BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042545
(183 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1XG2|B Chain B, Crystal Structure Of The Complex Between Pectin
Methylesterase And Its Inhibitor Protein
Length = 153
Score = 86.3 bits (212), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 54/150 (36%), Positives = 77/150 (51%), Gaps = 1/150 (0%)
Query: 33 ENDLIEATCRKTSYPDLCIKTLRSSPGSSGADVKALAHIILESASAYCNDTYEQVKKLLN 92
EN LI C KT P LC++ L S P S+ D+K L ++ A A T + + L N
Sbjct: 2 ENHLISEICPKTRNPSLCLQALESDPRSASKDLKGLGQFSIDIAQASAKQTSKIIASLTN 61
Query: 93 ETKDKAMRNCLDVCFQVYDLAIYEIPTAIKYLESGDYDSAVQYANDGIIESDTCESSFSE 152
+ D ++ + C + Y AI + A ++L SGDY+S YA+ + TCE SF
Sbjct: 62 QATDPKLKGRYETCSENYADAIDSLGQAKQFLTSGDYNSLNIYASAAFDGAGTCEDSFEG 121
Query: 153 FPEIPKSPLTDRNNGLTNLCTIVLDMINLL 182
P IP + L + L +LC IVL + NLL
Sbjct: 122 PPNIP-TQLHQADLKLEDLCDIVLVISNLL 150
>pdb|2CJ4|A Chain A, Crystal Structure Of A Cell Wall Invertase Inhibitor From
Tobacco At Ph 4.6
pdb|2CJ4|B Chain B, Crystal Structure Of A Cell Wall Invertase Inhibitor From
Tobacco At Ph 4.6
pdb|2CJ5|A Chain A, Crystal Structure Of A Cell Wall Invertase Inhibitor From
Tobacco (Ph 5.0)
pdb|2CJ6|A Chain A, Crystal Structure Of A Cell Wall Invertase Inhibitor From
Tobacco (Ph 7.5)
pdb|2CJ7|A Chain A, Crystal Structure Of A Cell Wall Invertase Inhibitor From
Tobacco (ph 9.0)
pdb|2CJ8|A Chain A, Crystal Structure Of A Cell Wall Invertase Inhibitor From
Tobacco (Ph 9.5)
pdb|2CJ8|B Chain B, Crystal Structure Of A Cell Wall Invertase Inhibitor From
Tobacco (Ph 9.5)
Length = 150
Score = 59.3 bits (142), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 65/136 (47%), Gaps = 5/136 (3%)
Query: 31 GEENDLIEATCRKTSYPDLCIKTLRSSPGSSGADVKALAHIILESASAYCNDTYEQVKKL 90
G N+L+E TC+ T LC+KTL S S+ D+ LA I++++ A N + KL
Sbjct: 1 GAMNNLVETTCKNTPNYQLCLKTLLSDKRSATGDITTLALIMVDAIKAKANQAAVTISKL 60
Query: 91 LNETKDKAMRNCLDVCFQVYDLAI-YEIPTAIKYLESGDYDSAVQYANDGIIESDTCESS 149
+ A + L C Y + + +P AI+ L GD ++A DG++ S
Sbjct: 61 RHSNPPAAWKGPLKNCAFSYKVILTASLPEAIEALTKGD----PKFAEDGMVGSSGDAQE 116
Query: 150 FSEFPEIPKSPLTDRN 165
E+ + KSP + N
Sbjct: 117 CEEYFKGSKSPFSALN 132
>pdb|1RJ1|A Chain A, Crystal Structure Of A Cell Wall Invertase Inhibitor From
Tobacco
pdb|1RJ4|A Chain A, Structure Of A Cell Wall Invertase Inhibitor From Tobacco
In Complex With Cd2+
pdb|1RJ4|B Chain B, Structure Of A Cell Wall Invertase Inhibitor From Tobacco
In Complex With Cd2+
pdb|1RJ4|C Chain C, Structure Of A Cell Wall Invertase Inhibitor From Tobacco
In Complex With Cd2+
pdb|1RJ4|D Chain D, Structure Of A Cell Wall Invertase Inhibitor From Tobacco
In Complex With Cd2+
Length = 151
Score = 58.2 bits (139), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 72/151 (47%), Gaps = 6/151 (3%)
Query: 34 NDLIEATCRKTSYPDLCIKTLRSSPGSSGADVKALAHIILESASAYCNDTYEQVKKLLNE 93
N+L+E TC+ T LC+KTL S S+ D+ LA I++++ A N + KL +
Sbjct: 5 NNLVETTCKNTPNYQLCLKTLLSDKRSATGDITTLALIMVDAIKAKANQAAVTISKLRHS 64
Query: 94 TKDKAMRNCLDVCFQVYDLAI-YEIPTAIKYLESGDYDSAVQYANDGIIESDTCESSFSE 152
A + L C Y + + +P AI+ L GD ++A DG++ S E
Sbjct: 65 NPPAAWKGPLKNCAFSYKVILTASLPEAIEALTKGD----PKFAEDGMVGSSGDAQECEE 120
Query: 153 FPEIPKSPLTDRNNGLTNLCTIVLDMI-NLL 182
+ + KSP + N + L + ++ NLL
Sbjct: 121 YFKGSKSPFSALNIAVHELSDVGRAIVRNLL 151
>pdb|2XQR|B Chain B, Crystal Structure Of Plant Cell Wall Invertase In Complex
With A Specific Protein Inhibitor
pdb|2XQR|D Chain D, Crystal Structure Of Plant Cell Wall Invertase In Complex
With A Specific Protein Inhibitor
pdb|2XQR|F Chain F, Crystal Structure Of Plant Cell Wall Invertase In Complex
With A Specific Protein Inhibitor
pdb|2XQR|H Chain H, Crystal Structure Of Plant Cell Wall Invertase In Complex
With A Specific Protein Inhibitor
pdb|2XQR|J Chain J, Crystal Structure Of Plant Cell Wall Invertase In Complex
With A Specific Protein Inhibitor
pdb|2XQR|L Chain L, Crystal Structure Of Plant Cell Wall Invertase In Complex
With A Specific Protein Inhibitor
Length = 149
Score = 58.2 bits (139), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 72/151 (47%), Gaps = 6/151 (3%)
Query: 34 NDLIEATCRKTSYPDLCIKTLRSSPGSSGADVKALAHIILESASAYCNDTYEQVKKLLNE 93
N+L+E TC+ T LC+KTL S S+ D+ LA I++++ A N + KL +
Sbjct: 3 NNLVETTCKNTPNYQLCLKTLLSDKRSATGDITTLALIMVDAIKAKANQAAVTISKLRHS 62
Query: 94 TKDKAMRNCLDVCFQVYDLAI-YEIPTAIKYLESGDYDSAVQYANDGIIESDTCESSFSE 152
A + L C Y + + +P AI+ L GD ++A DG++ S E
Sbjct: 63 NPPAAWKGPLKNCAFSYKVILTASLPEAIEALTKGD----PKFAEDGMVGSSGDAQECEE 118
Query: 153 FPEIPKSPLTDRNNGLTNLCTIVLDMI-NLL 182
+ + KSP + N + L + ++ NLL
Sbjct: 119 YFKGSKSPFSALNIAVHELSDVGRAIVRNLL 149
>pdb|1X90|A Chain A, Crystal Structure Of Mutant Form B Of A Pectin
Methylesterase Inhibitor From Arabidopsis
pdb|1X90|B Chain B, Crystal Structure Of Mutant Form B Of A Pectin
Methylesterase Inhibitor From Arabidopsis
Length = 152
Score = 50.8 bits (120), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 68/145 (46%), Gaps = 9/145 (6%)
Query: 41 CRKTSYPDLCIKTLRSSPGSSGADVKALAHIILESASAYCNDTYEQVKKLLNETKDKAMR 100
C KT P C+K L + S A+++ALA L+S A T ++++ +++ D +
Sbjct: 11 CDKTLNPSFCLKFLNTKFAS--ANLQALAKTTLDSTQARATQTLKKLQSIIDGGVDPRSK 68
Query: 101 NCLDVCFQVYDLAIYEIPTAIKYLESGD---YDSAVQYANDGIIESDTCESSFSEFPEIP 157
C Y+ AI + A ++L SGD + V A DG +DTC +
Sbjct: 69 LAYRSCVDEYESAIGNLEEAFEHLASGDGMGMNMKVSAALDG---ADTCLDDVKRLRSVD 125
Query: 158 KSPLTDRNNGLTNLCTIVLDMINLL 182
S + + + + NLC I L + N+L
Sbjct: 126 -SSVVNNSKTIKNLCGIALVISNML 149
>pdb|1X91|A Chain A, Crystal Structure Of Mutant Form A Of A Pectin
Methylesterase Inhibitor From Arabidopsis
Length = 153
Score = 50.4 bits (119), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 68/145 (46%), Gaps = 9/145 (6%)
Query: 41 CRKTSYPDLCIKTLRSSPGSSGADVKALAHIILESASAYCNDTYEQVKKLLNETKDKAMR 100
C KT P C+K L + S A+++ALA L+S A T ++++ +++ D +
Sbjct: 12 CDKTLNPSFCLKFLNTKFAS--ANLQALAKTTLDSTQARATQTLKKLQSIIDGGVDPRSK 69
Query: 101 NCLDVCFQVYDLAIYEIPTAIKYLESGD---YDSAVQYANDGIIESDTCESSFSEFPEIP 157
C Y+ AI + A ++L SGD + V A DG +DTC +
Sbjct: 70 LAYRSCVDEYESAIGNLEEAFEHLASGDGMGMNMKVSAALDG---ADTCLDDVKRLRSVD 126
Query: 158 KSPLTDRNNGLTNLCTIVLDMINLL 182
S + + + + NLC I L + N+L
Sbjct: 127 -SSVVNNSKTIKNLCGIALVISNML 150
>pdb|1AXI|B Chain B, Structural Plasticity At The Hgh:hghbp Interface
Length = 236
Score = 28.5 bits (62), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
Query: 84 YEQVKKLLNETKDKAMRNCLDVCFQVYDLAI---YEIPTAIKYLESGDY 129
YE K +NETK K M L VY L + YE+ K SG+Y
Sbjct: 174 YELQYKEVNETKWKMMDPILTTSVPVYSLKVDKEYEVRVRSKQRNSGNY 222
>pdb|1HWG|B Chain B, 1:2 Complex Of Human Growth Hormone With Its Soluble
Binding Protein
pdb|1HWG|C Chain C, 1:2 Complex Of Human Growth Hormone With Its Soluble
Binding Protein
pdb|1HWH|B Chain B, 1:1 Complex Of Human Growth Hormone Mutant G120r With Its
Soluble Binding Protein
Length = 237
Score = 28.5 bits (62), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
Query: 84 YEQVKKLLNETKDKAMRNCLDVCFQVYDLAI---YEIPTAIKYLESGDY 129
YE K +NETK K M L VY L + YE+ K SG+Y
Sbjct: 174 YELQYKEVNETKWKMMDPILTTSVPVYSLKVDKEYEVRVRSKQRNSGNY 222
>pdb|1A22|B Chain B, Human Growth Hormone Bound To Single Receptor
pdb|1KF9|B Chain B, Phage Display Derived Variant Of Human Growth Hormone
Complexed With Two Copies Of The Extracellular Domain Of
Its Receptor
pdb|1KF9|C Chain C, Phage Display Derived Variant Of Human Growth Hormone
Complexed With Two Copies Of The Extracellular Domain Of
Its Receptor
pdb|1KF9|E Chain E, Phage Display Derived Variant Of Human Growth Hormone
Complexed With Two Copies Of The Extracellular Domain Of
Its Receptor
pdb|1KF9|F Chain F, Phage Display Derived Variant Of Human Growth Hormone
Complexed With Two Copies Of The Extracellular Domain Of
Its Receptor
Length = 238
Score = 28.5 bits (62), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
Query: 84 YEQVKKLLNETKDKAMRNCLDVCFQVYDLAI---YEIPTAIKYLESGDY 129
YE K +NETK K M L VY L + YE+ K SG+Y
Sbjct: 174 YELQYKEVNETKWKMMDPILTTSVPVYSLKVDKEYEVRVRSKQRNSGNY 222
>pdb|3HHR|B Chain B, Human Growth Hormone And Extracellular Domain Of Its
Receptor: Crystal Structure Of The Complex
pdb|3HHR|C Chain C, Human Growth Hormone And Extracellular Domain Of Its
Receptor: Crystal Structure Of The Complex
Length = 205
Score = 27.7 bits (60), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
Query: 84 YEQVKKLLNETKDKAMRNCLDVCFQVYDLAI---YEIPTAIKYLESGDY 129
YE K +NETK K M L VY L + YE+ K SG+Y
Sbjct: 143 YELQYKEVNETKWKMMDPILTTSVPVYSLKVDKEYEVRVRSKQRNSGNY 191
>pdb|2AEW|A Chain A, A Model For Growth Hormone Receptor Activation Based On
Subunit Rotation Within A Receptor Dimer
pdb|2AEW|B Chain B, A Model For Growth Hormone Receptor Activation Based On
Subunit Rotation Within A Receptor Dimer
Length = 205
Score = 27.7 bits (60), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
Query: 84 YEQVKKLLNETKDKAMRNCLDVCFQVYDLAI---YEIPTAIKYLESGDY 129
YE K +NETK K M L VY L + YE+ K SG+Y
Sbjct: 146 YELQYKEVNETKWKMMDPILTTSVPVYSLKVDKEYEVRVRSKQRNSGNY 194
>pdb|1EB4|A Chain A, Histidine Ammonia-Lyase (Hal) Mutant F329a From
Pseudomonas Putida
Length = 507
Score = 27.7 bits (60), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 6/64 (9%)
Query: 10 MMFLLMTLCFLSNKPGIVGVRGEENDLIEATCRKTSYPDLCIKTLRSSPGSSGADVKALA 69
++ L+M L S G G+R + D + A YP + +K GS G D+ LA
Sbjct: 95 LVRLIMVLKINSLSRGFSGIRRKVIDALIALVNAEVYPHIPLK------GSVGXDLAPLA 148
Query: 70 HIIL 73
H+ L
Sbjct: 149 HMSL 152
>pdb|1GKM|A Chain A, Histidine Ammonia-Lyase (Hal) From Pseudomonas Putida
Inhibited With L-Cysteine
pdb|1B8F|A Chain A, Histidine Ammonia-Lyase (Hal) From Pseudomonas Putida
Length = 507
Score = 27.7 bits (60), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 6/64 (9%)
Query: 10 MMFLLMTLCFLSNKPGIVGVRGEENDLIEATCRKTSYPDLCIKTLRSSPGSSGADVKALA 69
++ L+M L S G G+R + D + A YP + +K GS G D+ LA
Sbjct: 95 LVRLIMVLKINSLSRGFSGIRRKVIDALIALVNAEVYPHIPLK------GSVGXDLAPLA 148
Query: 70 HIIL 73
H+ L
Sbjct: 149 HMSL 152
>pdb|1GKJ|A Chain A, Histidine Ammonia-Lyase (Hal) Mutant Y280f From
Pseudomonas Putida
Length = 507
Score = 27.7 bits (60), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 6/64 (9%)
Query: 10 MMFLLMTLCFLSNKPGIVGVRGEENDLIEATCRKTSYPDLCIKTLRSSPGSSGADVKALA 69
++ L+M L S G G+R + D + A YP + +K GS G D+ LA
Sbjct: 95 LVRLIMVLKINSLSRGFSGIRRKVIDALIALVNAEVYPHIPLK------GSVGXDLAPLA 148
Query: 70 HIIL 73
H+ L
Sbjct: 149 HMSL 152
>pdb|1KFX|L Chain L, Crystal Structure Of Human M-Calpain Form I
pdb|1KFU|L Chain L, Crystal Structure Of Human M-Calpain Form Ii
Length = 699
Score = 27.3 bits (59), Expect = 4.3, Method: Composition-based stats.
Identities = 18/85 (21%), Positives = 33/85 (38%), Gaps = 15/85 (17%)
Query: 83 TYEQVKKLLNETKDKAMRNCLDVCFQVYDLAIYEIPTAIKYLESGDYDSAV--------- 133
++E+ K LN+ + CL+ D + IP+A+ + E G Y S
Sbjct: 19 SHERAIKYLNQDYEALRNECLEAGTLFQDPSFPAIPSALGFKELGPYSSKTRGMRWKRPT 78
Query: 134 ------QYANDGIIESDTCESSFSE 152
Q+ G +D C+ + +
Sbjct: 79 EICADPQFIIGGATRTDICQGALGD 103
>pdb|2BPT|A Chain A, Structure Of The Nup1p:kap95p Complex
pdb|2BKU|B Chain B, Kap95p:rangtp Complex
pdb|2BKU|D Chain D, Kap95p:rangtp Complex
pdb|3EA5|B Chain B, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
pdb|3EA5|D Chain D, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
Length = 861
Score = 27.3 bits (59), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 20/31 (64%)
Query: 152 EFPEIPKSPLTDRNNGLTNLCTIVLDMINLL 182
E + P+SPL N L+++ +V +++NLL
Sbjct: 303 ELAQFPQSPLQSYNFALSSIKDVVPNLLNLL 333
>pdb|3ND2|A Chain A, Structure Of Yeast Importin-Beta (Kap95p)
Length = 861
Score = 27.3 bits (59), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 20/31 (64%)
Query: 152 EFPEIPKSPLTDRNNGLTNLCTIVLDMINLL 182
E + P+SPL N L+++ +V +++NLL
Sbjct: 303 ELAQFPQSPLQSYNFALSSIKDVVPNLLNLL 333
>pdb|2NLK|A Chain A, Crystal Structure Of D1 And D2 Catalytic Domains Of Human
Protein Tyrosine Phosphatase Gamma (D1+d2 Ptprg)
Length = 627
Score = 26.9 bits (58), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 22/101 (21%), Positives = 41/101 (40%), Gaps = 6/101 (5%)
Query: 30 RGEENDLIEATCRKTSYPDL-----CIKTLRSSPGSSGADVKALAHIILE-SASAYCNDT 83
+G +N+ + T +PD+ + L SS A + +++ SA T
Sbjct: 185 KGRQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARMPETGPVLVHCSAGVGRTGT 244
Query: 84 YEQVKKLLNETKDKAMRNCLDVCFQVYDLAIYEIPTAIKYL 124
Y + +L + KDK+ N L + Y + T +Y+
Sbjct: 245 YIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYI 285
>pdb|2PBN|A Chain A, Crystal Structure Of The Human Tyrosine Receptor Phosphate
Gamma
Length = 313
Score = 26.6 bits (57), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 22/101 (21%), Positives = 41/101 (40%), Gaps = 6/101 (5%)
Query: 30 RGEENDLIEATCRKTSYPDL-----CIKTLRSSPGSSGADVKALAHIILE-SASAYCNDT 83
+G +N+ + T +PD+ + L SS A + +++ SA T
Sbjct: 193 KGRQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARMPETGPVLVHCSAGVGRTGT 252
Query: 84 YEQVKKLLNETKDKAMRNCLDVCFQVYDLAIYEIPTAIKYL 124
Y + +L + KDK+ N L + Y + T +Y+
Sbjct: 253 YIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYI 293
>pdb|2H4V|A Chain A, Crystal Structure Of The Human Tyrosine Receptor
Phosphatase Gamma
pdb|2H4V|B Chain B, Crystal Structure Of The Human Tyrosine Receptor
Phosphatase Gamma
Length = 320
Score = 26.6 bits (57), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 22/101 (21%), Positives = 41/101 (40%), Gaps = 6/101 (5%)
Query: 30 RGEENDLIEATCRKTSYPDL-----CIKTLRSSPGSSGADVKALAHIILE-SASAYCNDT 83
+G +N+ + T +PD+ + L SS A + +++ SA T
Sbjct: 203 KGRQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARMPETGPVLVHCSAGVGRTGT 262
Query: 84 YEQVKKLLNETKDKAMRNCLDVCFQVYDLAIYEIPTAIKYL 124
Y + +L + KDK+ N L + Y + T +Y+
Sbjct: 263 YIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYI 303
>pdb|3QCM|A Chain A, Human Receptor Protein Tyrosine Phosphatase Gamma, Domain
1, In Complex With
2-[(3,4-Dichlorobenzyl)sulfanyl]-4-{[3-({n-[2-
(Methylamino)ethyl]glycyl}amino)phenyl]ethynyl}benzoic
Acid
pdb|3QCM|B Chain B, Human Receptor Protein Tyrosine Phosphatase Gamma, Domain
1, In Complex With
2-[(3,4-Dichlorobenzyl)sulfanyl]-4-{[3-({n-[2-
(Methylamino)ethyl]glycyl}amino)phenyl]ethynyl}benzoic
Acid
Length = 310
Score = 26.6 bits (57), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 22/101 (21%), Positives = 41/101 (40%), Gaps = 6/101 (5%)
Query: 30 RGEENDLIEATCRKTSYPDL-----CIKTLRSSPGSSGADVKALAHIILE-SASAYCNDT 83
+G +N+ + T +PD+ + L SS A + +++ SA T
Sbjct: 192 KGRQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARMPETGPVLVHCSAGVGRTGT 251
Query: 84 YEQVKKLLNETKDKAMRNCLDVCFQVYDLAIYEIPTAIKYL 124
Y + +L + KDK+ N L + Y + T +Y+
Sbjct: 252 YIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYI 292
>pdb|1GK2|A Chain A, Histidine Ammonia-Lyase (Hal) Mutant F329g From
Pseudomonas Putida
pdb|1GK2|B Chain B, Histidine Ammonia-Lyase (Hal) Mutant F329g From
Pseudomonas Putida
pdb|1GK2|C Chain C, Histidine Ammonia-Lyase (Hal) Mutant F329g From
Pseudomonas Putida
pdb|1GK2|D Chain D, Histidine Ammonia-Lyase (Hal) Mutant F329g From
Pseudomonas Putida
Length = 509
Score = 26.6 bits (57), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 4/64 (6%)
Query: 10 MMFLLMTLCFLSNKPGIVGVRGEENDLIEATCRKTSYPDLCIKTLRSSPGSSGADVKALA 69
++ L+M L S G G+R + D + A YP + L+ S G+SG D+ LA
Sbjct: 95 LVRLIMVLKINSLSRGFSGIRRKVIDALIALVNAEVYPHI---PLKGSVGASG-DLAPLA 150
Query: 70 HIIL 73
H+ L
Sbjct: 151 HMSL 154
>pdb|3QCL|A Chain A, Human Receptor Protein Tyrosine Phosphatase Gamma, Domain
1, In Complex With
2-[(3,4-Dichlorobenzyl)sulfanyl]-4-(4-Hydroxybut-1-Yn-1-
Yl)benzoic Acid
pdb|3QCN|A Chain A, Human Receptor Protein Tyrosine Phosphatase Gamma, Domain
1, Trigonal Crystal Form
Length = 310
Score = 26.6 bits (57), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 22/101 (21%), Positives = 41/101 (40%), Gaps = 6/101 (5%)
Query: 30 RGEENDLIEATCRKTSYPDL-----CIKTLRSSPGSSGADVKALAHIILE-SASAYCNDT 83
+G +N+ + T +PD+ + L SS A + +++ SA T
Sbjct: 192 KGRQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARMPETGPVLVHCSAGVGRTGT 251
Query: 84 YEQVKKLLNETKDKAMRNCLDVCFQVYDLAIYEIPTAIKYL 124
Y + +L + KDK+ N L + Y + T +Y+
Sbjct: 252 YIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYI 292
>pdb|3QCB|A Chain A, Human Receptor Protein Tyrosine Phosphatase Gamma, Domain
1, Apo
pdb|3QCB|B Chain B, Human Receptor Protein Tyrosine Phosphatase Gamma, Domain
1, Apo
pdb|3QCC|A Chain A, Human Receptor Protein Tyrosine Phosphatase Gamma, Domain
1, In Complex With Vanadate, Orthorhombic Crystal Form
pdb|3QCC|B Chain B, Human Receptor Protein Tyrosine Phosphatase Gamma, Domain
1, In Complex With Vanadate, Orthorhombic Crystal Form
pdb|3QCD|A Chain A, Human Receptor Protein Tyrosine Phosphatase Gamma, Domain
1, In Complex With Vanadate, Trigonal Crystal Form
pdb|3QCE|A Chain A, Human Receptor Protein Tyrosine Phosphatase Gamma, Domain
1, In Complex With
3-[(3,4-Dichlorobenzyl)sulfanyl]thiophene-2-Carboxylic
Acid Via Soaking
pdb|3QCE|B Chain B, Human Receptor Protein Tyrosine Phosphatase Gamma, Domain
1, In Complex With
3-[(3,4-Dichlorobenzyl)sulfanyl]thiophene-2-Carboxylic
Acid Via Soaking
pdb|3QCF|A Chain A, Human Receptor Protein Tyrosine Phosphatase Gamma, Domain
1, In Complex With
3-[(3,4-Dichlorobenzyl)sulfanyl]thiophene-2-Carboxylic
Acid Via Co-Crystallization
pdb|3QCF|B Chain B, Human Receptor Protein Tyrosine Phosphatase Gamma, Domain
1, In Complex With
3-[(3,4-Dichlorobenzyl)sulfanyl]thiophene-2-Carboxylic
Acid Via Co-Crystallization
pdb|3QCG|A Chain A, Human Receptor Protein Tyrosine Phosphatase Gamma, Domain
1, In Complex With
3-[(3-Bromo-4-Chlorobenzyl)sulfanyl]thiophene-2-
Carboxylic Acid
pdb|3QCH|A Chain A, Human Receptor Protein Tyrosine Phosphatase Gamma, Domain
1, In Complex With
3-[(3,4-Dichlorobenzyl)sulfanyl]-N-(Methylsulfonyl)
Thiophene-2-Carboxamide
pdb|3QCI|A Chain A, Human Receptor Protein Tyrosine Phosphatase Gamma, Domain
1, In Complex With
N-[(3-Aminophenyl)sulfonyl]-3-[(3,4-Dichlorobenzyl)
Sulfanyl]thiophene-2-Carboxamide
pdb|3QCJ|A Chain A, Human Receptor Protein Tyrosine Phosphatase Gamma, Domain
1, In Complex With
5-[({3-[(3,4-Dichlorobenzyl)sulfanyl]thiophen-2-
Yl}carbonyl)sulfamoyl]-2-Methoxybenzoic Acid
pdb|3QCK|A Chain A, Human Receptor Protein Tyrosine Phosphatase Gamma, Domain
1, In Complex With
2-[(3,4-Dichlorobenzyl)sulfanyl]benzoic Acid
Length = 310
Score = 26.2 bits (56), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 22/101 (21%), Positives = 41/101 (40%), Gaps = 6/101 (5%)
Query: 30 RGEENDLIEATCRKTSYPDL-----CIKTLRSSPGSSGADVKALAHIILE-SASAYCNDT 83
+G +N+ + T +PD+ + L SS A + +++ SA T
Sbjct: 192 KGRQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARMPETGPVLVHCSAGVGRTGT 251
Query: 84 YEQVKKLLNETKDKAMRNCLDVCFQVYDLAIYEIPTAIKYL 124
Y + +L + KDK+ N L + Y + T +Y+
Sbjct: 252 YIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYI 292
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,233,861
Number of Sequences: 62578
Number of extensions: 206056
Number of successful extensions: 575
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 569
Number of HSP's gapped (non-prelim): 26
length of query: 183
length of database: 14,973,337
effective HSP length: 93
effective length of query: 90
effective length of database: 9,153,583
effective search space: 823822470
effective search space used: 823822470
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (23.1 bits)