Query 042545
Match_columns 183
No_of_seqs 102 out of 951
Neff 8.3
Searched_HMMs 46136
Date Fri Mar 29 07:13:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042545.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042545hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01614 PME_inhib pectineste 100.0 8.1E-34 1.8E-38 216.9 19.2 153 31-183 26-178 (178)
2 smart00856 PMEI Plant invertas 100.0 3.8E-32 8.3E-37 201.5 15.4 147 32-178 2-148 (148)
3 PF04043 PMEI: Plant invertase 100.0 1.2E-29 2.5E-34 188.6 14.6 145 33-178 3-152 (152)
4 PLN02995 Probable pectinestera 100.0 1.4E-27 3E-32 208.1 18.0 176 1-182 5-190 (539)
5 PLN02468 putative pectinestera 100.0 1.6E-27 3.4E-32 208.9 18.3 147 34-182 64-216 (565)
6 PLN02484 probable pectinestera 100.0 1.7E-27 3.6E-32 209.4 17.4 149 33-182 72-226 (587)
7 PLN02708 Probable pectinestera 100.0 3.2E-27 7E-32 206.5 18.1 150 32-182 42-195 (553)
8 PLN02314 pectinesterase 100.0 2.7E-27 5.9E-32 208.4 17.6 150 33-182 69-233 (586)
9 PLN02313 Pectinesterase/pectin 99.9 3.2E-26 6.8E-31 201.5 18.3 149 33-182 58-219 (587)
10 PLN02217 probable pectinestera 99.9 8.3E-26 1.8E-30 200.0 16.2 149 33-182 52-207 (670)
11 PLN02416 probable pectinestera 99.9 1.7E-25 3.6E-30 195.2 17.5 151 32-182 36-191 (541)
12 PLN02506 putative pectinestera 99.9 2.2E-25 4.8E-30 194.1 16.5 152 31-182 31-191 (537)
13 PLN02301 pectinesterase/pectin 99.9 4.2E-25 9.1E-30 192.6 17.6 147 33-182 49-200 (548)
14 PLN02990 Probable pectinestera 99.9 4.2E-25 9.2E-30 193.7 16.9 146 34-182 53-209 (572)
15 PLN02197 pectinesterase 99.9 7.7E-25 1.7E-29 192.1 16.7 145 33-182 37-190 (588)
16 PLN02745 Putative pectinestera 99.9 5.9E-25 1.3E-29 193.5 15.8 145 34-182 79-231 (596)
17 PLN02713 Probable pectinestera 99.9 7.9E-25 1.7E-29 191.9 14.9 146 33-181 31-188 (566)
18 PLN02698 Probable pectinestera 99.9 1E-23 2.2E-28 182.6 14.9 147 31-182 19-176 (497)
19 PLN03043 Probable pectinestera 99.9 3.3E-23 7.1E-28 180.9 13.6 143 38-181 3-156 (538)
20 PLN02933 Probable pectinestera 99.8 6.5E-19 1.4E-23 153.0 16.2 120 62-182 48-181 (530)
21 PLN02201 probable pectinestera 99.8 1.8E-18 3.9E-23 150.3 14.7 117 65-181 37-162 (520)
22 PLN02488 probable pectinestera 99.8 3.8E-18 8.2E-23 146.8 12.5 142 39-182 3-159 (509)
23 PLN02170 probable pectinestera 99.6 1.5E-15 3.2E-20 131.9 10.7 124 45-182 58-184 (529)
24 PLN02916 pectinesterase family 99.5 6.1E-13 1.3E-17 115.2 11.0 84 95-182 57-140 (502)
25 PF07870 DUF1657: Protein of u 72.6 18 0.00038 21.6 6.7 45 74-118 3-47 (50)
26 KOG4841 Dolichol-phosphate man 62.8 6.5 0.00014 26.3 2.0 27 101-127 65-91 (95)
27 PF09680 Tiny_TM_bacill: Prote 55.0 13 0.00029 18.6 1.9 14 6-19 6-19 (24)
28 TIGR01732 tiny_TM_bacill conse 54.8 16 0.00034 18.8 2.1 17 5-21 7-23 (26)
29 PF02953 zf-Tim10_DDP: Tim10/D 54.0 29 0.00063 21.5 3.9 28 95-122 37-64 (66)
30 PF08285 DPM3: Dolichol-phosph 49.9 12 0.00026 25.4 1.7 27 101-127 61-87 (91)
31 KOG4514 Uncharacterized conser 49.7 85 0.0019 24.2 6.4 95 62-174 121-217 (222)
32 TIGR00208 fliS flagellar biosy 48.7 96 0.0021 22.0 7.0 42 108-149 26-67 (124)
33 KOG1733 Mitochondrial import i 45.3 96 0.0021 21.1 7.4 59 64-122 17-85 (97)
34 PF02561 FliS: Flagellar prote 44.7 39 0.00085 23.8 3.8 23 63-85 16-38 (122)
35 PF09976 TPR_21: Tetratricopep 39.6 1.4E+02 0.003 21.2 6.6 74 53-138 37-110 (145)
36 PLN03207 stomagen; Provisional 39.5 23 0.0005 24.4 1.8 20 3-22 7-26 (113)
37 PF07172 GRP: Glycine rich pro 36.8 22 0.00048 24.3 1.4 12 10-21 7-18 (95)
38 COG1516 FliS Flagellin-specifi 34.1 90 0.002 22.7 4.3 33 107-139 25-57 (132)
39 PRK05685 fliS flagellar protei 33.7 1.8E+02 0.0039 20.8 7.2 32 108-139 30-61 (132)
40 KOG3480 Mitochondrial import i 33.4 1.2E+02 0.0026 20.4 4.4 36 96-131 50-85 (90)
41 PF14346 DUF4398: Domain of un 32.5 1.2E+02 0.0026 20.5 4.6 34 109-142 41-74 (103)
42 TIGR03504 FimV_Cterm FimV C-te 31.4 81 0.0017 18.2 3.0 26 116-141 2-27 (44)
43 PRK09591 celC cellobiose phosp 28.3 1.2E+02 0.0027 20.9 4.0 28 112-139 19-46 (104)
44 cd00215 PTS_IIA_lac PTS_IIA, P 27.8 1.3E+02 0.0028 20.5 4.0 28 112-139 14-41 (97)
45 CHL00183 petJ cytochrome c553; 27.1 72 0.0016 21.7 2.8 35 10-44 5-40 (108)
46 PRK09634 nusB transcription an 26.8 2.1E+02 0.0045 22.5 5.5 91 63-153 28-137 (207)
47 PF02255 PTS_IIA: PTS system, 26.3 1.5E+02 0.0032 20.1 4.1 29 112-140 13-41 (96)
48 TIGR00823 EIIA-LAC phosphotran 25.1 1.5E+02 0.0033 20.2 4.0 27 113-139 17-43 (99)
49 PF02203 TarH: Tar ligand bind 23.1 2.9E+02 0.0063 19.8 9.0 57 77-133 88-146 (171)
50 KOG2220 Predicted signal trans 23.1 2.2E+02 0.0048 26.7 5.8 90 31-121 130-222 (714)
51 PF02609 Exonuc_VII_S: Exonucl 22.6 1.8E+02 0.0039 17.2 4.4 42 110-151 1-44 (53)
52 COG1729 Uncharacterized protei 22.2 1.1E+02 0.0023 25.1 3.2 21 130-150 178-198 (262)
53 PHA00442 host recBCD nuclease 21.9 1.8E+02 0.0039 17.7 3.3 40 73-115 8-51 (59)
54 PF10510 PIG-S: Phosphatidylin 21.7 5.8E+02 0.013 22.8 8.6 83 65-153 387-472 (517)
No 1
>TIGR01614 PME_inhib pectinesterase inhibitor domain. This model describes a plant domain of about 200 amino acids, characterized by four conserved Cys residues, shown in a pectinesterase inhibitor from Kiwi to form two disulfide bonds: first to second and third to fourth. Roughly half the members of this family have the region described by this model followed immediately by a pectinesterase domain, pfam01095. This suggests that the pairing of the enzymatic domain and its inhibitor reflects a conserved regulatory mechanism for this enzyme family.
Probab=100.00 E-value=8.1e-34 Score=216.92 Aligned_cols=153 Identities=36% Similarity=0.641 Sum_probs=144.0
Q ss_pred CCchHHHHHHccCCCCccchHhhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHH
Q 042545 31 GEENDLIEATCRKTSYPDLCIKTLRSSPGSSGADVKALAHIILESASAYCNDTYEQVKKLLNETKDKAMRNCLDVCFQVY 110 (183)
Q Consensus 31 ~~~~~~i~~~C~~t~~~~~C~~~L~~~p~s~~~d~~~L~~~ai~~a~~~~~~a~~~~~~l~~~~~~~~~~~al~~C~~~y 110 (183)
.++...|+++|++|+||++|+++|.++|+++.+|+++|+.++++.+..+++.+.+++.++.++.+++..+.++++|.+.|
T Consensus 26 ~~~~~~i~~~C~~t~~~~~C~~~L~~~~~~~~ad~~~la~~ai~~a~~~~~~~~~~i~~l~~~~~~~~~~~al~~C~~~y 105 (178)
T TIGR01614 26 NATQSLIKRICKKTEYPNFCISTLKSDPSSAKADLQGLANISVSAALSNASDTLDHISKLLLTKGDPRDKSALEDCVELY 105 (178)
T ss_pred cchHHHHHHHHcCCCChHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHH
Confidence 46788999999999999999999999999888899999999999999999999999999988767899999999999999
Q ss_pred HHHHHHHHHHHHHHhcCChhhHHHHHHhhhcchhhhHhhccCCCCCCCCcchhhhhHHHHHHHHHHHHHHhcC
Q 042545 111 DLAIYEIPTAIKYLESGDYDSAVQYANDGIIESDTCESSFSEFPEIPKSPLTDRNNGLTNLCTIVLDMINLLK 183 (183)
Q Consensus 111 ~~a~~~L~~A~~~l~~~~~~~a~~~lsaa~~~~~tC~d~f~~~~~~~~spl~~~~~~~~~l~siaLaiv~~L~ 183 (183)
++++++|+++...+..++|+++++|+++|++++++|+|+|.+.++..++|+..+++++.+|++|+|+|+++|+
T Consensus 106 ~~a~~~L~~a~~~l~~~~~~d~~~~ls~a~~~~~tC~d~f~~~~~~~~~~l~~~~~~~~~l~s~alai~~~~~ 178 (178)
T TIGR01614 106 SDAVDALDKALASLKSKDYSDAETWLSSALTDPSTCEDGFEELGGIVKSPLTKRNNNVKKLSSITLAIIKMLT 178 (178)
T ss_pred HHHHHHHHHHHHHHHhcchhHHHHHHHHHHcccchHHHHhccCCCCccchHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999987532278999999999999999999999985
No 2
>smart00856 PMEI Plant invertase/pectin methylesterase inhibitor. This domain inhibits pectin methylesterases (PMEs) and invertases through formation of a non-covalent 1:1 complex PUBMED:8521860. It has been implicated in the regulation of fruit development, carbohydrate metabolism and cell wall extension. It may also be involved in inhibiting microbial pathogen PMEs. It has been observed that it is often expressed as a large inactive preprotein PUBMED:8521860. It is also found at the N-termini of PMEs predicted from DNA sequences, suggesting that both PMEs and their inhibitors are expressed as a single polyprotein and subsequently processed. It has two disulphide bridges and is mainly alpha-helical PUBMED:10880981.
Probab=100.00 E-value=3.8e-32 Score=201.49 Aligned_cols=147 Identities=35% Similarity=0.636 Sum_probs=137.6
Q ss_pred CchHHHHHHccCCCCccchHhhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHH
Q 042545 32 EENDLIEATCRKTSYPDLCIKTLRSSPGSSGADVKALAHIILESASAYCNDTYEQVKKLLNETKDKAMRNCLDVCFQVYD 111 (183)
Q Consensus 32 ~~~~~i~~~C~~t~~~~~C~~~L~~~p~s~~~d~~~L~~~ai~~a~~~~~~a~~~~~~l~~~~~~~~~~~al~~C~~~y~ 111 (183)
...+.|+.+|++|+||.+|+++|.++|+++.+|+.+|+.++++.++.++..+..+++++.+...++..+.+|++|.++|+
T Consensus 2 ~~~~~i~~~C~~T~~~~~C~~~L~~~~~~~~~d~~~l~~~ai~~~~~~a~~~~~~~~~l~~~~~~~~~~~al~~C~~~y~ 81 (148)
T smart00856 2 PTSKLIDSICKSTDYPDFCVSSLSSDPSSSATDPKDLAKIAIKVALSQATKTLSFISSLLKKTKDPRLKAALKDCLELYD 81 (148)
T ss_pred CHHHHHHHHhcCCCChHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 35678999999999999999999999998888999999999999999999999999999887889999999999999999
Q ss_pred HHHHHHHHHHHHHhcCChhhHHHHHHhhhcchhhhHhhccCCCCCCCCcchhhhhHHHHHHHHHHHH
Q 042545 112 LAIYEIPTAIKYLESGDYDSAVQYANDGIIESDTCESSFSEFPEIPKSPLTDRNNGLTNLCTIVLDM 178 (183)
Q Consensus 112 ~a~~~L~~A~~~l~~~~~~~a~~~lsaa~~~~~tC~d~f~~~~~~~~spl~~~~~~~~~l~siaLai 178 (183)
.++++|++|+.++..++|+++++|||+|++++++|+|||.+.++..++||..++.++.+|++|+|+|
T Consensus 82 ~a~~~L~~a~~~l~~~~~~d~~~~lsaa~t~~~tC~d~f~~~~~~~~~~l~~~~~~~~~l~s~aLai 148 (148)
T smart00856 82 DAVDSLEKALEELKSGDYDDVATWLSAALTDQDTCLDGFEENDDKVKSPLTKRNDNLEKLTSNALAI 148 (148)
T ss_pred HHHHHHHHHHHHHHhcchhHHHHHHHHHhcCcchHHhHhccCCcchhHHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999754322788999999999999999986
No 3
>PF04043 PMEI: Plant invertase/pectin methylesterase inhibitor; InterPro: IPR006501 This entry represents a plant domain of about 200 amino acids, characterised by four conserved cysteine residues. This domain inhibits pectinesterase/pectin methylesterases (PMEs) and invertases through formation of a non-covalent 1:1 complex []. It has been implicated in the regulation of fruit development, carbohydrate metabolism and cell wall extension. It may also be involved in inhibiting microbial pathogen PMEs. It has been observed that it is often expressed as a large inactive preprotein []. This domain is also found at the N-termini of PMEs predicted from DNA sequences, suggesting that both PMEs and their inhibitors are expressed as a single polyprotein and subsequently processed. It has two disulphide bridges and is mainly alpha-helical in structure [].; GO: 0004857 enzyme inhibitor activity, 0030599 pectinesterase activity; PDB: 1X90_A 1X8Z_C 1X91_A 1XG2_B 1RJ4_D 2CJ4_B 2XQR_F 2CJ7_A 2CJ8_A 2CJ6_A ....
Probab=99.97 E-value=1.2e-29 Score=188.57 Aligned_cols=145 Identities=35% Similarity=0.617 Sum_probs=129.4
Q ss_pred chHHHHHHccCCCCcc-chHhhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-CCChHHHHHHHHHHHHH
Q 042545 33 ENDLIEATCRKTSYPD-LCIKTLRSSPGSSGADVKALAHIILESASAYCNDTYEQVKKLLNE-TKDKAMRNCLDVCFQVY 110 (183)
Q Consensus 33 ~~~~i~~~C~~t~~~~-~C~~~L~~~p~s~~~d~~~L~~~ai~~a~~~~~~a~~~~~~l~~~-~~~~~~~~al~~C~~~y 110 (183)
....|+++|++|+||. +|+.+|.++|.++..|+.+|+.++++.+..++..+..+++++.+. .++|..+.+|++|.+.|
T Consensus 3 ~~~~I~~~C~~T~~~~~~C~~~L~~~~~~~~~d~~~l~~~av~~a~~~~~~a~~~~~~l~~~~~~~~~~~~~l~~C~~~y 82 (152)
T PF04043_consen 3 TSSLIQDICKSTPYPYNLCLSTLSSDPSSSAADPKELARIAVQAALSNATSASAFISKLLKNPSKDPNAKQALQDCQELY 82 (152)
T ss_dssp -HHHHHHHHCTSS--HHHHHHHHHTCCCGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-S-THHHHHHHHHHHHHH
T ss_pred hHHHHHHHhhCCCCCcHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCHHhhHHHHHHHHHH
Confidence 5678999999999666 999999999877778999999999999999999999999999986 88999999999999999
Q ss_pred HHHHHHHHHHHHHH--hcCChhhHHHHHHhhhcchhhhHhhcc-CCCCCCCCcchhhhhHHHHHHHHHHHH
Q 042545 111 DLAIYEIPTAIKYL--ESGDYDSAVQYANDGIIESDTCESSFS-EFPEIPKSPLTDRNNGLTNLCTIVLDM 178 (183)
Q Consensus 111 ~~a~~~L~~A~~~l--~~~~~~~a~~~lsaa~~~~~tC~d~f~-~~~~~~~spl~~~~~~~~~l~siaLai 178 (183)
.+++++|++++.++ ..++|+++++||+++++++++|+++|. ..++. ++||...+.++.+|++|+|+|
T Consensus 83 ~~a~~~l~~a~~~l~~~~~~~~~~~~~lsaa~~~~~tC~~~f~~~~~~~-~~~l~~~~~~~~~l~s~aLai 152 (152)
T PF04043_consen 83 DDAVDSLQRALEALNSKNGDYDDARTWLSAALTNQDTCEDGFEEAGSPV-KSPLVQRNDNVEKLSSNALAI 152 (152)
T ss_dssp HHHHHHHHHHHHHH--HHT-HHHHHHHHHHHHHHHHHHHHHC-TTSSS---HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHHhcccCCCc-cchHHHHHHHHHHHHHHHhhC
Confidence 99999999999999 999999999999999999999999994 22333 789999999999999999997
No 4
>PLN02995 Probable pectinesterase/pectinesterase inhibitor
Probab=99.96 E-value=1.4e-27 Score=208.11 Aligned_cols=176 Identities=19% Similarity=0.331 Sum_probs=141.7
Q ss_pred CcchhHHHHHHHHHHHHHHHhcCCCccccCCCchHHHHHHccCCCCccchHhhhccCCCCCC-CCHHHHHHHHHHHHHHH
Q 042545 1 MENINIASVMMFLLMTLCFLSNKPGIVGVRGEENDLIEATCRKTSYPDLCIKTLRSSPGSSG-ADVKALAHIILESASAY 79 (183)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~t~~~~~C~~~L~~~p~s~~-~d~~~L~~~ai~~a~~~ 79 (183)
|..|.|-|+.+|+++++|+++.+...+ ++ ...|...|..|.||++|+++|.+.|.+.+ +++.+++++++++++.+
T Consensus 5 ~~~~~~~~~~~ll~~~~~~~~~~~~~~---~~-~~~Irs~C~~T~YP~lC~sSLs~~~~s~s~~~~~~l~~~~~~aAl~~ 80 (539)
T PLN02995 5 MQKISFLSLHLLLLLLLCVHPLTTVAD---GN-STDIDGWCDKTPYPDPCKCYFKNHNGFRQPTQISEFRVMLVEAAMDR 80 (539)
T ss_pred hhhhhHHHHHHHHHHHHHhhhcccCCC---Ch-hHHHHhhcCCCCChHHHHHHHhhccccccccCccHHHHHHHHHHHHH
Confidence 556777777777776666655333221 22 45899999999999999999999887544 38999999999999999
Q ss_pred HHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-------ChhhHHHHHHhhhcchhhhHhhccC
Q 042545 80 CNDTYEQVKKLLNETKDKAMRNCLDVCFQVYDLAIYEIPTAIKYLESG-------DYDSAVQYANDGIIESDTCESSFSE 152 (183)
Q Consensus 80 ~~~a~~~~~~l~~~~~~~~~~~al~~C~~~y~~a~~~L~~A~~~l~~~-------~~~~a~~~lsaa~~~~~tC~d~f~~ 152 (183)
+..+.+.+..+.+...+++.+.|++||.|+|++++++|++++..+... .+.|+++|||+|++|++||.|||.+
T Consensus 81 a~sa~~~i~~l~~~~~~~r~~~AL~DC~ELl~DAvD~L~~Sl~~l~~~~~~~~~~~~~DvqTWLSAALT~q~TC~DGF~~ 160 (539)
T PLN02995 81 AISARDELTNSGKNCTDFKKQAVLADCIDLYGDTIMQLNRTLQGVSPKAGAAKRCTDFDAQTWLSTALTNTETCRRGSSD 160 (539)
T ss_pred HHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHhcchhhhhhhhcc
Confidence 999999999887655788999999999999999999999999988632 3579999999999999999999986
Q ss_pred CCCCCCCcchhh--hhHHHHHHHHHHHHHHhc
Q 042545 153 FPEIPKSPLTDR--NNGLTNLCTIVLDMINLL 182 (183)
Q Consensus 153 ~~~~~~spl~~~--~~~~~~l~siaLaiv~~L 182 (183)
.+ + +..+... +.++.+|++|+|+|++++
T Consensus 161 ~~-~-~~~v~~~v~~~~~~~ltSNaLAi~~~l 190 (539)
T PLN02995 161 LN-V-SDFITPIVSNTKISHLISNCLAVNGAL 190 (539)
T ss_pred cc-c-hhhhhhhhhhhhHHHHHHHHHHHhhhh
Confidence 42 2 1222222 367999999999999875
No 5
>PLN02468 putative pectinesterase/pectinesterase inhibitor
Probab=99.96 E-value=1.6e-27 Score=208.92 Aligned_cols=147 Identities=20% Similarity=0.274 Sum_probs=132.4
Q ss_pred hHHHHHHccCCCCccchHhhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhc--CCChHHHHHHHHHHHHHH
Q 042545 34 NDLIEATCRKTSYPDLCIKTLRSSPGSSGADVKALAHIILESASAYCNDTYEQVKKLLNE--TKDKAMRNCLDVCFQVYD 111 (183)
Q Consensus 34 ~~~i~~~C~~t~~~~~C~~~L~~~p~s~~~d~~~L~~~ai~~a~~~~~~a~~~~~~l~~~--~~~~~~~~al~~C~~~y~ 111 (183)
...|+..|+.|.||++|+++|.+.|.+...+|++|+++++++++.++..+...+.++... ..+++.+.|++||.++|+
T Consensus 64 ~~~Ik~~C~~T~Yp~lC~sSLs~~~~s~~~~p~~L~~~al~vti~~~~~a~~~~s~l~~~~~~~d~~~k~AL~DC~ELld 143 (565)
T PLN02468 64 STSVKAVCDVTLYKDSCYETLAPAPKASQLQPEELFKYAVKVAINELSKASQAFSNSEGFLGVKDNMTNAALNACQELLD 143 (565)
T ss_pred hHHHHHhccCCCChHHHHHHHhhcCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCChHHHHHHHHHHHHHH
Confidence 458999999999999999999999987778999999999999999999999888877643 468899999999999999
Q ss_pred HHHHHHHHHHHHHh----cCChhhHHHHHHhhhcchhhhHhhccCCCCCCCCcchhhhhHHHHHHHHHHHHHHhc
Q 042545 112 LAIYEIPTAIKYLE----SGDYDSAVQYANDGIIESDTCESSFSEFPEIPKSPLTDRNNGLTNLCTIVLDMINLL 182 (183)
Q Consensus 112 ~a~~~L~~A~~~l~----~~~~~~a~~~lsaa~~~~~tC~d~f~~~~~~~~spl~~~~~~~~~l~siaLaiv~~L 182 (183)
+++++|++++.++. ...++|+++|||+|++|++||.|||.+. ++ +++|.....++.+|++|+|+|++.+
T Consensus 144 daid~L~~Sl~~l~~~~~~~~~dDl~TWLSAAlTnq~TClDGF~e~-~v-k~~~~~~l~n~~eLtSNaLAIi~~l 216 (565)
T PLN02468 144 LAIDNLNNSLTSSGGVSVLDNVDDLRTWLSSAGTYQETCIDGLAEP-NL-KSFGENHLKNSTELTSNSLAIITWI 216 (565)
T ss_pred HHHHHHHHHHHHHhccccccchHHHHHHHHHHhcchhhhhhhhccc-Cc-hHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 99999999999886 3446899999999999999999999864 44 7889889999999999999999864
No 6
>PLN02484 probable pectinesterase/pectinesterase inhibitor
Probab=99.95 E-value=1.7e-27 Score=209.36 Aligned_cols=149 Identities=22% Similarity=0.395 Sum_probs=132.2
Q ss_pred chHHHHHHccCCCCccchHhhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHH
Q 042545 33 ENDLIEATCRKTSYPDLCIKTLRSSPGSSGADVKALAHIILESASAYCNDTYEQVKKLLNETKDKAMRNCLDVCFQVYDL 112 (183)
Q Consensus 33 ~~~~i~~~C~~t~~~~~C~~~L~~~p~s~~~d~~~L~~~ai~~a~~~~~~a~~~~~~l~~~~~~~~~~~al~~C~~~y~~ 112 (183)
....|+++|+.|.||++|+++|.+.|.+..++|++|+++++++++.++..+......+.....+++.+.||+||.++|++
T Consensus 72 ~~~~Iks~C~~T~YP~lC~sSLs~~p~s~~~~p~~L~~~slnvtl~~~~~a~~~s~~l~~~~~~~r~k~AL~DClELldd 151 (587)
T PLN02484 72 PTQAISKTCSKTRFPNLCVDSLLDFPGSLTASESDLIHISFNMTLQHFSKALYLSSTISYVQMPPRVRSAYDSCLELLDD 151 (587)
T ss_pred hhHHHHHhccCCCChHHHHHHHhhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCHHHHHHHHHHHHHHHH
Confidence 34589999999999999999999998877789999999999999999999877766554456788999999999999999
Q ss_pred HHHHHHHHHHHHhc----CChhhHHHHHHhhhcchhhhHhhccCCC--CCCCCcchhhhhHHHHHHHHHHHHHHhc
Q 042545 113 AIYEIPTAIKYLES----GDYDSAVQYANDGIIESDTCESSFSEFP--EIPKSPLTDRNNGLTNLCTIVLDMINLL 182 (183)
Q Consensus 113 a~~~L~~A~~~l~~----~~~~~a~~~lsaa~~~~~tC~d~f~~~~--~~~~spl~~~~~~~~~l~siaLaiv~~L 182 (183)
++++|++++..+.. ..++|+++|||+|++|++||+|||.+.+ .+ +++|...+.++.+|++|+|+|++.+
T Consensus 152 Aid~L~~Sl~~l~~~~~~~~~~DvkTWLSAALTnq~TClDGF~e~~~~~v-k~~m~~~l~~l~~LtSNALAIi~~~ 226 (587)
T PLN02484 152 SVDALSRALSSVVPSSGGGSPQDVVTWLSAALTNHDTCTEGFDGVNGGEV-KDQMTGALKDLSELVSNCLAIFSAS 226 (587)
T ss_pred HHHHHHHHHHHHhccccccchHHHHhHHHHHhccHhhHHHHhhcccccch-HHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 99999999999875 3478999999999999999999998652 24 6789999999999999999999875
No 7
>PLN02708 Probable pectinesterase/pectinesterase inhibitor
Probab=99.95 E-value=3.2e-27 Score=206.53 Aligned_cols=150 Identities=15% Similarity=0.236 Sum_probs=127.2
Q ss_pred CchHHHHHHccCCCCccchHhhhccCCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC-CChHHHHHHHHHHHH
Q 042545 32 EENDLIEATCRKTSYPDLCIKTLRSSPGS-SGADVKALAHIILESASAYCNDTYEQVKKLLNET-KDKAMRNCLDVCFQV 109 (183)
Q Consensus 32 ~~~~~i~~~C~~t~~~~~C~~~L~~~p~s-~~~d~~~L~~~ai~~a~~~~~~a~~~~~~l~~~~-~~~~~~~al~~C~~~ 109 (183)
.....|+..|+.|+||++|+++|++.|.. ...++.++++.+++++++++..+...++.+.+.. .+.....|++||.|+
T Consensus 42 ~~~~~I~s~C~~T~YP~lC~sSLs~~~~~~~~~~p~~Li~aAL~vsl~~a~~a~~~v~~L~~~~~~~~~~~~AL~DC~EL 121 (553)
T PLN02708 42 STPPQILLACNATRFPDTCVSSLSNAGRVPPDPKPIQIIQSAISVSRENLKTAQSMVKSILDSSAGNVNRTTAATNCLEV 121 (553)
T ss_pred CccHHHHHhccCCCCcHHHHHHHhhccCCccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHH
Confidence 45778999999999999999999998853 4458999999999999999999999999887642 333345899999999
Q ss_pred HHHHHHHHHHHHHHHhcCChhhHHHHHHhhhcchhhhHhhccCCCC--CCCCcchhhhhHHHHHHHHHHHHHHhc
Q 042545 110 YDLAIYEIPTAIKYLESGDYDSAVQYANDGIIESDTCESSFSEFPE--IPKSPLTDRNNGLTNLCTIVLDMINLL 182 (183)
Q Consensus 110 y~~a~~~L~~A~~~l~~~~~~~a~~~lsaa~~~~~tC~d~f~~~~~--~~~spl~~~~~~~~~l~siaLaiv~~L 182 (183)
|++++++|++++..+....++|+++|||+|++|++||.|||.+.+. ..+..+ ...+++.+|++|+|+|++.+
T Consensus 122 lddavd~L~~Sl~~L~~~~~~DvqTWLSAALTnq~TClDGF~~~~~~~~v~~~~-~~L~nvs~LtSNSLAmv~~~ 195 (553)
T PLN02708 122 LSNSEHRISSTDIALPRGKIKDARAWMSAALLYQYDCWSALKYVNDTSQVNDTM-SFLDSLIGLTSNALSMMASY 195 (553)
T ss_pred HHHHHHHHHHHHHHhhhcchHHHHHHHHHHhccHhHHHHHhhccCccchHHHHH-HHHHHHHHHHHHHHHhhhcc
Confidence 9999999999999998888999999999999999999999986431 102223 45678999999999999863
No 8
>PLN02314 pectinesterase
Probab=99.95 E-value=2.7e-27 Score=208.39 Aligned_cols=150 Identities=24% Similarity=0.425 Sum_probs=130.2
Q ss_pred chHHHHHHccCCCCccchHhhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHH
Q 042545 33 ENDLIEATCRKTSYPDLCIKTLRSSPGSSGADVKALAHIILESASAYCNDTYEQVKKLLNETKDKAMRNCLDVCFQVYDL 112 (183)
Q Consensus 33 ~~~~i~~~C~~t~~~~~C~~~L~~~p~s~~~d~~~L~~~ai~~a~~~~~~a~~~~~~l~~~~~~~~~~~al~~C~~~y~~ 112 (183)
....|+.+|+.|.||++|+++|.+.|.+..++|++|+++++++++++++.+...++++.+...+++.+.||+||.++|++
T Consensus 69 ~~~~Iks~C~~T~YP~lC~sSLs~~p~s~~~~p~~L~~~al~vti~~a~~a~~~~~~L~~~~~~~~~k~AL~DC~Elldd 148 (586)
T PLN02314 69 PATSLKAVCSVTRYPESCISSISSLPTSNTTDPETLFKLSLKVAIDELSKLSDLPQKLINETNDERLKSALRVCETLFDD 148 (586)
T ss_pred HHHHHHHhccCCCChHHHHHHHhcccCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Confidence 34689999999999999999999999877789999999999999999999999999987766789999999999999999
Q ss_pred HHHHHHHHHHHHhcC---------ChhhHHHHHHhhhcchhhhHhhccCCCCC--CCCc----chhhhhHHHHHHHHHHH
Q 042545 113 AIYEIPTAIKYLESG---------DYDSAVQYANDGIIESDTCESSFSEFPEI--PKSP----LTDRNNGLTNLCTIVLD 177 (183)
Q Consensus 113 a~~~L~~A~~~l~~~---------~~~~a~~~lsaa~~~~~tC~d~f~~~~~~--~~sp----l~~~~~~~~~l~siaLa 177 (183)
++++|++++..+..+ .++|+++|||+|+++++||+|||.+.+.. ..++ +.....++.+|++|+|+
T Consensus 149 Aid~L~~Sl~~l~~~~~~~~~~~~~~~Dv~TWLSAALT~q~TClDGF~e~~~~k~~~s~vk~~~~~~l~n~~eLtSNaLA 228 (586)
T PLN02314 149 AIDRLNDSISSMQVGEGEKILSSSKIDDLKTWLSATITDQETCIDALQELSQNKYANSTLTNEVKTAMSNSTEFTSNSLA 228 (586)
T ss_pred HHHHHHHHHHHHhhcccccccccccHHHHHhHHHHHhcCHhHHHHhhhccccccccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999988532 45899999999999999999999864210 0233 34445789999999999
Q ss_pred HHHhc
Q 042545 178 MINLL 182 (183)
Q Consensus 178 iv~~L 182 (183)
|++++
T Consensus 229 Ii~~l 233 (586)
T PLN02314 229 IVSKI 233 (586)
T ss_pred HHhhh
Confidence 99874
No 9
>PLN02313 Pectinesterase/pectinesterase inhibitor
Probab=99.94 E-value=3.2e-26 Score=201.53 Aligned_cols=149 Identities=21% Similarity=0.371 Sum_probs=130.6
Q ss_pred chHHHHHHccCCCCccchHhhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhc--CCChHHHHHHHHHHHHH
Q 042545 33 ENDLIEATCRKTSYPDLCIKTLRSSPGSSGADVKALAHIILESASAYCNDTYEQVKKLLNE--TKDKAMRNCLDVCFQVY 110 (183)
Q Consensus 33 ~~~~i~~~C~~t~~~~~C~~~L~~~p~s~~~d~~~L~~~ai~~a~~~~~~a~~~~~~l~~~--~~~~~~~~al~~C~~~y 110 (183)
....|+.+|+.|.||++|+++|++.|.+...++.+|+.+++++++.++..+...++.+.+. ..+++.+.|++||.|+|
T Consensus 58 ~~~~Iks~C~~T~YP~~C~ssLs~~~~~~~~~~~~Li~~sL~vtl~~a~~a~~~vs~L~~~~~~l~~r~k~AL~DClELl 137 (587)
T PLN02313 58 SHAVLKSVCSSTLYPELCFSAVAATGGKELTSQKEVIEASLNLTTKAVKHNYFAVKKLIAKRKGLTPREVTALHDCLETI 137 (587)
T ss_pred HhHHHHHhccCCCChHHHHHHHhccCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCHHHHHHHHHHHHHH
Confidence 3468999999999999999999998876667999999999999999999999999988753 46789999999999999
Q ss_pred HHHHHHHHHHHHHHhc--------CChhhHHHHHHhhhcchhhhHhhccCCC---CCCCCcchhhhhHHHHHHHHHHHHH
Q 042545 111 DLAIYEIPTAIKYLES--------GDYDSAVQYANDGIIESDTCESSFSEFP---EIPKSPLTDRNNGLTNLCTIVLDMI 179 (183)
Q Consensus 111 ~~a~~~L~~A~~~l~~--------~~~~~a~~~lsaa~~~~~tC~d~f~~~~---~~~~spl~~~~~~~~~l~siaLaiv 179 (183)
++++++|++++..+.. ..++|+++|||+|++|++||.|||.+.+ .+ +.+|.....++.+|++|+|+|+
T Consensus 138 ddavD~L~~Sl~~l~~~~~~~~~~~~~dDlqTWLSAALTnq~TClDGF~~~~~~~~v-k~~m~~~l~n~teLtSNALAIv 216 (587)
T PLN02313 138 DETLDELHVAVEDLHQYPKQKSLRKHADDLKTLISSAITNQGTCLDGFSYDDADRKV-RKALLKGQVHVEHMCSNALAMI 216 (587)
T ss_pred HHHHHHHHHHHHHHhhcccccccccchhHHHHHHHHHhcchhhHHHhhhccCccchh-HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998863 2358999999999999999999997431 23 5667778889999999999999
Q ss_pred Hhc
Q 042545 180 NLL 182 (183)
Q Consensus 180 ~~L 182 (183)
+.+
T Consensus 217 ~~~ 219 (587)
T PLN02313 217 KNM 219 (587)
T ss_pred hcc
Confidence 864
No 10
>PLN02217 probable pectinesterase/pectinesterase inhibitor
Probab=99.94 E-value=8.3e-26 Score=199.95 Aligned_cols=149 Identities=19% Similarity=0.263 Sum_probs=128.4
Q ss_pred chHHHHHHccCCCCccchHhhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHH
Q 042545 33 ENDLIEATCRKTSYPDLCIKTLRSSPGSSGADVKALAHIILESASAYCNDTYEQVKKLLNETKDKAMRNCLDVCFQVYDL 112 (183)
Q Consensus 33 ~~~~i~~~C~~t~~~~~C~~~L~~~p~s~~~d~~~L~~~ai~~a~~~~~~a~~~~~~l~~~~~~~~~~~al~~C~~~y~~ 112 (183)
..+.|+..|+.|.||++|+++|.+.+ ....+|++|++.++++++.++..+...++.+.+...+++.+.|++||.++|++
T Consensus 52 ~~~~Ikt~C~sT~YP~lC~sSLs~~~-~~~~~p~dLi~aaL~vTl~a~~~a~~~~s~L~~~~~~~r~k~AL~DClELldd 130 (670)
T PLN02217 52 SVKAIKDVCAPTDYKETCEDTLRKDA-KNTSDPLELVKTAFNATMKQISDVAKKSQTMIELQKDPRTKMALDQCKELMDY 130 (670)
T ss_pred HHHHHHHHhcCCCCcHHHHHHhhhhc-ccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHH
Confidence 34589999999999999999999887 44569999999999999999999999998886556688999999999999999
Q ss_pred HHHHHHHHHHHHhcC-------ChhhHHHHHHhhhcchhhhHhhccCCCCCCCCcchhhhhHHHHHHHHHHHHHHhc
Q 042545 113 AIYEIPTAIKYLESG-------DYDSAVQYANDGIIESDTCESSFSEFPEIPKSPLTDRNNGLTNLCTIVLDMINLL 182 (183)
Q Consensus 113 a~~~L~~A~~~l~~~-------~~~~a~~~lsaa~~~~~tC~d~f~~~~~~~~spl~~~~~~~~~l~siaLaiv~~L 182 (183)
++++|++++..+... ..+|+++|||+|++|++||.|||.+.++..+..|.....++.+|++|+|+|++.+
T Consensus 131 AvDeL~~Sl~~L~~~~~~~~~~~~dDvqTWLSAALTnQdTClDGF~~~~~~vk~~m~~~l~nvseLtSNALAmv~~l 207 (670)
T PLN02217 131 AIGELSKSFEELGKFEFHKVDEALIKLRIWLSATISHEQTCLDGFQGTQGNAGETIKKALKTAVQLTHNGLAMVSEM 207 (670)
T ss_pred HHHHHHHHHHHHhhccccccccchhHHHHHHHHHHhchhHHHHhhhhhchHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 999999999998621 2479999999999999999999985432114456677789999999999999864
No 11
>PLN02416 probable pectinesterase/pectinesterase inhibitor
Probab=99.94 E-value=1.7e-25 Score=195.22 Aligned_cols=151 Identities=14% Similarity=0.245 Sum_probs=128.5
Q ss_pred CchHHHHHHccCCCCccchHhhhccCCCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-CCChHHHHHHHHHHHH
Q 042545 32 EENDLIEATCRKTSYPDLCIKTLRSSPGSS-GADVKALAHIILESASAYCNDTYEQVKKLLNE-TKDKAMRNCLDVCFQV 109 (183)
Q Consensus 32 ~~~~~i~~~C~~t~~~~~C~~~L~~~p~s~-~~d~~~L~~~ai~~a~~~~~~a~~~~~~l~~~-~~~~~~~~al~~C~~~ 109 (183)
+..+.|++.|+.|+||++|+++|.+++... +.++.+++..+++.++..+..+...++.+... ..+++.+.+++||.|+
T Consensus 36 ~~~~~Iks~C~~T~YP~lC~~sLss~~~~~~s~~~~~ll~~sL~~A~~~~~~~s~l~s~~~~~~~~~~~~k~AL~DC~El 115 (541)
T PLN02416 36 PHLSSLTSFCKSTPYPDACFDSLKLSISINISPNILNFLLQTLQTAISEAGKLTNLLSGAGQSSNIIEKQRGTIQDCKEL 115 (541)
T ss_pred hHHHHHHHhcCCCCChHHHHHHHhhcccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCHHHHHHHHHHHHH
Confidence 456689999999999999999999887543 45788999999999999998888777766332 3467889999999999
Q ss_pred HHHHHHHHHHHHHHHhcC---ChhhHHHHHHhhhcchhhhHhhccCCCCCCCCcchhhhhHHHHHHHHHHHHHHhc
Q 042545 110 YDLAIYEIPTAIKYLESG---DYDSAVQYANDGIIESDTCESSFSEFPEIPKSPLTDRNNGLTNLCTIVLDMINLL 182 (183)
Q Consensus 110 y~~a~~~L~~A~~~l~~~---~~~~a~~~lsaa~~~~~tC~d~f~~~~~~~~spl~~~~~~~~~l~siaLaiv~~L 182 (183)
|++++++|++++..+..+ .+.|+++|||+|++|++||.|||.+.++..++++.....++.++++|+|+|++.+
T Consensus 116 ~~dAvD~L~~Sl~~L~~~~~~~~~DvqTWLSAALT~q~TC~DGF~~~~~~~~~~i~~~~~~v~qltSNALAlv~~~ 191 (541)
T PLN02416 116 HQITVSSLKRSVSRIQAGDSRKLADARAYLSAALTNKNTCLEGLDSASGPLKPKLVNSFTSTYKHVSNSLSMLPKS 191 (541)
T ss_pred HHHHHHHHHHHHHHHhhccccchhhHHHHHHHHhcchhhHHhhhhhcCcchhhHHHHHHHHHHHHHHHHHHHhccc
Confidence 999999999999998753 3578999999999999999999986543226778888899999999999999764
No 12
>PLN02506 putative pectinesterase/pectinesterase inhibitor
Probab=99.93 E-value=2.2e-25 Score=194.10 Aligned_cols=152 Identities=14% Similarity=0.197 Sum_probs=130.4
Q ss_pred CCchHHHHHHccCCCCccchHhhhccCCC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChHHHHHHHHHHHH
Q 042545 31 GEENDLIEATCRKTSYPDLCIKTLRSSPG-SSGADVKALAHIILESASAYCNDTYEQVKKLLNETKDKAMRNCLDVCFQV 109 (183)
Q Consensus 31 ~~~~~~i~~~C~~t~~~~~C~~~L~~~p~-s~~~d~~~L~~~ai~~a~~~~~~a~~~~~~l~~~~~~~~~~~al~~C~~~ 109 (183)
+.....|...|+.|+||+.|+++|.+... +...||.+|+++++++++.++..+.+.+..+.+...+++.+.+++||.++
T Consensus 31 ~~~~~~I~s~C~~T~YP~~C~ssLs~~~~~~~~~~p~~L~~aAL~vtl~~a~~a~~~v~~l~~~~~~~r~~~Al~DC~El 110 (537)
T PLN02506 31 LNFQALIAQACQFVENHSSCVSNIQAELKKSGPRTPHSVLSAALKATLDEARLAIDMITKFNALSISYREQVAIEDCKEL 110 (537)
T ss_pred hhHHHHHHHHccCCCCcHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHH
Confidence 45677999999999999999999997543 33468999999999999999999999999887666788999999999999
Q ss_pred HHHHHHHHHHHHHHHhc----CC----hhhHHHHHHhhhcchhhhHhhccCCCCCCCCcchhhhhHHHHHHHHHHHHHHh
Q 042545 110 YDLAIYEIPTAIKYLES----GD----YDSAVQYANDGIIESDTCESSFSEFPEIPKSPLTDRNNGLTNLCTIVLDMINL 181 (183)
Q Consensus 110 y~~a~~~L~~A~~~l~~----~~----~~~a~~~lsaa~~~~~tC~d~f~~~~~~~~spl~~~~~~~~~l~siaLaiv~~ 181 (183)
|++++++|++++..+.. ++ .+|+++|||+|+++++||.|||.+.++..+..+.....++.+|++|+|+|++.
T Consensus 111 lddSvd~L~~Sl~el~~~~~~~~~~~~~~Dv~TWLSAALT~q~TC~DGF~~~~~~~k~~v~~~l~nv~~LtSNALAiv~~ 190 (537)
T PLN02506 111 LDFSVSELAWSLLEMNKIRAGHDNVAYEGNLKAWLSAALSNQDTCLEGFEGTDRHLENFIKGSLKQVTQLISNVLAMYTQ 190 (537)
T ss_pred HHHHHHHHHHHHHHHhhcccccccccchhhHHhHHHHHhccHhHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999988753 12 37999999999999999999998653211445777788999999999999986
Q ss_pred c
Q 042545 182 L 182 (183)
Q Consensus 182 L 182 (183)
+
T Consensus 191 l 191 (537)
T PLN02506 191 L 191 (537)
T ss_pred c
Confidence 4
No 13
>PLN02301 pectinesterase/pectinesterase inhibitor
Probab=99.93 E-value=4.2e-25 Score=192.59 Aligned_cols=147 Identities=14% Similarity=0.226 Sum_probs=131.2
Q ss_pred chHHHHHHccCCCCccchHhhhccCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHH
Q 042545 33 ENDLIEATCRKTSYPDLCIKTLRSSPGS--SGADVKALAHIILESASAYCNDTYEQVKKLLNETKDKAMRNCLDVCFQVY 110 (183)
Q Consensus 33 ~~~~i~~~C~~t~~~~~C~~~L~~~p~s--~~~d~~~L~~~ai~~a~~~~~~a~~~~~~l~~~~~~~~~~~al~~C~~~y 110 (183)
..+.|...|+.|+||+.|+++|.+.+.. ...+|.+|++.+++.++.++..+...++.+.....+++.+.|++||.++|
T Consensus 49 ~~~~Iks~C~~T~YP~~C~ssLs~~a~~~~~~~~p~~L~~aaL~vsl~~a~~a~~~vs~l~~~~~~~~~~aAL~DC~ELl 128 (548)
T PLN02301 49 PPSLLQTLCDRAHDQDSCQAMVSEIATNTVMKLNRVDLLQVLLKESTPHLQNTIEMASEIRIRINDPRDKAALADCVELM 128 (548)
T ss_pred chHHHHHHhcCCCChHHHHHHHhhccCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHH
Confidence 4568999999999999999999987753 23489999999999999999999999999866677899999999999999
Q ss_pred HHHHHHHHHHHHHHhc---CChhhHHHHHHhhhcchhhhHhhccCCCCCCCCcchhhhhHHHHHHHHHHHHHHhc
Q 042545 111 DLAIYEIPTAIKYLES---GDYDSAVQYANDGIIESDTCESSFSEFPEIPKSPLTDRNNGLTNLCTIVLDMINLL 182 (183)
Q Consensus 111 ~~a~~~L~~A~~~l~~---~~~~~a~~~lsaa~~~~~tC~d~f~~~~~~~~spl~~~~~~~~~l~siaLaiv~~L 182 (183)
++++++|++++.++.. +++.|+++|||+|++|++||.|||.+. . +++|....+++.+|++|+|+|++.+
T Consensus 129 ~davd~L~~Sl~~l~~~~~~~~~Dv~TWLSAALT~q~TC~DGF~~~-~--~~~~~~~l~n~~qL~SNsLAiv~~l 200 (548)
T PLN02301 129 DLSKDRIKDSVEALGNVTSKSHADAHTWLSSVLTNHVTCLDGINGP-S--RQSMKPGLKDLISRARTSLAILVSV 200 (548)
T ss_pred HHHHHHHHHHHHHhhcccccchHHHHHHHHHHhcchhhHHhhhhhh-h--hhhHHHHHHHHHHHHHHHHHhhccc
Confidence 9999999999988764 357899999999999999999999864 2 6788888999999999999999875
No 14
>PLN02990 Probable pectinesterase/pectinesterase inhibitor
Probab=99.93 E-value=4.2e-25 Score=193.75 Aligned_cols=146 Identities=18% Similarity=0.309 Sum_probs=124.7
Q ss_pred hHHHHHHccCCCCccchHhhhcc-CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhh--cCCChHHHHHHHHHHHHH
Q 042545 34 NDLIEATCRKTSYPDLCIKTLRS-SPGSSGADVKALAHIILESASAYCNDTYEQVKKLLN--ETKDKAMRNCLDVCFQVY 110 (183)
Q Consensus 34 ~~~i~~~C~~t~~~~~C~~~L~~-~p~s~~~d~~~L~~~ai~~a~~~~~~a~~~~~~l~~--~~~~~~~~~al~~C~~~y 110 (183)
...|++.|+.|.||++|+++|.+ .|. ..+|.+|++.++++++.++..+.+.+..+.. ...+++.+.|++||.++|
T Consensus 53 ~~~Ik~~C~~T~YP~lC~ssLs~a~~~--~~~p~~Li~aal~vtl~~~~~a~~~~~~l~~~~~~~~~r~k~Al~DC~ELl 130 (572)
T PLN02990 53 TKAVEAVCAPTDYKETCVNSLMKASPD--STQPLDLIKLGFNVTIRSINDSIKKASGELKAKAANDPETKGALELCEKLM 130 (572)
T ss_pred hHHHHHhhcCCCCcHHHHHHhhhcccc--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHH
Confidence 45899999999999999999987 443 4689999999999999999999998877764 257899999999999999
Q ss_pred HHHHHHHHHHHHHHhcC-------ChhhHHHHHHhhhcchhhhHhhccCCCC-CCCCcchhhhhHHHHHHHHHHHHHHhc
Q 042545 111 DLAIYEIPTAIKYLESG-------DYDSAVQYANDGIIESDTCESSFSEFPE-IPKSPLTDRNNGLTNLCTIVLDMINLL 182 (183)
Q Consensus 111 ~~a~~~L~~A~~~l~~~-------~~~~a~~~lsaa~~~~~tC~d~f~~~~~-~~~spl~~~~~~~~~l~siaLaiv~~L 182 (183)
++++++|++++..+... .++|+++|||+|++|++||.|||.+.+. + +..+.....++.+|++|+|+|++.+
T Consensus 131 ddAvdeL~~Sl~~l~~~~~~~~~~~~~DvqTWLSAALTnq~TClDGF~e~~s~l-k~~~~~~l~nv~~LtSNALAiv~~~ 209 (572)
T PLN02990 131 NDATDDLKKCLDNFDGFSIDQIEDFVEDLRVWLSGSIAYQQTCMDTFEEIKSNL-SQDMLKIFKTSRELTSNGLAMITNI 209 (572)
T ss_pred HHHHHHHHHHHHHHhhcccccccchhHHHHHHHHHHhccHhhHHHhhhccchhH-HHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 99999999999998732 2589999999999999999999985422 2 3345556678899999999999864
No 15
>PLN02197 pectinesterase
Probab=99.93 E-value=7.7e-25 Score=192.09 Aligned_cols=145 Identities=14% Similarity=0.241 Sum_probs=126.4
Q ss_pred chHHHHHHccCCCCccchHhhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhh---hcCCChHHHHHHHHHHHH
Q 042545 33 ENDLIEATCRKTSYPDLCIKTLRSSPGSSGADVKALAHIILESASAYCNDTYEQVKKLL---NETKDKAMRNCLDVCFQV 109 (183)
Q Consensus 33 ~~~~i~~~C~~t~~~~~C~~~L~~~p~s~~~d~~~L~~~ai~~a~~~~~~a~~~~~~l~---~~~~~~~~~~al~~C~~~ 109 (183)
..+.|+++|+.|.||++|.++|++.+ ..+|.+|++.++++++.++..+.+.+..+. ....+++.+.|++||.++
T Consensus 37 ~~k~I~s~C~~T~YP~lC~ssLs~~~---s~~p~~L~~aaL~vtl~~~~~a~~~~s~l~~~~~~~~~~r~k~Al~DC~eL 113 (588)
T PLN02197 37 QMKAVQGICQSTSDKASCVKTLEPVK---SDDPNKLIKAFMLATKDAITKSSNFTGQTEGNMGSSISPNNKAVLDYCKRV 113 (588)
T ss_pred hHHHHHHhcCCCCChHHHHHHHhhcc---CCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCHHHHHHHHHHHHH
Confidence 44589999999999999999999977 358999999999999999999999988664 224578999999999999
Q ss_pred HHHHHHHHHHHHHHHhc------CChhhHHHHHHhhhcchhhhHhhccCCCCCCCCcchhhhhHHHHHHHHHHHHHHhc
Q 042545 110 YDLAIYEIPTAIKYLES------GDYDSAVQYANDGIIESDTCESSFSEFPEIPKSPLTDRNNGLTNLCTIVLDMINLL 182 (183)
Q Consensus 110 y~~a~~~L~~A~~~l~~------~~~~~a~~~lsaa~~~~~tC~d~f~~~~~~~~spl~~~~~~~~~l~siaLaiv~~L 182 (183)
|++++++|++++..+.. ...+|+++|||+|++|++||.|||.+. .+ +..+.....++.+|++|+|+|++.+
T Consensus 114 l~davd~L~~Sl~~l~~~~~~~~~~~~DvqTWLSAALTnq~TClDGf~~~-~~-k~~v~~~l~nv~~LtSNaLAiv~~l 190 (588)
T PLN02197 114 FMYALEDLSTIVEEMGEDLNQIGSKIDQLKQWLTGVYNYQTDCLDDIEED-DL-RKTIGEGIANSKILTSNAIDIFHSV 190 (588)
T ss_pred HHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHhChhhhhccccCc-ch-HHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 99999999999999872 235899999999999999999999864 33 5567777889999999999999864
No 16
>PLN02745 Putative pectinesterase/pectinesterase inhibitor
Probab=99.93 E-value=5.9e-25 Score=193.46 Aligned_cols=145 Identities=18% Similarity=0.288 Sum_probs=128.6
Q ss_pred hHHHHHHccCCCCccchHhhhccCCC--CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHH
Q 042545 34 NDLIEATCRKTSYPDLCIKTLRSSPG--SSGADVKALAHIILESASAYCNDTYEQVKKLLNETKDKAMRNCLDVCFQVYD 111 (183)
Q Consensus 34 ~~~i~~~C~~t~~~~~C~~~L~~~p~--s~~~d~~~L~~~ai~~a~~~~~~a~~~~~~l~~~~~~~~~~~al~~C~~~y~ 111 (183)
.+.|..+|+.|.||+.|+++|.+... +..++|.+|++++++++...+..+.+.+.++. ..+++.+.|++||.++|+
T Consensus 79 ~~~Ik~~C~~T~YP~~C~sSLs~~~~~~~~~~~p~~Ll~aAL~vtl~~~~~a~~~~~~l~--~~~~r~k~Al~DC~ELld 156 (596)
T PLN02745 79 DKIIQTVCNATLYKQTCENTLKKGTEKDPSLAQPKDLLKSAIKAVNDDLDKVLKKVLSFK--FENPDEKDAIEDCKLLVE 156 (596)
T ss_pred HHHHHHhcCCCCChHHHHHHHHhhcccccccCCHHHHHHHHHHHHHHHHHHHHHHHHhhc--cCCHHHHHHHHHHHHHHH
Confidence 47799999999999999999998643 23468999999999999999999998888774 467899999999999999
Q ss_pred HHHHHHHHHHHHHhc------CChhhHHHHHHhhhcchhhhHhhccCCCCCCCCcchhhhhHHHHHHHHHHHHHHhc
Q 042545 112 LAIYEIPTAIKYLES------GDYDSAVQYANDGIIESDTCESSFSEFPEIPKSPLTDRNNGLTNLCTIVLDMINLL 182 (183)
Q Consensus 112 ~a~~~L~~A~~~l~~------~~~~~a~~~lsaa~~~~~tC~d~f~~~~~~~~spl~~~~~~~~~l~siaLaiv~~L 182 (183)
+++++|++++..+.. ..++|+++|||+|++|++||.|||.+. ++ +++|.....++.+|++|+|+|++.+
T Consensus 157 dAid~L~~Sl~~l~~~~~~~~~~~~Dv~TWLSAALT~q~TClDGF~e~-~l-~s~m~~~l~~~~eLtSNALAiv~~l 231 (596)
T PLN02745 157 DAKEELKASISRINDEVNKLAKNVPDLNNWLSAVMSYQETCIDGFPEG-KL-KSEMEKTFKSSQELTSNSLAMVSSL 231 (596)
T ss_pred HHHHHHHHHHHHHhhcccccccchHHHHHHHHHHhccHhHHHhhhccc-ch-HHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 999999999998863 346899999999999999999999874 44 7889999999999999999999864
No 17
>PLN02713 Probable pectinesterase/pectinesterase inhibitor
Probab=99.92 E-value=7.9e-25 Score=191.86 Aligned_cols=146 Identities=14% Similarity=0.193 Sum_probs=124.0
Q ss_pred chHHHHHHccCCCCccchHhhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC---CChHHHHHHHHHHHH
Q 042545 33 ENDLIEATCRKTSYPDLCIKTLRSSPGSSGADVKALAHIILESASAYCNDTYEQVKKLLNET---KDKAMRNCLDVCFQV 109 (183)
Q Consensus 33 ~~~~i~~~C~~t~~~~~C~~~L~~~p~s~~~d~~~L~~~ai~~a~~~~~~a~~~~~~l~~~~---~~~~~~~al~~C~~~ 109 (183)
....+...|+.|+||++|+++|++. ...++.++++++++.++.++..+.+.++.+.+.. .+++.+.|++||.|+
T Consensus 31 ~~~~~~s~C~~T~YP~~C~ssLs~s---~~~d~~~l~~aaL~~tl~~a~~a~~~vs~L~~~~~~~~~~r~k~AL~DC~EL 107 (566)
T PLN02713 31 TPVSPSTICNTTPDPSFCKSVLPHN---QPGNVYDYGRFSVRKSLSQSRKFLSLVDRYLKRNSTLLSKSAIRALEDCQFL 107 (566)
T ss_pred CCCCCccccCCCCChHHHHHHhccc---cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHH
Confidence 3445789999999999999999762 2458999999999999999999999999987642 388999999999999
Q ss_pred HHHHHHHHHHHHHHHhcC-------ChhhHHHHHHhhhcchhhhHhhccCCCC--CCCCcchhhhhHHHHHHHHHHHHHH
Q 042545 110 YDLAIYEIPTAIKYLESG-------DYDSAVQYANDGIIESDTCESSFSEFPE--IPKSPLTDRNNGLTNLCTIVLDMIN 180 (183)
Q Consensus 110 y~~a~~~L~~A~~~l~~~-------~~~~a~~~lsaa~~~~~tC~d~f~~~~~--~~~spl~~~~~~~~~l~siaLaiv~ 180 (183)
|++++++|++++..+... .++|+++|||+|++|++||.|||.+.+. ..+..+.....++.+|++|+|+|++
T Consensus 108 lddavD~L~~Sl~~l~~~~~~~~~~~~~DvqTWLSAALTnq~TClDGF~~~~~~~~~k~~v~~~l~nvt~LtSNaLAlv~ 187 (566)
T PLN02713 108 AGLNIDFLLSSFETVNSSSKTLSDPQADDVQTLLSAILTNQQTCLDGLQAASSAWSVRNGLAVPLSNDTKLYSVSLALFT 187 (566)
T ss_pred HHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHhhcchhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999998632 3689999999999999999999986531 1123366667889999999999997
Q ss_pred h
Q 042545 181 L 181 (183)
Q Consensus 181 ~ 181 (183)
.
T Consensus 188 ~ 188 (566)
T PLN02713 188 K 188 (566)
T ss_pred c
Confidence 5
No 18
>PLN02698 Probable pectinesterase/pectinesterase inhibitor
Probab=99.91 E-value=1e-23 Score=182.62 Aligned_cols=147 Identities=14% Similarity=0.272 Sum_probs=128.4
Q ss_pred CCchHHHHHHccCCCCccchHhhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-C--CChHHHHHHHHHH
Q 042545 31 GEENDLIEATCRKTSYPDLCIKTLRSSPGSSGADVKALAHIILESASAYCNDTYEQVKKLLNE-T--KDKAMRNCLDVCF 107 (183)
Q Consensus 31 ~~~~~~i~~~C~~t~~~~~C~~~L~~~p~s~~~d~~~L~~~ai~~a~~~~~~a~~~~~~l~~~-~--~~~~~~~al~~C~ 107 (183)
......|+..|+.|+||+.|+++|++.+. +|.+|++.++++++.++..+.+.+.++... + ++++.+.+++||.
T Consensus 19 ~~~~~~I~~~C~~T~YP~~C~ssLs~~~~----~p~~Li~aal~vtl~~~~~a~~~~~~l~~~~~~~~~~r~~~Al~DC~ 94 (497)
T PLN02698 19 FAYQNEVQRECSFTKYPSLCVQTLRGLRH----DGVDIVSVLVNKTISETNLPLSSSMGSSYQLSLEEATYTPSVSDSCE 94 (497)
T ss_pred hhHHHHHHHhccCCCChHHHHHHHhccCC----CHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCcChHHHHHHHHHH
Confidence 45678899999999999999999998763 899999999999999999999999887653 2 3478899999999
Q ss_pred HHHHHHHHHHHHHHHHHhc---CChhhHHHHHHhhhcchhhhHhhccCC-----CCCCCCcchhhhhHHHHHHHHHHHHH
Q 042545 108 QVYDLAIYEIPTAIKYLES---GDYDSAVQYANDGIIESDTCESSFSEF-----PEIPKSPLTDRNNGLTNLCTIVLDMI 179 (183)
Q Consensus 108 ~~y~~a~~~L~~A~~~l~~---~~~~~a~~~lsaa~~~~~tC~d~f~~~-----~~~~~spl~~~~~~~~~l~siaLaiv 179 (183)
++|++++++|++++..+.. ..++|+++|||+|+++++||.|||.+. +.+ ++++.....++.+|++|+|+|+
T Consensus 95 Ell~dsvd~L~~Sl~~l~~~~~~~~~Dv~TWLSAALT~q~TClDGF~~~~~~~~~~v-~~~i~~~l~~~~~ltSNALAmv 173 (497)
T PLN02698 95 RLMKMSLKRLRQSLLALKGSSRKNKHDIQTWLSAALTFQQACKDSIVDSTGYSGTSA-ISQISQKMDHLSRLVSNSLALV 173 (497)
T ss_pred HHHHHHHHHHHHHHHHHhhccccchhHHHHHHHHhhcchhhHHHHHhhhcccccchH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998865 457899999999999999999999531 123 5678888999999999999999
Q ss_pred Hhc
Q 042545 180 NLL 182 (183)
Q Consensus 180 ~~L 182 (183)
+.+
T Consensus 174 ~~l 176 (497)
T PLN02698 174 NRI 176 (497)
T ss_pred hhh
Confidence 864
No 19
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional
Probab=99.90 E-value=3.3e-23 Score=180.94 Aligned_cols=143 Identities=16% Similarity=0.251 Sum_probs=122.7
Q ss_pred HHHccCCCCccchHhhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-----CCChHHHHHHHHHHHHHHH
Q 042545 38 EATCRKTSYPDLCIKTLRSSPGSSGADVKALAHIILESASAYCNDTYEQVKKLLNE-----TKDKAMRNCLDVCFQVYDL 112 (183)
Q Consensus 38 ~~~C~~t~~~~~C~~~L~~~p~s~~~d~~~L~~~ai~~a~~~~~~a~~~~~~l~~~-----~~~~~~~~al~~C~~~y~~ 112 (183)
...|+.|+||++|+++|++.+.+. .+|.++++.++++++.++..+...+.++... ..+++.+.|++||.+++++
T Consensus 3 ~~~C~~T~YP~lC~ssLs~~~~~~-~~p~~l~~aaL~vtl~~a~~a~~~vs~l~~~~~~~~~~~~r~~~AL~DC~ELldd 81 (538)
T PLN03043 3 SLACKSTLYPKLCRSILSTVKSSP-SDPYEYGKFSVKQCLKQARRLSKVINYYLTHENQPGKMTHEEIGALADCGELSEL 81 (538)
T ss_pred CcccCCCCCcHHHHHHHhhccCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCHHHHHHHHHHHHHHHH
Confidence 368999999999999999877543 5899999999999999999999999988632 3578889999999999999
Q ss_pred HHHHHHHHHHHHhcCC------hhhHHHHHHhhhcchhhhHhhccCCCCCCCCcchhhhhHHHHHHHHHHHHHHh
Q 042545 113 AIYEIPTAIKYLESGD------YDSAVQYANDGIIESDTCESSFSEFPEIPKSPLTDRNNGLTNLCTIVLDMINL 181 (183)
Q Consensus 113 a~~~L~~A~~~l~~~~------~~~a~~~lsaa~~~~~tC~d~f~~~~~~~~spl~~~~~~~~~l~siaLaiv~~ 181 (183)
++++|++++..+.... .+|+++|||+|++|++||.|||.+.++..+..+.....++.+|++|+|+|++.
T Consensus 82 SvD~L~~Sl~~L~~~~~~~~~~~~DvqTWLSAALTnqdTClDGF~~~~~~~k~~i~~~l~nvt~LtSNaLAlv~~ 156 (538)
T PLN03043 82 NVDYLETISSELKSAELMTDALVERVTSLLSGVVTNQQTCYDGLVDSKSSFAAALGAPLGNLTRLYSVSLGLVSH 156 (538)
T ss_pred HHHHHHHHHHHHhccccccccchhhHHHhHHHhhcChhhhhchhhccchhHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999986532 47999999999999999999998653211445677788999999999999984
No 20
>PLN02933 Probable pectinesterase/pectinesterase inhibitor
Probab=99.81 E-value=6.5e-19 Score=153.01 Aligned_cols=120 Identities=19% Similarity=0.257 Sum_probs=103.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhc---CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CChhhHHHHH
Q 042545 62 GADVKALAHIILESASAYCNDTYEQVKKLLNE---TKDKAMRNCLDVCFQVYDLAIYEIPTAIKYLES--GDYDSAVQYA 136 (183)
Q Consensus 62 ~~d~~~L~~~ai~~a~~~~~~a~~~~~~l~~~---~~~~~~~~al~~C~~~y~~a~~~L~~A~~~l~~--~~~~~a~~~l 136 (183)
+.||.+|+..++++++.++..+.+.++.+.+. ..+++.+.+++||.++|++++++|++++..+.. +.+.|+++||
T Consensus 48 ~~~~~~L~~aaL~vtl~~a~~a~~~vs~L~~~~~~~l~~r~~~Al~DC~El~~davd~L~~S~~~l~~~~~~~~Dv~TWL 127 (530)
T PLN02933 48 TKTIPELIIADLNLTILKVNLASSNFSDLQTRLGPNLTHRERCAFEDCLGLLDDTISDLTTAISKLRSSSPEFNDVSMLL 127 (530)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHH
Confidence 45899999999999999999999999988652 458899999999999999999999999998875 5679999999
Q ss_pred HhhhcchhhhHhhccCCC---------CCCCCcchhhhhHHHHHHHHHHHHHHhc
Q 042545 137 NDGIIESDTCESSFSEFP---------EIPKSPLTDRNNGLTNLCTIVLDMINLL 182 (183)
Q Consensus 137 saa~~~~~tC~d~f~~~~---------~~~~spl~~~~~~~~~l~siaLaiv~~L 182 (183)
|+|+++++||.|||.+.+ .+ +..+.....++.+|++|+|+|++.+
T Consensus 128 SAALT~q~TC~DGF~~~~~~~~~~~~~~v-k~~v~~~l~~v~~LtSNALAlv~~l 181 (530)
T PLN02933 128 SNAMTNQDTCLDGFSTSDNENNNDMTYEL-PENLKESILDISNHLSNSLAMLQNI 181 (530)
T ss_pred HHHhcchhhHhhhhhccCccccccchhhH-HHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 999999999999998542 11 3345666778999999999999864
No 21
>PLN02201 probable pectinesterase/pectinesterase inhibitor
Probab=99.79 E-value=1.8e-18 Score=150.28 Aligned_cols=117 Identities=15% Similarity=0.159 Sum_probs=99.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---------ChhhHHHH
Q 042545 65 VKALAHIILESASAYCNDTYEQVKKLLNETKDKAMRNCLDVCFQVYDLAIYEIPTAIKYLESG---------DYDSAVQY 135 (183)
Q Consensus 65 ~~~L~~~ai~~a~~~~~~a~~~~~~l~~~~~~~~~~~al~~C~~~y~~a~~~L~~A~~~l~~~---------~~~~a~~~ 135 (183)
+..+++++++++..++..+.+.++++.+...+++.+.|++||.+++++++++|++++..+... ..+|+++|
T Consensus 37 ~~~~~~~~L~~tl~~a~~a~~~vs~l~~~~~~~r~~~Al~DC~ELl~davD~L~~Sl~eL~~~~~~~~~~~~~~~DvqTW 116 (520)
T PLN02201 37 PPSEFVSSLKTTVDVIRKVVSIVSQFDKVFGDSRLSNAISDCLDLLDFAAEELSWSISASQNPNGKDNSTGDVGSDLRTW 116 (520)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccchhHHHHH
Confidence 467888999999999999999999887655678899999999999999999999999988632 15799999
Q ss_pred HHhhhcchhhhHhhccCCCCCCCCcchhhhhHHHHHHHHHHHHHHh
Q 042545 136 ANDGIIESDTCESSFSEFPEIPKSPLTDRNNGLTNLCTIVLDMINL 181 (183)
Q Consensus 136 lsaa~~~~~tC~d~f~~~~~~~~spl~~~~~~~~~l~siaLaiv~~ 181 (183)
||+|++|++||.|||.+.++..+..+.....++.++++|+|+|++.
T Consensus 117 LSAALTnq~TClDGF~~~~~~~k~~v~~~l~nvt~LtSNaLALv~~ 162 (520)
T PLN02201 117 LSAALSNQDTCIEGFDGTNGIVKKLVAGSLSQVGSTVRELLTMVHP 162 (520)
T ss_pred HHhhhcchhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999998653321344667778899999999999975
No 22
>PLN02488 probable pectinesterase/pectinesterase inhibitor
Probab=99.77 E-value=3.8e-18 Score=146.82 Aligned_cols=142 Identities=13% Similarity=0.106 Sum_probs=121.8
Q ss_pred HHccCCCCccchHhhhccCC----CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC-ChHHHHHHHHH----HHH
Q 042545 39 ATCRKTSYPDLCIKTLRSSP----GSSGADVKALAHIILESASAYCNDTYEQVKKLLNETK-DKAMRNCLDVC----FQV 109 (183)
Q Consensus 39 ~~C~~t~~~~~C~~~L~~~p----~s~~~d~~~L~~~ai~~a~~~~~~a~~~~~~l~~~~~-~~~~~~al~~C----~~~ 109 (183)
..|.++++|+.|...+.... .....++.++..++++.++.++..+...+..+.+... +++.+.+++|| .++
T Consensus 3 ~~c~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~a~~dc~~~c~el 82 (509)
T PLN02488 3 GVCKGYDDKQSCQNLLLELKTVSSSLSEMRCRDLLIIVLKNSVWRIDMAMIGVMEDTKLLEEMENDMLGVKEDTNLFEEM 82 (509)
T ss_pred eecCCCCChHHHHHHHHhhhccccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhhHHHhHHHHHHH
Confidence 47999999999999987665 2222369999999999999999999999999988766 89999999999 999
Q ss_pred HHHHHHHHHHHHHHHhc------CChhhHHHHHHhhhcchhhhHhhccCCCCCCCCcchhhhhHHHHHHHHHHHHHHhc
Q 042545 110 YDLAIYEIPTAIKYLES------GDYDSAVQYANDGIIESDTCESSFSEFPEIPKSPLTDRNNGLTNLCTIVLDMINLL 182 (183)
Q Consensus 110 y~~a~~~L~~A~~~l~~------~~~~~a~~~lsaa~~~~~tC~d~f~~~~~~~~spl~~~~~~~~~l~siaLaiv~~L 182 (183)
|++++++|.+++..+.. ...+|+++|||+|++|++||.|||.. +.. +..|.....++.++++++|+|++.+
T Consensus 83 ~~~~~~~l~~s~~~~~~~~~~~~~~~~d~~twLSa~lt~q~TC~dg~~~-~~~-~~~~~~~l~~~~~~~sn~La~~~~~ 159 (509)
T PLN02488 83 MESAKDRMIRSVEELLGGESPNLGSYENVHTWLSGVLTSYITCIDEIGE-GAY-KRRVEPELEDLISRARVALAIFISI 159 (509)
T ss_pred HHHHHHHHHHHHHHhhcccccccCcHHHHHHHHHHhHhchhhHhccccC-cch-HHHHHHHHHHHHHHHHHHHHhhccc
Confidence 99999999999999852 23689999999999999999999954 233 4557677789999999999999753
No 23
>PLN02170 probable pectinesterase/pectinesterase inhibitor
Probab=99.64 E-value=1.5e-15 Score=131.95 Aligned_cols=124 Identities=16% Similarity=0.141 Sum_probs=92.1
Q ss_pred CCccchHhhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042545 45 SYPDLCIKTLRSSPGSSGADVKALAHIILESASAYCNDTYEQVKKLLNETKDKAMRNCLDVCFQVYDLAIYEIPTAIKYL 124 (183)
Q Consensus 45 ~~~~~C~~~L~~~p~s~~~d~~~L~~~ai~~a~~~~~~a~~~~~~l~~~~~~~~~~~al~~C~~~y~~a~~~L~~A~~~l 124 (183)
+||+.|..+|++... .-|..++..+++..+..+..... .....+++||.++|++++++|++++...
T Consensus 58 ~~~~~~~~~~s~~~~---~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~Al~DC~ELlddavd~L~~S~~~~ 123 (529)
T PLN02170 58 PSSSSKQGFLSSVQE---SMNHALFARSLAFNLTLSHRTVQ-----------THTFDPVNDCLELLDDTLDMLSRIVVIK 123 (529)
T ss_pred CCcchhhhhhhhhhc---cChHHHHHhhhHhhhhhhhhhcc-----------cchhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999987643 23677777777776552221111 1125799999999999999999999654
Q ss_pred hc-CChhhHHHHHHhhhcchhhhHhhccCCCC-C-CCCcchhhhhHHHHHHHHHHHHHHhc
Q 042545 125 ES-GDYDSAVQYANDGIIESDTCESSFSEFPE-I-PKSPLTDRNNGLTNLCTIVLDMINLL 182 (183)
Q Consensus 125 ~~-~~~~~a~~~lsaa~~~~~tC~d~f~~~~~-~-~~spl~~~~~~~~~l~siaLaiv~~L 182 (183)
.. ...+|+++|||+|++|++||.|||.+.+. . ....+.....++.+|.+|+|+|++.+
T Consensus 124 ~~~~~~~DvqTWLSAALTnq~TClDGf~~~~~~~~~~~~~~~~l~nv~eLtSNALALv~~~ 184 (529)
T PLN02170 124 HADHDEEDVHTWLSAALTNQETCEQSLQEKSSSYKHGLAMDFVARNLTGLLTNSLDLFVSV 184 (529)
T ss_pred ccccchhHHHHHHHHHHhchhhHhhhhhccCccchhHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 43 34689999999999999999999986531 1 01224445678999999999999864
No 24
>PLN02916 pectinesterase family protein
Probab=99.45 E-value=6.1e-13 Score=115.20 Aligned_cols=84 Identities=12% Similarity=0.131 Sum_probs=71.3
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHhhhcchhhhHhhccCCCCCCCCcchhhhhHHHHHHHH
Q 042545 95 KDKAMRNCLDVCFQVYDLAIYEIPTAIKYLESGDYDSAVQYANDGIIESDTCESSFSEFPEIPKSPLTDRNNGLTNLCTI 174 (183)
Q Consensus 95 ~~~~~~~al~~C~~~y~~a~~~L~~A~~~l~~~~~~~a~~~lsaa~~~~~tC~d~f~~~~~~~~spl~~~~~~~~~l~si 174 (183)
.+-....|++||.++|++++++|++++..+......|+++|||+|++|++||.|||.+.+.. . .....++.++++|
T Consensus 57 ~~~~~~~Al~DC~ELl~dSvd~L~~Sl~~~~~~~~~DvqTWLSAALTnq~TClDGf~~~~~~-~---~~~v~nvt~ltSN 132 (502)
T PLN02916 57 SYYNLGEALSDCEKLYDESEARLSKLLVSHENFTVEDARTWLSGVLANHHTCLDGLEQKGQG-H---KPMAHNVTFVLSE 132 (502)
T ss_pred CcccHhHHHHHHHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHhCHhHHHHhhhhcccc-c---hHHHHHHHHHHHH
Confidence 34568899999999999999999999998877778999999999999999999999854221 2 2345689999999
Q ss_pred HHHHHHhc
Q 042545 175 VLDMINLL 182 (183)
Q Consensus 175 aLaiv~~L 182 (183)
+|+|++.+
T Consensus 133 aLAlv~~~ 140 (502)
T PLN02916 133 ALALYKKS 140 (502)
T ss_pred HHHHhhhh
Confidence 99999764
No 25
>PF07870 DUF1657: Protein of unknown function (DUF1657); InterPro: IPR012452 This domain appears to be restricted to the Bacillales.
Probab=72.59 E-value=18 Score=21.59 Aligned_cols=45 Identities=11% Similarity=0.162 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHHHHHHHH
Q 042545 74 ESASAYCNDTYEQVKKLLNETKDKAMRNCLDVCFQVYDLAIYEIP 118 (183)
Q Consensus 74 ~~a~~~~~~a~~~~~~l~~~~~~~~~~~al~~C~~~y~~a~~~L~ 118 (183)
+.++.....+.+....+.-.+.|+..+..|..|.+.....+..|+
T Consensus 3 kq~lAslK~~qA~Le~fal~T~d~~AK~~y~~~a~~l~~ii~~L~ 47 (50)
T PF07870_consen 3 KQTLASLKKAQADLETFALQTQDQEAKQMYEQAAQQLEEIIQDLE 47 (50)
T ss_pred HHHHHHHHHHHhhHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHhH
Confidence 344455555555556556567889999999999999999888775
No 26
>KOG4841 consensus Dolichol-phosphate mannosyltransferase, subunit 3 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=62.76 E-value=6.5 Score=26.34 Aligned_cols=27 Identities=15% Similarity=0.021 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 042545 101 NCLDVCFQVYDLAIYEIPTAIKYLESG 127 (183)
Q Consensus 101 ~al~~C~~~y~~a~~~L~~A~~~l~~~ 127 (183)
.-++||.+.|.+-+.++++|+++++++
T Consensus 65 ATfnDc~eA~veL~~~IkEAr~~L~rk 91 (95)
T KOG4841|consen 65 ATFNDCEEAAVELQSQIKEARADLARK 91 (95)
T ss_pred eccCCcHHHHHHHHHHHHHHHHHHHHc
Confidence 347899999999999999999998764
No 27
>PF09680 Tiny_TM_bacill: Protein of unknown function (Tiny_TM_bacill); InterPro: IPR010070 This entry represents a family of hypothetical proteins, half of which are 40 residues or less in length. Members are found only in spore-forming species. A Gly-rich variable region is followed by a strongly conserved, highly hydrophobic region, predicted to form a transmembrane helix, ending with an invariant Gly. The consensus for this stretch is FALLVVFILLIIV.
Probab=55.01 E-value=13 Score=18.61 Aligned_cols=14 Identities=7% Similarity=0.422 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHH
Q 042545 6 IASVMMFLLMTLCF 19 (183)
Q Consensus 6 ~~~~~~~~~~~~~~ 19 (183)
|+.|+.+|++++|+
T Consensus 6 FalivVLFILLiIv 19 (24)
T PF09680_consen 6 FALIVVLFILLIIV 19 (24)
T ss_pred chhHHHHHHHHHHh
Confidence 55666666666654
No 28
>TIGR01732 tiny_TM_bacill conserved hypothetical tiny transmembrane protein. This model represents a family of hypothetical proteins, half of which are 40 residues or less in length. Members are found only in spore-forming species. A Gly-rich variable region is followed by a strongly conserved, highly hydrophobic region, predicted to form a transmembrane helix, ending with an invariant Gly. The consensus for this stretch is FALLVVFILLIIV.
Probab=54.84 E-value=16 Score=18.77 Aligned_cols=17 Identities=6% Similarity=0.272 Sum_probs=10.9
Q ss_pred hHHHHHHHHHHHHHHHh
Q 042545 5 NIASVMMFLLMTLCFLS 21 (183)
Q Consensus 5 ~~~~~~~~~~~~~~~~~ 21 (183)
.|+.++.+||++.|+.+
T Consensus 7 gf~livVLFILLIIiga 23 (26)
T TIGR01732 7 GFALIVVLFILLVIVGA 23 (26)
T ss_pred chHHHHHHHHHHHHhhe
Confidence 35667777777776543
No 29
>PF02953 zf-Tim10_DDP: Tim10/DDP family zinc finger; InterPro: IPR004217 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a putative zinc binding domain with four conserved cysteine residues. Members of this family include subunits 8, 9, 10 and 13 of the mitochondrial inner membrane translocase complex, which are involved in mitochondrial protein import [, ]. Defects in TIM8 are the cause of 2 human syndromes: Mohr-Tranebjaerg syndrome (MTS) [MIM:304700]; also known as dystonia-deafness syndrome (DDS) or X-linked progressive deafness type 1 (DFN-1). It is a recessive neurodegenerative syndrome characterised by postlingual progressive sensorineural deafness as the first presenting symptom in early childhood, followed by progressive dystonia, spasticity, dysphagia, mental deterioration, paranoia and cortical blindness. Jensen syndrome [MIM:311150]; also known as opticoacoustic nerve atrophy with dementia. This X-linked disease is characterised by deafness, blindness and muscle weakness. The small alpha helical proteins Tim8 and Tim13 assemble into a hexameric complex which can bind Tim23 as its substrate and chaperone the hydrophobic Tim23 across the aqueous membrane space []. More information on zinc fingers can be found at Protein of the Month: Zinc Fingers [].; GO: 0006626 protein targeting to mitochondrion, 0045039 protein import into mitochondrial inner membrane, 0042719 mitochondrial intermembrane space protein transporter complex; PDB: 2BSK_B 3CJH_A 3DXR_A.
Probab=54.04 E-value=29 Score=21.52 Aligned_cols=28 Identities=14% Similarity=0.272 Sum_probs=22.9
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042545 95 KDKAMRNCLDVCFQVYDLAIYEIPTAIK 122 (183)
Q Consensus 95 ~~~~~~~al~~C~~~y~~a~~~L~~A~~ 122 (183)
.++.+..+++.|.+-|-++...+.+...
T Consensus 37 L~~~E~~Ci~~C~~ky~~~~~~v~~~~~ 64 (66)
T PF02953_consen 37 LSSKEESCIDNCVDKYIDTNQFVSKRFQ 64 (66)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4778899999999999999888877654
No 30
>PF08285 DPM3: Dolichol-phosphate mannosyltransferase subunit 3 (DPM3); InterPro: IPR013174 This family corresponds to subunit 3 of dolichol-phosphate mannosyltransferase, an enzyme which generates mannosyl donors for glycosylphosphatidylinositols, N-glycan and protein O- and C-mannosylation. DPM3 is an integral membrane protein and plays a role in stabilising the dolichol-phosphate mannosyl transferase complex [].
Probab=49.89 E-value=12 Score=25.39 Aligned_cols=27 Identities=19% Similarity=0.097 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 042545 101 NCLDVCFQVYDLAIYEIPTAIKYLESG 127 (183)
Q Consensus 101 ~al~~C~~~y~~a~~~L~~A~~~l~~~ 127 (183)
--++||.+.|..-..++++|...++++
T Consensus 61 ~tFnDcpeA~~eL~~eI~eAK~dLr~k 87 (91)
T PF08285_consen 61 ATFNDCPEAAKELQKEIKEAKADLRKK 87 (91)
T ss_pred hccCCCHHHHHHHHHHHHHHHHHHHHc
Confidence 347889999999999999999998764
No 31
>KOG4514 consensus Uncharacterized conserved protein [Function unknown]
Probab=49.71 E-value=85 Score=24.21 Aligned_cols=95 Identities=14% Similarity=0.139 Sum_probs=54.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhc--CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHhh
Q 042545 62 GADVKALAHIILESASAYCNDTYEQVKKLLNE--TKDKAMRNCLDVCFQVYDLAIYEIPTAIKYLESGDYDSAVQYANDG 139 (183)
Q Consensus 62 ~~d~~~L~~~ai~~a~~~~~~a~~~~~~l~~~--~~~~~~~~al~~C~~~y~~a~~~L~~A~~~l~~~~~~~a~~~lsaa 139 (183)
..||.-|.-+- ..++...+.+..|+++ +.-.....---+|.+.|.++++.|.+++++--++.|.-
T Consensus 121 ~vDp~VL~DlE-----~~~~el~~~vD~llr~lgg~lh~is~lt~~~vq~yr~aV~kl~d~~DanIK~~Y~l-------- 187 (222)
T KOG4514|consen 121 EVDPSVLSDLE-----LEAQELASSVDNLLRNLGGLLHSISSLTADNVQVYRNAVNKLTDTLDANIKCQYQL-------- 187 (222)
T ss_pred CCChHHHHHHH-----HHHHHHHHHHHHHHHHhhhHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhhHHHHHH--------
Confidence 34765543332 3334444445555442 11223445567899999999999999988655444432
Q ss_pred hcchhhhHhhccCCCCCCCCcchhhhhHHHHHHHH
Q 042545 140 IIESDTCESSFSEFPEIPKSPLTDRNNGLTNLCTI 174 (183)
Q Consensus 140 ~~~~~tC~d~f~~~~~~~~spl~~~~~~~~~l~si 174 (183)
.-.|++--+.++. ..-|....++++++..+
T Consensus 188 ---LAk~EEi~ksm~p--v~~La~qir~irRlve~ 217 (222)
T KOG4514|consen 188 ---LAKAEEITKSMKP--VEQLAQQIRQIRRLVEM 217 (222)
T ss_pred ---HHHHHHHHHHHhh--HHHHHHHHHHHHHHHHH
Confidence 2245555554432 33466667777776653
No 32
>TIGR00208 fliS flagellar biosynthetic protein FliS. The function of this protein in flagellar biosynthesis is unknown, but appears to be regulatory. The member of this family in Vibrio parahaemolyticus is designated FlaJ (creating a synonym for FliS) and was shown essential for flagellin biosynthesis.
Probab=48.71 E-value=96 Score=22.04 Aligned_cols=42 Identities=12% Similarity=0.040 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHhcCChhhHHHHHHhhhcchhhhHhh
Q 042545 108 QVYDLAIYEIPTAIKYLESGDYDSAVQYANDGIIESDTCESS 149 (183)
Q Consensus 108 ~~y~~a~~~L~~A~~~l~~~~~~~a~~~lsaa~~~~~tC~d~ 149 (183)
-+|+.++.+|+.|..++.++|+.....-++.|..-...=..+
T Consensus 26 mLydg~i~~l~~a~~ai~~~d~~~~~~~i~ka~~Ii~eL~~~ 67 (124)
T TIGR00208 26 MLYNGCLKFIRLAAQAIENDDIERKNENLIKAQNIIQELNFT 67 (124)
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhh
Confidence 455555666666666666666555555555444444333333
No 33
>KOG1733 consensus Mitochondrial import inner membrane translocase, subunit TIM13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=45.33 E-value=96 Score=21.06 Aligned_cols=59 Identities=12% Similarity=0.208 Sum_probs=37.3
Q ss_pred CHHHHHH--HHHHHHHHHHHHHHHHHHH--h----hhc--CCChHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042545 64 DVKALAH--IILESASAYCNDTYEQVKK--L----LNE--TKDKAMRNCLDVCFQVYDLAIYEIPTAIK 122 (183)
Q Consensus 64 d~~~L~~--~ai~~a~~~~~~a~~~~~~--l----~~~--~~~~~~~~al~~C~~~y~~a~~~L~~A~~ 122 (183)
++.+.+. +..++|..++.+....++. . .+. +.++..+.|+..|.+-|.++-.-+.++..
T Consensus 17 ~~~~~~m~qVkqqlAvAnAqeLv~kisekCf~KCit~PGssl~~~e~~Cis~CmdRyMdawniVSrty~ 85 (97)
T KOG1733|consen 17 TTEGELMNQVKQQLAVANAQELVSKISEKCFDKCITKPGSSLDSSEKSCISRCMDRYMDAWNIVSRTYI 85 (97)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3443433 3344555666666655532 1 111 24778999999999999999877776654
No 34
>PF02561 FliS: Flagellar protein FliS; InterPro: IPR003713 The fliD operon of several bacteria consists of three flagellar genes, fliD, fliS, and fliT, and is transcribed in this order []. In Bacillus subtilis the operon encoding the flagellar proteins FliD, FliS, and FliT is sigma D-dependent [].; GO: 0009296 flagellum assembly, 0009288 bacterial-type flagellum; PDB: 1VH6_A 3IQC_B 3K1I_B 1ORJ_B 1ORY_A.
Probab=44.74 E-value=39 Score=23.76 Aligned_cols=23 Identities=17% Similarity=0.280 Sum_probs=11.8
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHH
Q 042545 63 ADVKALAHIILESASAYCNDTYE 85 (183)
Q Consensus 63 ~d~~~L~~~ai~~a~~~~~~a~~ 85 (183)
++|.+|+.+..+-++.....+..
T Consensus 16 asp~~Li~~Lyd~ai~~l~~a~~ 38 (122)
T PF02561_consen 16 ASPHQLILMLYDGAIEFLKQAKE 38 (122)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHH
Confidence 35555555555555555555443
No 35
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=39.57 E-value=1.4e+02 Score=21.22 Aligned_cols=74 Identities=19% Similarity=0.251 Sum_probs=37.2
Q ss_pred hhccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhH
Q 042545 53 TLRSSPGSSGADVKALAHIILESASAYCNDTYEQVKKLLNETKDKAMRNCLDVCFQVYDLAIYEIPTAIKYLESGDYDSA 132 (183)
Q Consensus 53 ~L~~~p~s~~~d~~~L~~~ai~~a~~~~~~a~~~~~~l~~~~~~~~~~~al~~C~~~y~~a~~~L~~A~~~l~~~~~~~a 132 (183)
....+|+++-+....|...-+.....+-..+......+....+++..+ .+-.++-|...+..|+++.+
T Consensus 37 l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~------------~~a~l~LA~~~~~~~~~d~A 104 (145)
T PF09976_consen 37 LAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELK------------PLARLRLARILLQQGQYDEA 104 (145)
T ss_pred HHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHH------------HHHHHHHHHHHHHcCCHHHH
Confidence 444555443333444444444444455556666666666555554433 22234444445556666666
Q ss_pred HHHHHh
Q 042545 133 VQYAND 138 (183)
Q Consensus 133 ~~~lsa 138 (183)
...|..
T Consensus 105 l~~L~~ 110 (145)
T PF09976_consen 105 LATLQQ 110 (145)
T ss_pred HHHHHh
Confidence 665533
No 36
>PLN03207 stomagen; Provisional
Probab=39.46 E-value=23 Score=24.36 Aligned_cols=20 Identities=15% Similarity=0.389 Sum_probs=13.4
Q ss_pred chhHHHHHHHHHHHHHHHhc
Q 042545 3 NINIASVMMFLLMTLCFLSN 22 (183)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~ 22 (183)
+++-.+..+|||++.++|.+
T Consensus 7 ~~tt~~~~lffLl~~llla~ 26 (113)
T PLN03207 7 TATTRCLTLFFLLFFLLLGA 26 (113)
T ss_pred cccchhHHHHHHHHHHHHHH
Confidence 34445677777777777775
No 37
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=36.82 E-value=22 Score=24.27 Aligned_cols=12 Identities=17% Similarity=0.332 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHh
Q 042545 10 MMFLLMTLCFLS 21 (183)
Q Consensus 10 ~~~~~~~~~~~~ 21 (183)
+||.|+|+++|.
T Consensus 7 llL~l~LA~lLl 18 (95)
T PF07172_consen 7 LLLGLLLAALLL 18 (95)
T ss_pred HHHHHHHHHHHH
Confidence 333334334444
No 38
>COG1516 FliS Flagellin-specific chaperone FliS [Cell motility and secretion / Intracellular trafficking and secretion / Posttranslational modification, protein turnover, chaperones]
Probab=34.12 E-value=90 Score=22.71 Aligned_cols=33 Identities=15% Similarity=0.221 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHhcCChhhHHHHHHhh
Q 042545 107 FQVYDLAIYEIPTAIKYLESGDYDSAVQYANDG 139 (183)
Q Consensus 107 ~~~y~~a~~~L~~A~~~l~~~~~~~a~~~lsaa 139 (183)
.-+|+.++..|..|..++.++++......+.-|
T Consensus 25 ~MLyeg~l~~l~~A~~aie~~~i~~k~~~i~ka 57 (132)
T COG1516 25 LMLYEGALKFLKRAKEAIEQEDIEEKNESIDKA 57 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 456777777777777777777766555554444
No 39
>PRK05685 fliS flagellar protein FliS; Validated
Probab=33.73 E-value=1.8e+02 Score=20.83 Aligned_cols=32 Identities=22% Similarity=0.344 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHhcCChhhHHHHHHhh
Q 042545 108 QVYDLAIYEIPTAIKYLESGDYDSAVQYANDG 139 (183)
Q Consensus 108 ~~y~~a~~~L~~A~~~l~~~~~~~a~~~lsaa 139 (183)
-+|+.++..++.|..++..+++.....-+.-|
T Consensus 30 mLydgai~~l~~A~~ai~~~~~~~~~~~l~ka 61 (132)
T PRK05685 30 MLYEGALSFLAQAKLAIEQGDIEAKGEYLSKA 61 (132)
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34555555555555555555554444433333
No 40
>KOG3480 consensus Mitochondrial import inner membrane translocase, subunits TIM10/TIM12 [Intracellular trafficking, secretion, and vesicular transport]
Probab=33.35 E-value=1.2e+02 Score=20.36 Aligned_cols=36 Identities=19% Similarity=0.339 Sum_probs=29.1
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhh
Q 042545 96 DKAMRNCLDVCFQVYDLAIYEIPTAIKYLESGDYDS 131 (183)
Q Consensus 96 ~~~~~~al~~C~~~y~~a~~~L~~A~~~l~~~~~~~ 131 (183)
+.....|++.|...|.++-..+.+-+.....++-..
T Consensus 50 tKGE~~CiDRCVaKy~~~n~~vG~~lq~~~~~~e~~ 85 (90)
T KOG3480|consen 50 TKGESVCIDRCVAKYLDVNEKVGKKLQAMGQGDEAA 85 (90)
T ss_pred cCchhhHHHHHHHHHHHHHHHHHHHHHhcCCCcHHH
Confidence 344678999999999999999998888877765443
No 41
>PF14346 DUF4398: Domain of unknown function (DUF4398)
Probab=32.49 E-value=1.2e+02 Score=20.47 Aligned_cols=34 Identities=24% Similarity=0.294 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHhcCChhhHHHHHHhhhcc
Q 042545 109 VYDLAIYEIPTAIKYLESGDYDSAVQYANDGIIE 142 (183)
Q Consensus 109 ~y~~a~~~L~~A~~~l~~~~~~~a~~~lsaa~~~ 142 (183)
.|..+.+.|.+|...+..|+|..++....-|..+
T Consensus 41 el~~A~~~L~~A~~a~~~~~y~~A~~~A~~A~~~ 74 (103)
T PF14346_consen 41 ELKEAREKLQRAKAALDDGDYERARRLAEQAQAD 74 (103)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 7889999999999999999999888776655444
No 42
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=31.36 E-value=81 Score=18.17 Aligned_cols=26 Identities=27% Similarity=0.403 Sum_probs=20.7
Q ss_pred HHHHHHHHHhcCChhhHHHHHHhhhc
Q 042545 116 EIPTAIKYLESGDYDSAVQYANDGII 141 (183)
Q Consensus 116 ~L~~A~~~l~~~~~~~a~~~lsaa~~ 141 (183)
.|+-|...+..||++.|+.+|...+.
T Consensus 2 kLdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 2 KLDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred chHHHHHHHHcCChHHHHHHHHHHHH
Confidence 35567777888999999999988774
No 43
>PRK09591 celC cellobiose phosphotransferase system IIA component; Reviewed
Probab=28.28 E-value=1.2e+02 Score=20.93 Aligned_cols=28 Identities=29% Similarity=0.315 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHhcCChhhHHHHHHhh
Q 042545 112 LAIYEIPTAIKYLESGDYDSAVQYANDG 139 (183)
Q Consensus 112 ~a~~~L~~A~~~l~~~~~~~a~~~lsaa 139 (183)
+|....-+|+...+.|||+.++..+..|
T Consensus 19 ~Ars~~~eAl~~ak~gdf~~A~~~l~eA 46 (104)
T PRK09591 19 NARTEVHEAFAAMREGNFDLAEQKLNQS 46 (104)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3444555566666666665555544443
No 44
>cd00215 PTS_IIA_lac PTS_IIA, PTS system, lactose/cellobiose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation. This family of proteins normally function as a homotrimer, stabilized by a centrally located metal ion. Separation into subunits is thought to occur after phosphorylation.
Probab=27.77 E-value=1.3e+02 Score=20.52 Aligned_cols=28 Identities=21% Similarity=0.251 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHhcCChhhHHHHHHhh
Q 042545 112 LAIYEIPTAIKYLESGDYDSAVQYANDG 139 (183)
Q Consensus 112 ~a~~~L~~A~~~l~~~~~~~a~~~lsaa 139 (183)
+|-...-+|+...+.|+|+.++..+..|
T Consensus 14 ~Ars~~~eAl~~a~~g~fe~A~~~l~ea 41 (97)
T cd00215 14 NARSKALEALKAAKEGDFAEAEELLEEA 41 (97)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3444555666666667766555544443
No 45
>CHL00183 petJ cytochrome c553; Provisional
Probab=27.14 E-value=72 Score=21.70 Aligned_cols=35 Identities=17% Similarity=0.404 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHhc-CCCccccCCCchHHHHHHccCC
Q 042545 10 MMFLLMTLCFLSN-KPGIVGVRGEENDLIEATCRKT 44 (183)
Q Consensus 10 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~C~~t 44 (183)
.++++.++++++. ++...+....++.+.++.|..-
T Consensus 5 ~~~~~~~~~~~~~~~~~~~a~~~~G~~ly~~~Ca~C 40 (108)
T CHL00183 5 IGFLISCFALISFSQPAFAADLDNGEQIFSANCAAC 40 (108)
T ss_pred HHHHHHHHHHHhcCCccccccHHHHHHHHHHHHHHH
Confidence 3444444444442 3433332335677777777753
No 46
>PRK09634 nusB transcription antitermination protein NusB; Provisional
Probab=26.84 E-value=2.1e+02 Score=22.45 Aligned_cols=91 Identities=12% Similarity=0.171 Sum_probs=59.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhhh--------c----CCChHHHHHHHHHHHHHHHHHHHHHHHHHH--H----
Q 042545 63 ADVKALAHIILESASAYCNDTYEQVKKLLN--------E----TKDKAMRNCLDVCFQVYDLAIYEIPTAIKY--L---- 124 (183)
Q Consensus 63 ~d~~~L~~~ai~~a~~~~~~a~~~~~~l~~--------~----~~~~~~~~al~~C~~~y~~a~~~L~~A~~~--l---- 124 (183)
.+..+|...+++....++.+++.....=++ . +.-+..+.-++.|.+.-..++..+..+..- +
T Consensus 28 ~~~~~l~~~a~~~l~~~~~~~l~~~~~el~~~~~~l~~s~~~~~~~~~~r~~l~~~~~~~~~~~ng~s~~~~lp~ll~~~ 107 (207)
T PRK09634 28 LQLEELLLAAVRTLTQEVRETLDTAAAELERAQQRLLDSEGDASDLESARTMLQEALTLAETAINRLSAALELPELLQLA 107 (207)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHhC
Confidence 368889999999988888888766542221 1 112445666777777777776654444331 1
Q ss_pred h-cCChhhHHHHHHhhhcchhhhHhhccCC
Q 042545 125 E-SGDYDSAVQYANDGIIESDTCESSFSEF 153 (183)
Q Consensus 125 ~-~~~~~~a~~~lsaa~~~~~tC~d~f~~~ 153 (183)
+ ..+-..++..+.+++.+...++.-+...
T Consensus 108 ~q~~~r~~a~~Lv~gvlr~~~~LD~iI~~~ 137 (207)
T PRK09634 108 DQEEVREYALERIGAVIRNRKEIDQLLDTV 137 (207)
T ss_pred CcHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 1 1223456667888888888888888875
No 47
>PF02255 PTS_IIA: PTS system, Lactose/Cellobiose specific IIA subunit; InterPro: IPR003188 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIA PTS system enzymes. This family of proteins normally function as a homotrimer, stabilised by a centrally located metal ion []. Separation into subunits is thought to occur after phosphorylation.; GO: 0005351 sugar:hydrogen symporter activity, 0006810 transport, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016020 membrane; PDB: 3L8R_D 2E2A_B 1E2A_C 3K1S_C 2LRK_C 2LRL_A 2WY2_A 1WCR_A 2WWV_C.
Probab=26.28 E-value=1.5e+02 Score=20.15 Aligned_cols=29 Identities=21% Similarity=0.164 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHhcCChhhHHHHHHhhh
Q 042545 112 LAIYEIPTAIKYLESGDYDSAVQYANDGI 140 (183)
Q Consensus 112 ~a~~~L~~A~~~l~~~~~~~a~~~lsaa~ 140 (183)
+|....-+|+...+.|+|+.++..+..|-
T Consensus 13 ~Ars~~~eAl~~a~~~~fe~A~~~l~~a~ 41 (96)
T PF02255_consen 13 DARSLAMEALKAAREGDFEEAEELLKEAD 41 (96)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 34444555555556666655555444443
No 48
>TIGR00823 EIIA-LAC phosphotransferase system enzyme II, lactose-specific, factor III. operon. While the Lac permeases consist of two polypeptide chains (IIA and IICB), the Chb permease of E. coli consists of three (IIA, IIB and IIC). In B. subtilis, a PTS permease similar to the Chb permease of E. coli is believed to transport lichenan (a b-1,3;1,4 glucan) degradation products, oligosaccharides of 2-4 glucose units. This model is specific for the IIA subunit of the Lac PTS family.
Probab=25.12 E-value=1.5e+02 Score=20.23 Aligned_cols=27 Identities=22% Similarity=0.276 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHhh
Q 042545 113 AIYEIPTAIKYLESGDYDSAVQYANDG 139 (183)
Q Consensus 113 a~~~L~~A~~~l~~~~~~~a~~~lsaa 139 (183)
|-...-+|+...+.|||+.++..+..|
T Consensus 17 Ars~~~eAl~~a~~gdfe~A~~~l~eA 43 (99)
T TIGR00823 17 ARSKALEALKAAKAGDFAKARALVEQA 43 (99)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 444555556666667665555544443
No 49
>PF02203 TarH: Tar ligand binding domain homologue; InterPro: IPR003122 Methyl-accepting chemotaxis proteins (MCPs) are a family of bacterial receptors that mediate chemotaxis to diverse signals, responding to changes in the concentration of attractants and repellents in the environment by altering swimming behaviour []. Environmental diversity gives rise to diversity in bacterial signalling receptors, and consequently there are many genes encoding MCPs []. For example, there are four well-characterised MCPs found in Escherichia coli: Tar (taxis towards aspartate and maltose, away from nickel and cobalt), Tsr (taxis towards serine, away from leucine, indole and weak acids), Trg (taxis towards galactose and ribose) and Tap (taxis towards dipeptides). MCPs share similar topology and signalling mechanisms. MCPs either bind ligands directly or interact with ligand-binding proteins, transducing the signal to downstream signalling proteins in the cytoplasm. MCPs undergo two covalent modifications: deamidation and reversible methylation at a number of glutamate residues. Attractants increase the level of methylation, while repellents decrease it. The methyl groups are added by the methyl-transferase cheR and are removed by the methylesterase cheB. Most MCPs are homodimers that contain the following organisation: an N-terminal signal sequence that acts as a transmembrane domain in the mature protein; a poorly-conserved periplasmic receptor (ligand-binding) domain; a second transmembrane domain; and a highly-conserved C-terminal cytoplasmic domain that interacts with downstream signalling components. The C-terminal domain contains the glycosylated glutamate residues. This entry represents the ligand-binding domain found in a number of methyl-accepting chemotaxis receptors.; GO: 0004888 transmembrane signaling receptor activity, 0006935 chemotaxis, 0007165 signal transduction, 0016020 membrane; PDB: 2ASR_A 3ATP_A 2D4U_A 2LIG_A 1VLS_A 1LIH_A 1WAT_B 1VLT_B 1WAS_A 1JMW_A.
Probab=23.11 E-value=2.9e+02 Score=19.81 Aligned_cols=57 Identities=11% Similarity=0.078 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHhhhcCCCh-HHHHHHHHHHHHHHH-HHHHHHHHHHHHhcCChhhHH
Q 042545 77 SAYCNDTYEQVKKLLNETKDK-AMRNCLDVCFQVYDL-AIYEIPTAIKYLESGDYDSAV 133 (183)
Q Consensus 77 ~~~~~~a~~~~~~l~~~~~~~-~~~~al~~C~~~y~~-a~~~L~~A~~~l~~~~~~~a~ 133 (183)
......+...+..+......+ ..+...+...+.|.. ....+...+.++..||+.+..
T Consensus 88 ~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~al~~~d~~~~~ 146 (171)
T PF02203_consen 88 EQNLEQAEQAFDAFKALPHASPEERALADELEASFDAYLQQALDPLLAALRAGDIAAFM 146 (171)
T ss_dssp HHHHHHHHHHHHHHHCS---GTGGHHHHHHHHHHHHH-HHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHHHHHHHHHccCCCCcchHHHHHHHHHHHHHHHHHhHHHHHHHHHCCCHHHHH
Confidence 444444444444444432333 677889999999999 678889999999999876543
No 50
>KOG2220 consensus Predicted signal transduction protein [General function prediction only]
Probab=23.08 E-value=2.2e+02 Score=26.72 Aligned_cols=90 Identities=14% Similarity=0.042 Sum_probs=57.3
Q ss_pred CCchHHHHHHccCCCCccchHhhhc--cCCCCCCCCHHHHHHHH-HHHHHHHHHHHHHHHHHhhhcCCChHHHHHHHHHH
Q 042545 31 GEENDLIEATCRKTSYPDLCIKTLR--SSPGSSGADVKALAHII-LESASAYCNDTYEQVKKLLNETKDKAMRNCLDVCF 107 (183)
Q Consensus 31 ~~~~~~i~~~C~~t~~~~~C~~~L~--~~p~s~~~d~~~L~~~a-i~~a~~~~~~a~~~~~~l~~~~~~~~~~~al~~C~ 107 (183)
....+.+...|+.-.+-.-|+..|+ ..+..+..|........ -.....++.+-.- .+.+.++.++.........|.
T Consensus 130 ~~~~d~~k~a~~~fq~aagaf~~l~~~~~~~~~~~d~~~~~l~~~~~l~~AqAQec~f-~ks~~d~~~~~~iaKis~q~~ 208 (714)
T KOG2220|consen 130 RETVDGYKAAIAHFQAAAGAFRYLSRDALGVEPLVDLSSLTLVFLRFLMLAQAQECFF-YKSLTDNPKPSIIAKLSAQVV 208 (714)
T ss_pred cCchHHHHHHHHHHHHHHHHHHhhcHHhcCcccccccCHHHHHHHHHhhHHhhchhee-ehhhcCCcchHHHHHHHHHHH
Confidence 3677889999999999999999998 33334444533332222 2233344444332 344444444556667788899
Q ss_pred HHHHHHHHHHHHHH
Q 042545 108 QVYDLAIYEIPTAI 121 (183)
Q Consensus 108 ~~y~~a~~~L~~A~ 121 (183)
..|.+|+..+..++
T Consensus 209 ~fy~~Al~~~~~~~ 222 (714)
T KOG2220|consen 209 LFYEEALKAQIGAR 222 (714)
T ss_pred HHHHHHHHHHHHhh
Confidence 99999998887733
No 51
>PF02609 Exonuc_VII_S: Exonuclease VII small subunit; InterPro: IPR003761 Exonuclease VII is composed of two non-identical subunits; one large subunit and 4 small ones []. This enzyme catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield nucleoside 5'-phosphates.; GO: 0008855 exodeoxyribonuclease VII activity, 0006308 DNA catabolic process, 0009318 exodeoxyribonuclease VII complex; PDB: 1VP7_F.
Probab=22.59 E-value=1.8e+02 Score=17.18 Aligned_cols=42 Identities=19% Similarity=0.468 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHhcCC--hhhHHHHHHhhhcchhhhHhhcc
Q 042545 110 YDLAIYEIPTAIKYLESGD--YDSAVQYANDGIIESDTCESSFS 151 (183)
Q Consensus 110 y~~a~~~L~~A~~~l~~~~--~~~a~~~lsaa~~~~~tC~d~f~ 151 (183)
|..++.+|++.+..|.+++ .+++.....-++.-...|.+-+.
T Consensus 1 fEe~~~~Le~Iv~~Le~~~~sLdes~~lyeeg~~l~~~c~~~L~ 44 (53)
T PF02609_consen 1 FEEAMERLEEIVEKLESGELSLDESLKLYEEGMELIKKCQERLE 44 (53)
T ss_dssp HHHHHHHHHHHHHHHHTT-S-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666553 34555555555555555555444
No 52
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.25 E-value=1.1e+02 Score=25.07 Aligned_cols=21 Identities=10% Similarity=0.177 Sum_probs=18.5
Q ss_pred hhHHHHHHhhhcchhhhHhhc
Q 042545 130 DSAVQYANDGIIESDTCESSF 150 (183)
Q Consensus 130 ~~a~~~lsaa~~~~~tC~d~f 150 (183)
.+++.||.-+...+..|.+.-
T Consensus 178 ~nA~yWLGe~~y~qg~y~~Aa 198 (262)
T COG1729 178 PNAYYWLGESLYAQGDYEDAA 198 (262)
T ss_pred chhHHHHHHHHHhcccchHHH
Confidence 689999999999999998863
No 53
>PHA00442 host recBCD nuclease inhibitor
Probab=21.90 E-value=1.8e+02 Score=17.72 Aligned_cols=40 Identities=20% Similarity=0.199 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCChHHHHHHHHHH----HHHHHHHH
Q 042545 73 LESASAYCNDTYEQVKKLLNETKDKAMRNCLDVCF----QVYDLAIY 115 (183)
Q Consensus 73 i~~a~~~~~~a~~~~~~l~~~~~~~~~~~al~~C~----~~y~~a~~ 115 (183)
+..+++.-+....+|.+|.+ +.....||+.|. +.|.+|+.
T Consensus 8 VtitRd~wnd~q~yidsLek---~~~~L~~Lea~GVDNW~Gy~eA~e 51 (59)
T PHA00442 8 VTITRDAWNDMQGYIDSLEK---DNEFLKALRACGVDNWDGYMDAVE 51 (59)
T ss_pred eeecHHHHHHHHHHHHHHHH---hhHHHHHHHHcCCcchhhHHHHHH
Confidence 34456666777777777765 334667888886 45555543
No 54
>PF10510 PIG-S: Phosphatidylinositol-glycan biosynthesis class S protein; InterPro: IPR019540 Phosphatidylinositol-glycan biosynthesis class S protein (PIG-S) is one of several key, core components of the glycosylphosphatidylinositol (GPI) trans-amidase complex that mediates GPI anchoring in the endoplasmic reticulum. Anchoring occurs when a protein's C-terminal GPI attachment signal peptide is replaced with a pre-assembled GPI []. Mammalian GPI transamidase consists of at least five components: Gaa1, Gpi8, PIG-S, PIG-T, and PIG-U, all five of which are required for its function. It is possible that Gaa1, Gpi8, PIG-S, and PIG-T form a tightly associated core that is only weakly associated with PIG-U. The exact function of PIG-S is unclear [].
Probab=21.66 E-value=5.8e+02 Score=22.75 Aligned_cols=83 Identities=17% Similarity=0.153 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHhhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHhhhc
Q 042545 65 VKALAHIILESASAYCNDT---YEQVKKLLNETKDKAMRNCLDVCFQVYDLAIYEIPTAIKYLESGDYDSAVQYANDGII 141 (183)
Q Consensus 65 ~~~L~~~ai~~a~~~~~~a---~~~~~~l~~~~~~~~~~~al~~C~~~y~~a~~~L~~A~~~l~~~~~~~a~~~lsaa~~ 141 (183)
+.++=...-..+.++...+ +.-+.+|.+.-++ ...-++=.+.-..|++.++.|...+..|++..+ +..+-.
T Consensus 387 ~~eld~l~r~r~~~~l~~a~~TL~SL~~L~~~i~~---i~I~~~V~~~v~~al~~l~~a~~~l~~~~~~~a---l~~a~~ 460 (517)
T PF10510_consen 387 PWELDSLLRRRTVENLASASSTLQSLAKLLDSIPN---IVIPDEVAERVQQALEALEQAIDALNNGDLEEA---LAHARE 460 (517)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC---CcccHHHHHHHHHHHHHHHHHHHHHhCCCHHHH---HHHHHH
Confidence 3444444444444444444 4444444443221 112223334445588899999999999866554 444555
Q ss_pred chhhhHhhccCC
Q 042545 142 ESDTCESSFSEF 153 (183)
Q Consensus 142 ~~~tC~d~f~~~ 153 (183)
....|+.+|.+.
T Consensus 461 a~~~ae~AFfd~ 472 (517)
T PF10510_consen 461 AFALAERAFFDP 472 (517)
T ss_pred HHHHHHHHhCCH
Confidence 667888888873
Done!