Query 042545
Match_columns 183
No_of_seqs 102 out of 951
Neff 8.3
Searched_HMMs 29240
Date Mon Mar 25 12:20:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042545.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042545hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1xg2_B Pectinesterase inhibito 100.0 9.5E-35 3.3E-39 215.5 16.6 149 34-183 3-151 (153)
2 2cj4_A Invertase inhibitor; pr 100.0 1.6E-34 5.4E-39 214.0 15.9 147 32-182 2-149 (150)
3 1x91_A Invertase/pectin methyl 100.0 2.7E-34 9.2E-39 213.3 13.2 149 32-183 3-151 (153)
4 3iqc_A FLIS, flagellar protein 61.1 13 0.00044 25.9 4.6 26 62-87 22-47 (131)
5 1vh6_A Flagellar protein FLIS; 60.5 13 0.00044 26.4 4.6 26 62-87 19-44 (145)
6 1orj_A Flagellar protein FLIS; 50.3 59 0.002 22.4 6.6 25 62-86 15-39 (130)
7 3cjh_B Mitochondrial import in 38.5 60 0.0021 19.2 4.5 29 95-123 34-62 (64)
8 3dxr_B Mitochondrial import in 38.4 53 0.0018 21.4 4.5 31 96-126 57-87 (95)
9 2bsk_B Mitochondrial import in 35.1 84 0.0029 20.1 5.0 33 95-127 43-75 (90)
10 3dxr_A Mitochondrial import in 34.1 84 0.0029 20.0 4.9 31 96-126 51-81 (89)
11 2bsk_A Mitochondrial import in 30.8 1.1E+02 0.0036 19.6 5.6 34 95-128 41-74 (89)
12 2e2a_A Protein (enzyme IIA); h 26.1 99 0.0034 20.5 4.2 27 113-139 20-46 (105)
13 1wcr_A PTS system, N, N'-diace 25.4 1E+02 0.0036 20.3 4.2 27 113-139 18-44 (103)
14 3k1s_A PTS system, cellobiose- 25.1 1.1E+02 0.0036 20.5 4.2 27 113-139 22-48 (109)
15 3cjh_A Mitochondrial import in 24.5 62 0.0021 19.3 2.8 31 95-125 25-55 (64)
16 3l8r_A PTCA, putative PTS syst 22.8 1.2E+02 0.0041 20.6 4.2 27 113-139 37-63 (120)
17 1wgn_A UBAP1, ubiquitin associ 22.7 1E+02 0.0035 18.5 3.3 32 105-136 21-54 (63)
18 4fm3_A Uncharacterized hypothe 22.1 1.5E+02 0.0051 19.4 4.4 31 110-140 31-61 (98)
No 1
>1xg2_B Pectinesterase inhibitor; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Actinidia chinensis}
Probab=100.00 E-value=9.5e-35 Score=215.54 Aligned_cols=149 Identities=35% Similarity=0.571 Sum_probs=140.3
Q ss_pred hHHHHHHccCCCCccchHhhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHHH
Q 042545 34 NDLIEATCRKTSYPDLCIKTLRSSPGSSGADVKALAHIILESASAYCNDTYEQVKKLLNETKDKAMRNCLDVCFQVYDLA 113 (183)
Q Consensus 34 ~~~i~~~C~~t~~~~~C~~~L~~~p~s~~~d~~~L~~~ai~~a~~~~~~a~~~~~~l~~~~~~~~~~~al~~C~~~y~~a 113 (183)
.+.|+.+|++|+||++|+++|.++|++..+|+++|+.++++.++.+++.+..++.++.+...+|+.+.+|++|.++|+++
T Consensus 3 ~~~i~~~C~~T~~~~~C~~sL~~~~~~~~~~~~~l~~~ai~~~~~~a~~~~~~~~~l~~~~~~~~~~~al~dC~e~y~~a 82 (153)
T 1xg2_B 3 NHLISEICPKTRNPSLCLQALESDPRSASKDLKGLGQFSIDIAQASAKQTSKIIASLTNQATDPKLKGRYETCSENYADA 82 (153)
T ss_dssp CHHHHHHGGGSSCHHHHHHHHHTCTTGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHhcCCCChHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 56899999999999999999999999877899999999999999999999999999988767899999999999999999
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHhhhcchhhhHhhccCCCCCCCCcchhhhhHHHHHHHHHHHHHHhcC
Q 042545 114 IYEIPTAIKYLESGDYDSAVQYANDGIIESDTCESSFSEFPEIPKSPLTDRNNGLTNLCTIVLDMINLLK 183 (183)
Q Consensus 114 ~~~L~~A~~~l~~~~~~~a~~~lsaa~~~~~tC~d~f~~~~~~~~spl~~~~~~~~~l~siaLaiv~~L~ 183 (183)
+++|++|+..+..++++++++|||+|+++++||+|||.+.++. ++||..++.++.+|++|+|+|+++|.
T Consensus 83 ~~~L~~a~~~l~~~~~~d~~t~lSaAlt~~~tC~dgf~~~~~~-~~~l~~~~~~~~~l~s~aLai~~~l~ 151 (153)
T 1xg2_B 83 IDSLGQAKQFLTSGDYNSLNIYASAAFDGAGTCEDSFEGPPNI-PTQLHQADLKLEDLCDIVLVISNLLP 151 (153)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHCCSSSCC-CHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHhcccchHHHHhccCCCC-CcHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999976433 68899999999999999999999874
No 2
>2cj4_A Invertase inhibitor; protein binding, four-helix bundle, helical hairpin; 1.63A {Nicotiana tabacum} SCOP: a.29.6.1 PDB: 2cj5_A 2cj6_A 2cj7_A 2cj8_A 1rj1_A 1rj4_A* 2xqr_B*
Probab=100.00 E-value=1.6e-34 Score=214.00 Aligned_cols=147 Identities=28% Similarity=0.407 Sum_probs=137.5
Q ss_pred CchHHHHHHccCCCCccchHhhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHH
Q 042545 32 EENDLIEATCRKTSYPDLCIKTLRSSPGSSGADVKALAHIILESASAYCNDTYEQVKKLLNETKDKAMRNCLDVCFQVYD 111 (183)
Q Consensus 32 ~~~~~i~~~C~~t~~~~~C~~~L~~~p~s~~~d~~~L~~~ai~~a~~~~~~a~~~~~~l~~~~~~~~~~~al~~C~~~y~ 111 (183)
+..+.|+.+|++|+||++|+++|.++|++..+|+++|+.++++++..+++.+..++..+.+..++|+.+.++++|.++|+
T Consensus 2 a~~~~I~~~C~~T~~~~~C~~sL~~~~~s~~ad~~~la~~ai~~~~~~a~~~~~~i~~l~~~~~~~~~~~al~dC~e~y~ 81 (150)
T 2cj4_A 2 AMNNLVETTCKNTPNYQLCLKTLLSDKRSATGDITTLALIMVDAIKAKANQAAVTISKLRHSNPPAAWKGPLKNCAFSYK 81 (150)
T ss_dssp --CHHHHHHHHTSSCHHHHHHHHHTSGGGTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCGGGHHHHHHHHHHHH
T ss_pred CchHHHHHHHcCCCCccHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHH
Confidence 35679999999999999999999999998888999999999999999999999999999887778999999999999999
Q ss_pred HHH-HHHHHHHHHHhcCChhhHHHHHHhhhcchhhhHhhccCCCCCCCCcchhhhhHHHHHHHHHHHHHHhc
Q 042545 112 LAI-YEIPTAIKYLESGDYDSAVQYANDGIIESDTCESSFSEFPEIPKSPLTDRNNGLTNLCTIVLDMINLL 182 (183)
Q Consensus 112 ~a~-~~L~~A~~~l~~~~~~~a~~~lsaa~~~~~tC~d~f~~~~~~~~spl~~~~~~~~~l~siaLaiv~~L 182 (183)
+++ ++|++|+..+..++|+++++|||+|+++++||+|||.+ . ++||..++.++.+|++|+|+|+++|
T Consensus 82 ~a~~~~L~~a~~~l~~~~~~~~~t~lsaAlt~~~tC~dgf~~---~-~~pl~~~~~~~~~l~s~aLaii~~l 149 (150)
T 2cj4_A 82 VILTASLPEAIEALTKGDPKFAEDGMVGSSGDAQECEEYFKG---S-KSPFSALNIAVHELSDVGRAIVRNL 149 (150)
T ss_dssp HHHHTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHTTTT---S-CCTTHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhhCC---C-CCccHHHHHHHHHHHHHHHHHHHhh
Confidence 999 79999999999999999999999999999999999983 2 6889999999999999999999876
No 3
>1x91_A Invertase/pectin methylesterase inhibitor family protein; four-helix bundle, alpha hairpin, disulfide bridge, domain- swapping, linker; 1.50A {Arabidopsis thaliana} SCOP: a.29.6.1 PDB: 1x8z_A 1x90_A
Probab=100.00 E-value=2.7e-34 Score=213.33 Aligned_cols=149 Identities=24% Similarity=0.414 Sum_probs=137.0
Q ss_pred CchHHHHHHccCCCCccchHhhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHH
Q 042545 32 EENDLIEATCRKTSYPDLCIKTLRSSPGSSGADVKALAHIILESASAYCNDTYEQVKKLLNETKDKAMRNCLDVCFQVYD 111 (183)
Q Consensus 32 ~~~~~i~~~C~~t~~~~~C~~~L~~~p~s~~~d~~~L~~~ai~~a~~~~~~a~~~~~~l~~~~~~~~~~~al~~C~~~y~ 111 (183)
++.+.|+.+|++|+||++|+++| +|++..+|+++|+.++++.++.+++.+..++..+.+...+|+.+.+|++|.++|+
T Consensus 3 a~~~~i~~~C~~T~~~~~C~~sL--~p~~~~~~~~~l~~~a~~~~~~~a~~~~~~~~~l~~~~~~~~~~~al~dC~e~y~ 80 (153)
T 1x91_A 3 MDSSEMSTICDKTLNPSFCLKFL--NTKFASANLQALAKTTLDSTQARATQTLKKLQSIIDGGVDPRSKLAYRSCVDEYE 80 (153)
T ss_dssp --CCSTTTGGGGSSCHHHHHHHH--HHTTCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHhCCCCChhHHHHHh--CcCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 34567999999999999999999 6776678999999999999999999999999999887678999999999999999
Q ss_pred HHHHHHHHHHHHHhcCChhhHHHHHHhhhcchhhhHhhccCCCCCCCCcchhhhhHHHHHHHHHHHHHHhcC
Q 042545 112 LAIYEIPTAIKYLESGDYDSAVQYANDGIIESDTCESSFSEFPEIPKSPLTDRNNGLTNLCTIVLDMINLLK 183 (183)
Q Consensus 112 ~a~~~L~~A~~~l~~~~~~~a~~~lsaa~~~~~tC~d~f~~~~~~~~spl~~~~~~~~~l~siaLaiv~~L~ 183 (183)
+++++|++|+..+..++++++++|||+|+++++||+|||.+.+++ ++||..++.++.+|++|+|+|+++|.
T Consensus 81 ~a~~~L~~a~~~l~~~~~~d~~t~lSaAlt~~~tC~dgf~~~~~~-~~~l~~~~~~~~~l~s~aLai~~~l~ 151 (153)
T 1x91_A 81 SAIGNLEEAFEHLASGDGMGMNMKVSAALDGADTCLDDVKRLRSV-DSSVVNNSKTIKNLCGIALVISNMLP 151 (153)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHTTCSSC-CHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHccHhHHHHHhccCCCC-cCHHHHHhHHHHHHHHHHHHHHHHcc
Confidence 999999999999999999999999999999999999999976434 78899999999999999999999874
No 4
>3iqc_A FLIS, flagellar protein; chaperone, flagellum; 2.70A {Helicobacter pylori} SCOP: a.24.19.0 PDB: 3k1i_A
Probab=61.06 E-value=13 Score=25.86 Aligned_cols=26 Identities=8% Similarity=0.138 Sum_probs=16.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHH
Q 042545 62 GADVKALAHIILESASAYCNDTYEQV 87 (183)
Q Consensus 62 ~~d~~~L~~~ai~~a~~~~~~a~~~~ 87 (183)
+++|.+|+.+-.+-++.....+...+
T Consensus 22 tasP~~Li~mLydgal~~l~~A~~ai 47 (131)
T 3iqc_A 22 VESPAKLIEMLYEGILRFSSQAKRCI 47 (131)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677777777777666666665544
No 5
>1vh6_A Flagellar protein FLIS; structural genomics, unknown function; HET: MSE; 2.50A {Bacillus subtilis} SCOP: a.24.19.1
Probab=60.50 E-value=13 Score=26.35 Aligned_cols=26 Identities=8% Similarity=0.118 Sum_probs=15.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHH
Q 042545 62 GADVKALAHIILESASAYCNDTYEQV 87 (183)
Q Consensus 62 ~~d~~~L~~~ai~~a~~~~~~a~~~~ 87 (183)
+++|.+|+.+-.+-++.....+...+
T Consensus 19 tAsP~~Li~mLydgal~~l~~A~~ai 44 (145)
T 1vh6_A 19 TATPGELTLMLYNGCLKFIRLAAQAI 44 (145)
T ss_dssp -CCTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667777776666666666655443
No 6
>1orj_A Flagellar protein FLIS; flagellin, flagellar export, chaperone, flagellum, four HELI; 2.25A {Aquifex aeolicus} SCOP: a.24.19.1 PDB: 1ory_A
Probab=50.27 E-value=59 Score=22.38 Aligned_cols=25 Identities=12% Similarity=0.029 Sum_probs=16.7
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHH
Q 042545 62 GADVKALAHIILESASAYCNDTYEQ 86 (183)
Q Consensus 62 ~~d~~~L~~~ai~~a~~~~~~a~~~ 86 (183)
+++|.+|+.+-.+-++.....+...
T Consensus 15 tAsP~~Li~mLydgai~~l~~A~~a 39 (130)
T 1orj_A 15 TATPLEQIILLYDKAIECLERAIEI 39 (130)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577777777777776666665543
No 7
>3cjh_B Mitochondrial import inner membrane translocase S TIM8; cyclic heterohexamer, chaperone, M binding, mitochondrion, protein transport; 2.60A {Saccharomyces cerevisiae}
Probab=38.52 E-value=60 Score=19.24 Aligned_cols=29 Identities=14% Similarity=0.257 Sum_probs=24.3
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042545 95 KDKAMRNCLDVCFQVYDLAIYEIPTAIKY 123 (183)
Q Consensus 95 ~~~~~~~al~~C~~~y~~a~~~L~~A~~~ 123 (183)
.+..+..+++.|.+-|-++-..+.+.+..
T Consensus 34 L~~~E~~Ci~~Cv~ky~~~~~~v~~~~~~ 62 (64)
T 3cjh_B 34 LSSQEEQCLSNCVNRFLDTNIRIVNGLQN 62 (64)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CChhHhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 37788999999999999998888776653
No 8
>3dxr_B Mitochondrial import inner membrane translocase subunit TIM10; alpha-propeller, helix-turn-helix, intramolecular disulfides., chaperone; 2.50A {Saccharomyces cerevisiae}
Probab=38.38 E-value=53 Score=21.41 Aligned_cols=31 Identities=19% Similarity=0.386 Sum_probs=25.7
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 042545 96 DKAMRNCLDVCFQVYDLAIYEIPTAIKYLES 126 (183)
Q Consensus 96 ~~~~~~al~~C~~~y~~a~~~L~~A~~~l~~ 126 (183)
+..+..|++.|.+-|-++-..+.+.+..+..
T Consensus 57 ~~~E~~Ci~~Cv~Ky~d~~~~V~~~~q~~~q 87 (95)
T 3dxr_B 57 NKNESSCLDRCVAKYFETNVQVGENMQKMGQ 87 (95)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6678999999999999999998888776543
No 9
>2bsk_B Mitochondrial import inner membrane translocase subunit TIM10; protein transport, mitochondrial protein import, TIM complex; 3.3A {Homo sapiens} SCOP: g.83.1.1
Probab=35.11 E-value=84 Score=20.05 Aligned_cols=33 Identities=21% Similarity=0.235 Sum_probs=28.0
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 042545 95 KDKAMRNCLDVCFQVYDLAIYEIPTAIKYLESG 127 (183)
Q Consensus 95 ~~~~~~~al~~C~~~y~~a~~~L~~A~~~l~~~ 127 (183)
.+..+..|++.|.+-|-++-..+.+.+......
T Consensus 43 L~~~E~~Ci~~Cv~Ky~d~~~~V~~~~~~~~~~ 75 (90)
T 2bsk_B 43 LSKGESVCLDRCVSKYLDIHERMGKKLTELSMQ 75 (90)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CChhHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 477889999999999999999988888766543
No 10
>3dxr_A Mitochondrial import inner membrane translocase subunit TIM9; alpha-propeller, helix-turn-helix, intramolecular disulfides., chaperone; 2.50A {Saccharomyces cerevisiae}
Probab=34.10 E-value=84 Score=20.02 Aligned_cols=31 Identities=6% Similarity=0.151 Sum_probs=26.9
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 042545 96 DKAMRNCLDVCFQVYDLAIYEIPTAIKYLES 126 (183)
Q Consensus 96 ~~~~~~al~~C~~~y~~a~~~L~~A~~~l~~ 126 (183)
+.....|++.|.+-|-++-..+...+..+..
T Consensus 51 ~~~E~~Ci~~Cv~Ky~~~~~~v~~~~~~~~~ 81 (89)
T 3dxr_A 51 TNKEQTCIMKCSEKFLKHSERVGQRFQEQNA 81 (89)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred CchHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6778999999999999999999888876654
No 11
>2bsk_A Mitochondrial import inner membrane translocase subunit TIM9 A; protein transport, mitochondrial protein import, TIM complex; 3.3A {Homo sapiens} SCOP: g.83.1.1
Probab=30.82 E-value=1.1e+02 Score=19.57 Aligned_cols=34 Identities=15% Similarity=0.215 Sum_probs=29.1
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 042545 95 KDKAMRNCLDVCFQVYDLAIYEIPTAIKYLESGD 128 (183)
Q Consensus 95 ~~~~~~~al~~C~~~y~~a~~~L~~A~~~l~~~~ 128 (183)
.+..+..|++.|.+-|-++-..+.+.+..+....
T Consensus 41 L~~~E~~Ci~~Cv~Ky~d~~~~V~~~~~~~~~~~ 74 (89)
T 2bsk_A 41 VKPEETTCSEHCLQKYLKMTQRISMRFQEYHIQQ 74 (89)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSS
T ss_pred CCchHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4778899999999999999999998888776543
No 12
>2e2a_A Protein (enzyme IIA); helical bundles, PTS, transferase, phosphotransferase system; 2.10A {Lactococcus lactis} SCOP: a.7.2.1 PDB: 1e2a_A
Probab=26.06 E-value=99 Score=20.47 Aligned_cols=27 Identities=26% Similarity=0.325 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHhh
Q 042545 113 AIYEIPTAIKYLESGDYDSAVQYANDG 139 (183)
Q Consensus 113 a~~~L~~A~~~l~~~~~~~a~~~lsaa 139 (183)
|-...-+|+...+.|+|+.++..+..|
T Consensus 20 ArS~~~eAl~~Ak~g~fe~A~~~l~eA 46 (105)
T 2e2a_A 20 ARSKLLEALKAAENGDFAKADSLVVEA 46 (105)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 344444555555666666555544444
No 13
>1wcr_A PTS system, N, N'-diacetylchitobiose-specific IIA component; mutagenesis, transferase, sugar transport, phosphotransferase; NMR {Escherichia coli} PDB: 2wy2_A 2wwv_A
Probab=25.37 E-value=1e+02 Score=20.28 Aligned_cols=27 Identities=22% Similarity=0.239 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHhh
Q 042545 113 AIYEIPTAIKYLESGDYDSAVQYANDG 139 (183)
Q Consensus 113 a~~~L~~A~~~l~~~~~~~a~~~lsaa 139 (183)
|-...-+|+...+.|+|+.++..+..|
T Consensus 18 Ars~~~eAl~~Ak~g~fe~A~~~l~eA 44 (103)
T 1wcr_A 18 ARSLAYAALKQAKQGDFAAAKAMMDQS 44 (103)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 444555566666667776666555444
No 14
>3k1s_A PTS system, cellobiose-specific IIA component; all alpha protein, spectrin repeat-like, transferase, structural genomics; HET: MSE; 2.30A {Bacillus anthracis} SCOP: a.7.2.0
Probab=25.09 E-value=1.1e+02 Score=20.51 Aligned_cols=27 Identities=15% Similarity=0.086 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHhh
Q 042545 113 AIYEIPTAIKYLESGDYDSAVQYANDG 139 (183)
Q Consensus 113 a~~~L~~A~~~l~~~~~~~a~~~lsaa 139 (183)
|-...-+|+...+.|+|+.++..+..|
T Consensus 22 Ars~~~eAl~~Ak~gdfe~A~~~l~eA 48 (109)
T 3k1s_A 22 ARSFAMEALQFAKQGKMAEADEAMVKA 48 (109)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 444455555555666666555544444
No 15
>3cjh_A Mitochondrial import inner membrane translocase S TIM13; cyclic heterohexamer, chaperone, M binding, mitochondrion, protein transport; 2.60A {Saccharomyces cerevisiae}
Probab=24.51 E-value=62 Score=19.28 Aligned_cols=31 Identities=19% Similarity=0.209 Sum_probs=25.5
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 042545 95 KDKAMRNCLDVCFQVYDLAIYEIPTAIKYLE 125 (183)
Q Consensus 95 ~~~~~~~al~~C~~~y~~a~~~L~~A~~~l~ 125 (183)
.+..+..+++.|.+-|-++-..+.+......
T Consensus 25 L~~~E~~Ci~~Cv~Ky~~~~~~v~~~~~~~~ 55 (64)
T 3cjh_A 25 YATRNDACIDQCLAKYMRSWNVISKAYISRI 55 (64)
T ss_dssp CCSCCHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556789999999999999999888876543
No 16
>3l8r_A PTCA, putative PTS system, cellobiose-specific IIA component; helix; 2.50A {Streptococcus mutans} SCOP: a.7.2.0
Probab=22.85 E-value=1.2e+02 Score=20.63 Aligned_cols=27 Identities=19% Similarity=0.116 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHhh
Q 042545 113 AIYEIPTAIKYLESGDYDSAVQYANDG 139 (183)
Q Consensus 113 a~~~L~~A~~~l~~~~~~~a~~~lsaa 139 (183)
|-...-+|+...+.|+|+.++..+..|
T Consensus 37 ARS~~~eAl~~Ak~gdfe~A~~~l~eA 63 (120)
T 3l8r_A 37 ARSIVHEAFDAMREKNYILAEQKLQEA 63 (120)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 333444455555556665555544444
No 17
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=22.75 E-value=1e+02 Score=18.50 Aligned_cols=32 Identities=9% Similarity=0.267 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhc--CChhhHHHHH
Q 042545 105 VCFQVYDLAIYEIPTAIKYLES--GDYDSAVQYA 136 (183)
Q Consensus 105 ~C~~~y~~a~~~L~~A~~~l~~--~~~~~a~~~l 136 (183)
+|.+.....-+.-+.|+.+|+. ++.+.+-.|+
T Consensus 21 e~V~~LvsMGFs~~qA~kALKat~~NvErAaDWL 54 (63)
T 1wgn_A 21 QCVETVVNMGYSYECVLRAMKKKGENIEQILDYL 54 (63)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHCSCHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 4444444443344445555543 5677777776
No 18
>4fm3_A Uncharacterized hypothetical protein; PF14346 family protein, DUF4398, structural genomics, joint for structural genomics, JCSG; HET: PG4; 2.47A {Pseudomonas aeruginosa}
Probab=22.13 E-value=1.5e+02 Score=19.43 Aligned_cols=31 Identities=19% Similarity=0.137 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHhcCChhhHHHHHHhhh
Q 042545 110 YDLAIYEIPTAIKYLESGDYDSAVQYANDGI 140 (183)
Q Consensus 110 y~~a~~~L~~A~~~l~~~~~~~a~~~lsaa~ 140 (183)
+..+.+.|..|..++..++|..++....-+.
T Consensus 31 l~~A~dKl~~A~~Am~~~~y~~Ar~lAEqAe 61 (98)
T 4fm3_A 31 LKLAQDKYAAAQIAMTAESYKKARLLAEQAE 61 (98)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 6788999999999999999999888765543
Done!