999999999999997754 689999999999999999875432 2 45899999998652 1235689999
Q ss_pred EecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEE
Q 042544 173 YAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIW 215 (305)
Q Consensus 173 ~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~ 215 (305)
++-..-.+.+.... -...+++.++++|+|||.+++.
T Consensus 170 i~D~~dp~~~~~~L-------~t~ef~~~~~~~L~pgGvlv~q 205 (308)
T PLN02366 170 IVDSSDPVGPAQEL-------FEKPFFESVARALRPGGVVCTQ 205 (308)
T ss_pred EEcCCCCCCchhhh-------hHHHHHHHHHHhcCCCcEEEEC
Confidence 97543222221111 0123689999999999998764
No 143
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=99.15 E-value=7.4e-11 Score=95.32 Aligned_cols=113 Identities=21% Similarity=0.277 Sum_probs=86.1
Q ss_pred HcCCCCCCeEEEEcCCCChHHHHHHhhcCC-eEEEEcCCHHHHHHHHHHHHhcCC-CCCeEEEEcCCCCC--CCCCCCee
Q 042544 95 QLGLKSGQKVLDVGCGIGGPLREIAQFSST-SVTGLNNNEYQITRGKELNRFAGV-DKTCNFVKADFMKM--PFPDNSFD 170 (305)
Q Consensus 95 ~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~-~~~~~~~~~d~~~~--~~~~~~fD 170 (305)
...++.|.+|||.+.|-|+.++..++. ++ +|+.++.+|..++.|.-+--..++ ...++++.+|+.+. .|+|++||
T Consensus 129 ~V~~~~G~rVLDtC~GLGYtAi~a~~r-GA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sfD 207 (287)
T COG2521 129 LVKVKRGERVLDTCTGLGYTAIEALER-GAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDESFD 207 (287)
T ss_pred eeccccCCEeeeeccCccHHHHHHHHc-CCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcCCccccc
Confidence 345667999999999999999999887 55 999999999999988766444333 23689999999873 58899999
Q ss_pred EEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 171 AVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 171 ~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
+|+ | ||-...+...+-...+.++++|+|+|||.++-..
T Consensus 208 aIi------H--DPPRfS~AgeLYseefY~El~RiLkrgGrlFHYv 245 (287)
T COG2521 208 AII------H--DPPRFSLAGELYSEEFYRELYRILKRGGRLFHYV 245 (287)
T ss_pred eEe------e--CCCccchhhhHhHHHHHHHHHHHcCcCCcEEEEe
Confidence 997 3 2222222223444558999999999999988754
No 144
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=99.15 E-value=5.1e-10 Score=92.63 Aligned_cols=138 Identities=17% Similarity=0.206 Sum_probs=93.6
Q ss_pred cCCCCccHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCCChHHHHHHh-hcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCe
Q 042544 74 PRWKGESLRESIKRHEHFLALQLGLKSGQKVLDVGCGIGGPLREIAQ-FSSTSVTGLNNNEYQITRGKELNRFAGVDKTC 152 (305)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~ 152 (305)
|+|.++.+.+.+. +.+...-.. .+..+||+|||+|..+..++. .+.++|+++|.|+.++..|.+++.+.++.+++
T Consensus 126 PRpETEE~V~~Vi---d~~~~~~~~-~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i 201 (328)
T KOG2904|consen 126 PRPETEEWVEAVI---DALNNSEHS-KHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRI 201 (328)
T ss_pred cCccHHHHHHHHH---HHHhhhhhc-ccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCce
Confidence 6666655544332 222222222 345899999999999999984 46899999999999999999999999998899
Q ss_pred EEEEcCCCC-----CCCCCCCeeEEEecccccccCChhh-------------hhhcCCCC---C-cccHHHHHHHHHhCC
Q 042544 153 NFVKADFMK-----MPFPDNSFDAVYAIEATCHAPDAAE-------------IEIGDGLP---D-IRSTRKCLEALKQAG 210 (305)
Q Consensus 153 ~~~~~d~~~-----~~~~~~~fD~v~~~~~l~~~~~~~~-------------~~~~~~~~---~-~~~l~~~~~~L~~gG 210 (305)
.+++.+++. .+..++.+|+++++-- ++++.+. ..+..|.. + ..++.-+.|.|+|||
T Consensus 202 ~v~~~~me~d~~~~~~l~~~~~dllvsNPP--YI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg 279 (328)
T KOG2904|consen 202 EVIHNIMESDASDEHPLLEGKIDLLVSNPP--YIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGG 279 (328)
T ss_pred EEEecccccccccccccccCceeEEecCCC--cccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCC
Confidence 998766553 2345688999998643 2221110 01111111 1 124566779999999
Q ss_pred ceEEEec
Q 042544 211 FEVIWEK 217 (305)
Q Consensus 211 ~~~i~~~ 217 (305)
++.+...
T Consensus 280 ~~~le~~ 286 (328)
T KOG2904|consen 280 FEQLELV 286 (328)
T ss_pred eEEEEec
Confidence 9988653
No 145
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=99.14 E-value=7.4e-11 Score=96.66 Aligned_cols=118 Identities=18% Similarity=0.213 Sum_probs=87.1
Q ss_pred HHHHHHHHHHHHHHcCCCCCCeEEEEcCCCChHHHHHHhh--cCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCC
Q 042544 82 RESIKRHEHFLALQLGLKSGQKVLDVGCGIGGPLREIAQF--SSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADF 159 (305)
Q Consensus 82 ~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~ 159 (305)
......+...+.... ...+||||||++|..+..+++. .+++|+.+|+++...+.|++.++..|+.++++++.+|+
T Consensus 30 ~~~~g~lL~~l~~~~---~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda 106 (205)
T PF01596_consen 30 SPETGQLLQMLVRLT---RPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDA 106 (205)
T ss_dssp HHHHHHHHHHHHHHH---T-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-H
T ss_pred CHHHHHHHHHHHHhc---CCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEecc
Confidence 333334444444333 4579999999999999999953 36899999999999999999999999988999999999
Q ss_pred CC-CC-----CCCCCeeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 160 MK-MP-----FPDNSFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 160 ~~-~~-----~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
.+ ++ .+.++||+|+.-.. . ... ...++.+.++|+|||.+++..
T Consensus 107 ~~~l~~l~~~~~~~~fD~VFiDa~----K-~~y---------~~y~~~~~~ll~~ggvii~DN 155 (205)
T PF01596_consen 107 LEVLPELANDGEEGQFDFVFIDAD----K-RNY---------LEYFEKALPLLRPGGVIIADN 155 (205)
T ss_dssp HHHHHHHHHTTTTTSEEEEEEEST----G-GGH---------HHHHHHHHHHEEEEEEEEEET
T ss_pred HhhHHHHHhccCCCceeEEEEccc----c-cch---------hhHHHHHhhhccCCeEEEEcc
Confidence 75 22 12358999986432 1 111 125888889999999888854
No 146
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=99.14 E-value=2.4e-10 Score=110.70 Aligned_cols=115 Identities=11% Similarity=0.148 Sum_probs=81.4
Q ss_pred CCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCC-CCeEEEEcCCCCCC-CCCCCeeEEEeccc
Q 042544 100 SGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVD-KTCNFVKADFMKMP-FPDNSFDAVYAIEA 177 (305)
Q Consensus 100 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~-~~~~~~~~d~~~~~-~~~~~fD~v~~~~~ 177 (305)
++.+|||+|||||.+++.++.....+|+++|+|+.+++.|++++...++. .+++++++|+.++. -..++||+|++.--
T Consensus 538 ~g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilDPP 617 (702)
T PRK11783 538 KGKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFIDPP 617 (702)
T ss_pred CCCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEECCC
Confidence 57899999999999999999753357999999999999999999988875 57999999987631 11468999998532
Q ss_pred -ccccCCh-hhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 178 -TCHAPDA-AEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 178 -l~~~~~~-~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
+..-... ........+ ...+..+.++|+|||.+++..
T Consensus 618 ~f~~~~~~~~~~~~~~~y--~~l~~~a~~lL~~gG~l~~~~ 656 (702)
T PRK11783 618 TFSNSKRMEDSFDVQRDH--VALIKDAKRLLRPGGTLYFSN 656 (702)
T ss_pred CCCCCCccchhhhHHHHH--HHHHHHHHHHcCCCCEEEEEe
Confidence 1100000 000000000 114777889999999887754
No 147
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=99.13 E-value=1.8e-10 Score=99.01 Aligned_cols=108 Identities=17% Similarity=0.194 Sum_probs=82.6
Q ss_pred CCCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEEeccc
Q 042544 98 LKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIEA 177 (305)
Q Consensus 98 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~ 177 (305)
+-.+++|||+|||||.++...|+....+|+|+|-|.-+ +.|++.+..+++...++++++.++++.+|.++.|+|++-++
T Consensus 58 lf~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~ia-~~a~~iv~~N~~~~ii~vi~gkvEdi~LP~eKVDiIvSEWM 136 (346)
T KOG1499|consen 58 LFKDKTVLDVGCGTGILSMFAAKAGARKVYAVEASSIA-DFARKIVKDNGLEDVITVIKGKVEDIELPVEKVDIIVSEWM 136 (346)
T ss_pred hcCCCEEEEcCCCccHHHHHHHHhCcceEEEEechHHH-HHHHHHHHhcCccceEEEeecceEEEecCccceeEEeehhh
Confidence 45789999999999999999998766899999997655 89999999999988899999999987666788999999775
Q ss_pred ccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEE
Q 042544 178 TCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVI 214 (305)
Q Consensus 178 l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i 214 (305)
-..+--..... . .+-.=-++|+|||.++=
T Consensus 137 Gy~Ll~EsMld------s--Vl~ARdkwL~~~G~i~P 165 (346)
T KOG1499|consen 137 GYFLLYESMLD------S--VLYARDKWLKEGGLIYP 165 (346)
T ss_pred hHHHHHhhhhh------h--hhhhhhhccCCCceEcc
Confidence 33332111100 0 23333478999997643
No 148
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=99.13 E-value=5.8e-10 Score=91.04 Aligned_cols=78 Identities=13% Similarity=0.064 Sum_probs=63.2
Q ss_pred CCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCC-CCCCCCCeeEEEeccc
Q 042544 99 KSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMK-MPFPDNSFDAVYAIEA 177 (305)
Q Consensus 99 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~fD~v~~~~~ 177 (305)
.++.+|||+|||+|.++..++.....+|+++|+++.+++.++++++..+.. ++.++++|+.. ++...++||+|++.--
T Consensus 52 ~~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~~~~-~v~~~~~D~~~~l~~~~~~fDlV~~DPP 130 (199)
T PRK10909 52 IVDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATLKAG-NARVVNTNALSFLAQPGTPHNVVFVDPP 130 (199)
T ss_pred cCCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCC-cEEEEEchHHHHHhhcCCCceEEEECCC
Confidence 457899999999999999755433579999999999999999999888764 79999999876 2222457999997644
No 149
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=99.13 E-value=1.8e-10 Score=103.73 Aligned_cols=115 Identities=13% Similarity=0.230 Sum_probs=81.1
Q ss_pred CCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCC-CCeEEEEcCCCCCC--C--CCCCeeEEE
Q 042544 99 KSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVD-KTCNFVKADFMKMP--F--PDNSFDAVY 173 (305)
Q Consensus 99 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~-~~~~~~~~d~~~~~--~--~~~~fD~v~ 173 (305)
.++.+|||+|||||.+++..+.....+|+++|+|+.+++.|++++...++. .+++++++|+.+.. + ..++||+|+
T Consensus 219 ~~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVi 298 (396)
T PRK15128 219 VENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIV 298 (396)
T ss_pred cCCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEE
Confidence 367899999999999998876543459999999999999999999988875 47999999997631 1 246899999
Q ss_pred ecccccccCChhhh-hhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 174 AIEATCHAPDAAEI-EIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 174 ~~~~l~~~~~~~~~-~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
+.-.. ........ ....++ ...+..+.++|+|||.++...
T Consensus 299 lDPP~-f~~~k~~l~~~~~~y--~~l~~~a~~lLk~gG~lv~~s 339 (396)
T PRK15128 299 MDPPK-FVENKSQLMGACRGY--KDINMLAIQLLNPGGILLTFS 339 (396)
T ss_pred ECCCC-CCCChHHHHHHHHHH--HHHHHHHHHHcCCCeEEEEEe
Confidence 75332 11111110 000000 013456789999999988754
No 150
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=99.13 E-value=6e-10 Score=95.96 Aligned_cols=109 Identities=22% Similarity=0.221 Sum_probs=78.6
Q ss_pred CCCeEEEEcCCCChHHHHHHhhc-CCeEEEEcCCHHHHHHHHHHHHhcCC---CCCeEEEEcCCCC-CCCCCCCeeEEEe
Q 042544 100 SGQKVLDVGCGIGGPLREIAQFS-STSVTGLNNNEYQITRGKELNRFAGV---DKTCNFVKADFMK-MPFPDNSFDAVYA 174 (305)
Q Consensus 100 ~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~---~~~~~~~~~d~~~-~~~~~~~fD~v~~ 174 (305)
.+.+||+||||+|..+..+++.+ ..+++++|+++.+++.+++.+...+. .++++++.+|+.. +...+++||+|++
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi~ 151 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVIIV 151 (270)
T ss_pred CCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEEE
Confidence 44599999999999999888654 57899999999999999997654321 3478888888765 2222478999998
Q ss_pred cccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEE
Q 042544 175 IEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIW 215 (305)
Q Consensus 175 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~ 215 (305)
.......+..... ...+++.+.+.|+|||.+++.
T Consensus 152 D~~~~~~~~~~l~-------~~ef~~~~~~~L~pgG~lv~~ 185 (270)
T TIGR00417 152 DSTDPVGPAETLF-------TKEFYELLKKALNEDGIFVAQ 185 (270)
T ss_pred eCCCCCCcccchh-------HHHHHHHHHHHhCCCcEEEEc
Confidence 5442221211100 012688999999999998885
No 151
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=99.12 E-value=4.6e-10 Score=103.23 Aligned_cols=90 Identities=17% Similarity=0.275 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHHcCCCCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCC-
Q 042544 84 SIKRHEHFLALQLGLKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKM- 162 (305)
Q Consensus 84 ~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~- 162 (305)
..+...+.+...+.+.++.+|||+|||+|.++..++.. ..+|+|+|+++.+++.|++++...++ .+++++++|+.+.
T Consensus 276 ~~~~l~~~~~~~l~~~~~~~vLDl~cG~G~~sl~la~~-~~~V~~vE~~~~av~~a~~n~~~~~~-~nv~~~~~d~~~~l 353 (431)
T TIGR00479 276 QNEKLVDRALEALELQGEELVVDAYCGVGTFTLPLAKQ-AKSVVGIEVVPESVEKAQQNAELNGI-ANVEFLAGTLETVL 353 (431)
T ss_pred HHHHHHHHHHHHhccCCCCEEEEcCCCcCHHHHHHHHh-CCEEEEEEcCHHHHHHHHHHHHHhCC-CceEEEeCCHHHHH
Confidence 34444555566667777889999999999999999975 57999999999999999999988776 4799999998752
Q ss_pred ---CCCCCCeeEEEec
Q 042544 163 ---PFPDNSFDAVYAI 175 (305)
Q Consensus 163 ---~~~~~~fD~v~~~ 175 (305)
++.+++||+|++.
T Consensus 354 ~~~~~~~~~~D~vi~d 369 (431)
T TIGR00479 354 PKQPWAGQIPDVLLLD 369 (431)
T ss_pred HHHHhcCCCCCEEEEC
Confidence 2334679999853
No 152
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=99.12 E-value=7.4e-10 Score=91.87 Aligned_cols=110 Identities=20% Similarity=0.261 Sum_probs=86.5
Q ss_pred CCeEEEEcCCCChHHHHHH-hhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCC---CCCCCCeeEEEecc
Q 042544 101 GQKVLDVGCGIGGPLREIA-QFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKM---PFPDNSFDAVYAIE 176 (305)
Q Consensus 101 ~~~vLDiGcG~G~~~~~l~-~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~---~~~~~~fD~v~~~~ 176 (305)
...+||||||.|.++..+| +.|...++|||+....+..|.+++...++. |+.+++.|+..+ -+++++.|-|+..
T Consensus 49 ~pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~-Nlri~~~DA~~~l~~~~~~~sl~~I~i~- 126 (227)
T COG0220 49 APIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLK-NLRLLCGDAVEVLDYLIPDGSLDKIYIN- 126 (227)
T ss_pred CcEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCC-cEEEEcCCHHHHHHhcCCCCCeeEEEEE-
Confidence 3589999999999999999 568999999999999999999999998885 899999999862 2456699999875
Q ss_pred cccccCChhh--hhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 177 ATCHAPDAAE--IEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 177 ~l~~~~~~~~--~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
+|||-. ......+....+++.+.+.|+|||.+.+.+
T Consensus 127 ----FPDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aT 164 (227)
T COG0220 127 ----FPDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFAT 164 (227)
T ss_pred ----CCCCCCCccccccccCCHHHHHHHHHHccCCCEEEEEe
Confidence 444410 000011222347999999999999999876
No 153
>PHA03412 putative methyltransferase; Provisional
Probab=99.12 E-value=2e-10 Score=94.82 Aligned_cols=107 Identities=16% Similarity=0.217 Sum_probs=73.4
Q ss_pred CCCeEEEEcCCCChHHHHHHhh----cCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEEec
Q 042544 100 SGQKVLDVGCGIGGPLREIAQF----SSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAI 175 (305)
Q Consensus 100 ~~~~vLDiGcG~G~~~~~l~~~----~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~ 175 (305)
.+.+|||+|||+|.++..+++. ...+|+++|+++.+++.|+++. .++.++++|+...++ +++||+|+++
T Consensus 49 ~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~------~~~~~~~~D~~~~~~-~~~FDlIIsN 121 (241)
T PHA03412 49 TSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIV------PEATWINADALTTEF-DTLFDMAISN 121 (241)
T ss_pred CCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhc------cCCEEEEcchhcccc-cCCccEEEEC
Confidence 3679999999999999998853 3469999999999999999764 247899999987655 5689999997
Q ss_pred ccccccCChhhhh-hcCCCCCcccHHHHHHHHHhCCceEE
Q 042544 176 EATCHAPDAAEIE-IGDGLPDIRSTRKCLEALKQAGFEVI 214 (305)
Q Consensus 176 ~~l~~~~~~~~~~-~~~~~~~~~~l~~~~~~L~~gG~~~i 214 (305)
--+.-........ .........++..+.+++++|+ +++
T Consensus 122 PPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~-~IL 160 (241)
T PHA03412 122 PPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGT-FII 160 (241)
T ss_pred CCCCCccccccCCcccccHHHHHHHHHHHHHcCCCE-EEe
Confidence 6544332111000 0000111236777778556555 444
No 154
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=99.11 E-value=1.1e-09 Score=87.91 Aligned_cols=107 Identities=17% Similarity=0.194 Sum_probs=67.1
Q ss_pred cCCCCccHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeE
Q 042544 74 PRWKGESLRESIKRHEHFLALQLGLKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCN 153 (305)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~ 153 (305)
..|...++...++.. ...+++..|.|+|||.+.++..+.. ..+|+..|+-. .+-.
T Consensus 53 ~~WP~nPvd~iI~~l-------~~~~~~~viaD~GCGdA~la~~~~~--~~~V~SfDLva----------------~n~~ 107 (219)
T PF05148_consen 53 KKWPVNPVDVIIEWL-------KKRPKSLVIADFGCGDAKLAKAVPN--KHKVHSFDLVA----------------PNPR 107 (219)
T ss_dssp CTSSS-HHHHHHHHH-------CTS-TTS-EEEES-TT-HHHHH--S-----EEEEESS-----------------SSTT
T ss_pred hcCCCCcHHHHHHHH-------HhcCCCEEEEECCCchHHHHHhccc--CceEEEeeccC----------------CCCC
Confidence 468777766555432 2345567999999999998866542 46899999843 2335
Q ss_pred EEEcCCCCCCCCCCCeeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEec
Q 042544 154 FVKADFMKMPFPDNSFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEK 217 (305)
Q Consensus 154 ~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~~ 217 (305)
++.+|+...|+++++.|+++++.+|..-.-.+ ++.|+.|+|||||.+.|.+.
T Consensus 108 Vtacdia~vPL~~~svDv~VfcLSLMGTn~~~------------fi~EA~RvLK~~G~L~IAEV 159 (219)
T PF05148_consen 108 VTACDIANVPLEDESVDVAVFCLSLMGTNWPD------------FIREANRVLKPGGILKIAEV 159 (219)
T ss_dssp EEES-TTS-S--TT-EEEEEEES---SS-HHH------------HHHHHHHHEEEEEEEEEEEE
T ss_pred EEEecCccCcCCCCceeEEEEEhhhhCCCcHH------------HHHHHHheeccCcEEEEEEe
Confidence 88899999999999999999988766433332 59999999999999999873
No 155
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=99.10 E-value=7.7e-10 Score=94.63 Aligned_cols=84 Identities=17% Similarity=0.192 Sum_probs=69.2
Q ss_pred HHHHHHHcCCCCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCC
Q 042544 89 EHFLALQLGLKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNS 168 (305)
Q Consensus 89 ~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 168 (305)
.+.+...+++.++.+|||||||+|.++..+++. +.+|+++|+++.+++.+++++.. .++++++++|+..++++ .
T Consensus 18 ~~~iv~~~~~~~~~~VLEIG~G~G~lt~~L~~~-~~~v~~vEid~~~~~~l~~~~~~---~~~v~ii~~D~~~~~~~--~ 91 (258)
T PRK14896 18 VDRIVEYAEDTDGDPVLEIGPGKGALTDELAKR-AKKVYAIELDPRLAEFLRDDEIA---AGNVEIIEGDALKVDLP--E 91 (258)
T ss_pred HHHHHHhcCCCCcCeEEEEeCccCHHHHHHHHh-CCEEEEEECCHHHHHHHHHHhcc---CCCEEEEEeccccCCch--h
Confidence 344555667778899999999999999999976 67999999999999999987643 24799999999987765 4
Q ss_pred eeEEEecccc
Q 042544 169 FDAVYAIEAT 178 (305)
Q Consensus 169 fD~v~~~~~l 178 (305)
||.|+++...
T Consensus 92 ~d~Vv~NlPy 101 (258)
T PRK14896 92 FNKVVSNLPY 101 (258)
T ss_pred ceEEEEcCCc
Confidence 8999886543
No 156
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=99.09 E-value=1.4e-09 Score=85.68 Aligned_cols=76 Identities=22% Similarity=0.254 Sum_probs=63.3
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEEecc
Q 042544 97 GLKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIE 176 (305)
Q Consensus 97 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~ 176 (305)
+.-.|.+|+|+|||||.+++..+-....+|+|+|+++.+++.+++++... ..++.|+++|+.++. ..+|.|+.+-
T Consensus 42 g~l~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~l--~g~v~f~~~dv~~~~---~~~dtvimNP 116 (198)
T COG2263 42 GDLEGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEEL--LGDVEFVVADVSDFR---GKFDTVIMNP 116 (198)
T ss_pred CCcCCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHhh--CCceEEEEcchhhcC---CccceEEECC
Confidence 33467899999999999999988765589999999999999999998873 457999999998863 5678777654
Q ss_pred c
Q 042544 177 A 177 (305)
Q Consensus 177 ~ 177 (305)
-
T Consensus 117 P 117 (198)
T COG2263 117 P 117 (198)
T ss_pred C
Confidence 3
No 157
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=99.09 E-value=5.6e-10 Score=96.21 Aligned_cols=82 Identities=17% Similarity=0.165 Sum_probs=65.8
Q ss_pred HHHHHHcCCCCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCe
Q 042544 90 HFLALQLGLKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSF 169 (305)
Q Consensus 90 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~f 169 (305)
+.+...+.+.++.+|||||||+|.++..+++. +.+|+|+|+++.|++.++++... ++++++++|+..+++++-.+
T Consensus 32 ~~i~~~l~~~~~~~VLEiG~G~G~lt~~L~~~-~~~v~avE~d~~~~~~~~~~~~~----~~v~~i~~D~~~~~~~~~~~ 106 (272)
T PRK00274 32 DKIVDAAGPQPGDNVLEIGPGLGALTEPLLER-AAKVTAVEIDRDLAPILAETFAE----DNLTIIEGDALKVDLSELQP 106 (272)
T ss_pred HHHHHhcCCCCcCeEEEeCCCccHHHHHHHHh-CCcEEEEECCHHHHHHHHHhhcc----CceEEEEChhhcCCHHHcCc
Confidence 44555667778899999999999999999976 45999999999999999886532 47999999999887654224
Q ss_pred eEEEecc
Q 042544 170 DAVYAIE 176 (305)
Q Consensus 170 D~v~~~~ 176 (305)
|.|+++-
T Consensus 107 ~~vv~Nl 113 (272)
T PRK00274 107 LKVVANL 113 (272)
T ss_pred ceEEEeC
Confidence 7777653
No 158
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=99.09 E-value=8e-10 Score=95.75 Aligned_cols=84 Identities=18% Similarity=0.257 Sum_probs=70.2
Q ss_pred HHHHHHHcCCCCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCC
Q 042544 89 EHFLALQLGLKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNS 168 (305)
Q Consensus 89 ~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 168 (305)
.+.+...+.+.++.+|||||||+|.++..+++. +.+|+++|+++.+++.+++++...+..++++++++|+...++ ..
T Consensus 25 ~~~Iv~~~~~~~~~~VLEIG~G~G~LT~~Ll~~-~~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~~--~~ 101 (294)
T PTZ00338 25 LDKIVEKAAIKPTDTVLEIGPGTGNLTEKLLQL-AKKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTEF--PY 101 (294)
T ss_pred HHHHHHhcCCCCcCEEEEecCchHHHHHHHHHh-CCcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhcc--cc
Confidence 345555677888899999999999999999875 678999999999999999988766655689999999987665 35
Q ss_pred eeEEEec
Q 042544 169 FDAVYAI 175 (305)
Q Consensus 169 fD~v~~~ 175 (305)
||.|+++
T Consensus 102 ~d~VvaN 108 (294)
T PTZ00338 102 FDVCVAN 108 (294)
T ss_pred cCEEEec
Confidence 8988864
No 159
>PLN02672 methionine S-methyltransferase
Probab=99.08 E-value=6.5e-10 Score=110.03 Aligned_cols=76 Identities=18% Similarity=0.234 Sum_probs=61.5
Q ss_pred CCeEEEEcCCCChHHHHHHh-hcCCeEEEEcCCHHHHHHHHHHHHhcCC---------------CCCeEEEEcCCCCCCC
Q 042544 101 GQKVLDVGCGIGGPLREIAQ-FSSTSVTGLNNNEYQITRGKELNRFAGV---------------DKTCNFVKADFMKMPF 164 (305)
Q Consensus 101 ~~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~---------------~~~~~~~~~d~~~~~~ 164 (305)
+.+|||+|||+|..++.++. .+..+|+|+|+|+.+++.|++++...++ .++++++++|+.+..-
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~ 198 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCR 198 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhcc
Confidence 46899999999999999995 4568999999999999999999987542 2469999999976321
Q ss_pred C-CCCeeEEEecc
Q 042544 165 P-DNSFDAVYAIE 176 (305)
Q Consensus 165 ~-~~~fD~v~~~~ 176 (305)
. ...||+|+++-
T Consensus 199 ~~~~~fDlIVSNP 211 (1082)
T PLN02672 199 DNNIELDRIVGCI 211 (1082)
T ss_pred ccCCceEEEEECC
Confidence 1 13699999854
No 160
>PRK01581 speE spermidine synthase; Validated
Probab=99.07 E-value=5.7e-10 Score=97.77 Aligned_cols=112 Identities=20% Similarity=0.189 Sum_probs=79.1
Q ss_pred CCCCeEEEEcCCCChHHHHHHhhc-CCeEEEEcCCHHHHHHHHHH--HH---hcC-CCCCeEEEEcCCCC-CCCCCCCee
Q 042544 99 KSGQKVLDVGCGIGGPLREIAQFS-STSVTGLNNNEYQITRGKEL--NR---FAG-VDKTCNFVKADFMK-MPFPDNSFD 170 (305)
Q Consensus 99 ~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~l~~a~~~--~~---~~~-~~~~~~~~~~d~~~-~~~~~~~fD 170 (305)
....+||+||||+|..+..+.+.+ ..+|++||+++.+++.|++. +. ... ..++++++.+|+.+ +.-.++.||
T Consensus 149 ~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~YD 228 (374)
T PRK01581 149 IDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLYD 228 (374)
T ss_pred CCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCcc
Confidence 345699999999999998888764 47999999999999999962 11 111 24689999999987 333457899
Q ss_pred EEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 171 AVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 171 ~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
+|++.. +++... ....+-...+++.+++.|+|||.+++..
T Consensus 229 VIIvDl-----~DP~~~-~~~~LyT~EFy~~~~~~LkPgGV~V~Qs 268 (374)
T PRK01581 229 VIIIDF-----PDPATE-LLSTLYTSELFARIATFLTEDGAFVCQS 268 (374)
T ss_pred EEEEcC-----CCcccc-chhhhhHHHHHHHHHHhcCCCcEEEEec
Confidence 999763 222100 0000111236899999999999988863
No 161
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=99.06 E-value=9.1e-10 Score=95.29 Aligned_cols=119 Identities=24% Similarity=0.280 Sum_probs=92.1
Q ss_pred HHHHHHHHcCCCCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEc-CCCCCCCCC
Q 042544 88 HEHFLALQLGLKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKA-DFMKMPFPD 166 (305)
Q Consensus 88 ~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~-d~~~~~~~~ 166 (305)
....+..+..+.+|..|||-=||||.++....-. |++++|.|++..|+.-|+.+++..++.+ ..+... |+..+|+++
T Consensus 185 lAR~mVNLa~v~~G~~vlDPFcGTGgiLiEagl~-G~~viG~Did~~mv~gak~Nl~~y~i~~-~~~~~~~Da~~lpl~~ 262 (347)
T COG1041 185 LARAMVNLARVKRGELVLDPFCGTGGILIEAGLM-GARVIGSDIDERMVRGAKINLEYYGIED-YPVLKVLDATNLPLRD 262 (347)
T ss_pred HHHHHHHHhccccCCEeecCcCCccHHHHhhhhc-CceEeecchHHHHHhhhhhhhhhhCcCc-eeEEEecccccCCCCC
Confidence 3345566778899999999999999999998765 9999999999999999999999988654 444444 999999998
Q ss_pred CCeeEEEecccccc---cCCh---hhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 167 NSFDAVYAIEATCH---APDA---AEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 167 ~~fD~v~~~~~l~~---~~~~---~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
+++|+|++---..- .... ... ..+++.+.++|++||++++..
T Consensus 263 ~~vdaIatDPPYGrst~~~~~~l~~Ly--------~~~le~~~evLk~gG~~vf~~ 310 (347)
T COG1041 263 NSVDAIATDPPYGRSTKIKGEGLDELY--------EEALESASEVLKPGGRIVFAA 310 (347)
T ss_pred CccceEEecCCCCcccccccccHHHHH--------HHHHHHHHHHhhcCcEEEEec
Confidence 88999987321110 0000 000 126899999999999999875
No 162
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=99.05 E-value=1.7e-09 Score=97.33 Aligned_cols=118 Identities=14% Similarity=0.043 Sum_probs=81.6
Q ss_pred HHHHHHHHHHHHHcCCCCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCC
Q 042544 83 ESIKRHEHFLALQLGLKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKM 162 (305)
Q Consensus 83 ~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~ 162 (305)
...+.....+...+...++.+|||+|||+|.+++.++.. +.+|+|+|+++.+++.|+++++..++. +++++++|+.++
T Consensus 216 ~~~~~l~~~~~~~l~~~~~~~vLDL~cG~G~~~l~la~~-~~~v~~vE~~~~av~~a~~N~~~~~~~-~~~~~~~d~~~~ 293 (374)
T TIGR02085 216 KVAAQLYATARQWVREIPVTQMWDLFCGVGGFGLHCAGP-DTQLTGIEIESEAIACAQQSAQMLGLD-NLSFAALDSAKF 293 (374)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEccCCccHHHHHHhhc-CCeEEEEECCHHHHHHHHHHHHHcCCC-cEEEEECCHHHH
Confidence 333334344444444345679999999999999999965 689999999999999999999888874 799999999763
Q ss_pred CC-CCCCeeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 163 PF-PDNSFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 163 ~~-~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
.. ..++||+|++.-.-..+.. .+++.+. .++|++.++++.
T Consensus 294 ~~~~~~~~D~vi~DPPr~G~~~-------------~~l~~l~-~~~p~~ivyvsc 334 (374)
T TIGR02085 294 ATAQMSAPELVLVNPPRRGIGK-------------ELCDYLS-QMAPKFILYSSC 334 (374)
T ss_pred HHhcCCCCCEEEECCCCCCCcH-------------HHHHHHH-hcCCCeEEEEEe
Confidence 21 1245999987532211110 1234443 467888777754
No 163
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=99.04 E-value=1.3e-09 Score=90.40 Aligned_cols=95 Identities=19% Similarity=0.196 Sum_probs=75.2
Q ss_pred CCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEEeccccc
Q 042544 100 SGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIEATC 179 (305)
Q Consensus 100 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~ 179 (305)
...++||||+|.|..+..++.. -.+|++.|.|+.|....++ .| .+++ +..++.-.+.+||+|.|.+++.
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~-f~~v~aTE~S~~Mr~rL~~----kg----~~vl--~~~~w~~~~~~fDvIscLNvLD 162 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPL-FKEVYATEASPPMRWRLSK----KG----FTVL--DIDDWQQTDFKFDVISCLNVLD 162 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhh-cceEEeecCCHHHHHHHHh----CC----CeEE--ehhhhhccCCceEEEeehhhhh
Confidence 4568999999999999999865 4689999999999766554 23 3333 3333333356899999999999
Q ss_pred ccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 180 HAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
.-.+|.. .++.+++.|+|+|++++..
T Consensus 163 Rc~~P~~-----------LL~~i~~~l~p~G~lilAv 188 (265)
T PF05219_consen 163 RCDRPLT-----------LLRDIRRALKPNGRLILAV 188 (265)
T ss_pred ccCCHHH-----------HHHHHHHHhCCCCEEEEEE
Confidence 8888866 5999999999999998864
No 164
>PRK03612 spermidine synthase; Provisional
Probab=99.03 E-value=6e-10 Score=104.33 Aligned_cols=112 Identities=20% Similarity=0.210 Sum_probs=80.9
Q ss_pred CCCCeEEEEcCCCChHHHHHHhhcC-CeEEEEcCCHHHHHHHHHH--HHhc---CC-CCCeEEEEcCCCCC-CCCCCCee
Q 042544 99 KSGQKVLDVGCGIGGPLREIAQFSS-TSVTGLNNNEYQITRGKEL--NRFA---GV-DKTCNFVKADFMKM-PFPDNSFD 170 (305)
Q Consensus 99 ~~~~~vLDiGcG~G~~~~~l~~~~~-~~v~gvD~s~~~l~~a~~~--~~~~---~~-~~~~~~~~~d~~~~-~~~~~~fD 170 (305)
+++.+|||||||+|..+..+++++. .+|+++|+++.+++.++++ .... .. +++++++.+|+.+. ...+++||
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fD 375 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFD 375 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCC
Confidence 4567999999999999999987655 7999999999999999983 2221 11 35799999999873 22357899
Q ss_pred EEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 171 AVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 171 ~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
+|++.......+.... +-...+++.+++.|+|||.+++..
T Consensus 376 vIi~D~~~~~~~~~~~------L~t~ef~~~~~~~L~pgG~lv~~~ 415 (521)
T PRK03612 376 VIIVDLPDPSNPALGK------LYSVEFYRLLKRRLAPDGLLVVQS 415 (521)
T ss_pred EEEEeCCCCCCcchhc------cchHHHHHHHHHhcCCCeEEEEec
Confidence 9998643222221110 011226889999999999988854
No 165
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=99.03 E-value=1.7e-09 Score=88.10 Aligned_cols=105 Identities=23% Similarity=0.311 Sum_probs=73.0
Q ss_pred CCCCeEEEEcCCCChHHHHHHhh-cCCeEEEEcCCHHHHHHHHHHHHhcCC-----C-----------------------
Q 042544 99 KSGQKVLDVGCGIGGPLREIAQF-SSTSVTGLNNNEYQITRGKELNRFAGV-----D----------------------- 149 (305)
Q Consensus 99 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~-----~----------------------- 149 (305)
..+..+|||||..|.++..+++. ....|+|+||++..+..|++.++.... .
T Consensus 57 f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~a 136 (288)
T KOG2899|consen 57 FEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADRA 136 (288)
T ss_pred cCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCcccccccccccccccccccc
Confidence 34678999999999999999964 346899999999999999998653210 0
Q ss_pred -------------CCeEEEEcCCCCCCCCCCCeeEEEeccc--ccccC--ChhhhhhcCCCCCcccHHHHHHHHHhCCce
Q 042544 150 -------------KTCNFVKADFMKMPFPDNSFDAVYAIEA--TCHAP--DAAEIEIGDGLPDIRSTRKCLEALKQAGFE 212 (305)
Q Consensus 150 -------------~~~~~~~~d~~~~~~~~~~fD~v~~~~~--l~~~~--~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~ 212 (305)
.+..+...|+. .+....||+|+|..+ .-|+. |.... ++++++.++|.|||++
T Consensus 137 ~t~~~p~n~~f~~~n~vle~~dfl--~~~~~~fDiIlcLSiTkWIHLNwgD~GL~---------~ff~kis~ll~pgGiL 205 (288)
T KOG2899|consen 137 FTTDFPDNVWFQKENYVLESDDFL--DMIQPEFDIILCLSITKWIHLNWGDDGLR---------RFFRKISSLLHPGGIL 205 (288)
T ss_pred ccccCCcchhcccccEEEecchhh--hhccccccEEEEEEeeeeEecccccHHHH---------HHHHHHHHhhCcCcEE
Confidence 01111111222 233467999998765 33443 22232 2799999999999999
Q ss_pred EE
Q 042544 213 VI 214 (305)
Q Consensus 213 ~i 214 (305)
++
T Consensus 206 vv 207 (288)
T KOG2899|consen 206 VV 207 (288)
T ss_pred EE
Confidence 98
No 166
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=99.02 E-value=7.1e-10 Score=95.22 Aligned_cols=107 Identities=12% Similarity=0.134 Sum_probs=81.7
Q ss_pred CCeEEEEcCCCChHHHHHH----hhc-----CCeEEEEcCCHHHHHHHHHHHH------------------h--------
Q 042544 101 GQKVLDVGCGIGGPLREIA----QFS-----STSVTGLNNNEYQITRGKELNR------------------F-------- 145 (305)
Q Consensus 101 ~~~vLDiGcG~G~~~~~l~----~~~-----~~~v~gvD~s~~~l~~a~~~~~------------------~-------- 145 (305)
.-+|+..||+||.-..-+| +.. ..+|+|+|+|+.+++.|++-.- .
T Consensus 116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~ 195 (287)
T PRK10611 116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGL 195 (287)
T ss_pred CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCce
Confidence 4799999999997333332 321 3689999999999999987520 0
Q ss_pred ----cCCCCCeEEEEcCCCCCCCC-CCCeeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 146 ----AGVDKTCNFVKADFMKMPFP-DNSFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 146 ----~~~~~~~~~~~~d~~~~~~~-~~~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
..+...|.|.+.|+.+.+++ .+.||+|+|.+++.|+....... +++.+.+.|+|||++++..
T Consensus 196 ~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~---------vl~~l~~~L~pgG~L~lG~ 262 (287)
T PRK10611 196 VRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQER---------ILRRFVPLLKPDGLLFAGH 262 (287)
T ss_pred EEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHH---------HHHHHHHHhCCCcEEEEeC
Confidence 00234689999999875543 57899999999999998776544 6999999999999988864
No 167
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=99.02 E-value=1.2e-09 Score=92.06 Aligned_cols=107 Identities=17% Similarity=0.232 Sum_probs=83.9
Q ss_pred cCCCCCCeEEEEcCCCChHHHHHHhh--cCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCC-CC-C-----CC
Q 042544 96 LGLKSGQKVLDVGCGIGGPLREIAQF--SSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMK-MP-F-----PD 166 (305)
Q Consensus 96 ~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~-~~-~-----~~ 166 (305)
+...+..+|||||+++|..++.++.. ++++|+.+|+++...+.|++.+...|+.++++++++|+.+ ++ + ..
T Consensus 75 ~~~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~ 154 (247)
T PLN02589 75 LKLINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYH 154 (247)
T ss_pred HHHhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccC
Confidence 33345679999999999999999853 4689999999999999999999999998899999999876 22 1 12
Q ss_pred CCeeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 167 NSFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 167 ~~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
++||+|+.-.. ... . ...++.+.+.|+|||.+++..
T Consensus 155 ~~fD~iFiDad----K~~-Y---------~~y~~~~l~ll~~GGviv~DN 190 (247)
T PLN02589 155 GTFDFIFVDAD----KDN-Y---------INYHKRLIDLVKVGGVIGYDN 190 (247)
T ss_pred CcccEEEecCC----HHH-h---------HHHHHHHHHhcCCCeEEEEcC
Confidence 68999986432 111 1 125788899999999977743
No 168
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=99.00 E-value=3.1e-09 Score=85.19 Aligned_cols=107 Identities=21% Similarity=0.234 Sum_probs=71.3
Q ss_pred CCCCCeEEEEcCCCChHHHHHHhh-cCCeEEEEcCCHHHHHHHHHHHHhcC--CCCCeEEEEcCCCCCC----CCCCCee
Q 042544 98 LKSGQKVLDVGCGIGGPLREIAQF-SSTSVTGLNNNEYQITRGKELNRFAG--VDKTCNFVKADFMKMP----FPDNSFD 170 (305)
Q Consensus 98 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~--~~~~~~~~~~d~~~~~----~~~~~fD 170 (305)
..++.+|||+|||+|..++.++.. ...+|+..|.++ .++..+.+++..+ ...++.+...|..+.. ....+||
T Consensus 43 ~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D 121 (173)
T PF10294_consen 43 LFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFD 121 (173)
T ss_dssp GTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBS
T ss_pred hcCCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhccccccccccCcEEEecCcccccccccccCC
Confidence 456789999999999999999865 578999999998 9999999988765 4567888887765411 2346899
Q ss_pred EEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 171 AVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 171 ~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
+|++..++..-..... +++-+.++|+++|.+++..
T Consensus 122 ~IlasDv~Y~~~~~~~-----------L~~tl~~ll~~~~~vl~~~ 156 (173)
T PF10294_consen 122 VILASDVLYDEELFEP-----------LVRTLKRLLKPNGKVLLAY 156 (173)
T ss_dssp EEEEES--S-GGGHHH-----------HHHHHHHHBTT-TTEEEEE
T ss_pred EEEEecccchHHHHHH-----------HHHHHHHHhCCCCEEEEEe
Confidence 9999999886433333 5888889999999966654
No 169
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=98.98 E-value=1.7e-08 Score=85.97 Aligned_cols=106 Identities=16% Similarity=0.112 Sum_probs=83.7
Q ss_pred CCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEEecccc
Q 042544 99 KSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIEAT 178 (305)
Q Consensus 99 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l 178 (305)
-.+..|||+|||+|.++...+.....+|++++-| +|.+.|++.++...+.+++.++.+.++++.+| +..|++++--+-
T Consensus 176 F~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS-~MAqyA~~Lv~~N~~~~rItVI~GKiEdieLP-Ek~DviISEPMG 253 (517)
T KOG1500|consen 176 FQDKIVLDVGAGSGILSFFAAQAGAKKVYAVEAS-EMAQYARKLVASNNLADRITVIPGKIEDIELP-EKVDVIISEPMG 253 (517)
T ss_pred cCCcEEEEecCCccHHHHHHHHhCcceEEEEehh-HHHHHHHHHHhcCCccceEEEccCccccccCc-hhccEEEeccch
Confidence 3678999999999999998887656799999974 78899999999988899999999999998876 568999875443
Q ss_pred cccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEE
Q 042544 179 CHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIW 215 (305)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~ 215 (305)
..+-+.... ...-..++.|+|.|..+-.
T Consensus 254 ~mL~NERML---------EsYl~Ark~l~P~GkMfPT 281 (517)
T KOG1500|consen 254 YMLVNERML---------ESYLHARKWLKPNGKMFPT 281 (517)
T ss_pred hhhhhHHHH---------HHHHHHHhhcCCCCcccCc
Confidence 333333322 1455667999999987643
No 170
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=98.98 E-value=1.6e-09 Score=88.15 Aligned_cols=108 Identities=13% Similarity=0.240 Sum_probs=71.2
Q ss_pred CCCeEEEEcCCCChHHHHHH----hh----c--CCeEEEEcCCHHHHHHHHHHHH----hcCC-----------------
Q 042544 100 SGQKVLDVGCGIGGPLREIA----QF----S--STSVTGLNNNEYQITRGKELNR----FAGV----------------- 148 (305)
Q Consensus 100 ~~~~vLDiGcG~G~~~~~l~----~~----~--~~~v~gvD~s~~~l~~a~~~~~----~~~~----------------- 148 (305)
+..+|+..||+||.-...+| +. . ..+|+|+|+|+.+++.|++-.- ..++
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 55799999999997333332 31 1 2599999999999999987320 0001
Q ss_pred ------CCCeEEEEcCCCCCCCCCCCeeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 149 ------DKTCNFVKADFMKMPFPDNSFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 149 ------~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
...|.|.+.|+.+.+.+.+.||+|+|.+|+-++......+ +++.+.+.|+|||++++..
T Consensus 111 ~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~---------vl~~l~~~L~pgG~L~lG~ 175 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQR---------VLRRLHRSLKPGGYLFLGH 175 (196)
T ss_dssp TE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHH---------HHHHHGGGEEEEEEEEE-T
T ss_pred eEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHH---------HHHHHHHHcCCCCEEEEec
Confidence 1468999999988334467899999999999998887654 6999999999999999964
No 171
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=98.95 E-value=2.7e-08 Score=76.58 Aligned_cols=147 Identities=18% Similarity=0.170 Sum_probs=109.3
Q ss_pred HHHHHHHhhhHHHHHhhcCCccccccCCCCccHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCCChHHHHHHhh--cCCeE
Q 042544 49 DMVNKYYDLVTSFYEFGWGESFHFAPRWKGESLRESIKRHEHFLALQLGLKSGQKVLDVGCGIGGPLREIAQF--SSTSV 126 (305)
Q Consensus 49 ~~~~~~yd~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v 126 (305)
+.++.-+|....|+..++..-...+..-.+.. ..++.|........|.-|||+|.|||-++..+.++ ....+
T Consensus 3 ~~~~~~f~~e~~F~k~wi~~PrtVGaI~PsSs------~lA~~M~s~I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L 76 (194)
T COG3963 3 NKLARKFDEEISFFKGWIDNPRTVGAILPSSS------ILARKMASVIDPESGLPVLELGPGTGVITKAILSRGVRPESL 76 (194)
T ss_pred hHhhhhHHHHHHHHHHHhcCCceeeeecCCcH------HHHHHHHhccCcccCCeeEEEcCCccHhHHHHHhcCCCccce
Confidence 34555666666677665544333333222222 23345666778888999999999999999999864 45799
Q ss_pred EEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCC-----CCCCCeeEEEecccccccCChhhhhhcCCCCCcccHHH
Q 042544 127 TGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMP-----FPDNSFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRK 201 (305)
Q Consensus 127 ~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~-----~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~ 201 (305)
++++.|+..+....+.. +.++++.+|+.++. +.+..||.|+|.--+..+|-...++ .+++
T Consensus 77 ~~iE~~~dF~~~L~~~~------p~~~ii~gda~~l~~~l~e~~gq~~D~viS~lPll~~P~~~~ia---------ile~ 141 (194)
T COG3963 77 TAIEYSPDFVCHLNQLY------PGVNIINGDAFDLRTTLGEHKGQFFDSVISGLPLLNFPMHRRIA---------ILES 141 (194)
T ss_pred EEEEeCHHHHHHHHHhC------CCccccccchhhHHHHHhhcCCCeeeeEEeccccccCcHHHHHH---------HHHH
Confidence 99999999998877753 34678999998754 5567899999999888888877755 6999
Q ss_pred HHHHHHhCCceEEEe
Q 042544 202 CLEALKQAGFEVIWE 216 (305)
Q Consensus 202 ~~~~L~~gG~~~i~~ 216 (305)
+...|.+||.++-..
T Consensus 142 ~~~rl~~gg~lvqft 156 (194)
T COG3963 142 LLYRLPAGGPLVQFT 156 (194)
T ss_pred HHHhcCCCCeEEEEE
Confidence 999999999887754
No 172
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=98.95 E-value=1.3e-08 Score=86.86 Aligned_cols=80 Identities=18% Similarity=0.278 Sum_probs=64.0
Q ss_pred HHHHHHcCCCCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCe
Q 042544 90 HFLALQLGLKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSF 169 (305)
Q Consensus 90 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~f 169 (305)
+.+...+.+.++.+|||||||+|.++..+++. ...|+++|+++.+++.++++... ..+++++++|+..++++ .+
T Consensus 19 ~~i~~~~~~~~~~~VLEiG~G~G~lt~~L~~~-~~~v~~iE~d~~~~~~l~~~~~~---~~~v~v~~~D~~~~~~~--~~ 92 (253)
T TIGR00755 19 QKIVEAANVLEGDVVLEIGPGLGALTEPLLKR-AKKVTAIEIDPRLAEILRKLLSL---YERLEVIEGDALKVDLP--DF 92 (253)
T ss_pred HHHHHhcCCCCcCEEEEeCCCCCHHHHHHHHh-CCcEEEEECCHHHHHHHHHHhCc---CCcEEEEECchhcCChh--Hc
Confidence 34455667778899999999999999999976 46799999999999999877642 35799999999987764 46
Q ss_pred e---EEEec
Q 042544 170 D---AVYAI 175 (305)
Q Consensus 170 D---~v~~~ 175 (305)
| +|+++
T Consensus 93 d~~~~vvsN 101 (253)
T TIGR00755 93 PKQLKVVSN 101 (253)
T ss_pred CCcceEEEc
Confidence 6 55554
No 173
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=98.95 E-value=9.8e-09 Score=84.42 Aligned_cols=134 Identities=17% Similarity=0.239 Sum_probs=89.4
Q ss_pred CCcHHHHHhhHHHHHHHHHhhhHHHHHhhcCCccccccCCCCccHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCCChHHH
Q 042544 37 GGEEEERKANYTDMVNKYYDLVTSFYEFGWGESFHFAPRWKGESLRESIKRHEHFLALQLGLKSGQKVLDVGCGIGGPLR 116 (305)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~yd~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~ 116 (305)
+++.++....|.+.-.. ||.-..-|.. ....|...++...++... ..+....|.|+|||.+..+.
T Consensus 132 t~~s~~A~~lfkedp~a-fdlYH~gfr~-------QV~kWP~nPld~ii~~ik-------~r~~~~vIaD~GCGEakiA~ 196 (325)
T KOG3045|consen 132 TGTSSEAFDLFKEDPTA-FDLYHAGFRS-------QVKKWPENPLDVIIRKIK-------RRPKNIVIADFGCGEAKIAS 196 (325)
T ss_pred cCCcHHHHHHHhcCcHH-HHHHHHHHHH-------HHHhCCCChHHHHHHHHH-------hCcCceEEEecccchhhhhh
Confidence 45566666665554222 3332222221 124677777666555332 22456789999999987765
Q ss_pred HHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEEecccccccCChhhhhhcCCCCCc
Q 042544 117 EIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIEATCHAPDAAEIEIGDGLPDI 196 (305)
Q Consensus 117 ~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~~~ 196 (305)
. -...|+.+|+-+ .+-+++.+|+...|++|++.|+++++.++.-- +...
T Consensus 197 ---~-~~~kV~SfDL~a----------------~~~~V~~cDm~~vPl~d~svDvaV~CLSLMgt-n~~d---------- 245 (325)
T KOG3045|consen 197 ---S-ERHKVHSFDLVA----------------VNERVIACDMRNVPLEDESVDVAVFCLSLMGT-NLAD---------- 245 (325)
T ss_pred ---c-cccceeeeeeec----------------CCCceeeccccCCcCccCcccEEEeeHhhhcc-cHHH----------
Confidence 2 246899999832 24578899999999999999999988765432 2222
Q ss_pred ccHHHHHHHHHhCCceEEEec
Q 042544 197 RSTRKCLEALKQAGFEVIWEK 217 (305)
Q Consensus 197 ~~l~~~~~~L~~gG~~~i~~~ 217 (305)
++.++.|+|++||.+.|.+.
T Consensus 246 -f~kEa~RiLk~gG~l~IAEv 265 (325)
T KOG3045|consen 246 -FIKEANRILKPGGLLYIAEV 265 (325)
T ss_pred -HHHHHHHHhccCceEEEEeh
Confidence 69999999999999999873
No 174
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=98.93 E-value=1.1e-08 Score=89.23 Aligned_cols=81 Identities=15% Similarity=0.168 Sum_probs=63.8
Q ss_pred CCCeEEEEcCCCChHHHHHH-hhcCCeEEEEcCCHHHHHHHHHHHHhc-CCCCCeEEEE-cCCCCCC----CCCCCeeEE
Q 042544 100 SGQKVLDVGCGIGGPLREIA-QFSSTSVTGLNNNEYQITRGKELNRFA-GVDKTCNFVK-ADFMKMP----FPDNSFDAV 172 (305)
Q Consensus 100 ~~~~vLDiGcG~G~~~~~l~-~~~~~~v~gvD~s~~~l~~a~~~~~~~-~~~~~~~~~~-~d~~~~~----~~~~~fD~v 172 (305)
++.+|||||||+|.....++ +.++.+++|+|+++.+++.|+++++.. ++..++++.+ .|...+. .+++.||+|
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDli 193 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDAT 193 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEEE
Confidence 46799999999998887777 446789999999999999999999998 6877888864 3333221 246789999
Q ss_pred Eecccccc
Q 042544 173 YAIEATCH 180 (305)
Q Consensus 173 ~~~~~l~~ 180 (305)
+|+--++.
T Consensus 194 vcNPPf~~ 201 (321)
T PRK11727 194 LCNPPFHA 201 (321)
T ss_pred EeCCCCcC
Confidence 99866543
No 175
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=98.92 E-value=1.4e-09 Score=97.83 Aligned_cols=115 Identities=20% Similarity=0.225 Sum_probs=76.4
Q ss_pred HHHHHHHHHHHcCC--C--CCCeEEEEcCCCChHHHHHHhhcCCeEEEE---cCCHHHHHHHHHHHHhcCCCCCeEEEEc
Q 042544 85 IKRHEHFLALQLGL--K--SGQKVLDVGCGIGGPLREIAQFSSTSVTGL---NNNEYQITRGKELNRFAGVDKTCNFVKA 157 (305)
Q Consensus 85 ~~~~~~~l~~~~~~--~--~~~~vLDiGcG~G~~~~~l~~~~~~~v~gv---D~s~~~l~~a~~~~~~~~~~~~~~~~~~ 157 (305)
...+.+.+.+.++. . .-..+||+|||+|.++..|.+. +..+..+ |..+.+++.|.++ |++. .+-..
T Consensus 98 a~~Yid~i~~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~r-~V~t~s~a~~d~~~~qvqfaleR----Gvpa--~~~~~ 170 (506)
T PF03141_consen 98 ADHYIDQIAEMIPLIKWGGGIRTALDVGCGVASFGAYLLER-NVTTMSFAPNDEHEAQVQFALER----GVPA--MIGVL 170 (506)
T ss_pred HHHHHHHHHHHhhccccCCceEEEEeccceeehhHHHHhhC-CceEEEcccccCCchhhhhhhhc----Ccch--hhhhh
Confidence 34455555555544 2 2347899999999999999875 4444333 4444555555443 4432 11122
Q ss_pred CCCCCCCCCCCeeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 158 DFMKMPFPDNSFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 158 d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
-...+||++++||+|.|..++......+.. ++-++-|+|+|||+++++.
T Consensus 171 ~s~rLPfp~~~fDmvHcsrc~i~W~~~~g~----------~l~evdRvLRpGGyfv~S~ 219 (506)
T PF03141_consen 171 GSQRLPFPSNAFDMVHCSRCLIPWHPNDGF----------LLFEVDRVLRPGGYFVLSG 219 (506)
T ss_pred ccccccCCccchhhhhcccccccchhcccc----------eeehhhhhhccCceEEecC
Confidence 235689999999999999876554433322 6889999999999999865
No 176
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=98.92 E-value=7.7e-09 Score=83.36 Aligned_cols=115 Identities=24% Similarity=0.315 Sum_probs=79.4
Q ss_pred HHHHHHHcCCCCCCeEEEEcCCCChHHHHHHh-hcCCe---------EEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcC
Q 042544 89 EHFLALQLGLKSGQKVLDVGCGIGGPLREIAQ-FSSTS---------VTGLNNNEYQITRGKELNRFAGVDKTCNFVKAD 158 (305)
Q Consensus 89 ~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~-~~~~~---------v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d 158 (305)
+..|.......++..|||--||+|.+.++.+. ..... ++|.|+++.+++.|++++...+....+.+.+.|
T Consensus 17 A~~ll~la~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~D 96 (179)
T PF01170_consen 17 AAALLNLAGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQWD 96 (179)
T ss_dssp HHHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE--
T ss_pred HHHHHHHhCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEecc
Confidence 34556677788899999999999999999874 23444 899999999999999999999988889999999
Q ss_pred CCCCCCCCCCeeEEEeccccccc-CChhhh-hhcCCCCCcccHHHHHHHHHh
Q 042544 159 FMKMPFPDNSFDAVYAIEATCHA-PDAAEI-EIGDGLPDIRSTRKCLEALKQ 208 (305)
Q Consensus 159 ~~~~~~~~~~fD~v~~~~~l~~~-~~~~~~-~~~~~~~~~~~l~~~~~~L~~ 208 (305)
+..+++.++++|+|++.--...- ...... .+ -..+++++.++|++
T Consensus 97 ~~~l~~~~~~~d~IvtnPPyG~r~~~~~~~~~l-----y~~~~~~~~~~l~~ 143 (179)
T PF01170_consen 97 ARELPLPDGSVDAIVTNPPYGRRLGSKKDLEKL-----YRQFLRELKRVLKP 143 (179)
T ss_dssp GGGGGGTTSBSCEEEEE--STTSHCHHHHHHHH-----HHHHHHHHHCHSTT
T ss_pred hhhcccccCCCCEEEECcchhhhccCHHHHHHH-----HHHHHHHHHHHCCC
Confidence 99998777899999986544322 111110 00 01146777778888
No 177
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=98.89 E-value=1.2e-08 Score=88.18 Aligned_cols=102 Identities=19% Similarity=0.247 Sum_probs=82.1
Q ss_pred CCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEEecccccc
Q 042544 101 GQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIEATCH 180 (305)
Q Consensus 101 ~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~ 180 (305)
-...+|+|.|.|..+..+... ..+|-+++.....+..+..... +.|+.+-+|+..- .|.+ |+|++.+++||
T Consensus 178 v~~avDvGgGiG~v~k~ll~~-fp~ik~infdlp~v~~~a~~~~-----~gV~~v~gdmfq~-~P~~--daI~mkWiLhd 248 (342)
T KOG3178|consen 178 VNVAVDVGGGIGRVLKNLLSK-YPHIKGINFDLPFVLAAAPYLA-----PGVEHVAGDMFQD-TPKG--DAIWMKWILHD 248 (342)
T ss_pred CceEEEcCCcHhHHHHHHHHh-CCCCceeecCHHHHHhhhhhhc-----CCcceeccccccc-CCCc--CeEEEEeeccc
Confidence 478999999999999999863 3457788887777766555432 2378888898764 4543 79999999999
Q ss_pred cCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEeccCC
Q 042544 181 APDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEKDLA 220 (305)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~~~~~ 220 (305)
++|.+.++ ++++|+..|+|+|.+++.+...+
T Consensus 249 wtDedcvk---------iLknC~~sL~~~GkIiv~E~V~p 279 (342)
T KOG3178|consen 249 WTDEDCVK---------ILKNCKKSLPPGGKIIVVENVTP 279 (342)
T ss_pred CChHHHHH---------HHHHHHHhCCCCCEEEEEeccCC
Confidence 99999876 79999999999999999886554
No 178
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.89 E-value=1e-08 Score=85.24 Aligned_cols=91 Identities=16% Similarity=0.117 Sum_probs=60.8
Q ss_pred CCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCe-EEEEcCCCCCC-----CCCCCeeEE
Q 042544 99 KSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTC-NFVKADFMKMP-----FPDNSFDAV 172 (305)
Q Consensus 99 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~-~~~~~d~~~~~-----~~~~~fD~v 172 (305)
.++.+|||+|||||.++..+++....+|+|+|+++.|+....+. ..++ .+...|+.... ..-..+|++
T Consensus 74 ~~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~~l~~------~~~v~~~~~~ni~~~~~~~~~~d~~~~Dvs 147 (228)
T TIGR00478 74 VKNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAEKLRQ------DERVKVLERTNIRYVTPADIFPDFATFDVS 147 (228)
T ss_pred CCCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHhc------CCCeeEeecCCcccCCHhHcCCCceeeeEE
Confidence 36789999999999999999986456899999999888652211 1122 23333444222 112357777
Q ss_pred EecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEE
Q 042544 173 YAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIW 215 (305)
Q Consensus 173 ~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~ 215 (305)
+++..+ .+..+.+.|+| |.+++.
T Consensus 148 fiS~~~-------------------~l~~i~~~l~~-~~~~~L 170 (228)
T TIGR00478 148 FISLIS-------------------ILPELDLLLNP-NDLTLL 170 (228)
T ss_pred EeehHh-------------------HHHHHHHHhCc-CeEEEE
Confidence 665432 37788999999 776664
No 179
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=98.89 E-value=5.1e-08 Score=82.80 Aligned_cols=108 Identities=10% Similarity=0.151 Sum_probs=81.9
Q ss_pred CCCeEEEEcCCCChH--HHHH--Hhhc------CCeEEEEcCCHHHHHHHHHHHHh-----cCC----------------
Q 042544 100 SGQKVLDVGCGIGGP--LREI--AQFS------STSVTGLNNNEYQITRGKELNRF-----AGV---------------- 148 (305)
Q Consensus 100 ~~~~vLDiGcG~G~~--~~~l--~~~~------~~~v~gvD~s~~~l~~a~~~~~~-----~~~---------------- 148 (305)
..-+|.-+||+||.- ++.+ .+.. ..+|+|.|||..+|+.|++-.-. .++
T Consensus 96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~ 175 (268)
T COG1352 96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGS 175 (268)
T ss_pred CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCc
Confidence 357999999999973 3332 2322 47999999999999998763211 111
Q ss_pred -------CCCeEEEEcCCCCCCCCCCCeeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 149 -------DKTCNFVKADFMKMPFPDNSFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 149 -------~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
...|.|...|+..-++..+.||+|+|.+|+.++..+.+.+ .+..++..|+|||++++-.
T Consensus 176 y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~---------il~~f~~~L~~gG~LflG~ 241 (268)
T COG1352 176 YRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQER---------ILRRFADSLKPGGLLFLGH 241 (268)
T ss_pred EEEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHHHHH---------HHHHHHHHhCCCCEEEEcc
Confidence 1357888888877553457799999999999999887755 6999999999999999954
No 180
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=98.87 E-value=3.7e-09 Score=88.47 Aligned_cols=101 Identities=27% Similarity=0.370 Sum_probs=82.1
Q ss_pred CCCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEEeccc
Q 042544 98 LKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIEA 177 (305)
Q Consensus 98 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~ 177 (305)
.+.+..+||+|||.|..+.. +|.+.++|.|++...+..+++. +......+|+..+|+.+.+||.++++.+
T Consensus 43 ~~~gsv~~d~gCGngky~~~---~p~~~~ig~D~c~~l~~~ak~~-------~~~~~~~ad~l~~p~~~~s~d~~lsiav 112 (293)
T KOG1331|consen 43 QPTGSVGLDVGCGNGKYLGV---NPLCLIIGCDLCTGLLGGAKRS-------GGDNVCRADALKLPFREESFDAALSIAV 112 (293)
T ss_pred cCCcceeeecccCCcccCcC---CCcceeeecchhhhhccccccC-------CCceeehhhhhcCCCCCCccccchhhhh
Confidence 35688999999999865532 3678899999999998877652 1126888999999999999999999999
Q ss_pred ccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 178 TCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 178 l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
+||+...... ..+++++.++|+|||..++..
T Consensus 113 ihhlsT~~RR--------~~~l~e~~r~lrpgg~~lvyv 143 (293)
T KOG1331|consen 113 IHHLSTRERR--------ERALEELLRVLRPGGNALVYV 143 (293)
T ss_pred hhhhhhHHHH--------HHHHHHHHHHhcCCCceEEEE
Confidence 9999876543 347999999999999977754
No 181
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.86 E-value=2.5e-08 Score=79.69 Aligned_cols=102 Identities=23% Similarity=0.188 Sum_probs=81.1
Q ss_pred CCCCCeEEEEcCCCChHHHHHHhh---cCCeEEEEcCCHHHHHHHHHHHHhcCC---------CCCeEEEEcCCCCCCCC
Q 042544 98 LKSGQKVLDVGCGIGGPLREIAQF---SSTSVTGLNNNEYQITRGKELNRFAGV---------DKTCNFVKADFMKMPFP 165 (305)
Q Consensus 98 ~~~~~~vLDiGcG~G~~~~~l~~~---~~~~v~gvD~s~~~l~~a~~~~~~~~~---------~~~~~~~~~d~~~~~~~ 165 (305)
+.||.+.||+|+|||+++.-++.. ++..++|||.-++.++.+++++...-- ..++.++++|....--+
T Consensus 80 L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~~e 159 (237)
T KOG1661|consen 80 LQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGYAE 159 (237)
T ss_pred hccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccCCc
Confidence 679999999999999999988843 344559999999999999998865431 23678899999886666
Q ss_pred CCCeeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 166 DNSFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 166 ~~~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
..+||+|++.....- ..+++...|++||.+++-.
T Consensus 160 ~a~YDaIhvGAaa~~-----------------~pq~l~dqL~~gGrllip~ 193 (237)
T KOG1661|consen 160 QAPYDAIHVGAAASE-----------------LPQELLDQLKPGGRLLIPV 193 (237)
T ss_pred cCCcceEEEccCccc-----------------cHHHHHHhhccCCeEEEee
Confidence 789999988633221 4778889999999999853
No 182
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.86 E-value=9.6e-09 Score=95.82 Aligned_cols=112 Identities=16% Similarity=0.215 Sum_probs=86.0
Q ss_pred CCCCeEEEEcCCCChHHHHHH-hhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCC--CCCCCCeeEEEec
Q 042544 99 KSGQKVLDVGCGIGGPLREIA-QFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKM--PFPDNSFDAVYAI 175 (305)
Q Consensus 99 ~~~~~vLDiGcG~G~~~~~l~-~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~fD~v~~~ 175 (305)
..+..+||||||.|.++..+| .+|...++|+|++...+..+.+++...++. |+.++..|+..+ -++++++|.|+..
T Consensus 346 ~~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~-N~~~~~~~~~~~~~~~~~~sv~~i~i~ 424 (506)
T PRK01544 346 EKRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNIT-NFLLFPNNLDLILNDLPNNSLDGIYIL 424 (506)
T ss_pred CCCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCC-eEEEEcCCHHHHHHhcCcccccEEEEE
Confidence 346789999999999999999 568899999999999999988888777764 788888887532 2678889999874
Q ss_pred ccccccCChhh--hhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 176 EATCHAPDAAE--IEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 176 ~~l~~~~~~~~--~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
+|||-. ......+.+..+++.+.+.|+|||.+.+.+
T Consensus 425 -----FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~T 462 (506)
T PRK01544 425 -----FPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFAS 462 (506)
T ss_pred -----CCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEc
Confidence 444421 111112333457999999999999998865
No 183
>PRK04148 hypothetical protein; Provisional
Probab=98.86 E-value=2.2e-08 Score=75.49 Aligned_cols=78 Identities=18% Similarity=0.275 Sum_probs=59.8
Q ss_pred HHHHHHcCCCCCCeEEEEcCCCCh-HHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCC-CC
Q 042544 90 HFLALQLGLKSGQKVLDVGCGIGG-PLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFP-DN 167 (305)
Q Consensus 90 ~~l~~~~~~~~~~~vLDiGcG~G~-~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~-~~ 167 (305)
+++...+...++.+|||||||+|. .+..|++. +.+|+++|+++..++.++++ .++++++|+.+.++. -.
T Consensus 6 ~~l~~~~~~~~~~kileIG~GfG~~vA~~L~~~-G~~ViaIDi~~~aV~~a~~~--------~~~~v~dDlf~p~~~~y~ 76 (134)
T PRK04148 6 EFIAENYEKGKNKKIVELGIGFYFKVAKKLKES-GFDVIVIDINEKAVEKAKKL--------GLNAFVDDLFNPNLEIYK 76 (134)
T ss_pred HHHHHhcccccCCEEEEEEecCCHHHHHHHHHC-CCEEEEEECCHHHHHHHHHh--------CCeEEECcCCCCCHHHHh
Confidence 344444544567899999999996 77778765 89999999999999888764 368999999874432 25
Q ss_pred CeeEEEecc
Q 042544 168 SFDAVYAIE 176 (305)
Q Consensus 168 ~fD~v~~~~ 176 (305)
.+|+|++..
T Consensus 77 ~a~liysir 85 (134)
T PRK04148 77 NAKLIYSIR 85 (134)
T ss_pred cCCEEEEeC
Confidence 689998764
No 184
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=98.85 E-value=1.7e-08 Score=92.34 Aligned_cols=103 Identities=17% Similarity=0.169 Sum_probs=72.8
Q ss_pred CCeEEEEcCCCChHHHHHHhhc-----CCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEEec
Q 042544 101 GQKVLDVGCGIGGPLREIAQFS-----STSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAI 175 (305)
Q Consensus 101 ~~~vLDiGcG~G~~~~~l~~~~-----~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~ 175 (305)
+..|||||||+|.++...++.. ..+|++|+-++.+....++++...++.++|+++++|++++..+ ..+|+|++-
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~lp-ekvDIIVSE 265 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVELP-EKVDIIVSE 265 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCHS-S-EEEEEE-
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCCC-CceeEEEEe
Confidence 5789999999999987765431 3699999999998888888777888888999999999998765 489999985
Q ss_pred ccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceE
Q 042544 176 EATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEV 213 (305)
Q Consensus 176 ~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~ 213 (305)
..=. +.+.+.. ...+....+.|||+|.++
T Consensus 266 lLGs-fg~nEl~--------pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 266 LLGS-FGDNELS--------PECLDAADRFLKPDGIMI 294 (448)
T ss_dssp --BT-TBTTTSH--------HHHHHHGGGGEEEEEEEE
T ss_pred ccCC-ccccccC--------HHHHHHHHhhcCCCCEEe
Confidence 4422 2222111 114677778999998654
No 185
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=98.85 E-value=1.6e-08 Score=82.27 Aligned_cols=76 Identities=14% Similarity=0.067 Sum_probs=61.8
Q ss_pred CCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCC-C-C-CCC-CeeEEEec
Q 042544 100 SGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKM-P-F-PDN-SFDAVYAI 175 (305)
Q Consensus 100 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~-~-~-~~~-~fD~v~~~ 175 (305)
++.+|||++||+|.+++.++.+...+|+++|.++.+++.++++++..+...+++++.+|+... . + ... .||+|+.-
T Consensus 49 ~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~D 128 (189)
T TIGR00095 49 QGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYLD 128 (189)
T ss_pred CCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEEC
Confidence 578999999999999999997644589999999999999999999888766789999999552 2 1 122 36777653
No 186
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=98.82 E-value=5.2e-08 Score=89.48 Aligned_cols=123 Identities=18% Similarity=0.140 Sum_probs=88.7
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHhhc--CCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCC-CCCCCeeEEE
Q 042544 97 GLKSGQKVLDVGCGIGGPLREIAQFS--STSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMP-FPDNSFDAVY 173 (305)
Q Consensus 97 ~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~fD~v~ 173 (305)
.+.++.+|||+|||.|.=+.++++.. .+.|+++|+++..+...++++.+.|+. ++.+...|...++ ...+.||.|+
T Consensus 110 ~~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~-nv~v~~~D~~~~~~~~~~~fD~IL 188 (470)
T PRK11933 110 DDNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVS-NVALTHFDGRVFGAALPETFDAIL 188 (470)
T ss_pred CCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEeCchhhhhhhchhhcCeEE
Confidence 66899999999999999999998643 469999999999999999999999885 6888888887643 2236799999
Q ss_pred ----ecc--cccccCChhhhh---hcCCC--CCcccHHHHHHHHHhCCceEEEeccCC
Q 042544 174 ----AIE--ATCHAPDAAEIE---IGDGL--PDIRSTRKCLEALKQAGFEVIWEKDLA 220 (305)
Q Consensus 174 ----~~~--~l~~~~~~~~~~---~~~~~--~~~~~l~~~~~~L~~gG~~~i~~~~~~ 220 (305)
|++ ++..-|+....- ....+ .....+..+.+.|||||.++.++..+.
T Consensus 189 vDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~~ 246 (470)
T PRK11933 189 LDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTLN 246 (470)
T ss_pred EcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCCC
Confidence 443 333333221000 00000 002368889999999999998876543
No 187
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=98.82 E-value=4.5e-09 Score=84.87 Aligned_cols=102 Identities=19% Similarity=0.255 Sum_probs=82.9
Q ss_pred CCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEEeccccc
Q 042544 100 SGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIEATC 179 (305)
Q Consensus 100 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~ 179 (305)
....++|||||.|....++....-.+++-+|.|..|++.++.. +..++ .+...++|-+.++|.++++|+|+++..+|
T Consensus 72 ~fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~~-qdp~i--~~~~~v~DEE~Ldf~ens~DLiisSlslH 148 (325)
T KOG2940|consen 72 SFPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRDA-QDPSI--ETSYFVGDEEFLDFKENSVDLIISSLSLH 148 (325)
T ss_pred hCcceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhcc-CCCce--EEEEEecchhcccccccchhhhhhhhhhh
Confidence 3568999999999999999854357899999999999988763 11111 35677889888999999999999999999
Q ss_pred ccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEE
Q 042544 180 HAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIW 215 (305)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~ 215 (305)
+..+... .+.+|+..|||+|.++-.
T Consensus 149 W~NdLPg-----------~m~~ck~~lKPDg~Fias 173 (325)
T KOG2940|consen 149 WTNDLPG-----------SMIQCKLALKPDGLFIAS 173 (325)
T ss_pred hhccCch-----------HHHHHHHhcCCCccchhH
Confidence 8887644 588899999999987653
No 188
>PF08498 Sterol_MT_C: Sterol methyltransferase C-terminal; InterPro: IPR013705 This domain is found to the C terminus of a methyltransferase domain (IPR013216 from INTERPRO) in fungal and plant sterol methyltransferases []. ; GO: 0008168 methyltransferase activity, 0006694 steroid biosynthetic process
Probab=98.81 E-value=1.5e-08 Score=66.19 Aligned_cols=65 Identities=57% Similarity=1.086 Sum_probs=61.7
Q ss_pred cccccchhHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHhcCCcccccccceEEEEEcCC
Q 042544 239 SSFRLTSVGRFVTRNMVKALEFVGLAPKGSQRVQDFLEKAAEGLAAGGRKEIFTPMYFFLARKPQ 303 (305)
Q Consensus 239 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~arKp~ 303 (305)
..+++..+|+++.+.+...+|.++++|.+..+..+.+..+...+++.++.++|.|+|+++||||.
T Consensus 3 t~~r~t~~Gr~~t~~~v~~LE~lglAPkGt~~v~~~L~~aa~~Lv~GG~~giFTPMyl~v~RKP~ 67 (67)
T PF08498_consen 3 TVFRMTWLGRFITHALVRVLEFLGLAPKGTSKVAEMLAKAADGLVEGGKTGIFTPMYLFVARKPE 67 (67)
T ss_pred eEEeccHHHHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHHHHHhhhcCCcCchhheeeccCC
Confidence 45688999999999999999999999999999999999999999999999999999999999995
No 189
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=98.81 E-value=3.5e-08 Score=81.83 Aligned_cols=83 Identities=18% Similarity=0.251 Sum_probs=71.5
Q ss_pred HHHHHHcCCCCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCe
Q 042544 90 HFLALQLGLKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSF 169 (305)
Q Consensus 90 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~f 169 (305)
+.+....+++++..|||||.|||.+|..+.+. +.+|+++++++.|++...++..........+++++|+...++| .|
T Consensus 48 ~~I~~ka~~k~tD~VLEvGPGTGnLT~~lLe~-~kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d~P--~f 124 (315)
T KOG0820|consen 48 DQIVEKADLKPTDVVLEVGPGTGNLTVKLLEA-GKKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTDLP--RF 124 (315)
T ss_pred HHHHhccCCCCCCEEEEeCCCCCHHHHHHHHh-cCeEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCCCc--cc
Confidence 44555678899999999999999999999986 8999999999999999999988766567899999999887654 58
Q ss_pred eEEEec
Q 042544 170 DAVYAI 175 (305)
Q Consensus 170 D~v~~~ 175 (305)
|.++++
T Consensus 125 d~cVsN 130 (315)
T KOG0820|consen 125 DGCVSN 130 (315)
T ss_pred ceeecc
Confidence 998873
No 190
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.80 E-value=4.3e-08 Score=73.57 Aligned_cols=79 Identities=18% Similarity=0.236 Sum_probs=66.5
Q ss_pred CCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEEecccc
Q 042544 99 KSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIEAT 178 (305)
Q Consensus 99 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l 178 (305)
-.|+.++|+|||+|-++...+......|+|+||.|..++.+++++....+ ++++.++|..++-+..+.||.++.+.-+
T Consensus 47 iEgkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEv--qidlLqcdildle~~~g~fDtaviNppF 124 (185)
T KOG3420|consen 47 IEGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRNAEEFEV--QIDLLQCDILDLELKGGIFDTAVINPPF 124 (185)
T ss_pred ccCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHhhchHHhhh--hhheeeeeccchhccCCeEeeEEecCCC
Confidence 36889999999999999777655467899999999999999999888766 4799999999876667899998876544
Q ss_pred c
Q 042544 179 C 179 (305)
Q Consensus 179 ~ 179 (305)
.
T Consensus 125 G 125 (185)
T KOG3420|consen 125 G 125 (185)
T ss_pred C
Confidence 3
No 191
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=98.79 E-value=3.2e-08 Score=80.61 Aligned_cols=99 Identities=25% Similarity=0.291 Sum_probs=73.4
Q ss_pred CCCCCeEEEEcCCCChHHHHHHh-hcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEEecc
Q 042544 98 LKSGQKVLDVGCGIGGPLREIAQ-FSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIE 176 (305)
Q Consensus 98 ~~~~~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~ 176 (305)
..++.+|||+.||.|.+++.++. ..+..|+++|++|..++..+++++..++...+..+++|...+.. .+.||.|++..
T Consensus 99 v~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~-~~~~drvim~l 177 (200)
T PF02475_consen 99 VKPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLP-EGKFDRVIMNL 177 (200)
T ss_dssp --TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG----TT-EEEEEE--
T ss_pred CCcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcC-ccccCEEEECC
Confidence 56899999999999999999996 34678999999999999999999999998889999999988654 68899888643
Q ss_pred cccccCChhhhhhcCCCCCcccHHHHHHHHHhCCce
Q 042544 177 ATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFE 212 (305)
Q Consensus 177 ~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~ 212 (305)
|... ..++..+.+++++||++
T Consensus 178 -----p~~~----------~~fl~~~~~~~~~~g~i 198 (200)
T PF02475_consen 178 -----PESS----------LEFLDAALSLLKEGGII 198 (200)
T ss_dssp -----TSSG----------GGGHHHHHHHEEEEEEE
T ss_pred -----hHHH----------HHHHHHHHHHhcCCcEE
Confidence 2221 12689999999999865
No 192
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.76 E-value=3.5e-08 Score=89.67 Aligned_cols=139 Identities=19% Similarity=0.172 Sum_probs=98.9
Q ss_pred cccCCCCccHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCC
Q 042544 72 FAPRWKGESLRESIKRHEHFLALQLGLKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKT 151 (305)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~ 151 (305)
+.++-.-+......+.......+.+...++.+|||+=||.|.+++.+|.. ..+|+|+|+++.+++.|+++++.+++. +
T Consensus 265 ~~~~sF~Q~N~~~~ekl~~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~-~~~V~gvEi~~~aV~~A~~NA~~n~i~-N 342 (432)
T COG2265 265 ISPRSFFQVNPAVAEKLYETALEWLELAGGERVLDLYCGVGTFGLPLAKR-VKKVHGVEISPEAVEAAQENAAANGID-N 342 (432)
T ss_pred eCCCCceecCHHHHHHHHHHHHHHHhhcCCCEEEEeccCCChhhhhhccc-CCEEEEEecCHHHHHHHHHHHHHcCCC-c
Confidence 33433334455566677777888888888899999999999999999965 789999999999999999999999986 4
Q ss_pred eEEEEcCCCCCCCC---CCCeeEEEecccc--------cccCChhhhhhcCCCCCcccHHHHHHHHHhCCce
Q 042544 152 CNFVKADFMKMPFP---DNSFDAVYAIEAT--------CHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFE 212 (305)
Q Consensus 152 ~~~~~~d~~~~~~~---~~~fD~v~~~~~l--------~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~ 212 (305)
++|+.++++++... ...+|.|+.---- ..+.......+.+..++..++.+=.+.|...|+-
T Consensus 343 ~~f~~~~ae~~~~~~~~~~~~d~VvvDPPR~G~~~~~lk~l~~~~p~~IvYVSCNP~TlaRDl~~L~~~gy~ 414 (432)
T COG2265 343 VEFIAGDAEEFTPAWWEGYKPDVVVVDPPRAGADREVLKQLAKLKPKRIVYVSCNPATLARDLAILASTGYE 414 (432)
T ss_pred EEEEeCCHHHHhhhccccCCCCEEEECCCCCCCCHHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhCCeE
Confidence 99999999985422 3478999863211 1111111112233345555666667777777764
No 193
>PLN02823 spermine synthase
Probab=98.74 E-value=5e-08 Score=85.93 Aligned_cols=112 Identities=18% Similarity=0.124 Sum_probs=79.3
Q ss_pred CCCeEEEEcCCCChHHHHHHhh-cCCeEEEEcCCHHHHHHHHHHHHhcC---CCCCeEEEEcCCCC-CCCCCCCeeEEEe
Q 042544 100 SGQKVLDVGCGIGGPLREIAQF-SSTSVTGLNNNEYQITRGKELNRFAG---VDKTCNFVKADFMK-MPFPDNSFDAVYA 174 (305)
Q Consensus 100 ~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~---~~~~~~~~~~d~~~-~~~~~~~fD~v~~ 174 (305)
...+||.||+|.|..+..+.+. +..+|+.+|+++.+++.|++.+...+ ..++++++.+|+.. +...+++||+|++
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi~ 182 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVIIG 182 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEEe
Confidence 4569999999999999998865 35789999999999999999865321 24689999999987 3334578999997
Q ss_pred cccccccCChhhhhhcCCCCCcccHH-HHHHHHHhCCceEEEe
Q 042544 175 IEATCHAPDAAEIEIGDGLPDIRSTR-KCLEALKQAGFEVIWE 216 (305)
Q Consensus 175 ~~~l~~~~~~~~~~~~~~~~~~~~l~-~~~~~L~~gG~~~i~~ 216 (305)
-.. ++........+-...+++ .+.+.|+|||.+++..
T Consensus 183 D~~-----dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q~ 220 (336)
T PLN02823 183 DLA-----DPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQA 220 (336)
T ss_pred cCC-----CccccCcchhhccHHHHHHHHHHhcCCCcEEEEec
Confidence 521 110000000011122577 8899999999988753
No 194
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=98.74 E-value=2.7e-07 Score=78.28 Aligned_cols=102 Identities=23% Similarity=0.263 Sum_probs=73.5
Q ss_pred CCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhc---------------------------------
Q 042544 100 SGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFA--------------------------------- 146 (305)
Q Consensus 100 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~--------------------------------- 146 (305)
...+||--|||.|.++..+|.. +..+.|.|.|..|+-..+-.+...
T Consensus 56 ~~~~VLVPGsGLGRLa~Eia~~-G~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPDv 134 (270)
T PF07942_consen 56 SKIRVLVPGSGLGRLAWEIAKL-GYAVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPDV 134 (270)
T ss_pred CccEEEEcCCCcchHHHHHhhc-cceEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeCCc
Confidence 4579999999999999999987 889999999999985544332210
Q ss_pred ------CCCCCeEEEEcCCCCCCCCC---CCeeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceE
Q 042544 147 ------GVDKTCNFVKADFMKMPFPD---NSFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEV 213 (305)
Q Consensus 147 ------~~~~~~~~~~~d~~~~~~~~---~~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~ 213 (305)
....++....+|+.+...++ ++||+|+.++.+.-.++.- ..++.+.++|||||.++
T Consensus 135 ~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDTA~Ni~-----------~Yi~tI~~lLkpgG~WI 199 (270)
T PF07942_consen 135 DPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDTAENII-----------EYIETIEHLLKPGGYWI 199 (270)
T ss_pred CcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeechHHHH-----------HHHHHHHHHhccCCEEE
Confidence 00124556667776644334 6899999886655544442 36999999999999544
No 195
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=98.73 E-value=7.1e-08 Score=86.68 Aligned_cols=104 Identities=18% Similarity=0.100 Sum_probs=79.9
Q ss_pred CCeEEEEcCCCChHHHHHHhh-cCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEEeccccc
Q 042544 101 GQKVLDVGCGIGGPLREIAQF-SSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIEATC 179 (305)
Q Consensus 101 ~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~ 179 (305)
+.+|||++||+|..++.++.. ...+|+++|+++.+++.++++++..++. ++++.++|+..+....+.||+|++.- .
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~-~~~v~~~Da~~~l~~~~~fD~V~lDP-~- 134 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLE-NEKVFNKDANALLHEERKFDVVDIDP-F- 134 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-ceEEEhhhHHHHHhhcCCCCEEEECC-C-
Confidence 468999999999999999854 3358999999999999999999888774 57799999876321145799998742 1
Q ss_pred ccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEeccCC
Q 042544 180 HAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEKDLA 220 (305)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~~~~~ 220 (305)
..+.. ++....+.++++|++.++..|..
T Consensus 135 --Gs~~~-----------~l~~al~~~~~~gilyvSAtD~~ 162 (382)
T PRK04338 135 --GSPAP-----------FLDSAIRSVKRGGLLCVTATDTA 162 (382)
T ss_pred --CCcHH-----------HHHHHHHHhcCCCEEEEEecCch
Confidence 11111 57777788999999999865544
No 196
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=98.70 E-value=5.5e-08 Score=83.86 Aligned_cols=82 Identities=16% Similarity=0.196 Sum_probs=66.0
Q ss_pred HHHHcCCCCCCeEEEEcCCCChHHHHHHhhc--CCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCC--CCCC
Q 042544 92 LALQLGLKSGQKVLDVGCGIGGPLREIAQFS--STSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMP--FPDN 167 (305)
Q Consensus 92 l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~--~~~~ 167 (305)
++..+.+.++..+||++||.|..+..+++.. .++|+|+|.++.+++.|++++.. ..+++++++|+.++. .+++
T Consensus 11 vl~~L~~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~---~~ri~~i~~~f~~l~~~l~~~ 87 (296)
T PRK00050 11 VVDALAIKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP---FGRFTLVHGNFSNLKEVLAEG 87 (296)
T ss_pred HHHhhCCCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc---CCcEEEEeCCHHHHHHHHHcC
Confidence 3445667788899999999999999999653 58999999999999999988754 357999999998743 2222
Q ss_pred --CeeEEEecc
Q 042544 168 --SFDAVYAIE 176 (305)
Q Consensus 168 --~fD~v~~~~ 176 (305)
++|.|++..
T Consensus 88 ~~~vDgIl~DL 98 (296)
T PRK00050 88 LGKVDGILLDL 98 (296)
T ss_pred CCccCEEEECC
Confidence 799999754
No 197
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=98.70 E-value=1.3e-07 Score=84.88 Aligned_cols=76 Identities=11% Similarity=0.081 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHHcCCCCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCC
Q 042544 83 ESIKRHEHFLALQLGLKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMK 161 (305)
Q Consensus 83 ~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~ 161 (305)
...+...+.+...+... +.+|||++||+|.++..+++. ..+|+|+|+++.+++.+++++...++. +++++.+|+.+
T Consensus 190 ~~~e~l~~~v~~~~~~~-~~~vLDl~~G~G~~sl~la~~-~~~v~~vE~~~~ai~~a~~N~~~~~~~-~v~~~~~d~~~ 265 (362)
T PRK05031 190 AVNEKMLEWALDATKGS-KGDLLELYCGNGNFTLALARN-FRRVLATEISKPSVAAAQYNIAANGID-NVQIIRMSAEE 265 (362)
T ss_pred HHHHHHHHHHHHHhhcC-CCeEEEEeccccHHHHHHHhh-CCEEEEEECCHHHHHHHHHHHHHhCCC-cEEEEECCHHH
Confidence 33444455555554432 357999999999999988875 469999999999999999999888774 79999999976
No 198
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=98.70 E-value=1.4e-07 Score=84.22 Aligned_cols=74 Identities=11% Similarity=0.054 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHcCCCCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCC
Q 042544 85 IKRHEHFLALQLGLKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMK 161 (305)
Q Consensus 85 ~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~ 161 (305)
.....+.+...+...+ .+|||++||+|.++..+++. ..+|+|+|+++.+++.|++++...++. +++++.+|+.+
T Consensus 183 ~~~l~~~v~~~~~~~~-~~vlDl~~G~G~~sl~la~~-~~~v~~vE~~~~av~~a~~n~~~~~~~-~v~~~~~d~~~ 256 (353)
T TIGR02143 183 NIKMLEWACEVTQGSK-GDLLELYCGNGNFSLALAQN-FRRVLATEIAKPSVNAAQYNIAANNID-NVQIIRMSAEE 256 (353)
T ss_pred HHHHHHHHHHHhhcCC-CcEEEEeccccHHHHHHHHh-CCEEEEEECCHHHHHHHHHHHHHcCCC-cEEEEEcCHHH
Confidence 3444445555554333 47999999999999999876 469999999999999999999888874 69999999976
No 199
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=98.69 E-value=1.5e-07 Score=79.04 Aligned_cols=83 Identities=19% Similarity=0.213 Sum_probs=68.8
Q ss_pred HHHHHHHcCCCCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCC-
Q 042544 89 EHFLALQLGLKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDN- 167 (305)
Q Consensus 89 ~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~- 167 (305)
.+.+.+.+.+.++.+|||||+|.|.+|..|++. +.+|+++++++.+++..++... ..++++++++|+...+++.-
T Consensus 19 ~~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~-~~~v~aiEiD~~l~~~L~~~~~---~~~n~~vi~~DaLk~d~~~l~ 94 (259)
T COG0030 19 IDKIVEAANISPGDNVLEIGPGLGALTEPLLER-AARVTAIEIDRRLAEVLKERFA---PYDNLTVINGDALKFDFPSLA 94 (259)
T ss_pred HHHHHHhcCCCCCCeEEEECCCCCHHHHHHHhh-cCeEEEEEeCHHHHHHHHHhcc---cccceEEEeCchhcCcchhhc
Confidence 345556777888899999999999999999987 7889999999999999888764 24589999999999887642
Q ss_pred CeeEEEec
Q 042544 168 SFDAVYAI 175 (305)
Q Consensus 168 ~fD~v~~~ 175 (305)
.++.|+++
T Consensus 95 ~~~~vVaN 102 (259)
T COG0030 95 QPYKVVAN 102 (259)
T ss_pred CCCEEEEc
Confidence 56777764
No 200
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=98.68 E-value=5.4e-07 Score=72.56 Aligned_cols=96 Identities=25% Similarity=0.237 Sum_probs=76.8
Q ss_pred eEEEEcCCCChHHHHHH-hhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEEeccccccc
Q 042544 103 KVLDVGCGIGGPLREIA-QFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIEATCHA 181 (305)
Q Consensus 103 ~vLDiGcG~G~~~~~l~-~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~ 181 (305)
+++|||+|.|.-++.++ ..|..+++.+|.+..-+...+..+...++. +++++++.+++ +....+||+|++..+-.
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~-nv~v~~~R~E~-~~~~~~fd~v~aRAv~~-- 126 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLS-NVEVINGRAEE-PEYRESFDVVTARAVAP-- 126 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-S-SEEEEES-HHH-TTTTT-EEEEEEESSSS--
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCC-CEEEEEeeecc-cccCCCccEEEeehhcC--
Confidence 89999999999999998 678899999999999999999988888986 79999999998 44568899999876532
Q ss_pred CChhhhhhcCCCCCcccHHHHHHHHHhCCceEEE
Q 042544 182 PDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIW 215 (305)
Q Consensus 182 ~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~ 215 (305)
... .+.-+...|++||.+++.
T Consensus 127 --l~~-----------l~~~~~~~l~~~G~~l~~ 147 (184)
T PF02527_consen 127 --LDK-----------LLELARPLLKPGGRLLAY 147 (184)
T ss_dssp --HHH-----------HHHHHGGGEEEEEEEEEE
T ss_pred --HHH-----------HHHHHHHhcCCCCEEEEE
Confidence 211 366667778899988774
No 201
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=98.63 E-value=7e-08 Score=75.61 Aligned_cols=73 Identities=26% Similarity=0.463 Sum_probs=55.8
Q ss_pred eEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCC--CCCCC-eeEEEecc
Q 042544 103 KVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMP--FPDNS-FDAVYAIE 176 (305)
Q Consensus 103 ~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~-fD~v~~~~ 176 (305)
.|+|+.||.|..++.+|+. ..+|+++|+++..++.|+.+++-.|..++++++++|+.+.. +.... +|+|+++-
T Consensus 2 ~vlD~fcG~GGNtIqFA~~-~~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlSP 77 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFART-FDRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLSP 77 (163)
T ss_dssp EEEETT-TTSHHHHHHHHT-T-EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE--
T ss_pred EEEEeccCcCHHHHHHHHh-CCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEECC
Confidence 6999999999999999986 67999999999999999999999998889999999998732 22222 89999754
No 202
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=98.63 E-value=3.7e-08 Score=79.47 Aligned_cols=106 Identities=21% Similarity=0.187 Sum_probs=73.4
Q ss_pred CCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCC-CC---CCCCCeeEEEec
Q 042544 100 SGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMK-MP---FPDNSFDAVYAI 175 (305)
Q Consensus 100 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~-~~---~~~~~fD~v~~~ 175 (305)
++.++||+-||||.++++...+...+|+.||.++..+...+++++..+...++.++..|+.. ++ ....+||+|++-
T Consensus 42 ~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIflD 121 (183)
T PF03602_consen 42 EGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIFLD 121 (183)
T ss_dssp TT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEEE-
T ss_pred CCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEEEC
Confidence 78999999999999999988765679999999999999999999999887779999999654 21 146789999874
Q ss_pred ccccccCChhhhhhcCCCCCcccHHHHH--HHHHhCCceEEEe
Q 042544 176 EATCHAPDAAEIEIGDGLPDIRSTRKCL--EALKQAGFEVIWE 216 (305)
Q Consensus 176 ~~l~~~~~~~~~~~~~~~~~~~~l~~~~--~~L~~gG~~~i~~ 216 (305)
--...-..... .+..+. .+|+++|.+++..
T Consensus 122 PPY~~~~~~~~-----------~l~~l~~~~~l~~~~~ii~E~ 153 (183)
T PF03602_consen 122 PPYAKGLYYEE-----------LLELLAENNLLNEDGLIIIEH 153 (183)
T ss_dssp -STTSCHHHHH-----------HHHHHHHTTSEEEEEEEEEEE
T ss_pred CCcccchHHHH-----------HHHHHHHCCCCCCCEEEEEEe
Confidence 32221110011 344444 5677888777765
No 203
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=98.63 E-value=8.6e-07 Score=73.74 Aligned_cols=85 Identities=21% Similarity=0.280 Sum_probs=73.5
Q ss_pred HHHHHHcCCCCCCeEEEEcCCCChHHHHHHhh--cCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCC--C
Q 042544 90 HFLALQLGLKSGQKVLDVGCGIGGPLREIAQF--SSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPF--P 165 (305)
Q Consensus 90 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~--~ 165 (305)
.++...+.+.||.+|||-|+|+|.++..+++. |-++++.+|+-..-.+.|++..+..++.+++++.+-|+....| .
T Consensus 95 a~I~~~L~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF~~k 174 (314)
T KOG2915|consen 95 AMILSMLEIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGFLIK 174 (314)
T ss_pred HHHHHHhcCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCcccc
Confidence 34556788999999999999999999999964 5689999999999999999999999999999999999987444 3
Q ss_pred CCCeeEEEe
Q 042544 166 DNSFDAVYA 174 (305)
Q Consensus 166 ~~~fD~v~~ 174 (305)
+..+|+|+.
T Consensus 175 s~~aDaVFL 183 (314)
T KOG2915|consen 175 SLKADAVFL 183 (314)
T ss_pred ccccceEEE
Confidence 567899876
No 204
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=98.62 E-value=1.5e-07 Score=84.11 Aligned_cols=113 Identities=18% Similarity=0.192 Sum_probs=82.2
Q ss_pred CCCeEEEEcCCCChHHHHHHhhcCC-eEEEEcCCHHHHHHHHHHHHhcCCC-CCeEEEEcCCCCC-C---CCCCCeeEEE
Q 042544 100 SGQKVLDVGCGIGGPLREIAQFSST-SVTGLNNNEYQITRGKELNRFAGVD-KTCNFVKADFMKM-P---FPDNSFDAVY 173 (305)
Q Consensus 100 ~~~~vLDiGcG~G~~~~~l~~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~-~~~~~~~~d~~~~-~---~~~~~fD~v~ 173 (305)
.|.+|||+-|=||.++++.+.. |+ +|++||+|...++.|+++++-+|+. .++.++++|+.++ . -...+||+|+
T Consensus 217 ~GkrvLNlFsYTGgfSv~Aa~g-GA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlIi 295 (393)
T COG1092 217 AGKRVLNLFSYTGGFSVHAALG-GASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLII 295 (393)
T ss_pred cCCeEEEecccCcHHHHHHHhc-CCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcccEEE
Confidence 4899999999999999999975 55 9999999999999999999999874 4689999999873 1 2235899998
Q ss_pred eccc-ccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 174 AIEA-TCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 174 ~~~~-l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
.--. +.--+... .....++ ...+..+.++|+|||.+++.+
T Consensus 296 lDPPsF~r~k~~~-~~~~rdy--~~l~~~~~~iL~pgG~l~~~s 336 (393)
T COG1092 296 LDPPSFARSKKQE-FSAQRDY--KDLNDLALRLLAPGGTLVTSS 336 (393)
T ss_pred ECCcccccCcccc-hhHHHHH--HHHHHHHHHHcCCCCEEEEEe
Confidence 6211 10000000 0000000 125788899999999999875
No 205
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.62 E-value=4e-07 Score=74.11 Aligned_cols=108 Identities=19% Similarity=0.269 Sum_probs=85.6
Q ss_pred HcCCCCCCeEEEEcCCCChHHHHHHhh--cCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCC-C-----CCCC
Q 042544 95 QLGLKSGQKVLDVGCGIGGPLREIAQF--SSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMK-M-----PFPD 166 (305)
Q Consensus 95 ~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~-~-----~~~~ 166 (305)
++.+-..+++||||.=||..++.+|.. .+++|+++|+++...+.+.+..+..|...+++++++++.+ + ..+.
T Consensus 68 li~~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~ 147 (237)
T KOG1663|consen 68 LIRLLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLADGES 147 (237)
T ss_pred HHHHhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHhcCCC
Confidence 344446789999999999998888843 3689999999999999999999999999999999999876 2 1346
Q ss_pred CCeeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 167 NSFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 167 ~~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
++||+++.- |..+... ....++.+++++||.+++..
T Consensus 148 ~tfDfaFvD----adK~nY~----------~y~e~~l~Llr~GGvi~~DN 183 (237)
T KOG1663|consen 148 GTFDFAFVD----ADKDNYS----------NYYERLLRLLRVGGVIVVDN 183 (237)
T ss_pred CceeEEEEc----cchHHHH----------HHHHHHHhhcccccEEEEec
Confidence 889999853 3332222 15889999999999888853
No 206
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=98.60 E-value=1.2e-06 Score=78.20 Aligned_cols=127 Identities=24% Similarity=0.302 Sum_probs=91.1
Q ss_pred HHHcCCCCCCeEEEEcCCCChHHHHHHhhc---CCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCC--CCC-
Q 042544 93 ALQLGLKSGQKVLDVGCGIGGPLREIAQFS---STSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMP--FPD- 166 (305)
Q Consensus 93 ~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~---~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~--~~~- 166 (305)
...+.+.+|.+|||++++.|.=|.++++.. +..|+++|+++.-+...++++.+.|.. ++.++..|...++ .+.
T Consensus 149 a~~L~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~-nv~~~~~d~~~~~~~~~~~ 227 (355)
T COG0144 149 ALVLDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVR-NVIVVNKDARRLAELLPGG 227 (355)
T ss_pred HHHcCCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCC-ceEEEeccccccccccccc
Confidence 346888999999999999999999998652 356799999999999999999999986 4788888876543 222
Q ss_pred CCeeEEEe------cccccccCChhhhhhcC---CC--CCcccHHHHHHHHHhCCceEEEeccCC
Q 042544 167 NSFDAVYA------IEATCHAPDAAEIEIGD---GL--PDIRSTRKCLEALKQAGFEVIWEKDLA 220 (305)
Q Consensus 167 ~~fD~v~~------~~~l~~~~~~~~~~~~~---~~--~~~~~l~~~~~~L~~gG~~~i~~~~~~ 220 (305)
+.||.|+. .+++.--|+........ .+ -....+....+.|||||.++.++..+.
T Consensus 228 ~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~ 292 (355)
T COG0144 228 EKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSLT 292 (355)
T ss_pred CcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCCc
Confidence 35999995 23443334331000000 00 012368899999999999999886554
No 207
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=98.57 E-value=3.3e-07 Score=81.85 Aligned_cols=81 Identities=23% Similarity=0.352 Sum_probs=61.9
Q ss_pred ccHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcC
Q 042544 79 ESLRESIKRHEHFLALQLGLKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKAD 158 (305)
Q Consensus 79 ~~~~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d 158 (305)
+......+...+.+..+++..++ +|||+-||.|.+++.+|.. ..+|+|+|+++.+++.|++++...++. +++|+.++
T Consensus 176 QvN~~~~~~l~~~~~~~l~~~~~-~vlDlycG~G~fsl~la~~-~~~V~gvE~~~~av~~A~~Na~~N~i~-n~~f~~~~ 252 (352)
T PF05958_consen 176 QVNPEQNEKLYEQALEWLDLSKG-DVLDLYCGVGTFSLPLAKK-AKKVIGVEIVEEAVEDARENAKLNGID-NVEFIRGD 252 (352)
T ss_dssp -SBHHHHHHHHHHHHHHCTT-TT-EEEEES-TTTCCHHHHHCC-SSEEEEEES-HHHHHHHHHHHHHTT---SEEEEE--
T ss_pred cCcHHHHHHHHHHHHHHhhcCCC-cEEEEeecCCHHHHHHHhh-CCeEEEeeCCHHHHHHHHHHHHHcCCC-cceEEEee
Confidence 34445566667777788887766 8999999999999999976 689999999999999999999998875 79999887
Q ss_pred CCCC
Q 042544 159 FMKM 162 (305)
Q Consensus 159 ~~~~ 162 (305)
++++
T Consensus 253 ~~~~ 256 (352)
T PF05958_consen 253 AEDF 256 (352)
T ss_dssp SHHC
T ss_pred ccch
Confidence 7543
No 208
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=98.57 E-value=1e-06 Score=76.96 Aligned_cols=130 Identities=12% Similarity=0.087 Sum_probs=91.3
Q ss_pred CCCccHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCCChHHHHHHhh-----cCCeEEEEcCCHHHHHHHHHHHHhcCCC-
Q 042544 76 WKGESLRESIKRHEHFLALQLGLKSGQKVLDVGCGIGGPLREIAQF-----SSTSVTGLNNNEYQITRGKELNRFAGVD- 149 (305)
Q Consensus 76 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-----~~~~v~gvD~s~~~l~~a~~~~~~~~~~- 149 (305)
|..+.-...++.+...+...+ .++..|+|+|||+|.-+..|.+. ...+++++|+|..+|+.+.+++.....+
T Consensus 54 Yptr~E~~iL~~~~~~Ia~~i--~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~ 131 (319)
T TIGR03439 54 YLTNDEIEILKKHSSDIAASI--PSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSH 131 (319)
T ss_pred CChHHHHHHHHHHHHHHHHhc--CCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCC
Confidence 344444555666666666654 46679999999999987776532 1468999999999999999888732222
Q ss_pred CCeEEEEcCCCCC----CC--CCCCeeEEEecc-cccccCChhhhhhcCCCCCcccHHHHHH-HHHhCCceEEEe
Q 042544 150 KTCNFVKADFMKM----PF--PDNSFDAVYAIE-ATCHAPDAAEIEIGDGLPDIRSTRKCLE-ALKQAGFEVIWE 216 (305)
Q Consensus 150 ~~~~~~~~d~~~~----~~--~~~~fD~v~~~~-~l~~~~~~~~~~~~~~~~~~~~l~~~~~-~L~~gG~~~i~~ 216 (305)
-.+.-+++|+.+. +- ......+++..+ ++..++..+... +++++++ .|+|||.++|..
T Consensus 132 l~v~~l~gdy~~~l~~l~~~~~~~~~r~~~flGSsiGNf~~~ea~~---------fL~~~~~~~l~~~d~lLiG~ 197 (319)
T TIGR03439 132 VRCAGLLGTYDDGLAWLKRPENRSRPTTILWLGSSIGNFSRPEAAA---------FLAGFLATALSPSDSFLIGL 197 (319)
T ss_pred eEEEEEEecHHHHHhhcccccccCCccEEEEeCccccCCCHHHHHH---------HHHHHHHhhCCCCCEEEEec
Confidence 2344488888652 21 123356666554 788888877654 7999999 999999998864
No 209
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=98.54 E-value=5.8e-07 Score=72.85 Aligned_cols=89 Identities=21% Similarity=0.277 Sum_probs=68.0
Q ss_pred CeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCC---CCCeeEEEecccc
Q 042544 102 QKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFP---DNSFDAVYAIEAT 178 (305)
Q Consensus 102 ~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~---~~~fD~v~~~~~l 178 (305)
.++|||||=+......-. .-..|+.||+++. .-.+.+.|+.+.|.| ++.||+|.++.|+
T Consensus 53 lrlLEVGals~~N~~s~~--~~fdvt~IDLns~----------------~~~I~qqDFm~rplp~~~~e~FdvIs~SLVL 114 (219)
T PF11968_consen 53 LRLLEVGALSTDNACSTS--GWFDVTRIDLNSQ----------------HPGILQQDFMERPLPKNESEKFDVISLSLVL 114 (219)
T ss_pred ceEEeecccCCCCccccc--CceeeEEeecCCC----------------CCCceeeccccCCCCCCcccceeEEEEEEEE
Confidence 699999986544333322 2356999999762 235678899887764 6789999999999
Q ss_pred cccCChhhhhhcCCCCCcccHHHHHHHHHhCCc-----eEEEe
Q 042544 179 CHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGF-----EVIWE 216 (305)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~-----~~i~~ 216 (305)
.++|++... ...+..+.+.|+|+|. +++..
T Consensus 115 NfVP~p~~R--------G~Ml~r~~~fL~~~g~~~~~~LFlVl 149 (219)
T PF11968_consen 115 NFVPDPKQR--------GEMLRRAHKFLKPPGLSLFPSLFLVL 149 (219)
T ss_pred eeCCCHHHH--------HHHHHHHHHHhCCCCccCcceEEEEe
Confidence 999998664 2369999999999999 77753
No 210
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=98.53 E-value=6.4e-07 Score=76.86 Aligned_cols=111 Identities=20% Similarity=0.216 Sum_probs=83.3
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHhhc-CCeEEEEcCCHHHHHHHHHHHHhcC--C-CCCeEEEEcCCCCC-CCCCCCeeE
Q 042544 97 GLKSGQKVLDVGCGIGGPLREIAQFS-STSVTGLNNNEYQITRGKELNRFAG--V-DKTCNFVKADFMKM-PFPDNSFDA 171 (305)
Q Consensus 97 ~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~--~-~~~~~~~~~d~~~~-~~~~~~fD~ 171 (305)
...+ .+||-||.|.|.+++.+.++. -.+++.|||++..++.+++.+.... . +++++++..|..++ .-...+||+
T Consensus 74 h~~p-k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDv 152 (282)
T COG0421 74 HPNP-KRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDV 152 (282)
T ss_pred CCCC-CeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCE
Confidence 3344 699999999999999999763 4799999999999999999876543 2 47899999999873 222347999
Q ss_pred EEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEE
Q 042544 172 VYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIW 215 (305)
Q Consensus 172 v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~ 215 (305)
|++-..=. . .....+-...+++.++++|+++|.++..
T Consensus 153 Ii~D~tdp-~------gp~~~Lft~eFy~~~~~~L~~~Gi~v~q 189 (282)
T COG0421 153 IIVDSTDP-V------GPAEALFTEEFYEGCRRALKEDGIFVAQ 189 (282)
T ss_pred EEEcCCCC-C------CcccccCCHHHHHHHHHhcCCCcEEEEe
Confidence 98743322 1 1112233344799999999999999886
No 211
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=98.52 E-value=9.6e-07 Score=77.82 Aligned_cols=129 Identities=19% Similarity=0.259 Sum_probs=81.9
Q ss_pred HHHHHHHHcCCCCCCeEEEEcCCCChHHHHHHhh--------cCCeEEEEcCCHHHHHHHHHHHHhcCCCC-CeEEEEcC
Q 042544 88 HEHFLALQLGLKSGQKVLDVGCGIGGPLREIAQF--------SSTSVTGLNNNEYQITRGKELNRFAGVDK-TCNFVKAD 158 (305)
Q Consensus 88 ~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~--------~~~~v~gvD~s~~~l~~a~~~~~~~~~~~-~~~~~~~d 158 (305)
..+++...+...++.+|||.+||+|.++..+.++ ....++|+|+++.++..|+.++.-.+... ...+..+|
T Consensus 34 i~~l~~~~~~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~d 113 (311)
T PF02384_consen 34 IVDLMVKLLNPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQGD 113 (311)
T ss_dssp HHHHHHHHHTT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES-
T ss_pred HHHHHHhhhhccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccccccccccccc
Confidence 3455666677788889999999999999887752 46899999999999999988765555432 24588888
Q ss_pred CCCCCCC--CCCeeEEEeccccccc--CChhhhh---hcCCC-----CCcccHHHHHHHHHhCCceEEEe
Q 042544 159 FMKMPFP--DNSFDAVYAIEATCHA--PDAAEIE---IGDGL-----PDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 159 ~~~~~~~--~~~fD~v~~~~~l~~~--~~~~~~~---~~~~~-----~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
....+.. ...||+|++.-.+... .+..... +.... ....++..+.+.|++||.+.+..
T Consensus 114 ~l~~~~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Il 183 (311)
T PF02384_consen 114 SLENDKFIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIIL 183 (311)
T ss_dssp TTTSHSCTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred cccccccccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEe
Confidence 7654332 4789999997644333 2111110 11111 11236788999999999877654
No 212
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=98.52 E-value=8.6e-07 Score=77.58 Aligned_cols=103 Identities=24% Similarity=0.190 Sum_probs=86.4
Q ss_pred CCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEEecccc
Q 042544 99 KSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIEAT 178 (305)
Q Consensus 99 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l 178 (305)
.+|.+|||+=||-|.+++.+|.....+|+++|++|..++..++++..+++...+..+++|....+..-+.+|-|++...-
T Consensus 187 ~~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~~~aDrIim~~p~ 266 (341)
T COG2520 187 KEGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPELGVADRIIMGLPK 266 (341)
T ss_pred cCCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhccccCCEEEeCCCC
Confidence 46999999999999999999986445599999999999999999999999878999999999876544789999875432
Q ss_pred cccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 179 CHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
.... ++..+.+.+++||++.+.+
T Consensus 267 ----~a~~-----------fl~~A~~~~k~~g~iHyy~ 289 (341)
T COG2520 267 ----SAHE-----------FLPLALELLKDGGIIHYYE 289 (341)
T ss_pred ----cchh-----------hHHHHHHHhhcCcEEEEEe
Confidence 2222 5888999999999888876
No 213
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=98.51 E-value=1e-06 Score=70.20 Aligned_cols=122 Identities=18% Similarity=0.133 Sum_probs=88.4
Q ss_pred HHHHHHHHHHHcCC--CCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCC
Q 042544 85 IKRHEHFLALQLGL--KSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKM 162 (305)
Q Consensus 85 ~~~~~~~l~~~~~~--~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~ 162 (305)
..+..+.+..++.. -.|.++||+-+|+|.++.+.+.+....++.||.+...+...+++++..+...+++++..|+...
T Consensus 26 ~drVREalFNil~~~~i~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~ 105 (187)
T COG0742 26 TDRVREALFNILAPDEIEGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRA 105 (187)
T ss_pred chHHHHHHHHhccccccCCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHH
Confidence 34445556666654 4789999999999999999987657899999999999999999999998778899999999852
Q ss_pred -C-CC-CCCeeEEEecccccc-cCChhhhhhcCCCCCcccHHH--HHHHHHhCCceEEEec
Q 042544 163 -P-FP-DNSFDAVYAIEATCH-APDAAEIEIGDGLPDIRSTRK--CLEALKQAGFEVIWEK 217 (305)
Q Consensus 163 -~-~~-~~~fD~v~~~~~l~~-~~~~~~~~~~~~~~~~~~l~~--~~~~L~~gG~~~i~~~ 217 (305)
+ .. .+.||+|+.---++. +.+... .+.. -..+|+|+|.+++...
T Consensus 106 L~~~~~~~~FDlVflDPPy~~~l~~~~~-----------~~~~~~~~~~L~~~~~iv~E~~ 155 (187)
T COG0742 106 LKQLGTREPFDLVFLDPPYAKGLLDKEL-----------ALLLLEENGWLKPGALIVVEHD 155 (187)
T ss_pred HHhcCCCCcccEEEeCCCCccchhhHHH-----------HHHHHHhcCCcCCCcEEEEEeC
Confidence 1 22 224999987543331 111011 1222 3466899998888754
No 214
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.51 E-value=2.6e-06 Score=66.72 Aligned_cols=111 Identities=19% Similarity=0.228 Sum_probs=76.6
Q ss_pred CCeEEEEcCCCChHHHHHHhh--cCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEEecccc
Q 042544 101 GQKVLDVGCGIGGPLREIAQF--SSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIEAT 178 (305)
Q Consensus 101 ~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l 178 (305)
...+||||||+|..+..++.. ++..+.++|++|.+++...+.+...+. +++.++.|+... +..++.|+++.+--
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~--~~~~V~tdl~~~-l~~~~VDvLvfNPP- 119 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRV--HIDVVRTDLLSG-LRNESVDVLVFNPP- 119 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCC--ccceeehhHHhh-hccCCccEEEECCC-
Confidence 568999999999999999854 567899999999999988887776654 478999999873 23488999886542
Q ss_pred cccCChhh------h--hhcCCCCCc----ccHHHHHHHHHhCCceEEEe
Q 042544 179 CHAPDAAE------I--EIGDGLPDI----RSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 179 ~~~~~~~~------~--~~~~~~~~~----~~l~~~~~~L~~gG~~~i~~ 216 (305)
++|.+.. + ....|..-. +++..+-.+|.|.|.+++..
T Consensus 120 -YVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~ 168 (209)
T KOG3191|consen 120 -YVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVA 168 (209)
T ss_pred -cCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeee
Confidence 2222110 0 011111111 24556667788999887754
No 215
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=98.50 E-value=6.6e-07 Score=75.48 Aligned_cols=164 Identities=21% Similarity=0.194 Sum_probs=95.6
Q ss_pred CCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCC---------------------------CC
Q 042544 99 KSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVD---------------------------KT 151 (305)
Q Consensus 99 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~---------------------------~~ 151 (305)
.+|.++||||||+-..-..-+...-.+++..|.++..++..++.++..+.- ..
T Consensus 55 ~~g~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~~ 134 (256)
T PF01234_consen 55 VKGETLLDIGSGPTIYQLLSACEWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRRA 134 (256)
T ss_dssp S-EEEEEEES-TT--GGGTTGGGTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCcHHHhhhhHHHhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHHh
Confidence 357899999999854433323222468999999998888777665433210 01
Q ss_pred e-EEEEcCCCCC-CCCC-----CCeeEEEecccccccC-ChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEeccCCCCC
Q 042544 152 C-NFVKADFMKM-PFPD-----NSFDAVYAIEATCHAP-DAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEKDLAPDS 223 (305)
Q Consensus 152 ~-~~~~~d~~~~-~~~~-----~~fD~v~~~~~l~~~~-~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~~~~~~~~ 223 (305)
| .++..|+... |+.. .+||+|++.+.++..- +.+.. ...++++.++|||||.+++... .
T Consensus 135 Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y--------~~al~ni~~lLkpGG~Lil~~~-----l 201 (256)
T PF01234_consen 135 VKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEY--------RRALRNISSLLKPGGHLILAGV-----L 201 (256)
T ss_dssp EEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHH--------HHHHHHHHTTEEEEEEEEEEEE-----S
T ss_pred hceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHH--------HHHHHHHHHHcCCCcEEEEEEE-----c
Confidence 2 4777888763 3332 3599999999988764 44332 2269999999999999998752 1
Q ss_pred CCCCccccCCCcccccccccchhHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHhcCCc---ccccccceEEEEE
Q 042544 224 PLPWYLPLDTSHFSLSSFRLTSVGRFVTRNMVKALEFVGLAPKGSQRVQDFLEKAAEGLAAGGR---KEIFTPMYFFLAR 300 (305)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---~~~~~~~~~~~ar 300 (305)
...+|..... .. ...+.+.+.+...++++|+.+..... ..-+..+.+++||
T Consensus 202 ~~t~Y~vG~~--------~F------------------~~l~l~ee~v~~al~~aG~~i~~~~~~~~~~d~~~~~f~~a~ 255 (256)
T PF01234_consen 202 GSTYYMVGGH--------KF------------------PCLPLNEEFVREALEEAGFDIEDLEKQSKVSDYEGMFFLVAR 255 (256)
T ss_dssp S-SEEEETTE--------EE------------------E---B-HHHHHHHHHHTTEEEEEEEG-TTTB---EEEEEEEE
T ss_pred CceeEEECCE--------ec------------------ccccCCHHHHHHHHHHcCCEEEecccccCcCCCCcEEEEEEe
Confidence 1122222111 11 11234556788888888887766442 1124455789999
Q ss_pred c
Q 042544 301 K 301 (305)
Q Consensus 301 K 301 (305)
|
T Consensus 256 K 256 (256)
T PF01234_consen 256 K 256 (256)
T ss_dssp E
T ss_pred C
Confidence 8
No 216
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=98.49 E-value=2e-06 Score=66.63 Aligned_cols=82 Identities=22% Similarity=0.319 Sum_probs=63.7
Q ss_pred CCCCeEEEEcCCCChHHHHHHh-----hcCCeEEEEcCCHHHHHHHHHHHHhcC--CCCCeEEEEcCCCCCCCCCCCeeE
Q 042544 99 KSGQKVLDVGCGIGGPLREIAQ-----FSSTSVTGLNNNEYQITRGKELNRFAG--VDKTCNFVKADFMKMPFPDNSFDA 171 (305)
Q Consensus 99 ~~~~~vLDiGcG~G~~~~~l~~-----~~~~~v~gvD~s~~~l~~a~~~~~~~~--~~~~~~~~~~d~~~~~~~~~~fD~ 171 (305)
.+..+|+|+|||.|.++..++. .++.+|+|+|.++..++.+.++....+ ...+..+..++....+. ....++
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 102 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADESS-SDPPDI 102 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhcc-cCCCeE
Confidence 5678999999999999999998 568999999999999999999888776 44567777776654322 455678
Q ss_pred EEeccccccc
Q 042544 172 VYAIEATCHA 181 (305)
Q Consensus 172 v~~~~~l~~~ 181 (305)
++..++=..+
T Consensus 103 ~vgLHaCG~L 112 (141)
T PF13679_consen 103 LVGLHACGDL 112 (141)
T ss_pred EEEeecccch
Confidence 8776554433
No 217
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=98.48 E-value=2.9e-07 Score=77.94 Aligned_cols=110 Identities=19% Similarity=0.215 Sum_probs=78.4
Q ss_pred CCCeEEEEcCCCChHHHHHHhhc-CCeEEEEcCCHHHHHHHHHHHHhcCC---CCCeEEEEcCCCCC-CCCCC-CeeEEE
Q 042544 100 SGQKVLDVGCGIGGPLREIAQFS-STSVTGLNNNEYQITRGKELNRFAGV---DKTCNFVKADFMKM-PFPDN-SFDAVY 173 (305)
Q Consensus 100 ~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~---~~~~~~~~~d~~~~-~~~~~-~fD~v~ 173 (305)
...+||=||.|.|..+..+.+.+ ..+|+.||+++.+++.|++.+..... .++++++.+|+..+ .-..+ +||+|+
T Consensus 76 ~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvIi 155 (246)
T PF01564_consen 76 NPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVII 155 (246)
T ss_dssp ST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEEE
T ss_pred CcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEEE
Confidence 56799999999999999999764 47999999999999999997654321 46899999999762 22234 899998
Q ss_pred ecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 174 AIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 174 ~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
.-..-...+... +-...+++.+++.|+|+|.+++..
T Consensus 156 ~D~~dp~~~~~~-------l~t~ef~~~~~~~L~~~Gv~v~~~ 191 (246)
T PF01564_consen 156 VDLTDPDGPAPN-------LFTREFYQLCKRRLKPDGVLVLQA 191 (246)
T ss_dssp EESSSTTSCGGG-------GSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred EeCCCCCCCccc-------ccCHHHHHHHHhhcCCCcEEEEEc
Confidence 743221111111 112337999999999999998865
No 218
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.48 E-value=3.4e-06 Score=82.12 Aligned_cols=88 Identities=24% Similarity=0.308 Sum_probs=70.7
Q ss_pred HHHHHHcCC-CCCCeEEEEcCCCChHHHHHHhh-----c--------------------------------------CCe
Q 042544 90 HFLALQLGL-KSGQKVLDVGCGIGGPLREIAQF-----S--------------------------------------STS 125 (305)
Q Consensus 90 ~~l~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~-----~--------------------------------------~~~ 125 (305)
..++...+. .++..++|.+||+|.++++.+.. | ..+
T Consensus 179 aa~l~~a~w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~ 258 (702)
T PRK11783 179 AAILLRSGWPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSK 258 (702)
T ss_pred HHHHHHcCCCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCce
Confidence 444445554 56789999999999999987631 1 136
Q ss_pred EEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCC--CCCeeEEEeccc
Q 042544 126 VTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFP--DNSFDAVYAIEA 177 (305)
Q Consensus 126 v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~--~~~fD~v~~~~~ 177 (305)
++|+|+++.+++.|++++...|+.+.+++.++|+.+++.+ .++||+|+++--
T Consensus 259 i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPP 312 (702)
T PRK11783 259 FYGSDIDPRVIQAARKNARRAGVAELITFEVKDVADLKNPLPKGPTGLVISNPP 312 (702)
T ss_pred EEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhhcccccccCCCCEEEECCC
Confidence 9999999999999999999999987899999999887544 357999998754
No 219
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=98.47 E-value=6.4e-07 Score=73.44 Aligned_cols=116 Identities=16% Similarity=0.097 Sum_probs=77.1
Q ss_pred EEEEcCCCChHHHHHHhh-cCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCC-CeeEEEeccc----
Q 042544 104 VLDVGCGIGGPLREIAQF-SSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDN-SFDAVYAIEA---- 177 (305)
Q Consensus 104 vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~-~fD~v~~~~~---- 177 (305)
|.||||..|.+...|.+. ...+++++|+++..++.|++++...++.+++++..+|... +++.+ ..|.|+..++
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~-~l~~~e~~d~ivIAGMGG~l 79 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLE-VLKPGEDVDTIVIAGMGGEL 79 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGG-G--GGG---EEEEEEE-HHH
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCccc-ccCCCCCCCEEEEecCCHHH
Confidence 689999999999999965 3358999999999999999999999998999999999765 23333 3788886553
Q ss_pred ----ccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEeccCC
Q 042544 178 ----TCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEKDLA 220 (305)
Q Consensus 178 ----l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~~~~~ 220 (305)
+...++.......--+.+..-...++++|...|+.++.+..+.
T Consensus 80 I~~ILe~~~~~~~~~~~lILqP~~~~~~LR~~L~~~gf~I~~E~lv~ 126 (205)
T PF04816_consen 80 IIEILEAGPEKLSSAKRLILQPNTHAYELRRWLYENGFEIIDEDLVE 126 (205)
T ss_dssp HHHHHHHTGGGGTT--EEEEEESS-HHHHHHHHHHTTEEEEEEEEEE
T ss_pred HHHHHHhhHHHhccCCeEEEeCCCChHHHHHHHHHCCCEEEEeEEEe
Confidence 1111111000000012233458889999999999988775443
No 220
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=98.46 E-value=2e-06 Score=74.13 Aligned_cols=83 Identities=22% Similarity=0.280 Sum_probs=55.3
Q ss_pred CCCeEEEEcCCCChHHHHHHhh-c-CCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCC-CCCCCCCeeEEEecc
Q 042544 100 SGQKVLDVGCGIGGPLREIAQF-S-STSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMK-MPFPDNSFDAVYAIE 176 (305)
Q Consensus 100 ~~~~vLDiGcG~G~~~~~l~~~-~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~fD~v~~~~ 176 (305)
...+|||+|||+|..+..+.+. + -.+++++|.|+.|++.++..+.................+ .++ ...|+|++.+
T Consensus 33 ~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~DLvi~s~ 110 (274)
T PF09243_consen 33 RPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRRVLYRDFLPF--PPDDLVIASY 110 (274)
T ss_pred CCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccchhhhhhhcccccC--CCCcEEEEeh
Confidence 4569999999999866655542 2 368999999999999998877654221111111111111 222 2239999999
Q ss_pred cccccCCh
Q 042544 177 ATCHAPDA 184 (305)
Q Consensus 177 ~l~~~~~~ 184 (305)
+|..+++.
T Consensus 111 ~L~EL~~~ 118 (274)
T PF09243_consen 111 VLNELPSA 118 (274)
T ss_pred hhhcCCch
Confidence 99999884
No 221
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=98.45 E-value=6.8e-06 Score=67.42 Aligned_cols=97 Identities=24% Similarity=0.295 Sum_probs=76.2
Q ss_pred CCeEEEEcCCCChHHHHHH-hhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCC-eeEEEecccc
Q 042544 101 GQKVLDVGCGIGGPLREIA-QFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNS-FDAVYAIEAT 178 (305)
Q Consensus 101 ~~~vLDiGcG~G~~~~~l~-~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~-fD~v~~~~~l 178 (305)
+.+++|||+|.|.-++.+| ..|+.+|+-+|....-+...+......+++ +++++++.++++.-. .. ||+|++..+.
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~-nv~i~~~RaE~~~~~-~~~~D~vtsRAva 145 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLE-NVEIVHGRAEEFGQE-KKQYDVVTSRAVA 145 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCCC-CeEEehhhHhhcccc-cccCcEEEeehcc
Confidence 5899999999999999998 678889999999999988888888888875 799999999986532 23 9999987543
Q ss_pred cccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEE
Q 042544 179 CHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVI 214 (305)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i 214 (305)
. ... ...-+..++++||.++.
T Consensus 146 ~----L~~-----------l~e~~~pllk~~g~~~~ 166 (215)
T COG0357 146 S----LNV-----------LLELCLPLLKVGGGFLA 166 (215)
T ss_pred c----hHH-----------HHHHHHHhcccCCcchh
Confidence 2 111 24455677888887654
No 222
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=98.44 E-value=3e-07 Score=82.96 Aligned_cols=81 Identities=16% Similarity=0.237 Sum_probs=70.3
Q ss_pred ccHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcC
Q 042544 79 ESLRESIKRHEHFLALQLGLKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKAD 158 (305)
Q Consensus 79 ~~~~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d 158 (305)
+....+.+.....+.++++++.+..+||+.||||.+++.+++. -.+|+|+++++..++-|+.++...|+. +++|+++-
T Consensus 362 Q~Nt~~aevLys~i~e~~~l~~~k~llDv~CGTG~iglala~~-~~~ViGvEi~~~aV~dA~~nA~~Ngis-Na~Fi~gq 439 (534)
T KOG2187|consen 362 QTNTSAAEVLYSTIGEWAGLPADKTLLDVCCGTGTIGLALARG-VKRVIGVEISPDAVEDAEKNAQINGIS-NATFIVGQ 439 (534)
T ss_pred ccCcHHHHHHHHHHHHHhCCCCCcEEEEEeecCCceehhhhcc-ccceeeeecChhhcchhhhcchhcCcc-ceeeeecc
Confidence 3445556666777888999999999999999999999999975 689999999999999999999998875 89999997
Q ss_pred CCC
Q 042544 159 FMK 161 (305)
Q Consensus 159 ~~~ 161 (305)
+++
T Consensus 440 aE~ 442 (534)
T KOG2187|consen 440 AED 442 (534)
T ss_pred hhh
Confidence 666
No 223
>PRK00536 speE spermidine synthase; Provisional
Probab=98.43 E-value=1.7e-06 Score=73.39 Aligned_cols=98 Identities=15% Similarity=0.119 Sum_probs=73.6
Q ss_pred CCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcC---CCCCeEEEEcCCCCCCCCCCCeeEEEec
Q 042544 99 KSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAG---VDKTCNFVKADFMKMPFPDNSFDAVYAI 175 (305)
Q Consensus 99 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~---~~~~~~~~~~d~~~~~~~~~~fD~v~~~ 175 (305)
+...+||=||.|.|..++++.+++ .+|+-|||++.+++.+++.+.... -+++++++.. +.+ -..++||+|++-
T Consensus 71 ~~pk~VLIiGGGDGg~~REvLkh~-~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~-~~~--~~~~~fDVIIvD 146 (262)
T PRK00536 71 KELKEVLIVDGFDLELAHQLFKYD-THVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ-LLD--LDIKKYDLIICL 146 (262)
T ss_pred CCCCeEEEEcCCchHHHHHHHCcC-CeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh-hhh--ccCCcCCEEEEc
Confidence 345799999999999999999875 499999999999999999554321 2457777752 211 123689999975
Q ss_pred ccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 176 EATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 176 ~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
.. +++. +.+.++++|+|||.++...
T Consensus 147 s~----~~~~------------fy~~~~~~L~~~Gi~v~Qs 171 (262)
T PRK00536 147 QE----PDIH------------KIDGLKRMLKEDGVFISVA 171 (262)
T ss_pred CC----CChH------------HHHHHHHhcCCCcEEEECC
Confidence 32 2222 5889999999999998853
No 224
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=98.42 E-value=4.9e-07 Score=77.65 Aligned_cols=113 Identities=19% Similarity=0.314 Sum_probs=75.5
Q ss_pred CCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCC-CCeEEEEcCCCCC-C-C-CCCCeeEEEe
Q 042544 99 KSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVD-KTCNFVKADFMKM-P-F-PDNSFDAVYA 174 (305)
Q Consensus 99 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~-~~~~~~~~d~~~~-~-~-~~~~fD~v~~ 174 (305)
..+.+|||+-|=||.+++..+.....+|+.||.|..+++.+++++..+++. .++++++.|+.+. . . ..++||+|++
T Consensus 122 ~~gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~~~~fD~IIl 201 (286)
T PF10672_consen 122 AKGKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKKGGRFDLIIL 201 (286)
T ss_dssp CTTCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHHTT-EEEEEE
T ss_pred cCCCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhcCCCCCEEEE
Confidence 367899999999999999887653358999999999999999999998875 5789999999762 1 1 2468999997
Q ss_pred cccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 175 IEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 175 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
--.-. ......+. .++ ...+..+.++|+|||.+++..
T Consensus 202 DPPsF-~k~~~~~~--~~y--~~L~~~a~~ll~~gG~l~~~s 238 (286)
T PF10672_consen 202 DPPSF-AKSKFDLE--RDY--KKLLRRAMKLLKPGGLLLTCS 238 (286)
T ss_dssp --SSE-ESSTCEHH--HHH--HHHHHHHHHTEEEEEEEEEEE
T ss_pred CCCCC-CCCHHHHH--HHH--HHHHHHHHHhcCCCCEEEEEc
Confidence 32100 01100000 000 114677888899999987754
No 225
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=98.41 E-value=6.3e-07 Score=75.48 Aligned_cols=107 Identities=20% Similarity=0.252 Sum_probs=67.4
Q ss_pred CeEEEEcCC--CChHHHHHHh--hcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCC-----------CCC
Q 042544 102 QKVLDVGCG--IGGPLREIAQ--FSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMP-----------FPD 166 (305)
Q Consensus 102 ~~vLDiGcG--~G~~~~~l~~--~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~~~ 166 (305)
...|||||| |-..+.++++ .|.++|+-+|..|..+..++..+..... ....++++|+.+.. +.-
T Consensus 70 rQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~-g~t~~v~aD~r~p~~iL~~p~~~~~lD~ 148 (267)
T PF04672_consen 70 RQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPR-GRTAYVQADLRDPEAILAHPEVRGLLDF 148 (267)
T ss_dssp -EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TT-SEEEEEE--TT-HHHHHCSHHHHCC--T
T ss_pred ceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCC-ccEEEEeCCCCCHHHHhcCHHHHhcCCC
Confidence 579999999 4557777774 4789999999999999999998765421 23789999998621 111
Q ss_pred CCeeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEec
Q 042544 167 NSFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEK 217 (305)
Q Consensus 167 ~~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~~ 217 (305)
...=.|+...++||++|.+.. ..++..++..|.||.+++++..
T Consensus 149 ~rPVavll~~vLh~v~D~~dp--------~~iv~~l~d~lapGS~L~ish~ 191 (267)
T PF04672_consen 149 DRPVAVLLVAVLHFVPDDDDP--------AGIVARLRDALAPGSYLAISHA 191 (267)
T ss_dssp TS--EEEECT-GGGS-CGCTH--------HHHHHHHHCCS-TT-EEEEEEE
T ss_pred CCCeeeeeeeeeccCCCccCH--------HHHHHHHHHhCCCCceEEEEec
Confidence 222367888899999884332 1268889999999999999764
No 226
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=98.41 E-value=3.9e-06 Score=65.83 Aligned_cols=101 Identities=29% Similarity=0.368 Sum_probs=71.1
Q ss_pred EEEEcCCCChHHHHHHhhcC--CeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCC--CCCCC-CCeeEEEecccc
Q 042544 104 VLDVGCGIGGPLREIAQFSS--TSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMK--MPFPD-NSFDAVYAIEAT 178 (305)
Q Consensus 104 vLDiGcG~G~~~~~l~~~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~--~~~~~-~~fD~v~~~~~l 178 (305)
++|+|||+|..+ .+..... ..++|+|+++.++..++..... .....+.+...|... +++.+ ..||++ +....
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~~ 128 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEG-AGLGLVDFVVADALGGVLPFEDSASFDLV-ISLLV 128 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhh-cCCCceEEEEeccccCCCCCCCCCceeEE-eeeee
Confidence 999999999977 3333222 4899999999999985554332 111116788888876 67776 489999 55544
Q ss_pred cccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEecc
Q 042544 179 CHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEKD 218 (305)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~~~ 218 (305)
.+...... .+.++.+.|+|+|.+++....
T Consensus 129 ~~~~~~~~-----------~~~~~~~~l~~~g~~~~~~~~ 157 (257)
T COG0500 129 LHLLPPAK-----------ALRELLRVLKPGGRLVLSDLL 157 (257)
T ss_pred hhcCCHHH-----------HHHHHHHhcCCCcEEEEEecc
Confidence 44333322 599999999999999887654
No 227
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=98.36 E-value=3.4e-06 Score=74.41 Aligned_cols=89 Identities=26% Similarity=0.323 Sum_probs=73.7
Q ss_pred HHHHHHHcCCCCCCeEEEEcCCCChHHHHHHhhc-C--------------------------------C-------eEEE
Q 042544 89 EHFLALQLGLKSGQKVLDVGCGIGGPLREIAQFS-S--------------------------------T-------SVTG 128 (305)
Q Consensus 89 ~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~--------------------------------~-------~v~g 128 (305)
+..|..+.+-.++..++|-=||+|.++++.|... + + .++|
T Consensus 180 AaAil~lagw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G 259 (381)
T COG0116 180 AAAILLLAGWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYG 259 (381)
T ss_pred HHHHHHHcCCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEE
Confidence 3455666777788899999999999999988431 0 1 3779
Q ss_pred EcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEEeccc
Q 042544 129 LNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIEA 177 (305)
Q Consensus 129 vD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~ 177 (305)
+|+++.+++.|+.++...|+.+.|+|.++|+..++-+-+.+|+|+|+--
T Consensus 260 ~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~NPP 308 (381)
T COG0116 260 SDIDPRHIEGAKANARAAGVGDLIEFKQADATDLKEPLEEYGVVISNPP 308 (381)
T ss_pred ecCCHHHHHHHHHHHHhcCCCceEEEEEcchhhCCCCCCcCCEEEeCCC
Confidence 9999999999999999999999999999999987654368999998753
No 228
>KOG2730 consensus Methylase [General function prediction only]
Probab=98.33 E-value=1.8e-06 Score=69.67 Aligned_cols=76 Identities=20% Similarity=0.387 Sum_probs=64.0
Q ss_pred CCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCC----CCCCCCeeEEEec
Q 042544 100 SGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKM----PFPDNSFDAVYAI 175 (305)
Q Consensus 100 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~----~~~~~~fD~v~~~ 175 (305)
....|+|.-||.|..+..++.+ +..|+++|++|.-+..|+.+++-.|++++++|+++|+.++ .+....+|+|+.+
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~-~~~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld~~~~lq~~K~~~~~vf~s 172 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQ-GPYVIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLDLASKLKADKIKYDCVFLS 172 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHh-CCeEEEEeccHHHHHHHhccceeecCCceeEEEechHHHHHHHHhhhhheeeeeecC
Confidence 4468999999999999999976 7899999999999999999999999999999999999873 3433445666654
Q ss_pred c
Q 042544 176 E 176 (305)
Q Consensus 176 ~ 176 (305)
.
T Consensus 173 p 173 (263)
T KOG2730|consen 173 P 173 (263)
T ss_pred C
Confidence 3
No 229
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=98.30 E-value=5.4e-06 Score=71.12 Aligned_cols=83 Identities=23% Similarity=0.253 Sum_probs=65.6
Q ss_pred HHHHHHHcCCCCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCC--
Q 042544 89 EHFLALQLGLKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPD-- 166 (305)
Q Consensus 89 ~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~-- 166 (305)
.+.+...+.+.++..|||||+|+|.+|..+++. +.+|+++|+++.+.+..+++.. ..++++++.+|+..+..++
T Consensus 19 ~~~Iv~~~~~~~~~~VlEiGpG~G~lT~~L~~~-~~~v~~vE~d~~~~~~L~~~~~---~~~~~~vi~~D~l~~~~~~~~ 94 (262)
T PF00398_consen 19 ADKIVDALDLSEGDTVLEIGPGPGALTRELLKR-GKRVIAVEIDPDLAKHLKERFA---SNPNVEVINGDFLKWDLYDLL 94 (262)
T ss_dssp HHHHHHHHTCGTTSEEEEESSTTSCCHHHHHHH-SSEEEEEESSHHHHHHHHHHCT---TCSSEEEEES-TTTSCGGGHC
T ss_pred HHHHHHhcCCCCCCEEEEeCCCCccchhhHhcc-cCcceeecCcHhHHHHHHHHhh---hcccceeeecchhccccHHhh
Confidence 345556677778999999999999999999987 5999999999999998888654 2468999999999877554
Q ss_pred -CCeeEEEec
Q 042544 167 -NSFDAVYAI 175 (305)
Q Consensus 167 -~~fD~v~~~ 175 (305)
+....|+++
T Consensus 95 ~~~~~~vv~N 104 (262)
T PF00398_consen 95 KNQPLLVVGN 104 (262)
T ss_dssp SSSEEEEEEE
T ss_pred cCCceEEEEE
Confidence 344566654
No 230
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=98.29 E-value=3e-06 Score=75.89 Aligned_cols=104 Identities=13% Similarity=0.097 Sum_probs=80.7
Q ss_pred CCeEEEEcCCCChHHHHHHhh--cCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCC-CCCCCeeEEEeccc
Q 042544 101 GQKVLDVGCGIGGPLREIAQF--SSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMP-FPDNSFDAVYAIEA 177 (305)
Q Consensus 101 ~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~fD~v~~~~~ 177 (305)
+.+|||+.||+|..++.++.. ...+|+++|+++..++.++++++..+.. ++++++.|+..+- .....||+|..--
T Consensus 45 ~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~-~~~v~~~Da~~~l~~~~~~fDvIdlDP- 122 (374)
T TIGR00308 45 YINIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVE-NIEVPNEDAANVLRYRNRKFHVIDIDP- 122 (374)
T ss_pred CCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEchhHHHHHHHhCCCCCEEEeCC-
Confidence 358999999999999999964 2368999999999999999999887664 6889999988642 1235799997632
Q ss_pred ccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEeccCC
Q 042544 178 TCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEKDLA 220 (305)
Q Consensus 178 l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~~~~~ 220 (305)
+ ..+. . +++.+.+.++++|.+.++..|..
T Consensus 123 f-Gs~~--~-----------fld~al~~~~~~glL~vTaTD~~ 151 (374)
T TIGR00308 123 F-GTPA--P-----------FVDSAIQASAERGLLLVTATDTS 151 (374)
T ss_pred C-CCcH--H-----------HHHHHHHhcccCCEEEEEecccH
Confidence 2 1111 1 68899999999999999865443
No 231
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=98.29 E-value=7e-07 Score=73.20 Aligned_cols=113 Identities=19% Similarity=0.221 Sum_probs=63.9
Q ss_pred HHHHcCCCCCCeEEEEcCCCChHHHHHHhhcCC-eEEEEcCCHHHHHHHHHHHH-------hcCC-CCCeEEEEcCCCCC
Q 042544 92 LALQLGLKSGQKVLDVGCGIGGPLREIAQFSST-SVTGLNNNEYQITRGKELNR-------FAGV-DKTCNFVKADFMKM 162 (305)
Q Consensus 92 l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~gvD~s~~~l~~a~~~~~-------~~~~-~~~~~~~~~d~~~~ 162 (305)
++..+++.++...+|||||.|......+...++ +.+||++.+...+.|+.... ..|. ..++++.++|+.+.
T Consensus 34 il~~~~l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl~~ 113 (205)
T PF08123_consen 34 ILDELNLTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFLDP 113 (205)
T ss_dssp HHHHTT--TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TTTH
T ss_pred HHHHhCCCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCcccc
Confidence 445677889999999999999999988844354 59999999988877765332 2332 34678889998763
Q ss_pred CCCC---CCeeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEec
Q 042544 163 PFPD---NSFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEK 217 (305)
Q Consensus 163 ~~~~---~~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~~ 217 (305)
++.. ...|+|++++... ++... ..+.+....||+|-++ |...
T Consensus 114 ~~~~~~~s~AdvVf~Nn~~F---~~~l~---------~~L~~~~~~lk~G~~I-Is~~ 158 (205)
T PF08123_consen 114 DFVKDIWSDADVVFVNNTCF---DPDLN---------LALAELLLELKPGARI-ISTK 158 (205)
T ss_dssp HHHHHHGHC-SEEEE--TTT----HHHH---------HHHHHHHTTS-TT-EE-EESS
T ss_pred HhHhhhhcCCCEEEEecccc---CHHHH---------HHHHHHHhcCCCCCEE-EECC
Confidence 3211 3368999877532 22221 1356666677776654 4443
No 232
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=98.23 E-value=6.1e-06 Score=64.96 Aligned_cols=101 Identities=16% Similarity=0.113 Sum_probs=77.6
Q ss_pred CeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEEeccccccc
Q 042544 102 QKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIEATCHA 181 (305)
Q Consensus 102 ~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~ 181 (305)
..+.|+|+|+|.++...++. ..+|++++.+|.....|.+++.-.|. .+++++.+|+.+..| +..|+|+|-..=..+
T Consensus 34 d~~~DLGaGsGiLs~~Aa~~-A~rViAiE~dPk~a~~a~eN~~v~g~-~n~evv~gDA~~y~f--e~ADvvicEmlDTaL 109 (252)
T COG4076 34 DTFADLGAGSGILSVVAAHA-AERVIAIEKDPKRARLAEENLHVPGD-VNWEVVVGDARDYDF--ENADVVICEMLDTAL 109 (252)
T ss_pred hceeeccCCcchHHHHHHhh-hceEEEEecCcHHHHHhhhcCCCCCC-cceEEEecccccccc--cccceeHHHHhhHHh
Confidence 68999999999999988876 68999999999999999998765554 489999999998877 347999875432222
Q ss_pred CChhhhhhcCCCCCcccHHHHHHHHHhCCceEEE
Q 042544 182 PDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIW 215 (305)
Q Consensus 182 ~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~ 215 (305)
-+..+ +..++.+.+.|+..+.++-.
T Consensus 110 i~E~q---------VpV~n~vleFLr~d~tiiPq 134 (252)
T COG4076 110 IEEKQ---------VPVINAVLEFLRYDPTIIPQ 134 (252)
T ss_pred hcccc---------cHHHHHHHHHhhcCCccccH
Confidence 22222 23678888888888876543
No 233
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=98.19 E-value=1.4e-05 Score=63.55 Aligned_cols=100 Identities=22% Similarity=0.260 Sum_probs=78.2
Q ss_pred CCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEEecccc
Q 042544 99 KSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIEAT 178 (305)
Q Consensus 99 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l 178 (305)
-.+++|||+|+|+|..++..+......|+..|+.|......+-+++.++. .+.+...|.-. ++..||++++..++
T Consensus 78 VrgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~angv--~i~~~~~d~~g---~~~~~Dl~LagDlf 152 (218)
T COG3897 78 VRGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAANGV--SILFTHADLIG---SPPAFDLLLAGDLF 152 (218)
T ss_pred cccceeeecccccChHHHHHHHhhhHHHHhcCCChHHHHHhhcchhhccc--eeEEeeccccC---CCcceeEEEeecee
Confidence 36899999999999999988876567999999998888887878777765 47888888765 45679999999887
Q ss_pred cccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEE
Q 042544 179 CHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIW 215 (305)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~ 215 (305)
..-+.... .+. +.+.|+..|..++.
T Consensus 153 y~~~~a~~-----------l~~-~~~~l~~~g~~vlv 177 (218)
T COG3897 153 YNHTEADR-----------LIP-WKDRLAEAGAAVLV 177 (218)
T ss_pred cCchHHHH-----------HHH-HHHHHHhCCCEEEE
Confidence 65444443 344 78888888876664
No 234
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=98.15 E-value=7.6e-06 Score=70.86 Aligned_cols=125 Identities=23% Similarity=0.281 Sum_probs=88.4
Q ss_pred HHcCCCCCCeEEEEcCCCChHHHHHHhhc--CCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCC-C-CCCCCe
Q 042544 94 LQLGLKSGQKVLDVGCGIGGPLREIAQFS--STSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKM-P-FPDNSF 169 (305)
Q Consensus 94 ~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~-~-~~~~~f 169 (305)
..+.+.++.+|||++++.|.=+..+++.. .+.|++.|+++.-+...++++.+.|.. ++.....|.... + .....|
T Consensus 79 ~~L~~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~-~v~~~~~D~~~~~~~~~~~~f 157 (283)
T PF01189_consen 79 LALDPQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVF-NVIVINADARKLDPKKPESKF 157 (283)
T ss_dssp HHHTTTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-S-SEEEEESHHHHHHHHHHTTTE
T ss_pred ccccccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCc-eEEEEeecccccccccccccc
Confidence 35678899999999999999999998542 589999999999999999999999875 677777777654 1 223469
Q ss_pred eEEEe------cccccccCChhhhhhcCCC-----CCcccHHHHHHHH----HhCCceEEEeccC
Q 042544 170 DAVYA------IEATCHAPDAAEIEIGDGL-----PDIRSTRKCLEAL----KQAGFEVIWEKDL 219 (305)
Q Consensus 170 D~v~~------~~~l~~~~~~~~~~~~~~~-----~~~~~l~~~~~~L----~~gG~~~i~~~~~ 219 (305)
|.|+. .+++..-|+.....-...+ .....++.+.+.+ +|||+++.++..+
T Consensus 158 d~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~ 222 (283)
T PF01189_consen 158 DRVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCSL 222 (283)
T ss_dssp EEEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESHH
T ss_pred chhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEeccH
Confidence 99995 2234444443111000000 0123688889999 9999999988544
No 235
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=98.13 E-value=6.3e-07 Score=72.51 Aligned_cols=105 Identities=24% Similarity=0.209 Sum_probs=60.0
Q ss_pred CCCeEEEEcCCCChHHHHHHhhc--CCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCC--------CC--CC
Q 042544 100 SGQKVLDVGCGIGGPLREIAQFS--STSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMP--------FP--DN 167 (305)
Q Consensus 100 ~~~~vLDiGcG~G~~~~~l~~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~--------~~--~~ 167 (305)
++.+|||+||++|.|+..+.+.. ..+|+|+|+.+.. . ...+.++++|+.... ++ .+
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~-----------~-~~~~~~i~~d~~~~~~~~~i~~~~~~~~~ 90 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMD-----------P-LQNVSFIQGDITNPENIKDIRKLLPESGE 90 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTG-----------S--TTEEBTTGGGEEEEHSHHGGGSHGTTTC
T ss_pred cccEEEEcCCcccceeeeeeecccccceEEEEeccccc-----------c-ccceeeeecccchhhHHHhhhhhcccccc
Confidence 45899999999999999999763 5899999998751 1 124555566654310 11 26
Q ss_pred CeeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 168 SFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 168 ~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
.+|+|+|-.+...-.+.........--.+..+.-+.+.|+|||.+++..
T Consensus 91 ~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~ 139 (181)
T PF01728_consen 91 KFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKV 139 (181)
T ss_dssp SESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEE
T ss_pred CcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEe
Confidence 8999998664332222100000000000113555567899999988865
No 236
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.13 E-value=1.7e-05 Score=64.26 Aligned_cols=99 Identities=21% Similarity=0.150 Sum_probs=68.1
Q ss_pred CCCCCeEEEEcCCCChHHHHHHhhcC--CeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCC--------CCCC
Q 042544 98 LKSGQKVLDVGCGIGGPLREIAQFSS--TSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMP--------FPDN 167 (305)
Q Consensus 98 ~~~~~~vLDiGcG~G~~~~~l~~~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~--------~~~~ 167 (305)
+.++.+|+|+||-.|.|+..+++..+ ..|+|+|+.|--. .+++.++++|+..-+ +...
T Consensus 43 ~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~------------~~~V~~iq~d~~~~~~~~~l~~~l~~~ 110 (205)
T COG0293 43 FKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKP------------IPGVIFLQGDITDEDTLEKLLEALGGA 110 (205)
T ss_pred ecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECccccc------------CCCceEEeeeccCccHHHHHHHHcCCC
Confidence 46789999999999999999996533 4599999976332 246999999998633 3345
Q ss_pred CeeEEEecccc--------cccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 168 SFDAVYAIEAT--------CHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 168 ~fD~v~~~~~l--------~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
.+|+|++-.+- .|....... ...+.-+..+|+|||.+++..
T Consensus 111 ~~DvV~sD~ap~~~g~~~~Dh~r~~~L~--------~~a~~~a~~vL~~~G~fv~K~ 159 (205)
T COG0293 111 PVDVVLSDMAPNTSGNRSVDHARSMYLC--------ELALEFALEVLKPGGSFVAKV 159 (205)
T ss_pred CcceEEecCCCCcCCCccccHHHHHHHH--------HHHHHHHHHeeCCCCeEEEEE
Confidence 57999874432 111111111 114556677999999999875
No 237
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=98.09 E-value=5.3e-05 Score=61.88 Aligned_cols=105 Identities=15% Similarity=0.178 Sum_probs=71.2
Q ss_pred HcCCCCCCeEEEEcCCCChHHHHHHhh--cCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCC----CCCCCC
Q 042544 95 QLGLKSGQKVLDVGCGIGGPLREIAQF--SSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKM----PFPDNS 168 (305)
Q Consensus 95 ~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~----~~~~~~ 168 (305)
.+++.+|.+||-+|..+|....+++.- +.+.|++|+.|+......-..++. .+|+-.+..|+... .+ -+.
T Consensus 68 ~~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~---R~NIiPIl~DAr~P~~Y~~l-v~~ 143 (229)
T PF01269_consen 68 NIPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKK---RPNIIPILEDARHPEKYRML-VEM 143 (229)
T ss_dssp --S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHH---STTEEEEES-TTSGGGGTTT-S--
T ss_pred ccCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhcc---CCceeeeeccCCChHHhhcc-ccc
Confidence 356789999999999999999999864 468999999999665444333333 35788899999852 12 247
Q ss_pred eeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 169 FDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 169 fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
+|+|++- +..+++.++ ++.++...||+||.+++..
T Consensus 144 VDvI~~D-----VaQp~Qa~I--------~~~Na~~fLk~gG~~~i~i 178 (229)
T PF01269_consen 144 VDVIFQD-----VAQPDQARI--------AALNARHFLKPGGHLIISI 178 (229)
T ss_dssp EEEEEEE------SSTTHHHH--------HHHHHHHHEEEEEEEEEEE
T ss_pred ccEEEec-----CCChHHHHH--------HHHHHHhhccCCcEEEEEE
Confidence 8999763 333444332 5788888999999998864
No 238
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=98.09 E-value=6.3e-05 Score=61.17 Aligned_cols=121 Identities=10% Similarity=0.019 Sum_probs=87.7
Q ss_pred CCCeEEEEcCCCChHHHHHHh-hcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEEeccc-
Q 042544 100 SGQKVLDVGCGIGGPLREIAQ-FSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIEA- 177 (305)
Q Consensus 100 ~~~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~- 177 (305)
.+.++.||||-.+++...+.. .+...+++.|+++..++.|.+++...++.+++++..+|....--+++.+|.|+..++
T Consensus 16 ~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l~~~d~~d~ivIAGMG 95 (226)
T COG2384 16 QGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVLELEDEIDVIVIAGMG 95 (226)
T ss_pred cCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCccccCccCCcCEEEEeCCc
Confidence 566799999999999999984 467899999999999999999999999988999999998652223447898887654
Q ss_pred ---ccccCChhhhhhc----CCCCCcccHHHHHHHHHhCCceEEEeccCC
Q 042544 178 ---TCHAPDAAEIEIG----DGLPDIRSTRKCLEALKQAGFEVIWEKDLA 220 (305)
Q Consensus 178 ---l~~~~~~~~~~~~----~~~~~~~~l~~~~~~L~~gG~~~i~~~~~~ 220 (305)
+..+-+.....+. -.+.+..-...++++|...++-+..+.-+.
T Consensus 96 G~lI~~ILee~~~~l~~~~rlILQPn~~~~~LR~~L~~~~~~I~~E~ile 145 (226)
T COG2384 96 GTLIREILEEGKEKLKGVERLILQPNIHTYELREWLSANSYEIKAETILE 145 (226)
T ss_pred HHHHHHHHHHhhhhhcCcceEEECCCCCHHHHHHHHHhCCceeeeeeeec
Confidence 1111111111111 012222346789999999999888776554
No 239
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=98.05 E-value=3.7e-06 Score=63.93 Aligned_cols=90 Identities=18% Similarity=0.211 Sum_probs=61.6
Q ss_pred eEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCC--CCCCCeeEEEecccccccCChhhhhhcCCCCCcccHHHH
Q 042544 125 SVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMP--FPDNSFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKC 202 (305)
Q Consensus 125 ~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~ 202 (305)
+|+|+||.+.+++.+++++...+..+++++++.+-+.+. .+++++|+++. .+.++|..+..-....-+.+..++.+
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~~~v~~~iF--NLGYLPggDk~i~T~~~TTl~Al~~a 78 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPEGPVDAAIF--NLGYLPGGDKSITTKPETTLKALEAA 78 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S--EEEEEE--EESB-CTS-TTSB--HHHHHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCccCCcCEEEE--ECCcCCCCCCCCCcCcHHHHHHHHHH
Confidence 689999999999999999999988888999998887754 23347898875 46777765432111111224468899
Q ss_pred HHHHHhCCceEEEe
Q 042544 203 LEALKQAGFEVIWE 216 (305)
Q Consensus 203 ~~~L~~gG~~~i~~ 216 (305)
.++|+|||.+.+..
T Consensus 79 l~lL~~gG~i~iv~ 92 (140)
T PF06962_consen 79 LELLKPGGIITIVV 92 (140)
T ss_dssp HHHEEEEEEEEEEE
T ss_pred HHhhccCCEEEEEE
Confidence 99999999998865
No 240
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=98.02 E-value=1.6e-05 Score=69.17 Aligned_cols=88 Identities=18% Similarity=0.194 Sum_probs=63.3
Q ss_pred CCCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEEeccc
Q 042544 98 LKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIEA 177 (305)
Q Consensus 98 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~ 177 (305)
+.++.++|||||++|.|+..+.+. +.+|++||.++-. .. +. ..++|.....|...+..+.+.+|.++|-.+
T Consensus 209 ~~~g~~vlDLGAsPGGWT~~L~~r-G~~V~AVD~g~l~-~~----L~---~~~~V~h~~~d~fr~~p~~~~vDwvVcDmv 279 (357)
T PRK11760 209 LAPGMRAVDLGAAPGGWTYQLVRR-GMFVTAVDNGPMA-QS----LM---DTGQVEHLRADGFKFRPPRKNVDWLVCDMV 279 (357)
T ss_pred cCCCCEEEEeCCCCcHHHHHHHHc-CCEEEEEechhcC-Hh----hh---CCCCEEEEeccCcccCCCCCCCCEEEEecc
Confidence 468999999999999999999987 7899999965422 11 11 145788888888765333577999988544
Q ss_pred ccccCChhhhhhcCCCCCcccHHHHHHHHHhC
Q 042544 178 TCHAPDAAEIEIGDGLPDIRSTRKCLEALKQA 209 (305)
Q Consensus 178 l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~g 209 (305)
..|.. +.+-+.++|..|
T Consensus 280 ----e~P~r-----------va~lm~~Wl~~g 296 (357)
T PRK11760 280 ----EKPAR-----------VAELMAQWLVNG 296 (357)
T ss_pred ----cCHHH-----------HHHHHHHHHhcC
Confidence 22333 467777888765
No 241
>PRK10742 putative methyltransferase; Provisional
Probab=98.01 E-value=3.6e-05 Score=64.30 Aligned_cols=90 Identities=18% Similarity=0.150 Sum_probs=71.3
Q ss_pred HHHHHHcCCCCCC--eEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhc------C--CCCCeEEEEcCC
Q 042544 90 HFLALQLGLKSGQ--KVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFA------G--VDKTCNFVKADF 159 (305)
Q Consensus 90 ~~l~~~~~~~~~~--~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~------~--~~~~~~~~~~d~ 159 (305)
+.+....+++++. +|||+-+|+|..+..++.. +++|+++|-++......+..+... + +..+++++++|.
T Consensus 76 ~~l~kAvglk~g~~p~VLD~TAGlG~Da~~las~-G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da 154 (250)
T PRK10742 76 EAVAKAVGIKGDYLPDVVDATAGLGRDAFVLASV-GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASS 154 (250)
T ss_pred cHHHHHhCCCCCCCCEEEECCCCccHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcH
Confidence 5666777888887 9999999999999999986 888999999999999888887764 2 224688999998
Q ss_pred CCC-CCCCCCeeEEEecccccc
Q 042544 160 MKM-PFPDNSFDAVYAIEATCH 180 (305)
Q Consensus 160 ~~~-~~~~~~fD~v~~~~~l~~ 180 (305)
..+ .-...+||+|+.--.+.|
T Consensus 155 ~~~L~~~~~~fDVVYlDPMfp~ 176 (250)
T PRK10742 155 LTALTDITPRPQVVYLDPMFPH 176 (250)
T ss_pred HHHHhhCCCCCcEEEECCCCCC
Confidence 763 222347999998655555
No 242
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=98.00 E-value=5.7e-05 Score=68.35 Aligned_cols=113 Identities=15% Similarity=0.154 Sum_probs=85.9
Q ss_pred CeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEEeccccccc
Q 042544 102 QKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIEATCHA 181 (305)
Q Consensus 102 ~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~ 181 (305)
.++|-+|||.-.++..+-+.....|+-+|+|+..++....+... ...-..+...|+..+.|++++||+|+..+.+.++
T Consensus 50 ~~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~~~--~~~~~~~~~~d~~~l~fedESFdiVIdkGtlDal 127 (482)
T KOG2352|consen 50 FKILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQVRNAK--ERPEMQMVEMDMDQLVFEDESFDIVIDKGTLDAL 127 (482)
T ss_pred ceeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHHhcccc--CCcceEEEEecchhccCCCcceeEEEecCccccc
Confidence 39999999999888888766567999999999999887765432 1345789999999999999999999999988887
Q ss_pred CChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEec
Q 042544 182 PDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEK 217 (305)
Q Consensus 182 ~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~~ 217 (305)
-......... ......+.++.++|++||..+....
T Consensus 128 ~~de~a~~~~-~~v~~~~~eVsrvl~~~gk~~svtl 162 (482)
T KOG2352|consen 128 FEDEDALLNT-AHVSNMLDEVSRVLAPGGKYISVTL 162 (482)
T ss_pred cCCchhhhhh-HHhhHHHhhHHHHhccCCEEEEEEe
Confidence 5443221100 1112358899999999998776553
No 243
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=97.99 E-value=2.6e-05 Score=60.35 Aligned_cols=58 Identities=17% Similarity=0.142 Sum_probs=48.7
Q ss_pred eEEEEcCCCChHHHHHHhh-cCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCC
Q 042544 103 KVLDVGCGIGGPLREIAQF-SSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMK 161 (305)
Q Consensus 103 ~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~ 161 (305)
++||+|||.|.++..++.. +..+|+++|+++.+.+.++++++..+.. ++.++...+.+
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~~-~v~~~~~al~~ 59 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNLP-NVVLLNAAVGD 59 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCCC-cEEEEEeeeeC
Confidence 4899999999999999854 4568999999999999999998877664 58888777654
No 244
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=97.99 E-value=4.8e-05 Score=66.09 Aligned_cols=112 Identities=23% Similarity=0.307 Sum_probs=81.7
Q ss_pred CCCCeEEEEcCCCChHHHHHHhhc-CCeEEEEcCCHHHHHHHHHH--HHhcC----CCCCeEEEEcCCCCC-CCCCCCee
Q 042544 99 KSGQKVLDVGCGIGGPLREIAQFS-STSVTGLNNNEYQITRGKEL--NRFAG----VDKTCNFVKADFMKM-PFPDNSFD 170 (305)
Q Consensus 99 ~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~l~~a~~~--~~~~~----~~~~~~~~~~d~~~~-~~~~~~fD 170 (305)
+...+||-+|.|.|.-++++.++| -.+++-+|++|.|++.++.+ .+..+ .+++++++..|+..+ .-..+.||
T Consensus 288 ~~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~fD 367 (508)
T COG4262 288 RGARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMFD 367 (508)
T ss_pred cccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhccccc
Confidence 455789999999999999999988 47999999999999999843 22222 146899999998874 22345899
Q ss_pred EEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 171 AVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 171 ~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
.|+. .++||....++. +-+..+..-+.+.|+++|.+++..
T Consensus 368 ~vIV-----Dl~DP~tps~~r-lYS~eFY~ll~~~l~e~Gl~VvQa 407 (508)
T COG4262 368 VVIV-----DLPDPSTPSIGR-LYSVEFYRLLSRHLAETGLMVVQA 407 (508)
T ss_pred EEEE-----eCCCCCCcchhh-hhhHHHHHHHHHhcCcCceEEEec
Confidence 9875 456653321111 222346788889999999999864
No 245
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=97.99 E-value=7.2e-05 Score=63.83 Aligned_cols=105 Identities=14% Similarity=0.170 Sum_probs=62.9
Q ss_pred CCeEEEEcCCCChHHHH-HHhh--cCCeEEEEcCCHHHHHHHHHHHH-hcCCCCCeEEEEcCCCCCCCCCCCeeEEEecc
Q 042544 101 GQKVLDVGCGIGGPLRE-IAQF--SSTSVTGLNNNEYQITRGKELNR-FAGVDKTCNFVKADFMKMPFPDNSFDAVYAIE 176 (305)
Q Consensus 101 ~~~vLDiGcG~G~~~~~-l~~~--~~~~v~gvD~s~~~l~~a~~~~~-~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~ 176 (305)
..+|+=||||.==++.. +++. .+..|+++|+++..++.+++.+. ..++..++.|+.+|....+..-..||+|+...
T Consensus 121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~lAa 200 (276)
T PF03059_consen 121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFLAA 200 (276)
T ss_dssp --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE-T
T ss_pred cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEEhh
Confidence 35999999997655544 4433 36789999999999999999887 55667789999999987654446799998765
Q ss_pred cccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEE
Q 042544 177 ATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIW 215 (305)
Q Consensus 177 ~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~ 215 (305)
....-..+... .+.++.+.++||..+++-
T Consensus 201 lVg~~~e~K~~----------Il~~l~~~m~~ga~l~~R 229 (276)
T PF03059_consen 201 LVGMDAEPKEE----------ILEHLAKHMAPGARLVVR 229 (276)
T ss_dssp T-S----SHHH----------HHHHHHHHS-TTSEEEEE
T ss_pred hcccccchHHH----------HHHHHHhhCCCCcEEEEe
Confidence 44432222221 699999999999977773
No 246
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=97.95 E-value=5.8e-05 Score=65.42 Aligned_cols=83 Identities=16% Similarity=0.218 Sum_probs=67.1
Q ss_pred HHHHcCCCCCCeEEEEcCCCChHHHHHHhh-cCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCC-----CC
Q 042544 92 LALQLGLKSGQKVLDVGCGIGGPLREIAQF-SSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMP-----FP 165 (305)
Q Consensus 92 l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~-----~~ 165 (305)
++..+.+.++..++|.-||.|..+..+++. +.++|+|+|.++.+++.+++++... ..++.++++++.++. ..
T Consensus 12 vl~~L~~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~--~~R~~~i~~nF~~l~~~l~~~~ 89 (305)
T TIGR00006 12 VVEGLNIKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDF--EGRVVLIHDNFANFFEHLDELL 89 (305)
T ss_pred HHHhcCcCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhc--CCcEEEEeCCHHHHHHHHHhcC
Confidence 444667778889999999999999999964 4589999999999999999987654 357999999998743 23
Q ss_pred CCCeeEEEecc
Q 042544 166 DNSFDAVYAIE 176 (305)
Q Consensus 166 ~~~fD~v~~~~ 176 (305)
.+++|.|+.-.
T Consensus 90 ~~~vDgIl~DL 100 (305)
T TIGR00006 90 VTKIDGILVDL 100 (305)
T ss_pred CCcccEEEEec
Confidence 45799998743
No 247
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=97.94 E-value=9.9e-05 Score=69.81 Aligned_cols=78 Identities=15% Similarity=0.153 Sum_probs=55.7
Q ss_pred CCCeEEEEcCCCChHHHHHHhhc---------CCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCC-----CC
Q 042544 100 SGQKVLDVGCGIGGPLREIAQFS---------STSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMP-----FP 165 (305)
Q Consensus 100 ~~~~vLDiGcG~G~~~~~l~~~~---------~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~-----~~ 165 (305)
...+|||.|||+|.++..++... ...++|+|+++..+..++.++...+. ..+.+.+.|..... -.
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~-~~~~i~~~d~l~~~~~~~~~~ 109 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFAL-LEINVINFNSLSYVLLNIESY 109 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCC-CCceeeecccccccccccccc
Confidence 45699999999999999887431 25789999999999999988776541 23455655543211 11
Q ss_pred CCCeeEEEecccc
Q 042544 166 DNSFDAVYAIEAT 178 (305)
Q Consensus 166 ~~~fD~v~~~~~l 178 (305)
.+.||+|+++--.
T Consensus 110 ~~~fD~IIgNPPy 122 (524)
T TIGR02987 110 LDLFDIVITNPPY 122 (524)
T ss_pred cCcccEEEeCCCc
Confidence 2579999997543
No 248
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=97.93 E-value=0.00014 Score=62.69 Aligned_cols=82 Identities=13% Similarity=0.139 Sum_probs=49.4
Q ss_pred CCeEEEEcCCCChHHHHH-HhhcCCeEEEEcCCHHHHHHHHHHHHhc-CCCCCeEEEEcCCCC-----CCCCCCCeeEEE
Q 042544 101 GQKVLDVGCGIGGPLREI-AQFSSTSVTGLNNNEYQITRGKELNRFA-GVDKTCNFVKADFMK-----MPFPDNSFDAVY 173 (305)
Q Consensus 101 ~~~vLDiGcG~G~~~~~l-~~~~~~~v~gvD~s~~~l~~a~~~~~~~-~~~~~~~~~~~d~~~-----~~~~~~~fD~v~ 173 (305)
.-++||||||....--.| ++..+.+++|.|+++..++.|++++... ++..+|+++...-.. +..+++.||+.+
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i~~~~e~~dftm 182 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNIFDGIIQPNERFDFTM 182 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTTSTT--S-EEEEE
T ss_pred ceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccccchhhhcccceeeEEe
Confidence 458999999977543333 3445899999999999999999999999 888899987664322 112346899999
Q ss_pred ecccccccC
Q 042544 174 AIEATCHAP 182 (305)
Q Consensus 174 ~~~~l~~~~ 182 (305)
|+--++.-.
T Consensus 183 CNPPFy~s~ 191 (299)
T PF05971_consen 183 CNPPFYSSQ 191 (299)
T ss_dssp E-----SS-
T ss_pred cCCccccCh
Confidence 976665443
No 249
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=97.83 E-value=0.0001 Score=59.46 Aligned_cols=104 Identities=17% Similarity=0.238 Sum_probs=77.4
Q ss_pred CCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCC-C-CCCCCCeeEEEecc
Q 042544 99 KSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMK-M-PFPDNSFDAVYAIE 176 (305)
Q Consensus 99 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~-~-~~~~~~fD~v~~~~ 176 (305)
.+|.+||.||-|-|.....+.+.+..+=+.++..|..++..+.... ...+++....+-.++ + .++|+.||-|+---
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw--~ek~nViil~g~WeDvl~~L~d~~FDGI~yDT 177 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGW--REKENVIILEGRWEDVLNTLPDKHFDGIYYDT 177 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhccc--ccccceEEEecchHhhhccccccCcceeEeec
Confidence 5788999999999999999987766777889999999887766432 224577777777665 2 36789999998643
Q ss_pred cccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEE
Q 042544 177 ATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIW 215 (305)
Q Consensus 177 ~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~ 215 (305)
.-.+..+... +.+.+.++|||+|.+-..
T Consensus 178 y~e~yEdl~~-----------~hqh~~rLLkP~gv~Syf 205 (271)
T KOG1709|consen 178 YSELYEDLRH-----------FHQHVVRLLKPEGVFSYF 205 (271)
T ss_pred hhhHHHHHHH-----------HHHHHhhhcCCCceEEEe
Confidence 3333333322 577899999999987664
No 250
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=97.82 E-value=8.2e-05 Score=65.91 Aligned_cols=124 Identities=19% Similarity=0.228 Sum_probs=85.3
Q ss_pred HcCCCCCCeEEEEcCCCChHHHHHHhh--cCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCC---CCCCCe
Q 042544 95 QLGLKSGQKVLDVGCGIGGPLREIAQF--SSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMP---FPDNSF 169 (305)
Q Consensus 95 ~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~---~~~~~f 169 (305)
.+.+.+|.||||+++-.|.=+.++|.. -.+.|++.|.+..-+...+.++.+.|.. +..+...|...+| ++. +|
T Consensus 236 aL~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~-ntiv~n~D~~ef~~~~~~~-~f 313 (460)
T KOG1122|consen 236 ALDPQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVT-NTIVSNYDGREFPEKEFPG-SF 313 (460)
T ss_pred ecCCCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCC-ceEEEccCcccccccccCc-cc
Confidence 356788999999999999988888843 3579999999999999999999999975 5667777776665 444 89
Q ss_pred eEEEe----cc--cccccCCh---hhhhhcCCCCC--cccHHHHHHHHHhCCceEEEeccCC
Q 042544 170 DAVYA----IE--ATCHAPDA---AEIEIGDGLPD--IRSTRKCLEALKQAGFEVIWEKDLA 220 (305)
Q Consensus 170 D~v~~----~~--~l~~~~~~---~~~~~~~~~~~--~~~l~~~~~~L~~gG~~~i~~~~~~ 220 (305)
|-|+. ++ ++.--+.. ....-...+.. -+.+..+..++++||+++.++..+.
T Consensus 314 DRVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCSI~ 375 (460)
T KOG1122|consen 314 DRVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCSIT 375 (460)
T ss_pred ceeeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeeecc
Confidence 99984 22 21111100 00000000000 1257777889999999999886554
No 251
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=97.81 E-value=5e-06 Score=66.46 Aligned_cols=93 Identities=16% Similarity=0.078 Sum_probs=68.4
Q ss_pred CCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEEecccccc
Q 042544 101 GQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIEATCH 180 (305)
Q Consensus 101 ~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~ 180 (305)
+.++||+|+|.|..+..++.. -.+|++.+.|..|..+.+++ +..++ ...++.-.+-+||+|.|.+.+.-
T Consensus 113 ~~~lLDlGAGdGeit~~m~p~-feevyATElS~tMr~rL~kk--------~ynVl--~~~ew~~t~~k~dli~clNlLDR 181 (288)
T KOG3987|consen 113 PVTLLDLGAGDGEITLRMAPT-FEEVYATELSWTMRDRLKKK--------NYNVL--TEIEWLQTDVKLDLILCLNLLDR 181 (288)
T ss_pred CeeEEeccCCCcchhhhhcch-HHHHHHHHhhHHHHHHHhhc--------CCcee--eehhhhhcCceeehHHHHHHHHh
Confidence 469999999999999999854 35799999999999877653 12222 12222222456999999988865
Q ss_pred cCChhhhhhcCCCCCcccHHHHHHHHHh-CCceEEE
Q 042544 181 APDAAEIEIGDGLPDIRSTRKCLEALKQ-AGFEVIW 215 (305)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~l~~~~~~L~~-gG~~~i~ 215 (305)
--++-. .++.++.+|+| +|.+++.
T Consensus 182 c~~p~k-----------LL~Di~~vl~psngrviva 206 (288)
T KOG3987|consen 182 CFDPFK-----------LLEDIHLVLAPSNGRVIVA 206 (288)
T ss_pred hcChHH-----------HHHHHHHHhccCCCcEEEE
Confidence 555544 69999999999 8887775
No 252
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=97.74 E-value=0.00012 Score=58.48 Aligned_cols=115 Identities=18% Similarity=0.172 Sum_probs=76.0
Q ss_pred CCCeEEEEcCCCChHHHHHH-hhcCCeEEEEcCCHHHHHHHHHHHHhcCC------CCCeEEEEcCCCCCCCCCCCeeEE
Q 042544 100 SGQKVLDVGCGIGGPLREIA-QFSSTSVTGLNNNEYQITRGKELNRFAGV------DKTCNFVKADFMKMPFPDNSFDAV 172 (305)
Q Consensus 100 ~~~~vLDiGcG~G~~~~~l~-~~~~~~v~gvD~s~~~l~~a~~~~~~~~~------~~~~~~~~~d~~~~~~~~~~fD~v 172 (305)
..-.+.|||||-|.++..++ .+|..-+.|++|-...-+..++++.+... -.++.+...+.... -.+-|..-
T Consensus 60 ~kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~--lpn~f~kg 137 (249)
T KOG3115|consen 60 KKVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKF--LPNFFEKG 137 (249)
T ss_pred ccceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhh--ccchhhhc
Confidence 34579999999999999999 67889999999999999999888876642 13455665555442 12223332
Q ss_pred EecccccccCChhhhhhc--CCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 173 YAIEATCHAPDAAEIEIG--DGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 173 ~~~~~l~~~~~~~~~~~~--~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
..+-.+..+|++...+.. ..+..-..+.+..-+|++||.++..+
T Consensus 138 qLskmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~ytit 183 (249)
T KOG3115|consen 138 QLSKMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYTIT 183 (249)
T ss_pred ccccceeecCChhHhhhhccceeechhHHHHHHhhhhcCceEEEEe
Confidence 233334456666432211 11112235888889999999888765
No 253
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=97.68 E-value=8.8e-05 Score=58.92 Aligned_cols=120 Identities=15% Similarity=0.106 Sum_probs=71.2
Q ss_pred HcCCCCCCeEEEEcCCCChHHHHHHhh--cCCeEEEEcCCHHHH----HHHHHH-HHhcCCCCCeEEEEcCCCCCCCCCC
Q 042544 95 QLGLKSGQKVLDVGCGIGGPLREIAQF--SSTSVTGLNNNEYQI----TRGKEL-NRFAGVDKTCNFVKADFMKMPFPDN 167 (305)
Q Consensus 95 ~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l----~~a~~~-~~~~~~~~~~~~~~~d~~~~~~~~~ 167 (305)
..+++++++|+|+=.|.|.|+..++.. +.+.|+++-..+... +..+.+ +.+.....+++.+-.+...++ +.+
T Consensus 43 FaGlkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~~A~~-~pq 121 (238)
T COG4798 43 FAGLKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGKPLVALG-APQ 121 (238)
T ss_pred EeccCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhhhhhhhhCCcccccC-CCC
Confidence 457899999999999999999999965 345777765543311 101111 111111235566666666655 456
Q ss_pred CeeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEeccC
Q 042544 168 SFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEKDL 219 (305)
Q Consensus 168 ~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~~~~ 219 (305)
..|+++....-|.+..... .+-..-.+...+.+.|||||.+++.++..
T Consensus 122 ~~d~~~~~~~yhdmh~k~i----~~~~A~~vna~vf~~LKPGGv~~V~dH~a 169 (238)
T COG4798 122 KLDLVPTAQNYHDMHNKNI----HPATAAKVNAAVFKALKPGGVYLVEDHRA 169 (238)
T ss_pred cccccccchhhhhhhcccc----CcchHHHHHHHHHHhcCCCcEEEEEeccc
Confidence 6788876443332221100 00000115788999999999999988644
No 254
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.65 E-value=0.00054 Score=54.95 Aligned_cols=105 Identities=17% Similarity=0.208 Sum_probs=77.3
Q ss_pred cCCCCCCeEEEEcCCCChHHHHHHhh-cCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCC---CCCCCeeE
Q 042544 96 LGLKSGQKVLDVGCGIGGPLREIAQF-SSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMP---FPDNSFDA 171 (305)
Q Consensus 96 ~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~---~~~~~fD~ 171 (305)
+++.++.+||=+|+.+|....+++.- ..+.+++|+.|+.+....-..+.. .+|+--+..|+.... .-=+..|+
T Consensus 72 ~pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~---R~Ni~PIL~DA~~P~~Y~~~Ve~VDv 148 (231)
T COG1889 72 FPIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEK---RPNIIPILEDARKPEKYRHLVEKVDV 148 (231)
T ss_pred CCcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHh---CCCceeeecccCCcHHhhhhcccccE
Confidence 57889999999999999999999964 358899999999887655554443 357888999997521 11245788
Q ss_pred EEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 172 VYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 172 v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
|+. .+..+.+.++ +..++...|++||.+++..
T Consensus 149 iy~-----DVAQp~Qa~I--------~~~Na~~FLk~~G~~~i~i 180 (231)
T COG1889 149 IYQ-----DVAQPNQAEI--------LADNAEFFLKKGGYVVIAI 180 (231)
T ss_pred EEE-----ecCCchHHHH--------HHHHHHHhcccCCeEEEEE
Confidence 864 4545544433 6788899999999777654
No 255
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=97.60 E-value=0.00033 Score=58.21 Aligned_cols=90 Identities=30% Similarity=0.380 Sum_probs=55.3
Q ss_pred HHHHHHcCCCCCC--eEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhc--CCC------CCeEEEEcCC
Q 042544 90 HFLALQLGLKSGQ--KVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFA--GVD------KTCNFVKADF 159 (305)
Q Consensus 90 ~~l~~~~~~~~~~--~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~--~~~------~~~~~~~~d~ 159 (305)
+.+....+++++. +|||+-+|-|.-+..++.. |++|++++-||.+....+.-+... +.. .+++++++|.
T Consensus 63 ~~l~kA~Glk~~~~~~VLDaTaGLG~Da~vlA~~-G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~ 141 (234)
T PF04445_consen 63 DPLAKAVGLKPGMRPSVLDATAGLGRDAFVLASL-GCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDA 141 (234)
T ss_dssp SHHHHHTT-BTTB---EEETT-TTSHHHHHHHHH-T--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-C
T ss_pred cHHHHHhCCCCCCCCEEEECCCcchHHHHHHHcc-CCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCH
Confidence 3455566777764 8999999999999999865 899999999998776655433221 111 3789999999
Q ss_pred CC-CCCCCCCeeEEEecccccc
Q 042544 160 MK-MPFPDNSFDAVYAIEATCH 180 (305)
Q Consensus 160 ~~-~~~~~~~fD~v~~~~~l~~ 180 (305)
.+ ++.++++||+|+.--++.+
T Consensus 142 ~~~L~~~~~s~DVVY~DPMFp~ 163 (234)
T PF04445_consen 142 LEYLRQPDNSFDVVYFDPMFPE 163 (234)
T ss_dssp CCHCCCHSS--SEEEE--S---
T ss_pred HHHHhhcCCCCCEEEECCCCCC
Confidence 87 5666789999998766655
No 256
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=97.54 E-value=5.3e-06 Score=60.79 Aligned_cols=99 Identities=19% Similarity=0.292 Sum_probs=40.5
Q ss_pred EEEcCCCChHHHHHHhh--cC--CeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCC--CCCCCCeeEEEecccc
Q 042544 105 LDVGCGIGGPLREIAQF--SS--TSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKM--PFPDNSFDAVYAIEAT 178 (305)
Q Consensus 105 LDiGcG~G~~~~~l~~~--~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~fD~v~~~~~l 178 (305)
||||+..|..+..+++. .. .+++++|..+. .+.+++.++..+...+++++.++..+. .++.+++|+++.-..
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg~- 78 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDGD- 78 (106)
T ss_dssp --------------------------EEEESS-------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES--
T ss_pred CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECCC-
Confidence 68999999999888742 22 37999999985 333444444455566899999998752 133578999986432
Q ss_pred cccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 179 CHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
|-.... ...+..+...|+|||++++.+
T Consensus 79 -H~~~~~----------~~dl~~~~~~l~~ggviv~dD 105 (106)
T PF13578_consen 79 -HSYEAV----------LRDLENALPRLAPGGVIVFDD 105 (106)
T ss_dssp ---HHHH----------HHHHHHHGGGEEEEEEEEEE-
T ss_pred -CCHHHH----------HHHHHHHHHHcCCCeEEEEeC
Confidence 111111 114777888899999888754
No 257
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.52 E-value=0.00055 Score=51.93 Aligned_cols=84 Identities=21% Similarity=0.291 Sum_probs=66.1
Q ss_pred HHHHcCCCCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeE
Q 042544 92 LALQLGLKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDA 171 (305)
Q Consensus 92 l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~ 171 (305)
++.++.-.+..+.+|+|+|.|......++..-...+|++++|-.+..++-..-+.++.....|..-|+...++.| |..
T Consensus 64 VLSll~~n~~GklvDlGSGDGRiVlaaar~g~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK~dl~d--y~~ 141 (199)
T KOG4058|consen 64 VLSLLRGNPKGKLVDLGSGDGRIVLAAARCGLRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWKVDLRD--YRN 141 (199)
T ss_pred HHHHccCCCCCcEEeccCCCceeehhhhhhCCCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhhccccc--cce
Confidence 344566567679999999999999888875336789999999999999988888888888999999998877655 444
Q ss_pred EEeccc
Q 042544 172 VYAIEA 177 (305)
Q Consensus 172 v~~~~~ 177 (305)
|+...+
T Consensus 142 vviFga 147 (199)
T KOG4058|consen 142 VVIFGA 147 (199)
T ss_pred EEEeeh
Confidence 444333
No 258
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=97.44 E-value=0.00044 Score=57.68 Aligned_cols=82 Identities=15% Similarity=0.210 Sum_probs=58.1
Q ss_pred CCCCCeEEEEcCCCChHHHHHHh-hcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEEecc
Q 042544 98 LKSGQKVLDVGCGIGGPLREIAQ-FSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIE 176 (305)
Q Consensus 98 ~~~~~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~ 176 (305)
+++..+|+|||||.==++..+.. .++..++|+||+..+++.....+...+. ..++.+.|+..-+ +....|+.+..=
T Consensus 103 ~~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~--~~~~~v~Dl~~~~-~~~~~DlaLllK 179 (251)
T PF07091_consen 103 IPPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGV--PHDARVRDLLSDP-PKEPADLALLLK 179 (251)
T ss_dssp S---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT---CEEEEEE-TTTSH-TTSEESEEEEET
T ss_pred CCCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCC--CcceeEeeeeccC-CCCCcchhhHHH
Confidence 34568999999999888887763 3568999999999999999998888765 4677778887643 346789998766
Q ss_pred cccccC
Q 042544 177 ATCHAP 182 (305)
Q Consensus 177 ~l~~~~ 182 (305)
+++.+.
T Consensus 180 ~lp~le 185 (251)
T PF07091_consen 180 TLPCLE 185 (251)
T ss_dssp -HHHHH
T ss_pred HHHHHH
Confidence 655443
No 259
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=97.35 E-value=0.00047 Score=54.55 Aligned_cols=67 Identities=19% Similarity=0.265 Sum_probs=48.0
Q ss_pred CCCCCeEEEEcCCCChHHHHHHhh--cCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEc-CCCCC--------CCCC
Q 042544 98 LKSGQKVLDVGCGIGGPLREIAQF--SSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKA-DFMKM--------PFPD 166 (305)
Q Consensus 98 ~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~-d~~~~--------~~~~ 166 (305)
+.|+.+|||+||..|.|+.-..+. |.+.|.|||+-.-. ..+.+.++++ |+.+. ..|+
T Consensus 67 l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~~------------p~~Ga~~i~~~dvtdp~~~~ki~e~lp~ 134 (232)
T KOG4589|consen 67 LRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHIE------------PPEGATIIQGNDVTDPETYRKIFEALPN 134 (232)
T ss_pred cCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeecc------------CCCCcccccccccCCHHHHHHHHHhCCC
Confidence 467899999999999999887743 77899999984321 1234556665 66651 1466
Q ss_pred CCeeEEEecc
Q 042544 167 NSFDAVYAIE 176 (305)
Q Consensus 167 ~~fD~v~~~~ 176 (305)
...|+|++-.
T Consensus 135 r~VdvVlSDM 144 (232)
T KOG4589|consen 135 RPVDVVLSDM 144 (232)
T ss_pred CcccEEEecc
Confidence 7789998743
No 260
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.28 E-value=0.00014 Score=56.03 Aligned_cols=106 Identities=16% Similarity=0.217 Sum_probs=69.6
Q ss_pred CCCeEEEEcCC-CChHHHHHH-hhcCCeEEEEcCCHHHHHHHHHHHHhcCC--CCCeEEEEcCCCC--CCCCCCCeeEEE
Q 042544 100 SGQKVLDVGCG-IGGPLREIA-QFSSTSVTGLNNNEYQITRGKELNRFAGV--DKTCNFVKADFMK--MPFPDNSFDAVY 173 (305)
Q Consensus 100 ~~~~vLDiGcG-~G~~~~~l~-~~~~~~v~gvD~s~~~l~~a~~~~~~~~~--~~~~~~~~~d~~~--~~~~~~~fD~v~ 173 (305)
.|.+||++|.| ||..++.+| ..+...|...|-++..++..++.....-. -.++....-+... .......||.|+
T Consensus 29 rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq~eq~tFDiIl 108 (201)
T KOG3201|consen 29 RGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQSQQEQHTFDIIL 108 (201)
T ss_pred hHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhhHHHHhhCcccEEE
Confidence 46799999999 666666666 44678999999999999887775443311 1123222222221 112345899999
Q ss_pred ecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 174 AIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 174 ~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
|...+..-..... .++.++..|+|.|..++..
T Consensus 109 aADClFfdE~h~s-----------LvdtIk~lL~p~g~Al~fs 140 (201)
T KOG3201|consen 109 AADCLFFDEHHES-----------LVDTIKSLLRPSGRALLFS 140 (201)
T ss_pred eccchhHHHHHHH-----------HHHHHHHHhCcccceeEec
Confidence 9886544332222 5888999999999977754
No 261
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=97.24 E-value=0.00081 Score=59.97 Aligned_cols=104 Identities=16% Similarity=0.190 Sum_probs=70.3
Q ss_pred CeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCC-CCCeeEEEecccccc
Q 042544 102 QKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFP-DNSFDAVYAIEATCH 180 (305)
Q Consensus 102 ~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~fD~v~~~~~l~~ 180 (305)
..|||||+|||.++...++..+-.|++++.-..|.+.|++.....|..+++.++.-.-.+.... ....|+++.-.....
T Consensus 68 v~vLdigtGTGLLSmMAvragaD~vtA~EvfkPM~d~arkI~~kng~SdkI~vInkrStev~vg~~~RadI~v~e~fdtE 147 (636)
T KOG1501|consen 68 VFVLDIGTGTGLLSMMAVRAGADSVTACEVFKPMVDLARKIMHKNGMSDKINVINKRSTEVKVGGSSRADIAVREDFDTE 147 (636)
T ss_pred EEEEEccCCccHHHHHHHHhcCCeEEeehhhchHHHHHHHHHhcCCCccceeeeccccceeeecCcchhhhhhHhhhhhh
Confidence 4699999999999888776656789999999999999999999999988998887665553321 223455543222111
Q ss_pred cCChhhhhhcCCCCCcccHHHHHHHHHhCCceEE
Q 042544 181 APDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVI 214 (305)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i 214 (305)
+ ++.| .++.++++.+.|-..|.-.+
T Consensus 148 l-------igeG--alps~qhAh~~L~~~nc~~V 172 (636)
T KOG1501|consen 148 L-------IGEG--ALPSLQHAHDMLLVDNCKTV 172 (636)
T ss_pred h-------hccc--cchhHHHHHHHhcccCCeec
Confidence 1 1111 12357788777765554433
No 262
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.24 E-value=0.0021 Score=53.10 Aligned_cols=97 Identities=19% Similarity=0.131 Sum_probs=67.3
Q ss_pred CCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeE-EEEcCCCCCC---CCCCCeeEEEe
Q 042544 99 KSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCN-FVKADFMKMP---FPDNSFDAVYA 174 (305)
Q Consensus 99 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~-~~~~d~~~~~---~~~~~fD~v~~ 174 (305)
.++..+||||+.||.++..+.+....+|+|+|....++.---+ ..+++. +...|+..+. +. +..|++++
T Consensus 78 ~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~kLR------~d~rV~~~E~tN~r~l~~~~~~-~~~d~~v~ 150 (245)
T COG1189 78 VKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHWKLR------NDPRVIVLERTNVRYLTPEDFT-EKPDLIVI 150 (245)
T ss_pred CCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCHhHh------cCCcEEEEecCChhhCCHHHcc-cCCCeEEE
Confidence 3678999999999999999998766899999999877753222 133443 3444555432 22 35788887
Q ss_pred cccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 175 IEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 175 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
--++-.+.. .+..+..+++++|.++...
T Consensus 151 DvSFISL~~--------------iLp~l~~l~~~~~~~v~Lv 178 (245)
T COG1189 151 DVSFISLKL--------------ILPALLLLLKDGGDLVLLV 178 (245)
T ss_pred EeehhhHHH--------------HHHHHHHhcCCCceEEEEe
Confidence 554443222 4888899999999877743
No 263
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=97.20 E-value=0.0034 Score=55.24 Aligned_cols=96 Identities=21% Similarity=0.258 Sum_probs=68.3
Q ss_pred cCCCCCCeEEEEcCC-CChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcC-CCCCCCCCCCeeEEE
Q 042544 96 LGLKSGQKVLDVGCG-IGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKAD-FMKMPFPDNSFDAVY 173 (305)
Q Consensus 96 ~~~~~~~~vLDiGcG-~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d-~~~~~~~~~~fD~v~ 173 (305)
..+.|+.+|+=+|+| .|..+..+++..+++|+++|.|+.-++.|++. |. -.++... .....--.+.||+|+
T Consensus 162 ~~~~pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~l----GA---d~~i~~~~~~~~~~~~~~~d~ii 234 (339)
T COG1064 162 ANVKPGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKKL----GA---DHVINSSDSDALEAVKEIADAII 234 (339)
T ss_pred cCCCCCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHh----CC---cEEEEcCCchhhHHhHhhCcEEE
Confidence 467889999999987 45678888875689999999999999998885 22 2334332 211111123489988
Q ss_pred ecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 174 AIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 174 ~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
..-. .+ .+....+.|+++|.+++.-
T Consensus 235 ~tv~-~~-----------------~~~~~l~~l~~~G~~v~vG 259 (339)
T COG1064 235 DTVG-PA-----------------TLEPSLKALRRGGTLVLVG 259 (339)
T ss_pred ECCC-hh-----------------hHHHHHHHHhcCCEEEEEC
Confidence 6533 21 5888999999999999865
No 264
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.18 E-value=5.7e-05 Score=57.68 Aligned_cols=60 Identities=27% Similarity=0.286 Sum_probs=48.5
Q ss_pred eEEEEcCCCCCCCCCCCeeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEeccCC
Q 042544 152 CNFVKADFMKMPFPDNSFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEKDLA 220 (305)
Q Consensus 152 ~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~~~~~ 220 (305)
+++++......+|.+++.|+|++.++++|+.-.+... +++++.+.|||||.+-+..+++.
T Consensus 31 vdlvc~As~e~~F~dns~d~iyaeHvlEHlt~~Eg~~---------alkechr~Lrp~G~LriAvPdl~ 90 (185)
T COG4627 31 VDLVCRASNESMFEDNSVDAIYAEHVLEHLTYDEGTS---------ALKECHRFLRPGGKLRIAVPDLK 90 (185)
T ss_pred cchhhhhhhhccCCCcchHHHHHHHHHHHHhHHHHHH---------HHHHHHHHhCcCcEEEEEcCCcc
Confidence 4444444455689999999999999999998766543 79999999999999999876654
No 265
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=97.12 E-value=0.00058 Score=62.23 Aligned_cols=100 Identities=14% Similarity=0.089 Sum_probs=63.8
Q ss_pred CCeEEEEcCCCChHHHHHHhhcCCeEEEEcC--CHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEEecccc
Q 042544 101 GQKVLDVGCGIGGPLREIAQFSSTSVTGLNN--NEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIEAT 178 (305)
Q Consensus 101 ~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~--s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l 178 (305)
-..|+|..+|.|.++..|.+.+ .-|.-|=+ .+..+...- ..|+ +-..+.=.+.++.-+.+||+|.+.+++
T Consensus 366 iRNVMDMnAg~GGFAAAL~~~~-VWVMNVVP~~~~ntL~vIy----dRGL---IG~yhDWCE~fsTYPRTYDLlHA~~lf 437 (506)
T PF03141_consen 366 IRNVMDMNAGYGGFAAALIDDP-VWVMNVVPVSGPNTLPVIY----DRGL---IGVYHDWCEAFSTYPRTYDLLHADGLF 437 (506)
T ss_pred eeeeeeecccccHHHHHhccCC-ceEEEecccCCCCcchhhh----hccc---chhccchhhccCCCCcchhheehhhhh
Confidence 3579999999999999998653 22222211 122222221 1233 222222223355556899999999998
Q ss_pred cccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 179 CHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
....+.-.. ..++-++-|+|+|+|.++|-+
T Consensus 438 s~~~~rC~~--------~~illEmDRILRP~G~~iiRD 467 (506)
T PF03141_consen 438 SLYKDRCEM--------EDILLEMDRILRPGGWVIIRD 467 (506)
T ss_pred hhhcccccH--------HHHHHHhHhhcCCCceEEEec
Confidence 887665332 126889999999999999865
No 266
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=97.12 E-value=0.0012 Score=57.42 Aligned_cols=80 Identities=21% Similarity=0.327 Sum_probs=57.9
Q ss_pred HHHcCCCCCCeEEEEcCCCChHHHHHHh-hcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCC-----C-C
Q 042544 93 ALQLGLKSGQKVLDVGCGIGGPLREIAQ-FSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMP-----F-P 165 (305)
Q Consensus 93 ~~~~~~~~~~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~-----~-~ 165 (305)
...+.+.++..++|.-.|.|..+..+.+ .++++|+|+|.++.+++.|++++... .+++.++++++.++. . .
T Consensus 13 l~~L~~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~--~~r~~~~~~~F~~l~~~l~~~~~ 90 (310)
T PF01795_consen 13 LEALNPKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKF--DDRFIFIHGNFSNLDEYLKELNG 90 (310)
T ss_dssp HHHHT--TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCC--CTTEEEEES-GGGHHHHHHHTTT
T ss_pred HHhhCcCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhc--cceEEEEeccHHHHHHHHHHccC
Confidence 3356677888999999999999999985 46799999999999999998876643 568999999998743 2 3
Q ss_pred CCCeeEEEe
Q 042544 166 DNSFDAVYA 174 (305)
Q Consensus 166 ~~~fD~v~~ 174 (305)
-..+|.|+.
T Consensus 91 ~~~~dgiL~ 99 (310)
T PF01795_consen 91 INKVDGILF 99 (310)
T ss_dssp TS-EEEEEE
T ss_pred CCccCEEEE
Confidence 357999886
No 267
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=97.08 E-value=0.0074 Score=53.08 Aligned_cols=125 Identities=22% Similarity=0.188 Sum_probs=80.7
Q ss_pred HcCCCCCCeEEEEcCCCChHHHHHHhhc-----CCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCC------
Q 042544 95 QLGLKSGQKVLDVGCGIGGPLREIAQFS-----STSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMP------ 163 (305)
Q Consensus 95 ~~~~~~~~~vLDiGcG~G~~~~~l~~~~-----~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~------ 163 (305)
.+++.|+.+|||+++..|.=+..+.+.. ...|++=|.++.-+........... ..+..+...|+..+|
T Consensus 150 ~L~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~-~~~~~v~~~~~~~~p~~~~~~ 228 (375)
T KOG2198|consen 150 ALGVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLP-SPNLLVTNHDASLFPNIYLKD 228 (375)
T ss_pred hcccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccC-Ccceeeecccceecccccccc
Confidence 4678899999999999999888877531 2389999999988877766664433 234445555554433
Q ss_pred ---CCCCCeeEEEec------ccccccCChhhh----hhcCCCCC--cccHHHHHHHHHhCCceEEEeccCC
Q 042544 164 ---FPDNSFDAVYAI------EATCHAPDAAEI----EIGDGLPD--IRSTRKCLEALKQAGFEVIWEKDLA 220 (305)
Q Consensus 164 ---~~~~~fD~v~~~------~~l~~~~~~~~~----~~~~~~~~--~~~l~~~~~~L~~gG~~~i~~~~~~ 220 (305)
.....||-|++- ..+.+.++.-.. +-+.+++. ++.+.+..++||+||.++.++..++
T Consensus 229 ~~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCSLn 300 (375)
T KOG2198|consen 229 GNDKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCSLN 300 (375)
T ss_pred CchhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccCCC
Confidence 122458988862 123332222111 11133333 3468899999999999999987654
No 268
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=96.98 E-value=0.00088 Score=54.52 Aligned_cols=106 Identities=11% Similarity=0.167 Sum_probs=52.1
Q ss_pred CCCeEEEEcCCCChHHHHHHhh-----cCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCC----CC--CCC
Q 042544 100 SGQKVLDVGCGIGGPLREIAQF-----SSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMP----FP--DNS 168 (305)
Q Consensus 100 ~~~~vLDiGcG~G~~~~~l~~~-----~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~----~~--~~~ 168 (305)
++..|+|+|.-.|..+..+|.. ..++|+|+|+...... ++..+...+.++++++++|..+.. .. ...
T Consensus 32 kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~--~~a~e~hp~~~rI~~i~Gds~d~~~~~~v~~~~~~ 109 (206)
T PF04989_consen 32 KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHN--RKAIESHPMSPRITFIQGDSIDPEIVDQVRELASP 109 (206)
T ss_dssp --SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT----S-GGGG----TTEEEEES-SSSTHHHHTSGSS---
T ss_pred CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhc--hHHHhhccccCceEEEECCCCCHHHHHHHHHhhcc
Confidence 3469999999999999888742 3589999999543332 122222234568999999997632 11 111
Q ss_pred eeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEec
Q 042544 169 FDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEK 217 (305)
Q Consensus 169 fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~~ 217 (305)
.+-++.+.=-+|..+.-. ..++....++++|+++++.+.
T Consensus 110 ~~~vlVilDs~H~~~hvl----------~eL~~y~plv~~G~Y~IVeDt 148 (206)
T PF04989_consen 110 PHPVLVILDSSHTHEHVL----------AELEAYAPLVSPGSYLIVEDT 148 (206)
T ss_dssp -SSEEEEESS----SSHH----------HHHHHHHHT--TT-EEEETSH
T ss_pred CCceEEEECCCccHHHHH----------HHHHHhCccCCCCCEEEEEec
Confidence 232222222222222211 147778899999999999763
No 269
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=96.96 E-value=0.02 Score=53.67 Aligned_cols=127 Identities=20% Similarity=0.217 Sum_probs=83.8
Q ss_pred HHHHHHHcCCCCCCeEEEEcCCCChHHHHHHhhc-----CCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCC
Q 042544 89 EHFLALQLGLKSGQKVLDVGCGIGGPLREIAQFS-----STSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMP 163 (305)
Q Consensus 89 ~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-----~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~ 163 (305)
..++...+.+.+..+|.|..||+|.+.....+.. ...++|.|+++.....|+.+.--.|....+....+|-..-|
T Consensus 175 ~~liv~~l~~~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~~~~i~~~dtl~~~ 254 (489)
T COG0286 175 SELIVELLDPEPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEGDANIRHGDTLSNP 254 (489)
T ss_pred HHHHHHHcCCCCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCccccccccccccCC
Confidence 3455556666777899999999999888877542 26799999999999999998877776433456666655433
Q ss_pred C-----CCCCeeEEEeccccc---ccCCh-hhh----hhcCC-----CCC-cccHHHHHHHHHhCCceEEE
Q 042544 164 F-----PDNSFDAVYAIEATC---HAPDA-AEI----EIGDG-----LPD-IRSTRKCLEALKQAGFEVIW 215 (305)
Q Consensus 164 ~-----~~~~fD~v~~~~~l~---~~~~~-~~~----~~~~~-----~~~-~~~l~~~~~~L~~gG~~~i~ 215 (305)
. ..+.||+|++.--+. +.... ... ....+ -.. ..++..+...|+|+|+.-|.
T Consensus 255 ~~~~~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~aaiv 325 (489)
T COG0286 255 KHDDKDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGRAAIV 325 (489)
T ss_pred cccccCCccceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCCceEEEE
Confidence 2 236799999865432 11111 000 00111 112 55789999999999866554
No 270
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=96.89 E-value=0.0025 Score=55.30 Aligned_cols=79 Identities=27% Similarity=0.319 Sum_probs=63.2
Q ss_pred HcCCCCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHH-------HHHHHHHhcCC-CCCeEEEEcCCCCCCC-C
Q 042544 95 QLGLKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQIT-------RGKELNRFAGV-DKTCNFVKADFMKMPF-P 165 (305)
Q Consensus 95 ~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~-------~a~~~~~~~~~-~~~~~~~~~d~~~~~~-~ 165 (305)
.+.+++|..|+|-=.|||.+....+.. |+.|+|.||+-.|+. ..+.++++.|. +.-+.+..+|...-|+ .
T Consensus 203 ~Amv~pGdivyDPFVGTGslLvsaa~F-Ga~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldvl~~D~sn~~~rs 281 (421)
T KOG2671|consen 203 QAMVKPGDIVYDPFVGTGSLLVSAAHF-GAYVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDVLTADFSNPPLRS 281 (421)
T ss_pred hhccCCCCEEecCccccCceeeehhhh-cceeeccccchheeecccCCCcchhHhHHHhCCcchhhheeeecccCcchhh
Confidence 456789999999999999999998887 999999999988886 23556666664 3346788899887654 3
Q ss_pred CCCeeEEEe
Q 042544 166 DNSFDAVYA 174 (305)
Q Consensus 166 ~~~fD~v~~ 174 (305)
...||+|+|
T Consensus 282 n~~fDaIvc 290 (421)
T KOG2671|consen 282 NLKFDAIVC 290 (421)
T ss_pred cceeeEEEe
Confidence 567999998
No 271
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=96.85 E-value=0.014 Score=50.12 Aligned_cols=37 Identities=16% Similarity=0.258 Sum_probs=31.0
Q ss_pred CCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHH
Q 042544 101 GQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITR 138 (305)
Q Consensus 101 ~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~ 138 (305)
..+||--|||.|.++..++.. +..+-|-+.|.-|+--
T Consensus 151 ki~iLvPGaGlGRLa~dla~~-G~~~qGNEfSy~Mli~ 187 (369)
T KOG2798|consen 151 KIRILVPGAGLGRLAYDLACL-GFKCQGNEFSYFMLIC 187 (369)
T ss_pred CceEEecCCCchhHHHHHHHh-cccccccHHHHHHHHH
Confidence 568999999999999999975 6677777998888743
No 272
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=96.82 E-value=0.011 Score=50.79 Aligned_cols=81 Identities=19% Similarity=0.221 Sum_probs=65.6
Q ss_pred HHHHcCCCCCCeEEEEcCCCChHHHHHHhhc--CCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCC-----C
Q 042544 92 LALQLGLKSGQKVLDVGCGIGGPLREIAQFS--STSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMP-----F 164 (305)
Q Consensus 92 l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~-----~ 164 (305)
+...+.+.++...+|.--|.|..+..+.+.. .++++|+|.++.+++.|++++...+ +++.+++.++..+. .
T Consensus 15 ~i~~L~~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~--~r~~~v~~~F~~l~~~l~~~ 92 (314)
T COG0275 15 VVELLAPKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFD--GRVTLVHGNFANLAEALKEL 92 (314)
T ss_pred HHHhcccCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccC--CcEEEEeCcHHHHHHHHHhc
Confidence 3446788888999999999999999999653 3789999999999999999887653 58999999887643 2
Q ss_pred CCCCeeEEEe
Q 042544 165 PDNSFDAVYA 174 (305)
Q Consensus 165 ~~~~fD~v~~ 174 (305)
.-+.+|-|+.
T Consensus 93 ~i~~vDGiL~ 102 (314)
T COG0275 93 GIGKVDGILL 102 (314)
T ss_pred CCCceeEEEE
Confidence 2357888875
No 273
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.81 E-value=0.005 Score=53.61 Aligned_cols=108 Identities=19% Similarity=0.287 Sum_probs=63.9
Q ss_pred CCCeEEEEcCCCChHHHHHHh-hcC-CeEEEEcCCHHHHHHHHHHHHhcCCCCCeEE----EEcCCCCCCCCCCCeeEEE
Q 042544 100 SGQKVLDVGCGIGGPLREIAQ-FSS-TSVTGLNNNEYQITRGKELNRFAGVDKTCNF----VKADFMKMPFPDNSFDAVY 173 (305)
Q Consensus 100 ~~~~vLDiGcG~G~~~~~l~~-~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~----~~~d~~~~~~~~~~fD~v~ 173 (305)
...+|||+|.|.|.-+..+-. .|. ..++.++.|+..-+......+.... ..... ++.|-..+|. ...|++|+
T Consensus 113 apqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t-~~td~r~s~vt~dRl~lp~-ad~ytl~i 190 (484)
T COG5459 113 APQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVST-EKTDWRASDVTEDRLSLPA-ADLYTLAI 190 (484)
T ss_pred CcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhccc-ccCCCCCCccchhccCCCc-cceeehhh
Confidence 346799999998876655543 232 4667777887665554443322221 11222 2233223333 34577777
Q ss_pred ecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEec
Q 042544 174 AIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEK 217 (305)
Q Consensus 174 ~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~~ 217 (305)
..+-+.+...+..+ ...++.++.++.|||.++|.+.
T Consensus 191 ~~~eLl~d~~ek~i--------~~~ie~lw~l~~~gg~lVivEr 226 (484)
T COG5459 191 VLDELLPDGNEKPI--------QVNIERLWNLLAPGGHLVIVER 226 (484)
T ss_pred hhhhhccccCcchH--------HHHHHHHHHhccCCCeEEEEeC
Confidence 66655555544322 1258899999999999999874
No 274
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=96.68 E-value=0.0067 Score=50.09 Aligned_cols=103 Identities=19% Similarity=0.233 Sum_probs=71.3
Q ss_pred HcCCCCCCeEEEEcCCCChHHHHHHhh--cCCeEEEEcCCHHH----HHHHHHHHHhcCCCCCeEEEEcCCCCCC---CC
Q 042544 95 QLGLKSGQKVLDVGCGIGGPLREIAQF--SSTSVTGLNNNEYQ----ITRGKELNRFAGVDKTCNFVKADFMKMP---FP 165 (305)
Q Consensus 95 ~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~~----l~~a~~~~~~~~~~~~~~~~~~d~~~~~---~~ 165 (305)
.+.++|+.+||-+|+++|....++..- +..-|++++.|+.. +..|++ .+|+-.+.-|+.... ..
T Consensus 151 nihikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkk-------RtNiiPIiEDArhP~KYRml 223 (317)
T KOG1596|consen 151 NIHIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKK-------RTNIIPIIEDARHPAKYRML 223 (317)
T ss_pred ceeecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhc-------cCCceeeeccCCCchheeee
Confidence 467889999999999999998888854 56789999998643 334433 356777888887511 11
Q ss_pred CCCeeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEec
Q 042544 166 DNSFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEK 217 (305)
Q Consensus 166 ~~~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~~ 217 (305)
-...|+|++ .++.+++..+ +.-+..-.||+||.++++..
T Consensus 224 VgmVDvIFa-----Dvaqpdq~Ri--------vaLNA~~FLk~gGhfvisik 262 (317)
T KOG1596|consen 224 VGMVDVIFA-----DVAQPDQARI--------VALNAQYFLKNGGHFVISIK 262 (317)
T ss_pred eeeEEEEec-----cCCCchhhhh--------hhhhhhhhhccCCeEEEEEe
Confidence 134566654 4555554432 35567788999999999753
No 275
>PHA01634 hypothetical protein
Probab=96.66 E-value=0.015 Score=43.19 Aligned_cols=47 Identities=13% Similarity=0.078 Sum_probs=41.4
Q ss_pred CCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhc
Q 042544 100 SGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFA 146 (305)
Q Consensus 100 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~ 146 (305)
.+.+|+|||.+.|..++.++......|+++++++...+..++.++..
T Consensus 28 k~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~kl~k~~een~k~n 74 (156)
T PHA01634 28 YQRTIQIVGADCGSSALYFLLRGASFVVQYEKEEKLRKKWEEVCAYF 74 (156)
T ss_pred cCCEEEEecCCccchhhHHhhcCccEEEEeccCHHHHHHHHHHhhhh
Confidence 57899999999999999999765679999999999999998876654
No 276
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=96.55 E-value=0.043 Score=46.20 Aligned_cols=105 Identities=12% Similarity=0.006 Sum_probs=65.3
Q ss_pred CCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHH----HHHhcCCCCCeEEEEcCCCCC---CCCCCC-eeE
Q 042544 100 SGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKE----LNRFAGVDKTCNFVKADFMKM---PFPDNS-FDA 171 (305)
Q Consensus 100 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~----~~~~~~~~~~~~~~~~d~~~~---~~~~~~-fD~ 171 (305)
...+||++|+|+|..+..++...+..|+-.|+.......... ..+.......+.+...+.... .+-... +|+
T Consensus 86 ~~~~vlELGsGtglvG~~aa~~~~~~v~ltD~~~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~Dl 165 (248)
T KOG2793|consen 86 KYINVLELGSGTGLVGILAALLLGAEVVLTDLPKVVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPFDL 165 (248)
T ss_pred cceeEEEecCCccHHHHHHHHHhcceeccCCchhhHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCcccE
Confidence 356799999999987777776568899999986544432211 111111222344444333331 111223 999
Q ss_pred EEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEE
Q 042544 172 VYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIW 215 (305)
Q Consensus 172 v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~ 215 (305)
|+++.++.+-..... .+.-++..|..+|.+++.
T Consensus 166 ilasDvvy~~~~~e~-----------Lv~tla~ll~~~~~i~l~ 198 (248)
T KOG2793|consen 166 ILASDVVYEEESFEG-----------LVKTLAFLLAKDGTIFLA 198 (248)
T ss_pred EEEeeeeecCCcchh-----------HHHHHHHHHhcCCeEEEE
Confidence 999999877666554 477788888888844443
No 277
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=96.21 E-value=0.012 Score=52.97 Aligned_cols=105 Identities=16% Similarity=0.086 Sum_probs=75.3
Q ss_pred CCCeEEEEcCCCChHHHHHHhh-c-CCeEEEEcCCHHHHHHHHHHHHhcCCCC-CeEEEEcCCCCCC-CCCCCeeEEEec
Q 042544 100 SGQKVLDVGCGIGGPLREIAQF-S-STSVTGLNNNEYQITRGKELNRFAGVDK-TCNFVKADFMKMP-FPDNSFDAVYAI 175 (305)
Q Consensus 100 ~~~~vLDiGcG~G~~~~~l~~~-~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~-~~~~~~~d~~~~~-~~~~~fD~v~~~ 175 (305)
.+.+|||.=+|+|.=++.++.. + ..+|+.-|+|+..++..+++++..++.. ++++.+.|+..+- .....||+|=.-
T Consensus 49 ~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll~~~~~~fD~IDlD 128 (377)
T PF02005_consen 49 GPIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVLLYSRQERFDVIDLD 128 (377)
T ss_dssp S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHHCHSTT-EEEEEE-
T ss_pred CCceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHHhhhccccCCEEEeC
Confidence 3568999999999999988843 3 3699999999999999999999998876 6889999987632 246789999321
Q ss_pred ccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEeccC
Q 042544 176 EATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEKDL 219 (305)
Q Consensus 176 ~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~~~~ 219 (305)
-+..+ ..+++.+.+.++.||++.++..+.
T Consensus 129 ----PfGSp-----------~pfldsA~~~v~~gGll~vTaTD~ 157 (377)
T PF02005_consen 129 ----PFGSP-----------APFLDSALQAVKDGGLLCVTATDT 157 (377)
T ss_dssp -----SS-------------HHHHHHHHHHEEEEEEEEEEE--H
T ss_pred ----CCCCc-----------cHhHHHHHHHhhcCCEEEEecccc
Confidence 11111 227999999999999999986543
No 278
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=96.13 E-value=0.053 Score=50.81 Aligned_cols=101 Identities=19% Similarity=0.247 Sum_probs=66.1
Q ss_pred CCCCCeEEEEcCCC-ChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCC-----------CC--
Q 042544 98 LKSGQKVLDVGCGI-GGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMK-----------MP-- 163 (305)
Q Consensus 98 ~~~~~~vLDiGcG~-G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~-----------~~-- 163 (305)
..++.+||=+|||. |..+...++..+++|+++|.++..++.+++. | .+++..|..+ +.
T Consensus 162 ~~pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aesl----G----A~~v~i~~~e~~~~~~gya~~~s~~ 233 (509)
T PRK09424 162 KVPPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVESM----G----AEFLELDFEEEGGSGDGYAKVMSEE 233 (509)
T ss_pred CcCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHc----C----CeEEEeccccccccccchhhhcchh
Confidence 45789999999994 6666677766688999999999999888763 2 2222222111 00
Q ss_pred --------CCC--CCeeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEec
Q 042544 164 --------FPD--NSFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEK 217 (305)
Q Consensus 164 --------~~~--~~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~~ 217 (305)
+.+ ..+|+|+..-....-+.+.. ..+++.+.+||||.++....
T Consensus 234 ~~~~~~~~~~~~~~gaDVVIetag~pg~~aP~l-----------it~~~v~~mkpGgvIVdvg~ 286 (509)
T PRK09424 234 FIKAEMALFAEQAKEVDIIITTALIPGKPAPKL-----------ITAEMVASMKPGSVIVDLAA 286 (509)
T ss_pred HHHHHHHHHHhccCCCCEEEECCCCCcccCcch-----------HHHHHHHhcCCCCEEEEEcc
Confidence 011 35899987654433222321 25899999999998776543
No 279
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=96.11 E-value=0.017 Score=47.01 Aligned_cols=76 Identities=17% Similarity=0.128 Sum_probs=45.6
Q ss_pred CccccccCCCCccHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCCChHHHHHHh-h--cCCeEEEEcCCHHHHHHHHHHHH
Q 042544 68 ESFHFAPRWKGESLRESIKRHEHFLALQLGLKSGQKVLDVGCGIGGPLREIAQ-F--SSTSVTGLNNNEYQITRGKELNR 144 (305)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~-~--~~~~v~gvD~s~~~l~~a~~~~~ 144 (305)
.-++..|.+...+++-+.+-.+..+. .+.-..+-++-|-+||.|+++.-+.- + .=..|+|-|+++.+++.|++++.
T Consensus 20 ~VL~sApG~p~FPVRLAsEi~qR~l~-~l~~~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~ 98 (246)
T PF11599_consen 20 RVLYSAPGFPAFPVRLASEIFQRALH-YLEGKGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLS 98 (246)
T ss_dssp TSS--BTTB----HHHHHHHHHHHHC-TSSS-S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHH
T ss_pred eEEecCCCCCCccHHHHHHHHHHHHH-hhcCCCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhh
Confidence 33556677777776665554433222 23334556899999999998877762 2 12689999999999999998864
No 280
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=96.03 E-value=0.034 Score=45.81 Aligned_cols=82 Identities=12% Similarity=0.175 Sum_probs=55.6
Q ss_pred CCCeEEEEcCCCChHHHHHH-hhcCCeEEEEcCCHHHHHHHHHHHHhc-CCCCCeEEEEcCCCC--CC---CCCCCeeEE
Q 042544 100 SGQKVLDVGCGIGGPLREIA-QFSSTSVTGLNNNEYQITRGKELNRFA-GVDKTCNFVKADFMK--MP---FPDNSFDAV 172 (305)
Q Consensus 100 ~~~~vLDiGcG~G~~~~~l~-~~~~~~v~gvD~s~~~l~~a~~~~~~~-~~~~~~~~~~~d~~~--~~---~~~~~fD~v 172 (305)
++.++||||.|.-..--.+. +..+.+.+|.|+++..++.|+..+... ++...+++....-.+ ++ -.++.||++
T Consensus 78 ~~i~~LDIGvGAnCIYPliG~~eYgwrfvGseid~~sl~sA~~ii~~N~~l~~~I~lr~qk~~~~if~giig~nE~yd~t 157 (292)
T COG3129 78 KNIRILDIGVGANCIYPLIGVHEYGWRFVGSEIDSQSLSSAKAIISANPGLERAIRLRRQKDSDAIFNGIIGKNERYDAT 157 (292)
T ss_pred CceEEEeeccCcccccccccceeecceeecCccCHHHHHHHHHHHHcCcchhhheeEEeccCccccccccccccceeeeE
Confidence 56789999988543322232 223789999999999999999988776 555556655432222 11 125789999
Q ss_pred Eeccccccc
Q 042544 173 YAIEATCHA 181 (305)
Q Consensus 173 ~~~~~l~~~ 181 (305)
+|+-.+|.-
T Consensus 158 lCNPPFh~s 166 (292)
T COG3129 158 LCNPPFHDS 166 (292)
T ss_pred ecCCCcchh
Confidence 998777643
No 281
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=95.94 E-value=0.19 Score=41.97 Aligned_cols=111 Identities=9% Similarity=0.045 Sum_probs=72.9
Q ss_pred CCCCCeEEEEcCCCChHHHHHHh-h----cCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCC-CC-CCCCCee
Q 042544 98 LKSGQKVLDVGCGIGGPLREIAQ-F----SSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMK-MP-FPDNSFD 170 (305)
Q Consensus 98 ~~~~~~vLDiGcG~G~~~~~l~~-~----~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~-~~-~~~~~fD 170 (305)
+..+.+.+|+|+|+..-+..+.. . ...+++.+|+|...+...-+.+......-.+.-+++|.+. +. .+..+=-
T Consensus 76 ~~g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l~v~~l~~~~~~~La~~~~~~~R 155 (321)
T COG4301 76 ITGACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGLEVNALCGDYELALAELPRGGRR 155 (321)
T ss_pred hhCcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCCeEeehhhhHHHHHhcccCCCeE
Confidence 34467999999999987777763 2 1268999999999997655544443333345667777764 21 2222222
Q ss_pred -EEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEec
Q 042544 171 -AVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEK 217 (305)
Q Consensus 171 -~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~~ 217 (305)
.++....+..+...+... ++..+...|+||-++++...
T Consensus 156 l~~flGStlGN~tp~e~~~---------Fl~~l~~a~~pGd~~LlGvD 194 (321)
T COG4301 156 LFVFLGSTLGNLTPGECAV---------FLTQLRGALRPGDYFLLGVD 194 (321)
T ss_pred EEEEecccccCCChHHHHH---------HHHHHHhcCCCcceEEEecc
Confidence 233344677665544432 79999999999999988654
No 282
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=95.89 E-value=0.075 Score=42.54 Aligned_cols=106 Identities=10% Similarity=0.150 Sum_probs=69.7
Q ss_pred CCCeEEEEcCCCChHHHHHHhh---cC--CeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCC------CCCC
Q 042544 100 SGQKVLDVGCGIGGPLREIAQF---SS--TSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPF------PDNS 168 (305)
Q Consensus 100 ~~~~vLDiGcG~G~~~~~l~~~---~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~------~~~~ 168 (305)
+...|+|+|.-.|..++.+|.. .+ .+|+++|++-..++.+-.. .+++.|++++..+... -.+.
T Consensus 69 ~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e------~p~i~f~egss~dpai~eqi~~~~~~ 142 (237)
T COG3510 69 QPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAARE------VPDILFIEGSSTDPAIAEQIRRLKNE 142 (237)
T ss_pred CCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhc------CCCeEEEeCCCCCHHHHHHHHHHhcC
Confidence 4568999999999988888742 34 7999999987776543322 3579999999876321 0122
Q ss_pred eeEEE-ecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEeccCCCC
Q 042544 169 FDAVY-AIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEKDLAPD 222 (305)
Q Consensus 169 fD~v~-~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~~~~~~~ 222 (305)
+--|+ |..+-|+....- ..++-+..+|..|-++++.+.++...
T Consensus 143 y~kIfvilDsdHs~~hvL-----------Ael~~~~pllsaG~Y~vVeDs~v~dl 186 (237)
T COG3510 143 YPKIFVILDSDHSMEHVL-----------AELKLLAPLLSAGDYLVVEDSNVNDL 186 (237)
T ss_pred CCcEEEEecCCchHHHHH-----------HHHHHhhhHhhcCceEEEecccccCC
Confidence 33344 334444443321 13666778888888999888766543
No 283
>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=95.85 E-value=0.0094 Score=54.31 Aligned_cols=107 Identities=19% Similarity=0.221 Sum_probs=82.5
Q ss_pred CCCCeEEEEcCCCChHHHHHHh-hcC-CeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCC----CCCCCCeeEE
Q 042544 99 KSGQKVLDVGCGIGGPLREIAQ-FSS-TSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKM----PFPDNSFDAV 172 (305)
Q Consensus 99 ~~~~~vLDiGcG~G~~~~~l~~-~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~----~~~~~~fD~v 172 (305)
.++.+|||.=|+||.-++.++. .++ .+|++-|.++..++..+++++..+..+.++..+.|+..+ +.....||+|
T Consensus 108 ~~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM~~~~~~~~~FDvI 187 (525)
T KOG1253|consen 108 EKSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANVLMYEHPMVAKFFDVI 187 (525)
T ss_pred cCcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCchhhcccccchHHHHHHhccccccccceE
Confidence 4567999999999999999984 343 589999999999999999998887777788888888752 2335789998
Q ss_pred EecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEeccCC
Q 042544 173 YAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEKDLA 220 (305)
Q Consensus 173 ~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~~~~~ 220 (305)
- +..- |.+ -.+++.+.+.++.||.+.+...+..
T Consensus 188 D-------LDPy-------Gs~-s~FLDsAvqav~~gGLL~vT~TD~a 220 (525)
T KOG1253|consen 188 D-------LDPY-------GSP-SPFLDSAVQAVRDGGLLCVTCTDMA 220 (525)
T ss_pred e-------cCCC-------CCc-cHHHHHHHHHhhcCCEEEEEecchH
Confidence 3 2111 111 1279999999999999999876554
No 284
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=95.84 E-value=0.027 Score=48.06 Aligned_cols=113 Identities=23% Similarity=0.244 Sum_probs=79.0
Q ss_pred CCCCCeEEEEcCCCChHHHHHHhhc-CCeEEEEcCCHHHHHHHHHHHHhcCC---CCCeEEEEcCCCCC--CCCCCCeeE
Q 042544 98 LKSGQKVLDVGCGIGGPLREIAQFS-STSVTGLNNNEYQITRGKELNRFAGV---DKTCNFVKADFMKM--PFPDNSFDA 171 (305)
Q Consensus 98 ~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~---~~~~~~~~~d~~~~--~~~~~~fD~ 171 (305)
.....+||=||-|.|.+.+..+.++ -..+.-+|+....++..++....... .+++.+..+|...+ ....+.||+
T Consensus 119 ~~npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~dV 198 (337)
T KOG1562|consen 119 HPNPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFDV 198 (337)
T ss_pred CCCCCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCceE
Confidence 4556799999999999999988543 35888999999999988887654421 45788999987653 244688999
Q ss_pred EEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEec
Q 042544 172 VYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEK 217 (305)
Q Consensus 172 v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~~ 217 (305)
|+.-..=.-.|...... -.+...+.+.||++|++++...
T Consensus 199 ii~dssdpvgpa~~lf~-------~~~~~~v~~aLk~dgv~~~q~e 237 (337)
T KOG1562|consen 199 IITDSSDPVGPACALFQ-------KPYFGLVLDALKGDGVVCTQGE 237 (337)
T ss_pred EEEecCCccchHHHHHH-------HHHHHHHHHhhCCCcEEEEecc
Confidence 98632211111111111 1257888999999999888653
No 285
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=95.84 E-value=0.013 Score=50.01 Aligned_cols=96 Identities=20% Similarity=0.231 Sum_probs=72.3
Q ss_pred CCCeEEEEcCCCChHHH-HHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEEecccc
Q 042544 100 SGQKVLDVGCGIGGPLR-EIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIEAT 178 (305)
Q Consensus 100 ~~~~vLDiGcG~G~~~~-~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l 178 (305)
.+..|+|+=+|-|+++. .+.......|+++|.+|..++..++.++..+...++..+.+|-.. +-++...|-|..
T Consensus 194 ~~eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp~svEaLrR~~~~N~V~~r~~i~~gd~R~-~~~~~~AdrVnL---- 268 (351)
T KOG1227|consen 194 DGEVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNPWSVEALRRNAEANNVMDRCRITEGDNRN-PKPRLRADRVNL---- 268 (351)
T ss_pred ccchhhhhhcccceEEeehhhccCccEEEEEecCHHHHHHHHHHHHhcchHHHHHhhhccccc-cCccccchheee----
Confidence 45789999999999999 455655679999999999999999998888776677777887765 334677787764
Q ss_pred cccCChhhhhhcCCCCCcccHHHHHHHHHhCCc
Q 042544 179 CHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGF 211 (305)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~ 211 (305)
.-+|..+. -.--+.++|+|.|-
T Consensus 269 GLlPSse~-----------~W~~A~k~Lk~egg 290 (351)
T KOG1227|consen 269 GLLPSSEQ-----------GWPTAIKALKPEGG 290 (351)
T ss_pred cccccccc-----------chHHHHHHhhhcCC
Confidence 34454433 35567788887554
No 286
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=95.78 E-value=0.044 Score=46.71 Aligned_cols=79 Identities=18% Similarity=0.184 Sum_probs=49.0
Q ss_pred CCeEEEEcCCCChHHHHHHhhc---------CCeEEEEcCCHHHHHHHHHHHHhc-----CCCCCeEEEEcCCCCCCCCC
Q 042544 101 GQKVLDVGCGIGGPLREIAQFS---------STSVTGLNNNEYQITRGKELNRFA-----GVDKTCNFVKADFMKMPFPD 166 (305)
Q Consensus 101 ~~~vLDiGcG~G~~~~~l~~~~---------~~~v~gvD~s~~~l~~a~~~~~~~-----~~~~~~~~~~~d~~~~~~~~ 166 (305)
..+|+|+|+|+|.++..+.+.. ..+++-||+|+.+.+.-++++... ....++.+ ..++.+.|
T Consensus 19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~~~~~~~~~~~~i~w-~~~l~~~p--- 94 (252)
T PF02636_consen 19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSEHAPKDTEFGDPIRW-LDDLEEVP--- 94 (252)
T ss_dssp -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCCH---STTTCGCEEE-ESSGGCS----
T ss_pred CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhhhcccccccCCccch-hhhhhccc---
Confidence 4699999999999999987531 258999999999988777776542 12223444 33443333
Q ss_pred CCeeEEEecccccccCCh
Q 042544 167 NSFDAVYAIEATCHAPDA 184 (305)
Q Consensus 167 ~~fD~v~~~~~l~~~~~~ 184 (305)
..-+|+++.++..+|-.
T Consensus 95 -~~~~iiaNE~~DAlP~~ 111 (252)
T PF02636_consen 95 -FPGFIIANELFDALPVD 111 (252)
T ss_dssp -CCEEEEEESSGGGS--E
T ss_pred -CCEEEEEeeehhcCcee
Confidence 24566666666665543
No 287
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=95.76 E-value=0.21 Score=41.77 Aligned_cols=81 Identities=17% Similarity=0.191 Sum_probs=49.0
Q ss_pred HHHHHHcCCCCCCeEEEEcCCCChHHHHHH-hhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCC-CCCC-C
Q 042544 90 HFLALQLGLKSGQKVLDVGCGIGGPLREIA-QFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMK-MPFP-D 166 (305)
Q Consensus 90 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~-~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~-~~~~-~ 166 (305)
.++.....+ .|++||=+|=+. ..++.++ ..+..+|+.+|+++..++..++.++..|++ ++.++.|+.. +|-. .
T Consensus 35 ~~~~~~gdL-~gk~il~lGDDD-LtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl~--i~~~~~DlR~~LP~~~~ 110 (243)
T PF01861_consen 35 ALMAERGDL-EGKRILFLGDDD-LTSLALALTGLPKRITVVDIDERLLDFINRVAEEEGLP--IEAVHYDLRDPLPEELR 110 (243)
T ss_dssp HHHHHTT-S-TT-EEEEES-TT--HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT----EEEE---TTS---TTTS
T ss_pred HHHHhcCcc-cCCEEEEEcCCc-HHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCCc--eEEEEecccccCCHHHh
Confidence 344444344 578999998543 3444444 345789999999999999999999988885 9999999986 3321 3
Q ss_pred CCeeEEEe
Q 042544 167 NSFDAVYA 174 (305)
Q Consensus 167 ~~fD~v~~ 174 (305)
++||++++
T Consensus 111 ~~fD~f~T 118 (243)
T PF01861_consen 111 GKFDVFFT 118 (243)
T ss_dssp S-BSEEEE
T ss_pred cCCCEEEe
Confidence 78999986
No 288
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=95.65 E-value=0.072 Score=47.51 Aligned_cols=100 Identities=21% Similarity=0.330 Sum_probs=60.3
Q ss_pred cCCCCCCeEEEEcCC-CChHHHHHHhhcCC-eEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEE
Q 042544 96 LGLKSGQKVLDVGCG-IGGPLREIAQFSST-SVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVY 173 (305)
Q Consensus 96 ~~~~~~~~vLDiGcG-~G~~~~~l~~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~ 173 (305)
....++.+||=+||| .|..+..+++..++ +|+++|.++..++.+++. |...-+.....++.+.....+.+|+|+
T Consensus 165 ~~~~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~l----Ga~~vi~~~~~~~~~~~~~~g~~D~vi 240 (343)
T PRK09880 165 AGDLQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREM----GADKLVNPQNDDLDHYKAEKGYFDVSF 240 (343)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHc----CCcEEecCCcccHHHHhccCCCCCEEE
Confidence 344578899988876 44566666655566 699999999998887653 322111111112211111123478886
Q ss_pred ecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 174 AIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 174 ~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
-.-. .+. .+....+.|++||.+++..
T Consensus 241 d~~G-----~~~------------~~~~~~~~l~~~G~iv~~G 266 (343)
T PRK09880 241 EVSG-----HPS------------SINTCLEVTRAKGVMVQVG 266 (343)
T ss_pred ECCC-----CHH------------HHHHHHHHhhcCCEEEEEc
Confidence 4321 111 4778889999999988764
No 289
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=95.63 E-value=0.086 Score=46.88 Aligned_cols=84 Identities=14% Similarity=-0.013 Sum_probs=43.7
Q ss_pred CCCCeEEEEcCCCChHHHHHHhh---------c--------CCeEEEEcCCHHHHHHHHH-------HHHhcCCCCCeEE
Q 042544 99 KSGQKVLDVGCGIGGPLREIAQF---------S--------STSVTGLNNNEYQITRGKE-------LNRFAGVDKTCNF 154 (305)
Q Consensus 99 ~~~~~vLDiGcG~G~~~~~l~~~---------~--------~~~v~gvD~s~~~l~~a~~-------~~~~~~~~~~~~~ 154 (305)
+...+|+|+||.+|..++.+... . ..+|+--|+-..--...-+ .... ...--+.-
T Consensus 15 ~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~-~~~~f~~g 93 (334)
T PF03492_consen 15 PKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKK-FRNYFVSG 93 (334)
T ss_dssp TTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHH-TTSEEEEE
T ss_pred CCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCC-CceEEEEe
Confidence 45579999999999988876531 0 1377777764322211111 1111 11111233
Q ss_pred EEcCCCCCCCCCCCeeEEEecccccccCC
Q 042544 155 VKADFMKMPFPDNSFDAVYAIEATCHAPD 183 (305)
Q Consensus 155 ~~~d~~~~~~~~~~fD~v~~~~~l~~~~~ 183 (305)
+.+.+..--+|+++.|++++..++|++..
T Consensus 94 vpgSFy~rLfP~~Svh~~~Ss~alHWLS~ 122 (334)
T PF03492_consen 94 VPGSFYGRLFPSNSVHFGHSSYALHWLSQ 122 (334)
T ss_dssp EES-TTS--S-TT-EEEEEEES-TTB-SS
T ss_pred cCchhhhccCCCCceEEEEEechhhhccc
Confidence 45666665588999999999999999865
No 290
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=95.61 E-value=0.071 Score=38.46 Aligned_cols=32 Identities=22% Similarity=0.278 Sum_probs=26.3
Q ss_pred CCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCC
Q 042544 100 SGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNN 132 (305)
Q Consensus 100 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s 132 (305)
+...-+|||||.|.+..-|... +..-.|+|.-
T Consensus 58 ~~~~FVDlGCGNGLLV~IL~~E-Gy~G~GiD~R 89 (112)
T PF07757_consen 58 KFQGFVDLGCGNGLLVYILNSE-GYPGWGIDAR 89 (112)
T ss_pred CCCceEEccCCchHHHHHHHhC-CCCccccccc
Confidence 4567999999999888887765 7888999973
No 291
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=95.58 E-value=0.15 Score=46.33 Aligned_cols=108 Identities=19% Similarity=0.258 Sum_probs=67.7
Q ss_pred HHcCCCCCCeEEEEcCCC-ChHHHHHHhhcCC-eEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcC-CCC-C-CC-CCC
Q 042544 94 LQLGLKSGQKVLDVGCGI-GGPLREIAQFSST-SVTGLNNNEYQITRGKELNRFAGVDKTCNFVKAD-FMK-M-PF-PDN 167 (305)
Q Consensus 94 ~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d-~~~-~-~~-~~~ 167 (305)
....+.++.+||.+|||. |..+..+++..+. +|+++|.++..++.+++.. +. ..+.....+ +.. + .+ ...
T Consensus 178 ~~~~~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~---~~-~vi~~~~~~~~~~~l~~~~~~~ 253 (386)
T cd08283 178 ELAEVKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHL---GA-ETINFEEVDDVVEALRELTGGR 253 (386)
T ss_pred hhccCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcC---Cc-EEEcCCcchHHHHHHHHHcCCC
Confidence 345677889999999987 8888888865565 6999999999998887642 11 111111111 110 0 11 223
Q ss_pred CeeEEEeccc-----------cccc----CChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 168 SFDAVYAIEA-----------TCHA----PDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 168 ~fD~v~~~~~-----------l~~~----~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
.+|+|+-.-. +.|. ++... .+.++.+.|+++|.+++..
T Consensus 254 ~~D~vld~vg~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~l~~~G~iv~~g 306 (386)
T cd08283 254 GPDVCIDAVGMEAHGSPLHKAEQALLKLETDRPD-----------ALREAIQAVRKGGTVSIIG 306 (386)
T ss_pred CCCEEEECCCCcccccccccccccccccccCchH-----------HHHHHHHHhccCCEEEEEc
Confidence 5888876421 1111 12211 5888999999999988864
No 292
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=95.40 E-value=0.081 Score=47.63 Aligned_cols=83 Identities=17% Similarity=0.127 Sum_probs=47.2
Q ss_pred CCeEEEEcCCCChHHHHHHhh----------------cCCeEEEEcCCHHHHHHHHHHHHh--------------cCCCC
Q 042544 101 GQKVLDVGCGIGGPLREIAQF----------------SSTSVTGLNNNEYQITRGKELNRF--------------AGVDK 150 (305)
Q Consensus 101 ~~~vLDiGcG~G~~~~~l~~~----------------~~~~v~gvD~s~~~l~~a~~~~~~--------------~~~~~ 150 (305)
..+|+|+|||+|..+..+... |..+|..-|+-..-....-+.+.. .+...
T Consensus 64 ~~~iaDlGcs~G~ntl~~vs~iI~~i~~~~~~~~~~~pe~qv~~nDLP~NDFNtlF~~L~~~~~~~~~~~~~~~~~~~~~ 143 (386)
T PLN02668 64 PFTAVDLGCSSGSNTIHIIDVIVKHMSKRYESAGLDPPEFSAFFSDLPSNDFNTLFQLLPPLANYGGSMEECLAASGHRS 143 (386)
T ss_pred ceeEEEecCCCCccHHHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCCHHHHHhhchhhhhhhcchhhhccccCCCc
Confidence 568999999999877655311 235666666643222211111110 00000
Q ss_pred -CeEEEEcCCCCCCCCCCCeeEEEecccccccCC
Q 042544 151 -TCNFVKADFMKMPFPDNSFDAVYAIEATCHAPD 183 (305)
Q Consensus 151 -~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~ 183 (305)
-+.-+.+.+..--||.++.+++++..++|++..
T Consensus 144 ~f~~gvpGSFY~RLfP~~Slh~~~Ss~slHWLS~ 177 (386)
T PLN02668 144 YFAAGVPGSFYRRLFPARSIDVFHSAFSLHWLSQ 177 (386)
T ss_pred eEEEecCccccccccCCCceEEEEeeccceeccc
Confidence 011222444444488999999999999998864
No 293
>PRK11524 putative methyltransferase; Provisional
Probab=95.35 E-value=0.044 Score=47.62 Aligned_cols=46 Identities=20% Similarity=0.064 Sum_probs=40.7
Q ss_pred CCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHh
Q 042544 99 KSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRF 145 (305)
Q Consensus 99 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~ 145 (305)
.+|..|||.-||+|..+....+. +-+.+|+|++++.++.|++++..
T Consensus 207 ~~GD~VLDPF~GSGTT~~AA~~l-gR~~IG~Ei~~~Y~~~a~~Rl~~ 252 (284)
T PRK11524 207 NPGDIVLDPFAGSFTTGAVAKAS-GRKFIGIEINSEYIKMGLRRLDV 252 (284)
T ss_pred CCCCEEEECCCCCcHHHHHHHHc-CCCEEEEeCCHHHHHHHHHHHHh
Confidence 58899999999999888876664 88999999999999999998753
No 294
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=95.31 E-value=0.08 Score=46.84 Aligned_cols=58 Identities=21% Similarity=0.290 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHcCCCCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHH
Q 042544 84 SIKRHEHFLALQLGLKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKE 141 (305)
Q Consensus 84 ~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~ 141 (305)
.+++..+.+.......+-..|+|+|.|.|.++..++-..+..|.+||-|....+.|++
T Consensus 137 Ei~~lselvSsi~~f~gi~~vvD~GaG~G~LSr~lSl~y~lsV~aIegsq~~~~ra~r 194 (476)
T KOG2651|consen 137 EIRRLSELVSSISDFTGIDQVVDVGAGQGHLSRFLSLGYGLSVKAIEGSQRLVERAQR 194 (476)
T ss_pred HHHHHHHHHHHHHhhcCCCeeEEcCCCchHHHHHHhhccCceEEEeccchHHHHHHHH
Confidence 3444445555544445667899999999999999994448999999999877776655
No 295
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=95.19 E-value=0.13 Score=45.60 Aligned_cols=104 Identities=15% Similarity=0.097 Sum_probs=75.4
Q ss_pred CCeEEEEcCCCChHHHHHH-hhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCC-CCCeeEEEecccc
Q 042544 101 GQKVLDVGCGIGGPLREIA-QFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFP-DNSFDAVYAIEAT 178 (305)
Q Consensus 101 ~~~vLDiGcG~G~~~~~l~-~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~fD~v~~~~~l 178 (305)
..+|||.=+|||.=++.++ +.+..+|+.-|+||..++.+++++..+.. .....+..|+..+-.. ...||+|=.
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~~-~~~~v~n~DAN~lm~~~~~~fd~IDi---- 127 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNSG-EDAEVINKDANALLHELHRAFDVIDI---- 127 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcCc-ccceeecchHHHHHHhcCCCccEEec----
Confidence 5799999999999999998 44334999999999999999999987732 2455566777653222 366888721
Q ss_pred cccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEeccCC
Q 042544 179 CHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEKDLA 220 (305)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~~~~~ 220 (305)
.-+..+ ..+++.+.+.++.+|++.++..+..
T Consensus 128 DPFGSP-----------aPFlDaA~~s~~~~G~l~vTATD~a 158 (380)
T COG1867 128 DPFGSP-----------APFLDAALRSVRRGGLLCVTATDTA 158 (380)
T ss_pred CCCCCC-----------chHHHHHHHHhhcCCEEEEEecccc
Confidence 011111 2379999999999999999765543
No 296
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=95.17 E-value=0.28 Score=43.28 Aligned_cols=97 Identities=24% Similarity=0.292 Sum_probs=63.4
Q ss_pred HcCCCCCCeEEEEcCC-CChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCC------CCCCC
Q 042544 95 QLGLKSGQKVLDVGCG-IGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKM------PFPDN 167 (305)
Q Consensus 95 ~~~~~~~~~vLDiGcG-~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~------~~~~~ 167 (305)
...+.++.+||..||| .|..+..+++..+.+|++++.++...+.+++ .+.. .+..+-... .....
T Consensus 160 ~~~~~~~~~vli~g~g~vG~~~~~la~~~G~~V~~~~~s~~~~~~~~~----~g~~----~~~~~~~~~~~~~~~~~~~~ 231 (338)
T cd08254 160 AGEVKPGETVLVIGLGGLGLNAVQIAKAMGAAVIAVDIKEEKLELAKE----LGAD----EVLNSLDDSPKDKKAAGLGG 231 (338)
T ss_pred ccCCCCCCEEEEECCcHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHH----hCCC----EEEcCCCcCHHHHHHHhcCC
Confidence 3456788899998876 4777788886668899999999998877754 2321 122111110 12345
Q ss_pred CeeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 168 SFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 168 ~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
.+|+|+..... . . .++++.+.|+++|.++...
T Consensus 232 ~~D~vid~~g~-----~-~-----------~~~~~~~~l~~~G~~v~~g 263 (338)
T cd08254 232 GFDVIFDFVGT-----Q-P-----------TFEDAQKAVKPGGRIVVVG 263 (338)
T ss_pred CceEEEECCCC-----H-H-----------HHHHHHHHhhcCCEEEEEC
Confidence 68888743211 1 1 4788999999999988753
No 297
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=95.11 E-value=0.057 Score=46.69 Aligned_cols=67 Identities=15% Similarity=0.080 Sum_probs=49.1
Q ss_pred eEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCC--CCCeeEEEecc
Q 042544 103 KVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFP--DNSFDAVYAIE 176 (305)
Q Consensus 103 ~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~--~~~fD~v~~~~ 176 (305)
+|+|+-||.|.++..+.+.....+.++|+++..++..+.+... .++++|+.++... ...+|+++...
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~~~a~~~~~~N~~~-------~~~~~Di~~~~~~~~~~~~D~l~~gp 70 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAGFEIVAANEIDKSAAETYEANFPN-------KLIEGDITKIDEKDFIPDIDLLTGGF 70 (275)
T ss_pred cEEEEccCcchHHHHHHHcCCEEEEEEeCCHHHHHHHHHhCCC-------CCccCccccCchhhcCCCCCEEEeCC
Confidence 6999999999998888764234577899999999887776421 2566777775422 24689999754
No 298
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=94.99 E-value=0.053 Score=45.04 Aligned_cols=42 Identities=21% Similarity=0.246 Sum_probs=33.6
Q ss_pred CCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHH
Q 042544 99 KSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKE 141 (305)
Q Consensus 99 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~ 141 (305)
.+|..|||.-||+|..+....+. +-+.+|+|+++...+.|++
T Consensus 190 ~~gdiVlDpF~GSGTT~~aa~~l-~R~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 190 NPGDIVLDPFAGSGTTAVAAEEL-GRRYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp -TT-EEEETT-TTTHHHHHHHHT-T-EEEEEESSHHHHHHHHH
T ss_pred ccceeeehhhhccChHHHHHHHc-CCeEEEEeCCHHHHHHhcC
Confidence 57899999999999888877664 8899999999999998864
No 299
>PRK13699 putative methylase; Provisional
Probab=94.99 E-value=0.076 Score=44.47 Aligned_cols=47 Identities=19% Similarity=0.092 Sum_probs=41.0
Q ss_pred CCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhc
Q 042544 99 KSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFA 146 (305)
Q Consensus 99 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~ 146 (305)
.+|..|||.-||+|..+....+. +.+.+|+|+++...+.+.+++...
T Consensus 162 ~~g~~vlDpf~Gsgtt~~aa~~~-~r~~~g~e~~~~y~~~~~~r~~~~ 208 (227)
T PRK13699 162 HPNAIVLDPFAGSGSTCVAALQS-GRRYIGIELLEQYHRAGQQRLAAV 208 (227)
T ss_pred CCCCEEEeCCCCCCHHHHHHHHc-CCCEEEEecCHHHHHHHHHHHHHH
Confidence 57889999999999888877664 889999999999999999887653
No 300
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=94.88 E-value=0.18 Score=46.64 Aligned_cols=101 Identities=15% Similarity=0.158 Sum_probs=67.6
Q ss_pred CeEEEEcCCCChHHHHHHh---h--cCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEEecc
Q 042544 102 QKVLDVGCGIGGPLREIAQ---F--SSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIE 176 (305)
Q Consensus 102 ~~vLDiGcG~G~~~~~l~~---~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~ 176 (305)
..|+=+|+|.|-+.....+ . -..++++++-+|.++-..+. ....+.+.+++++..|+..++.|..+.|++++-
T Consensus 369 tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~-~n~~~W~~~Vtii~~DMR~w~ap~eq~DI~VSE- 446 (649)
T KOG0822|consen 369 TVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQN-RNFECWDNRVTIISSDMRKWNAPREQADIIVSE- 446 (649)
T ss_pred EEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhh-hchhhhcCeeEEEeccccccCCchhhccchHHH-
Confidence 4678899999976655432 1 24689999999988876655 333345678999999999988666788988753
Q ss_pred cccccCChhhhhhcCCCCCcccHHHHHHHHHhCCce
Q 042544 177 ATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFE 212 (305)
Q Consensus 177 ~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~ 212 (305)
.+..+.|.+.- ...+..+.+.|||.|+.
T Consensus 447 LLGSFGDNELS--------PECLDG~q~fLkpdgIs 474 (649)
T KOG0822|consen 447 LLGSFGDNELS--------PECLDGAQKFLKPDGIS 474 (649)
T ss_pred hhccccCccCC--------HHHHHHHHhhcCCCceE
Confidence 33333332210 11466666777777644
No 301
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=94.85 E-value=0.2 Score=44.33 Aligned_cols=52 Identities=21% Similarity=0.240 Sum_probs=40.4
Q ss_pred HcCCCCCCeEEEEcCCCChHHHHHHhh-----c----CCeEEEEcCCHHHHHHHHHHHHhc
Q 042544 95 QLGLKSGQKVLDVGCGIGGPLREIAQF-----S----STSVTGLNNNEYQITRGKELNRFA 146 (305)
Q Consensus 95 ~~~~~~~~~vLDiGcG~G~~~~~l~~~-----~----~~~v~gvD~s~~~l~~a~~~~~~~ 146 (305)
.++.+....++|+|.|+|.++..+.+. | ..++.-|++|+...+.=++.++..
T Consensus 72 ~~g~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~~ 132 (370)
T COG1565 72 ELGRPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKAT 132 (370)
T ss_pred HhcCCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhcc
Confidence 344555678999999999999988743 2 479999999999987766666543
No 302
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=94.82 E-value=0.035 Score=45.65 Aligned_cols=98 Identities=13% Similarity=0.102 Sum_probs=64.2
Q ss_pred CCeEEEEcCCCChHHHHHHhhc------C----CeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCC-------
Q 042544 101 GQKVLDVGCGIGGPLREIAQFS------S----TSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMP------- 163 (305)
Q Consensus 101 ~~~vLDiGcG~G~~~~~l~~~~------~----~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~------- 163 (305)
-.+++|+++..|.|+..+.+.. . ..+++||+.+-. .+ +.+..+++|+....
T Consensus 42 v~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~Ma-----------PI-~GV~qlq~DIT~~stae~Ii~ 109 (294)
T KOG1099|consen 42 VKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMA-----------PI-EGVIQLQGDITSASTAEAIIE 109 (294)
T ss_pred hhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCC-----------cc-CceEEeecccCCHhHHHHHHH
Confidence 3689999999999999998531 1 139999996532 12 35778889988632
Q ss_pred -CCCCCeeEEEeccc-----ccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEE
Q 042544 164 -FPDNSFDAVYAIEA-----TCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIW 215 (305)
Q Consensus 164 -~~~~~fD~v~~~~~-----l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~ 215 (305)
|..+..|+|+|-++ +|.+.+--+.++ -+..+.-...+|+|||.++-.
T Consensus 110 hfggekAdlVvcDGAPDvTGlHd~DEy~Q~qL-----llaAl~i~t~Vlk~Gg~FVaK 162 (294)
T KOG1099|consen 110 HFGGEKADLVVCDGAPDVTGLHDLDEYVQAQL-----LLAALNIATCVLKPGGSFVAK 162 (294)
T ss_pred HhCCCCccEEEeCCCCCccccccHHHHHHHHH-----HHHHHHHHhheecCCCeeehh
Confidence 55568899999764 333332211110 012355556789999988764
No 303
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=94.67 E-value=0.45 Score=41.46 Aligned_cols=100 Identities=18% Similarity=0.220 Sum_probs=65.2
Q ss_pred HcCCCCCCeEEEEcCCC-ChHHHHHHhh-cCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEc-C-CCC------CCC
Q 042544 95 QLGLKSGQKVLDVGCGI-GGPLREIAQF-SSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKA-D-FMK------MPF 164 (305)
Q Consensus 95 ~~~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~-d-~~~------~~~ 164 (305)
...+++|.+||=+|+|+ |..+...|+. ...+|+.+|+++..++.|++. |.. .+..... + ... --+
T Consensus 164 ~~~vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~~----Ga~-~~~~~~~~~~~~~~~~~v~~~~ 238 (354)
T KOG0024|consen 164 RAGVKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKKF----GAT-VTDPSSHKSSPQELAELVEKAL 238 (354)
T ss_pred hcCcccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHHh----CCe-EEeeccccccHHHHHHHHHhhc
Confidence 56788999999999995 5556556643 347999999999999999883 322 1111111 1 010 012
Q ss_pred CCCCeeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 165 PDNSFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 165 ~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
....+|+.+.+..++- .++.....+++||.+++..
T Consensus 239 g~~~~d~~~dCsG~~~-----------------~~~aai~a~r~gGt~vlvg 273 (354)
T KOG0024|consen 239 GKKQPDVTFDCSGAEV-----------------TIRAAIKATRSGGTVVLVG 273 (354)
T ss_pred cccCCCeEEEccCchH-----------------HHHHHHHHhccCCEEEEec
Confidence 2345788776543321 5777889999999977764
No 304
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=94.41 E-value=0.17 Score=47.46 Aligned_cols=96 Identities=20% Similarity=0.288 Sum_probs=62.0
Q ss_pred CCCCeEEEEcCCC-ChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCC-----------C--C-
Q 042544 99 KSGQKVLDVGCGI-GGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMK-----------M--P- 163 (305)
Q Consensus 99 ~~~~~vLDiGcG~-G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~-----------~--~- 163 (305)
.++.+||=+|||. |..+..++...++.|+++|.++..++.++.. | .+++..|..+ + +
T Consensus 162 vp~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~~l----G----a~~v~v~~~e~g~~~~gYa~~~s~~~ 233 (511)
T TIGR00561 162 VPPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQSM----G----AEFLELDFKEEGGSGDGYAKVMSEEF 233 (511)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHc----C----CeEEeccccccccccccceeecCHHH
Confidence 3568999999994 4566666655688999999999987777652 2 2333333211 0 0
Q ss_pred -------CC--CCCeeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceE
Q 042544 164 -------FP--DNSFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEV 213 (305)
Q Consensus 164 -------~~--~~~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~ 213 (305)
++ -..+|+|+..-.+..-+.+.. ..+++.+.+|||+.++
T Consensus 234 ~~~~~~~~~e~~~~~DIVI~TalipG~~aP~L-----------it~emv~~MKpGsvIV 281 (511)
T TIGR00561 234 IAAEMELFAAQAKEVDIIITTALIPGKPAPKL-----------ITEEMVDSMKAGSVIV 281 (511)
T ss_pred HHHHHHHHHHHhCCCCEEEECcccCCCCCCee-----------ehHHHHhhCCCCCEEE
Confidence 11 145898877655444444422 5788899999998755
No 305
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=94.07 E-value=0.031 Score=43.42 Aligned_cols=107 Identities=21% Similarity=0.185 Sum_probs=59.6
Q ss_pred CCeEEEEcCCCChHHHHHH-hhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCe-EEEEcCCCC-CCCCCCCeeEEEeccc
Q 042544 101 GQKVLDVGCGIGGPLREIA-QFSSTSVTGLNNNEYQITRGKELNRFAGVDKTC-NFVKADFMK-MPFPDNSFDAVYAIEA 177 (305)
Q Consensus 101 ~~~vLDiGcG~G~~~~~l~-~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~-~~~~~d~~~-~~~~~~~fD~v~~~~~ 177 (305)
+++++=+|+..= |...++ .+..++|..+|.++--++. . ..+++ .+...|+.. +.--.++||.+.|..+
T Consensus 2 ~~~g~V~GS~~P-wvEv~aL~~GA~~iltveyn~L~i~~--~------~~dr~ssi~p~df~~~~~~y~~~fD~~as~~s 72 (177)
T PF03269_consen 2 GKSGLVVGSMQP-WVEVMALQHGAAKILTVEYNKLEIQE--E------FRDRLSSILPVDFAKNWQKYAGSFDFAASFSS 72 (177)
T ss_pred CceEEEEecCCc-hhhHHHHHcCCceEEEEeecccccCc--c------cccccccccHHHHHHHHHHhhccchhhheech
Confidence 467777887743 333334 4445678888875422211 0 01111 111222221 1112477999999999
Q ss_pred ccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 178 TCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 178 l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
++|..-...-.-....-.++.+.++.++|||||.+++..
T Consensus 73 iEh~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~v 111 (177)
T PF03269_consen 73 IEHFGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGV 111 (177)
T ss_pred hccccccccCCCCCccccHHHHHHHHHhhccCCeEEEEe
Confidence 988753321111111223456888999999999999976
No 306
>KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis]
Probab=93.75 E-value=0.22 Score=45.40 Aligned_cols=107 Identities=14% Similarity=0.145 Sum_probs=65.3
Q ss_pred CCeEEEEcCCCCh--HHHHHH-hhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEc-CCCC--CCCC-CCCeeEEE
Q 042544 101 GQKVLDVGCGIGG--PLREIA-QFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKA-DFMK--MPFP-DNSFDAVY 173 (305)
Q Consensus 101 ~~~vLDiGcG~G~--~~~~l~-~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~-d~~~--~~~~-~~~fD~v~ 173 (305)
...++|+|.|.|. ++.... ....-.++.||.|..|+.......+.. -..+-.++.. -+.. +|.. .+.||+|+
T Consensus 201 pd~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~~-~~~g~~~v~~~~~~r~~~pi~~~~~yDlvi 279 (491)
T KOG2539|consen 201 PDLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKNLRDG-SHIGEPIVRKLVFHRQRLPIDIKNGYDLVI 279 (491)
T ss_pred hHHHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHhhcCh-hhcCchhccccchhcccCCCCcccceeeEE
Confidence 4578888877654 444444 333568999999999999887766541 1101111111 1111 3433 45599999
Q ss_pred ecccccccCChhhhhhcCCCCCcccHHH-HHHHHHhCCceEEEe
Q 042544 174 AIEATCHAPDAAEIEIGDGLPDIRSTRK-CLEALKQAGFEVIWE 216 (305)
Q Consensus 174 ~~~~l~~~~~~~~~~~~~~~~~~~~l~~-~~~~L~~gG~~~i~~ 216 (305)
+.+.++++...... +...++ .+...++||++++.+
T Consensus 280 ~ah~l~~~~s~~~R--------~~v~~s~~r~~~r~g~~lViIe 315 (491)
T KOG2539|consen 280 CAHKLHELGSKFSR--------LDVPESLWRKTDRSGYFLVIIE 315 (491)
T ss_pred eeeeeeccCCchhh--------hhhhHHHHHhccCCCceEEEEe
Confidence 99999998877422 112333 345567788888765
No 307
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=93.68 E-value=0.74 Score=40.81 Aligned_cols=94 Identities=17% Similarity=0.177 Sum_probs=60.3
Q ss_pred HcCCCCCCeEEEEcCC-CChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEE
Q 042544 95 QLGLKSGQKVLDVGCG-IGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVY 173 (305)
Q Consensus 95 ~~~~~~~~~vLDiGcG-~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~ 173 (305)
...+.++.+||=.|+| .|..+..+++..+++|++++.++.-++.+++. |.. .++ |..+. ..+.+|+++
T Consensus 160 ~~~~~~g~~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~~~~~~~a~~~----Ga~---~vi--~~~~~--~~~~~d~~i 228 (329)
T TIGR02822 160 RASLPPGGRLGLYGFGGSAHLTAQVALAQGATVHVMTRGAAARRLALAL----GAA---SAG--GAYDT--PPEPLDAAI 228 (329)
T ss_pred hcCCCCCCEEEEEcCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHh----CCc---eec--ccccc--CcccceEEE
Confidence 3567789999999975 34455566655688999999999888777663 332 111 11111 123578665
Q ss_pred ecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 174 AIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 174 ~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
..... .. .+....+.|+++|.+++.-
T Consensus 229 ~~~~~-----~~------------~~~~~~~~l~~~G~~v~~G 254 (329)
T TIGR02822 229 LFAPA-----GG------------LVPPALEALDRGGVLAVAG 254 (329)
T ss_pred ECCCc-----HH------------HHHHHHHhhCCCcEEEEEe
Confidence 33211 11 4778889999999988754
No 308
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=93.60 E-value=0.012 Score=42.55 Aligned_cols=39 Identities=18% Similarity=0.281 Sum_probs=27.5
Q ss_pred CeeEEEeccccccc--C--ChhhhhhcCCCCCcccHHHHHHHHHhCCceEEE
Q 042544 168 SFDAVYAIEATCHA--P--DAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIW 215 (305)
Q Consensus 168 ~fD~v~~~~~l~~~--~--~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~ 215 (305)
.||+|+|..+..++ . |... ..+++.+.+.|+|||.+++.
T Consensus 1 ~yDvilclSVtkWIHLn~GD~Gl---------~~~f~~~~~~L~pGG~lilE 43 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHLNWGDEGL---------KRFFRRIYSLLRPGGILILE 43 (110)
T ss_dssp -EEEEEEES-HHHHHHHHHHHHH---------HHHHHHHHHHEEEEEEEEEE
T ss_pred CccEEEEEEeeEEEEecCcCHHH---------HHHHHHHHHhhCCCCEEEEe
Confidence 48999998874433 2 2222 22799999999999999994
No 309
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=93.59 E-value=0.27 Score=41.67 Aligned_cols=96 Identities=22% Similarity=0.258 Sum_probs=60.5
Q ss_pred CCCCCCeEEEEcCCC-ChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCC-----CCCCCCee
Q 042544 97 GLKSGQKVLDVGCGI-GGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKM-----PFPDNSFD 170 (305)
Q Consensus 97 ~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~-----~~~~~~fD 170 (305)
.+.++.+||-.|+|+ |..+..+++..+.+|++++.++...+.+++. +.. .++...-... ....+.+|
T Consensus 131 ~~~~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~----g~~---~~~~~~~~~~~~~~~~~~~~~~d 203 (271)
T cd05188 131 VLKPGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSDEKLELAKEL----GAD---HVIDYKEEDLEEELRLTGGGGAD 203 (271)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHh----CCc---eeccCCcCCHHHHHHHhcCCCCC
Confidence 346789999999985 6666677765689999999998877766442 211 1111110000 01235689
Q ss_pred EEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 171 AVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 171 ~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
+++.... ... .+..+.+.|+++|.++...
T Consensus 204 ~vi~~~~-----~~~------------~~~~~~~~l~~~G~~v~~~ 232 (271)
T cd05188 204 VVIDAVG-----GPE------------TLAQALRLLRPGGRIVVVG 232 (271)
T ss_pred EEEECCC-----CHH------------HHHHHHHhcccCCEEEEEc
Confidence 8875321 111 3777889999999988754
No 310
>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]
Probab=93.56 E-value=0.063 Score=50.37 Aligned_cols=36 Identities=25% Similarity=0.320 Sum_probs=30.5
Q ss_pred CCCCCeEEEEcCCCChHHHHHHhh--cCCeEEEEcCCH
Q 042544 98 LKSGQKVLDVGCGIGGPLREIAQF--SSTSVTGLNNNE 133 (305)
Q Consensus 98 ~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~ 133 (305)
+.++..|||+||.+|.|....++. .+.-|+|+|+-|
T Consensus 42 l~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~p 79 (780)
T KOG1098|consen 42 LEKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVP 79 (780)
T ss_pred ccccchheeeccCCcHHHHHHHHhCCCCceEEEeeeee
Confidence 457889999999999999888854 468999999965
No 311
>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.
Probab=93.51 E-value=1.4 Score=37.81 Aligned_cols=104 Identities=12% Similarity=-0.026 Sum_probs=67.8
Q ss_pred CeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCC--CCCeEEEEcCCCC-C-------CCCCCCeeE
Q 042544 102 QKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGV--DKTCNFVKADFMK-M-------PFPDNSFDA 171 (305)
Q Consensus 102 ~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~--~~~~~~~~~d~~~-~-------~~~~~~fD~ 171 (305)
..|+.+|||-=.-...+....+.+++=+|. |.+++.-++.+...+. ..+.+++..|+.. + .+..+..-+
T Consensus 83 ~qvV~LGaGlDTr~~Rl~~~~~~~~~EvD~-P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~w~~~L~~~gfd~~~ptl 161 (260)
T TIGR00027 83 RQVVILGAGLDTRAYRLPWPDGTRVFEVDQ-PAVLAFKEKVLAELGAEPPAHRRAVPVDLRQDWPAALAAAGFDPTAPTA 161 (260)
T ss_pred cEEEEeCCccccHHHhcCCCCCCeEEECCC-hHHHHHHHHHHHHcCCCCCCceEEeccCchhhHHHHHHhCCCCCCCCee
Confidence 469999999755555553222466666776 5566666666665432 3567889999862 1 122234457
Q ss_pred EEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEE
Q 042544 172 VYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIW 215 (305)
Q Consensus 172 v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~ 215 (305)
+++-+++.+++...... +++.+.+...||+.+++.
T Consensus 162 ~i~EGvl~YL~~~~v~~---------ll~~i~~~~~~gs~l~~d 196 (260)
T TIGR00027 162 WLWEGLLMYLTEEAVDA---------LLAFIAELSAPGSRLAFD 196 (260)
T ss_pred eeecchhhcCCHHHHHH---------HHHHHHHhCCCCcEEEEE
Confidence 88888999998876543 577777776688777764
No 312
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=93.37 E-value=0.49 Score=42.76 Aligned_cols=50 Identities=12% Similarity=0.012 Sum_probs=37.9
Q ss_pred HcCCCCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHh
Q 042544 95 QLGLKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRF 145 (305)
Q Consensus 95 ~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~ 145 (305)
.+.+.++.+||-|.+|.......+... ..+|++||+||.++...+-+.+.
T Consensus 30 aL~i~~~d~vl~ItSaG~N~L~yL~~~-P~~I~aVDlNp~Q~aLleLKlAa 79 (380)
T PF11899_consen 30 ALNIGPDDRVLTITSAGCNALDYLLAG-PKRIHAVDLNPAQNALLELKLAA 79 (380)
T ss_pred HhCCCCCCeEEEEccCCchHHHHHhcC-CceEEEEeCCHHHHHHHHHHHHH
Confidence 578899999999977754444444454 58999999999999877665543
No 313
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=92.79 E-value=1.2 Score=39.90 Aligned_cols=96 Identities=20% Similarity=0.246 Sum_probs=62.4
Q ss_pred CCCCCeEEEEcCCC-ChHHHHHHhh-cCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCC------CCCCC-CC
Q 042544 98 LKSGQKVLDVGCGI-GGPLREIAQF-SSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMK------MPFPD-NS 168 (305)
Q Consensus 98 ~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~------~~~~~-~~ 168 (305)
..++.+|+=+|||+ |.++..+++. ...+|+.+|.++.-++.|++.... +.+.....+ ..... ..
T Consensus 166 ~~~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~-------~~~~~~~~~~~~~~~~~~t~g~g 238 (350)
T COG1063 166 VRPGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGA-------DVVVNPSEDDAGAEILELTGGRG 238 (350)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCC-------eEeecCccccHHHHHHHHhCCCC
Confidence 34455999999995 6666666654 347999999999999999885321 122211110 01111 25
Q ss_pred eeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEec
Q 042544 169 FDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEK 217 (305)
Q Consensus 169 fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~~ 217 (305)
+|+++-.-. .+ .++..+.++++++|.+++.-.
T Consensus 239 ~D~vie~~G-----~~------------~~~~~ai~~~r~gG~v~~vGv 270 (350)
T COG1063 239 ADVVIEAVG-----SP------------PALDQALEALRPGGTVVVVGV 270 (350)
T ss_pred CCEEEECCC-----CH------------HHHHHHHHHhcCCCEEEEEec
Confidence 898874432 11 158899999999999988653
No 314
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=92.75 E-value=0.46 Score=42.89 Aligned_cols=101 Identities=21% Similarity=0.288 Sum_probs=60.3
Q ss_pred HcCCCCCCeEEEEcCC-CChHHHHHHhhcCC-eEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCC-C-CCCCCCee
Q 042544 95 QLGLKSGQKVLDVGCG-IGGPLREIAQFSST-SVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMK-M-PFPDNSFD 170 (305)
Q Consensus 95 ~~~~~~~~~vLDiGcG-~G~~~~~l~~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~-~-~~~~~~fD 170 (305)
...+.++.+||=.|+| .|..+..+++..++ +|+++|.++..++.+++. |...-+.....|..+ + ....+.+|
T Consensus 186 ~~~i~~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~~----Ga~~~i~~~~~~~~~~i~~~~~~g~d 261 (371)
T cd08281 186 TAGVRPGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALAREL----GATATVNAGDPNAVEQVRELTGGGVD 261 (371)
T ss_pred ccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHc----CCceEeCCCchhHHHHHHHHhCCCCC
Confidence 4567788899988876 34555666655577 699999999988877652 321111111111100 0 01123578
Q ss_pred EEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 171 AVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 171 ~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
+|+-.- .... .+....+.|+++|.+++..
T Consensus 262 ~vid~~-----G~~~------------~~~~~~~~l~~~G~iv~~G 290 (371)
T cd08281 262 YAFEMA-----GSVP------------ALETAYEITRRGGTTVTAG 290 (371)
T ss_pred EEEECC-----CChH------------HHHHHHHHHhcCCEEEEEc
Confidence 887431 1111 4777889999999988754
No 315
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=92.70 E-value=0.78 Score=40.60 Aligned_cols=93 Identities=17% Similarity=0.310 Sum_probs=58.1
Q ss_pred CCCeEEEEcCCC-ChHHHHHHhhcCC-eEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcC---CCCCCCCCCCeeEEEe
Q 042544 100 SGQKVLDVGCGI-GGPLREIAQFSST-SVTGLNNNEYQITRGKELNRFAGVDKTCNFVKAD---FMKMPFPDNSFDAVYA 174 (305)
Q Consensus 100 ~~~~vLDiGcG~-G~~~~~l~~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d---~~~~~~~~~~fD~v~~ 174 (305)
++.+||-.|||. |..+..+++..+. ++++++.++...+.+++. +.. .++..+ +.......+.+|+++.
T Consensus 165 ~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~~~~~----g~~---~vi~~~~~~~~~~~~~~~~vd~vld 237 (339)
T cd08232 165 AGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVARAM----GAD---ETVNLARDPLAAYAADKGDFDVVFE 237 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHc----CCC---EEEcCCchhhhhhhccCCCccEEEE
Confidence 788999988875 6666777765576 899999998888765542 221 122111 1111111234888875
Q ss_pred cccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 175 IEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 175 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
.... . . .++.+.+.|+++|.++...
T Consensus 238 ~~g~-----~-~-----------~~~~~~~~L~~~G~~v~~g 262 (339)
T cd08232 238 ASGA-----P-A-----------ALASALRVVRPGGTVVQVG 262 (339)
T ss_pred CCCC-----H-H-----------HHHHHHHHHhcCCEEEEEe
Confidence 4221 1 1 3778899999999987643
No 316
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=92.32 E-value=0.71 Score=41.31 Aligned_cols=101 Identities=16% Similarity=0.220 Sum_probs=63.1
Q ss_pred HcCCCCCCeEEEEcC--CCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEc-CCCC-C-CCCCCCe
Q 042544 95 QLGLKSGQKVLDVGC--GIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKA-DFMK-M-PFPDNSF 169 (305)
Q Consensus 95 ~~~~~~~~~vLDiGc--G~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~-d~~~-~-~~~~~~f 169 (305)
...+.++.+||=.|+ |.|..+..+++..+++|++++.++...+.+++. .|...-+..... +... + ....+.+
T Consensus 153 ~~~~~~g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~~~~~k~~~~~~~---lGa~~vi~~~~~~~~~~~i~~~~~~gv 229 (348)
T PLN03154 153 VCSPKKGDSVFVSAASGAVGQLVGQLAKLHGCYVVGSAGSSQKVDLLKNK---LGFDEAFNYKEEPDLDAALKRYFPEGI 229 (348)
T ss_pred hcCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHh---cCCCEEEECCCcccHHHHHHHHCCCCc
Confidence 356788999999997 377788888876688999999998887766532 232211111101 1111 0 0112358
Q ss_pred eEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 170 DAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 170 D~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
|+|+-.-. .. .+..+.+.|+++|.+++.-
T Consensus 230 D~v~d~vG-----~~-------------~~~~~~~~l~~~G~iv~~G 258 (348)
T PLN03154 230 DIYFDNVG-----GD-------------MLDAALLNMKIHGRIAVCG 258 (348)
T ss_pred EEEEECCC-----HH-------------HHHHHHHHhccCCEEEEEC
Confidence 88874311 11 4778899999999988653
No 317
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=92.31 E-value=0.55 Score=42.02 Aligned_cols=96 Identities=19% Similarity=0.197 Sum_probs=57.4
Q ss_pred CCCCCeEEEEcCC-CChHHHHHHhhcCCeEEEEcC---CHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEE
Q 042544 98 LKSGQKVLDVGCG-IGGPLREIAQFSSTSVTGLNN---NEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVY 173 (305)
Q Consensus 98 ~~~~~~vLDiGcG-~G~~~~~l~~~~~~~v~gvD~---s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~ 173 (305)
..++.+||=+|+| .|..+..+++..+++|++++. ++.-++.+++ .|.. .+.....+..+.. ..+.+|+|+
T Consensus 170 ~~~g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~~----~Ga~-~v~~~~~~~~~~~-~~~~~d~vi 243 (355)
T cd08230 170 TWNPRRALVLGAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVEE----LGAT-YVNSSKTPVAEVK-LVGEFDLII 243 (355)
T ss_pred cCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHH----cCCE-EecCCccchhhhh-hcCCCCEEE
Confidence 4578899999986 355666677666789999987 6777666654 2321 1111011111000 123578877
Q ss_pred ecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 174 AIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 174 ~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
-.-. ... .+.+..+.|+++|.+++..
T Consensus 244 d~~g-----~~~------------~~~~~~~~l~~~G~~v~~G 269 (355)
T cd08230 244 EATG-----VPP------------LAFEALPALAPNGVVILFG 269 (355)
T ss_pred ECcC-----CHH------------HHHHHHHHccCCcEEEEEe
Confidence 5321 111 3778889999999887654
No 318
>TIGR00497 hsdM type I restriction system adenine methylase (hsdM). Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).
Probab=92.24 E-value=1.2 Score=42.15 Aligned_cols=116 Identities=20% Similarity=0.251 Sum_probs=68.2
Q ss_pred CCCeEEEEcCCCChHHHHHHhhc-----CCeEEEEcCCHHHHHHHHHHHHhcCCC-CCeEEEEcCCCC-CCC-CCCCeeE
Q 042544 100 SGQKVLDVGCGIGGPLREIAQFS-----STSVTGLNNNEYQITRGKELNRFAGVD-KTCNFVKADFMK-MPF-PDNSFDA 171 (305)
Q Consensus 100 ~~~~vLDiGcG~G~~~~~l~~~~-----~~~v~gvD~s~~~l~~a~~~~~~~~~~-~~~~~~~~d~~~-~~~-~~~~fD~ 171 (305)
++..|.|..||+|.+........ ...++|.+..+.+...+..+....+.. +......+|-.. ..+ ....||.
T Consensus 217 p~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~~~~~~t~~~~~~dtl~~~d~~~~~~~D~ 296 (501)
T TIGR00497 217 TVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILHNIDYANFNIINADTLTTKEWENENGFEV 296 (501)
T ss_pred CCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHcCCCccccCcccCCcCCCccccccccCCE
Confidence 56789999999999987654321 246999999999999998875444432 122333344322 222 2356898
Q ss_pred EEecccccc------cCC---hhhhhhcCCC-----CCcccHHHHHHHHHhCCceEEE
Q 042544 172 VYAIEATCH------APD---AAEIEIGDGL-----PDIRSTRKCLEALKQAGFEVIW 215 (305)
Q Consensus 172 v~~~~~l~~------~~~---~~~~~~~~~~-----~~~~~l~~~~~~L~~gG~~~i~ 215 (305)
|++.-.+.- .+. ....-....+ ....++..+...|++||...+.
T Consensus 297 v~~NpPf~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~afi~h~~~~L~~gG~~aiI 354 (501)
T TIGR00497 297 VVSNPPYSISWAGDKKSNLVSDVRFKDAGTLAPNSKADLAFVLHALYVLGQEGTAAIV 354 (501)
T ss_pred EeecCCcccccccccccccccccchhcccCCCCCchhhHHHHHHHHHhcCCCCeEEEE
Confidence 887543221 110 0000000001 1344788888999999976554
No 319
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=91.81 E-value=0.49 Score=46.32 Aligned_cols=105 Identities=16% Similarity=0.128 Sum_probs=57.4
Q ss_pred CCCeEEEEcCCCChHHHHHHh-h-------c-----CCeEEEEcCCH---HHHHHH-----------HHHHHhc-----C
Q 042544 100 SGQKVLDVGCGIGGPLREIAQ-F-------S-----STSVTGLNNNE---YQITRG-----------KELNRFA-----G 147 (305)
Q Consensus 100 ~~~~vLDiGcG~G~~~~~l~~-~-------~-----~~~v~gvD~s~---~~l~~a-----------~~~~~~~-----~ 147 (305)
+.-+|||+|-|+|.......+ . + ..+++++|..| ..+..+ ++..... |
T Consensus 57 ~~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g 136 (662)
T PRK01747 57 RRFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPG 136 (662)
T ss_pred CcEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCC
Confidence 346899999999996665542 1 2 24788998633 333322 2222111 1
Q ss_pred C------CC--CeEEEEcCCCC-CCCCCCCeeEEEeccc-ccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceE
Q 042544 148 V------DK--TCNFVKADFMK-MPFPDNSFDAVYAIEA-TCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEV 213 (305)
Q Consensus 148 ~------~~--~~~~~~~d~~~-~~~~~~~fD~v~~~~~-l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~ 213 (305)
+ .. .+++..+|+.+ ++--+..+|+++.-.. -..-|+. ....++..+.++++|||.+.
T Consensus 137 ~~~~~~~~~~~~l~l~~gd~~~~~~~~~~~~d~~~lD~FsP~~np~~---------W~~~~~~~l~~~~~~~~~~~ 203 (662)
T PRK01747 137 CHRLLFDDGRVTLDLWFGDANELLPQLDARADAWFLDGFAPAKNPDM---------WSPNLFNALARLARPGATLA 203 (662)
T ss_pred ceEEEecCCcEEEEEEecCHHHHHHhccccccEEEeCCCCCccChhh---------ccHHHHHHHHHHhCCCCEEE
Confidence 1 01 34567788765 2211356899986432 1122221 12235777788877777765
No 320
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=91.61 E-value=0.77 Score=41.16 Aligned_cols=101 Identities=20% Similarity=0.282 Sum_probs=60.1
Q ss_pred HcCCCCCCeEEEEcCC-CChHHHHHHhhcCC-eEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCC-C-C-CCCCCe
Q 042544 95 QLGLKSGQKVLDVGCG-IGGPLREIAQFSST-SVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMK-M-P-FPDNSF 169 (305)
Q Consensus 95 ~~~~~~~~~vLDiGcG-~G~~~~~l~~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~-~-~-~~~~~f 169 (305)
...+.++.+||=.||| .|..+..+++..+. +|+++|.++..++.+++ .|...-+.....+..+ + . .....+
T Consensus 171 ~~~~~~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~----~Ga~~~i~~~~~~~~~~i~~~~~~~g~ 246 (358)
T TIGR03451 171 TGGVKRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWARE----FGATHTVNSSGTDPVEAIRALTGGFGA 246 (358)
T ss_pred ccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----cCCceEEcCCCcCHHHHHHHHhCCCCC
Confidence 3466789999999875 34556666665576 59999999998887754 2321101111111100 0 0 112357
Q ss_pred eEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 170 DAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 170 D~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
|+|+-.- .... .+....+.|+++|.+++.-
T Consensus 247 d~vid~~-----g~~~------------~~~~~~~~~~~~G~iv~~G 276 (358)
T TIGR03451 247 DVVIDAV-----GRPE------------TYKQAFYARDLAGTVVLVG 276 (358)
T ss_pred CEEEECC-----CCHH------------HHHHHHHHhccCCEEEEEC
Confidence 8886421 1111 4777889999999988754
No 321
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=91.47 E-value=0.16 Score=43.34 Aligned_cols=39 Identities=28% Similarity=0.274 Sum_probs=32.0
Q ss_pred CCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHH
Q 042544 99 KSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQIT 137 (305)
Q Consensus 99 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~ 137 (305)
..+++|||+|||+|.............++..|.|...++
T Consensus 115 ~~~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na~vl~ 153 (282)
T KOG2920|consen 115 FSGKRVLELGCGAALPGIFAFVKGAVSVHFQDFNAEVLR 153 (282)
T ss_pred ecCceeEecCCcccccchhhhhhccceeeeEecchhhee
Confidence 367899999999999888887553478899999887773
No 322
>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]
Probab=91.41 E-value=0.13 Score=46.33 Aligned_cols=63 Identities=24% Similarity=0.178 Sum_probs=53.3
Q ss_pred CCCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCC-eEEEEcCCCC
Q 042544 98 LKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKT-CNFVKADFMK 161 (305)
Q Consensus 98 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~-~~~~~~d~~~ 161 (305)
.++|..|.|+-||.|-++..++.. +++|++-|.++++++..+.++....+.+. ++.+..|+..
T Consensus 247 fk~gevv~D~FaGvGPfa~Pa~kK-~crV~aNDLNpesik~Lk~ni~lNkv~~~~iei~Nmda~~ 310 (495)
T KOG2078|consen 247 FKPGEVVCDVFAGVGPFALPAAKK-GCRVYANDLNPESIKWLKANIKLNKVDPSAIEIFNMDAKD 310 (495)
T ss_pred cCCcchhhhhhcCcCccccchhhc-CcEEEecCCCHHHHHHHHHhccccccchhheeeecccHHH
Confidence 467889999999999999999875 79999999999999999998876666544 7777777765
No 323
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=91.13 E-value=1.7 Score=35.65 Aligned_cols=84 Identities=15% Similarity=0.143 Sum_probs=56.9
Q ss_pred HHHHHHcCCCCCCeEEEEcCCCCh--HHHHHH---hhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCC-C-C
Q 042544 90 HFLALQLGLKSGQKVLDVGCGIGG--PLREIA---QFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFM-K-M 162 (305)
Q Consensus 90 ~~l~~~~~~~~~~~vLDiGcG~G~--~~~~l~---~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~-~-~ 162 (305)
+++..+..-.....++++.|+.|. .++.|+ ++.+++++.|-+.+..+...++.+...+..+.++|+.++.. + +
T Consensus 31 EfISAlAAG~nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~~~~vEfvvg~~~e~~~ 110 (218)
T PF07279_consen 31 EFISALAAGWNAKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGLSDVVEFVVGEAPEEVM 110 (218)
T ss_pred HHHHHHhccccceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhccccccceEEecCCHHHHH
Confidence 455544444456789999766442 344444 45689999999998888888888877777666799998853 2 3
Q ss_pred CCCCCCeeEEEe
Q 042544 163 PFPDNSFDAVYA 174 (305)
Q Consensus 163 ~~~~~~fD~v~~ 174 (305)
+. -...|+++.
T Consensus 111 ~~-~~~iDF~vV 121 (218)
T PF07279_consen 111 PG-LKGIDFVVV 121 (218)
T ss_pred hh-ccCCCEEEE
Confidence 21 234787764
No 324
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=91.08 E-value=1.3 Score=39.03 Aligned_cols=101 Identities=17% Similarity=0.290 Sum_probs=63.1
Q ss_pred HHcCCCCCCeEEEEcC--CCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEc-CCCC-C-CCCCCC
Q 042544 94 LQLGLKSGQKVLDVGC--GIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKA-DFMK-M-PFPDNS 168 (305)
Q Consensus 94 ~~~~~~~~~~vLDiGc--G~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~-d~~~-~-~~~~~~ 168 (305)
....+.++.+||=.|+ |.|..+..+++..+.+|++++.++...+.+++ .|...-+..... +... . ....+.
T Consensus 132 ~~~~~~~g~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~s~~~~~~~~~----lGa~~vi~~~~~~~~~~~~~~~~~~g 207 (325)
T TIGR02825 132 EICGVKGGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKVAYLKK----LGFDVAFNYKTVKSLEETLKKASPDG 207 (325)
T ss_pred HHhCCCCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH----cCCCEEEeccccccHHHHHHHhCCCC
Confidence 3456788999998884 47778888887668899999999888777654 233210111110 1111 0 011245
Q ss_pred eeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 169 FDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 169 fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
+|+|+-.- ... .+....++|+++|.++...
T Consensus 208 vdvv~d~~-----G~~-------------~~~~~~~~l~~~G~iv~~G 237 (325)
T TIGR02825 208 YDCYFDNV-----GGE-------------FSNTVIGQMKKFGRIAICG 237 (325)
T ss_pred eEEEEECC-----CHH-------------HHHHHHHHhCcCcEEEEec
Confidence 88887421 111 3677889999999988753
No 325
>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function.
Probab=90.88 E-value=1.1 Score=39.08 Aligned_cols=110 Identities=15% Similarity=0.118 Sum_probs=65.4
Q ss_pred CCeEEEEcCCCChHHHHHHhhc---------------------CCeEEEEcCCH--HHHHHHHHHHHhc-----------
Q 042544 101 GQKVLDVGCGIGGPLREIAQFS---------------------STSVTGLNNNE--YQITRGKELNRFA----------- 146 (305)
Q Consensus 101 ~~~vLDiGcG~G~~~~~l~~~~---------------------~~~v~gvD~s~--~~l~~a~~~~~~~----------- 146 (305)
..+||-||.|-|.-...++... ...|+.||+.+ ..+......+...
T Consensus 87 ~~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~itlvDiAdWs~VV~~L~~~i~s~p~~sk~a~~~~ 166 (315)
T PF11312_consen 87 SLRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLSITLVDIADWSSVVDRLTTTITSPPPLSKYASAAN 166 (315)
T ss_pred CceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcceEEEEEecChHHHHHHHHHhccCCCCccccccccc
Confidence 3699999999988666665321 13899999975 4444444433322
Q ss_pred -CC----CCCeEEEEcCCCCCCCCC-------CCeeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEE
Q 042544 147 -GV----DKTCNFVKADFMKMPFPD-------NSFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVI 214 (305)
Q Consensus 147 -~~----~~~~~~~~~d~~~~~~~~-------~~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i 214 (305)
.. .-++.|.+.|+..+..++ ...++|...+.+..+-....-+ ..+++..+...++||-.++|
T Consensus 167 ~~~~~~~~~~~~F~~~DvL~~~~~~l~~ll~~~~~~LITLlFTlNELfs~s~~k------Tt~FLl~Lt~~~~~GslLLV 240 (315)
T PF11312_consen 167 WPLIEPDRFNVSFTQQDVLSLSEDDLKSLLGPPSPDLITLLFTLNELFSTSISK------TTKFLLRLTDICPPGSLLLV 240 (315)
T ss_pred cccCCccceeeeEEecccccCChHHHHHHhccchhHHHHHHHHHHHHHhcChHH------HHHHHHHHHhhcCCCcEEEE
Confidence 00 114678888887654321 2346665555443221110000 12368899999999999999
Q ss_pred Ee
Q 042544 215 WE 216 (305)
Q Consensus 215 ~~ 216 (305)
.+
T Consensus 241 vD 242 (315)
T PF11312_consen 241 VD 242 (315)
T ss_pred Ec
Confidence 87
No 326
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=90.82 E-value=0.56 Score=35.08 Aligned_cols=83 Identities=17% Similarity=0.201 Sum_probs=56.2
Q ss_pred CCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCC-----C-CCCCCeeEEEecccccccCC
Q 042544 110 GIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKM-----P-FPDNSFDAVYAIEATCHAPD 183 (305)
Q Consensus 110 G~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~-----~-~~~~~fD~v~~~~~l~~~~~ 183 (305)
|.|..+..+++..+++|+++|.++.-++.+++. |. -.++..+-.++ . .+...+|+|+-+- ..
T Consensus 1 ~vG~~a~q~ak~~G~~vi~~~~~~~k~~~~~~~----Ga---~~~~~~~~~~~~~~i~~~~~~~~~d~vid~~-----g~ 68 (130)
T PF00107_consen 1 GVGLMAIQLAKAMGAKVIATDRSEEKLELAKEL----GA---DHVIDYSDDDFVEQIRELTGGRGVDVVIDCV-----GS 68 (130)
T ss_dssp HHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHT----TE---SEEEETTTSSHHHHHHHHTTTSSEEEEEESS-----SS
T ss_pred ChHHHHHHHHHHcCCEEEEEECCHHHHHHHHhh----cc---cccccccccccccccccccccccceEEEEec-----Cc
Confidence 457888899976689999999999998888763 31 12222222211 1 2334799987542 21
Q ss_pred hhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 184 AAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 184 ~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
.. .++....+|+++|.+++..
T Consensus 69 ~~------------~~~~~~~~l~~~G~~v~vg 89 (130)
T PF00107_consen 69 GD------------TLQEAIKLLRPGGRIVVVG 89 (130)
T ss_dssp HH------------HHHHHHHHEEEEEEEEEES
T ss_pred HH------------HHHHHHHHhccCCEEEEEE
Confidence 22 5889999999999998865
No 327
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=90.70 E-value=1.7 Score=38.74 Aligned_cols=46 Identities=26% Similarity=0.396 Sum_probs=36.6
Q ss_pred cCCCCCCeEEEEcCCC-ChHHHHHHhhcCCeEEEEcCCHHHHHHHHH
Q 042544 96 LGLKSGQKVLDVGCGI-GGPLREIAQFSSTSVTGLNNNEYQITRGKE 141 (305)
Q Consensus 96 ~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~ 141 (305)
..+.++.+||=+|||. |..+..+++..+.+|+++|.++..++.+++
T Consensus 162 ~~~~~g~~VlV~G~G~vG~~a~~~a~~~G~~vi~~~~~~~~~~~~~~ 208 (349)
T TIGR03201 162 AGLKKGDLVIVIGAGGVGGYMVQTAKAMGAAVVAIDIDPEKLEMMKG 208 (349)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHH
Confidence 5677899999999964 566666776567899999999998887755
No 328
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=90.20 E-value=1 Score=39.50 Aligned_cols=97 Identities=16% Similarity=0.241 Sum_probs=62.1
Q ss_pred HHcCCCCCCeEEEEcC--CCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCC-----CCCC
Q 042544 94 LQLGLKSGQKVLDVGC--GIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKM-----PFPD 166 (305)
Q Consensus 94 ~~~~~~~~~~vLDiGc--G~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~-----~~~~ 166 (305)
....+.++.+||=.|+ |.|..+..+++..+.+|++++.++...+.+++ .|.. .++...-.++ ....
T Consensus 137 ~~~~~~~g~~vlI~ga~g~vG~~aiqlA~~~G~~vi~~~~s~~~~~~l~~----~Ga~---~vi~~~~~~~~~~v~~~~~ 209 (329)
T cd08294 137 EICKPKAGETVVVNGAAGAVGSLVGQIAKIKGCKVIGCAGSDDKVAWLKE----LGFD---AVFNYKTVSLEEALKEAAP 209 (329)
T ss_pred HhcCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH----cCCC---EEEeCCCccHHHHHHHHCC
Confidence 3456778899998874 56667777886668899999999988777655 2332 1221111110 0112
Q ss_pred CCeeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEE
Q 042544 167 NSFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIW 215 (305)
Q Consensus 167 ~~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~ 215 (305)
..+|+|+-.-. .. .+....+.|+++|.++..
T Consensus 210 ~gvd~vld~~g-----~~-------------~~~~~~~~l~~~G~iv~~ 240 (329)
T cd08294 210 DGIDCYFDNVG-----GE-------------FSSTVLSHMNDFGRVAVC 240 (329)
T ss_pred CCcEEEEECCC-----HH-------------HHHHHHHhhccCCEEEEE
Confidence 45888874311 11 478889999999998764
No 329
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=90.19 E-value=1.3 Score=39.18 Aligned_cols=101 Identities=24% Similarity=0.304 Sum_probs=59.2
Q ss_pred HcCCCCCCeEEEEcCC-CChHHHHHHhhcCCe-EEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCC-C-CCCCCee
Q 042544 95 QLGLKSGQKVLDVGCG-IGGPLREIAQFSSTS-VTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKM-P-FPDNSFD 170 (305)
Q Consensus 95 ~~~~~~~~~vLDiGcG-~G~~~~~l~~~~~~~-v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~-~-~~~~~fD 170 (305)
.+.+.++.+||=+|+| .|..+..+++..+++ |++++.++..++.+++. |...-+.....+...+ . .....+|
T Consensus 158 ~~~~~~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~~----ga~~~i~~~~~~~~~~~~~~~~~~~d 233 (339)
T cd08239 158 RVGVSGRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAKAL----GADFVINSGQDDVQEIRELTSGAGAD 233 (339)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh----CCCEEEcCCcchHHHHHHHhCCCCCC
Confidence 4566788999999875 334555566556777 99999999888777542 3211011111110000 0 1123588
Q ss_pred EEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 171 AVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 171 ~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
+|+-.-. ... .+....+.|+++|.+++..
T Consensus 234 ~vid~~g-----~~~------------~~~~~~~~l~~~G~~v~~g 262 (339)
T cd08239 234 VAIECSG-----NTA------------ARRLALEAVRPWGRLVLVG 262 (339)
T ss_pred EEEECCC-----CHH------------HHHHHHHHhhcCCEEEEEc
Confidence 8874311 111 3567789999999988754
No 330
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=89.92 E-value=2.2 Score=37.56 Aligned_cols=97 Identities=18% Similarity=0.243 Sum_probs=60.6
Q ss_pred cCCCCCCeEEEEcCC-CChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCC-CCCCCeeEEE
Q 042544 96 LGLKSGQKVLDVGCG-IGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMP-FPDNSFDAVY 173 (305)
Q Consensus 96 ~~~~~~~~vLDiGcG-~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~fD~v~ 173 (305)
..+.++.+||-.||| .|..+..+++..+.+|++++.++...+.+++. +.. .++...-.... -..+.+|+++
T Consensus 158 ~~~~~~~~vlI~g~g~iG~~~~~~a~~~G~~v~~~~~~~~~~~~~~~~----g~~---~~~~~~~~~~~~~~~~~~d~vi 230 (330)
T cd08245 158 AGPRPGERVAVLGIGGLGHLAVQYARAMGFETVAITRSPDKRELARKL----GAD---EVVDSGAELDEQAAAGGADVIL 230 (330)
T ss_pred hCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHh----CCc---EEeccCCcchHHhccCCCCEEE
Confidence 567788899999987 66666667766688999999999888776432 221 11111110000 0123588887
Q ss_pred ecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 174 AIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 174 ~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
.... ... .+..+.+.|+++|.++...
T Consensus 231 ~~~~-----~~~------------~~~~~~~~l~~~G~~i~~~ 256 (330)
T cd08245 231 VTVV-----SGA------------AAEAALGGLRRGGRIVLVG 256 (330)
T ss_pred ECCC-----cHH------------HHHHHHHhcccCCEEEEEC
Confidence 5321 111 3777889999999887654
No 331
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=89.90 E-value=1.2 Score=34.65 Aligned_cols=54 Identities=19% Similarity=0.145 Sum_probs=31.9
Q ss_pred EEcCCCC--hHHHHHH---hhcCCeEEEEcCCHHHHHHHHHH--HHhcCCCCCeEEEEcCC
Q 042544 106 DVGCGIG--GPLREIA---QFSSTSVTGLNNNEYQITRGKEL--NRFAGVDKTCNFVKADF 159 (305)
Q Consensus 106 DiGcG~G--~~~~~l~---~~~~~~v~gvD~s~~~l~~a~~~--~~~~~~~~~~~~~~~d~ 159 (305)
|||+..| ..+..+. ..+..+|+++|++|..++..+++ +........+++.....
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~~~~~l~~~~~~~~~~~~~~ 61 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRNLNLALNDKDGEVEFHPYAV 61 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH--HHHTTTSTTGGEEEE-S
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHHHHHHhcCCCceEEEEEeec
Confidence 8999999 5555443 22578999999999999988888 44433323466665544
No 332
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=89.54 E-value=1.8 Score=38.56 Aligned_cols=94 Identities=11% Similarity=0.112 Sum_probs=56.3
Q ss_pred CCCCCCeEEEEcCC-CChHHHHHHhh-c-CCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEE
Q 042544 97 GLKSGQKVLDVGCG-IGGPLREIAQF-S-STSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVY 173 (305)
Q Consensus 97 ~~~~~~~vLDiGcG-~G~~~~~l~~~-~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~ 173 (305)
.+.++.+||=+||| .|..+..+++. . +.+|+++|.++.-++.+++ .+. . ....+ +. .+..+|+|+
T Consensus 160 ~~~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~----~~~---~-~~~~~---~~-~~~g~d~vi 227 (341)
T cd08237 160 AHKDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF----ADE---T-YLIDD---IP-EDLAVDHAF 227 (341)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh----cCc---e-eehhh---hh-hccCCcEEE
Confidence 45678999999986 33344555543 2 4689999999988887754 111 1 11111 11 112478887
Q ss_pred ecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 174 AIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 174 ~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
-.-. .-..+ ..+....++|+++|.+++.-
T Consensus 228 D~~G--~~~~~------------~~~~~~~~~l~~~G~iv~~G 256 (341)
T cd08237 228 ECVG--GRGSQ------------SAINQIIDYIRPQGTIGLMG 256 (341)
T ss_pred ECCC--CCccH------------HHHHHHHHhCcCCcEEEEEe
Confidence 3211 00011 14788899999999988754
No 333
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=89.52 E-value=4.3 Score=35.65 Aligned_cols=99 Identities=25% Similarity=0.342 Sum_probs=61.1
Q ss_pred HHcCCCCCCeEEEEcCC-CChHHHHHHhhcCCe-EEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCC----CCCCC
Q 042544 94 LQLGLKSGQKVLDVGCG-IGGPLREIAQFSSTS-VTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKM----PFPDN 167 (305)
Q Consensus 94 ~~~~~~~~~~vLDiGcG-~G~~~~~l~~~~~~~-v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~----~~~~~ 167 (305)
....+.++.+||-+|+| .|..+..+++..+.+ +++++.++...+.+++. +.. .++..+-... .....
T Consensus 153 ~~~~~~~g~~vlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~----g~~---~~~~~~~~~~~~~~~~~~~ 225 (334)
T cd08234 153 DLLGIKPGDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNEEKLELAKKL----GAT---ETVDPSREDPEAQKEDNPY 225 (334)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHh----CCe---EEecCCCCCHHHHHHhcCC
Confidence 34567788999999865 355666666555766 89999998887776442 221 2222111110 11235
Q ss_pred CeeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 168 SFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 168 ~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
.+|+++.... .. . .+.++.+.|+++|.++...
T Consensus 226 ~vd~v~~~~~-----~~-~-----------~~~~~~~~l~~~G~~v~~g 257 (334)
T cd08234 226 GFDVVIEATG-----VP-K-----------TLEQAIEYARRGGTVLVFG 257 (334)
T ss_pred CCcEEEECCC-----Ch-H-----------HHHHHHHHHhcCCEEEEEe
Confidence 6898875321 11 1 4778899999999887643
No 334
>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins. TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.
Probab=89.45 E-value=0.59 Score=39.59 Aligned_cols=103 Identities=15% Similarity=0.194 Sum_probs=55.5
Q ss_pred CCeEEEEcCCCChHHHHHHhh------cCCeEEEEcCC--------------------------HHHHHHHHHHHHhcCC
Q 042544 101 GQKVLDVGCGIGGPLREIAQF------SSTSVTGLNNN--------------------------EYQITRGKELNRFAGV 148 (305)
Q Consensus 101 ~~~vLDiGcG~G~~~~~l~~~------~~~~v~gvD~s--------------------------~~~l~~a~~~~~~~~~ 148 (305)
..-|+|+||=.|..+..++.. .+-+++++|-= ...++..++++...++
T Consensus 75 pGdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~~~~~~s~e~V~~n~~~~gl 154 (248)
T PF05711_consen 75 PGDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYNGYLAVSLEEVRENFARYGL 154 (248)
T ss_dssp -SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCCHHCTHHHHHHHHCCCCTTT
T ss_pred CeEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhcccccccCHHHHHHHHHHcCC
Confidence 358999999999877665421 24578888741 1234455555555553
Q ss_pred -CCCeEEEEcCCCC-CC-CCCCCeeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 149 -DKTCNFVKADFMK-MP-FPDNSFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 149 -~~~~~~~~~d~~~-~~-~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
.+++.++.+.+.+ +| .+.+.+-++..- ..+-++.. ..|+.++..|.|||++++.+
T Consensus 155 ~~~~v~~vkG~F~dTLp~~p~~~IAll~lD---~DlYesT~----------~aLe~lyprl~~GGiIi~DD 212 (248)
T PF05711_consen 155 LDDNVRFVKGWFPDTLPDAPIERIALLHLD---CDLYESTK----------DALEFLYPRLSPGGIIIFDD 212 (248)
T ss_dssp SSTTEEEEES-HHHHCCC-TT--EEEEEE------SHHHHH----------HHHHHHGGGEEEEEEEEESS
T ss_pred CcccEEEECCcchhhhccCCCccEEEEEEe---ccchHHHH----------HHHHHHHhhcCCCeEEEEeC
Confidence 4579999999865 44 223333222211 01111111 25888888899999998854
No 335
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=89.43 E-value=1.6 Score=38.67 Aligned_cols=96 Identities=11% Similarity=0.175 Sum_probs=59.6
Q ss_pred cCCCCC--CeEEEEcC--CCChHHHHHHhhcCC-eEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCC-----CCC
Q 042544 96 LGLKSG--QKVLDVGC--GIGGPLREIAQFSST-SVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKM-----PFP 165 (305)
Q Consensus 96 ~~~~~~--~~vLDiGc--G~G~~~~~l~~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~-----~~~ 165 (305)
..+.++ .+||=.|+ |.|..+..+++..++ +|++++.++...+.+++. .|.. .++..+-.++ ...
T Consensus 148 ~~~~~g~~~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~~~~~~~---lGa~---~vi~~~~~~~~~~i~~~~ 221 (345)
T cd08293 148 GHITPGANQTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKCQLLKSE---LGFD---AAINYKTDNVAERLRELC 221 (345)
T ss_pred ccCCCCCCCEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHh---cCCc---EEEECCCCCHHHHHHHHC
Confidence 345555 79998886 577788888866687 899999998877766552 2332 1221111111 011
Q ss_pred CCCeeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEE
Q 042544 166 DNSFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIW 215 (305)
Q Consensus 166 ~~~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~ 215 (305)
...+|+|+..-. .. .+.+..+.|+++|.++..
T Consensus 222 ~~gvd~vid~~g-----~~-------------~~~~~~~~l~~~G~iv~~ 253 (345)
T cd08293 222 PEGVDVYFDNVG-----GE-------------ISDTVISQMNENSHIILC 253 (345)
T ss_pred CCCceEEEECCC-----cH-------------HHHHHHHHhccCCEEEEE
Confidence 245888874311 11 367788999999998864
No 336
>PLN02740 Alcohol dehydrogenase-like
Probab=89.07 E-value=1.5 Score=39.66 Aligned_cols=98 Identities=18% Similarity=0.385 Sum_probs=59.6
Q ss_pred HcCCCCCCeEEEEcCC-CChHHHHHHhhcCC-eEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcC-----CCC-C-CCC
Q 042544 95 QLGLKSGQKVLDVGCG-IGGPLREIAQFSST-SVTGLNNNEYQITRGKELNRFAGVDKTCNFVKAD-----FMK-M-PFP 165 (305)
Q Consensus 95 ~~~~~~~~~vLDiGcG-~G~~~~~l~~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d-----~~~-~-~~~ 165 (305)
...+.++.+||=+||| .|..+..+++..++ +|+++|.++..++.+++ .|.. .++... ..+ + ...
T Consensus 193 ~~~~~~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~----~Ga~---~~i~~~~~~~~~~~~v~~~~ 265 (381)
T PLN02740 193 TANVQAGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKE----MGIT---DFINPKDSDKPVHERIREMT 265 (381)
T ss_pred ccCCCCCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHH----cCCc---EEEecccccchHHHHHHHHh
Confidence 4567889999999876 34455556655577 69999999998888755 2322 122111 110 0 011
Q ss_pred CCCeeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhC-CceEEEe
Q 042544 166 DNSFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQA-GFEVIWE 216 (305)
Q Consensus 166 ~~~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~g-G~~~i~~ 216 (305)
.+.+|+|+-.-. ... .+......++++ |.+++.-
T Consensus 266 ~~g~dvvid~~G-----~~~------------~~~~a~~~~~~g~G~~v~~G 300 (381)
T PLN02740 266 GGGVDYSFECAG-----NVE------------VLREAFLSTHDGWGLTVLLG 300 (381)
T ss_pred CCCCCEEEECCC-----ChH------------HHHHHHHhhhcCCCEEEEEc
Confidence 225888874321 111 477788889997 8877653
No 337
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=89.02 E-value=1.7 Score=38.49 Aligned_cols=100 Identities=25% Similarity=0.350 Sum_probs=63.7
Q ss_pred HcCCCCCCeEEEEcC--CCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCC-C-C-CCCCCe
Q 042544 95 QLGLKSGQKVLDVGC--GIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMK-M-P-FPDNSF 169 (305)
Q Consensus 95 ~~~~~~~~~vLDiGc--G~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~-~-~-~~~~~f 169 (305)
...++++.+||=.|+ |-|.++..|++..+..++++--+++-.+.+++ .|.+.-+.+...|+.+ . . .....+
T Consensus 137 ~~~l~~g~~VLV~gaaGgVG~~aiQlAk~~G~~~v~~~~s~~k~~~~~~----lGAd~vi~y~~~~~~~~v~~~t~g~gv 212 (326)
T COG0604 137 RAGLKPGETVLVHGAAGGVGSAAIQLAKALGATVVAVVSSSEKLELLKE----LGADHVINYREEDFVEQVRELTGGKGV 212 (326)
T ss_pred hcCCCCCCEEEEecCCchHHHHHHHHHHHcCCcEEEEecCHHHHHHHHh----cCCCEEEcCCcccHHHHHHHHcCCCCc
Confidence 356778999999885 45668888887667688888888866665444 3433223333333322 1 1 122368
Q ss_pred eEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 170 DAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 170 D~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
|+|+..-. .. .+.+....|+++|.++..-
T Consensus 213 Dvv~D~vG-----~~-------------~~~~~l~~l~~~G~lv~ig 241 (326)
T COG0604 213 DVVLDTVG-----GD-------------TFAASLAALAPGGRLVSIG 241 (326)
T ss_pred eEEEECCC-----HH-------------HHHHHHHHhccCCEEEEEe
Confidence 99974321 11 5778899999999988754
No 338
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=88.86 E-value=4.6 Score=34.45 Aligned_cols=96 Identities=18% Similarity=0.263 Sum_probs=59.2
Q ss_pred HcCCCCCCeEEEEcCCC-ChHHHHHHhhcCCe-EEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEE
Q 042544 95 QLGLKSGQKVLDVGCGI-GGPLREIAQFSSTS-VTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAV 172 (305)
Q Consensus 95 ~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~-v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v 172 (305)
...+.++.+||=.|||. |..+..+++..+.+ |++++.++...+.+++. |....+ .... .. ......+|+|
T Consensus 92 ~~~~~~g~~vlI~g~g~vg~~~i~~a~~~g~~~vi~~~~~~~~~~~~~~~----g~~~~~--~~~~-~~-~~~~~~~d~v 163 (277)
T cd08255 92 DAEPRLGERVAVVGLGLVGLLAAQLAKAAGAREVVGVDPDAARRELAEAL----GPADPV--AADT-AD-EIGGRGADVV 163 (277)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEECCCHHHHHHHHHc----CCCccc--cccc-hh-hhcCCCCCEE
Confidence 45667888999888764 55666677555777 99999999888766653 211111 1100 00 0123458888
Q ss_pred EecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEE
Q 042544 173 YAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIW 215 (305)
Q Consensus 173 ~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~ 215 (305)
+..-.. .. .+....+.|+++|.++..
T Consensus 164 l~~~~~-----~~------------~~~~~~~~l~~~g~~~~~ 189 (277)
T cd08255 164 IEASGS-----PS------------ALETALRLLRDRGRVVLV 189 (277)
T ss_pred EEccCC-----hH------------HHHHHHHHhcCCcEEEEE
Confidence 743110 11 367788999999988764
No 339
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=88.73 E-value=1.8 Score=37.88 Aligned_cols=86 Identities=20% Similarity=0.213 Sum_probs=53.5
Q ss_pred CCCeEEEEcCC-CChHHHHHHhhcCCe-EEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEEeccc
Q 042544 100 SGQKVLDVGCG-IGGPLREIAQFSSTS-VTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIEA 177 (305)
Q Consensus 100 ~~~~vLDiGcG-~G~~~~~l~~~~~~~-v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~ 177 (305)
++.+||=+||| .|.++..+++..+++ |+++|.++..++.+.+. . ++ |..+. ....+|+|+-.-.
T Consensus 144 ~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~----~------~i--~~~~~--~~~g~Dvvid~~G 209 (308)
T TIGR01202 144 KVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGY----E------VL--DPEKD--PRRDYRAIYDASG 209 (308)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhc----c------cc--Chhhc--cCCCCCEEEECCC
Confidence 56788888876 455667777655765 66789888777655431 1 11 11110 1245888874321
Q ss_pred ccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 178 TCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 178 l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
... .+..+.+.|+++|.+++.-
T Consensus 210 -----~~~------------~~~~~~~~l~~~G~iv~~G 231 (308)
T TIGR01202 210 -----DPS------------LIDTLVRRLAKGGEIVLAG 231 (308)
T ss_pred -----CHH------------HHHHHHHhhhcCcEEEEEe
Confidence 111 4788899999999988754
No 340
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=88.65 E-value=2.1 Score=37.98 Aligned_cols=100 Identities=16% Similarity=0.212 Sum_probs=62.6
Q ss_pred HcCCCCCCeEEEEcC--CCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEc-CCCC-C-CCCCCCe
Q 042544 95 QLGLKSGQKVLDVGC--GIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKA-DFMK-M-PFPDNSF 169 (305)
Q Consensus 95 ~~~~~~~~~vLDiGc--G~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~-d~~~-~-~~~~~~f 169 (305)
...+.++.+||=.|+ |.|..+..+++..+.+|++++.++...+.+++. .|...-+..... +..+ + ....+.+
T Consensus 146 ~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~G~~Vi~~~~~~~~~~~~~~~---lGa~~vi~~~~~~~~~~~i~~~~~~gv 222 (338)
T cd08295 146 VCKPKKGETVFVSAASGAVGQLVGQLAKLKGCYVVGSAGSDEKVDLLKNK---LGFDDAFNYKEEPDLDAALKRYFPNGI 222 (338)
T ss_pred hcCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHh---cCCceeEEcCCcccHHHHHHHhCCCCc
Confidence 456788999998886 466777778876689999999988887776552 232211111111 1111 0 0112468
Q ss_pred eEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEE
Q 042544 170 DAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIW 215 (305)
Q Consensus 170 D~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~ 215 (305)
|+|+-.- .. . .+....+.|+++|.++..
T Consensus 223 d~v~d~~-----g~--~-----------~~~~~~~~l~~~G~iv~~ 250 (338)
T cd08295 223 DIYFDNV-----GG--K-----------MLDAVLLNMNLHGRIAAC 250 (338)
T ss_pred EEEEECC-----CH--H-----------HHHHHHHHhccCcEEEEe
Confidence 8887431 11 1 477889999999998864
No 341
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=88.63 E-value=2 Score=36.69 Aligned_cols=65 Identities=15% Similarity=0.198 Sum_probs=42.0
Q ss_pred CCCCCeEEEEcCCCChHHHHHHhh------cCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCC
Q 042544 98 LKSGQKVLDVGCGIGGPLREIAQF------SSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMP 163 (305)
Q Consensus 98 ~~~~~~vLDiGcG~G~~~~~l~~~------~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~ 163 (305)
+.+...++|+|||.|.++..++.. ....++.||-...-. .+..++........++=+..|+.++.
T Consensus 16 l~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~~R~-K~D~~~~~~~~~~~~~R~riDI~dl~ 86 (259)
T PF05206_consen 16 LNPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRASNRH-KADNKIRKDESEPKFERLRIDIKDLD 86 (259)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCcccc-cchhhhhccCCCCceEEEEEEeeccc
Confidence 456779999999999999999853 246899999865333 23333333221124555666666643
No 342
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=88.24 E-value=4 Score=35.14 Aligned_cols=99 Identities=20% Similarity=0.235 Sum_probs=57.6
Q ss_pred cCCCCCCeEEEEcCC-CChHHHHHHhhcCCe-EEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEc--CCCCCCCCCCCeeE
Q 042544 96 LGLKSGQKVLDVGCG-IGGPLREIAQFSSTS-VTGLNNNEYQITRGKELNRFAGVDKTCNFVKA--DFMKMPFPDNSFDA 171 (305)
Q Consensus 96 ~~~~~~~~vLDiGcG-~G~~~~~l~~~~~~~-v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~--d~~~~~~~~~~fD~ 171 (305)
....++.+||=+|+| .|..+..+++..+.+ |+++|.++..++.+++. |...-+..... .+... .....+|+
T Consensus 116 ~~~~~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~~----Ga~~~i~~~~~~~~~~~~-~~~~g~d~ 190 (280)
T TIGR03366 116 AGDLKGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALSF----GATALAEPEVLAERQGGL-QNGRGVDV 190 (280)
T ss_pred ccCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHc----CCcEecCchhhHHHHHHH-hCCCCCCE
Confidence 344578899999875 344555566555765 99999999888777653 32110110000 00001 11234788
Q ss_pred EEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 172 VYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 172 v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
|+-.- .... .+..+.+.|+++|.+++.-
T Consensus 191 vid~~-----G~~~------------~~~~~~~~l~~~G~iv~~G 218 (280)
T TIGR03366 191 ALEFS-----GATA------------AVRACLESLDVGGTAVLAG 218 (280)
T ss_pred EEECC-----CChH------------HHHHHHHHhcCCCEEEEec
Confidence 76421 1111 4778899999999988754
No 343
>PTZ00357 methyltransferase; Provisional
Probab=88.16 E-value=3 Score=40.40 Aligned_cols=100 Identities=14% Similarity=0.087 Sum_probs=62.9
Q ss_pred eEEEEcCCCChHHHHHHh---h--cCCeEEEEcCCHHHHHHHHHHH-HhcCC-------CCCeEEEEcCCCCCCCCC---
Q 042544 103 KVLDVGCGIGGPLREIAQ---F--SSTSVTGLNNNEYQITRGKELN-RFAGV-------DKTCNFVKADFMKMPFPD--- 166 (305)
Q Consensus 103 ~vLDiGcG~G~~~~~l~~---~--~~~~v~gvD~s~~~l~~a~~~~-~~~~~-------~~~~~~~~~d~~~~~~~~--- 166 (305)
.|+=+|+|-|-+.....+ . ...+|++|+-++......+.+. ....+ ...|+++..|+..+..+.
T Consensus 703 VImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~~ 782 (1072)
T PTZ00357 703 HLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAENG 782 (1072)
T ss_pred EEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCcccccccccccc
Confidence 589999999976655432 1 2368999999966443433332 11122 346999999999874331
Q ss_pred --------CCeeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHh----CCc
Q 042544 167 --------NSFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQ----AGF 211 (305)
Q Consensus 167 --------~~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~----gG~ 211 (305)
+.+|+|++ ..|..+.|.+.- ...|..+.+.||+ +|+
T Consensus 783 s~~~P~~~gKaDIVVS-ELLGSFGDNELS--------PECLDGaQrfLKdiqhsdGI 830 (1072)
T PTZ00357 783 SLTLPADFGLCDLIVS-ELLGSLGDNELS--------PECLEAFHAQLEDIQLSRGI 830 (1072)
T ss_pred cccccccccccceehH-hhhcccccccCC--------HHHHHHHHHhhhhhcccccc
Confidence 36898886 334444443321 1258888888887 775
No 344
>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]
Probab=88.07 E-value=1.7 Score=37.35 Aligned_cols=49 Identities=14% Similarity=0.162 Sum_probs=40.1
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhc
Q 042544 97 GLKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFA 146 (305)
Q Consensus 97 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~ 146 (305)
.+..+-+|.-||+|.......+++. .++|.+||+++..++..+-+++..
T Consensus 60 ~~g~ghrivtigSGGcn~L~ylsr~-Pa~id~VDlN~ahiAln~lklaA~ 108 (414)
T COG5379 60 QLGIGHRIVTIGSGGCNMLAYLSRA-PARIDVVDLNPAHIALNRLKLAAF 108 (414)
T ss_pred hcCCCcEEEEecCCcchHHHHhhcC-CceeEEEeCCHHHHHHHHHHHHHH
Confidence 4567889999999977777777776 589999999999998877766543
No 345
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=87.99 E-value=2.8 Score=37.02 Aligned_cols=101 Identities=24% Similarity=0.327 Sum_probs=62.2
Q ss_pred HHcCCCCCCeEEEEcCCC-ChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCC-C--CCCCCCe
Q 042544 94 LQLGLKSGQKVLDVGCGI-GGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMK-M--PFPDNSF 169 (305)
Q Consensus 94 ~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~-~--~~~~~~f 169 (305)
....+.++.+||-.|+|. |..+..+++..+.+|+++..++...+.+++. +...-+.....++.. + ..+...+
T Consensus 153 ~~~~l~~g~~vLI~g~g~vG~~a~~lA~~~g~~v~~~~~s~~~~~~~~~~----g~~~v~~~~~~~~~~~l~~~~~~~~v 228 (337)
T cd08261 153 RRAGVTAGDTVLVVGAGPIGLGVIQVAKARGARVIVVDIDDERLEFAREL----GADDTINVGDEDVAARLRELTDGEGA 228 (337)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEECCCHHHHHHHHHh----CCCEEecCcccCHHHHHHHHhCCCCC
Confidence 345677889999998763 6677777766689999998888887766442 221101111111100 0 0123458
Q ss_pred eEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEE
Q 042544 170 DAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIW 215 (305)
Q Consensus 170 D~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~ 215 (305)
|+++.... ... .+.++.+.|+++|.++..
T Consensus 229 d~vld~~g-----~~~------------~~~~~~~~l~~~G~~i~~ 257 (337)
T cd08261 229 DVVIDATG-----NPA------------SMEEAVELVAHGGRVVLV 257 (337)
T ss_pred CEEEECCC-----CHH------------HHHHHHHHHhcCCEEEEE
Confidence 88875421 111 477889999999987754
No 346
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=87.97 E-value=0.77 Score=40.43 Aligned_cols=65 Identities=20% Similarity=0.186 Sum_probs=48.5
Q ss_pred eEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCC---CCCCCeeEEEecc
Q 042544 103 KVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMP---FPDNSFDAVYAIE 176 (305)
Q Consensus 103 ~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~---~~~~~fD~v~~~~ 176 (305)
+++|+-||.|.+..-+.+..-..+.++|+++...+.-+.+.. ....+|+..+. ++. .+|+++...
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag~~~~~a~e~~~~a~~~y~~N~~--------~~~~~Di~~~~~~~l~~-~~D~l~ggp 69 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAGFEVVWAVEIDPDACETYKANFP--------EVICGDITEIDPSDLPK-DVDLLIGGP 69 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTTEEEEEEEESSHHHHHHHHHHHT--------EEEESHGGGCHHHHHHH-T-SEEEEE-
T ss_pred cEEEEccCccHHHHHHHhcCcEEEEEeecCHHHHHhhhhccc--------ccccccccccccccccc-cceEEEecc
Confidence 799999999999999886522478899999998887777642 67888888764 443 489998744
No 347
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=87.49 E-value=0.66 Score=42.68 Aligned_cols=109 Identities=18% Similarity=0.134 Sum_probs=70.4
Q ss_pred CCCeEEEEcCCCChHHHHHH-hhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCC-------CCCCCCeeE
Q 042544 100 SGQKVLDVGCGIGGPLREIA-QFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKM-------PFPDNSFDA 171 (305)
Q Consensus 100 ~~~~vLDiGcG~G~~~~~l~-~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~-------~~~~~~fD~ 171 (305)
.+..+|-+|-|.|.+...+. ..+...++++++.|.|++.|++......-. +..+...|..+. .-.+..||+
T Consensus 295 ~~~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l~va~q~f~f~q~~-r~~V~i~dGl~~~~~~~k~~~~~~~~dv 373 (482)
T KOG2352|consen 295 TGGKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEMLEVATQYFGFMQSD-RNKVHIADGLDFLQRTAKSQQEDICPDV 373 (482)
T ss_pred ccCcEEEEecCCCccccceeeecCccceeEEEEChhHhhccHhhhchhhhh-hhhhhHhhchHHHHHHhhccccccCCcE
Confidence 45678889999999998887 556799999999999999998876433211 233444443321 124567998
Q ss_pred EEeccc---cccc--CChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 172 VYAIEA---TCHA--PDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 172 v~~~~~---l~~~--~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
+..--- .+-+ |.+..++ -.++..++..|.|-|.++|.-
T Consensus 374 l~~dvds~d~~g~~~pp~~fva-------~~~l~~~k~~l~p~g~f~inl 416 (482)
T KOG2352|consen 374 LMVDVDSKDSHGMQCPPPAFVA-------QVALQPVKMILPPRGMFIINL 416 (482)
T ss_pred EEEECCCCCcccCcCCchHHHH-------HHHHHHHhhccCccceEEEEE
Confidence 875210 1111 1222211 125788889999999998754
No 348
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=87.33 E-value=2 Score=37.41 Aligned_cols=97 Identities=20% Similarity=0.105 Sum_probs=65.7
Q ss_pred CeEEEEcCC-CChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEEecccccc
Q 042544 102 QKVLDVGCG-IGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIEATCH 180 (305)
Q Consensus 102 ~~vLDiGcG-~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~ 180 (305)
.+|.=||.| -|..+..++--.++.|+-+|+|..-+.+..... ..+++..-.+...+.-.-...|+|+..-.+.-
T Consensus 169 ~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f-----~~rv~~~~st~~~iee~v~~aDlvIgaVLIpg 243 (371)
T COG0686 169 AKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLF-----GGRVHTLYSTPSNIEEAVKKADLVIGAVLIPG 243 (371)
T ss_pred ccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHhh-----CceeEEEEcCHHHHHHHhhhccEEEEEEEecC
Confidence 466668888 567777777556899999999998887665543 23466665555443222245788886554444
Q ss_pred cCChhhhhhcCCCCCcccHHHHHHHHHhCCceEE
Q 042544 181 APDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVI 214 (305)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i 214 (305)
-..|.. ..+++.+.||||++++=
T Consensus 244 akaPkL-----------vt~e~vk~MkpGsVivD 266 (371)
T COG0686 244 AKAPKL-----------VTREMVKQMKPGSVIVD 266 (371)
T ss_pred CCCcee-----------hhHHHHHhcCCCcEEEE
Confidence 444444 58899999999997653
No 349
>KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=87.14 E-value=1.6 Score=35.99 Aligned_cols=69 Identities=17% Similarity=0.197 Sum_probs=47.3
Q ss_pred HHHHHcCCCCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCC
Q 042544 91 FLALQLGLKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMK 161 (305)
Q Consensus 91 ~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~ 161 (305)
.+...++.-...-|.+||.|.|..++.+.+....++..+++++..+.-.+-..++. +.+..+.++|+..
T Consensus 41 KIvK~A~~~~~~~v~eIgPgpggitR~il~a~~~RL~vVE~D~RFip~LQ~L~EAa--~~~~~IHh~D~LR 109 (326)
T KOG0821|consen 41 KIVKKAGNLTNAYVYEIGPGPGGITRSILNADVARLLVVEKDTRFIPGLQMLSEAA--PGKLRIHHGDVLR 109 (326)
T ss_pred HHHHhccccccceeEEecCCCCchhHHHHhcchhheeeeeeccccChHHHHHhhcC--CcceEEeccccce
Confidence 33334444456789999999999999998653467778888776666555544433 3357777777764
No 350
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=87.03 E-value=8.2 Score=34.17 Aligned_cols=101 Identities=21% Similarity=0.265 Sum_probs=61.0
Q ss_pred HHcCCCCCCeEEEEcCCC-ChHHHHHHhhcCCe-EEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCC-------CCCCC
Q 042544 94 LQLGLKSGQKVLDVGCGI-GGPLREIAQFSSTS-VTGLNNNEYQITRGKELNRFAGVDKTCNFVKADF-------MKMPF 164 (305)
Q Consensus 94 ~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~-v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~-------~~~~~ 164 (305)
....+.++.+||-.|+|. |..+..+++..+.+ |++++.++...+.+++. +...-+.....+. ... .
T Consensus 156 ~~~~~~~g~~vlI~g~g~vG~~a~~lak~~G~~~v~~~~~~~~~~~~~~~~----g~~~vi~~~~~~~~~~~~~~~~~-~ 230 (343)
T cd05285 156 RRAGVRPGDTVLVFGAGPIGLLTAAVAKAFGATKVVVTDIDPSRLEFAKEL----GATHTVNVRTEDTPESAEKIAEL-L 230 (343)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHc----CCcEEeccccccchhHHHHHHHH-h
Confidence 456678889999887764 56666677656776 99999888887766442 2211011111111 111 2
Q ss_pred CCCCeeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 165 PDNSFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 165 ~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
....+|+|+-...- .. .+....+.|+++|.++...
T Consensus 231 ~~~~~d~vld~~g~------~~-----------~~~~~~~~l~~~G~~v~~g 265 (343)
T cd05285 231 GGKGPDVVIECTGA------ES-----------CIQTAIYATRPGGTVVLVG 265 (343)
T ss_pred CCCCCCEEEECCCC------HH-----------HHHHHHHHhhcCCEEEEEc
Confidence 23458988753221 00 3777899999999887643
No 351
>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=86.97 E-value=3 Score=35.43 Aligned_cols=90 Identities=14% Similarity=0.102 Sum_probs=60.6
Q ss_pred cCCCCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEEec
Q 042544 96 LGLKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAI 175 (305)
Q Consensus 96 ~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~ 175 (305)
..+.+++...|+|+-.|.|+-.+.++ +-.|++||-.+-.-.. - ..+.++-...|...+.......|-.+|-
T Consensus 207 ~rL~~~M~avDLGAcPGGWTyqLVkr-~m~V~aVDng~ma~sL-----~---dtg~v~h~r~DGfk~~P~r~~idWmVCD 277 (358)
T COG2933 207 KRLAPGMWAVDLGACPGGWTYQLVKR-NMRVYAVDNGPMAQSL-----M---DTGQVTHLREDGFKFRPTRSNIDWMVCD 277 (358)
T ss_pred hhhcCCceeeecccCCCccchhhhhc-ceEEEEeccchhhhhh-----h---cccceeeeeccCcccccCCCCCceEEee
Confidence 35678999999999999999999976 7899999975533221 1 1235777777877654334567877764
Q ss_pred ccccccCChhhhhhcCCCCCcccHHHHHHHHHhC
Q 042544 176 EATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQA 209 (305)
Q Consensus 176 ~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~g 209 (305)
.+ ..+.. +-..+..+|..|
T Consensus 278 mV----EkP~r-----------v~~li~~Wl~nG 296 (358)
T COG2933 278 MV----EKPAR-----------VAALIAKWLVNG 296 (358)
T ss_pred hh----cCcHH-----------HHHHHHHHHHcc
Confidence 32 33433 345566676654
No 352
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=86.75 E-value=2.7 Score=38.50 Aligned_cols=88 Identities=10% Similarity=0.060 Sum_probs=55.0
Q ss_pred CCCCeEEEEcCCC-ChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEEeccc
Q 042544 99 KSGQKVLDVGCGI-GGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIEA 177 (305)
Q Consensus 99 ~~~~~vLDiGcG~-G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~ 177 (305)
-+|.+|+=+|||. |......++..+++|+.+|+++..++.|+. .|. +.. +..+. . ..+|+|+..-.
T Consensus 200 l~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~~----~G~----~~~--~~~e~-v--~~aDVVI~atG 266 (413)
T cd00401 200 IAGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQAAM----EGY----EVM--TMEEA-V--KEGDIFVTTTG 266 (413)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHHHHHh----cCC----EEc--cHHHH-H--cCCCEEEECCC
Confidence 4688999999995 444444455558899999999988776654 222 221 11111 1 24688875421
Q ss_pred ccccCChhhhhhcCCCCCcccHHH-HHHHHHhCCceEEEe
Q 042544 178 TCHAPDAAEIEIGDGLPDIRSTRK-CLEALKQAGFEVIWE 216 (305)
Q Consensus 178 l~~~~~~~~~~~~~~~~~~~~l~~-~~~~L~~gG~~~i~~ 216 (305)
... .+.. ..+.+++||+++..-
T Consensus 267 -----~~~------------~i~~~~l~~mk~GgilvnvG 289 (413)
T cd00401 267 -----NKD------------IITGEHFEQMKDGAIVCNIG 289 (413)
T ss_pred -----CHH------------HHHHHHHhcCCCCcEEEEeC
Confidence 111 2444 478899999887654
No 353
>PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues. It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A ....
Probab=86.43 E-value=2.3 Score=34.17 Aligned_cols=84 Identities=13% Similarity=0.116 Sum_probs=51.2
Q ss_pred CeEEEEcCCCChHHHHHHhh-cCCeEEEEcCCHHHHHHHHHHHHhcCC--CCCeEEEEcCCCCCC---------CCCCCe
Q 042544 102 QKVLDVGCGIGGPLREIAQF-SSTSVTGLNNNEYQITRGKELNRFAGV--DKTCNFVKADFMKMP---------FPDNSF 169 (305)
Q Consensus 102 ~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~--~~~~~~~~~d~~~~~---------~~~~~f 169 (305)
..|+.+|||-=.....+... ++.+++-+|. |.+++.-++.+...+. +.+.+++..|+.+.. +..+..
T Consensus 80 ~qvV~LGaGlDTr~~Rl~~~~~~~~~~evD~-p~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~~~~~L~~~g~~~~~p 158 (183)
T PF04072_consen 80 RQVVNLGAGLDTRAYRLDNPAGGVRWFEVDL-PEVIALKRRLLPESGARPPANYRYVPADLRDDSWIDALPKAGFDPDRP 158 (183)
T ss_dssp SEEEEET-TT--HHHHHHHTTTTEEEEEEE--HHHHHHHHHHHHHTHHHHHEESSEEES-TTSHHHHHHHHHCTT-TTSE
T ss_pred cEEEEcCCCCCchHHHhhccccceEEEEeCC-HHHHHHHHHHHHhCcccCCcceeEEeccccchhhHHHHHHhCCCCCCC
Confidence 38999999987766666643 2567777777 5666665665554421 124568999998521 334556
Q ss_pred eEEEecccccccCChhh
Q 042544 170 DAVYAIEATCHAPDAAE 186 (305)
Q Consensus 170 D~v~~~~~l~~~~~~~~ 186 (305)
-++++-+++.+++....
T Consensus 159 tl~i~Egvl~Yl~~~~~ 175 (183)
T PF04072_consen 159 TLFIAEGVLMYLSPEQV 175 (183)
T ss_dssp EEEEEESSGGGS-HHHH
T ss_pred eEEEEcchhhcCCHHHH
Confidence 68888888999887643
No 354
>COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=86.29 E-value=5 Score=35.08 Aligned_cols=105 Identities=14% Similarity=0.011 Sum_probs=69.9
Q ss_pred CCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCC--CCCeEEEEcCCCCCC---------CCCCCe
Q 042544 101 GQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGV--DKTCNFVKADFMKMP---------FPDNSF 169 (305)
Q Consensus 101 ~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~--~~~~~~~~~d~~~~~---------~~~~~f 169 (305)
-..|+-+|||-=.-+..+-...+.+|+-+|. |+.++.=++.++..+. +...+++..|+.+-. |..+.-
T Consensus 93 ~~qvViLgaGLDTRayRl~~~~~~~vfEvD~-Pevi~~K~~~l~e~~~~~~~~~~~Va~Dl~~~dw~~~L~~~G~d~~~p 171 (297)
T COG3315 93 IRQVVILGAGLDTRAYRLDWPKGTRVFEVDL-PEVIEFKKKLLAERGATPPAHRRLVAVDLREDDWPQALAAAGFDRSRP 171 (297)
T ss_pred ccEEEEeccccccceeecCCCCCCeEEECCC-cHHHHHHHHHhhhcCCCCCceEEEEeccccccchHHHHHhcCCCcCCC
Confidence 4689999998533333332212478888887 6777766666665543 236889999998422 223344
Q ss_pred eEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEE
Q 042544 170 DAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIW 215 (305)
Q Consensus 170 D~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~ 215 (305)
-++++-+++.+++.....+ ++..+...+.||-.++..
T Consensus 172 t~~iaEGLl~YL~~~~v~~---------ll~~I~~~~~~gS~~~~~ 208 (297)
T COG3315 172 TLWIAEGLLMYLPEEAVDR---------LLSRIAALSAPGSRVAFD 208 (297)
T ss_pred eEEEeccccccCCHHHHHH---------HHHHHHHhCCCCceEEEe
Confidence 5788889999999887654 688888887777666554
No 355
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=86.27 E-value=3 Score=36.87 Aligned_cols=98 Identities=17% Similarity=0.246 Sum_probs=60.1
Q ss_pred HcCCCCCCeEEEEcCCC-ChHHHHHHhhcCCe-EEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCC---CCC-C-CCCC
Q 042544 95 QLGLKSGQKVLDVGCGI-GGPLREIAQFSSTS-VTGLNNNEYQITRGKELNRFAGVDKTCNFVKADF---MKM-P-FPDN 167 (305)
Q Consensus 95 ~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~-v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~---~~~-~-~~~~ 167 (305)
...+.++.+||-.|+|. |..+..+++..+.+ +++++.++...+.+++ .+.. .++..+- ..+ . .+..
T Consensus 154 ~~~~~~~~~vlI~g~g~~g~~~~~lA~~~G~~~v~~~~~~~~~~~~l~~----~g~~---~~~~~~~~~~~~~~~~~~~~ 226 (343)
T cd08236 154 LAGITLGDTVVVIGAGTIGLLAIQWLKILGAKRVIAVDIDDEKLAVARE----LGAD---DTINPKEEDVEKVRELTEGR 226 (343)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH----cCCC---EEecCccccHHHHHHHhCCC
Confidence 44567888999998765 66777777666776 9999998887766543 2221 1211110 000 1 1223
Q ss_pred CeeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 168 SFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 168 ~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
.+|+++... .... .+..+.+.|+++|.++...
T Consensus 227 ~~d~vld~~-----g~~~------------~~~~~~~~l~~~G~~v~~g 258 (343)
T cd08236 227 GADLVIEAA-----GSPA------------TIEQALALARPGGKVVLVG 258 (343)
T ss_pred CCCEEEECC-----CCHH------------HHHHHHHHhhcCCEEEEEc
Confidence 488887531 1111 3778899999999977654
No 356
>COG4017 Uncharacterized protein conserved in archaea [Function unknown]
Probab=85.78 E-value=5.2 Score=32.28 Aligned_cols=71 Identities=14% Similarity=0.128 Sum_probs=48.9
Q ss_pred cCCCCCCeEEEEcCC-CChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEEe
Q 042544 96 LGLKSGQKVLDVGCG-IGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYA 174 (305)
Q Consensus 96 ~~~~~~~~vLDiGcG-~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~ 174 (305)
.....+.+||=+|.= ||.+...+... .++|+.+|+.|.|-.. +++++.|... +.++.+.+|+|+-
T Consensus 40 ~~~~E~~~vli~G~YltG~~~a~~Ls~-~~~vtv~Di~p~~r~~---------lp~~v~Fr~~----~~~~~G~~DlivD 105 (254)
T COG4017 40 LEGEEFKEVLIFGVYLTGNYTAQMLSK-ADKVTVVDIHPFMRGF---------LPNNVKFRNL----LKFIRGEVDLIVD 105 (254)
T ss_pred hcccCcceEEEEEeeehhHHHHHHhcc-cceEEEecCCHHHHhc---------CCCCccHhhh----cCCCCCceeEEEe
Confidence 334567899999874 77777777654 7899999999988542 3455666544 3345678999986
Q ss_pred cccccc
Q 042544 175 IEATCH 180 (305)
Q Consensus 175 ~~~l~~ 180 (305)
.-.+.-
T Consensus 106 lTGlGG 111 (254)
T COG4017 106 LTGLGG 111 (254)
T ss_pred ccccCC
Confidence 544443
No 357
>KOG2360 consensus Proliferation-associated nucleolar protein (NOL1) [Cell cycle control, cell division, chromosome partitioning]
Probab=85.69 E-value=2.2 Score=38.13 Aligned_cols=68 Identities=19% Similarity=0.335 Sum_probs=56.6
Q ss_pred HcCCCCCCeEEEEcCCCChHHHHHHh--hcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCC
Q 042544 95 QLGLKSGQKVLDVGCGIGGPLREIAQ--FSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMP 163 (305)
Q Consensus 95 ~~~~~~~~~vLDiGcG~G~~~~~l~~--~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~ 163 (305)
.+.+.+|.+|+|++|-.|.-+.+++. +...++.|+|.++.-.+..++.+...|.. .++...+|+...+
T Consensus 208 ll~p~~g~~v~d~caapg~KTsH~a~i~~n~gki~afe~d~~r~~tl~~~l~~ag~~-~~~~~~~df~~t~ 277 (413)
T KOG2360|consen 208 LLDPRPGSRVIDTCAAPGNKTSHLAAIMRNQGKIYAFERDAKRAATLRKLLKIAGVS-IVESVEGDFLNTA 277 (413)
T ss_pred hcCCCCCCceeeeccccccchhhHHHHhhccCCcchhhhhhHHHHHHHHHHHHcCCC-ccccccccccCCC
Confidence 56777889999999999999999884 34689999999999999888888888764 5677788887743
No 358
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=85.45 E-value=3.2 Score=36.89 Aligned_cols=101 Identities=18% Similarity=0.149 Sum_probs=57.1
Q ss_pred HcCCCCCCeEEEEcCC-CChHHHHHHhhcCCe-EEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCC--CCCCCCee
Q 042544 95 QLGLKSGQKVLDVGCG-IGGPLREIAQFSSTS-VTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKM--PFPDNSFD 170 (305)
Q Consensus 95 ~~~~~~~~~vLDiGcG-~G~~~~~l~~~~~~~-v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~fD 170 (305)
...+.++.+||=.||| .|..+..+++..+.+ |++++.++..++.+++ .|...-+.....+...+ ......+|
T Consensus 155 ~~~~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~----~Ga~~~i~~~~~~~~~~~~~~~~~~~d 230 (347)
T PRK10309 155 LAQGCEGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINSEKLALAKS----LGAMQTFNSREMSAPQIQSVLRELRFD 230 (347)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHH----cCCceEecCcccCHHHHHHHhcCCCCC
Confidence 3456788899999875 344555566555775 7899999988877644 23211011111010000 01123466
Q ss_pred -EEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 171 -AVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 171 -~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
+|+-. ..... .+.+..+.|++||.+++.-
T Consensus 231 ~~v~d~-----~G~~~------------~~~~~~~~l~~~G~iv~~G 260 (347)
T PRK10309 231 QLILET-----AGVPQ------------TVELAIEIAGPRAQLALVG 260 (347)
T ss_pred eEEEEC-----CCCHH------------HHHHHHHHhhcCCEEEEEc
Confidence 55421 11111 4788889999999988764
No 359
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=85.17 E-value=5.6 Score=34.91 Aligned_cols=96 Identities=27% Similarity=0.289 Sum_probs=58.9
Q ss_pred cCCCCCCeEEEEcC-CCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcC----CCC--CCCCCCC
Q 042544 96 LGLKSGQKVLDVGC-GIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKAD----FMK--MPFPDNS 168 (305)
Q Consensus 96 ~~~~~~~~vLDiGc-G~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d----~~~--~~~~~~~ 168 (305)
.++.||.+|-=+|. |-|.++..+++..+.+|+++|-+..--+.+-+. .|.+ .|+..- ... ...-|.-
T Consensus 177 ~g~~pG~~vgI~GlGGLGh~aVq~AKAMG~rV~vis~~~~kkeea~~~---LGAd---~fv~~~~d~d~~~~~~~~~dg~ 250 (360)
T KOG0023|consen 177 SGLGPGKWVGIVGLGGLGHMAVQYAKAMGMRVTVISTSSKKKEEAIKS---LGAD---VFVDSTEDPDIMKAIMKTTDGG 250 (360)
T ss_pred cCCCCCcEEEEecCcccchHHHHHHHHhCcEEEEEeCCchhHHHHHHh---cCcc---eeEEecCCHHHHHHHHHhhcCc
Confidence 45678888777774 589999999976799999999997555544443 3332 222211 110 0011233
Q ss_pred eeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 169 FDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 169 fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
.|-|.+. .. ..+..+.+.||++|.+++.-
T Consensus 251 ~~~v~~~--a~-----------------~~~~~~~~~lk~~Gt~V~vg 279 (360)
T KOG0023|consen 251 IDTVSNL--AE-----------------HALEPLLGLLKVNGTLVLVG 279 (360)
T ss_pred ceeeeec--cc-----------------cchHHHHHHhhcCCEEEEEe
Confidence 3333321 11 14778899999999998865
No 360
>PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B.
Probab=85.11 E-value=3.7 Score=31.62 Aligned_cols=46 Identities=17% Similarity=0.295 Sum_probs=28.1
Q ss_pred HHHHHHHHHHcCCCCCCeEEEEcCCCChHHHHHHh-hcCCeEEEEcCC
Q 042544 86 KRHEHFLALQLGLKSGQKVLDVGCGIGGPLREIAQ-FSSTSVTGLNNN 132 (305)
Q Consensus 86 ~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s 132 (305)
+...++.......-+ .-|||+|-|.|..--++.+ .++.+|+.+|-.
T Consensus 15 R~~L~~a~~~v~~~~-G~VlElGLGNGRTydHLRe~~p~R~I~vfDR~ 61 (160)
T PF12692_consen 15 RDCLNWAAAQVAGLP-GPVLELGLGNGRTYDHLREIFPDRRIYVFDRA 61 (160)
T ss_dssp HHHHHHHHHHTTT---S-EEEE--TTSHHHHHHHHH--SS-EEEEESS
T ss_pred HHHHHHHHHHhcCCC-CceEEeccCCCccHHHHHHhCCCCeEEEEeee
Confidence 334445554444434 4799999999999999985 578999999974
No 361
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=84.45 E-value=9.7 Score=33.23 Aligned_cols=95 Identities=18% Similarity=0.247 Sum_probs=58.8
Q ss_pred HHcCCCCCCeEEEEcCC-CChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEE
Q 042544 94 LQLGLKSGQKVLDVGCG-IGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAV 172 (305)
Q Consensus 94 ~~~~~~~~~~vLDiGcG-~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v 172 (305)
....+.++.+||=.|+| .|..+..+++..+.+|++++.++...+.+++ .|... . .+.... .....+|++
T Consensus 149 ~~~~~~~g~~vlV~g~g~vg~~~~q~a~~~G~~vi~~~~~~~~~~~~~~----~g~~~----~-~~~~~~-~~~~~~d~v 218 (319)
T cd08242 149 EQVPITPGDKVAVLGDGKLGLLIAQVLALTGPDVVLVGRHSEKLALARR----LGVET----V-LPDEAE-SEGGGFDVV 218 (319)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHH----cCCcE----E-eCcccc-ccCCCCCEE
Confidence 34567788899988754 2334444455568899999999988887765 23221 1 111111 233568888
Q ss_pred EecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEE
Q 042544 173 YAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIW 215 (305)
Q Consensus 173 ~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~ 215 (305)
+-.. .... .+..+.+.|+++|.+++.
T Consensus 219 id~~-----g~~~------------~~~~~~~~l~~~g~~v~~ 244 (319)
T cd08242 219 VEAT-----GSPS------------GLELALRLVRPRGTVVLK 244 (319)
T ss_pred EECC-----CChH------------HHHHHHHHhhcCCEEEEE
Confidence 7531 1111 377788899999988873
No 362
>PLN02827 Alcohol dehydrogenase-like
Probab=84.03 E-value=3.8 Score=37.12 Aligned_cols=101 Identities=17% Similarity=0.261 Sum_probs=57.5
Q ss_pred HcCCCCCCeEEEEcCC-CChHHHHHHhhcCC-eEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEc--CCCC-C-CCCCCC
Q 042544 95 QLGLKSGQKVLDVGCG-IGGPLREIAQFSST-SVTGLNNNEYQITRGKELNRFAGVDKTCNFVKA--DFMK-M-PFPDNS 168 (305)
Q Consensus 95 ~~~~~~~~~vLDiGcG-~G~~~~~l~~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~--d~~~-~-~~~~~~ 168 (305)
...+.++.+||=.|+| .|..+..+++..+. .|+++|.++...+.+++ .|...-+..... +... + ....+.
T Consensus 188 ~~~~~~g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~~~~~~~a~~----lGa~~~i~~~~~~~~~~~~v~~~~~~g 263 (378)
T PLN02827 188 VADVSKGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPEKAEKAKT----FGVTDFINPNDLSEPIQQVIKRMTGGG 263 (378)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHH----cCCcEEEcccccchHHHHHHHHHhCCC
Confidence 3467789999999875 33444555654566 58999999988877754 233211111100 1100 0 011125
Q ss_pred eeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhC-CceEEEe
Q 042544 169 FDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQA-GFEVIWE 216 (305)
Q Consensus 169 fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~g-G~~~i~~ 216 (305)
+|+|+-.-. ... .+....+.|++| |.+++.-
T Consensus 264 ~d~vid~~G-----~~~------------~~~~~l~~l~~g~G~iv~~G 295 (378)
T PLN02827 264 ADYSFECVG-----DTG------------IATTALQSCSDGWGLTVTLG 295 (378)
T ss_pred CCEEEECCC-----ChH------------HHHHHHHhhccCCCEEEEEC
Confidence 788764211 111 377788899998 9887643
No 363
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=83.94 E-value=4.1 Score=36.02 Aligned_cols=99 Identities=18% Similarity=0.245 Sum_probs=58.0
Q ss_pred cCCCCCCeEEEEcCC-CChHHHHHHhhcCC-eEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCC-C--CCCCCCee
Q 042544 96 LGLKSGQKVLDVGCG-IGGPLREIAQFSST-SVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMK-M--PFPDNSFD 170 (305)
Q Consensus 96 ~~~~~~~~vLDiGcG-~G~~~~~l~~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~-~--~~~~~~fD 170 (305)
..+.++.+||-.|+| .|..+..+++..+. .+++++.++...+.+++. +...-+.....+..+ + ..+.+.+|
T Consensus 163 ~~~~~~~~VlI~g~g~vg~~~iqlak~~g~~~v~~~~~~~~~~~~~~~~----g~~~vi~~~~~~~~~~i~~~~~~~~~d 238 (347)
T cd05278 163 AGIKPGSTVAVIGAGPVGLCAVAGARLLGAARIIAVDSNPERLDLAKEA----GATDIINPKNGDIVEQILELTGGRGVD 238 (347)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHh----CCcEEEcCCcchHHHHHHHHcCCCCCc
Confidence 456678899987775 36666777765564 899998888777665542 211101111111101 0 01235689
Q ss_pred EEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEE
Q 042544 171 AVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIW 215 (305)
Q Consensus 171 ~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~ 215 (305)
+++.... .. . .+.+..+.|+++|.++..
T Consensus 239 ~vld~~g-----~~-~-----------~~~~~~~~l~~~G~~v~~ 266 (347)
T cd05278 239 CVIEAVG-----FE-E-----------TFEQAVKVVRPGGTIANV 266 (347)
T ss_pred EEEEccC-----CH-H-----------HHHHHHHHhhcCCEEEEE
Confidence 8875311 10 1 478889999999988754
No 364
>KOG1197 consensus Predicted quinone oxidoreductase [Energy production and conversion; General function prediction only]
Probab=83.42 E-value=13 Score=31.74 Aligned_cols=101 Identities=22% Similarity=0.288 Sum_probs=65.8
Q ss_pred HHcCCCCCCeEEEE--cCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCC--CCCC-CCC
Q 042544 94 LQLGLKSGQKVLDV--GCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMK--MPFP-DNS 168 (305)
Q Consensus 94 ~~~~~~~~~~vLDi--GcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~--~~~~-~~~ 168 (305)
+..++++|.+||-- ..|.|..+..+++..+.++++.--+.+-.++|+++ |...-|.+...|+.+ ..+. ...
T Consensus 140 e~y~vkpGhtVlvhaAAGGVGlll~Ql~ra~~a~tI~~asTaeK~~~aken----G~~h~I~y~~eD~v~~V~kiTngKG 215 (336)
T KOG1197|consen 140 EAYNVKPGHTVLVHAAAGGVGLLLCQLLRAVGAHTIATASTAEKHEIAKEN----GAEHPIDYSTEDYVDEVKKITNGKG 215 (336)
T ss_pred HhcCCCCCCEEEEEeccccHHHHHHHHHHhcCcEEEEEeccHHHHHHHHhc----CCcceeeccchhHHHHHHhccCCCC
Confidence 35678899888754 34667777778766689999998888888887774 433334444444433 1222 234
Q ss_pred eeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 169 FDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 169 fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
.|+++-+-- . .++..-..+||++|.++-.-
T Consensus 216 Vd~vyDsvG-----~-------------dt~~~sl~~Lk~~G~mVSfG 245 (336)
T KOG1197|consen 216 VDAVYDSVG-----K-------------DTFAKSLAALKPMGKMVSFG 245 (336)
T ss_pred ceeeecccc-----c-------------hhhHHHHHHhccCceEEEec
Confidence 677752211 1 15778889999999987754
No 365
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=83.35 E-value=15 Score=33.24 Aligned_cols=118 Identities=15% Similarity=0.167 Sum_probs=62.8
Q ss_pred HcCCCCCCeEEEEcCCCChH----HHHHHhh----cCCeEEEEcC----CHHHHHHHHHHHH----hcCCCCCeEEEEc-
Q 042544 95 QLGLKSGQKVLDVGCGIGGP----LREIAQF----SSTSVTGLNN----NEYQITRGKELNR----FAGVDKTCNFVKA- 157 (305)
Q Consensus 95 ~~~~~~~~~vLDiGcG~G~~----~~~l~~~----~~~~v~gvD~----s~~~l~~a~~~~~----~~~~~~~~~~~~~- 157 (305)
.+.-.+.-+|+|+|.|.|.. ...|+.. |..++|||+. +...++.+.+++. ..|++ .+|...
T Consensus 105 A~~g~~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~~g~rL~~fA~~lgv~--fef~~v~ 182 (374)
T PF03514_consen 105 AFEGERRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQETGRRLAEFARSLGVP--FEFHPVV 182 (374)
T ss_pred HhccCcceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHHHHHHHHHHHHHcCcc--EEEEecc
Confidence 33444667999999999962 2233333 2369999999 7777777766643 33443 455442
Q ss_pred --CCCCCC-----CCCCCeeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEeccC
Q 042544 158 --DFMKMP-----FPDNSFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEKDL 219 (305)
Q Consensus 158 --d~~~~~-----~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~~~~ 219 (305)
+.+.+. ..++..=+|-+...+||+.+...... .....+-...+.|+|.- +++.+.+.
T Consensus 183 ~~~~e~l~~~~l~~~~~E~laVn~~~~Lh~l~~~~~~~~----~~~~~~L~~ir~L~P~v-vv~~E~ea 246 (374)
T PF03514_consen 183 VESLEDLDPSMLRLRPGEALAVNCMFQLHHLLDESGALE----NPRDAFLRVIRSLNPKV-VVLVEQEA 246 (374)
T ss_pred cCchhhCCHHHhCccCCcEEEEEeehhhhhhcccccccc----chHHHHHHHHHhcCCCE-EEEEeecC
Confidence 333321 22232334445556788874321100 00112334455678874 44444443
No 366
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=83.15 E-value=2.7 Score=37.80 Aligned_cols=98 Identities=15% Similarity=0.220 Sum_probs=59.3
Q ss_pred HcCCCCCCeEEEEcCCC-ChHHHHHHhhcCC-eEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCC-----CCCCC
Q 042544 95 QLGLKSGQKVLDVGCGI-GGPLREIAQFSST-SVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKM-----PFPDN 167 (305)
Q Consensus 95 ~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~-----~~~~~ 167 (305)
...+.++.+||=.|+|. |..+..+++..+. .++++|.++...+.+++. +.. .++..+-..+ .....
T Consensus 181 ~~~~~~g~~vlI~g~g~vG~~~~~la~~~G~~~v~~~~~~~~k~~~~~~~----g~~---~~i~~~~~~~~~~v~~~~~~ 253 (365)
T cd08278 181 VLKPRPGSSIAVFGAGAVGLAAVMAAKIAGCTTIIAVDIVDSRLELAKEL----GAT---HVINPKEEDLVAAIREITGG 253 (365)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHc----CCc---EEecCCCcCHHHHHHHHhCC
Confidence 34567788999888753 5566666655577 699999999887766542 221 1221111110 01124
Q ss_pred CeeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 168 SFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 168 ~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
.+|+|+-.- .... .+..+.+.|+++|.++...
T Consensus 254 ~~d~vld~~-----g~~~------------~~~~~~~~l~~~G~~v~~g 285 (365)
T cd08278 254 GVDYALDTT-----GVPA------------VIEQAVDALAPRGTLALVG 285 (365)
T ss_pred CCcEEEECC-----CCcH------------HHHHHHHHhccCCEEEEeC
Confidence 588887431 1111 4788899999999988754
No 367
>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=82.83 E-value=19 Score=31.45 Aligned_cols=95 Identities=23% Similarity=0.260 Sum_probs=57.4
Q ss_pred HHcCCCCCCeEEEEcCC-CChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEE
Q 042544 94 LQLGLKSGQKVLDVGCG-IGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAV 172 (305)
Q Consensus 94 ~~~~~~~~~~vLDiGcG-~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v 172 (305)
....+.++.+||=.||| .|..+..+++..+.+|++++.++...+.+++ .|.. .++.. ... +...+|++
T Consensus 161 ~~~~~~~~~~vlV~g~g~vg~~~~~la~~~g~~v~~~~~~~~~~~~~~~----~g~~---~~~~~--~~~--~~~~vD~v 229 (329)
T cd08298 161 KLAGLKPGQRLGLYGFGASAHLALQIARYQGAEVFAFTRSGEHQELARE----LGAD---WAGDS--DDL--PPEPLDAA 229 (329)
T ss_pred HhhCCCCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEcCChHHHHHHHH----hCCc---EEecc--Ccc--CCCcccEE
Confidence 34567778888888765 2233344555568899999998877666633 2321 11111 111 23457877
Q ss_pred EecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 173 YAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 173 ~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
+.... ... .+..+.+.|+++|.++...
T Consensus 230 i~~~~-----~~~------------~~~~~~~~l~~~G~~v~~g 256 (329)
T cd08298 230 IIFAP-----VGA------------LVPAALRAVKKGGRVVLAG 256 (329)
T ss_pred EEcCC-----cHH------------HHHHHHHHhhcCCEEEEEc
Confidence 64311 111 4888999999999988754
No 368
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=82.63 E-value=14 Score=33.75 Aligned_cols=47 Identities=21% Similarity=0.363 Sum_probs=35.3
Q ss_pred cCCCCCCeEEEEc-CC-CChHHHHHHhhcC---CeEEEEcCCHHHHHHHHHH
Q 042544 96 LGLKSGQKVLDVG-CG-IGGPLREIAQFSS---TSVTGLNNNEYQITRGKEL 142 (305)
Q Consensus 96 ~~~~~~~~vLDiG-cG-~G~~~~~l~~~~~---~~v~gvD~s~~~l~~a~~~ 142 (305)
..+.++.+||=+| +| .|..+..+++..+ .+|+++|.++..++.+++.
T Consensus 171 ~~~~~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~ 222 (410)
T cd08238 171 MGIKPGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRL 222 (410)
T ss_pred cCCCCCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHh
Confidence 4567888999887 34 6667777775433 3799999999999888774
No 369
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=81.98 E-value=1.4 Score=39.88 Aligned_cols=58 Identities=9% Similarity=0.036 Sum_probs=49.0
Q ss_pred CCeEEEEcCCCCC--CCCCCCeeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 150 KTCNFVKADFMKM--PFPDNSFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 150 ~~~~~~~~d~~~~--~~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
++++++++++.+. ..+++++|.++....+.++++....+ .++++.+.++|||++++-.
T Consensus 275 drv~i~t~si~~~L~~~~~~s~~~~vL~D~~Dwm~~~~~~~---------~~~~l~~~~~pgaRV~~Rs 334 (380)
T PF11899_consen 275 DRVRIHTDSIEEVLRRLPPGSFDRFVLSDHMDWMDPEQLNE---------EWQELARTARPGARVLWRS 334 (380)
T ss_pred CeEEEEeccHHHHHHhCCCCCeeEEEecchhhhCCHHHHHH---------HHHHHHHHhCCCCEEEEee
Confidence 6899999999873 25679999999999999998876544 5899999999999999854
No 370
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=81.66 E-value=7.7 Score=34.83 Aligned_cols=97 Identities=19% Similarity=0.166 Sum_probs=54.1
Q ss_pred CCCCCCeEEEEcCC-CChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEE-cCCCCCCCCCCCeeEEEe
Q 042544 97 GLKSGQKVLDVGCG-IGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVK-ADFMKMPFPDNSFDAVYA 174 (305)
Q Consensus 97 ~~~~~~~vLDiGcG-~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~-~d~~~~~~~~~~fD~v~~ 174 (305)
.+.++.+||=.|+| .|..+..+++..+.+|++++.++.....+. ...|.. .++. .+...+.-..+.+|+|+-
T Consensus 180 ~~~~g~~VlV~G~G~vG~~avq~Ak~~Ga~vi~~~~~~~~~~~~~---~~~Ga~---~vi~~~~~~~~~~~~~~~D~vid 253 (360)
T PLN02586 180 MTEPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISSSSNKEDEAI---NRLGAD---SFLVSTDPEKMKAAIGTMDYIID 253 (360)
T ss_pred ccCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCcchhhhHH---HhCCCc---EEEcCCCHHHHHhhcCCCCEEEE
Confidence 34578899988886 455666666656889999988765432221 122321 1111 110011000124787764
Q ss_pred cccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 175 IEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 175 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
.-. ... .+....+.|+++|.++...
T Consensus 254 ~~g-----~~~------------~~~~~~~~l~~~G~iv~vG 278 (360)
T PLN02586 254 TVS-----AVH------------ALGPLLGLLKVNGKLITLG 278 (360)
T ss_pred CCC-----CHH------------HHHHHHHHhcCCcEEEEeC
Confidence 211 111 4777889999999988753
No 371
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=81.25 E-value=5.4 Score=34.19 Aligned_cols=72 Identities=17% Similarity=0.222 Sum_probs=54.5
Q ss_pred CCCeEEEEcCCCChHHHHHH-hhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCC---CCeeEEEe
Q 042544 100 SGQKVLDVGCGIGGPLREIA-QFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPD---NSFDAVYA 174 (305)
Q Consensus 100 ~~~~vLDiGcG~G~~~~~l~-~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~---~~fD~v~~ 174 (305)
.|..|+=+| -.-..++.++ .....+|..+||++..+....+-+...|.. +++.+.-|+.. |+|+ ..||+.+.
T Consensus 152 ~gK~I~vvG-DDDLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee~g~~-~ie~~~~Dlr~-plpe~~~~kFDvfiT 227 (354)
T COG1568 152 EGKEIFVVG-DDDLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEELGYN-NIEAFVFDLRN-PLPEDLKRKFDVFIT 227 (354)
T ss_pred CCCeEEEEc-CchhhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHhCcc-chhheeehhcc-cChHHHHhhCCeeec
Confidence 567899999 4444555555 334579999999999999998888888874 68899999986 4543 67998763
No 372
>PRK11524 putative methyltransferase; Provisional
Probab=81.07 E-value=1.1 Score=38.98 Aligned_cols=60 Identities=18% Similarity=0.196 Sum_probs=37.1
Q ss_pred CeEEEEcCCCCC--CCCCCCeeEEEecccccc---cCC-------hhhhhhcCCCCCcccHHHHHHHHHhCCceEEE
Q 042544 151 TCNFVKADFMKM--PFPDNSFDAVYAIEATCH---APD-------AAEIEIGDGLPDIRSTRKCLEALKQAGFEVIW 215 (305)
Q Consensus 151 ~~~~~~~d~~~~--~~~~~~fD~v~~~~~l~~---~~~-------~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~ 215 (305)
...++++|..+. .+++++||+|++.--..- ..+ ...... ....+.++.++|||||.+++.
T Consensus 8 ~~~i~~gD~~~~l~~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~-----l~~~l~~~~rvLK~~G~i~i~ 79 (284)
T PRK11524 8 AKTIIHGDALTELKKIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDW-----LYEWIDECHRVLKKQGTMYIM 79 (284)
T ss_pred CCEEEeccHHHHHHhcccCcccEEEECCCcccccccccccccccHHHHHHH-----HHHHHHHHHHHhCCCcEEEEE
Confidence 356788888773 467789999998432210 000 000000 012689999999999998875
No 373
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=80.62 E-value=7.6 Score=34.52 Aligned_cols=97 Identities=19% Similarity=0.195 Sum_probs=58.7
Q ss_pred HcCCCCCCeEEEEcCC-CChHHHHHHhhcCC-eEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCC-----C-CCC
Q 042544 95 QLGLKSGQKVLDVGCG-IGGPLREIAQFSST-SVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKM-----P-FPD 166 (305)
Q Consensus 95 ~~~~~~~~~vLDiGcG-~G~~~~~l~~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~-----~-~~~ 166 (305)
...+.++.+||=.|+| .|..+..+++..+. .|+++|.++..++.+++ .|.. .++..+-..+ . ...
T Consensus 161 ~~~~~~g~~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~----~g~~---~~v~~~~~~~~~~i~~~~~~ 233 (351)
T cd08285 161 LANIKLGDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRVELAKE----YGAT---DIVDYKNGDVVEQILKLTGG 233 (351)
T ss_pred ccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH----cCCc---eEecCCCCCHHHHHHHHhCC
Confidence 4567788899988875 34555566655566 69999999888777664 2322 1211111110 0 122
Q ss_pred CCeeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEE
Q 042544 167 NSFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIW 215 (305)
Q Consensus 167 ~~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~ 215 (305)
..+|+|+.... ... .+.++.+.|+++|.++..
T Consensus 234 ~~~d~vld~~g-----~~~------------~~~~~~~~l~~~G~~v~~ 265 (351)
T cd08285 234 KGVDAVIIAGG-----GQD------------TFEQALKVLKPGGTISNV 265 (351)
T ss_pred CCCcEEEECCC-----CHH------------HHHHHHHHhhcCCEEEEe
Confidence 45888874211 111 478889999999988764
No 374
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=80.04 E-value=3.2 Score=37.51 Aligned_cols=42 Identities=21% Similarity=0.188 Sum_probs=29.3
Q ss_pred CCCeEEEEcCC-CChHHHHHHhhcCCeEEEEcCCHHHHHHHHH
Q 042544 100 SGQKVLDVGCG-IGGPLREIAQFSSTSVTGLNNNEYQITRGKE 141 (305)
Q Consensus 100 ~~~~vLDiGcG-~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~ 141 (305)
++.+|+=+|+| .|..+...+...+++|+.+|.++..++.+..
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~~~~~l~~ 208 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGLGATVTILDINIDRLRQLDA 208 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHH
Confidence 34578989887 4455555554457899999999877655443
No 375
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=79.99 E-value=6.5 Score=34.70 Aligned_cols=97 Identities=16% Similarity=0.200 Sum_probs=57.5
Q ss_pred cCCCCCCeEEEEcCC-CChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCC---CCCCCeeE
Q 042544 96 LGLKSGQKVLDVGCG-IGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMP---FPDNSFDA 171 (305)
Q Consensus 96 ~~~~~~~~vLDiGcG-~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~---~~~~~fD~ 171 (305)
+.+.++.+||=.||| .|..+..+++..+.+|+.++.++..++.+++ .|.. .++...-.++. .....+|+
T Consensus 159 ~~~~~~~~vlV~g~g~iG~~~~~~a~~~G~~vi~~~~~~~~~~~~~~----~g~~---~~i~~~~~~~~~~~~~~~~~d~ 231 (333)
T cd08296 159 SGAKPGDLVAVQGIGGLGHLAVQYAAKMGFRTVAISRGSDKADLARK----LGAH---HYIDTSKEDVAEALQELGGAKL 231 (333)
T ss_pred cCCCCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHH----cCCc---EEecCCCccHHHHHHhcCCCCE
Confidence 467788899988864 3445555565568899999999887777644 2321 11111110100 00124787
Q ss_pred EEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 172 VYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 172 v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
++.. ..... .+....+.|+++|.++...
T Consensus 232 vi~~-----~g~~~------------~~~~~~~~l~~~G~~v~~g 259 (333)
T cd08296 232 ILAT-----APNAK------------AISALVGGLAPRGKLLILG 259 (333)
T ss_pred EEEC-----CCchH------------HHHHHHHHcccCCEEEEEe
Confidence 7642 11111 4778899999999887653
No 376
>KOG2912 consensus Predicted DNA methylase [Function unknown]
Probab=79.57 E-value=5.9 Score=34.66 Aligned_cols=74 Identities=11% Similarity=0.082 Sum_probs=51.2
Q ss_pred EEEEcCCCChHHHHHH-hhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCC--C-----CCCCCCeeEEEec
Q 042544 104 VLDVGCGIGGPLREIA-QFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMK--M-----PFPDNSFDAVYAI 175 (305)
Q Consensus 104 vLDiGcG~G~~~~~l~-~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~--~-----~~~~~~fD~v~~~ 175 (305)
-+|||.|+-..--.+. ...+...+++|+....+..|..++...++...+.+++..... + ..++..||++.|+
T Consensus 106 GiDIgtgasci~~llg~rq~n~~f~~teidd~s~~~a~snV~qn~lss~ikvV~~~~~ktll~d~~~~~~e~~ydFcMcN 185 (419)
T KOG2912|consen 106 GIDIGTGASCIYPLLGARQNNWYFLATEIDDMSFNYAKSNVEQNNLSSLIKVVKVEPQKTLLMDALKEESEIIYDFCMCN 185 (419)
T ss_pred eeeccCchhhhHHhhhchhccceeeeeeccccccchhhccccccccccceeeEEecchhhcchhhhccCccceeeEEecC
Confidence 4788877644333332 334688999999999999999999998887777777764432 1 1224568988886
Q ss_pred cc
Q 042544 176 EA 177 (305)
Q Consensus 176 ~~ 177 (305)
--
T Consensus 186 PP 187 (419)
T KOG2912|consen 186 PP 187 (419)
T ss_pred Cc
Confidence 53
No 377
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=79.56 E-value=28 Score=30.99 Aligned_cols=94 Identities=19% Similarity=0.249 Sum_probs=54.8
Q ss_pred CCCCeEEEEcCC-CChHHHHHHhhcCC-eEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCC--------C-CCCC
Q 042544 99 KSGQKVLDVGCG-IGGPLREIAQFSST-SVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKM--------P-FPDN 167 (305)
Q Consensus 99 ~~~~~vLDiGcG-~G~~~~~l~~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~--------~-~~~~ 167 (305)
.++.+||=.|+| .|..+..+++..+. +|++++.++...+.+++ .|.. .++..+-... . ....
T Consensus 176 ~~g~~vlI~g~g~vG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~----~g~~---~vi~~~~~~~~~~~~~i~~~~~~~ 248 (361)
T cd08231 176 GAGDTVVVQGAGPLGLYAVAAAKLAGARRVIVIDGSPERLELARE----FGAD---ATIDIDELPDPQRRAIVRDITGGR 248 (361)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----cCCC---eEEcCcccccHHHHHHHHHHhCCC
Confidence 478888888764 33444555655577 99999998887766543 2332 1111110000 0 1124
Q ss_pred CeeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 168 SFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 168 ~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
.+|+|+-... .. . .+....+.|+++|.++...
T Consensus 249 ~~d~vid~~g-----~~-~-----------~~~~~~~~l~~~G~~v~~g 280 (361)
T cd08231 249 GADVVIEASG-----HP-A-----------AVPEGLELLRRGGTYVLVG 280 (361)
T ss_pred CCcEEEECCC-----Ch-H-----------HHHHHHHHhccCCEEEEEc
Confidence 5888874311 11 1 3777889999999988653
No 378
>PRK10458 DNA cytosine methylase; Provisional
Probab=79.21 E-value=16 Score=34.24 Aligned_cols=59 Identities=19% Similarity=0.181 Sum_probs=39.9
Q ss_pred CCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCC
Q 042544 101 GQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKM 162 (305)
Q Consensus 101 ~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~ 162 (305)
..+++|+-||.|.+..-+.....-.|.++|+++.+.+.-+.+... .+.......|+..+
T Consensus 88 ~~~~iDLFsGiGGl~lGfe~aG~~~v~a~Eid~~A~~TY~~N~~~---~p~~~~~~~DI~~i 146 (467)
T PRK10458 88 AFRFIDLFAGIGGIRRGFEAIGGQCVFTSEWNKHAVRTYKANWYC---DPATHRFNEDIRDI 146 (467)
T ss_pred CceEEEeCcCccHHHHHHHHcCCEEEEEEechHHHHHHHHHHcCC---CCccceeccChhhC
Confidence 569999999999999998764334567899999887765554311 11234445566554
No 379
>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=79.13 E-value=9.7 Score=34.34 Aligned_cols=113 Identities=12% Similarity=0.169 Sum_probs=66.9
Q ss_pred HHHHHHcCCCCCCeEEEEcCCCChHHHHHHhhcC-CeEEEEcCCHHHHHHHHH-------HHHhcCC-CCCeEEEEcCCC
Q 042544 90 HFLALQLGLKSGQKVLDVGCGIGGPLREIAQFSS-TSVTGLNNNEYQITRGKE-------LNRFAGV-DKTCNFVKADFM 160 (305)
Q Consensus 90 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~v~gvD~s~~~l~~a~~-------~~~~~~~-~~~~~~~~~d~~ 160 (305)
.-+...+.+.++..-.|+|.|.|......+.+.+ ..-+|+++....-+.|.. ...-.|- ...++.+++++.
T Consensus 182 ~si~dEl~~g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~~~i~gsf~ 261 (419)
T KOG3924|consen 182 RSIVDELKLGPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNKIETIHGSFL 261 (419)
T ss_pred HHHHHHhccCCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCceeecccccC
Confidence 3344567888999999999999999999886533 456777765433332222 2222233 345778888876
Q ss_pred CCCC---CCCCeeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEE
Q 042544 161 KMPF---PDNSFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVI 214 (305)
Q Consensus 161 ~~~~---~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i 214 (305)
+-.+ -....++|++.++...-+.. . -+.++..-+++|-.++-
T Consensus 262 ~~~~v~eI~~eatvi~vNN~~Fdp~L~-l-----------r~~eil~~ck~gtrIiS 306 (419)
T KOG3924|consen 262 DPKRVTEIQTEATVIFVNNVAFDPELK-L-----------RSKEILQKCKDGTRIIS 306 (419)
T ss_pred CHHHHHHHhhcceEEEEecccCCHHHH-H-----------hhHHHHhhCCCcceEec
Confidence 5221 12346777776654422211 1 24567777776655444
No 380
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=78.96 E-value=6.9 Score=34.78 Aligned_cols=102 Identities=19% Similarity=0.221 Sum_probs=59.1
Q ss_pred HHcCCCCCCeEEEEcCC-CChHHHHHHhhcCC-eEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCC-C-C-CCCCC
Q 042544 94 LQLGLKSGQKVLDVGCG-IGGPLREIAQFSST-SVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMK-M-P-FPDNS 168 (305)
Q Consensus 94 ~~~~~~~~~~vLDiGcG-~G~~~~~l~~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~-~-~-~~~~~ 168 (305)
....+.++.+||=.|+| .|..+..+++..+. .|++++.++...+.+++. |...-+.....+..+ + . .....
T Consensus 166 ~~~~~~~g~~vlI~g~g~vG~~a~q~a~~~G~~~v~~~~~~~~~~~~~~~~----ga~~~i~~~~~~~~~~l~~~~~~~~ 241 (351)
T cd08233 166 RRSGFKPGDTALVLGAGPIGLLTILALKAAGASKIIVSEPSEARRELAEEL----GATIVLDPTEVDVVAEVRKLTGGGG 241 (351)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh----CCCEEECCCccCHHHHHHHHhCCCC
Confidence 34567788899888764 34455555655577 899999999888777542 322111111111110 0 0 12234
Q ss_pred eeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 169 FDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 169 fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
+|+|+-... ... .+..+.+.|+++|.++...
T Consensus 242 ~d~vid~~g-----~~~------------~~~~~~~~l~~~G~~v~~g 272 (351)
T cd08233 242 VDVSFDCAG-----VQA------------TLDTAIDALRPRGTAVNVA 272 (351)
T ss_pred CCEEEECCC-----CHH------------HHHHHHHhccCCCEEEEEc
Confidence 888874321 111 3778889999999877654
No 381
>cd08241 QOR1 Quinone oxidoreductase (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic
Probab=77.53 E-value=14 Score=31.82 Aligned_cols=97 Identities=19% Similarity=0.262 Sum_probs=58.6
Q ss_pred HcCCCCCCeEEEEcC--CCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCC-----C-CCC
Q 042544 95 QLGLKSGQKVLDVGC--GIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKM-----P-FPD 166 (305)
Q Consensus 95 ~~~~~~~~~vLDiGc--G~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~-----~-~~~ 166 (305)
...+.++.+||-.|| +.|..+..++...+.+|++++.++...+.+++ .+.. .++..+-... . .+.
T Consensus 134 ~~~~~~~~~vli~g~~~~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~----~g~~---~~~~~~~~~~~~~i~~~~~~ 206 (323)
T cd08241 134 RARLQPGETVLVLGAAGGVGLAAVQLAKALGARVIAAASSEEKLALARA----LGAD---HVIDYRDPDLRERVKALTGG 206 (323)
T ss_pred hcCCCCCCEEEEEcCCchHHHHHHHHHHHhCCEEEEEeCCHHHHHHHHH----cCCc---eeeecCCccHHHHHHHHcCC
Confidence 356678899999998 35556666665568899999999887766643 2321 1111111110 0 122
Q ss_pred CCeeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 167 NSFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 167 ~~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
..+|+++.... .. .+..+.+.++++|.++...
T Consensus 207 ~~~d~v~~~~g-----~~-------------~~~~~~~~~~~~g~~v~~~ 238 (323)
T cd08241 207 RGVDVVYDPVG-----GD-------------VFEASLRSLAWGGRLLVIG 238 (323)
T ss_pred CCcEEEEECcc-----HH-------------HHHHHHHhhccCCEEEEEc
Confidence 35788765321 11 3666788899999877643
No 382
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=77.14 E-value=5.6 Score=35.10 Aligned_cols=64 Identities=17% Similarity=0.123 Sum_probs=44.8
Q ss_pred EEEEcCCCChHHHHHHhhcCCeE-EEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCC-CCCeeEEEec
Q 042544 104 VLDVGCGIGGPLREIAQFSSTSV-TGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFP-DNSFDAVYAI 175 (305)
Q Consensus 104 vLDiGcG~G~~~~~l~~~~~~~v-~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~fD~v~~~ 175 (305)
|+|+-||.|.++.-+.+. +.++ .++|+++...+.-+.+.. . .++++|+.++... -..+|+++..
T Consensus 1 vidLF~G~GG~~~Gl~~a-G~~~~~a~e~~~~a~~ty~~N~~-----~--~~~~~Di~~~~~~~~~~~dvl~gg 66 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQA-GFKCVFASEIDKYAQKTYEANFG-----N--KVPFGDITKISPSDIPDFDILLGG 66 (315)
T ss_pred CEEEecCccHHHHHHHHc-CCeEEEEEeCCHHHHHHHHHhCC-----C--CCCccChhhhhhhhCCCcCEEEec
Confidence 689999999999888764 5555 579999999887776542 1 3456777765321 1247888864
No 383
>PRK13699 putative methylase; Provisional
Probab=76.79 E-value=1.5 Score=36.75 Aligned_cols=61 Identities=20% Similarity=0.313 Sum_probs=34.5
Q ss_pred EEEEcCCCCC--CCCCCCeeEEEeccccc----ccCChhhhhhcCCCC--CcccHHHHHHHHHhCCceEEE
Q 042544 153 NFVKADFMKM--PFPDNSFDAVYAIEATC----HAPDAAEIEIGDGLP--DIRSTRKCLEALKQAGFEVIW 215 (305)
Q Consensus 153 ~~~~~d~~~~--~~~~~~fD~v~~~~~l~----~~~~~~~~~~~~~~~--~~~~l~~~~~~L~~gG~~~i~ 215 (305)
+++++|..+. .++++++|+|+..--.. .-... ... ..... ....+.++.++|||||.+++.
T Consensus 3 ~l~~gD~le~l~~lpd~SVDLIiTDPPY~i~~~~~~~~-~~~-~~~~~ew~~~~l~E~~RVLKpgg~l~if 71 (227)
T PRK13699 3 RFILGNCIDVMARFPDNAVDFILTDPPYLVGFRDRQGR-TIA-GDKTDEWLQPACNEMYRVLKKDALMVSF 71 (227)
T ss_pred eEEechHHHHHHhCCccccceEEeCCCcccccccCCCc-ccc-cccHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 5677777653 47788999998753211 00000 000 00000 013688999999999988763
No 384
>PRK07063 short chain dehydrogenase; Provisional
Probab=76.55 E-value=19 Score=30.33 Aligned_cols=77 Identities=16% Similarity=0.064 Sum_probs=48.8
Q ss_pred CCCeEEEEcCCCChHHHHHHh---hcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCC-----C-----CC
Q 042544 100 SGQKVLDVGCGIGGPLREIAQ---FSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMP-----F-----PD 166 (305)
Q Consensus 100 ~~~~vLDiGcG~G~~~~~l~~---~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~-----~-----~~ 166 (305)
.++++|=.|++.| .+..+++ ..+++|+.++.++..++...+.+...+...++.++..|+.+.. + .-
T Consensus 6 ~~k~vlVtGas~g-IG~~~a~~l~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 84 (260)
T PRK07063 6 AGKVALVTGAAQG-IGAAIARAFAREGAAVALADLDAALAERAAAAIARDVAGARVLAVPADVTDAASVAAAVAAAEEAF 84 (260)
T ss_pred CCCEEEEECCCch-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhccCCceEEEEEccCCCHHHHHHHHHHHHHHh
Confidence 4578998887644 4444432 1378999999988877766665544222345788889987631 0 01
Q ss_pred CCeeEEEeccc
Q 042544 167 NSFDAVYAIEA 177 (305)
Q Consensus 167 ~~fD~v~~~~~ 177 (305)
+.+|.++.+..
T Consensus 85 g~id~li~~ag 95 (260)
T PRK07063 85 GPLDVLVNNAG 95 (260)
T ss_pred CCCcEEEECCC
Confidence 46788876544
No 385
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=76.50 E-value=9.3 Score=27.74 Aligned_cols=59 Identities=20% Similarity=0.168 Sum_probs=39.8
Q ss_pred CCCChHHHHHHhh--cC-CeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCC----CCCCCeeEEEec
Q 042544 109 CGIGGPLREIAQF--SS-TSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMP----FPDNSFDAVYAI 175 (305)
Q Consensus 109 cG~G~~~~~l~~~--~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~fD~v~~~ 175 (305)
||.|..+..+++. .+ ..|+.+|.++..++.+++. .+.++.+|..+.. ..-+..|.|++.
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~--------~~~~i~gd~~~~~~l~~a~i~~a~~vv~~ 69 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREE--------GVEVIYGDATDPEVLERAGIEKADAVVIL 69 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHT--------TSEEEES-TTSHHHHHHTTGGCESEEEEE
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhc--------ccccccccchhhhHHhhcCccccCEEEEc
Confidence 5667788887742 23 4899999999998877652 3779999998732 222457777654
No 386
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=75.99 E-value=18 Score=32.33 Aligned_cols=96 Identities=22% Similarity=0.236 Sum_probs=54.2
Q ss_pred CCCCCeEEEEcCC-CChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEE-cCCCCCCCCCCCeeEEEec
Q 042544 98 LKSGQKVLDVGCG-IGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVK-ADFMKMPFPDNSFDAVYAI 175 (305)
Q Consensus 98 ~~~~~~vLDiGcG-~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~-~d~~~~~~~~~~fD~v~~~ 175 (305)
..++.+||=.|+| .|..+..+++..+.++++++.++.....+.+. .|.. .++. .+...+.-....+|+|+-.
T Consensus 178 ~~~g~~vlV~G~G~vG~~av~~Ak~~G~~vi~~~~~~~~~~~~~~~---~Ga~---~~i~~~~~~~~~~~~~~~D~vid~ 251 (357)
T PLN02514 178 KQSGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSDKKREEALEH---LGAD---DYLVSSDAAEMQEAADSLDYIIDT 251 (357)
T ss_pred CCCCCeEEEEcccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHh---cCCc---EEecCCChHHHHHhcCCCcEEEEC
Confidence 3578888888764 45555666665678899998887665544332 2321 1111 1100010001246777632
Q ss_pred ccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 176 EATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 176 ~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
- .... .+..+.+.|+++|.++...
T Consensus 252 ~-----g~~~------------~~~~~~~~l~~~G~iv~~G 275 (357)
T PLN02514 252 V-----PVFH------------PLEPYLSLLKLDGKLILMG 275 (357)
T ss_pred C-----CchH------------HHHHHHHHhccCCEEEEEC
Confidence 1 1111 4777889999999887754
No 387
>KOG2782 consensus Putative SAM dependent methyltransferases [General function prediction only]
Probab=75.84 E-value=2 Score=35.36 Aligned_cols=82 Identities=17% Similarity=0.148 Sum_probs=55.4
Q ss_pred HHHcCCCCCCeEEEEcCCCChHHHHHH-hhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCC-------C
Q 042544 93 ALQLGLKSGQKVLDVGCGIGGPLREIA-QFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMP-------F 164 (305)
Q Consensus 93 ~~~~~~~~~~~vLDiGcG~G~~~~~l~-~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~-------~ 164 (305)
...+.+-++...+|+--|.|..+..+. +.+..+++++|.+|.+...|+-..... ..+.+..+.+.+..++ .
T Consensus 36 l~~lspv~g~sf~DmTfGagGHt~~ilqk~se~k~yalDrDP~A~~La~~~s~el-~~~~l~a~Lg~Fs~~~~l~~~~gl 114 (303)
T KOG2782|consen 36 LDILSPVRGRSFVDMTFGAGGHTSSILQKHSELKNYALDRDPVARKLAHFHSDEL-MHPTLKAVLGNFSYIKSLIADTGL 114 (303)
T ss_pred HHHcCCCCCceEEEEeccCCcchHHHHHhCcHhhhhhhccChHHHHHHHHhhHhh-cchhHHHHHhhhHHHHHHHHHhCC
Confidence 345667788999999999999999988 456789999999998888777655321 1222333333333221 3
Q ss_pred CCCCeeEEEec
Q 042544 165 PDNSFDAVYAI 175 (305)
Q Consensus 165 ~~~~fD~v~~~ 175 (305)
.+.++|-|+.-
T Consensus 115 ~~~~vDGiLmD 125 (303)
T KOG2782|consen 115 LDVGVDGILMD 125 (303)
T ss_pred CcCCcceEEee
Confidence 45677777653
No 388
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=75.60 E-value=17 Score=34.64 Aligned_cols=84 Identities=19% Similarity=0.179 Sum_probs=62.0
Q ss_pred CCCeEEEEcCCCChHHHHHHhh----cCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCC-----CCCCCee
Q 042544 100 SGQKVLDVGCGIGGPLREIAQF----SSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMP-----FPDNSFD 170 (305)
Q Consensus 100 ~~~~vLDiGcG~G~~~~~l~~~----~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~-----~~~~~fD 170 (305)
.|++||=- .|+|..+..+.++ ...+++-+|.++..+-.....+...-...++.+..+|+.+.. +.+-+.|
T Consensus 249 ~gK~vLVT-GagGSiGsel~~qil~~~p~~i~l~~~~E~~~~~i~~el~~~~~~~~~~~~igdVrD~~~~~~~~~~~kvd 327 (588)
T COG1086 249 TGKTVLVT-GGGGSIGSELCRQILKFNPKEIILFSRDEYKLYLIDMELREKFPELKLRFYIGDVRDRDRVERAMEGHKVD 327 (588)
T ss_pred CCCEEEEe-CCCCcHHHHHHHHHHhcCCCEEEEecCchHHHHHHHHHHHhhCCCcceEEEecccccHHHHHHHHhcCCCc
Confidence 46788854 5668888777643 347999999999888777766655322457889999998732 4445689
Q ss_pred EEEecccccccCCh
Q 042544 171 AVYAIEATCHAPDA 184 (305)
Q Consensus 171 ~v~~~~~l~~~~~~ 184 (305)
.|+-..++.|+|--
T Consensus 328 ~VfHAAA~KHVPl~ 341 (588)
T COG1086 328 IVFHAAALKHVPLV 341 (588)
T ss_pred eEEEhhhhccCcch
Confidence 99998899999854
No 389
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=75.31 E-value=8.7 Score=34.10 Aligned_cols=70 Identities=16% Similarity=0.097 Sum_probs=48.6
Q ss_pred CCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCC---CCCCeeEEEecc
Q 042544 101 GQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPF---PDNSFDAVYAIE 176 (305)
Q Consensus 101 ~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~---~~~~fD~v~~~~ 176 (305)
..+++|+-||.|.+..-+....---+.++|+++..++.-+.+... ..++..|...... ....+|+++...
T Consensus 3 ~~~~idLFsG~GG~~lGf~~agf~~~~a~Eid~~a~~ty~~n~~~------~~~~~~di~~~~~~~~~~~~~DvligGp 75 (328)
T COG0270 3 KMKVIDLFAGIGGLSLGFEEAGFEIVFANEIDPPAVATYKANFPH------GDIILGDIKELDGEALRKSDVDVLIGGP 75 (328)
T ss_pred CceEEeeccCCchHHHHHHhcCCeEEEEEecCHHHHHHHHHhCCC------CceeechHhhcChhhccccCCCEEEeCC
Confidence 368999999999999888764224567899999998876665421 4566677765332 111689998744
No 390
>PRK10083 putative oxidoreductase; Provisional
Probab=75.04 E-value=17 Score=32.04 Aligned_cols=101 Identities=13% Similarity=0.088 Sum_probs=55.0
Q ss_pred HcCCCCCCeEEEEcCC-CChHHHHHHhh-cCC-eEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCC-CCCCCCCee
Q 042544 95 QLGLKSGQKVLDVGCG-IGGPLREIAQF-SST-SVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMK-MPFPDNSFD 170 (305)
Q Consensus 95 ~~~~~~~~~vLDiGcG-~G~~~~~l~~~-~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~fD 170 (305)
...+.++.+||=.|+| .|..+..+++. .+. .++++|.++...+.+++. |...-+.....+... +.-....+|
T Consensus 155 ~~~~~~g~~vlI~g~g~vG~~~~~~a~~~~G~~~v~~~~~~~~~~~~~~~~----Ga~~~i~~~~~~~~~~~~~~g~~~d 230 (339)
T PRK10083 155 RTGPTEQDVALIYGAGPVGLTIVQVLKGVYNVKAVIVADRIDERLALAKES----GADWVINNAQEPLGEALEEKGIKPT 230 (339)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHh----CCcEEecCccccHHHHHhcCCCCCC
Confidence 4567788899989865 23344445543 365 588899998888776653 321111111111111 110111245
Q ss_pred EEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 171 AVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 171 ~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
+|+... .... .+.+..+.|+++|.++...
T Consensus 231 ~vid~~-----g~~~------------~~~~~~~~l~~~G~~v~~g 259 (339)
T PRK10083 231 LIIDAA-----CHPS------------ILEEAVTLASPAARIVLMG 259 (339)
T ss_pred EEEECC-----CCHH------------HHHHHHHHhhcCCEEEEEc
Confidence 665321 1111 4788899999999988753
No 391
>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase. Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me
Probab=74.62 E-value=13 Score=33.28 Aligned_cols=98 Identities=17% Similarity=0.269 Sum_probs=59.3
Q ss_pred HcCCCCCCeEEEEcCC-CChHHHHHHhhcCCe-EEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCC-----C-CCC
Q 042544 95 QLGLKSGQKVLDVGCG-IGGPLREIAQFSSTS-VTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKM-----P-FPD 166 (305)
Q Consensus 95 ~~~~~~~~~vLDiGcG-~G~~~~~l~~~~~~~-v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~-----~-~~~ 166 (305)
...+.++.+||-.|+| .|..+..+++..+.. |++++.++...+.+++ .+.. .++..+-..+ . .+.
T Consensus 177 ~~~~~~g~~vLI~g~g~vG~a~i~lak~~G~~~Vi~~~~~~~~~~~~~~----~g~~---~vv~~~~~~~~~~l~~~~~~ 249 (363)
T cd08279 177 TARVRPGDTVAVIGCGGVGLNAIQGARIAGASRIIAVDPVPEKLELARR----FGAT---HTVNASEDDAVEAVRDLTDG 249 (363)
T ss_pred ccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHH----hCCe---EEeCCCCccHHHHHHHHcCC
Confidence 3566788899988875 455666677555775 9999998888776643 2321 1221111110 0 123
Q ss_pred CCeeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 167 NSFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 167 ~~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
..+|+++..-. .. . .+..+.+.|+++|.++...
T Consensus 250 ~~vd~vld~~~-----~~-~-----------~~~~~~~~l~~~G~~v~~g 282 (363)
T cd08279 250 RGADYAFEAVG-----RA-A-----------TIRQALAMTRKGGTAVVVG 282 (363)
T ss_pred CCCCEEEEcCC-----Ch-H-----------HHHHHHHHhhcCCeEEEEe
Confidence 45888874321 11 1 4788899999999887653
No 392
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=74.13 E-value=12 Score=27.61 Aligned_cols=61 Identities=25% Similarity=0.287 Sum_probs=40.8
Q ss_pred CeEEEEcCCCCh-HHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCC-CCCeeEEEec
Q 042544 102 QKVLDVGCGIGG-PLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFP-DNSFDAVYAI 175 (305)
Q Consensus 102 ~~vLDiGcG~G~-~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~fD~v~~~ 175 (305)
.+|+|+|-|-=. .+..|+++ +..|+++|+.+.. + +..++++..|+.+.... =...|+|++.
T Consensus 15 gkVvEVGiG~~~~VA~~L~e~-g~dv~atDI~~~~---a---------~~g~~~v~DDitnP~~~iY~~A~lIYSi 77 (129)
T COG1255 15 GKVVEVGIGFFLDVAKRLAER-GFDVLATDINEKT---A---------PEGLRFVVDDITNPNISIYEGADLIYSI 77 (129)
T ss_pred CcEEEEccchHHHHHHHHHHc-CCcEEEEeccccc---C---------cccceEEEccCCCccHHHhhCccceeec
Confidence 499999988533 33444454 7999999998761 1 24688999999873211 1336888764
No 393
>COG0863 DNA modification methylase [DNA replication, recombination, and repair]
Probab=74.10 E-value=17 Score=31.39 Aligned_cols=49 Identities=16% Similarity=0.019 Sum_probs=41.8
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhc
Q 042544 97 GLKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFA 146 (305)
Q Consensus 97 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~ 146 (305)
...++..|||.=+|+|..+..... .+...+|+|+++.-++.+.+++...
T Consensus 219 ~s~~~diVlDpf~GsGtt~~aa~~-~~r~~ig~e~~~~y~~~~~~r~~~~ 267 (302)
T COG0863 219 YSFPGDIVLDPFAGSGTTGIAAKN-LGRRFIGIEINPEYVEVALKRLQEG 267 (302)
T ss_pred cCCCCCEEeecCCCCChHHHHHHH-cCCceEEEecCHHHHHHHHHHHHhh
Confidence 456889999999999988877665 4889999999999999999987654
No 394
>TIGR00692 tdh L-threonine 3-dehydrogenase. E. coli His-90 modulates substrate specificity and is believed part of the active site.
Probab=74.00 E-value=21 Score=31.46 Aligned_cols=99 Identities=25% Similarity=0.328 Sum_probs=55.8
Q ss_pred CCCCCCeEEEEcCC-CChHHHHHHhhcCCe-EEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCC-C--CCCCCCeeE
Q 042544 97 GLKSGQKVLDVGCG-IGGPLREIAQFSSTS-VTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMK-M--PFPDNSFDA 171 (305)
Q Consensus 97 ~~~~~~~vLDiGcG-~G~~~~~l~~~~~~~-v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~-~--~~~~~~fD~ 171 (305)
...++.+||-.|+| .|..+..+++..+.+ |++++-++...+.+++. +...-+.....++.+ + ..+...+|+
T Consensus 158 ~~~~g~~vlI~~~g~vg~~a~~la~~~G~~~v~~~~~~~~~~~~~~~~----g~~~~v~~~~~~~~~~l~~~~~~~~~d~ 233 (340)
T TIGR00692 158 GPISGKSVLVTGAGPIGLMAIAVAKASGAYPVIVSDPNEYRLELAKKM----GATYVVNPFKEDVVKEVADLTDGEGVDV 233 (340)
T ss_pred cCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHh----CCcEEEcccccCHHHHHHHhcCCCCCCE
Confidence 34577888877664 345555566555776 88998888777665542 321001111111100 0 012345888
Q ss_pred EEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 172 VYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 172 v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
|+.... .. . .+.++.+.|+++|.++...
T Consensus 234 vld~~g-----~~-~-----------~~~~~~~~l~~~g~~v~~g 261 (340)
T TIGR00692 234 FLEMSG-----AP-K-----------ALEQGLQAVTPGGRVSLLG 261 (340)
T ss_pred EEECCC-----CH-H-----------HHHHHHHhhcCCCEEEEEc
Confidence 875311 11 1 4778899999999887653
No 395
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=73.97 E-value=39 Score=30.80 Aligned_cols=109 Identities=15% Similarity=0.153 Sum_probs=58.7
Q ss_pred cCCCCCCeEEEEcCC-CChHHHHHHhhcCCe-EEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEc---CCCC-C-C-CCCC
Q 042544 96 LGLKSGQKVLDVGCG-IGGPLREIAQFSSTS-VTGLNNNEYQITRGKELNRFAGVDKTCNFVKA---DFMK-M-P-FPDN 167 (305)
Q Consensus 96 ~~~~~~~~vLDiGcG-~G~~~~~l~~~~~~~-v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~---d~~~-~-~-~~~~ 167 (305)
..+.++.+||=.|+| .|..+..+++..+.+ ++.+|.++..++.+++. |.. .+... +... + . ....
T Consensus 181 ~~~~~g~~VlV~G~G~iG~~aiqlAk~~Ga~~vi~~d~~~~r~~~a~~~----Ga~---~v~~~~~~~~~~~v~~~~~~~ 253 (393)
T TIGR02819 181 AGVGPGSTVYIAGAGPVGLAAAASAQLLGAAVVIVGDLNPARLAQARSF----GCE---TVDLSKDATLPEQIEQILGEP 253 (393)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHc----CCe---EEecCCcccHHHHHHHHcCCC
Confidence 456788888877775 344555566545665 56678888888877663 321 11111 1111 0 0 1123
Q ss_pred CeeEEEecccccc---cCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEec
Q 042544 168 SFDAVYAIEATCH---APDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEK 217 (305)
Q Consensus 168 ~fD~v~~~~~l~~---~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~~ 217 (305)
.+|+|+-.-.... ..+.... .+...+++..+++++||.+++.-.
T Consensus 254 g~Dvvid~~G~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~G~i~~~G~ 300 (393)
T TIGR02819 254 EVDCAVDCVGFEARGHGHDGKKE------APATVLNSLMEVTRVGGAIGIPGL 300 (393)
T ss_pred CCcEEEECCCCcccccccccccc------chHHHHHHHHHHhhCCCEEEEeee
Confidence 5888874322110 0000000 000158888999999999988653
No 396
>cd05281 TDH Threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=73.82 E-value=52 Score=28.95 Aligned_cols=98 Identities=26% Similarity=0.346 Sum_probs=55.5
Q ss_pred CCCCCCeEEEEcCCC-ChHHHHHHhhcCC-eEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCC---CCCCCCCCCeeE
Q 042544 97 GLKSGQKVLDVGCGI-GGPLREIAQFSST-SVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADF---MKMPFPDNSFDA 171 (305)
Q Consensus 97 ~~~~~~~vLDiGcG~-G~~~~~l~~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~---~~~~~~~~~fD~ 171 (305)
...++.+||-.|+|. |..+..+++..+. .|++++-++...+.+++. +...-+.....+. ... .+.+.+|+
T Consensus 160 ~~~~g~~vlV~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~----g~~~~~~~~~~~~~~~~~~-~~~~~vd~ 234 (341)
T cd05281 160 GDVSGKSVLITGCGPIGLMAIAVAKAAGASLVIASDPNPYRLELAKKM----GADVVINPREEDVVEVKSV-TDGTGVDV 234 (341)
T ss_pred cCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHh----CcceeeCcccccHHHHHHH-cCCCCCCE
Confidence 345778888777653 5566666755577 788988777766655542 3211011111111 111 12345888
Q ss_pred EEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 172 VYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 172 v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
|+..-. ... ...++.+.|+++|.++...
T Consensus 235 vld~~g-----~~~------------~~~~~~~~l~~~G~~v~~g 262 (341)
T cd05281 235 VLEMSG-----NPK------------AIEQGLKALTPGGRVSILG 262 (341)
T ss_pred EEECCC-----CHH------------HHHHHHHHhccCCEEEEEc
Confidence 874321 111 3677889999999987653
No 397
>cd05289 MDR_like_2 alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases. Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts et
Probab=73.46 E-value=41 Score=28.69 Aligned_cols=94 Identities=22% Similarity=0.251 Sum_probs=54.8
Q ss_pred CCCCCCeEEEEcC--CCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCC--CCCCCCeeEE
Q 042544 97 GLKSGQKVLDVGC--GIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKM--PFPDNSFDAV 172 (305)
Q Consensus 97 ~~~~~~~vLDiGc--G~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~fD~v 172 (305)
.+.++.+||=.|+ +.|..+..+++..+.+|+.++.++ ..+.+++ .+.. .++...-... ......+|++
T Consensus 141 ~~~~~~~vlv~g~~g~~g~~~~~~a~~~g~~v~~~~~~~-~~~~~~~----~g~~---~~~~~~~~~~~~~~~~~~~d~v 212 (309)
T cd05289 141 GLKAGQTVLIHGAAGGVGSFAVQLAKARGARVIATASAA-NADFLRS----LGAD---EVIDYTKGDFERAAAPGGVDAV 212 (309)
T ss_pred CCCCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEecch-hHHHHHH----cCCC---EEEeCCCCchhhccCCCCceEE
Confidence 3677889998886 355566666655688999888766 5554432 2321 1222111111 1123457887
Q ss_pred EecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 173 YAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 173 ~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
+... ... ....+.+.|+++|.++...
T Consensus 213 ~~~~-----~~~-------------~~~~~~~~l~~~g~~v~~g 238 (309)
T cd05289 213 LDTV-----GGE-------------TLARSLALVKPGGRLVSIA 238 (309)
T ss_pred EECC-----chH-------------HHHHHHHHHhcCcEEEEEc
Confidence 7431 111 3677889999999887653
No 398
>cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=73.42 E-value=34 Score=30.15 Aligned_cols=95 Identities=20% Similarity=0.270 Sum_probs=56.2
Q ss_pred HcCCCCCCeEEEEcC--CCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCC---C-CCCCCC
Q 042544 95 QLGLKSGQKVLDVGC--GIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMK---M-PFPDNS 168 (305)
Q Consensus 95 ~~~~~~~~~vLDiGc--G~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~---~-~~~~~~ 168 (305)
...+.++.+||=.|+ +.|..+..+++..++++++++.+. ..+.+++ .+.. .+...+-.. . ......
T Consensus 172 ~~~~~~g~~vlI~g~~g~ig~~~~~~a~~~g~~vi~~~~~~-~~~~~~~----~g~~---~~~~~~~~~~~~~~~~~~~~ 243 (350)
T cd08274 172 RAGVGAGETVLVTGASGGVGSALVQLAKRRGAIVIAVAGAA-KEEAVRA----LGAD---TVILRDAPLLADAKALGGEP 243 (350)
T ss_pred hcCCCCCCEEEEEcCCcHHHHHHHHHHHhcCCEEEEEeCch-hhHHHHh----cCCe---EEEeCCCccHHHHHhhCCCC
Confidence 456778899999987 355566666766688999988654 4444432 3321 111111000 0 012345
Q ss_pred eeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEE
Q 042544 169 FDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIW 215 (305)
Q Consensus 169 fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~ 215 (305)
+|+|+.... .. .+..+.+.|+++|.++..
T Consensus 244 ~d~vi~~~g-----~~-------------~~~~~~~~l~~~G~~v~~ 272 (350)
T cd08274 244 VDVVADVVG-----GP-------------LFPDLLRLLRPGGRYVTA 272 (350)
T ss_pred CcEEEecCC-----HH-------------HHHHHHHHhccCCEEEEe
Confidence 888874322 11 367788999999988754
No 399
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=73.20 E-value=9 Score=33.48 Aligned_cols=41 Identities=24% Similarity=0.244 Sum_probs=28.0
Q ss_pred CCCeEEEEcCCC-ChHHHHHHhhcCCeEEEEcCCHHHHHHHH
Q 042544 100 SGQKVLDVGCGI-GGPLREIAQFSSTSVTGLNNNEYQITRGK 140 (305)
Q Consensus 100 ~~~~vLDiGcG~-G~~~~~l~~~~~~~v~gvD~s~~~l~~a~ 140 (305)
.+.+|+=+|+|. |......+...+++|+.+|.++...+.++
T Consensus 151 ~g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~~~~~~~~ 192 (296)
T PRK08306 151 HGSNVLVLGFGRTGMTLARTLKALGANVTVGARKSAHLARIT 192 (296)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence 578999999974 22222333345889999999987655543
No 400
>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=72.82 E-value=36 Score=29.32 Aligned_cols=95 Identities=23% Similarity=0.313 Sum_probs=59.6
Q ss_pred cCCCCCCeEEEEcC--CCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEc--CCCC--CCCCCCCe
Q 042544 96 LGLKSGQKVLDVGC--GIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKA--DFMK--MPFPDNSF 169 (305)
Q Consensus 96 ~~~~~~~~vLDiGc--G~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~--d~~~--~~~~~~~f 169 (305)
..+.++.+||=.|+ +.|..+..+++..+.+|+++..++...+.+++ .|.. .++.. +... ... ...+
T Consensus 138 ~~~~~g~~vlV~ga~g~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~----~g~~---~~~~~~~~~~~~i~~~-~~~~ 209 (320)
T cd08243 138 LGLQPGDTLLIRGGTSSVGLAALKLAKALGATVTATTRSPERAALLKE----LGAD---EVVIDDGAIAEQLRAA-PGGF 209 (320)
T ss_pred cCCCCCCEEEEEcCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHh----cCCc---EEEecCccHHHHHHHh-CCCc
Confidence 45677889998886 46667777776668999999999877666543 2321 11111 1100 012 3458
Q ss_pred eEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 170 DAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 170 D~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
|+++.... .. .+.++.+.|+++|.++...
T Consensus 210 d~vl~~~~-----~~-------------~~~~~~~~l~~~g~~v~~g 238 (320)
T cd08243 210 DKVLELVG-----TA-------------TLKDSLRHLRPGGIVCMTG 238 (320)
T ss_pred eEEEECCC-----hH-------------HHHHHHHHhccCCEEEEEc
Confidence 88874321 11 3778889999999987653
No 401
>PRK09548 PTS system ascorbate-specific transporter subunits IICB; Provisional
Probab=72.49 E-value=19 Score=34.54 Aligned_cols=61 Identities=11% Similarity=0.082 Sum_probs=43.0
Q ss_pred CCCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEEeccc
Q 042544 98 LKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIEA 177 (305)
Q Consensus 98 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~ 177 (305)
..+..+|| +.||+|.-+..+.+. ..++.+++.|++ +++.+.|+.+.+-..+.+|+|++...
T Consensus 503 ~~k~mKIL-vaCGsGiGTStmva~----------------kIkk~Lke~GI~--veV~~~~Vsev~s~~~~aDIIVtt~~ 563 (602)
T PRK09548 503 GGKPVRIL-AVCGQGQGSSMMMKM----------------KIKKYLDKRGIP--IIMDSCAVNDYKGKLETIDIIVCSKH 563 (602)
T ss_pred cCcccEEE-EECCCCchHHHHHHH----------------HHHHHHHHcCCC--eEEEEechHhCcccCCCCCEEEEccc
Confidence 34556888 779999877766643 345556666774 67889998887654566899988654
No 402
>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall
Probab=72.26 E-value=15 Score=32.86 Aligned_cols=101 Identities=16% Similarity=0.281 Sum_probs=57.1
Q ss_pred HcCCCCCCeEEEEcCC-CChHHHHHHhhcCC-eEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEc--CCCC-C-CCCCCC
Q 042544 95 QLGLKSGQKVLDVGCG-IGGPLREIAQFSST-SVTGLNNNEYQITRGKELNRFAGVDKTCNFVKA--DFMK-M-PFPDNS 168 (305)
Q Consensus 95 ~~~~~~~~~vLDiGcG-~G~~~~~l~~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~--d~~~-~-~~~~~~ 168 (305)
...+.++.+||=.|+| .|..+..+++..+. .|++++.++...+.+++. |...-+..... +... + ....+.
T Consensus 178 ~~~~~~g~~vlI~g~g~vG~~a~~~a~~~G~~~v~~~~~~~~~~~~~~~~----g~~~~v~~~~~~~~~~~~l~~~~~~~ 253 (365)
T cd05279 178 TAKVTPGSTCAVFGLGGVGLSVIMGCKAAGASRIIAVDINKDKFEKAKQL----GATECINPRDQDKPIVEVLTEMTDGG 253 (365)
T ss_pred ccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHh----CCCeecccccccchHHHHHHHHhCCC
Confidence 4567788899988764 23344445554566 488999888888777442 32211111111 1100 0 011245
Q ss_pred eeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHH-hCCceEEEe
Q 042544 169 FDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALK-QAGFEVIWE 216 (305)
Q Consensus 169 fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~-~gG~~~i~~ 216 (305)
+|+|+... .... .+....+.|+ ++|.++...
T Consensus 254 ~d~vid~~-----g~~~------------~~~~~~~~l~~~~G~~v~~g 285 (365)
T cd05279 254 VDYAFEVI-----GSAD------------TLKQALDATRLGGGTSVVVG 285 (365)
T ss_pred CcEEEECC-----CCHH------------HHHHHHHHhccCCCEEEEEe
Confidence 88887431 1111 4777889999 999888654
No 403
>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like. This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (
Probab=72.22 E-value=22 Score=31.38 Aligned_cols=99 Identities=22% Similarity=0.254 Sum_probs=56.4
Q ss_pred HcCCCCCCeEEEEcCC-CChHHHHHHhhcC-CeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCC----CCCCCCCCC
Q 042544 95 QLGLKSGQKVLDVGCG-IGGPLREIAQFSS-TSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADF----MKMPFPDNS 168 (305)
Q Consensus 95 ~~~~~~~~~vLDiGcG-~G~~~~~l~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~----~~~~~~~~~ 168 (305)
...+.++.+||=.|+| .|..+..+++..+ .+|++++.++...+.+++ .+...-+.....+. ..+ .+...
T Consensus 161 ~~~~~~g~~vlI~g~g~~g~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~----~g~~~~v~~~~~~~~~~i~~~-~~~~~ 235 (345)
T cd08286 161 NGKVKPGDTVAIVGAGPVGLAALLTAQLYSPSKIIMVDLDDNRLEVAKK----LGATHTVNSAKGDAIEQVLEL-TDGRG 235 (345)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----hCCCceeccccccHHHHHHHH-hCCCC
Confidence 3456778888877764 2334444555556 789999998877766654 23221111111111 011 12345
Q ss_pred eeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEE
Q 042544 169 FDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIW 215 (305)
Q Consensus 169 fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~ 215 (305)
+|+|+..- .... .+..+.+.|+++|.++..
T Consensus 236 ~d~vld~~-----g~~~------------~~~~~~~~l~~~g~~v~~ 265 (345)
T cd08286 236 VDVVIEAV-----GIPA------------TFELCQELVAPGGHIANV 265 (345)
T ss_pred CCEEEECC-----CCHH------------HHHHHHHhccCCcEEEEe
Confidence 88887432 2111 377788999999998764
No 404
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=72.14 E-value=15 Score=33.20 Aligned_cols=94 Identities=20% Similarity=0.183 Sum_probs=53.1
Q ss_pred CCCCeEEEEcCC-CChHHHHHHhhcCCeEEEEcCCHHH-HHHHHHHHHhcCCCCCeEEEEc-CCCCCCCCCCCeeEEEec
Q 042544 99 KSGQKVLDVGCG-IGGPLREIAQFSSTSVTGLNNNEYQ-ITRGKELNRFAGVDKTCNFVKA-DFMKMPFPDNSFDAVYAI 175 (305)
Q Consensus 99 ~~~~~vLDiGcG-~G~~~~~l~~~~~~~v~gvD~s~~~-l~~a~~~~~~~~~~~~~~~~~~-d~~~~~~~~~~fD~v~~~ 175 (305)
.++.+||=.|+| .|..+..+++..+++|++++.++.. .+.+++ .|.. .++.. +...+.-..+.+|+|+-.
T Consensus 177 ~~g~~VlV~G~G~vG~~avq~Ak~~Ga~Vi~~~~~~~~~~~~a~~----lGa~---~~i~~~~~~~v~~~~~~~D~vid~ 249 (375)
T PLN02178 177 ESGKRLGVNGLGGLGHIAVKIGKAFGLRVTVISRSSEKEREAIDR----LGAD---SFLVTTDSQKMKEAVGTMDFIIDT 249 (375)
T ss_pred CCCCEEEEEcccHHHHHHHHHHHHcCCeEEEEeCChHHhHHHHHh----CCCc---EEEcCcCHHHHHHhhCCCcEEEEC
Confidence 478899988875 3445566666568899999987654 333322 3331 11110 100000001247877643
Q ss_pred ccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 176 EATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 176 ~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
- .... .+....+.|+++|.++...
T Consensus 250 ~-----G~~~------------~~~~~~~~l~~~G~iv~vG 273 (375)
T PLN02178 250 V-----SAEH------------ALLPLFSLLKVSGKLVALG 273 (375)
T ss_pred C-----CcHH------------HHHHHHHhhcCCCEEEEEc
Confidence 1 1111 3777889999999988754
No 405
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=71.84 E-value=13 Score=33.38 Aligned_cols=101 Identities=19% Similarity=0.273 Sum_probs=59.7
Q ss_pred HcCCCCCCeEEEEcCC-CChHHHHHHhhcCC-eEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEE--cCCCC-C-CCCCCC
Q 042544 95 QLGLKSGQKVLDVGCG-IGGPLREIAQFSST-SVTGLNNNEYQITRGKELNRFAGVDKTCNFVK--ADFMK-M-PFPDNS 168 (305)
Q Consensus 95 ~~~~~~~~~vLDiGcG-~G~~~~~l~~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~--~d~~~-~-~~~~~~ 168 (305)
...+.++.+||=.||| .|..+..+++..++ +|+++|.++..++.+++. |...-+.... .+... + ....+.
T Consensus 180 ~~~~~~g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~~~~a~~~----Ga~~~i~~~~~~~~~~~~v~~~~~~g 255 (368)
T TIGR02818 180 TAKVEEGDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINPAKFELAKKL----GATDCVNPNDYDKPIQEVIVEITDGG 255 (368)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHh----CCCeEEcccccchhHHHHHHHHhCCC
Confidence 4567789999999886 34556666765577 799999999988887553 3221111110 00000 0 011125
Q ss_pred eeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhC-CceEEEe
Q 042544 169 FDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQA-GFEVIWE 216 (305)
Q Consensus 169 fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~g-G~~~i~~ 216 (305)
+|+|+-.- ..+. .+....+.++++ |.+++..
T Consensus 256 ~d~vid~~-----G~~~------------~~~~~~~~~~~~~G~~v~~g 287 (368)
T TIGR02818 256 VDYSFECI-----GNVN------------VMRAALECCHKGWGESIIIG 287 (368)
T ss_pred CCEEEECC-----CCHH------------HHHHHHHHhhcCCCeEEEEe
Confidence 78776431 1111 477788899886 8877654
No 406
>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic
Probab=71.77 E-value=48 Score=29.18 Aligned_cols=97 Identities=21% Similarity=0.250 Sum_probs=56.3
Q ss_pred cCCCCCCeEEEEcCC-CChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCC-CCCCCCeeEEE
Q 042544 96 LGLKSGQKVLDVGCG-IGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKM-PFPDNSFDAVY 173 (305)
Q Consensus 96 ~~~~~~~~vLDiGcG-~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~fD~v~ 173 (305)
+.+.++.+||=.||| .|..+..+++..+.++++++.++...+.+++ .+.. .++...-... ....+.+|+|+
T Consensus 165 ~~~~~g~~vlV~g~g~vG~~~~~~a~~~G~~v~~~~~~~~~~~~~~~----~g~~---~vi~~~~~~~~~~~~~~~d~v~ 237 (337)
T cd05283 165 NGVGPGKRVGVVGIGGLGHLAVKFAKALGAEVTAFSRSPSKKEDALK----LGAD---EFIATKDPEAMKKAAGSLDLII 237 (337)
T ss_pred cCCCCCCEEEEECCcHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHH----cCCc---EEecCcchhhhhhccCCceEEE
Confidence 456778888877763 3444555555557899999999888776643 2221 1111110000 00134578887
Q ss_pred ecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 174 AIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 174 ~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
.... ... .+..+.+.|+++|.++...
T Consensus 238 ~~~g-----~~~------------~~~~~~~~l~~~G~~v~~g 263 (337)
T cd05283 238 DTVS-----ASH------------DLDPYLSLLKPGGTLVLVG 263 (337)
T ss_pred ECCC-----Ccc------------hHHHHHHHhcCCCEEEEEe
Confidence 4321 110 3677889999999887653
No 407
>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional
Probab=71.23 E-value=14 Score=26.07 Aligned_cols=16 Identities=31% Similarity=0.571 Sum_probs=11.2
Q ss_pred eEEEEcCCCChHHHHHH
Q 042544 103 KVLDVGCGIGGPLREIA 119 (305)
Q Consensus 103 ~vLDiGcG~G~~~~~l~ 119 (305)
+|| +-||+|.-+..++
T Consensus 4 kIL-vvCgsG~~TS~m~ 19 (94)
T PRK10310 4 KII-VACGGAVATSTMA 19 (94)
T ss_pred eEE-EECCCchhHHHHH
Confidence 466 6699998666664
No 408
>PRK07062 short chain dehydrogenase; Provisional
Probab=70.98 E-value=29 Score=29.28 Aligned_cols=77 Identities=12% Similarity=0.021 Sum_probs=47.8
Q ss_pred CCCeEEEEcCCCChHHHHHHh---hcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCC-C---------CC
Q 042544 100 SGQKVLDVGCGIGGPLREIAQ---FSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMP-F---------PD 166 (305)
Q Consensus 100 ~~~~vLDiGcG~G~~~~~l~~---~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~-~---------~~ 166 (305)
.+.++|=.|++.| .+..+++ ..+++|+.++.++..++.+.+.+.......++.++..|+.+.. . .-
T Consensus 7 ~~k~~lItGas~g-iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~ 85 (265)
T PRK07062 7 EGRVAVVTGGSSG-IGLATVELLLEAGASVAICGRDEERLASAEARLREKFPGARLLAARCDVLDEADVAAFAAAVEARF 85 (265)
T ss_pred CCCEEEEeCCCch-HHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEecCCCHHHHHHHHHHHHHhc
Confidence 4678888887655 3344432 1378999999998877766555443322235777888887631 0 11
Q ss_pred CCeeEEEeccc
Q 042544 167 NSFDAVYAIEA 177 (305)
Q Consensus 167 ~~fD~v~~~~~ 177 (305)
+..|.++.+-.
T Consensus 86 g~id~li~~Ag 96 (265)
T PRK07062 86 GGVDMLVNNAG 96 (265)
T ss_pred CCCCEEEECCC
Confidence 45788876544
No 409
>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty
Probab=70.42 E-value=20 Score=31.63 Aligned_cols=97 Identities=20% Similarity=0.222 Sum_probs=58.2
Q ss_pred HcCCCCCCeEEEEcCC-CChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCC-CCC-----CCCCC
Q 042544 95 QLGLKSGQKVLDVGCG-IGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADF-MKM-----PFPDN 167 (305)
Q Consensus 95 ~~~~~~~~~vLDiGcG-~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~-~~~-----~~~~~ 167 (305)
...+.++.+||=.||| .|..+..+++..+.+|++++.++...+.+++ .|.. .++...- ..+ ....+
T Consensus 160 ~~~~~~~~~vlV~g~g~vg~~~~~~a~~~G~~vi~~~~~~~~~~~~~~----~g~~---~~i~~~~~~~~~~~~~~~~~~ 232 (345)
T cd08260 160 QARVKPGEWVAVHGCGGVGLSAVMIASALGARVIAVDIDDDKLELARE----LGAV---ATVNASEVEDVAAAVRDLTGG 232 (345)
T ss_pred ccCCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHH----hCCC---EEEccccchhHHHHHHHHhCC
Confidence 3456778899988864 3445555665568899999999888777643 2321 1221111 110 01112
Q ss_pred CeeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEE
Q 042544 168 SFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIW 215 (305)
Q Consensus 168 ~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~ 215 (305)
.+|+++..- .... .+....+.|+++|.++..
T Consensus 233 ~~d~vi~~~-----g~~~------------~~~~~~~~l~~~g~~i~~ 263 (345)
T cd08260 233 GAHVSVDAL-----GIPE------------TCRNSVASLRKRGRHVQV 263 (345)
T ss_pred CCCEEEEcC-----CCHH------------HHHHHHHHhhcCCEEEEe
Confidence 688887541 1111 377788999999987764
No 410
>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu
Probab=70.31 E-value=48 Score=29.61 Aligned_cols=96 Identities=18% Similarity=0.301 Sum_probs=56.1
Q ss_pred CCCCCCeEEEEcCC-CChHHHHHHhhcCCe-EEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCC------CCCCCC
Q 042544 97 GLKSGQKVLDVGCG-IGGPLREIAQFSSTS-VTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKM------PFPDNS 168 (305)
Q Consensus 97 ~~~~~~~vLDiGcG-~G~~~~~l~~~~~~~-v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~------~~~~~~ 168 (305)
.+.++.+||=.|+| .|..+..+++..+.+ |++++.++...+.+++ .+.. .++..+-..+ ..+...
T Consensus 184 ~~~~g~~VlI~g~g~vG~~~~~lak~~G~~~vi~~~~s~~~~~~~~~----~g~~---~v~~~~~~~~~~~l~~~~~~~~ 256 (367)
T cd08263 184 DVRPGETVAVIGVGGVGSSAIQLAKAFGASPIIAVDVRDEKLAKAKE----LGAT---HTVNAAKEDAVAAIREITGGRG 256 (367)
T ss_pred cCCCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH----hCCc---eEecCCcccHHHHHHHHhCCCC
Confidence 44677888877654 444555566555666 9999998887776643 2221 1221111110 012355
Q ss_pred eeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 169 FDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 169 fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
+|+|+.. +.... .+..+.+.|+++|.++...
T Consensus 257 ~d~vld~-----vg~~~------------~~~~~~~~l~~~G~~v~~g 287 (367)
T cd08263 257 VDVVVEA-----LGKPE------------TFKLALDVVRDGGRAVVVG 287 (367)
T ss_pred CCEEEEe-----CCCHH------------HHHHHHHHHhcCCEEEEEc
Confidence 8888743 11111 3677889999999887653
No 411
>PF12242 Eno-Rase_NADH_b: NAD(P)H binding domain of trans-2-enoyl-CoA reductase; PDB: 3ZU5_A 3ZU3_A 3ZU4_A 3ZU2_A 3S8M_A.
Probab=69.72 E-value=23 Score=23.95 Aligned_cols=44 Identities=23% Similarity=0.326 Sum_probs=21.8
Q ss_pred HHHHHHHHcCCCCCCeEEEEcCCCCh-HHHHHH-hh-cCCeEEEEcC
Q 042544 88 HEHFLALQLGLKSGQKVLDVGCGIGG-PLREIA-QF-SSTSVTGLNN 131 (305)
Q Consensus 88 ~~~~l~~~~~~~~~~~vLDiGcG~G~-~~~~l~-~~-~~~~v~gvD~ 131 (305)
..+++...-.+...++||=|||-+|. ++..++ .+ .++..+||-.
T Consensus 26 qI~yvk~~~~~~GpK~VLViGaStGyGLAsRIa~aFg~gA~TiGV~f 72 (78)
T PF12242_consen 26 QIEYVKSQGKINGPKKVLVIGASTGYGLASRIAAAFGAGADTIGVSF 72 (78)
T ss_dssp HHHHHHHC---TS-SEEEEES-SSHHHHHHHHHHHHCC--EEEEEE-
T ss_pred HHHHHHhcCCCCCCceEEEEecCCcccHHHHHHHHhcCCCCEEEEee
Confidence 33444433344445799999999997 343344 32 3567777654
No 412
>PF02086 MethyltransfD12: D12 class N6 adenine-specific DNA methyltransferase; InterPro: IPR012327 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes []. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence. It has been shown [, , , ] that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A []. The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements []. According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine; PDB: 1Q0T_B 1YFJ_B 1Q0S_A 1YFL_B 1YF3_B 2DPM_A 2ORE_F 2G1P_B.
Probab=69.48 E-value=9.7 Score=32.23 Aligned_cols=54 Identities=13% Similarity=0.054 Sum_probs=35.5
Q ss_pred HHHHHHcCCCCCCeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHH
Q 042544 90 HFLALQLGLKSGQKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNR 144 (305)
Q Consensus 90 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~ 144 (305)
.++...++..+..+++|.=||+|.++..+.. .+..|+.-|+++..+...+..++
T Consensus 10 ~~I~~~ip~~~~~~~vepF~G~g~V~~~~~~-~~~~vi~ND~~~~l~~~~~~~l~ 63 (260)
T PF02086_consen 10 KWIIELIPKNKHKTYVEPFAGGGSVFLNLKQ-PGKRVIINDINPDLINFWKAVLK 63 (260)
T ss_dssp HHHHHHS-S-S-SEEEETT-TTSHHHHCC----SSEEEEEES-HHHHHHHHHHHH
T ss_pred HHHHHHcCCCCCCEEEEEecchhHHHHHhcc-cccceeeeechHHHHHHHHHHHh
Confidence 3444444432578999999999999988865 47899999999988777664443
No 413
>PRK07326 short chain dehydrogenase; Provisional
Probab=69.41 E-value=33 Score=28.26 Aligned_cols=74 Identities=15% Similarity=0.030 Sum_probs=46.8
Q ss_pred CCCeEEEEcCCCChHHHHHHhh---cCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCC-----CC-----C
Q 042544 100 SGQKVLDVGCGIGGPLREIAQF---SSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMP-----FP-----D 166 (305)
Q Consensus 100 ~~~~vLDiGcG~G~~~~~l~~~---~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~-----~~-----~ 166 (305)
.+.+||=+|+ +|..+..+++. .+.+|++++.++..+....+.+... .++.++.+|+.+.. +. -
T Consensus 5 ~~~~ilItGa-tg~iG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~---~~~~~~~~D~~~~~~~~~~~~~~~~~~ 80 (237)
T PRK07326 5 KGKVALITGG-SKGIGFAIAEALLAEGYKVAITARDQKELEEAAAELNNK---GNVLGLAADVRDEADVQRAVDAIVAAF 80 (237)
T ss_pred CCCEEEEECC-CCcHHHHHHHHHHHCCCEEEEeeCCHHHHHHHHHHHhcc---CcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 3568888884 56666666532 3789999999887666554443321 35788889987521 10 1
Q ss_pred CCeeEEEeccc
Q 042544 167 NSFDAVYAIEA 177 (305)
Q Consensus 167 ~~fD~v~~~~~ 177 (305)
+.+|.|+....
T Consensus 81 ~~~d~vi~~ag 91 (237)
T PRK07326 81 GGLDVLIANAG 91 (237)
T ss_pred CCCCEEEECCC
Confidence 35788886543
No 414
>PRK05854 short chain dehydrogenase; Provisional
Probab=68.97 E-value=35 Score=29.86 Aligned_cols=78 Identities=14% Similarity=0.080 Sum_probs=48.9
Q ss_pred CCCeEEEEcCCCChHHHHHHh---hcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCC----C------CC
Q 042544 100 SGQKVLDVGCGIGGPLREIAQ---FSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMP----F------PD 166 (305)
Q Consensus 100 ~~~~vLDiGcG~G~~~~~l~~---~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~----~------~~ 166 (305)
.+.++|=.|++.| .+..+++ ..+++|+.+..+....+.+.+.+.......++.++..|+.+.. + ..
T Consensus 13 ~gk~~lITGas~G-IG~~~a~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~sv~~~~~~~~~~~ 91 (313)
T PRK05854 13 SGKRAVVTGASDG-LGLGLARRLAAAGAEVILPVRNRAKGEAAVAAIRTAVPDAKLSLRALDLSSLASVAALGEQLRAEG 91 (313)
T ss_pred CCCEEEEeCCCCh-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEecCCCHHHHHHHHHHHHHhC
Confidence 4678887777654 4444442 1378999999988776666555543322235788999987632 0 12
Q ss_pred CCeeEEEecccc
Q 042544 167 NSFDAVYAIEAT 178 (305)
Q Consensus 167 ~~fD~v~~~~~l 178 (305)
+..|+++.+-..
T Consensus 92 ~~iD~li~nAG~ 103 (313)
T PRK05854 92 RPIHLLINNAGV 103 (313)
T ss_pred CCccEEEECCcc
Confidence 468988876543
No 415
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=68.66 E-value=25 Score=30.56 Aligned_cols=74 Identities=19% Similarity=0.080 Sum_probs=52.9
Q ss_pred CCCeEEEEcCCCCh---HHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCC----------CCC
Q 042544 100 SGQKVLDVGCGIGG---PLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMP----------FPD 166 (305)
Q Consensus 100 ~~~~vLDiGcG~G~---~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~----------~~~ 166 (305)
.|..||=-|.|.|. .+.++|+. +++++..|+++...+...+.++..| .+.....|+.+.. -+-
T Consensus 37 ~g~~vLITGgg~GlGr~ialefa~r-g~~~vl~Din~~~~~etv~~~~~~g---~~~~y~cdis~~eei~~~a~~Vk~e~ 112 (300)
T KOG1201|consen 37 SGEIVLITGGGSGLGRLIALEFAKR-GAKLVLWDINKQGNEETVKEIRKIG---EAKAYTCDISDREEIYRLAKKVKKEV 112 (300)
T ss_pred cCCEEEEeCCCchHHHHHHHHHHHh-CCeEEEEeccccchHHHHHHHHhcC---ceeEEEecCCCHHHHHHHHHHHHHhc
Confidence 57789988888873 45555554 7899999999988887777776654 5788888887631 112
Q ss_pred CCeeEEEeccc
Q 042544 167 NSFDAVYAIEA 177 (305)
Q Consensus 167 ~~fD~v~~~~~ 177 (305)
+..|+++.+..
T Consensus 113 G~V~ILVNNAG 123 (300)
T KOG1201|consen 113 GDVDILVNNAG 123 (300)
T ss_pred CCceEEEeccc
Confidence 56788887553
No 416
>PRK08339 short chain dehydrogenase; Provisional
Probab=68.56 E-value=38 Score=28.68 Aligned_cols=76 Identities=18% Similarity=0.231 Sum_probs=47.4
Q ss_pred CCCeEEEEcCCCCh---HHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCC-----C----CCC
Q 042544 100 SGQKVLDVGCGIGG---PLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMP-----F----PDN 167 (305)
Q Consensus 100 ~~~~vLDiGcG~G~---~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~-----~----~~~ 167 (305)
+++++|=.|++.|. .+..+++ .+++|+.++.++..++.+.+.+.... ..++.++..|+.+.. + .-+
T Consensus 7 ~~k~~lItGas~gIG~aia~~l~~-~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~Dv~~~~~i~~~~~~~~~~g 84 (263)
T PRK08339 7 SGKLAFTTASSKGIGFGVARVLAR-AGADVILLSRNEENLKKAREKIKSES-NVDVSYIVADLTKREDLERTVKELKNIG 84 (263)
T ss_pred CCCEEEEeCCCCcHHHHHHHHHHH-CCCEEEEEeCCHHHHHHHHHHHHhhc-CCceEEEEecCCCHHHHHHHHHHHHhhC
Confidence 46788888876553 2333333 37899999999887766655543321 235788889987632 0 114
Q ss_pred CeeEEEeccc
Q 042544 168 SFDAVYAIEA 177 (305)
Q Consensus 168 ~fD~v~~~~~ 177 (305)
..|+++.+..
T Consensus 85 ~iD~lv~nag 94 (263)
T PRK08339 85 EPDIFFFSTG 94 (263)
T ss_pred CCcEEEECCC
Confidence 5788776543
No 417
>PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases. The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A.
Probab=68.48 E-value=11 Score=32.88 Aligned_cols=78 Identities=18% Similarity=0.101 Sum_probs=44.4
Q ss_pred EcCCCChHHHHHHhh----cCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeE----EEEcCCCCCC-----CCCCCeeEEE
Q 042544 107 VGCGIGGPLREIAQF----SSTSVTGLNNNEYQITRGKELNRFAGVDKTCN----FVKADFMKMP-----FPDNSFDAVY 173 (305)
Q Consensus 107 iGcG~G~~~~~l~~~----~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~----~~~~d~~~~~-----~~~~~fD~v~ 173 (305)
|-.|+|..+..+.++ ...+++.+|.++..+-..++.+.......++. .+.+|+.+.. +....+|+|+
T Consensus 3 VTGa~GSIGseL~rql~~~~p~~lil~d~~E~~l~~l~~~l~~~~~~~~v~~~~~~vigDvrd~~~l~~~~~~~~pdiVf 82 (293)
T PF02719_consen 3 VTGAGGSIGSELVRQLLRYGPKKLILFDRDENKLYELERELRSRFPDPKVRFEIVPVIGDVRDKERLNRIFEEYKPDIVF 82 (293)
T ss_dssp EETTTSHHHHHHHHHHHCCB-SEEEEEES-HHHHHHHHHHCHHHC--TTCEEEEE--CTSCCHHHHHHHHTT--T-SEEE
T ss_pred EEccccHHHHHHHHHHHhcCCCeEEEeCCChhHHHHHHHHHhhcccccCcccccCceeecccCHHHHHHHHhhcCCCEEE
Confidence 345778888888753 23689999999988887777764332223454 3588887621 5556789999
Q ss_pred ecccccccCCh
Q 042544 174 AIEATCHAPDA 184 (305)
Q Consensus 174 ~~~~l~~~~~~ 184 (305)
-..++.|+|-.
T Consensus 83 HaAA~KhVpl~ 93 (293)
T PF02719_consen 83 HAAALKHVPLM 93 (293)
T ss_dssp E------HHHH
T ss_pred EChhcCCCChH
Confidence 88888888743
No 418
>cd05286 QOR2 Quinone oxidoreductase (QOR). Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone
Probab=68.35 E-value=60 Score=27.69 Aligned_cols=97 Identities=22% Similarity=0.261 Sum_probs=60.3
Q ss_pred HcCCCCCCeEEEEcC--CCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCC-----C-CCC
Q 042544 95 QLGLKSGQKVLDVGC--GIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKM-----P-FPD 166 (305)
Q Consensus 95 ~~~~~~~~~vLDiGc--G~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~-----~-~~~ 166 (305)
...+.++.+||=.|+ +.|..+..+++..+.+|++++.++...+.+++ .+.. .++..+-..+ . ...
T Consensus 131 ~~~~~~g~~vlI~g~~g~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~----~g~~---~~~~~~~~~~~~~~~~~~~~ 203 (320)
T cd05286 131 TYPVKPGDTVLVHAAAGGVGLLLTQWAKALGATVIGTVSSEEKAELARA----AGAD---HVINYRDEDFVERVREITGG 203 (320)
T ss_pred hcCCCCCCEEEEEcCCchHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHH----CCCC---EEEeCCchhHHHHHHHHcCC
Confidence 356678889998884 46667777776668999999998888776643 2321 1222111110 0 123
Q ss_pred CCeeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 167 NSFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 167 ~~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
..+|+++... ... .+....+.|+++|.++...
T Consensus 204 ~~~d~vl~~~-----~~~-------------~~~~~~~~l~~~g~~v~~g 235 (320)
T cd05286 204 RGVDVVYDGV-----GKD-------------TFEGSLDSLRPRGTLVSFG 235 (320)
T ss_pred CCeeEEEECC-----CcH-------------hHHHHHHhhccCcEEEEEe
Confidence 4588887532 111 3667889999999887653
No 419
>cd08270 MDR4 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=68.09 E-value=72 Score=27.32 Aligned_cols=90 Identities=20% Similarity=0.224 Sum_probs=56.8
Q ss_pred CCCCeEEEEcC--CCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEEecc
Q 042544 99 KSGQKVLDVGC--GIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIE 176 (305)
Q Consensus 99 ~~~~~vLDiGc--G~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~ 176 (305)
.++.+||=.|+ +.|..+..+++..+.++++++.++...+.+++ .|.. ..+. +..++ .++.+|+++..-
T Consensus 131 ~~~~~vli~g~~~~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~----~g~~---~~~~-~~~~~--~~~~~d~vl~~~ 200 (305)
T cd08270 131 LLGRRVLVTGASGGVGRFAVQLAALAGAHVVAVVGSPARAEGLRE----LGAA---EVVV-GGSEL--SGAPVDLVVDSV 200 (305)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH----cCCc---EEEe-ccccc--cCCCceEEEECC
Confidence 35889998887 35556666665568899999988887777654 2322 1111 11111 224588887431
Q ss_pred cccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 177 ATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 177 ~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
... .+....+.|+++|.++...
T Consensus 201 -----g~~-------------~~~~~~~~l~~~G~~v~~g 222 (305)
T cd08270 201 -----GGP-------------QLARALELLAPGGTVVSVG 222 (305)
T ss_pred -----CcH-------------HHHHHHHHhcCCCEEEEEe
Confidence 111 3677899999999888654
No 420
>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase. 6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy
Probab=68.00 E-value=23 Score=31.39 Aligned_cols=94 Identities=18% Similarity=0.233 Sum_probs=54.9
Q ss_pred CCCCCeEEEEcCC-CChHHHHHHhhcCC-eEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCC-----CCCCCCee
Q 042544 98 LKSGQKVLDVGCG-IGGPLREIAQFSST-SVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKM-----PFPDNSFD 170 (305)
Q Consensus 98 ~~~~~~vLDiGcG-~G~~~~~l~~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~-----~~~~~~fD 170 (305)
+.++.+||-.|+| .|..+..+++..+. .|++++.++...+.+++. |.. .++...-..+ ....+.+|
T Consensus 173 ~~~~~~vlI~g~g~vg~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~----g~~---~~~~~~~~~~~~~~~~~~~~~~d 245 (350)
T cd08240 173 LVADEPVVIIGAGGLGLMALALLKALGPANIIVVDIDEAKLEAAKAA----GAD---VVVNGSDPDAAKRIIKAAGGGVD 245 (350)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHh----CCc---EEecCCCccHHHHHHHHhCCCCc
Confidence 3467889888765 34455556655577 799999988887776442 321 1111110000 01112578
Q ss_pred EEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEE
Q 042544 171 AVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIW 215 (305)
Q Consensus 171 ~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~ 215 (305)
+++... .... .+....+.|+++|.++..
T Consensus 246 ~vid~~-----g~~~------------~~~~~~~~l~~~g~~v~~ 273 (350)
T cd08240 246 AVIDFV-----NNSA------------TASLAFDILAKGGKLVLV 273 (350)
T ss_pred EEEECC-----CCHH------------HHHHHHHHhhcCCeEEEE
Confidence 876421 1111 478889999999998864
No 421
>PRK06914 short chain dehydrogenase; Provisional
Probab=67.89 E-value=38 Score=28.78 Aligned_cols=75 Identities=8% Similarity=-0.063 Sum_probs=45.8
Q ss_pred CCeEEEEcCCCChHHHHHHh---hcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCC-C---C-----CCC
Q 042544 101 GQKVLDVGCGIGGPLREIAQ---FSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMP-F---P-----DNS 168 (305)
Q Consensus 101 ~~~vLDiGcG~G~~~~~l~~---~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~-~---~-----~~~ 168 (305)
+.++|=.|++ |..+..+++ ..+.+|++++-++..++...+.....+...++.++.+|+.+.. . . -+.
T Consensus 3 ~k~~lItGas-g~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~~ 81 (280)
T PRK06914 3 KKIAIVTGAS-SGFGLLTTLELAKKGYLVIATMRNPEKQENLLSQATQLNLQQNIKVQQLDVTDQNSIHNFQLVLKEIGR 81 (280)
T ss_pred CCEEEEECCC-chHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcCCCCceeEEecCCCCHHHHHHHHHHHHhcCC
Confidence 4568877754 444444442 1378999999888776655544443333446888999997632 0 0 135
Q ss_pred eeEEEecc
Q 042544 169 FDAVYAIE 176 (305)
Q Consensus 169 fD~v~~~~ 176 (305)
.|.|+.+.
T Consensus 82 id~vv~~a 89 (280)
T PRK06914 82 IDLLVNNA 89 (280)
T ss_pred eeEEEECC
Confidence 68777654
No 422
>PRK05867 short chain dehydrogenase; Provisional
Probab=67.68 E-value=37 Score=28.40 Aligned_cols=76 Identities=13% Similarity=0.073 Sum_probs=48.4
Q ss_pred CCCeEEEEcCCCChHHHHHHh---hcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCC-----C-----CC
Q 042544 100 SGQKVLDVGCGIGGPLREIAQ---FSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMP-----F-----PD 166 (305)
Q Consensus 100 ~~~~vLDiGcG~G~~~~~l~~---~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~-----~-----~~ 166 (305)
.++++|=.|++.| .+..+++ ..+.+|+.++.++..++...+.+...+ .++.++..|+.+.. + .-
T Consensus 8 ~~k~vlVtGas~g-IG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~ 84 (253)
T PRK05867 8 HGKRALITGASTG-IGKRVALAYVEAGAQVAIAARHLDALEKLADEIGTSG--GKVVPVCCDVSQHQQVTSMLDQVTAEL 84 (253)
T ss_pred CCCEEEEECCCch-HHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcC--CeEEEEEccCCCHHHHHHHHHHHHHHh
Confidence 4678998887654 3444332 137899999999887766655554433 35778888887521 0 01
Q ss_pred CCeeEEEecccc
Q 042544 167 NSFDAVYAIEAT 178 (305)
Q Consensus 167 ~~fD~v~~~~~l 178 (305)
+..|.++.+...
T Consensus 85 g~id~lv~~ag~ 96 (253)
T PRK05867 85 GGIDIAVCNAGI 96 (253)
T ss_pred CCCCEEEECCCC
Confidence 468988866543
No 423
>PRK05396 tdh L-threonine 3-dehydrogenase; Validated
Probab=67.48 E-value=26 Score=30.89 Aligned_cols=97 Identities=22% Similarity=0.334 Sum_probs=55.4
Q ss_pred CCCCeEEEEcCCC-ChHHHHHHhhcCC-eEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCC-C-C-CCCCCeeEEE
Q 042544 99 KSGQKVLDVGCGI-GGPLREIAQFSST-SVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMK-M-P-FPDNSFDAVY 173 (305)
Q Consensus 99 ~~~~~vLDiGcG~-G~~~~~l~~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~-~-~-~~~~~fD~v~ 173 (305)
.++.+||-.|+|. |..+..+++..+. +|++++.++...+.+++. |...-+.....+..+ + . .....+|+|+
T Consensus 162 ~~g~~vlV~~~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~l----g~~~~~~~~~~~~~~~~~~~~~~~~~d~v~ 237 (341)
T PRK05396 162 LVGEDVLITGAGPIGIMAAAVAKHVGARHVVITDVNEYRLELARKM----GATRAVNVAKEDLRDVMAELGMTEGFDVGL 237 (341)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHh----CCcEEecCccccHHHHHHHhcCCCCCCEEE
Confidence 4677888777653 5566666655576 688888888777665542 321100011111100 0 0 1234578887
Q ss_pred ecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 174 AIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 174 ~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
.... .. . .+..+.+.|+++|.++...
T Consensus 238 d~~g-----~~-~-----------~~~~~~~~l~~~G~~v~~g 263 (341)
T PRK05396 238 EMSG-----AP-S-----------AFRQMLDNMNHGGRIAMLG 263 (341)
T ss_pred ECCC-----CH-H-----------HHHHHHHHHhcCCEEEEEe
Confidence 5211 11 1 4788899999999988764
No 424
>PRK07904 short chain dehydrogenase; Provisional
Probab=66.95 E-value=32 Score=28.96 Aligned_cols=76 Identities=12% Similarity=0.034 Sum_probs=46.4
Q ss_pred CCCCeEEEEcCCCChHHHHHH----hhcCCeEEEEcCCHHH-HHHHHHHHHhcCCCCCeEEEEcCCCCCC-----C----
Q 042544 99 KSGQKVLDVGCGIGGPLREIA----QFSSTSVTGLNNNEYQ-ITRGKELNRFAGVDKTCNFVKADFMKMP-----F---- 164 (305)
Q Consensus 99 ~~~~~vLDiGcG~G~~~~~l~----~~~~~~v~gvD~s~~~-l~~a~~~~~~~~~~~~~~~~~~d~~~~~-----~---- 164 (305)
..+.+||=.|++. ..+..++ +..+.+|+.++.++.. ++.+.+.+...+ ..+++++..|+.+.. +
T Consensus 6 ~~~~~vlItGas~-giG~~la~~l~~~gg~~V~~~~r~~~~~~~~~~~~l~~~~-~~~v~~~~~D~~~~~~~~~~~~~~~ 83 (253)
T PRK07904 6 GNPQTILLLGGTS-EIGLAICERYLKNAPARVVLAALPDDPRRDAAVAQMKAAG-ASSVEVIDFDALDTDSHPKVIDAAF 83 (253)
T ss_pred CCCcEEEEEcCCc-HHHHHHHHHHHhcCCCeEEEEeCCcchhHHHHHHHHHhcC-CCceEEEEecCCChHHHHHHHHHHH
Confidence 3567899888854 4555555 2224799999887764 555444444433 236888999987532 1
Q ss_pred CCCCeeEEEecc
Q 042544 165 PDNSFDAVYAIE 176 (305)
Q Consensus 165 ~~~~fD~v~~~~ 176 (305)
..+..|+++...
T Consensus 84 ~~g~id~li~~a 95 (253)
T PRK07904 84 AGGDVDVAIVAF 95 (253)
T ss_pred hcCCCCEEEEee
Confidence 114688777543
No 425
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=66.07 E-value=20 Score=31.88 Aligned_cols=98 Identities=21% Similarity=0.330 Sum_probs=59.2
Q ss_pred HcCCCCCCeEEEEcCCC-ChHHHHHHhh-cCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEc----CCCC--CCCCC
Q 042544 95 QLGLKSGQKVLDVGCGI-GGPLREIAQF-SSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKA----DFMK--MPFPD 166 (305)
Q Consensus 95 ~~~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~----d~~~--~~~~~ 166 (305)
.+.+++|.+|.=+|||. |..++.-+.. ...+++++|+++.-++.|++. |.. +++.. |+.+ ....+
T Consensus 180 ta~v~~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~~f----GAT---~~vn~~~~~~vv~~i~~~T~ 252 (366)
T COG1062 180 TAKVEPGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKKF----GAT---HFVNPKEVDDVVEAIVELTD 252 (366)
T ss_pred cccCCCCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHHhc----CCc---eeecchhhhhHHHHHHHhcC
Confidence 45678899999999984 4444443432 347999999999999998874 322 22222 1111 01122
Q ss_pred CCeeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 167 NSFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 167 ~~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
+..|.++- ..-+ ...++....++.++|..++.-
T Consensus 253 gG~d~~~e-----~~G~------------~~~~~~al~~~~~~G~~v~iG 285 (366)
T COG1062 253 GGADYAFE-----CVGN------------VEVMRQALEATHRGGTSVIIG 285 (366)
T ss_pred CCCCEEEE-----ccCC------------HHHHHHHHHHHhcCCeEEEEe
Confidence 34455431 1111 125888888999999877753
No 426
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=65.57 E-value=29 Score=24.54 Aligned_cols=76 Identities=12% Similarity=0.074 Sum_probs=43.6
Q ss_pred CeEEEEcCCCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEEeccccccc
Q 042544 102 QKVLDVGCGIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIEATCHA 181 (305)
Q Consensus 102 ~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~ 181 (305)
.+|| +-||+|..+..++.. .++.+...|++ +++...+..+++-....+|+|+..--+.|
T Consensus 4 ~~IL-l~C~~G~sSS~l~~k-----------------~~~~~~~~gi~--~~v~a~~~~~~~~~~~~~Dvill~pqi~~- 62 (95)
T TIGR00853 4 TNIL-LLCAAGMSTSLLVNK-----------------MNKAAEEYGVP--VKIAAGSYGAAGEKLDDADVVLLAPQVAY- 62 (95)
T ss_pred cEEE-EECCCchhHHHHHHH-----------------HHHHHHHCCCc--EEEEEecHHHHHhhcCCCCEEEECchHHH-
Confidence 4677 789999776655532 23333444553 66777666554322345899886532221
Q ss_pred CChhhhhhcCCCCCcccHHHHHHHHHhCCceEE
Q 042544 182 PDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVI 214 (305)
Q Consensus 182 ~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i 214 (305)
.+.++.+.+.+-|.-+.
T Consensus 63 ----------------~~~~i~~~~~~~~ipv~ 79 (95)
T TIGR00853 63 ----------------MLPDLKKETDKKGIPVE 79 (95)
T ss_pred ----------------HHHHHHHHhhhcCCCEE
Confidence 36667777766665444
No 427
>PRK09242 tropinone reductase; Provisional
Probab=65.28 E-value=47 Score=27.79 Aligned_cols=78 Identities=13% Similarity=0.043 Sum_probs=47.8
Q ss_pred CCCeEEEEcCCCChHHHHHHh---hcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCC-----C-----CC
Q 042544 100 SGQKVLDVGCGIGGPLREIAQ---FSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMP-----F-----PD 166 (305)
Q Consensus 100 ~~~~vLDiGcG~G~~~~~l~~---~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~-----~-----~~ 166 (305)
.++++|=.|++.| .+..+++ ..+.+|+.++.++..++...+.+.......++.++.+|+.+.. + .-
T Consensus 8 ~~k~~lItGa~~g-IG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 86 (257)
T PRK09242 8 DGQTALITGASKG-IGLAIAREFLGLGADVLIVARDADALAQARDELAEEFPEREVHGLAADVSDDEDRRAILDWVEDHW 86 (257)
T ss_pred CCCEEEEeCCCch-HHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 4678888887544 3333332 2378999999988777666555443311235778888987521 0 11
Q ss_pred CCeeEEEecccc
Q 042544 167 NSFDAVYAIEAT 178 (305)
Q Consensus 167 ~~fD~v~~~~~l 178 (305)
+.+|.|+.....
T Consensus 87 g~id~li~~ag~ 98 (257)
T PRK09242 87 DGLHILVNNAGG 98 (257)
T ss_pred CCCCEEEECCCC
Confidence 457888766543
No 428
>cd08235 iditol_2_DH_like L-iditol 2-dehydrogenase. Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, i
Probab=65.28 E-value=72 Score=27.96 Aligned_cols=97 Identities=24% Similarity=0.335 Sum_probs=58.7
Q ss_pred cCCCCCCeEEEEcCC-CChHHHHHHhhcCCe-EEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCC-----C-CCCC
Q 042544 96 LGLKSGQKVLDVGCG-IGGPLREIAQFSSTS-VTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKM-----P-FPDN 167 (305)
Q Consensus 96 ~~~~~~~~vLDiGcG-~G~~~~~l~~~~~~~-v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~-----~-~~~~ 167 (305)
+.+.++.+||=.|+| .|..+..+++..+.+ +++++.++...+.+++ .+.. .++..+-..+ . .+..
T Consensus 161 ~~~~~g~~VlV~g~g~vg~~~~~la~~~g~~~v~~~~~s~~~~~~~~~----~g~~---~~~~~~~~~~~~~i~~~~~~~ 233 (343)
T cd08235 161 AGIKPGDTVLVIGAGPIGLLHAMLAKASGARKVIVSDLNEFRLEFAKK----LGAD---YTIDAAEEDLVEKVRELTDGR 233 (343)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHH----hCCc---EEecCCccCHHHHHHHHhCCc
Confidence 467788899888875 555666666656778 9999998888776643 2321 1221111110 0 1223
Q ss_pred CeeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 168 SFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 168 ~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
.+|+|+.... ... .+..+.+.|+++|.++...
T Consensus 234 ~vd~vld~~~-----~~~------------~~~~~~~~l~~~g~~v~~~ 265 (343)
T cd08235 234 GADVVIVATG-----SPE------------AQAQALELVRKGGRILFFG 265 (343)
T ss_pred CCCEEEECCC-----ChH------------HHHHHHHHhhcCCEEEEEe
Confidence 4888874311 111 3777889999999987654
No 429
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=64.86 E-value=49 Score=27.61 Aligned_cols=75 Identities=21% Similarity=0.167 Sum_probs=47.4
Q ss_pred CCCeEEEEcCCCChHHHHHHh---hcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCC-----C-----CC
Q 042544 100 SGQKVLDVGCGIGGPLREIAQ---FSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMP-----F-----PD 166 (305)
Q Consensus 100 ~~~~vLDiGcG~G~~~~~l~~---~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~-----~-----~~ 166 (305)
+++++|=.|++ |..+..+++ ..+.+|+.++.++..++...+.+...+ .++.++.+|+.+.. + .-
T Consensus 10 ~~k~ilItGas-~~IG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 86 (256)
T PRK06124 10 AGQVALVTGSA-RGLGFEIARALAGAGAHVLVNGRNAATLEAAVAALRAAG--GAAEALAFDIADEEAVAAAFARIDAEH 86 (256)
T ss_pred CCCEEEEECCC-chHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHhcC--CceEEEEccCCCHHHHHHHHHHHHHhc
Confidence 46789978864 444554442 137899999999877665555544433 35788888987521 0 01
Q ss_pred CCeeEEEeccc
Q 042544 167 NSFDAVYAIEA 177 (305)
Q Consensus 167 ~~fD~v~~~~~ 177 (305)
+++|.++.+..
T Consensus 87 ~~id~vi~~ag 97 (256)
T PRK06124 87 GRLDILVNNVG 97 (256)
T ss_pred CCCCEEEECCC
Confidence 35688776543
No 430
>PRK07677 short chain dehydrogenase; Provisional
Probab=64.56 E-value=47 Score=27.75 Aligned_cols=72 Identities=14% Similarity=0.020 Sum_probs=44.6
Q ss_pred CeEEEEcCCCChHHHHHHh---hcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCC-C---------CCCC
Q 042544 102 QKVLDVGCGIGGPLREIAQ---FSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMP-F---------PDNS 168 (305)
Q Consensus 102 ~~vLDiGcG~G~~~~~l~~---~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~-~---------~~~~ 168 (305)
+++|=.|++.| .+..+++ ..+.+|++++.++..++...+.+...+ .++.++..|+.+.. . .-+.
T Consensus 2 k~~lItG~s~g-iG~~ia~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 78 (252)
T PRK07677 2 KVVIITGGSSG-MGKAMAKRFAEEGANVVITGRTKEKLEEAKLEIEQFP--GQVLTVQMDVRNPEDVQKMVEQIDEKFGR 78 (252)
T ss_pred CEEEEeCCCCh-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEecCCCHHHHHHHHHHHHHHhCC
Confidence 57887777554 4444332 237899999998877766555544332 35788888886521 0 0135
Q ss_pred eeEEEecc
Q 042544 169 FDAVYAIE 176 (305)
Q Consensus 169 fD~v~~~~ 176 (305)
.|.++.+.
T Consensus 79 id~lI~~a 86 (252)
T PRK07677 79 IDALINNA 86 (252)
T ss_pred ccEEEECC
Confidence 78887654
No 431
>cd05288 PGDH Prostaglandin dehydrogenases. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
Probab=64.22 E-value=30 Score=30.15 Aligned_cols=96 Identities=16% Similarity=0.189 Sum_probs=57.9
Q ss_pred cCCCCCCeEEEEcC--CCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCC-----CCCCCC
Q 042544 96 LGLKSGQKVLDVGC--GIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKM-----PFPDNS 168 (305)
Q Consensus 96 ~~~~~~~~vLDiGc--G~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~-----~~~~~~ 168 (305)
..+.++.+||=.|+ +.|..+..+++..+.+|++++.++...+.+++.. +.. .++..+-.++ ......
T Consensus 141 ~~~~~~~~vlI~g~~g~ig~~~~~~a~~~G~~vi~~~~~~~~~~~~~~~~---g~~---~~~~~~~~~~~~~v~~~~~~~ 214 (329)
T cd05288 141 GKPKPGETVVVSAAAGAVGSVVGQIAKLLGARVVGIAGSDEKCRWLVEEL---GFD---AAINYKTPDLAEALKEAAPDG 214 (329)
T ss_pred cCCCCCCEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhhc---CCc---eEEecCChhHHHHHHHhccCC
Confidence 45667889988874 3566667777666889999998888777665421 221 1111111000 011245
Q ss_pred eeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEE
Q 042544 169 FDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIW 215 (305)
Q Consensus 169 fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~ 215 (305)
+|+++..-. .. .+....+.|+++|.++..
T Consensus 215 ~d~vi~~~g-----~~-------------~~~~~~~~l~~~G~~v~~ 243 (329)
T cd05288 215 IDVYFDNVG-----GE-------------ILDAALTLLNKGGRIALC 243 (329)
T ss_pred ceEEEEcch-----HH-------------HHHHHHHhcCCCceEEEE
Confidence 788874311 11 377888999999987754
No 432
>PRK13771 putative alcohol dehydrogenase; Provisional
Probab=63.71 E-value=42 Score=29.36 Aligned_cols=96 Identities=19% Similarity=0.237 Sum_probs=58.9
Q ss_pred cCCCCCCeEEEEcCC--CChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCeeEEE
Q 042544 96 LGLKSGQKVLDVGCG--IGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVY 173 (305)
Q Consensus 96 ~~~~~~~~vLDiGcG--~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~ 173 (305)
+.+.++.+||=.|++ .|..+..+++..+.+++.++.++...+.+++. ...-.... .+ ..++..+ +.+|+++
T Consensus 158 ~~~~~~~~vlI~g~~g~~g~~~~~la~~~g~~vi~~~~~~~~~~~~~~~-~~~~~~~~-~~-~~~v~~~----~~~d~~l 230 (334)
T PRK13771 158 AGVKKGETVLVTGAGGGVGIHAIQVAKALGAKVIAVTSSESKAKIVSKY-ADYVIVGS-KF-SEEVKKI----GGADIVI 230 (334)
T ss_pred cCCCCCCEEEEECCCccHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHH-HHHhcCch-hH-HHHHHhc----CCCcEEE
Confidence 366778899988883 56677777766689999999998888777553 11101100 00 0011111 1367776
Q ss_pred ecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 174 AIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 174 ~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
.... .. .+..+.+.|+++|.++...
T Consensus 231 d~~g-----~~-------------~~~~~~~~l~~~G~~v~~g 255 (334)
T PRK13771 231 ETVG-----TP-------------TLEESLRSLNMGGKIIQIG 255 (334)
T ss_pred EcCC-----hH-------------HHHHHHHHHhcCCEEEEEe
Confidence 4311 11 3677889999999987654
No 433
>PRK06172 short chain dehydrogenase; Provisional
Probab=63.70 E-value=53 Score=27.36 Aligned_cols=75 Identities=21% Similarity=0.163 Sum_probs=47.8
Q ss_pred CCCeEEEEcCCCChHHHHHHh---hcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCC-----CC-----C
Q 042544 100 SGQKVLDVGCGIGGPLREIAQ---FSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMP-----FP-----D 166 (305)
Q Consensus 100 ~~~~vLDiGcG~G~~~~~l~~---~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~-----~~-----~ 166 (305)
.+.+||=.|++. ..+..+++ ..+.+|+.++.++..++...+.+...+ .++.++.+|+.+.. +. -
T Consensus 6 ~~k~ilItGas~-~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~i~~~~~~~~~~~ 82 (253)
T PRK06172 6 SGKVALVTGGAA-GIGRATALAFAREGAKVVVADRDAAGGEETVALIREAG--GEALFVACDVTRDAEVKALVEQTIAAY 82 (253)
T ss_pred CCCEEEEeCCCc-hHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHHHh
Confidence 457889888654 44444442 137899999999877766555554433 35888899987521 00 1
Q ss_pred CCeeEEEeccc
Q 042544 167 NSFDAVYAIEA 177 (305)
Q Consensus 167 ~~fD~v~~~~~ 177 (305)
+.+|+|+.+..
T Consensus 83 g~id~li~~ag 93 (253)
T PRK06172 83 GRLDYAFNNAG 93 (253)
T ss_pred CCCCEEEECCC
Confidence 35788887654
No 434
>cd08266 Zn_ADH_like1 Alcohol dehydrogenases of the MDR family. This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone
Probab=63.33 E-value=17 Score=31.74 Aligned_cols=95 Identities=27% Similarity=0.380 Sum_probs=57.9
Q ss_pred HcCCCCCCeEEEEcCC--CChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCC--------C
Q 042544 95 QLGLKSGQKVLDVGCG--IGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMP--------F 164 (305)
Q Consensus 95 ~~~~~~~~~vLDiGcG--~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~--------~ 164 (305)
...+.++.+||=.|++ .|..+..++...+.+++.++.++...+.++. .+.. ..+ +..... .
T Consensus 161 ~~~~~~~~~vlI~g~~~~iG~~~~~~~~~~g~~v~~~~~~~~~~~~~~~----~~~~---~~~--~~~~~~~~~~~~~~~ 231 (342)
T cd08266 161 RARLRPGETVLVHGAGSGVGSAAIQIAKLFGATVIATAGSEDKLERAKE----LGAD---YVI--DYRKEDFVREVRELT 231 (342)
T ss_pred hcCCCCCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH----cCCC---eEE--ecCChHHHHHHHHHh
Confidence 4566778899988875 4556666665558899999998877666533 2221 111 111100 1
Q ss_pred CCCCeeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 165 PDNSFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 165 ~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
....+|+++.... .. .+..+.+.|+++|.++...
T Consensus 232 ~~~~~d~~i~~~g-----~~-------------~~~~~~~~l~~~G~~v~~~ 265 (342)
T cd08266 232 GKRGVDVVVEHVG-----AA-------------TWEKSLKSLARGGRLVTCG 265 (342)
T ss_pred CCCCCcEEEECCc-----HH-------------HHHHHHHHhhcCCEEEEEe
Confidence 1245788875422 11 3677888999999877653
No 435
>PLN02780 ketoreductase/ oxidoreductase
Probab=63.12 E-value=37 Score=29.91 Aligned_cols=60 Identities=15% Similarity=0.014 Sum_probs=39.1
Q ss_pred CCCeEEEEcCCCCh---HHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 042544 100 SGQKVLDVGCGIGG---PLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFM 160 (305)
Q Consensus 100 ~~~~vLDiGcG~G~---~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~ 160 (305)
.|..+|=.|++.|. ++..+++. +.+|+.++.+++.++...+.+........+..+..|+.
T Consensus 52 ~g~~~lITGAs~GIG~alA~~La~~-G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~~~Dl~ 114 (320)
T PLN02780 52 YGSWALVTGPTDGIGKGFAFQLARK-GLNLVLVARNPDKLKDVSDSIQSKYSKTQIKTVVVDFS 114 (320)
T ss_pred cCCEEEEeCCCcHHHHHHHHHHHHC-CCCEEEEECCHHHHHHHHHHHHHHCCCcEEEEEEEECC
Confidence 36788988876553 33334443 78999999999888776665543221224666777775
No 436
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=63.11 E-value=68 Score=29.26 Aligned_cols=70 Identities=23% Similarity=0.227 Sum_probs=45.8
Q ss_pred CeEEEEcCCC-ChHHHH-HHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCC---CCCCeeEEEecc
Q 042544 102 QKVLDVGCGI-GGPLRE-IAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPF---PDNSFDAVYAIE 176 (305)
Q Consensus 102 ~~vLDiGcG~-G~~~~~-l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~---~~~~fD~v~~~~ 176 (305)
++||=||||. |..... +++....+|+..|-|+..++.+.... ..+++..+.|+.+.+- --..+|+|+...
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~-----~~~v~~~~vD~~d~~al~~li~~~d~VIn~~ 76 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELI-----GGKVEALQVDAADVDALVALIKDFDLVINAA 76 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhc-----cccceeEEecccChHHHHHHHhcCCEEEEeC
Confidence 4789999962 333333 23443489999999998888776542 2368899999987430 013458888653
No 437
>PRK05876 short chain dehydrogenase; Provisional
Probab=63.08 E-value=51 Score=28.17 Aligned_cols=76 Identities=13% Similarity=0.025 Sum_probs=47.2
Q ss_pred CCCeEEEEcCCCChHHHHHHh---hcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCC-----C-----CC
Q 042544 100 SGQKVLDVGCGIGGPLREIAQ---FSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMP-----F-----PD 166 (305)
Q Consensus 100 ~~~~vLDiGcG~G~~~~~l~~---~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~-----~-----~~ 166 (305)
.+.++|=.|++.| .+..+++ ..+.+|+.+|.++..++...+.+...+ .++.++..|+.+.. + .-
T Consensus 5 ~~k~vlVTGas~g-IG~ala~~La~~G~~Vv~~~r~~~~l~~~~~~l~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 81 (275)
T PRK05876 5 PGRGAVITGGASG-IGLATGTEFARRGARVVLGDVDKPGLRQAVNHLRAEG--FDVHGVMCDVRHREEVTHLADEAFRLL 81 (275)
T ss_pred CCCEEEEeCCCch-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CeEEEEeCCCCCHHHHHHHHHHHHHHc
Confidence 4567887776544 4444442 137899999998877766555444332 24778888987621 0 01
Q ss_pred CCeeEEEecccc
Q 042544 167 NSFDAVYAIEAT 178 (305)
Q Consensus 167 ~~fD~v~~~~~l 178 (305)
+..|+++.+..+
T Consensus 82 g~id~li~nAg~ 93 (275)
T PRK05876 82 GHVDVVFSNAGI 93 (275)
T ss_pred CCCCEEEECCCc
Confidence 357888876543
No 438
>PRK08324 short chain dehydrogenase; Validated
Probab=63.02 E-value=71 Score=31.55 Aligned_cols=74 Identities=18% Similarity=0.098 Sum_probs=46.3
Q ss_pred CCCeEEEEcCCCChHHHHHHh---hcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCC-----CC-----C
Q 042544 100 SGQKVLDVGCGIGGPLREIAQ---FSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMP-----FP-----D 166 (305)
Q Consensus 100 ~~~~vLDiGcG~G~~~~~l~~---~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~-----~~-----~ 166 (305)
++++||=.|++ |..+..+++ ..+.+|+.+|.++..++.+.+.+... .++.++..|+.+.. +. .
T Consensus 421 ~gk~vLVTGas-ggIG~~la~~L~~~Ga~Vvl~~r~~~~~~~~~~~l~~~---~~v~~v~~Dvtd~~~v~~~~~~~~~~~ 496 (681)
T PRK08324 421 AGKVALVTGAA-GGIGKATAKRLAAEGACVVLADLDEEAAEAAAAELGGP---DRALGVACDVTDEAAVQAAFEEAALAF 496 (681)
T ss_pred CCCEEEEecCC-CHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHhcc---CcEEEEEecCCCHHHHHHHHHHHHHHc
Confidence 45788877764 344444442 23789999999988776655443321 35788888887521 10 1
Q ss_pred CCeeEEEeccc
Q 042544 167 NSFDAVYAIEA 177 (305)
Q Consensus 167 ~~fD~v~~~~~ 177 (305)
+.+|+|+.+-.
T Consensus 497 g~iDvvI~~AG 507 (681)
T PRK08324 497 GGVDIVVSNAG 507 (681)
T ss_pred CCCCEEEECCC
Confidence 35898886654
No 439
>PRK08251 short chain dehydrogenase; Provisional
Probab=62.71 E-value=54 Score=27.17 Aligned_cols=76 Identities=13% Similarity=-0.010 Sum_probs=47.5
Q ss_pred CeEEEEcCCCChHHHHHHhh---cCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCC-C---------CCCC
Q 042544 102 QKVLDVGCGIGGPLREIAQF---SSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMP-F---------PDNS 168 (305)
Q Consensus 102 ~~vLDiGcG~G~~~~~l~~~---~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~-~---------~~~~ 168 (305)
+++|=.|+ +|..+..+++. .+.+|+.++.++..++.....+.......++.++.+|+.+.. . .-+.
T Consensus 3 k~vlItGa-s~giG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 81 (248)
T PRK08251 3 QKILITGA-SSGLGAGMAREFAAKGRDLALCARRTDRLEELKAELLARYPGIKVAVAALDVNDHDQVFEVFAEFRDELGG 81 (248)
T ss_pred CEEEEECC-CCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence 46887775 56666665532 368999999998877665554443222235788899988631 0 1135
Q ss_pred eeEEEecccc
Q 042544 169 FDAVYAIEAT 178 (305)
Q Consensus 169 fD~v~~~~~l 178 (305)
.|.++.+...
T Consensus 82 id~vi~~ag~ 91 (248)
T PRK08251 82 LDRVIVNAGI 91 (248)
T ss_pred CCEEEECCCc
Confidence 7888765543
No 440
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=62.50 E-value=26 Score=31.43 Aligned_cols=101 Identities=18% Similarity=0.279 Sum_probs=57.8
Q ss_pred HcCCCCCCeEEEEcCC-CChHHHHHHhhcCC-eEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEc--CCCC-C-CCCCCC
Q 042544 95 QLGLKSGQKVLDVGCG-IGGPLREIAQFSST-SVTGLNNNEYQITRGKELNRFAGVDKTCNFVKA--DFMK-M-PFPDNS 168 (305)
Q Consensus 95 ~~~~~~~~~vLDiGcG-~G~~~~~l~~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~--d~~~-~-~~~~~~ 168 (305)
...+.++.+||=.|+| .|..+..+++..+. +|+++|.++..++.+++ .|...-+..... ++.. + ....+.
T Consensus 182 ~~~~~~g~~VlV~G~g~vG~~a~q~ak~~G~~~vi~~~~~~~~~~~~~~----~Ga~~~i~~~~~~~~~~~~v~~~~~~~ 257 (369)
T cd08301 182 VAKVKKGSTVAIFGLGAVGLAVAEGARIRGASRIIGVDLNPSKFEQAKK----FGVTEFVNPKDHDKPVQEVIAEMTGGG 257 (369)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----cCCceEEcccccchhHHHHHHHHhCCC
Confidence 4567789999988865 33445555655576 79999999988887754 232211111110 0000 0 011235
Q ss_pred eeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhC-CceEEEe
Q 042544 169 FDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQA-GFEVIWE 216 (305)
Q Consensus 169 fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~g-G~~~i~~ 216 (305)
+|+++-.- .... .+....+.++++ |.+++..
T Consensus 258 ~d~vid~~-----G~~~------------~~~~~~~~~~~~~g~~v~~g 289 (369)
T cd08301 258 VDYSFECT-----GNID------------AMISAFECVHDGWGVTVLLG 289 (369)
T ss_pred CCEEEECC-----CChH------------HHHHHHHHhhcCCCEEEEEC
Confidence 78776421 1111 367788899996 8877654
No 441
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=62.34 E-value=24 Score=31.12 Aligned_cols=98 Identities=21% Similarity=0.341 Sum_probs=59.3
Q ss_pred HcCCCCCCeEEEEcCCCChHHHHHH-hh-cCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCC-------CC
Q 042544 95 QLGLKSGQKVLDVGCGIGGPLREIA-QF-SSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMP-------FP 165 (305)
Q Consensus 95 ~~~~~~~~~vLDiGcG~G~~~~~l~-~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~-------~~ 165 (305)
...+.+|.+|.=+|+|.=.++...- +. ..++++|+|+++.-.+.|++. |..+-++-. |..+ | .-
T Consensus 187 ~Akv~~GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak~f----GaTe~iNp~--d~~~-~i~evi~EmT 259 (375)
T KOG0022|consen 187 TAKVEPGSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFEKAKEF----GATEFINPK--DLKK-PIQEVIIEMT 259 (375)
T ss_pred hcccCCCCEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHHHHHhc----CcceecChh--hccc-cHHHHHHHHh
Confidence 3456788899889888644444443 32 347999999999999988774 332211111 3332 2 22
Q ss_pred CCCeeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhC-CceEEEe
Q 042544 166 DNSFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQA-GFEVIWE 216 (305)
Q Consensus 166 ~~~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~g-G~~~i~~ 216 (305)
++.+|.-+- .+-+ ..+++++....+.| |.-++.-
T Consensus 260 dgGvDysfE-----c~G~------------~~~m~~al~s~h~GwG~sv~iG 294 (375)
T KOG0022|consen 260 DGGVDYSFE-----CIGN------------VSTMRAALESCHKGWGKSVVIG 294 (375)
T ss_pred cCCceEEEE-----ecCC------------HHHHHHHHHHhhcCCCeEEEEE
Confidence 455555441 1122 22588888888888 8766643
No 442
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=61.92 E-value=24 Score=31.64 Aligned_cols=101 Identities=20% Similarity=0.273 Sum_probs=58.9
Q ss_pred HcCCCCCCeEEEEcCC-CChHHHHHHhhcCC-eEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEc--CCCC-C-CCCCCC
Q 042544 95 QLGLKSGQKVLDVGCG-IGGPLREIAQFSST-SVTGLNNNEYQITRGKELNRFAGVDKTCNFVKA--DFMK-M-PFPDNS 168 (305)
Q Consensus 95 ~~~~~~~~~vLDiGcG-~G~~~~~l~~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~--d~~~-~-~~~~~~ 168 (305)
...+.++.+||=+|+| .|..+..+++..+. .|+++|.++..++.+++ .|...-+..... +... . ....+.
T Consensus 181 ~~~~~~g~~VlV~G~G~vG~~a~~~ak~~G~~~vi~~~~~~~~~~~~~~----lGa~~~i~~~~~~~~~~~~v~~~~~~g 256 (368)
T cd08300 181 TAKVEPGSTVAVFGLGAVGLAVIQGAKAAGASRIIGIDINPDKFELAKK----FGATDCVNPKDHDKPIQQVLVEMTDGG 256 (368)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH----cCCCEEEcccccchHHHHHHHHHhCCC
Confidence 4567789999999875 34455556655577 79999999998887754 232211111110 0100 0 011235
Q ss_pred eeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhC-CceEEEe
Q 042544 169 FDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQA-GFEVIWE 216 (305)
Q Consensus 169 fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~g-G~~~i~~ 216 (305)
+|+|+-.- .... .+....+.|+++ |.+++..
T Consensus 257 ~d~vid~~-----g~~~------------~~~~a~~~l~~~~G~~v~~g 288 (368)
T cd08300 257 VDYTFECI-----GNVK------------VMRAALEACHKGWGTSVIIG 288 (368)
T ss_pred CcEEEECC-----CChH------------HHHHHHHhhccCCCeEEEEc
Confidence 88887431 1111 477788899887 8877653
No 443
>PRK07890 short chain dehydrogenase; Provisional
Probab=61.49 E-value=64 Score=26.87 Aligned_cols=75 Identities=17% Similarity=0.087 Sum_probs=47.1
Q ss_pred CCCeEEEEcCCCChHHHHHHhh---cCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCC-C---------CC
Q 042544 100 SGQKVLDVGCGIGGPLREIAQF---SSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMP-F---------PD 166 (305)
Q Consensus 100 ~~~~vLDiGcG~G~~~~~l~~~---~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~-~---------~~ 166 (305)
++++||=.|++ |..+..+++. .+.+|+.++.++..++...+.+...+ .++.++..|+.+.. . .-
T Consensus 4 ~~k~vlItGa~-~~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~ 80 (258)
T PRK07890 4 KGKVVVVSGVG-PGLGRTLAVRAARAGADVVLAARTAERLDEVAAEIDDLG--RRALAVPTDITDEDQCANLVALALERF 80 (258)
T ss_pred CCCEEEEECCC-CcHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHhC--CceEEEecCCCCHHHHHHHHHHHHHHc
Confidence 45688877764 4455554421 37899999999877666555544332 35788999987521 0 01
Q ss_pred CCeeEEEeccc
Q 042544 167 NSFDAVYAIEA 177 (305)
Q Consensus 167 ~~fD~v~~~~~ 177 (305)
+..|.|+.+..
T Consensus 81 g~~d~vi~~ag 91 (258)
T PRK07890 81 GRVDALVNNAF 91 (258)
T ss_pred CCccEEEECCc
Confidence 45788877653
No 444
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=60.39 E-value=33 Score=33.03 Aligned_cols=80 Identities=13% Similarity=0.011 Sum_probs=48.6
Q ss_pred cCCCCCCeEEEEcCCCChHHHHHHhh---cCCeEEEEcCCHHHHHHHHHHHHhc-----CC--CCCeEEEEcCCCCCC-C
Q 042544 96 LGLKSGQKVLDVGCGIGGPLREIAQF---SSTSVTGLNNNEYQITRGKELNRFA-----GV--DKTCNFVKADFMKMP-F 164 (305)
Q Consensus 96 ~~~~~~~~vLDiGcG~G~~~~~l~~~---~~~~v~gvD~s~~~l~~a~~~~~~~-----~~--~~~~~~~~~d~~~~~-~ 164 (305)
++...+.+||=.|+ +|..+..+++. .+.+|++++.+...+....+.+... +. ..++.++.+|+.+.. +
T Consensus 75 ~~~~~gKvVLVTGA-TGgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~esI 153 (576)
T PLN03209 75 LDTKDEDLAFVAGA-TGKVGSRTVRELLKLGFRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQI 153 (576)
T ss_pred cccCCCCEEEEECC-CCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHHH
Confidence 34557778887765 46666665532 3789999998887665443332221 11 135789999998632 1
Q ss_pred --CCCCeeEEEecc
Q 042544 165 --PDNSFDAVYAIE 176 (305)
Q Consensus 165 --~~~~fD~v~~~~ 176 (305)
.-+..|+|+++.
T Consensus 154 ~~aLggiDiVVn~A 167 (576)
T PLN03209 154 GPALGNASVVICCI 167 (576)
T ss_pred HHHhcCCCEEEEcc
Confidence 114578888754
No 445
>cd08290 ETR 2-enoyl thioester reductase (ETR). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann f
Probab=60.14 E-value=24 Score=30.99 Aligned_cols=38 Identities=16% Similarity=0.370 Sum_probs=26.6
Q ss_pred cCCCCCCeEEEEcC--CCChHHHHHHhhcCCeEEEEcCCH
Q 042544 96 LGLKSGQKVLDVGC--GIGGPLREIAQFSSTSVTGLNNNE 133 (305)
Q Consensus 96 ~~~~~~~~vLDiGc--G~G~~~~~l~~~~~~~v~gvD~s~ 133 (305)
..+.++.+||=.|+ +.|..+..+++..+.+++.+.-+.
T Consensus 142 ~~~~~g~~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~~~ 181 (341)
T cd08290 142 VKLQPGDWVIQNGANSAVGQAVIQLAKLLGIKTINVVRDR 181 (341)
T ss_pred cccCCCCEEEEccchhHHHHHHHHHHHHcCCeEEEEEcCC
Confidence 45678889998875 456666677765678877776554
No 446
>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin
Probab=60.08 E-value=24 Score=30.83 Aligned_cols=91 Identities=12% Similarity=0.130 Sum_probs=52.3
Q ss_pred CCeEEEE--cC-CCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCC-----C-CCCCCeeE
Q 042544 101 GQKVLDV--GC-GIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKM-----P-FPDNSFDA 171 (305)
Q Consensus 101 ~~~vLDi--Gc-G~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~-----~-~~~~~fD~ 171 (305)
+.++|=+ |+ +.|..+..+++..+.+|++++.++...+.+++ .|.. .++..+-.++ . .+...+|+
T Consensus 143 ~~~vlv~~~g~g~vG~~a~q~a~~~G~~vi~~~~~~~~~~~~~~----~g~~---~~i~~~~~~~~~~v~~~~~~~~~d~ 215 (324)
T cd08291 143 GAKAVVHTAAASALGRMLVRLCKADGIKVINIVRRKEQVDLLKK----IGAE---YVLNSSDPDFLEDLKELIAKLNATI 215 (324)
T ss_pred CCcEEEEccCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH----cCCc---EEEECCCccHHHHHHHHhCCCCCcE
Confidence 4445444 43 35556666776668899999999988777765 2322 2222111111 0 12235788
Q ss_pred EEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 172 VYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 172 v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
|+-.- ... ......+.|+++|.++...
T Consensus 216 vid~~-----g~~-------------~~~~~~~~l~~~G~~v~~g 242 (324)
T cd08291 216 FFDAV-----GGG-------------LTGQILLAMPYGSTLYVYG 242 (324)
T ss_pred EEECC-----CcH-------------HHHHHHHhhCCCCEEEEEE
Confidence 87421 111 2455678889999987754
No 447
>PRK09186 flagellin modification protein A; Provisional
Probab=59.99 E-value=61 Score=26.95 Aligned_cols=76 Identities=14% Similarity=0.101 Sum_probs=45.3
Q ss_pred CCCeEEEEcCCCChHHHHHHh---hcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCC-----CC-----C
Q 042544 100 SGQKVLDVGCGIGGPLREIAQ---FSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMP-----FP-----D 166 (305)
Q Consensus 100 ~~~~vLDiGcG~G~~~~~l~~---~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~-----~~-----~ 166 (305)
++++||=.|++ |..+..+++ ..+.+|++++.++..++...+.+........+.++++|+.+.. +. -
T Consensus 3 ~~k~vlItGas-~giG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~ 81 (256)
T PRK09186 3 KGKTILITGAG-GLIGSALVKAILEAGGIVIAADIDKEALNELLESLGKEFKSKKLSLVELDITDQESLEEFLSKSAEKY 81 (256)
T ss_pred CCCEEEEECCC-chHHHHHHHHHHHCCCEEEEEecChHHHHHHHHHHHhhcCCCceeEEEecCCCHHHHHHHHHHHHHHc
Confidence 45788877764 445555442 2378999999888776655554432211234667788987621 11 1
Q ss_pred CCeeEEEecc
Q 042544 167 NSFDAVYAIE 176 (305)
Q Consensus 167 ~~fD~v~~~~ 176 (305)
+..|.|+.+.
T Consensus 82 ~~id~vi~~A 91 (256)
T PRK09186 82 GKIDGAVNCA 91 (256)
T ss_pred CCccEEEECC
Confidence 3478887654
No 448
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=59.87 E-value=71 Score=26.70 Aligned_cols=75 Identities=17% Similarity=0.147 Sum_probs=49.2
Q ss_pred CCCeEEEEcCCCChHHHHHHhh---cCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCC-C---------CC
Q 042544 100 SGQKVLDVGCGIGGPLREIAQF---SSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMP-F---------PD 166 (305)
Q Consensus 100 ~~~~vLDiGcG~G~~~~~l~~~---~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~-~---------~~ 166 (305)
+++++|=.| |+|..+..+++. .+.+|+.++.++..++...+.+...+ .++.++.+|+.+.. . ..
T Consensus 11 ~~k~ilItG-a~g~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~--~~~~~~~~Dl~d~~~i~~~~~~~~~~~ 87 (259)
T PRK08213 11 SGKTALVTG-GSRGLGLQIAEALGEAGARVVLSARKAEELEEAAAHLEALG--IDALWIAADVADEADIERLAEETLERF 87 (259)
T ss_pred CCCEEEEEC-CCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC--CeEEEEEccCCCHHHHHHHHHHHHHHh
Confidence 467889887 456666666532 37899999999887776665554332 35778899988632 1 01
Q ss_pred CCeeEEEeccc
Q 042544 167 NSFDAVYAIEA 177 (305)
Q Consensus 167 ~~fD~v~~~~~ 177 (305)
+.+|.|+.+..
T Consensus 88 ~~id~vi~~ag 98 (259)
T PRK08213 88 GHVDILVNNAG 98 (259)
T ss_pred CCCCEEEECCC
Confidence 35788876644
No 449
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=59.85 E-value=20 Score=26.90 Aligned_cols=64 Identities=20% Similarity=0.314 Sum_probs=34.2
Q ss_pred CCCeEEEEcCCCCh-HHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCC-CCCeeEEEecc
Q 042544 100 SGQKVLDVGCGIGG-PLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFP-DNSFDAVYAIE 176 (305)
Q Consensus 100 ~~~~vLDiGcG~G~-~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~fD~v~~~~ 176 (305)
+..+|+|+|-|.=. .+..|.+. +..|+++|+.+... +..+.++..|+.+.... =...|+|++..
T Consensus 13 ~~~kiVEVGiG~~~~vA~~L~~~-G~dV~~tDi~~~~a------------~~g~~~v~DDif~P~l~iY~~a~lIYSiR 78 (127)
T PF03686_consen 13 NYGKIVEVGIGFNPEVAKKLKER-GFDVIATDINPRKA------------PEGVNFVVDDIFNPNLEIYEGADLIYSIR 78 (127)
T ss_dssp -SSEEEEET-TT--HHHHHHHHH-S-EEEEE-SS-S----------------STTEE---SSS--HHHHTTEEEEEEES
T ss_pred CCCcEEEECcCCCHHHHHHHHHc-CCcEEEEECccccc------------ccCcceeeecccCCCHHHhcCCcEEEEeC
Confidence 34599999999654 34444454 79999999988711 13578999999873211 13578998764
No 450
>PF06690 DUF1188: Protein of unknown function (DUF1188); InterPro: IPR009573 This family consists of several hypothetical archaeal proteins of around 260 residues in length, which seem to be specific to Methanobacterium, Methanococcus and Methanopyrus species. The function of this family is unknown.
Probab=59.83 E-value=1.1e+02 Score=25.88 Aligned_cols=86 Identities=10% Similarity=0.018 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHHHcCCCCCCeEEEEcCC-CChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 042544 82 RESIKRHEHFLALQLGLKSGQKVLDVGCG-IGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFM 160 (305)
Q Consensus 82 ~~~~~~~~~~l~~~~~~~~~~~vLDiGcG-~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~ 160 (305)
....+.....+..++.-....++|=+|.= +|.+....... .++|+.+|+.|.+.+.. .+++.|...--
T Consensus 23 ~~I~ekKa~ai~~~le~~~~k~~lI~G~YltG~~iA~~L~~-~~eV~lvDI~p~lk~ll---------~~~i~F~~~~~- 91 (252)
T PF06690_consen 23 KEIAEKKANAIKYWLEGEEFKQALIFGAYLTGNFIASALSK-KCEVTLVDIHPHLKELL---------NENIKFMEFRN- 91 (252)
T ss_pred HHHHHHHHHHHHHHhcccccceEEEEEEEeehHHHHHHhcc-CceEEEEeCcHHHHHHh---------cCCCceeeccC-
Confidence 33344445555566655555688888853 44444443322 34999999999887653 34577763211
Q ss_pred CCCCCCCCeeEEEeccccccc
Q 042544 161 KMPFPDNSFDAVYAIEATCHA 181 (305)
Q Consensus 161 ~~~~~~~~fD~v~~~~~l~~~ 181 (305)
. ....+|+|+-.-.+.-+
T Consensus 92 ~---~~~~~DlIID~TGlGGv 109 (252)
T PF06690_consen 92 G---LEGNPDLIIDTTGLGGV 109 (252)
T ss_pred C---CCCCCCEEEECCCCCCC
Confidence 1 13468999865554444
No 451
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=59.72 E-value=68 Score=26.76 Aligned_cols=76 Identities=13% Similarity=0.099 Sum_probs=48.5
Q ss_pred CCCeEEEEcCCCChHHHHHHhh---cCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCC-----C-----CC
Q 042544 100 SGQKVLDVGCGIGGPLREIAQF---SSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMP-----F-----PD 166 (305)
Q Consensus 100 ~~~~vLDiGcG~G~~~~~l~~~---~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~-----~-----~~ 166 (305)
.+++||=.|+ +|..+..+++. .+.+|+.++.++..++...+.+...+ .++.++..|+.+.. + .-
T Consensus 9 ~~k~vlItGa-~g~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~ 85 (255)
T PRK07523 9 TGRRALVTGS-SQGIGYALAEGLAQAGAEVILNGRDPAKLAAAAESLKGQG--LSAHALAFDVTDHDAVRAAIDAFEAEI 85 (255)
T ss_pred CCCEEEEECC-cchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC--ceEEEEEccCCCHHHHHHHHHHHHHhc
Confidence 4678997775 55566665532 37899999999877766555554433 24778888887621 1 01
Q ss_pred CCeeEEEecccc
Q 042544 167 NSFDAVYAIEAT 178 (305)
Q Consensus 167 ~~fD~v~~~~~l 178 (305)
+..|.++.....
T Consensus 86 ~~~d~li~~ag~ 97 (255)
T PRK07523 86 GPIDILVNNAGM 97 (255)
T ss_pred CCCCEEEECCCC
Confidence 357888766543
No 452
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=59.71 E-value=29 Score=33.85 Aligned_cols=64 Identities=14% Similarity=0.136 Sum_probs=42.8
Q ss_pred CeEEEEcCCCChHHHHHHh---hcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCC----CCCCCeeEEEe
Q 042544 102 QKVLDVGCGIGGPLREIAQ---FSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMP----FPDNSFDAVYA 174 (305)
Q Consensus 102 ~~vLDiGcG~G~~~~~l~~---~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~fD~v~~ 174 (305)
.+|+=+|||. ++..+++ ..+..++.+|.++..++.+++. ...++.+|..+.. ..-+..|++++
T Consensus 401 ~~vII~G~Gr--~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~--------g~~v~~GDat~~~~L~~agi~~A~~vvv 470 (621)
T PRK03562 401 PRVIIAGFGR--FGQIVGRLLLSSGVKMTVLDHDPDHIETLRKF--------GMKVFYGDATRMDLLESAGAAKAEVLIN 470 (621)
T ss_pred CcEEEEecCh--HHHHHHHHHHhCCCCEEEEECCHHHHHHHHhc--------CCeEEEEeCCCHHHHHhcCCCcCCEEEE
Confidence 5777777773 4444432 2367999999999999887651 3578999998732 12245677765
Q ss_pred c
Q 042544 175 I 175 (305)
Q Consensus 175 ~ 175 (305)
.
T Consensus 471 ~ 471 (621)
T PRK03562 471 A 471 (621)
T ss_pred E
Confidence 3
No 453
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=59.38 E-value=67 Score=27.04 Aligned_cols=76 Identities=14% Similarity=0.088 Sum_probs=48.8
Q ss_pred CCCeEEEEcCCCCh---HHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCC-----C-----CC
Q 042544 100 SGQKVLDVGCGIGG---PLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMP-----F-----PD 166 (305)
Q Consensus 100 ~~~~vLDiGcG~G~---~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~-----~-----~~ 166 (305)
.+.++|=.|++.|. .+..+++. +.+|+.++.++..++...+.....+ .++.++.+|+.+.. + .-
T Consensus 9 ~~k~~lItGa~~~iG~~ia~~l~~~-G~~vv~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 85 (265)
T PRK07097 9 KGKIALITGASYGIGFAIAKAYAKA-GATIVFNDINQELVDKGLAAYRELG--IEAHGYVCDVTDEDGVQAMVSQIEKEV 85 (265)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHC-CCeEEEEeCCHHHHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHHhC
Confidence 45688888877553 23334443 7899999999887766655554432 35788899987521 0 01
Q ss_pred CCeeEEEecccc
Q 042544 167 NSFDAVYAIEAT 178 (305)
Q Consensus 167 ~~fD~v~~~~~l 178 (305)
+.+|.++.+...
T Consensus 86 ~~id~li~~ag~ 97 (265)
T PRK07097 86 GVIDILVNNAGI 97 (265)
T ss_pred CCCCEEEECCCC
Confidence 458988876543
No 454
>PRK07035 short chain dehydrogenase; Provisional
Probab=59.24 E-value=66 Score=26.73 Aligned_cols=75 Identities=17% Similarity=0.119 Sum_probs=46.2
Q ss_pred CCCeEEEEcCCCChHHHHHHh---hcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCC-----C-----CC
Q 042544 100 SGQKVLDVGCGIGGPLREIAQ---FSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMP-----F-----PD 166 (305)
Q Consensus 100 ~~~~vLDiGcG~G~~~~~l~~---~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~-----~-----~~ 166 (305)
++.+||=.|++.| .+..+++ ..+.+|+.++.++..++...+.+...+ .++.++..|+.+.. + .-
T Consensus 7 ~~k~vlItGas~g-IG~~l~~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~ 83 (252)
T PRK07035 7 TGKIALVTGASRG-IGEAIAKLLAQQGAHVIVSSRKLDGCQAVADAIVAAG--GKAEALACHIGEMEQIDALFAHIRERH 83 (252)
T ss_pred CCCEEEEECCCcH-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CeEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 3567888887755 3333332 137899999998877766555554332 34677888886531 0 01
Q ss_pred CCeeEEEeccc
Q 042544 167 NSFDAVYAIEA 177 (305)
Q Consensus 167 ~~fD~v~~~~~ 177 (305)
+++|+++....
T Consensus 84 ~~id~li~~ag 94 (252)
T PRK07035 84 GRLDILVNNAA 94 (252)
T ss_pred CCCCEEEECCC
Confidence 35798886543
No 455
>cd08297 CAD3 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=59.04 E-value=61 Score=28.46 Aligned_cols=100 Identities=25% Similarity=0.290 Sum_probs=59.8
Q ss_pred cCCCCCCeEEEEcCC--CChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCC-C--CCCCCCee
Q 042544 96 LGLKSGQKVLDVGCG--IGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMK-M--PFPDNSFD 170 (305)
Q Consensus 96 ~~~~~~~~vLDiGcG--~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~-~--~~~~~~fD 170 (305)
+.+.++.+||=.|+| .|..+..+++..+.+|+.+..++...+.+++ .+...-+.....+... + ..+...+|
T Consensus 161 ~~~~~~~~vlV~g~~~~vg~~~~~~a~~~g~~v~~~~~~~~~~~~~~~----~g~~~v~~~~~~~~~~~~~~~~~~~~vd 236 (341)
T cd08297 161 AGLKPGDWVVISGAGGGLGHLGVQYAKAMGLRVIAIDVGDEKLELAKE----LGADAFVDFKKSDDVEAVKELTGGGGAH 236 (341)
T ss_pred cCCCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHH----cCCcEEEcCCCccHHHHHHHHhcCCCCC
Confidence 467788899988875 5667777776668899999999877665533 2321000110001100 0 01234588
Q ss_pred EEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 171 AVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 171 ~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
+++.... ... .+..+.+.|+++|.++...
T Consensus 237 ~vl~~~~-----~~~------------~~~~~~~~l~~~g~~v~~g 265 (341)
T cd08297 237 AVVVTAV-----SAA------------AYEQALDYLRPGGTLVCVG 265 (341)
T ss_pred EEEEcCC-----chH------------HHHHHHHHhhcCCEEEEec
Confidence 8873211 011 4777889999999988753
No 456
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=58.72 E-value=24 Score=30.39 Aligned_cols=38 Identities=26% Similarity=0.364 Sum_probs=25.5
Q ss_pred eEEEEcCCC--ChHHHHHHhhcCCeEEEEcCCHHHHHHHHH
Q 042544 103 KVLDVGCGI--GGPLREIAQFSSTSVTGLNNNEYQITRGKE 141 (305)
Q Consensus 103 ~vLDiGcG~--G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~ 141 (305)
+|.=||+|. |.++..+.+. +.+|+++|.++..++.+.+
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~-g~~V~~~d~~~~~~~~a~~ 41 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSL-GHTVYGVSRRESTCERAIE 41 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHH
Confidence 456677774 2344444443 6799999999988776654
No 457
>PRK07454 short chain dehydrogenase; Provisional
Probab=58.55 E-value=86 Score=25.82 Aligned_cols=76 Identities=11% Similarity=-0.027 Sum_probs=47.7
Q ss_pred CCCeEEEEcCCCChHHHHHHhh---cCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCC-----CC-----C
Q 042544 100 SGQKVLDVGCGIGGPLREIAQF---SSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMP-----FP-----D 166 (305)
Q Consensus 100 ~~~~vLDiGcG~G~~~~~l~~~---~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~-----~~-----~ 166 (305)
..+++|=.|+ +|..+..+++. .+.+|++++.++...+...+..... ..++.++.+|+.+.. +. -
T Consensus 5 ~~k~vlItG~-sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 81 (241)
T PRK07454 5 SMPRALITGA-SSGIGKATALAFAKAGWDLALVARSQDALEALAAELRST--GVKAAAYSIDLSNPEAIAPGIAELLEQF 81 (241)
T ss_pred CCCEEEEeCC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhC--CCcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 4567887875 56665555532 3789999999887665554444332 236788999987632 11 1
Q ss_pred CCeeEEEecccc
Q 042544 167 NSFDAVYAIEAT 178 (305)
Q Consensus 167 ~~fD~v~~~~~l 178 (305)
+..|.++.+...
T Consensus 82 ~~id~lv~~ag~ 93 (241)
T PRK07454 82 GCPDVLINNAGM 93 (241)
T ss_pred CCCCEEEECCCc
Confidence 357888865543
No 458
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=58.50 E-value=72 Score=26.35 Aligned_cols=75 Identities=9% Similarity=0.067 Sum_probs=46.8
Q ss_pred CCCeEEEEcCCCChHHHHHHh---hcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCC-----CC-----C
Q 042544 100 SGQKVLDVGCGIGGPLREIAQ---FSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMP-----FP-----D 166 (305)
Q Consensus 100 ~~~~vLDiGcG~G~~~~~l~~---~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~-----~~-----~ 166 (305)
++.++|=.|++ |..+..+++ ..+.+|+.++.++..++.+.+.+... ..++.+++.|+.+.. +. -
T Consensus 4 ~~~~~lItG~~-g~iG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 80 (253)
T PRK08217 4 KDKVIVITGGA-QGLGRAMAEYLAQKGAKLALIDLNQEKLEEAVAECGAL--GTEVRGYAANVTDEEDVEATFAQIAEDF 80 (253)
T ss_pred CCCEEEEECCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCceEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 46789988864 444444442 23789999999987776655554433 235778888876521 00 1
Q ss_pred CCeeEEEeccc
Q 042544 167 NSFDAVYAIEA 177 (305)
Q Consensus 167 ~~fD~v~~~~~ 177 (305)
+.+|.|+....
T Consensus 81 ~~id~vi~~ag 91 (253)
T PRK08217 81 GQLNGLINNAG 91 (253)
T ss_pred CCCCEEEECCC
Confidence 45788887543
No 459
>PRK05866 short chain dehydrogenase; Provisional
Probab=58.43 E-value=68 Score=27.74 Aligned_cols=74 Identities=16% Similarity=0.154 Sum_probs=46.8
Q ss_pred CCeEEEEcCCCChHHHHHHh---hcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCC-----C-----CCC
Q 042544 101 GQKVLDVGCGIGGPLREIAQ---FSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMP-----F-----PDN 167 (305)
Q Consensus 101 ~~~vLDiGcG~G~~~~~l~~---~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~-----~-----~~~ 167 (305)
+.+||=.|++. ..+..+++ ..+.+|+.++.++..++...+.+...+ ..+.++.+|+.+.. + .-+
T Consensus 40 ~k~vlItGasg-gIG~~la~~La~~G~~Vi~~~R~~~~l~~~~~~l~~~~--~~~~~~~~Dl~d~~~v~~~~~~~~~~~g 116 (293)
T PRK05866 40 GKRILLTGASS-GIGEAAAEQFARRGATVVAVARREDLLDAVADRITRAG--GDAMAVPCDLSDLDAVDALVADVEKRIG 116 (293)
T ss_pred CCEEEEeCCCc-HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 46788777654 44444442 137899999999877766655544332 34778888987632 0 013
Q ss_pred CeeEEEeccc
Q 042544 168 SFDAVYAIEA 177 (305)
Q Consensus 168 ~fD~v~~~~~ 177 (305)
..|+++.+..
T Consensus 117 ~id~li~~AG 126 (293)
T PRK05866 117 GVDILINNAG 126 (293)
T ss_pred CCCEEEECCC
Confidence 6788887643
No 460
>PRK12829 short chain dehydrogenase; Provisional
Probab=58.34 E-value=74 Score=26.57 Aligned_cols=74 Identities=19% Similarity=0.124 Sum_probs=46.0
Q ss_pred CCCCeEEEEcCCCChHHHHHHhh---cCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCC-----CC-----
Q 042544 99 KSGQKVLDVGCGIGGPLREIAQF---SSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMP-----FP----- 165 (305)
Q Consensus 99 ~~~~~vLDiGcG~G~~~~~l~~~---~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~-----~~----- 165 (305)
-++.++|=.|++ |..+..+++. .+.+|++++.++..++...+.... .++.++.+|+.+.. +.
T Consensus 9 ~~~~~vlItGa~-g~iG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~----~~~~~~~~D~~~~~~~~~~~~~~~~~ 83 (264)
T PRK12829 9 LDGLRVLVTGGA-SGIGRAIAEAFAEAGARVHVCDVSEAALAATAARLPG----AKVTATVADVADPAQVERVFDTAVER 83 (264)
T ss_pred cCCCEEEEeCCC-CcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhc----CceEEEEccCCCHHHHHHHHHHHHHH
Confidence 366899988775 5555555432 378999999988766544333221 14678888887632 10
Q ss_pred CCCeeEEEeccc
Q 042544 166 DNSFDAVYAIEA 177 (305)
Q Consensus 166 ~~~fD~v~~~~~ 177 (305)
.+.+|.|+....
T Consensus 84 ~~~~d~vi~~ag 95 (264)
T PRK12829 84 FGGLDVLVNNAG 95 (264)
T ss_pred hCCCCEEEECCC
Confidence 135798886543
No 461
>cd08244 MDR_enoyl_red Possible enoyl reductase. Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydr
Probab=58.21 E-value=56 Score=28.28 Aligned_cols=97 Identities=20% Similarity=0.211 Sum_probs=59.7
Q ss_pred HcCCCCCCeEEEEcC--CCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCC----C--CCCC
Q 042544 95 QLGLKSGQKVLDVGC--GIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMK----M--PFPD 166 (305)
Q Consensus 95 ~~~~~~~~~vLDiGc--G~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~----~--~~~~ 166 (305)
...+.++.+||=.|+ +.|..+..+++..+.+|++++.++...+.+++ .+.. .++...-.. + ..+.
T Consensus 137 ~~~~~~~~~vlI~g~~~~~g~~~~~la~~~g~~v~~~~~~~~~~~~~~~----~g~~---~~~~~~~~~~~~~~~~~~~~ 209 (324)
T cd08244 137 LATLTPGDVVLVTAAAGGLGSLLVQLAKAAGATVVGAAGGPAKTALVRA----LGAD---VAVDYTRPDWPDQVREALGG 209 (324)
T ss_pred hcCCCCCCEEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH----cCCC---EEEecCCccHHHHHHHHcCC
Confidence 456677888888874 45667777776668999999998887776643 2321 112111001 0 0122
Q ss_pred CCeeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 167 NSFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 167 ~~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
..+|+|+.... .. ....+.+.|+++|.++...
T Consensus 210 ~~~d~vl~~~g-----~~-------------~~~~~~~~l~~~g~~v~~g 241 (324)
T cd08244 210 GGVTVVLDGVG-----GA-------------IGRAALALLAPGGRFLTYG 241 (324)
T ss_pred CCceEEEECCC-----hH-------------hHHHHHHHhccCcEEEEEe
Confidence 45888875421 11 2577889999999887653
No 462
>PRK09072 short chain dehydrogenase; Provisional
Probab=58.20 E-value=68 Score=26.93 Aligned_cols=75 Identities=12% Similarity=0.091 Sum_probs=46.5
Q ss_pred CCCeEEEEcCCCChHHHHHHh---hcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCC-----C----CCC
Q 042544 100 SGQKVLDVGCGIGGPLREIAQ---FSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMP-----F----PDN 167 (305)
Q Consensus 100 ~~~~vLDiGcG~G~~~~~l~~---~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~-----~----~~~ 167 (305)
++.++|=.|++.| .+..+++ ..+.+|++++.++..++.....+. ...++.++..|+.+.. + ..+
T Consensus 4 ~~~~vlItG~s~~-iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~---~~~~~~~~~~D~~d~~~~~~~~~~~~~~~ 79 (263)
T PRK09072 4 KDKRVLLTGASGG-IGQALAEALAAAGARLLLVGRNAEKLEALAARLP---YPGRHRWVVADLTSEAGREAVLARAREMG 79 (263)
T ss_pred CCCEEEEECCCch-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHh---cCCceEEEEccCCCHHHHHHHHHHHHhcC
Confidence 3567887776643 4444332 137899999999877765554431 1346888888987632 0 014
Q ss_pred CeeEEEecccc
Q 042544 168 SFDAVYAIEAT 178 (305)
Q Consensus 168 ~fD~v~~~~~l 178 (305)
..|.++.....
T Consensus 80 ~id~lv~~ag~ 90 (263)
T PRK09072 80 GINVLINNAGV 90 (263)
T ss_pred CCCEEEECCCC
Confidence 57888876543
No 463
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=58.11 E-value=40 Score=26.61 Aligned_cols=107 Identities=17% Similarity=0.072 Sum_probs=53.1
Q ss_pred EcCCCChHHHHHHhh-c-CCeEEEE--cCCHHHHHHH---HHHHHhcCCCCCeEE-EEcCCCCCC----CCCCCeeEEEe
Q 042544 107 VGCGIGGPLREIAQF-S-STSVTGL--NNNEYQITRG---KELNRFAGVDKTCNF-VKADFMKMP----FPDNSFDAVYA 174 (305)
Q Consensus 107 iGcG~G~~~~~l~~~-~-~~~v~gv--D~s~~~l~~a---~~~~~~~~~~~~~~~-~~~d~~~~~----~~~~~fD~v~~ 174 (305)
||=|.=.++..|++. . +..+++. |......+.- ..++..... .++.+ .-.|+..+. ...+.||.|+.
T Consensus 3 vGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~-~g~~V~~~VDat~l~~~~~~~~~~FDrIiF 81 (166)
T PF10354_consen 3 VGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRE-LGVTVLHGVDATKLHKHFRLKNQRFDRIIF 81 (166)
T ss_pred eeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhh-cCCccccCCCCCcccccccccCCcCCEEEE
Confidence 444444555566643 3 4456554 4443333322 233333311 12333 334666543 34688999986
Q ss_pred cccccccCC-----hhhhhhcCCCCCcccHHHHHHHHHhCCceEEEec
Q 042544 175 IEATCHAPD-----AAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWEK 217 (305)
Q Consensus 175 ~~~l~~~~~-----~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~~ 217 (305)
++. |... ...+..-..+ -..++..+..+|+++|.+.|.-.
T Consensus 82 NFP--H~G~~~~~~~~~i~~nr~L-l~~Ff~Sa~~~L~~~G~IhVTl~ 126 (166)
T PF10354_consen 82 NFP--HVGGGSEDGKRNIRLNREL-LRGFFKSASQLLKPDGEIHVTLK 126 (166)
T ss_pred eCC--CCCCCccchhHHHHHHHHH-HHHHHHHHHHhcCCCCEEEEEeC
Confidence 643 3320 1110000000 01268889999999999988753
No 464
>PTZ00354 alcohol dehydrogenase; Provisional
Probab=58.11 E-value=49 Score=28.76 Aligned_cols=98 Identities=15% Similarity=0.162 Sum_probs=59.3
Q ss_pred cCCCCCCeEEEEcC--CCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcC-CCC-C--CCCCCCe
Q 042544 96 LGLKSGQKVLDVGC--GIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKAD-FMK-M--PFPDNSF 169 (305)
Q Consensus 96 ~~~~~~~~vLDiGc--G~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d-~~~-~--~~~~~~f 169 (305)
..+.++.+||=.|+ +.|..+..+++..+..++.+..++...+.+++ .+...-+.....+ ... + ..+...+
T Consensus 136 ~~~~~~~~vlI~ga~g~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (334)
T PTZ00354 136 GDVKKGQSVLIHAGASGVGTAAAQLAEKYGAATIITTSSEEKVDFCKK----LAAIILIRYPDEEGFAPKVKKLTGEKGV 211 (334)
T ss_pred cCCCCCCEEEEEcCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH----cCCcEEEecCChhHHHHHHHHHhCCCCc
Confidence 45677889998874 46777777776668888888888888777643 2321111111111 100 0 0123458
Q ss_pred eEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEE
Q 042544 170 DAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIW 215 (305)
Q Consensus 170 D~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~ 215 (305)
|+++.... .. .+..+.+.|+++|.++..
T Consensus 212 d~~i~~~~-----~~-------------~~~~~~~~l~~~g~~i~~ 239 (334)
T PTZ00354 212 NLVLDCVG-----GS-------------YLSETAEVLAVDGKWIVY 239 (334)
T ss_pred eEEEECCc-----hH-------------HHHHHHHHhccCCeEEEE
Confidence 88875321 11 477788999999998764
No 465
>PRK08862 short chain dehydrogenase; Provisional
Probab=58.11 E-value=70 Score=26.43 Aligned_cols=74 Identities=9% Similarity=-0.050 Sum_probs=48.2
Q ss_pred CCCeEEEEcCCCCh---HHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCC-----C----C-C
Q 042544 100 SGQKVLDVGCGIGG---PLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMP-----F----P-D 166 (305)
Q Consensus 100 ~~~~vLDiGcG~G~---~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~-----~----~-~ 166 (305)
.+.++|=.|++.|. .+..+++ .+.+|+.++.++..++...+.+...+ ..+.....|+.+.. + . -
T Consensus 4 ~~k~~lVtGas~GIG~aia~~la~-~G~~V~~~~r~~~~l~~~~~~i~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~ 80 (227)
T PRK08862 4 KSSIILITSAGSVLGRTISCHFAR-LGATLILCDQDQSALKDTYEQCSALT--DNVYSFQLKDFSQESIRHLFDAIEQQF 80 (227)
T ss_pred CCeEEEEECCccHHHHHHHHHHHH-CCCEEEEEcCCHHHHHHHHHHHHhcC--CCeEEEEccCCCHHHHHHHHHHHHHHh
Confidence 45789988888775 3334444 48899999999988877666555433 23566667776521 0 1 1
Q ss_pred C-CeeEEEecc
Q 042544 167 N-SFDAVYAIE 176 (305)
Q Consensus 167 ~-~fD~v~~~~ 176 (305)
+ .+|+++.+.
T Consensus 81 g~~iD~li~na 91 (227)
T PRK08862 81 NRAPDVLVNNW 91 (227)
T ss_pred CCCCCEEEECC
Confidence 3 689888765
No 466
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=58.05 E-value=44 Score=29.20 Aligned_cols=77 Identities=14% Similarity=0.194 Sum_probs=44.4
Q ss_pred CCCeEEEEcCCCChHHHHHHhh---cCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCC-C--CCCeeEEE
Q 042544 100 SGQKVLDVGCGIGGPLREIAQF---SSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPF-P--DNSFDAVY 173 (305)
Q Consensus 100 ~~~~vLDiGcG~G~~~~~l~~~---~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~-~--~~~fD~v~ 173 (305)
.+++||=.| |+|..+..+++. .+.+|+++..++.............+...+++++.+|+.+... . -..+|+|+
T Consensus 4 ~~k~vlVtG-~~G~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vi 82 (325)
T PLN02989 4 GGKVVCVTG-ASGYIASWIVKLLLFRGYTINATVRDPKDRKKTDHLLALDGAKERLKLFKADLLDEGSFELAIDGCETVF 82 (325)
T ss_pred CCCEEEEEC-CchHHHHHHHHHHHHCCCEEEEEEcCCcchhhHHHHHhccCCCCceEEEeCCCCCchHHHHHHcCCCEEE
Confidence 467888777 567777776632 3678888766654433322222111222468889999976321 0 12468777
Q ss_pred eccc
Q 042544 174 AIEA 177 (305)
Q Consensus 174 ~~~~ 177 (305)
....
T Consensus 83 h~A~ 86 (325)
T PLN02989 83 HTAS 86 (325)
T ss_pred EeCC
Confidence 6544
No 467
>PRK06197 short chain dehydrogenase; Provisional
Probab=57.76 E-value=74 Score=27.54 Aligned_cols=78 Identities=14% Similarity=0.013 Sum_probs=47.8
Q ss_pred CCCeEEEEcCCCChHHHHHHh---hcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCC-----C-----CC
Q 042544 100 SGQKVLDVGCGIGGPLREIAQ---FSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMP-----F-----PD 166 (305)
Q Consensus 100 ~~~~vLDiGcG~G~~~~~l~~---~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~-----~-----~~ 166 (305)
.+++||=.|+ +|..+..+++ ..+.+|+.++.++...+.+.+.+.......++.++..|+.+.. + .-
T Consensus 15 ~~k~vlItGa-s~gIG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~ 93 (306)
T PRK06197 15 SGRVAVVTGA-NTGLGYETAAALAAKGAHVVLAVRNLDKGKAAAARITAATPGADVTLQELDLTSLASVRAAADALRAAY 93 (306)
T ss_pred CCCEEEEcCC-CCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEECCCCCHHHHHHHHHHHHhhC
Confidence 4678886665 4555555553 1378999999887766655444433211235788899987632 0 01
Q ss_pred CCeeEEEecccc
Q 042544 167 NSFDAVYAIEAT 178 (305)
Q Consensus 167 ~~fD~v~~~~~l 178 (305)
+.+|+++.+...
T Consensus 94 ~~iD~li~nAg~ 105 (306)
T PRK06197 94 PRIDLLINNAGV 105 (306)
T ss_pred CCCCEEEECCcc
Confidence 358988876543
No 468
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=57.64 E-value=30 Score=30.96 Aligned_cols=101 Identities=21% Similarity=0.290 Sum_probs=57.9
Q ss_pred HcCCCCCCeEEEEcCC-CChHHHHHHhhcCC-eEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCC--CC-C-CCCCCC
Q 042544 95 QLGLKSGQKVLDVGCG-IGGPLREIAQFSST-SVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADF--MK-M-PFPDNS 168 (305)
Q Consensus 95 ~~~~~~~~~vLDiGcG-~G~~~~~l~~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~--~~-~-~~~~~~ 168 (305)
...+.++.+||=+|+| .|..+..+++..+. +|+++|.++..++.+++. |...-+.....+. .. + ......
T Consensus 179 ~~~~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~~~~~----ga~~~i~~~~~~~~~~~~~~~~~~~g 254 (365)
T cd08277 179 TAKVEPGSTVAVFGLGAVGLSAIMGAKIAGASRIIGVDINEDKFEKAKEF----GATDFINPKDSDKPVSEVIREMTGGG 254 (365)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHc----CCCcEeccccccchHHHHHHHHhCCC
Confidence 4567788999988875 33445555655576 799999999888877542 3211111111000 00 0 011235
Q ss_pred eeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhC-CceEEEe
Q 042544 169 FDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQA-GFEVIWE 216 (305)
Q Consensus 169 fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~g-G~~~i~~ 216 (305)
+|+|+-.- .... .+....+.|+++ |.+++..
T Consensus 255 ~d~vid~~-----g~~~------------~~~~~~~~l~~~~G~~v~~g 286 (365)
T cd08277 255 VDYSFECT-----GNAD------------LMNEALESTKLGWGVSVVVG 286 (365)
T ss_pred CCEEEECC-----CChH------------HHHHHHHhcccCCCEEEEEc
Confidence 78887421 1111 477788899886 8887754
No 469
>PLN02702 L-idonate 5-dehydrogenase
Probab=57.62 E-value=1.4e+02 Score=26.56 Aligned_cols=101 Identities=17% Similarity=0.196 Sum_probs=57.8
Q ss_pred HcCCCCCCeEEEEcCC-CChHHHHHHhhcCC-eEEEEcCCHHHHHHHHHHHHhcCCCCCeEEE--EcCCCC----CC-CC
Q 042544 95 QLGLKSGQKVLDVGCG-IGGPLREIAQFSST-SVTGLNNNEYQITRGKELNRFAGVDKTCNFV--KADFMK----MP-FP 165 (305)
Q Consensus 95 ~~~~~~~~~vLDiGcG-~G~~~~~l~~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~--~~d~~~----~~-~~ 165 (305)
...+.++.+||=+|+| .|..+..+++..+. .++++|.++...+.+++. +....+.+. ..+... +. ..
T Consensus 176 ~~~~~~g~~vlI~g~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~----g~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (364)
T PLN02702 176 RANIGPETNVLVMGAGPIGLVTMLAARAFGAPRIVIVDVDDERLSVAKQL----GADEIVLVSTNIEDVESEVEEIQKAM 251 (364)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh----CCCEEEecCcccccHHHHHHHHhhhc
Confidence 4567788899988764 34555666655565 588999988777765542 322111110 011110 00 11
Q ss_pred CCCeeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 166 DNSFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 166 ~~~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
.+.+|+|+.. ..... .+....+.|+++|.++...
T Consensus 252 ~~~~d~vid~-----~g~~~------------~~~~~~~~l~~~G~~v~~g 285 (364)
T PLN02702 252 GGGIDVSFDC-----VGFNK------------TMSTALEATRAGGKVCLVG 285 (364)
T ss_pred CCCCCEEEEC-----CCCHH------------HHHHHHHHHhcCCEEEEEc
Confidence 2357887643 11111 4788899999999987654
No 470
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=57.49 E-value=52 Score=27.39 Aligned_cols=64 Identities=20% Similarity=0.163 Sum_probs=41.3
Q ss_pred eEEEEcCCCChHHHHHHhh---cCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCC----CCCCCeeEEEe
Q 042544 103 KVLDVGCGIGGPLREIAQF---SSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMP----FPDNSFDAVYA 174 (305)
Q Consensus 103 ~vLDiGcG~G~~~~~l~~~---~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~fD~v~~ 174 (305)
+++=+|||. ++..+++. .+..|+.+|.++..++..... ...+..+++|..+.. ..-..+|++++
T Consensus 2 ~iiIiG~G~--vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~------~~~~~~v~gd~t~~~~L~~agi~~aD~vva 72 (225)
T COG0569 2 KIIIIGAGR--VGRSVARELSEEGHNVVLIDRDEERVEEFLAD------ELDTHVVIGDATDEDVLEEAGIDDADAVVA 72 (225)
T ss_pred EEEEECCcH--HHHHHHHHHHhCCCceEEEEcCHHHHHHHhhh------hcceEEEEecCCCHHHHHhcCCCcCCEEEE
Confidence 566678773 44444432 368999999999888763321 124788899987621 22355888775
No 471
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=57.38 E-value=72 Score=26.65 Aligned_cols=75 Identities=11% Similarity=-0.125 Sum_probs=44.4
Q ss_pred CeEEEEcCCCChHHHHHHh---hcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCC-----C-----CCCC
Q 042544 102 QKVLDVGCGIGGPLREIAQ---FSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMP-----F-----PDNS 168 (305)
Q Consensus 102 ~~vLDiGcG~G~~~~~l~~---~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~-----~-----~~~~ 168 (305)
.+||=.|++ |..+..+++ ..+.+|+.+|.++..++...+.+.......++.++..|+.+.. + .-+.
T Consensus 3 k~ilItG~~-~~IG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~~~ 81 (259)
T PRK12384 3 QVAVVIGGG-QTLGAFLCHGLAEEGYRVAVADINSEKAANVAQEINAEYGEGMAYGFGADATSEQSVLALSRGVDEIFGR 81 (259)
T ss_pred CEEEEECCC-cHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhcCCceeEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 468877754 555554442 1378999999988766554443332211135788888987521 0 0145
Q ss_pred eeEEEeccc
Q 042544 169 FDAVYAIEA 177 (305)
Q Consensus 169 fD~v~~~~~ 177 (305)
.|.|+....
T Consensus 82 id~vv~~ag 90 (259)
T PRK12384 82 VDLLVYNAG 90 (259)
T ss_pred CCEEEECCC
Confidence 788776543
No 472
>cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2. Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical
Probab=57.35 E-value=1.2e+02 Score=26.56 Aligned_cols=96 Identities=17% Similarity=0.188 Sum_probs=54.1
Q ss_pred cCCCCCCeEEEEcCC-CChHHHHHHhhcCC-eEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCC------CCCCC
Q 042544 96 LGLKSGQKVLDVGCG-IGGPLREIAQFSST-SVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKM------PFPDN 167 (305)
Q Consensus 96 ~~~~~~~~vLDiGcG-~G~~~~~l~~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~------~~~~~ 167 (305)
..+.++.+||=.|+| .|..+..+++..+. ++++++.++...+.+.+ .|. ..+..+-.++ -.+..
T Consensus 163 ~~~~~~~~vlI~g~g~vg~~~~~~a~~~g~~~v~~~~~~~~~~~~~~~----~g~----~~~~~~~~~~~~~l~~~~~~~ 234 (344)
T cd08284 163 AQVRPGDTVAVIGCGPVGLCAVLSAQVLGAARVFAVDPVPERLERAAA----LGA----EPINFEDAEPVERVREATEGR 234 (344)
T ss_pred cCCccCCEEEEECCcHHHHHHHHHHHHcCCceEEEEcCCHHHHHHHHH----hCC----eEEecCCcCHHHHHHHHhCCC
Confidence 455678888877653 23344445555575 89999888766665544 232 1111111111 01234
Q ss_pred CeeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 168 SFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 168 ~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
.+|+++..- .... .+....+.|+++|.++...
T Consensus 235 ~~dvvid~~-----~~~~------------~~~~~~~~l~~~g~~v~~g 266 (344)
T cd08284 235 GADVVLEAV-----GGAA------------ALDLAFDLVRPGGVISSVG 266 (344)
T ss_pred CCCEEEECC-----CCHH------------HHHHHHHhcccCCEEEEEC
Confidence 588887431 1111 3777889999999877643
No 473
>PRK06949 short chain dehydrogenase; Provisional
Probab=57.26 E-value=83 Score=26.16 Aligned_cols=76 Identities=13% Similarity=0.097 Sum_probs=48.2
Q ss_pred CCCeEEEEcCCCChHHHHHHh---hcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCC-----C-----CC
Q 042544 100 SGQKVLDVGCGIGGPLREIAQ---FSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMP-----F-----PD 166 (305)
Q Consensus 100 ~~~~vLDiGcG~G~~~~~l~~---~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~-----~-----~~ 166 (305)
.+.+||=.| |+|..+..+++ ..+.+|++++.++..++.....+... ..++.++..|+.+.. + ..
T Consensus 8 ~~k~ilItG-asg~IG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 84 (258)
T PRK06949 8 EGKVALVTG-ASSGLGARFAQVLAQAGAKVVLASRRVERLKELRAEIEAE--GGAAHVVSLDVTDYQSIKAAVAHAETEA 84 (258)
T ss_pred CCCEEEEEC-CCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCcEEEEEecCCCHHHHHHHHHHHHHhc
Confidence 467888787 45555555553 23789999999988776665544333 235788888886521 0 01
Q ss_pred CCeeEEEecccc
Q 042544 167 NSFDAVYAIEAT 178 (305)
Q Consensus 167 ~~fD~v~~~~~l 178 (305)
+..|+++.+...
T Consensus 85 ~~~d~li~~ag~ 96 (258)
T PRK06949 85 GTIDILVNNSGV 96 (258)
T ss_pred CCCCEEEECCCC
Confidence 357888876543
No 474
>PRK06125 short chain dehydrogenase; Provisional
Probab=56.62 E-value=83 Score=26.31 Aligned_cols=76 Identities=13% Similarity=0.048 Sum_probs=47.1
Q ss_pred CCCeEEEEcCCCChHHHHHHh---hcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCC-----C-CCCCee
Q 042544 100 SGQKVLDVGCGIGGPLREIAQ---FSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMP-----F-PDNSFD 170 (305)
Q Consensus 100 ~~~~vLDiGcG~G~~~~~l~~---~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~-----~-~~~~fD 170 (305)
.++++|=.|++.| .+..++. ..+++|++++.++..++...+.+.... ..++.++..|+.+.. + .-+..|
T Consensus 6 ~~k~vlItG~~~g-iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~D~~~~~~~~~~~~~~g~id 83 (259)
T PRK06125 6 AGKRVLITGASKG-IGAAAAEAFAAEGCHLHLVARDADALEALAADLRAAH-GVDVAVHALDLSSPEAREQLAAEAGDID 83 (259)
T ss_pred CCCEEEEeCCCch-HHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhc-CCceEEEEecCCCHHHHHHHHHHhCCCC
Confidence 3578888886544 4444442 237899999999887766555444321 235778888886521 0 124678
Q ss_pred EEEeccc
Q 042544 171 AVYAIEA 177 (305)
Q Consensus 171 ~v~~~~~ 177 (305)
.++.+..
T Consensus 84 ~lv~~ag 90 (259)
T PRK06125 84 ILVNNAG 90 (259)
T ss_pred EEEECCC
Confidence 8876543
No 475
>PRK07102 short chain dehydrogenase; Provisional
Probab=56.06 E-value=71 Score=26.40 Aligned_cols=73 Identities=15% Similarity=0.077 Sum_probs=44.4
Q ss_pred CeEEEEcCCCChHHHHHHhh---cCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCC-------CCCCeeE
Q 042544 102 QKVLDVGCGIGGPLREIAQF---SSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPF-------PDNSFDA 171 (305)
Q Consensus 102 ~~vLDiGcG~G~~~~~l~~~---~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~-------~~~~fD~ 171 (305)
++||=.|+ +|..+..+++. .+.+|++++.++.-.+...+.+...+ ..++.++++|+.+..- -...+|.
T Consensus 2 ~~vlItGa-s~giG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~~~~~~~~~~~~~~~~~d~ 79 (243)
T PRK07102 2 KKILIIGA-TSDIARACARRYAAAGARLYLAARDVERLERLADDLRARG-AVAVSTHELDILDTASHAAFLDSLPALPDI 79 (243)
T ss_pred cEEEEEcC-CcHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhc-CCeEEEEecCCCChHHHHHHHHHHhhcCCE
Confidence 46786775 45555555532 37899999998876654444433322 2368899999876320 0124688
Q ss_pred EEecc
Q 042544 172 VYAIE 176 (305)
Q Consensus 172 v~~~~ 176 (305)
++...
T Consensus 80 vv~~a 84 (243)
T PRK07102 80 VLIAV 84 (243)
T ss_pred EEECC
Confidence 87543
No 476
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=56.03 E-value=47 Score=30.73 Aligned_cols=67 Identities=18% Similarity=0.064 Sum_probs=44.3
Q ss_pred CCeEEEEcCCCChHHHHHHhh---cCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCC----CCCCCeeEEE
Q 042544 101 GQKVLDVGCGIGGPLREIAQF---SSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMP----FPDNSFDAVY 173 (305)
Q Consensus 101 ~~~vLDiGcG~G~~~~~l~~~---~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~fD~v~ 173 (305)
..+|+=+|| |..+..+++. .+..|+.+|.++..++..++.. ..+.++.+|..+.. ..-..+|.|+
T Consensus 231 ~~~iiIiG~--G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~------~~~~~i~gd~~~~~~L~~~~~~~a~~vi 302 (453)
T PRK09496 231 VKRVMIVGG--GNIGYYLAKLLEKEGYSVKLIERDPERAEELAEEL------PNTLVLHGDGTDQELLEEEGIDEADAFI 302 (453)
T ss_pred CCEEEEECC--CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHC------CCCeEEECCCCCHHHHHhcCCccCCEEE
Confidence 467777777 5666666632 3689999999999887665531 24678889986521 1224577776
Q ss_pred ec
Q 042544 174 AI 175 (305)
Q Consensus 174 ~~ 175 (305)
+.
T Consensus 303 ~~ 304 (453)
T PRK09496 303 AL 304 (453)
T ss_pred EC
Confidence 53
No 477
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=55.89 E-value=33 Score=27.46 Aligned_cols=41 Identities=20% Similarity=0.191 Sum_probs=26.5
Q ss_pred EEEEcCCCChH--HHHHHhhcCCeEEEEcCCHHHHHHHHHHHHh
Q 042544 104 VLDVGCGIGGP--LREIAQFSSTSVTGLNNNEYQITRGKELNRF 145 (305)
Q Consensus 104 vLDiGcG~G~~--~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~ 145 (305)
|.=||+|+=.- +..++. .+.+|+.+|.++..++.+++++..
T Consensus 2 V~ViGaG~mG~~iA~~~a~-~G~~V~l~d~~~~~l~~~~~~i~~ 44 (180)
T PF02737_consen 2 VAVIGAGTMGRGIAALFAR-AGYEVTLYDRSPEALERARKRIER 44 (180)
T ss_dssp EEEES-SHHHHHHHHHHHH-TTSEEEEE-SSHHHHHHHHHHHHH
T ss_pred EEEEcCCHHHHHHHHHHHh-CCCcEEEEECChHHHHhhhhHHHH
Confidence 45577765332 222233 489999999999999988777654
No 478
>PRK07478 short chain dehydrogenase; Provisional
Probab=55.87 E-value=89 Score=26.00 Aligned_cols=76 Identities=14% Similarity=0.102 Sum_probs=47.5
Q ss_pred CCCeEEEEcCCCChHHHHHHh---hcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCC-----CC-----C
Q 042544 100 SGQKVLDVGCGIGGPLREIAQ---FSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMP-----FP-----D 166 (305)
Q Consensus 100 ~~~~vLDiGcG~G~~~~~l~~---~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~-----~~-----~ 166 (305)
++.++|=.|++.| .+..+++ ..+.+|+.++.++..++...+.+...+ .++.++..|+.+.. +. -
T Consensus 5 ~~k~~lItGas~g-iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~ 81 (254)
T PRK07478 5 NGKVAIITGASSG-IGRAAAKLFAREGAKVVVGARRQAELDQLVAEIRAEG--GEAVALAGDVRDEAYAKALVALAVERF 81 (254)
T ss_pred CCCEEEEeCCCCh-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHhc
Confidence 3567887776544 4444432 137899999998887776665554433 35778888887531 10 1
Q ss_pred CCeeEEEecccc
Q 042544 167 NSFDAVYAIEAT 178 (305)
Q Consensus 167 ~~fD~v~~~~~l 178 (305)
+..|.++.+...
T Consensus 82 ~~id~li~~ag~ 93 (254)
T PRK07478 82 GGLDIAFNNAGT 93 (254)
T ss_pred CCCCEEEECCCC
Confidence 367888766543
No 479
>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases. yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH
Probab=55.79 E-value=44 Score=29.04 Aligned_cols=92 Identities=14% Similarity=0.150 Sum_probs=55.0
Q ss_pred CCCeEEEEcC--CCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEc-CC--CCC-CCCCCCeeEEE
Q 042544 100 SGQKVLDVGC--GIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKA-DF--MKM-PFPDNSFDAVY 173 (305)
Q Consensus 100 ~~~~vLDiGc--G~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~-d~--~~~-~~~~~~fD~v~ 173 (305)
++.+||=.|+ +.|..+..+++..+.+|+.++.++...+.+++ .|.. .++.. +. ..+ ......+|+|+
T Consensus 146 ~~~~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~~~~~~~~~~~----~g~~---~v~~~~~~~~~~~~~~~~~~~d~vl 218 (326)
T cd08289 146 EQGPVLVTGATGGVGSLAVSILAKLGYEVVASTGKADAADYLKK----LGAK---EVIPREELQEESIKPLEKQRWAGAV 218 (326)
T ss_pred CCCEEEEEcCCchHHHHHHHHHHHCCCeEEEEecCHHHHHHHHH----cCCC---EEEcchhHHHHHHHhhccCCcCEEE
Confidence 4568888887 34556666676568899999999887776643 2321 11111 10 000 11234578776
Q ss_pred ecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 174 AIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 174 ~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
... ... .+....+.|+++|.++...
T Consensus 219 d~~-----g~~-------------~~~~~~~~l~~~G~~i~~g 243 (326)
T cd08289 219 DPV-----GGK-------------TLAYLLSTLQYGGSVAVSG 243 (326)
T ss_pred ECC-----cHH-------------HHHHHHHHhhcCCEEEEEe
Confidence 431 111 3777889999999987764
No 480
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=55.47 E-value=79 Score=26.10 Aligned_cols=75 Identities=20% Similarity=0.090 Sum_probs=45.8
Q ss_pred CCCeEEEEcCCCChHHHHHHh---hcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCC-C---------CC
Q 042544 100 SGQKVLDVGCGIGGPLREIAQ---FSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMP-F---------PD 166 (305)
Q Consensus 100 ~~~~vLDiGcG~G~~~~~l~~---~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~-~---------~~ 166 (305)
++.+||=+|+. |..+..+++ ..+.+|++++.++..++.....+.. ..++.++.+|+.+.. + ..
T Consensus 4 ~~~~vlItGas-g~iG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 79 (251)
T PRK07231 4 EGKVAIVTGAS-SGIGEGIARRFAAEGARVVVTDRNEEAAERVAAEILA---GGRAIAVAADVSDEADVEAAVAAALERF 79 (251)
T ss_pred CCcEEEEECCC-ChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhc---CCeEEEEECCCCCHHHHHHHHHHHHHHh
Confidence 35678877654 444444442 1378999999998776655444332 235788899987622 0 01
Q ss_pred CCeeEEEecccc
Q 042544 167 NSFDAVYAIEAT 178 (305)
Q Consensus 167 ~~fD~v~~~~~l 178 (305)
+.+|+|+.....
T Consensus 80 ~~~d~vi~~ag~ 91 (251)
T PRK07231 80 GSVDILVNNAGT 91 (251)
T ss_pred CCCCEEEECCCC
Confidence 357888876543
No 481
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=55.37 E-value=86 Score=25.68 Aligned_cols=58 Identities=22% Similarity=0.186 Sum_probs=38.2
Q ss_pred CCCeEEEEcCCCChHHHHHHh---hcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCC
Q 042544 100 SGQKVLDVGCGIGGPLREIAQ---FSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMK 161 (305)
Q Consensus 100 ~~~~vLDiGcG~G~~~~~l~~---~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~ 161 (305)
++.+||=.|++ |..+..+++ ..+.+|++++.++..++...+..... .++.++.+|+.+
T Consensus 4 ~~~~vlItGa~-g~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~Dl~~ 64 (238)
T PRK05786 4 KGKKVAIIGVS-EGLGYAVAYFALKEGAQVCINSRNENKLKRMKKTLSKY---GNIHYVVGDVSS 64 (238)
T ss_pred CCcEEEEECCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc---CCeEEEECCCCC
Confidence 45789988875 444444442 24789999999887665554433322 257888888875
No 482
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=55.05 E-value=28 Score=33.37 Aligned_cols=63 Identities=10% Similarity=0.036 Sum_probs=42.0
Q ss_pred CeEEEEcCCCChHHHHHHhh---cCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCC----CCCCCeeEEEe
Q 042544 102 QKVLDVGCGIGGPLREIAQF---SSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMP----FPDNSFDAVYA 174 (305)
Q Consensus 102 ~~vLDiGcG~G~~~~~l~~~---~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~fD~v~~ 174 (305)
.+|+=+||| .++..+++. .+.+++.+|.+++.++.+++ .....+.+|..+.. ..-+..|.+++
T Consensus 418 ~hiiI~G~G--~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~--------~g~~~i~GD~~~~~~L~~a~i~~a~~viv 487 (558)
T PRK10669 418 NHALLVGYG--RVGSLLGEKLLAAGIPLVVIETSRTRVDELRE--------RGIRAVLGNAANEEIMQLAHLDCARWLLL 487 (558)
T ss_pred CCEEEECCC--hHHHHHHHHHHHCCCCEEEEECCHHHHHHHHH--------CCCeEEEcCCCCHHHHHhcCccccCEEEE
Confidence 456655555 566666642 36799999999998887764 14678999998731 12245776553
No 483
>PRK06194 hypothetical protein; Provisional
Probab=54.81 E-value=79 Score=26.92 Aligned_cols=75 Identities=12% Similarity=0.055 Sum_probs=46.2
Q ss_pred CCeEEEEcCCCChHHHHHHh---hcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCC-----CC-----CC
Q 042544 101 GQKVLDVGCGIGGPLREIAQ---FSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMP-----FP-----DN 167 (305)
Q Consensus 101 ~~~vLDiGcG~G~~~~~l~~---~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~-----~~-----~~ 167 (305)
+.+||=.|+ +|..+..+++ ..+.+|+.+|.++..++...+.+...+ .++.++.+|+.+.. +. .+
T Consensus 6 ~k~vlVtGa-sggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~d~~~~~~~~~~~~~~~g 82 (287)
T PRK06194 6 GKVAVITGA-ASGFGLAFARIGAALGMKLVLADVQQDALDRAVAELRAQG--AEVLGVRTDVSDAAQVEALADAALERFG 82 (287)
T ss_pred CCEEEEeCC-ccHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhcC--CeEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 567885664 4555555542 137899999998877665554443322 35778899987521 00 13
Q ss_pred CeeEEEecccc
Q 042544 168 SFDAVYAIEAT 178 (305)
Q Consensus 168 ~fD~v~~~~~l 178 (305)
..|+|+.+...
T Consensus 83 ~id~vi~~Ag~ 93 (287)
T PRK06194 83 AVHLLFNNAGV 93 (287)
T ss_pred CCCEEEECCCC
Confidence 57988876544
No 484
>PRK07814 short chain dehydrogenase; Provisional
Probab=54.60 E-value=94 Score=26.12 Aligned_cols=74 Identities=23% Similarity=0.121 Sum_probs=47.2
Q ss_pred CCCeEEEEcCCCChHHHHHHhh---cCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCC-----C-----C
Q 042544 100 SGQKVLDVGCGIGGPLREIAQF---SSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPF-----P-----D 166 (305)
Q Consensus 100 ~~~~vLDiGcG~G~~~~~l~~~---~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~-----~-----~ 166 (305)
+++++|=.|+ +|..+..+++. .+.+|++++.++..++...+.+...+ .++.++..|+.+... . -
T Consensus 9 ~~~~vlItGa-sggIG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~ 85 (263)
T PRK07814 9 DDQVAVVTGA-GRGLGAAIALAFAEAGADVLIAARTESQLDEVAEQIRAAG--RRAHVVAADLAHPEATAGLAGQAVEAF 85 (263)
T ss_pred CCCEEEEECC-CChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 4678887875 55555555531 37899999999877665555444322 357888888876320 0 1
Q ss_pred CCeeEEEecc
Q 042544 167 NSFDAVYAIE 176 (305)
Q Consensus 167 ~~fD~v~~~~ 176 (305)
+.+|+|+..-
T Consensus 86 ~~id~vi~~A 95 (263)
T PRK07814 86 GRLDIVVNNV 95 (263)
T ss_pred CCCCEEEECC
Confidence 3578887654
No 485
>cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina
Probab=54.46 E-value=1.3e+02 Score=25.86 Aligned_cols=96 Identities=17% Similarity=0.209 Sum_probs=57.8
Q ss_pred cCCCCCCeEEEEcCC--CChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCC------CCCC
Q 042544 96 LGLKSGQKVLDVGCG--IGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMP------FPDN 167 (305)
Q Consensus 96 ~~~~~~~~vLDiGcG--~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~------~~~~ 167 (305)
..+.++.+||=.|+. .|..+..+++..+++++.+.-+....+.+++ .+.. .++..+-..+. .+..
T Consensus 135 ~~~~~g~~vlI~g~~g~ig~~~~~~a~~~G~~v~~~~~~~~~~~~~~~----~g~~---~~~~~~~~~~~~~i~~~~~~~ 207 (324)
T cd08292 135 LGVKPGQWLIQNAAGGAVGKLVAMLAAARGINVINLVRRDAGVAELRA----LGIG---PVVSTEQPGWQDKVREAAGGA 207 (324)
T ss_pred hCCCCCCEEEEcccccHHHHHHHHHHHHCCCeEEEEecCHHHHHHHHh----cCCC---EEEcCCCchHHHHHHHHhCCC
Confidence 567788899987752 5667777776668888888777766655543 2321 12211111100 1223
Q ss_pred CeeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 168 SFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 168 ~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
.+|+|+... ... .+.++.+.|+++|.++...
T Consensus 208 ~~d~v~d~~-----g~~-------------~~~~~~~~l~~~g~~v~~g 238 (324)
T cd08292 208 PISVALDSV-----GGK-------------LAGELLSLLGEGGTLVSFG 238 (324)
T ss_pred CCcEEEECC-----CCh-------------hHHHHHHhhcCCcEEEEEe
Confidence 588887431 111 3677889999999987653
No 486
>cd08250 Mgc45594_like Mgc45594 gene product and other MDR family members. Includes Human Mgc45594 gene product of undetermined function. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.
Probab=54.29 E-value=48 Score=28.88 Aligned_cols=95 Identities=21% Similarity=0.251 Sum_probs=57.6
Q ss_pred cCCCCCCeEEEEcC--CCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCC-----CCCCCC
Q 042544 96 LGLKSGQKVLDVGC--GIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKM-----PFPDNS 168 (305)
Q Consensus 96 ~~~~~~~~vLDiGc--G~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~-----~~~~~~ 168 (305)
..+.++.+||=.|+ +.|..+..++...+.+|++++.++...+.+++ .+.. .++..+-... ...++.
T Consensus 135 ~~~~~~~~vlI~ga~g~ig~~~~~~a~~~g~~v~~~~~~~~~~~~~~~----~g~~---~v~~~~~~~~~~~~~~~~~~~ 207 (329)
T cd08250 135 GEMKSGETVLVTAAAGGTGQFAVQLAKLAGCHVIGTCSSDEKAEFLKS----LGCD---RPINYKTEDLGEVLKKEYPKG 207 (329)
T ss_pred cCCCCCCEEEEEeCccHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHH----cCCc---eEEeCCCccHHHHHHHhcCCC
Confidence 45678889998874 46667777776568899999988877766543 2321 1111111110 011245
Q ss_pred eeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEE
Q 042544 169 FDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIW 215 (305)
Q Consensus 169 fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~ 215 (305)
+|+|+... .. . .+..+.+.|+++|.++..
T Consensus 208 vd~v~~~~-----g~--~-----------~~~~~~~~l~~~g~~v~~ 236 (329)
T cd08250 208 VDVVYESV-----GG--E-----------MFDTCVDNLALKGRLIVI 236 (329)
T ss_pred CeEEEECC-----cH--H-----------HHHHHHHHhccCCeEEEE
Confidence 78887431 11 1 377788999999987754
No 487
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=53.88 E-value=73 Score=26.70 Aligned_cols=71 Identities=18% Similarity=0.051 Sum_probs=44.9
Q ss_pred eEEEEcCCCChHHHHHHh---hcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCC-----C-----CCCCe
Q 042544 103 KVLDVGCGIGGPLREIAQ---FSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMP-----F-----PDNSF 169 (305)
Q Consensus 103 ~vLDiGcG~G~~~~~l~~---~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~-----~-----~~~~f 169 (305)
++|=.|++.| .+..+++ ..+.+|+.++.++..++.+.+.+... .++.++..|+.+.. + .-+..
T Consensus 2 ~vlItGas~g-IG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~---~~~~~~~~Dv~d~~~~~~~~~~~~~~~g~i 77 (259)
T PRK08340 2 NVLVTASSRG-IGFNVARELLKKGARVVISSRNEENLEKALKELKEY---GEVYAVKADLSDKDDLKNLVKEAWELLGGI 77 (259)
T ss_pred eEEEEcCCcH-HHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhc---CCceEEEcCCCCHHHHHHHHHHHHHhcCCC
Confidence 5777776644 4444442 13789999999988777666555432 24778888886521 0 11468
Q ss_pred eEEEeccc
Q 042544 170 DAVYAIEA 177 (305)
Q Consensus 170 D~v~~~~~ 177 (305)
|+++.+..
T Consensus 78 d~li~naG 85 (259)
T PRK08340 78 DALVWNAG 85 (259)
T ss_pred CEEEECCC
Confidence 98886543
No 488
>PRK07109 short chain dehydrogenase; Provisional
Probab=53.83 E-value=86 Score=27.75 Aligned_cols=75 Identities=21% Similarity=0.087 Sum_probs=47.7
Q ss_pred CCCeEEEEcCCCChHHHHHHh---hcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCC-C---------CC
Q 042544 100 SGQKVLDVGCGIGGPLREIAQ---FSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMP-F---------PD 166 (305)
Q Consensus 100 ~~~~vLDiGcG~G~~~~~l~~---~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~-~---------~~ 166 (305)
++.+||=.|++ |.....+++ ..+.+|+.++.++..++...+.+...+ .++.++.+|+.+.. . .-
T Consensus 7 ~~k~vlITGas-~gIG~~la~~la~~G~~Vvl~~R~~~~l~~~~~~l~~~g--~~~~~v~~Dv~d~~~v~~~~~~~~~~~ 83 (334)
T PRK07109 7 GRQVVVITGAS-AGVGRATARAFARRGAKVVLLARGEEGLEALAAEIRAAG--GEALAVVADVADAEAVQAAADRAEEEL 83 (334)
T ss_pred CCCEEEEECCC-CHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcC--CcEEEEEecCCCHHHHHHHHHHHHHHC
Confidence 35678877764 444444442 137899999999887776666555443 35778889987621 0 01
Q ss_pred CCeeEEEeccc
Q 042544 167 NSFDAVYAIEA 177 (305)
Q Consensus 167 ~~fD~v~~~~~ 177 (305)
+.+|+++.+-.
T Consensus 84 g~iD~lInnAg 94 (334)
T PRK07109 84 GPIDTWVNNAM 94 (334)
T ss_pred CCCCEEEECCC
Confidence 46888876543
No 489
>PRK07024 short chain dehydrogenase; Provisional
Probab=53.83 E-value=63 Score=27.05 Aligned_cols=73 Identities=15% Similarity=0.053 Sum_probs=44.9
Q ss_pred CeEEEEcCCCChHHHHHHh---hcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCC-C---------CCCC
Q 042544 102 QKVLDVGCGIGGPLREIAQ---FSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMP-F---------PDNS 168 (305)
Q Consensus 102 ~~vLDiGcG~G~~~~~l~~---~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~-~---------~~~~ 168 (305)
++||=.|+. |..+..+++ ..+.+|+.++.++..++...+.+... .++.++.+|+.+.. . ..+.
T Consensus 3 ~~vlItGas-~gIG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~---~~~~~~~~Dl~~~~~i~~~~~~~~~~~g~ 78 (257)
T PRK07024 3 LKVFITGAS-SGIGQALAREYARQGATLGLVARRTDALQAFAARLPKA---ARVSVYAADVRDADALAAAAADFIAAHGL 78 (257)
T ss_pred CEEEEEcCC-cHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcccC---CeeEEEEcCCCCHHHHHHHHHHHHHhCCC
Confidence 467767764 455555542 13789999999887766544433221 15788999987621 0 1134
Q ss_pred eeEEEecccc
Q 042544 169 FDAVYAIEAT 178 (305)
Q Consensus 169 fD~v~~~~~l 178 (305)
.|+++.+...
T Consensus 79 id~lv~~ag~ 88 (257)
T PRK07024 79 PDVVIANAGI 88 (257)
T ss_pred CCEEEECCCc
Confidence 7988876543
No 490
>PF07101 DUF1363: Protein of unknown function (DUF1363); InterPro: IPR009795 This family consists of several Trypanosoma brucei putative variant specific antigen proteins of around 80 residues in length.
Probab=53.80 E-value=5.1 Score=28.07 Aligned_cols=14 Identities=36% Similarity=0.997 Sum_probs=10.4
Q ss_pred EEEEcCCCChHHHH
Q 042544 104 VLDVGCGIGGPLRE 117 (305)
Q Consensus 104 vLDiGcG~G~~~~~ 117 (305)
-+|||||.|...-.
T Consensus 6 NIDIGcG~GNTmda 19 (124)
T PF07101_consen 6 NIDIGCGAGNTMDA 19 (124)
T ss_pred ccccccCCCcchhh
Confidence 47999999975433
No 491
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=53.69 E-value=95 Score=25.89 Aligned_cols=75 Identities=17% Similarity=0.115 Sum_probs=46.6
Q ss_pred CCCeEEEEcCCCChHHHHHHh---hcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCC-C---------CC
Q 042544 100 SGQKVLDVGCGIGGPLREIAQ---FSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMP-F---------PD 166 (305)
Q Consensus 100 ~~~~vLDiGcG~G~~~~~l~~---~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~-~---------~~ 166 (305)
.+.+||=.|++.| .+..+++ ..+.+++.++.+...++.....+...+ .++.++..|+.+.. . .-
T Consensus 10 ~~k~vlVtG~s~g-IG~~la~~l~~~G~~vv~~~r~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~i~~~~~~~~~~~ 86 (255)
T PRK06113 10 DGKCAIITGAGAG-IGKEIAITFATAGASVVVSDINADAANHVVDEIQQLG--GQAFACRCDITSEQELSALADFALSKL 86 (255)
T ss_pred CCCEEEEECCCch-HHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 3678998886654 4444332 237899999988877766554444332 35778888887632 0 01
Q ss_pred CCeeEEEeccc
Q 042544 167 NSFDAVYAIEA 177 (305)
Q Consensus 167 ~~fD~v~~~~~ 177 (305)
+.+|.++.+..
T Consensus 87 ~~~d~li~~ag 97 (255)
T PRK06113 87 GKVDILVNNAG 97 (255)
T ss_pred CCCCEEEECCC
Confidence 45788876543
No 492
>cd08268 MDR2 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=53.68 E-value=1.4e+02 Score=25.49 Aligned_cols=97 Identities=19% Similarity=0.217 Sum_probs=56.9
Q ss_pred HcCCCCCCeEEEEcC--CCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCC------CCC
Q 042544 95 QLGLKSGQKVLDVGC--GIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMP------FPD 166 (305)
Q Consensus 95 ~~~~~~~~~vLDiGc--G~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~------~~~ 166 (305)
...+.++.+||=.|+ +.|..+..++...+.+++.++.++...+.+++ .+.. .+...+....+ ...
T Consensus 139 ~~~~~~~~~vli~g~~~~~g~~~~~~~~~~g~~v~~~~~~~~~~~~~~~----~g~~---~~~~~~~~~~~~~~~~~~~~ 211 (328)
T cd08268 139 LAGLRPGDSVLITAASSSVGLAAIQIANAAGATVIATTRTSEKRDALLA----LGAA---HVIVTDEEDLVAEVLRITGG 211 (328)
T ss_pred hcCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHH----cCCC---EEEecCCccHHHHHHHHhCC
Confidence 345667888998886 34445555555558899999998877665533 2321 12222111110 112
Q ss_pred CCeeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 167 NSFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 167 ~~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
..+|+++.... .. ....+.+.++++|.++...
T Consensus 212 ~~~d~vi~~~~-----~~-------------~~~~~~~~l~~~g~~v~~g 243 (328)
T cd08268 212 KGVDVVFDPVG-----GP-------------QFAKLADALAPGGTLVVYG 243 (328)
T ss_pred CCceEEEECCc-----hH-------------hHHHHHHhhccCCEEEEEE
Confidence 35788875322 11 3667788999999887653
No 493
>cd05282 ETR_like 2-enoyl thioester reductase-like. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossman
Probab=53.54 E-value=47 Score=28.72 Aligned_cols=95 Identities=16% Similarity=0.206 Sum_probs=56.5
Q ss_pred cCCCCCCeEEEEcCC--CChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCC------CCCCC
Q 042544 96 LGLKSGQKVLDVGCG--IGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKM------PFPDN 167 (305)
Q Consensus 96 ~~~~~~~~vLDiGcG--~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~------~~~~~ 167 (305)
..+.++.+||=.|++ .|..+..+++..+.+++++..++...+.+++ .+.. .++...-... .....
T Consensus 134 ~~~~~~~~vlI~g~~~~vg~~~~~~a~~~g~~v~~~~~~~~~~~~~~~----~g~~---~~~~~~~~~~~~~~~~~~~~~ 206 (323)
T cd05282 134 LKLPPGDWVIQNAANSAVGRMLIQLAKLLGFKTINVVRRDEQVEELKA----LGAD---EVIDSSPEDLAQRVKEATGGA 206 (323)
T ss_pred ccCCCCCEEEEcccccHHHHHHHHHHHHCCCeEEEEecChHHHHHHHh----cCCC---EEecccchhHHHHHHHHhcCC
Confidence 345678899988773 5666777776668999999888877666543 2321 1111110000 01224
Q ss_pred CeeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEE
Q 042544 168 SFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIW 215 (305)
Q Consensus 168 ~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~ 215 (305)
.+|+|+.+.. .. ......+.|+++|.++..
T Consensus 207 ~~d~vl~~~g-----~~-------------~~~~~~~~l~~~g~~v~~ 236 (323)
T cd05282 207 GARLALDAVG-----GE-------------SATRLARSLRPGGTLVNY 236 (323)
T ss_pred CceEEEECCC-----CH-------------HHHHHHHhhCCCCEEEEE
Confidence 5888875321 11 245667899999987754
No 494
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=53.17 E-value=82 Score=26.33 Aligned_cols=74 Identities=15% Similarity=0.158 Sum_probs=43.7
Q ss_pred CCCeEEEEcCCCChHHHHHHh---hcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCC-----CC-----C
Q 042544 100 SGQKVLDVGCGIGGPLREIAQ---FSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMP-----FP-----D 166 (305)
Q Consensus 100 ~~~~vLDiGcG~G~~~~~l~~---~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~-----~~-----~ 166 (305)
.+.+||=.|++.| .+..+++ ..+.+|+.++.+ ...+.+.+.....+ .++.++.+|+.+.. +. -
T Consensus 14 ~~k~vlItGas~g-IG~~ia~~l~~~G~~v~~~~~~-~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~i~~~~~~~~~~~ 89 (258)
T PRK06935 14 DGKVAIVTGGNTG-LGQGYAVALAKAGADIIITTHG-TNWDETRRLIEKEG--RKVTFVQVDLTKPESAEKVVKEALEEF 89 (258)
T ss_pred CCCEEEEeCCCch-HHHHHHHHHHHCCCEEEEEeCC-cHHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 4678998887655 4444432 137899998877 33334444443332 35788889987632 00 1
Q ss_pred CCeeEEEeccc
Q 042544 167 NSFDAVYAIEA 177 (305)
Q Consensus 167 ~~fD~v~~~~~ 177 (305)
+..|.++.+..
T Consensus 90 g~id~li~~ag 100 (258)
T PRK06935 90 GKIDILVNNAG 100 (258)
T ss_pred CCCCEEEECCC
Confidence 35788876543
No 495
>PRK06139 short chain dehydrogenase; Provisional
Probab=53.05 E-value=80 Score=27.96 Aligned_cols=75 Identities=16% Similarity=0.061 Sum_probs=47.8
Q ss_pred CCCeEEEEcCCCChHHHHHHh---hcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCC-----C-----CC
Q 042544 100 SGQKVLDVGCGIGGPLREIAQ---FSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMP-----F-----PD 166 (305)
Q Consensus 100 ~~~~vLDiGcG~G~~~~~l~~---~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~-----~-----~~ 166 (305)
++++||=.|++.| ....+++ ..+.+|+.++.++..++...+.+...+ ..+.++..|+.+.. + ..
T Consensus 6 ~~k~vlITGAs~G-IG~aia~~la~~G~~Vvl~~R~~~~l~~~~~~~~~~g--~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 82 (330)
T PRK06139 6 HGAVVVITGASSG-IGQATAEAFARRGARLVLAARDEEALQAVAEECRALG--AEVLVVPTDVTDADQVKALATQAASFG 82 (330)
T ss_pred CCCEEEEcCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEEeeCCCHHHHHHHHHHHHHhc
Confidence 4568887776543 4444432 237899999999988877666655443 34677788887521 0 01
Q ss_pred CCeeEEEeccc
Q 042544 167 NSFDAVYAIEA 177 (305)
Q Consensus 167 ~~fD~v~~~~~ 177 (305)
+.+|+++.+-.
T Consensus 83 g~iD~lVnnAG 93 (330)
T PRK06139 83 GRIDVWVNNVG 93 (330)
T ss_pred CCCCEEEECCC
Confidence 56898887653
No 496
>PRK08267 short chain dehydrogenase; Provisional
Probab=52.70 E-value=71 Score=26.74 Aligned_cols=72 Identities=13% Similarity=0.062 Sum_probs=45.0
Q ss_pred CeEEEEcCCCChHHHHHHh---hcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCC-----CC------CC
Q 042544 102 QKVLDVGCGIGGPLREIAQ---FSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMP-----FP------DN 167 (305)
Q Consensus 102 ~~vLDiGcG~G~~~~~l~~---~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~-----~~------~~ 167 (305)
+++|=.|++ |..+..+++ ..+.+|+.++.++..++...+... ..++.++++|+.+.. +. .+
T Consensus 2 k~vlItGas-g~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~----~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~ 76 (260)
T PRK08267 2 KSIFITGAA-SGIGRATALLFAAEGWRVGAYDINEAGLAALAAELG----AGNAWTGALDVTDRAAWDAALADFAAATGG 76 (260)
T ss_pred cEEEEeCCC-chHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhc----CCceEEEEecCCCHHHHHHHHHHHHHHcCC
Confidence 357777765 444444442 137899999998877665544322 235888999997622 10 34
Q ss_pred CeeEEEecccc
Q 042544 168 SFDAVYAIEAT 178 (305)
Q Consensus 168 ~fD~v~~~~~l 178 (305)
.+|.|+.+...
T Consensus 77 ~id~vi~~ag~ 87 (260)
T PRK08267 77 RLDVLFNNAGI 87 (260)
T ss_pred CCCEEEECCCC
Confidence 67988865543
No 497
>COG2130 Putative NADP-dependent oxidoreductases [General function prediction only]
Probab=52.48 E-value=1.1e+02 Score=26.94 Aligned_cols=99 Identities=17% Similarity=0.227 Sum_probs=66.9
Q ss_pred HcCCCCCCeEEEEcC--CCChHHHHHHhhcCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCC-CC--CCCCCe
Q 042544 95 QLGLKSGQKVLDVGC--GIGGPLREIAQFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMK-MP--FPDNSF 169 (305)
Q Consensus 95 ~~~~~~~~~vLDiGc--G~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~-~~--~~~~~f 169 (305)
...+++|.+|+=-|+ +.|.....+|+..+++|+|+=-+++-.+.+.+. .|.+..+++...|+.+ +. .| ...
T Consensus 145 igqpk~GetvvVSaAaGaVGsvvgQiAKlkG~rVVGiaGg~eK~~~l~~~---lGfD~~idyk~~d~~~~L~~a~P-~GI 220 (340)
T COG2130 145 IGQPKAGETVVVSAAAGAVGSVVGQIAKLKGCRVVGIAGGAEKCDFLTEE---LGFDAGIDYKAEDFAQALKEACP-KGI 220 (340)
T ss_pred hcCCCCCCEEEEEecccccchHHHHHHHhhCCeEEEecCCHHHHHHHHHh---cCCceeeecCcccHHHHHHHHCC-CCe
Confidence 456677877775443 477888889987799999999999998887663 3444455565555543 21 23 447
Q ss_pred eEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEE
Q 042544 170 DAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIW 215 (305)
Q Consensus 170 D~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~ 215 (305)
|+.+-+ +-.+ .++.+...|+..|++.+-
T Consensus 221 DvyfeN-----VGg~-------------v~DAv~~~ln~~aRi~~C 248 (340)
T COG2130 221 DVYFEN-----VGGE-------------VLDAVLPLLNLFARIPVC 248 (340)
T ss_pred EEEEEc-----CCch-------------HHHHHHHhhccccceeee
Confidence 776532 2221 588888999999987764
No 498
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=52.17 E-value=1.2e+02 Score=24.99 Aligned_cols=74 Identities=19% Similarity=0.095 Sum_probs=46.7
Q ss_pred CCeEEEEcCCCChHHHHHHhh---cCCeEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCC-----CC-----CC
Q 042544 101 GQKVLDVGCGIGGPLREIAQF---SSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMP-----FP-----DN 167 (305)
Q Consensus 101 ~~~vLDiGcG~G~~~~~l~~~---~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~-----~~-----~~ 167 (305)
+.++|=.|+ +|..+..+++. .+.+|+.++.++...+.....+... ..++.++..|+.+.. +. .+
T Consensus 7 ~~~vlVtG~-sg~iG~~l~~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 83 (239)
T PRK07666 7 GKNALITGA-GRGIGRAVAIALAKEGVNVGLLARTEENLKAVAEEVEAY--GVKVVIATADVSDYEEVTAAIEQLKNELG 83 (239)
T ss_pred CCEEEEEcC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHh--CCeEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 467887875 56666665532 3789999999887665544444332 236788888886531 00 13
Q ss_pred CeeEEEeccc
Q 042544 168 SFDAVYAIEA 177 (305)
Q Consensus 168 ~fD~v~~~~~ 177 (305)
..|+|+....
T Consensus 84 ~id~vi~~ag 93 (239)
T PRK07666 84 SIDILINNAG 93 (239)
T ss_pred CccEEEEcCc
Confidence 5788887653
No 499
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=52.16 E-value=19 Score=32.69 Aligned_cols=38 Identities=16% Similarity=0.154 Sum_probs=25.3
Q ss_pred CeEEEEcCCCChHHHHHH---hhcCCeEEEEcCCHHHHHHHHH
Q 042544 102 QKVLDVGCGIGGPLREIA---QFSSTSVTGLNNNEYQITRGKE 141 (305)
Q Consensus 102 ~~vLDiGcG~G~~~~~l~---~~~~~~v~gvD~s~~~l~~a~~ 141 (305)
.+|-=+|-| +.++.+| ...+.+|+|+||++..++...+
T Consensus 10 ~~I~ViGLG--YVGLPlA~~fA~~G~~ViG~DIn~~~Vd~ln~ 50 (436)
T COG0677 10 ATIGVIGLG--YVGLPLAAAFASAGFKVIGVDINQKKVDKLNR 50 (436)
T ss_pred eEEEEEccc--cccHHHHHHHHHcCCceEeEeCCHHHHHHHhC
Confidence 566666655 4444444 2247899999999998876543
No 500
>cd08287 FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-like. This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=52.09 E-value=33 Score=30.23 Aligned_cols=97 Identities=18% Similarity=0.170 Sum_probs=55.4
Q ss_pred HcCCCCCCeEEEEcCC-CChHHHHHHhhcCC-eEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEEcCC-------CCCCCC
Q 042544 95 QLGLKSGQKVLDVGCG-IGGPLREIAQFSST-SVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADF-------MKMPFP 165 (305)
Q Consensus 95 ~~~~~~~~~vLDiGcG-~G~~~~~l~~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~d~-------~~~~~~ 165 (305)
...+.++.+||=.||| .|..+..+++..+. .+++++.++...+.+++ .|.. .++...- ... .+
T Consensus 163 ~~~~~~g~~vlI~g~g~vg~~~~~lak~~G~~~v~~~~~~~~~~~~~~~----~ga~---~v~~~~~~~~~~~i~~~-~~ 234 (345)
T cd08287 163 SAGVRPGSTVVVVGDGAVGLCAVLAAKRLGAERIIAMSRHEDRQALARE----FGAT---DIVAERGEEAVARVREL-TG 234 (345)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH----cCCc---eEecCCcccHHHHHHHh-cC
Confidence 3466677788777765 34455555655566 48999988766555543 2321 1111110 011 12
Q ss_pred CCCeeEEEecccccccCChhhhhhcCCCCCcccHHHHHHHHHhCCceEEEe
Q 042544 166 DNSFDAVYAIEATCHAPDAAEIEIGDGLPDIRSTRKCLEALKQAGFEVIWE 216 (305)
Q Consensus 166 ~~~fD~v~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~~~i~~ 216 (305)
...+|+++..- .... .+..+.+.|+++|.++...
T Consensus 235 ~~~~d~il~~~-----g~~~------------~~~~~~~~l~~~g~~v~~g 268 (345)
T cd08287 235 GVGADAVLECV-----GTQE------------SMEQAIAIARPGGRVGYVG 268 (345)
T ss_pred CCCCCEEEECC-----CCHH------------HHHHHHHhhccCCEEEEec
Confidence 33578876431 1111 4788899999999988754
Done!