BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042546
(671 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|224127560|ref|XP_002329308.1| predicted protein [Populus trichocarpa]
gi|222870762|gb|EEF07893.1| predicted protein [Populus trichocarpa]
Length = 658
Score = 779 bits (2012), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 397/674 (58%), Positives = 495/674 (73%), Gaps = 20/674 (2%)
Query: 1 MRHQWRFLLFRNYPRSSLQFTGSSYYFQVPFNPNLTLHESLHTLSSLLPTSSHTFYSRFS 60
MRH WR LL+R+YPRSSL+F S +FQV L H S + S FS
Sbjct: 1 MRHSWRILLYRSYPRSSLKF---SNHFQV-----LQQHSPPPLRSLSSLHTLSLQDSHFS 52
Query: 61 RLPICYSRLINLIDPKNPNFRNPMICSYSSEPAMEQKESD---FTVVSDIFYKFSDVNDI 117
+ P ++ I KNP F + SSE ++ + D +V D+F KF D +DI
Sbjct: 53 KTPQKHN-----IYNKNPLFARNL----SSEASLVEPTKDPDLVLLVCDVFTKFDDSDDI 103
Query: 118 SKQLELSGVVFTHEMVLKVLKNLESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVGVH 177
+K+LELS VV +H++VLKVLK+L S P A+RFF+WVL+K+SERLSSK+YN ML I+GV+
Sbjct: 104 NKELELSSVVISHDLVLKVLKSLGSKPGVAKRFFDWVLKKDSERLSSKSYNWMLGILGVN 163
Query: 178 GLVQEFWGLVDVMKKKGYGVASHVRNKMTEKFEKEGLESDLEKLKGIFATGSIDNSIEKV 237
GLV EFW LVD MK KGYGV+ R+++ EKFE EGL+ D+EKLKG+FATGSIDNS+EK+
Sbjct: 164 GLVAEFWELVDKMKTKGYGVSGVTRDRVLEKFENEGLKGDIEKLKGVFATGSIDNSVEKI 223
Query: 238 ASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFV 297
R+ ++VRS WG+DVE +++ L+ FS+ LVK V++ L EP KALIFFRW EES
Sbjct: 224 GLRMSRIVRSKFWGEDVEGEIKGLSAEFSSGLVKIVLEHLAIEPMKALIFFRWVEESELC 283
Query: 298 KHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVD 357
KHD SYNAMA VLG +DCIDRFWKV+DEMRS G+EME+ET VL F R M+KEAVD
Sbjct: 284 KHDGGSYNAMARVLGSKDCIDRFWKVIDEMRSNGFEMEVETFDTVLAWFMRRKMIKEAVD 343
Query: 358 LYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKA 417
LYEFAM NKPS CT+LLR IVV KQLD+ LFS++V+VF ENGNVLTD+ML++VLKA
Sbjct: 344 LYEFAMNGANKPSSKYCTYLLRNIVVCKQLDIGLFSRIVKVFTENGNVLTDSMLDAVLKA 403
Query: 418 LISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVG 477
L SVGR ECNKIL+ M GF+AS N++ KIAF L+SAGK EA EF+DHME+SGSD+
Sbjct: 404 LRSVGRFKECNKILREMMVAGFVASGNLQRKIAFGLTSAGKNYEAIEFVDHMESSGSDLD 463
Query: 478 DKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFV 537
+K W SLI+GHCV+GDL+KA+DCF+KMVEK+G + AGYA++LLVN YC KNRA DAC +
Sbjct: 464 NKAWASLIEGHCVSGDLEKASDCFKKMVEKKGVTGAGYAVELLVNAYCLKNRAGDACNLL 523
Query: 538 HNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPFIKYVSKSGT 597
+ V + L PW TTY+ LI LL Q GFKDAL+LL LM+ HG PP++DPF ++VSKSGT
Sbjct: 524 CDYVCQNQLHPWRTTYKVLISKLLAQGGFKDALNLLGLMQSHGIPPYIDPFFEFVSKSGT 583
Query: 598 SDDAIAFLKGMTSKRFPSMSVVLCLFAAFFQARRHSEAQDLLSKCPRYVRNHADVLNLLY 657
DDAIAF+ MT+K+FPS+SV L LF AFF A+RHSEAQD LSKCP ++RNHADVL L
Sbjct: 584 GDDAIAFMNAMTTKKFPSISVSLRLFEAFFNAKRHSEAQDFLSKCPVFIRNHADVLTLFC 643
Query: 658 SKKSGGDSAPAVTA 671
S KS D+A A +
Sbjct: 644 SMKSSKDTAAATVS 657
>gi|225451887|ref|XP_002278999.1| PREDICTED: pentatricopeptide repeat-containing protein At3g02490,
mitochondrial-like [Vitis vinifera]
Length = 650
Score = 778 bits (2008), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 391/669 (58%), Positives = 488/669 (72%), Gaps = 20/669 (2%)
Query: 1 MRHQWRFLLFRNYPRSSLQFTGSSYYFQVPFNPNLTLHESLHTLSSLLPTSSHTFYSRFS 60
MR+QWR LL R + RS L + +F V + + ++L SS L SH
Sbjct: 1 MRNQWRLLLLRTHSRSPLSISHIFSHFPVKSDHS---SQTLRFFSSFLQGHSHH------ 51
Query: 61 RLPICYSRLINLIDPKN-PNFRNPMICSYSSEPAMEQKESDFTVVSDIFYKFSDVNDISK 119
C +ID NF P S+SS+ A+E K D V +DIF K ++I
Sbjct: 52 ----C------VIDSTELRNFSGPRSRSFSSDLALEDKGLDHVVFTDIFSKPKGFDEIKN 101
Query: 120 QLELSGVVFTHEMVLKVLKNLESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGL 179
++E S +V +HE+VLKVL+NLES+P+ AR F+WVL ESERLSSK+YNLML I+G +G
Sbjct: 102 EVESSDIVVSHELVLKVLENLESNPEVARSVFDWVLRAESERLSSKSYNLMLGILGSNGF 161
Query: 180 VQEFWGLVDVMKKKGYGVASHVRNKMTEKFEKEGLESDLEKLKGIFATGSIDNSIEKVAS 239
V EFW LV+VMKKKGYGV+ K E FEKE L SDLEKL+G+FA+GS+D+SI+K+ S
Sbjct: 162 VSEFWDLVEVMKKKGYGVSKAAYVKALENFEKEALGSDLEKLRGLFASGSVDDSIQKICS 221
Query: 240 RICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKH 299
R+ K++RS++WGD+VE QL +L VTFS DLV V++ LG EP KALIFFRW EES VKH
Sbjct: 222 RVSKIIRSEVWGDNVEGQLHNLKVTFSGDLVAMVLENLGLEPMKALIFFRWVEESDLVKH 281
Query: 300 DESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLY 359
D+ +YNAM VLGREDCI+RFWKV DEMR+ GYEME+ T KV+GRF +R M+KE VDLY
Sbjct: 282 DKQTYNAMLRVLGREDCIERFWKVADEMRNAGYEMEVATYFKVVGRFYKRKMIKEVVDLY 341
Query: 360 EFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALI 419
EFAM+ NKPS+ CTFLLRKIVVSK LD+ LFS+VVR + E GN+LT +ML+++LK+L
Sbjct: 342 EFAMSGANKPSMYDCTFLLRKIVVSKVLDISLFSRVVRTYTEGGNILTKSMLDAILKSLT 401
Query: 420 SVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDK 479
SVGR GECNK+LKAMEEGG++ S M++KIAF LSSA K DEANEFM++ME S +
Sbjct: 402 SVGRFGECNKLLKAMEEGGYVVGSGMQNKIAFGLSSARKTDEANEFMNNMEDSDCRPNYR 461
Query: 480 MWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHN 539
W SLI+G+CVAGDLDKA+DCFQKMVEKEG S+AGYA ++LVN YC K R++DAC + +
Sbjct: 462 TWSSLIEGYCVAGDLDKASDCFQKMVEKEGVSYAGYAFEVLVNAYCCKGRSVDACGLLCD 521
Query: 540 CVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPFIKYVSKSGTSD 599
+ KPWH+TY+ LI LLVQ GF+ AL+LL LMKDH FPPF+DPFI+YVS++GT D
Sbjct: 522 LASKEKFKPWHSTYKLLISKLLVQGGFQAALNLLGLMKDHEFPPFLDPFIEYVSRTGTGD 581
Query: 600 DAIAFLKGMTSKRFPSMSVVLCLFAAFFQARRHSEAQDLLSKCPRYVRNHADVLNLLYSK 659
DAI FL+ MT KRFPS SV L F AFF+A RH+EAQD LSKCP Y+RNHADVLNL Y+
Sbjct: 582 DAITFLRAMTVKRFPSTSVFLQTFEAFFKAGRHNEAQDFLSKCPGYIRNHADVLNLFYTM 641
Query: 660 KSGGDSAPA 668
KSG + A
Sbjct: 642 KSGEAAMAA 650
>gi|147775369|emb|CAN63553.1| hypothetical protein VITISV_003195 [Vitis vinifera]
Length = 650
Score = 772 bits (1993), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 389/669 (58%), Positives = 484/669 (72%), Gaps = 20/669 (2%)
Query: 1 MRHQWRFLLFRNYPRSSLQFTGSSYYFQVPFNPNLTLHESLHTLSSLLPTSSHTFYSRFS 60
MR+QWR LL R + RS L + +F V + + ++L SS L SH
Sbjct: 1 MRNQWRLLLLRTHSRSPLSISHIFSHFPVKSDHS---SQTLRFFSSFLQGHSHH------ 51
Query: 61 RLPICYSRLINLIDPKN-PNFRNPMICSYSSEPAMEQKESDFTVVSDIFYKFSDVNDISK 119
C +ID NF P S+SS+ A+E K D V +DIF K ++I
Sbjct: 52 ----C------VIDSTELRNFSGPRSRSFSSDLALEDKGLDHVVFTDIFSKPKGFDEIKN 101
Query: 120 QLELSGVVFTHEMVLKVLKNLESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGL 179
++E S +V +HE+VLKVL+NLES+P+ AR F+WVL ESERLSSK+YNLML I+G +G
Sbjct: 102 EVESSDIVVSHELVLKVLENLESNPEVARXVFDWVLRAESERLSSKSYNLMLGILGSNGF 161
Query: 180 VQEFWGLVDVMKKKGYGVASHVRNKMTEKFEKEGLESDLEKLKGIFATGSIDNSIEKVAS 239
V EFW LV+VMKKKGYGV+ K E FEKE L SDLEKL+G+FA+GS+DNSI+K+ S
Sbjct: 162 VSEFWDLVEVMKKKGYGVSKAAYVKALENFEKEALGSDLEKLRGLFASGSVDNSIQKICS 221
Query: 240 RICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKH 299
R+ K++RS++WGD+VE QL +L VTFS DLV V++ LG EP KALIFFRW EES KH
Sbjct: 222 RVSKIIRSEVWGDNVEGQLHNLKVTFSGDLVAMVLENLGLEPMKALIFFRWVEESDLXKH 281
Query: 300 DESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLY 359
D+ +YNAM VLGREDCI+RFWKV DEMR+ GYEME+ T KV+GRF +R M+ E VDLY
Sbjct: 282 DKXTYNAMLRVLGREDCIERFWKVADEMRNAGYEMEVATYXKVVGRFYKRKMIXEVVDLY 341
Query: 360 EFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALI 419
EFAM+ NKPS+ CTFLLRKIVVSK LD+ LFS+VVR + E GN+LT +ML++ LK+L
Sbjct: 342 EFAMSGANKPSMYDCTFLLRKIVVSKVLDISLFSRVVRTYTEGGNILTKSMLDAXLKSLT 401
Query: 420 SVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDK 479
SVGR GECNK+LKAMEEGG++ S M++KIAF LSSA K DEANEFM++ME S +
Sbjct: 402 SVGRFGECNKLLKAMEEGGYVVGSGMQNKIAFGLSSARKTDEANEFMNNMEDSDCRPNYR 461
Query: 480 MWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHN 539
W SLI+G+CVAGDLDKA+DCFQKMVEKEG S+ GYA ++LVN YC K R++DAC + +
Sbjct: 462 TWSSLIEGYCVAGDLDKASDCFQKMVEKEGVSYXGYAFEVLVNAYCCKGRSVDACGLLCD 521
Query: 540 CVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPFIKYVSKSGTSD 599
+ KPWH+TY+ LI LLVQ GF+ AL+LL LMKDH FPPF+DPFI+YVS++GT D
Sbjct: 522 LASKEKFKPWHSTYKLLISKLLVQGGFQAALNLLGLMKDHEFPPFLDPFIEYVSRTGTGD 581
Query: 600 DAIAFLKGMTSKRFPSMSVVLCLFAAFFQARRHSEAQDLLSKCPRYVRNHADVLNLLYSK 659
DAI FL+ MT KRFPS SV L F AFF+A RH+EAQD LSKCP Y+RNHADVLNL Y+
Sbjct: 582 DAITFLRAMTVKRFPSTSVFLQTFEAFFKAGRHNEAQDFLSKCPGYIRNHADVLNLFYTM 641
Query: 660 KSGGDSAPA 668
KSG + A
Sbjct: 642 KSGEAAMAA 650
>gi|224077560|ref|XP_002305302.1| predicted protein [Populus trichocarpa]
gi|222848266|gb|EEE85813.1| predicted protein [Populus trichocarpa]
Length = 616
Score = 753 bits (1944), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 366/591 (61%), Positives = 459/591 (77%), Gaps = 6/591 (1%)
Query: 76 KNPNFRNPMIC---SYSSEPAMEQKESD---FTVVSDIFYKFSDVNDISKQLELSGVVFT 129
+ PNF N ++SSE ++ + D +V D F KF + +DISK+LEL+ VV +
Sbjct: 26 QKPNFYNKTALFARNFSSEASLVEPTKDPDHVLLVCDAFTKFDEFDDISKELELNSVVIS 85
Query: 130 HEMVLKVLKNLESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLVDV 189
H++VLKVLK+LES P+ A+RFF+WVLEK+S RLSSK+YN ML I+GV+GLV EFW LVD
Sbjct: 86 HDLVLKVLKSLESKPEVAKRFFDWVLEKDSGRLSSKSYNWMLGILGVNGLVVEFWDLVDK 145
Query: 190 MKKKGYGVASHVRNKMTEKFEKEGLESDLEKLKGIFATGSIDNSIEKVASRICKVVRSDI 249
MK KG+GV+ R+++ EKFEKEGL DLEKLKG+FA GS+DNS+EK+ R+ ++VR+ +
Sbjct: 146 MKIKGHGVSGVTRDRVQEKFEKEGLNDDLEKLKGVFAKGSVDNSVEKIGLRVSRIVRNKV 205
Query: 250 WGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMAS 309
WG+DVE +++ L FS+DLVK V++ L EP KALIFFRW E+S KHD SYNAMA
Sbjct: 206 WGEDVEGEIKHLCAEFSSDLVKIVLEHLVMEPVKALIFFRWVEDSELCKHDGRSYNAMAR 265
Query: 310 VLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKP 369
VLGREDCIDRFWKV+DEMRS G+EME T VL RF R M+KEA+DLYEFAM NKP
Sbjct: 266 VLGREDCIDRFWKVIDEMRSNGFEMETGTFDTVLARFMSRKMIKEAIDLYEFAMTGANKP 325
Query: 370 SVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNK 429
S CCT+LLRKIVV KQLDM LFS+VV +F +GNVLTDAML++VLKAL +VG+ GECNK
Sbjct: 326 SAKCCTYLLRKIVVGKQLDMGLFSRVVEIFTGHGNVLTDAMLDAVLKALTNVGKFGECNK 385
Query: 430 ILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHC 489
+L+ M+ GF+AS N++ KIAF L+SAGK DEANEF++HME+SG D+ K W SLI+GHC
Sbjct: 386 VLREMKVAGFVASGNLQRKIAFGLTSAGKNDEANEFVNHMESSGRDLSYKAWASLIEGHC 445
Query: 490 VAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPW 549
V+GDL+KA+DCF+ MVEK+G S AGYA++LLVN YC KNRA+DAC + + V + L PW
Sbjct: 446 VSGDLEKASDCFKIMVEKKGVSGAGYAVELLVNAYCLKNRAMDACNLLCDYVCQNHLCPW 505
Query: 550 HTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPFIKYVSKSGTSDDAIAFLKGMT 609
TTY+ LI LLVQ FKDAL+LL LM+ HG PPF+DPF ++VSKSGT DDAIAF+ MT
Sbjct: 506 QTTYKVLISKLLVQGAFKDALNLLGLMQSHGIPPFIDPFFEFVSKSGTGDDAIAFMNAMT 565
Query: 610 SKRFPSMSVVLCLFAAFFQARRHSEAQDLLSKCPRYVRNHADVLNLLYSKK 660
+K+FPS+SV L +F AFF+A+RH EAQD LSKCP Y+RN ADVLNL SKK
Sbjct: 566 TKKFPSISVALRMFKAFFKAKRHGEAQDFLSKCPIYIRNRADVLNLFCSKK 616
>gi|224077566|ref|XP_002305305.1| predicted protein [Populus trichocarpa]
gi|222848269|gb|EEE85816.1| predicted protein [Populus trichocarpa]
Length = 646
Score = 741 bits (1914), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 381/674 (56%), Positives = 481/674 (71%), Gaps = 38/674 (5%)
Query: 1 MRHQWRFLLFRNYPRSSLQFTGSSYYFQVPFNPNLTLHESLHTLSSLLPTSSHTFYSRFS 60
MRH WR LL+R YP SSL+ S +FQV L + +L L S HT + S
Sbjct: 1 MRHSWRVLLYRKYPLSSLKI---SNHFQV-------LQQHSPSLLRSLSPSLHTLALQNS 50
Query: 61 RLPICYSRLINLIDPKNPNFRNPMIC---SYSSEPAMEQKESD---FTVVSDIFYKFSDV 114
+S + + PNF N ++SSE ++ + D +V D F KF +
Sbjct: 51 H----FSETL-----QKPNFYNKTALFARNFSSEASLVEPTKDPDHVLLVCDAFTKFDEF 101
Query: 115 NDISKQLELSGVVFTHEMVLKVLKNLESSPDEARRFFNWVLEKESERLSSKTYNLMLRIV 174
+DISK+LEL+ VV +H++VLKVLK+LES P+ A+RFF+WVLEK+S RLSSK+YN ML I+
Sbjct: 102 DDISKELELNSVVISHDLVLKVLKSLESKPEVAKRFFDWVLEKDSGRLSSKSYNWMLGIL 161
Query: 175 GVHGLVQEFWGLVDVMKKKGYGVASHVRNKMTEKFEKEGLESDLEKLKGIFATGSIDNSI 234
GV+GLV EFW LVD MK KG+GV+ R+++ EKFEKEGL DLEKLKG+FA GS+DNS+
Sbjct: 162 GVNGLVVEFWDLVDKMKIKGHGVSGVTRDRVQEKFEKEGLNDDLEKLKGVFAKGSVDNSV 221
Query: 235 EKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEES 294
EK+ R+ ++VR+ +WG+DVE +++ L FS+DLVK V++ L EP KALIFFRW E+S
Sbjct: 222 EKIGLRVSRIVRNKVWGEDVEGEIKHLCAEFSSDLVKIVLEHLVMEPVKALIFFRWVEDS 281
Query: 295 GFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKE 354
KHD SYNAMA VLGREDCIDRFWK T VL RF R M+KE
Sbjct: 282 ELCKHDGRSYNAMARVLGREDCIDRFWKT-------------GTFDTVLARFMSRKMIKE 328
Query: 355 AVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSV 414
A+DLYEFAM NKPS CCT+LLRKIVV KQLDM LFS+VV +F +GNVLTDAML++V
Sbjct: 329 AIDLYEFAMTGANKPSAKCCTYLLRKIVVGKQLDMGLFSRVVEIFTGHGNVLTDAMLDAV 388
Query: 415 LKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGS 474
LKAL +VG+ GECNK+L+ M+ GF+AS N++ KIAF L+SAGK DEANEF++HME+SG
Sbjct: 389 LKALTNVGKFGECNKVLREMKVAGFVASGNLQRKIAFGLTSAGKNDEANEFVNHMESSGR 448
Query: 475 DVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDAC 534
D+ K W SLI+GHCV+GDL+KA+DCF+ MVEK+G S AGYA++LLVN YC KN A+DAC
Sbjct: 449 DLSYKAWASLIEGHCVSGDLEKASDCFKIMVEKKGVSGAGYAVELLVNAYCLKNTAMDAC 508
Query: 535 KFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPFIKYVSK 594
+ + V + L PW TTY+ LI LLVQ FKDAL+LL LM+ HG PPF+DPF ++VSK
Sbjct: 509 NLLCDYVCQNHLCPWQTTYKVLISKLLVQGAFKDALNLLGLMQSHGIPPFIDPFFEFVSK 568
Query: 595 SGTSDDAIAFLKGMTSKRFPSMSVVLCLFAAFFQARRHSEAQDLLSKCPRYVRNHADVLN 654
SGT DDAIAF+ MT+K+FPS+SV L +F AFF+A+RH EAQD LSKCP Y+RN ADVLN
Sbjct: 569 SGTGDDAIAFMNAMTTKKFPSISVALRMFKAFFKAKRHGEAQDFLSKCPIYIRNRADVLN 628
Query: 655 LLYSKKSGGDSAPA 668
L SKK D+
Sbjct: 629 LFCSKKFSNDTTAT 642
>gi|356568865|ref|XP_003552628.1| PREDICTED: pentatricopeptide repeat-containing protein At3g02490,
mitochondrial-like [Glycine max]
Length = 629
Score = 710 bits (1832), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 360/673 (53%), Positives = 469/673 (69%), Gaps = 47/673 (6%)
Query: 1 MRHQWRFL--LFRNYPRSSLQFTGSSYYFQVPFNPNLTLHESLHTLSSLLPTSSHTFYSR 58
MRHQWR L L R+ PR +T H + SS +P R
Sbjct: 1 MRHQWRLLHHLLRSRPR-------------------ITYHSQVLPYSSSIP-------RR 34
Query: 59 FSRLPICYSRLINLIDPKNPNFRNPMICSYSSEPAMEQKESDFTVVSDIFYKFSDVNDIS 118
F+ N P NP+FR +SSEP + Q ++D +V+DIF K D D
Sbjct: 35 FA---------ANSTFPLNPSFRR-----FSSEPVLAQADTDHLLVADIFSKPVDSEDFK 80
Query: 119 KQLELSGVVFTHEMVLKVLKNLESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVGVHG 178
L + V TH+ VL VL +S+ D ARRFF WV E ERLSSK YN ML ++G +G
Sbjct: 81 TLLGSNRVSITHDAVLAVLGKFDSNVDAARRFFQWVSENHPERLSSKCYNSMLCVLGTNG 140
Query: 179 LVQEFWGLVDVMKKKGYGVASHVRNKMTEKFEKEGLESDLEKLKGIFATGSIDNSIEKVA 238
V EFW LV+VMKKKGYGV+ V+ ++ E FEK G++ D+ KLKG+F DNS EK
Sbjct: 141 FVDEFWDLVNVMKKKGYGVSKGVKERVLESFEKGGMDGDVAKLKGLF-----DNSKEKNI 195
Query: 239 SRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVK 298
+ +C++VR+++WGDDVE+Q+ DLNV FS+++VK V++ L EP KALIFFRW EESG K
Sbjct: 196 AIVCRIVRNNVWGDDVEKQIEDLNVGFSSEVVKTVLESLVLEPVKALIFFRWLEESGLFK 255
Query: 299 HDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDL 358
HD +YNAMA VLGRED IDRFWK++ +MRS G+EME ET VKVLGRF +R MVK+AV+L
Sbjct: 256 HDGRTYNAMARVLGREDLIDRFWKLVGDMRSAGFEMEAETFVKVLGRFCKRRMVKDAVEL 315
Query: 359 YEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKAL 418
YEFAMA NKP+V CC FLLRK+ K+LD LFS+V++VF NGNVLTD++ N+VLK+L
Sbjct: 316 YEFAMAGANKPTVQCCVFLLRKVAAGKELDTDLFSRVLKVFTGNGNVLTDSVANAVLKSL 375
Query: 419 ISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGD 478
SVGR GE NK+LK ME+ GF+A +++SKIA+RL +AG K++A+EFM+ +E SGS+
Sbjct: 376 TSVGRTGEWNKVLKEMEDCGFVAGGSLQSKIAYRLGAAGNKEQAHEFMNRIEVSGSNPYR 435
Query: 479 KMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVH 538
K W SLI+G+CVAG+LDKA + F+++VEKEG + AGY+ ++L+N+YC NRA+DA K +
Sbjct: 436 KTWESLIQGYCVAGNLDKAFESFKEIVEKEGVASAGYSFNVLMNSYCQMNRAVDASKILC 495
Query: 539 NCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPFIKYVSKSGTS 598
V E LKPWH+TY+ L+ LLVQ GF DAL++L LM+ HGFPPF DPFI+++SKSG+
Sbjct: 496 RLVNEKQLKPWHSTYKLLVTKLLVQGGFTDALNILGLMRTHGFPPFTDPFIEHLSKSGSG 555
Query: 599 DDAIAFLKGMTSKRFPSMSVVLCLFAAFFQARRHSEAQDLLSKCPRYVRNHADVLNLLYS 658
DDA+ FLK MTSKRFPS S+ L +F AFF+ RRH EAQ+ LSKCPRY+RNHADVLNL S
Sbjct: 556 DDAVLFLKAMTSKRFPSTSMFLRMFEAFFKHRRHEEAQNFLSKCPRYIRNHADVLNLFCS 615
Query: 659 KKSGGDSAPAVTA 671
S ++ ++ A
Sbjct: 616 LNSKEAASSSMLA 628
>gi|90657573|gb|ABD96873.1| hypothetical protein [Cleome spinosa]
Length = 666
Score = 710 bits (1832), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 349/677 (51%), Positives = 475/677 (70%), Gaps = 36/677 (5%)
Query: 1 MRHQWRFLLFRNYPRSSLQFTGSSYYFQVPFNPNLTLHESLHTLSSLLPTSSHTFYSRFS 60
MRHQWR LL R+Y RS L + +S +FQV SL +LSS L +
Sbjct: 1 MRHQWRLLLHRSYRRSHLPYPSASSHFQVT-------SISLRSLSSFLRPRPGDGALEQT 53
Query: 61 RLPICYSRLINLIDPKNPNFRNPMICS----------YSSEPAMEQKESDFTVVSDIFYK 110
+ P+ ++P+ CS +SSEPA++ K SD V D+F +
Sbjct: 54 KQPLV--------------LQSPLACSVSLVKSVSRNFSSEPAIDVKPSDDVTVIDVFSR 99
Query: 111 FSDVNDISKQLELSGVVFTHEMVLKVLKNLESSPDEARRFFNWVLEKESERLSSKTYNLM 170
SD ++I K L+LSG+V H++ LKVL+ L+S PD A+RFF WV E ++ +LSSK+YN+M
Sbjct: 100 LSDKDEIKKLLDLSGIVINHDLGLKVLRGLQSRPDAAKRFFQWVTEADAAKLSSKSYNMM 159
Query: 171 LRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRNKMTEKFEKEGLESDLEKLKGIFATGSI 230
LRI+GV+G V EFWGLV MKKKGYGV+++VR+K+ EKF+K+GL+ DLE+LK +FA+GS+
Sbjct: 160 LRILGVNGFVDEFWGLVVDMKKKGYGVSANVRDKVGEKFQKDGLQGDLERLKELFASGSM 219
Query: 231 DNSIEKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRW 290
DNS EKV R+CK+V + W DDVE++LRDL V F ++LVK V+KL EP+KAL+FFRW
Sbjct: 220 DNSAEKVCHRVCKIVLKEEWSDDVEKRLRDLKVEFQSELVKMAVEKLDMEPRKALLFFRW 279
Query: 291 AEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERN 350
+ESG KHDE +YNA+A VLGRE +DRF +++EMR G+EMEMET +V RF +
Sbjct: 280 IDESGLFKHDEGTYNAIARVLGREKFLDRFRNIIEEMRGAGHEMEMETYARVSARFCQTK 339
Query: 351 MVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAM 410
++KEAV+L+EFAMA N P+ +CC LL+KIV +K+L+M LFS+VV+ + E+GN LTD M
Sbjct: 340 LIKEAVELFEFAMAGSNTPTPHCCILLLKKIVTAKELEMGLFSRVVKAYTESGNALTDTM 399
Query: 411 LNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHME 470
LNSVLK++ SV R + N++LK M+EGG+I ++S IA LS GKKDEA E + ME
Sbjct: 400 LNSVLKSIRSVDRFDQSNEVLKVMKEGGYIPGGGLQSVIASGLSRKGKKDEAKELENFME 459
Query: 471 ASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRA 530
ASG+++ DK SL++GHC AG+L++A++CF+ MV KEG S+AGY + LV YC+KN+
Sbjct: 460 ASGNNLDDKALASLVEGHCYAGELEQASECFKNMVGKEGVSYAGYTFERLVLAYCNKNQT 519
Query: 531 IDACKFVHNCVREYDLKPWHTTYEELIKNLLVQR-----GFKDALSLLCLMKDHGFPPFV 585
D K V+ LKPWH+TY+ L++NLL ++ GF++ALSLL +MKDHGFPPFV
Sbjct: 520 RDGYKLFVALVKGNQLKPWHSTYKILVRNLLTKKMARDGGFEEALSLLPMMKDHGFPPFV 579
Query: 586 DPFIKYVSKSGTSDDAIAFLKGMTSKRFPSMSVVLCLFAAFFQARRHSEAQDLLSKCPRY 645
DPF+ YVS++G+ A AFLK MTSK+FPS ++V+ +F A ++ RHSEAQDLLS CP+Y
Sbjct: 580 DPFVDYVSRTGSRAQAFAFLKAMTSKKFPSTTIVIRVFEAMLKSGRHSEAQDLLSMCPKY 639
Query: 646 VRNHADVLNLLYSKKSG 662
+R HADVL L S K G
Sbjct: 640 IRGHADVLELFNSMKPG 656
>gi|449447687|ref|XP_004141599.1| PREDICTED: pentatricopeptide repeat-containing protein At3g02490,
mitochondrial-like [Cucumis sativus]
Length = 656
Score = 701 bits (1809), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 333/574 (58%), Positives = 446/574 (77%), Gaps = 1/574 (0%)
Query: 87 SYSSEPAMEQKESDFTVVSDIFYKFSDVNDISKQLELSGVVFTHEMVLKVLKNLESSPDE 146
++SSEPA EQ ESD V+ DI K DV++I K LE +GVV +H++VL+VL LES+PD+
Sbjct: 72 TFSSEPAAEQ-ESDHAVIVDILSKSRDVDEIRKGLESNGVVISHDLVLEVLGQLESNPDD 130
Query: 147 ARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRNKMT 206
A RFF+WV E+LSSK++NLML I+GV+GLV++FW L MKKKGYG++ VR+K+
Sbjct: 131 AIRFFDWVSGDYGEKLSSKSFNLMLGILGVNGLVKKFWDLNCDMKKKGYGMSKTVRDKVL 190
Query: 207 EKFEKEGLESDLEKLKGIFATGSIDNSIEKVASRICKVVRSDIWGDDVERQLRDLNVTFS 266
EKF+K+GL+S+ EKL+ +FA+GS D S + + S + +++R+++WG+DVE+QLRD++V+FS
Sbjct: 191 EKFDKDGLKSEAEKLRDMFASGSTDKSPDNIGSNVSRLIRTNLWGEDVEQQLRDMSVSFS 250
Query: 267 NDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDE 326
+D+VK +++ L +P KA IFF W +ESG KHDE +YNAMA+VLGREDCIDRFWKV+DE
Sbjct: 251 SDMVKMILEDLSTDPAKAYIFFLWIDESGMFKHDEQTYNAMATVLGREDCIDRFWKVVDE 310
Query: 327 MRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQ 386
MRS+GY+MEMET KVLGRF +R M++EAV+LY FAM+ +KPS +C TFLL+KI VS+Q
Sbjct: 311 MRSQGYKMEMETFTKVLGRFCKRRMIEEAVNLYVFAMSVGDKPSEDCLTFLLKKIAVSEQ 370
Query: 387 LDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMK 446
D+ LFS+ +++F E+GNVL D+M+ +VL++L SVGR GE N++L M+E G++ S +K
Sbjct: 371 FDLDLFSRALKIFSESGNVLKDSMVFAVLRSLSSVGRTGEFNEVLNVMKEYGYVCSGGLK 430
Query: 447 SKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVE 506
K+A+RLS GK DEAN+FM+++EASG + +K W SLI+GHC AGDLDKA+DC KMVE
Sbjct: 431 RKVAYRLSRTGKSDEANDFMNNLEASGCNPDNKTWASLIEGHCAAGDLDKASDCIHKMVE 490
Query: 507 KEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGF 566
K G A YA+DL+VN YC K DA + + V + LKP H+TY+ LI LL+ F
Sbjct: 491 KGGVPSAAYALDLIVNGYCQKKHETDASHLLFDLVDKSQLKPRHSTYKTLINKLLLCGEF 550
Query: 567 KDALSLLCLMKDHGFPPFVDPFIKYVSKSGTSDDAIAFLKGMTSKRFPSMSVVLCLFAAF 626
KDAL LL +M++H FPPF++PFI YVSKSGT+DD + FLKGMTSK+FPS +VVL LF AF
Sbjct: 551 KDALKLLGMMRNHEFPPFIEPFISYVSKSGTADDGLEFLKGMTSKKFPSTTVVLQLFEAF 610
Query: 627 FQARRHSEAQDLLSKCPRYVRNHADVLNLLYSKK 660
FQA RH +AQDLL KCP Y+RNHADVL+L S K
Sbjct: 611 FQAGRHGDAQDLLLKCPGYIRNHADVLDLFCSMK 644
>gi|449482262|ref|XP_004156231.1| PREDICTED: pentatricopeptide repeat-containing protein At3g02490,
mitochondrial-like [Cucumis sativus]
Length = 656
Score = 698 bits (1801), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 332/574 (57%), Positives = 445/574 (77%), Gaps = 1/574 (0%)
Query: 87 SYSSEPAMEQKESDFTVVSDIFYKFSDVNDISKQLELSGVVFTHEMVLKVLKNLESSPDE 146
++SSEPA Q ESD V+ DI K DV++I K LE +GVV +H++VL+VL LES+PD+
Sbjct: 72 TFSSEPAAVQ-ESDHAVIVDILSKSRDVDEIRKGLESNGVVISHDLVLEVLGQLESNPDD 130
Query: 147 ARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRNKMT 206
A RFF+WV E+LSSK++NLML I+GV+GLV++FW L MKKKGYG++ VR+K+
Sbjct: 131 AIRFFDWVSGDYGEKLSSKSFNLMLGILGVNGLVKKFWDLNCDMKKKGYGMSKTVRDKVL 190
Query: 207 EKFEKEGLESDLEKLKGIFATGSIDNSIEKVASRICKVVRSDIWGDDVERQLRDLNVTFS 266
EKF+K+GL+S+ EKL+ +FA+GS D S + + S + +++R+++WG+DVE+QLRD++V+FS
Sbjct: 191 EKFDKDGLKSEAEKLRDMFASGSTDKSPDNIGSNVSRLIRTNLWGEDVEQQLRDMSVSFS 250
Query: 267 NDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDE 326
+D+VK +++ L +P KA IFF W +ESG KHDE +YNAMA+VLGREDCIDRFWKV+DE
Sbjct: 251 SDMVKMILEDLSTDPAKAYIFFLWIDESGMFKHDEQTYNAMATVLGREDCIDRFWKVVDE 310
Query: 327 MRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQ 386
MRS+GY+MEMET KVLGRF +R M++EAV+LY FAM+ +KPS +C TFLL+KI VS+Q
Sbjct: 311 MRSQGYKMEMETFTKVLGRFCKRRMIEEAVNLYVFAMSVGDKPSEDCLTFLLKKIAVSEQ 370
Query: 387 LDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMK 446
D+ LFS+ +++F E+GNVL D+M+ +VL++L SVGR GE N++L M+E G++ S +K
Sbjct: 371 FDLDLFSRALKIFSESGNVLKDSMVFAVLRSLSSVGRTGEFNEVLNVMKEYGYVCSGGLK 430
Query: 447 SKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVE 506
K+A+RLS GK DEAN+FM+++EASG + +K W SLI+GHC AGDLDKA+DC KMVE
Sbjct: 431 RKVAYRLSRTGKSDEANDFMNNLEASGCNPDNKTWASLIEGHCAAGDLDKASDCIHKMVE 490
Query: 507 KEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGF 566
K G A YA+DL+VN YC K DA + + V + LKP H+TY+ LI LL+ F
Sbjct: 491 KGGVPSAAYALDLIVNGYCQKKHETDASHLLFDLVDKSQLKPRHSTYKTLINKLLLCGEF 550
Query: 567 KDALSLLCLMKDHGFPPFVDPFIKYVSKSGTSDDAIAFLKGMTSKRFPSMSVVLCLFAAF 626
KDAL LL +M++H FPPF++PFI YVSKSGT+DD + FLKGMTSK+FPS +VVL LF AF
Sbjct: 551 KDALKLLGMMRNHEFPPFIEPFISYVSKSGTADDGLEFLKGMTSKKFPSTTVVLQLFEAF 610
Query: 627 FQARRHSEAQDLLSKCPRYVRNHADVLNLLYSKK 660
FQA RH +AQDLL KCP Y+RNHADVL+L S K
Sbjct: 611 FQAGRHGDAQDLLLKCPGYIRNHADVLDLFCSMK 644
>gi|297828702|ref|XP_002882233.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297328073|gb|EFH58492.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 667
Score = 684 bits (1764), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 352/667 (52%), Positives = 477/667 (71%), Gaps = 25/667 (3%)
Query: 1 MRHQWR-FLLFRNYPRSSLQFTGSSYYFQVPFNPNLTLHESLHTLSSLLPTSSHTFYSRF 59
MR+QWR LLFR+Y SS F FQV N S + SS LP RF
Sbjct: 1 MRYQWRRLLLFRSYRSSSHPFLSHHSQFQVISN-------STRSFSSFLP-------ERF 46
Query: 60 SRLPICYSR-LINLIDPKNPNFRNPMICSYSSEPAMEQKESDFTVVSDIFYKFSDVNDIS 118
+ + L+ L P + + S+SS+PA+E+K TVV DIF + S +DI
Sbjct: 47 EVGALQQRQCLLALRSP----LTSSVSRSFSSDPAIEEKPPAETVVIDIFSRLSAKDDIR 102
Query: 119 KQLELSGVVFTHEMVLKVLKNLESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVGVHG 178
K+L+ + VV +HE+ L+VL+ LESSPD A FF WVLE +LSSK+YN MLRI+GV+G
Sbjct: 103 KELDSNDVVISHELALRVLRELESSPDVAGSFFKWVLEAYPRKLSSKSYNTMLRILGVNG 162
Query: 179 LVQEFWGLVDVMKKKGYGVASHVRNKMTEKFEKEGLESDLEKLKGIFATGSIDNSIEKVA 238
LV EFW LVD MKKKG+GV+++VRNK+ +KF+K+GLESDLE+LK IFA+GS+DNS++KV
Sbjct: 163 LVDEFWELVDAMKKKGHGVSANVRNKVGDKFQKDGLESDLERLKEIFASGSMDNSVDKVC 222
Query: 239 SRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVK 298
+R+CK+V ++W DVE+QLRDL + F DLVK V++KL +P+KAL+FFRW +ESG K
Sbjct: 223 NRVCKIVMKEVWSADVEKQLRDLKLEFKTDLVKMVLEKLDVDPRKALLFFRWIDESGSFK 282
Query: 299 HDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDL 358
HDE +YNAMA VLG+E +DRF +++E+RS GYEMEMET V+V RF + M+KEAV+L
Sbjct: 283 HDEKTYNAMARVLGKEKFLDRFQHIIEEIRSAGYEMEMETYVRVSARFCQTKMIKEAVEL 342
Query: 359 YEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKAL 418
+EFAMA N P+ +CC+ LL+KIV +K+LDM LF++ V+ + NGNV+ D+ML VLK+L
Sbjct: 343 FEFAMAGSNTPTPHCCSLLLKKIVSAKKLDMDLFTRTVKAYTGNGNVVPDSMLQHVLKSL 402
Query: 419 ISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGD 478
SV R G+ N++LKAM EGG++ S +++S IA LS GKKDEANE ++ MEASG+ + D
Sbjct: 403 RSVDRFGQSNEVLKAMNEGGYVPSGDLQSVIASGLSRKGKKDEANELVNFMEASGNHLDD 462
Query: 479 KMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVH 538
K SL++GHC A DL++A++CF KM+ KEG S+AGYA + LV YC+ +A D K
Sbjct: 463 KAMASLVEGHCDAKDLEEASECFNKMIGKEGVSYAGYAFEKLVLAYCNSFQARDVYKLFT 522
Query: 539 NCVREYDLKPWHTTYEELIKNLLVQR-----GFKDALSLLCLMKDHGFPPFVDPFIKYVS 593
V++ LKPWH+TY+ +++NLL+++ GF++ALSLL +MK+HGFPPFVDPF+ Y+S
Sbjct: 523 ELVKQNQLKPWHSTYKIMVRNLLMKKVARDGGFEEALSLLPMMKNHGFPPFVDPFMDYLS 582
Query: 594 KSGTSDDAIAFLKGMTSKRFPSMSVVLCLFAAFFQARRHSEAQDLLSKCPRYVRNHADVL 653
SGTS +A AFLK +TSK+FPS S+VL +F A ++ RHSEAQDLLS P Y+R +A+VL
Sbjct: 583 NSGTSAEAFAFLKAVTSKKFPSNSMVLRVFEAMLKSARHSEAQDLLSMSPSYIRRNAEVL 642
Query: 654 NLLYSKK 660
L S K
Sbjct: 643 ELFNSMK 649
>gi|356523687|ref|XP_003530467.1| PREDICTED: pentatricopeptide repeat-containing protein At3g02490,
mitochondrial-like [Glycine max]
Length = 628
Score = 677 bits (1748), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 351/671 (52%), Positives = 460/671 (68%), Gaps = 44/671 (6%)
Query: 1 MRHQWRFLLFRNYPRSSLQFTGSSYYFQVPFNPNLTLHESLHTLSSLLPTSSHTFYSRFS 60
MRHQWR L + + F + H S +LP+SS + RF+
Sbjct: 1 MRHQWRLL-----------------HHLLRFRDRILNH------SQVLPSSS-SIPCRFT 36
Query: 61 RLPICYSRLINLIDPKNPNFRNPMICSYSSEPAMEQKESDFTVVSDIFYKFSDVNDISKQ 120
N NP+FR+ +SSEP + Q ++D +V DIF K +D D
Sbjct: 37 ---------ANSTFQLNPSFRH-----FSSEPVLAQADTDNLLVVDIFSKPADSEDFKTL 82
Query: 121 LELSGVVFTHEMVLKVLKNLESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLV 180
L+ + V+ TH+ VL VL L+S+ + ARRFF WV E ERLSSK YN MLR++G +G+V
Sbjct: 83 LDSNRVMITHDAVLAVLWKLDSNVEAARRFFLWVSENHPERLSSKCYNSMLRVLGTNGVV 142
Query: 181 QEFWGLVDVMKKKGYGVASHVRNKMTEKFEKEGLESDLEKLKGIFATGSIDNSIEKVASR 240
EFW LVDVMKKKGYGV+ V+ + E FEK G+ +D+ KLKG++ DN EK +
Sbjct: 143 HEFWDLVDVMKKKGYGVSKGVKEIVLESFEKGGMVADVAKLKGLY-----DNLNEKNIAI 197
Query: 241 ICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHD 300
+C++VR+++W DDVERQ++DLNV FS D+VK V++ L EP KALIFFRW EESG K D
Sbjct: 198 VCRIVRNNVWDDDVERQIKDLNVGFSGDVVKMVLESLASEPAKALIFFRWLEESGMFKQD 257
Query: 301 ESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYE 360
++YNAMA VLGRED IDRFWK++ +MR+ G+EME ET VKVLGRF +R MVK+AV+LYE
Sbjct: 258 GATYNAMARVLGREDSIDRFWKLVGDMRNAGFEMEFETFVKVLGRFCKRRMVKDAVELYE 317
Query: 361 FAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALIS 420
FAM NKP+V CC FLLRK+ K+LDM LF +V++VF +GN+LTD+M ++VLK L S
Sbjct: 318 FAMTGVNKPTVQCCVFLLRKVAAGKELDMDLFLRVLKVFTGSGNLLTDSMADAVLKTLTS 377
Query: 421 VGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKM 480
VGR GE NK+LK ME G N++SKIA+RL +AG K++A+EFM+ +EAS S K
Sbjct: 378 VGRTGEWNKVLKEMEIVG-CCRCNLQSKIAYRLGAAGNKEQAHEFMNRIEASRSSPDRKT 436
Query: 481 WVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNC 540
W SLI+GHCVAG+LDKA + F+++VEKEG + AGY+ D+L+N+YC NRA+DA K +
Sbjct: 437 WDSLIEGHCVAGNLDKAFESFKEIVEKEGVASAGYSFDVLMNSYCQMNRAVDASKILCRL 496
Query: 541 VREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPFIKYVSKSGTSDD 600
V E LKPWH+TY+ L+ LLVQ GF DAL++L LM+ GFPPF DPFI+++SKSG+ +
Sbjct: 497 VNEKKLKPWHSTYKLLVTKLLVQGGFTDALNILGLMRTLGFPPFTDPFIEHLSKSGSGNA 556
Query: 601 AIAFLKGMTSKRFPSMSVVLCLFAAFFQARRHSEAQDLLSKCPRYVRNHADVLNLLYSKK 660
A FLK MTSKRFPS S+ LC+F AFF+ RH EAQ+ LSKCPRY+RNHADVLNL S
Sbjct: 557 AALFLKAMTSKRFPSTSMFLCMFEAFFKNGRHEEAQNFLSKCPRYIRNHADVLNLFCSMN 616
Query: 661 SGGDSAPAVTA 671
S ++ + A
Sbjct: 617 SKEAASSGMLA 627
>gi|15232917|ref|NP_186898.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75264846|sp|Q9M891.1|PP208_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At3g02490, mitochondrial; Flags: Precursor
gi|6957712|gb|AAF32456.1| unknown protein [Arabidopsis thaliana]
gi|51536500|gb|AAU05488.1| At3g02490 [Arabidopsis thaliana]
gi|56381951|gb|AAV85694.1| At3g02490 [Arabidopsis thaliana]
gi|332640296|gb|AEE73817.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 665
Score = 669 bits (1725), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 341/672 (50%), Positives = 477/672 (70%), Gaps = 37/672 (5%)
Query: 1 MRHQWRFLLFRNYPRSSLQFTGSSYYFQVPFNPNLTLHESLHTLSSLLPTSSHTFYSRFS 60
MR+QWR LLFR+Y S F FQV N S + SS L + RF
Sbjct: 1 MRYQWRSLLFRSYRSSPRPFLSHHSRFQVISN-------STRSFSSFL-------HERFG 46
Query: 61 -RLPICYSRLINLIDPKNPNFRNPMICS----YSSEPAMEQKESDFTVVSDIFYKFSDVN 115
+ C L R+P+ S +SSE A+E+K TVV D+F + + +
Sbjct: 47 VQQRQCLFAL-----------RSPLASSVSRRFSSESAIEEKLPAETVVIDVFSRLNGKD 95
Query: 116 DISKQLELSGVVFTHEMVLKVLKNLESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVG 175
+I+K+L+ + VV +HE+ L+VL+ LESSPD A RFF W LE ++LSSK+YN MLRI G
Sbjct: 96 EITKELDSNDVVISHELALRVLRELESSPDVAGRFFKWGLEAYPQKLSSKSYNTMLRIFG 155
Query: 176 VHGLVQEFWGLVDVMKKKGYGVASHVRNKMTEKFEKEGLESDLEKLKGIFATGSIDNSIE 235
V+GLV EFW LVD MKKKG+GV+++VR+++ +KF+K+GLE+DLE+LK +FA+GS+DNS++
Sbjct: 156 VNGLVDEFWRLVDDMKKKGHGVSANVRDRVGDKFKKDGLENDLERLKELFASGSMDNSVD 215
Query: 236 KVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESG 295
KV +R+CK+V ++WG DVE+QLRDL + F +D+VK V++KL +P+KAL+FFRW +ESG
Sbjct: 216 KVCNRVCKIVMKEVWGADVEKQLRDLKLEFKSDVVKMVLEKLDVDPRKALLFFRWIDESG 275
Query: 296 FVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEA 355
KHDE +YNAMA VLG+E +DRF +++E+RS GYEMEMET V+V RF + M+KEA
Sbjct: 276 SFKHDEKTYNAMARVLGKEKFLDRFQHMIEEIRSAGYEMEMETYVRVSARFCQTKMIKEA 335
Query: 356 VDLYEFAMA--CKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNS 413
V+L+EFAMA N P+ +CC+ LL+KIV +K+LDM LF++ ++ + NGNV+ D ML
Sbjct: 336 VELFEFAMAGSISNTPTPHCCSLLLKKIVTAKKLDMDLFTRTLKAYTGNGNVVPDVMLQH 395
Query: 414 VLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASG 473
VLK+L SV R G+ N++LKAM EGG++ S +++S IA LS GKKDEANE ++ MEASG
Sbjct: 396 VLKSLRSVDRFGQSNEVLKAMNEGGYVPSGDLQSVIASGLSRKGKKDEANELVNFMEASG 455
Query: 474 SDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDA 533
+ + DK SL++GHC A DL++A++CF+KM+ KEG S+AGYA + LV YC+ +A D
Sbjct: 456 NHLDDKAMASLVEGHCDAKDLEEASECFKKMIGKEGVSYAGYAFEKLVLAYCNSFQARDV 515
Query: 534 CKFVHNCVREYDLKPWHTTYEELIKNLLVQR-----GFKDALSLLCLMKDHGFPPFVDPF 588
K V++ LKPWH+TY+ +++NLL+++ GF++ALSLL +M++HGFPPFVDPF
Sbjct: 516 YKLFSELVKQNQLKPWHSTYKIMVRNLLMKKVARDGGFEEALSLLPMMRNHGFPPFVDPF 575
Query: 589 IKYVSKSGTSDDAIAFLKGMTSKRFPSMSVVLCLFAAFFQARRHSEAQDLLSKCPRYVRN 648
+ Y+S SGTS +A AFLK +TSK+FPS S+VL +F A ++ RHSEAQDLLS P Y+R
Sbjct: 576 MDYLSNSGTSAEAFAFLKAVTSKKFPSNSMVLRVFEAMLKSARHSEAQDLLSMSPSYIRR 635
Query: 649 HADVLNLLYSKK 660
+A+VL L + K
Sbjct: 636 NAEVLELFNTMK 647
>gi|22326834|ref|NP_197102.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75246487|sp|Q8LPF1.1|PP387_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At5g15980, mitochondrial; Flags: Precursor
gi|20856902|gb|AAM26690.1| AT5g15980/F1N13_120 [Arabidopsis thaliana]
gi|25090366|gb|AAN72285.1| At5g15980/F1N13_120 [Arabidopsis thaliana]
gi|332004849|gb|AED92232.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 668
Score = 642 bits (1655), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 332/669 (49%), Positives = 458/669 (68%), Gaps = 24/669 (3%)
Query: 1 MRHQ-WRFLLFRNYPRSSLQFTGSSYYFQVPFNPNLTLHESLHTLSSLLPTSSHTFYSRF 59
MR+Q WR +L R+Y RS L + S QV + + +H L S R
Sbjct: 1 MRYQQWRLMLLRSYHRSHLPYL--SPCSQVTSISSRSFSSFIHPGIGALQQSEQLCPLRS 58
Query: 60 SRLPICYSRLINLIDPKNPNFRNPMICSYSSEPAMEQKESDFTVVSDIFYKFSDVNDISK 119
P+ S N + S+SSEPA+E+K S V DIF + S ++I K
Sbjct: 59 ---PMTSS----------GNLVKSVGRSFSSEPAVEEKSSAEATVIDIFSRLSGEDEIRK 105
Query: 120 QLELSGVVFTHEMVLKVLKNLESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGL 179
+LE SGVV + ++ LKVL+ LES+PD A+ FF W+ E E LSSK YN+MLRI+G +GL
Sbjct: 106 ELESSGVVISQDLALKVLRKLESNPDVAKSFFQWIKEASPEELSSKNYNMMLRILGGNGL 165
Query: 180 VQEFWGLVDVMKKKGYGVASHVRNKMTEKFEKEGLESDLEKLKGIFATGSIDNSIEKVAS 239
V EFWGLVDVMKKKG+G++++VR+K+ +KF+K+GLESDL +L+ +F + +DNS E V
Sbjct: 166 VDEFWGLVDVMKKKGHGLSANVRDKVGDKFQKDGLESDLLRLRKLFTSDCLDNSAENVCD 225
Query: 240 RICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKH 299
R+CK+V + WGDDVE+++RDLNV F +DLVK +V++L EP+KAL+FFRW +ES KH
Sbjct: 226 RVCKIVMKEEWGDDVEKRVRDLNVEFKSDLVKMIVERLDVEPRKALLFFRWIDESDLFKH 285
Query: 300 DESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLY 359
DE +YNAMA VLG+E +DRF ++ EMRS GYE+E+ET V+V RF + ++KEAVDL+
Sbjct: 286 DEKTYNAMARVLGKEKFLDRFQNIVVEMRSAGYEVEIETYVRVSTRFCQTKLIKEAVDLF 345
Query: 360 EFAMA---CKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLK 416
E AMA N P+ +C LL+KIV +K LDM LFS+ V+V+ +NGN LTD++L SVLK
Sbjct: 346 EIAMAGSSSSNNPTPHCFCLLLKKIVTAKILDMDLFSRAVKVYTKNGNALTDSLLKSVLK 405
Query: 417 ALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDV 476
+L SV R+ + N++LK M+ GG++ S +M+S IA LS GKKDEA+EF+D ME+SG+++
Sbjct: 406 SLRSVDRVEQSNELLKEMKRGGYVPSGDMQSMIASSLSRKGKKDEADEFVDFMESSGNNL 465
Query: 477 GDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKF 536
DK SL++G+C +G+LD+A CF+KMV G S+A Y+ + LV YC+KN+ DA K
Sbjct: 466 DDKAMASLVEGYCDSGNLDEALVCFEKMVGNTGVSYADYSFEKLVLAYCNKNQVRDAYKL 525
Query: 537 VHNCVREYDLKPWHTTYEELIKNLLVQR-----GFKDALSLLCLMKDHGFPPFVDPFIKY 591
+ V + LKP H+TY+ L+ NLL ++ GF++ALSLL +MKDHGFPPF+DPF+ Y
Sbjct: 526 LSAQVTKNQLKPRHSTYKSLVTNLLTKKIARDGGFEEALSLLPIMKDHGFPPFIDPFMSY 585
Query: 592 VSKSGTSDDAIAFLKGMTSKRFPSMSVVLCLFAAFFQARRHSEAQDLLSKCPRYVRNHAD 651
S +G S +A+ FLK MTS FP +SVVL +F ++ RHSEAQDLLS CP Y+RN+ D
Sbjct: 586 FSSTGKSTEALGFLKAMTSNNFPYISVVLRVFETMMKSARHSEAQDLLSLCPNYIRNNPD 645
Query: 652 VLNLLYSKK 660
VL L + K
Sbjct: 646 VLELFNTMK 654
>gi|9755644|emb|CAC01797.1| putative protein [Arabidopsis thaliana]
Length = 645
Score = 638 bits (1645), Expect = e-180, Method: Compositional matrix adjust.
Identities = 311/582 (53%), Positives = 428/582 (73%), Gaps = 8/582 (1%)
Query: 87 SYSSEPAMEQKESDFTVVSDIFYKFSDVNDISKQLELSGVVFTHEMVLKVLKNLESSPDE 146
S+SSEPA+E+K S V DIF + S ++I K+LE SGVV + ++ LKVL+ LES+PD
Sbjct: 50 SFSSEPAVEEKSSAEATVIDIFSRLSGEDEIRKELESSGVVISQDLALKVLRKLESNPDV 109
Query: 147 ARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRNKMT 206
A+ FF W+ E E LSSK YN+MLRI+G +GLV EFWGLVDVMKKKG+G++++VR+K+
Sbjct: 110 AKSFFQWIKEASPEELSSKNYNMMLRILGGNGLVDEFWGLVDVMKKKGHGLSANVRDKVG 169
Query: 207 EKFEKEGLESDLEKLKGIFATGSIDNSIEKVASRICKVVRSDIWGDDVERQLRDLNVTFS 266
+KF+K+GLESDL +L+ +F + +DNS E V R+CK+V + WGDDVE+++RDLNV F
Sbjct: 170 DKFQKDGLESDLLRLRKLFTSDCLDNSAENVCDRVCKIVMKEEWGDDVEKRVRDLNVEFK 229
Query: 267 NDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDE 326
+DLVK +V++L EP+KAL+FFRW +ES KHDE +YNAMA VLG+E +DRF ++ E
Sbjct: 230 SDLVKMIVERLDVEPRKALLFFRWIDESDLFKHDEKTYNAMARVLGKEKFLDRFQNIVVE 289
Query: 327 MRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMA---CKNKPSVNCCTFLLRKIVV 383
MRS GYE+E+ET V+V RF + ++KEAVDL+E AMA N P+ +C LL+KIV
Sbjct: 290 MRSAGYEVEIETYVRVSTRFCQTKLIKEAVDLFEIAMAGSSSSNNPTPHCFCLLLKKIVT 349
Query: 384 SKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASS 443
+K LDM LFS+ V+V+ +NGN LTD++L SVLK+L SV R+ + N++LK M+ GG++ S
Sbjct: 350 AKILDMDLFSRAVKVYTKNGNALTDSLLKSVLKSLRSVDRVEQSNELLKEMKRGGYVPSG 409
Query: 444 NMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQK 503
+M+S IA LS GKKDEA+EF+D ME+SG+++ DK SL++G+C +G+LD+A CF+K
Sbjct: 410 DMQSMIASSLSRKGKKDEADEFVDFMESSGNNLDDKAMASLVEGYCDSGNLDEALVCFEK 469
Query: 504 MVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQ 563
MV G S+A Y+ + LV YC+KN+ DA K + V + LKP H+TY+ L+ NLL +
Sbjct: 470 MVGNTGVSYADYSFEKLVLAYCNKNQVRDAYKLLSAQVTKNQLKPRHSTYKSLVTNLLTK 529
Query: 564 R-----GFKDALSLLCLMKDHGFPPFVDPFIKYVSKSGTSDDAIAFLKGMTSKRFPSMSV 618
+ GF++ALSLL +MKDHGFPPF+DPF+ Y S +G S +A+ FLK MTS FP +SV
Sbjct: 530 KIARDGGFEEALSLLPIMKDHGFPPFIDPFMSYFSSTGKSTEALGFLKAMTSNNFPYISV 589
Query: 619 VLCLFAAFFQARRHSEAQDLLSKCPRYVRNHADVLNLLYSKK 660
VL +F ++ RHSEAQDLLS CP Y+RN+ DVL L + K
Sbjct: 590 VLRVFETMMKSARHSEAQDLLSLCPNYIRNNPDVLELFNTMK 631
>gi|297807625|ref|XP_002871696.1| hypothetical protein ARALYDRAFT_488448 [Arabidopsis lyrata subsp.
lyrata]
gi|297317533|gb|EFH47955.1| hypothetical protein ARALYDRAFT_488448 [Arabidopsis lyrata subsp.
lyrata]
Length = 608
Score = 633 bits (1633), Expect = e-179, Method: Compositional matrix adjust.
Identities = 315/581 (54%), Positives = 430/581 (74%), Gaps = 7/581 (1%)
Query: 87 SYSSEPAMEQKESDFTVVSDIFYKFSDVNDISKQLELSGVVFTHEMVLKVLKNLESSPDE 146
S+SSEPA+E+K S +V DIF + S +DI K+LE S VV +H++ LKVL+ LES+PD
Sbjct: 14 SFSSEPAVEEKSSAEVIVIDIFSRLSGEDDIRKELESSDVVISHDLALKVLRKLESNPDV 73
Query: 147 ARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRNKMT 206
A+RFF W+ E E LSSK YN+MLRI+G +GLV EFWGLVDVMKKKG+G++++VR+K+
Sbjct: 74 AKRFFQWIKEASPEELSSKNYNMMLRILGGNGLVNEFWGLVDVMKKKGHGLSANVRDKVG 133
Query: 207 EKFEKEGLESDLEKLKGIFATGSIDNSIEKVASRICKVVRSDIWGDDVERQLRDLNVTFS 266
EKF+K+GLESDL +L+ +FA+ +D+S E V R+CK+V + WGDDVE+++RDLNV F
Sbjct: 134 EKFQKDGLESDLVRLRKLFASDCLDSSAENVCDRVCKIVMKEEWGDDVEKRVRDLNVEFK 193
Query: 267 NDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDE 326
+DLVK +V+ L P+KAL+FFRW +ESG K+DE +YNAMA VLG+E +DRF +++E
Sbjct: 194 SDLVKMIVESLDVVPRKALLFFRWIDESGLFKNDEKTYNAMARVLGKEKFLDRFQNIVEE 253
Query: 327 MRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMA--CKNKPSVNCCTFLLRKIVVS 384
MRS GYE+E+ET V+V RF + ++KEAVDL+E AMA NKP+ C LL+KIV +
Sbjct: 254 MRSVGYEVEIETYVRVSTRFCQTKLIKEAVDLFEIAMAGSSSNKPTPQCFCLLLKKIVTA 313
Query: 385 KQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSN 444
K LDM LFS+ ++ + NGN +TD++L SVLK+L SV R+ ++LK M++GG++ SS+
Sbjct: 314 KILDMDLFSRALKAYTRNGNAMTDSLLKSVLKSLRSVDRVELSTELLKEMKKGGYVPSSD 373
Query: 445 MKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKM 504
M+S IA LS GKKDEA+EF+D MEASG+++ DK SL++G+C +GDLD+A CF+KM
Sbjct: 374 MQSMIASSLSRKGKKDEADEFVDFMEASGNNLDDKAMASLVEGYCDSGDLDEALVCFEKM 433
Query: 505 VEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQR 564
V +A YA + LV YC+KN+ DA K + V++ LKP H+TY+ L+ NLL ++
Sbjct: 434 VGYAAAFYADYAFEKLVLAYCNKNQVRDAYKLLSAQVQKNQLKPRHSTYKILVTNLLTKK 493
Query: 565 -----GFKDALSLLCLMKDHGFPPFVDPFIKYVSKSGTSDDAIAFLKGMTSKRFPSMSVV 619
GF++ALSLL +MKDHGFPPF+DPF+ Y S +G S +A+ FLK MTSK FPSMSVV
Sbjct: 494 IARDGGFEEALSLLPIMKDHGFPPFIDPFMSYFSTTGKSTEALGFLKAMTSKNFPSMSVV 553
Query: 620 LCLFAAFFQARRHSEAQDLLSKCPRYVRNHADVLNLLYSKK 660
L +F ++ RHSEAQDLLS CP Y+RN+ DVL L + K
Sbjct: 554 LRVFETMMKSARHSEAQDLLSLCPNYIRNNPDVLELFNTMK 594
>gi|298204416|emb|CBI16896.3| unnamed protein product [Vitis vinifera]
Length = 472
Score = 517 bits (1332), Expect = e-144, Method: Compositional matrix adjust.
Identities = 268/473 (56%), Positives = 339/473 (71%), Gaps = 20/473 (4%)
Query: 1 MRHQWRFLLFRNYPRSSLQFTGSSYYFQVPFNPNLTLHESLHTLSSLLPTSSHTFYSRFS 60
MR+QWR LL R + RS L + +F V + + ++L SS L SH
Sbjct: 1 MRNQWRLLLLRTHSRSPLSISHIFSHFPVKSDHS---SQTLRFFSSFLQGHSHH------ 51
Query: 61 RLPICYSRLINLIDPKN-PNFRNPMICSYSSEPAMEQKESDFTVVSDIFYKFSDVNDISK 119
C +ID NF P S+SS+ A+E K D V +DIF K ++I
Sbjct: 52 ----C------VIDSTELRNFSGPRSRSFSSDLALEDKGLDHVVFTDIFSKPKGFDEIKN 101
Query: 120 QLELSGVVFTHEMVLKVLKNLESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGL 179
++E S +V +HE+VLKVL+NLES+P+ AR F+WVL ESERLSSK+YNLML I+G +G
Sbjct: 102 EVESSDIVVSHELVLKVLENLESNPEVARSVFDWVLRAESERLSSKSYNLMLGILGSNGF 161
Query: 180 VQEFWGLVDVMKKKGYGVASHVRNKMTEKFEKEGLESDLEKLKGIFATGSIDNSIEKVAS 239
V EFW LV+VMKKKGYGV+ K E FEKE L SDLEKL+G+FA+GS+D+SI+K+ S
Sbjct: 162 VSEFWDLVEVMKKKGYGVSKAAYVKALENFEKEALGSDLEKLRGLFASGSVDDSIQKICS 221
Query: 240 RICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKH 299
R+ K++RS++WGD+VE QL +L VTFS DLV V++ LG EP KALIFFRW EES VKH
Sbjct: 222 RVSKIIRSEVWGDNVEGQLHNLKVTFSGDLVAMVLENLGLEPMKALIFFRWVEESDLVKH 281
Query: 300 DESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLY 359
D+ +YNAM VLGREDCI+RFWKV DEMR+ GYEME+ T KV+GRF +R M+KE VDLY
Sbjct: 282 DKQTYNAMLRVLGREDCIERFWKVADEMRNAGYEMEVATYFKVVGRFYKRKMIKEVVDLY 341
Query: 360 EFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALI 419
EFAM+ NKPS+ CTFLLRKIVVSK LD+ LFS+VVR + E GN+LT +ML+++LK+L
Sbjct: 342 EFAMSGANKPSMYDCTFLLRKIVVSKVLDISLFSRVVRTYTEGGNILTKSMLDAILKSLT 401
Query: 420 SVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEAS 472
SVGR GECNK+LKAMEEGG++ S M++KIAF LSSA K DEANEFM++ME S
Sbjct: 402 SVGRFGECNKLLKAMEEGGYVVGSGMQNKIAFGLSSARKTDEANEFMNNMEDS 454
>gi|225456884|ref|XP_002277390.1| PREDICTED: pentatricopeptide repeat-containing protein At3g48250,
chloroplastic-like [Vitis vinifera]
Length = 631
Score = 377 bits (968), Expect = e-101, Method: Compositional matrix adjust.
Identities = 208/548 (37%), Positives = 323/548 (58%), Gaps = 3/548 (0%)
Query: 115 NDISKQLELSGVVFTHEMVLKVLKNLESSPDEARRFFNWVLEKESERLSSKTYNLMLRIV 174
+++ +LE S V THE V+ VLK L+ P FFNWV EK R SS Y+L+LR +
Sbjct: 79 DELESELEKSSSVLTHETVIYVLKKLDKDPQRTWNFFNWVTEKNGFRPSSAMYSLILRSL 138
Query: 175 GVHG-LVQEFWGLVDVMKKKGYGVASHVRNKMTEKFEKEGLESDLEKLKGIFATGSIDNS 233
VHG +++FW + MK++G+ + + F+K + S+ L + +N+
Sbjct: 139 -VHGESMKQFWVTIRKMKEQGFCIDKETYLTILGVFKKGKMASEEVALTHFYNRMVQENA 197
Query: 234 IEKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEE 293
+++V ++ ++V +W +VE++L +L +FS++ V V+ +L P KAL FF+W E
Sbjct: 198 MDEVVKKVVELVTMSVWSSEVEKKLGELKNSFSDNFVLHVLRELRGYPLKALRFFQWVGE 257
Query: 294 SGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVK 353
+H +YN +A VLGR+D I FW +++EM+SKG+EM+++T +K+ +F + M++
Sbjct: 258 CPGYEHSSITYNVIARVLGRDDSIGEFWSMVEEMKSKGHEMDIDTYIKISRQFQKNKMLE 317
Query: 354 EAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNS 413
+AV LYE M KPSV CT LLR I +S D+ L +V + GN L A+ +
Sbjct: 318 DAVKLYEIMMDGPYKPSVQDCTMLLRSISLSSNPDLALVFRVTEKYEAVGNSLCKAVYDG 377
Query: 414 VLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASG 473
+ ++L SVGR E KI+++M G + S++ + L A K +EA + +D MEA G
Sbjct: 378 IHRSLTSVGRFDEAGKIMESMRSAGCEPDNITYSQLVYGLCKARKLEEACKLLDEMEACG 437
Query: 474 SDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDA 533
K W LI+GHC A ++DKA CF KM+EK + A +++L+N + S+ R A
Sbjct: 438 CVPDIKTWTILIQGHCAAKEVDKALICFAKMMEKNCDADAD-LLEVLINGFLSQKRIDGA 496
Query: 534 CKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPFIKYVS 593
K + V L PW TY+ +I LL R ++A++LL LMK +PPF +PFI+Y+S
Sbjct: 497 YKLLVEMVNTAHLVPWQATYKLMINKLLGVRKLEEAINLLHLMKKQNYPPFPEPFIEYIS 556
Query: 594 KSGTSDDAIAFLKGMTSKRFPSMSVVLCLFAAFFQARRHSEAQDLLSKCPRYVRNHADVL 653
K GT +DA FL +++K++PS S + +F +FFQ R SEA+DLL KCP ++R H D+
Sbjct: 557 KFGTVEDAGEFLNALSAKKYPSQSAYVHVFESFFQEGRESEAKDLLYKCPHHIRKHPDIC 616
Query: 654 NLLYSKKS 661
L S KS
Sbjct: 617 KLFGSAKS 624
Score = 63.9 bits (154), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 63/121 (52%)
Query: 241 ICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHD 300
I ++V + W D++E +L + +++ V +V+ KL +P++ FF W E +
Sbjct: 68 IVELVLENDWSDELESELEKSSSVLTHETVIYVLKKLDKDPQRTWNFFNWVTEKNGFRPS 127
Query: 301 ESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYE 360
+ Y+ + L + + +FW + +M+ +G+ ++ ET + +LG F + M E V L
Sbjct: 128 SAMYSLILRSLVHGESMKQFWVTIRKMKEQGFCIDKETYLTILGVFKKGKMASEEVALTH 187
Query: 361 F 361
F
Sbjct: 188 F 188
>gi|255540497|ref|XP_002511313.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223550428|gb|EEF51915.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 627
Score = 376 bits (965), Expect = e-101, Method: Compositional matrix adjust.
Identities = 206/551 (37%), Positives = 320/551 (58%), Gaps = 1/551 (0%)
Query: 116 DISKQLELSGVVFTHEMVLKVLKNLESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVG 175
++ QLE S + THE V+ VLK L+ P +A FFNWV ++ + SS Y+LMLRI+
Sbjct: 78 ELETQLENSSPLLTHETVIYVLKKLDKDPHKAWDFFNWVCDRNGFKPSSPLYSLMLRILV 137
Query: 176 VHGLVQEFWGLVDVMKKKGYGVASHVRNKMTEKFEKEGLESDLEKLKGIFATGSIDNSIE 235
++ FW + MK++G+ + F KE ++SD K F +N+++
Sbjct: 138 KKDSMKNFWITLRKMKEQGFYTDEETYLTILGVFRKERMDSDAVAFKHFFDRMVEENAMD 197
Query: 236 KVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESG 295
V + VV + W ++VE++L + + +++ V V+ +L + P KAL FF WA +
Sbjct: 198 SVVKNVVSVVSATEWSNEVEKELEGMGILLTDNFVIRVLKELRNYPLKALQFFNWAGKCE 257
Query: 296 FVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEA 355
+ + +YNA+A VLGR+D I FW V++EM++ G+EM+++T +K+ +F + ++ +A
Sbjct: 258 RYECNTITYNAIARVLGRDDSIGEFWSVVEEMKNAGHEMDIDTYIKISRQFQKNKLMGDA 317
Query: 356 VDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVL 415
V LYEF M KPSV C+ LLR I S D+ L +VV + GN L+ A+ + +
Sbjct: 318 VKLYEFMMDGPFKPSVQDCSMLLRSISASNYPDLNLVFRVVNKYEATGNSLSKAVYDGIH 377
Query: 416 KALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSD 475
++L S+G E K++K M+ G+ + S++ F L A + +EA E +D MEA G
Sbjct: 378 RSLTSIGNFDEAAKMMKCMQTAGYEPDNITYSQLVFGLCKARRLEEACEVLDEMEAHGCL 437
Query: 476 VGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACK 535
K W LI+GHCVA ++ KA C KM+EK A + +L+N + S+ R A
Sbjct: 438 PDIKTWTILIQGHCVANEVGKALMCLAKMMEKHCDPDADL-LAVLINAFLSQKRIDGAYT 496
Query: 536 FVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPFIKYVSKS 595
+ V + L+PW TY+ LI+ LL R ++AL+LL LMK H PPF +PF++Y+S+
Sbjct: 497 LFMDMVDKARLRPWQATYKLLIEKLLEVRKLEEALNLLRLMKQHNHPPFPEPFVQYISRF 556
Query: 596 GTSDDAIAFLKGMTSKRFPSMSVVLCLFAAFFQARRHSEAQDLLSKCPRYVRNHADVLNL 655
GT DDA FLK ++ K +PS S L +F +FF+A RHSEA+DLL KCP ++R H + L
Sbjct: 557 GTVDDAADFLKALSVKEYPSTSAYLNVFQSFFRAGRHSEAKDLLFKCPHHIRKHPKISEL 616
Query: 656 LYSKKSGGDSA 666
S K+ +A
Sbjct: 617 FGSAKTEDATA 627
Score = 83.6 bits (205), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 88/372 (23%), Positives = 161/372 (43%), Gaps = 39/372 (10%)
Query: 115 NDISKQLELSGVVFTHEMVLKVLKNLESSPDEARRFFNWVLEKESERLSSKTYNLMLRIV 174
N++ K+LE G++ T V++VLK L + P +A +FFNW + E ++ TYN + R++
Sbjct: 214 NEVEKELEGMGILLTDNFVIRVLKELRNYPLKALQFFNWAGKCERYECNTITYNAIARVL 273
Query: 175 GVHGLVQEFWGLVDVMKKKGYGVASHVRNKMTEKFEKEGLESDLEKLKGIFATGSIDNSI 234
G + EFW +V+ MK G+ + K++ +F+K L D KL G S+
Sbjct: 274 GRDDSIGEFWSVVEEMKNAGHEMDIDTYIKISRQFQKNKLMGDAVKLYEFMMDGPFKPSV 333
Query: 235 EKVASRICKVVRSDIWGDDVERQLRDLNVTF---------SNDLVKFVVDKLG------- 278
+ C ++ I + DLN+ F N L K V D +
Sbjct: 334 QD-----CSMLLRSISASNYP----DLNLVFRVVNKYEATGNSLSKAVYDGIHRSLTSIG 384
Query: 279 --DEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEM 336
DE K + + + +G+ + D +Y+ + L + ++ +VLDEM + G ++
Sbjct: 385 NFDEAAKMM---KCMQTAGY-EPDNITYSQLVFGLCKARRLEEACEVLDEMEAHGCLPDI 440
Query: 337 ETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLD--MRLFSK 394
+T ++ N V +A+ M P + L+ + K++D LF
Sbjct: 441 KTWTILIQGHCVANEVGKALMCLAKMMEKHCDPDADLLAVLINAFLSQKRIDGAYTLFMD 500
Query: 395 VVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLS 454
+V R T +L ++ L+ V ++ E +L+ M++ +S
Sbjct: 501 MVDKARLRPWQATYKLL---IEKLLEVRKLEEALNLLRLMKQHN---HPPFPEPFVQYIS 554
Query: 455 SAGKKDEANEFM 466
G D+A +F+
Sbjct: 555 RFGTVDDAADFL 566
Score = 65.9 bits (159), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 64/123 (52%)
Query: 239 SRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVK 298
S + +++ + W ++E QL + + +++ V +V+ KL +P KA FF W + K
Sbjct: 64 SSLVELLSVNDWSPELETQLENSSPLLTHETVIYVLKKLDKDPHKAWDFFNWVCDRNGFK 123
Query: 299 HDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDL 358
Y+ M +L ++D + FW L +M+ +G+ + ET + +LG F + M +AV
Sbjct: 124 PSSPLYSLMLRILVKKDSMKNFWITLRKMKEQGFYTDEETYLTILGVFRKERMDSDAVAF 183
Query: 359 YEF 361
F
Sbjct: 184 KHF 186
>gi|449440630|ref|XP_004138087.1| PREDICTED: pentatricopeptide repeat-containing protein At3g48250,
chloroplastic-like [Cucumis sativus]
gi|449524136|ref|XP_004169079.1| PREDICTED: pentatricopeptide repeat-containing protein At3g48250,
chloroplastic-like [Cucumis sativus]
Length = 632
Score = 365 bits (937), Expect = 5e-98, Method: Compositional matrix adjust.
Identities = 202/601 (33%), Positives = 324/601 (53%), Gaps = 16/601 (2%)
Query: 81 RNPMICSYSSEPAMEQKE--SDFTVVSDIFY---------KFSDVNDISK----QLELSG 125
R P + +S + + S FT+ + + + ND S+ +LE
Sbjct: 23 RYPQVTRFSPSSYVSHQSLVSHFTINHPVLFFSSNPQSLLQLVSTNDWSEMLETELETLN 82
Query: 126 VVFTHEMVLKVLKNLESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWG 185
THE V+ VLK L+ P +A FFNW K SS Y+++LRI + ++ FW
Sbjct: 83 PTLTHETVVYVLKRLDKQPQKASEFFNWASGKNGSTQSSSIYSMLLRIFVQNESMKLFWI 142
Query: 186 LVDVMKKKGYGVASHVRNKMTEKFEKEGLESDLEKLKGIFATGSIDNSIEKVASRICKVV 245
+ +MK++G+ + + K +D L + N+++ V ++ +V
Sbjct: 143 TLRLMKERGFYLDEETYKTILGVLRKSKKAADATGLTHFYNRMLQQNAMDSVVQKVVDIV 202
Query: 246 RSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYN 305
W +DV +L +L + S++ V V+ +L + P KAL FF W H+ SYN
Sbjct: 203 LGSDWSNDVPGKLEELGIALSDNFVIRVLKELRNSPLKALSFFHWVGCRPDYDHNTVSYN 262
Query: 306 AMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMAC 365
A+A VLGR+D I+ FW V++EM+ +E++++T +K+ +F + M+ EAV LYE M
Sbjct: 263 AIARVLGRDDSIEAFWGVIEEMKHANHEIDIDTYIKISRQFQKSKMMGEAVKLYELMMDG 322
Query: 366 KNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMG 425
KPS+ C+ LLR I S D+ L +V + F G L+ AM + + ++L S G+
Sbjct: 323 PYKPSLQDCSVLLRTIAASDNPDLSLVYRVAKKFEATGYSLSKAMYDGIHRSLTSTGKFD 382
Query: 426 ECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLI 485
+ I+K+M G+ + S++ F L A + +EA + +D MEA G K W LI
Sbjct: 383 DAENIVKSMRNAGYEPDNVTYSQLVFGLCKARRLEEARKVLDEMEAQGCIPDIKTWTILI 442
Query: 486 KGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYD 545
+GHC A +LD A CF KM+EK A +D+L++ + ++ + A + + +
Sbjct: 443 QGHCNANELDIALVCFAKMIEKNCDPDADL-LDVLISGFLNQKKLNGAYQLLIELTNKAH 501
Query: 546 LKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPFIKYVSKSGTSDDAIAFL 605
++PW TY++LIKNLL R ++A++LL LMK +PPF +PF++Y+SK GT DA FL
Sbjct: 502 VRPWQATYKQLIKNLLEVRKLEEAIALLRLMKKQNYPPFPEPFVQYISKFGTVQDADDFL 561
Query: 606 KGMTSKRFPSMSVVLCLFAAFFQARRHSEAQDLLSKCPRYVRNHADVLNLLYSKKSGGDS 665
K ++SK +PS+S L +F +FF R+SEA+DLL KCP ++R H +V L S +S +
Sbjct: 562 KVLSSKEYPSVSAYLHIFNSFFNEGRYSEAKDLLFKCPHHIRKHNEVCKLFGSAESNTTA 621
Query: 666 A 666
A
Sbjct: 622 A 622
>gi|356564958|ref|XP_003550712.1| PREDICTED: pentatricopeptide repeat-containing protein At3g48250,
chloroplastic-like [Glycine max]
Length = 635
Score = 344 bits (883), Expect = 8e-92, Method: Compositional matrix adjust.
Identities = 206/650 (31%), Positives = 338/650 (52%), Gaps = 31/650 (4%)
Query: 16 SSLQFTGSSYYFQVPFNPNLTLHESLHTLSSLLPTSSHTFYSRFSRLPICYSRLINLIDP 75
SSL+ SS +V N H SLH L S H R PI + +L P
Sbjct: 9 SSLRTLESSLATRVLVTRNQVTHFSLHNPLPLFDRSHHL------RFPITHHKLYFSTKP 62
Query: 76 KNPNFRNPMICSYSSEPAMEQKESDFTVVSDIFYKFSDVNDISKQLELSGVVFTHEMVLK 135
K PN ++ + A+E K LE HE VL
Sbjct: 63 K-PNSIVELLLTNDWSQALELK-----------------------LENRFPSMPHETVLY 98
Query: 136 VLKNLESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLVDVMKKKGY 195
V+K L+ +P++A FFNWV +K R S Y+L++RI+ +++FW + +MK+ G+
Sbjct: 99 VIKRLDKNPEKASCFFNWVCKKVWFRPSCSVYSLIVRILAAKDTMKQFWVTLRMMKENGF 158
Query: 196 GVASHVRNKMTEKFEKEGLESDLEKLKGIFATGSIDNSIEKVASRICKVVRSDIWGDDVE 255
+ ++ F++E ++SD L + +N+++ V S + ++ WGD+V
Sbjct: 159 FLDEETYLTISVGFKREKMDSDSVALTHFYNRMLEENAMQSVVSNVVGIISRSEWGDEVV 218
Query: 256 RQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGRED 315
+L L + S++ V V+ +L P KA FF W + +HD +YNA+A VL R +
Sbjct: 219 GELAKLEIQLSDNFVIRVLKELRKTPLKAYKFFHWVGKQSGYEHDTVTYNAVARVLPRAE 278
Query: 316 CIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCT 375
I+ FW V++EM+ G+E++++T +K+ + M+++AV LYE M KP V C
Sbjct: 279 SIEEFWSVIEEMKRVGHELDIDTYIKITRQLQRNRMMEDAVKLYELMMDGSCKPLVQDCN 338
Query: 376 FLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAME 435
LL+ I + + ++ L +V + + G+ L+ A+ + + ++L S G E I++ M
Sbjct: 339 MLLKSISANDKPNLDLVFRVAKKYESTGHTLSKAIYDGIHRSLTSAGNFDEAENIVRTMR 398
Query: 436 EGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLD 495
G+ + S++ F L + +EA + ++ ME+S K W LI+GHC A ++D
Sbjct: 399 NAGYEPDNITYSQMVFGLCKMRRFEEACKVLEDMESSRCIPDIKTWTILIQGHCSANEVD 458
Query: 496 KAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEE 555
KA CF KM+EK G +D+L + + S+ R A + V R+ + PW TY++
Sbjct: 459 KALLCFAKMIEK-GCDPDADLLDVLADGFLSQKRIEGAYELVAEISRKCRISPWQATYKK 517
Query: 556 LIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPFIKYVSKSGTSDDAIAFLKGMTSKRFPS 615
LI+ LL F++AL LL LMK H +PP+ PF+ Y+SK G+ +DA AFLK ++ K +PS
Sbjct: 518 LIEKLLGVMKFEEALELLRLMKSHNYPPYHLPFVPYISKFGSVEDAEAFLKALSVKSYPS 577
Query: 616 MSVVLCLFAAFFQARRHSEAQDLLSKCPRYVRNHADVLNLLYSKKSGGDS 665
V + +F + F+ R SEA+DLL K P ++R H+ + L S ++ D+
Sbjct: 578 HIVYVQVFESLFREGRLSEAKDLLYKTPHHIRTHSKICKLFGSSETKSDT 627
>gi|242060886|ref|XP_002451732.1| hypothetical protein SORBIDRAFT_04g006810 [Sorghum bicolor]
gi|241931563|gb|EES04708.1| hypothetical protein SORBIDRAFT_04g006810 [Sorghum bicolor]
Length = 608
Score = 343 bits (880), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 207/562 (36%), Positives = 319/562 (56%), Gaps = 18/562 (3%)
Query: 121 LELSGVVFTHEMVLKVL---KNLESSPDEARRFFNWVLEKESER--LSSKTYNLMLRIVG 175
++ +GV +H + L L + A RFF+W + + L+S+++N ML++
Sbjct: 52 IQSAGVDLSHPDTVPALLLDPGLAGNYPAASRFFSWAASDPAAKAALNSRSFNSMLQLAA 111
Query: 176 VHGLVQEFWGLVDVMKKKGYGVASHVRNKMTEKFEKEGLESDLEKLKGIFATGSIDNSIE 235
HG + FW LV M+ KGYG++ +E F + + D + L+ FA + +
Sbjct: 112 AHGDAERFWSLVTSMRSKGYGISKPAFRAASESFRAKDMARDADLLQDAFAAHGRNAAAA 171
Query: 236 KVASRICKVVRSDIWGDDVERQLRDLN---VTFSNDLVKFVVDKLGDEPKKALIFFRWAE 292
+V CK++R+ G D L L+ V + +LV VV+K+G P++A++FF+W E
Sbjct: 172 EV----CKILRAP--GKDDSSNLAMLSESRVEVTEELVALVVEKVGQFPRQAMVFFQWVE 225
Query: 293 ES-GFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNM 351
+S G YN MA VLGREDCI+ F +VL +MR KG EM+ + V V RF +R M
Sbjct: 226 KSAGSGICWGKVYNPMAKVLGREDCIEEFREVLRKMRGKGLEMDRDVYVTVTDRFFKRKM 285
Query: 352 VKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAML 411
V++AVDL+ F + K S L+K+VV+ LD++L ++VV ++ GN +
Sbjct: 286 VEDAVDLFRFMASRPEKLSKEDFVVFLKKVVVTGDLDLKLVTRVVSYYQHAGNEVKALAF 345
Query: 412 NSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEA 471
+SVLK+L SV R+GE ++L AM+EGGF + K + AG +EA+++M +E
Sbjct: 346 DSVLKSLRSVARLGESGRVLMAMKEGGFAPHTVDHEKAILAMCDAGNLEEAHKYMADVEE 405
Query: 472 SGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEG--TSHAGYAIDLLVNTYCSKNR 529
SG +G K+W SL++ + + ++D A CF +M+E+ G + G A++ LV+ C K
Sbjct: 406 SGHKLGSKVWSSLVQKYSLGENVDTAVSCFHEMLERSGNDNENVGSALEALVSGLCKKKG 465
Query: 530 AIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPFI 589
A +A K + N V + + PW TTY+ LI NL+ Q K A +L LMK HG+P F+DP I
Sbjct: 466 AKEAFKVLKNLVSKKIVVPWQTTYKYLIHNLIRQGHLKQAFEVLGLMKSHGYPSFIDPCI 525
Query: 590 KYVSKSGTSDDAIAFLKGMTSKRFPSMSVVLCLFAAFFQARRHSEAQDLLSKCPRYVRNH 649
++SKSGT DDA+ L +SK PS + L LF A + RH AQ LLS+ P ++NH
Sbjct: 526 THISKSGTVDDALGLLNATSSKGLPSRTAHLRLFQALLKEDRHEVAQQLLSQSPASIQNH 585
Query: 650 ADVLNLLYSKKSGGDSAPAVTA 671
ADV + ++S+ + PA A
Sbjct: 586 ADVRD-IFSRIKVEEPIPAALA 606
>gi|356563135|ref|XP_003549820.1| PREDICTED: pentatricopeptide repeat-containing protein At3g48250,
chloroplastic-like [Glycine max]
Length = 635
Score = 326 bits (835), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 178/542 (32%), Positives = 299/542 (55%), Gaps = 4/542 (0%)
Query: 117 ISKQLELSGVVFTHEMVLKVLKNLESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVGV 176
+ ++LE THE V+ VLK +E++P++A FFNWV KE R SS Y L+LR++
Sbjct: 84 LEQELEKCYPSMTHETVVYVLKRMEANPEKAWCFFNWVSAKEWYRPSSSLYGLILRVLAT 143
Query: 177 HGLVQEFWGLVDVMKKKGYGVASHVRNKMTEKFEKEGLESDLEKLKGIFATGSIDNSIEK 236
++ FW + MK KG+ + + F+++ + D L ++ G +N+++
Sbjct: 144 EETIKLFWITLRTMKTKGFYFDEEMYFPILAGFKRKNMNKDRVSLTRFYSQGIQENAMQI 203
Query: 237 VASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGF 296
V +++ ++ WGD+V L L + S++ V V+ +L + P KA FF W +
Sbjct: 204 VVTKVVDIISGSEWGDEVMSNLAKLEIRMSDNFVTRVLKELRNCPLKAYEFFNWVGKQSG 263
Query: 297 VKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAV 356
+HD +YNA+A VL D I++FW V++EM+S G+E++++T +K+ + + M+++AV
Sbjct: 264 YEHDTVTYNAIARVLASTDSIEKFWSVIEEMKSVGHELDIDTYIKISKKLQKNKMMEDAV 323
Query: 357 DLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLK 416
LYE M KPSV C+ LL+ I S ++ L +V + + + L+ A+ + + +
Sbjct: 324 KLYELTMDGSYKPSVKDCSLLLKSISASDDPNLDLVFRVSKKYESTWHTLSKAIYDGIHR 383
Query: 417 ALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDV 476
+L G++ E I+ M G+ + ++ F K DEA + ++ ME+ G
Sbjct: 384 SLSGAGKLDEAESIVNHMRNAGYEPDNITYNQTIFGFCKMRKLDEACKVLEEMESCGFIP 443
Query: 477 GDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKF 536
K W LI+GHCVA ++D+A C +M+EK G + + +L+ ++ + R DA K
Sbjct: 444 EIKTWTILIQGHCVANEVDRALLCLNRMIEK-GCNADAAVLGVLIGSFLGQKRIDDAYKL 502
Query: 537 VHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPFIKYVSKSG 596
+ V ++ P H TY +LI NLL ++AL L CLM++H F P ++PF++Y+SK G
Sbjct: 503 LVEIVSKHGTSPRHGTYAKLIDNLLGIGKLEEALDLHCLMRNHEFTPIIEPFVQYISKFG 562
Query: 597 TSDDAIAFLKGMTSKRFPSMSVVLCLFAAFFQARRHSEAQDLLSKCPRYVRNHADVLNLL 656
+ +DAI FLK + R S SV +F + R S+A+DLLSK P Y+ +L L
Sbjct: 563 SIEDAIKFLKSKGTPR--SHSVYFRVFKSLLGNGRLSDAKDLLSKIP-YISKRKKILELF 619
Query: 657 YS 658
S
Sbjct: 620 SS 621
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 92/434 (21%), Positives = 170/434 (39%), Gaps = 36/434 (8%)
Query: 241 ICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHD 300
I ++V + W +E++L + +++ V +V+ ++ P+KA FF W + +
Sbjct: 71 IVELVLTSDWSKGLEQELEKCYPSMTHETVVYVLKRMEANPEKAWCFFNWVSAKEWYRPS 130
Query: 301 ESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYE 360
S Y + VL E+ I FW L M++KG+ + E +L F +NM K+ V L
Sbjct: 131 SSLYGLILRVLATEETIKLFWITLRTMKTKGFYFDEEMYFPILAGFKRKNMNKDRVSLTR 190
Query: 361 FAMACKNKPSVNCCTFLLRKIVVSKQ-----------LDMRLFSK-VVRVFRENGNVLTD 408
F + ++ + I+ + L++R+ V RV +E N
Sbjct: 191 FYSQGIQENAMQIVVTKVVDIISGSEWGDEVMSNLAKLEIRMSDNFVTRVLKELRNCPLK 250
Query: 409 A------------------MLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIA 450
A N++ + L S + + +++ M+ G + KI+
Sbjct: 251 AYEFFNWVGKQSGYEHDTVTYNAIARVLASTDSIEKFWSVIEEMKSVGHELDIDTYIKIS 310
Query: 451 FRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGT 510
+L ++A + + + GS SL+ A D F+ + E T
Sbjct: 311 KKLQKNKMMEDAVKLYE-LTMDGSYKPSVKDCSLLLKSISASDDPNLDLVFRVSKKYEST 369
Query: 511 SHA-GYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDA 569
H AI ++ S +D + + N +R +P + TY + I R +A
Sbjct: 370 WHTLSKAIYDGIHRSLSGAGKLDEAESIVNHMRNAGYEPDNITYNQTIFGFCKMRKLDEA 429
Query: 570 LSLLCLMKDHGFPPFVDPFIKYVSK---SGTSDDAIAFLKGMTSKRFPSMSVVL-CLFAA 625
+L M+ GF P + + + + D A+ L M K + + VL L +
Sbjct: 430 CKVLEEMESCGFIPEIKTWTILIQGHCVANEVDRALLCLNRMIEKGCNADAAVLGVLIGS 489
Query: 626 FFQARRHSEAQDLL 639
F +R +A LL
Sbjct: 490 FLGQKRIDDAYKLL 503
>gi|297819444|ref|XP_002877605.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297323443|gb|EFH53864.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 618
Score = 324 bits (830), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 183/548 (33%), Positives = 296/548 (54%), Gaps = 8/548 (1%)
Query: 115 NDISKQLELS----GVVFTHEMVLKVLKNLESSPDEARRFFNWVLEKESERLSSKTYNLM 170
ND SK++E + THE + VL+ LE P++A F +WVL S+ Y++M
Sbjct: 69 NDWSKEVEEGLRKPDLSLTHETAIYVLRKLEKYPEKAYYFLDWVLRDSGLSPSTPLYSIM 128
Query: 171 LRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRNKMTEKFEKEGLESDLEKLKGIFATGSI 230
LRI+ ++ FW + MK+ G+ + + + KE ++D + +
Sbjct: 129 LRILVQQRSMKRFWMTLSEMKQGGFYLDEDTYKTIYGELNKEKSKADAVAVAHFYERMLK 188
Query: 231 DNSIEKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRW 290
+N++ VA + VV W +VER+L+++N+ S++ V V+ +L + P KAL FF W
Sbjct: 189 ENAMSVVAGDVSAVVTKVDWSCEVERELQEMNLVLSDNFVIRVLKELREHPLKALAFFHW 248
Query: 291 --AEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSE 348
SG+ +H +YNA VL R + + FW V+DEM++ G+EM+++T +KV +F +
Sbjct: 249 VGGSSSGY-QHSTVTYNAALRVLARPNSVAEFWSVVDEMKTAGHEMDLDTYIKVSRQFQK 307
Query: 349 RNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTD 408
M+ E V LYE+ M KPS+ C+ LLR + D+ L +V R + G L+
Sbjct: 308 SRMITETVKLYEYMMDGPFKPSIQDCSLLLRYLSARPNPDLDLVFRVSRKYESTGKSLSK 367
Query: 409 AMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDH 468
A+ + + ++L SVGR E +I KAM G+ + S++ F L A + +EA +D
Sbjct: 368 AVYDGIHRSLTSVGRFDEAEEITKAMRNAGYEPDNITYSQLVFGLCKAKRLEEARGVLDQ 427
Query: 469 MEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKN 528
MEA G K W LI+GHC +LD+A CF M+EK G +D+L++ + +N
Sbjct: 428 MEAQGCFPDIKTWTILIQGHCKNNELDRALACFANMLEK-GFDIDSNLLDVLIDGFLIQN 486
Query: 529 RAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPF 588
R A F+ V+ ++KPW +TY+ LI LL + K+AL LL LMK +P + + F
Sbjct: 487 RIEGASIFLMEMVKNANVKPWQSTYKRLIDKLLEIKKGKEALDLLQLMKKQNYPAYAEAF 546
Query: 589 IKYVSKSGTSDDAIAFLKGMTSKRFPSMSVVLCLFAAFFQARRHSEAQDLLSKCPRYVRN 648
Y++K GT +DA FL ++SK PS + + AF++ R ++A++LL CP + +
Sbjct: 547 DGYLAKFGTLEDAKKFLDVLSSKDSPSFAAYFHVIEAFYREGRLTDAKNLLFICPHHFKT 606
Query: 649 HADVLNLL 656
H + L
Sbjct: 607 HPKISELF 614
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 82/178 (46%), Gaps = 8/178 (4%)
Query: 243 KVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDES 302
++V + W +VE LR +++ +++ +V+ KL P+KA F W +
Sbjct: 64 QLVLENDWSKEVEEGLRKPDLSLTHETAIYVLRKLEKYPEKAYYFLDWVLRDSGLSPSTP 123
Query: 303 SYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEF- 361
Y+ M +L ++ + RFW L EM+ G+ ++ +T + G ++ +AV + F
Sbjct: 124 LYSIMLRILVQQRSMKRFWMTLSEMKQGGFYLDEDTYKTIYGELNKEKSKADAVAVAHFY 183
Query: 362 -AMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKAL 418
M +N SV VV+K + +V R +E VL+D + VLK L
Sbjct: 184 ERMLKENAMSVVAGDV---SAVVTK---VDWSCEVERELQEMNLVLSDNFVIRVLKEL 235
>gi|15228363|ref|NP_190408.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75207690|sp|Q9STK5.1|PP269_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At3g48250, chloroplastic; Flags: Precursor
gi|4678363|emb|CAB41173.1| putative protein [Arabidopsis thaliana]
gi|332644870|gb|AEE78391.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 621
Score = 315 bits (807), Expect = 5e-83, Method: Compositional matrix adjust.
Identities = 180/549 (32%), Positives = 293/549 (53%), Gaps = 8/549 (1%)
Query: 115 NDISKQLELS----GVVFTHEMVLKVLKNLESSPDEARRFFNWVLEKESERLSSKTYNLM 170
ND SK++E + THE + VL+ LE P++A F +WVL S+ Y++M
Sbjct: 70 NDWSKEVEEGLRKPDMSLTHETAIYVLRKLEKYPEKAYYFLDWVLRDSGLSPSTPLYSIM 129
Query: 171 LRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRNKMTEKFEKEGLESDLEKLKGIFATGSI 230
LRI+ ++ FW + MK+ G+ + + + KE ++D + +
Sbjct: 130 LRILVQQRSMKRFWMTLREMKQGGFYLDEDTYKTIYGELSKEKSKADAVAVAHFYERMLK 189
Query: 231 DNSIEKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRW 290
+N++ VA + VV W +VER+L+++ + S++ V V+ +L + P KAL FF W
Sbjct: 190 ENAMSVVAGEVSAVVTKGDWSCEVERELQEMKLVLSDNFVIRVLKELREHPLKALAFFHW 249
Query: 291 AEESGFV---KHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFS 347
G +H +YNA VL R + + FW V+DEM++ GY+M+++T +KV +F
Sbjct: 250 VGGGGSSSGYQHSTVTYNAALRVLARPNSVAEFWSVVDEMKTAGYDMDLDTYIKVSRQFQ 309
Query: 348 ERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLT 407
+ M+ E V LYE+ M KPS+ C+ LLR + S D+ L +V R + G L+
Sbjct: 310 KSRMMAETVKLYEYMMDGPFKPSIQDCSLLLRYLSGSPNPDLDLVFRVSRKYESTGKSLS 369
Query: 408 DAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMD 467
A+ + + ++L SVGR E +I KAM G+ + S++ F L A + +EA +D
Sbjct: 370 KAVYDGIHRSLTSVGRFDEAEEITKAMRNAGYEPDNITYSQLVFGLCKAKRLEEARGVLD 429
Query: 468 HMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSK 527
MEA G K W LI+GHC +LDKA CF M+EK G +D+L++ +
Sbjct: 430 QMEAQGCFPDIKTWTILIQGHCKNNELDKALACFANMLEK-GFDIDSNLLDVLIDGFVIH 488
Query: 528 NRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDP 587
N+ A F+ V+ ++KPW +TY+ LI LL + ++AL LL +MK +P + +
Sbjct: 489 NKFEGASIFLMEMVKNANVKPWQSTYKLLIDKLLKIKKSEEALDLLQMMKKQNYPAYAEA 548
Query: 588 FIKYVSKSGTSDDAIAFLKGMTSKRFPSMSVVLCLFAAFFQARRHSEAQDLLSKCPRYVR 647
F Y++K GT +DA FL ++SK PS + + AF++ R ++A++LL CP + +
Sbjct: 549 FDGYLAKFGTLEDAKKFLDVLSSKDSPSFAAYFHVIEAFYREGRLTDAKNLLFICPHHFK 608
Query: 648 NHADVLNLL 656
H + L
Sbjct: 609 THPKISELF 617
Score = 58.5 bits (140), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/178 (23%), Positives = 80/178 (44%), Gaps = 4/178 (2%)
Query: 241 ICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHD 300
+ ++V + W +VE LR +++ +++ +V+ KL P+KA F W +
Sbjct: 63 MLQLVLENDWSKEVEEGLRKPDMSLTHETAIYVLRKLEKYPEKAYYFLDWVLRDSGLSPS 122
Query: 301 ESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYE 360
Y+ M +L ++ + RFW L EM+ G+ ++ +T + G S+ +AV +
Sbjct: 123 TPLYSIMLRILVQQRSMKRFWMTLREMKQGGFYLDEDTYKTIYGELSKEKSKADAVAVAH 182
Query: 361 FAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKAL 418
F + +++ + +V +V R +E VL+D + VLK L
Sbjct: 183 FYERMLKENAMSVVAGEVSAVVTKGDWS----CEVERELQEMKLVLSDNFVIRVLKEL 236
>gi|115442501|ref|NP_001045530.1| Os01g0970900 [Oryza sativa Japonica Group]
gi|15289974|dbj|BAB63669.1| pentatricopeptide (PPR) repeat-containing protein -like [Oryza
sativa Japonica Group]
gi|113535061|dbj|BAF07444.1| Os01g0970900 [Oryza sativa Japonica Group]
gi|125573469|gb|EAZ14984.1| hypothetical protein OsJ_04919 [Oryza sativa Japonica Group]
gi|215678751|dbj|BAG95188.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215693250|dbj|BAG88632.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 573
Score = 313 bits (801), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 192/545 (35%), Positives = 279/545 (51%), Gaps = 11/545 (2%)
Query: 131 EMVLKVLKNLESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLV--QEFWGLVD 188
E VL L+ L P A FF + L S YNLMLR + H FW +
Sbjct: 30 ESVLYSLRTLSKDPSVALAFFRRS-QAGGHPLGSAAYNLMLRTLASHPTSAHSHFWPFLR 88
Query: 189 VMKKKGYGVASHVRNKMTEKFEKEGLESDLEKLKGIFATGSIDNSIEKVASRICKVVRSD 248
M G+ + F+K L +D L +A D S VR+
Sbjct: 89 DMNDAGHSIDQGTYLAALASFKKASLTADYASLTAHYAKAQEDAKGGTPTSAAADAVRAL 148
Query: 249 IWGDD------VERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDES 302
G D ++ +L +++ + V V+ ++ D P KAL FFRWA KH
Sbjct: 149 EDGSDSDASAELDEKLEGVDLPLTETAVARVLREVRDHPIKALAFFRWAGRQIGYKHGSV 208
Query: 303 SYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFA 362
SYNAM VLGRE+ + FW ++ EM++ G ++++T VK+ +F +R+M+ EAV+LYE
Sbjct: 209 SYNAMVRVLGREESMREFWDLIQEMKADGIHVDIDTYVKLSRQFQKRHMLTEAVELYELM 268
Query: 363 MACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVG 422
M KPS L+R+I + D+ L +VVR F T + + + +AL S G
Sbjct: 269 MDGPYKPSKQDGPVLIRRIALGPSPDLELVYRVVRKFEAVWEFKTKDVFDGIHRALTSNG 328
Query: 423 RMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWV 482
R E +I+K M+ G + S++ F L A + DEA + +D MEA G K W
Sbjct: 329 RFDEAAEIVKRMKGEGHQPDNITYSQLIFGLCKANRFDEARKALDEMEAEGCVPDLKTWT 388
Query: 483 SLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVR 542
LI+GHC AG+++KA F +MVEK + A +D++V CS ++ + F V
Sbjct: 389 MLIQGHCAAGEVEKALQYFTEMVEKNLEADAAL-LDVMVKGLCSDDKIDASYAFFVEMVD 447
Query: 543 EYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPFIKYVSKSGTSDDAI 602
+ +L PW TY+ +I LL + ++AL LL MK FPPF DPF +++K GT DDA
Sbjct: 448 KANLSPWQGTYKHIIGELLRVKKLEEALGLLRSMKARKFPPFADPFPTHIAKYGTFDDAR 507
Query: 603 AFLKGMT-SKRFPSMSVVLCLFAAFFQARRHSEAQDLLSKCPRYVRNHADVLNLLYSKKS 661
FLK +T + ++PS + L +F +FF R+SEAQDLL KCP ++R H DV L S K
Sbjct: 508 QFLKALTVNNKYPSPTAYLHVFKSFFTEGRYSEAQDLLYKCPFHIRKHPDVTELFESIKV 567
Query: 662 GGDSA 666
+SA
Sbjct: 568 ESESA 572
Score = 58.9 bits (141), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 77/400 (19%), Positives = 163/400 (40%), Gaps = 23/400 (5%)
Query: 116 DISKQLELSGVVFTHEMVLKVLKNLESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVG 175
++ ++LE + T V +VL+ + P +A FF W + + S +YN M+R++G
Sbjct: 159 ELDEKLEGVDLPLTETAVARVLREVRDHPIKALAFFRWAGRQIGYKHGSVSYNAMVRVLG 218
Query: 176 VHGLVQEFWGLVDVMKKKGYGVASHVRNKMTEKFEKEGLESDLEKLKGIFATGSIDNSIE 235
++EFW L+ MK G V K++ +F+K + ++ +L + G S +
Sbjct: 219 REESMREFWDLIQEMKADGIHVDIDTYVKLSRQFQKRHMLTEAVELYELMMDGPYKPSKQ 278
Query: 236 K---VASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIF-FRWA 291
+ RI D+ + V R +R + +F + D +AL R+
Sbjct: 279 DGPVLIRRIALGPSPDL--ELVYRVVRKFEAVW-----EFKTKDVFDGIHRALTSNGRFD 331
Query: 292 EESGFVKH--------DESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVL 343
E + VK D +Y+ + L + + D K LDEM ++G +++T ++
Sbjct: 332 EAAEIVKRMKGEGHQPDNITYSQLIFGLCKANRFDEARKALDEMEAEGCVPDLKTWTMLI 391
Query: 344 GRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENG 403
V++A+ + + + +++ + ++D V V + N
Sbjct: 392 QGHCAAGEVEKALQYFTEMVEKNLEADAALLDVMVKGLCSDDKIDASYAFFVEMVDKANL 451
Query: 404 NVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEAN 463
+ ++ L+ V ++ E +L++M+ F ++ ++ G D+A
Sbjct: 452 SPW-QGTYKHIIGELLRVKKLEEALGLLRSMKARKFPPFAD---PFPTHIAKYGTFDDAR 507
Query: 464 EFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQK 503
+F+ + + ++ + K G +A D K
Sbjct: 508 QFLKALTVNNKYPSPTAYLHVFKSFFTEGRYSEAQDLLYK 547
>gi|125529279|gb|EAY77393.1| hypothetical protein OsI_05381 [Oryza sativa Indica Group]
Length = 573
Score = 311 bits (797), Expect = 7e-82, Method: Compositional matrix adjust.
Identities = 191/545 (35%), Positives = 279/545 (51%), Gaps = 11/545 (2%)
Query: 131 EMVLKVLKNLESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLV--QEFWGLVD 188
E VL L+ L P A FF + L S YNLMLR + H FW +
Sbjct: 30 ESVLYSLRTLSKDPSVALAFFRRS-QAGGHPLGSAAYNLMLRTLASHPTSAHSHFWPFLR 88
Query: 189 VMKKKGYGVASHVRNKMTEKFEKEGLESDLEKLKGIFATGSIDNSIEKVASRICKVVRSD 248
M G+ + F+K L +D L +A D S VR+
Sbjct: 89 DMNDAGHSIDQGTYLAALASFKKASLTADYASLTAHYAKAQEDAKGGTPTSAAADAVRAL 148
Query: 249 IWGDD------VERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDES 302
G D ++ +L +++ + V V+ ++ D P KAL FFRWA KH
Sbjct: 149 EDGSDSDASAELDEKLEGVDLPLTETAVARVLREVRDHPIKALAFFRWAGRQIGYKHGSV 208
Query: 303 SYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFA 362
SYNAM VLGRE+ + FW ++ EM++ G ++++T VK+ +F +R+M+ EAV+LYE
Sbjct: 209 SYNAMVRVLGREESMREFWDLIQEMKADGIHVDIDTYVKLSRQFQKRHMLTEAVELYELM 268
Query: 363 MACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVG 422
M KPS L+R+I + D+ L +VVR F T + + + +AL S G
Sbjct: 269 MDGPYKPSKQDGPVLIRRIALGPSPDLELVYRVVRKFEAVWEFKTKDVFDGIHRALTSNG 328
Query: 423 RMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWV 482
R E +I+K M+ G + S++ F L A + DEA + +D MEA G K W
Sbjct: 329 RFDEAAEIVKRMKGEGHQPDNITYSQLIFGLCKANRFDEARKALDEMEAEGCVPDLKTWT 388
Query: 483 SLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVR 542
LI+GHC AG+++KA F +MVEK + A +D++V CS ++ + F V
Sbjct: 389 MLIQGHCAAGEVEKALQYFTEMVEKNLEADAAL-LDVMVKGLCSDDKIDASYAFFVEMVD 447
Query: 543 EYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPFIKYVSKSGTSDDAI 602
+ +L PW TY+ +I LL + ++AL LL MK FPPF DPF +++K GT DDA
Sbjct: 448 KANLSPWQGTYKHIIGELLRVKKLEEALGLLRSMKARKFPPFADPFPTHIAKYGTFDDAR 507
Query: 603 AFLKGMT-SKRFPSMSVVLCLFAAFFQARRHSEAQDLLSKCPRYVRNHADVLNLLYSKKS 661
F+K +T + ++PS + L +F +FF R+SEAQDLL KCP ++R H DV L S K
Sbjct: 508 QFVKALTVNNKYPSPTAYLHVFKSFFTEGRYSEAQDLLYKCPFHIRKHPDVTELFESIKV 567
Query: 662 GGDSA 666
+SA
Sbjct: 568 ESESA 572
Score = 58.5 bits (140), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 77/400 (19%), Positives = 163/400 (40%), Gaps = 23/400 (5%)
Query: 116 DISKQLELSGVVFTHEMVLKVLKNLESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVG 175
++ ++LE + T V +VL+ + P +A FF W + + S +YN M+R++G
Sbjct: 159 ELDEKLEGVDLPLTETAVARVLREVRDHPIKALAFFRWAGRQIGYKHGSVSYNAMVRVLG 218
Query: 176 VHGLVQEFWGLVDVMKKKGYGVASHVRNKMTEKFEKEGLESDLEKLKGIFATGSIDNSIE 235
++EFW L+ MK G V K++ +F+K + ++ +L + G S +
Sbjct: 219 REESMREFWDLIQEMKADGIHVDIDTYVKLSRQFQKRHMLTEAVELYELMMDGPYKPSKQ 278
Query: 236 K---VASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIF-FRWA 291
+ RI D+ + V R +R + +F + D +AL R+
Sbjct: 279 DGPVLIRRIALGPSPDL--ELVYRVVRKFEAVW-----EFKTKDVFDGIHRALTSNGRFD 331
Query: 292 EESGFVKH--------DESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVL 343
E + VK D +Y+ + L + + D K LDEM ++G +++T ++
Sbjct: 332 EAAEIVKRMKGEGHQPDNITYSQLIFGLCKANRFDEARKALDEMEAEGCVPDLKTWTMLI 391
Query: 344 GRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENG 403
V++A+ + + + +++ + ++D V V + N
Sbjct: 392 QGHCAAGEVEKALQYFTEMVEKNLEADAALLDVMVKGLCSDDKIDASYAFFVEMVDKANL 451
Query: 404 NVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEAN 463
+ ++ L+ V ++ E +L++M+ F ++ ++ G D+A
Sbjct: 452 SPW-QGTYKHIIGELLRVKKLEEALGLLRSMKARKFPPFAD---PFPTHIAKYGTFDDAR 507
Query: 464 EFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQK 503
+F+ + + ++ + K G +A D K
Sbjct: 508 QFVKALTVNNKYPSPTAYLHVFKSFFTEGRYSEAQDLLYK 547
>gi|224133698|ref|XP_002321639.1| predicted protein [Populus trichocarpa]
gi|222868635|gb|EEF05766.1| predicted protein [Populus trichocarpa]
Length = 476
Score = 303 bits (776), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 164/477 (34%), Positives = 267/477 (55%), Gaps = 1/477 (0%)
Query: 190 MKKKGYGVASHVRNKMTEKFEKEGLESDLEKLKGIFATGSIDNSIEKVASRICKVVRSDI 249
MK++G+ + + +KE + +D+ LK + +N+ + V + +++
Sbjct: 1 MKEEGFYIDEETYLTIMGICKKEKMANDVAALKHFYDRMIDENAKDNVVKDVVRIILERE 60
Query: 250 WGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMAS 309
W +VE++L + + +++ V V+ +L P KAL FF+W + +H+ +YNA+
Sbjct: 61 WNKEVEKKLVGMRIVLTDNFVIRVLKELRSYPVKALRFFQWVDRREGYQHNTVTYNALVR 120
Query: 310 VLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKP 369
VLGR+D I FW V+DEM++ GYEM+++T +K+ +F + ++++AV LYEF M KP
Sbjct: 121 VLGRDDSIGEFWSVVDEMKNAGYEMDIDTYIKISRQFQKIKLMEDAVRLYEFMMDGPFKP 180
Query: 370 SVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNK 429
SV C LLR + S D+ L S+VV ++ GN L+ ++ + + ++ S G+ E K
Sbjct: 181 SVQDCYILLRSVAASDNPDLDLVSRVVDGYKATGNSLSKSVYDGMHRSFTSAGKFDEAEK 240
Query: 430 ILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHC 489
I+KAM + G+ + S++ F L + + +EA + +D MEA G K W LI+GH
Sbjct: 241 IVKAMRDAGYEPDNITYSQLVFGLCKSKRLEEACKVLDEMEAGGCIPDIKTWTILIQGHF 300
Query: 490 VAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPW 549
A +DK C KM EK A +D+LV + S+ + A F+ V + L PW
Sbjct: 301 AANQVDKGLLCLVKMTEKNTDPDADL-LDVLVKGFLSQRKMDGAYTFLVEMVNKLRLVPW 359
Query: 550 HTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPFIKYVSKSGTSDDAIAFLKGMT 609
TY+ LI+ LL R ++A LL LMK H +PPF +PF +Y+SK GT +DA+ F K ++
Sbjct: 360 QATYKLLIEKLLQVRKLEEATDLLRLMKKHNYPPFPEPFDQYISKFGTVEDAVNFFKVLS 419
Query: 610 SKRFPSMSVVLCLFAAFFQARRHSEAQDLLSKCPRYVRNHADVLNLLYSKKSGGDSA 666
K +PS L + +F + R SEA+DLL KCP ++R + L S K+G +A
Sbjct: 420 VKEYPSSVAYLRMLDSFLREGRDSEARDLLFKCPHHIRKDHKISKLFGSAKTGDKTA 476
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 84/335 (25%), Positives = 159/335 (47%), Gaps = 18/335 (5%)
Query: 116 DISKQLELSGVVFTHEMVLKVLKNLESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVG 175
++ K+L +V T V++VLK L S P +A RFF WV +E + ++ TYN ++R++G
Sbjct: 64 EVEKKLVGMRIVLTDNFVIRVLKELRSYPVKALRFFQWVDRREGYQHNTVTYNALVRVLG 123
Query: 176 VHGLVQEFWGLVDVMKKKGYGVASHVRNKMTEKFEKEGLESDLEKLKGIFATGSIDNSIE 235
+ EFW +VD MK GY + K++ +F+K L D +L G S++
Sbjct: 124 RDDSIGEFWSVVDEMKNAGYEMDIDTYIKISRQFQKIKLMEDAVRLYEFMMDGPFKPSVQ 183
Query: 236 KVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLG---------DEPKKALI 286
+ V SD D+ ++ D N L K V D + DE +K +
Sbjct: 184 DCYILLRSVAASDNPDLDLVSRVVDGYKATGNSLSKSVYDGMHRSFTSAGKFDEAEKIVK 243
Query: 287 FFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMET-CVKVLGR 345
R ++G+ + D +Y+ + L + ++ KVLDEM + G +++T + + G
Sbjct: 244 AMR---DAGY-EPDNITYSQLVFGLCKSKRLEEACKVLDEMEAGGCIPDIKTWTILIQGH 299
Query: 346 FSERNMVKEAVDLYEFAMACKNK-PSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGN 404
F+ + K + L + M KN P + L++ + +++D ++ +V + +
Sbjct: 300 FAANQVDKGLLCLVK--MTEKNTDPDADLLDVLVKGFLSQRKMD-GAYTFLVEMVNKLRL 356
Query: 405 VLTDAMLNSVLKALISVGRMGECNKILKAMEEGGF 439
V A +++ L+ V ++ E +L+ M++ +
Sbjct: 357 VPWQATYKLLIEKLLQVRKLEEATDLLRLMKKHNY 391
>gi|62321124|dbj|BAD94238.1| hypothetical protein [Arabidopsis thaliana]
Length = 291
Score = 295 bits (756), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 143/277 (51%), Positives = 199/277 (71%), Gaps = 5/277 (1%)
Query: 389 MRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSK 448
M LFS+ V+V+ +NGN LTD++L SVLK+L SV R+ + N++LK M+ GG++ S +M+S
Sbjct: 1 MDLFSRAVKVYTKNGNALTDSLLKSVLKSLRSVDRVEQSNELLKEMKRGGYVPSGDMQSM 60
Query: 449 IAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKE 508
IA LS GKKDEA+EF+D ME+SG+++ DK SL++G+C +G+LD+A CF+KMV
Sbjct: 61 IASSLSRKGKKDEADEFVDFMESSGNNLDDKAMASLVEGYCDSGNLDEALVCFEKMVGNT 120
Query: 509 GTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQR---- 564
G S+A Y+ + LV YC+KN+ DA K + V + LKP H+TY+ L+ NLL ++
Sbjct: 121 GVSYADYSFEKLVLAYCNKNQVRDAYKLLSAQVTKNQLKPRHSTYKSLVTNLLTKKIARD 180
Query: 565 -GFKDALSLLCLMKDHGFPPFVDPFIKYVSKSGTSDDAIAFLKGMTSKRFPSMSVVLCLF 623
GF++ALSLL +MKDHGFPPF+DPF+ Y S +G S +A+ FLK MTS FP +SVVL +F
Sbjct: 181 GGFEEALSLLPIMKDHGFPPFIDPFMSYFSSTGKSTEALGFLKAMTSNNFPYISVVLRVF 240
Query: 624 AAFFQARRHSEAQDLLSKCPRYVRNHADVLNLLYSKK 660
++ RHSEAQDLLS CP Y+RN+ DVL L + K
Sbjct: 241 ETMMKSARHSEAQDLLSLCPNYIRNNPDVLELFNTMK 277
>gi|326498263|dbj|BAJ98559.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 592
Score = 290 bits (743), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 181/547 (33%), Positives = 274/547 (50%), Gaps = 18/547 (3%)
Query: 131 EMVLKVLKNLESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQE--FWGLVD 188
+ VL L+ L P +A F L YNLMLR + + FW +
Sbjct: 44 DAVLYSLRGLSKDPPQALSLFRRA-AASGHPLGPAAYNLMLRTLASTPAAAQAHFWPFLR 102
Query: 189 VMKKKGYGVASHVRNKMTEKFEKEGLESDLEKLKGIFATGSIDNSIEKVA--SRICKVVR 246
M+ G+ V F++ L +D L A D++ + VR
Sbjct: 103 DMEAAGHSVDQGTYLAALASFKRASLTTDYATLSARLAKSRADHAAAGGTPLTAAADAVR 162
Query: 247 S-----DIWG--DDVERQLRDLN---VTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGF 296
D G +++ER+L + + + V V+ + D P KAL FFRWA
Sbjct: 163 GLDLELDQAGLDEELERKLEGVAEQLMPLTEAAVAGVLREARDVPSKALAFFRWAGRQRG 222
Query: 297 VKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAV 356
+H +YNAMA VLGRED + FW+++ EM++ G ++++T +K+ +F +R+M+ EAV
Sbjct: 223 YEHGSVAYNAMARVLGREDSLREFWELVQEMKAGGVHVDIDTYMKLSRQFQKRHMMTEAV 282
Query: 357 DLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLK 416
+LYE M KP+ LLR+I + + D+ L +VVR F T + + + +
Sbjct: 283 ELYELMMDGPYKPAQQDGPLLLRRIAMGPEPDLELVYRVVRKFEAVYEFKTKNVFDGIHR 342
Query: 417 ALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDV 476
AL S GR E +I++ M G + S++ F L A K DEA + +D MEA G
Sbjct: 343 ALTSNGRFDEAAEIVERMRTAGHQPDNITYSQLIFGLCKAAKCDEARQVLDEMEAEGCTP 402
Query: 477 GDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKF 536
K W LI+GHC AG++DKA +M+EK+ + A +D++V C +++ A
Sbjct: 403 DLKTWTMLIQGHCAAGEVDKALQYLTEMIEKDLEADADL-LDVMVKGLCRQDKFDAAYTL 461
Query: 537 VHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPFIKYVSKSG 596
V L PW TY+ +I LL + ++AL+LL MK FPPF DPF +++ G
Sbjct: 462 FVEMVDNAKLTPWQGTYKHIIAELLRVKKLEEALALLKSMKARKFPPFADPFPSNIAEYG 521
Query: 597 TSDDAIAFLKGM--TSKRFPSMSVVLCLFAAFFQARRHSEAQDLLSKCPRYVRNHADVLN 654
T +DA FLK + +S +P + +F AFF R+SEAQDLL KCP ++R H DV+
Sbjct: 522 TLEDARDFLKALKGSSNNYPQPPTYVQIFKAFFAEGRYSEAQDLLYKCPIHIRRHHDVIE 581
Query: 655 LLYSKKS 661
L KK+
Sbjct: 582 LFEPKKA 588
>gi|242060055|ref|XP_002459173.1| hypothetical protein SORBIDRAFT_03g047260 [Sorghum bicolor]
gi|241931148|gb|EES04293.1| hypothetical protein SORBIDRAFT_03g047260 [Sorghum bicolor]
Length = 574
Score = 288 bits (737), Expect = 7e-75, Method: Compositional matrix adjust.
Identities = 181/544 (33%), Positives = 282/544 (51%), Gaps = 10/544 (1%)
Query: 129 THEMVLKVLKNLESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVGVH--GLVQEFWGL 186
T E VL + +L P +A F + +SS YNL LR + H + FW
Sbjct: 34 TPEAVLYDIHSLSKDPSQALAVFRRS-AAAGQPVSSAAYNLTLRTLASHPSSAQRHFWPF 92
Query: 187 VDVMKKKGYGVASHVRNKMTEKFEKEGLESDLEKLKG---IFATGSIDNSIEKVASRICK 243
+ M++ G+ V F+K L +D L F G+ + A+
Sbjct: 93 LREMQEAGHSVDQGTYLAALASFKKASLTADYASLTAHYNKFRKGANSAAAAAAAAAAEA 152
Query: 244 VVRSDIWGDDVERQLRDLNV-TFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDES 302
V D G ++ +L D+ + + V V+ +L + P KAL FFRWAE+ H
Sbjct: 153 VRDHDAAG--LDSRLADIGLLPLTETTVITVLRELREYPIKALAFFRWAEQQQGYTHSSV 210
Query: 303 SYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFA 362
+YNAMA VLGRE+ + FW ++ E+++ G ++++T +K+ F +R+MV+EAV+LYE
Sbjct: 211 AYNAMARVLGREESVPEFWDLIQEIKAAGMHVDIDTYLKLSRNFQKRHMVREAVELYELM 270
Query: 363 MACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVG 422
M KPS ++R+I + + D+ L ++VV F V T +L+ V +AL S G
Sbjct: 271 MDGPFKPSQQDGPIIIRRISLGRSPDLELVNRVVNKFEAVWGVKTKELLDGVHRALTSNG 330
Query: 423 RMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWV 482
+ E +I++ M + G + S++ + L AGK ++A + +D MEA G K W
Sbjct: 331 KFDEAAEIVQTMRDQGHQPDNVTYSQLVYGLCKAGKLEDARKVLDEMEAEGCVPDLKTWT 390
Query: 483 SLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVR 542
LI+G+C AGD+D+A F +M+EK G +D+++ CS + +A V
Sbjct: 391 LLIQGYCSAGDVDRAVQYFTEMIEK-GLDADADLLDVILKGLCSHEKVEEAYSLFVEMVD 449
Query: 543 EYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPFIKYVSKSGTSDDAI 602
+ +L+P+ T + LI +LL ++AL+LL MK FP FVDPF Y++K GT +DA
Sbjct: 450 KAELRPFQGTCQRLIGDLLRVNKLEEALALLKTMKTCKFPAFVDPFHPYIAKHGTVEDAR 509
Query: 603 AFLKGMTSKRFPSMSVVLCLFAAFFQARRHSEAQDLLSKCPRYVRNHADVLNLLYSKKSG 662
F K +T K P+ +V + + FF R+SEAQ+LL KCP ++R H V L S K
Sbjct: 510 NFFKALTVKTSPAPAVYVDVLKLFFAEGRYSEAQELLYKCPNHIRKHPHVTKLFESIKVE 569
Query: 663 GDSA 666
SA
Sbjct: 570 SASA 573
Score = 55.8 bits (133), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 65/269 (24%), Positives = 109/269 (40%), Gaps = 49/269 (18%)
Query: 118 SKQLELSGVVFTHEMVLKVLKNLESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVGVH 177
S+ ++ + T V+ VL+ L P +A FF W +++ SS YN M R++G
Sbjct: 163 SRLADIGLLPLTETTVITVLRELREYPIKALAFFRWAEQQQGYTHSSVAYNAMARVLGRE 222
Query: 178 GLVQEFWGLVDVMKKKGYGVASHVRNKMTEKFEK-----EGLESDLEKLKGIFATGSIDN 232
V EFW L+ +K G V K++ F+K E +E + G F D
Sbjct: 223 ESVPEFWDLIQEIKAAGMHVDIDTYLKLSRNFQKRHMVREAVELYELMMDGPFKPSQQDG 282
Query: 233 SIEKVASRIC-----------KVVR--SDIWG-------DDVERQLRDLNVTF--SNDLV 270
I + RI +VV +WG D V R L N F + ++V
Sbjct: 283 PI--IIRRISLGRSPDLELVNRVVNKFEAVWGVKTKELLDGVHRALTS-NGKFDEAAEIV 339
Query: 271 KFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSK 330
+ + D+ G +P D +Y+ + L + ++ KVLDEM ++
Sbjct: 340 QTMRDQ-GHQP------------------DNVTYSQLVYGLCKAGKLEDARKVLDEMEAE 380
Query: 331 GYEMEMETCVKVLGRFSERNMVKEAVDLY 359
G +++T ++ + V AV +
Sbjct: 381 GCVPDLKTWTLLIQGYCSAGDVDRAVQYF 409
>gi|255584310|ref|XP_002532891.1| hypothetical protein RCOM_0447050 [Ricinus communis]
gi|223527351|gb|EEF29496.1| hypothetical protein RCOM_0447050 [Ricinus communis]
Length = 375
Score = 270 bits (691), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 144/278 (51%), Positives = 199/278 (71%), Gaps = 23/278 (8%)
Query: 1 MRHQWRFLLFRNYPRSSLQFTGSSYYFQVPFNPNLTLHESLHTLSSLLPTSSHTFYSRFS 60
MRH WR LLFRNYPRSSL+ ++FQV + +L+ SL++L HTF +
Sbjct: 1 MRHSWRLLLFRNYPRSSLR--THQHHFQV-HSSSLSHIRSLYSL--------HTFSQQSH 49
Query: 61 RLPICYSRLINLIDPKNPNFRNPMICSYSSEPAME---QKESDFT--VVSDIFYKFSDVN 115
L ++ INL + P ++SS+ +E +KE D ++SDIF KFSDVN
Sbjct: 50 LLEFKNNKRINLN-------KGPTAYNFSSDALIESENKKEPDPQCLLISDIFTKFSDVN 102
Query: 116 DISKQLELSGVVFTHEMVLKVLKNLESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVG 175
DI+K LEL+ VV HE+VLKVL LE +PD AR+FF+WVLEK+SERLSSK YNLML+++G
Sbjct: 103 DITKDLELNNVVVDHELVLKVLNFLECNPDVARKFFDWVLEKDSERLSSKAYNLMLKVLG 162
Query: 176 VHGLVQEFWGLVDVMKKKGYGVASHVRNKMTEKFEKEGLESDLEKLKGIFATGSIDNSIE 235
+G V+EFW LV++MKKKGYGV+ R+K+ EKFEK+GL+SDLEKLK +FA+GS+D+S+E
Sbjct: 163 FNGFVEEFWDLVEIMKKKGYGVSRGTRDKVAEKFEKDGLKSDLEKLKEVFASGSVDHSLE 222
Query: 236 KVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFV 273
K+A R+ ++VR+ +WG+DVE+Q++DLN FS+D+ F
Sbjct: 223 KIALRMSRIVRNQVWGEDVEKQIKDLNAVFSSDMDGFT 260
Score = 158 bits (400), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 94/191 (49%), Positives = 117/191 (61%), Gaps = 23/191 (12%)
Query: 486 KGHCVA-GDLDKAADCFQKM-----VEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHN 539
KG+ V+ G DK A+ F+K +EK A ++D + + A+ + V N
Sbjct: 180 KGYGVSRGTRDKVAEKFEKDGLKSDLEKLKEVFASGSVD-----HSLEKIALRMSRIVRN 234
Query: 540 CVREYDLKPWHTTYEELIKNLLV-----QRGFKDALSLLCLMKDHGFPPFVDPFIKYVSK 594
V W E+ IK+L GF DAL LL LMKDHG PPF+ PFIK+VSK
Sbjct: 235 QV-------WGEDVEKQIKDLNAVFSSDMDGFTDALKLLDLMKDHGNPPFLTPFIKHVSK 287
Query: 595 SGTSDDAIAFLKGMTSKRFPSMSVVLCLFAAFFQARRHSEAQDLLSKCPRYVRNHADVLN 654
GT DDAI F++ MT+K+FPS SVVL LF AFF+A RHSEAQ LSKCP Y+RNHADVLN
Sbjct: 288 RGTGDDAIVFMRAMTTKKFPSTSVVLRLFEAFFKAGRHSEAQIFLSKCPHYIRNHADVLN 347
Query: 655 LLYSKKSGGDS 665
L YS K+G D+
Sbjct: 348 LFYSMKAGKDT 358
Score = 51.6 bits (122), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 58/239 (24%), Positives = 100/239 (41%), Gaps = 32/239 (13%)
Query: 252 DDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVL 311
+D+ + L NV ++LV V++ L P A FF W E + +YN M VL
Sbjct: 102 NDITKDLELNNVVVDHELVLKVLNFLECNPDVARKFFDWVLEKDSERLSSKAYNLMLKVL 161
Query: 312 GREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSV 371
G ++ FW +++ M+ KGY + T KV +F + + + L E + S+
Sbjct: 162 GFNGFVEEFWDLVEIMKKKGYGVSRGTRDKVAEKFEKDGLKSDLEKLKEVFASGSVDHSL 221
Query: 372 NCCTFLLRKIV--------VSKQL---------DMRLFS---KVVRVFRENGNVLTDAML 411
+ +IV V KQ+ DM F+ K++ + +++GN L
Sbjct: 222 EKIALRMSRIVRNQVWGEDVEKQIKDLNAVFSSDMDGFTDALKLLDLMKDHGN---PPFL 278
Query: 412 NSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSS----AGKKDEANEFM 466
+K + G + ++AM F ++S + RL AG+ EA F+
Sbjct: 279 TPFIKHVSKRGTGDDAIVFMRAMTTKKFPSTS-----VVLRLFEAFFKAGRHSEAQIFL 332
>gi|357131801|ref|XP_003567522.1| PREDICTED: pentatricopeptide repeat-containing protein At3g48250,
chloroplastic-like [Brachypodium distachyon]
Length = 585
Score = 260 bits (665), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 185/542 (34%), Positives = 271/542 (50%), Gaps = 12/542 (2%)
Query: 129 THEMVLKVLKNLESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQE--FWGL 186
T E VL L++L P A FF L S YNLMLR + + FW
Sbjct: 41 TTESVLYSLRSLSKDPPLALAFFRRSAAG-GHPLGSAAYNLMLRTLASRPASAQDHFWPF 99
Query: 187 VDVMKKKGYGVASHVRNKMTEKFEKEGLESDLEKLKGIFATGSIDNSIE--KVASRICKV 244
+ M+ G+ V F+K L +D L A D + S +
Sbjct: 100 LRDMEAAGHSVDQGTYLAALASFKKARLAADYASLSARLAKDRDDAAQAGGTPVSAAAEA 159
Query: 245 VRSDIWGDD--VERQLR--DLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHD 300
VR G D +E++L DL + + V V+ +L D P KAL FFRWA H
Sbjct: 160 VRGLEEGSDEALEKRLEGVDLLLPLTETTVAKVLRELRDCPVKALGFFRWAGRQKGYTHG 219
Query: 301 ESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYE 360
+YNAMA VLGRE+ + FW+++ EM++ G ++++T VK+ +F +R+M+ EAV+LYE
Sbjct: 220 SVAYNAMARVLGREESVQEFWELIQEMKADGIYLDIDTYVKLNRQFQKRHMMTEAVELYE 279
Query: 361 FAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALIS 420
M KPS LLR+I + D+ L +VVR F T + + + +AL S
Sbjct: 280 LMMDGPYKPSKQDGPVLLRRIALGPSPDLELAHRVVRKFEAVYEFKTKDVFDGIHRALTS 339
Query: 421 VGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKM 480
GR E +++++M G + S++ F L A K DEA + + ME G K
Sbjct: 340 NGRFDEAAEVMESMRSEGHQPDNITYSQLVFGLCKANKCDEARKVLVEMENEGCAPDLKT 399
Query: 481 WVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNC 540
W LI+GHC AG++DKA +M+E + A +D++V C++++ A
Sbjct: 400 WTMLIQGHCTAGEVDKALQYLTEMIENNLDADADL-LDVMVRGLCNQDKVDAAYTLFVEM 458
Query: 541 VREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPFIKYVSKSGTSDD 600
V + L PW TY+ +I LL + ++AL LL MK FPPF DPF +++ GT +D
Sbjct: 459 VDKAQLNPWQGTYKHIISELLRVKKLEEALGLLKSMKARKFPPFADPFPPNIAEYGTLED 518
Query: 601 AIAFLKGMTS--KRFPSMSVVLCLFAAFFQARRHSEAQDLLSKCPRYVRNHADVLNLLYS 658
A FLK + +PS + L +F +FF R+SEAQDLL KCP ++R H D+ L S
Sbjct: 519 AKDFLKALKGGVNSYPSHTAYLHMFKSFFAEGRYSEAQDLLYKCPIHIRRHHDITKLFES 578
Query: 659 KK 660
K
Sbjct: 579 IK 580
>gi|195616298|gb|ACG29979.1| hypothetical protein [Zea mays]
Length = 577
Score = 256 bits (654), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 176/541 (32%), Positives = 264/541 (48%), Gaps = 4/541 (0%)
Query: 128 FTHEMVLKVLKNLESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQ-EFWGL 186
T E VL + +L P +A F + + + S YNLMLR + H Q FW
Sbjct: 31 LTPEAVLYNIHSLSKDPSQALAVFRRSVAA-GQPVGSAAYNLMLRTLASHPSAQRHFWPF 89
Query: 187 VDVMKKKGYGVASHVRNKMTEKFEKEGLESDLEKLKGIFATGSIDNSIEKVASRICKVVR 246
+ M++ G+ V F+K L +D L + S
Sbjct: 90 LREMQEAGHSVDQGTYLAALASFKKASLTADYASLTAHYDKFRKGAKSATAVSAAAAEAV 149
Query: 247 SDIWGDDVERQLRDLNV-TFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYN 305
D ++ +L + + + V V+ +L + P KAL FFRWA H +YN
Sbjct: 150 RDHDAAGLDSRLSAIGLLPLTETSVTTVLRELREHPIKALAFFRWAGRQQGYTHSSVAYN 209
Query: 306 AMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMAC 365
AMA VLGRE+ + FW ++ E ++ G ++++T +K+ F R+MV+EAV+LYE M
Sbjct: 210 AMARVLGREESVPEFWDLIRETKAAGMHVDIDTYLKLSRNFQRRHMVREAVELYELMMDG 269
Query: 366 KNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMG 425
KP+ ++R+I + D+ L ++VV F V T +L+ V +AL G
Sbjct: 270 PFKPAQQDGPIIIRRISLGPSPDLELVNRVVNKFEAVWGVKTKELLDGVHRALTRNGMFD 329
Query: 426 ECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLI 485
E +I++ M+ G + S++ + L A K ++A + +D MEA G K W LI
Sbjct: 330 EAAEIVQTMKAQGHQPDNVTYSQLVYGLCKADKLEDARKVLDEMEAEGCVPDLKTWTLLI 389
Query: 486 KGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYD 545
G C+AGD+D+A +M+EK G +D+++ CS + +A F V + +
Sbjct: 390 HGCCLAGDVDRAVQYLTEMIEK-GLDADANLLDVILKGLCSHEKVEEAYSFFIEMVNKTE 448
Query: 546 LKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPFIKYVSKSGTSDDAIAFL 605
L+PW T + LI +LL ++ALSLL MK FPPF DPF Y++K GT +DA F
Sbjct: 449 LRPWQGTCQHLINDLLRVNKLEEALSLLKTMKTCKFPPFADPFPPYIAKYGTVEDARNFF 508
Query: 606 KGMTSKRFPSMSVVLCLFAAFFQARRHSEAQDLLSKCPRYVRNHADVLNLLYSKKSGGDS 665
K MT P L + FF R+SEAQDLL CP ++R H DV+ L S K S
Sbjct: 509 KAMTVNTSPEPVAYLHVLKLFFAEGRYSEAQDLLYGCPNHIRKHPDVIKLFGSIKVESAS 568
Query: 666 A 666
A
Sbjct: 569 A 569
>gi|413951210|gb|AFW83859.1| hypothetical protein ZEAMMB73_953172 [Zea mays]
Length = 598
Score = 255 bits (651), Expect = 7e-65, Method: Compositional matrix adjust.
Identities = 177/540 (32%), Positives = 264/540 (48%), Gaps = 6/540 (1%)
Query: 128 FTHEMVLKVLKNLESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQ-EFWGL 186
+ E VL + +L P +A F + + + S YNLMLR + H Q FW
Sbjct: 56 LSPEAVLYNIHSLSKDPSQALAVFRRSVAA-GQPVGSAAYNLMLRTLASHPSAQRHFWPF 114
Query: 187 VDVMKKKGYGVASHVRNKMTEKFEKEGLESDLEKLKGIFATGSIDNSIEKVASRICKVVR 246
+ M++ G+ V F+K L +D L + + + V
Sbjct: 115 LREMQEAGHSVDQGTYLAALASFKKASLTADYASLTAHY--DKFRKGAKSATAAAEAVRD 172
Query: 247 SDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNA 306
D G D L + + V V+ +L + P KAL FFRWA H +YNA
Sbjct: 173 HDAAGLDSRLSAIGL-LPLTETSVTTVLRELREHPIKALAFFRWAGRQQGYTHSSVAYNA 231
Query: 307 MASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACK 366
MA VLGRE+ + FW ++ E ++ G ++++T +K+ F R+MV+EAV+LYE M
Sbjct: 232 MARVLGREESVPEFWDLIRETKAAGMHVDIDTYLKLSRNFQRRHMVREAVELYELMMDGP 291
Query: 367 NKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGE 426
KP+ ++R+I + D+ L ++VV F V T +L+ V +AL G E
Sbjct: 292 FKPAQQDGPIIIRRISMGPSPDLELVNRVVNKFEAVWGVKTKELLDGVHRALTRNGMFDE 351
Query: 427 CNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIK 486
+I++ M+ G + S++ + L A K ++A + +D MEA G K W LI
Sbjct: 352 AAEIVQTMKAQGHQPDNVTYSQLVYGLCKADKLEDARKVLDEMEAEGCVPDLKTWTLLIH 411
Query: 487 GHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDL 546
G C+AGD+D+A +M+EK G +D+++ CS + +A F V + +L
Sbjct: 412 GCCLAGDVDRAVQYLTEMIEK-GLDADANLLDVILKGLCSHEKVEEAYSFFIEMVDKTEL 470
Query: 547 KPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPFIKYVSKSGTSDDAIAFLK 606
+PW T + LI +LL ++ALSLL MK FPPF DPF Y++K GT +DA F K
Sbjct: 471 RPWQGTCQHLINDLLRVNKLEEALSLLKTMKTCKFPPFADPFPPYIAKYGTVEDARNFFK 530
Query: 607 GMTSKRFPSMSVVLCLFAAFFQARRHSEAQDLLSKCPRYVRNHADVLNLLYSKKSGGDSA 666
MT P L + FF R+SEAQDLL CP ++R H DV+ L S K SA
Sbjct: 531 AMTVNTSPEPVAYLHVLKLFFAEGRYSEAQDLLYGCPNHIRKHPDVIKLFGSIKVESASA 590
Score = 52.4 bits (124), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 57/241 (23%), Positives = 97/241 (40%), Gaps = 24/241 (9%)
Query: 113 DVNDISKQLELSGVV-FTHEMVLKVLKNLESSPDEARRFFNWVLEKESERLSSKTYNLML 171
D + +L G++ T V VL+ L P +A FF W ++ SS YN M
Sbjct: 174 DAAGLDSRLSAIGLLPLTETSVTTVLRELREHPIKALAFFRWAGRQQGYTHSSVAYNAMA 233
Query: 172 RIVGVHGLVQEFWGLVDVMKKKGYGVASHVRNKMTEKFE-----KEGLESDLEKLKGIFA 226
R++G V EFW L+ K G V K++ F+ +E +E + G F
Sbjct: 234 RVLGREESVPEFWDLIRETKAAGMHVDIDTYLKLSRNFQRRHMVREAVELYELMMDGPFK 293
Query: 227 TGSIDNSIEKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALI 286
D I ++R G + +L + V + +L D +AL
Sbjct: 294 PAQQDGPI---------IIRRISMGPSPDLELVNRVVNKFEAVWGVKTKELLDGVHRALT 344
Query: 287 FFRWAEESGFV---------KHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEME 337
+E+ + + D +Y+ + L + D ++ KVLDEM ++G +++
Sbjct: 345 RNGMFDEAAEIVQTMKAQGHQPDNVTYSQLVYGLCKADKLEDARKVLDEMEAEGCVPDLK 404
Query: 338 T 338
T
Sbjct: 405 T 405
>gi|212722066|ref|NP_001132329.1| uncharacterized protein LOC100193771 [Zea mays]
gi|194694094|gb|ACF81131.1| unknown [Zea mays]
Length = 502
Score = 242 bits (617), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 166/498 (33%), Positives = 246/498 (49%), Gaps = 5/498 (1%)
Query: 170 MLRIVGVHGLVQ-EFWGLVDVMKKKGYGVASHVRNKMTEKFEKEGLESDLEKLKGIFATG 228
MLR + H Q FW + M++ G+ V F+K L +D L +
Sbjct: 1 MLRTLASHPSAQRHFWPFLREMQEAGHSVDQGTYLAALASFKKASLTADYASLTAHY--D 58
Query: 229 SIDNSIEKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFF 288
+ + V D G D L + + V V+ +L + P KAL FF
Sbjct: 59 KFRKGAKSATAAAEAVRDHDAAGLDSRLSAIGL-LPLTETSVTTVLRELREHPIKALAFF 117
Query: 289 RWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSE 348
RWA H +YNAMA VLGRE+ + FW ++ E ++ G ++++T +K+ F
Sbjct: 118 RWAGRQQGYTHSSVAYNAMARVLGREESVPEFWDLIRETKAAGMHVDIDTYLKLSRNFQR 177
Query: 349 RNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTD 408
R+MV+EAV+LYE M KP+ ++R+I + D+ L ++VV F V T
Sbjct: 178 RHMVREAVELYELMMDGPFKPAQQDGPIIIRRISMGPSPDLELVNRVVNKFEAVWGVKTK 237
Query: 409 AMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDH 468
+L+ V +AL G E +I++ M+ G + S++ + L A K ++A + +D
Sbjct: 238 ELLDGVHRALTRNGMFDEAAEIVQTMKAQGHQPDNVTYSQLVYGLCKADKLEDARKVLDE 297
Query: 469 MEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKN 528
MEA G K W LI G C+AGD+D+A +M+EK G +D+++ CS
Sbjct: 298 MEAEGCVPDLKTWTLLIHGCCLAGDVDRAVQYLTEMIEK-GLDADANLLDVILKGLCSHE 356
Query: 529 RAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPF 588
+ +A F V + +L+PW T + LI +LL ++ALSLL MK FPPF DPF
Sbjct: 357 KVEEAYSFFIEMVDKTELRPWQGTCQHLINDLLRVNKLEEALSLLKTMKTCKFPPFADPF 416
Query: 589 IKYVSKSGTSDDAIAFLKGMTSKRFPSMSVVLCLFAAFFQARRHSEAQDLLSKCPRYVRN 648
Y++K GT +DA F K MT P L + FF R+SEAQDLL CP ++R
Sbjct: 417 PPYIAKYGTVEDARNFFKAMTVNTSPEPVAYLHVLKLFFAEGRYSEAQDLLYGCPNHIRK 476
Query: 649 HADVLNLLYSKKSGGDSA 666
H DV+ L S K SA
Sbjct: 477 HPDVIKLFGSIKVESASA 494
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 59/237 (24%), Positives = 98/237 (41%), Gaps = 16/237 (6%)
Query: 113 DVNDISKQLELSGVV-FTHEMVLKVLKNLESSPDEARRFFNWVLEKESERLSSKTYNLML 171
D + +L G++ T V VL+ L P +A FF W ++ SS YN M
Sbjct: 78 DAAGLDSRLSAIGLLPLTETSVTTVLRELREHPIKALAFFRWAGRQQGYTHSSVAYNAMA 137
Query: 172 RIVGVHGLVQEFWGLVDVMKKKGYGVASHVRNKMTEKFE-----KEGLESDLEKLKGIFA 226
R++G V EFW L+ K G V K++ F+ +E +E + G F
Sbjct: 138 RVLGREESVPEFWDLIRETKAAGMHVDIDTYLKLSRNFQRRHMVREAVELYELMMDGPFK 197
Query: 227 TGSIDNSIEKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALI 286
D I + RI D+ + V R + + K ++D + + +
Sbjct: 198 PAQQDGPI--IIRRISMGPSPDL--ELVNRVVNKFEAVWGVK-TKELLDGVHRALTRNGM 252
Query: 287 FFRWAEESGFVKH-----DESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMET 338
F AE +K D +Y+ + L + D ++ KVLDEM ++G +++T
Sbjct: 253 FDEAAEIVQTMKAQGHQPDNVTYSQLVYGLCKADKLEDARKVLDEMEAEGCVPDLKT 309
>gi|297841313|ref|XP_002888538.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297334379|gb|EFH64797.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 178
Score = 225 bits (574), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 105/177 (59%), Positives = 140/177 (79%)
Query: 150 FFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRNKMTEKF 209
FF W+ E E LSSK YN+MLRI+GV+GLV EFWGLVDVMKKKG+G++++VR+K+ EKF
Sbjct: 1 FFQWIKEASPEELSSKNYNMMLRILGVNGLVDEFWGLVDVMKKKGHGLSANVRDKVGEKF 60
Query: 210 EKEGLESDLEKLKGIFATGSIDNSIEKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDL 269
+K+GLESDL +L+ +FA+ +DNS E V R+CK+V + WGDDVE+++RDLNV F +DL
Sbjct: 61 QKDGLESDLVRLRKLFASDCLDNSAENVCDRVCKIVMKEEWGDDVEKRVRDLNVEFKSDL 120
Query: 270 VKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDE 326
VK +V+ L EP+KAL+FFRW +ESG KHDE +YNAMA VLG+ +DRF ++ E
Sbjct: 121 VKMIVESLDVEPRKALLFFRWIDESGLFKHDEKTYNAMAKVLGKVKFLDRFQNIVVE 177
Score = 47.0 bits (110), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 45/89 (50%), Gaps = 1/89 (1%)
Query: 287 FFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRF 346
FF+W +E+ + +YN M +LG +D FW ++D M+ KG+ + KV +F
Sbjct: 1 FFQWIKEASPEELSSKNYNMMLRILGVNGLVDEFWGLVDVMKKKGHGLSANVRDKVGEKF 60
Query: 347 SERNMVKEAVDLYE-FAMACKNKPSVNCC 374
+ + + V L + FA C + + N C
Sbjct: 61 QKDGLESDLVRLRKLFASDCLDNSAENVC 89
>gi|297801214|ref|XP_002868491.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297314327|gb|EFH44750.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 161
Score = 209 bits (532), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 97/159 (61%), Positives = 128/159 (80%)
Query: 150 FFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRNKMTEKF 209
FF W+ E E LSSK YN+MLRI+GV+GLV EFWGLVDVMKKKG+G++++VR+K+ EKF
Sbjct: 2 FFQWIKEASPEELSSKNYNMMLRILGVNGLVDEFWGLVDVMKKKGHGLSANVRDKVGEKF 61
Query: 210 EKEGLESDLEKLKGIFATGSIDNSIEKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDL 269
+K+GLESDL +L+ +FA+ +DNS E V R+CK+V + GDDVE+++RDLNV F +DL
Sbjct: 62 QKDGLESDLVRLRKLFASDCLDNSAENVCDRVCKIVMKEECGDDVEKRVRDLNVEFKSDL 121
Query: 270 VKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMA 308
VK +V+ L EP+KAL+FFRW +ESG KHDE +YNAMA
Sbjct: 122 VKMIVESLDVEPRKALLFFRWIDESGLFKHDEKTYNAMA 160
Score = 47.4 bits (111), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 46/90 (51%), Gaps = 1/90 (1%)
Query: 286 IFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGR 345
+FF+W +E+ + +YN M +LG +D FW ++D M+ KG+ + KV +
Sbjct: 1 MFFQWIKEASPEELSSKNYNMMLRILGVNGLVDEFWGLVDVMKKKGHGLSANVRDKVGEK 60
Query: 346 FSERNMVKEAVDLYE-FAMACKNKPSVNCC 374
F + + + V L + FA C + + N C
Sbjct: 61 FQKDGLESDLVRLRKLFASDCLDNSAENVC 90
>gi|388505814|gb|AFK40973.1| unknown [Medicago truncatula]
Length = 231
Score = 177 bits (449), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 97/230 (42%), Positives = 145/230 (63%), Gaps = 23/230 (10%)
Query: 48 LPTSSHTFYSRFSRLPI----CYSRLINLIDPKNPNFRNPMICSYSSEPAMEQKESDFTV 103
+P SHT S FS P+ YS+ + NPNFR+ +SSEP + Q D V
Sbjct: 18 IPIQSHTLRS-FSSTPLRFNTNYSKFL-----INPNFRH-----FSSEPVIPQPNPDHIV 66
Query: 104 VSDIFYKFSDVNDISKQLELSGVVFTHEMVLKVLKNLESSPDEARRFFNWVLEKESERLS 163
+ D+F K D+N+++K L+L H+ V VL+ +S D ARR F WV E E+LS
Sbjct: 67 IVDLFSKSIDLNEVNKHLDL----INHDAVNAVLRKFDSDLDSARRLFKWVSENCPEKLS 122
Query: 164 SKTYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRNKMTEKFEKEGLESDLEKLKG 223
SK+YN ML ++G++G V EFW L+ VM+KKG+GVA V+++M E FEK G+ D KLK
Sbjct: 123 SKSYNQMLGVLGINGAVDEFWDLIVVMRKKGFGVAKWVKDRMLEYFEKGGMNGDAVKLKE 182
Query: 224 IFATGSIDNSIEKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFV 273
+F +++E++ + +C++VR ++W D+VE+++RDLNV FS++ V FV
Sbjct: 183 LFDK----DTVERIFTSLCRIVRKNVWSDEVEKEIRDLNVGFSSESVNFV 228
Score = 47.8 bits (112), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 45/96 (46%)
Query: 266 SNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLD 325
++D V V+ K + A F+W E+ K SYN M VLG +D FW ++
Sbjct: 88 NHDAVNAVLRKFDSDLDSARRLFKWVSENCPEKLSSKSYNQMLGVLGINGAVDEFWDLIV 147
Query: 326 EMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEF 361
MR KG+ + ++L F + M +AV L E
Sbjct: 148 VMRKKGFGVAKWVKDRMLEYFEKGGMNGDAVKLKEL 183
>gi|357494383|ref|XP_003617480.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355518815|gb|AET00439.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 502
Score = 174 bits (440), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 134/457 (29%), Positives = 214/457 (46%), Gaps = 75/457 (16%)
Query: 209 FEKEG-LESDLEKLKGIFATGSIDNSIEKVASRICKVVRSDIWGDD--VERQLRDLNVT- 264
FEK+ + SD L ++ +++++ V +++ ++ W DD VE QL ++ +
Sbjct: 105 FEKDKKMISDGLALSHFYSEMLQESTMQSVVTKVVDIILGPDWDDDDKVENQLANVRIQQ 164
Query: 265 FSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVL 324
++D V V++ L + P KA FF W + +H+ +YN +A VL + D I+ FW +
Sbjct: 165 LTDDFVIRVLEGLQNRPLKAYKFFHWVGKQSGYQHNTVTYNYVARVLAKMDSIEEFWSI- 223
Query: 325 DEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVS 384
+EM+S G+E+++ T +K+ + E M+ L+E M KPSV C LL+ I S
Sbjct: 224 EEMKSVGHELDLNTSIKISRQLQENRMMD---GLHEHMMDSSYKPSVLDCIMLLKNIAES 280
Query: 385 KQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSN 444
+ + LF +V + + +LK+ S G+ E I+K M G+
Sbjct: 281 DEPGLDLFFRV-------------EVYDGILKSFTSAGKFDEAQIIVKTMTNAGYKPHKL 327
Query: 445 MKSKIAFRLSSAGKKDEANEFMDHMEASGS--------DVGD----KMWVSLIKGHCVAG 492
++IA L + +EA++ +D M+A G V D K W LIKG+C AG
Sbjct: 328 THNEIASGLCKLRRFEEASKVIDEMQACGCFTIRGVYMMVNDYEVIKTWKILIKGYCDAG 387
Query: 493 DLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTT 552
+LDKA KM+E+ + AG DL
Sbjct: 388 ELDKALLSLAKMIEQ---NLAGVDDDL--------------------------------- 411
Query: 553 YEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPFIKYVSKSGTSDDAIAFLKGMTSKR 612
+E L+ LL Q A L + V F +Y+SK GT +DA FLK ++
Sbjct: 412 FEVLVDALLTQGRIDGAYKLFLKLTG------VRKFEEYISKFGTMEDAAKFLKVLSKNN 465
Query: 613 FPSMSVVLCLFAAFFQARRHSEAQDLLSKCPRYVRNH 649
+PS V L +F + FQ R SEA+ LL+KCP ++R
Sbjct: 466 YPSHKVYLQIFESLFQEGRLSEAKYLLNKCPHHIRKQ 502
Score = 52.8 bits (125), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 62/304 (20%), Positives = 133/304 (43%), Gaps = 36/304 (11%)
Query: 128 FTHEMVLKVLKNLESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLV 187
T + V++VL+ L++ P +A +FF+WV ++ + ++ TYN + R++ ++EFW +
Sbjct: 165 LTDDFVIRVLEGLQNRPLKAYKFFHWVGKQSGYQHNTVTYNYVARVLAKMDSIEEFWS-I 223
Query: 188 DVMKKKGYGVASHVRNKMTEKFEKEGLESDLEKLKGIFATGSIDNSIEKVASRICKVVRS 247
+ MK G+ + + K++ + ++ + ++ L S S+ + + S
Sbjct: 224 EEMKSVGHELDLNTSIKISRQLQENRM---MDGLHEHMMDSSYKPSVLDCIMLLKNIAES 280
Query: 248 DIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAM 307
D G D+ ++ + L F DE A I + +G+ H + ++N +
Sbjct: 281 DEPGLDLFFRVE----VYDGILKSFTSAGKFDE---AQIIVKTMTNAGYKPH-KLTHNEI 332
Query: 308 ASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKN 367
AS L + + KV+DEM++ G C + G + M +
Sbjct: 333 ASGLCKLRRFEEASKVIDEMQACG-------CFTIRGVY----------------MMVND 369
Query: 368 KPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGEC 427
+ L++ + +LD L S + ++ +N + D + ++ AL++ GR+
Sbjct: 370 YEVIKTWKILIKGYCDAGELDKALLS-LAKMIEQNLAGVDDDLFEVLVDALLTQGRIDGA 428
Query: 428 NKIL 431
K+
Sbjct: 429 YKLF 432
>gi|449432854|ref|XP_004134213.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g06920-like [Cucumis sativus]
Length = 904
Score = 97.1 bits (240), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 99/440 (22%), Positives = 185/440 (42%), Gaps = 41/440 (9%)
Query: 236 KVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESG 295
+V +C+++ + WG VE +L +L++ + +LV V+ +L D A+ +FRWAE
Sbjct: 66 QVIDSVCQILETGPWGSSVENRLAELDLNPNPELVIGVLRRLKD-VNNAVNYFRWAERLT 124
Query: 296 FVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEA 355
H +YN++ V+ R + ++L+EM G+ TC++++ F + ++EA
Sbjct: 125 DRAHCREAYNSLLMVMARTRKFNCLEQILEEMSIAGFGPSNNTCIEIVLSFIKSRKLREA 184
Query: 356 VDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVL 415
+ K +P+ + T L+ + S+ D L + + +E G + + +++
Sbjct: 185 FTFIQTMRKLKFRPAFSAYTNLIGALSTSRDSDCML--TLFQQMQELGYAVNVHLFTTLI 242
Query: 416 KALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSD 475
+ GR+ +L M+ + + AGK D A +F M+A+G
Sbjct: 243 RVFAREGRVDAALSLLDEMKSNSLEPDVVLYNVCIDCFGKAGKVDMAWKFFHEMKANGLV 302
Query: 476 VGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACK 535
+ D + S+I C A L++A + F+ M + + A YA + ++ Y + DA
Sbjct: 303 LDDVTYTSMIGVLCKADRLNEAVELFEHMDQNKQVPCA-YAYNTMIMGYGMAGKFEDAYS 361
Query: 536 FV--------------HNCV-------------------REYDLKPWHTTYEELIKNLLV 562
+ +NC+ + D P +TY +I L
Sbjct: 362 LLERQRRKGCIPSVVSYNCILSCLGRKGQVDEALKKFEEMKKDAIPNLSTYNIMIDMLCK 421
Query: 563 QRGFKDALSLLCLMKDHGFPP---FVDPFIKYVSKSGTSDDAIAFLKGMTSKRFPSMSVV 619
+ AL + MKD G P V+ + + K+ DDA + +G+ K +V
Sbjct: 422 AGKLETALVVRDAMKDAGLFPNVITVNIMVDRLCKAQRLDDACSIFEGLDHKTCRPDAVT 481
Query: 620 LC-LFAAFFQARRHSEAQDL 638
C L + R EA L
Sbjct: 482 YCSLIEGLGRHGRVDEAYKL 501
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 58/269 (21%), Positives = 108/269 (40%), Gaps = 11/269 (4%)
Query: 398 VFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAG 457
+E G VL N+V+ G++ + ++L+ M+ G + + L+
Sbjct: 609 TMKEQGCVLDTRAYNTVIDGFCKSGKVNKAYQLLEEMKTKGHEPTVVTYGSVIDGLAKID 668
Query: 458 KKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAI 517
+ DEA + ++ G ++ ++ SLI G G +D+A +++++K G + Y
Sbjct: 669 RLDEAYMLFEEAKSKGIELNVVIYSSLIDGFGKVGRIDEAYLIMEELMQK-GLTPNVYTW 727
Query: 518 DLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMK 577
+ L++ K I +++ P + TY LI L R F A M+
Sbjct: 728 NCLLDALV-KAEEISEALVCFQSMKDLKCTPNYITYSILIHGLCKIRKFNKAFVFWQEMQ 786
Query: 578 DHGFPPFVDPFIKYVS---KSGTSDDAIAFLKGMTSKRFPSMSVVL-CLFAAFFQARRHS 633
GF P V + +S K+G +A + K + S + + A R S
Sbjct: 787 KQGFKPNVFTYTTMISGLAKAGNIVEADTLFEKFKEKGGVADSAIYNAIIEGLSNANRAS 846
Query: 634 EAQDL-----LSKCPRYVRNHADVLNLLY 657
+A L L C Y + +L+ L+
Sbjct: 847 DAYRLFEEARLKGCSIYTKTCVVLLDSLH 875
Score = 43.9 bits (102), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 58/256 (22%), Positives = 110/256 (42%), Gaps = 22/256 (8%)
Query: 287 FFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRF 346
F +E G V D +YN + + +++ +++L+EM++KG+E + T V+
Sbjct: 606 LFYTMKEQGCV-LDTRAYNTVIDGFCKSGKVNKAYQLLEEMKTKGHEPTVVTYGSVIDGL 664
Query: 347 SERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRV-------- 398
++ + + EA L+E A K+K L ++ S +D F KV R+
Sbjct: 665 AKIDRLDEAYMLFEEA---KSKG------IELNVVIYSSLIDG--FGKVGRIDEAYLIME 713
Query: 399 -FRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAG 457
+ G N +L AL+ + E ++M++ + S + L
Sbjct: 714 ELMQKGLTPNVYTWNCLLDALVKAEEISEALVCFQSMKDLKCTPNYITYSILIHGLCKIR 773
Query: 458 KKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAI 517
K ++A F M+ G + ++I G AG++ +A F+K EK G + +
Sbjct: 774 KFNKAFVFWQEMQKQGFKPNVFTYTTMISGLAKAGNIVEADTLFEKFKEKGGVADSAI-Y 832
Query: 518 DLLVNTYCSKNRAIDA 533
+ ++ + NRA DA
Sbjct: 833 NAIIEGLSNANRASDA 848
Score = 41.6 bits (96), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 47/205 (22%), Positives = 90/205 (43%), Gaps = 21/205 (10%)
Query: 317 IDRFWKV--LDEMRSKGYEMEMETC----------VKVLGRFSERNMVKEAVDLYEFAMA 364
+DR K LD+ S ++ +TC ++ LGR V EA LYE +
Sbjct: 451 VDRLCKAQRLDDACSIFEGLDHKTCRPDAVTYCSLIEGLGRHGR---VDEAYKLYEQMLD 507
Query: 365 CKNKPSVNCCTFLLRKI--VVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVG 422
P+ T L+R K+ +++++++R+ +L + ++ V KA G
Sbjct: 508 ANQIPNAVVYTSLIRNFFKCGRKEDGHKIYNEMLRLGCSPDLLLLNTYMDCVFKA----G 563
Query: 423 RMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWV 482
+ + + + ++ GFI + + + L AG EA E M+ G + + +
Sbjct: 564 EIEKGRALFQEIKNLGFIPDARSYTILIHGLVKAGFAHEAYELFYTMKEQGCVLDTRAYN 623
Query: 483 SLIKGHCVAGDLDKAADCFQKMVEK 507
++I G C +G ++KA ++M K
Sbjct: 624 TVIDGFCKSGKVNKAYQLLEEMKTK 648
>gi|449513353|ref|XP_004164304.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At3g06920-like [Cucumis sativus]
Length = 904
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 98/440 (22%), Positives = 184/440 (41%), Gaps = 41/440 (9%)
Query: 236 KVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESG 295
+V +C+++ + WG VE +L +L++ + +LV V+ +L D A+ +FRWAE
Sbjct: 66 QVIDSVCQILETGPWGSSVENRLAELDLNPNPELVIGVLRRLKD-VNNAVNYFRWAERLT 124
Query: 296 FVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEA 355
H +YN++ V+ R + ++L+EM G+ TC++++ F + ++EA
Sbjct: 125 DRAHCREAYNSLLMVMARTRKFNCLEQILEEMSIAGFGPSNNTCIEIVLSFIKSRKLREA 184
Query: 356 VDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVL 415
+ K +P+ + T L+ + S+ D L + + +E G + + +++
Sbjct: 185 FTFIQTMRKLKFRPAFSAYTNLIGALSTSRDSDCML--TLFQQMQELGYAVNVHLFTTLI 242
Query: 416 KALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSD 475
+ GR+ +L M+ + + AGK D A + M+A+G
Sbjct: 243 RVFAREGRVDAALSLLDEMKSNSLEPDVVLYNVCIDCFGKAGKVDMAWKXFHEMKANGLV 302
Query: 476 VGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACK 535
+ D + S+I C A L++A + F+ M + + A YA + ++ Y + DA
Sbjct: 303 LDDVTYTSMIGVLCKADRLNEAVELFEHMDQNKQVPCA-YAYNTMIMGYGMAGKFEDAYS 361
Query: 536 FV--------------HNCV-------------------REYDLKPWHTTYEELIKNLLV 562
+ +NC+ + D P +TY +I L
Sbjct: 362 LLERQRRKGCIPSVVSYNCILSCLGRKGQVDEALKKFEEMKKDAIPNLSTYNIMIDMLCK 421
Query: 563 QRGFKDALSLLCLMKDHGFPP---FVDPFIKYVSKSGTSDDAIAFLKGMTSKRFPSMSVV 619
+ AL + MKD G P V+ + + K+ DDA + +G+ K +V
Sbjct: 422 AGKLETALVVRDAMKDAGLFPNVITVNIMVDRLCKAQRLDDACSIFEGLDHKTCRPDAVT 481
Query: 620 LC-LFAAFFQARRHSEAQDL 638
C L + R EA L
Sbjct: 482 YCSLIEGLGRHGRVDEAYKL 501
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 58/269 (21%), Positives = 108/269 (40%), Gaps = 11/269 (4%)
Query: 398 VFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAG 457
+E G VL N+V+ G++ + ++L+ M+ G + + L+
Sbjct: 609 TMKEQGCVLDTRAYNTVIDGFCKSGKVNKAYQLLEEMKTKGHEPTVVTYGSVIDGLAKID 668
Query: 458 KKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAI 517
+ DEA + ++ G ++ ++ SLI G G +D+A +++++K G + Y
Sbjct: 669 RLDEAYMLFEEAKSKGIELNVVIYSSLIDGFGKVGRIDEAYLIMEELMQK-GLTPNVYTW 727
Query: 518 DLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMK 577
+ L++ K I +++ P + TY LI L R F A M+
Sbjct: 728 NCLLDALV-KAEEISEALVCFQSMKDLKCTPNYITYSILIHGLCKIRKFNKAFVFWQEMQ 786
Query: 578 DHGFPPFVDPFIKYVS---KSGTSDDAIAFLKGMTSKRFPSMSVVL-CLFAAFFQARRHS 633
GF P V + +S K+G +A + K + S + + A R S
Sbjct: 787 KQGFKPNVFTYTTMISGLAKAGNIVEADTLFEKFKEKGGVADSAIYNAIIEGLSNANRAS 846
Query: 634 EAQDL-----LSKCPRYVRNHADVLNLLY 657
+A L L C Y + +L+ L+
Sbjct: 847 DAYRLFEEARLKGCSIYTKTCVVLLDSLH 875
Score = 43.5 bits (101), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 58/256 (22%), Positives = 110/256 (42%), Gaps = 22/256 (8%)
Query: 287 FFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRF 346
F +E G V D +YN + + +++ +++L+EM++KG+E + T V+
Sbjct: 606 LFYTMKEQGCV-LDTRAYNTVIDGFCKSGKVNKAYQLLEEMKTKGHEPTVVTYGSVIDGL 664
Query: 347 SERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRV-------- 398
++ + + EA L+E A K+K L ++ S +D F KV R+
Sbjct: 665 AKIDRLDEAYMLFEEA---KSKG------IELNVVIYSSLIDG--FGKVGRIDEAYLIME 713
Query: 399 -FRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAG 457
+ G N +L AL+ + E ++M++ + S + L
Sbjct: 714 ELMQKGLTPNVYTWNCLLDALVKAEEISEALVCFQSMKDLKCTPNYITYSILIHGLCKIR 773
Query: 458 KKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAI 517
K ++A F M+ G + ++I G AG++ +A F+K EK G + +
Sbjct: 774 KFNKAFVFWQEMQKQGFKPNVFTYTTMISGLAKAGNIVEADTLFEKFKEKGGVADSAI-Y 832
Query: 518 DLLVNTYCSKNRAIDA 533
+ ++ + NRA DA
Sbjct: 833 NAIIEGLSNANRASDA 848
Score = 41.6 bits (96), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 47/205 (22%), Positives = 90/205 (43%), Gaps = 21/205 (10%)
Query: 317 IDRFWKV--LDEMRSKGYEMEMETC----------VKVLGRFSERNMVKEAVDLYEFAMA 364
+DR K LD+ S ++ +TC ++ LGR V EA LYE +
Sbjct: 451 VDRLCKAQRLDDACSIFEGLDHKTCRPDAVTYCSLIEGLGRHGR---VDEAYKLYEQMLD 507
Query: 365 CKNKPSVNCCTFLLRKI--VVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVG 422
P+ T L+R K+ +++++++R+ +L + ++ V KA G
Sbjct: 508 ANQIPNAVVYTSLIRNFFKCGRKEDGHKIYNEMLRLGCSPDLLLLNTYMDCVFKA----G 563
Query: 423 RMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWV 482
+ + + + ++ GFI + + + L AG EA E M+ G + + +
Sbjct: 564 EIEKGRALFQEIKNLGFIPDARSYTILIHGLVKAGFAHEAYELFYTMKEQGCVLDTRAYN 623
Query: 483 SLIKGHCVAGDLDKAADCFQKMVEK 507
++I G C +G ++KA ++M K
Sbjct: 624 TVIDGFCKSGKVNKAYQLLEEMKTK 648
>gi|357494939|ref|XP_003617758.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355519093|gb|AET00717.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 906
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 97/425 (22%), Positives = 176/425 (41%), Gaps = 40/425 (9%)
Query: 233 SIEKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAE 292
+ K +C V+ + +WG DVE L + +++ V+ +L D A +FRW E
Sbjct: 66 GMRKTVYDLCGVLENGLWGPDVEEALNVFDEMSQPEVIVGVMKRLKD-VNVAFQYFRWVE 124
Query: 293 ESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMV 352
H YNA V+ R +D ++L+EM G+ + V+++ F + + +
Sbjct: 125 RKTQQAHCPEVYNAFLMVMARTRNLDYLEQILEEMSVAGFGLSNHVSVELVASFVKSHKL 184
Query: 353 KEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLD-----------------MRLFSKV 395
KEA + E K +P+ + T L+ + + + D + LF+ +
Sbjct: 185 KEAFGVIEMMRKFKFRPAFSAYTTLIGALSAANRPDPMLTLFHQMQEIGYEANVHLFTTL 244
Query: 396 VRVFRENGNV-----LTDAM-----------LNSVLKALISVGRMGECNKILKAMEEGGF 439
VRVF G + L D M N + VG++ K M+ G
Sbjct: 245 VRVFAREGRIDAALSLLDEMKSNSFTADLVLYNVCIDCFGKVGKVDMAWKFFHEMKAQGL 304
Query: 440 IASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAAD 499
+ + + L A + DEA E + ++ + S + ++I G+ AG D+A
Sbjct: 305 VPDDVTYTTLIGVLCKARRLDEAVELFEELDLNRSVPCVYAYNTMIMGYGSAGKFDEAYS 364
Query: 500 CFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKN 559
++ +++G + A + ++ K + +A + +H+ +R+ D P TTY LI
Sbjct: 365 LLERQ-KRKGCIPSVIAYNCILTCLGRKGKVEEALR-IHDEMRQ-DAAPNLTTYNILIDM 421
Query: 560 LLVQRGFKDALSLLCLMKDHGFPP---FVDPFIKYVSKSGTSDDAIAFLKGMTSKRFPSM 616
L + AL + MK+ G P V+ I + K+ D+A + G+ K
Sbjct: 422 LCKAGELEAALKVQDTMKEAGLFPNIMTVNIMIDRLCKAQKLDEACSIFLGLDHKVCSPD 481
Query: 617 SVVLC 621
S C
Sbjct: 482 SRTFC 486
Score = 47.0 bits (110), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 40/185 (21%), Positives = 77/185 (41%), Gaps = 2/185 (1%)
Query: 399 FRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGK 458
+E G L N+V+ G++ + ++L+ M+ G + + L+ +
Sbjct: 613 MKEQGLHLDVLAYNTVIDGFCKSGKVDKAYQLLEEMKTKGLQPTVVTYGSVVDGLAKIDR 672
Query: 459 KDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAID 518
DEA + ++ G D+ ++ SLI G G +D+A +++++K G + Y +
Sbjct: 673 LDEAYMLFEEAKSIGVDLNVVIYSSLIDGFGKVGRIDEAYLILEELMQK-GLTPNSYTWN 731
Query: 519 LLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKD 578
L++ K ID + ++ P TY +I L + R F A M+
Sbjct: 732 CLLDALV-KAEEIDEAQVCFQNMKNLKCSPNAMTYSIMINGLCMIRKFNKAFVFWQEMQK 790
Query: 579 HGFPP 583
G P
Sbjct: 791 QGLKP 795
>gi|225442663|ref|XP_002279821.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g16010-like [Vitis vinifera]
Length = 725
Score = 92.4 bits (228), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 104/425 (24%), Positives = 177/425 (41%), Gaps = 31/425 (7%)
Query: 233 SIEKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAE 292
S+ + R ++++ WG D E+ L L + + LV+ V+ K+ E + FF+WA
Sbjct: 57 SVRTLDERFIRILKIFKWGPDAEKALEVLKLKVDHRLVREVL-KIDVEIHVKIQFFKWAG 115
Query: 293 ESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEM-RSKGY--EMEMETCVKVLGRFSER 349
+ +HD ++Y A+ L + WK + EM RS ++ VKVLG+
Sbjct: 116 KRRNFEHDSTTYMALIHCLDEAGMLGEMWKTIQEMVRSTCVIGPADLSEIVKVLGK---A 172
Query: 350 NMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRE---NGNVL 406
MV +A+ ++ K KP+ N ++ ++ KV ++ E G+ L
Sbjct: 173 KMVNKALSIFYQIKGRKCKPTSNTYNSMILMLMQEGH-----HEKVHELYNEMCNEGDCL 227
Query: 407 TDAMLNSVLKALIS-VGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEF 465
D + S L A +GR + M+E G ++ + + I G+ ++A
Sbjct: 228 PDTVTYSALIAAFGKLGRDDSAISLFDEMKENGLHPTAKIYTTILGIYFKLGRVEKALGL 287
Query: 466 MDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYC 525
+ M+ G + + LIKG AG +++A F M+ KEG I+ L+N
Sbjct: 288 VQEMKEKGCALTVYTYTELIKGVGKAGKVEEAYSIFMNML-KEGCKPDVVLINNLINLLG 346
Query: 526 SKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRG-FKDALSLLCLMKDHGFPP- 583
R DA K + P TY +IK L + +A MK++G P
Sbjct: 347 KAGRLADAIKLFEE-MESLQCTPNVVTYNTVIKALFESKARASEAFLWYEKMKENGVVPS 405
Query: 584 ------FVDPFIKYVSKSGTSDDAIAFLKGMTSKRFPSMSVVLC-LFAAFFQARRHSEAQ 636
+D F K+ + A+ L+ M K F C L A +A+R+ A
Sbjct: 406 SFTYSILIDGF----CKTNRVEKALLLLEEMDEKGFAPCPAAYCSLINALGKAKRYEAAN 461
Query: 637 DLLSK 641
+L +
Sbjct: 462 ELFQE 466
Score = 48.9 bits (115), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 58/314 (18%), Positives = 130/314 (41%), Gaps = 6/314 (1%)
Query: 303 SYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFA 362
+Y + +G+ ++ + + M +G + ++ ++ + + +A+ L+E
Sbjct: 302 TYTELIKGVGKAGKVEEAYSIFMNMLKEGCKPDVVLINNLINLLGKAGRLADAIKLFEEM 361
Query: 363 MACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVG 422
+ + P+V +++ + SK F ++ +ENG V + + ++
Sbjct: 362 ESLQCTPNVVTYNTVIKALFESKARASEAFLWYEKM-KENGVVPSSFTYSILIDGFCKTN 420
Query: 423 RMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWV 482
R+ + +L+ M+E GF + L A + + ANE + + +++
Sbjct: 421 RVEKALLLLEEMDEKGFAPCPAAYCSLINALGKAKRYEAANELFQELRENCGYSSARVYA 480
Query: 483 SLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVR 542
+IK G L +A D F +M +K G + YA + L++ +A + +
Sbjct: 481 VMIKHLGKCGRLSEAVDLFNEM-KKLGCNPDVYAYNALMSGMVRVGMTDEAHSLLRT-ME 538
Query: 543 EYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFV---DPFIKYVSKSGTSD 599
E P ++ ++ G K A+ + MK+ P V + + +S++G +
Sbjct: 539 ENGCTPDLNSHNIILNGFARTGGPKGAIEMFTRMKNSKIKPDVVSYNTVLGCLSRAGMFE 598
Query: 600 DAIAFLKGMTSKRF 613
+A +K M SK F
Sbjct: 599 EAAKLMKEMNSKGF 612
>gi|297743291|emb|CBI36158.3| unnamed protein product [Vitis vinifera]
Length = 638
Score = 92.4 bits (228), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 104/425 (24%), Positives = 177/425 (41%), Gaps = 31/425 (7%)
Query: 233 SIEKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAE 292
S+ + R ++++ WG D E+ L L + + LV+ V+ K+ E + FF+WA
Sbjct: 57 SVRTLDERFIRILKIFKWGPDAEKALEVLKLKVDHRLVREVL-KIDVEIHVKIQFFKWAG 115
Query: 293 ESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEM-RSKGY--EMEMETCVKVLGRFSER 349
+ +HD ++Y A+ L + WK + EM RS ++ VKVLG+
Sbjct: 116 KRRNFEHDSTTYMALIHCLDEAGMLGEMWKTIQEMVRSTCVIGPADLSEIVKVLGK---A 172
Query: 350 NMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRE---NGNVL 406
MV +A+ ++ K KP+ N ++ ++ KV ++ E G+ L
Sbjct: 173 KMVNKALSIFYQIKGRKCKPTSNTYNSMILMLMQEGH-----HEKVHELYNEMCNEGDCL 227
Query: 407 TDAMLNSVLKALIS-VGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEF 465
D + S L A +GR + M+E G ++ + + I G+ ++A
Sbjct: 228 PDTVTYSALIAAFGKLGRDDSAISLFDEMKENGLHPTAKIYTTILGIYFKLGRVEKALGL 287
Query: 466 MDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYC 525
+ M+ G + + LIKG AG +++A F M+ KEG I+ L+N
Sbjct: 288 VQEMKEKGCALTVYTYTELIKGVGKAGKVEEAYSIFMNML-KEGCKPDVVLINNLINLLG 346
Query: 526 SKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRG-FKDALSLLCLMKDHGFPP- 583
R DA K + P TY +IK L + +A MK++G P
Sbjct: 347 KAGRLADAIKLFEE-MESLQCTPNVVTYNTVIKALFESKARASEAFLWYEKMKENGVVPS 405
Query: 584 ------FVDPFIKYVSKSGTSDDAIAFLKGMTSKRFPSMSVVLC-LFAAFFQARRHSEAQ 636
+D F K+ + A+ L+ M K F C L A +A+R+ A
Sbjct: 406 SFTYSILIDGF----CKTNRVEKALLLLEEMDEKGFAPCPAAYCSLINALGKAKRYEAAN 461
Query: 637 DLLSK 641
+L +
Sbjct: 462 ELFQE 466
Score = 48.9 bits (115), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 58/314 (18%), Positives = 130/314 (41%), Gaps = 6/314 (1%)
Query: 303 SYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFA 362
+Y + +G+ ++ + + M +G + ++ ++ + + +A+ L+E
Sbjct: 302 TYTELIKGVGKAGKVEEAYSIFMNMLKEGCKPDVVLINNLINLLGKAGRLADAIKLFEEM 361
Query: 363 MACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVG 422
+ + P+V +++ + SK F ++ +ENG V + + ++
Sbjct: 362 ESLQCTPNVVTYNTVIKALFESKARASEAFLWYEKM-KENGVVPSSFTYSILIDGFCKTN 420
Query: 423 RMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWV 482
R+ + +L+ M+E GF + L A + + ANE + + +++
Sbjct: 421 RVEKALLLLEEMDEKGFAPCPAAYCSLINALGKAKRYEAANELFQELRENCGYSSARVYA 480
Query: 483 SLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVR 542
+IK G L +A D F +M +K G + YA + L++ +A + +
Sbjct: 481 VMIKHLGKCGRLSEAVDLFNEM-KKLGCNPDVYAYNALMSGMVRVGMTDEAHSLLRT-ME 538
Query: 543 EYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFV---DPFIKYVSKSGTSD 599
E P ++ ++ G K A+ + MK+ P V + + +S++G +
Sbjct: 539 ENGCTPDLNSHNIILNGFARTGGPKGAIEMFTRMKNSKIKPDVVSYNTVLGCLSRAGMFE 598
Query: 600 DAIAFLKGMTSKRF 613
+A +K M SK F
Sbjct: 599 EAAKLMKEMNSKGF 612
>gi|356499433|ref|XP_003518545.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g06920-like [Glycine max]
Length = 905
Score = 92.0 bits (227), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 94/418 (22%), Positives = 186/418 (44%), Gaps = 13/418 (3%)
Query: 226 ATGSIDNSIE-----KVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDE 280
A+ S DN+++ K +C+V+ + WG +E L + +LV V+ +L D
Sbjct: 53 ASHSQDNALKSEGMRKTVHDVCRVLDTYPWGAALEDALNTFDEMPQPELVVGVIRRLKD- 111
Query: 281 PKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCV 340
+ AL +FRW E H +YNA+ ++ R ++ ++L+EM G+ TC+
Sbjct: 112 VRVALHYFRWVERKTKQLHSPEAYNALLMLMARTRNLEYLEQILEEMSMAGFGPSNNTCI 171
Query: 341 KVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFR 400
+++ F + ++EA + E K +P+ + T L+ + + + D L ++R +
Sbjct: 172 EMVASFVKSRKLREAFGVIETMRKFKFRPAYSAYTTLIGALSAAHEADPML--TLLRQMQ 229
Query: 401 ENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKD 460
E G +T + +++ GR+ +L M+ F A + + GK D
Sbjct: 230 EIGYEVTVHLFTTLICVFAREGRVDAALSLLDEMKSNSFNADLVLYNVCIDCFGKVGKVD 289
Query: 461 EANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLL 520
A +F +++ G D + S+I C A +D+A + F+++ + + YA + +
Sbjct: 290 MAWKFFHELKSQGLVPDDVTFTSMIGVLCKAERVDEAVELFEEL-DSNKSVPCVYAYNTM 348
Query: 521 VNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHG 580
+ Y S + +A + R+ + P Y ++ L + ++AL +L MK
Sbjct: 349 IMGYGSVGKFNEAYSLLERQKRKGCI-PSVIAYNCILTCLGRKGKVEEALRILEAMKMDA 407
Query: 581 FPPFV--DPFIKYVSKSGTSDDAIAFLKGMT-SKRFPSMSVVLCLFAAFFQARRHSEA 635
P + I + K+G + A+ M + FP++ V + +A+R EA
Sbjct: 408 APNLTSYNILIDMLCKAGELEAALKVQDSMKEAGLFPNIITVNIMIDRLCKAQRLDEA 465
Score = 42.4 bits (98), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 92/445 (20%), Positives = 176/445 (39%), Gaps = 36/445 (8%)
Query: 166 TYNLMLRIVGVHGLVQEFWGLVDVMKKKGY-GVASHVRNKMTEKFEKEG-LESDLEKLKG 223
YN +L +G G V+E +++ MK + S+ N + + K G LE+ L+
Sbjct: 379 AYNCILTCLGRKGKVEEALRILEAMKMDAAPNLTSY--NILIDMLCKAGELEAALKVQDS 436
Query: 224 IFATGSIDN--SIEKVASRICKVVRSD-----IWGDDVERQLRDLNVTFSNDLVKFVVDK 276
+ G N ++ + R+CK R D G D + D +VTF + ++D
Sbjct: 437 MKEAGLFPNIITVNIMIDRLCKAQRLDEACSIFLGLDHKVCTPD-SVTFCS-----LIDG 490
Query: 277 LGDEPK--KALIFFRWAEESGFVKHDESSYNAMASVL--GREDCIDRFWKVLDEMRSKGY 332
LG K A + + +SG + + + + GR++ + +K EM +G
Sbjct: 491 LGRHGKVNDAYMLYEKMLDSGQTPNAVVYTSLIRNFFKCGRKEDGHKIYK---EMMHRGC 547
Query: 333 EMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLF 392
++ + + +++ L+E A P V + L+ +V F
Sbjct: 548 SPDLMLLNNYMDCVFKAGEIEKGRALFEEIKAQGLTPDVRSYSILIHGLVKGG------F 601
Query: 393 SK-VVRVF---RENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSK 448
SK ++F +E G L N V+ G++ + ++L+ M+ G +
Sbjct: 602 SKDTYKLFYEMKEQGLHLDTRAYNIVIDGFCKSGKVNKAYQLLEEMKTKGLQPTVVTYGS 661
Query: 449 IAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKE 508
+ L+ + DEA + ++ D+ ++ SLI G G +D+A +++++K
Sbjct: 662 VIDGLAKIDRLDEAYMLFEEAKSKAVDLNVVVYSSLIDGFGKVGRIDEAYLILEELMQK- 720
Query: 509 GTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKD 568
G + Y + L++ K ID ++ P TY ++ L R F
Sbjct: 721 GLTPNTYTWNCLLDALV-KAEEIDEALVCFQNMKNLKCPPNEVTYSIMVNGLCKVRKFNK 779
Query: 569 ALSLLCLMKDHGFPPFVDPFIKYVS 593
A M+ G P + +S
Sbjct: 780 AFVFWQEMQKQGLKPNTITYTTMIS 804
>gi|148906470|gb|ABR16388.1| unknown [Picea sitchensis]
Length = 700
Score = 91.7 bits (226), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 98/444 (22%), Positives = 178/444 (40%), Gaps = 42/444 (9%)
Query: 235 EKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEES 294
E ++ICK + D W + L + + D V V++ L + + AL FF+WA++
Sbjct: 151 EDTVNKICKAIEEDQWECLQDNFLNSMAQDLNPDAVVKVLN-LQTDAQNALRFFQWADKQ 209
Query: 295 GFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKE 354
H+ +Y M +LGR +L +M+++G E+ + + KE
Sbjct: 210 EGYDHNTDAYFTMIDILGRAKMFTELQSLLQKMQTQGREITRSMLHSFVMSYGRSGRFKE 269
Query: 355 AVDLYEFAMACKNKPSVNCCTF--LLRKIVVSKQLDMR-----------------LFSKV 395
+++ + +P + + +L +V +K+LDM ++ +
Sbjct: 270 SLEAFNLMKEMGYEPGLIDTAYNSVLVSLVKNKKLDMAENLFAQMINNGVSCNNLTYTSM 329
Query: 396 VRVF-----RENGNVLTDAMLNS-----------VLKALISVGRMGECNKILKAMEEGGF 439
++ F E+ L D M+ + V+ AL + + +L+ M E G
Sbjct: 330 IQCFFLKEKMEDAMKLLDDMIQNNYAPDVVTYTIVISALCKRKMIEQAYGVLQKMRENGC 389
Query: 440 IASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAAD 499
+ + + L + + +EA E + ME G + L G C LD+A +
Sbjct: 390 EPNIYTYNALIQGLCAVRRPEEALELVTLMEQGGVPPNIYTYTILTHGLCKLRRLDRAKE 449
Query: 500 CFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKN 559
F + + + G + L+N YC +R I+A + + + D P H TY LI+
Sbjct: 450 MFNEALAR-GLKPNRVTYNTLLNGYCRGSRLIEAMDILKE-MHQNDCTPDHVTYTTLIQG 507
Query: 560 LLVQRGFKDALSLLCLMKDHGFPPFVDP---FIKYVSKSGTSDDAIAFLKGMTSKRFP-S 615
L+ DAL + M++ G+ D + +++ G DA F + M + F S
Sbjct: 508 LVQGNQLPDALRMHDEMENKGYDVNFDTLNILARGLARVGNHKDASIFYRRMKDRGFAYS 567
Query: 616 MSVVLCLFAAFFQARRHSEAQDLL 639
S A EAQ LL
Sbjct: 568 ASDYYLAIHCLSTAGEMEEAQALL 591
Score = 76.3 bits (186), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 105/489 (21%), Positives = 198/489 (40%), Gaps = 33/489 (6%)
Query: 131 EMVLKVLKNLESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLVDVM 190
+ V+KVL NL++ A RFF W ++E ++ Y M+ I+G + E L+ M
Sbjct: 184 DAVVKVL-NLQTDAQNALRFFQWADKQEGYDHNTDAYFTMIDILGRAKMFTELQSLLQKM 242
Query: 191 KKKGYGVASHVRNKMTEKFE-----KEGLES-DLEKLKGIFATGSIDNSIEKVASRICKV 244
+ +G + + + + KE LE+ +L K G + G ID + V + K
Sbjct: 243 QTQGREITRSMLHSFVMSYGRSGRFKESLEAFNLMKEMG-YEPGLIDTAYNSVLVSLVKN 301
Query: 245 VRSD----IWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKAL---IFFRWAEESGFV 297
+ D ++ + + N+T+++ + F + + ++ K L I +A
Sbjct: 302 KKLDMAENLFAQMINNGVSCNNLTYTSMIQCFFLKEKMEDAMKLLDDMIQNNYAP----- 356
Query: 298 KHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVD 357
D +Y + S L + I++ + VL +MR G E + T ++ +EA++
Sbjct: 357 --DVVTYTIVISALCKRKMIEQAYGVLQKMRENGCEPNIYTYNALIQGLCAVRRPEEALE 414
Query: 358 LYEFAMACKNKPSVNCCTFLLRKIVVSKQLDM--RLFSKVVRVFRENGNVLTDAMLNSVL 415
L P++ T L + ++LD +F++ + + V + +LN
Sbjct: 415 LVTLMEQGGVPPNIYTYTILTHGLCKLRRLDRAKEMFNEALARGLKPNRVTYNTLLNGYC 474
Query: 416 KALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSD 475
+ R+ E ILK M + + + L + +A D ME G D
Sbjct: 475 RG----SRLIEAMDILKEMHQNDCTPDHVTYTTLIQGLVQGNQLPDALRMHDEMENKGYD 530
Query: 476 VGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACK 535
V L +G G+ K A F + ++ G +++ L ++ + +A
Sbjct: 531 VNFDTLNILARGLARVGN-HKDASIFYRRMKDRGFAYSASDYYLAIHCLSTAGEMEEAQA 589
Query: 536 FVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPF---IKYV 592
++ + + P TTY +IK Q DA ++L M ++G P + IK
Sbjct: 590 LLYEMINK-GYSPNLTTYNTMIKGFCRQGRLDDADAMLNFMIENGIGPDTGSYNILIKEF 648
Query: 593 SKSGTSDDA 601
G + DA
Sbjct: 649 HNQGRTQDA 657
>gi|302757207|ref|XP_002962027.1| hypothetical protein SELMODRAFT_77588 [Selaginella moellendorffii]
gi|300170686|gb|EFJ37287.1| hypothetical protein SELMODRAFT_77588 [Selaginella moellendorffii]
Length = 814
Score = 90.9 bits (224), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 101/405 (24%), Positives = 165/405 (40%), Gaps = 32/405 (7%)
Query: 245 VRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSY 304
V + G V LR L VT + A+ FFRWA E +HD +Y
Sbjct: 80 VHGQVLGSHVAAVLRSLKVTGT-----------------AISFFRWAGEQAGFQHDVFTY 122
Query: 305 NAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMA 364
N + ++L E + + + +EM G + ++ F+ +AV +E
Sbjct: 123 NCLMNLLVAEKNYSQCYAIHEEMLKAGIAPNTFSFNILIRSFARTRRADDAVTCFEIMKR 182
Query: 365 CKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFREN---GNVLTD-AMLNSVLKALIS 420
+ KP ++ TFL I+V + K VF E G V D A+ ++++ L+
Sbjct: 183 KRCKPDLH--TFL---ILVDCLCKAGMDEKAFEVFHEMMAMGFVPPDRALHTAMVRTLLK 237
Query: 421 VGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKM 480
R+ E ++ ME+ GF + + + L+ AG EA + +D+M A +
Sbjct: 238 AKRVKEAREVFGQMEKCGFPPDAIAYNTMIDGLAKAGHAQEALKVLDNMLAKACVPTEVT 297
Query: 481 WVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNC 540
+ L+ C AG L++A + F+ M G L++ + R +AC
Sbjct: 298 YGILVNSLCKAGTLERAEELFRVMA-ASGFRPNSVIYTSLIHGFAKSGRMKEACSLFDEM 356
Query: 541 VREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPF---IKYVSKSGT 597
V E +P T+ +I L F+ A M G P V + I+ +SK G
Sbjct: 357 V-EAGYRPDVITHTVMIDGLCKSGNFEQAAKSFEEMMRGGCKPNVVTYTTIIQGLSKIGR 415
Query: 598 SDDAIAFLKGMTSKR-FPSMSVVLCLFAAFFQARRHSEAQDLLSK 641
+A +KGM + FP +CL F + R EA LL +
Sbjct: 416 VANAFRIMKGMIAHGCFPDSVTYICLLDGFCKLGRLDEAAQLLDE 460
Score = 60.1 bits (144), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 71/339 (20%), Positives = 139/339 (41%), Gaps = 15/339 (4%)
Query: 311 LGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVD-LYEFAMACKNKP 369
LGR +D ++LDE+ ++ ++ + V+ +D L+E + A
Sbjct: 448 LGR---LDEAAQLLDELDKCSSSPNLQLYSSLVKGLCDGGSVENTLDDLFEQSKAAAENL 504
Query: 370 SVNCCTFLLRKIVVSKQLD--MRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGEC 427
C ++ + + +LD R+F ++V + + ++N + ++ R+
Sbjct: 505 DPGLCCSIIVGLCKTGRLDEACRIFQRMVSEGCKPDATTYNILINGLCRS--RENRVERA 562
Query: 428 NKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKG 487
+L +E G++ + + + L G+ D A + ++ + G + + +L G
Sbjct: 563 FALLHDLEMVGYLPDAVTYTPLCIGLCKIGEVDRAVKMLEEASSRGWNADVVAYTALCTG 622
Query: 488 HCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLK 547
C G +D+A FQ+MV + G A A ++N + DACKF + + K
Sbjct: 623 LCYQGQVDRAVSLFQEMVRQGGAPDAA-AYCCIINGLIKGKKLEDACKFFDEMIGKGQ-K 680
Query: 548 PWHTTYEELIKNLL----VQRGFKDALSLLCLMKDHGFPPFVDPFIKYVSKSGTSDDAIA 603
P TY L++ L V F +L + G D I K+ D A+
Sbjct: 681 PTVATYTALVQALCHAGNVDEAFHRFEGMLARGELVGSVMIYDALIHGFCKALKVDAALK 740
Query: 604 FLKGMTSK-RFPSMSVVLCLFAAFFQARRHSEAQDLLSK 641
+ M S+ P+ LF ++ + +AQ+LL +
Sbjct: 741 LFEDMISRGNVPTAVTSASLFDGLVRSGKTEKAQELLQE 779
Score = 47.0 bits (110), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 83/373 (22%), Positives = 132/373 (35%), Gaps = 50/373 (13%)
Query: 282 KKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVK 341
K+A F E+ GF D +YN M L + KVLD M +K T
Sbjct: 242 KEAREVFGQMEKCGF-PPDAIAYNTMIDGLAKAGHAQEALKVLDNMLAKACVPTEVTYGI 300
Query: 342 VLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLD--MRLFSKVVRVF 399
++ + ++ A +L+ A +P+ T L+ S ++ LF ++V
Sbjct: 301 LVNSLCKAGTLERAEELFRVMAASGFRPNSVIYTSLIHGFAKSGRMKEACSLFDEMVEAG 360
Query: 400 RENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKK 459
+ M++ + K+ G + K + M GG + + I LS G+
Sbjct: 361 YRPDVITHTVMIDGLCKS----GNFEQAAKSFEEMMRGGCKPNVVTYTTIIQGLSKIGRV 416
Query: 460 DEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAA--------------------- 498
A M M A G ++ L+ G C G LD+AA
Sbjct: 417 ANAFRIMKGMIAHGCFPDSVTYICLLDGFCKLGRLDEAAQLLDELDKCSSSPNLQLYSSL 476
Query: 499 ---------------DCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVRE 543
D F++ G ++V C R +AC+ V E
Sbjct: 477 VKGLCDGGSVENTLDDLFEQSKAAAENLDPGLCCSIIVG-LCKTGRLDEACRIFQRMVSE 535
Query: 544 YDLKPWHTTYEELIKNLLVQRG--FKDALSLLCLMKDHGFPP---FVDPFIKYVSKSGTS 598
KP TTY LI L R + A +LL ++ G+ P P + K G
Sbjct: 536 -GCKPDATTYNILINGLCRSRENRVERAFALLHDLEMVGYLPDAVTYTPLCIGLCKIGEV 594
Query: 599 DDAIAFLKGMTSK 611
D A+ L+ +S+
Sbjct: 595 DRAVKMLEEASSR 607
Score = 42.0 bits (97), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 66/334 (19%), Positives = 127/334 (38%), Gaps = 35/334 (10%)
Query: 193 KGYGVASHVRNKMTEKFEK-----EGLESDL--EKLKGIFATGSIDNS---IEKVASRIC 242
KG V N + + FE+ E L+ L + G+ TG +D + +++ S C
Sbjct: 478 KGLCDGGSVENTLDDLFEQSKAAAENLDPGLCCSIIVGLCKTGRLDEACRIFQRMVSEGC 537
Query: 243 KVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDES 302
K + T N L+ + + ++A E G++ D
Sbjct: 538 KP-----------------DATTYNILINGLCRSRENRVERAFALLHDLEMVGYLP-DAV 579
Query: 303 SYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFA 362
+Y + L + +DR K+L+E S+G+ ++ + + V AV L++
Sbjct: 580 TYTPLCIGLCKIGEVDRAVKMLEEASSRGWNADVVAYTALCTGLCYQGQVDRAVSLFQEM 639
Query: 363 MACKNKPSVNCCTFLLRKIVVSKQLD--MRLFSKVVRVFRENGNVLTDAMLNSVLKALIS 420
+ P ++ ++ K+L+ + F +++ G T A ++++AL
Sbjct: 640 VRQGGAPDAAAYCCIINGLIKGKKLEDACKFFDEMI----GKGQKPTVATYTALVQALCH 695
Query: 421 VGRMGECNKILKAM-EEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDK 479
G + E + M G + S + + A K D A + + M + G+
Sbjct: 696 AGNVDEAFHRFEGMLARGELVGSVMIYDALIHGFCKALKVDAALKLFEDMISRGNVPTAV 755
Query: 480 MWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHA 513
SL G +G +KA + Q+M HA
Sbjct: 756 TSASLFDGLVRSGKTEKAQELLQEMAAGGSPPHA 789
>gi|302775294|ref|XP_002971064.1| hypothetical protein SELMODRAFT_95253 [Selaginella moellendorffii]
gi|300161046|gb|EFJ27662.1| hypothetical protein SELMODRAFT_95253 [Selaginella moellendorffii]
Length = 814
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 101/405 (24%), Positives = 165/405 (40%), Gaps = 32/405 (7%)
Query: 245 VRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSY 304
V + G V LR L VT + A+ FFRWA E +HD +Y
Sbjct: 80 VHGQVLGSHVAAVLRSLKVTGT-----------------AISFFRWAGEQAGFQHDVFTY 122
Query: 305 NAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMA 364
N + ++L E + + + +EM G + ++ F+ +AV +E
Sbjct: 123 NCLMNLLVAEKNYSQCYAIHEEMLKAGIAPNTFSFNILIRSFARTRRADDAVTCFEIMKR 182
Query: 365 CKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFREN---GNVLTD-AMLNSVLKALIS 420
+ KP ++ TFL I+V + K VF E G V D A+ ++++ L+
Sbjct: 183 KRCKPDLH--TFL---ILVDCLCKAGMDEKAFEVFHEMMAMGFVPPDRALHTAMVRTLLK 237
Query: 421 VGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKM 480
R+ E ++ ME+ GF + + + L+ AG EA + +D+M A +
Sbjct: 238 AKRVKEAREVFGQMEKCGFPPDAIAYNTMIDGLAKAGHAQEALKVLDNMLAKACVPTEVT 297
Query: 481 WVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNC 540
+ L+ C AG L++A + F+ M G L++ + R +AC
Sbjct: 298 YGILVNSLCKAGTLERAEELFRVMA-ASGFRPNSVIYTSLIHGFAKSGRMKEACSLFDEM 356
Query: 541 VREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPF---IKYVSKSGT 597
V E +P T+ +I L F+ A M G P V + I+ +SK G
Sbjct: 357 V-EAGYRPDVITHTVMIDGLCKSGNFEQAAKSFEEMMRGGCKPNVVTYTTIIQGLSKIGR 415
Query: 598 SDDAIAFLKGMTSKR-FPSMSVVLCLFAAFFQARRHSEAQDLLSK 641
+A +KGM + FP +CL F + R EA LL +
Sbjct: 416 VANAFRIMKGMIAHGCFPDSVTYICLLDGFCKLGRLDEAAQLLDE 460
Score = 62.8 bits (151), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 72/339 (21%), Positives = 142/339 (41%), Gaps = 15/339 (4%)
Query: 311 LGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVD-LYEFAMACKNKP 369
LGR +D ++LDE+ ++ ++ + V++ +D L+E + A
Sbjct: 448 LGR---LDEAAQLLDELDKCSSSPNLQLYSSLVNGLCDGGSVEKTLDDLFEQSKAAAETL 504
Query: 370 SVNCCTFLLRKIVVSKQLD--MRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGEC 427
C ++ + + +LD R+F ++V + + ++N + ++ R+
Sbjct: 505 DPGLCCSIIVGLCKTGRLDEACRIFQRMVSEGCKPDATTYNILINGLCRS--RENRVERA 562
Query: 428 NKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKG 487
+L +E+ G++ + + + L G+ D A + ++ + G + + +L G
Sbjct: 563 FALLHDLEKVGYLPDAVTYTPLCIGLCKIGEVDRAVKMLEEASSRGWNADVVAYTALCTG 622
Query: 488 HCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLK 547
C G +D+A FQ+MV + G A A ++N + DACKF + + K
Sbjct: 623 LCYQGQVDRAVSLFQEMVRQGGAPDAA-AYCCIINGLIKVKKLEDACKFFDEMIGKGQ-K 680
Query: 548 PWHTTYEELIKNLL----VQRGFKDALSLLCLMKDHGFPPFVDPFIKYVSKSGTSDDAIA 603
P TY L++ L V F S+L + G D I K+ D A+
Sbjct: 681 PTVATYTALVQALCHAGNVDEAFHRFESMLARGELVGSVMIYDALIHGFCKALKVDAALK 740
Query: 604 FLKGMTSK-RFPSMSVVLCLFAAFFQARRHSEAQDLLSK 641
+ M S+ P+ LF ++ + +AQ+LL +
Sbjct: 741 LFEDMISRGNVPTAVTSASLFDGLVRSGKTEKAQELLQE 779
Score = 49.7 bits (117), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 84/373 (22%), Positives = 133/373 (35%), Gaps = 50/373 (13%)
Query: 282 KKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVK 341
K+A F E+ GF D +YN M L + KVLD M +K T
Sbjct: 242 KEAREVFGQMEKCGF-PPDAIAYNTMIDGLAKAGHAQEALKVLDNMLAKACVPTEVTYGI 300
Query: 342 VLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLD--MRLFSKVVRVF 399
++ + ++ A +L+ A +P+ T L+ S ++ LF ++V
Sbjct: 301 LVNSLCKAGTLERAEELFRVMAASGFRPNSVIYTSLIHGFAKSGRMKEACSLFDEMVEAG 360
Query: 400 RENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKK 459
+ M++ + K+ G + K + M GG + + I LS G+
Sbjct: 361 YRPDVITHTVMIDGLCKS----GNFEQAAKSFEEMMRGGCKPNVVTYTTIIQGLSKIGRV 416
Query: 460 DEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAA--------------------- 498
A M M A G ++ L+ G C G LD+AA
Sbjct: 417 ANAFRIMKGMIAHGCFPDSVTYICLLDGFCKLGRLDEAAQLLDELDKCSSSPNLQLYSSL 476
Query: 499 ---------------DCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVRE 543
D F++ T G ++V C R +AC+ V E
Sbjct: 477 VNGLCDGGSVEKTLDDLFEQSKAAAETLDPGLCCSIIVG-LCKTGRLDEACRIFQRMVSE 535
Query: 544 YDLKPWHTTYEELIKNLLVQRG--FKDALSLLCLMKDHGFPP---FVDPFIKYVSKSGTS 598
KP TTY LI L R + A +LL ++ G+ P P + K G
Sbjct: 536 -GCKPDATTYNILINGLCRSRENRVERAFALLHDLEKVGYLPDAVTYTPLCIGLCKIGEV 594
Query: 599 DDAIAFLKGMTSK 611
D A+ L+ +S+
Sbjct: 595 DRAVKMLEEASSR 607
Score = 40.8 bits (94), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 49/255 (19%), Positives = 102/255 (40%), Gaps = 8/255 (3%)
Query: 262 NVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFW 321
+ T N L+ + + ++A E+ G++ D +Y + L + +DR
Sbjct: 540 DATTYNILINGLCRSRENRVERAFALLHDLEKVGYLP-DAVTYTPLCIGLCKIGEVDRAV 598
Query: 322 KVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKI 381
K+L+E S+G+ ++ + + V AV L++ + P ++ +
Sbjct: 599 KMLEEASSRGWNADVVAYTALCTGLCYQGQVDRAVSLFQEMVRQGGAPDAAAYCCIINGL 658
Query: 382 VVSKQLD--MRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGEC-NKILKAMEEGG 438
+ K+L+ + F +++ G T A ++++AL G + E ++ + G
Sbjct: 659 IKVKKLEDACKFFDEMI----GKGQKPTVATYTALVQALCHAGNVDEAFHRFESMLARGE 714
Query: 439 FIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAA 498
+ S + + A K D A + + M + G+ SL G +G +KA
Sbjct: 715 LVGSVMIYDALIHGFCKALKVDAALKLFEDMISRGNVPTAVTSASLFDGLVRSGKTEKAQ 774
Query: 499 DCFQKMVEKEGTSHA 513
+ Q+M HA
Sbjct: 775 ELLQEMAAGGSPPHA 789
>gi|297829236|ref|XP_002882500.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297328340|gb|EFH58759.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 871
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 91/403 (22%), Positives = 168/403 (41%), Gaps = 8/403 (1%)
Query: 236 KVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESG 295
++ + IC V+ + WG E L LN + V V+ +L D +A+ +FRW E
Sbjct: 34 QIVNDICNVLETGAWGPSAENALSALNFKPQPEFVIGVLRRLKD-VNRAIEYFRWYERRT 92
Query: 296 FVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEA 355
+ H SYN++ V+ R D ++L EM G+ + TC++++ + N ++E
Sbjct: 93 ELPHCPESYNSLLLVMARCRNFDALDQILGEMSVAGFGPSVNTCIEMVLSCVKANKLREG 152
Query: 356 VDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVL 415
D+ + K +P+ + T L+ DM L + + +E G T + +++
Sbjct: 153 FDVVQNMRKFKFRPAFSAYTTLIGAFSAVNHSDMML--TLFQQMQELGYEPTVHLFTTLI 210
Query: 416 KALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSD 475
+ GR+ +L M+ A + + GK D A +F +EA+G
Sbjct: 211 RGFAKEGRVDSALSLLDEMKSSSLDADIVLYNVCIDSFGKVGKVDMAWKFFHEIEANGLK 270
Query: 476 VGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACK 535
+ + S+I C A LD+A + F+ + EK YA + ++ Y S + +A
Sbjct: 271 PDEVTYTSMIGVLCKANRLDEAVEMFEHL-EKNRRVPCTYAYNTMIMGYGSAGKFDEAYS 329
Query: 536 FVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPF--VDPFIKYVS 593
+ R P Y ++ L +AL + MK P + I +
Sbjct: 330 LLER-QRAKGSIPSVIAYNCILTCLRKMGKVDEALRVFEEMKKDAAPNLSTYNILIDMLC 388
Query: 594 KSGTSDDAIAFLKGMT-SKRFPSMSVVLCLFAAFFQARRHSEA 635
++G D A M + FP++ V + ++++ EA
Sbjct: 389 RAGKLDCAFELRDSMQKAGLFPNVRTVNIMVDRLCKSQKLDEA 431
Score = 46.2 bits (108), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 46/209 (22%), Positives = 85/209 (40%), Gaps = 5/209 (2%)
Query: 400 RENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKK 459
+E G VL N V+ G++ + ++L+ M+ GF + + L+ +
Sbjct: 579 KEQGCVLDTRAYNIVIDGFCKCGKVNKAYQLLEEMKTKGFEPTVVTYGSVIDGLAKIDRL 638
Query: 460 DEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDL 519
DEA + ++ ++ ++ SLI G G +D+A +++++K G + Y +
Sbjct: 639 DEAYMLFEEAKSKRIELNVVIYSSLIDGFGKVGRIDEAYLILEELMQK-GLTPNVYTWNS 697
Query: 520 LVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDH 579
L++ K I+ ++E P TY LI L R F A M+
Sbjct: 698 LLDALV-KAEEINEALVCFQSMKELKCTPNQVTYGILINGLCKVRKFNKAFVFWQEMQKQ 756
Query: 580 GFPPFVDPFIKYVS---KSGTSDDAIAFL 605
G P + +S K+G +A A
Sbjct: 757 GMKPSTISYTTMISGLAKAGNIAEAGALF 785
Score = 43.5 bits (101), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 59/264 (22%), Positives = 109/264 (41%), Gaps = 18/264 (6%)
Query: 269 LVKFVVDKLGDEPK--KALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDE 326
L +D G K A FF E +G +K DE +Y +M VL + + +D ++ +
Sbjct: 240 LYNVCIDSFGKVGKVDMAWKFFHEIEANG-LKPDEVTYTSMIGVLCKANRLDEAVEMFEH 298
Query: 327 M-RSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSV---NCCTFLLRKIV 382
+ +++ ++G + EA L E A + PSV NC LRK
Sbjct: 299 LEKNRRVPCTYAYNTMIMG-YGSAGKFDEAYSLLERQRAKGSIPSVIAYNCILTCLRK-- 355
Query: 383 VSKQLDMRLFSKVVRVFRE--NGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFI 440
M + +RVF E + N ++ L G++ ++ +M++ G
Sbjct: 356 ------MGKVDEALRVFEEMKKDAAPNLSTYNILIDMLCRAGKLDCAFELRDSMQKAGLF 409
Query: 441 ASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADC 500
+ + + RL + K DEA + M+ + + SLI G G +D A
Sbjct: 410 PNVRTVNIMVDRLCKSQKLDEACAIFEQMDYKVCTPDEITFCSLIDGLGKVGRVDDAYKI 469
Query: 501 FQKMVEKEGTSHAGYAIDLLVNTY 524
++KM++ + +++ L+ N +
Sbjct: 470 YEKMLDSDCRTNSIVYTSLIKNFF 493
Score = 42.7 bits (99), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 54/256 (21%), Positives = 108/256 (42%), Gaps = 22/256 (8%)
Query: 287 FFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRF 346
F +E G V D +YN + + +++ +++L+EM++KG+E + T V+
Sbjct: 574 LFYSMKEQGCV-LDTRAYNIVIDGFCKCGKVNKAYQLLEEMKTKGFEPTVVTYGSVIDGL 632
Query: 347 SERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRV-------- 398
++ + + EA L+E A + + + +V ++ S +D F KV R+
Sbjct: 633 AKIDRLDEAYMLFEEAKSKRIELNV---------VIYSSLIDG--FGKVGRIDEAYLILE 681
Query: 399 -FRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAG 457
+ G NS+L AL+ + E ++M+E + + L
Sbjct: 682 ELMQKGLTPNVYTWNSLLDALVKAEEINEALVCFQSMKELKCTPNQVTYGILINGLCKVR 741
Query: 458 KKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAI 517
K ++A F M+ G + ++I G AG++ +A F + G +
Sbjct: 742 KFNKAFVFWQEMQKQGMKPSTISYTTMISGLAKAGNIAEAGALFDRFKANGGVPDSA-CY 800
Query: 518 DLLVNTYCSKNRAIDA 533
+ ++ + NRA+DA
Sbjct: 801 NAMIEGLSNGNRAMDA 816
>gi|255551759|ref|XP_002516925.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223544013|gb|EEF45539.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 901
Score = 90.5 bits (223), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 96/426 (22%), Positives = 174/426 (40%), Gaps = 40/426 (9%)
Query: 232 NSIEKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWA 291
+ ++V +CK++ S WG DVE L + DLV V+ + D +A+ +FRW
Sbjct: 60 GTAKEVVDDVCKILESGNWGPDVENALSLFVESPKTDLVIGVLRRAKD-VNQAISYFRWT 118
Query: 292 EESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNM 351
E +Y+++ V+ + D F ++L EM G+ +TC++++ + N
Sbjct: 119 ERKTDQALCPEAYDSLLLVMAKNVKFDYFEQILGEMSIAGFGPSTKTCIELILSCIKSNK 178
Query: 352 VKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAML 411
++E DL + K +P+ + T L+ + ++ D+ L + +E G ++ +
Sbjct: 179 LREGFDLIQCMRKFKFRPAFSAYTTLIGALSSVQESDIML--TLFHQMQELGYEVSVHLF 236
Query: 412 NSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEA 471
+V++ GR+ +L M+ A + + AGK D A +F +++
Sbjct: 237 TTVIRVFAREGRLDAALSLLDEMKSNCLHADIVLYNVCIDCFGKAGKVDMAWKFFHEIKS 296
Query: 472 SGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCS----- 526
G D + S+I C LD+A + F++M E+ YA + ++ Y S
Sbjct: 297 HGLLPDDVTYTSMIGVLCKGNRLDEAVEIFEQM-EQNRNVPCAYAYNTMIMGYGSAGKFD 355
Query: 527 ---------KNRAIDACKFVHNCV--------------REY-----DLKPWHTTYEELIK 558
K R +NC+ R + D P +TY LI
Sbjct: 356 EAYSLLERQKARGCIPSVIAYNCILTCLGKKGRLGEALRTFEEMKKDAAPNLSTYNVLID 415
Query: 559 NLLVQRGFKDALSLLCLMKDHGFPP---FVDPFIKYVSKSGTSDDAIAFLKGMTSKRFPS 615
L + A + MK+ G P V+ I + K+ D+A + +GM K
Sbjct: 416 MLCKAGEVEAAFKVRDAMKEAGLFPNVMTVNIMIDRLCKAKKLDEACSIFEGMNHKICSP 475
Query: 616 MSVVLC 621
V C
Sbjct: 476 DEVTFC 481
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 123/592 (20%), Positives = 222/592 (37%), Gaps = 103/592 (17%)
Query: 131 EMVLKVLKNLESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLVDVM 190
++V+ VL+ + ++A +F W K + L + Y+ +L ++ + F ++ M
Sbjct: 96 DLVIGVLRRAKDV-NQAISYFRWTERKTDQALCPEAYDSLLLVMAKNVKFDYFEQILGEM 154
Query: 191 KKKGYGVASHV----------RNKMTEKFEKEGLESDLEKLKGIFATGSIDNSIEKVASR 240
G+G ++ NK+ E F+ L + K K A + I ++S
Sbjct: 155 SIAGFGPSTKTCIELILSCIKSNKLREGFD---LIQCMRKFKFRPAFSAYTTLIGALSS- 210
Query: 241 ICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPK-KALIFFRWAEESGFVKH 299
V SDI + Q+++L S L V+ E + A + +S +
Sbjct: 211 ---VQESDIM-LTLFHQMQELGYEVSVHLFTTVIRVFAREGRLDAALSLLDEMKSNCLHA 266
Query: 300 DESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLY 359
D YN G+ +D WK E++S G + T ++G + N + EAV+++
Sbjct: 267 DIVLYNVCIDCFGKAGKVDMAWKFFHEIKSHGLLPDDVTYTSMIGVLCKGNRLDEAVEIF 326
Query: 360 EFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALI 419
E +N P ++ + + D +S + R + G + + N +L L
Sbjct: 327 EQMEQNRNVPCAYAYNTMIMGYGSAGKFD-EAYSLLERQ-KARGCIPSVIAYNCILTCLG 384
Query: 420 SVGRMGE--------------------------CN--------KILKAMEEGGFIASSNM 445
GR+GE C K+ AM+E G +
Sbjct: 385 KKGRLGEALRTFEEMKKDAAPNLSTYNVLIDMLCKAGEVEAAFKVRDAMKEAGLFPNVMT 444
Query: 446 KSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMV 505
+ + RL A K DEA + M + + SLI G G +D A +++M+
Sbjct: 445 VNIMIDRLCKAKKLDEACSIFEGMNHKICSPDEVTFCSLIDGLGKQGRVDDAYRLYEQML 504
Query: 506 EKE------------------GTSHAGYAI-DLLVNTYCSKN-RAIDA---CKF------ 536
+ + G G+ I +++ CS + R ++A C F
Sbjct: 505 DSDKIPNAVVYTSLIKSFFKCGRKEDGHKIFKEMIHRGCSPDLRLLNAYMDCVFKAGETG 564
Query: 537 ----VHNCVREYDLKPWHTTYEELIKNLLVQRGF-KDALSLL-------CLMKDHGFPPF 584
+ ++ P +Y LI L V+ GF ++ L C++ H + F
Sbjct: 565 KGRALFEEIKSRGFIPDVMSYSILIHGL-VKAGFARETYELFYAMKEQGCVLDTHAYNTF 623
Query: 585 VDPFIKYVSKSGTSDDAIAFLKGMTSK-RFPSMSVVLCLFAAFFQARRHSEA 635
+D F KSG + A L+ M +K R P++ + + R EA
Sbjct: 624 IDGF----CKSGKVNKAYQLLEEMKTKGRQPTVVTYGSVIDGLAKIDRLDEA 671
Score = 48.1 bits (113), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 46/191 (24%), Positives = 78/191 (40%), Gaps = 4/191 (2%)
Query: 394 KVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRL 453
+++ + G T SV+ L + R+ E + + + G + + S +
Sbjct: 638 QLLEEMKTKGRQPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSNGLELNVVIYSSLIDGF 697
Query: 454 SSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGT-SH 512
G+ DEA M+ + G W L+ A ++++A CFQ M +GT +H
Sbjct: 698 GKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKAEEINEALVCFQNMKNLKGTPNH 757
Query: 513 AGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSL 572
Y+I L+N C + A F +++ LKP TY +I L +A SL
Sbjct: 758 ITYSI--LINGLCRVRKFNKAFVFWQE-MQKQGLKPNTITYTTMIAGLAKAGNIAEASSL 814
Query: 573 LCLMKDHGFPP 583
K +G P
Sbjct: 815 FERFKANGGVP 825
>gi|15231338|ref|NP_187348.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75186627|sp|Q9M907.1|PP217_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g06920
gi|6728999|gb|AAF26996.1|AC016827_7 hypothetical protein [Arabidopsis thaliana]
gi|332640955|gb|AEE74476.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 871
Score = 89.0 bits (219), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 90/403 (22%), Positives = 167/403 (41%), Gaps = 8/403 (1%)
Query: 236 KVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESG 295
+ + IC V+ + WG E L L+ + V V+ +L D +A+ +FRW E
Sbjct: 34 QTVNDICNVLETGPWGPSAENTLSALSFKPQPEFVIGVLRRLKD-VNRAIEYFRWYERRT 92
Query: 296 FVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEA 355
+ H SYN++ V+ R D ++L EM G+ + TC++++ + N ++E
Sbjct: 93 ELPHCPESYNSLLLVMARCRNFDALDQILGEMSVAGFGPSVNTCIEMVLGCVKANKLREG 152
Query: 356 VDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVL 415
D+ + K +P+ + T L+ DM L + + +E G T + +++
Sbjct: 153 YDVVQMMRKFKFRPAFSAYTTLIGAFSAVNHSDMML--TLFQQMQELGYEPTVHLFTTLI 210
Query: 416 KALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSD 475
+ GR+ +L M+ A + + GK D A +F +EA+G
Sbjct: 211 RGFAKEGRVDSALSLLDEMKSSSLDADIVLYNVCIDSFGKVGKVDMAWKFFHEIEANGLK 270
Query: 476 VGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACK 535
+ + S+I C A LD+A + F+ + EK YA + ++ Y S + +A
Sbjct: 271 PDEVTYTSMIGVLCKANRLDEAVEMFEHL-EKNRRVPCTYAYNTMIMGYGSAGKFDEAYS 329
Query: 536 FVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPF--VDPFIKYVS 593
+ R P Y ++ L +AL + MK P + I +
Sbjct: 330 LLER-QRAKGSIPSVIAYNCILTCLRKMGKVDEALKVFEEMKKDAAPNLSTYNILIDMLC 388
Query: 594 KSGTSDDAIAFLKGMT-SKRFPSMSVVLCLFAAFFQARRHSEA 635
++G D A M + FP++ V + ++++ EA
Sbjct: 389 RAGKLDTAFELRDSMQKAGLFPNVRTVNIMVDRLCKSQKLDEA 431
Score = 46.2 bits (108), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 46/209 (22%), Positives = 85/209 (40%), Gaps = 5/209 (2%)
Query: 400 RENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKK 459
+E G VL N V+ G++ + ++L+ M+ GF + + L+ +
Sbjct: 579 KEQGCVLDTRAYNIVIDGFCKCGKVNKAYQLLEEMKTKGFEPTVVTYGSVIDGLAKIDRL 638
Query: 460 DEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDL 519
DEA + ++ ++ ++ SLI G G +D+A +++++K G + Y +
Sbjct: 639 DEAYMLFEEAKSKRIELNVVIYSSLIDGFGKVGRIDEAYLILEELMQK-GLTPNLYTWNS 697
Query: 520 LVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDH 579
L++ K I+ ++E P TY LI L R F A M+
Sbjct: 698 LLDALV-KAEEINEALVCFQSMKELKCTPNQVTYGILINGLCKVRKFNKAFVFWQEMQKQ 756
Query: 580 GFPPFVDPFIKYVS---KSGTSDDAIAFL 605
G P + +S K+G +A A
Sbjct: 757 GMKPSTISYTTMISGLAKAGNIAEAGALF 785
Score = 43.1 bits (100), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 58/264 (21%), Positives = 109/264 (41%), Gaps = 18/264 (6%)
Query: 269 LVKFVVDKLGDEPK--KALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDE 326
L +D G K A FF E +G +K DE +Y +M VL + + +D ++ +
Sbjct: 240 LYNVCIDSFGKVGKVDMAWKFFHEIEANG-LKPDEVTYTSMIGVLCKANRLDEAVEMFEH 298
Query: 327 M-RSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSV---NCCTFLLRKIV 382
+ +++ ++G + EA L E A + PSV NC LRK
Sbjct: 299 LEKNRRVPCTYAYNTMIMG-YGSAGKFDEAYSLLERQRAKGSIPSVIAYNCILTCLRK-- 355
Query: 383 VSKQLDMRLFSKVVRVFRE--NGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFI 440
M + ++VF E + N ++ L G++ ++ +M++ G
Sbjct: 356 ------MGKVDEALKVFEEMKKDAAPNLSTYNILIDMLCRAGKLDTAFELRDSMQKAGLF 409
Query: 441 ASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADC 500
+ + + RL + K DEA + M+ + + SLI G G +D A
Sbjct: 410 PNVRTVNIMVDRLCKSQKLDEACAMFEEMDYKVCTPDEITFCSLIDGLGKVGRVDDAYKV 469
Query: 501 FQKMVEKEGTSHAGYAIDLLVNTY 524
++KM++ + +++ L+ N +
Sbjct: 470 YEKMLDSDCRTNSIVYTSLIKNFF 493
Score = 42.7 bits (99), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 54/256 (21%), Positives = 108/256 (42%), Gaps = 22/256 (8%)
Query: 287 FFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRF 346
F +E G V D +YN + + +++ +++L+EM++KG+E + T V+
Sbjct: 574 LFYSMKEQGCV-LDTRAYNIVIDGFCKCGKVNKAYQLLEEMKTKGFEPTVVTYGSVIDGL 632
Query: 347 SERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRV-------- 398
++ + + EA L+E A + + + +V ++ S +D F KV R+
Sbjct: 633 AKIDRLDEAYMLFEEAKSKRIELNV---------VIYSSLIDG--FGKVGRIDEAYLILE 681
Query: 399 -FRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAG 457
+ G NS+L AL+ + E ++M+E + + L
Sbjct: 682 ELMQKGLTPNLYTWNSLLDALVKAEEINEALVCFQSMKELKCTPNQVTYGILINGLCKVR 741
Query: 458 KKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAI 517
K ++A F M+ G + ++I G AG++ +A F + G +
Sbjct: 742 KFNKAFVFWQEMQKQGMKPSTISYTTMISGLAKAGNIAEAGALFDRFKANGGVPDSA-CY 800
Query: 518 DLLVNTYCSKNRAIDA 533
+ ++ + NRA+DA
Sbjct: 801 NAMIEGLSNGNRAMDA 816
>gi|297789717|ref|XP_002862796.1| hypothetical protein ARALYDRAFT_359368 [Arabidopsis lyrata subsp.
lyrata]
gi|297308523|gb|EFH39054.1| hypothetical protein ARALYDRAFT_359368 [Arabidopsis lyrata subsp.
lyrata]
Length = 378
Score = 88.6 bits (218), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 70/294 (23%), Positives = 129/294 (43%), Gaps = 4/294 (1%)
Query: 236 KVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESG 295
++ + IC V+ + WG E L L + V V+ +L D +A+ +FRW E
Sbjct: 48 QIVNDICNVLETGAWGSSAENALSALFFKPQPEFVIGVLRRLKD-VNRAIEYFRWYERRT 106
Query: 296 FVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEA 355
+ H SYN++ V+ R D ++L EM G+ + TC++++ + N ++E
Sbjct: 107 ELPHCPESYNSLLLVMARCRNFDALDQILGEMSVAGFGPSVNTCIEMVLSCVKANKLREG 166
Query: 356 VDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVL 415
D+ + K +P+ + T L+ DM L + + +E G T + +++
Sbjct: 167 FDVVQNMRKFKFRPAFSAYTTLIGAFSAVNHSDMML--ALFQQMQELGYEPTVHLFTTLI 224
Query: 416 KALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSD 475
+ GR+ +L M+ A + + GK D A +F +EA+G
Sbjct: 225 RGFAKEGRVDSALSLLDEMKSSSLDADIVLYNVCIDSFGKVGKVDMAWKFFHEIEANGLK 284
Query: 476 VGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNR 529
+ + S+I C A LD+A + F+ + EK YA + ++ Y S +
Sbjct: 285 PDEVTYTSMIGVLCKANRLDEAVEMFEHL-EKNRRVPCTYAYNTMIMGYGSAGK 337
>gi|255539196|ref|XP_002510663.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223551364|gb|EEF52850.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 695
Score = 87.0 bits (214), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 118/525 (22%), Positives = 215/525 (40%), Gaps = 45/525 (8%)
Query: 121 LELSGVVFTHEMVLKVLKNLESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLV 180
L+ + F++E++ +L + + + + + L + + LS TYN ++ + +
Sbjct: 144 LQKHNLCFSYELLYSILIH---ALGRSEKLYEAFLLSQQQALSPLTYNALINACARNNDL 200
Query: 181 QEFWGLVDVMKKKGYGVASHVRNKMTEKFEKEGLESDLEKLKGIFATGSIDNSIEKVASR 240
++ L+ M++ GY SD I + N I+ S
Sbjct: 201 EKAINLISRMRQDGY-------------------PSDFVNYSLIIQSLVRSNRID---SP 238
Query: 241 ICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHD 300
I + + S+I D +E L+V SND++ K GD P KA+ F + SG
Sbjct: 239 ILQKLYSEIQCDKLE-----LDVQLSNDIIVGFA-KAGD-PNKAMEFLGMVQASGLSPR- 290
Query: 301 ESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYE 360
++ A+ S LG I + +EM+ G + + +L + + M+K+A E
Sbjct: 291 TATLIAVISALGDSGRIIEAEAIFEEMKDNGLKPKTRAYNGLLKGYVKAGMLKDA----E 346
Query: 361 FAMACKNKPSVNC--CTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKAL 418
F ++ + V+ CT+ L S V++ N + + + +L +
Sbjct: 347 FIVSEMERSGVSPDECTYSLLIDAYSNAGRWESARIVLKEMEANNIMPNSYVFSRILASY 406
Query: 419 ISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGD 478
G + ++LK M+ G + + + D A + D M + G
Sbjct: 407 RDRGEWQKSFQVLKEMKNSGVRPDRHFYNVMIDTFGKFSCLDHAMDTFDKMLSEGIQPDT 466
Query: 479 KMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVH 538
W +LI HC A ++A + F++M+EK G S ++++N++ + R D +
Sbjct: 467 VTWNTLIDCHCKAELHERAEELFEEMMEK-GFSPCVTTFNIMINSFGEQERWDDVKTLMG 525
Query: 539 NCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPP---FVDPFIKYVSKS 595
N +R L P TY LI F DA+ L MK G P + I ++
Sbjct: 526 N-MRSLGLLPNVVTYTTLIDIYGKSGRFSDAIECLEDMKSAGLKPSSTMYNALINAYAQK 584
Query: 596 GTSDDAIAFLKGMTSKRF-PSMSVVLCLFAAFFQARRHSEAQDLL 639
G S+ A+ + M + PS+ + L AF + RR +EA +L
Sbjct: 585 GLSEQAVNAFRLMRADSLKPSLLALNSLINAFGEDRRDAEAFSVL 629
Score = 53.5 bits (127), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 94/487 (19%), Positives = 187/487 (38%), Gaps = 78/487 (16%)
Query: 82 NPMICSYSSEPAMEQKESDFTVVSDIFYKFSDVNDISKQLELSGVVFTHEMVLKVLKNLE 141
+P++ SE ++ E D + +DI F+ D +K +E G+V
Sbjct: 237 SPILQKLYSEIQCDKLELDVQLSNDIIVGFAKAGDPNKAMEFLGMV-------------- 282
Query: 142 SSPDEARRFFNWVLEKESERLSSKTYNLMLRI--VGVHGLVQEFWGLVDVMKKKGYGVAS 199
++ LS +T L+ I +G G + E + + MK G +
Sbjct: 283 ----------------QASGLSPRTATLIAVISALGDSGRIIEAEAIFEEMKDNGLKPKT 326
Query: 200 HVRNKMTEKFEKEGLESDLEKLKGIFATGSIDNSIEKVASRICKVVRSDIWGDD--VERQ 257
N + + + K G+ D E + + + I + W V ++
Sbjct: 327 RAYNGLLKGYVKAGMLKDAEFIVSEMERSGVSPDECTYSLLIDAYSNAGRWESARIVLKE 386
Query: 258 LRDLNVTFSNDLVKFVVDKLGD--EPKKALIFFRWAEESGFVKHDESSYNAMASVLGRED 315
+ N+ ++ + ++ D E +K+ + + SG V+ D YN M G+
Sbjct: 387 MEANNIMPNSYVFSRILASYRDRGEWQKSFQVLKEMKNSG-VRPDRHFYNVMIDTFGKFS 445
Query: 316 CIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCT 375
C+D D+M S+G + + T ++ + + + A +L+E M
Sbjct: 446 CLDHAMDTFDKMLSEGIQPDTVTWNTLIDCHCKAELHERAEELFEEMME----------- 494
Query: 376 FLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAME 435
+ FS V F + M+NS + R + ++ M
Sbjct: 495 --------------KGFSPCVTTF--------NIMINSFGEQ----ERWDDVKTLMGNMR 528
Query: 436 EGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLD 495
G + + + + +G+ +A E ++ M+++G M+ +LI + G +
Sbjct: 529 SLGLLPNVVTYTTLIDIYGKSGRFSDAIECLEDMKSAGLKPSSTMYNALINAYAQKGLSE 588
Query: 496 KAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKF-VHNCVREYDLKPWHTTYE 554
+A + F +++ + + A++ L+N + R DA F V ++E DLKP TY
Sbjct: 589 QAVNAF-RLMRADSLKPSLLALNSLINAFGEDRR--DAEAFSVLKYMKENDLKPDVVTYT 645
Query: 555 ELIKNLL 561
L+K L+
Sbjct: 646 TLMKALI 652
>gi|225430658|ref|XP_002268375.1| PREDICTED: pentatricopeptide repeat-containing protein At5g18390,
mitochondrial [Vitis vinifera]
gi|296085168|emb|CBI28663.3| unnamed protein product [Vitis vinifera]
Length = 454
Score = 86.7 bits (213), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 88/391 (22%), Positives = 154/391 (39%), Gaps = 27/391 (6%)
Query: 237 VASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGF 296
V I +VR D + +ER L L ++ ++DLV V+ + ++L FF WA
Sbjct: 49 VVHHISAIVRRDFY---LERTLNKLPISVTSDLVYRVLRSCPNSGTESLRFFNWARSHLS 105
Query: 297 VKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAV 356
+ Y + L R WK+ +M++ + ++ F + +V +AV
Sbjct: 106 YQPTTLEYEELLKTLARTKQFQPMWKIAHQMQT----LSPTVVSSIIEEFGKHGLVDQAV 161
Query: 357 DLYEFAMACKNKPSV----NCCTFLLRKIVV---SKQLDMRLFSKVVRVFRENGNVLTDA 409
+++ A + N P N F L ++ + L R+ K V ++ +VL +
Sbjct: 162 EVFNKAKSALNCPQTIEVYNSLLFALCEVKYFHGAYALIRRMIRKGVTPNKQTYSVLVNG 221
Query: 410 MLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHM 469
+ G+M E L+ M GF + + L +AG + A E + M
Sbjct: 222 W--------CAAGKMKEAQDFLEEMSRKGFNPPVRGRDLLVDGLLNAGYLEAAKEMVRKM 273
Query: 470 EASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNR 529
G + S+++ C AG+ + D + V + G S +++ C + R
Sbjct: 274 TKEGCAPDVETLNSMLEAICKAGEAEFCIDIYND-VCRLGVSPNVGTYKIMIPAACKEGR 332
Query: 530 AIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFP---PFVD 586
+A + +H + E +P+ + Y +IK L F DA MK G P P
Sbjct: 333 IDEAFRILHRSI-EDGHRPFPSLYAPIIKALCRNGQFDDAFCFFSDMKVKGHPPNRPVYT 391
Query: 587 PFIKYVSKSGTSDDAIAFLKGMTSKRFPSMS 617
I + G DA +L MT +S
Sbjct: 392 MLITMCGRGGRFVDAANYLVEMTELNLTPIS 422
Score = 40.4 bits (93), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 55/130 (42%), Gaps = 4/130 (3%)
Query: 85 ICSYSSEPAMEQKESDFTVVSDIFYKFSDVNDISKQLELSGVVFTHEMVLKVLKNLESSP 144
I ++ +K+ F VV I + + L + T ++V +VL++ +S
Sbjct: 31 ITTHLQNTITSKKDDYFAVVHHISAIVRRDFYLERTLNKLPISVTSDLVYRVLRSCPNSG 90
Query: 145 DEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRNK 204
E+ RFFNW S + ++ Y +L+ + Q W + M+ V S +
Sbjct: 91 TESLRFFNWARSHLSYQPTTLEYEELLKTLARTKQFQPMWKIAHQMQTLSPTVVSSI--- 147
Query: 205 MTEKFEKEGL 214
E+F K GL
Sbjct: 148 -IEEFGKHGL 156
>gi|125538899|gb|EAY85294.1| hypothetical protein OsI_06665 [Oryza sativa Indica Group]
Length = 632
Score = 86.7 bits (213), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 108/434 (24%), Positives = 184/434 (42%), Gaps = 46/434 (10%)
Query: 232 NSIEKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDK-LGDEPKKALIFFRW 290
NS+ + R ++++ WG D ER L L + + LV+ V+ +G K + FFRW
Sbjct: 55 NSVRVLDERFIRILKIFKWGPDAERALEVLMLRVDHWLVREVMKTDVGVNVK--MQFFRW 112
Query: 291 AEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEM-RSK---GYEMEMETCVKVLGRF 346
A + +HD S+Y A+ L + WK++ EM RS ME+ +++LG
Sbjct: 113 AAKKRNYQHDTSTYMALIHCLELVEQYGEMWKMIQEMVRSPICVVTPMELSQVIRMLG-- 170
Query: 347 SERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRE---NG 403
M+ +A+ ++ A K +P+ ++ ++ Q + KV ++ E G
Sbjct: 171 -NAKMIGKAITIFYQIKARKCQPTAQAYNSMIIMLIHEGQ-----YEKVHELYNEMSNEG 224
Query: 404 NVLTDAMLNSVL-KALISVGRMGECNKILKAMEEGGFIASSNMKSKIA---FRLSSAGKK 459
+ D + S L A +GR ++L M+E G ++ + + I F+L +
Sbjct: 225 HCQPDTVTYSALISAFCKLGRQDSAIRLLNEMKENGMQPTAKIYTMIISLFFKLDNVHGA 284
Query: 460 DEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDL 519
E M +M DV + LI+G AG +D+A + +M ++EG ++
Sbjct: 285 LSLFEEMRYMYCR-PDVFT--YTELIRGLGKAGRIDEAYHFYHEM-QREGCKPDTVVMNN 340
Query: 520 LVNTYCSKNRAIDACKF-----VHNCVREYDLKPWHTTYEELIKNLLVQRG-FKDALSLL 573
++N R D K V +C+ P TY +IK L + + S
Sbjct: 341 MINFLGKAGRLDDGLKLFEEMGVSHCI------PNVVTYNTIIKALFESKSRVSEVFSWF 394
Query: 574 CLMKDHGFPPFVDPF-----IKYVSKSGTSDDAIAFLKGMTSKRFPSMSVVLC-LFAAFF 627
MK G P PF I K+ + A+ L+ M K FP C L A
Sbjct: 395 ERMKGSGISP--SPFTYSILIDGFCKTNRIEKAMMLLEEMDEKGFPPCPAAYCSLIDALG 452
Query: 628 QARRHSEAQDLLSK 641
+A+R+ A +L +
Sbjct: 453 KAKRYDLACELFQE 466
Score = 38.9 bits (89), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 61/320 (19%), Positives = 125/320 (39%), Gaps = 22/320 (6%)
Query: 166 TYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRNKMTEKFEKEGLESDLEKL---- 221
TY ++R +G G + E + M+++G + V N M K G D KL
Sbjct: 302 TYTELIRGLGKAGRIDEAYHFYHEMQREGCKPDTVVMNNMINFLGKAGRLDDGLKLFEEM 361
Query: 222 ------KGIFATGSIDNSIEKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVD 275
+ +I ++ + SR+ +V W + +++ ++ S ++D
Sbjct: 362 GVSHCIPNVVTYNTIIKALFESKSRVSEVFS---WFE----RMKGSGISPSPFTYSILID 414
Query: 276 KL--GDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYE 333
+ +KA++ +E GF ++Y ++ LG+ D ++ E++
Sbjct: 415 GFCKTNRIEKAMMLLEEMDEKGFPPCP-AAYCSLIDALGKAKRYDLACELFQELKENCGS 473
Query: 334 MEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFS 393
++ + + +A++L++ P+V L+ + + LD L +
Sbjct: 474 SSARVYAVMIKHLGKAGRLDDAINLFDEMSKLGCTPNVYAYNALMSGLARACMLDEALTT 533
Query: 394 KVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRL 453
+R +E+G + N +L L G ++L M+ + + + L
Sbjct: 534 --MRKMQEHGCLPDINSYNIILNGLAKTGGPHRAMEMLTNMKNSTIKPDAVSYNTVLSAL 591
Query: 454 SSAGKKDEANEFMDHMEASG 473
S AG +EA E M M A G
Sbjct: 592 SHAGMFEEAAELMKEMNALG 611
>gi|224058846|ref|XP_002299640.1| predicted protein [Populus trichocarpa]
gi|222846898|gb|EEE84445.1| predicted protein [Populus trichocarpa]
Length = 609
Score = 85.9 bits (211), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 105/429 (24%), Positives = 183/429 (42%), Gaps = 39/429 (9%)
Query: 231 DNSIEKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRW 290
D S+ + R ++++ WG D E+ L L + + LV+ V+ K+ E + FF+W
Sbjct: 26 DPSVRTLDERFIRILKIFKWGPDAEKALEVLKLKVDHRLVREVL-KIDVEINVKIQFFKW 84
Query: 291 AEESGFVKHDESSYNAMASVLGREDC--IDRFWKVLDEM-RSKGYEM---EMETCVKVLG 344
A + +HD ++Y + L +DC WK++ EM RS + ++ VK+LG
Sbjct: 85 AGKRRNFEHDLTTYMPLIRCL--DDCGLFGEMWKMIQEMVRSPTCVIGPADLSEVVKILG 142
Query: 345 RFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRE--- 401
+ MV +A+ ++ + K KP+ + ++ ++ K+ ++ E
Sbjct: 143 K---AKMVNKALSVFYQIKSRKCKPTASTYNSMILMLMQEGH-----HEKIHELYHEMCN 194
Query: 402 NGNVLTDAMLNSVL-KALISVGRMGECNKILKAMEEGGFIASSNMKSK-IAFRLSSAGKK 459
G+ D M SVL A + +GR ++ M+ G ++ + + +A S +K
Sbjct: 195 EGDCFPDTMTYSVLVSAFVKLGRDDYAIRLFDEMKANGLHPTAKIYTTLLAIYFKSGDEK 254
Query: 460 DEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDL 519
A + M+ G + LIKG +G ++ A F M+ K+G I+
Sbjct: 255 --ALGLVQEMKDKGCAPTVFTYTELIKGLGKSGRVEDAYSVFLNML-KDGCKPDVVLINN 311
Query: 520 LVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRG-FKDALSLLCLMKD 578
L+N + R DA K +R P TY +IK L + +A S MK
Sbjct: 312 LINIFGKAGRLEDALKLFDQ-MRSLKCAPNVVTYNTVIKALFESKAPASEAASWFEKMKA 370
Query: 579 HGFPP-------FVDPFIKYVSKSGTSDDAIAFLKGMTSKRFPSMSVVLC-LFAAFFQAR 630
+G P +D F K+ + A+ L+ M K FP C L A +A+
Sbjct: 371 NGVTPSSFTYSILIDGF----CKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINALGKAK 426
Query: 631 RHSEAQDLL 639
R+ A +L
Sbjct: 427 RYEAANELF 435
>gi|359477281|ref|XP_003631958.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g06920-like [Vitis vinifera]
Length = 898
Score = 85.1 bits (209), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 87/408 (21%), Positives = 174/408 (42%), Gaps = 8/408 (1%)
Query: 231 DNSIEKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRW 290
+ I K +C ++ S WG +E L L +LV V+ +L D A+ +F+W
Sbjct: 56 NEGIRKGVDDVCCILESGPWGPTLENSLSALGEKPLPELVIGVLKRLKD-ANTAVNYFQW 114
Query: 291 AEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERN 350
AE+ H +YN++ V+ R D ++L+EM G+ ++++ +
Sbjct: 115 AEKQTEKVHCPEAYNSLLMVMARNTEFDHLERILEEMSLSGFGPSSNISIELVANCVKSR 174
Query: 351 MVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAM 410
++EA D+ + K +P+ + T L+ + ++ D L + +E G + +
Sbjct: 175 KLREAFDIIQTMRKFKFRPAFSAYTILIGALSEVREPDPMLI--LFHQMQELGYEVNVHL 232
Query: 411 LNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHME 470
++++ GR+ +L M+ A + + AGK D + +F M+
Sbjct: 233 FTTLIRVFAREGRVDAALSLLDEMKSNSLDADIVLYNVCIDCFGKAGKVDMSWKFFHEMK 292
Query: 471 ASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRA 530
+ G D + S+I C A LD+A + F+++ E+ YA + ++ Y S +
Sbjct: 293 SHGLMPDDVTYTSMIGVLCKANRLDEAVELFEQL-EQNRKVPCAYAYNTMIMGYGSAGKF 351
Query: 531 IDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFP--PFVDPF 588
+A + + + P Y ++ L +R ++AL + MK P P +
Sbjct: 352 DEAYGLLERQKAKGSI-PSVIAYNCILTCLGKKRRVEEALRIFEEMKRDAVPNVPTYNIL 410
Query: 589 IKYVSKSGTSDDAIAFLKGMT-SKRFPSMSVVLCLFAAFFQARRHSEA 635
I + + G + A+ M + FP++ V + +A++ EA
Sbjct: 411 IDMLCREGKLNAALEIRDDMERAGLFPNVLTVNIMIDRLCKAQKLEEA 458
Score = 48.5 bits (114), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 75/332 (22%), Positives = 134/332 (40%), Gaps = 32/332 (9%)
Query: 303 SYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFA 362
+YN M G D + +L+ ++KG + +L ++ V+EA+ ++E
Sbjct: 337 AYNTMIMGYGSAGKFDEAYGLLERQKAKGSIPSVIAYNCILTCLGKKRRVEEALRIFEEM 396
Query: 363 M--ACKNKPSVNCCT-FLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALI 419
A N P+ N L R+ ++ L++R + +F NVLT +N ++ L
Sbjct: 397 KRDAVPNVPTYNILIDMLCREGKLNAALEIRDDMERAGLFP---NVLT---VNIMIDRLC 450
Query: 420 SVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDK 479
++ E I + M++ ++ S + L G+ D+A + M G G
Sbjct: 451 KAQKLEEACSIFEGMDDKVCTPNAVTFSSLIDGLGKCGRVDDAYSLYEKMLDCGHVPGAI 510
Query: 480 MWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDL-LVNTYCS---KNRAIDACK 535
++ SLI+ G + +++MV H G + DL L+NTY K + +
Sbjct: 511 VYTSLIRSFFKCGRKEDGHKIYKEMV------HTGCSPDLTLINTYMDCVFKAGETEKGR 564
Query: 536 FVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLL--------CLMKDHGFPPFVDP 587
+ + + P +Y LI LV+ G + L C++ H + +D
Sbjct: 565 ALFREINAHGFIPDARSYSILIHG-LVKAGLANETYELFYAMKEQGCVLDTHAYNAVIDG 623
Query: 588 FIKYVSKSGTSDDAIAFLKGMTSKRFPSMSVV 619
F KSG + A L+ M K P V
Sbjct: 624 F----CKSGKVNKAYQLLEEMKVKGHPPTVVT 651
Score = 43.5 bits (101), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 41/195 (21%), Positives = 80/195 (41%), Gaps = 2/195 (1%)
Query: 399 FRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGK 458
+E G VL N+V+ G++ + ++L+ M+ G + + L+ +
Sbjct: 605 MKEQGCVLDTHAYNAVIDGFCKSGKVNKAYQLLEEMKVKGHPPTVVTYGSVIDGLAKIDR 664
Query: 459 KDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAID 518
DEA + +++G + ++ SLI G G +D+A +++++K G + Y +
Sbjct: 665 LDEAYMLFEEAKSNGIKLNVVVYSSLIDGFGKVGRIDEAYLIMEELMQK-GLTPNVYTWN 723
Query: 519 LLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKD 578
L++ K I+ +++ P TY LI L R F A M+
Sbjct: 724 CLLDALV-KAEEINEALICFQSMKDLKCPPNQITYSILINGLCRVRKFNKAFVFWQEMQK 782
Query: 579 HGFPPFVDPFIKYVS 593
G P + +S
Sbjct: 783 LGLKPNTITYTTMIS 797
Score = 42.4 bits (98), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 68/331 (20%), Positives = 118/331 (35%), Gaps = 45/331 (13%)
Query: 280 EPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETC 339
E +K FR GF+ D SY+ + L + + +++ M+ +G ++
Sbjct: 559 ETEKGRALFREINAHGFIP-DARSYSILIHGLVKAGLANETYELFYAMKEQGCVLDTHAY 617
Query: 340 VKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVF 399
V+ F + V +A L E M K P
Sbjct: 618 NAVIDGFCKSGKVNKAYQLLE-EMKVKGHPP----------------------------- 647
Query: 400 RENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKK 459
T SV+ L + R+ E + + + G + + S + G+
Sbjct: 648 -------TVVTYGSVIDGLAKIDRLDEAYMLFEEAKSNGIKLNVVVYSSLIDGFGKVGRI 700
Query: 460 DEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVE-KEGTSHAGYAID 518
DEA M+ + G W L+ A ++++A CFQ M + K + Y+I
Sbjct: 701 DEAYLIMEELMQKGLTPNVYTWNCLLDALVKAEEINEALICFQSMKDLKCPPNQITYSI- 759
Query: 519 LLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKD 578
L+N C + A F +++ LKP TY +I L +A L K
Sbjct: 760 -LINGLCRVRKFNKAFVFWQE-MQKLGLKPNTITYTTMISGLAKAGNILEASGLFSRFKA 817
Query: 579 HGFPP---FVDPFIKYVSKSGTSDDAIAFLK 606
+G P + I+ +S + + DA A +
Sbjct: 818 NGGIPDSASYNAMIEGLSSANKAMDAYALFE 848
>gi|225424178|ref|XP_002280443.1| PREDICTED: pentatricopeptide repeat-containing protein At1g71060,
mitochondrial [Vitis vinifera]
Length = 531
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 85/347 (24%), Positives = 157/347 (45%), Gaps = 12/347 (3%)
Query: 226 ATGSIDNSIEKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKAL 285
T + ++ I + ++CK++ + +E L +V S LV V+ KL + AL
Sbjct: 71 TTDATNHHIAQDTGKLCKLLCTH-SNSSIESLLNGASVDVSPTLVLEVLKKLSNSGVIAL 129
Query: 286 IFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGR 345
FFRWAE+ K+ +YNA+ LG+ W ++++MRSKG + ET + R
Sbjct: 130 SFFRWAEKQKGFKYSTENYNALIEALGKIKQFKMIWNLVNDMRSKGL-LTQETFALISRR 188
Query: 346 FSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLD--MRLFSKVV-RVFREN 402
++ VKEAV+ +E +P ++ LL + S+ ++ +F K+ R FR +
Sbjct: 189 YARARKVKEAVETFEKMEKFGLQPVLSDFNRLLDALCKSRHVERAQEVFDKMKDRKFRPD 248
Query: 403 GNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEA 462
T +L+ + +++ + M++ GF + + A + D A
Sbjct: 249 IKSYT-----ILLEGWGQEQNLLRLDEVYREMKDEGFEPDAVTYGILINAHCKARRYDAA 303
Query: 463 NEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVN 522
E MEA+ ++ +LI G L +A F++ + G + + +V
Sbjct: 304 VELFHKMEANKCMPTPHIYCTLINGLGSERRLTEALQFFER-SKASGFTPEAPTYNAVVG 362
Query: 523 TYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDA 569
+YC R DA + V +R+ + P TY+ ++ +L+ R K+A
Sbjct: 363 SYCQSMRMDDAYRIVDE-MRKCGVGPQTRTYDIILHHLIKARRTKEA 408
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 98/466 (21%), Positives = 187/466 (40%), Gaps = 51/466 (10%)
Query: 115 NDISKQLELSGVVFTHEMVLKVLKNLESSPDEARRFFNWVLEKESERLSSKTYNLMLRIV 174
+ I L + V + +VL+VLK L +S A FF W +++ + S++ YN ++ +
Sbjct: 96 SSIESLLNGASVDVSPTLVLEVLKKLSNSGVIALSFFRWAEKQKGFKYSTENYNALIEAL 155
Query: 175 GVHGLVQEFWGLVDVMKKKGY----GVASHVRNKMTEKFEKEGLESDLEKLKGIFATGSI 230
G + W LV+ M+ KG A R + KE +E+ EK++ F +
Sbjct: 156 GKIKQFKMIWNLVNDMRSKGLLTQETFALISRRYARARKVKEAVET-FEKMEK-FGLQPV 213
Query: 231 DNSIEKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRW 290
+ ++ +CK VER + V DK+ D
Sbjct: 214 LSDFNRLLDALCK-------SRHVER-------------AQEVFDKMKDRK--------- 244
Query: 291 AEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERN 350
+ D SY + G+E + R +V EM+ +G+E + T ++ +
Sbjct: 245 ------FRPDIKSYTILLEGWGQEQNLLRLDEVYREMKDEGFEPDAVTYGILINAHCKAR 298
Query: 351 MVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLD--MRLFSKVVRVFRENGNVLTD 408
AV+L+ A K P+ + L+ + ++L ++ F + + +G
Sbjct: 299 RYDAAVELFHKMEANKCMPTPHIYCTLINGLGSERRLTEALQFFERS----KASGFTPEA 354
Query: 409 AMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDH 468
N+V+ + RM + +I+ M + G + I L A + EA
Sbjct: 355 PTYNAVVGSYCQSMRMDDAYRIVDEMRKCGVGPQTRTYDIILHHLIKARRTKEAYRVFQG 414
Query: 469 MEAS-GSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSK 527
M + G + + +++ C +D A + +M K G + L+N+ C +
Sbjct: 415 MSSEPGCEPSVSTYEIVVRMFCNEERVDMALRVWDEMKAK-GVLPGMHMFSTLINSLCYE 473
Query: 528 NRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLL 573
N+ +ACK+ H + + ++P + L K L+ G +D + +L
Sbjct: 474 NKLDEACKYFHEML-DMGIRPPAAMFSNL-KQTLLDEGKQDMVLIL 517
>gi|356549210|ref|XP_003542990.1| PREDICTED: pentatricopeptide repeat-containing protein At3g62470,
mitochondrial-like [Glycine max]
Length = 648
Score = 84.0 bits (206), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 87/352 (24%), Positives = 147/352 (41%), Gaps = 11/352 (3%)
Query: 240 RICKVVRSDIWGD-DVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVK 298
R+CKV+ D ++E L + V S+DLV V+ + K A FF WA +
Sbjct: 176 RVCKVIDELFALDRNMEVVLDECGVRLSHDLVVDVLQRFKHARKPAFRFFCWAGKRPGFA 235
Query: 299 HDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDL 358
HD +YN M VLGR + +L+EM KG + MET + F+E K+AV +
Sbjct: 236 HDSRTYNFMMCVLGRTRQFETMVAMLEEMGEKGL-LTMETFSIAIKAFAEAKQRKKAVGI 294
Query: 359 YEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAM--LNSVLK 416
++ K V+ FLL + +K L + VF + + T ++ +L
Sbjct: 295 FDLMKKYGFKVGVDVINFLLDSLSTAK-----LGKEAQAVFEKLKDRFTPSLQTYTILLS 349
Query: 417 ALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDV 476
+ + E ++ M + GF + + L KK +A + + M+A G
Sbjct: 350 GWCRLKNLLEAGRVWNEMIDRGFNPDVVAHNVMLEGLLKCKKKSDAIKLFEIMKAKGPSP 409
Query: 477 GDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKF 536
+ + +I+ C + +A + F MV++ A L+ T + + +D
Sbjct: 410 NVRSYTIMIQDFCKQKLMGEAIEYFDVMVDRGCQPDAALYTCLI--TGFGRQKKMDMVYS 467
Query: 537 VHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPF 588
+ +RE P TY LIK + Q DA+ + M G P + +
Sbjct: 468 LLKEMRERGCPPDGRTYNALIKLMTSQHMPDDAVRIYKKMIQSGIKPTIHTY 519
Score = 65.5 bits (158), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 87/412 (21%), Positives = 161/412 (39%), Gaps = 81/412 (19%)
Query: 121 LELSGVVFTHEMVLKVLKNLESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVG----- 175
L+ GV +H++V+ VL+ + + A RFF W ++ S+TYN M+ ++G
Sbjct: 195 LDECGVRLSHDLVVDVLQRFKHARKPAFRFFCWAGKRPGFAHDSRTYNFMMCVLGRTRQF 254
Query: 176 --VHGLVQEFW---------------------------GLVDVMKKKGYGVASHVRNKM- 205
+ +++E G+ D+MKK G+ V V N +
Sbjct: 255 ETMVAMLEEMGEKGLLTMETFSIAIKAFAEAKQRKKAVGIFDLMKKYGFKVGVDVINFLL 314
Query: 206 ----TEKFEKEGLESDLEKLKGIFATGSIDNSIEKVASRICKVVR----SDIWGDDVERQ 257
T K KE ++ EKLK F +I + S C++ +W + ++R
Sbjct: 315 DSLSTAKLGKEA-QAVFEKLKDRFTPSLQTYTI--LLSGWCRLKNLLEAGRVWNEMIDRG 371
Query: 258 LRD------------LNVTFSNDLVKF--VVDKLGDEPK------------------KAL 285
L +D +K ++ G P +A+
Sbjct: 372 FNPDVVAHNVMLEGLLKCKKKSDAIKLFEIMKAKGPSPNVRSYTIMIQDFCKQKLMGEAI 431
Query: 286 IFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGR 345
+F + G + D + Y + + GR+ +D + +L EMR +G + T ++
Sbjct: 432 EYFDVMVDRG-CQPDAALYTCLITGFGRQKKMDMVYSLLKEMRERGCPPDGRTYNALIKL 490
Query: 346 FSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNV 405
+ ++M +AV +Y+ + KP+++ +++ V+K +M ++ + G
Sbjct: 491 MTSQHMPDDAVRIYKKMIQSGIKPTIHTYNMIMKSYFVTKNYEMG--HEIWDEMHQKGCC 548
Query: 406 LTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAG 457
D + LI R GE K L+ M E G A +K A +S G
Sbjct: 549 PDDNSYIVYIGGLIRQDRSGEACKYLEEMLEKGMKAPKLDYNKFASDISKTG 600
>gi|449469499|ref|XP_004152457.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74900,
mitochondrial-like [Cucumis sativus]
gi|449487784|ref|XP_004157799.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74900,
mitochondrial-like [Cucumis sativus]
Length = 502
Score = 83.6 bits (205), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 90/385 (23%), Positives = 163/385 (42%), Gaps = 18/385 (4%)
Query: 258 LRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCI 317
L L + F+ +LV V+ +L KAL FF+ E H SS++ + GR
Sbjct: 69 LHGLQLQFTPELVDKVLKRLWFHGPKALQFFKHLEYHPSYAHSASSFDHAIDIAGRMRDY 128
Query: 318 DRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPS-VNCCTF 376
W ++ MR++ +T + RF A+ ++ +M P ++
Sbjct: 129 KTVWALVARMRARRIGPSSKTFAIIAERFVAAGKPDRAIKVF-LSMREHGCPQDLHSFNT 187
Query: 377 LLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAM-LNSVLKALISVGRMGECNKILKAME 435
+L + SK+++M ++ + +V R G D + N + + R + ++LK M
Sbjct: 188 ILDILCKSKRVEM-AYNNLFKVLR--GKFKADVVSYNIIANGWCLIKRTPKALEVLKEMV 244
Query: 436 EGGF---IASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAG 492
E G I + N+ K FR AG+ EA EF M+ ++ + +++ G V G
Sbjct: 245 ERGLTPTITTYNILLKGYFR---AGQLKEAWEFFLQMKEREVEIDVVTYTTMVHGFGVVG 301
Query: 493 DLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTT 552
++ +A F +MV EG + + ++ C K+ +A V++ P TT
Sbjct: 302 EIKRARKVFNEMV-GEGILPSTATYNAMIQVLCKKDSVENAVLMFEEMVKK-GYVPNLTT 359
Query: 553 YEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPF---IKYVSKSGTSDDAIAFLKGMT 609
Y +I+ L A+ + MK G P V + I+Y +G + ++ + M
Sbjct: 360 YNVVIRGLFHAGNMDKAMEFIERMKTDGCEPNVQTYNVAIRYFCDAGDVEKGLSMFEKMG 419
Query: 610 SKRFPSMSVVLCLFAAFFQARRHSE 634
P++ L +A F R+ SE
Sbjct: 420 QGSLPNLDTYNVLISAMF-VRKKSE 443
Score = 56.6 bits (135), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 82/400 (20%), Positives = 160/400 (40%), Gaps = 48/400 (12%)
Query: 112 SDVNDISKQLELSGVVFTHEMVLKVLKNLESSPDEARRFFNWVLEKESERLSSKTYNLML 171
SD + L + FT E+V KVLK L +A +FF + S S+ +++ +
Sbjct: 60 SDPKSLRGSLHGLQLQFTPELVDKVLKRLWFHGPKALQFFKHLEYHPSYAHSASSFDHAI 119
Query: 172 RIVGVHGLVQEFWGLVDVMKKKGYGVASHVRNKMTEKFEKEG-LESDLEKLKGIFATGSI 230
I G + W LV M+ + G +S + E+F G + ++ + G
Sbjct: 120 DIAGRMRDYKTVWALVARMRARRIGPSSKTFAIIAERFVAAGKPDRAIKVFLSMREHGCP 179
Query: 231 DN--SIEKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLG----DEPKKA 284
+ S + +CK R ++ +++ + LR F D+V + + G KA
Sbjct: 180 QDLHSFNTILDILCKSKRVEMAYNNLFKVLRG---KFKADVVSYNIIANGWCLIKRTPKA 236
Query: 285 LIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLG 344
L + E G ++YN + R + W+ +M+ + E+++ T ++
Sbjct: 237 LEVLKEMVERGLTP-TITTYNILLKGYFRAGQLKEAWEFFLQMKEREVEIDVVTYTTMVH 295
Query: 345 RFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGN 404
F +K A RK+ F+++V G
Sbjct: 296 GFGVVGEIKRA-----------------------RKV----------FNEMV----GEGI 318
Query: 405 VLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANE 464
+ + A N++++ L + + + M + G++ + + + L AG D+A E
Sbjct: 319 LPSTATYNAMIQVLCKKDSVENAVLMFEEMVKKGYVPNLTTYNVVIRGLFHAGNMDKAME 378
Query: 465 FMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKM 504
F++ M+ G + + + I+ C AGD++K F+KM
Sbjct: 379 FIERMKTDGCEPNVQTYNVAIRYFCDAGDVEKGLSMFEKM 418
>gi|115445449|ref|NP_001046504.1| Os02g0266200 [Oryza sativa Japonica Group]
gi|50251963|dbj|BAD27898.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|113536035|dbj|BAF08418.1| Os02g0266200 [Oryza sativa Japonica Group]
gi|125581581|gb|EAZ22512.1| hypothetical protein OsJ_06176 [Oryza sativa Japonica Group]
gi|215704610|dbj|BAG94238.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737116|dbj|BAG96045.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 632
Score = 83.2 bits (204), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 107/434 (24%), Positives = 183/434 (42%), Gaps = 46/434 (10%)
Query: 232 NSIEKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDK-LGDEPKKALIFFRW 290
NS+ + R ++++ WG D ER L L + + LV+ V+ +G K + FFRW
Sbjct: 55 NSVRVLDERFIRILKIFKWGPDAERALEVLMLRVDHWLVREVMKTDVGVNVK--MQFFRW 112
Query: 291 AEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEM-RSK---GYEMEMETCVKVLGRF 346
A + +HD S+Y A+ L + WK++ EM RS ME+ +++LG
Sbjct: 113 AAKKRNYQHDTSTYMALIHCLELVEQYGEMWKMIQEMVRSPICVVTPMELSQVIRMLG-- 170
Query: 347 SERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRE---NG 403
M+ +A+ ++ A K +P+ ++ ++ Q + KV ++ E G
Sbjct: 171 -NAKMIGKAITIFYQIKARKCQPTAQAYNSMIIMLIHEGQ-----YEKVHELYNEMSNEG 224
Query: 404 NVLTDAMLNSVL-KALISVGRMGECNKILKAMEEGGFIASSNMKSKIA---FRLSSAGKK 459
+ D + S L A +GR ++L M+E G ++ + + I F+L +
Sbjct: 225 HCHPDTVTYSALISAFCKLGRQDSAIRLLNEMKENGMQPTAKIYTMIISLFFKLDNVHGA 284
Query: 460 DEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDL 519
E M +M DV + LI+G AG +D+A + +M ++E ++
Sbjct: 285 LSLFEEMRYMYCR-PDVFT--YTELIRGLGKAGRIDEAYHFYHEM-QREDCKPDTVVMNN 340
Query: 520 LVNTYCSKNRAIDACKF-----VHNCVREYDLKPWHTTYEELIKNLLVQRG-FKDALSLL 573
++N R D K V +C+ P TY +IK L + + S
Sbjct: 341 MINFLGKAGRLDDGLKLFEEMGVSHCI------PNVVTYNTIIKALFESKSRVSEVFSWF 394
Query: 574 CLMKDHGFPPFVDPF-----IKYVSKSGTSDDAIAFLKGMTSKRFPSMSVVLC-LFAAFF 627
MK G P PF I K+ + A+ L+ M K FP C L A
Sbjct: 395 ERMKGSGISP--SPFTYSILIDGFCKTNRIEKAMMLLEEMDEKGFPPCPAAYCSLIDALG 452
Query: 628 QARRHSEAQDLLSK 641
+A+R+ A +L +
Sbjct: 453 KAKRYDLACELFQE 466
>gi|357454999|ref|XP_003597780.1| Beta-D-galactosidase [Medicago truncatula]
gi|357455013|ref|XP_003597787.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355486828|gb|AES68031.1| Beta-D-galactosidase [Medicago truncatula]
gi|355486835|gb|AES68038.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 639
Score = 82.4 bits (202), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 94/427 (22%), Positives = 176/427 (41%), Gaps = 31/427 (7%)
Query: 231 DNSIEKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRW 290
D + K+ R ++++ WG D E+ L L + LV+ V+ K+ E + FF+W
Sbjct: 56 DPNARKLDERFIRILKIFKWGPDAEKALEVLKLKLDIRLVREVL-KIDVEVHVKIQFFKW 114
Query: 291 AEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEM---EMETCVKVLGRFS 347
A + +HD ++Y A+ L + W+ + +M + E+ VK+LGR
Sbjct: 115 AGKKRNFEHDSTTYMALIRCLDENRLVGELWRTIQDMVKSPCAIGPSELSEIVKILGRVK 174
Query: 348 ERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRE---NGN 404
MV +A+ ++ K +P+ ++ ++ KV ++ E G+
Sbjct: 175 ---MVNKALSIFYQVKGRKCRPTAGTYNSVILMLMQEGH-----HEKVHELYNEMCSEGH 226
Query: 405 VLTDAMLNSVL-KALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEAN 463
D + S L A + R ++ M+E G ++ + + + GK +EA
Sbjct: 227 CFPDTVTYSALISAFGKLNRDDSAVRLFDEMKENGLQPTAKIYTTLMGIYFKLGKVEEAL 286
Query: 464 EFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNT 523
+ M + LI+G +G ++ A ++ M+ K+G ++ L+N
Sbjct: 287 NLVHEMRMRRCVPTVYTYTELIRGLGKSGRVEDAYGVYKNML-KDGCKPDVVLMNNLINI 345
Query: 524 YCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRG-FKDALSLLCLMKDHGFP 582
+R +A + +R + P TY +IK+L + +A S L MK G
Sbjct: 346 LGRSDRLKEAVELFEE-MRLLNCTPNVVTYNTIIKSLFEDKAPPSEASSWLERMKKDGVV 404
Query: 583 P-------FVDPFIKYVSKSGTSDDAIAFLKGMTSKRFPSMSVVLC-LFAAFFQARRHSE 634
P +D F K+ + A+ L+ M K FP C L + +A+R+
Sbjct: 405 PSSFTYSILIDGF----CKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINSLGKAKRYEA 460
Query: 635 AQDLLSK 641
A +L +
Sbjct: 461 ANELFQE 467
Score = 48.5 bits (114), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 123/607 (20%), Positives = 235/607 (38%), Gaps = 90/607 (14%)
Query: 50 TSSHTFYSRFSRLPICYSRLINLIDPKNPNFRNPMICS--YSSEPAMEQKESDFTVVSDI 107
++S F R + ++ L D + N PM +P + + F + I
Sbjct: 13 STSTPFTQRLKQTENEIVKMFRLPDSQEENHYVPMEGRRVLRKDPNARKLDERFIRILKI 72
Query: 108 FYKFSDVNDISKQLELSGVVFTHEMVLKVLKNLESSPDEARRFFNWVLEKESERLSSKTY 167
F K+ D K LE+ + +V +VLK ++ +FF W +K + S TY
Sbjct: 73 F-KWGP--DAEKALEVLKLKLDIRLVREVLK-IDVEVHVKIQFFKWAGKKRNFEHDSTTY 128
Query: 168 NLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRNKMTEKFEKEGLESDLEKLKGIFAT 227
++R + + LV E W + M K + S+L
Sbjct: 129 MALIRCLDENRLVGELWRTIQDMVKSPCAIGP----------------SEL--------- 163
Query: 228 GSIDNSIEKVASRICKVVRS-DIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALI 286
+ I K+ R+ V ++ I+ R+ R T+++ ++ + + G K +
Sbjct: 164 ----SEIVKILGRVKMVNKALSIFYQVKGRKCRPTAGTYNSVILMLMQE--GHHEKVHEL 217
Query: 287 FFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKG--------------- 331
+ E G D +Y+A+ S G+ + D ++ DEM+ G
Sbjct: 218 YNEMCSE-GHCFPDTVTYSALISAFGKLNRDDSAVRLFDEMKENGLQPTAKIYTTLMGIY 276
Query: 332 -------------YEMEMETCVKVLGRFSE-------RNMVKEAVDLYEFAMACKNKPSV 371
+EM M CV + ++E V++A +Y+ + KP V
Sbjct: 277 FKLGKVEEALNLVHEMRMRRCVPTVYTYTELIRGLGKSGRVEDAYGVYKNMLKDGCKPDV 336
Query: 372 NCCTFLLRKIVVSKQLD--MRLFSKVVRVFRENGNVLTDAMLNSVLKALIS-VGRMGECN 428
L+ + S +L + LF + +R+ NV+T N+++K+L E +
Sbjct: 337 VLMNNLINILGRSDRLKEAVELFEE-MRLLNCTPNVVT---YNTIIKSLFEDKAPPSEAS 392
Query: 429 KILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGH 488
L+ M++ G + SS S + + ++A ++ M+ G + SLI
Sbjct: 393 SWLERMKKDGVVPSSFTYSILIDGFCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINSL 452
Query: 489 CVAGDLDKAADCFQKMVEKEGTSHAG-YAIDLLVNTYCSK-NRAIDACKFVHNCVREYDL 546
A + A + FQ++ E G+S YA+ + C + N A+ + N +++
Sbjct: 453 GKAKRYEAANELFQELKENCGSSSVRVYAVMIKHFGKCGRFNEAMG----LFNEMKKLGC 508
Query: 547 KPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDP---FIKYVSKSGTSDDAIA 603
P Y LI ++ +A SL M+++G P ++ + ++++G A+
Sbjct: 509 IPDVYAYNALITGMVRADMMDEAFSLFRTMEENGCNPDINSHNIILNGLARTGGPKRAME 568
Query: 604 FLKGMTS 610
M S
Sbjct: 569 MFAKMKS 575
>gi|15228767|ref|NP_191806.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75181319|sp|Q9LZP3.1|PP293_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At3g62470, mitochondrial; Flags: Precursor
gi|7340718|emb|CAB82961.1| putative protein [Arabidopsis thaliana]
gi|34365579|gb|AAQ65101.1| At3g62470 [Arabidopsis thaliana]
gi|332646835|gb|AEE80356.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 599
Score = 82.4 bits (202), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 117/509 (22%), Positives = 211/509 (41%), Gaps = 52/509 (10%)
Query: 159 SERLSSKTYNLMLRIVGVHGLVQEFWGLVDV-MKKKGYGV-ASHVRNKMTEKFEKEGLES 216
S + S TY+ +I H VQ L+D + +G+ +S+V + E+ E E
Sbjct: 59 SRMIHSSTYHPYRQIPLPHSSVQ----LLDASLGCRGFSSGSSNVSDGCDEEVESE---C 111
Query: 217 DLEKLKGIFATGSIDNSIEKVASRICKVVRSDIWGD-DVERQLRDLNVTFSNDLVKFVVD 275
D ++ G+ S N E R+CKV+ D ++E L ++ + S+DL+ V++
Sbjct: 112 DNDEETGVSCVESSTNPEE--VERVCKVIDELFALDRNMEAVLDEMKLDLSHDLIVEVLE 169
Query: 276 KLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEME 335
+ K A FF WA E HD +YN+M S+L + + VL+EM +KG +
Sbjct: 170 RFRHARKPAFRFFCWAAERQGFAHDSRTYNSMMSILAKTRQFETMVSVLEEMGTKGL-LT 228
Query: 336 METCVKVLGRFSERNMVKEAVDLYEFAMACKNK---PSVNCCTFLLRKIVVSKQLDMRLF 392
MET + F+ K+AV ++E K K ++NC L + + K+ + LF
Sbjct: 229 METFTIAMKAFAAAKERKKAVGIFELMKKYKFKIGVETINCLLDSLGRAKLGKEAQV-LF 287
Query: 393 SKVVRVFREN-----------------------GNVLTDAML-------NSVLKALISVG 422
K+ F N N + D L N +L+ L+
Sbjct: 288 DKLKERFTPNMMTYTVLLNGWCRVRNLIEAARIWNDMIDQGLKPDIVAHNVMLEGLLRSR 347
Query: 423 RMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWV 482
+ + K+ M+ G + + + + A E+ D M SG ++
Sbjct: 348 KKSDAIKLFHVMKSKGPCPNVRSYTIMIRDFCKQSSMETAIEYFDDMVDSGLQPDAAVYT 407
Query: 483 SLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVR 542
LI G LD + ++M EK G G + L+ ++ A + ++N +
Sbjct: 408 CLITGFGTQKKLDTVYELLKEMQEK-GHPPDGKTYNALIKLMANQKMPEHATR-IYNKMI 465
Query: 543 EYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPF---IKYVSKSGTSD 599
+ +++P T+ ++K+ + R ++ ++ M G P + + I+ + G S
Sbjct: 466 QNEIEPSIHTFNMIMKSYFMARNYEMGRAVWEEMIKKGICPDDNSYTVLIRGLIGEGKSR 525
Query: 600 DAIAFLKGMTSKRFPSMSVVLCLFAAFFQ 628
+A +L+ M K + + FAA F
Sbjct: 526 EACRYLEEMLDKGMKTPLIDYNKFAADFH 554
Score = 48.9 bits (115), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 80/455 (17%), Positives = 183/455 (40%), Gaps = 86/455 (18%)
Query: 95 EQKESDFTVVSDIFYKFSDVNDISKQLELSGVVFTHEMVLKVLKNLESSPDEARRFFNWV 154
E+ E V+ ++F ++ + +++L +H+++++VL+ + A RFF W
Sbjct: 129 EEVERVCKVIDELFALDRNMEAVLDEMKLD---LSHDLIVEVLERFRHARKPAFRFFCWA 185
Query: 155 LEKESERLSSKTYNLMLRIV----------------GVHGLV------------------ 180
E++ S+TYN M+ I+ G GL+
Sbjct: 186 AERQGFAHDSRTYNSMMSILAKTRQFETMVSVLEEMGTKGLLTMETFTIAMKAFAAAKER 245
Query: 181 QEFWGLVDVMKKKGYGVASHVRNKMTEKFEKEGLESD----LEKLKGIFATGSIDNSIEK 236
++ G+ ++MKK + + N + + + L + +KLK F + ++
Sbjct: 246 KKAVGIFELMKKYKFKIGVETINCLLDSLGRAKLGKEAQVLFDKLKERFTPNMMTYTV-- 303
Query: 237 VASRICKVVR----SDIWGDDVERQLRD------------LNVTFSNDLVKF--VVDKLG 278
+ + C+V + IW D +++ L+ L +D +K V+ G
Sbjct: 304 LLNGWCRVRNLIEAARIWNDMIDQGLKPDIVAHNVMLEGLLRSRKKSDAIKLFHVMKSKG 363
Query: 279 DEP------------------KKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRF 320
P + A+ +F +SG ++ D + Y + + G + +D
Sbjct: 364 PCPNVRSYTIMIRDFCKQSSMETAIEYFDDMVDSG-LQPDAAVYTCLITGFGTQKKLDTV 422
Query: 321 WKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRK 380
+++L EM+ KG+ + +T ++ + + M + A +Y + + +PS++ +++
Sbjct: 423 YELLKEMQEKGHPPDGKTYNALIKLMANQKMPEHATRIYNKMIQNEIEPSIHTFNMIMKS 482
Query: 381 IVVSKQLDM--RLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGG 438
+++ +M ++ ++++ G D +++ LI G+ E + L+ M + G
Sbjct: 483 YFMARNYEMGRAVWEEMIK----KGICPDDNSYTVLIRGLIGEGKSREACRYLEEMLDKG 538
Query: 439 FIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASG 473
+K A G+ + E + SG
Sbjct: 539 MKTPLIDYNKFAADFHRGGQPEIFEELAQRAKFSG 573
>gi|357139229|ref|XP_003571186.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g16010-like [Brachypodium distachyon]
Length = 628
Score = 82.0 bits (201), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 103/428 (24%), Positives = 179/428 (41%), Gaps = 36/428 (8%)
Query: 233 SIEKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDK-LGDEPKKALIFFRWA 291
S+ + R ++++ WG D E+ L L + + LV+ V+ +G K + FFRWA
Sbjct: 52 SVRVMDERFIRILKIFKWGPDAEKALEVLMLKVDHWLVREVMKTDVGVNVK--MQFFRWA 109
Query: 292 EESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGY----EMEMETCVKVLGRFS 347
+ +HD S+Y A+ L + WK++ EM ME+ +++LG
Sbjct: 110 AKKRNYEHDTSTYMALIRCLEVVEQYGEMWKMIQEMVRNPVCVVTPMELSDIIRMLG--- 166
Query: 348 ERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRE---NGN 404
M+ +AV ++ K +P+ ++ ++ Q + KV ++ E G+
Sbjct: 167 NAKMISKAVAIFYQIKVRKCQPTAQAYNSMIIMLMHEGQ-----YEKVHELYNEMSNEGH 221
Query: 405 VLTDAMLNSVL-KALISVGRMGECNKILKAMEEGGFIASSNMKSKIA---FRLSSAGKKD 460
D + S L A +GR ++L M++ G ++ + + + F+L++
Sbjct: 222 CFPDTVTYSALISAFCKLGRQDSAIRLLNEMKDNGMQPTAKIYTMLIALFFKLNNVHGAL 281
Query: 461 EANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLL 520
E M H + DV + LI+G AG D+A + F +M +EG I+ +
Sbjct: 282 GLFEEMRH-QYCRPDVFT--YTELIRGLGKAGRFDEAYNFFHEM-RREGCRPDTVVINNM 337
Query: 521 VNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRG-FKDALSLLCLMKDH 579
+N R DA K + P TY +IK L + + S MK
Sbjct: 338 INFLGKAGRLDDAVKLFEE-MGTLQCIPSVVTYNTIIKALFESKSRISEISSWFERMKGS 396
Query: 580 GFPPFVDPF-----IKYVSKSGTSDDAIAFLKGMTSKRFPSMSVVLC-LFAAFFQARRHS 633
G P PF I K+ ++ A+ L+ M K FP C L A +A+R+
Sbjct: 397 GISP--SPFTYSILIDGFCKTNRTEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYD 454
Query: 634 EAQDLLSK 641
A +L +
Sbjct: 455 IAHELFQE 462
>gi|449484944|ref|XP_004157025.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At3g16010-like [Cucumis sativus]
Length = 637
Score = 82.0 bits (201), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 97/427 (22%), Positives = 171/427 (40%), Gaps = 31/427 (7%)
Query: 231 DNSIEKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRW 290
D S+ + R ++++ WG D E+ + L + + LV V+D + E + + FF+W
Sbjct: 55 DPSVRTLDERFIRILKIFKWGSDAEKAIEVLKLKVDHRLVHQVLD-IDVEIRAKIQFFKW 113
Query: 291 AEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEM-RSKGY--EMEMETCVKVLGRFS 347
A + +HD ++Y A+ L +D W+ + +M RS E +K+LG+
Sbjct: 114 AGKRQHFQHDSTTYMALIRCLEESGLVDEMWRTIQDMIRSPCSVGPAEWSEILKILGK-- 171
Query: 348 ERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRE---NGN 404
MV +A+ ++ K P+ L+ ++ + K+ ++ E GN
Sbjct: 172 -AKMVNKALSVFYQIKGRKCNPTATVYNTLILMLMHEGHHE-----KIHELYNEICSEGN 225
Query: 405 VLTDAMLNSVL-KALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEAN 463
D + S L A + R ++ M+E G + + + I K + A
Sbjct: 226 CSPDTITYSALISAFGKLERYDFAFRLFDEMKENGLHPTEKIYTTILAMYFKLNKVEAAL 285
Query: 464 EFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNT 523
++ M+ G + LIKG G +D A F M+ K+G I+ L+N
Sbjct: 286 RLVEEMKGKGCAPTVFTYTELIKGLGKVGRVDDAYSLFFNML-KDGCKPDVVLINNLINI 344
Query: 524 YCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSL-LCLMKDHGFP 582
R DA K + P TY +IK + + +L MK +G
Sbjct: 345 LGRAGRLEDALKLFGK-MDSLQCAPNVVTYNTVIKAIFESKAPASEAALWFEKMKANGIA 403
Query: 583 P-------FVDPFIKYVSKSGTSDDAIAFLKGMTSKRFPSMSVVLC-LFAAFFQARRHSE 634
P +D F K+ + A+ L+ M K FP C L + +A+R+
Sbjct: 404 PSSFTYAILIDGF----CKTNRVEKALLLLEEMDEKGFPPCPAAYCSLIDSLGRAKRYEA 459
Query: 635 AQDLLSK 641
A +L +
Sbjct: 460 ANELFQE 466
Score = 44.3 bits (103), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 106/574 (18%), Positives = 223/574 (38%), Gaps = 55/574 (9%)
Query: 91 EPAMEQKESDFTVVSDIFYKFSDVNDISKQLELSGVVFTHEMVLKVLKNLESSPDEARRF 150
+P++ + F + IF SD K +E+ + H +V +VL +++ +F
Sbjct: 55 DPSVRTLDERFIRILKIFKWGSDAE---KAIEVLKLKVDHRLVHQVL-DIDVEIRAKIQF 110
Query: 151 FNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRNKMTEKFE 210
F W +++ + S TY ++R + GLV E W + M + V + +E +
Sbjct: 111 FKWAGKRQHFQHDSTTYMALIRCLEESGLVDEMWRTIQDMIRSPCSVGPA---EWSEILK 167
Query: 211 KEGLESDLEKLKGIF--ATGSIDNSIEKVASRICKVVRSDIWGDDVERQLRDL--NVTFS 266
G + K +F G N V + + ++ + + + ++ S
Sbjct: 168 ILGKAKMVNKALSVFYQIKGRKCNPTATVYNTLILMLMHEGHHEKIHELYNEICSEGNCS 227
Query: 267 NDLVKF--VVDKLGDEPKKALIF--FRWAEESGFVKHDESSYNAMASVLGREDCIDRFWK 322
D + + ++ G + F F +E+G + E Y + ++ + + ++ +
Sbjct: 228 PDTITYSALISAFGKLERYDFAFRLFDEMKENG-LHPTEKIYTTILAMYFKLNKVEAALR 286
Query: 323 VLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIV 382
+++EM+ KG + T +++ + V +A L+ + KP V L+ +
Sbjct: 287 LVEEMKGKGCAPTVFTYTELIKGLGKVGRVDDAYSLFFNMLKDGCKPDVVLINNLINILG 346
Query: 383 VSKQLD--MRLFSK---------------VVRVFRENGNVLTDAML-------NSV---- 414
+ +L+ ++LF K V++ E+ ++A L N +
Sbjct: 347 RAGRLEDALKLFGKMDSLQCAPNVVTYNTVIKAIFESKAPASEAALWFEKMKANGIAPSS 406
Query: 415 ------LKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDH 468
+ R+ + +L+ M+E GF + L A + + ANE
Sbjct: 407 FTYAILIDGFCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLIDSLGRAKRYEAANELFQE 466
Query: 469 MEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKN 528
++ + +++ +IK G L A D F + EK G S Y + L++
Sbjct: 467 LKENCGRSSARVYAVMIKHFGNCGRLSDAVDLFCE-XEKLGCSPDVYTYNALMSGMIRAG 525
Query: 529 RAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFV--- 585
+A + N +RE P ++ ++ L G K A+ + MK+ P
Sbjct: 526 MIDEAHSLMRN-MRENGCTPDIKSHNIILNGLAKTGGPKRAIEMFTKMKESEIMPDAVSY 584
Query: 586 DPFIKYVSKSGTSDDAIAFLKGMTSKRFPSMSVV 619
+ + +S++G + A ++ M K F S+
Sbjct: 585 NTILSCLSRAGMFEMAAKLMREMKLKGFEYDSIT 618
>gi|449469490|ref|XP_004152453.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74850,
chloroplastic-like [Cucumis sativus]
Length = 864
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 81/358 (22%), Positives = 145/358 (40%), Gaps = 7/358 (1%)
Query: 282 KKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVK 341
+++L F++ + + K +E Y + S+LGRE +++ ++ DEM S+G + +
Sbjct: 129 QRSLRLFKYMQRQIWCKPNEHIYTIIISLLGREGLLEKCSEIFDEMASQGVIRSVFSYTA 188
Query: 342 VLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRE 401
++ + + +++L E + P++ ++ LD + R
Sbjct: 189 LINAYGRNGQYETSLELLERMKRERVSPNILTYNTVINA-CARGDLDWEGLLGLFAEMRH 247
Query: 402 NGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDE 461
G N++L A + G E + K M EGG + S I GK ++
Sbjct: 248 EGVQPDLVTYNTLLSACAARGLGDEAEMVFKTMIEGGIVPEITTYSYIVETFGKLGKLEK 307
Query: 462 ANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLV 521
+ ME+ G + LI+ H G + +A D F++M + G +L+
Sbjct: 308 VAMLLKEMESEGYLPDISSYNVLIEAHAKLGSIKEAMDVFKQM-QAAGCVPNASTYSILL 366
Query: 522 NTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGF 581
N Y R D + ++E +P TTY LI+ FK+ ++L + D
Sbjct: 367 NLYGKHGRYDDVRELFLQ-MKESSAEPDATTYNILIRVFGEGGYFKEVVTLFHDLVDENI 425
Query: 582 PPFVDPFIKYV---SKSGTSDDAIAFLKGMTSKRF-PSMSVVLCLFAAFFQARRHSEA 635
P ++ + V K G +DA L M K PS L A+ QA + EA
Sbjct: 426 DPNMETYEGLVFACGKGGLHEDAKKILFHMNGKGIVPSSKAYSGLIEAYGQAALYDEA 483
Score = 43.9 bits (102), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 75/384 (19%), Positives = 155/384 (40%), Gaps = 22/384 (5%)
Query: 136 VLKNLESSPDEAR--RFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLVDVMKKK 193
V K + D R R F ++ + + + Y +++ ++G GL+++ + D M +
Sbjct: 118 VFKEFAARGDWQRSLRLFKYMQRQIWCKPNEHIYTIIISLLGREGLLEKCSEIFDEMASQ 177
Query: 194 GYGVASHVRNKMTEKFEKEG-LESDLEKLKGIFATGSIDNSIEKVASRICKVVRSDI-W- 250
G + + + + G E+ LE L+ + + +I + I R D+ W
Sbjct: 178 GVIRSVFSYTALINAYGRNGQYETSLELLERM-KRERVSPNILTYNTVINACARGDLDWE 236
Query: 251 ---GDDVERQLRDLN---VTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSY 304
G E + + VT++ L LGDE A + F+ E G V + ++Y
Sbjct: 237 GLLGLFAEMRHEGVQPDLVTYNTLLSACAARGLGDE---AEMVFKTMIEGGIVP-EITTY 292
Query: 305 NAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMA 364
+ + G+ +++ +L EM S+GY ++ + ++ ++ +KEA+D+++ A
Sbjct: 293 SYIVETFGKLGKLEKVAMLLKEMESEGYLPDISSYNVLIEAHAKLGSIKEAMDVFKQMQA 352
Query: 365 CKNKPSVNCCTFLLRKIVVSKQLD--MRLFSKVVRVFRENGNVLTDAMLNSVLKALISVG 422
P+ + + LL + D LF ++ +E+ N +++ G
Sbjct: 353 AGCVPNASTYSILLNLYGKHGRYDDVRELFLQM----KESSAEPDATTYNILIRVFGEGG 408
Query: 423 RMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWV 482
E + + + + + F G ++A + + HM G K +
Sbjct: 409 YFKEVVTLFHDLVDENIDPNMETYEGLVFACGKGGLHEDAKKILFHMNGKGIVPSSKAYS 468
Query: 483 SLIKGHCVAGDLDKAADCFQKMVE 506
LI+ + A D+A F M E
Sbjct: 469 GLIEAYGQAALYDEALVAFNTMNE 492
>gi|449487793|ref|XP_004157803.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74850,
chloroplastic-like [Cucumis sativus]
Length = 864
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 81/358 (22%), Positives = 145/358 (40%), Gaps = 7/358 (1%)
Query: 282 KKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVK 341
+++L F++ + + K +E Y + S+LGRE +++ ++ DEM S+G + +
Sbjct: 129 QRSLRLFKYMQRQIWCKPNEHIYTIIISLLGREGLLEKCSEIFDEMASQGVIRSVFSYTA 188
Query: 342 VLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRE 401
++ + + +++L E + P++ ++ LD + R
Sbjct: 189 LINAYGRNGQYETSLELLERMKRERVSPNILTYNTVINA-CARGDLDWEGLLGLFAEMRH 247
Query: 402 NGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDE 461
G N++L A + G E + K M EGG + S I GK ++
Sbjct: 248 EGVQPDLVTYNTLLSACAARGLGDEAEMVFKTMIEGGIVPEITTYSYIVETFGKLGKLEK 307
Query: 462 ANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLV 521
+ ME+ G + LI+ H G + +A D F++M + G +L+
Sbjct: 308 VAMLLKEMESEGYLPDISSYNVLIEAHAKLGSIKEAMDVFKQM-QAAGCVPNASTYSILL 366
Query: 522 NTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGF 581
N Y R D + ++E +P TTY LI+ FK+ ++L + D
Sbjct: 367 NLYGKHGRYDDVRELFLQ-MKESSAEPDATTYNILIRVFGEGGYFKEVVTLFHDLVDENI 425
Query: 582 PPFVDPFIKYV---SKSGTSDDAIAFLKGMTSKRF-PSMSVVLCLFAAFFQARRHSEA 635
P ++ + V K G +DA L M K PS L A+ QA + EA
Sbjct: 426 DPNMETYEGLVFACGKGGLHEDAKKILFHMNGKGIVPSSKAYSGLIEAYGQAALYDEA 483
Score = 43.5 bits (101), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 75/384 (19%), Positives = 155/384 (40%), Gaps = 22/384 (5%)
Query: 136 VLKNLESSPDEAR--RFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLVDVMKKK 193
V K + D R R F ++ + + + Y +++ ++G GL+++ + D M +
Sbjct: 118 VFKEFAARGDWQRSLRLFKYMQRQIWCKPNEHIYTIIISLLGREGLLEKCSEIFDEMASQ 177
Query: 194 GYGVASHVRNKMTEKFEKEG-LESDLEKLKGIFATGSIDNSIEKVASRICKVVRSDI-W- 250
G + + + + G E+ LE L+ + + +I + I R D+ W
Sbjct: 178 GVIRSVFSYTALINAYGRNGQYETSLELLERM-KRERVSPNILTYNTVINACARGDLDWE 236
Query: 251 ---GDDVERQLRDLN---VTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSY 304
G E + + VT++ L LGDE A + F+ E G V + ++Y
Sbjct: 237 GLLGLFAEMRHEGVQPDLVTYNTLLSACAARGLGDE---AEMVFKTMIEGGIVP-EITTY 292
Query: 305 NAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMA 364
+ + G+ +++ +L EM S+GY ++ + ++ ++ +KEA+D+++ A
Sbjct: 293 SYIVETFGKLGKLEKVAMLLKEMESEGYLPDISSYNVLIEAHAKLGSIKEAMDVFKQMQA 352
Query: 365 CKNKPSVNCCTFLLRKIVVSKQLD--MRLFSKVVRVFRENGNVLTDAMLNSVLKALISVG 422
P+ + + LL + D LF ++ +E+ N +++ G
Sbjct: 353 AGCVPNASTYSILLNLYGKHGRYDDVRELFLQM----KESSAEPDATTYNILIRVFGEGG 408
Query: 423 RMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWV 482
E + + + + + F G ++A + + HM G K +
Sbjct: 409 YFKEVVTLFHDLVDENIDPNMETYEGLVFACGKGGLHEDAKKILFHMNGKGIVPSSKAYS 468
Query: 483 SLIKGHCVAGDLDKAADCFQKMVE 506
LI+ + A D+A F M E
Sbjct: 469 GLIEAYGQAALYDEALVAFNTMNE 492
>gi|449467657|ref|XP_004151539.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g16010-like [Cucumis sativus]
Length = 637
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 95/427 (22%), Positives = 170/427 (39%), Gaps = 31/427 (7%)
Query: 231 DNSIEKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRW 290
D S+ + R ++++ WG D E+ + L + + LV V+D + E + + FF+W
Sbjct: 55 DPSVRTLDERFIRILKIFKWGSDAEKAIEVLKLKVDHRLVHQVLD-IDVEIRAKIQFFKW 113
Query: 291 AEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEM---EMETCVKVLGRFS 347
A + +HD ++Y A+ L +D W+ + +M + E +K+LG+
Sbjct: 114 AGKRQHFQHDSTTYMALIRCLEESGLVDEMWRTIQDMIRSPCSVGPAEWSEILKILGK-- 171
Query: 348 ERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRE---NGN 404
MV +A+ ++ K P+ L+ ++ + K+ ++ E GN
Sbjct: 172 -AKMVNKALSVFYQIKGRKCNPTATVYNTLILMLMHEGHHE-----KIHELYNEICSEGN 225
Query: 405 VLTDAMLNSVL-KALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEAN 463
D + S L A + R ++ M+E G + + + I K + A
Sbjct: 226 CSPDTITYSALISAFGKLERYDFAFRLFDEMKENGLHPTEKIYTTILAMYFKLNKVEAAL 285
Query: 464 EFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNT 523
++ M+ G + LIKG G +D A F M+ K+G I+ L+N
Sbjct: 286 RLVEEMKGKGCAPTVFTYTELIKGLGKVGRVDDAYSLFFNML-KDGCKPDVVLINNLINI 344
Query: 524 YCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSL-LCLMKDHGFP 582
R DA K + P TY +IK + + +L MK +G
Sbjct: 345 LGRAGRLEDALKLFGK-MDSLQCAPNVVTYNTVIKAIFESKAPASEAALWFEKMKANGIA 403
Query: 583 P-------FVDPFIKYVSKSGTSDDAIAFLKGMTSKRFPSMSVVLC-LFAAFFQARRHSE 634
P +D F K+ + A+ L+ M K FP C L + +A+R+
Sbjct: 404 PSSFTYAILIDGF----CKTNRVEKALLLLEEMDEKGFPPCPAAYCSLIDSLGRAKRYEA 459
Query: 635 AQDLLSK 641
A +L +
Sbjct: 460 ANELFQE 466
Score = 45.1 bits (105), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 106/574 (18%), Positives = 224/574 (39%), Gaps = 55/574 (9%)
Query: 91 EPAMEQKESDFTVVSDIFYKFSDVNDISKQLELSGVVFTHEMVLKVLKNLESSPDEARRF 150
+P++ + F + IF SD K +E+ + H +V +VL +++ +F
Sbjct: 55 DPSVRTLDERFIRILKIFKWGSDAE---KAIEVLKLKVDHRLVHQVL-DIDVEIRAKIQF 110
Query: 151 FNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRNKMTEKFE 210
F W +++ + S TY ++R + GLV E W + M + V + +E +
Sbjct: 111 FKWAGKRQHFQHDSTTYMALIRCLEESGLVDEMWRTIQDMIRSPCSVGPA---EWSEILK 167
Query: 211 KEGLESDLEKLKGIF--ATGSIDNSIEKVASRICKVVRSDIWGDDVERQLRDL--NVTFS 266
G + K +F G N V + + ++ + + + ++ S
Sbjct: 168 ILGKAKMVNKALSVFYQIKGRKCNPTATVYNTLILMLMHEGHHEKIHELYNEICSEGNCS 227
Query: 267 NDLVKF--VVDKLGDEPKKALIF--FRWAEESGFVKHDESSYNAMASVLGREDCIDRFWK 322
D + + ++ G + F F +E+G + E Y + ++ + + ++ +
Sbjct: 228 PDTITYSALISAFGKLERYDFAFRLFDEMKENG-LHPTEKIYTTILAMYFKLNKVEAALR 286
Query: 323 VLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIV 382
+++EM+ KG + T +++ + V +A L+ + KP V L+ +
Sbjct: 287 LVEEMKGKGCAPTVFTYTELIKGLGKVGRVDDAYSLFFNMLKDGCKPDVVLINNLINILG 346
Query: 383 VSKQLD--MRLFSK---------------VVRVFRENGNVLTDAML-------NSV---- 414
+ +L+ ++LF K V++ E+ ++A L N +
Sbjct: 347 RAGRLEDALKLFGKMDSLQCAPNVVTYNTVIKAIFESKAPASEAALWFEKMKANGIAPSS 406
Query: 415 ------LKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDH 468
+ R+ + +L+ M+E GF + L A + + ANE
Sbjct: 407 FTYAILIDGFCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLIDSLGRAKRYEAANELFQE 466
Query: 469 MEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKN 528
++ + +++ +IK G L A D F +M +K G S Y + L++
Sbjct: 467 LKENCGRSSARVYAVMIKHFGNCGRLSDAVDLFCEM-KKLGCSPDVYTYNALMSGMIRAG 525
Query: 529 RAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFV--- 585
+A + N +RE P ++ ++ L G K A+ + MK+ P
Sbjct: 526 MIDEAHSLMRN-MRENGCTPDIKSHNIILNGLAKTGGPKRAIEMFTKMKESEIMPDAVSY 584
Query: 586 DPFIKYVSKSGTSDDAIAFLKGMTSKRFPSMSVV 619
+ + +S++G + A ++ M K F S+
Sbjct: 585 NTILSCLSRAGMFEMAAKLMREMKLKGFEYDSIT 618
>gi|15237662|ref|NP_201237.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75171655|sp|Q9FMF6.1|PP444_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At5g64320, mitochondrial; Flags: Precursor
gi|9759408|dbj|BAB09863.1| unnamed protein product [Arabidopsis thaliana]
gi|332010486|gb|AED97869.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 730
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 90/374 (24%), Positives = 158/374 (42%), Gaps = 22/374 (5%)
Query: 241 ICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHD 300
+CK+ R D D R + V F+ + FV D+ K L G V D
Sbjct: 332 LCKIGRVDAAKDLFYRIPKPEIVIFNTLIHGFVTHGRLDDAKAVL--SDMVTSYGIVP-D 388
Query: 301 ESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYE 360
+YN++ +E + +VL +MR+KG + + + ++ F + + EA ++
Sbjct: 389 VCTYNSLIYGYWKEGLVGLALEVLHDMRNKGCKPNVYSYTILVDGFCKLGKIDEAYNVLN 448
Query: 361 FAMACKNKPSV---NCCTFLLRKIVVSKQLDMRLFSKVVRVFRE---NGNVLTDAMLNSV 414
A KP+ NC ++S + V +FRE G NS+
Sbjct: 449 EMSADGLKPNTVGFNC--------LISAFCKEHRIPEAVEIFREMPRKGCKPDVYTFNSL 500
Query: 415 LKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGS 474
+ L V + +L+ M G +A++ + + G+ EA + ++ M GS
Sbjct: 501 ISGLCEVDEIKHALWLLRDMISEGVVANTVTYNTLINAFLRRGEIKEARKLVNEMVFQGS 560
Query: 475 DVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDAC 534
+ + + SLIKG C AG++DKA F+KM+ ++G + + + ++L+N C +A
Sbjct: 561 PLDEITYNSLIKGLCRAGEVDKARSLFEKML-RDGHAPSNISCNILINGLCRSGMVEEAV 619
Query: 535 KFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPF---IKY 591
+F V P T+ LI L +D L++ ++ G PP F + +
Sbjct: 620 EFQKEMVLRGS-TPDIVTFNSLINGLCRAGRIEDGLTMFRKLQAEGIPPDTVTFNTLMSW 678
Query: 592 VSKSGTSDDAIAFL 605
+ K G DA L
Sbjct: 679 LCKGGFVYDACLLL 692
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 66/299 (22%), Positives = 128/299 (42%), Gaps = 11/299 (3%)
Query: 350 NMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDA 409
N K A +++ ++ K P++ +++ ++D L ++R ++G V
Sbjct: 196 NCHKVAANVFYDMLSRKIPPTLFTFGVVMKAFCAVNEIDSAL--SLLRDMTKHGCVPNSV 253
Query: 410 MLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHM 469
+ +++ +L R+ E ++L+ M G + + + + L + +EA + ++ M
Sbjct: 254 IYQTLIHSLSKCNRVNEALQLLEEMFLMGCVPDAETFNDVILGLCKFDRINEAAKMVNRM 313
Query: 470 EASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNR 529
G D + L+ G C G +D A D F ++ + E + L++ + + R
Sbjct: 314 LIRGFAPDDITYGYLMNGLCKIGRVDAAKDLFYRIPKPEIV-----IFNTLIHGFVTHGR 368
Query: 530 AIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPFI 589
DA + + V Y + P TY LI + AL +L M++ G P V +
Sbjct: 369 LDDAKAVLSDMVTSYGIVPDVCTYNSLIYGYWKEGLVGLALEVLHDMRNKGCKPNVYSYT 428
Query: 590 KYVS---KSGTSDDAIAFLKGMTSKRF-PSMSVVLCLFAAFFQARRHSEAQDLLSKCPR 644
V K G D+A L M++ P+ CL +AF + R EA ++ + PR
Sbjct: 429 ILVDGFCKLGKIDEAYNVLNEMSADGLKPNTVGFNCLISAFCKEHRIPEAVEIFREMPR 487
>gi|242092396|ref|XP_002436688.1| hypothetical protein SORBIDRAFT_10g007070 [Sorghum bicolor]
gi|241914911|gb|EER88055.1| hypothetical protein SORBIDRAFT_10g007070 [Sorghum bicolor]
Length = 551
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 100/424 (23%), Positives = 174/424 (41%), Gaps = 27/424 (6%)
Query: 233 SIEKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAE 292
I + A +C++V + + L L V S +LV V+ L + AL FFRWAE
Sbjct: 98 GISEAAKMVCRIVSTQP-EPRIASTLDALGVAMSPELVAEVLKNLSNAGMLALAFFRWAE 156
Query: 293 ESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMV 352
+ ++ + LG+ W +++ MR +G + +T ++ R++ V
Sbjct: 157 RQEGFSYTAEGFHNLIEALGKIKQFKLVWSLVETMRCRGL-LSKDTFKLIVRRYARARKV 215
Query: 353 KEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLN 412
KEAV+ +E K ++ +L+ + SKQ+ + + + + G + D
Sbjct: 216 KEAVETFEKMSIFGLKTELSDYNWLIDTLSKSKQV--KKAQAIYKEMKRKGKFVPDLKTY 273
Query: 413 SVL-------KALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEF 465
+VL K L+ V M + M + G + +GK DEA +
Sbjct: 274 TVLMEGWGHEKDLLMVKTM------YQEMIDAGIRPDVVAYGMLISAFCKSGKCDEAIKV 327
Query: 466 MDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYC 525
MEASG ++ LI G LD+A F++ +K G + +V YC
Sbjct: 328 FYEMEASGCMPSPHVYCMLINGLGSEERLDEALKYFEQ-YKKSGFPMEVPTCNAVVGAYC 386
Query: 526 SKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFV 585
++ A K V +RE + P TY+ ++ L+ + F++A ++ M G P +
Sbjct: 387 RASKFEHAFKMVDE-MRECKIGPNSRTYDVILHYLIKSQKFEEAYNVFQRMGMDGCEPQL 445
Query: 586 DPFIKYVS---KSGTSDDAIAFLKGMTSKR-FPSMSVVLCLFAAFFQARRHSEA----QD 637
+ + V +G D A+ K M + P M + L R EA Q+
Sbjct: 446 NTYTMMVGMFCSNGRVDMALNVWKQMGERGVLPCMHMFSALINGLCFENRLEEACVYFQE 505
Query: 638 LLSK 641
+L K
Sbjct: 506 MLDK 509
Score = 67.8 bits (164), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 94/435 (21%), Positives = 174/435 (40%), Gaps = 58/435 (13%)
Query: 117 ISKQLELSGVVFTHEMVLKVLKNLESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVGV 176
I+ L+ GV + E+V +VLKNL ++ A FF W +E +++ ++ ++ +G
Sbjct: 118 IASTLDALGVAMSPELVAEVLKNLSNAGMLALAFFRWAERQEGFSYTAEGFHNLIEALGK 177
Query: 177 HGLVQEFWGLVDVMKKKG-------------YGVASHVRNKMTEKFEKE---GLESDLEK 220
+ W LV+ M+ +G Y A V+ + E FEK GL+++L
Sbjct: 178 IKQFKLVWSLVETMRCRGLLSKDTFKLIVRRYARARKVKEAV-ETFEKMSIFGLKTELSD 236
Query: 221 LKGIFATGSIDNSIEKVASRICK---------------VVRSDIWGDD------------ 253
+ T S ++K A I K V + WG +
Sbjct: 237 YNWLIDTLSKSKQVKK-AQAIYKEMKRKGKFVPDLKTYTVLMEGWGHEKDLLMVKTMYQE 295
Query: 254 -VERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLG 312
++ +R V + + F DE A+ F E SG + Y + + LG
Sbjct: 296 MIDAGIRPDVVAYGMLISAFCKSGKCDE---AIKVFYEMEASGCMPSPH-VYCMLINGLG 351
Query: 313 REDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVN 372
E+ +D K ++ + G+ ME+ TC V+G + + + A + + CK P+
Sbjct: 352 SEERLDEALKYFEQYKKSGFPMEVPTCNAVVGAYCRASKFEHAFKMVDEMRECKIGPNSR 411
Query: 373 CCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNS---VLKALISVGRMGECNK 429
+L ++ S++ F + VF+ G + LN+ ++ S GR+
Sbjct: 412 TYDVILHYLIKSQK-----FEEAYNVFQRMGMDGCEPQLNTYTMMVGMFCSNGRVDMALN 466
Query: 430 ILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHC 489
+ K M E G + +M S + L + +EA + M G +++ +L +
Sbjct: 467 VWKQMGERGVLPCMHMFSALINGLCFENRLEEACVYFQEMLDKGIRPPGQLFSNLKEALV 526
Query: 490 VAGDLDKAADCFQKM 504
G + A + K+
Sbjct: 527 EGGRISLAQEMASKL 541
>gi|356529689|ref|XP_003533421.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g65560-like [Glycine max]
Length = 892
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 75/324 (23%), Positives = 152/324 (46%), Gaps = 12/324 (3%)
Query: 283 KALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKV 342
+AL F E G + + +Y + L +E +D K+L+EM KG + +
Sbjct: 308 EALSLFGEMRERG-CEPNVYTYTVLIDYLCKEGRMDEALKMLNEMVEKGVAPSVVPFNAL 366
Query: 343 LGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLD--MRLFSKVVRVFR 400
+G + +R M+++AV + + K P+V L+ K +D M L +K+V +
Sbjct: 367 IGSYCKRGMMEDAVGVLGLMESKKVCPNVRTYNELICGFCRGKSMDRAMALLNKMVES-K 425
Query: 401 ENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKD 460
+ +V+T N+++ L VG + +++ + M GF + L G+
Sbjct: 426 LSPDVVT---YNTLIHGLCEVGVVDSASRLFRLMIRDGFSPDQWTFNAFMVCLCRMGRVG 482
Query: 461 EANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLL 520
EA++ ++ ++ + + +LI G+C AG ++ AA F++M+ +E ++ +++
Sbjct: 483 EAHQILESLKEKHVKANEHAYTALIDGYCKAGKIEHAASLFKRMLAEECLPNS-ITFNVM 541
Query: 521 VNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHG 580
++ + + DA V + + ++D+KP TY L++ +L + F A +L + G
Sbjct: 542 IDGLRKEGKVQDAMLLVED-MAKFDVKPTLHTYNILVEEVLKEYDFDRANEILNRLISSG 600
Query: 581 FPPFV---DPFIKYVSKSGTSDDA 601
+ P V FIK G ++A
Sbjct: 601 YQPNVVTYTAFIKAYCSQGRLEEA 624
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 52/232 (22%), Positives = 87/232 (37%), Gaps = 6/232 (2%)
Query: 412 NSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEA 471
+++ L G++ E + M E G + + + L +G++ EA M
Sbjct: 259 TNLIHGLCEAGKLHEALEFWARMREDGCFPTVRTYTVLVCALCESGRELEALSLFGEMRE 318
Query: 472 SGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAI 531
G + + LI C G +D+A +MVEK G + + + L+ +YC +
Sbjct: 319 RGCEPNVYTYTVLIDYLCKEGRMDEALKMLNEMVEK-GVAPSVVPFNALIGSYCKRGMME 377
Query: 532 DACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFV---DPF 588
DA V + + P TY ELI + A++LL M + P V +
Sbjct: 378 DAVG-VLGLMESKKVCPNVRTYNELICGFCRGKSMDRAMALLNKMVESKLSPDVVTYNTL 436
Query: 589 IKYVSKSGTSDDAIAFLKGMTSKRF-PSMSVVLCLFAAFFQARRHSEAQDLL 639
I + + G D A + M F P + R EA +L
Sbjct: 437 IHGLCEVGVVDSASRLFRLMIRDGFSPDQWTFNAFMVCLCRMGRVGEAHQIL 488
Score = 47.8 bits (112), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 88/434 (20%), Positives = 172/434 (39%), Gaps = 57/434 (13%)
Query: 146 EARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRNKM 205
EA F + E+ E + TY +++ + G + E +++ M +KG + N +
Sbjct: 308 EALSLFGEMRERGCEP-NVYTYTVLIDYLCKEGRMDEALKMLNEMVEKGVAPSVVPFNAL 366
Query: 206 TEKFEKEGLESDLEKLKGIFATGSIDNSIEKVASRICKVVRSDIWGDDVERQLRDLN--- 262
+ K G+ D + G+ + + ++ IC R G ++R + LN
Sbjct: 367 IGSYCKRGMMEDAVGVLGLMESKKVCPNVRTYNELICGFCR----GKSMDRAMALLNKMV 422
Query: 263 -VTFSNDLVKF--VVDKLGDEP--KKALIFFRWAEESGFVKHDESSYNAMASVLGREDCI 317
S D+V + ++ L + A FR GF D+ ++NA L R +
Sbjct: 423 ESKLSPDVVTYNTLIHGLCEVGVVDSASRLFRLMIRDGF-SPDQWTFNAFMVCLCRMGRV 481
Query: 318 DRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFL 377
++L+ ++ K + ++ + + ++ A L++ +A + P N T
Sbjct: 482 GEAHQILESLKEKHVKANEHAYTALIDGYCKAGKIEHAASLFKRMLAEECLP--NSIT-- 537
Query: 378 LRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKIL--KAME 435
F+ ++ R+ G V DAML A V IL + ++
Sbjct: 538 --------------FNVMIDGLRKEGKV-QDAMLLVEDMAKFDVKPTLHTYNILVEEVLK 582
Query: 436 EGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLD 495
E F D ANE ++ + +SG + + IK +C G L+
Sbjct: 583 EYDF--------------------DRANEILNRLISSGYQPNVVTYTAFIKAYCSQGRLE 622
Query: 496 KAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEE 555
+A + K ++ EG + +LL+N Y +D+ V + +P + TY
Sbjct: 623 EAEEMVIK-IKNEGVLLDSFIYNLLINAYGCMG-LLDSAFGVLRRMFGTGCEPSYLTYSI 680
Query: 556 LIKNLLVQRGFKDA 569
L+K+L++++ K+
Sbjct: 681 LMKHLVIEKHKKEG 694
Score = 44.7 bits (104), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 48/195 (24%), Positives = 72/195 (36%), Gaps = 35/195 (17%)
Query: 481 WVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDL--------------------- 519
+ SL+ G+C D+++A F M + S+ L
Sbjct: 227 YTSLVLGYCRNDDVERACGVFCVMPRRNAVSYTNLIHGLCEAGKLHEALEFWARMREDGC 286
Query: 520 ---------LVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDAL 570
LV C R ++A +RE +P TY LI L + +AL
Sbjct: 287 FPTVRTYTVLVCALCESGRELEALSLFGE-MRERGCEPNVYTYTVLIDYLCKEGRMDEAL 345
Query: 571 SLLCLMKDHGFPPFVDPF---IKYVSKSGTSDDAIAFLKGMTSKRF-PSMSVVLCLFAAF 626
+L M + G P V PF I K G +DA+ L M SK+ P++ L F
Sbjct: 346 KMLNEMVEKGVAPSVVPFNALIGSYCKRGMMEDAVGVLGLMESKKVCPNVRTYNELICGF 405
Query: 627 FQARRHSEAQDLLSK 641
+ + A LL+K
Sbjct: 406 CRGKSMDRAMALLNK 420
>gi|297745567|emb|CBI40732.3| unnamed protein product [Vitis vinifera]
Length = 520
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 93/393 (23%), Positives = 157/393 (39%), Gaps = 78/393 (19%)
Query: 212 EGLESDLEKLKGIFATGSIDNSIEKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVK 271
+G S EKL+G+F I+++ + +E L ++ + + D+V
Sbjct: 55 DGFLSPGEKLRGVF--------IQRLRGKAA-----------IELALTNVGIDLTIDIVS 95
Query: 272 FVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKG 331
V+++ + +IFF WA + + D +YN + LGR I+ KVL +M +G
Sbjct: 96 EVINRGNLGGEAMVIFFNWAVKQPTIPKDVDTYNVIIKALGRRKFIEFVVKVLKDMHIQG 155
Query: 332 YEMEMETCVKVLGRFSERNMVKEAVDLY----EFAMACKNKPSVNCCTFLLRKIVVSKQL 387
ET V+ F + V +A++++ EF C + S+N LL+ + +
Sbjct: 156 ISPNYETLSIVMDSFIKARQVSKAIEMFRNLEEFGGKCDTE-SLN---VLLQCLCQRSHV 211
Query: 388 D-MRLFSKVVRVFRENGNVLTDAM-LNSVLKALISVGRMGECNKILKAMEEGGFIASSNM 445
LF ++ G + + M N ++ G++GE + LKAM GF +
Sbjct: 212 GAANLFFNAMK-----GGIPFNCMTYNIIIGGWSKYGKIGEMERCLKAMVADGFSPNCLT 266
Query: 446 KSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMV 505
S + L AG+ D+A E HME +G + CV
Sbjct: 267 FSHLIEGLGRAGRIDDAVEVFHHMEETGC----------VPNACV--------------- 301
Query: 506 EKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRG 565
+ L++ + S R D C +N + + P TY +LI L R
Sbjct: 302 -----------YNALISNFIS-TRDFDECLKYYNFMVSSNCDPNMDTYTKLIVAFLKARK 349
Query: 566 FKDALSLLCLMKDHGFPP-------FVDPFIKY 591
DAL +L M G P F++P +Y
Sbjct: 350 VADALEMLDEMVGRGMIPTTGAITSFIEPLCQY 382
>gi|147862837|emb|CAN78368.1| hypothetical protein VITISV_028672 [Vitis vinifera]
Length = 927
Score = 81.3 bits (199), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 100/426 (23%), Positives = 172/426 (40%), Gaps = 41/426 (9%)
Query: 239 SRICKVVRSDIWGD-DVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFV 297
SR+C+V+ D ++E L + NV S+ LV V+++ K A FF WA +
Sbjct: 206 SRVCRVIDELFALDRNMEAVLDECNVDLSHALVVGVLERFKHARKPAFRFFCWAGQKAGF 265
Query: 298 KHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVD 357
H+ +YNAM SVLGR + +L EM KG + MET + F+ K+AV
Sbjct: 266 THNSRTYNAMMSVLGRTRQFESMMGMLGEMGEKGL-LTMETFSIAIKAFAAAKERKKAVG 324
Query: 358 LYEFAMACKNKPSVNCCTFLLRKIVVSK--QLDMRLFSKVVRVFRENGNVLTDAMLN--- 412
++E V+ LL + +K + LF K+ F N T +LN
Sbjct: 325 VFELMKRYNFDAGVDTINCLLDNLGRAKLGKEAQALFEKLEDRFTPNLRTYT-VLLNGWC 383
Query: 413 ----------------------------SVLKALISVGRMGECNKILKAMEEGGFIASSN 444
++L+ L+ + + K+ + M+ G +
Sbjct: 384 RIKNLVEAGRTWNEMIDKGFKPDIIAHHTMLEGLLKCKKKSDAIKLFEVMKAKGPSPNVR 443
Query: 445 MKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKM 504
+ + L K EA E+ D M SG ++ LI G +DK ++M
Sbjct: 444 TYTILIRDLCKQMKMKEAVEYFDEMVDSGCQPDAAVYTCLITGFGNQKKMDKVYALLKEM 503
Query: 505 VEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQR 564
EK G G + L+ ++ DA + ++ ++P TY ++K+ R
Sbjct: 504 KEK-GCPADGRTYNALIKLMTNRQMPDDAVRIYKKMIQN-GIQPTLHTYNMMMKSYFYTR 561
Query: 565 GFKDALSLLCLMKDHGFPPFVDPFIKYVS---KSGTSDDAIAFLKGMTSKRFPSMSVVLC 621
++ ++ M G P + +I ++ + G S++A +L+ M K + +
Sbjct: 562 NYEMGCAVWKEMGRKGCCPDDNSYIVFIGGLIRHGRSEEACRYLEEMIEKGMKAPQLDYN 621
Query: 622 LFAAFF 627
FAA F
Sbjct: 622 KFAADF 627
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/192 (23%), Positives = 83/192 (43%), Gaps = 3/192 (1%)
Query: 282 KKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVK 341
K+A+ +F +SG + D + Y + + G + +D+ + +L EM+ KG + T
Sbjct: 459 KEAVEYFDEMVDSG-CQPDAAVYTCLITGFGNQKKMDKVYALLKEMKEKGCPADGRTYNA 517
Query: 342 VLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRE 401
++ + R M +AV +Y+ + +P+++ +++ ++ +M V +
Sbjct: 518 LIKLMTNRQMPDDAVRIYKKMIQNGIQPTLHTYNMMMKSYFYTRNYEMG--CAVWKEMGR 575
Query: 402 NGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDE 461
G D + LI GR E + L+ M E G A +K A S AGK D
Sbjct: 576 KGCCPDDNSYIVFIGGLIRHGRSEEACRYLEEMIEKGMKAPQLDYNKFAADFSRAGKPDI 635
Query: 462 ANEFMDHMEASG 473
E M+ G
Sbjct: 636 LEELARKMKFEG 647
Score = 47.0 bits (110), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 79/397 (19%), Positives = 165/397 (41%), Gaps = 21/397 (5%)
Query: 121 LELSGVVFTHEMVLKVLKNLESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLV 180
L+ V +H +V+ VL+ + + A RFF W +K +S+TYN M+ ++G
Sbjct: 226 LDECNVDLSHALVVGVLERFKHARKPAFRFFCWAGQKAGFTHNSRTYNAMMSVLGRTRQF 285
Query: 181 QEFWGLVDVMKKKGYGVASHVRNKMTEKFEKEGLESDLEKLKGIFATG---SIDNSIEKV 237
+ G++ M +KG + + + +K G+F + D ++ +
Sbjct: 286 ESMMGMLGEMGEKGL----LTMETFSIAIKAFAAAKERKKAVGVFELMKRYNFDAGVDTI 341
Query: 238 ASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALI--FFRWAE--E 293
+ + R+ + G + + L F+ +L + V G K L+ W E +
Sbjct: 342 NCLLDNLGRAKL-GKEAQALFEKLEDRFTPNLRTYTVLLNGWCRIKNLVEAGRTWNEMID 400
Query: 294 SGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVK 353
GF K D +++ M L + K+ + M++KG + T ++ ++ +K
Sbjct: 401 KGF-KPDIIAHHTMLEGLLKCKKKSDAIKLFEVMKAKGPSPNVRTYTILIRDLCKQMKMK 459
Query: 354 EAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNS 413
EAV+ ++ + +P T L+ K++D ++++ +++ +E G N+
Sbjct: 460 EAVEYFDEMVDSGCQPDAAVYTCLITGFGNQKKMD-KVYA-LLKEMKEKGCPADGRTYNA 517
Query: 414 VLKALISVGRMGECNKILKAMEEGGF---IASSNMKSKIAFRLSSAGKKDEANEFMDHME 470
++K + + + +I K M + G + + NM K F + + M
Sbjct: 518 LIKLMTNRQMPDDAVRIYKKMIQNGIQPTLHTYNMMMKSYFYTRNY---EMGCAVWKEMG 574
Query: 471 ASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEK 507
G D ++ I G G ++A ++M+EK
Sbjct: 575 RKGCCPDDNSYIVFIGGLIRHGRSEEACRYLEEMIEK 611
>gi|255574572|ref|XP_002528197.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223532409|gb|EEF34204.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 642
Score = 81.3 bits (199), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 104/429 (24%), Positives = 177/429 (41%), Gaps = 38/429 (8%)
Query: 231 DNSIEKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRW 290
D S K+ R ++++ WG D E+ L L + + LV V+ K+ E + FF+W
Sbjct: 58 DTSTRKLDERFIRILKIFKWGPDAEKALEVLKLKVDHRLVHEVL-KIDVEINVKIQFFKW 116
Query: 291 AEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEM-RSKG---YEMEMETCVKVLGRF 346
A + +HD SS+ A+ L WK + +M RS + + VK+LG+
Sbjct: 117 AGKRRNFEHDSSSFMALIHSLDEAGFYGEMWKTIQDMVRSSTCVISSVYLSEIVKLLGK- 175
Query: 347 SERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRE---NG 403
MV +A+ ++ K KP+ ++ + L+ KV ++ E +G
Sbjct: 176 --AKMVNKALSVFYQIKGRKCKPAATTYNSMILMLKQEGHLE-----KVHEIYNEMCNDG 228
Query: 404 NVLTDAMLNSVLKALISV-GRMGECN---KILKAMEEGGFIASSNMKSKIAFRLSSAGKK 459
N D + S ALIS G++G + ++ M+E G ++ + + + K
Sbjct: 229 NCFPDTVTYS---ALISAFGKLGHYDSAIRLFDEMKENGLYPTAKIYTTLLGIYFKLDKV 285
Query: 460 DEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDL 519
++A + + M+ G + + IKG AG +D A F M+ K+G I+
Sbjct: 286 EKALDVIKEMKDKGCTLTVFTYTEWIKGLGKAGRVDDAYRVFLDMI-KDGCKPDVVLINS 344
Query: 520 LVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLL-VQRGFKDALSLLCLMKD 578
L+N R K + + KP TY +IK L + +A S MK
Sbjct: 345 LINILGKVGRLEVTLKLFRK-MESWQCKPNVVTYNTVIKALFECKAPASEAASWFEKMKG 403
Query: 579 HGFPP-------FVDPFIKYVSKSGTSDDAIAFLKGMTSKRFPSMSVVLC-LFAAFFQAR 630
G P +D F K+ + A+ L+ M K FP C L + + +
Sbjct: 404 CGIAPSSFTYSILIDGF----CKTNRIEKALLLLEEMDEKGFPPCPAAYCSLINSLGKVK 459
Query: 631 RHSEAQDLL 639
R+ A +L
Sbjct: 460 RYEAANELF 468
>gi|297821162|ref|XP_002878464.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297324302|gb|EFH54723.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 628
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 99/443 (22%), Positives = 183/443 (41%), Gaps = 41/443 (9%)
Query: 240 RICKVVRSDIWGD-DVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVK 298
R+CKV+ D ++E L ++ V S+DL+ V+++ K A FF WA E
Sbjct: 142 RVCKVIDELFALDRNMEAVLDEMKVELSHDLIVKVLERFRHARKPAFRFFCWAAEKQGFA 201
Query: 299 HDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDL 358
HD +YN+M S+L + + VL+EM +KG + MET + F+ K+AV +
Sbjct: 202 HDSRTYNSMMSILAKTRQFETMVSVLEEMGTKGL-LTMETFTIAMKAFAAAKERKKAVGI 260
Query: 359 YEFAMACKNK---PSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFREN------------- 402
+E K K ++NC L + + K+ + LF K+ F N
Sbjct: 261 FELMKKYKFKIGVETINCLLDSLGRAKLGKEAQV-LFDKLKERFTPNMMTYTVLLNGWCR 319
Query: 403 ----------GNVLTDAML-------NSVLKALISVGRMGECNKILKAMEEGGFIASSNM 445
N + D L N +L+ L+ + + K+ M+ G +
Sbjct: 320 VRNLIEAARIWNDMIDQGLKPDIVAHNVMLEGLLRSRKKSDAIKLFHVMKSKGPCPNVRS 379
Query: 446 KSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMV 505
+ + + A E+ D M SG ++ LI G LD + ++M
Sbjct: 380 YTIMIRDFCKQSSMETAIEYFDDMVDSGLQPDAAVYTCLITGFGTQKKLDTVYELLKEMQ 439
Query: 506 EKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRG 565
EK G G + L+ ++ A + ++N + + +++P T+ ++K+ + R
Sbjct: 440 EK-GHPPDGKTYNALIKLMANQKMPEHATR-IYNKMIQNEIEPSIHTFNMIMKSYFMARN 497
Query: 566 FKDALSLLCLMKDHGFPPFVDPF---IKYVSKSGTSDDAIAFLKGMTSKRFPSMSVVLCL 622
++ ++ M G P + + I+ + G S +A +L+ M K + +
Sbjct: 498 YEMGSAVWDEMIKKGICPDDNSYTVLIRGLIGEGKSREACRYLEEMLDKGMKTPLIDYNK 557
Query: 623 FAAFFQARRHSEAQDLLSKCPRY 645
FAA F E + L++ ++
Sbjct: 558 FAADFHKGGQPEIFEELAQRAKF 580
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 82/441 (18%), Positives = 172/441 (39%), Gaps = 82/441 (18%)
Query: 126 VVFTHEMVLKVLKNLESSPDEARRFFNWVLEKESERLSSKTYNLMLRIV----------- 174
V +H++++KVL+ + A RFF W EK+ S+TYN M+ I+
Sbjct: 166 VELSHDLIVKVLERFRHARKPAFRFFCWAAEKQGFAHDSRTYNSMMSILAKTRQFETMVS 225
Query: 175 -----GVHGLV------------------QEFWGLVDVMKKKGYGVASHVRNKMTEKFEK 211
G GL+ ++ G+ ++MKK + + N + + +
Sbjct: 226 VLEEMGTKGLLTMETFTIAMKAFAAAKERKKAVGIFELMKKYKFKIGVETINCLLDSLGR 285
Query: 212 EGLESD----LEKLKGIFATGSIDNSIEKVASRICKVVR----SDIWGDDVERQLRD--- 260
L + +KLK F + ++ + + C+V + IW D +++ L+
Sbjct: 286 AKLGKEAQVLFDKLKERFTPNMMTYTV--LLNGWCRVRNLIEAARIWNDMIDQGLKPDIV 343
Query: 261 ---------LNVTFSNDLVKF--VVDKLGDEP------------------KKALIFFRWA 291
L +D +K V+ G P + A+ +F
Sbjct: 344 AHNVMLEGLLRSRKKSDAIKLFHVMKSKGPCPNVRSYTIMIRDFCKQSSMETAIEYFDDM 403
Query: 292 EESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNM 351
+SG ++ D + Y + + G + +D +++L EM+ KG+ + +T ++ + + M
Sbjct: 404 VDSG-LQPDAAVYTCLITGFGTQKKLDTVYELLKEMQEKGHPPDGKTYNALIKLMANQKM 462
Query: 352 VKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAML 411
+ A +Y + + +PS++ +++ +++ +M S V + G D
Sbjct: 463 PEHATRIYNKMIQNEIEPSIHTFNMIMKSYFMARNYEMG--SAVWDEMIKKGICPDDNSY 520
Query: 412 NSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEA 471
+++ LI G+ E + L+ M + G +K A G+ + E +
Sbjct: 521 TVLIRGLIGEGKSREACRYLEEMLDKGMKTPLIDYNKFAADFHKGGQPEIFEELAQRAKF 580
Query: 472 SGSDVGDKM---WVSLIKGHC 489
SG ++ W + + C
Sbjct: 581 SGKFAAAEIFARWAQMTRRRC 601
>gi|357150687|ref|XP_003575543.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g06400, mitochondrial-like [Brachypodium distachyon]
Length = 1109
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 79/361 (21%), Positives = 157/361 (43%), Gaps = 21/361 (5%)
Query: 230 IDNSIEKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFR 289
IDN I R+ +V+RS++ G VE++L +L VT++ LV V+++ + FF
Sbjct: 168 IDN-ISADVQRVTEVLRSEVPGSPVEQRLGNLGVTYTPRLVNMVLNRCFKKRHLGCRFFY 226
Query: 290 WAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSER 349
W ++ +H +YN M + G E +++DEM + +++T ++ + +
Sbjct: 227 WVKQLPGFRHTTETYNTMMYIAGEERSFGLMVELMDEMDQEMCPKDVKTWTIIIASYGK- 285
Query: 350 NMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMR--LFSKVVRVFRENGNVLT 407
++ ++ A K SV T + R+I+ + D R L + + +N +V +
Sbjct: 286 --ARKTSNMLSTFHAMKKSGSVTVDTHVYRRILRALCNDARHELALEFYKDMPKNMDVGS 343
Query: 408 DAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAF-----RLSSAGKKDEA 462
D + L+ G N + + S+ + + +GK EA
Sbjct: 344 D------ILRLLLCLLAGANNAEAVFLIRDDMVKSTRYPEEYCYLEVLRSFCVSGKIVEA 397
Query: 463 NEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVN 522
+ M D + +L++G C +G +D+A + M + S + L++
Sbjct: 398 QKVFQQMTNKSMD-SSSAFETLLRGLCKSGRMDEALQVMEHMKNRSCISSTAFG--FLID 454
Query: 523 TYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFP 582
Y K + A + + +REY P ++Y +L+++L ++ A L M+ +G P
Sbjct: 455 GYLRKGERMKALELLRG-MREYGCVPLASSYTQLMQHLFTFDQYEAACELYEEMQKNGVP 513
Query: 583 P 583
P
Sbjct: 514 P 514
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 83/390 (21%), Positives = 154/390 (39%), Gaps = 22/390 (5%)
Query: 228 GSIDNSIEKVASRICKVVRS-DIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALI 286
G D +E+ +C+V+ S D W +++ L + F+ +LV V+ + + AL
Sbjct: 683 GYCDEDVEE----MCQVLSSSDNWSL-MQQALEMKPLQFTPNLVNAVMKRCKRKGHAALK 737
Query: 287 FFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRF 346
FF W + H +YN + G + EM ++T ++ ++
Sbjct: 738 FFSWVSRLTYYMHTTETYNTAMKLAGSAKDFKHMRHLYREMAGAQCSPTVDTWNVMICQY 797
Query: 347 SERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVL 406
+ + A+D + +P L+ + K + K+++ G +L
Sbjct: 798 GNAGLSEMALDTFYQMKQQGFQPDKTTYNHLIMYLSRRKGRKVGAAVKILKEMIHAGYLL 857
Query: 407 TDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFM 466
+ +L + L AL G + E L ++ + GF + S + L + +K+EA
Sbjct: 858 DNEVLCTHLSALCECGMLVEARSSLVSLCKQGFAIQAGY-SILLRSLCRSDRKEEAVSLF 916
Query: 467 DHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEK-EGTSHAGYAIDLLVNT-- 523
D +E G D M+ SLI H + DCF+ V K +AG + T
Sbjct: 917 DDVEKYGCSRNDYMYGSLI--HALL-----RWDCFEDAVAKFAEMKNAGIRQSTHMYTSF 969
Query: 524 --YCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGF 581
Y + R + + + E +P TY LI+ + +A + MK G
Sbjct: 970 IIYFFRKRDVAKAVDMFKEMAENGCEPTVITYSALIRGYMGMGMVSEAWDVFERMKLKGP 1029
Query: 582 PPFVDP---FIKYVSKSGTSDDAIAFLKGM 608
P + F+ ++ K+G S+D + + M
Sbjct: 1030 SPDFETYSMFMTFLCKAGRSEDGLQLIHDM 1059
>gi|242033891|ref|XP_002464340.1| hypothetical protein SORBIDRAFT_01g016560 [Sorghum bicolor]
gi|241918194|gb|EER91338.1| hypothetical protein SORBIDRAFT_01g016560 [Sorghum bicolor]
Length = 758
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 82/354 (23%), Positives = 144/354 (40%), Gaps = 45/354 (12%)
Query: 300 DESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLY 359
D +YN + + L + +D ++++M +G + T ++ S +N ++EA+DL
Sbjct: 336 DVFTYNTVINCLSKNGELDEAKGIVNQMVDRGCLPDTTTFNTLIVALSSQNRLEEALDLA 395
Query: 360 EFAMACKNKPSVNCCTFLLRKI--VVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKA 417
P V L+ + V L +RLF ++ + +G + N ++
Sbjct: 396 RELTVKGLSPDVYTFNILINALCKVGDPHLGIRLFEEM----KSSGCTPDEVTYNILIDH 451
Query: 418 LISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVG 477
L S+G++G +L ME G S+ + I L + +EA E D M+A G
Sbjct: 452 LCSMGKLGNALDLLNEMESNGCPRSTVTYNTIIDALCKKMRIEEAEEVFDQMDAQGISRS 511
Query: 478 DKMWVSLIKGHCVAGDLDKAADCFQKMVEK-----------------------------E 508
+ +LI G C A +D A + ++MV++ E
Sbjct: 512 AVTFNTLIDGLCKAKRIDDATELIEQMVKEGLQPNNITYNSILTHYCKQGNIKKAADILE 571
Query: 509 GTSHAGYAIDL-----LVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQ 563
+ G+ ID+ L+N C R A K + +R ++P Y +I++L +
Sbjct: 572 TMTANGFEIDVVTYGTLINGLCKAGRTQVALKLLRG-MRIKGIRPTPKAYNPVIQSLFRR 630
Query: 564 RGFKDALSLLCLMKDHGFPP----FVDPFIKYVSKSGTSDDAIAFLKGMTSKRF 613
+DAL+L M + G PP + F G +A FL M +K F
Sbjct: 631 NNLRDALNLFREMTEVGEPPDALTYKIVFRSLCRGGGPIKEAFDFLVEMVNKGF 684
Score = 52.4 bits (124), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 101/489 (20%), Positives = 194/489 (39%), Gaps = 31/489 (6%)
Query: 141 ESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASH 200
+S P+ A R N L +E SS Y +++ +G G GLV M+++G+ V +
Sbjct: 66 QSDPEAALRMLNSALAREDFAPSSAVYEEIVQKLGTAGAFDLMEGLVREMRREGHQVRAV 125
Query: 201 VRNKMTEKFEK-----EGLESDLEKLK----GIFATGSIDNSIEKVASRICKV-VRSDIW 250
V E + + + ++ L +L G+ A + N + V K+ + ++
Sbjct: 126 VVRSFVESYARLRRFDDAVDLVLNQLDNDTFGVQADTVVFNHLLNVLVEGSKLKLLESVY 185
Query: 251 GDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASV 310
+ R ++ VT N L+K + + + A++ G V DE+++ +
Sbjct: 186 NEMTGRGIQPDVVTL-NTLIKALCR--AHQVRTAVLMLEEMSSHG-VAPDETTFTTLMQG 241
Query: 311 LGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKP- 369
E I+ +V +M G T ++ + + V++A+ + +A +P
Sbjct: 242 FIEEGSIEAALRVKAKMMEAGCSPTGVTVNVLINGYCKMGRVEDALGYIQQEIADGFEPD 301
Query: 370 SVNCCTF---LLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGE 426
V TF L + VS L KV+ + + G+ N+V+ L G + E
Sbjct: 302 QVTYNTFVHGLCQNGHVSHAL------KVMDLMLQEGHDPDVFTYNTVINCLSKNGELDE 355
Query: 427 CNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIK 486
I+ M + G + + + + LSS + +EA + + G + LI
Sbjct: 356 AKGIVNQMVDRGCLPDTTTFNTLIVALSSQNRLEEALDLARELTVKGLSPDVYTFNILIN 415
Query: 487 GHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDL 546
C GD F++M + G + ++L++ CS + +A ++ E +
Sbjct: 416 ALCKVGDPHLGIRLFEEM-KSSGCTPDEVTYNILIDHLCSMGKLGNALDLLNEM--ESNG 472
Query: 547 KPWHT-TYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPF---IKYVSKSGTSDDAI 602
P T TY +I L + ++A + M G F I + K+ DDA
Sbjct: 473 CPRSTVTYNTIIDALCKKMRIEEAEEVFDQMDAQGISRSAVTFNTLIDGLCKAKRIDDAT 532
Query: 603 AFLKGMTSK 611
++ M +
Sbjct: 533 ELIEQMVKE 541
>gi|449463822|ref|XP_004149630.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g49730-like [Cucumis sativus]
Length = 641
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 93/428 (21%), Positives = 167/428 (39%), Gaps = 45/428 (10%)
Query: 254 VERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGR 313
+E L++ V + L + V+ + GD FF WA + +H Y AM LG+
Sbjct: 94 LELALQESGVIMRSGLPERVLSRCGDAGNLGYRFFVWASKQPGYRHSYEVYKAMIKTLGK 153
Query: 314 EDCIDRFWKVLDEMRSKG-YEMEMETCVKVLGRFSERNMVKEAV-------------DLY 359
W +++EMR + Y + E + ++ RF+ MVK+AV D Y
Sbjct: 154 MRQFGAVWALIEEMRKENPYMLTPEVFIVLMRRFASVRMVKKAVEVLDEMPKYGCEPDEY 213
Query: 360 EFA----MACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTD------- 408
F CKN SV L + V ++R F+ ++ + G ++
Sbjct: 214 VFGCLLDALCKNG-SVKEAASLFEDMRVRFNPNLRHFTSLLYGWCREGKIMEAKHVLVQI 272
Query: 409 ---------AMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKK 459
+ N++L G+M + +L M++ ++ + + K
Sbjct: 273 KEAGFEPDIVVYNNLLGGYAQAGKMRDAFDLLAEMKKVNCGPNAASFTILIQSFCKTEKM 332
Query: 460 DEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEK-EGTSHAGYAID 518
DEA M+ SG + + +LI G C G+ DKA + M++K S Y
Sbjct: 333 DEAMRIFTEMQGSGCEADVVTYTTLISGFCKWGNTDKAYEILDDMIQKGHDPSQLSYLCI 392
Query: 519 LLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKD 578
++ + K ++ C + +R+ P Y +I+ + K+A+ L M+
Sbjct: 393 MMAH---EKKEELEECMELIEEMRKIGCVPDLNIYNTMIRLVCKLGDLKEAVRLWGEMQA 449
Query: 579 HGFPPFVDPFIKYVS---KSGTSDDAIAFLKGMTSKRF---PSMSVVLCLFAAFFQARRH 632
G P +D +I V G +A + K M + P + L A +A +
Sbjct: 450 GGLNPGLDTYILMVHGFLSQGCLVEACDYFKEMVERGLLSAPQYGTLKELTNALLRAEKL 509
Query: 633 SEAQDLLS 640
A+++ S
Sbjct: 510 EMAKNMWS 517
>gi|15241508|ref|NP_196986.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75173968|sp|Q9LEQ7.1|PP382_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At5g14820, mitochondrial; Flags: Precursor
gi|9755750|emb|CAC01881.1| putative protein [Arabidopsis thaliana]
gi|332004697|gb|AED92080.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 598
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 101/451 (22%), Positives = 185/451 (41%), Gaps = 43/451 (9%)
Query: 215 ESDLEKLKGIFATGSIDNSIEKVASRICKVVRSDIWGD-DVERQLRDLNVTFSNDLVKFV 273
E D ++ G+ S N E R+CKV+ D ++E L ++ + S+DL+ V
Sbjct: 109 ECDNDEETGVSCVESSTNPEE--VERVCKVIDELFALDRNMEAVLDEMKLDLSHDLIVEV 166
Query: 274 VDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYE 333
+++ K A FF WA E HD +YN+M S+L + + VL+EM +KG
Sbjct: 167 LERFRHARKPAFRFFCWAAERQGFAHDSRTYNSMMSILAKTRQFETMVSVLEEMGTKGL- 225
Query: 334 MEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNK---PSVNCCTFLLRKIVVSKQLDMR 390
+ MET + F+ K+AV ++E K K ++NC L + + K+ +
Sbjct: 226 LTMETFTIAMKAFAAAKERKKAVGIFELMKKYKFKIGVETINCLLDSLGRAKLGKEAQV- 284
Query: 391 LFSKVVRVFREN--------------GNVLTDAML----------------NSVLKALIS 420
LF K+ F N N++ A + N +L+ L+
Sbjct: 285 LFDKLKERFTPNMMTYTVLLNGWCRVRNLIEAARIWNDMIDHGLKPDIVAHNVMLEGLLR 344
Query: 421 VGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKM 480
+ + K+ M+ G + + + + A E+ D M SG +
Sbjct: 345 SMKKSDAIKLFHVMKSKGPCPNVRSYTIMIRDFCKQSSMETAIEYFDDMVDSGLQPDAAV 404
Query: 481 WVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNC 540
+ LI G LD + ++M EK G G + L+ ++ + ++N
Sbjct: 405 YTCLITGFGTQKKLDTVYELLKEMQEK-GHPPDGKTYNALIKLMANQKMPEHGTR-IYNK 462
Query: 541 VREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPF---IKYVSKSGT 597
+ + +++P T+ ++K+ V R ++ ++ M G P + + I+ + G
Sbjct: 463 MIQNEIEPSIHTFNMIMKSYFVARNYEMGRAVWDEMIKKGICPDDNSYTVLIRGLISEGK 522
Query: 598 SDDAIAFLKGMTSKRFPSMSVVLCLFAAFFQ 628
S +A +L+ M K + + FAA F
Sbjct: 523 SREACRYLEEMLDKGMKTPLIDYNKFAADFH 553
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 83/474 (17%), Positives = 188/474 (39%), Gaps = 89/474 (18%)
Query: 95 EQKESDFTVVSDIFYKFSDVNDISKQLELSGVVFTHEMVLKVLKNLESSPDEARRFFNWV 154
E+ E V+ ++F ++ + +++L +H+++++VL+ + A RFF W
Sbjct: 128 EEVERVCKVIDELFALDRNMEAVLDEMKLD---LSHDLIVEVLERFRHARKPAFRFFCWA 184
Query: 155 LEKESERLSSKTYNLMLRIV----------------GVHGLV------------------ 180
E++ S+TYN M+ I+ G GL+
Sbjct: 185 AERQGFAHDSRTYNSMMSILAKTRQFETMVSVLEEMGTKGLLTMETFTIAMKAFAAAKER 244
Query: 181 QEFWGLVDVMKKKGYGVASHVRNKMTEKFEKEGLESD----LEKLKGIFATGSIDNSIEK 236
++ G+ ++MKK + + N + + + L + +KLK F + ++
Sbjct: 245 KKAVGIFELMKKYKFKIGVETINCLLDSLGRAKLGKEAQVLFDKLKERFTPNMMTYTV-- 302
Query: 237 VASRICKVVR----SDIWGDDVERQLRD------------LNVTFSNDLVKF--VVDKLG 278
+ + C+V + IW D ++ L+ L +D +K V+ G
Sbjct: 303 LLNGWCRVRNLIEAARIWNDMIDHGLKPDIVAHNVMLEGLLRSMKKSDAIKLFHVMKSKG 362
Query: 279 DEP------------------KKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRF 320
P + A+ +F +SG ++ D + Y + + G + +D
Sbjct: 363 PCPNVRSYTIMIRDFCKQSSMETAIEYFDDMVDSG-LQPDAAVYTCLITGFGTQKKLDTV 421
Query: 321 WKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRK 380
+++L EM+ KG+ + +T ++ + + M + +Y + + +PS++ +++
Sbjct: 422 YELLKEMQEKGHPPDGKTYNALIKLMANQKMPEHGTRIYNKMIQNEIEPSIHTFNMIMKS 481
Query: 381 IVVSKQLDM--RLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGG 438
V++ +M ++ ++++ G D +++ LIS G+ E + L+ M + G
Sbjct: 482 YFVARNYEMGRAVWDEMIK----KGICPDDNSYTVLIRGLISEGKSREACRYLEEMLDKG 537
Query: 439 FIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKM---WVSLIKGHC 489
+K A G+ + E + SG ++ W + + C
Sbjct: 538 MKTPLIDYNKFAADFHRGGQPEIFEELAQRAKFSGKFAAAEIFARWAQMTRRRC 591
Score = 39.7 bits (91), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 34/145 (23%), Positives = 63/145 (43%), Gaps = 7/145 (4%)
Query: 501 FQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNL 560
F K+ E+ + Y + L+N +C I+A + ++ + ++ LKP + +++ L
Sbjct: 286 FDKLKERFTPNMMTYTV--LLNGWCRVRNLIEAARIWNDMI-DHGLKPDIVAHNVMLEGL 342
Query: 561 LVQRGFKDALSLLCLMKDHGFPPFVDPF---IKYVSKSGTSDDAIAFLKGMTSKRF-PSM 616
L DA+ L +MK G P V + I+ K + + AI + M P
Sbjct: 343 LRSMKKSDAIKLFHVMKSKGPCPNVRSYTIMIRDFCKQSSMETAIEYFDDMVDSGLQPDA 402
Query: 617 SVVLCLFAAFFQARRHSEAQDLLSK 641
+V CL F ++ +LL +
Sbjct: 403 AVYTCLITGFGTQKKLDTVYELLKE 427
>gi|449449535|ref|XP_004142520.1| PREDICTED: pentatricopeptide repeat-containing protein At5g18390,
mitochondrial-like [Cucumis sativus]
gi|449518358|ref|XP_004166209.1| PREDICTED: pentatricopeptide repeat-containing protein At5g18390,
mitochondrial-like [Cucumis sativus]
Length = 455
Score = 80.1 bits (196), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 84/391 (21%), Positives = 161/391 (41%), Gaps = 29/391 (7%)
Query: 241 ICKVVRSDIWGDDVERQLRDLNVT-FSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKH 299
I +VR D + +ER L L ++ +++LV V+ + ++ FF WA H
Sbjct: 48 ISHIVRRDFY---MERTLNKLRISNLNSELVFRVLRACSNSGTESFRFFNWA-----CSH 99
Query: 300 DES------SYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVK 353
+ S + + L R WKVL +M+++ ++ ET ++ + ++ +V
Sbjct: 100 NPSYQPTTLEFEELVKTLARTRKYTTMWKVLLQMKTQNLKISPETISFIIQEYGKQGLVD 159
Query: 354 EAVDLYEFAMACKNKPSVNCC-TFLLRKIVVSKQLDMRLFS---KVVRVFRENGNVLTDA 409
AV ++ + S++C T + ++ ++++F ++R G
Sbjct: 160 NAVTIFN-----QCSKSIDCPQTVEVYNALLFALCEVKMFHGAYALIRRMIRKGVTPDKK 214
Query: 410 MLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHM 469
+++ S G+M E + L+ M + GF + + L +AG + A + + M
Sbjct: 215 TYGTLVTGWCSAGKMKEAQEFLEEMSQKGFNPPLRGRDLLVEGLLNAGYLESAKDMVRKM 274
Query: 470 EASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNR 529
GS + SLI C +G++D + F + V K G +L+ R
Sbjct: 275 TKEGSVPDIGTFNSLIDVICNSGEVDFCINIFHE-VCKLGLCPDINTYKILIPATSKVGR 333
Query: 530 AIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFP---PFVD 586
+A + +H C+ + + P+ + Y ++K + + F DA MK G P P
Sbjct: 334 IDEAFRLLHCCIEDGHV-PFPSLYGPILKGMCKRGQFDDAFCFFGDMKHKGHPPNRPVYT 392
Query: 587 PFIKYVSKSGTSDDAIAFLKGMTSKRFPSMS 617
I + G DA +L M P +S
Sbjct: 393 MLITMCGRGGRFVDAANYLMEMAELGLPPIS 423
>gi|147801213|emb|CAN73209.1| hypothetical protein VITISV_002838 [Vitis vinifera]
Length = 1024
Score = 79.7 bits (195), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 91/397 (22%), Positives = 164/397 (41%), Gaps = 38/397 (9%)
Query: 236 KVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESG 295
K + + +++ ++ W +++ L +L + S V + +L P KAL FFRW E G
Sbjct: 157 KRSQAMARLINTEPWSHELQSSLAELAPSLSKTTVLQTL-QLIRTPAKALHFFRWVEAKG 215
Query: 296 FVKHDESSYNAMASVLGREDCID----------------RFWKVLDEMRSKGYEMEMETC 339
F H+E SY M +LGR ++ KV M+ G + T
Sbjct: 216 FT-HNEQSYFLMIEILGRSRNLNAARNFVFSIEKKSGGAESIKVFKTMKEIGVSPSVVTF 274
Query: 340 VKVLGRFSERNMVKEAVDLYEFAMACKN-KPSVNCCTFLLRKIVVSKQLDMRL-FSKVVR 397
+L +R A L++ + P L+R ++ +D F K +
Sbjct: 275 NSLLSIVLKRGRTSMAKQLFDEMLDTYGVTPDTYTFNILIRGFCMNSMVDEGFWFFKEMS 334
Query: 398 VFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAG 457
F+ + +V+T N+++ L G++ + ++K M + S N+ +
Sbjct: 335 RFKCDPDVVT---YNTLVDGLCRAGKVKIAHNVVKGMVKKSPNLSPNVVTYTTLIRGYCM 391
Query: 458 KKD--EANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGY 515
K+D EA + M + G + +LI+G C A LDK + + MV G
Sbjct: 392 KQDMAEALSLLAEMVSRGLKPNKITYNTLIQGLCEAQKLDKIKEILEGMVGDGGFIPDTC 451
Query: 516 AIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRG--------FK 567
++ L+ +C+ + +A V + E ++P TY L+++ L QRG F
Sbjct: 452 TLNTLIKAHCTMGKLEEAFS-VFEKMSELRVQPDSATYSVLVRS-LCQRGDFRRAEEFFD 509
Query: 568 DALSLLCLMKDHGFPPFV---DPFIKYVSKSGTSDDA 601
+ L+ D G P V +P +Y+ +G + A
Sbjct: 510 ELAEKEILLHDVGCKPLVAAYNPMFEYLCSNGKTKKA 546
Score = 41.2 bits (95), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 49/233 (21%), Positives = 92/233 (39%), Gaps = 17/233 (7%)
Query: 412 NSVLKALISVGRMGECNKILKAM-EEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHME 470
N++++ L ++ + +IL+ M +GGFI + + + + GK +EA + M
Sbjct: 418 NTLIQGLCEAQKLDKIKEILEGMVGDGGFIPDTCTLNTLIKAHCTMGKLEEAFSVFEKMS 477
Query: 471 ASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKE------GTSHAGYAIDLLVNTY 524
+ L++ C GD +A + F ++ EKE G A + +
Sbjct: 478 ELRVQPDSATYSVLVRSLCQRGDFRRAEEFFDELAEKEILLHDVGCKPLVAAYNPMFEYL 537
Query: 525 CSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPF 584
CS + A + ++ P +Y+ LI + + LL LM F P
Sbjct: 538 CSNGKTKKAERVFRQLMKRGTQDP--PSYKTLILGHCREGTPEAGFDLLVLMLRRDFVPD 595
Query: 585 VDPF---IKYVSKSGTSDDAIA---FLKGMTSKRFPSMSVVLCLFAAFFQARR 631
+ + I + K G D +A K + S P+ ++ + AA + R
Sbjct: 596 AETYGLMIDGLLKKG--DPVLAHKSLEKMLKSSHLPTTAIFHSILAALVEKER 646
>gi|449494638|ref|XP_004159605.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g49730-like [Cucumis sativus]
Length = 664
Score = 79.7 bits (195), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 93/428 (21%), Positives = 167/428 (39%), Gaps = 45/428 (10%)
Query: 254 VERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGR 313
+E L++ V + L + V+ + GD FF WA + +H Y AM LG+
Sbjct: 117 LELALQESGVIMRSGLPERVLSRCGDAGNLGYRFFVWASKQPGYRHSYEVYKAMIKTLGK 176
Query: 314 EDCIDRFWKVLDEMRSKG-YEMEMETCVKVLGRFSERNMVKEAV-------------DLY 359
W +++EMR + Y + E + ++ RF+ MVK+AV D Y
Sbjct: 177 MRQFGAVWALIEEMRKENPYMLTPEVFIVLMRRFASVRMVKKAVEVLDEMPKYGCEPDEY 236
Query: 360 EFA----MACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTD------- 408
F CKN SV L + V ++R F+ ++ + G ++
Sbjct: 237 VFGCLLDALCKNG-SVKEAASLFEDMRVRFNPNLRHFTSLLYGWCREGKIMEAKHVLVQI 295
Query: 409 ---------AMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKK 459
+ N++L G+M + +L M++ ++ + + K
Sbjct: 296 KEAGFEPDIVVYNNLLGGYAQAGKMRDAFDLLAEMKKVNCGPNAASFTILIQSFCKTEKM 355
Query: 460 DEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEK-EGTSHAGYAID 518
DEA M+ SG + + +LI G C G+ DKA + M++K S Y
Sbjct: 356 DEAMRIFTEMQGSGCEADVVTYTTLISGFCKWGNTDKAYEILDDMIQKGHDPSQLSYLCI 415
Query: 519 LLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKD 578
++ + K ++ C + +R+ P Y +I+ + K+A+ L M+
Sbjct: 416 MMAH---EKKEELEECMELIEEMRKIGCVPDLNIYNTMIRLVCKLGDLKEAVRLWGEMQA 472
Query: 579 HGFPPFVDPFIKYVS---KSGTSDDAIAFLKGMTSKRF---PSMSVVLCLFAAFFQARRH 632
G P +D +I V G +A + K M + P + L A +A +
Sbjct: 473 GGLNPGLDTYILMVHGFLSQGCLVEACDYFKEMVERGLLSAPQYGTLKELTNALLRAEKL 532
Query: 633 SEAQDLLS 640
A+++ S
Sbjct: 533 EMAKNMWS 540
>gi|326491875|dbj|BAJ98162.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 628
Score = 79.7 bits (195), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 105/429 (24%), Positives = 178/429 (41%), Gaps = 36/429 (8%)
Query: 232 NSIEKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDK-LGDEPKKALIFFRW 290
+SI + R ++++ WG D E+ L L + + LV+ V+ +G K + FFRW
Sbjct: 51 HSIRVMDERFIRILKIFKWGPDAEKALEVLMMKVDHWLVREVMKTDVGVSVK--MQFFRW 108
Query: 291 AEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGY----EMEMETCVKVLGRF 346
A +HD S+Y A+ L + WK++ EM ME+ +++LG
Sbjct: 109 AARKRNYEHDTSTYMALIRCLEVVEQYGEMWKMIQEMVRNPVCVVTPMELSDIIRMLG-- 166
Query: 347 SERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRE---NG 403
M+ +AV ++ A K +P+ + ++ ++ + + KV ++ E G
Sbjct: 167 -NAKMISKAVAIFYQIKARKCQPTAHAYNSMIIMLMHEGE-----YEKVHELYNEMSNEG 220
Query: 404 NVLTDAMLNSVL-KALISVGRMGECNKILKAMEEGGFIASS---NMKSKIAFRLSSAGKK 459
D + S L A +GR +L M++ G ++ M + F+L +
Sbjct: 221 QCFPDTVTYSALISAFCKLGRQDSAIWLLNEMKDNGMQPTAKIYTMLMALLFKLDNVHGA 280
Query: 460 DEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDL 519
E M H + DV + LI+G AG LD+A + F +M +EG ++
Sbjct: 281 LGLFEEMRH-QYCRPDVFT--YTELIRGLGKAGRLDEAYNFFHEM-RREGCRPDTVLMNN 336
Query: 520 LVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRG-FKDALSLLCLMKD 578
++N R DA K + P TY +IK L + + S MK
Sbjct: 337 MINFLGKAGRLDDAIKLFEE-METLRCIPSVVTYNTIIKALFESKSRVSEISSWFERMKG 395
Query: 579 HGFPPFVDPF-----IKYVSKSGTSDDAIAFLKGMTSKRFPSMSVVLC-LFAAFFQARRH 632
G P PF I K+ ++ A+ L+ M K FP C L A +A+R+
Sbjct: 396 SGISP--SPFTYSILIDGFCKTNRTEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRY 453
Query: 633 SEAQDLLSK 641
A +L +
Sbjct: 454 DLANELFQE 462
Score = 52.4 bits (124), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 112/580 (19%), Positives = 208/580 (35%), Gaps = 103/580 (17%)
Query: 116 DISKQLELSGVVFTHEMVLKVLKNLESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVG 175
D K LE+ + H +V +V+K + +FF W K + + TY ++R +
Sbjct: 72 DAEKALEVLMMKVDHWLVREVMKT-DVGVSVKMQFFRWAARKRNYEHDTSTYMALIRCLE 130
Query: 176 VHGLVQEFWGLV-----------------DVMKKKG------------YGV-------AS 199
V E W ++ D+++ G Y + +
Sbjct: 131 VVEQYGEMWKMIQEMVRNPVCVVTPMELSDIIRMLGNAKMISKAVAIFYQIKARKCQPTA 190
Query: 200 HVRNKMTEKFEKEGLESDLEKLKGIFATGSIDN-------SIEKVASRICKVVRSD--IW 250
H N M EG + EK+ ++ S + + + S CK+ R D IW
Sbjct: 191 HAYNSMIIMLMHEG---EYEKVHELYNEMSNEGQCFPDTVTYSALISAFCKLGRQDSAIW 247
Query: 251 GDDVERQLRDLNVTFSNDLVKFVVDKLG--DEPKKALIFFRWAEESGFVKHDESSYNAMA 308
+ +++D + + + ++ L D AL F + + D +Y +
Sbjct: 248 ---LLNEMKDNGMQPTAKIYTMLMALLFKLDNVHGALGLFEEMRHQ-YCRPDVFTYTELI 303
Query: 309 SVLGREDCIDRFWKVLDEMRSKGYEME---METCVKVLGRFSERNMVKEAVDLYEFAMAC 365
LG+ +D + EMR +G + M + LG+ + +A+ L+E
Sbjct: 304 RGLGKAGRLDEAYNFFHEMRREGCRPDTVLMNNMINFLGKAGR---LDDAIKLFEEMETL 360
Query: 366 KNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMG 425
+ PSV +++ + SK + S R+ + +G + + ++ R
Sbjct: 361 RCIPSVVTYNTIIKALFESKSRVSEISSWFERM-KGSGISPSPFTYSILIDGFCKTNRTE 419
Query: 426 ECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLI 485
+ +L+ M+E GF + L A + D ANE ++ + +++ +I
Sbjct: 420 KAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDLANELFQELKENCGSSSARVYAVMI 479
Query: 486 KGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYD 545
K AG LD A D F +M + G + YA
Sbjct: 480 KHLGKAGRLDDAVDLFDEM-NRLGCTPNVYA----------------------------- 509
Query: 546 LKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPF---IKYVSKSGTSDDAI 602
Y L+ L +AL+ + M+DHG P ++ + + ++K+G D A+
Sbjct: 510 -------YNALMSGLARAGMLDEALTTMRRMQDHGCIPDINSYNIILNALAKTGGPDRAM 562
Query: 603 AFLKGMTSKRF-PSMSVVLCLFAAFFQARRHSEAQDLLSK 641
L M P + A A EA L+ +
Sbjct: 563 GMLCNMKQSAIKPDAVSYNTVLGALSHAGMFEEAAKLMKE 602
Score = 43.1 bits (100), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 61/319 (19%), Positives = 128/319 (40%), Gaps = 16/319 (5%)
Query: 166 TYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRNKMTEKFEKEG-------LESDL 218
TY ++R +G G + E + M+++G + + N M K G L ++
Sbjct: 298 TYTELIRGLGKAGRLDEAYNFFHEMRREGCRPDTVLMNNMINFLGKAGRLDDAIKLFEEM 357
Query: 219 EKLKGIFATGSIDNSIEKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKL- 277
E L+ I + + + I+ + +V W + +++ ++ S ++D
Sbjct: 358 ETLRCIPSVVTYNTIIKALFESKSRVSEISSWFE----RMKGSGISPSPFTYSILIDGFC 413
Query: 278 -GDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEM 336
+ +KA++ +E GF ++Y ++ LG+ D ++ E++
Sbjct: 414 KTNRTEKAMMLLEEMDEKGFPPC-PAAYCSLIDALGKAKRYDLANELFQELKENCGSSSA 472
Query: 337 ETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVV 396
++ + + +AVDL++ P+V L+ + + LD L + +
Sbjct: 473 RVYAVMIKHLGKAGRLDDAVDLFDEMNRLGCTPNVYAYNALMSGLARAGMLDEALTT--M 530
Query: 397 RVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSA 456
R +++G + N +L AL G +L M++ + + + LS A
Sbjct: 531 RRMQDHGCIPDINSYNIILNALAKTGGPDRAMGMLCNMKQSAIKPDAVSYNTVLGALSHA 590
Query: 457 GKKDEANEFMDHMEASGSD 475
G +EA + M M A G D
Sbjct: 591 GMFEEAAKLMKEMNAIGFD 609
>gi|242066030|ref|XP_002454304.1| hypothetical protein SORBIDRAFT_04g028250 [Sorghum bicolor]
gi|241934135|gb|EES07280.1| hypothetical protein SORBIDRAFT_04g028250 [Sorghum bicolor]
Length = 638
Score = 79.3 bits (194), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 104/436 (23%), Positives = 179/436 (41%), Gaps = 50/436 (11%)
Query: 232 NSIEKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDK-LGDEPKKALIFFRW 290
+S+ + R ++++ WG D E+ L L + + LV+ V+ +G K + FFRW
Sbjct: 55 HSVRVLDERFIRILKIFKWGPDAEKALEVLMLRVDHWLVREVMKTDIGVNVK--MQFFRW 112
Query: 291 AEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGY----EMEMETCVKVLGRF 346
A + +HD S+Y A+ L + WK++ EM E+ V++LG
Sbjct: 113 AAKRRNYEHDTSTYMALIRCLEVVEQYGEMWKMIQEMVRNPICVVTPTELSEVVRMLG-- 170
Query: 347 SERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRE---NG 403
MV +A+ ++ K +P+ ++ ++ Q + KV ++ E G
Sbjct: 171 -NAKMVSKAIAIFYQIKTRKCQPTAQAYNSMIIMLMHEGQ-----YGKVHELYNEMSTEG 224
Query: 404 NVLTDAMLNSVL-KALISVGRMGECNKILKAMEEGGFIASSNMKSKIA---FRLSSAGKK 459
+ D M S L A +GR ++L M+E G ++ + + + F+L
Sbjct: 225 HCFPDTMTYSALISAFCKLGRRDSATQLLNEMKENGMQPTTKIYTMLITLFFKLDDVHGA 284
Query: 460 DEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDL 519
E M H + DV + LI+G AG +D+A F +M ++EG ++
Sbjct: 285 LSLFEEMRH-QYCRPDVFT--YTELIRGLGKAGRIDEAYHFFYEM-QREGCRPDTVVMNN 340
Query: 520 LVNTYCSKNRAIDACKFVHN-----CVREYDLKPWHTTYEELIKNLLVQRG-FKDALSLL 573
++N R DA K C+ P TY +IK L + + S
Sbjct: 341 MINFLGKAGRLDDAMKLFQEMGTLRCI------PSVVTYNTIIKALFESKSRASEVPSWF 394
Query: 574 CLMKDHGFPP-------FVDPFIKYVSKSGTSDDAIAFLKGMTSKRFPSMSVVLC-LFAA 625
MK+ G P +D F K+ + A+ L+ M K FP C L A
Sbjct: 395 ERMKESGISPSSFTYSILIDGF----CKTNRMEKAMMLLEEMDEKGFPPCPAAYCSLIDA 450
Query: 626 FFQARRHSEAQDLLSK 641
+A+R+ A +L +
Sbjct: 451 LGKAKRYDLACELFQE 466
Score = 50.1 bits (118), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 100/543 (18%), Positives = 207/543 (38%), Gaps = 51/543 (9%)
Query: 116 DISKQLELSGVVFTHEMVLKVLKNLESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVG 175
D K LE+ + H +V +V+K + + +FF W ++ + + TY ++R +
Sbjct: 76 DAEKALEVLMLRVDHWLVREVMKT-DIGVNVKMQFFRWAAKRRNYEHDTSTYMALIRCLE 134
Query: 176 VHGLVQEFWGLVDVMKKKGYGVASHVRNKMTEKFEKEGLESDLEKLKGIF---ATGSIDN 232
V E W ++ M + V + +++E G + K IF T
Sbjct: 135 VVEQYGEMWKMIQEMVRNPICVVTP--TELSEVVRMLGNAKMVSKAIAIFYQIKTRKCQP 192
Query: 233 SIEKVASRICKVVRSDIWGD--------DVERQLRDLNVTFSNDLVKFV----------- 273
+ + S I ++ +G E +T+S + F
Sbjct: 193 TAQAYNSMIIMLMHEGQYGKVHELYNEMSTEGHCFPDTMTYSALISAFCKLGRRDSATQL 252
Query: 274 ---VDKLGDEPKKAL------IFFRWAEESG-----------FVKHDESSYNAMASVLGR 313
+ + G +P + +FF+ + G + + D +Y + LG+
Sbjct: 253 LNEMKENGMQPTTKIYTMLITLFFKLDDVHGALSLFEEMRHQYCRPDVFTYTELIRGLGK 312
Query: 314 EDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNC 373
ID + EM+ +G + ++ + + +A+ L++ + PSV
Sbjct: 313 AGRIDEAYHFFYEMQREGCRPDTVVMNNMINFLGKAGRLDDAMKLFQEMGTLRCIPSVVT 372
Query: 374 CTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKA 433
+++ + SK + S R+ +E+G + + ++ RM + +L+
Sbjct: 373 YNTIIKALFESKSRASEVPSWFERM-KESGISPSSFTYSILIDGFCKTNRMEKAMMLLEE 431
Query: 434 MEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGD 493
M+E GF + L A + D A E ++ + +++ +IK AG
Sbjct: 432 MDEKGFPPCPAAYCSLIDALGKAKRYDLACELFQELKENCGSSSARVYAVMIKHLGKAGR 491
Query: 494 LDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTY 553
LD A + F +M K G + YA + L++ ++ +D ++E+ P +Y
Sbjct: 492 LDDAINMFDEM-NKLGCAPDVYAYNALMSGL-ARTGMLDEALSTMRRMQEHGCIPDINSY 549
Query: 554 EELIKNLLVQRGFKDALSLLCLMKDHGFPPFV---DPFIKYVSKSGTSDDAIAFLKGMTS 610
++ L G A+ +L MK P V + + +S +G ++A ++ M +
Sbjct: 550 NIILNGLAKTGGPHRAMEMLSNMKQSTVRPDVVSYNTVLGALSHAGMFEEAAKLMEEMNT 609
Query: 611 KRF 613
F
Sbjct: 610 LGF 612
>gi|15228788|ref|NP_191813.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|122214682|sp|Q3EAF8.1|PP294_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At3g62540, mitochondrial; Flags: Precursor
gi|332646841|gb|AEE80362.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 599
Score = 79.3 bits (194), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 115/509 (22%), Positives = 210/509 (41%), Gaps = 52/509 (10%)
Query: 159 SERLSSKTYNLMLRIVGVHGLVQEFWGLVDV-MKKKGYGV-ASHVRNKMTEKFEKEGLES 216
S + S TY+ +I H VQ L+D + +G+ +S+V + E+ E E
Sbjct: 59 SRMIHSSTYHPYRQIPLPHSSVQ----LLDASLGCRGFSSGSSNVSDGCDEEVESE---C 111
Query: 217 DLEKLKGIFATGSIDNSIEKVASRICKVVRSDIWGD-DVERQLRDLNVTFSNDLVKFVVD 275
D ++ G+ S N E R+CKV+ D ++E L ++ + S+DL+ V++
Sbjct: 112 DNDEETGVSCVESSTNPEE--VERVCKVIDELFALDRNMEAVLDEMKLDLSHDLIVEVLE 169
Query: 276 KLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEME 335
+ K A FF WA E H +YN+M S+L + + VL+EM +KG +
Sbjct: 170 RFRHARKPAFRFFCWAAERQGFAHASRTYNSMMSILAKTRQFETMVSVLEEMGTKGL-LT 228
Query: 336 METCVKVLGRFSERNMVKEAVDLYEFAMACKNK---PSVNCCTFLLRKIVVSKQLDMRLF 392
MET + F+ K+AV ++E K K ++NC L + + K+ + LF
Sbjct: 229 METFTIAMKAFAAAKERKKAVGIFELMKKYKFKIGVETINCLLDSLGRAKLGKEAQV-LF 287
Query: 393 SKVVRVFREN--------------GNVLTDAML----------------NSVLKALISVG 422
K+ F N N++ A + N +L+ L+
Sbjct: 288 DKLKERFTPNMMTYTVLLNGWCRVRNLIEAARIWNDMIDHGLKPDIVAHNVMLEGLLRSM 347
Query: 423 RMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWV 482
+ + K+ M+ G + + + + A E+ D M SG ++
Sbjct: 348 KKSDAIKLFHVMKSKGPCPNVRSYTIMIRDFCKQSSMETAIEYFDDMVDSGLQPDAAVYT 407
Query: 483 SLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVR 542
LI G LD + ++M EK G G + L+ ++ + ++N +
Sbjct: 408 CLITGFGTQKKLDTVYELLKEMQEK-GHPPDGKTYNALIKLMANQKMPEHGTR-IYNKMI 465
Query: 543 EYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPF---IKYVSKSGTSD 599
+ +++P T+ ++K+ V R ++ ++ M G P + + I+ + G S
Sbjct: 466 QNEIEPSIHTFNMIMKSYFVARNYEMGRAVWDEMIKKGICPDDNSYTVLIRGLISEGKSR 525
Query: 600 DAIAFLKGMTSKRFPSMSVVLCLFAAFFQ 628
+A +L+ M K + + FAA F
Sbjct: 526 EACRYLEEMLDKGMKTPLIDYNKFAADFH 554
Score = 52.4 bits (124), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 83/474 (17%), Positives = 189/474 (39%), Gaps = 89/474 (18%)
Query: 95 EQKESDFTVVSDIFYKFSDVNDISKQLELSGVVFTHEMVLKVLKNLESSPDEARRFFNWV 154
E+ E V+ ++F ++ + +++L +H+++++VL+ + A RFF W
Sbjct: 129 EEVERVCKVIDELFALDRNMEAVLDEMKLD---LSHDLIVEVLERFRHARKPAFRFFCWA 185
Query: 155 LEKESERLSSKTYNLMLRIV----------------GVHGLV------------------ 180
E++ +S+TYN M+ I+ G GL+
Sbjct: 186 AERQGFAHASRTYNSMMSILAKTRQFETMVSVLEEMGTKGLLTMETFTIAMKAFAAAKER 245
Query: 181 QEFWGLVDVMKKKGYGVASHVRNKMTEKFEKEGLESD----LEKLKGIFATGSIDNSIEK 236
++ G+ ++MKK + + N + + + L + +KLK F + ++
Sbjct: 246 KKAVGIFELMKKYKFKIGVETINCLLDSLGRAKLGKEAQVLFDKLKERFTPNMMTYTV-- 303
Query: 237 VASRICKVVR----SDIWGDDVERQLRD------------LNVTFSNDLVKF--VVDKLG 278
+ + C+V + IW D ++ L+ L +D +K V+ G
Sbjct: 304 LLNGWCRVRNLIEAARIWNDMIDHGLKPDIVAHNVMLEGLLRSMKKSDAIKLFHVMKSKG 363
Query: 279 DEP------------------KKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRF 320
P + A+ +F +SG ++ D + Y + + G + +D
Sbjct: 364 PCPNVRSYTIMIRDFCKQSSMETAIEYFDDMVDSG-LQPDAAVYTCLITGFGTQKKLDTV 422
Query: 321 WKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRK 380
+++L EM+ KG+ + +T ++ + + M + +Y + + +PS++ +++
Sbjct: 423 YELLKEMQEKGHPPDGKTYNALIKLMANQKMPEHGTRIYNKMIQNEIEPSIHTFNMIMKS 482
Query: 381 IVVSKQLDM--RLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGG 438
V++ +M ++ ++++ G D +++ LIS G+ E + L+ M + G
Sbjct: 483 YFVARNYEMGRAVWDEMIK----KGICPDDNSYTVLIRGLISEGKSREACRYLEEMLDKG 538
Query: 439 FIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKM---WVSLIKGHC 489
+K A G+ + E + SG ++ W + + C
Sbjct: 539 MKTPLIDYNKFAADFHRGGQPEIFEELAQRAKFSGKFAAAEIFARWAQMTRRRC 592
Score = 39.7 bits (91), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 34/143 (23%), Positives = 62/143 (43%), Gaps = 7/143 (4%)
Query: 501 FQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNL 560
F K+ E+ + Y + L+N +C I+A + ++ + ++ LKP + +++ L
Sbjct: 287 FDKLKERFTPNMMTYTV--LLNGWCRVRNLIEAARIWNDMI-DHGLKPDIVAHNVMLEGL 343
Query: 561 LVQRGFKDALSLLCLMKDHGFPPFVDPF---IKYVSKSGTSDDAIAFLKGMTSKRF-PSM 616
L DA+ L +MK G P V + I+ K + + AI + M P
Sbjct: 344 LRSMKKSDAIKLFHVMKSKGPCPNVRSYTIMIRDFCKQSSMETAIEYFDDMVDSGLQPDA 403
Query: 617 SVVLCLFAAFFQARRHSEAQDLL 639
+V CL F ++ +LL
Sbjct: 404 AVYTCLITGFGTQKKLDTVYELL 426
>gi|255580475|ref|XP_002531063.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223529358|gb|EEF31324.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 533
Score = 79.0 bits (193), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 89/401 (22%), Positives = 175/401 (43%), Gaps = 18/401 (4%)
Query: 177 HGLVQEFWGLVDVMKKKGYGVASHVRNKMTEKFE-KEGLESDLEKLKGIFATGSIDNSIE 235
H ++Q F L V+K + + S R ++ + + +DLE+ IF I+++
Sbjct: 28 HLIIQSFINLQQVIKNQTFTRNSRGRALLSPHLNFQRSIHADLEQNPEIFTDKIIEDT-- 85
Query: 236 KVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESG 295
IC+++ + +E+ L + S LV V+ +L + AL FF+WAE+
Sbjct: 86 ---RNICRLLSKNP-NSSIEKLLLGASFKVSPALVLEVLKRLSNAGALALSFFKWAEKQK 141
Query: 296 FVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEA 355
++ SYNA+ LG+ + W ++++M+ KG + ET + R++ VKEA
Sbjct: 142 GFMYNTESYNALIDSLGKIKQFNMIWNLVNDMKRKGV-LTKETFALISRRYARSGKVKEA 200
Query: 356 VDLYEFAMACKNKPSVNCCTFLLRKIVVSKQL--DMRLFSKV-VRVFRENGNVLTDAMLN 412
++ +E K LL ++ S+Q+ +F K+ +R F + T
Sbjct: 201 MNTFEKMEKFGLKIESTDFNRLLDTLIKSRQVLSAQNVFDKMKIRRFVPDIKSYT----- 255
Query: 413 SVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEAS 472
+L+ + + +++ + M++ GF + K D+A E ME+
Sbjct: 256 ILLEGWGQEKNLLKLDEVYREMKDEGFEPDVVTYGILINAYCKVRKYDDAIELFREMESK 315
Query: 473 GSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAID 532
++ +LI G L +A + F++ + G + + +V YC R D
Sbjct: 316 NCQPSPHIFCTLINGLGSVRRLSEALEFFRR-SKASGFAPETPTYNAVVGAYCWSMRIDD 374
Query: 533 ACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLL 573
A + V +R+ + P TY+ ++ +L+ +A S+
Sbjct: 375 AYRMVDE-MRKSGVGPNSRTYDIILHHLIKAEKTTEAFSVF 414
Score = 62.8 bits (151), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 92/464 (19%), Positives = 181/464 (39%), Gaps = 79/464 (17%)
Query: 132 MVLKVLKNLESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLVDVMK 191
+VL+VLK L ++ A FF W +++ ++++YN ++ +G W LV+ MK
Sbjct: 115 LVLEVLKRLSNAGALALSFFKWAEKQKGFMYNTESYNALIDSLGKIKQFNMIWNLVNDMK 174
Query: 192 KKG-------------YGVASHVRNKMT--EKFEKEGLESDLEKLKGIFATGSIDNSIEK 236
+KG Y + V+ M EK EK GL+ + + T
Sbjct: 175 RKGVLTKETFALISRRYARSGKVKEAMNTFEKMEKFGLKIESTDFNRLLDT--------- 225
Query: 237 VASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGF 296
+++S RQ+ F ++ V D ++ W +E
Sbjct: 226 -------LIKS--------RQVLSAQNVFDKMKIRRFVP---DIKSYTILLEGWGQEKNL 267
Query: 297 VKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAV 356
+K DE V EM+ +G+E ++ T ++ + + +A+
Sbjct: 268 LKLDE---------------------VYREMKDEGFEPDVVTYGILINAYCKVRKYDDAI 306
Query: 357 DLYE--FAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRE---NGNVLTDAML 411
+L+ + C+ P + C +++ +R S+ + FR +G
Sbjct: 307 ELFREMESKNCQPSPHIFCT-------LINGLGSVRRLSEALEFFRRSKASGFAPETPTY 359
Query: 412 NSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEA 471
N+V+ A R+ + +++ M + G +S I L A K EA + M +
Sbjct: 360 NAVVGAYCWSMRIDDAYRMVDEMRKSGVGPNSRTYDIILHHLIKAEKTTEAFSVFEKMSS 419
Query: 472 SGS-DVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRA 530
+ + +++ C ++ A + +M K G + +L+N+ C +N+
Sbjct: 420 EEECEPTVSTYDIIVRMFCNMDKVESAIKVWDRMKAK-GVHPGMHMFSILINSLCHENKL 478
Query: 531 IDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLC 574
ACK+ + + ++P + L K L++ G KD + LL
Sbjct: 479 DIACKYFQEML-DVGIRPPAALFSHL-KQALIEDGRKDTVVLLA 520
>gi|297830178|ref|XP_002882971.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297328811|gb|EFH59230.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 642
Score = 78.6 bits (192), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 97/425 (22%), Positives = 179/425 (42%), Gaps = 30/425 (7%)
Query: 231 DNSIEKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRW 290
D S+ + R ++V+ WG D E+ L L + + LV+ +++ + E + FF+W
Sbjct: 57 DPSVRMLDERFIRIVKIFKWGPDAEKALEVLKLKVDHRLVRSILE-IDVEINVKIQFFKW 115
Query: 291 AEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGY----EMEMETCVKVLGRF 346
A + +HD S+Y A+ L ++ + E+ Y + + VK LGR
Sbjct: 116 AGKRRNFQHDCSTYMALIRCLEEARLYGEMYRTIQEVVRNTYVSVGPVVLSELVKALGR- 174
Query: 347 SERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRE---NG 403
MV +A+ ++ A K KP+ + ++ ++ Q + KV V+ E G
Sbjct: 175 --AKMVSKALSVFYQAKGRKCKPTSSTYNSVILMLMQEGQHE-----KVHEVYTEMCNEG 227
Query: 404 NVLTDAMLNSVLKALIS----VGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKK 459
+ D + S ALIS +GR ++ M++ + + + + GK
Sbjct: 228 DCFPDTITYS---ALISSYEKLGRNDSAIRLFDEMKDNCMQPTEKIYTTLLGIYFKVGKV 284
Query: 460 DEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDL 519
++A + + M+ +G + LIKG AG +++A D ++ M+ +G + ++
Sbjct: 285 EKALDLFEEMKRAGCSPTVYTYTELIKGLGKAGRVEEAYDLYKNML-TDGLTPDVVFLNN 343
Query: 520 LVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRG-FKDALSLLCLMKD 578
L+N R ++ V N + + P +Y +IK L + + S MK
Sbjct: 344 LMNILGKVGR-LEELTNVFNEMGTWRCTPTVVSYNTVIKALFESKAPVSEVSSWFDKMKA 402
Query: 579 HGFPP---FVDPFIKYVSKSGTSDDAIAFLKGMTSKRFPSMSVVLC-LFAAFFQARRHSE 634
G P I K+ + A+ L+ M K FP C L A +A+R+
Sbjct: 403 DGVSPSEFTYSILIDGYCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINALGKAKRYEA 462
Query: 635 AQDLL 639
A +L
Sbjct: 463 ANELF 467
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 64/283 (22%), Positives = 120/283 (42%), Gaps = 15/283 (5%)
Query: 305 NAMASVLGREDCIDRFWKVLDEM---RSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEF 361
N + ++LG+ ++ V +EM R + T +K L F + V E ++
Sbjct: 342 NNLMNILGKVGRLEELTNVFNEMGTWRCTPTVVSYNTVIKAL--FESKAPVSEVSSWFDK 399
Query: 362 AMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISV 421
A PS + L+ + +++ L ++ E G A S++ AL
Sbjct: 400 MKADGVSPSEFTYSILIDGYCKTNRVEKALL--LLEEMDEKGFPPCPAAYCSLINALGKA 457
Query: 422 GRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMW 481
R N++ K ++E SS + + + GK EA + + M+ GS +
Sbjct: 458 KRYEAANELFKELKENFGNVSSRVYAVMIKHFGKCGKLSEAVDLFNEMKNQGSGPDVYAY 517
Query: 482 VSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKN---RAIDACKFVH 538
+L+ G AG +++A +KM E+ G + + ++++N + RAI+ + +
Sbjct: 518 NALMSGMVKAGMVNEANSLLRKM-EENGCTADINSHNIILNGFARTGVPRRAIEMFETMK 576
Query: 539 NCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGF 581
+C +KP TY L+ F++A L+ MKD GF
Sbjct: 577 HC----GIKPDGVTYNTLLGCFAHAGMFEEAARLMREMKDKGF 615
>gi|255582603|ref|XP_002532083.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223528243|gb|EEF30297.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 841
Score = 78.6 bits (192), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 104/494 (21%), Positives = 201/494 (40%), Gaps = 53/494 (10%)
Query: 209 FEKEGLESDLEKLKGIFATGSIDNSIEKVAS--RICKVVRSDIWGDDVERQLRDLNVTFS 266
+ +G+ S L G + VA+ +I ++V+ WG ++E QL L S
Sbjct: 122 YSGKGIRSVEPGLDDHVMVGGLKKPFLNVAAVAKIVEIVKRWKWGPELETQLDKLQFVPS 181
Query: 267 NDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDE 326
V + K+ ++ L F+WA+ + D+ Y + L + D + DE
Sbjct: 182 MTHVVQAL-KIINDADGMLSLFKWAKRQTWYVVDDECYALLFDGLNKIRDFDGIQSLFDE 240
Query: 327 M--------------------------------------RSKGYEMEMETCVKVLGRFSE 348
M + G +++ +T ++ F
Sbjct: 241 MVQDSSKGGISSVYAYNRVIQHLAKAEKLELSFCCFKKVQDSGCKIDTQTYNALITSFLN 300
Query: 349 RNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTD 408
+ + +A ++YE A + + ++ + S +LD+ K+ + +E +
Sbjct: 301 KGLPYKAFEIYESMQAAQCSLDASTYELMIPSLAKSGRLDVAF--KLFQEMKERKIRPSF 358
Query: 409 AMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDH 468
+ +S++ ++ GR+ KI M+ G +S++M + + AGK D A D
Sbjct: 359 GIFSSLVDSMGKSGRLDTSMKIYMEMQGFGLRSSASMYVSLIESYTKAGKLDTALRLWDE 418
Query: 469 MEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKN 528
M+ +G ++ +I+ H +G LD A F+ M +K G L+ + +
Sbjct: 419 MKKAGFRPNYGLYTLIIESHAKSGKLDIATSIFKDM-DKAGFLPTPSTYSCLLEMHAASG 477
Query: 529 RAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFV--- 585
+ +D+ ++N + LKP +TY L+ L ++ A +L MK GF V
Sbjct: 478 Q-VDSAMKLYNSMTNAGLKPGLSTYTALLTLLASKKLVDVAAKILLEMKAMGFSVDVSAS 536
Query: 586 DPFIKYVSKSGTSDDAIAFLKGMTSKRFPSMSVVL-CLFAAFFQARRHSEAQDLLSKCPR 644
D + Y+ K G+ D A+ +L M S + + ++ LF + + + A+ LL
Sbjct: 537 DVLMVYI-KDGSVDLALRWLSFMGSSGIRTNNFIIRQLFESCMKKGLYESAKPLLET--- 592
Query: 645 YVRNHADVLNLLYS 658
YV + A V +LY+
Sbjct: 593 YVNSAAKVDLILYT 606
>gi|356534139|ref|XP_003535615.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g60050-like [Glycine max]
Length = 480
Score = 78.6 bits (192), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 92/402 (22%), Positives = 162/402 (40%), Gaps = 22/402 (5%)
Query: 222 KGIFATGSIDNSIEKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDE- 280
KG T +D A R+ +V+R D G D L +L+V S LV+ V+ +
Sbjct: 74 KGFLETVKLD------AKRVLEVLRQDGPGLDARLVLGELHVRLSGLLVREVLFGILKHI 127
Query: 281 --------PKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGY 332
K A FF W + +H ++Y+ + ++ + W+++DEM KG
Sbjct: 128 NCENKTRCAKLAYKFFVWCSQQEGYQHTVNAYHLVMNIYAECEEFKALWRLVDEMVEKGL 187
Query: 333 EMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLF 392
T ++ E + K V+ + + +P + +L ++V Q +L
Sbjct: 188 PATARTFNILIRTCGEAGLAKSLVERFIKSKTFNFRPFKHSYNAILHGLLVLNQ--YKLI 245
Query: 393 SKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFR 452
V + +G N V+ A +G++ + +++L M GF + + +
Sbjct: 246 EWVYQQLLLDGFSSDILTYNIVMYAKYRLGKLDQFHRLLDEMGRNGFSPDFHTFNILLHV 305
Query: 453 LSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSH 512
L K A ++HM G + + +LI G AG+LD F +M+ K G
Sbjct: 306 LGKGDKPLAALNLLNHMREMGIEPTVLHFTTLIDGLSRAGNLDACKYFFDEMI-KNGCIP 364
Query: 513 AGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSL 572
A +++ Y A K + + P TY +I+ L + F +A S+
Sbjct: 365 DVVAYTVMITGYVVAGEIEKALKMYQYMISREQV-PNVFTYNSIIQGLCMAGKFDEACSM 423
Query: 573 LCLMKDHGFPP--FV-DPFIKYVSKSGTSDDAIAFLKGMTSK 611
L MK G P FV + + +G + DA ++ MT K
Sbjct: 424 LKEMKTKGCSPNSFVYNTLASCLRNAGKTADAHEVIRQMTEK 465
>gi|225447826|ref|XP_002268129.1| PREDICTED: pentatricopeptide repeat-containing protein At3g62470,
mitochondrial-like [Vitis vinifera]
Length = 679
Score = 78.6 bits (192), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 100/426 (23%), Positives = 170/426 (39%), Gaps = 41/426 (9%)
Query: 239 SRICKVVRSDIWGD-DVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFV 297
SR+C+V+ D ++E L + NV S+ LV V+++ K A FF WA +
Sbjct: 206 SRVCRVIDELFALDRNMEAVLDECNVDLSHALVVGVLERFKHARKPAFRFFCWAGQKAGF 265
Query: 298 KHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVD 357
H+ +YNAM SVLGR + +L EM KG + MET + F+ K+AV
Sbjct: 266 THNSRTYNAMMSVLGRTRQFESMMGMLGEMGEKGL-LTMETFSIAIKAFAAAKERKKAVG 324
Query: 358 LYEFAMACKNKPSVNCCTFLLRKIVVSK--QLDMRLFSKVVRVFRENGNVLTDAMLN--- 412
++E V+ LL + +K + LF K+ F N T +LN
Sbjct: 325 VFELMKRYNFDAGVDTINCLLDNLGRAKLGKEAQALFEKLEDRFTPNLRTYT-VLLNGWC 383
Query: 413 ----------------------------SVLKALISVGRMGECNKILKAMEEGGFIASSN 444
++L+ L+ + + K+ + M+ G +
Sbjct: 384 RIKNLVEAGRTWNEMIDKGFKPDIIAHHTMLEGLLKCKKKSDAIKLFEVMKAKGPSPNVR 443
Query: 445 MKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKM 504
+ + L K EA E+ D M SG ++ LI G +DK ++M
Sbjct: 444 TYTILIRDLCKQMKMQEAVEYFDEMVDSGCQPDAAVYTCLITGFGNQKKMDKVYALLKEM 503
Query: 505 VEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQR 564
EK G G + L+ ++ DA + ++ H TY ++K+ R
Sbjct: 504 KEK-GCPADGRTYNALIKLMTNRQMPDDAVRIYKKMIQNGIQSTLH-TYNMMMKSYFYTR 561
Query: 565 GFKDALSLLCLMKDHGFPPFVDPFIKYVS---KSGTSDDAIAFLKGMTSKRFPSMSVVLC 621
++ ++ M G P + +I ++ + G S++A +L+ M K + +
Sbjct: 562 NYEMGCAVWEEMGRKGCCPDDNSYIVFIGGLIRHGRSEEACRYLEEMIEKGMKAPQLDYN 621
Query: 622 LFAAFF 627
FAA F
Sbjct: 622 KFAADF 627
Score = 46.2 bits (108), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 78/397 (19%), Positives = 166/397 (41%), Gaps = 21/397 (5%)
Query: 121 LELSGVVFTHEMVLKVLKNLESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLV 180
L+ V +H +V+ VL+ + + A RFF W +K +S+TYN M+ ++G
Sbjct: 226 LDECNVDLSHALVVGVLERFKHARKPAFRFFCWAGQKAGFTHNSRTYNAMMSVLGRTRQF 285
Query: 181 QEFWGLVDVMKKKGYGVASHVRNKMTEKFEKEGLESDLEKLKGIFATG---SIDNSIEKV 237
+ G++ M +KG + + + +K G+F + D ++ +
Sbjct: 286 ESMMGMLGEMGEKGL----LTMETFSIAIKAFAAAKERKKAVGVFELMKRYNFDAGVDTI 341
Query: 238 ASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALI--FFRWAE--E 293
+ + R+ + G + + L F+ +L + V G K L+ W E +
Sbjct: 342 NCLLDNLGRAKL-GKEAQALFEKLEDRFTPNLRTYTVLLNGWCRIKNLVEAGRTWNEMID 400
Query: 294 SGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVK 353
GF K D +++ M L + K+ + M++KG + T ++ ++ ++
Sbjct: 401 KGF-KPDIIAHHTMLEGLLKCKKKSDAIKLFEVMKAKGPSPNVRTYTILIRDLCKQMKMQ 459
Query: 354 EAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNS 413
EAV+ ++ + +P T L+ K++D ++++ +++ +E G N+
Sbjct: 460 EAVEYFDEMVDSGCQPDAAVYTCLITGFGNQKKMD-KVYA-LLKEMKEKGCPADGRTYNA 517
Query: 414 VLKALISVGRMGECNKILKAMEEGGF---IASSNMKSKIAFRLSSAGKKDEANEFMDHME 470
++K + + + +I K M + G + + NM K F + + + M
Sbjct: 518 LIKLMTNRQMPDDAVRIYKKMIQNGIQSTLHTYNMMMKSYFYTRNY---EMGCAVWEEMG 574
Query: 471 ASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEK 507
G D ++ I G G ++A ++M+EK
Sbjct: 575 RKGCCPDDNSYIVFIGGLIRHGRSEEACRYLEEMIEK 611
>gi|115488482|ref|NP_001066728.1| Os12g0456100 [Oryza sativa Japonica Group]
gi|77555567|gb|ABA98363.1| hypothetical protein LOC_Os12g27060 [Oryza sativa Japonica Group]
gi|113649235|dbj|BAF29747.1| Os12g0456100 [Oryza sativa Japonica Group]
gi|125579252|gb|EAZ20398.1| hypothetical protein OsJ_36005 [Oryza sativa Japonica Group]
Length = 1117
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 93/423 (21%), Positives = 186/423 (43%), Gaps = 23/423 (5%)
Query: 227 TGSIDNSIEKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALI 286
G ++N I +V R+ +V+R+++ G VE++L +L VT++ LV V+++ +
Sbjct: 169 AGDVEN-ISEVVHRVTEVLRAEVPGLSVEQRLENLGVTYTPRLVSLVLNRCFKKRHLGFK 227
Query: 287 FFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRF 346
FF W + +H +YNAM + G E K++DEM + +++T V+ +
Sbjct: 228 FFDWVRQVPGFQHTTETYNAMLYIAGEERNFGAMEKLMDEMDKEMCLKDIKTWTIVISSY 287
Query: 347 SERNMVKEAVDLYEFAMACKNKPSVNCCTF--LLRKIVVSKQLDMRL-FSKVVRVFRENG 403
+ + + + ++ AM + + + +L + S + ++ L F K + E G
Sbjct: 288 GKARQIGKMLSTFQ-AMGKSRHVAADSKVYRTILHALCNSAKSELALEFYKDMARNTEVG 346
Query: 404 NVLTDAMLNSVLKALISVGRMGECNKILKAM---EEGGFIASSNMKSKIAFRLSSAGKKD 460
+ + +L + + + G + ++K+M EE ++ + ++S +GK +
Sbjct: 347 SDIFRLLLCCLAGSDNAEGVFYVRDDMIKSMKYPEEYCYLEA--LRS-----FCVSGKIE 399
Query: 461 EANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLL 520
EA + M + S + L++G C G +DKA + M S A + L
Sbjct: 400 EAQKIFQQM-MNKSIASSSAFEILLRGLCKDGRMDKALQVMEYMKSNSSASSATFGS--L 456
Query: 521 VNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHG 580
++ Y K + A + + +REY P ++Y +L+++L + A L M+++G
Sbjct: 457 IDGYLRKGERMKALEVLQE-MREYGCVPLASSYTQLMQHLFAFDQHEAACRLYEEMQENG 515
Query: 581 FPPFVDPFIK----YVSKSGTSDDAIAFLKGMTSKRFPSMSVVLCLFAAFFQARRHSEAQ 636
P V +V S+ AF + + P++ +A R EA
Sbjct: 516 IEPDVVAITALIGGHVRNGHISEAWDAFRNINENGQKPTLKAYTVFIQELCKASRPLEAL 575
Query: 637 DLL 639
LL
Sbjct: 576 KLL 578
Score = 63.5 bits (153), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 93/471 (19%), Positives = 196/471 (41%), Gaps = 51/471 (10%)
Query: 100 DFTVVSDIFYKFSDVN-------DISKQLELSGVVFTHEMVLKVLKNLESSPDEARRFFN 152
D +S++ ++ ++V + ++LE GV +T +V VL +FF+
Sbjct: 171 DVENISEVVHRVTEVLRAEVPGLSVEQRLENLGVTYTPRLVSLVLNRCFKKRHLGFKFFD 230
Query: 153 WVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRNKMTEKFEKE 212
WV + + +++TYN ML I G +++ +G K+ ++ +KE
Sbjct: 231 WVRQVPGFQHTTETYNAMLYIAG---------------EERNFGAM----EKLMDEMDKE 271
Query: 213 GLESDLEKLKGIFATGSIDNSIEKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKF 272
D++ + ++ I K+ S + +S +V + + +
Sbjct: 272 MCLKDIKTWTIVISSYGKARQIGKMLSTFQAMGKSR-------------HVAADSKVYRT 318
Query: 273 VVDKLGDEPKK--ALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSK 330
++ L + K AL F++ + V D + + L D + + V D+M K
Sbjct: 319 ILHALCNSAKSELALEFYKDMARNTEVGSD--IFRLLLCCLAGSDNAEGVFYVRDDM-IK 375
Query: 331 GYEMEMETC-VKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDM 389
+ E C ++ L F ++EA +++ M K+ S + LLR + ++D
Sbjct: 376 SMKYPEEYCYLEALRSFCVSGKIEEAQKIFQ-QMMNKSIASSSAFEILLRGLCKDGRMDK 434
Query: 390 RLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKI 449
L +V+ + N + + A S++ + G + ++L+ M E G + ++ +++
Sbjct: 435 AL--QVMEYMKSNSSA-SSATFGSLIDGYLRKGERMKALEVLQEMREYGCVPLASSYTQL 491
Query: 450 AFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEG 509
L + + + A + M+ +G + +LI GH G + +A D F+ + E G
Sbjct: 492 MQHLFAFDQHEAACRLYEEMQENGIEPDVVAITALIGGHVRNGHISEAWDAFRNINEN-G 550
Query: 510 TSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNL 560
A + + C +R ++A K + + E D +P T+ +I L
Sbjct: 551 QKPTLKAYTVFIQELCKASRPLEALKLLKEML-ESDFRPSEQTFSRIISTL 600
Score = 47.8 bits (112), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 75/381 (19%), Positives = 152/381 (39%), Gaps = 24/381 (6%)
Query: 240 RICKVVRS-DIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVK 298
+IC+++ S D W +E+ L +++F+ DLV ++ + + AL FF W + +
Sbjct: 695 QICRILSSSDCW-SSIEQALEMTSISFTPDLVDAIMKRCKANSRAALQFFSWVGKRSYYM 753
Query: 299 HDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDL 358
+YN + G + EM ++T ++ ++ + + A++
Sbjct: 754 QTTKTYNTAIKLAGSAKDFKHMRHLYREMIWAECCPTVDTWNVMICQYGNAGLTEMALET 813
Query: 359 YEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRE---NGNVLTDAMLNSVL 415
+ +P + L+ + K R V++F E G + + M+ + L
Sbjct: 814 FYQMKQGGFQPDKTTYSHLIMYLSRRKG---RKVDAAVKIFHEMCRAGYIPDNGMVCTYL 870
Query: 416 KALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSD 475
L G + + + + GF + S + L + + EA D+++ G
Sbjct: 871 SVLCECGMIDRAESSVVLLCKHGFSIQAGY-SILIRSLCRSDRMAEALSLFDNIKNYGCS 929
Query: 476 VGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKE--GTSHAGYAIDLLVNTYCSK---NRA 530
M+ SLI H + D+ D K+ E + G + + + + Y K ++A
Sbjct: 930 RSAYMYGSLI--HALL-RRDRFEDASAKLAEMKNLGIAQSTHMYTSFMIYYLGKRDVSKA 986
Query: 531 IDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPFIK 590
+D K + E +P TY LI+ + +A + MK G P + +
Sbjct: 987 MDVLKE----MTENGCEPTVVTYSALIRGHMAMGMVSEAWDVFQRMKLKGPVPDFETYSM 1042
Query: 591 YVS---KSGTSDDAIAFLKGM 608
++S K+G S+D + + M
Sbjct: 1043 FMSCLCKAGRSEDGLQLIHDM 1063
Score = 42.0 bits (97), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 44/85 (51%)
Query: 91 EPAMEQKESDFTVVSDIFYKFSDVNDISKQLELSGVVFTHEMVLKVLKNLESSPDEARRF 150
E A + D + I + I + LE++ + FT ++V ++K +++ A +F
Sbjct: 683 EQAKDYNNEDVEQICRILSSSDCWSSIEQALEMTSISFTPDLVDAIMKRCKANSRAALQF 742
Query: 151 FNWVLEKESERLSSKTYNLMLRIVG 175
F+WV ++ ++KTYN +++ G
Sbjct: 743 FSWVGKRSYYMQTTKTYNTAIKLAG 767
>gi|225439358|ref|XP_002269283.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g06400, mitochondrial-like [Vitis vinifera]
Length = 1048
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 82/370 (22%), Positives = 155/370 (41%), Gaps = 11/370 (2%)
Query: 217 DLEKLKGIFATGSIDNSIEKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDK 276
DL L+ + S N + + I K+VR+DI +E +L F +++V+ V+ +
Sbjct: 121 DLSVLEDTQTSHSGGNDVSPMVDEITKIVRADIGTGSMEEKLEKSGFVFDSEVVEKVLKR 180
Query: 277 LGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEM 336
P AL FF W + H +YN M + G K++ EM KG + ++
Sbjct: 181 CFKVPHLALRFFNWVKFRNGGCHTTRTYNTMLYIAGEAKEFGLVEKLIGEMEEKGCKRDI 240
Query: 337 ETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVV 396
+T ++ + + ++ +A+ + E +P V L+R + +++ D+ L
Sbjct: 241 KTWTILISHYGKAKLIGKALLILEKMWKSGCEPDVAAYMILIRSLCNAQKADIALEFYKE 300
Query: 397 RVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSA 456
V +E G L ++ +L L G + + M I ++ S + A
Sbjct: 301 MVQKEMG--LDMSLYELLLTCLAGSGDIAGVQLVADDMIRRSQIPERDVFSCMLKSFCIA 358
Query: 457 GKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYA 516
G+ EA E + + + + +L+KG C A + AA+ M +++ Y
Sbjct: 359 GRIREALELIRDLNDKNLTLEPNDFETLVKGLCRADRITDAAEIVDIMKKRKVVDAKVYG 418
Query: 517 IDLLVNTYCSKN---RAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLL 573
I +++ Y +N +A D V + E P +TY EL+++L ++ L
Sbjct: 419 I--IISGYLRRNDIPKAFD----VLQTMTESGYLPTISTYTELMQHLFRLNEYQKGCKLY 472
Query: 574 CLMKDHGFPP 583
M + G P
Sbjct: 473 DEMLERGVEP 482
Score = 72.0 bits (175), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 123/534 (23%), Positives = 214/534 (40%), Gaps = 37/534 (6%)
Query: 122 ELSGVVFTHEMVLKVLKNLESSP----DEARRFFNWV---LEKESERLSSKTYNLMLRIV 174
EL + T E V+KVL +++S DE FNWV LEK+ E K M R
Sbjct: 528 ELCKISRTDE-VIKVLNEMQASKIIIGDEV---FNWVISYLEKKGETEMVKKVMQMQRTC 583
Query: 175 GVHGLVQEFWGLVDVMKKKGYGVASHVRNKMTEKFEKEGLESDLEKLKGIFATGSIDNSI 234
+ E G + V K++ + + F LES L + N
Sbjct: 584 KFYPQEHEASGSI-VPKRQLHNL----------DFNFNQLESGRMDLHLVEHLPKTYN-- 630
Query: 235 EKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEES 294
E+ IC+++ + + +E L V F++ LV ++ AL+FF W +
Sbjct: 631 EQDLQEICRILSTSMDWCLIEEALEKCTVQFTSQLVVEILRSCSLHGHAALLFFSWVGKR 690
Query: 295 GFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKE 354
H +YN + G + EMR KG+ + +T ++ ++ + +
Sbjct: 691 DGYSHTTETYNMGIKISGCSKNFRSMRNLFFEMRRKGHPVTPDTWTIMIMQYGRAGLTEI 750
Query: 355 AVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRE---NGNVLTDAML 411
A+ + A KP+ + +L+ + K R + ++ F E G V ++
Sbjct: 751 ALRNFAEMKANDCKPNGSTYKYLIICLCGRKG---RKVDEAIKTFLEMIRAGYVPDKELV 807
Query: 412 NSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEA 471
S LK L VG++ + + +A+ + GF + I L AG+ +EA +D +
Sbjct: 808 ESYLKCLCEVGKLLDARRCTEALCKLGFTIPLSYSLYIR-ALCRAGRLEEALALVDEVGP 866
Query: 472 SGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAI 531
+ ++ SL+ G G L +A + M K+ H + + + K + +
Sbjct: 867 ERVTLDQYIYGSLVHGLLRRGRLKEALEKVDSM--KQIGIHPTVHVYTSLIVHFFKEKQM 924
Query: 532 DACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHG-FPPF--VDPF 588
++E +P TY LI+ + F DA ++ L++ G FP F F
Sbjct: 925 RKALETFQKMKEEGCEPTIVTYSALIRGHMAMGNFVDARNVFGLLQLKGPFPDFKTYSMF 984
Query: 589 IKYVSKSGTSDDAIAFLKGMT-SKRFPSMSVVLCLFAAFFQARRHSEAQDLLSK 641
I + K G S++A+ L M S PS + + +HS A +L K
Sbjct: 985 ISCLCKVGKSEEALQLLSEMLDSGIIPSTINFRTVMFGLNREGKHSLANIVLQK 1038
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 107/468 (22%), Positives = 190/468 (40%), Gaps = 85/468 (18%)
Query: 85 ICSYSSEPAMEQKESDFTVVSDIFYKFSDVNDIS--------------------KQLELS 124
+C + + A E D +V+ D S ND+S ++LE S
Sbjct: 108 VCGIAEDNAREM--VDLSVLEDTQTSHSGGNDVSPMVDEITKIVRADIGTGSMEEKLEKS 165
Query: 125 GVVFTHEMVLKVLKNLESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVGVH---GLVQ 181
G VF E+V KVLK P A RFFNWV + +++TYN ML I G GLV+
Sbjct: 166 GFVFDSEVVEKVLKRCFKVPHLALRFFNWVKFRNGGCHTTRTYNTMLYIAGEAKEFGLVE 225
Query: 182 EFWGLVDVMKKKG--------------YGVASHVRNKM--TEKFEKEGLESDLEK----L 221
+ L+ M++KG YG A + + EK K G E D+ +
Sbjct: 226 K---LIGEMEEKGCKRDIKTWTILISHYGKAKLIGKALLILEKMWKSGCEPDVAAYMILI 282
Query: 222 KGIFATGSIDNSIEKVASRI----------------CKVVRSDIWG-----DDVER--QL 258
+ + D ++E + C DI G DD+ R Q+
Sbjct: 283 RSLCNAQKADIALEFYKEMVQKEMGLDMSLYELLLTCLAGSGDIAGVQLVADDMIRRSQI 342
Query: 259 RDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCID 318
+ +V FS L F + ++AL R + + + + + L R D I
Sbjct: 343 PERDV-FSCMLKSFCI---AGRIREALELIRDLNDKNLT-LEPNDFETLVKGLCRADRIT 397
Query: 319 RFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLL 378
+++D M+ + ++ + ++ + RN + +A D+ + P+++ T L+
Sbjct: 398 DAAEIVDIMKKRKV-VDAKVYGIIISGYLRRNDIPKAFDVLQTMTESGYLPTISTYTELM 456
Query: 379 RKI--VVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEE 436
+ + + Q +L+ +++ E +V AM+ ++ + E K+ +M+E
Sbjct: 457 QHLFRLNEYQKGCKLYDEMLERGVEPDSVAITAMVAGHVRQ----NHIFEAWKVFNSMQE 512
Query: 437 GGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKM--WV 482
G A+ S L + DE + ++ M+AS +GD++ WV
Sbjct: 513 RGIRATWKSYSVFIKELCKISRTDEVIKVLNEMQASKIIIGDEVFNWV 560
Score = 47.0 bits (110), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 79/384 (20%), Positives = 152/384 (39%), Gaps = 14/384 (3%)
Query: 98 ESDFTVVSDIFYKFSDVNDISKQLELSGVVFTHEMVLKVLKNLESSPDEARRFFNWVLEK 157
E D + I D I + LE V FT ++V+++L++ A FF+WV ++
Sbjct: 631 EQDLQEICRILSTSMDWCLIEEALEKCTVQFTSQLVVEILRSCSLHGHAALLFFSWVGKR 690
Query: 158 ESERLSSKTYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRNKMTEKFEKEGL-ES 216
+ +++TYN+ ++I G + L M++KG+ V M ++ + GL E
Sbjct: 691 DGYSHTTETYNMGIKISGCSKNFRSMRNLFFEMRRKGHPVTPDTWTIMIMQYGRAGLTEI 750
Query: 217 DLEKLKGIFATGSIDNSIEKVASRICKVVRSDIWGDDVERQLRDL---NVTFSNDLVKFV 273
L + A N IC R D+ + ++ +LV+
Sbjct: 751 ALRNFAEMKANDCKPNGSTYKYLIICLCGRKGRKVDEAIKTFLEMIRAGYVPDKELVESY 810
Query: 274 VDKLGDEPKKALIFFRWAEES----GFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRS 329
+ L + K L+ R E+ GF SY+ L R ++ ++DE+
Sbjct: 811 LKCLCEVGK--LLDARRCTEALCKLGFTI--PLSYSLYIRALCRAGRLEEALALVDEVGP 866
Query: 330 KGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDM 389
+ ++ ++ R +KEA++ + P+V+ T L+ KQ M
Sbjct: 867 ERVTLDQYIYGSLVHGLLRRGRLKEALEKVDSMKQIGIHPTVHVYTSLIVHFFKEKQ--M 924
Query: 390 RLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKI 449
R + + +E G T +++++ +++G + + ++ G S
Sbjct: 925 RKALETFQKMKEEGCEPTIVTYSALIRGHMAMGNFVDARNVFGLLQLKGPFPDFKTYSMF 984
Query: 450 AFRLSSAGKKDEANEFMDHMEASG 473
L GK +EA + + M SG
Sbjct: 985 ISCLCKVGKSEEALQLLSEMLDSG 1008
>gi|302808451|ref|XP_002985920.1| hypothetical protein SELMODRAFT_123132 [Selaginella moellendorffii]
gi|300146427|gb|EFJ13097.1| hypothetical protein SELMODRAFT_123132 [Selaginella moellendorffii]
Length = 574
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 85/397 (21%), Positives = 160/397 (40%), Gaps = 38/397 (9%)
Query: 235 EKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEES 294
++ +R+C ++ WGD+ R L LN + + V ++ K E A FF WA +
Sbjct: 2 HRLVARVCGILNQHGWGDETVRALAGLNASLNAYQVNEIL-KQQKEAGVAYNFFIWARKQ 60
Query: 295 GFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKE 354
KHD +Y + +LGR D +LDEM +G E + T +++ + N +
Sbjct: 61 AGFKHDVHTYTTILGILGRAKSFDVLNNLLDEMIREGCEPNVVTYNRLIHCYGRANDLDS 120
Query: 355 AVDLYEFAMACKNKPS-VNCCTF---------------LLRKIVVSK-QLDMRLFSKVVR 397
++ L+ +P V CT L R++ + + D +S ++
Sbjct: 121 SLKLFNVMQMVGCEPDRVTYCTLIDLQAKAGFHDAAMELYRQMQHAGFRPDTFTYSIIIH 180
Query: 398 VFRENGNV---------LTD-------AMLNSVLKALISVGRMGECNKILKAMEEGGFIA 441
+ G + +TD N ++ G+ K+ ++E G+
Sbjct: 181 CLGKAGKLNAAYKLFCEMTDRGYAPSLVTYNIIIDLHAKAGKFDMALKLYSDLQEVGYAP 240
Query: 442 SSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCF 501
I L + G ++A + + ME +G + ++ ++ G+ +KAA F
Sbjct: 241 DRVTYGIIMEVLGNCGHIEDAEQVFEEMERAGWVADNPIFGLMVDMWGKTGNAEKAAQWF 300
Query: 502 QKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLL 561
+M++ G A + L++ Y ++ DA V + ++ L P TY L+ +
Sbjct: 301 NRMLD-SGLQPNVPACNSLLSAYL-RSSFYDAAGGVLGGMAKWGLYPTLQTYTSLLSSCA 358
Query: 562 VQRGFKDALSLLCLMKDHGFPPFVDPFIKYVSKSGTS 598
R + +L LM G P PF+ + SG +
Sbjct: 359 ACRAAWEYDALFGLMGGTGHP--AHPFVCSLLASGGT 393
>gi|449464322|ref|XP_004149878.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g37230-like [Cucumis sativus]
Length = 760
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 107/500 (21%), Positives = 198/500 (39%), Gaps = 93/500 (18%)
Query: 218 LEKLKGIFATGSIDNSIEKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKL 277
++++KG G + EK+ ICK++ + W ++ +R L F ++LV + V
Sbjct: 73 VQQVKGRIPRGRPRDP-EKLEKIICKMMANREWTTRLQNSIRSLVPQFDHNLV-YNVLHA 130
Query: 278 GDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEME 337
+ + AL FFRW E +G +HD ++ + +LGR ++ +L +M +KG + + +
Sbjct: 131 AKKSEHALNFFRWVERAGLFQHDRETHFKIIEILGRASKLNHARCILLDMPNKGVQWDED 190
Query: 338 TCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKI------VVSKQLDMRL 391
V ++ + + +V+EAV +++ + SV L ++I +++K+ +
Sbjct: 191 LFVVLIESYGKAGIVQEAVKIFQKMKELGVERSVKSYDALFKEIMRRGRYMMAKRYFNAM 250
Query: 392 FSKVVRVFRENGNVL-----------------TDAMLNSVLKALISVGRM--GECNKILK 432
++ + R NV+ D + +++ M G C K
Sbjct: 251 LNEGIEPIRHTYNVMLWGFFLSLRLETAKRFYEDMKSRGISPDVVTYNTMINGYCR--FK 308
Query: 433 AMEE---------GGFIASSNMKSKIAFR-LSSAGKKDEANEFMDHMEASGSDVGDKMWV 482
MEE G IA + + + S + D+A + M+A+G D +
Sbjct: 309 MMEEAEQFFTEMKGKNIAPTVISYTTMIKGYVSVSRADDALRLFEEMKAAGEKPNDITYS 368
Query: 483 SLIKGHCVA------------------------------------GDLDKAADCFQKMVE 506
+L+ G C A GDLD A + M+
Sbjct: 369 TLLPGLCDAEKLPEARKILTEMVTRHFAPKDNSIFMRLLSCQCKHGDLDAAMHVLKAMIR 428
Query: 507 KEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCV-REYDLKPWHT-TYEELIKNLLVQR 564
+ AG+ +L+ C A K + N V +E L+P T E NL++Q
Sbjct: 429 LSIPTEAGH-YGILIENCCKAGMYDQAVKLLENLVEKEIILRPQSTLEMEASAYNLIIQ- 486
Query: 565 GFKDALSLLCLMKDHGFPPFVDPFIKYVSKSGTSDDAIAF---LKGMTSKRFPSMSVVLC 621
LC +HG D F + + K G D+ +AF ++G + P ++ +
Sbjct: 487 -------YLC---NHGQTGKADTFFRQLLKKGIQDE-VAFNNLIRGHAKEGNPDLAFEML 535
Query: 622 LFAAFFQARRHSEAQDLLSK 641
R +E+ LL K
Sbjct: 536 KIMGRRGVSRDAESYKLLIK 555
Score = 48.9 bits (115), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 71/316 (22%), Positives = 127/316 (40%), Gaps = 38/316 (12%)
Query: 313 REDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKN-KPSV 371
R + RF+ ++M+S+G ++ T ++ + M++EA + M KN P+V
Sbjct: 274 RLETAKRFY---EDMKSRGISPDVVTYNTMINGYCRFKMMEEAEQFFT-EMKGKNIAPTV 329
Query: 372 NCCTFLLRKIVVSKQLD--MRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNK 429
T +++ V + D +RLF ++ + G D +++L L ++ E K
Sbjct: 330 ISYTTMIKGYVSVSRADDALRLFEEM----KAAGEKPNDITYSTLLPGLCDAEKLPEARK 385
Query: 430 ILKAMEEGGFIASSNMKSKIAFRLSSA----GKKDEANEFMDHMEASGSDVGDKMWVSLI 485
IL M F N I RL S G D A + M + LI
Sbjct: 386 ILTEMVTRHFAPKDN---SIFMRLLSCQCKHGDLDAAMHVLKAMIRLSIPTEAGHYGILI 442
Query: 486 KGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYD 545
+ C AG D+A + +VEKE +++ + Y N + +Y
Sbjct: 443 ENCCKAGMYDQAVKLLENLVEKEIILRPQSTLEMEASAY--------------NLIIQYL 488
Query: 546 LKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDH---GFPPFVDPFIKYVSKSGTSDDAI 602
T + L+++G +D ++ L++ H G P +K + + G S DA
Sbjct: 489 CNHGQTGKADTFFRQLLKKGIQDEVAFNNLIRGHAKEGNPDLAFEMLKIMGRRGVSRDAE 548
Query: 603 AF---LKGMTSKRFPS 615
++ +K SK P+
Sbjct: 549 SYKLLIKSYLSKGEPA 564
>gi|224144668|ref|XP_002325369.1| predicted protein [Populus trichocarpa]
gi|222862244|gb|EEE99750.1| predicted protein [Populus trichocarpa]
Length = 422
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 84/381 (22%), Positives = 158/381 (41%), Gaps = 26/381 (6%)
Query: 241 ICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHD 300
I ++R +++ ER L LN+ +++LV V+ + P ++L FF WA +
Sbjct: 17 ITNIIRKEVYP---ERTLNKLNLPITSELVFRVLRACSNSPSESLRFFNWARS--YYSPT 71
Query: 301 ESSYNAMASVLGREDCIDRFWKVLDEMRSK---GYEMEMETCVKVLGRFSERNMVKEAVD 357
Y + L R WK++ +++ + + +T ++ + + ++ +AV+
Sbjct: 72 TIEYEELIITLVRNKKYASMWKLIAQVKDNLGDKFSVSSDTVCSIIEEYGKHGLIDQAVE 131
Query: 358 LYEFAMACKNKPSVNC----CTF--LLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAML 411
++ K S+NC C + LL + K ++ V R+ R+ G V
Sbjct: 132 VFN-----KCSRSLNCQHNVCVYNSLLFALCEVKMFH-GAYALVRRMIRK-GIVPDKRTY 184
Query: 412 NSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEA 471
++ S G++ E L+ M + GF + + L +AG + A + + M
Sbjct: 185 GVLVNGWCSSGKLREAKGFLEEMSKKGFNPPVRGRDLLIEGLLNAGYLESAKDMVRRMMK 244
Query: 472 SGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAI 531
G + S+++ C AG++D D + V K G + +L+ R
Sbjct: 245 EGLVPDVNTFNSMVEAICNAGEVDFCVDMYHS-VCKLGFCPDINSYKILIPAVSKVGRID 303
Query: 532 DACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFP---PFVDPF 588
+A + +HN + E KP+ + Y +IK + + F DA MK G P P
Sbjct: 304 EAFRLLHNLI-EDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKVKGHPPNRPVYTMM 362
Query: 589 IKYVSKSGTSDDAIAFLKGMT 609
I + G +A +L MT
Sbjct: 363 ITMCGRGGKHVEAANYLVEMT 383
>gi|449507993|ref|XP_004163187.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At2g37230-like [Cucumis sativus]
Length = 760
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 107/500 (21%), Positives = 198/500 (39%), Gaps = 93/500 (18%)
Query: 218 LEKLKGIFATGSIDNSIEKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKL 277
++++KG G + EK+ ICK++ + W ++ +R L F ++LV + V
Sbjct: 73 VQQVKGRIPRGRPRDP-EKLEXIICKMMANREWTTRLQNSIRSLVPQFDHNLV-YNVLHA 130
Query: 278 GDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEME 337
+ + AL FFRW E +G +HD ++ + +LGR ++ +L +M +KG + + +
Sbjct: 131 AKKSEHALNFFRWVERAGLFQHDRETHFKIIEILGRASKLNHARCILLDMPNKGVQWDED 190
Query: 338 TCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKI------VVSKQLDMRL 391
V ++ + + +V+EAV +++ + SV L ++I +++K+ +
Sbjct: 191 LFVVLIESYGKAGIVQEAVKIFQKMKELGVERSVKSYDALFKEIMRRGRYMMAKRYFNAM 250
Query: 392 FSKVVRVFRENGNVL-----------------TDAMLNSVLKALISVGRM--GECNKILK 432
++ + R NV+ D + +++ M G C K
Sbjct: 251 LNEGIEPIRHTYNVMLWGFFLSLRLETAKRFYEDMKSRGISPDVVTYNTMINGYCR--FK 308
Query: 433 AMEE---------GGFIASSNMKSKIAFR-LSSAGKKDEANEFMDHMEASGSDVGDKMWV 482
MEE G IA + + + S + D+A + M+A+G D +
Sbjct: 309 MMEEAEQFFTEMKGKNIAPTVISYTTMIKGYVSVSRADDALRLFEEMKAAGEKPNDITYS 368
Query: 483 SLIKGHCVA------------------------------------GDLDKAADCFQKMVE 506
+L+ G C A GDLD A + M+
Sbjct: 369 TLLPGLCDAEKLPEARKILTEMVTRHFAPKDNSIFMRLLSCQCKHGDLDAAMHVLKAMIR 428
Query: 507 KEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCV-REYDLKPWHT-TYEELIKNLLVQR 564
+ AG+ +L+ C A K + N V +E L+P T E NL++Q
Sbjct: 429 LSIPTEAGH-YGILIENCCKAGMYDQAVKLLENLVEKEIILRPQSTLEMEASAYNLIIQ- 486
Query: 565 GFKDALSLLCLMKDHGFPPFVDPFIKYVSKSGTSDDAIAF---LKGMTSKRFPSMSVVLC 621
LC +HG D F + + K G D+ +AF ++G + P ++ +
Sbjct: 487 -------YLC---NHGQTGKADTFFRQLLKKGIQDE-VAFNNLIRGHAKEGNPDLAFEML 535
Query: 622 LFAAFFQARRHSEAQDLLSK 641
R +E+ LL K
Sbjct: 536 KIMGRRGVSRDAESYKLLIK 555
Score = 48.9 bits (115), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 71/316 (22%), Positives = 127/316 (40%), Gaps = 38/316 (12%)
Query: 313 REDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKN-KPSV 371
R + RF+ ++M+S+G ++ T ++ + M++EA + M KN P+V
Sbjct: 274 RLETAKRFY---EDMKSRGISPDVVTYNTMINGYCRFKMMEEAEQFFT-EMKGKNIAPTV 329
Query: 372 NCCTFLLRKIVVSKQLD--MRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNK 429
T +++ V + D +RLF ++ + G D +++L L ++ E K
Sbjct: 330 ISYTTMIKGYVSVSRADDALRLFEEM----KAAGEKPNDITYSTLLPGLCDAEKLPEARK 385
Query: 430 ILKAMEEGGFIASSNMKSKIAFRLSSA----GKKDEANEFMDHMEASGSDVGDKMWVSLI 485
IL M F N I RL S G D A + M + LI
Sbjct: 386 ILTEMVTRHFAPKDN---SIFMRLLSCQCKHGDLDAAMHVLKAMIRLSIPTEAGHYGILI 442
Query: 486 KGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYD 545
+ C AG D+A + +VEKE +++ + Y N + +Y
Sbjct: 443 ENCCKAGMYDQAVKLLENLVEKEIILRPQSTLEMEASAY--------------NLIIQYL 488
Query: 546 LKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDH---GFPPFVDPFIKYVSKSGTSDDAI 602
T + L+++G +D ++ L++ H G P +K + + G S DA
Sbjct: 489 CNHGQTGKADTFFRQLLKKGIQDEVAFNNLIRGHAKEGNPDLAFEMLKIMGRRGVSRDAE 548
Query: 603 AF---LKGMTSKRFPS 615
++ +K SK P+
Sbjct: 549 SYKLLIKSYLSKGEPA 564
>gi|302806226|ref|XP_002984863.1| hypothetical protein SELMODRAFT_121207 [Selaginella moellendorffii]
gi|300147449|gb|EFJ14113.1| hypothetical protein SELMODRAFT_121207 [Selaginella moellendorffii]
Length = 564
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 85/398 (21%), Positives = 163/398 (40%), Gaps = 44/398 (11%)
Query: 235 EKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALI---FFRWA 291
++ +R+C ++ WGD+ R L LN +L + V+++ + K+A + FF WA
Sbjct: 2 HRLVARVCGILNQHGWGDETVRALAGLNA----NLNAYQVNEILKQQKEAGVAYNFFIWA 57
Query: 292 EESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNM 351
+ KHD +Y + +LGR D +LDEM +G E + T +++ + N
Sbjct: 58 RKQAGFKHDVHTYTTILGILGRAKSFDVLNNLLDEMIREGCEPNVVTYNRLIHCYGRAND 117
Query: 352 VKEAVDLYEFAMACKNKPS-VNCCTF---------------LLRKIVVSK-QLDMRLFSK 394
+ ++ L+ +P V CT L R++ + + D +S
Sbjct: 118 LDSSLKLFNVMQMVGCEPDRVTYCTLIDLQAKAGFHDAAMDLYRQMQHAGFRPDTFTYSI 177
Query: 395 VVRVFRENGNV---------LTD-------AMLNSVLKALISVGRMGECNKILKAMEEGG 438
++ + G + +TD N ++ G+ K+ ++E G
Sbjct: 178 IIHCLGKAGKLNAAYKLFCEMTDRGYAPSLVTYNIIIDLHAKAGKFDMALKLYSDLQEVG 237
Query: 439 FIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAA 498
+ I L + G ++A + + ME +G + ++ ++ G+ +KAA
Sbjct: 238 YAPDRVTYGIIMEVLGNCGHIEDAEQVFEEMERAGWVADNPIFGLMVDMWGKTGNAEKAA 297
Query: 499 DCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIK 558
F +M++ G A + L++ Y ++ DA V + ++ L P TY L+
Sbjct: 298 QWFNRMLDS-GLQPNVPACNSLLSAYL-RSSFYDAAGGVLGGMAKWGLYPTLQTYTSLLS 355
Query: 559 NLLVQRGFKDALSLLCLMKDHGFPPFVDPFIKYVSKSG 596
+ R + +L LM G P PF+ + SG
Sbjct: 356 SCAACRAAWEYDALFGLMGGTGHP--AHPFVCSLLASG 391
>gi|297841875|ref|XP_002888819.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297334660|gb|EFH65078.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 512
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 101/426 (23%), Positives = 169/426 (39%), Gaps = 26/426 (6%)
Query: 223 GIFATGSID-----NSIEKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKL 277
G F S++ N + + A +ICK++ S VE L + +V S L++ V+ KL
Sbjct: 48 GSFHASSVETQVSANDVSQDADKICKIL-SKFTDSKVETLLNEASVKLSPALIEEVLKKL 106
Query: 278 GDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEME 337
+ AL F+WAE KH S+YNA+ LG+ W ++D+M+ K + +
Sbjct: 107 SNAGVLALSVFKWAENQKGFKHTTSNYNALIESLGKIKQFKLIWNLVDDMKQKKL-LSKD 165
Query: 338 TCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVV- 396
T + R++ VKEA+ + + F + ++ LD+ S+ V
Sbjct: 166 TFALISRRYARARKVKEAITAFH---------KMEDYGFKMESSDFNRMLDILSKSRNVG 216
Query: 397 ---RVFRENGNVLTDAMLNSVLKALISVGR---MGECNKILKAMEEGGFIASSNMKSKIA 450
+VF + + + S L G+ + N++ M++ GF I
Sbjct: 217 DAQKVFDKMKKKRFEPDIKSYTILLEGWGQELNLLRVNEVYGEMKDEGFEPDVVAYGIII 276
Query: 451 FRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGT 510
A K DEA F + ME ++ SLI G L+ A + F++ + G
Sbjct: 277 NAYCKAKKYDEAVRFFNEMEQRNCKPSPHIFCSLINGLGSEKKLNDALEFFER-SKSSGF 335
Query: 511 SHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDAL 570
+ LV YC R DA K V +R + P TY+ ++ +L+ + K+A
Sbjct: 336 PLEAPTYNALVGAYCWSQRMEDAFKTVDE-MRSKGIGPNARTYDIILHHLIRMQRTKEAY 394
Query: 571 SLLCLMKDHGFPPFVDPFIKYVSKSGTSDDAIAFLKGMTSKR-FPSMSVVLCLFAAFFQA 629
+ M + ++ D AI M K P M + L A
Sbjct: 395 EVYQKMSCEPTVSTYEIMVRMFCNKERLDMAIKIWDEMKGKGVLPGMHMFSSLITALCHE 454
Query: 630 RRHSEA 635
+ EA
Sbjct: 455 NKLDEA 460
Score = 63.2 bits (152), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 95/446 (21%), Positives = 177/446 (39%), Gaps = 84/446 (18%)
Query: 100 DFTVVSDIFYKFSDVNDISKQLELSGVVFTHEMVLKVLKNLESSPDEARRFFNWVLEKES 159
D + I KF+D + + L + V + ++ +VLK L ++ A F W ++
Sbjct: 67 DADKICKILSKFTD-SKVETLLNEASVKLSPALIEEVLKKLSNAGVLALSVFKWAENQKG 125
Query: 160 ERLSSKTYNLMLRIVGVHGLVQEFWGLVDVMKKKG-------------YGVASHVRNKMT 206
+ ++ YN ++ +G + W LVD MK+K Y A V+ +T
Sbjct: 126 FKHTTSNYNALIESLGKIKQFKLIWNLVDDMKQKKLLSKDTFALISRRYARARKVKEAIT 185
Query: 207 --EKFEKEGLE---SDLEKLKGIFATGSIDNSIEKVASRICK----------VVRSDIWG 251
K E G + SD ++ I + +KV ++ K + + WG
Sbjct: 186 AFHKMEDYGFKMESSDFNRMLDILSKSRNVGDAQKVFDKMKKKRFEPDIKSYTILLEGWG 245
Query: 252 --------DDVERQLRDLNVTFSNDLVKF------------------------------- 272
++V +++D F D+V +
Sbjct: 246 QELNLLRVNEVYGEMKDEG--FEPDVVAYGIIINAYCKAKKYDEAVRFFNEMEQRNCKPS 303
Query: 273 ------VVDKLGDEPK--KALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVL 324
+++ LG E K AL FF ++ SGF + +YNA+ ++ +K +
Sbjct: 304 PHIFCSLINGLGSEKKLNDALEFFERSKSSGF-PLEAPTYNALVGAYCWSQRMEDAFKTV 362
Query: 325 DEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVS 384
DEMRSKG T +L KEA ++Y+ M+C +P+V+ ++R
Sbjct: 363 DEMRSKGIGPNARTYDIILHHLIRMQRTKEAYEVYQ-KMSC--EPTVSTYEIMVRMFCNK 419
Query: 385 KQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSN 444
++LDM + K+ + G + M +S++ AL ++ E + M + G +
Sbjct: 420 ERLDMAI--KIWDEMKGKGVLPGMHMFSSLITALCHENKLDEACEYFNEMLDVGIRPPGH 477
Query: 445 MKSKIAFRLSSAGKKDEANEFMDHME 470
+ S++ L G+KD+ + M+
Sbjct: 478 LFSRLKQTLLDEGRKDKVADLAVKMD 503
Score = 44.3 bits (103), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 48/212 (22%), Positives = 89/212 (41%), Gaps = 6/212 (2%)
Query: 434 MEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGD 493
ME+ GF S+ +++ LS + +A + D M+ + K + L++G +
Sbjct: 190 MEDYGFKMESSDFNRMLDILSKSRNVGDAQKVFDKMKKKRFEPDIKSYTILLEGWGQELN 249
Query: 494 LDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTY 553
L + + + +M + EG A +++N YC + +A +F N + + + KP +
Sbjct: 250 LLRVNEVYGEM-KDEGFEPDVVAYGIIINAYCKAKKYDEAVRFF-NEMEQRNCKPSPHIF 307
Query: 554 EELIKNLLVQRGFKDALSLLCLMKDHGFP---PFVDPFIKYVSKSGTSDDAIAFLKGMTS 610
LI L ++ DAL K GFP P + + S +DA + M S
Sbjct: 308 CSLINGLGSEKKLNDALEFFERSKSSGFPLEAPTYNALVGAYCWSQRMEDAFKTVDEMRS 367
Query: 611 KRF-PSMSVVLCLFAAFFQARRHSEAQDLLSK 641
K P+ + + +R EA ++ K
Sbjct: 368 KGIGPNARTYDIILHHLIRMQRTKEAYEVYQK 399
>gi|242061252|ref|XP_002451915.1| hypothetical protein SORBIDRAFT_04g009890 [Sorghum bicolor]
gi|241931746|gb|EES04891.1| hypothetical protein SORBIDRAFT_04g009890 [Sorghum bicolor]
Length = 571
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 102/436 (23%), Positives = 180/436 (41%), Gaps = 50/436 (11%)
Query: 232 NSIEKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDK-LGDEPKKALIFFRW 290
+S+ + R ++++ WG D E+ L L + + LV+ ++ +G K + FFRW
Sbjct: 55 HSVRVLDERFIRILKIFKWGPDAEKALEVLMLRVDHWLVREIMKTDIGVNVK--MQFFRW 112
Query: 291 AEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGY----EMEMETCVKVLGRF 346
A + +HD S+Y A+ L + WK++ EM E+ V++LG
Sbjct: 113 AAKRRNYEHDTSTYMALIHCLEVVEQYGEMWKMIQEMVRNPICVVTPTELSEVVRMLG-- 170
Query: 347 SERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRE---NG 403
MV +A+ ++ K +P+ ++ ++ Q + KV ++ E G
Sbjct: 171 -NAKMVSKAIAIFYQIKTRKCQPTAQAYNSMIIMLMHEGQ-----YEKVHELYNEMSTEG 224
Query: 404 NVLTDAMLNSVL-KALISVGRMGECNKILKAMEEGGFIASSNMKSKIA---FRLSSAGKK 459
+ D M S L A +GR ++L M++ G ++ + + + F+L+
Sbjct: 225 HCFPDTMTYSALISAFCKLGRRDSAIQLLNEMKDNGMQPTTKIYTMLVALFFKLNDVHGA 284
Query: 460 DEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDL 519
E M H + DV + LI+G AG +D+A F +M ++EG ++
Sbjct: 285 LSLFEEMRH-QYCRPDVFT--YTELIRGLGKAGRIDEAYHFFYEM-QREGCRPDTIVMNN 340
Query: 520 LVNTYCSKNRAIDACKFVHN-----CVREYDLKPWHTTYEELIKNLLVQRG-FKDALSLL 573
++N R DA K C+ P TY +IK L + + S
Sbjct: 341 MINFLGKAGRLDDAMKLFQEMGTLRCI------PSVVTYNTIIKALFESKSRASEVPSWF 394
Query: 574 CLMKDHGFPP-------FVDPFIKYVSKSGTSDDAIAFLKGMTSKRFPSMSVVLC-LFAA 625
MK+ G P +D F K+ + A+ L+ M K FP C L A
Sbjct: 395 ERMKESGISPSSFTYSILIDGF----CKTNRMEKAMMLLEEMDEKGFPPCPAAYCSLIDA 450
Query: 626 FFQARRHSEAQDLLSK 641
+A+R+ A +L +
Sbjct: 451 LGKAKRYDLACELFQE 466
Score = 46.6 bits (109), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 101/511 (19%), Positives = 193/511 (37%), Gaps = 75/511 (14%)
Query: 116 DISKQLELSGVVFTHEMVLKVLKNLESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVG 175
D K LE+ + H +V +++K + + +FF W ++ + + TY ++ +
Sbjct: 76 DAEKALEVLMLRVDHWLVREIMKT-DIGVNVKMQFFRWAAKRRNYEHDTSTYMALIHCLE 134
Query: 176 VHGLVQEFWGLVDVMKKKGYGVASHVRNKMTEKFEKEGLESDLEKLKGIFATGSIDNSIE 235
V E W ++ M + V + +++E G + K IF
Sbjct: 135 VVEQYGEMWKMIQEMVRNPICVVTP--TELSEVVRMLGNAKMVSKAIAIFY--------- 183
Query: 236 KVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESG 295
++ +R C+ N ++ ++ + G K ++ + E G
Sbjct: 184 QIKTRKCQP-----------------TAQAYNSMIIMLMHE-GQYEKVHELYNEMSTE-G 224
Query: 296 FVKHDESSYNAMASV---LGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMV 352
D +Y+A+ S LGR D ++L+EM+ G + + ++ F + N V
Sbjct: 225 HCFPDTMTYSALISAFCKLGRRDSA---IQLLNEMKDNGMQPTTKIYTMLVALFFKLNDV 281
Query: 353 KEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLD------------------------ 388
A+ L+E +P V T L+R + + ++D
Sbjct: 282 HGALSLFEEMRHQYCRPDVFTYTELIRGLGKAGRIDEAYHFFYEMQREGCRPDTIVMNNM 341
Query: 389 MRLFSKVVRV------FRENGN---VLTDAMLNSVLKALI-SVGRMGECNKILKAMEEGG 438
+ K R+ F+E G + + N+++KAL S R E + M+E G
Sbjct: 342 INFLGKAGRLDDAMKLFQEMGTLRCIPSVVTYNTIIKALFESKSRASEVPSWFERMKESG 401
Query: 439 FIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAA 498
SS S + + ++A ++ M+ G + SLI A D A
Sbjct: 402 ISPSSFTYSILIDGFCKTNRMEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDLAC 461
Query: 499 DCFQKMVEKEGTSHAG-YAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELI 557
+ FQ++ E G+S + YA+ ++ R DA + + P Y L+
Sbjct: 462 ELFQELKENCGSSSSRVYAV--MIKHLGKAGRLDDAINMFDE-MNKLGCAPDVYAYNALM 518
Query: 558 KNLLVQRGFKDALSLLCLMKDHGFPPFVDPF 588
L +ALS + M++HG P ++ +
Sbjct: 519 SGLARTGMLDEALSTMRRMQEHGCIPDINSY 549
>gi|15223927|ref|NP_177262.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75169669|sp|Q9C9A2.1|PP112_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g71060, mitochondrial; Flags: Precursor
gi|12323433|gb|AAG51696.1|AC016972_15 hypothetical protein; 31939-30407 [Arabidopsis thaliana]
gi|332197036|gb|AEE35157.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 510
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 101/423 (23%), Positives = 173/423 (40%), Gaps = 16/423 (3%)
Query: 221 LKGIFATGSID-----NSIEKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVD 275
L G F S++ N + A RICK++ + VE L + +V S L++ V+
Sbjct: 44 LYGSFHASSVETQVSANDASQDAERICKIL-TKFTDSKVETLLNEASVKLSPALIEEVLK 102
Query: 276 KLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEME 335
KL + AL F+WAE KH S+YNA+ LG+ W ++D+M++K +
Sbjct: 103 KLSNAGVLALSVFKWAENQKGFKHTTSNYNALIESLGKIKQFKLIWSLVDDMKAKKL-LS 161
Query: 336 METCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLD--MRLFS 393
ET + R++ VKEA+ + K + +L + S+ + ++F
Sbjct: 162 KETFALISRRYARARKVKEAIGAFHKMEEFGFKMESSDFNRMLDTLSKSRNVGDAQKVFD 221
Query: 394 KVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRL 453
K+ + R ++ + +L +++ R+ E N + M++ GF I
Sbjct: 222 KMKKK-RFEPDIKSYTILLEGWGQELNLLRVDEVN---REMKDEGFEPDVVAYGIIINAH 277
Query: 454 SSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHA 513
A K +EA F + ME ++ SLI G L+ A + F++ + G
Sbjct: 278 CKAKKYEEAIRFFNEMEQRNCKPSPHIFCSLINGLGSEKKLNDALEFFER-SKSSGFPLE 336
Query: 514 GYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLL 573
+ LV YC R DA K V +R + P TY+ ++ +L+ + K+A +
Sbjct: 337 APTYNALVGAYCWSQRMEDAYKTVDE-MRLKGVGPNARTYDIILHHLIRMQRSKEAYEVY 395
Query: 574 CLMKDHGFPPFVDPFIKYVSKSGTSDDAIAFLKGMTSKR-FPSMSVVLCLFAAFFQARRH 632
M + ++ D AI M K P M + L A +
Sbjct: 396 QTMSCEPTVSTYEIMVRMFCNKERLDMAIKIWDEMKGKGVLPGMHMFSSLITALCHENKL 455
Query: 633 SEA 635
EA
Sbjct: 456 DEA 458
Score = 63.9 bits (154), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 96/459 (20%), Positives = 180/459 (39%), Gaps = 84/459 (18%)
Query: 87 SYSSEPAMEQKESDFTVVSDIFYKFSDVNDISKQLELSGVVFTHEMVLKVLKNLESSPDE 146
S ++ + D + I KF+D + + L + V + ++ +VLK L ++
Sbjct: 52 SVETQVSANDASQDAERICKILTKFTD-SKVETLLNEASVKLSPALIEEVLKKLSNAGVL 110
Query: 147 ARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLVDVMKKKG------------ 194
A F W ++ + ++ YN ++ +G + W LVD MK K
Sbjct: 111 ALSVFKWAENQKGFKHTTSNYNALIESLGKIKQFKLIWSLVDDMKAKKLLSKETFALISR 170
Query: 195 -YGVASHVRNKMT--EKFEKEGLE---SDLEKLKGIFATGSIDNSIEKVASRICK----- 243
Y A V+ + K E+ G + SD ++ + +KV ++ K
Sbjct: 171 RYARARKVKEAIGAFHKMEEFGFKMESSDFNRMLDTLSKSRNVGDAQKVFDKMKKKRFEP 230
Query: 244 -----VVRSDIWG--------DDVERQLRDLNVTFSNDLVKF------------------ 272
+ + WG D+V R+++D F D+V +
Sbjct: 231 DIKSYTILLEGWGQELNLLRVDEVNREMKDEG--FEPDVVAYGIIINAHCKAKKYEEAIR 288
Query: 273 -------------------VVDKLGDEPK--KALIFFRWAEESGFVKHDESSYNAMASVL 311
+++ LG E K AL FF ++ SGF + +YNA+
Sbjct: 289 FFNEMEQRNCKPSPHIFCSLINGLGSEKKLNDALEFFERSKSSGF-PLEAPTYNALVGAY 347
Query: 312 GREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSV 371
++ +K +DEMR KG T +L KEA ++Y+ M+C +P+V
Sbjct: 348 CWSQRMEDAYKTVDEMRLKGVGPNARTYDIILHHLIRMQRSKEAYEVYQ-TMSC--EPTV 404
Query: 372 NCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKIL 431
+ ++R ++LDM + K+ + G + M +S++ AL ++ E +
Sbjct: 405 STYEIMVRMFCNKERLDMAI--KIWDEMKGKGVLPGMHMFSSLITALCHENKLDEACEYF 462
Query: 432 KAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHME 470
M + G +M S++ L G+KD+ + + M+
Sbjct: 463 NEMLDVGIRPPGHMFSRLKQTLLDEGRKDKVTDLVVKMD 501
>gi|125532572|gb|EAY79137.1| hypothetical protein OsI_34244 [Oryza sativa Indica Group]
Length = 508
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 90/386 (23%), Positives = 158/386 (40%), Gaps = 16/386 (4%)
Query: 238 ASRICKVVRSDIWGDDVERQLRDLNVTFSNDLV-----KFVVDKLGDE----PKKALIFF 288
A RI K++ D G + + L ++ SN LV KFVV G P+ A FF
Sbjct: 111 ADRIVKILLQDGPGFNTRQALDEMRPRVSNALVREVLLKFVVSIDGVNRARYPRLAYKFF 170
Query: 289 RWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSE 348
WAE+ +H S YN + + + W++L++M KG + T ++
Sbjct: 171 LWAEDQEGYRHGTSMYNLILKIFAECGELKAMWRLLEDMTDKGLPVSSRTFHLLVCTSGR 230
Query: 349 RNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTD 408
+ + V+ + + +P N +L ++ +Q L V + G+
Sbjct: 231 AGLRRRLVERFIKSSNFNYRPFRNSFNAILHTLLTIEQYS--LIEWVHQKMIAEGHSPDV 288
Query: 409 AMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDH 468
N V++A +G++ + +K+L M + G + + L K A +++
Sbjct: 289 LTYNVVMRAKYMLGKLNQFHKLLDEMGKNGLAPDLYTYNLLLHVLGKGDKPLAALNLLNY 348
Query: 469 MEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKN 528
M G + +LI G AG+L+ F +MV K+G +++ Y +
Sbjct: 349 MSDVGCVPTVLHFTNLIDGLSRAGNLEACKYFFDEMV-KKGCQPDVVCYTVMITGYVAAG 407
Query: 529 RAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPF 588
+A KF + + L P TY +I L + F A SLL M+ G P +
Sbjct: 408 EFDEAQKFFDDMLLRGQL-PNVYTYNSMICGLCIVGEFDKACSLLKDMESRGCTPNFTVY 466
Query: 589 IKYVSK---SGTSDDAIAFLKGMTSK 611
VS+ +G +A ++ MT+K
Sbjct: 467 STLVSRLRNAGKDSEANNIIQYMTNK 492
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 84/357 (23%), Positives = 138/357 (38%), Gaps = 43/357 (12%)
Query: 139 NLESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVA 198
N P A +FF W ++E R + YNL+L+I G ++ W L++ M KG V+
Sbjct: 158 NRARYPRLAYKFFLWAEDQEGYRHGTSMYNLILKIFAECGELKAMWRLLEDMTDKGLPVS 217
Query: 199 SHVRNKMTEKFEKEGLESDL-EKL--KGIFATGSIDNSIEKVASRICKV--------VRS 247
S + + + GL L E+ F NS + + + V
Sbjct: 218 SRTFHLLVCTSGRAGLRRRLVERFIKSSNFNYRPFRNSFNAILHTLLTIEQYSLIEWVHQ 277
Query: 248 DIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESG--FVKHDESSYN 305
+ + + NV K+++ KL F + +E G + D +YN
Sbjct: 278 KMIAEGHSPDVLTYNVVMR---AKYMLGKLNQ-------FHKLLDEMGKNGLAPDLYTYN 327
Query: 306 AMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSE------RNMVKEAVDLY 359
+ VLG+ D +L+ M G CV + F+ R EA +
Sbjct: 328 LLLHVLGKGDKPLAALNLLNYMSDVG-------CVPTVLHFTNLIDGLSRAGNLEACKYF 380
Query: 360 EFAMACKN-KPSVNCCTFLLRKIVVSKQLD--MRLFSKVVRVFRENGNVLTDAMLNSVLK 416
M K +P V C T ++ V + + D + F ++ G + NS++
Sbjct: 381 FDEMVKKGCQPDVVCYTVMITGYVAAGEFDEAQKFFDDMLL----RGQLPNVYTYNSMIC 436
Query: 417 ALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASG 473
L VG + +LK ME G + + S + RL +AGK EAN + +M G
Sbjct: 437 GLCIVGEFDKACSLLKDMESRGCTPNFTVYSTLVSRLRNAGKDSEANNIIQYMTNKG 493
>gi|297807861|ref|XP_002871814.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297317651|gb|EFH48073.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 459
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 92/398 (23%), Positives = 150/398 (37%), Gaps = 62/398 (15%)
Query: 239 SRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVK 298
+ + +VR +I ER L L + +++ V V+ +L FF WA +
Sbjct: 52 NHVVNIVRREI---HPERSLNSLRLPVTSEFVFRVLRATSRSANDSLRFFNWARSNPSYT 108
Query: 299 HDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDL 358
Y +A L + WK+L +M+ ++ ET ++ ++ + V +AV+L
Sbjct: 109 PTSMEYEELAKSLASHKKYESMWKILKQMKDLSLDISGETLCFIIEQYGKNGHVDQAVEL 168
Query: 359 YEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKAL 418
+ P C + V V+ N++L AL
Sbjct: 169 F------NGVPKTLGC------------------QQTVDVY------------NALLHAL 192
Query: 419 ISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGD 478
V +++ M G + + SAGK EA EF+D M G +
Sbjct: 193 CDVKMFHGAYALIRRMIRKGLKPDKRTYAILVNGWCSAGKMKEAQEFLDEMSRKGFNPPA 252
Query: 479 KMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVH 538
+ LI+G AG L+ A + KM + G+ D+L T+ + AI V
Sbjct: 253 RGRDLLIEGLLNAGYLESAKEIVDKMTK------GGFVPDIL--TFNTLIEAISKSGEVE 304
Query: 539 NCVREY------DLKPWHTTYEELIKNLLVQRGFKDALSLL--CLMKDH-GFPPFVDPFI 589
C+ Y L TY+ LI + +A LL C+ H FP P I
Sbjct: 305 FCIEMYYTACKLGLCVDIDTYKTLIPAVSKIGKIDEAFRLLNNCVEDGHKPFPSLYAPII 364
Query: 590 KYVSKSGTSDDAIAFLKGMTSKRFP------SMSVVLC 621
K + ++G DDA +F M K P +M + +C
Sbjct: 365 KGMCRNGMFDDAFSFFSDMKVKAHPPNRPVYTMLITMC 402
Score = 41.2 bits (95), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 24/108 (22%), Positives = 48/108 (44%), Gaps = 1/108 (0%)
Query: 129 THEMVLKVLKNLESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLVD 188
T E V +VL+ S +++ RFFNW S +S Y + + + H + W ++
Sbjct: 76 TSEFVFRVLRATSRSANDSLRFFNWARSNPSYTPTSMEYEELAKSLASHKKYESMWKILK 135
Query: 189 VMKKKGYGVASHVRNKMTEKFEKEG-LESDLEKLKGIFATGSIDNSIE 235
MK ++ + E++ K G ++ +E G+ T +++
Sbjct: 136 QMKDLSLDISGETLCFIIEQYGKNGHVDQAVELFNGVPKTLGCQQTVD 183
>gi|125536538|gb|EAY83026.1| hypothetical protein OsI_38244 [Oryza sativa Indica Group]
Length = 1117
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 93/423 (21%), Positives = 187/423 (44%), Gaps = 23/423 (5%)
Query: 227 TGSIDNSIEKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALI 286
G ++N I +V R+ +V+R+++ G VE++L +L VT++ LV V+++ +
Sbjct: 169 AGDVEN-ISEVVHRVTEVLRAEVPGLSVEQRLENLGVTYTPRLVSLVLNRCFKKRHLGFK 227
Query: 287 FFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRF 346
FF W + ++ +YNAM + G E K++DEM + +++T V+ +
Sbjct: 228 FFDWVRQVPGFQNTTETYNAMLYIAGEERNFGAMEKLMDEMDKEMCLKDIKTWTIVISSY 287
Query: 347 SERNMVKEAVDLYEFAMACKNKPSVNCCTF--LLRKIVVSKQLDMRL-FSKVVRVFRENG 403
+ + + + ++ AM + + + +LR + S + ++ L F K + E G
Sbjct: 288 GKARQIGKMLSTFQ-AMGKSRHVAADSKVYRTILRALCNSAKSELALEFYKDMARNTEVG 346
Query: 404 NVLTDAMLNSVLKALISVGRMGECNKILKAM---EEGGFIASSNMKSKIAFRLSSAGKKD 460
+ + +L + + + G + ++K+M EE ++ + ++S +GK +
Sbjct: 347 SDIFRLLLCCLAGSDNAEGVFYVRDDMIKSMKYPEEYCYLEA--LRS-----FCVSGKIE 399
Query: 461 EANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLL 520
EA + M + S + L++G C G +DKA + M S A + L
Sbjct: 400 EAQKIFQQM-MNKSIASSSAFEILLRGLCKDGRMDKALQVMEYMKSNSSASSATFGS--L 456
Query: 521 VNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHG 580
++ Y K + A + + +REY P ++Y +L+++L + A L M+++G
Sbjct: 457 IDGYLRKGERMKALEVLQE-MREYGCVPLASSYTQLMQHLFAFDQHEAACRLYEEMQENG 515
Query: 581 FPPFVDPFIK----YVSKSGTSDDAIAFLKGMTSKRFPSMSVVLCLFAAFFQARRHSEAQ 636
P V +V S+ AF + + P++ +A R EA
Sbjct: 516 IEPDVVAITALIGGHVRNGHISEAWDAFRNINENGQKPTLKAYTVFIQELCKASRPLEAL 575
Query: 637 DLL 639
LL
Sbjct: 576 KLL 578
Score = 62.8 bits (151), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 93/471 (19%), Positives = 196/471 (41%), Gaps = 51/471 (10%)
Query: 100 DFTVVSDIFYKFSDVN-------DISKQLELSGVVFTHEMVLKVLKNLESSPDEARRFFN 152
D +S++ ++ ++V + ++LE GV +T +V VL +FF+
Sbjct: 171 DVENISEVVHRVTEVLRAEVPGLSVEQRLENLGVTYTPRLVSLVLNRCFKKRHLGFKFFD 230
Query: 153 WVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRNKMTEKFEKE 212
WV + + +++TYN ML I G +++ +G K+ ++ +KE
Sbjct: 231 WVRQVPGFQNTTETYNAMLYIAG---------------EERNFGAM----EKLMDEMDKE 271
Query: 213 GLESDLEKLKGIFATGSIDNSIEKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKF 272
D++ + ++ I K+ S + +S +V + + +
Sbjct: 272 MCLKDIKTWTIVISSYGKARQIGKMLSTFQAMGKSR-------------HVAADSKVYRT 318
Query: 273 VVDKLGDEPKK--ALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSK 330
++ L + K AL F++ + V D + + L D + + V D+M K
Sbjct: 319 ILRALCNSAKSELALEFYKDMARNTEVGSD--IFRLLLCCLAGSDNAEGVFYVRDDM-IK 375
Query: 331 GYEMEMETC-VKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDM 389
+ E C ++ L F ++EA +++ M K+ S + LLR + ++D
Sbjct: 376 SMKYPEEYCYLEALRSFCVSGKIEEAQKIFQ-QMMNKSIASSSAFEILLRGLCKDGRMDK 434
Query: 390 RLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKI 449
L +V+ + N + + A S++ + G + ++L+ M E G + ++ +++
Sbjct: 435 AL--QVMEYMKSNSSA-SSATFGSLIDGYLRKGERMKALEVLQEMREYGCVPLASSYTQL 491
Query: 450 AFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEG 509
L + + + A + M+ +G + +LI GH G + +A D F+ + E G
Sbjct: 492 MQHLFAFDQHEAACRLYEEMQENGIEPDVVAITALIGGHVRNGHISEAWDAFRNINEN-G 550
Query: 510 TSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNL 560
A + + C +R ++A K + + E D +P T+ +I L
Sbjct: 551 QKPTLKAYTVFIQELCKASRPLEALKLLKEML-ESDFRPSEQTFSRIISTL 600
Score = 49.7 bits (117), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 78/388 (20%), Positives = 151/388 (38%), Gaps = 38/388 (9%)
Query: 240 RICKVVRS-DIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVK 298
+IC+++ S D W +E+ L +++F+ DLV+ ++ + + AL FF W + +
Sbjct: 695 QICRILSSSDCW-SSIEQALEMTSISFTPDLVEAIMKRCKANSRAALQFFSWVGKRSYYM 753
Query: 299 HDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLG-------RFSERNM 351
+YN + G K MR EM C + ++ +
Sbjct: 754 QTTKTYNTAIKLAGSA-------KDFKHMRHLYREMIWAECCPTVNTWNVMICQYGNAGL 806
Query: 352 VKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRE---NGNVLTD 408
+ A++ + +P + L+ + K R V++F E G + +
Sbjct: 807 TEMALETFYQMKQGGFQPDKTTYSHLIMYLSRRKG---RKVDAAVKIFHEMCRAGYIPDN 863
Query: 409 AMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDH 468
M+ + L L G + + + + GF + S + L + + EA D+
Sbjct: 864 GMVRTYLSVLCECGMIDRAESSVVLLCKHGFSIQAGY-SILIRSLCRSDRMAEALSLFDN 922
Query: 469 MEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKE--GTSHAGYAIDLLVNTYCS 526
++ G M+ SLI V D+ D K+ E + G + + + + Y
Sbjct: 923 IKNYGCSRSAYMYGSLIH---VLLRRDRFEDASAKLAEMKNLGIAQSTHMYTSFMIYYLG 979
Query: 527 K---NRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPP 583
K ++A+D K + E +P TY LI+ + +A + MK G P
Sbjct: 980 KRDVSKAMDVLKE----MTENGCEPTVVTYSALIRGHMAMGMVSEAWDVFQRMKLKGPVP 1035
Query: 584 FVDPFIKYVS---KSGTSDDAIAFLKGM 608
+ + ++S K+G S+D + + M
Sbjct: 1036 DFETYSMFMSCLCKAGRSEDGLQLIHDM 1063
Score = 42.4 bits (98), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 44/85 (51%)
Query: 91 EPAMEQKESDFTVVSDIFYKFSDVNDISKQLELSGVVFTHEMVLKVLKNLESSPDEARRF 150
E A + D + I + I + LE++ + FT ++V ++K +++ A +F
Sbjct: 683 EQAKDYNNEDVEQICRILSSSDCWSSIEQALEMTSISFTPDLVEAIMKRCKANSRAALQF 742
Query: 151 FNWVLEKESERLSSKTYNLMLRIVG 175
F+WV ++ ++KTYN +++ G
Sbjct: 743 FSWVGKRSYYMQTTKTYNTAIKLAG 767
>gi|357441365|ref|XP_003590960.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355480008|gb|AES61211.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 590
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 73/308 (23%), Positives = 138/308 (44%), Gaps = 18/308 (5%)
Query: 282 KKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVK 341
+KA+ E+ G K D +YNA+ S + D +D KVLD M+ +G+E ++ T
Sbjct: 129 EKAIQVMEILEKHG--KPDVFAYNAVISGFCKADRVDHASKVLDRMKKRGFEPDVVTYNI 186
Query: 342 VLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLD--MRL----FSKV 395
++G F R + A+ + + + KP+V T L+ + +D M+L S+
Sbjct: 187 LIGNFCGRGRLDLALRVMDQLLKDNCKPTVITYTILIEATITQGGIDEAMKLLDEMLSRG 246
Query: 396 VRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSS 455
+R R NV+ + M G + + L + + G +A + + + L +
Sbjct: 247 LRPDRYTYNVVVNGMCKE--------GMLDRAFEFLSRISKNGCVAGVSTYNILLRDLLN 298
Query: 456 AGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGY 515
GK + + M M G + + +LI C G +D+A + + M EK + GY
Sbjct: 299 EGKWEYGEKLMSDMLVKGCEPNPITYSTLITALCRDGKIDEAKNVLKVMKEK-ALAPDGY 357
Query: 516 AIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCL 575
+ D L++ C + + A +F+ + + L P +Y ++ +L +AL++
Sbjct: 358 SYDPLISALCREGKVDLAIEFLDDMISGGHL-PDILSYNSILASLCKNGNADEALNIFEK 416
Query: 576 MKDHGFPP 583
+ + G PP
Sbjct: 417 LGEVGCPP 424
Score = 51.6 bits (122), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 69/344 (20%), Positives = 139/344 (40%), Gaps = 14/344 (4%)
Query: 324 LDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVV 383
L M ++GY+ ++ C K++ F +++A+ + E + KP V ++
Sbjct: 100 LQHMVNRGYKPDVILCTKLIKGFFNMKKIEKAIQVMEI-LEKHGKPDVFAYNAVISGFCK 158
Query: 384 SKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASS 443
+ ++D SKV+ ++ G N ++ GR+ +++ + + +
Sbjct: 159 ADRVDHA--SKVLDRMKKRGFEPDVVTYNILIGNFCGRGRLDLALRVMDQLLKDNCKPTV 216
Query: 444 NMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQK 503
+ + + G DEA + +D M + G + ++ G C G LD+A + F
Sbjct: 217 ITYTILIEATITQGGIDEAMKLLDEMLSRGLRPDRYTYNVVVNGMCKEGMLDRAFE-FLS 275
Query: 504 MVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQ 563
+ K G ++L+ ++ + K + + + + +P TY LI L
Sbjct: 276 RISKNGCVAGVSTYNILLRDLLNEGKWEYGEKLMSDMLVK-GCEPNPITYSTLITALCRD 334
Query: 564 RGFKDALSLLCLMKDHGFPP---FVDPFIKYVSKSGTSDDAIAFLKGMTS-KRFPSMSVV 619
+A ++L +MK+ P DP I + + G D AI FL M S P +
Sbjct: 335 GKIDEAKNVLKVMKEKALAPDGYSYDPLISALCREGKVDLAIEFLDDMISGGHLPDILSY 394
Query: 620 LCLFAAFFQARRHSEAQDLLSK-----CPRYVRNHADVLNLLYS 658
+ A+ + EA ++ K CP ++ + L+S
Sbjct: 395 NSILASLCKNGNADEALNIFEKLGEVGCPPNAGSYNTLFGALWS 438
Score = 46.6 bits (109), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 72/165 (43%), Gaps = 1/165 (0%)
Query: 412 NSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEA 471
NS+L +L G E I + + E G ++ + + L S+G K A + M +
Sbjct: 395 NSILASLCKNGNADEALNIFEKLGEVGCPPNAGSYNTLFGALWSSGDKIRALGMILEMLS 454
Query: 472 SGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAI 531
+G D + + SLI C G +D+A + M E E + + ++ C R I
Sbjct: 455 NGIDPDEITYNSLISCLCRDGLVDQAIELLVDMFESEKCQPTVISYNTVLLGLCKVQRII 514
Query: 532 DACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLM 576
DA + + V E L P TTY LI+ + DA+ L L+
Sbjct: 515 DAIEVLAAMVNEGCL-PNETTYTLLIQGIGFAGWRYDAMELANLL 558
>gi|224130706|ref|XP_002328356.1| predicted protein [Populus trichocarpa]
gi|222838071|gb|EEE76436.1| predicted protein [Populus trichocarpa]
Length = 613
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 87/384 (22%), Positives = 163/384 (42%), Gaps = 43/384 (11%)
Query: 297 VKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAV 356
V H+ S N + + L R + +D VL +M G + T ++ +KEAV
Sbjct: 124 VTHNVYSLNILINCLCRLNHVDFSVSVLGKMFKLGIHPDAITFNALINGLCNEGKIKEAV 183
Query: 357 DLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENG---NVLT------ 407
+L+ + ++P+V T ++ + + M + V + +NG NV+T
Sbjct: 184 ELFNEMVKRGHEPNVISYTTVINGLCKTGNTSMAV--DVFKKMEQNGCKPNVVTYSTIID 241
Query: 408 ---------DAM-----------------LNSVLKALISVGRMGECNKILKAMEEGGFIA 441
DAM NS++ ++G++ E ++ K M +
Sbjct: 242 SLCKDRLVNDAMEFLSEMVERGIPPNVFTYNSIVHGFCNLGQLNEATRLFKEMVGRDVMP 301
Query: 442 SSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCF 501
++ + + L G EA + M G + + +L+ G+C+ +++A F
Sbjct: 302 NTVTFTILVDGLCKEGMVSEARLVFETMTEKGVEPDISTYNALMDGYCLQRLMNEAKKVF 361
Query: 502 QKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLL 561
+ M+ K G + ++ ++L+N YC K+R +D K + + L P TY L++ L
Sbjct: 362 EIMIRK-GCAPGAHSYNILINGYC-KSRRMDEAKSLLAEMYHKALNPDTVTYSTLMQGLC 419
Query: 562 VQRGFKDALSLLCLMKDHGFPPFVDPFIKYVS---KSGTSDDAIAFLKGMTSKRF-PSMS 617
K+AL+L M +G P + ++ + K G D+A+ LK M K+ P++
Sbjct: 420 QLGRPKEALNLFKEMCSYGPHPNLVTYVILLDGFCKHGHLDEALKLLKSMKEKKLEPNIV 479
Query: 618 VVLCLFAAFFQARRHSEAQDLLSK 641
L F A + A++L SK
Sbjct: 480 HYTILIEGMFIAGKLEVAKELFSK 503
Score = 46.2 bits (108), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 93/468 (19%), Positives = 178/468 (38%), Gaps = 32/468 (6%)
Query: 174 VGVHGLVQEFWGLVDVMKKKG-YGVASHVRNKMTEKFEKEGLESDLEKLKGIFATGSIDN 232
+G+H F L++ + +G A + N+M ++ + + S + G+ TG+
Sbjct: 157 LGIHPDAITFNALINGLCNEGKIKEAVELFNEMVKRGHEPNVISYTTVINGLCKTGNTSM 216
Query: 233 SIEKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAE 292
++ D++ + + VT+S + D+L ++ A+ F
Sbjct: 217 AV-------------DVFKKMEQNGCKPNVVTYSTIIDSLCKDRLVND---AMEFLSEMV 260
Query: 293 ESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMV 352
E G + + +YN++ ++ ++ EM + T ++ + MV
Sbjct: 261 ERG-IPPNVFTYNSIVHGFCNLGQLNEATRLFKEMVGRDVMPNTVTFTILVDGLCKEGMV 319
Query: 353 KEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLN 412
EA ++E +P ++ L+ + + ++ KV + G N
Sbjct: 320 SEARLVFETMTEKGVEPDISTYNALMDGYCLQRLMNEA--KKVFEIMIRKGCAPGAHSYN 377
Query: 413 SVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEAS 472
++ RM E +L M + S + L G+ EA M +
Sbjct: 378 ILINGYCKSRRMDEAKSLLAEMYHKALNPDTVTYSTLMQGLCQLGRPKEALNLFKEMCSY 437
Query: 473 GSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAID 532
G +V L+ G C G LD+A + M EK+ + + L+ + + ++
Sbjct: 438 GPHPNLVTYVILLDGFCKHGHLDEALKLLKSMKEKKLEPNIVHYTILIEGMFIAG--KLE 495
Query: 533 ACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPP---FVDPFI 589
K + + + +P TY +IK LL + +A L M+D GF P + I
Sbjct: 496 VAKELFSKLFGDGTRPDIRTYTVMIKGLLKEGLSDEAYDLFRKMEDDGFLPNSCSYNVMI 555
Query: 590 KYVSKSGTSDDAIAFLKGMTSKRFPSMSVVLCLFAAFFQARRHSEAQD 637
+ ++ S AI + M KRF SV L + FQ E+QD
Sbjct: 556 QGFLQNQDSSTAIRLIDEMVGKRF---SVNL----STFQMLLDLESQD 596
Score = 44.3 bits (103), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 56/243 (23%), Positives = 92/243 (37%), Gaps = 9/243 (3%)
Query: 398 VFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAG 457
+FR NV + LN ++ L + + +L M + G + + + L + G
Sbjct: 121 LFRVTHNVYS---LNILINCLCRLNHVDFSVSVLGKMFKLGIHPDAITFNALINGLCNEG 177
Query: 458 KKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAI 517
K EA E + M G + + ++I G C G+ A D F+KM E+ G
Sbjct: 178 KIKEAVELFNEMVKRGHEPNVISYTTVINGLCKTGNTSMAVDVFKKM-EQNGCKPNVVTY 236
Query: 518 DLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMK 577
++++ C DA +F+ V E + P TY ++ +A L M
Sbjct: 237 STIIDSLCKDRLVNDAMEFLSEMV-ERGIPPNVFTYNSIVHGFCNLGQLNEATRLFKEMV 295
Query: 578 DHGFPPFVDPFIKYVS---KSGTSDDAIAFLKGMTSKRF-PSMSVVLCLFAAFFQARRHS 633
P F V K G +A + MT K P +S L + R +
Sbjct: 296 GRDVMPNTVTFTILVDGLCKEGMVSEARLVFETMTEKGVEPDISTYNALMDGYCLQRLMN 355
Query: 634 EAQ 636
EA+
Sbjct: 356 EAK 358
>gi|449454008|ref|XP_004144748.1| PREDICTED: pentatricopeptide repeat-containing protein At3g62470,
mitochondrial-like [Cucumis sativus]
gi|449490811|ref|XP_004158714.1| PREDICTED: pentatricopeptide repeat-containing protein At3g62470,
mitochondrial-like [Cucumis sativus]
Length = 621
Score = 77.4 bits (189), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 98/405 (24%), Positives = 155/405 (38%), Gaps = 58/405 (14%)
Query: 239 SRICKVVRSDIWGD-DVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFV 297
+R+CKV+ D ++E L + V S+DLV V+ + K A FF WA +
Sbjct: 146 NRVCKVIDELFALDRNMEAVLDECGVKLSHDLVLEVLARFKQARKPAFRFFCWAAQKPGF 205
Query: 298 KHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMET---CVKVLGRFSERNMVKE 354
HD +YN M ++LG+ + +L+EM K + MET C K ER K+
Sbjct: 206 AHDSKTYNTMMTILGKTRQFETMVSLLEEMAEKEL-LTMETFTVCFKAFAAAKER---KK 261
Query: 355 AVDLYEFAMACKNK---PSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAML 411
AV + E K K ++NC L + + K+ + +F K+ F N T
Sbjct: 262 AVGVLELMKKYKYKVGVETINCLLDSLGRAKLGKEA-LTIFEKLHGRFTPNLQTYT---- 316
Query: 412 NSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEA 471
+L V + E KI M + F + + L K+ +A + + M+A
Sbjct: 317 -VLLNGWCRVRNLMEAGKIWNQMIDEDFKPDIVAHNTMLEGLLRCKKRSDAIKLFEVMKA 375
Query: 472 SGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAI 531
G K + L++ C + +A F++M AG C + AI
Sbjct: 376 KGPSPDVKSYTILVRDFCKQAKMKEAVQYFEEM------QGAG----------CRPDAAI 419
Query: 532 DACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPP---FVDPF 588
C LI Q+ LL MK +G PP +
Sbjct: 420 YTC---------------------LITGFGNQKRMDTVYGLLKEMKANGCPPDGKTYNAL 458
Query: 589 IKYVSKSGTSDDAIAFLKGMTSKRF-PSMSVVLCLFAAFFQARRH 632
IK ++ DDA+ K M P+ + ++FQ R +
Sbjct: 459 IKLMTNKRMPDDAVRIYKKMIENGIKPTTHTYSMMMKSYFQTRNY 503
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 98/458 (21%), Positives = 179/458 (39%), Gaps = 85/458 (18%)
Query: 95 EQKESDFTVVSDIFYKFSDVNDISKQLEL----SGVVFTHEMVLKVLKNLESSPDEARRF 150
+ +E D T V+ + ++ + + +E GV +H++VL+VL + + A RF
Sbjct: 136 DNRECDSTEVNRVCKVIDELFALDRNMEAVLDECGVKLSHDLVLEVLARFKQARKPAFRF 195
Query: 151 FNWVLEKESERLSSKTYNLMLRIVG-------VHGLVQEFW------------------- 184
F W +K SKTYN M+ I+G + L++E
Sbjct: 196 FCWAAQKPGFAHDSKTYNTMMTILGKTRQFETMVSLLEEMAEKELLTMETFTVCFKAFAA 255
Query: 185 --------GLVDVMKKKGYGVASHVRNKMTE-----KFEKEGLESDLEKLKGIFATGSID 231
G++++MKK Y V N + + K KE L + EKL G F
Sbjct: 256 AKERKKAVGVLELMKKYKYKVGVETINCLLDSLGRAKLGKEAL-TIFEKLHGRFTPNLQT 314
Query: 232 NSIEKVASRICKVVR----SDIWGDDVERQLRD------------LNVTFSNDLVKF--V 273
++ + + C+V IW ++ + L +D +K V
Sbjct: 315 YTV--LLNGWCRVRNLMEAGKIWNQMIDEDFKPDIVAHNTMLEGLLRCKKRSDAIKLFEV 372
Query: 274 VDKLGDEP------------------KKALIFFRWAEESGFVKHDESSYNAMASVLGRED 315
+ G P K+A+ +F + +G + D + Y + + G +
Sbjct: 373 MKAKGPSPDVKSYTILVRDFCKQAKMKEAVQYFEEMQGAG-CRPDAAIYTCLITGFGNQK 431
Query: 316 CIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCT 375
+D + +L EM++ G + +T ++ + + M +AV +Y+ + KP+ + +
Sbjct: 432 RMDTVYGLLKEMKANGCPPDGKTYNALIKLMTNKRMPDDAVRIYKKMIENGIKPTTHTYS 491
Query: 376 FLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAME 435
+++ ++ +M + + G D + LIS+GR E K L+ M
Sbjct: 492 MMMKSYFQTRNYEMGV--AAWDEMKLKGCCPDDNSYTVFIGGLISLGRCAEAGKYLEEMI 549
Query: 436 EGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASG 473
E G A +K A S AG+ D E M+ SG
Sbjct: 550 EKGMKAPQLDYNKFAADFSRAGRPDILEELAQKMKFSG 587
Score = 40.8 bits (94), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 34/156 (21%), Positives = 67/156 (42%), Gaps = 10/156 (6%)
Query: 519 LLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKD 578
+L+N +C ++A K + + E D KP + +++ LL + DA+ L +MK
Sbjct: 317 VLLNGWCRVRNLMEAGKIWNQMIDE-DFKPDIVAHNTMLEGLLRCKKRSDAIKLFEVMKA 375
Query: 579 HGFPPFVDPF---IKYVSKSGTSDDAIAFLKGMTSKRF-PSMSVVLCLFAAFFQARRHSE 634
G P V + ++ K +A+ + + M P ++ CL F +R
Sbjct: 376 KGPSPDVKSYTILVRDFCKQAKMKEAVQYFEEMQGAGCRPDAAIYTCLITGFGNQKRMDT 435
Query: 635 AQDLLSK-----CPRYVRNHADVLNLLYSKKSGGDS 665
LL + CP + + ++ L+ +K+ D+
Sbjct: 436 VYGLLKEMKANGCPPDGKTYNALIKLMTNKRMPDDA 471
>gi|224136310|ref|XP_002326829.1| predicted protein [Populus trichocarpa]
gi|222835144|gb|EEE73579.1| predicted protein [Populus trichocarpa]
Length = 664
Score = 77.4 bits (189), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 95/410 (23%), Positives = 161/410 (39%), Gaps = 52/410 (12%)
Query: 241 ICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHD 300
+ +++ S W ++E L L+ + S F V + P KA FF WA +GF HD
Sbjct: 1 MARLINSKPWSTELESSLFSLSPSISKTTF-FQVLRFIASPPKAFEFFNWASRNGFA-HD 58
Query: 301 ESSYNAMASVLGREDCID--RFWKVLDEMRSKG-YEMEMETCVKVLGRFSERNMVKEAVD 357
SY M +LGR ++ R + E RS G ++E C +L + + EA+
Sbjct: 59 SRSYFMMLDILGRNGNLNIARNFLFSIERRSNGSVKIEDRFCNTLLRSYGNAGLFNEAIK 118
Query: 358 LYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMR------------------LFSKVVRVF 399
L+ + PSV LL ++ + +M F+ ++R F
Sbjct: 119 LFSLMKSSGVSPSVITFNSLLLILLKRGRTNMAHSVFDEMCGTYGVTPDTYTFNILIRGF 178
Query: 400 RENG---------------NVLTDAM-LNSVLKALISVGRMGECNKILKAMEEGGFIASS 443
+N N D + N+++ L G++ + ++K M + S
Sbjct: 179 CKNSMVDEGFRFFKEMSRFNCEPDVVTYNTLVDGLCRAGKVRIAHNVVKGMVKKMKDLSP 238
Query: 444 NMKSKIAFRLSSAGKK--DEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCF 501
++ + K+ DEA + M + G D + +LIKG C DK +
Sbjct: 239 DVVTYTTLVRGYCMKQEIDEALVVFEEMVSRGLKPNDITYNTLIKGLCEVQKFDKIKEIL 298
Query: 502 QKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLL 561
V G + L+N C +A K ++E ++P TY LI+NL
Sbjct: 299 GGAVGGRGFVPDTCTYNTLMNAQCDAGNFDEALKMFKK-MKELKVQPDSATYSVLIRNLC 357
Query: 562 VQRGFKDALSLL-------CLMKDHGFPPFV---DPFIKYVSKSGTSDDA 601
+ F+ A L L++D G P V +P ++ K+G + A
Sbjct: 358 QRGDFERAEQLFDKLSDEDILLRDDGCTPLVAAYNPIFDFLCKNGKTHKA 407
Score = 48.1 bits (113), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 91/476 (19%), Positives = 180/476 (37%), Gaps = 72/476 (15%)
Query: 142 SSPDEARRFFNWVLEKESERLSSKTYNLMLRIVGVHG---LVQEFWGLVDVMKKKGYGVA 198
+SP +A FFNW + S++Y +ML I+G +G + + F ++ +
Sbjct: 38 ASPPKAFEFFNWA-SRNGFAHDSRSYFMMLDILGRNGNLNIARNFLFSIERRSNGSVKIE 96
Query: 199 SHVRNKMTEKFEKEGLESDLEKLKGIFATGSIDNSIEKVASRICKVVRSDIWGDDVERQL 258
N + + GL ++ KL + + + S+
Sbjct: 97 DRFCNTLLRSYGNAGLFNEAIKLFSLMKSSGVSPSV------------------------ 132
Query: 259 RDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCID 318
+TF++ L+ ++ K G +F G V D ++N + + +D
Sbjct: 133 ----ITFNSLLL--ILLKRGRTNMAHSVFDEMCGTYG-VTPDTYTFNILIRGFCKNSMVD 185
Query: 319 ---RFWKVLDEMRSKGYEMEMETCVKVLGRFSE--------RNMVKEAVDLYEFAMACKN 367
RF+K + + + T V L R + + MVK+ DL
Sbjct: 186 EGFRFFKEMSRFNCEPDVVTYNTLVDGLCRAGKVRIAHNVVKGMVKKMKDL--------- 236
Query: 368 KPSVNCCTFLLRKIVVSKQLD--MRLFSKVV-RVFRENGNVLTDAMLNSVLKALISVGRM 424
P V T L+R + +++D + +F ++V R + N D N+++K L V +
Sbjct: 237 SPDVVTYTTLVRGYCMKQEIDEALVVFEEMVSRGLKPN-----DITYNTLIKGLCEVQKF 291
Query: 425 GECNKILKAMEEG-GFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVS 483
+ +IL G GF+ + + + AG DEA + M+ +
Sbjct: 292 DKIKEILGGAVGGRGFVPDTCTYNTLMNAQCDAGNFDEALKMFKKMKELKVQPDSATYSV 351
Query: 484 LIKGHCVAGDLDKAADCFQKMVEK------EGTSHAGYAIDLLVNTYCSKNRAIDACKFV 537
LI+ C GD ++A F K+ ++ +G + A + + + C + A +
Sbjct: 352 LIRNLCQRGDFERAEQLFDKLSDEDILLRDDGCTPLVAAYNPIFDFLCKNGKTHKAERVF 411
Query: 538 HNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPFIKYVS 593
+++ P +Y+ LI + F+ LL M + P + ++ ++
Sbjct: 412 RQLMKKGTQDP--PSYKTLIIGHCKEGTFEAGYKLLLFMLRRDYVPDFETYVLLIN 465
>gi|225457182|ref|XP_002280557.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74850,
chloroplastic [Vitis vinifera]
Length = 869
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 78/359 (21%), Positives = 147/359 (40%), Gaps = 9/359 (2%)
Query: 282 KKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVK 341
+++L F++ + + K +E Y M VLGRE +++ ++ DEM S G + +
Sbjct: 127 QRSLRLFKYMQRQIWCKPNEHIYTIMIGVLGREGLLEKCQEIFDEMPSHGVAPSVFSFTA 186
Query: 342 VLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRE 401
++ + K +++L + + PS+ ++ LD + R
Sbjct: 187 LINAYGRNGQYKSSLELLDRMKKERVSPSILTYNTVINS-CARGGLDWEELLGLFAQMRH 245
Query: 402 NGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDE 461
G N++L A G E + + M EGG + S + + ++
Sbjct: 246 EGIQADIVTYNTLLSACARRGLGDEAEMVFRTMNEGGILPDITTYSYLVETFGKLNRLEK 305
Query: 462 ANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLV 521
+E + ME+ GS + L++ H +G + +A F++M + G +L+
Sbjct: 306 VSELLKEMESGGSFPDITSYNVLLEAHAQSGSIKEAMGVFRQM-QGAGCVPNAATYSILL 364
Query: 522 NTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRG-FKDALSLLCLMKDHG 580
N Y R D + + ++ + +P TY LI N+ + G FK+ ++L M +
Sbjct: 365 NLYGRHGR-YDDVRDLFLEMKVSNTEPNAATYNILI-NVFGEGGYFKEVVTLFHDMVEEN 422
Query: 581 FPPFVDPF---IKYVSKSGTSDDAIAFLKGMTSKR-FPSMSVVLCLFAAFFQARRHSEA 635
P ++ + I K G +DA L M K PS + A+ QA + EA
Sbjct: 423 VEPNMETYEGLIFACGKGGLHEDAKKILLHMNEKGVVPSSKAYTGVIEAYGQAALYEEA 481
Score = 42.0 bits (97), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 99/494 (20%), Positives = 190/494 (38%), Gaps = 50/494 (10%)
Query: 32 NPNLTLHESLHTLSSLLPTSSHTFYSRFSRLPICYSRLINLIDPKNPNFRNPMICSYSSE 91
NPNL H L P + F+ + R+ +R+ PK NP +
Sbjct: 28 NPNLNRH--------LFPAKATDFFG-YQRILASAARI--RAKPKELVLGNPSV------ 70
Query: 92 PAMEQKESDFTVVSDIFYKFSDV---NDISKQLELSGVVFTHEMVLK----VLKNLESSP 144
+E+ + + V + + K S + I++ L+ VF +++ L V K
Sbjct: 71 -TVEKGKYSYDVET-LINKLSSLPPRGSIARCLD----VFKNKLSLNDFALVFKEFAQRG 124
Query: 145 DEAR--RFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVR 202
D R R F ++ + + + Y +M+ ++G GL+++ + D M G +
Sbjct: 125 DWQRSLRLFKYMQRQIWCKPNEHIYTIMIGVLGREGLLEKCQEIFDEMPSHGVAPSVFSF 184
Query: 203 NKMTEKFEKEG-LESDLEKLKGIFATGSIDNSIEKVASRICKVVRSDI-WGD--DVERQL 258
+ + + G +S LE L + + SI + I R + W + + Q+
Sbjct: 185 TALINAYGRNGQYKSSLELLDRM-KKERVSPSILTYNTVINSCARGGLDWEELLGLFAQM 243
Query: 259 RDLN-----VTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGR 313
R VT++ L LGDE A + FR E G + D ++Y+ + G+
Sbjct: 244 RHEGIQADIVTYNTLLSACARRGLGDE---AEMVFRTMNEGGILP-DITTYSYLVETFGK 299
Query: 314 EDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNC 373
+ +++ ++L EM S G ++ + +L ++ +KEA+ ++ P+
Sbjct: 300 LNRLEKVSELLKEMESGGSFPDITSYNVLLEAHAQSGSIKEAMGVFRQMQGAGCVPNAAT 359
Query: 374 CTFLLRKIVVSKQL-DMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILK 432
+ LL + D+R ++V N A N ++ G E +
Sbjct: 360 YSILLNLYGRHGRYDDVRDLFLEMKVSNTEPNA---ATYNILINVFGEGGYFKEVVTLFH 416
Query: 433 AMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAG 492
M E + + F G ++A + + HM G K + +I+ + A
Sbjct: 417 DMVEENVEPNMETYEGLIFACGKGGLHEDAKKILLHMNEKGVVPSSKAYTGVIEAYGQAA 476
Query: 493 DLDKAADCFQKMVE 506
++A F M E
Sbjct: 477 LYEEALVAFNTMNE 490
>gi|225432738|ref|XP_002279088.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22670,
mitochondrial [Vitis vinifera]
Length = 535
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 101/429 (23%), Positives = 175/429 (40%), Gaps = 44/429 (10%)
Query: 220 KLKGIFATGSIDNSIEKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGD 279
K+ G +ID+ I+K+ S + K S D V + L V+ S LV+ V+ + +
Sbjct: 75 KVDGYVLKETIDSDIDKI-SELLKFRHSS--ADAVVQALGGCGVSVSESLVEQVLKRFSN 131
Query: 280 EPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETC 339
+ A FF+WA+ +H +SYN+M +LG+ D W++++EM G + + T
Sbjct: 132 DWIPAFGFFKWAKAQTGYRHSMNSYNSMVDILGKLKKFDLMWELVEEMDRLGGYVSLATM 191
Query: 340 VKVLGRFSERNMVKEAVDLYE-----------FAMAC---------------------KN 367
KV+ R + + K+A++ + AM K+
Sbjct: 192 TKVMRRLARASRWKDAIEAFRGMERFGVKKDTLAMNTLMDALVKENSVEHANDVFVEFKD 251
Query: 368 KPSVNCCTF--LLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMG 425
+N TF L+ ++++D L K + +E+G S+++A
Sbjct: 252 SILLNPHTFNVLIHGWCKARKMDNAL--KSMAEMKEHGFCPDVISYTSIVEAYCREKDFR 309
Query: 426 ECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLI 485
+ N +L MEE G + + + L + +A E + M+ S + SLI
Sbjct: 310 KVNSVLNEMEEKGCPPNVVTYTIVMHALGKGKEISKALEVYEKMKGSSCVPDTSFYSSLI 369
Query: 486 KGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYD 545
AG L A D F+ M K+G + +++ C ++ DA K + + E
Sbjct: 370 YILSKAGRLKDARDVFEDMT-KQGAIPDVLTYNTMISAACMHSQEEDALKLLLK-MEESS 427
Query: 546 LKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPF---IKYVSKSGTSDDAI 602
KP TY L+K K +LL M + V + + + KSG + A
Sbjct: 428 CKPDLNTYSPLLKMCCRNNRMKVLSALLNHMFKNDISLEVGTYSLLVHGLCKSGKLEHAC 487
Query: 603 AFLKGMTSK 611
F + M SK
Sbjct: 488 LFFEEMVSK 496
Score = 58.9 bits (141), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 90/420 (21%), Positives = 170/420 (40%), Gaps = 13/420 (3%)
Query: 95 EQKESDFTVVSDIF-YKFSDVNDISKQLELSGVVFTHEMVLKVLKNLESSPDEARRFFNW 153
E +SD +S++ ++ S + + + L GV + +V +VLK + A FF W
Sbjct: 83 ETIDSDIDKISELLKFRHSSADAVVQALGGCGVSVSESLVEQVLKRFSNDWIPAFGFFKW 142
Query: 154 VLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRNKMTEKFEKEG 213
+ R S +YN M+ I+G W LV+ M + G V+ K+ + +
Sbjct: 143 AKAQTGYRHSMNSYNSMVDILGKLKKFDLMWELVEEMDRLGGYVSLATMTKVMRRLARAS 202
Query: 214 LESD-LEKLKGIFATGSIDNSIEKVASRICKVVRSDI-WGDDVERQLRD---LNVTFSND 268
D +E +G+ G +++ V + + +DV + +D LN N
Sbjct: 203 RWKDAIEAFRGMERFGVKKDTLAMNTLMDALVKENSVEHANDVFVEFKDSILLNPHTFNV 262
Query: 269 LVK-FVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEM 327
L+ + + D K++ + E GF D SY ++ RE + VL+EM
Sbjct: 263 LIHGWCKARKMDNALKSMAEMK---EHGFCP-DVISYTSIVEAYCREKDFRKVNSVLNEM 318
Query: 328 RSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQL 387
KG + T V+ + + +A+++YE P + + L+ ++SK
Sbjct: 319 EEKGCPPNVVTYTIVMHALGKGKEISKALEVYEKMKGSSCVPDTSFYSSLI--YILSKAG 376
Query: 388 DMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKS 447
++ V + G + N+++ A + + K+L MEE N S
Sbjct: 377 RLKDARDVFEDMTKQGAIPDVLTYNTMISAACMHSQEEDALKLLLKMEESSCKPDLNTYS 436
Query: 448 KIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEK 507
+ + + ++HM + + + L+ G C +G L+ A F++MV K
Sbjct: 437 PLLKMCCRNNRMKVLSALLNHMFKNDISLEVGTYSLLVHGLCKSGKLEHACLFFEEMVSK 496
>gi|225452992|ref|XP_002263038.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g12700, mitochondrial-like [Vitis vinifera]
Length = 644
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 79/347 (22%), Positives = 147/347 (42%), Gaps = 12/347 (3%)
Query: 300 DESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLY 359
D +S+ + L E I + D+M +G++ ++ ++ + A+ L
Sbjct: 143 DTASFTTLIKGLCLEGQIGEALHLFDKMIWEGFQPDVVIYATLINGLCKTGHTSAAIRLL 202
Query: 360 EFAMACKNKPSVNCCTFLLRKIVVSKQLD--MRLFSKVVRVFRENGNVLTDAMLNSVLKA 417
+P V L+ + +Q LFS+++ + N++T NS++ A
Sbjct: 203 RSMEKGNCQPDVVVYGTLIHSLCKDRQQTQAFNLFSEMITK-GISPNIVT---CNSLVYA 258
Query: 418 LISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVG 477
L ++G N +L M + + ++ + + L G +A++ +D M SG +
Sbjct: 259 LCNLGEWKHVNTLLNEMVDSKIMPNAISLTTVVDALCKEGMVAQAHDVVDMMFQSGVEPD 318
Query: 478 DKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFV 537
+ +LI GHC+ ++D+A F MV K G + ++ + L+N YC R A
Sbjct: 319 VVTYTALIDGHCLRSEMDEAVKVFDMMVHK-GCAPNVFSYNTLINGYCKIERMDKAMYLF 377
Query: 538 HNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPF---IKYVSK 594
R+ L P TY LI L +DA++L M G P + + + Y+ K
Sbjct: 378 EEMCRQ-KLIPNTVTYNTLIHGLCHVGRLQDAIALFREMVACGQIPDLVTYRILLDYLCK 436
Query: 595 SGTSDDAIAFLKGMTSKRF-PSMSVVLCLFAAFFQARRHSEAQDLLS 640
+ D A+A LK + P + + + +A +A+DL S
Sbjct: 437 NCHLDKAMALLKAIEGSNLDPDIQIYTIVIDGMCRAGELEDARDLFS 483
Score = 48.5 bits (114), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 61/281 (21%), Positives = 114/281 (40%), Gaps = 8/281 (2%)
Query: 303 SYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFA 362
S + L +E + + V+D M G E ++ T ++ R+ + EAV +++
Sbjct: 286 SLTTVVDALCKEGMVAQAHDVVDMMFQSGVEPDVVTYTALIDGHCLRSEMDEAVKVFDMM 345
Query: 363 MACKNKPSVNCCTFLLRKIVVSKQLD--MRLFSKVVRVFRENGNVLTDAMLNSVLKALIS 420
+ P+V L+ +++D M LF ++ R + N +T N+++ L
Sbjct: 346 VHKGCAPNVFSYNTLINGYCKIERMDKAMYLFEEMCRQ-KLIPNTVT---YNTLIHGLCH 401
Query: 421 VGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKM 480
VGR+ + + + M G I + L D+A + +E S D ++
Sbjct: 402 VGRLQDAIALFREMVACGQIPDLVTYRILLDYLCKNCHLDKAMALLKAIEGSNLDPDIQI 461
Query: 481 WVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNC 540
+ +I G C AG+L+ A D F + K G + +++ + C + +A K
Sbjct: 462 YTIVIDGMCRAGELEDARDLFSNLSSK-GLKPNVWTYNIMTHGLCKRGLLDEATKLFME- 519
Query: 541 VREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGF 581
+ E TY + + L A+ LL M GF
Sbjct: 520 MDENACSADGCTYNTITQGFLRNNETSRAIQLLEEMLARGF 560
Score = 43.9 bits (102), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 63/137 (45%), Gaps = 5/137 (3%)
Query: 509 GTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKD 568
G H Y +++L+N++C NR A + + + +P ++ LIK L ++ +
Sbjct: 104 GIPHNVYTLNVLINSFCHLNRVNFAFSVLAK-ILKLGCQPDTASFTTLIKGLCLEGQIGE 162
Query: 569 ALSLLCLMKDHGFPPFV---DPFIKYVSKSGTSDDAIAFLKGMTSKRF-PSMSVVLCLFA 624
AL L M GF P V I + K+G + AI L+ M P + V L
Sbjct: 163 ALHLFDKMIWEGFQPDVVIYATLINGLCKTGHTSAAIRLLRSMEKGNCQPDVVVYGTLIH 222
Query: 625 AFFQARRHSEAQDLLSK 641
+ + R+ ++A +L S+
Sbjct: 223 SLCKDRQQTQAFNLFSE 239
>gi|15228104|ref|NP_181260.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75216851|sp|Q9ZUU3.1|PP190_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g37230
gi|4056478|gb|AAC98044.1| unknown protein [Arabidopsis thaliana]
gi|28973644|gb|AAO64144.1| unknown protein [Arabidopsis thaliana]
gi|110736716|dbj|BAF00321.1| hypothetical protein [Arabidopsis thaliana]
gi|330254276|gb|AEC09370.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 757
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 88/405 (21%), Positives = 164/405 (40%), Gaps = 47/405 (11%)
Query: 216 SDLEKLKGIFATGSIDNSIEKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVD 275
++ L+ F G N EK+ IC+++ + W ++ +RDL + + LV V+
Sbjct: 67 TETRPLRERFQRGKRQNH-EKLEDTICRMMDNRAWTTRLQNSIRDLVPEWDHSLVYNVLH 125
Query: 276 KLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEME 335
+ + AL FFRW E SG ++HD ++ M +LG ++ +L +M KG +
Sbjct: 126 G-AKKLEHALQFFRWTERSGLIRHDRDTHMKMIKMLGEVSKLNHARCILLDMPEKGVPWD 184
Query: 336 METCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKV 395
+ V ++ + + +V+E+V K+
Sbjct: 185 EDMFVVLIESYGKAGIVQESV-------------------------------------KI 207
Query: 396 VRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSS 455
+ ++ G T NS+ K ++ GR + M G + + + + +
Sbjct: 208 FQKMKDLGVERTIKSYNSLFKVILRRGRYMMAKRYFNKMVSEGVEPTRHTYNLMLWGFFL 267
Query: 456 AGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMV-EKEGTSHAG 514
+ + + A F + M+ G D + ++I G C +D+A F +M K G S
Sbjct: 268 SLRLETALRFFEDMKTRGISPDDATFNTMINGFCRFKKMDEAEKLFVEMKGNKIGPSVVS 327
Query: 515 YAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLL- 573
Y ++ Y + +R D + +R ++P TTY L+ L +A ++L
Sbjct: 328 YTT--MIKGYLAVDRVDDGLRIFEE-MRSSGIEPNATTYSTLLPGLCDAGKMVEAKNILK 384
Query: 574 CLMKDHGFPPFVDPFIKYV---SKSGTSDDAIAFLKGMTSKRFPS 615
+M H P F+K + SK+G A LK M + P+
Sbjct: 385 NMMAKHIAPKDNSIFLKLLVSQSKAGDMAAATEVLKAMATLNVPA 429
>gi|449442096|ref|XP_004138818.1| PREDICTED: pentatricopeptide repeat-containing protein At1g79490,
mitochondrial-like [Cucumis sativus]
gi|449490234|ref|XP_004158545.1| PREDICTED: pentatricopeptide repeat-containing protein At1g79490,
mitochondrial-like [Cucumis sativus]
Length = 823
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 108/475 (22%), Positives = 204/475 (42%), Gaps = 77/475 (16%)
Query: 239 SRICKVVRSDIWGDDVERQLRDL----NVTFSNDLVKFVVDKLGDEPKKALIFFRWAE-E 293
++I +VVR WG ++E QL L N+T ++K + D+ + +L FRWA+ +
Sbjct: 131 AKIVEVVRRWKWGPELESQLEKLQFVPNMTHITQVLKII-----DDAEASLSLFRWAKRQ 185
Query: 294 SGFVKHDE-------------------------------------SSYNAMASVLGREDC 316
S + +DE S+YN + L + +
Sbjct: 186 SWYSPNDECYGLLFDGLNQRRDFDAIQLLFDEVVRDLSSDETVSFSAYNRVIQYLAKAEK 245
Query: 317 IDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTF 376
++ + ++ G++++ +T ++ F + + +A ++YE + +
Sbjct: 246 LEVSFCCFKKIHDSGFKVDTQTYNSLITLFLNKGLPYKAFEIYESMAGAECSLDASTFEL 305
Query: 377 LLRKIVVSKQLD--MRLFSKVV-RVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKA 433
++ + S +LD M+LF ++ + +R NV + ++++S+ KA GR+ KI
Sbjct: 306 MIPCLAKSGRLDAAMKLFQEMKEKKYRPAQNVYS-SLVDSMGKA----GRLDTSMKIYME 360
Query: 434 MEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGD 493
M+ S+ M + AGK D A + D M+ +G ++ +++ H +G
Sbjct: 361 MQLLELRPSALMFVSLIESHVKAGKLDTALKLWDDMKRAGFKPNFGLYSMVVESHAKSGK 420
Query: 494 LDKAADCFQKMVEKEGTSHAGYAIDLLVNTYC------SKNRAIDACKFVHNCVREYDLK 547
LD A F +M EK G + +TYC + + +DA ++N + L+
Sbjct: 421 LDVAMSVFTEM-EKAGFLP-------IPSTYCCLLEMQAASGHVDAAMKLYNSMTNAGLR 472
Query: 548 PWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFV---DPFIKYVSKSGTSDDAIAF 604
TY L+ L ++ A +L MK GF V D + Y+ K G+ D A+ +
Sbjct: 473 LGLNTYTSLLTLLANKKLIDIAAKVLLEMKAMGFSVSVSASDVLMVYI-KEGSVDSALRW 531
Query: 605 LKGMTSKRFPSMSVVL-CLFAAFFQARRHSEAQDLLSKCPRYVRNHADVLNLLYS 658
L+ M S + S ++ LF + + + A LL YV + A V +LY+
Sbjct: 532 LQFMGSSGIRTNSFIIRQLFESCMKKGMYESAMPLLET---YVNSAAKVDLILYT 583
>gi|357444525|ref|XP_003592540.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355481588|gb|AES62791.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 507
Score = 76.6 bits (187), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 80/342 (23%), Positives = 151/342 (44%), Gaps = 11/342 (3%)
Query: 238 ASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFV 297
A IC+++ S V+ LR+ V S +LV V++KL + AL FFRWAE+
Sbjct: 58 AETICRIL-STTPESPVDVSLRNFPVEVSPELVVAVLNKLSNAGILALSFFRWAEKQQGF 116
Query: 298 KHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVD 357
H+ ++A+ LG+ W ++DEM+ + + +T + R+ ++KEA+
Sbjct: 117 NHNTEIFHALIEALGKIRQFKMIWNLVDEMKQRKL-LNGDTFSLIARRYVRAKVIKEALK 175
Query: 358 LYEFAMACKNKPSVNCCTFLLRKIVVSK---QLDMRLFSKVVRVFRENGNVLTDAMLNSV 414
+E KP ++ L+ + SK + LF K +R + N+ + +L
Sbjct: 176 TFERMEKYGLKPQISDFNKLIDVLCKSKFHVEKAQELFDK-MRQWNLEPNLKSYTIL--- 231
Query: 415 LKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGS 474
++ + + +++ + M++ GF I A K DEA M +
Sbjct: 232 IEGWSQQQNLLKVDEVCREMKDDGFQPDVVTYGIIINAYCKAKKYDEAIGIYHDMLSKNV 291
Query: 475 DVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDAC 534
+ ++ + I G +D+A + F+K + G + +V+ YC R DA
Sbjct: 292 NPSPHIYCTFITGLGNGSRMDEAFEFFEK-SKASGFPPEAPTYNAVVSAYCWSMRIDDAY 350
Query: 535 KFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLM 576
+ V ++E + P TY+ ++ +L+ K+A S+ M
Sbjct: 351 RIVGE-MKELGIGPNARTYDIILVHLIKGGRTKEAYSVFQRM 391
Score = 56.2 bits (134), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 80/414 (19%), Positives = 167/414 (40%), Gaps = 50/414 (12%)
Query: 131 EMVLKVLKNLESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLVDVM 190
E+V+ VL L ++ A FF W +++ +++ ++ ++ +G + W LVD M
Sbjct: 87 ELVVAVLNKLSNAGILALSFFRWAEKQQGFNHNTEIFHALIEALGKIRQFKMIWNLVDEM 146
Query: 191 KKK----GYGVASHVRNKMTEKFEKEGLESDLEKLKGIFATGSIDNSIEKVASRICKVVR 246
K++ G + R + K KE L++ E+++ I + K+ +CK
Sbjct: 147 KQRKLLNGDTFSLIARRYVRAKVIKEALKT-FERMEKYGLKPQISD-FNKLIDVLCKSKF 204
Query: 247 SDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNA 306
++ ++R N+ +L + + G W+++ +K DE
Sbjct: 205 HVEKAQELFDKMRQWNL--EPNLKSYTILIEG-----------WSQQQNLLKVDE----- 246
Query: 307 MASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACK 366
V EM+ G++ ++ T ++ + + EA+ +Y ++
Sbjct: 247 ----------------VCREMKDDGFQPDVVTYGIIINAYCKAKKYDEAIGIYHDMLSKN 290
Query: 367 NKPSVNC-CTFLLRKIVVSKQLD--MRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGR 423
PS + CTF + + ++D F K + +G N+V+ A R
Sbjct: 291 VNPSPHIYCTF-ITGLGNGSRMDEAFEFFEKS----KASGFPPEAPTYNAVVSAYCWSMR 345
Query: 424 MGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEA-SGSDVGDKMWV 482
+ + +I+ M+E G ++ I L G+ EA M + +G + +
Sbjct: 346 IDDAYRIVGEMKELGIGPNARTYDIILVHLIKGGRTKEAYSVFQRMSSETGCEPSVSTYA 405
Query: 483 SLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKF 536
+++ C LD A + +M +K G + L+ + C +N+ DAC++
Sbjct: 406 IMVRMFCNENQLDMAMVVWNEMKDK-GILPGIHMFSTLIISLCHENKLDDACRY 458
>gi|296088470|emb|CBI37461.3| unnamed protein product [Vitis vinifera]
Length = 822
Score = 76.6 bits (187), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 111/478 (23%), Positives = 183/478 (38%), Gaps = 75/478 (15%)
Query: 136 VLKNLESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLVDVM-KKKG 194
V+ L S+P A RFF W +E +G+ VQ F G+ V+ + +
Sbjct: 61 VVFQLRSNPTSALRFFEW-----AENF-----------LGLCHPVQSFCGIAHVLLRHRM 104
Query: 195 YGVASHVRNKMTEKFEKEGLESDLEKLKGIFATGSIDNSIEKVASRICKVVRSDIWGDDV 254
+ A+ V ++M +F +LE L G S S S ++ +
Sbjct: 105 FDPATRVFDRMVGQF------GNLEVL------GEFHGSFRNYGSN-----PSTVYSFLL 147
Query: 255 ERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGRE 314
R N +V VD F W + G V + + M +L
Sbjct: 148 HCYCR-------NGMVDRAVDT-----------FAWMSKMG-VSISHYAASEMLDLLIDS 188
Query: 315 DCIDRFWKVLDEMRSKG---YEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSV 371
D ID + +EM KG YE V F +R V++ ++ + + P +
Sbjct: 189 DRIDVILENYEEM-CKGLGVYEF-------VFNSFLKRGEVEKGLNFHRALVERGLVPKI 240
Query: 372 NCCTFLLRKIVVSKQLDMR--LFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNK 429
C +L+ + + Q+ + F +VR V ++N K L R+ E
Sbjct: 241 VDCNKILKGLCMGNQIGVASDFFDMMVRSGPSPNLVTFSTLINVYCKEL----RLDEAFS 296
Query: 430 ILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHC 489
+ M E G + + S + L AGK +E N A G + ++ S++ +
Sbjct: 297 LYNLMIEKGIVPDLVIYSILINGLFRAGKLEEGNSLFSMALARGVKMDVVIFSSIMDAYV 356
Query: 490 VAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPW 549
GDL KA + + +M+ KEG S +L+N C R ++AC +++ L+P
Sbjct: 357 RVGDLGKAIEVYTRML-KEGISPNVVTYSILINGLCRNGRVLEACGVFGQILKQ-GLEPS 414
Query: 550 HTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFV---DPFIKYVSKSGTSDDAIAF 604
TY LI +D L +M G P V I +S+ G D+A+ F
Sbjct: 415 VLTYSSLIDGFCKSENLRDGFGLYGIMLRKGHVPDVVVCSMLINGLSRQGMMDEALRF 472
>gi|225433712|ref|XP_002266503.1| PREDICTED: pentatricopeptide repeat-containing protein At1g02060,
chloroplastic-like [Vitis vinifera]
Length = 746
Score = 76.6 bits (187), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 97/427 (22%), Positives = 169/427 (39%), Gaps = 76/427 (17%)
Query: 236 KVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESG 295
K + + +++ ++ W +++ L +L + S V +L P KAL FFRW E G
Sbjct: 64 KRSQAMARLINTEPWSHELQSSLAELAPSLSKTTV-LQTLQLIRTPAKALHFFRWVEAKG 122
Query: 296 FVKHDESSYNAMASVLGREDCI---------------------DRFWKVLDEMRSKGYEM 334
F H+E SY M +LGR + DRF+ L +RS G+
Sbjct: 123 FT-HNEQSYFLMIEILGRSRNLNAARNFVFSIEKKSGGAVKLGDRFFNSL--IRSYGWAG 179
Query: 335 EMETCVKVL-------------------------GRFS-ERNMVKEAVDLYEFAMACKNK 368
+ +KV GR S + + E +D Y
Sbjct: 180 LFQESIKVFKTMKEIGVSPSVVTFNSLLSIVLKRGRTSMAKQLFDEMLDTYGVT------ 233
Query: 369 PSVNCCTFLLRKIVVSKQLDMRL-FSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGEC 427
P L+R ++ +D F K + F+ + +V+T N+++ L G++
Sbjct: 234 PDTYTFNILIRGFCMNSMVDEGFWFFKEMSRFKCDPDVVT---YNTLVDGLCRAGKVKIA 290
Query: 428 NKILKAMEEGGFIASSNMKSKIAFRLSSAGKKD--EANEFMDHMEASGSDVGDKMWVSLI 485
+ ++K M + S N+ + K+D EA + M + G + +LI
Sbjct: 291 HNVVKGMVKKSPNLSPNVVTYTTLIRGYCMKQDMAEALSLLAEMVSRGLKPNKITYNTLI 350
Query: 486 KGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYD 545
+G C A LDK + + MV G ++ L+ +C+ + +A V + E
Sbjct: 351 QGLCEAQKLDKIKEILEGMVGDGGFIPDTCTLNTLIKAHCTMGKLEEAFS-VFEKMSELR 409
Query: 546 LKPWHTTYEELIKNLLVQRG--------FKDALSLLCLMKDHGFPPFV---DPFIKYVSK 594
++P TY L+++ L QRG F + L+ D G P V +P +Y+
Sbjct: 410 VQPDSATYSVLVRS-LCQRGDFRRAEEFFDELAEKEILLHDVGCKPLVAAYNPMFEYLCS 468
Query: 595 SGTSDDA 601
+G + A
Sbjct: 469 NGKTKKA 475
Score = 42.7 bits (99), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 95/429 (22%), Positives = 176/429 (41%), Gaps = 52/429 (12%)
Query: 133 VLKVLKNLESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLVDVMKK 192
VL+ L+ L +P +A FF WV E + + ++Y LM+ I+G + V ++K
Sbjct: 98 VLQTLQ-LIRTPAKALHFFRWV-EAKGFTHNEQSYFLMIEILGRSRNLNAARNFVFSIEK 155
Query: 193 KGYG---VASHVRNKMTEKFEKEGLESD----LEKLKGIFATGSIDNSIEKVASRICKVV 245
K G + N + + GL + + +K I + S+ + + S + K
Sbjct: 156 KSGGAVKLGDRFFNSLIRSYGWAGLFQESIKVFKTMKEIGVSPSV-VTFNSLLSIVLKRG 214
Query: 246 RSDIWGDDVERQLRDLNVT-----FSNDLVKFVVDKLGDEPKKALIFFRWAEESGF-VKH 299
R+ + + L VT F+ + F ++ + DE F+ + E S F
Sbjct: 215 RTSMAKQLFDEMLDTYGVTPDTYTFNILIRGFCMNSMVDEG-----FWFFKEMSRFKCDP 269
Query: 300 DESSYNAMASVLGREDCIDRFWKVLDEM--RSKGYEMEMETCVKVLGRFSERNMVKEAVD 357
D +YN + L R + V+ M +S + T ++ + + + EA+
Sbjct: 270 DVVTYNTLVDGLCRAGKVKIAHNVVKGMVKKSPNLSPNVVTYTTLIRGYCMKQDMAEALS 329
Query: 358 LYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDA-MLNSVLK 416
L ++ KP+ L++ + +++LD +++ +G + D LN+++K
Sbjct: 330 LLAEMVSRGLKPNKITYNTLIQGLCEAQKLDK--IKEILEGMVGDGGFIPDTCTLNTLIK 387
Query: 417 ALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHM---EASG 473
A ++G++ E + + M E S S + L G A EF D + E
Sbjct: 388 AHCTMGKLEEAFSVFEKMSELRVQPDSATYSVLVRSLCQRGDFRRAEEFFDELAEKEILL 447
Query: 474 SDVGDKMWVS----LIKGHCVAGDLDKAADCFQKMVE-----------------KEGTSH 512
DVG K V+ + + C G KA F+++++ +EGT
Sbjct: 448 HDVGCKPLVAAYNPMFEYLCSNGKTKKAERVFRQLMKRGTQDPPSYKTLILGHCREGTPE 507
Query: 513 AGYAIDLLV 521
AG+ DLLV
Sbjct: 508 AGF--DLLV 514
Score = 42.0 bits (97), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 59/269 (21%), Positives = 108/269 (40%), Gaps = 24/269 (8%)
Query: 412 NSVLKALISVGRMGECNKILKAM-EEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHME 470
N++++ L ++ + +IL+ M +GGFI + + + + GK +EA + M
Sbjct: 347 NTLIQGLCEAQKLDKIKEILEGMVGDGGFIPDTCTLNTLIKAHCTMGKLEEAFSVFEKMS 406
Query: 471 ASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKE------GTSHAGYAIDLLVNTY 524
+ L++ C GD +A + F ++ EKE G A + +
Sbjct: 407 ELRVQPDSATYSVLVRSLCQRGDFRRAEEFFDELAEKEILLHDVGCKPLVAAYNPMFEYL 466
Query: 525 CSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPF 584
CS + A + ++ P +Y+ LI + + LL LM F P
Sbjct: 467 CSNGKTKKAERVFRQLMKRGTQDP--PSYKTLILGHCREGTPEAGFDLLVLMLRRDFVPD 524
Query: 585 VDPF---IKYVSKSGTSDDAIA---FLKGMTSKRFPSMSVVLCLFAAFFQARRHSEAQDL 638
+ + I + K G D +A K + S P+ ++ + AA + E+ L
Sbjct: 525 AETYGLMIDGLLKKG--DPVLAHKSLEKMLKSSHLPTTAIFHSILAALVEKGCAHESASL 582
Query: 639 LS-KCPRYVRNHADV----LNLLYSKKSG 662
+ R +R + D+ + LLY KSG
Sbjct: 583 VKLMLERRIRQNIDLSTHTVRLLY--KSG 609
>gi|296089633|emb|CBI39452.3| unnamed protein product [Vitis vinifera]
Length = 718
Score = 76.6 bits (187), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 97/427 (22%), Positives = 170/427 (39%), Gaps = 76/427 (17%)
Query: 236 KVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESG 295
K + + +++ ++ W +++ L +L + S V + +L P KAL FFRW E G
Sbjct: 64 KRSQAMARLINTEPWSHELQSSLAELAPSLSKTTVLQTL-QLIRTPAKALHFFRWVEAKG 122
Query: 296 FVKHDESSYNAMASVLGREDCI---------------------DRFWKVLDEMRSKGYEM 334
F H+E SY M +LGR + DRF+ L +RS G+
Sbjct: 123 FT-HNEQSYFLMIEILGRSRNLNAARNFVFSIEKKSGGAVKLGDRFFNSL--IRSYGWAG 179
Query: 335 EMETCVKVL-------------------------GRFS-ERNMVKEAVDLYEFAMACKNK 368
+ +KV GR S + + E +D Y
Sbjct: 180 LFQESIKVFKTMKEIGVSPSVVTFNSLLSIVLKRGRTSMAKQLFDEMLDTYGVT------ 233
Query: 369 PSVNCCTFLLRKIVVSKQLDMRL-FSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGEC 427
P L+R ++ +D F K + F+ + +V+T N+++ L G++
Sbjct: 234 PDTYTFNILIRGFCMNSMVDEGFWFFKEMSRFKCDPDVVT---YNTLVDGLCRAGKVKIA 290
Query: 428 NKILKAMEEGGFIASSNMKSKIAFRLSSAGKKD--EANEFMDHMEASGSDVGDKMWVSLI 485
+ ++K M + S N+ + K+D EA + M + G + +LI
Sbjct: 291 HNVVKGMVKKSPNLSPNVVTYTTLIRGYCMKQDMAEALSLLAEMVSRGLKPNKITYNTLI 350
Query: 486 KGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYD 545
+G C A LDK + + MV G ++ L+ +C+ + +A V + E
Sbjct: 351 QGLCEAQKLDKIKEILEGMVGDGGFIPDTCTLNTLIKAHCTMGKLEEAFS-VFEKMSELR 409
Query: 546 LKPWHTTYEELIKNLLVQRG--------FKDALSLLCLMKDHGFPPFV---DPFIKYVSK 594
++P TY L+++ L QRG F + L+ D G P V +P +Y+
Sbjct: 410 VQPDSATYSVLVRS-LCQRGDFRRAEEFFDELAEKEILLHDVGCKPLVAAYNPMFEYLCS 468
Query: 595 SGTSDDA 601
+G + A
Sbjct: 469 NGKTKKA 475
Score = 42.7 bits (99), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 95/429 (22%), Positives = 176/429 (41%), Gaps = 52/429 (12%)
Query: 133 VLKVLKNLESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLVDVMKK 192
VL+ L+ L +P +A FF WV E + + ++Y LM+ I+G + V ++K
Sbjct: 98 VLQTLQ-LIRTPAKALHFFRWV-EAKGFTHNEQSYFLMIEILGRSRNLNAARNFVFSIEK 155
Query: 193 KGYG---VASHVRNKMTEKFEKEGLESD----LEKLKGIFATGSIDNSIEKVASRICKVV 245
K G + N + + GL + + +K I + S+ + + S + K
Sbjct: 156 KSGGAVKLGDRFFNSLIRSYGWAGLFQESIKVFKTMKEIGVSPSV-VTFNSLLSIVLKRG 214
Query: 246 RSDIWGDDVERQLRDLNVT-----FSNDLVKFVVDKLGDEPKKALIFFRWAEESGF-VKH 299
R+ + + L VT F+ + F ++ + DE F+ + E S F
Sbjct: 215 RTSMAKQLFDEMLDTYGVTPDTYTFNILIRGFCMNSMVDEG-----FWFFKEMSRFKCDP 269
Query: 300 DESSYNAMASVLGREDCIDRFWKVLDEM--RSKGYEMEMETCVKVLGRFSERNMVKEAVD 357
D +YN + L R + V+ M +S + T ++ + + + EA+
Sbjct: 270 DVVTYNTLVDGLCRAGKVKIAHNVVKGMVKKSPNLSPNVVTYTTLIRGYCMKQDMAEALS 329
Query: 358 LYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDA-MLNSVLK 416
L ++ KP+ L++ + +++LD +++ +G + D LN+++K
Sbjct: 330 LLAEMVSRGLKPNKITYNTLIQGLCEAQKLDK--IKEILEGMVGDGGFIPDTCTLNTLIK 387
Query: 417 ALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHM---EASG 473
A ++G++ E + + M E S S + L G A EF D + E
Sbjct: 388 AHCTMGKLEEAFSVFEKMSELRVQPDSATYSVLVRSLCQRGDFRRAEEFFDELAEKEILL 447
Query: 474 SDVGDKMWVS----LIKGHCVAGDLDKAADCFQKMVE-----------------KEGTSH 512
DVG K V+ + + C G KA F+++++ +EGT
Sbjct: 448 HDVGCKPLVAAYNPMFEYLCSNGKTKKAERVFRQLMKRGTQDPPSYKTLILGHCREGTPE 507
Query: 513 AGYAIDLLV 521
AG+ DLLV
Sbjct: 508 AGF--DLLV 514
Score = 40.8 bits (94), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 53/255 (20%), Positives = 101/255 (39%), Gaps = 18/255 (7%)
Query: 412 NSVLKALISVGRMGECNKILKAM-EEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHME 470
N++++ L ++ + +IL+ M +GGFI + + + + GK +EA + M
Sbjct: 347 NTLIQGLCEAQKLDKIKEILEGMVGDGGFIPDTCTLNTLIKAHCTMGKLEEAFSVFEKMS 406
Query: 471 ASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKE------GTSHAGYAIDLLVNTY 524
+ L++ C GD +A + F ++ EKE G A + +
Sbjct: 407 ELRVQPDSATYSVLVRSLCQRGDFRRAEEFFDELAEKEILLHDVGCKPLVAAYNPMFEYL 466
Query: 525 CSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPF 584
CS + A + ++ P +Y+ LI + + LL LM F P
Sbjct: 467 CSNGKTKKAERVFRQLMKRGTQDP--PSYKTLILGHCREGTPEAGFDLLVLMLRRDFVPD 524
Query: 585 VDPF---IKYVSKSGTSDDAIA---FLKGMTSKRFPSMSVVLCLFAAFFQARRHSEAQDL 638
+ + I + K G D +A K + S P+ ++ + AA + E+ L
Sbjct: 525 AETYGLMIDGLLKKG--DPVLAHKSLEKMLKSSHLPTTAIFHSILAALVEKGCAHESASL 582
Query: 639 LS-KCPRYVRNHADV 652
+ R +R + D+
Sbjct: 583 VKLMLERRIRQNIDL 597
>gi|224083253|ref|XP_002306972.1| predicted protein [Populus trichocarpa]
gi|222856421|gb|EEE93968.1| predicted protein [Populus trichocarpa]
Length = 709
Score = 76.6 bits (187), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 115/528 (21%), Positives = 217/528 (41%), Gaps = 51/528 (9%)
Query: 121 LELSGVVFTHEMVLKVLKNLESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLV 180
L+ + F++E++ +L + + ++ + + L + + L+ TYN ++ + +
Sbjct: 158 LQKHNLCFSYELLYSILIH---ALGQSEKLYEAFLLSQRQNLTPLTYNALISACARNNDL 214
Query: 181 QEFWGLVDVMKKKGYGVASHVRNKMTEKFEKEGLESDLEKLKGIFATGSIDNSIEKVASR 240
++ L+ M++ GY SD I + N +V S
Sbjct: 215 EKALNLITRMRQDGY-------------------PSDFVNYSLIIRSLMRKN---RVDSA 252
Query: 241 ICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHD 300
I + + +I D +E L+V SND++ K GD KAL F + SG +
Sbjct: 253 ILQKLYREIECDKLE-----LDVQLSNDIIVGFA-KAGDL-SKALEFLGVVQGSG-LSVK 304
Query: 301 ESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYE 360
++ A+ LG + +EMR G + +L + + ++K+A E
Sbjct: 305 TATLVAVIWALGNCGRTVEAEAIFEEMRDNGLKPRTRAYNALLRGYVKAGLLKDA----E 360
Query: 361 FAMACKNK----PSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDA-MLNSVL 415
F ++ + P+ +FL+ + + + +++V E NV +A + + +L
Sbjct: 361 FVVSEMERSGVSPNEQTYSFLIDAYGNAGRWES---ARIVLKEMEASNVQPNAYVFSRIL 417
Query: 416 KALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSD 475
+ G + ++L+ ME G + + D A D M + G +
Sbjct: 418 SSYRDKGEWQKSFQVLREMENSGVRPDRVFYNVMIDTFGKFNCLDHAMATFDRMLSEGIE 477
Query: 476 VGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACK 535
W +LI HC AG D+A + F++M+E G S ++++N++ + R D
Sbjct: 478 PDTVTWNTLIDCHCRAGKHDRAEELFEEMMEG-GYSPCNTTFNIMINSFGDQERWDDVKN 536
Query: 536 FVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPP---FVDPFIKYV 592
+ + +R L P TY LI F DA+ L MK G P + I
Sbjct: 537 LLAH-MRSQGLVPNSVTYTTLIDIYGKSGRFNDAIECLDDMKAAGLKPSSTMYNALINAY 595
Query: 593 SKSGTSDDAIAFLKGMTSKRF-PSMSVVLCLFAAFFQARRHSEAQDLL 639
++ G S+ A++ + M PS+ + L AF + RR +EA +L
Sbjct: 596 AQRGLSEQAVSAFRAMRVDGLKPSLLALNSLINAFGEDRRDAEAFTVL 643
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 104/492 (21%), Positives = 177/492 (35%), Gaps = 76/492 (15%)
Query: 98 ESDFTVVSDIFYKFSDVNDISKQLELSGVVFTHEMVLKVLKNLESSPDEARRFFNWVLEK 157
E D + +DI F+ D+SK LE GVV
Sbjct: 267 ELDVQLSNDIIVGFAKAGDLSKALEFLGVV------------------------------ 296
Query: 158 ESERLSSKTYNLMLRI--VGVHGLVQEFWGLVDVMKKKGYGVASHVRNKMTEKFEKEGLE 215
+ LS KT L+ I +G G E + + M+ G + N + + K GL
Sbjct: 297 QGSGLSVKTATLVAVIWALGNCGRTVEAEAIFEEMRDNGLKPRTRAYNALLRGYVKAGLL 356
Query: 216 SDLEKLKGIFATGSIDNSIEKVASRICKVVRSDIWGDD--VERQLRDLNVTFSNDLVKFV 273
D E + + + + + I + W V +++ NV + + +
Sbjct: 357 KDAEFVVSEMERSGVSPNEQTYSFLIDAYGNAGRWESARIVLKEMEASNVQPNAYVFSRI 416
Query: 274 VDKLGD--EPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKG 331
+ D E +K+ R E SG V+ D YN M G+ +C+D D M S+G
Sbjct: 417 LSSYRDKGEWQKSFQVLREMENSG-VRPDRVFYNVMIDTFGKFNCLDHAMATFDRMLSEG 475
Query: 332 YEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRL 391
E + T ++ A +L+E M
Sbjct: 476 IEPDTVTWNTLIDCHCRAGKHDRAEELFEEMM---------------------------- 507
Query: 392 FSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAF 451
E G + N ++ + R + +L M G + +S + +
Sbjct: 508 ---------EGGYSPCNTTFNIMINSFGDQERWDDVKNLLAHMRSQGLVPNSVTYTTLID 558
Query: 452 RLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTS 511
+G+ ++A E +D M+A+G M+ +LI + G ++A F+ M +G
Sbjct: 559 IYGKSGRFNDAIECLDDMKAAGLKPSSTMYNALINAYAQRGLSEQAVSAFRAM-RVDGLK 617
Query: 512 HAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALS 571
+ A++ L+N + R +A V ++E DLKP TY L+K L+ F S
Sbjct: 618 PSLLALNSLINAFGEDRRDAEAFT-VLQYMKENDLKPDVVTYTTLMKALIRVEKFDKVPS 676
Query: 572 LLCLMKDHGFPP 583
+ M G P
Sbjct: 677 VYEEMILSGCTP 688
>gi|224128340|ref|XP_002320305.1| predicted protein [Populus trichocarpa]
gi|222861078|gb|EEE98620.1| predicted protein [Populus trichocarpa]
Length = 540
Score = 76.3 bits (186), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 86/353 (24%), Positives = 152/353 (43%), Gaps = 13/353 (3%)
Query: 240 RICKVVRSDIWGD-DVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRW-AEESGFV 297
++CKV+ D ++E L + + S+DLV V+++ K A FF W AE+ GFV
Sbjct: 78 KVCKVIDELFALDHNMEAVLDECGINLSHDLVIEVLERFRHARKPAFRFFCWAAEKPGFV 137
Query: 298 KHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVD 357
HD +Y++M +L + + +L+EM K + ++T + F+ K+AV
Sbjct: 138 -HDSRTYHSMMIILAKARQFETMMSMLEEMGEKRL-LTLDTFSIAMRAFAAAKERKKAVG 195
Query: 358 LYEFAMACKNKPSVNCCTFLLRKIVVSK--QLDMRLFSKVVRVFRENGNVLTDAMLNSVL 415
++E K + V LL + +K + LF K+ F N T +L
Sbjct: 196 IFELMKNHKYRVGVETINALLDSLGRAKLGKEAQALFGKLEGRFTPNLRTYT-----VLL 250
Query: 416 KALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSD 475
V + E +I M + GF + + L + K+ +A +F + M+A G
Sbjct: 251 NGWCRVKNLMEAGRIWNEMLDEGFKPDIVTHNIMLEGLLRSKKRSDAIKFFEVMKAKGPS 310
Query: 476 VGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACK 535
+ + LI+ C + +A F +MV + H A+ + T ++ +D
Sbjct: 311 PDVRSYTILIRDLCKQTKMKEAVGYFYEMV--DSGCHPDAAVYTCLMTGYGNHKRMDMVY 368
Query: 536 FVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPF 588
+ ++E P TY LIK + QR DA+ + M +G P + +
Sbjct: 369 ELLKEMKEKGCPPDGKTYNALIKLMTSQRMPDDAVRIYKKMIQNGIEPSIHSY 421
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 91/437 (20%), Positives = 169/437 (38%), Gaps = 79/437 (18%)
Query: 111 FSDVNDISKQLELSGVVFTHEMVLKVLKNLESSPDEARRFFNWVLEKESERLSSKTYNLM 170
F+ +++ L+ G+ +H++V++VL+ + A RFF W EK S+TY+ M
Sbjct: 87 FALDHNMEAVLDECGINLSHDLVIEVLERFRHARKPAFRFFCWAAEKPGFVHDSRTYHSM 146
Query: 171 LRIVG-------VHGLVQEFW---------------------------GLVDVMKKKGYG 196
+ I+ + +++E G+ ++MK Y
Sbjct: 147 MIILAKARQFETMMSMLEEMGEKRLLTLDTFSIAMRAFAAAKERKKAVGIFELMKNHKYR 206
Query: 197 VASHVRNKMTEKFEKEGLESDLE----KLKGIFATGSIDNSIEKVASRICKVVR----SD 248
V N + + + L + + KL+G F ++ + + C+V
Sbjct: 207 VGVETINALLDSLGRAKLGKEAQALFGKLEGRFTPNLRTYTV--LLNGWCRVKNLMEAGR 264
Query: 249 IWGDDVERQLRDLNVTFS------------NDLVKF--VVDKLGDEP------------- 281
IW + ++ + VT + +D +KF V+ G P
Sbjct: 265 IWNEMLDEGFKPDIVTHNIMLEGLLRSKKRSDAIKFFEVMKAKGPSPDVRSYTILIRDLC 324
Query: 282 -----KKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEM 336
K+A+ +F +SG D + Y + + G +D +++L EM+ KG +
Sbjct: 325 KQTKMKEAVGYFYEMVDSG-CHPDAAVYTCLMTGYGNHKRMDMVYELLKEMKEKGCPPDG 383
Query: 337 ETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVV 396
+T ++ + + M +AV +Y+ + +PS++ +++ + +M V
Sbjct: 384 KTYNALIKLMTSQRMPDDAVRIYKKMIQNGIEPSIHSYNMIMKSYFRIRNYEMG--HAVW 441
Query: 397 RVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSA 456
+ G D + LIS GR E K L+ M E G A +K A S A
Sbjct: 442 DEMSKKGFCPDDNSYTVFIGGLISQGRSEEACKYLEEMIEKGMKAPQLDYNKFAADFSRA 501
Query: 457 GKKDEANEFMDHMEASG 473
GK D E M+ SG
Sbjct: 502 GKPDILEELAQKMKFSG 518
>gi|326524964|dbj|BAK04418.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 565
Score = 76.3 bits (186), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 85/368 (23%), Positives = 159/368 (43%), Gaps = 21/368 (5%)
Query: 234 IEKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAE- 292
+ + A R+C+V+ S + V L L + S LV V+ L + AL FFRWAE
Sbjct: 113 VSEEAERVCRVL-STLPEPRVPAALDALGASVSPQLVAEVLKNLSNAGILALAFFRWAER 171
Query: 293 ESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMV 352
+ GFV + S++ + LG+ W +++ MR +G + +T ++ R++ V
Sbjct: 172 QQGFV-YTADSFHNLIEALGKIKQFRLVWSLVEAMRCRGL-LSKDTFRLIVRRYARARKV 229
Query: 353 KEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLN 412
KEAV+ +E K ++ +L+ V+SK ++ + + + NG + D
Sbjct: 230 KEAVETFEKMAGFGLKADLSDYNWLID--VLSKSKQVKKAHAIFKEMKRNGRFVPDLKTY 287
Query: 413 SVL-------KALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEF 465
+VL K L+ + + + M + G + +GK DEA +
Sbjct: 288 TVLMEGWGHEKDLLML------KSVYQEMLDAGLQPDVVAYGMLISSFCKSGKCDEAIKV 341
Query: 466 MDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYC 525
ME +G ++ LI G LD+A F+ + + G + +V YC
Sbjct: 342 FREMETNGCMPSPHVYCMLINGLGSEERLDEALKYFE-LSKASGFPMEVPTCNAVVGAYC 400
Query: 526 SKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFV 585
++ A K V +R+ + P TY+ ++ +L+ + ++A ++ M G P +
Sbjct: 401 RSSKFQHAFKMVDE-MRKSGIGPNSRTYDIILHHLIKSQKIEEAYNVFQGMSKDGCEPQL 459
Query: 586 DPFIKYVS 593
+ + V
Sbjct: 460 NTYTMMVG 467
Score = 59.3 bits (142), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 81/400 (20%), Positives = 160/400 (40%), Gaps = 17/400 (4%)
Query: 117 ISKQLELSGVVFTHEMVLKVLKNLESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVGV 176
+ L+ G + ++V +VLKNL ++ A FF W ++ ++ +++ ++ +G
Sbjct: 132 VPAALDALGASVSPQLVAEVLKNLSNAGILALAFFRWAERQQGFVYTADSFHNLIEALGK 191
Query: 177 HGLVQEFWGLVDVMKKKGYGVASH----VRNKMTEKFEKEGLESDLEKLKGIFATGSID- 231
+ W LV+ M+ +G VR + KE +E+ EK+ G +
Sbjct: 192 IKQFRLVWSLVEAMRCRGLLSKDTFRLIVRRYARARKVKEAVET-FEKMAGFGLKADLSD 250
Query: 232 -NSIEKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRW 290
N + V S+ +V ++ +++R N F DL + V G +K L+ +
Sbjct: 251 YNWLIDVLSKSKQVKKAHAIFKEMKR-----NGRFVPDLKTYTVLMEGWGHEKDLLMLKS 305
Query: 291 AEES---GFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFS 347
+ ++ D +Y + S + D KV EM + G ++
Sbjct: 306 VYQEMLDAGLQPDVVAYGMLISSFCKSGKCDEAIKVFREMETNGCMPSPHVYCMLINGLG 365
Query: 348 ERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLT 407
+ EA+ +E + A V C ++ S + K+V R++G
Sbjct: 366 SEERLDEALKYFELSKASGFPMEVPTCNAVVGAYCRSSKFQHAF--KMVDEMRKSGIGPN 423
Query: 408 DAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMD 467
+ +L LI ++ E + + M + G N + + S + D A + +
Sbjct: 424 SRTYDIILHHLIKSQKIEEAYNVFQGMSKDGCEPQLNTYTMMVGMFCSNERVDVALKVWN 483
Query: 468 HMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEK 507
M+ G M+ +LI G C L++A FQ+M+++
Sbjct: 484 QMKEKGVLPCMHMFSALINGLCFENRLEEACAYFQEMLDR 523
>gi|115482834|ref|NP_001065010.1| Os10g0506000 [Oryza sativa Japonica Group]
gi|31432949|gb|AAP54520.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
gi|62733610|gb|AAX95727.1| hypothetical protein [Oryza sativa Japonica Group]
gi|113639619|dbj|BAF26924.1| Os10g0506000 [Oryza sativa Japonica Group]
gi|125575336|gb|EAZ16620.1| hypothetical protein OsJ_32092 [Oryza sativa Japonica Group]
Length = 507
Score = 76.3 bits (186), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 96/412 (23%), Positives = 167/412 (40%), Gaps = 19/412 (4%)
Query: 215 ESDLEKLKGIFATGSIDNSIEKV---ASRICKVVRSDIWGDDVERQLRDLNVTFSNDLV- 270
+ D E L +GS E++ A RI K++ D G + + L ++ SN LV
Sbjct: 84 DDDGENLSPGAGSGSRRRFFEELRLKADRIVKILLQDGPGFNTRQALDEMRPRVSNALVR 143
Query: 271 ----KFVVDKLGDE----PKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWK 322
KFVV G P+ A FF WAEE +H S YN + + + W+
Sbjct: 144 EVLLKFVVSIDGVNRARYPRLAYKFFLWAEEQEGYRHGTSMYNLILKIFAECGELKAMWR 203
Query: 323 VLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIV 382
+L++M KG + T ++ + + V+ + + +P N +L ++
Sbjct: 204 LLEDMTDKGLPVSSRTFHLLVCTSGRAGLRRRLVERFIKSSNFNYRPFRNSFNAILHTLL 263
Query: 383 VSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIAS 442
+Q L V + G+ N V++A + ++ + +K+L M + G
Sbjct: 264 TIEQYS--LIEWVHQKMIAEGHSPDVLTYNVVMRAKYMLRKLDQFHKLLDEMGKNGLAPD 321
Query: 443 SNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQ 502
+ + L K A +++M G + +LI G AG+L+ F
Sbjct: 322 LYTYNLLLHVLGKGDKPLAALNLLNYMSDVGCVPTVLHFTNLIDGLSRAGNLEACKYFFD 381
Query: 503 KMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLV 562
+MV K+G +++ Y + +A KF + + L P TY +I L +
Sbjct: 382 EMV-KKGCQPDVVCYTVMITGYVAAGEFDEAQKFFDDMLLRGQL-PNVYTYNSMICGLCI 439
Query: 563 QRGFKDALSLLCLMKDHGFPPFVDPFIKYVSK---SGTSDDAIAFLKGMTSK 611
F A SLL M+ G P + VS+ +G +A ++ MT+K
Sbjct: 440 VGEFDKACSLLKDMESRGCTPNFTVYSTLVSRLRNAGKDSEANNIIQYMTNK 491
Score = 63.2 bits (152), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 86/352 (24%), Positives = 144/352 (40%), Gaps = 33/352 (9%)
Query: 139 NLESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVA 198
N P A +FF W E+E R + YNL+L+I G ++ W L++ M KG V+
Sbjct: 157 NRARYPRLAYKFFLWAEEQEGYRHGTSMYNLILKIFAECGELKAMWRLLEDMTDKGLPVS 216
Query: 199 SHVRNKMTEKFEKEGLESDL-EKL--KGIFATGSIDNSIEKVASRICKVVRSDI--WGDD 253
S + + + GL L E+ F NS + + + + + W
Sbjct: 217 SRTFHLLVCTSGRAGLRRRLVERFIKSSNFNYRPFRNSFNAILHTLLTIEQYSLIEW--- 273
Query: 254 VERQLRDLNVTFSNDLVKF-VVDKLGDEPKKALIFFRWAEESG--FVKHDESSYNAMASV 310
V +++ + S D++ + VV + +K F + +E G + D +YN + V
Sbjct: 274 VHQKM--IAEGHSPDVLTYNVVMRAKYMLRKLDQFHKLLDEMGKNGLAPDLYTYNLLLHV 331
Query: 311 LGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSE------RNMVKEAVDLYEFAMA 364
LG+ D +L+ M G CV + F+ R EA + M
Sbjct: 332 LGKGDKPLAALNLLNYMSDVG-------CVPTVLHFTNLIDGLSRAGNLEACKYFFDEMV 384
Query: 365 CKN-KPSVNCCTFLLRKIVVSKQLD--MRLFSKVVRVFRENGNVLTDAMLNSVLKALISV 421
K +P V C T ++ V + + D + F ++ G + NS++ L V
Sbjct: 385 KKGCQPDVVCYTVMITGYVAAGEFDEAQKFFDDMLL----RGQLPNVYTYNSMICGLCIV 440
Query: 422 GRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASG 473
G + +LK ME G + + S + RL +AGK EAN + +M G
Sbjct: 441 GEFDKACSLLKDMESRGCTPNFTVYSTLVSRLRNAGKDSEANNIIQYMTNKG 492
>gi|147865347|emb|CAN84084.1| hypothetical protein VITISV_018999 [Vitis vinifera]
Length = 561
Score = 76.3 bits (186), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 93/394 (23%), Positives = 158/394 (40%), Gaps = 80/394 (20%)
Query: 212 EGLESDLEKLKGIFATGSIDNSIEKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVK 271
+G S EKL+G+F I+++ + +E L ++ + + D+V
Sbjct: 96 DGFLSPGEKLRGVF--------IQRLRGKAA-----------IELALTNVGIDLTIDIVS 136
Query: 272 FVVDKLGDEPKKALI-FFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSK 330
V ++ G+ +A++ FF WA + + D +YN + LGR I+ VL +M +
Sbjct: 137 EVXNR-GNLGGEAMVXFFNWAVKQPTIPKDVDTYNVIIKALGRRKFIEFXVXVLKDMHIQ 195
Query: 331 GYEMEMETCVKVLGRFSERNMVKEAVDLY----EFAMACKNKPSVNCCTFLLRKIVVSKQ 386
G ET V+ F + V +A++++ EF C + S+N LL+ +
Sbjct: 196 GISPNYETLSIVMDSFIKARQVSKAIEMFRNLEEFGGKCDTE-SLN---VLLQCLCQRSH 251
Query: 387 LD-MRLFSKVVRVFRENGNVLTDAM-LNSVLKALISVGRMGECNKILKAMEEGGFIASSN 444
+ LF ++ G + + M N ++ G++GE + LKAM GF +
Sbjct: 252 VGAANLFFNAMK-----GGIPFNCMTYNIIIGGWSKYGKIGEMERCLKAMVADGFSPNCL 306
Query: 445 MKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKM 504
S + L AG+ D+A E HME +G + CV
Sbjct: 307 TFSHLIEGLGRAGRIDDAVEVFHHMEETGC----------VPNACV-------------- 342
Query: 505 VEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQR 564
+ L++ + S R D C +N + + P TY +LI L R
Sbjct: 343 ------------YNALISNFIS-TRDFDECLKYYNFMVSSNCDPNMDTYTKLIVAFLKAR 389
Query: 565 GFKDALSLLCLMKDHGFPP-------FVDPFIKY 591
DAL +L M G P F++P +Y
Sbjct: 390 KVADALEMLDEMVGRGMIPTTGAITSFIEPLCQY 423
Score = 38.9 bits (89), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 74/400 (18%), Positives = 153/400 (38%), Gaps = 34/400 (8%)
Query: 125 GVVFTHEMVLKVLKNLESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFW 184
G+ T ++V +V + FFNW +++ + TYN++++ +G ++
Sbjct: 127 GIDLTIDIVSEVXNRGNLGGEAMVXFFNWAVKQPTIPKDVDTYNVIIKALGRRKFIEFXV 186
Query: 185 GLVDVMKKKGYGVASHVRNKMTEKFEKEGLES-------DLEKLKGIFATGSIDNSIEKV 237
++ M +G + + + F K S +LE+ G T S++ ++
Sbjct: 187 XVLKDMHIQGISPNYETLSIVMDSFIKARQVSKAIEMFRNLEEFGGKCDTESLNVLLQ-- 244
Query: 238 ASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVD------KLGDEPK--KALIFFR 289
C RS + ++ + F+ ++ K+G+ + KA++
Sbjct: 245 ----CLCQRSHVGAANLFFNAMKGGIPFNCMTYNIIIGGWSKYGKIGEMERCLKAMV--- 297
Query: 290 WAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSER 349
GF + +++ + LGR ID +V M G ++ F
Sbjct: 298 ---ADGF-SPNCLTFSHLIEGLGRAGRIDDAVEVFHHMEETGCVPNACVYNALISNFIST 353
Query: 350 NMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLD--MRLFSKVVRVFRENGNVLT 407
E + Y F ++ P+++ T L+ + ++++ + + ++V G + T
Sbjct: 354 RDFDECLKYYNFMVSSNCDPNMDTYTKLIVAFLKARKVADALEMLDEMV----GRGMIPT 409
Query: 408 DAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMD 467
+ S ++ L G I K + G S + + RLS GK D
Sbjct: 410 TGAITSFIEPLCQYGPPHAAMMIYKKARKVGCRISLSAYKLLLMRLSRFGKCGMLLNLWD 469
Query: 468 HMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEK 507
M+ SG +++ +I G C G LD A ++ + K
Sbjct: 470 EMQESGYSSDTEVYEYVINGLCNIGQLDTAVLVMEESLXK 509
>gi|297827231|ref|XP_002881498.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297327337|gb|EFH57757.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 756
Score = 76.3 bits (186), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 86/406 (21%), Positives = 165/406 (40%), Gaps = 49/406 (12%)
Query: 216 SDLEKLKGIFATGSIDNSIEKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVD 275
++ L+ F G N EK+ IC+++ + W ++ +RDL + + LV V+
Sbjct: 66 TETRPLRERFQRGKRQNH-EKLEDTICRMMDNRAWTTRLQNSIRDLVPEWDHSLVYNVLH 124
Query: 276 KLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEME 335
+ + AL FFRW E SG ++HD ++ M +LG ++ +L +M KG +
Sbjct: 125 G-AKKLEHALQFFRWTERSGLIRHDRDTHMKMIKMLGEVQKLNHARCILLDMPEKGVPWD 183
Query: 336 METCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKV 395
+ V ++ + + +V+E+V K+
Sbjct: 184 EDMFVVLIESYGKAGIVQESV-------------------------------------KI 206
Query: 396 VRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSS 455
+ ++ G T N++ K ++ GR + M G + + + + +
Sbjct: 207 FQKMKDLGVERTIKSYNTLFKVILRRGRYMMAKRYFNKMVSEGVEPTRHTYNLMLWGFFL 266
Query: 456 AGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGY 515
+ + + A F D M+ G + ++I G+C +D+A F VE +G +
Sbjct: 267 SLRLETALRFFDDMKTRGISPDAVTYNTIINGYCRFKKMDEAEKLF---VEMKGNNSEPS 323
Query: 516 AI--DLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLL 573
+ ++ Y S +R D + +R + ++P TTY L+ L +A ++L
Sbjct: 324 VVTYTTMIKGYLSVDRVDDGLRIFEE-MRSFGIEPNATTYSTLLPGLCDVGKMVEAKNIL 382
Query: 574 -CLMKDHGFPPFVDPFIKYV---SKSGTSDDAIAFLKGMTSKRFPS 615
+M H P F+K + SK+G A LK M + P+
Sbjct: 383 KNMMAKHIAPKDNSIFLKLLVSQSKAGDMAAATEVLKAMATLNVPA 428
>gi|255562047|ref|XP_002522032.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223538836|gb|EEF40436.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 451
Score = 76.3 bits (186), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 83/397 (20%), Positives = 160/397 (40%), Gaps = 23/397 (5%)
Query: 224 IFATGSIDNSIEK---VASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDE 280
+ A+ S +N+ + + I +VR D + ER L LN +++LV V+
Sbjct: 27 VLASTSTNNTKDAYFALIHHITNIVRRDFYP---ERTLNKLNAPVTSELVFRVLRACSRS 83
Query: 281 PKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKG--YEMEMET 338
P ++L FF W+ + Y + +L + WK++ +M+ + + + ET
Sbjct: 84 PTESLRFFNWSR--AYYTPTSIEYEELIKILAKSKRYSSMWKLITQMKDQNPQFSISSET 141
Query: 339 CVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFS---KV 395
++ + ++ +AV+++ + + +V+ LL + +++LF +
Sbjct: 142 VRSIIEEYGRSGLIDQAVEVFNQCNSLNCEQNVDIYNSLLFALC-----EVKLFHGAYAL 196
Query: 396 VRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSS 455
VR G + ++ S G+ E L+ M + GF + + L +
Sbjct: 197 VRRLIRKGLAPNKTTYSVLVNGWCSNGKFKEAQLFLEEMSKKGFNPPVRGRDLLIEGLLN 256
Query: 456 AGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGY 515
AG + A E + M G + LI+ C +G++D D + + K G
Sbjct: 257 AGYFESAKEMVFKMSKEGFVPDVNTFNCLIEAICNSGEVDFCVDMYYSL-RKLGFCPDIN 315
Query: 516 AIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCL 575
+ +L+ + +A K ++N + E KP+ Y +IK + + F DA
Sbjct: 316 SYKILIPAVSKVGKIDEAFKLLNNSI-EDGHKPFPGLYAPIIKGMCRRGQFDDAFCFFGE 374
Query: 576 MKDHGFP---PFVDPFIKYVSKSGTSDDAIAFLKGMT 609
MK G P P I + G +A +L MT
Sbjct: 375 MKVKGHPPNRPVYTMLITMCGRGGKYVEAANYLVEMT 411
Score = 43.1 bits (100), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 43/88 (48%), Gaps = 4/88 (4%)
Query: 129 THEMVLKVLKNLESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLVD 188
T E+V +VL+ SP E+ RFFNW + +S Y +++I+ W L+
Sbjct: 69 TSELVFRVLRACSRSPTESLRFFNW--SRAYYTPTSIEYEELIKILAKSKRYSSMWKLIT 126
Query: 189 VMKKKG--YGVASHVRNKMTEKFEKEGL 214
MK + + ++S + E++ + GL
Sbjct: 127 QMKDQNPQFSISSETVRSIIEEYGRSGL 154
>gi|356538835|ref|XP_003537906.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g15980-like [Glycine max]
Length = 487
Score = 76.3 bits (186), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 92/424 (21%), Positives = 155/424 (36%), Gaps = 95/424 (22%)
Query: 277 LGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEM 336
+ ++P+ AL FF W + H+ +SY+++ +L R + ++ ++ +
Sbjct: 74 IKNKPQLALRFFLWTKSKSLCNHNLASYSSIIHLLARARLSSHAYDLIRTAIRASHQNDE 133
Query: 337 ETCVKVLGRFSER--NMVKEAVDLYE-----------FAMACKNK--------------- 368
E C RF+ R N+ + V Y AC +
Sbjct: 134 ENC-----RFNSRPLNLFETLVKTYRDSGSAPFVFDLLIKACLDSKKLDPSIEIVRMLLS 188
Query: 369 ----PSVNCCTFLLRKIVVSKQLD---------MRL------FSKVVRVFRENGNVLT-- 407
P V+ L+ ++ S+ +D RL SK FR NV T
Sbjct: 189 RGISPKVSTLNSLISRVCKSRGVDEGYAIYREFFRLDEENNEISKRGSGFRVTPNVHTYN 248
Query: 408 --------DAMLNSVLKALISV---------------------GRMGECNKILKAMEEGG 438
D ++ V K I + GRMG+ K+ + +
Sbjct: 249 DLMLCCYQDGLVERVEKIWIEMKCNYKPNAYSYSVLMATFCDEGRMGDAEKLWEELRSEK 308
Query: 439 FIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAA 498
+ I + G A EF M +G + L+KG+C GD+D A
Sbjct: 309 IEPDVVSYNTIIGGFCTIGDVGRAEEFFREMAVAGVGTTASTYEHLVKGYCNIGDVDSAV 368
Query: 499 DCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIK 558
++ M + A +D+++ C K R ++ +FV V ++DL P +YE LIK
Sbjct: 369 LVYKDMARSDLRPDAS-TLDVMIRLLCDKGRVRESLEFVRCAVGKFDLIPMEKSYEALIK 427
Query: 559 NLLVQRGFKDALSLLCLMKDHGFPP-------FVDPFIKYVSKSGTSDDAIAFLKGMTSK 611
L ++AL + M GF P FVD ++++ G + A A K M
Sbjct: 428 GLCFDGRMEEALKVQAEMVGKGFQPNSEIYGAFVDGYVRH----GNEEMAEALRKEMLQN 483
Query: 612 RFPS 615
+ S
Sbjct: 484 QMQS 487
>gi|297741319|emb|CBI32450.3| unnamed protein product [Vitis vinifera]
Length = 851
Score = 76.3 bits (186), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 73/284 (25%), Positives = 117/284 (41%), Gaps = 10/284 (3%)
Query: 303 SYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFA 362
SYN + + L RE + W++L+EM KG+ + T +L + + +A+ ++
Sbjct: 82 SYNVIINGLCREGSMKEAWEILEEMGYKGFTPDEVTYNTLLNGYCKEGNFHQALVIHAEM 141
Query: 363 MACKNKPSVNCCTFLLRKIVVSKQLD--MRLFSKV-VRVFRENGNVLTDAMLNSVLKALI 419
+ PSV T L+ + ++ L+ M F ++ +R R N T +++
Sbjct: 142 VRNGVSPSVVTYTALINSMCKARNLNRAMEFFDQMRIRGLRPNERTYT-----TLIDGFS 196
Query: 420 SVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDK 479
G + E +IL M E GF S + + +EA + M G
Sbjct: 197 RQGLLNEAYRILNEMTESGFSPSVVTYNAFIHGHCVLERMEEALGVVQEMVEKGLAPDVV 256
Query: 480 MWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHN 539
+ ++I G C G+LD+A Q+MVEK G S L+ C R +AC
Sbjct: 257 SYSTIISGFCRKGELDRAFQMKQEMVEK-GVSPDAVTYSSLIQGLCEMRRLTEACDLSQE 315
Query: 540 CVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPP 583
+ + L P TY LI V+ AL L M GF P
Sbjct: 316 ML-DMGLPPDEFTYTTLINAYCVEGDLNKALHLHDEMIHKGFLP 358
Score = 58.9 bits (141), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 89/371 (23%), Positives = 140/371 (37%), Gaps = 19/371 (5%)
Query: 280 EPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETC 339
E +K L F E +G + + +YN + + ID + +L M SKG + + +
Sbjct: 25 ELQKGLGCFGEMERNGCLP-NVVTYNTLIDAYCKMGRIDEAFGLLKSMSSKGMQPNLISY 83
Query: 340 VKVLGRFSERNMVKEAVDLYEFAMACKN-KPSVNCCTFLLRKIVVSKQLDMRLF--SKVV 396
++ +KEA ++ E M K P LL L +++V
Sbjct: 84 NVIINGLCREGSMKEAWEILE-EMGYKGFTPDEVTYNTLLNGYCKEGNFHQALVIHAEMV 142
Query: 397 RVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSA 456
R V A++NS+ KA + + M G + + + S
Sbjct: 143 RNGVSPSVVTYTALINSMCKAR----NLNRAMEFFDQMRIRGLRPNERTYTTLIDGFSRQ 198
Query: 457 GKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYA 516
G +EA ++ M SG + + I GHCV +++A Q+MVEK G + +
Sbjct: 199 GLLNEAYRILNEMTESGFSPSVVTYNAFIHGHCVLERMEEALGVVQEMVEK-GLAPDVVS 257
Query: 517 IDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLM 576
+++ +C K A + V E + P TY LI+ L R +A L M
Sbjct: 258 YSTIISGFCRKGELDRAFQMKQEMV-EKGVSPDAVTYSSLIQGLCEMRRLTEACDLSQEM 316
Query: 577 KDHGFPPFVDPF-----IKYVSKSGTSDDAIAFLKGMTSKRF-PSMSVVLCLFAAFFQAR 630
D G PP D F I G + A+ M K F P L +
Sbjct: 317 LDMGLPP--DEFTYTTLINAYCVEGDLNKALHLHDEMIHKGFLPDAVTYSVLINGLNKQA 374
Query: 631 RHSEAQDLLSK 641
R EA+ LL K
Sbjct: 375 RTREAKRLLFK 385
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 56/226 (24%), Positives = 96/226 (42%), Gaps = 8/226 (3%)
Query: 369 PSVNCCTFLLRKIVVSKQLDMRL--FSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGE 426
P+V L+R +L L F ++ R NG + N+++ A +GR+ E
Sbjct: 8 PNVYTYNILIRGFCSVGELQKGLGCFGEMER----NGCLPNVVTYNTLIDAYCKMGRIDE 63
Query: 427 CNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIK 486
+LK+M G + + I L G EA E ++ M G + + +L+
Sbjct: 64 AFGLLKSMSSKGMQPNLISYNVIINGLCREGSMKEAWEILEEMGYKGFTPDEVTYNTLLN 123
Query: 487 GHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDL 546
G+C G+ +A +MV + G S + L+N+ C K R ++ + +R L
Sbjct: 124 GYCKEGNFHQALVIHAEMV-RNGVSPSVVTYTALINSMC-KARNLNRAMEFFDQMRIRGL 181
Query: 547 KPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPFIKYV 592
+P TY LI Q +A +L M + GF P V + ++
Sbjct: 182 RPNERTYTTLIDGFSRQGLLNEAYRILNEMTESGFSPSVVTYNAFI 227
Score = 45.4 bits (106), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 50/221 (22%), Positives = 86/221 (38%), Gaps = 8/221 (3%)
Query: 412 NSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEA 471
N +++ SVG + + ME G + + + + G+ DEA + M +
Sbjct: 14 NILIRGFCSVGELQKGLGCFGEMERNGCLPNVVTYNTLIDAYCKMGRIDEAFGLLKSMSS 73
Query: 472 SGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAI 531
G + +I G C G + +A + ++M K G + + L+N YC +
Sbjct: 74 KGMQPNLISYNVIINGLCREGSMKEAWEILEEMGYK-GFTPDEVTYNTLLNGYCKEGNFH 132
Query: 532 DACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPFIKY 591
A +H + + P TY LI ++ R A+ M+ G P +
Sbjct: 133 QAL-VIHAEMVRNGVSPSVVTYTALINSMCKARNLNRAMEFFDQMRIRGLRPNERTYTTL 191
Query: 592 V---SKSGTSDDAIAFLKGMTSKRFPSMSVVLCLFAAFFQA 629
+ S+ G ++A L MT F S SVV + AF
Sbjct: 192 IDGFSRQGLLNEAYRILNEMTESGF-SPSVV--TYNAFIHG 229
Score = 41.6 bits (96), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 55/237 (23%), Positives = 92/237 (38%), Gaps = 19/237 (8%)
Query: 300 DESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLY 359
D SY+ + S R+ +DR +++ EM KG + T ++ E + EA DL
Sbjct: 254 DVVSYSTIISGFCRKGELDRAFQMKQEMVEKGVSPDAVTYSSLIQGLCEMRRLTEACDLS 313
Query: 360 EFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVL-KAL 418
+ + P T L+ V L+ L + + L DA+ SVL L
Sbjct: 314 QEMLDMGLPPDEFTYTTLINAYCVEGDLNKALHLHDEMIHK---GFLPDAVTYSVLINGL 370
Query: 419 ISVGRMGECNKILKAMEEGGFIAS-----------SNMKSKIAFRLSSA----GKKDEAN 463
R E ++L + + S SN++ K L G EA+
Sbjct: 371 NKQARTREAKRLLFKLIYEESVPSDVTYDTLIENCSNIEFKSVVALIKGFCMKGLMHEAD 430
Query: 464 EFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLL 520
+ M G+ ++ +I GHC G+L KA + +++M+ H I L+
Sbjct: 431 RVFESMVERNHKPGEAVYNVIIHGHCRGGNLPKAFNLYKEMIHSGFVPHTVTVITLI 487
>gi|293330959|ref|NP_001169662.1| uncharacterized protein LOC100383543 [Zea mays]
gi|224030695|gb|ACN34423.1| unknown [Zea mays]
gi|414870691|tpg|DAA49248.1| TPA: hypothetical protein ZEAMMB73_502001 [Zea mays]
Length = 756
Score = 75.9 bits (185), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 82/354 (23%), Positives = 143/354 (40%), Gaps = 45/354 (12%)
Query: 300 DESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLY 359
D +YN + + L + +D ++++M +G + T ++ +N ++EA+DL
Sbjct: 334 DVFTYNTVINCLSKNGELDEAKGIVNQMVDRGCLPDTTTFNTLIVALCSQNRLEEALDLA 393
Query: 360 EFAMACKNKPSVNCCTFLLRKI--VVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKA 417
P V L+ + V L +RLF ++ + +G + N ++
Sbjct: 394 RELTVKGLSPDVYTFNILINALCKVGDPHLGIRLFEEM----KSSGCAPDEVTYNILIDH 449
Query: 418 LISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVG 477
L S+G++ +LK ME G S+ + I L + +EA E D M+A G
Sbjct: 450 LCSMGKLVNALDLLKEMESNGCPRSTVTYNTIIDALCKQMRIEEAEEVFDQMDAHGISRS 509
Query: 478 DKMWVSLIKGHCVAGDLDKAADCFQKMVEK-----------------------------E 508
+ +LI G C A +D A + ++MV++ E
Sbjct: 510 AVTFNTLIDGLCKAKRIDDATELIEQMVKEGLQPSNITYNSILTHYCKQGDLKKAADILE 569
Query: 509 GTSHAGYAIDL-----LVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQ 563
+ G+ ID+ L+N C R A K + +R ++P Y +I++L +
Sbjct: 570 TMTANGFEIDVVTYGTLINGLCKAGRTQVALKLLRG-MRIKGIRPTPKAYNPVIQSLFRR 628
Query: 564 RGFKDALSLLCLMKDHGFPP----FVDPFIKYVSKSGTSDDAIAFLKGMTSKRF 613
+DALSL M + G PP + F G +A FL M +K F
Sbjct: 629 NNLRDALSLFREMTEVGEPPDALTYKIVFRGLCRGGGPIKEAFDFLVEMVNKGF 682
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 103/501 (20%), Positives = 194/501 (38%), Gaps = 57/501 (11%)
Query: 141 ESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASH 200
++ P+ A + N L +E S Y +++ +G G GLV M+++G+ +
Sbjct: 66 QADPEAALQMLNSALAREDFAPSRAVYEEIIQKLGTAGAFDLMEGLVREMRREGHEAGAG 125
Query: 201 VRNKMTEKFEKEGLESDLEKLK-------GIFATGSIDNSIEKV---ASRICKVVRSDIW 250
V E + + D L G+ A ++ N + V SR+ K++ S ++
Sbjct: 126 VVRSFVESYARLRRFDDAVDLVRNQLNTFGVQADTAVYNHLLNVLAEGSRM-KLLES-VY 183
Query: 251 GDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASV 310
+ +R ++ VT N L+K + + + A++ S V DE+++ +
Sbjct: 184 NEMTDRGIQPDVVTL-NTLIKALCR--AHQVRTAVLMLEEMS-SHAVAPDETTFTTLMQG 239
Query: 311 LGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPS 370
E I+ +V +M MET G R V ++ Y CK
Sbjct: 240 FIEEGSIEAALRVKTKM--------MET-----GCSPTRVTVNVLINGY-----CKMGRV 281
Query: 371 VNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNV-----LTDAML-----------NSV 414
+ ++ ++I + D ++ V +NG+V + D ML N+V
Sbjct: 282 EDALGYIQKEIADGFEPDQVTYNTFVHCLCQNGHVSHALKVMDLMLQEGHDPDVFTYNTV 341
Query: 415 LKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGS 474
+ L G + E I+ M + G + + + + L S + +EA + + G
Sbjct: 342 INCLSKNGELDEAKGIVNQMVDRGCLPDTTTFNTLIVALCSQNRLEEALDLARELTVKGL 401
Query: 475 DVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDAC 534
+ LI C GD F++M + G + ++L++ CS + ++A
Sbjct: 402 SPDVYTFNILINALCKVGDPHLGIRLFEEM-KSSGCAPDEVTYNILIDHLCSMGKLVNAL 460
Query: 535 KFVHNCVREYDLKPWHT-TYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPF---IK 590
+ E + P T TY +I L Q ++A + M HG F I
Sbjct: 461 DLLKE--MESNGCPRSTVTYNTIIDALCKQMRIEEAEEVFDQMDAHGISRSAVTFNTLID 518
Query: 591 YVSKSGTSDDAIAFLKGMTSK 611
+ K+ DDA ++ M +
Sbjct: 519 GLCKAKRIDDATELIEQMVKE 539
>gi|255660918|gb|ACU25628.1| pentatricopeptide repeat-containing protein [Xeroaloysia
ovatifolia]
Length = 484
Score = 75.9 bits (185), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 90/391 (23%), Positives = 162/391 (41%), Gaps = 49/391 (12%)
Query: 258 LRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCI 317
+R+L +F ++LV V+ + AL FFRW E S +H+ ++ + +LGR +
Sbjct: 3 IRNLVPSFDHELVYNVLHG-SKTSEHALQFFRWVERSNLFEHNRETHLKIIEILGRASKL 61
Query: 318 DRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFL 377
+ +L +M KG E + + V ++ + + +V+E+V
Sbjct: 62 NHARCILLDMPKKGLEWDEDMWVLMIDSYGKAGIVQESV--------------------- 100
Query: 378 LRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEG 437
+LF K+ E G T +++ K ++ GR + M
Sbjct: 101 ------------KLFQKM----EELGVERTTKSYDTLFKVILRRGRFMMAKRYFNKMLSE 144
Query: 438 GFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKA 497
G + + + + + +GK + AN F D M++ + ++I G+ +D+A
Sbjct: 145 GIEPTRHTFNVMIWGFFLSGKVETANRFFDDMKSREISPDVITYNTMINGYYRVKKMDEA 204
Query: 498 ADCFQKMVEKEGTSHAGYAI--DLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEE 555
F VE +G + + L+ Y S ++ DA + V ++ Y +KP TY
Sbjct: 205 EKYF---VEMKGRNIEPTVVTYTTLIKGYVSVDQVDDALRLVEE-MKGYGIKPNAITYST 260
Query: 556 LIKNLLVQRGFKDALSLLCLMKDHGFPPFVDP-FIKYVS---KSGTSDDAIAFLKGMTSK 611
L+ L +A S+L M D P + F++ +S K+G D A LK M
Sbjct: 261 LLPGLCNAEKMSEARSVLKEMVDKYIAPTDNSIFMRLISGQCKTGNLDAAADVLKAMIRL 320
Query: 612 RFPSMSVVL-CLFAAFFQARRHSEAQDLLSK 641
P+ + L F +A +H +A LL K
Sbjct: 321 SVPTEAGHYGVLIENFCKADQHDKAVKLLDK 351
Score = 53.9 bits (128), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 47/214 (21%), Positives = 98/214 (45%), Gaps = 11/214 (5%)
Query: 412 NSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHM-E 470
+++K +SV ++ + ++++ M+ G ++ S + L +A K EA + M +
Sbjct: 224 TTLIKGYVSVDQVDDALRLVEEMKGYGIKPNAITYSTLLPGLCNAEKMSEARSVLKEMVD 283
Query: 471 ASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRA 530
+ + +++ LI G C G+LD AAD + M+ + AG+ +L+ +C ++
Sbjct: 284 KYIAPTDNSIFMRLISGQCKTGNLDAAADVLKAMIRLSVPTEAGH-YGVLIENFCKADQH 342
Query: 531 IDACKFVHNCV-REYDLKPWHT------TYEELIKNLLVQRGFKDALSLLCLMKDHGF-- 581
A K + + ++ L+P T Y +I+ L A +L+ + G
Sbjct: 343 DKAVKLLDKLIEKDIILRPQSTLHMEPSAYNPMIEYLCNNGQTAKAEALVRQLLKLGVQD 402
Query: 582 PPFVDPFIKYVSKSGTSDDAIAFLKGMTSKRFPS 615
P ++ ++ S+ G+ D A LK M ++ S
Sbjct: 403 PTALNTLVRGHSQEGSPDSAFELLKIMLRRKVDS 436
>gi|15238810|ref|NP_197340.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|223635760|sp|Q94JX6.2|PP391_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At5g18390, mitochondrial; Flags: Precursor
gi|332005166|gb|AED92549.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 459
Score = 75.9 bits (185), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 90/392 (22%), Positives = 150/392 (38%), Gaps = 50/392 (12%)
Query: 239 SRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVK 298
+ + +VR +I ER L L + +++ V V+ +L FF WA +
Sbjct: 52 NHVVNIVRREI---HPERSLNSLRLPVTSEFVFRVLRATSRSSNDSLRFFNWARSNPSYT 108
Query: 299 HDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDL 358
Y +A L + WK+L +M+ ++ ET ++ ++ + V +AV+L
Sbjct: 109 PTSMEYEELAKSLASHKKYESMWKILKQMKDLSLDISGETLCFIIEQYGKNGHVDQAVEL 168
Query: 359 YEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKAL 418
+ P C + V V+ NS+L AL
Sbjct: 169 F------NGVPKTLGC------------------QQTVDVY------------NSLLHAL 192
Query: 419 ISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGD 478
V +++ M G + + SAGK EA EF+D M G +
Sbjct: 193 CDVKMFHGAYALIRRMIRKGLKPDKRTYAILVNGWCSAGKMKEAQEFLDEMSRRGFNPPA 252
Query: 479 KMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVH 538
+ LI+G AG L+ A + KM K G ++L+ SK+ ++ C ++
Sbjct: 253 RGRDLLIEGLLNAGYLESAKEMVSKMT-KGGFVPDIQTFNILIEA-ISKSGEVEFCIEMY 310
Query: 539 NCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLL--CLMKDH-GFPPFVDPFIKYVSKS 595
+ L TY+ LI + +A LL C+ H FP P IK + ++
Sbjct: 311 YTACKLGLCVDIDTYKTLIPAVSKIGKIDEAFRLLNNCVEDGHKPFPSLYAPIIKGMCRN 370
Query: 596 GTSDDAIAFLKGMTSKRFP------SMSVVLC 621
G DDA +F M K P +M + +C
Sbjct: 371 GMFDDAFSFFSDMKVKAHPPNRPVYTMLITMC 402
Score = 40.8 bits (94), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 24/108 (22%), Positives = 48/108 (44%), Gaps = 1/108 (0%)
Query: 129 THEMVLKVLKNLESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLVD 188
T E V +VL+ S +++ RFFNW S +S Y + + + H + W ++
Sbjct: 76 TSEFVFRVLRATSRSSNDSLRFFNWARSNPSYTPTSMEYEELAKSLASHKKYESMWKILK 135
Query: 189 VMKKKGYGVASHVRNKMTEKFEKEG-LESDLEKLKGIFATGSIDNSIE 235
MK ++ + E++ K G ++ +E G+ T +++
Sbjct: 136 QMKDLSLDISGETLCFIIEQYGKNGHVDQAVELFNGVPKTLGCQQTVD 183
>gi|414872432|tpg|DAA50989.1| TPA: hypothetical protein ZEAMMB73_390723 [Zea mays]
Length = 604
Score = 75.5 bits (184), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 102/431 (23%), Positives = 180/431 (41%), Gaps = 40/431 (9%)
Query: 232 NSIEKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDK-LGDEPKKALIFFRW 290
+S+ + R ++++ WG D E+ L L + + LV+ V+ +G K + FFRW
Sbjct: 22 HSVRVLDERFIRILKIFKWGPDAEKALEVLMLRVDHWLVREVMKTDVGVNVK--MQFFRW 79
Query: 291 AEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGY----EMEMETCVKVLGRF 346
A + +HD S+Y A+ L + WK++ EM E+ V++LG
Sbjct: 80 AAKRRNYEHDTSTYMALIHCLEVVEQYGEMWKMIQEMVRNPICVVTPTELSDVVRMLG-- 137
Query: 347 SERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRE---NG 403
MV++A+ ++ K +P ++ ++ Q + KV +++ E G
Sbjct: 138 -NAKMVRQAITIFYQIKTRKCQPIAQAYNSMIIMLMHEGQ-----YEKVHQLYNEMSTEG 191
Query: 404 NVLTDAMLNSVL-KALISVGRMGECNKILKAMEEGGFIASSNMKSKIA---FRLSSAGKK 459
+ D + S L A +GR ++L M+E G ++ + + + F+ + A
Sbjct: 192 HCFPDTVTYSALISAFCKLGRRDSAIQLLNEMKEIGMQPTTKIYTMLIALFFKFNDAHGA 251
Query: 460 DEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDL 519
E M H + DV + LI+G AG +D+A F +M ++EG ++
Sbjct: 252 LSLFEEMRH-QYCRPDVFT--YTELIRGLGKAGRIDEAYHFFCEM-QREGCRPDTVFMNN 307
Query: 520 LVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRG-FKDALSLLCLMKD 578
++N R DA K + P TY +IK L + + S MK+
Sbjct: 308 MINFLGKAGRLDDAMKLFQE-METLRCIPSVVTYNTIIKALFESKSRASEVPSWFERMKE 366
Query: 579 HGFPP-------FVDPFIKYVSKSGTSDDAIAFLKGMTSKRFPSMSVVLC-LFAAFFQAR 630
G P +D F K+ + A+ L+ M K FP C L A +A+
Sbjct: 367 SGISPSSFTYSILIDGF----CKTNRMEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAK 422
Query: 631 RHSEAQDLLSK 641
R+ A +L +
Sbjct: 423 RYDLACELFQE 433
Score = 52.8 bits (125), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 105/561 (18%), Positives = 213/561 (37%), Gaps = 87/561 (15%)
Query: 116 DISKQLELSGVVFTHEMVLKVLKNLESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVG 175
D K LE+ + H +V +V+K + + +FF W ++ + + TY ++ +
Sbjct: 43 DAEKALEVLMLRVDHWLVREVMKT-DVGVNVKMQFFRWAAKRRNYEHDTSTYMALIHCLE 101
Query: 176 VHGLVQEFWGLVDVMKK---------------KGYGVASHVRNKMTEKFEKEGL------ 214
V E W ++ M + + G A VR +T ++ +
Sbjct: 102 VVEQYGEMWKMIQEMVRNPICVVTPTELSDVVRMLGNAKMVRQAITIFYQIKTRKCQPIA 161
Query: 215 ------------ESDLEKLKGIFATGSIDN-------SIEKVASRICKVVRSDIWGDDVE 255
E EK+ ++ S + + + S CK+ R
Sbjct: 162 QAYNSMIIMLMHEGQYEKVHQLYNEMSTEGHCFPDTVTYSALISAFCKLGR--------- 212
Query: 256 RQLRDLNVTFSNDLVKFVVDKLGDEPKKAL------IFFRWAEESG-----------FVK 298
RD + N++ ++G +P + +FF++ + G + +
Sbjct: 213 ---RDSAIQLLNEM-----KEIGMQPTTKIYTMLIALFFKFNDAHGALSLFEEMRHQYCR 264
Query: 299 HDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEME---METCVKVLGRFSERNMVKEA 355
D +Y + LG+ ID + EM+ +G + M + LG+ + +A
Sbjct: 265 PDVFTYTELIRGLGKAGRIDEAYHFFCEMQREGCRPDTVFMNNMINFLGKAGR---LDDA 321
Query: 356 VDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVL 415
+ L++ + PSV +++ + SK + S R+ +E+G + + ++
Sbjct: 322 MKLFQEMETLRCIPSVVTYNTIIKALFESKSRASEVPSWFERM-KESGISPSSFTYSILI 380
Query: 416 KALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSD 475
RM + +L+ M+E GF + L A + D A E ++ +
Sbjct: 381 DGFCKTNRMEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDLACELFQELKENCGS 440
Query: 476 VGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACK 535
+++ +IK AG LD A + F +M K G + YA + L++ ++ +D
Sbjct: 441 SSARVYAVMIKHLGKAGRLDDAINMFDEM-NKLGCAPDVYAYNALMSGL-ARTGMLDEAL 498
Query: 536 FVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFV---DPFIKYV 592
++E+ P +Y ++ L G A+ +L MK P V + + +
Sbjct: 499 STMRRMQEHGCIPDINSYNIILNGLAKTGGPHRAMEMLSNMKQSTVRPDVVSYNTVLGAL 558
Query: 593 SKSGTSDDAIAFLKGMTSKRF 613
S +G ++A +K M + F
Sbjct: 559 SHAGMFEEASKLMKEMNTLGF 579
>gi|224068054|ref|XP_002302657.1| predicted protein [Populus trichocarpa]
gi|222844383|gb|EEE81930.1| predicted protein [Populus trichocarpa]
Length = 602
Score = 75.5 bits (184), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 85/319 (26%), Positives = 129/319 (40%), Gaps = 47/319 (14%)
Query: 231 DNSIEKVASRICKVVR------SDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKA 284
DN +++ AS + KV R S + +E L++ V N L + V+++ GD A
Sbjct: 41 DNKVDEFASDVEKVYRLLRKFHSRV--PKLELALQESGVVLRNGLTERVLNRCGDAGILA 98
Query: 285 LIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEM-RSKGYEMEMETCVKVL 343
FF WA + +H +Y AM VL + W +L+EM R + E V V+
Sbjct: 99 YKFFVWASKQPCYRHCYENYKAMIKVLSKMKQFGAVWALLEEMRRDNSVLITSEVFVVVM 158
Query: 344 GRFSERNMVKEAV-------------DLYEFA----MACKN-----------------KP 369
RF+ MV +A+ D Y F CKN P
Sbjct: 159 RRFASSRMVNKAIEVLDEMPKYGCEPDEYVFGCLLDALCKNGSVKEAASLFEDMRVRFSP 218
Query: 370 SVNCCTFLLRKIVVSKQLDMRLFSKVVRV-FRENGNVLTDAMLNSVLKALISVGRMGECN 428
S+ T LL +L L +K V V RE G + N++L + G+MG+
Sbjct: 219 SLKHFTCLLYGWCKEGKL---LEAKHVLVQMREAGFEPDIVVYNNLLSGYATAGKMGDAF 275
Query: 429 KILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGH 488
+LK + G ++ + + L K DEA ME SG D + +L+ G
Sbjct: 276 DLLKEIRRKGCDPNATSYTILIQALCGQEKMDEAMRVFVEMERSGCDADVVTYTALVSGF 335
Query: 489 CVAGDLDKAADCFQKMVEK 507
C +DK Q M++K
Sbjct: 336 CKWRMIDKGYQILQSMIQK 354
Score = 43.9 bits (102), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 88/459 (19%), Positives = 172/459 (37%), Gaps = 76/459 (16%)
Query: 99 SDFTVVSDIFYKF-SDVNDISKQLELSGVVFTHEMVLKVLKNLESSPDEARRFFNWVLEK 157
SD V + KF S V + L+ SGVV + + +VL + A +FF W ++
Sbjct: 49 SDVEKVYRLLRKFHSRVPKLELALQESGVVLRNGLTERVLNRCGDAGILAYKFFVWASKQ 108
Query: 158 ESERLSSKTYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGV--------------ASHVRN 203
R + Y M++++ W L++ M++ + +S + N
Sbjct: 109 PCYRHCYENYKAMIKVLSKMKQFGAVWALLEEMRRDNSVLITSEVFVVVMRRFASSRMVN 168
Query: 204 KMTE---KFEKEGLESDLEKLKGIFATGSIDNSIEKVASRICKVVRSDIWGDDVERQLRD 260
K E + K G E D E + G N K A+ + D
Sbjct: 169 KAIEVLDEMPKYGCEPD-EYVFGCLLDALCKNGSVKEAASL----------------FED 211
Query: 261 LNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRF 320
+ V FS L F + + W +E ++
Sbjct: 212 MRVRFSPSLKHFTC-----------LLYGWCKEGKLLEAKH------------------- 241
Query: 321 WKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRK 380
VL +MR G+E ++ +L ++ + +A DL + P+ T L++
Sbjct: 242 --VLVQMREAGFEPDIVVYNNLLSGYATAGKMGDAFDLLKEIRRKGCDPNATSYTILIQA 299
Query: 381 IVVSKQLD--MRLFSKVVRVFRENGNVLTDAMLNSVLK-ALISVGRMGECNKILKAMEEG 437
+ +++D MR+F ++ R + V A+++ K +I G +IL++M +
Sbjct: 300 LCGQEKMDEAMRVFVEMERSGCDADVVTYTALVSGFCKWRMIDKG-----YQILQSMIQK 354
Query: 438 GFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKA 497
G + + + + +E E M M+ G ++ +I+ C G+++
Sbjct: 355 GHMPNQLTYLHLMLAHEKKEELEECKELMGEMQKIGCIPDLSIYNVVIRLACKLGEVNAG 414
Query: 498 ADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKF 536
D + +M E G S +++N + ++AC++
Sbjct: 415 VDAWNEM-EVSGLSPGLDTFVIMINGFLGHGYLVEACQY 452
>gi|356508736|ref|XP_003523110.1| PREDICTED: pentatricopeptide repeat-containing protein At5g42310,
mitochondrial-like [Glycine max]
Length = 680
Score = 75.5 bits (184), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 108/523 (20%), Positives = 209/523 (39%), Gaps = 49/523 (9%)
Query: 121 LELSGVVFTHEMVLKVLKNLESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLV 180
L+ + F++E++ +L N + + + + L + + L+ TYN ++ +G V
Sbjct: 129 LQKHNLCFSYELLYSILIN---ALGRSEKLYEAFLLSQRQVLTPLTYNALIGACARNGDV 185
Query: 181 QEFWGLVDVMKKKGYGVASHVRNKMTEKFEKEGLESDLEKLKGIFATGSIDNSIEKVASR 240
++ L+ M++ GY + D I + N K+ S
Sbjct: 186 EKALNLMSKMRRDGY-------------------QPDFVNYSSIIQYLTRSN---KIDSP 223
Query: 241 ICKVVRSDIWGDDVE---RQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFV 297
I + + ++I D +E + D+ V FS K GD P +A+ F A+ +G +
Sbjct: 224 ILQKLYAEIETDKIEIDGHLMNDIIVGFS---------KAGD-PTRAMRFLAMAQSNG-L 272
Query: 298 KHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVD 357
S+ A+ LG + +E+R G E +L + +K+A
Sbjct: 273 NPKPSTLVAVILALGNSGRTHEAEALFEEIRENGLEPRTRAYNALLKGYVRTGSLKDAEF 332
Query: 358 LYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDA-MLNSVLK 416
+ KP + L+ + + + +++V E NV ++ + + +L
Sbjct: 333 VVSEMEKAGVKPDEQTYSLLIDVYAHAGRWES---ARIVLKEMEASNVQPNSYVFSRILA 389
Query: 417 ALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDV 476
G + ++LK M+ G + + + D A + M + G
Sbjct: 390 NYRDKGEWQKSFQVLKDMKSSGVQPDRHFYNVMIDTFGKYNCLDHAMATFERMLSEGIPP 449
Query: 477 GDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKF 536
W +LI HC +G D A + F +M ++ G S ++++N+ + R F
Sbjct: 450 DIVTWNTLIDCHCKSGRHDMAEELFSEM-QQRGYSPCITTYNIMINSMGEQQRWEQVTAF 508
Query: 537 VHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPP---FVDPFIKYVS 593
+ ++ L+P TY L+ F DA+ L ++K GF P + I +
Sbjct: 509 LSK-MQSQGLQPNSITYTTLVDVYGKSGRFSDAIECLEVLKSTGFKPTSTMYNALINAYA 567
Query: 594 KSGTSDDAIAFLKGMTSKRF-PSMSVVLCLFAAFFQARRHSEA 635
+ G S+ A+ + MT++ PS+ + L AF + RR +EA
Sbjct: 568 QRGLSELAVNAFRLMTTEGLTPSLLALNSLINAFGEDRRDAEA 610
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 59/343 (17%), Positives = 126/343 (36%), Gaps = 41/343 (11%)
Query: 303 SYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFA 362
+YNA+ R +++ ++ +MR GY+
Sbjct: 171 TYNALIGACARNGDVEKALNLMSKMRRDGYQ----------------------------- 201
Query: 363 MACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVG 422
P + +++ + S ++D + K+ + + ++N ++ G
Sbjct: 202 ------PDFVNYSSIIQYLTRSNKIDSPILQKLYAEIETDKIEIDGHLMNDIIVGFSKAG 255
Query: 423 RMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWV 482
+ L + G + + L ++G+ EA + + +G + + +
Sbjct: 256 DPTRAMRFLAMAQSNGLNPKPSTLVAVILALGNSGRTHEAEALFEEIRENGLEPRTRAYN 315
Query: 483 SLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVR 542
+L+KG+ G L A +M EK G LL++ Y R ++ + V +
Sbjct: 316 ALLKGYVRTGSLKDAEFVVSEM-EKAGVKPDEQTYSLLIDVYAHAGR-WESARIVLKEME 373
Query: 543 EYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPP---FVDPFIKYVSKSGTSD 599
+++P + ++ N + ++ + +L MK G P F + I K D
Sbjct: 374 ASNVQPNSYVFSRILANYRDKGEWQKSFQVLKDMKSSGVQPDRHFYNVMIDTFGKYNCLD 433
Query: 600 DAIAFLKGMTSKRFPSMSVVL-CLFAAFFQARRHSEAQDLLSK 641
A+A + M S+ P V L ++ RH A++L S+
Sbjct: 434 HAMATFERMLSEGIPPDIVTWNTLIDCHCKSGRHDMAEELFSE 476
>gi|225427506|ref|XP_002263778.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g31840-like [Vitis vinifera]
Length = 1131
Score = 75.5 bits (184), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 110/478 (23%), Positives = 179/478 (37%), Gaps = 75/478 (15%)
Query: 136 VLKNLESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLVDVM-KKKG 194
V+ L S+P A RFF W +G+ VQ F G+ V+ + +
Sbjct: 61 VVFQLRSNPTSALRFFEWAE----------------NFLGLCHPVQSFCGIAHVLLRHRM 104
Query: 195 YGVASHVRNKMTEKFEKEGLESDLEKLKGIFATGSIDNSIEKVASRICKVVRSDIWGDDV 254
+ A+ V ++M +F +LE L G S S V
Sbjct: 105 FDPATRVFDRMVGQF------GNLEVL------GEFHGSFRNYGSNPSTVYSFL------ 146
Query: 255 ERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGRE 314
L+ N +V VD F W + G V + + M +L
Sbjct: 147 ------LHCYCRNGMVDRAVDT-----------FAWMSKMG-VSISHYAASEMLDLLIDS 188
Query: 315 DCIDRFWKVLDEMRSKG---YEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSV 371
D ID + +EM KG YE V F +R V++ ++ + + P +
Sbjct: 189 DRIDVILENYEEM-CKGLGVYEF-------VFNSFLKRGEVEKGLNFHRALVERGLVPKI 240
Query: 372 NCCTFLLRKIVVSKQLDMR--LFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNK 429
C +L+ + + Q+ + F +VR V ++N K L R+ E
Sbjct: 241 VDCNKILKGLCMGNQIGVASDFFDMMVRSGPSPNLVTFSTLINVYCKEL----RLDEAFS 296
Query: 430 ILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHC 489
+ M E G + + S + L AGK +E N A G + ++ S++ +
Sbjct: 297 LYNLMIEKGIVPDLVIYSILINGLFRAGKLEEGNSLFSMALARGVKMDVVIFSSIMDAYV 356
Query: 490 VAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPW 549
GDL KA + + +M+ KEG S +L+N C R ++AC +++ L+P
Sbjct: 357 RVGDLGKAIEVYTRML-KEGISPNVVTYSILINGLCRNGRVLEACGVFGQILKQ-GLEPS 414
Query: 550 HTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFV---DPFIKYVSKSGTSDDAIAF 604
TY LI +D L +M G P V I +S+ G D+A+ F
Sbjct: 415 VLTYSSLIDGFCKSENLRDGFGLYGIMLRKGHVPDVVVCSMLINGLSRQGMMDEALRF 472
>gi|297848852|ref|XP_002892307.1| UDP-glucoronosyl/UDP-glucosyl transferase family protein [Arabidopsis
lyrata subsp. lyrata]
gi|297338149|gb|EFH68566.1| UDP-glucoronosyl/UDP-glucosyl transferase family protein [Arabidopsis
lyrata subsp. lyrata]
Length = 1164
Score = 75.5 bits (184), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 95/425 (22%), Positives = 179/425 (42%), Gaps = 19/425 (4%)
Query: 166 TYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGV----ASHVRNKMTEKFEKEGLESDLEKL 221
+YN+++ V G + E L+ +M+ KGY S V N E + + +EK+
Sbjct: 671 SYNIVIHFVCQLGRINEAHHLLLLMELKGYTPDVISYSTVINGYCRFGELDKVWKLIEKM 730
Query: 222 --KGIFATGSIDNSIEKVASRICKVVRS-DIWGDDVERQLRDLNVTFSNDLVKFVVDKLG 278
KG+ SI + RICK+ + + + + + + + + ++ + F K G
Sbjct: 731 KQKGLKPNSYTYGSIIGLLCRICKLAEAEEAFSEMIGQGILPDTIVYTTLVDGFC--KRG 788
Query: 279 DEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMET 338
D +A F + S + D +Y A+ S + + K+ EM +G E ++ T
Sbjct: 789 D--IRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMLCRGLEPDIIT 846
Query: 339 CVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDM--RLFSKVV 396
+++ + + +K+A ++ + P+V T L+ + LD L ++
Sbjct: 847 FTELMNGYCKAGHIKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMW 906
Query: 397 RVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSA 456
++ + N+ T NS++ L G + E K++ E G A + + + +
Sbjct: 907 KIGLQP-NIFT---YNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKS 962
Query: 457 GKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYA 516
G+ D+A E + M G + L+ G C+ G L+ M+ K G +
Sbjct: 963 GEMDKAQEILTEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAK-GIAPNATT 1021
Query: 517 IDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLM 576
+ LV YC +N + A ++ + ++P TYE L+K R K+A L M
Sbjct: 1022 FNCLVKQYCIRNN-LKAATAIYKDMCSRGVEPDGKTYENLVKGHCNARNMKEAWFLFQEM 1080
Query: 577 KDHGF 581
K GF
Sbjct: 1081 KGKGF 1085
Score = 48.5 bits (114), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 89/390 (22%), Positives = 147/390 (37%), Gaps = 55/390 (14%)
Query: 237 VASRICKVVRSDI---WGDDVERQLRDLNVTFSN--DLVKFVVDKLGDEPKKALIFFRWA 291
VAS+ KV +S I W ER ++ +F DL+ + G +P+ +FF+
Sbjct: 553 VASKDLKVAQSLISSFW----ERPKLNVTESFVQFFDLLVYTYKDWGSDPRVFDVFFQVL 608
Query: 292 EESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNM 351
E G + KV ++M + G + +++C L R S ++
Sbjct: 609 VEFGMLPEAR--------------------KVFEKMLNYGLVLSVDSCNVYLARLS-KDC 647
Query: 352 VKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAML 411
K A + F + P V C V S + + ++ R+ E ++L L
Sbjct: 648 NKTATAIIVF----REFPEVGVCWN-----VASYNIVIHFVCQLGRI-NEAHHLLLLMEL 697
Query: 412 NSVLKALISVG-------RMGECNKILKAME---EGGFIASSNMKSKIAFRLSSAGKKDE 461
+IS R GE +K+ K +E + G +S I L K E
Sbjct: 698 KGYTPDVISYSTVINGYCRFGELDKVWKLIEKMKQKGLKPNSYTYGSIIGLLCRICKLAE 757
Query: 462 ANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLV 521
A E M G ++ +L+ G C GD+ A+ F +M ++ T ++
Sbjct: 758 AEEAFSEMIGQGILPDTIVYTTLVDGFCKRGDIRAASKFFYEMHSRDITPDV-LTYTAII 816
Query: 522 NTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGF 581
+ +C ++A K H + L+P T+ EL+ KDA + M G
Sbjct: 817 SGFCQIGDMVEAGKLFHEMLCR-GLEPDIITFTELMNGYCKAGHIKDAFRVHNHMIQAGC 875
Query: 582 PPFVDPF---IKYVSKSGTSDDAIAFLKGM 608
P V + I + K G D A L M
Sbjct: 876 SPNVVTYTTLIDGLCKEGDLDSANELLHEM 905
>gi|224111544|ref|XP_002315895.1| predicted protein [Populus trichocarpa]
gi|222864935|gb|EEF02066.1| predicted protein [Populus trichocarpa]
Length = 424
Score = 75.1 bits (183), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 98/454 (21%), Positives = 176/454 (38%), Gaps = 68/454 (14%)
Query: 132 MVLKVLKNLESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLVDVMK 191
+V + LK L ++ A FF W +++ + S+++Y+ ++ +G W LV MK
Sbjct: 7 LVFEALKKLSNAGALALSFFRWAEKQKGFQYSTESYHALIESLGKIKQFNVIWNLVTDMK 66
Query: 192 KKG-------------YGVASHVRNKMTE--KFEKEGLESDLEKLKGIFATGSIDNSIEK 236
+KG Y A V+ + K EK GL+
Sbjct: 67 QKGLLNKETFALISRRYARARKVKEAVDAFMKMEKFGLK--------------------- 105
Query: 237 VASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGF 296
I DV R L L + + + V DK+ + GF
Sbjct: 106 ------------IESSDVNRLLDTLCKSRQVERAQLVFDKMN--------------KRGF 139
Query: 297 VKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAV 356
V D SY + G+E + R +V +EM+ +G+E ++ T ++ + +A+
Sbjct: 140 VA-DIKSYTILLEGWGQEKNLSRLMEVYNEMKDEGFEPDVVTYGILINAHCKSRRYDDAI 198
Query: 357 DLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLK 416
+L+ A KPS + L+ + K+L L + + + +G V N+V+
Sbjct: 199 ELFHEMEAKNCKPSPHIYCTLINGLGAEKRLSEAL--EFFELSKASGFVPEAPTYNAVVG 256
Query: 417 ALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDV 476
A RM + + + M +GG S+ I L AGK A M G
Sbjct: 257 AYCWSERMDDVQRTIDEMRKGGVGPSARTYDIILHHLIRAGKTKIAYSVFQKMSCEGCQP 316
Query: 477 GDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKF 536
+ +++ C +D A + +M K G + L+N+ C +++ +AC +
Sbjct: 317 SVSTYEIIVRMFCNEDRVDMAIKVWDQMKAK-GILPVMHMFSTLINSLCHESKLDEACMY 375
Query: 537 VHNCVREYDLKPWHTTYEELIKNLLVQRGFKDAL 570
+ + ++P + L +NLL G KD +
Sbjct: 376 FQEML-DVGIRPPAQLFSNLKQNLL-DEGKKDTV 407
Score = 62.8 bits (151), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 84/376 (22%), Positives = 149/376 (39%), Gaps = 13/376 (3%)
Query: 266 SNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLD 325
S LV + KL + AL FFRWAE+ ++ SY+A+ LG+ + W ++
Sbjct: 4 SPSLVFEALKKLSNAGALALSFFRWAEKQKGFQYSTESYHALIESLGKIKQFNVIWNLVT 63
Query: 326 EMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSK 385
+M+ KG + ET + R++ VKEAVD + K + LL + S+
Sbjct: 64 DMKQKGL-LNKETFALISRRYARARKVKEAVDAFMKMEKFGLKIESSDVNRLLDTLCKSR 122
Query: 386 QLD--MRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASS 443
Q++ +F K+ + G V +L+ + ++ M++ GF
Sbjct: 123 QVERAQLVFDKM----NKRGFVADIKSYTILLEGWGQEKNLSRLMEVYNEMKDEGFEPDV 178
Query: 444 NMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQK 503
+ + + D+A E MEA ++ +LI G L +A + F+
Sbjct: 179 VTYGILINAHCKSRRYDDAIELFHEMEAKNCKPSPHIYCTLINGLGAEKRLSEALEFFE- 237
Query: 504 MVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQ 563
+ + G + +V YC R D + + +R+ + P TY+ ++ +L+
Sbjct: 238 LSKASGFVPEAPTYNAVVGAYCWSERMDDVQRTIDE-MRKGGVGPSARTYDIILHHLIRA 296
Query: 564 RGFKDALSLLCLMKDHGFPPFVDPF---IKYVSKSGTSDDAIAFLKGMTSKR-FPSMSVV 619
K A S+ M G P V + ++ D AI M +K P M +
Sbjct: 297 GKTKIAYSVFQKMSCEGCQPSVSTYEIIVRMFCNEDRVDMAIKVWDQMKAKGILPVMHMF 356
Query: 620 LCLFAAFFQARRHSEA 635
L + + EA
Sbjct: 357 STLINSLCHESKLDEA 372
>gi|4836917|gb|AAD30619.1|AC007153_11 similar to indole-3-acetate beta-glucosyltransferase [Arabidopsis
thaliana]
Length = 1184
Score = 75.1 bits (183), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 102/426 (23%), Positives = 179/426 (42%), Gaps = 21/426 (4%)
Query: 166 TYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGV----ASHVRNKMTEKFEKEGLESDLE-- 219
+YN+++ V G ++E L+ +M+ KGY S V N E + + +E
Sbjct: 691 SYNIVIHFVCQLGRIKEAHHLLLLMELKGYTPDVISYSTVVNGYCRFGELDKVWKLIEVM 750
Query: 220 KLKGIFATGSIDNSIEKVASRICKVVRSDIWGDDVERQ--LRDLNVTFSNDLVKFVVDKL 277
K KG+ I SI + RICK+ ++ ++ RQ L D V ++ + F K
Sbjct: 751 KRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGILPD-TVVYTTLIDGFC--KR 807
Query: 278 GDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEME 337
GD +A F + S + D +Y A+ S + + K+ EM KG E +
Sbjct: 808 GD--IRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSV 865
Query: 338 TCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDM--RLFSKV 395
T +++ + + +K+A ++ + P+V T L+ + LD L ++
Sbjct: 866 TFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEM 925
Query: 396 VRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSS 455
++ + N+ T NS++ L G + E K++ E G A + + +
Sbjct: 926 WKIGLQP-NIFT---YNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCK 981
Query: 456 AGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGY 515
+G+ D+A E + M G + L+ G C+ G L+ M+ K G +
Sbjct: 982 SGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAK-GIAPNAT 1040
Query: 516 AIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCL 575
+ LV YC +N + A ++ + + P TYE L+K R K+A L
Sbjct: 1041 TFNSLVKQYCIRNN-LKAATAIYKDMCSRGVGPDGKTYENLVKGHCKARNMKEAWFLFQE 1099
Query: 576 MKDHGF 581
MK GF
Sbjct: 1100 MKGKGF 1105
Score = 50.1 bits (118), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 94/395 (23%), Positives = 150/395 (37%), Gaps = 65/395 (16%)
Query: 237 VASRICKVVRSDI---WGDDVERQLRDLNVTFSN----DLVKFVVDKLGDEPKKALIFFR 289
VAS+ KV +S I W ER LNVT S DL+ + G +P+ +FF+
Sbjct: 573 VASKDLKVAQSLISSFW----ERP--KLNVTDSFVQFFDLLVYTYKDWGSDPRVFDVFFQ 626
Query: 290 WAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSER 349
+ G ++ +V ++M + G + +++C L R S+
Sbjct: 627 VLVDFGLLREAR--------------------RVFEKMLNYGLVLSVDSCNVYLTRLSK- 665
Query: 350 NMVKEAVDLYEFAMAC---KNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVL 406
D Y+ A A + P V C V S + + ++ R+ +E ++L
Sbjct: 666 -------DCYKTATAIIVFREFPEVGVCWN-----VASYNIVIHFVCQLGRI-KEAHHLL 712
Query: 407 TDAMLNSVLKALISVG-------RMGECNKILK---AMEEGGFIASSNMKSKIAFRLSSA 456
L +IS R GE +K+ K M+ G +S + I L
Sbjct: 713 LLMELKGYTPDVISYSTVVNGYCRFGELDKVWKLIEVMKRKGLKPNSYIYGSIIGLLCRI 772
Query: 457 GKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYA 516
K EA E M G ++ +LI G C GD+ A+ F +M ++ T
Sbjct: 773 CKLAEAEEAFSEMIRQGILPDTVVYTTLIDGFCKRGDIRAASKFFYEMHSRDITPDV-LT 831
Query: 517 IDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLM 576
+++ +C ++A K H + L+P T+ ELI KDA + M
Sbjct: 832 YTAIISGFCQIGDMVEAGKLFHEMFCK-GLEPDSVTFTELINGYCKAGHMKDAFRVHNHM 890
Query: 577 KDHGFPPFVDPF---IKYVSKSGTSDDAIAFLKGM 608
G P V + I + K G D A L M
Sbjct: 891 IQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEM 925
>gi|15232243|ref|NP_191564.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75181813|sp|Q9M1D8.1|PP288_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g60050
gi|7076758|emb|CAB75920.1| putative protein [Arabidopsis thaliana]
gi|332646485|gb|AEE80006.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 473
Score = 75.1 bits (183), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 95/392 (24%), Positives = 161/392 (41%), Gaps = 28/392 (7%)
Query: 238 ASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVV---------DKLGDEPKKALIFF 288
ASR+ ++ D G + + L +LNV S LV+ V+ D K A FF
Sbjct: 77 ASRVLVTLQLDESGFNSKSVLDELNVRVSGLLVREVLVGILRNLSYDNKARCAKLAYRFF 136
Query: 289 RWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSE 348
W+ E +H +SY+ + + W+++DEM G+ T ++ E
Sbjct: 137 LWSGEQECFRHTVNSYHLLMKIFAECGEYKAMWRLVDEMVQDGFPTTARTFNLLICSCGE 196
Query: 349 RNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENG---NV 405
+ K+AV + + +P + +L ++ KQ +L V + E+G +V
Sbjct: 197 AGLAKQAVVQFMKSKTFNYRPFKHSYNAILNSLLGVKQ--YKLIEWVYKQMLEDGFSPDV 254
Query: 406 LTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEF 465
LT N +L +G+M +++ M GF S + + L K A
Sbjct: 255 LT---YNILLWTNYRLGKMDRFDRLFDEMARDGFSPDSYTYNILLHILGKGNKPLAALTT 311
Query: 466 MDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYC 525
++HM+ G D + +LI G AG+L+ +MV K G +++ Y
Sbjct: 312 LNHMKEVGIDPSVLHYTTLIDGLSRAGNLEACKYFLDEMV-KAGCRPDVVCYTVMITGYV 370
Query: 526 SKNRAIDACKFVHNCVREYDLK---PWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGF- 581
+D K RE +K P TY +I+ L + F++A LL M+ G
Sbjct: 371 VSGE-LDKAK---EMFREMTVKGQLPNVFTYNSMIRGLCMAGEFREACWLLKEMESRGCN 426
Query: 582 PPFV--DPFIKYVSKSGTSDDAIAFLKGMTSK 611
P FV + Y+ K+G +A ++ M K
Sbjct: 427 PNFVVYSTLVSYLRKAGKLSEARKVIREMVKK 458
Score = 65.9 bits (159), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 94/378 (24%), Positives = 165/378 (43%), Gaps = 37/378 (9%)
Query: 120 QLELSGVVFTHEMVLKVLKNLESSPDEAR------RFFNWVLEKESERLSSKTYNLMLRI 173
+ +SG++ E+++ +L+NL S ++AR RFF W E+E R + +Y+L+++I
Sbjct: 101 NVRVSGLL-VREVLVGILRNL-SYDNKARCAKLAYRFFLWSGEQECFRHTVNSYHLLMKI 158
Query: 174 VGVHGLVQEFWGLVDVMKKKGYGVASHVRNKMTEKFEKEGL--ESDLEKLKG-IFATGSI 230
G + W LVD M + G+ + N + + GL ++ ++ +K F
Sbjct: 159 FAECGEYKAMWRLVDEMVQDGFPTTARTFNLLICSCGEAGLAKQAVVQFMKSKTFNYRPF 218
Query: 231 DNSIEKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVV-----DKLGDEPKKAL 285
+S + + + V + + ++ L D FS D++ + + +LG +
Sbjct: 219 KHSYNAILNSLLGVKQYKLIEWVYKQMLED---GFSPDVLTYNILLWTNYRLGKMDRFDR 275
Query: 286 IFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYE---MEMETCVKV 342
+F A + GF D +YN + +LG+ + L+ M+ G + + T +
Sbjct: 276 LFDEMARD-GF-SPDSYTYNILLHILGKGNKPLAALTTLNHMKEVGIDPSVLHYTTLIDG 333
Query: 343 LGRFSERNMVKEAVDLYEFAMA-CKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRE 401
L R K +D E A C +P V C T ++ VVS +LD K +FRE
Sbjct: 334 LSRAGNLEACKYFLD--EMVKAGC--RPDVVCYTVMITGYVVSGELD-----KAKEMFRE 384
Query: 402 ---NGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGK 458
G + NS+++ L G E +LK ME G + + S + L AGK
Sbjct: 385 MTVKGQLPNVFTYNSMIRGLCMAGEFREACWLLKEMESRGCNPNFVVYSTLVSYLRKAGK 444
Query: 459 KDEANEFMDHMEASGSDV 476
EA + + M G V
Sbjct: 445 LSEARKVIREMVKKGHYV 462
>gi|255548471|ref|XP_002515292.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223545772|gb|EEF47276.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 533
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 100/414 (24%), Positives = 167/414 (40%), Gaps = 57/414 (13%)
Query: 230 IDNSIEKV-ASRICKVVRSDIWGD-DVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIF 287
I++S + V R+CKV+ D ++E L + + S+DLV V+++ K A F
Sbjct: 56 INSSADPVEVDRVCKVIDELFALDRNMEAVLDECGINLSHDLVIDVLERFCHARKPAFRF 115
Query: 288 FRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFS 347
F WA E +HD +YN+M S+L + + +L+EM KG + M+T + F+
Sbjct: 116 FCWAGEKQGFEHDSRTYNSMMSILAKTRQFETVVSMLEEMGGKGV-LTMDTFSIAMRAFA 174
Query: 348 ERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSK--QLDMRLFSKVVRVFRENGNV 405
K+AV ++E K V LL + +K + LF + F N
Sbjct: 175 AAKERKKAVAMFELMKKYNYKVGVETINHLLDSLGRAKLGKEAQALFENLKGRFTPNLRT 234
Query: 406 LTDAMLNSVLKALISVGRMGECNKILKAMEEGGF---IASSNMKSKIAFRLSSAGKKDEA 462
T +LN K V + E + M + GF I + N+ + R S + D
Sbjct: 235 YT-VLLNGWCK----VKNLMEAGSVWNEMIDKGFKPDIVAHNIMLEGLLR--SKQRSDAI 287
Query: 463 NEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVN 522
FM M+A G + + LI+ C +++A + FQ+M++
Sbjct: 288 KLFM-VMKAKGPSPDVRSYTILIRYLCRQSKMEEAVEYFQEMID---------------- 330
Query: 523 TYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFP 582
+ C + A+ C LI ++ LL MK+ G P
Sbjct: 331 SGCKPDAAVYTC---------------------LITGFGNRKRMDMVYDLLKEMKEEGCP 369
Query: 583 P---FVDPFIKYVSKSGTSDDAIAFLKGMTSKRF-PSMSVVLCLFAAFFQARRH 632
P + IK +++ DDA K MT P++ + ++FQ R +
Sbjct: 370 PDGLTYNALIKLMTRLKMPDDAARIYKKMTQSGIEPTIHTYNMIMKSYFQTRNY 423
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 87/427 (20%), Positives = 160/427 (37%), Gaps = 79/427 (18%)
Query: 121 LELSGVVFTHEMVLKVLKNLESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVG----- 175
L+ G+ +H++V+ VL+ + A RFF W EK+ S+TYN M+ I+
Sbjct: 86 LDECGINLSHDLVIDVLERFCHARKPAFRFFCWAGEKQGFEHDSRTYNSMMSILAKTRQF 145
Query: 176 --VHGLVQEFWG---------------------------LVDVMKKKGYGVASHVRNKMT 206
V +++E G + ++MKK Y V N +
Sbjct: 146 ETVVSMLEEMGGKGVLTMDTFSIAMRAFAAAKERKKAVAMFELMKKYNYKVGVETINHLL 205
Query: 207 EKFEKEGL----ESDLEKLKGIFATGSIDNSIEKVASRICKVVR----SDIWGDDVERQL 258
+ + L ++ E LKG F ++ + + CKV +W + +++
Sbjct: 206 DSLGRAKLGKEAQALFENLKGRFTPNLRTYTV--LLNGWCKVKNLMEAGSVWNEMIDKGF 263
Query: 259 RD------------LNVTFSNDLVKF--VVDKLGDEP------------------KKALI 286
+ L +D +K V+ G P ++A+
Sbjct: 264 KPDIVAHNIMLEGLLRSKQRSDAIKLFMVMKAKGPSPDVRSYTILIRYLCRQSKMEEAVE 323
Query: 287 FFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRF 346
+F+ +SG K D + Y + + G +D + +L EM+ +G + T ++
Sbjct: 324 YFQEMIDSG-CKPDAAVYTCLITGFGNRKRMDMVYDLLKEMKEEGCPPDGLTYNALIKLM 382
Query: 347 SERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVL 406
+ M +A +Y+ +P+++ +++ ++ +M V G
Sbjct: 383 TRLKMPDDAARIYKKMTQSGIEPTIHTYNMIMKSYFQTRNYEMG--RAVWDEMSRKGFCP 440
Query: 407 TDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFM 466
D ++ LIS GR GE K L+ M E G A +K LS G D E
Sbjct: 441 DDNSYTVLIGGLISQGRSGEACKYLEEMLEKGMKAPQLDYNKFGADLSRGGNPDILEELA 500
Query: 467 DHMEASG 473
++ SG
Sbjct: 501 QRLKFSG 507
Score = 43.1 bits (100), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 69/157 (43%), Gaps = 10/157 (6%)
Query: 519 LLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKD 578
+L+N +C ++A V N + + KP + +++ LL + DA+ L +MK
Sbjct: 237 VLLNGWCKVKNLMEAGS-VWNEMIDKGFKPDIVAHNIMLEGLLRSKQRSDAIKLFMVMKA 295
Query: 579 HGFPPFVDPF---IKYVSKSGTSDDAIAFLKGMT-SKRFPSMSVVLCLFAAFFQARRHSE 634
G P V + I+Y+ + ++A+ + + M S P +V CL F +R
Sbjct: 296 KGPSPDVRSYTILIRYLCRQSKMEEAVEYFQEMIDSGCKPDAAVYTCLITGFGNRKRMDM 355
Query: 635 AQDLLSK-----CPRYVRNHADVLNLLYSKKSGGDSA 666
DLL + CP + ++ L+ K D+A
Sbjct: 356 VYDLLKEMKEEGCPPDGLTYNALIKLMTRLKMPDDAA 392
>gi|356575965|ref|XP_003556106.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g60050-like isoform 1 [Glycine max]
gi|356575967|ref|XP_003556107.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g60050-like isoform 2 [Glycine max]
Length = 480
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 88/402 (21%), Positives = 161/402 (40%), Gaps = 22/402 (5%)
Query: 222 KGIFATGSIDNSIEKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDE- 280
KG T +D A R+ +V+R D G D L +L+V S LV+ V+ +
Sbjct: 74 KGFLETVKLD------AKRVLEVLRQDGPGLDARLVLGELHVRPSGLLVREVLFGILKNI 127
Query: 281 --------PKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGY 332
K A FF W + +H ++Y+ + S+ + W+++DEM KG
Sbjct: 128 NCQNKTRCAKLAYKFFVWCSQQEGYQHTVNAYHLVMSIYAECEEFKALWRLVDEMIEKGL 187
Query: 333 EMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLF 392
T ++ E + K V+ + + +P + +L ++V Q +L
Sbjct: 188 PATARTFNILIRTCGEAGLAKNLVERFIKSKTFNFRPFKHSYNAILHGLLVLNQ--YKLI 245
Query: 393 SKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFR 452
V + +G N V+ A +G++ + +++L M GF + + +
Sbjct: 246 EWVYQQMLLDGFPSDILTYNIVMYAKYRLGKLDQFHRLLDEMGRNGFSPDFHTFNILLHV 305
Query: 453 LSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSH 512
L K A ++HM G + + +LI G AG+LD F +M++ E
Sbjct: 306 LGKGDKPLAALNLLNHMREMGIEPTVLHFTTLIDGLSRAGNLDACKYFFDEMIKNECRPD 365
Query: 513 AGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSL 572
A +++ Y A + + + + P TY +I+ L + F +A S+
Sbjct: 366 V-VAYTVMITGYVVAGEIEKALEMYQDMISREQV-PNVFTYNSIIRGLCMAGKFDEACSM 423
Query: 573 LCLMKDHGFPP---FVDPFIKYVSKSGTSDDAIAFLKGMTSK 611
L M+ G P + + +G + DA ++ MT K
Sbjct: 424 LKEMETKGCSPNSVVYNTLASCLRNAGKTADAHEVIRQMTEK 465
>gi|449503427|ref|XP_004161997.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At1g71060, mitochondrial-like [Cucumis sativus]
Length = 542
Score = 74.7 bits (182), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 94/451 (20%), Positives = 172/451 (38%), Gaps = 73/451 (16%)
Query: 202 RNKMTEKFEKEGLESDLEKLKGIFATGSIDNSIEKVASRICKVVRSDIWGDDVERQLRDL 261
RN + + +E + LK + + I + A + CK++ + +E L
Sbjct: 58 RNYTSHRSTHHRIEHSKQDLKASQKSIVESDEIAQDAEKFCKLISKNP-NSCIESLLDGA 116
Query: 262 NVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFW 321
+ S L+ V+ KL + AL FFRWAE+ KH SYN + LG+ + W
Sbjct: 117 PMELSPALIVEVLKKLSNAGFLALSFFRWAEKQKGFKHTTESYNLLIEALGKIKQFNVIW 176
Query: 322 KVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYE------FAMA----------- 364
++ +M+ KG + ET + R++ VKEAV+ +E F M
Sbjct: 177 NLVSDMKRKGI-LSRETFALITRRYARARKVKEAVESFEKMEKFGFQMGVSDFNRLLDTL 235
Query: 365 CKN------------------KPSVNCCTFLLR--------------------------- 379
CK+ KP + T LL
Sbjct: 236 CKSRNVKKAQEVFDKMKHGRFKPDIKSYTILLEGWGQDQNLLKLNEVYREMRDEGFEPDV 295
Query: 380 ---KIVVSKQLDMRLFSKVVRVFR--ENGNV-LTDAMLNSVLKALISVGRMGECNKILKA 433
I+++ R + + +R+F E N+ + + +++ L S R+ E + +
Sbjct: 296 VTFGILINAHCKARKYDEAIRLFHEMEAKNIKPSPHVFCTLINGLGSEKRLKEALEFFEQ 355
Query: 434 MEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGD 493
++ GF + + + + K A +D M SG + + +I H + G
Sbjct: 356 LKLSGFAPEAPTYNAVVGAYCWSMKMAYAYRMVDEMRKSGVGPNSRTY-DIILHHLIKGR 414
Query: 494 LDKAA-DCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTT 552
K A FQ+M + G D+++ +C++ R +D + + ++ + P
Sbjct: 415 KSKEAYSVFQRMSREPGCEPTLSTYDIMIRMFCNEER-VDMAIQIWDEMKAKGVLPGMHL 473
Query: 553 YEELIKNLLVQRGFKDALSLLCLMKDHGFPP 583
+ LI +L + +DA + M D G P
Sbjct: 474 FSTLINSLCHEHKLEDACTYFQEMLDVGIRP 504
Score = 49.3 bits (116), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 90/416 (21%), Positives = 162/416 (38%), Gaps = 81/416 (19%)
Query: 132 MVLKVLKNLESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLVDVMK 191
++++VLK L ++ A FF W +++ + ++++YNL++ +G W LV MK
Sbjct: 124 LIVEVLKKLSNAGFLALSFFRWAEKQKGFKHTTESYNLLIEALGKIKQFNVIWNLVSDMK 183
Query: 192 KKGY----GVASHVRNKMTEKFEKEGLESDLEKLKGI-FATGSIDNSIEKVASRICKVVR 246
+KG A R + KE +ES EK++ F G D ++ +CK
Sbjct: 184 RKGILSRETFALITRRYARARKVKEAVES-FEKMEKFGFQMGVSD--FNRLLDTLCK--- 237
Query: 247 SDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNA 306
NV + + V DK+ + G K D SY
Sbjct: 238 -------------SRNVKKAQE----VFDKM---------------KHGRFKPDIKSYTI 265
Query: 307 MASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACK 366
+ G++ + + +V EMR +G+E ++ T ++ + EA+ L+ A
Sbjct: 266 LLEGWGQDQNLLKLNEVYREMRDEGFEPDVVTFGILINAHCKARKYDEAIRLFHEMEAKN 325
Query: 367 NKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGE 426
KPS + L+ + K+L L + + +G N+V+ A +M
Sbjct: 326 IKPSPHVFCTLINGLGSEKRLKEAL--EFFEQLKLSGFAPEAPTYNAVVGAYCWSMKMAY 383
Query: 427 CNKILKAMEEGGFIASSNM------------KSKIAF----RLS---------------- 454
+++ M + G +S KSK A+ R+S
Sbjct: 384 AYRMVDEMRKSGVGPNSRTYDIILHHLIKGRKSKEAYSVFQRMSREPGCEPTLSTYDIMI 443
Query: 455 ----SAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVE 506
+ + D A + D M+A G G ++ +LI C L+ A FQ+M++
Sbjct: 444 RMFCNEERVDMAIQIWDEMKAKGVLPGMHLFSTLINSLCHEHKLEDACTYFQEMLD 499
>gi|15239161|ref|NP_201383.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75170571|sp|Q9FH87.1|PP447_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At5g65820
gi|9758569|dbj|BAB09050.1| unnamed protein product [Arabidopsis thaliana]
gi|332010728|gb|AED98111.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 637
Score = 74.7 bits (182), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 84/365 (23%), Positives = 152/365 (41%), Gaps = 21/365 (5%)
Query: 254 VERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGR 313
+E L + V L++ V+++ GD FF WA + H Y +M +L +
Sbjct: 100 LELALNESGVELRPGLIERVLNRCGDAGNLGYRFFVWAAKQPRYCHSIEVYKSMVKILSK 159
Query: 314 EDCIDRFWKVLDEMRSKGYEM-EMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVN 372
W +++EMR + ++ E E V ++ RF+ +MVK+A+++ + +P
Sbjct: 160 MRQFGAVWGLIEEMRKENPQLIEPELFVVLVQRFASADMVKKAIEVLDEMPKFGFEPDEY 219
Query: 373 CCTFLLRKIVVSKQLD--MRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKI 430
LL + + +LF + F N T S+L VG+M E +
Sbjct: 220 VFGCLLDALCKHGSVKDAAKLFEDMRMRFPVNLRYFT-----SLLYGWCRVGKMMEAKYV 274
Query: 431 LKAMEEGGF----IASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIK 486
L M E GF + +N+ S A +AGK +A + + M G + + LI+
Sbjct: 275 LVQMNEAGFEPDIVDYTNLLSGYA----NAGKMADAYDLLRDMRRRGFEPNANCYTVLIQ 330
Query: 487 GHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDL 546
C +++A F +M E + LV+ +C + ID C V + + + L
Sbjct: 331 ALCKVDRMEEAMKVFVEMERYECEADV-VTYTALVSGFCKWGK-IDKCYIVLDDMIKKGL 388
Query: 547 KPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPF---IKYVSKSGTSDDAIA 603
P TY ++ + F++ L L+ M+ + P + + I+ K G +A+
Sbjct: 389 MPSELTYMHIMVAHEKKESFEECLELMEKMRQIEYHPDIGIYNVVIRLACKLGEVKEAVR 448
Query: 604 FLKGM 608
M
Sbjct: 449 LWNEM 453
>gi|449465535|ref|XP_004150483.1| PREDICTED: pentatricopeptide repeat-containing protein At1g71060,
mitochondrial-like [Cucumis sativus]
Length = 542
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 94/451 (20%), Positives = 172/451 (38%), Gaps = 73/451 (16%)
Query: 202 RNKMTEKFEKEGLESDLEKLKGIFATGSIDNSIEKVASRICKVVRSDIWGDDVERQLRDL 261
RN + + +E + LK + + I + A + CK++ + +E L
Sbjct: 58 RNYTSHRSTHHRIEHSKQDLKASQKSIVESDEIAQDAEKFCKLISKNP-NSCIESLLDGA 116
Query: 262 NVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFW 321
+ S L+ V+ KL + AL FFRWAE+ KH SYN + LG+ + W
Sbjct: 117 PMELSPALIVEVLKKLSNAGFLALSFFRWAEKQKGFKHTTESYNLLIEALGKIKQFNVIW 176
Query: 322 KVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYE------FAMA----------- 364
++ +M+ KG + ET + R++ VKEAV+ +E F M
Sbjct: 177 NLVSDMKRKGI-LSRETFALITRRYARARKVKEAVESFEKMEKFGFQMGVSDFNRLLDTL 235
Query: 365 CKN------------------KPSVNCCTFLLR--------------------------- 379
CK+ KP + T LL
Sbjct: 236 CKSRNVKKAQEVFDKMKHGRFKPDIKSYTILLEGWGQDQNLLKLNEVYREMRDEGFEPDV 295
Query: 380 ---KIVVSKQLDMRLFSKVVRVFR--ENGNV-LTDAMLNSVLKALISVGRMGECNKILKA 433
I+++ R + + +R+F E N+ + + +++ L S R+ E + +
Sbjct: 296 VTFGILINAHCKARKYDEAIRLFHEMEAKNIKPSPHVFCTLINGLGSEKRLKEALEFFEQ 355
Query: 434 MEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGD 493
++ GF + + + + K A +D M SG + + +I H + G
Sbjct: 356 LKLSGFAPEAPTYNAVVGAYCWSMKMAYAYRMVDEMRKSGVGPNSRTY-DIILHHLIKGR 414
Query: 494 LDKAA-DCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTT 552
K A FQ+M + G D+++ +C++ R +D + + ++ + P
Sbjct: 415 KSKEAYSVFQRMSREPGCEPTLSTYDIMIRMFCNEER-VDMAIQIWDEMKAKGVLPGMHL 473
Query: 553 YEELIKNLLVQRGFKDALSLLCLMKDHGFPP 583
+ LI +L + +DA + M D G P
Sbjct: 474 FSTLINSLCHEHKLEDACTYFQEMLDVGIRP 504
Score = 49.3 bits (116), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 90/416 (21%), Positives = 162/416 (38%), Gaps = 81/416 (19%)
Query: 132 MVLKVLKNLESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLVDVMK 191
++++VLK L ++ A FF W +++ + ++++YNL++ +G W LV MK
Sbjct: 124 LIVEVLKKLSNAGFLALSFFRWAEKQKGFKHTTESYNLLIEALGKIKQFNVIWNLVSDMK 183
Query: 192 KKGY----GVASHVRNKMTEKFEKEGLESDLEKLKGI-FATGSIDNSIEKVASRICKVVR 246
+KG A R + KE +ES EK++ F G D ++ +CK
Sbjct: 184 RKGILSRETFALITRRYARARKVKEAVES-FEKMEKFGFQMGVSD--FNRLLDTLCK--- 237
Query: 247 SDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNA 306
NV + + V DK+ + G K D SY
Sbjct: 238 -------------SRNVKKAQE----VFDKM---------------KHGRFKPDIKSYTI 265
Query: 307 MASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACK 366
+ G++ + + +V EMR +G+E ++ T ++ + EA+ L+ A
Sbjct: 266 LLEGWGQDQNLLKLNEVYREMRDEGFEPDVVTFGILINAHCKARKYDEAIRLFHEMEAKN 325
Query: 367 NKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGE 426
KPS + L+ + K+L L + + +G N+V+ A +M
Sbjct: 326 IKPSPHVFCTLINGLGSEKRLKEAL--EFFEQLKLSGFAPEAPTYNAVVGAYCWSMKMAY 383
Query: 427 CNKILKAMEEGGFIASSNM------------KSKIAF----RLS---------------- 454
+++ M + G +S KSK A+ R+S
Sbjct: 384 AYRMVDEMRKSGVGPNSRTYDIILHHLIKGRKSKEAYSVFQRMSREPGCEPTLSTYDIMI 443
Query: 455 ----SAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVE 506
+ + D A + D M+A G G ++ +LI C L+ A FQ+M++
Sbjct: 444 RMFCNEERVDMAIQIWDEMKAKGVLPGMHLFSTLINSLCHEHKLEDACTYFQEMLD 499
>gi|356562783|ref|XP_003549648.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74850,
chloroplastic-like [Glycine max]
Length = 859
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 77/358 (21%), Positives = 141/358 (39%), Gaps = 7/358 (1%)
Query: 282 KKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVK 341
+++L F++ + + K +E Y M ++LGRE +D+ +V DEM S G +
Sbjct: 117 QRSLRLFKYMQRQIWCKPNEHIYTIMITLLGREGLLDKCREVFDEMPSNGVARTVYVYTA 176
Query: 342 VLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRE 401
V+ + +++L + PS+ ++ LD + R
Sbjct: 177 VINAYGRNGQFHASLELLNGMKQERVSPSILTYNTVINA-CARGGLDWEGLLGLFAEMRH 235
Query: 402 NGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDE 461
G N++L A G E + + M E G + N S + + ++
Sbjct: 236 EGIQPDVITYNTLLGACAHRGLGDEAEMVFRTMNESGIVPDINTYSYLVQTFGKLNRLEK 295
Query: 462 ANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLV 521
+E + ME+ G+ + L++ + G + +A D F++M + G +L+
Sbjct: 296 VSELLREMESGGNLPDITSYNVLLEAYAELGSIKEAMDVFRQM-QAAGCVANAATYSVLL 354
Query: 522 NTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGF 581
N Y R D + + ++ + P TY LI+ FK+ ++L M +
Sbjct: 355 NLYGKHGR-YDDVRDIFLEMKVSNTDPDAGTYNILIQVFGEGGYFKEVVTLFHDMVEENV 413
Query: 582 PPFVDPF---IKYVSKSGTSDDAIAFLKGMTSKRF-PSMSVVLCLFAAFFQARRHSEA 635
P ++ + I K G +DA L M K PS + AF QA + EA
Sbjct: 414 EPNMETYEGLIFACGKGGLYEDAKKILLHMNEKGIVPSSKAYTGVIEAFGQAALYEEA 471
>gi|255660950|gb|ACU25644.1| pentatricopeptide repeat-containing protein [Casselia glaziovii]
Length = 481
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 89/391 (22%), Positives = 164/391 (41%), Gaps = 49/391 (12%)
Query: 258 LRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCI 317
+R+L +F ++LV V+ + + AL FFRW E S +HD ++ + +LGR +
Sbjct: 3 IRNLVPSFDHELVYNVLHG-AKKTEHALQFFRWVERSNLFQHDRETHLKIIEILGRASKL 61
Query: 318 DRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFL 377
+ +L +M KG E + + V ++ + ++ +V+E+V
Sbjct: 62 NHARCILLDMPKKGLEWDEDLWVLMIDSYGKKGIVQESV--------------------- 100
Query: 378 LRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEG 437
+LF K+ E G T +++ K ++ GR + M
Sbjct: 101 ------------KLFQKM----EELGVERTIKSYDALFKVILRRGRFMMAKRYFNKMLNE 144
Query: 438 GFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKA 497
G + + + + + +GK + AN F + M++ + +LI G+ +++A
Sbjct: 145 GIEPTRHTFNVMIWGFFLSGKVETANXFFEDMKSRDITPDVITYNTLINGYYRVKKMEEA 204
Query: 498 ADCFQKMVEKEGTSHAGYAI--DLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEE 555
F VE +G + I L+ Y S +R DA + ++ + +KP TY
Sbjct: 205 ERYF---VEMKGRNIEPTVITYTTLIKGYVSVDRVDDALSLMEE-MKGFGIKPNAITYST 260
Query: 556 LIKNLLVQRGFKDALSLLCLMKDHGFPPFVDP-FIKYVS---KSGTSDDAIAFLKGMTSK 611
L+ L +A S+L M D P + F+K +S K+G D A LK M
Sbjct: 261 LLPGLCNAEKMSEAQSILKEMVDKYIAPTDNSIFLKLISGQCKAGNLDAAADVLKAMIRL 320
Query: 612 RFPSMSVVL-CLFAAFFQARRHSEAQDLLSK 641
P+ + L + +A ++ +A +LL K
Sbjct: 321 SVPTEAGHYGVLIENYCKAEKYDKAVNLLDK 351
Score = 59.7 bits (143), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 80/368 (21%), Positives = 158/368 (42%), Gaps = 22/368 (5%)
Query: 263 VTFSNDLVKFVVDKLGDEP--KKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRF 320
+ + DL ++D G + ++++ F+ EE G V+ SY+A+ V+ R
Sbjct: 76 LEWDEDLWVLMIDSYGKKGIVQESVKLFQKMEELG-VERTIKSYDALFKVILRRGRFMMA 134
Query: 321 WKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRK 380
+ ++M ++G E T ++ F V+ A +E + P V L+
Sbjct: 135 KRYFNKMLNEGIEPTRHTFNVMIWGFFLSGKVETANXFFEDMKSRDITPDVITYNTLING 194
Query: 381 IVVSKQLDMRLFSKVVRVFRE-NGNVLTDAMLN--SVLKALISVGRMGECNKILKAMEEG 437
K+++ + R F E G + ++ +++K +SV R+ + +++ M+
Sbjct: 195 YYRVKKME-----EAERYFVEMKGRNIEPTVITYTTLIKGYVSVDRVDDALSLMEEMKGF 249
Query: 438 GFIASSNMKSKIAFRLSSAGKKDEANEFMDHM-EASGSDVGDKMWVSLIKGHCVAGDLDK 496
G ++ S + L +A K EA + M + + + +++ LI G C AG+LD
Sbjct: 250 GIKPNAITYSTLLPGLCNAEKMSEAQSILKEMVDKYIAPTDNSIFLKLISGQCKAGNLDA 309
Query: 497 AADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCV-REYDLKPWHT---- 551
AAD + M+ + AG+ +L+ YC + A + + ++ L+P T
Sbjct: 310 AADVLKAMIRLSVPTEAGH-YGVLIENYCKAEKYDKAVNLLDKLIEKDIILRPQSTLHME 368
Query: 552 --TYEELIKNLLVQRGFKDALSLLCLMKDHGF--PPFVDPFIKYVSKSGTSDDAIAFLKG 607
Y +I+ L A +L+ + G P ++ I+ S+ G+ D A LK
Sbjct: 369 PSAYNPMIEYLCDNGQTAKAETLVRQLMKLGVQEPTALNTLIRGHSQEGSPDSAFELLKI 428
Query: 608 MTSKRFPS 615
M ++ S
Sbjct: 429 MLRRKVDS 436
>gi|255570422|ref|XP_002526170.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223534547|gb|EEF36246.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 504
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 64/245 (26%), Positives = 105/245 (42%), Gaps = 9/245 (3%)
Query: 403 GNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEA 462
NV+T NS++ A G E + M G + + + LS GK EA
Sbjct: 147 ANVIT---YNSLIHASCRFGLWKEATRTFSQMVGEGILPDVVTFTTLIDHLSKKGKVQEA 203
Query: 463 NEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVN 522
+ + M G + SL+ G C+ +D A F+ MVE+ G + + L+N
Sbjct: 204 YKIFELMIKQGEAPNIVTYNSLLNGLCLHHQMDHAVRLFEVMVER-GIKIDVISYNTLIN 262
Query: 523 TYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFP 582
YC+ + +A E +L P TTY L+K L + A L M+ G
Sbjct: 263 GYCTSGKTEEAMTLFRKMQYE-ELTPSITTYTILLKALYQNGRIRTAKELFNNMQICGQS 321
Query: 583 PFVDPF---IKYVSKSGTSDDAIAFLKGMTSKRF-PSMSVVLCLFAAFFQARRHSEAQDL 638
P +D + + + K+G ++AI + + S ++ PS+ + L FQARR A ++
Sbjct: 322 PSLDTYTVLLDGLCKNGCIEEAIDVFRSLKSIKYKPSIRIYSILIGGMFQARRWESAMEI 381
Query: 639 LSKCP 643
+ P
Sbjct: 382 FDEIP 386
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 73/345 (21%), Positives = 140/345 (40%), Gaps = 14/345 (4%)
Query: 297 VKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAV 356
+K + +YN++ R + +M +G ++ T ++ S++ V+EA
Sbjct: 145 IKANVITYNSLIHASCRFGLWKEATRTFSQMVGEGILPDVVTFTTLIDHLSKKGKVQEAY 204
Query: 357 DLYEFAMACKNKPSVNCCTFLLRKIVVSKQLD--MRLFSKVVRVFRENGNVLTDAMLNSV 414
++E + P++ LL + + Q+D +RLF +V E G + N++
Sbjct: 205 KIFELMIKQGEAPNIVTYNSLLNGLCLHHQMDHAVRLFEVMV----ERGIKIDVISYNTL 260
Query: 415 LKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGS 474
+ + G+ E + + M+ S + + L G+ A E ++M+ G
Sbjct: 261 INGYCTSGKTEEAMTLFRKMQYEELTPSITTYTILLKALYQNGRIRTAKELFNNMQICGQ 320
Query: 475 DVGDKMWVSLIKGHCVAGDLDKAADCFQKMVE-KEGTSHAGYAIDLLVNTYCSKNRAIDA 533
+ L+ G C G +++A D F+ + K S Y+I L+ + + R ++
Sbjct: 321 SPSLDTYTVLLDGLCKNGCIEEAIDVFRSLKSIKYKPSIRIYSI-LIGGMF--QARRWES 377
Query: 534 CKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPF---IK 590
+ + + L P TY +I L + +A L M++ G F I+
Sbjct: 378 AMEIFDEIPTVGLVPNIVTYNIMINGLCKEGKLLEAERLFVQMEESGCEQDEISFNFIIR 437
Query: 591 YVSKSGTSDDAIAFLKGMTSKRF-PSMSVVLCLFAAFFQARRHSE 634
+ A+ FLK M K F P+ SV L L + + SE
Sbjct: 438 GFLQENQVQKAMEFLKRMREKNFSPNDSVTLMLVNLYAADAQSSE 482
Score = 50.1 bits (118), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 59/259 (22%), Positives = 103/259 (39%), Gaps = 14/259 (5%)
Query: 386 QLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNM 445
+L R+ S++ +GN T + V+ +L G + K+ + M G + +
Sbjct: 65 ELHRRMLSEIC-----SGNFFTYGL---VIDSLCKDGLAIKGLKMFREMINMGICPNVIV 116
Query: 446 KSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMV 505
S + L GK EA D M + G + SLI C G +A F +MV
Sbjct: 117 YSSLINGLCRVGKLREAVNLFDEMVSQGIKANVITYNSLIHASCRFGLWKEATRTFSQMV 176
Query: 506 EKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRG 565
EG L++ K + +A K +++ + P TY L+ L +
Sbjct: 177 -GEGILPDVVTFTTLIDHLSKKGKVQEAYKIFELMIKQGE-APNIVTYNSLLNGLCLHHQ 234
Query: 566 FKDALSLLCLMKDHGFPPFV---DPFIKYVSKSGTSDDAIAFLKGMTSKRF-PSMSVVLC 621
A+ L +M + G V + I SG +++A+ + M + PS++
Sbjct: 235 MDHAVRLFEVMVERGIKIDVISYNTLINGYCTSGKTEEAMTLFRKMQYEELTPSITTYTI 294
Query: 622 LFAAFFQARRHSEAQDLLS 640
L A +Q R A++L +
Sbjct: 295 LLKALYQNGRIRTAKELFN 313
>gi|225451352|ref|XP_002274891.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g12700, mitochondrial-like [Vitis vinifera]
Length = 577
Score = 73.9 bits (180), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 81/351 (23%), Positives = 144/351 (41%), Gaps = 22/351 (6%)
Query: 302 SSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEF 361
+++N + L E I + D+M +G++ + T ++ + A+ L
Sbjct: 130 ATFNTLIRGLCVEGKIGEVLHLFDKMIGEGFQPNVVTYGTLINGLCKVGSTSAAIRLLRS 189
Query: 362 AMACKNKPSVNCCTFLLRKIVVSKQLD--MRLFSKVVRVFRENGNVLTDAMLNSVLKALI 419
+P V T ++ + +Q+ LFS+++ G + NS++ AL
Sbjct: 190 MEQGNCQPDVVVYTSIIDSLCKDRQVTQAFNLFSEMIH----QGISPSIFTYNSLIHALC 245
Query: 420 SVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDK 479
++ +L M + + + S + L GK EA++ +D M G +
Sbjct: 246 NLCEWKHVTALLNEMVNSKIMPNVVIFSTVVDALCKEGKVMEAHDVVDMMIKRGVEPNVV 305
Query: 480 MWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDL-----LVNTYCSKNRAIDAC 534
+ +L+ GHC+ ++D+A F MV K G+A D+ L+N YC R A
Sbjct: 306 TYNALMDGHCLRSEMDEAVKVFDTMVCK------GFAPDVVSYSTLINGYCKIQRIEKAM 359
Query: 535 KFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHG-FPPFVD--PFIKY 591
R+ +L P TY L+ L +DA++L M G P FV + Y
Sbjct: 360 YLFEEMCRK-ELIPNTVTYSTLMHGLCHVGRLQDAIALFHEMVTRGQIPDFVSYCILLDY 418
Query: 592 VSKSGTSDDAIAFLKGMTSKRF-PSMSVVLCLFAAFFQARRHSEAQDLLSK 641
+ K+ D+AIA LK + P + + + +A A+DL S
Sbjct: 419 LCKNRRLDEAIALLKAIEGSNMDPDIQIYTIVIDGMCRAGELEAARDLFSN 469
Score = 49.3 bits (116), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 59/266 (22%), Positives = 109/266 (40%), Gaps = 16/266 (6%)
Query: 304 YNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAM 363
++ + L +E + V+D M +G E + T ++ R+ + EAV +++ M
Sbjct: 272 FSTVVDALCKEGKVMEAHDVVDMMIKRGVEPNVVTYNALMDGHCLRSEMDEAVKVFD-TM 330
Query: 364 ACKN-KPSVNCCTFLLRKIVVSKQLD--MRLFSKVVRVFRENGNVLTDAMLNSVLKALIS 420
CK P V + L+ ++++ M LF ++ R + ++++ L
Sbjct: 331 VCKGFAPDVVSYSTLINGYCKIQRIEKAMYLFEEMCR----KELIPNTVTYSTLMHGLCH 386
Query: 421 VGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKM 480
VGR+ + + M G I + L + DEA + +E S D ++
Sbjct: 387 VGRLQDAIALFHEMVTRGQIPDFVSYCILLDYLCKNRRLDEAIALLKAIEGSNMDPDIQI 446
Query: 481 WVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNC 540
+ +I G C AG+L+ A D F + K G + +++N C + +A K
Sbjct: 447 YTIVIDGMCRAGELEAARDLFSNLSSK-GLHPNVWTYTIMINGLCQQGLLAEASKLFGEM 505
Query: 541 VREYDLKPWHTTYEELIKNLLVQRGF 566
R+ P TY L+ RGF
Sbjct: 506 KRK-GYSPNGCTYN------LITRGF 524
>gi|334182313|ref|NP_172058.2| uncharacterized UDP-glucosyltransferase [Arabidopsis thaliana]
gi|334182315|ref|NP_001154307.2| uncharacterized UDP-glucosyltransferase [Arabidopsis thaliana]
gi|122236365|sp|Q0WVK7.1|PPR12_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g05670, mitochondrial; Flags: Precursor
gi|110741796|dbj|BAE98841.1| hypothetical protein [Arabidopsis thaliana]
gi|332189752|gb|AEE27873.1| uncharacterized UDP-glucosyltransferase [Arabidopsis thaliana]
gi|332189753|gb|AEE27874.1| uncharacterized UDP-glucosyltransferase [Arabidopsis thaliana]
Length = 741
Score = 73.9 bits (180), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 100/426 (23%), Positives = 177/426 (41%), Gaps = 21/426 (4%)
Query: 166 TYNLMLRIVGVHGLVQEFWGLVDVMKKKGYG----VASHVRNKMTEKFEKEGLESDLE-- 219
+YN+++ V G ++E L+ +M+ KGY S V N E + + +E
Sbjct: 248 SYNIVIHFVCQLGRIKEAHHLLLLMELKGYTPDVISYSTVVNGYCRFGELDKVWKLIEVM 307
Query: 220 KLKGIFATGSIDNSIEKVASRICKVVRSDIWGDDVERQ--LRDLNVTFSNDLVKFVVDKL 277
K KG+ I SI + RICK+ ++ ++ RQ L D V ++ + F K
Sbjct: 308 KRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGILPD-TVVYTTLIDGFC--KR 364
Query: 278 GDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEME 337
GD + F+ + D +Y A+ S + + K+ EM KG E +
Sbjct: 365 GDIRAASKFFYEMHSRD--ITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSV 422
Query: 338 TCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDM--RLFSKV 395
T +++ + + +K+A ++ + P+V T L+ + LD L ++
Sbjct: 423 TFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEM 482
Query: 396 VRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSS 455
++ + N+ T NS++ L G + E K++ E G A + + +
Sbjct: 483 WKIGLQP-NIFT---YNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCK 538
Query: 456 AGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGY 515
+G+ D+A E + M G + L+ G C+ G L+ M+ K G +
Sbjct: 539 SGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAK-GIAPNAT 597
Query: 516 AIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCL 575
+ LV YC +N + A ++ + + P TYE L+K R K+A L
Sbjct: 598 TFNSLVKQYCIRNN-LKAATAIYKDMCSRGVGPDGKTYENLVKGHCKARNMKEAWFLFQE 656
Query: 576 MKDHGF 581
MK GF
Sbjct: 657 MKGKGF 662
Score = 49.7 bits (117), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 93/392 (23%), Positives = 150/392 (38%), Gaps = 59/392 (15%)
Query: 237 VASRICKVVRSDI---WGDDVERQLRDLNVTFSN----DLVKFVVDKLGDEPKKALIFFR 289
VAS+ KV +S I W ER LNVT S DL+ + G +P+ +FF+
Sbjct: 130 VASKDLKVAQSLISSFW----ERP--KLNVTDSFVQFFDLLVYTYKDWGSDPRVFDVFFQ 183
Query: 290 WAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSER 349
+ G ++ +V ++M + G + +++C L R S +
Sbjct: 184 VLVDFGLLREAR--------------------RVFEKMLNYGLVLSVDSCNVYLTRLS-K 222
Query: 350 NMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDA 409
+ K A + F + P V C V S + + ++ R+ +E ++L
Sbjct: 223 DCYKTATAIIVF----REFPEVGVCW-----NVASYNIVIHFVCQLGRI-KEAHHLLLLM 272
Query: 410 MLNSVLKALISVG-------RMGECNKILK---AMEEGGFIASSNMKSKIAFRLSSAGKK 459
L +IS R GE +K+ K M+ G +S + I L K
Sbjct: 273 ELKGYTPDVISYSTVVNGYCRFGELDKVWKLIEVMKRKGLKPNSYIYGSIIGLLCRICKL 332
Query: 460 DEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDL 519
EA E M G ++ +LI G C GD+ A+ F +M ++ T
Sbjct: 333 AEAEEAFSEMIRQGILPDTVVYTTLIDGFCKRGDIRAASKFFYEMHSRDITPDV-LTYTA 391
Query: 520 LVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDH 579
+++ +C ++A K H + L+P T+ ELI KDA + M
Sbjct: 392 IISGFCQIGDMVEAGKLFHEMFCK-GLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQA 450
Query: 580 GFPPFVDPF---IKYVSKSGTSDDAIAFLKGM 608
G P V + I + K G D A L M
Sbjct: 451 GCSPNVVTYTTLIDGLCKEGDLDSANELLHEM 482
>gi|168014206|ref|XP_001759643.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162689182|gb|EDQ75555.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 1043
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 89/378 (23%), Positives = 150/378 (39%), Gaps = 14/378 (3%)
Query: 240 RICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKH 299
+I V+R W ++ +QL L + LV VV D A FF WA + H
Sbjct: 122 KINGVIRRRKWDAEMGKQLERLKFKLNPGLVCDVVVNQKD-LHLAKCFFTWAGQQDGYSH 180
Query: 300 DESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLY 359
+Y M L D ++L M +G+ + M +L F N V A++++
Sbjct: 181 TVGTYTLMIKRLAGAQETDAVVQILTAMWKEGHRISMHLLTSLLRTFGSTNNVSGALEIF 240
Query: 360 EFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGN--VLTDAMLNSV-LK 416
+ PS N F+L +V + V VF + G + DA + +
Sbjct: 241 NQMKSFGCNPSTNMYNFVLELLVKGG-----FYHSAVIVFGKLGQFRIQPDAQTFRIFVH 295
Query: 417 ALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDV 476
+ GR+ + ++ M + G + + + L +G DEA +F + M+
Sbjct: 296 SFNRSGRLDPAAEPIQEMIKSGIDPGVHTFTVLIDALVKSGNIDEACKFFNGMKNLRCSP 355
Query: 477 GDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKF 536
+ +L+ G AG L++A + F +M E + A A + L++ A AC
Sbjct: 356 NVVTYTTLVNGLAKAGRLEEACEVFVEMKENNCSPDA-IAYNTLIDGLGKAGEADMACGL 414
Query: 537 VHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFV---DPFIKYVS 593
+++ L P TY +I L +A L +K+ G P V + I +
Sbjct: 415 FKE-MKDRGLVPNLRTYNIMISVLGKAGRQPEAWQLFHDLKEQGAVPDVFTYNTLIDVLG 473
Query: 594 KSGTSDDAIAFLKGMTSK 611
K G D +A +K M K
Sbjct: 474 KGGQMDKVLAIIKEMVEK 491
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 89/418 (21%), Positives = 162/418 (38%), Gaps = 57/418 (13%)
Query: 258 LRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCI 317
LR N+ S V+ K G +P+ A F +E G V D +YN + VLG+ +
Sbjct: 427 LRTYNIMIS------VLGKAGRQPE-AWQLFHDLKEQGAVP-DVFTYNTLIDVLGKGGQM 478
Query: 318 DRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVD-LYEF-AMACKNKPSVNCCT 375
D+ ++ EM KG E C+ + E D E+ ++ K+ + T
Sbjct: 479 DKVLAIIKEMVEKGGE-----CIISRDSNAGHEGTIEGADRTVEYPSLGFKSLGEITYNT 533
Query: 376 FLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAME 435
L+ + + +D + K++ V +++ + T +++ L GR+ E +L+ ME
Sbjct: 534 -LMSAFIHNGHVDEAV--KLLEVMKKHECIPTVVTYTTLVDGLGKAGRLDEAVSLLREME 590
Query: 436 EGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLD 495
+ G S S + +++E+ D M G + +I C + D+D
Sbjct: 591 KQGCEPSVVTYSSLMASFYKRDQEEESLSLFDEMVRKGCVADVSTYSLVINCLCKSDDVD 650
Query: 496 KAADCFQKMVEKEGTSHAG----------------------------------YAIDLLV 521
+A D F +M E+ G + +++V
Sbjct: 651 QALDVFGRMKEEGMEPLLGNYKTLLSSLVKDEKIDFALQIFNELQESSLVPDTFVYNIMV 710
Query: 522 NTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGF 581
N NR +ACK V + ++ ++ P TY L+ L ++A ++ M + G
Sbjct: 711 NGLVKSNRVDEACKLV-DSMKNQNILPDLFTYTSLLDGLGKSGRLEEAFNMFTKMTEEGH 769
Query: 582 PPFVDPF---IKYVSKSGTSDDAIAFLKGMTSKR-FPSMSVVLCLFAAFFQARRHSEA 635
P V + + + K G A+ + M KR P + L + + R EA
Sbjct: 770 EPDVVAYTSLMDVLGKGGKLSHALIIFRAMAKKRCVPDVVTYSSLIDSLGKEGRVEEA 827
Score = 55.5 bits (132), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 101/496 (20%), Positives = 199/496 (40%), Gaps = 39/496 (7%)
Query: 165 KTYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRNKMTEKFEKEGLESDLEKLKGI 224
+TYN+M+ ++G G E W L +K++G N + + K G ++K+ I
Sbjct: 428 RTYNIMISVLGKAGRQPEAWQLFHDLKEQGAVPDVFTYNTLIDVLGKGG---QMDKVLAI 484
Query: 225 FATGSIDNSIEKVASRICKVV-RSDIWGDDVERQLRDLN------VTFSNDLVKFVVDKL 277
++ E + SR I G D + L +T++ + F+ +
Sbjct: 485 IKE-MVEKGGECIISRDSNAGHEGTIEGADRTVEYPSLGFKSLGEITYNTLMSAFIHNGH 543
Query: 278 GDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEME 337
DE K L + E V +Y + LG+ +D +L EM +G E +
Sbjct: 544 VDEAVKLLEVMKKHECIPTV----VTYTTLVDGLGKAGRLDEAVSLLREMEKQGCEPSVV 599
Query: 338 TCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVR 397
T ++ F +R+ +E++ L++ + V+ + ++ + S +D L V
Sbjct: 600 TYSSLMASFYKRDQEEESLSLFDEMVRKGCVADVSTYSLVINCLCKSDDVDQAL--DVFG 657
Query: 398 VFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAG 457
+E G ++L +L+ ++ +I ++E + + + + + L +
Sbjct: 658 RMKEEGMEPLLGNYKTLLSSLVKDEKIDFALQIFNELQESSLVPDTFVYNIMVNGLVKSN 717
Query: 458 KKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAI 517
+ DEA + +D M+ + SL+ G +G L++A + F KM E+ G+
Sbjct: 718 RVDEACKLVDSMKNQNILPDLFTYTSLLDGLGKSGRLEEAFNMFTKMTEE------GHEP 771
Query: 518 DLLVNT----YCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNL----LVQRG---F 566
D++ T K + + + + P TY LI +L V+ F
Sbjct: 772 DVVAYTSLMDVLGKGGKLSHALIIFRAMAKKRCVPDVVTYSSLIDSLGKEGRVEEAYYFF 831
Query: 567 KDALSLLCLMKDHGFPPFVDPFIKYVSKSGTSDDAIAFLKGMTSKRFPSMSVVL-CLFAA 625
++++S C + +D F K G D A+ + M ++ P V L +
Sbjct: 832 ENSISKGCTPNVGVYSSLIDSF----GKKGMVDRALELFEEMQRRQCPPNIVTYNNLLSG 887
Query: 626 FFQARRHSEAQDLLSK 641
+A R + A+ LL +
Sbjct: 888 LAKAGRLNVAEKLLEE 903
Score = 46.2 bits (108), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 103/480 (21%), Positives = 192/480 (40%), Gaps = 25/480 (5%)
Query: 145 DEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRNK 204
DEA + V++K + TY ++ +G G + E L+ M+K+G + +
Sbjct: 545 DEAVKLLE-VMKKHECIPTVVTYTTLVDGLGKAGRLDEAVSLLREMEKQGCEPSVVTYSS 603
Query: 205 MTEKFEKEGLESDLEKL------KGIFATGSIDNSIEKVASRICK---VVRS-DIWGDDV 254
+ F K E + L KG A S + V + +CK V ++ D++G
Sbjct: 604 LMASFYKRDQEEESLSLFDEMVRKGCVADVS---TYSLVINCLCKSDDVDQALDVFGRMK 660
Query: 255 ERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGRE 314
E + L + L V D+ D AL F +ES V D YN M + L +
Sbjct: 661 EEGMEPLLGNYKTLLSSLVKDEKID---FALQIFNELQESSLVP-DTFVYNIMVNGLVKS 716
Query: 315 DCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCC 374
+ +D K++D M+++ ++ T +L + ++EA +++ ++P V
Sbjct: 717 NRVDEACKLVDSMKNQNILPDLFTYTSLLDGLGKSGRLEEAFNMFTKMTEEGHEPDVVAY 776
Query: 375 TFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAM 434
T L+ + +L L + R + V +S++ +L GR+ E +
Sbjct: 777 TSLMDVLGKGGKLSHALI--IFRAMAKKRCVPDVVTYSSLIDSLGKEGRVEEAYYFFENS 834
Query: 435 EEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDL 494
G + + S + G D A E + M+ + +L+ G AG L
Sbjct: 835 ISKGCTPNVGVYSSLIDSFGKKGMVDRALELFEEMQRRQCPPNIVTYNNLLSGLAKAGRL 894
Query: 495 DKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYE 554
+ A ++M EK G ++L++ K +D + ++E + P T+
Sbjct: 895 NVAEKLLEEM-EKVGCVPDLVTYNILIDG-VGKMGMVDEAESYFKRMKEKGIVPDVITFT 952
Query: 555 ELIKNLLVQRGFKDALSLLCLMKDHGFPPFV---DPFIKYVSKSGTSDDAIAFLKGMTSK 611
LI++L +A L M++ G+ P V + I + ++G +A M K
Sbjct: 953 SLIESLGKVDKLLEACELFDSMEEEGYNPSVVTYNVLIDILGRAGKVHEAAMIFHEMKVK 1012
>gi|297723955|ref|NP_001174341.1| Os05g0313900 [Oryza sativa Japonica Group]
gi|255676233|dbj|BAH93069.1| Os05g0313900 [Oryza sativa Japonica Group]
Length = 1070
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 73/263 (27%), Positives = 108/263 (41%), Gaps = 18/263 (6%)
Query: 282 KKALIFFRWAEESGFVKHDESSYNAMASVLGRED--CIDRFWKVLDEMRSKGYEMEMETC 339
+ AL FFRWA + +H S NAMAS+L R +DR R +
Sbjct: 85 RHALDFFRWAADQPGFRHSCYSLNAMASLLPRHQRAHLDRLAADAISARCLMTPGALGFL 144
Query: 340 VKVLGRFSERNMVKEAVDLYEFAMAC-KNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRV 398
++ LG + A D + C N + NC L K + RL V R
Sbjct: 145 LRCLGAAGLPDTAVRAFDAARASFGCTPNSYTYNCLLDALAKAGRADDAQARLREMVARC 204
Query: 399 FRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGK 458
+G+V L S+L+ + GR + N + + M E G++ ++ + + S GK
Sbjct: 205 --GDGSV-DKYTLTSLLRCYCNAGRPDDANDVFQRMSELGWV-DEHVLTTLMVAFSKWGK 260
Query: 459 KDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAID 518
D A E + MEA G + +K L+ G G +DKA D F KMV G+ +D
Sbjct: 261 VDGAVELLGSMEALGMRLSEKTLSVLVHGFTKQGRVDKAMDMFAKMVSY------GFVVD 314
Query: 519 L-----LVNTYCSKNRAIDACKF 536
L L+ C + A K
Sbjct: 315 LAMYSVLIEGLCQQKDIARAVKL 337
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 93/478 (19%), Positives = 188/478 (39%), Gaps = 63/478 (13%)
Query: 162 LSSKTYNLMLRIVGVHGLVQEFWGLVDVMKKK-GYGVASHVRNKMTEKFEKEGLESDLE- 219
++ +LR +G GL D + G S+ N + + K G D +
Sbjct: 136 MTPGALGFLLRCLGAAGLPDTAVRAFDAARASFGCTPNSYTYNCLLDALAKAGRADDAQA 195
Query: 220 KLKGIFA---TGSIDN-SIEKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVD 275
+L+ + A GS+D ++ + C R D +DV +++ +L + L +V
Sbjct: 196 RLREMVARCGDGSVDKYTLTSLLRCYCNAGRPDD-ANDVFQRMSELGWVDEHVLTTLMV- 253
Query: 276 KLGDEPKKALIFFRWAEESGFV-----------KHDESSYNAMASVLGREDCIDRFWKVL 324
F +W + G V + E + + + ++ +D+ +
Sbjct: 254 ----------AFSKWGKVDGAVELLGSMEALGMRLSEKTLSVLVHGFTKQGRVDKAMDMF 303
Query: 325 DEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVS 384
+M S G+ +++ ++ ++ + AV L++ + P V LL+K++ +
Sbjct: 304 AKMVSYGFVVDLAMYSVLIEGLCQQKDIARAVKLFKEMKSSGVAPDVR----LLKKVIEA 359
Query: 385 --KQLDMRLFSKVVRVFRENGNVLTDA----MLNSVLKALISVGRMGECNKILKAMEEGG 438
++ D F+ + EN L + N VL+ L+ G + ++L++M GG
Sbjct: 360 FCREGD---FAVIGPFINENAEYLKSGSVVPLYNVVLEELVHCGEVEAAYQLLRSMVCGG 416
Query: 439 FIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAA 498
++++ M H+ D + ++ G C LD A
Sbjct: 417 QAVNNDVA---------------GGAHMLHIREDAKPNSDSFNI-VVCGLCKVKKLDMAL 460
Query: 499 DCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIK 558
+ M+ G + L++ C+ +R ++ + N +++ L P TY L
Sbjct: 461 ALTKDMISL-GCKGKILMFNDLIHELCNMDR-LEEGYGIFNQMKDLGLTPSEFTYNSLFY 518
Query: 559 NLLVQRGFKDALSLLCLMKDHGFPPFVDPFIKYVSK---SGTSDDAIAFLKGMTSKRF 613
+ ++ K AL LL M+ +G PP++ + V + SG +A+ FL GM F
Sbjct: 519 GICRRKDPKAALDLLREMQTNGHPPWIKNCTEMVQQLCFSGRVTEAVQFLDGMLQIGF 576
Score = 48.9 bits (115), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 56/255 (21%), Positives = 103/255 (40%), Gaps = 19/255 (7%)
Query: 383 VSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIAS 442
+ ++ D + ++R + NG+ +++ L GR+ E + L M + GF+
Sbjct: 520 ICRRKDPKAALDLLREMQTNGHPPWIKNCTEMVQQLCFSGRVTEAVQFLDGMLQIGFLPD 579
Query: 443 SNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVS-------LIKGHCVAGDLD 495
S + + G+ D+A D+ K ++ LI G + LD
Sbjct: 580 IVTYSAAMNGMCNTGEVDDALHLF-------RDISCKYYLPDVVAHNILINGFRKSSKLD 632
Query: 496 KAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEE 555
+A ++M+EK G + +L+++ C R A ++ V E + +P TY
Sbjct: 633 EAQKIMEEMLEK-GLFPSVVTYNLMIDVCCKTGRIEKAISYLDKMVYE-EKQPTVITYTS 690
Query: 556 LIKNLLVQRGFKDALSLLCLMKDHGFPP---FVDPFIKYVSKSGTSDDAIAFLKGMTSKR 612
LI +A+ L C M++ G P FI + K G + A+ + + M +K
Sbjct: 691 LIDGFCSAGRPDEAIKLWCEMREKGCAPNNIAYTAFINGLRKCGRIETALTYFEEMVTKG 750
Query: 613 FPSMSVVLCLFAAFF 627
F + L F F
Sbjct: 751 FELDTFSLLYFINFL 765
Score = 41.6 bits (96), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 54/269 (20%), Positives = 108/269 (40%), Gaps = 11/269 (4%)
Query: 301 ESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYE 360
E +YN++ + R +L EM++ G+ ++ C +++ + V EAV +
Sbjct: 510 EFTYNSLFYGICRRKDPKAALDLLREMQTNGHPPWIKNCTEMVQQLCFSGRVTEAVQFLD 569
Query: 361 FAMACKNKPSVNCCTFLLRKIVVSKQLD--MRLFSKVVRVFRENGNVLTDAMLNSVLKAL 418
+ P + + + + + ++D + LF + + V + ++N K+
Sbjct: 570 GMLQIGFLPDIVTYSAAMNGMCNTGEVDDALHLFRDISCKYYLPDVVAHNILINGFRKS- 628
Query: 419 ISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGD 478
++ E KI++ M E G S + + G+ ++A ++D M
Sbjct: 629 ---SKLDEAQKIMEEMLEKGLFPSVVTYNLMIDVCCKTGRIEKAISYLDKMVYEEKQPTV 685
Query: 479 KMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVH 538
+ SLI G C AG D+A + +M EK G + A +N R A +
Sbjct: 686 ITYTSLIDGFCSAGRPDEAIKLWCEMREK-GCAPNNIAYTAFINGLRKCGRIETALTYFE 744
Query: 539 NCV-REYDLKPWHTTYEELIKNLLVQRGF 566
V + ++L + Y N L+ G+
Sbjct: 745 EMVTKGFELDTFSLLY---FINFLISNGY 770
>gi|297842227|ref|XP_002888995.1| hypothetical protein ARALYDRAFT_476621 [Arabidopsis lyrata subsp.
lyrata]
gi|297334836|gb|EFH65254.1| hypothetical protein ARALYDRAFT_476621 [Arabidopsis lyrata subsp.
lyrata]
Length = 863
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 74/358 (20%), Positives = 145/358 (40%), Gaps = 7/358 (1%)
Query: 282 KKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVK 341
+++L F++ + + K +E Y M S+LGRE +D+ +V DEM S+G + +
Sbjct: 122 QRSLRLFKYMQRQIWCKPNEHIYTIMISLLGREGLLDKCLEVFDEMPSQGVSRSVFSYTA 181
Query: 342 VLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRE 401
++ + + +++L + K PS+ ++ LD + R
Sbjct: 182 LINAYGRNGRYETSLELLDRMKNDKISPSILTYNTVINA-CARGGLDWEGLLGLFAEMRH 240
Query: 402 NGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDE 461
G N++L A G E + + M +GG + S + + ++
Sbjct: 241 EGIQPDIVTYNTLLSACAIRGLGDEAEMVFRTMNDGGIVPDLTTYSHLVETFGKLRRLEK 300
Query: 462 ANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLV 521
++ + M + GS + L++ + +G + +A F +M + G + +L+
Sbjct: 301 VSDLLSEMASGGSLPDITSYNVLLEAYAKSGSIKEAMGVFHQM-QAAGCTPNANTYSVLL 359
Query: 522 NTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGF 581
N + R D + ++ + P TY LI+ FK+ ++L M +
Sbjct: 360 NLFGQSGRYDDVRQLFLE-MKSSNTDPDAATYNILIEVFGEGGYFKEVVTLFHDMVEENI 418
Query: 582 PPFVDPF---IKYVSKSGTSDDAIAFLKGMTSKRF-PSMSVVLCLFAAFFQARRHSEA 635
P ++ + I K G +DA L+ MT+ PS + AF QA + EA
Sbjct: 419 EPDMETYEGIIFACGKGGLHEDARKILQYMTANDIVPSSKAYTGVIEAFGQAALYEEA 476
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 78/370 (21%), Positives = 147/370 (39%), Gaps = 22/370 (5%)
Query: 149 RFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRNKMTEK 208
R F ++ + + + Y +M+ ++G GL+ + + D M +G + +
Sbjct: 126 RLFKYMQRQIWCKPNEHIYTIMISLLGREGLLDKCLEVFDEMPSQGVSRSVFSYTALINA 185
Query: 209 FEKEG-LESDLEKLKGIFATGSIDNSIEKVASRICKVVRSDI-W----GDDVERQLRDLN 262
+ + G E+ LE L + I SI + I R + W G E + +
Sbjct: 186 YGRNGRYETSLELLDRM-KNDKISPSILTYNTVINACARGGLDWEGLLGLFAEMRHEGIQ 244
Query: 263 ---VTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDR 319
VT++ L + LGDE A + FR + G V D ++Y+ + G+ +++
Sbjct: 245 PDIVTYNTLLSACAIRGLGDE---AEMVFRTMNDGGIVP-DLTTYSHLVETFGKLRRLEK 300
Query: 320 FWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLR 379
+L EM S G ++ + +L +++ +KEA+ ++ A P+ N + LL
Sbjct: 301 VSDLLSEMASGGSLPDITSYNVLLEAYAKSGSIKEAMGVFHQMQAAGCTPNANTYSVLLN 360
Query: 380 KIVVSKQLDMRLFSKVVRVFRENGNVLTD---AMLNSVLKALISVGRMGECNKILKAMEE 436
S + D V ++F E + TD A N +++ G E + M E
Sbjct: 361 LFGQSGRYD-----DVRQLFLEMKSSNTDPDAATYNILIEVFGEGGYFKEVVTLFHDMVE 415
Query: 437 GGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDK 496
I F G ++A + + +M A+ K + +I+ A ++
Sbjct: 416 ENIEPDMETYEGIIFACGKGGLHEDARKILQYMTANDIVPSSKAYTGVIEAFGQAALYEE 475
Query: 497 AADCFQKMVE 506
A F M E
Sbjct: 476 ALVAFNTMHE 485
>gi|356517404|ref|XP_003527377.1| PREDICTED: pentatricopeptide repeat-containing protein At5g42310,
mitochondrial-like [Glycine max]
Length = 696
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 106/520 (20%), Positives = 210/520 (40%), Gaps = 43/520 (8%)
Query: 121 LELSGVVFTHEMVLKVLKNLESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLV 180
L+ + F++E++ +L N + + + + L + + L+ TYN ++ +G V
Sbjct: 145 LQKHNLCFSYELLYSILIN---ALGRSEKLYEAFLLSQRQVLTPLTYNALIGACARNGDV 201
Query: 181 QEFWGLVDVMKKKGYGVASHVRNKMTEKFEKEGLESDLEKLKGIFATGSIDNSIEKVASR 240
++ L+ M++ GY + D I + N K+ S
Sbjct: 202 EKALNLMSKMRRDGY-------------------QPDFVNYSSIIQYLTRSN---KIDSP 239
Query: 241 ICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHD 300
I + + ++I D +E ++ ND++ K GD P +A+ F A+ +G +
Sbjct: 240 ILQKLYTEIETDKIE-----IDGHLMNDII-LGFSKAGD-PTRAMRFLAMAQSNG-LNPK 291
Query: 301 ESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYE 360
S+ A+ LG + +E+R G E +L + + +K+A +
Sbjct: 292 PSTLVAVILALGNSGRTHEAEALFEEIRENGSEPRTRAYNALLKGYVKTGSLKDAEFVVS 351
Query: 361 FAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNS-VLKALI 419
KP + L+ + + + +++V E NV ++ + S +L +
Sbjct: 352 EMEKAGVKPDEQTYSLLIDAYAHAGRWES---ARIVLKEMEASNVEPNSYVYSRILASYR 408
Query: 420 SVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDK 479
G + ++LK M+ G + + + D A + M + G
Sbjct: 409 DKGEWQKSFQVLKDMKSNGVQPDRHFYNVMIDTFGKYNCLDHAMATFERMLSEGIRPDTV 468
Query: 480 MWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHN 539
W +LI HC +G + A + F +M ++ G S ++++N+ + R F+
Sbjct: 469 TWNTLINCHCKSGRHNMAEELFGEM-QQRGYSPCITTYNIMINSMGEQQRWEQVSLFLSK 527
Query: 540 CVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPP---FVDPFIKYVSKSG 596
++ L P TY L+ F DA+ L ++K GF P + I ++ G
Sbjct: 528 -MQSQGLLPNSITYTTLVDVYGKSGRFSDAIECLEVLKSTGFKPTSTMYNALINAYAQRG 586
Query: 597 TSDDAIAFLKGMTSKRF-PSMSVVLCLFAAFFQARRHSEA 635
S+ A+ + MT++ PS+ + L AF + RR +EA
Sbjct: 587 LSELAVNAFRLMTTEGLTPSLLALNSLINAFGEDRRDAEA 626
>gi|224111048|ref|XP_002315730.1| predicted protein [Populus trichocarpa]
gi|222864770|gb|EEF01901.1| predicted protein [Populus trichocarpa]
Length = 760
Score = 73.6 bits (179), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 94/467 (20%), Positives = 177/467 (37%), Gaps = 97/467 (20%)
Query: 233 SIEKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAE 292
S EK+ IC+++ + W ++ +R L F + LV V+ +P AL FFRW E
Sbjct: 81 SPEKLEDIICRMMANRDWTTRLQNSIRALVPEFDHSLVYNVLHG-ARKPDHALQFFRWVE 139
Query: 293 ESGFVKHDESSYNAMASVLGREDCIDRF-WKVLDEMRSKGYEMEMETCVKVLGRFSERNM 351
+G ++HD ++ + +LGR ++ VL++M KG+E++ + V ++ + + +
Sbjct: 140 RAGLIQHDRETHMKIIQILGRYSMLNHARCIVLEDMPKKGFELDEDMFVLLIDSYGKAGI 199
Query: 352 VKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDM--RLFSKV----VRVFRENGNV 405
V+E+V ++ + SV L + IV + M R F+K+ + R NV
Sbjct: 200 VQESVKMFSKMKELGVERSVKSYNALFKVIVRKGRYMMAKRFFNKMLDEGIGPTRHTYNV 259
Query: 406 LTDAML---------------------------NSVLKALISVGRMGECNKILKAMEEGG 438
L N+++ RM E K+ M+
Sbjct: 260 LIWGFFLSMRLRTAVRFYEDMKVRGISPDVVTYNTMINGYYRHKRMEEAEKLFAEMKAKD 319
Query: 439 FIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAA 498
+ + + + + ++ ++ M++ G + + +L+ C AG + +A
Sbjct: 320 IAPTVISYTTMIKGYFAVDRINDGLRLLEEMKSVGIKPNNVTYTTLLPDLCDAGKMTEAK 379
Query: 499 DCFQKMVE-------------------KEG-----------------TSHAGYAIDLLVN 522
D ++MV K G S AG+ +L+
Sbjct: 380 DILKEMVRRRIAPKDNSIFLKLLNSQCKAGDLKAAVDVLDGMIKLSIPSEAGH-YGVLIE 438
Query: 523 TYCSKNRAIDACKFV----------------------HNCVREYDLKPWHTTYEELIKNL 560
+C A KFV +N V +Y T E++
Sbjct: 439 NFCKAEEYDQAVKFVDKLIENDIILRPQSTLEMESGAYNPVIQYLCSHGQTGKAEILFRQ 498
Query: 561 LVQRGFKDALS---LLCLMKDHGFPPFVDPFIKYVSKSGTSDDAIAF 604
L+++G +D L+ L+C G P +K + + G DA A+
Sbjct: 499 LLKKGVEDPLAFNNLICGHAKEGTPDSAFEILKIMGRKGIPRDADAY 545
>gi|356505993|ref|XP_003521773.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04760,
chloroplastic-like [Glycine max]
Length = 570
Score = 73.6 bits (179), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 72/305 (23%), Positives = 134/305 (43%), Gaps = 14/305 (4%)
Query: 283 KALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKV 342
KA+ E G D +YNA+ + R + ID ++VLD M++KG+ ++ T +
Sbjct: 110 KAIQVMHILENHG--HPDLIAYNAIITGFCRANRIDSAYQVLDRMKNKGFSPDIVTYNIL 167
Query: 343 LGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLD--MRLFSKVVRVFR 400
+G R M+ A++ + KP+V T L+ ++ +D M+L +++ +
Sbjct: 168 IGSLCSRGMLDSALEFKNQLLKENCKPTVVTYTILIEATLLQGGIDEAMKLLDEMLEI-- 225
Query: 401 ENGNVLTDAML-NSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFR-LSSAGK 458
N+ D NS+++ + G + +I+ ++ G+ A + I R L + GK
Sbjct: 226 ---NLQPDMFTYNSIIRGMCREGYVDRAFQIISSISSKGY-APDVITYNILLRGLLNQGK 281
Query: 459 KDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAID 518
+ E M M A G + + LI C G +++ + M +K+G GY D
Sbjct: 282 WEAGYELMSDMVARGCEANVVTYSVLISSVCRDGKVEEGVGLLKDM-KKKGLKPDGYCYD 340
Query: 519 LLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKD 578
L+ C + R +D V + + P Y ++ L Q+ +ALS+ + +
Sbjct: 341 PLIAALCKEGR-VDLAIEVLDVMISDGCVPDIVNYNTILACLCKQKRADEALSIFEKLGE 399
Query: 579 HGFPP 583
G P
Sbjct: 400 VGCSP 404
Score = 45.4 bits (106), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 68/313 (21%), Positives = 114/313 (36%), Gaps = 42/313 (13%)
Query: 367 NKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGE 426
+KP V CT L+ + SK +D + +V+ + +G+ A N+++ R+
Sbjct: 88 HKPDVVLCTKLIHGLFTSKTIDKAI--QVMHILENHGHPDLIAY-NAIITGFCRANRIDS 144
Query: 427 CNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIK 486
++L M+ GF + + L S G D A EF + + + LI+
Sbjct: 145 AYQVLDRMKNKGFSPDIVTYNILIGSLCSRGMLDSALEFKNQLLKENCKPTVVTYTILIE 204
Query: 487 GHCVAGDLDKAADCFQKMVEKE-------------GTSHAGYAID---LLVNTYCSKNRA 530
+ G +D+A +M+E G GY +D ++++ SK A
Sbjct: 205 ATLLQGGIDEAMKLLDEMLEINLQPDMFTYNSIIRGMCREGY-VDRAFQIISSISSKGYA 263
Query: 531 IDACKFVHNCVREYDLKPWH------------------TTYEELIKNLLVQRGFKDALSL 572
D + + W TY LI ++ ++ + L
Sbjct: 264 PDVITYNILLRGLLNQGKWEAGYELMSDMVARGCEANVVTYSVLISSVCRDGKVEEGVGL 323
Query: 573 LCLMKDHGFPP---FVDPFIKYVSKSGTSDDAIAFLKGMTSKR-FPSMSVVLCLFAAFFQ 628
L MK G P DP I + K G D AI L M S P + + A +
Sbjct: 324 LKDMKKKGLKPDGYCYDPLIAALCKEGRVDLAIEVLDVMISDGCVPDIVNYNTILACLCK 383
Query: 629 ARRHSEAQDLLSK 641
+R EA + K
Sbjct: 384 QKRADEALSIFEK 396
Score = 43.1 bits (100), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 74/315 (23%), Positives = 122/315 (38%), Gaps = 45/315 (14%)
Query: 297 VKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGY--------------------EMEM 336
++ D +YN++ + RE +DR ++++ + SKGY E
Sbjct: 227 LQPDMFTYNSIIRGMCREGYVDRAFQIISSISSKGYAPDVITYNILLRGLLNQGKWEAGY 286
Query: 337 ETCVKVLGRFSERNMV---------------KEAVDLYEFAMACKNKPSVNCCTFLLRKI 381
E ++ R E N+V +E V L + KP C L+ +
Sbjct: 287 ELMSDMVARGCEANVVTYSVLISSVCRDGKVEEGVGLLKDMKKKGLKPDGYCYDPLIAAL 346
Query: 382 VVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIA 441
++D+ + +V+ V +G V N++L L R E I + + E G
Sbjct: 347 CKEGRVDLAI--EVLDVMISDGCVPDIVNYNTILACLCKQKRADEALSIFEKLGEVGCSP 404
Query: 442 SSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCF 501
+++ + + L S G K A + M G D + SLI C G +D+A +
Sbjct: 405 NASSYNSMFSALWSTGHKVRALGMILEMLDKGVDPDGITYNSLISCLCRDGMVDEAIELL 464
Query: 502 QKMVEKEGT----SHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELI 557
M E E + S Y I LL C +R DA + + V + +P TTY LI
Sbjct: 465 VDM-EMESSECKPSVVSYNIVLL--GLCKVSRVSDAIEVLAAMV-DKGCRPNETTYTFLI 520
Query: 558 KNLLVQRGFKDALSL 572
+ + DA L
Sbjct: 521 EGIGFGGCLNDARDL 535
>gi|302756537|ref|XP_002961692.1| hypothetical protein SELMODRAFT_76597 [Selaginella moellendorffii]
gi|300170351|gb|EFJ36952.1| hypothetical protein SELMODRAFT_76597 [Selaginella moellendorffii]
Length = 1056
Score = 73.2 bits (178), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 117/477 (24%), Positives = 193/477 (40%), Gaps = 38/477 (7%)
Query: 116 DISKQLELSGVVFTHEMVLKVLKNLESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVG 175
D+ K+ S V T+ ++LK L L P EA R + E + T++ +++ +
Sbjct: 334 DVMKESGCSADVITYNILLKGLCKLRRIP-EAYRHVELMRRTEGCSPNVVTFSTLIQGLC 392
Query: 176 VHGLVQEFWGLVDVMKKKGYGVASHVRNKMTEKFEKEGL--ESDLEKLKGIFATGSIDNS 233
G V + W + + M V N+ T F EGL D +L+ F
Sbjct: 393 NAGRVNQAWEVYERM----VAVEGISPNRFTYAFLLEGLCKAGDSRRLEQCF-------- 440
Query: 234 IEKVASRICKVVRS-DIWGDDVE----RQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFF 288
E++ R + S I +V+ + R VT+ N LV + K G + AL
Sbjct: 441 -EQMLEREWRSSSSWPIHSPEVDFLMVQVCRPTLVTY-NTLVTGL-SKSG-MVRDALGLL 496
Query: 289 RWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSE 348
+ ESG D ++N++ L +E I V +G + T ++ S+
Sbjct: 497 EFMIESGL-SPDVITFNSVLDGLCKEQRILDAHNVFKRALERGCRPNVVTYSTLIDGLSK 555
Query: 349 RNMVKEAVDLYE--FAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRE--NGN 404
+ EA+ L + C+ N T+ VV L + V V R+ +
Sbjct: 556 MAKMDEALQLLAKMVELGCR----ANTVTY---STVVDGLLKVGRMEDAVVVLRQMRDAG 608
Query: 405 VLTDAML-NSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEAN 463
L DA+ N+++ R+ E +L+ M E GF S + + L +G+ DEA
Sbjct: 609 CLPDAVTYNTLIDGFFKRQRLREAVGLLREMLEAGFHPSVVTYTTLCHGLCRSGRFDEAV 668
Query: 464 EFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNT 523
E +D+M A G + S++ G C AG + +A F+KM E + A L++
Sbjct: 669 EILDYMAARGCAPNAITYSSIVDGLCKAGRVTEALGYFEKMARDEVVAPHVIAYSALIDG 728
Query: 524 YCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHG 580
C R +A +F+ +R + P T+ LI L L L C M + G
Sbjct: 729 LCKAGRIDEAYEFLERMIRAGRI-PDVVTFSILINGLCDAGRIDTGLELFCGMAERG 784
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 78/312 (25%), Positives = 134/312 (42%), Gaps = 43/312 (13%)
Query: 287 FFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRF 346
FF ++G V + +Y+A+ L + +D L +R K + M +L
Sbjct: 233 FFDSMPQTG-VSPNTVTYDALIDGLCKAGKLD---IALGLLRDKNSQAGMFAFSSLLHGL 288
Query: 347 SERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVL 406
+ + ++EA+ L + AM C P+V C L+ + ++++D ++ V +E+G
Sbjct: 289 CQAHRLEEAIQLLK-AMPCV--PNVVCFNSLMNGLCQARRVDEAF--ELFDVMKESGCSA 343
Query: 407 TDAMLNSVLKALISVGRMGECNKILKAME--EGGFIASSNMK--SKIAFRLSSAGKKDEA 462
N +LK L + R+ E + ++ M EG S N+ S + L +AG+ ++A
Sbjct: 344 DVITYNILLKGLCKLRRIPEAYRHVELMRRTEG---CSPNVVTFSTLIQGLCNAGRVNQA 400
Query: 463 NEFMDHMEA-SGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAI---- 517
E + M A G + L++G C AGD + CF++M+E+E S + + I
Sbjct: 401 WEVYERMVAVEGISPNRFTYAFLLEGLCKAGDSRRLEQCFEQMLEREWRSSSSWPIHSPE 460
Query: 518 -DLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLM 576
D L+ C +P TY L+ L +DAL LL M
Sbjct: 461 VDFLMVQVC---------------------RPTLVTYNTLVTGLSKSGMVRDALGLLEFM 499
Query: 577 KDHGFPPFVDPF 588
+ G P V F
Sbjct: 500 IESGLSPDVITF 511
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 99/491 (20%), Positives = 191/491 (38%), Gaps = 36/491 (7%)
Query: 166 TYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRNKMTEKFEKEGLESDLEKL-KGI 224
TYN ++ + G+V++ GL++ M + G N + + KE D + K
Sbjct: 475 TYNTLVTGLSKSGMVRDALGLLEFMIESGLSPDVITFNSVLDGLCKEQRILDAHNVFKRA 534
Query: 225 FATGSIDNSI--EKVASRICKVVRSD----IWGDDVERQLRDLNVTFSNDLVKFVVDKL- 277
G N + + + K+ + D + VE R VT+S VVD L
Sbjct: 535 LERGCRPNVVTYSTLIDGLSKMAKMDEALQLLAKMVELGCRANTVTYST-----VVDGLL 589
Query: 278 -GDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEM 336
+ A++ R ++G + D +YN + + + +L EM G+ +
Sbjct: 590 KVGRMEDAVVVLRQMRDAGCLP-DAVTYNTLIDGFFKRQRLREAVGLLREMLEAGFHPSV 648
Query: 337 ETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRL--FSK 394
T + EAV++ ++ A P+ + ++ + + ++ L F K
Sbjct: 649 VTYTTLCHGLCRSGRFDEAVEILDYMAARGCAPNAITYSSIVDGLCKAGRVTEALGYFEK 708
Query: 395 VVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLS 454
+ R +V+ ++++ L GR+ E + L+ M G I S + L
Sbjct: 709 MARDEVVAPHVIA---YSALIDGLCKAGRIDEAYEFLERMIRAGRIPDVVTFSILINGLC 765
Query: 455 SAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAG 514
AG+ D E M G + ++I +C+ G+ A ++M + G +
Sbjct: 766 DAGRIDTGLELFCGMAERGCKADIYAYNAMINAYCLKGEFSAAYALLEEM-KTHGIAKNT 824
Query: 515 YAIDLLVNTYCSKNRAIDACKFVH----NCVREYDLKPWHTTYEELIKNLLVQRGFKDAL 570
+++ C +R +A + H +C E +Y LI +L+ R + AL
Sbjct: 825 VTHGIVIKALCGNDRIDEAVSYFHSIPEDCRDE-------ISYNTLITSLVASRRSEQAL 877
Query: 571 SLLCLMKDHGFPPFVDPFIKYVS---KSGTSDDAIAFLKGMTSK-RFPSMSVVLCLFAAF 626
LL M G P ++ + K+G+ + A L+ M S+ P + + +
Sbjct: 878 ELLRAMVADGGSPDACNYMTVMDGLFKAGSPEVAAKLLQEMRSRGHSPDLRTYTIMISGL 937
Query: 627 FQARRHSEAQD 637
+A++ A D
Sbjct: 938 SKAKQLPLACD 948
Score = 52.4 bits (124), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 80/335 (23%), Positives = 130/335 (38%), Gaps = 52/335 (15%)
Query: 284 ALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVL 343
A FR A + GF + +Y+ + L R++ +D+ K+L+EM +G T ++
Sbjct: 20 AFTAFRKAIQFGF-RPTVVTYSTVIDGLCRDNEVDKGCKLLEEMAGRGCAPNAVTYNTLV 78
Query: 344 GRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENG 403
+ KEA L E A P + TF L + K+ ++ +VV + G
Sbjct: 79 NALLGQGRAKEAFSLLERMAANGCPPEL--ITFGLIIKGLCKEGEIEAAFRVVDEMVDRG 136
Query: 404 NVLTDAMLNSVLKALISVGRMGEC-------------------NKILKAMEEGGFIASSN 444
V + +L AL +GR+ E N ++ + + G + ++
Sbjct: 137 FVPDVEIHTVLLHALCELGRVDEAWFFFQQVLLIGFTPDAVTYNTMVDGLYKAGRLEAAG 196
Query: 445 M---------KSKIAFR-------LSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGH 488
M S F LS AG A EF D M +G + +LI G
Sbjct: 197 MVLQLLAESFSSPTVFTFTIAVDGLSKAGNLTGAYEFFDSMPQTGVSPNTVTYDALIDGL 256
Query: 489 CVAGDLDKAADCFQKMVEKEGTSHAG-YAIDLLVNTYCSKNRAIDACKFVHN--CVREYD 545
C AG LD A ++ S AG +A L++ C +R +A + + CV
Sbjct: 257 CKAGKLDIALGLL-----RDKNSQAGMFAFSSLLHGLCQAHRLEEAIQLLKAMPCV---- 307
Query: 546 LKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHG 580
P + L+ L R +A L +MK+ G
Sbjct: 308 --PNVVCFNSLMNGLCQARRVDEAFELFDVMKESG 340
Score = 49.7 bits (117), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 80/374 (21%), Positives = 148/374 (39%), Gaps = 59/374 (15%)
Query: 241 ICKVVRSDIWGDDVERQLRDLNVTFSNDLVKF--VVDKLGDEPK--KALIFFRWAEESGF 296
+CK R D + +ER +R + D+V F +++ L D + L F E G
Sbjct: 729 LCKAGRIDEAYEFLERMIRAGRIP---DVVTFSILINGLCDAGRIDTGLELFCGMAERG- 784
Query: 297 VKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAV 356
K D +YNAM + + + +L+EM++ G T V+ + + EAV
Sbjct: 785 CKADIYAYNAMINAYCLKGEFSAAYALLEEMKTHGIAKNTVTHGIVIKALCGNDRIDEAV 844
Query: 357 D-LYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVL 415
+ C+++ S N L+ +V S++ + L +L
Sbjct: 845 SYFHSIPEDCRDEISYNT---LITSLVASRRSEQAL---------------------ELL 880
Query: 416 KALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSD 475
+A+++ G + + M+ L AG + A + + M + G
Sbjct: 881 RAMVADGGSPDACNYMTVMDG----------------LFKAGSPEVAAKLLQEMRSRGHS 924
Query: 476 VGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACK 535
+ + +I G A L A D F++M+ K A L++ +C ++ DA K
Sbjct: 925 PDLRTYTIMISGLSKAKQLPLACDYFEEMLRKNLKPDA-IVYSSLIDAFCKADKVDDAWK 983
Query: 536 FVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPFIK----Y 591
+ R ++P T Y ++ +L RG AL ++ MK P + + Y
Sbjct: 984 LL----RSSGIEPTITMYSTMVDSLCKNRGTDKALEVIREMKSKNCEPGIHIWTSLATAY 1039
Query: 592 VSKSGTSDDAIAFL 605
V++ G D+A+ +
Sbjct: 1040 VAE-GRVDEAVKLV 1052
Score = 46.6 bits (109), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 44/156 (28%), Positives = 64/156 (41%), Gaps = 6/156 (3%)
Query: 484 LIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVRE 543
LI G C AG + A F+K ++ G +++ C N CK + +
Sbjct: 7 LINGLCKAGRVCDAFTAFRKAIQF-GFRPTVVTYSTVIDGLCRDNEVDKGCKLLEE-MAG 64
Query: 544 YDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPF---IKYVSKSGTSDD 600
P TY L+ LL Q K+A SLL M +G PP + F IK + K G +
Sbjct: 65 RGCAPNAVTYNTLVNALLGQGRAKEAFSLLERMAANGCPPELITFGLIIKGLCKEGEIEA 124
Query: 601 AIAFLKGMTSKRF-PSMSVVLCLFAAFFQARRHSEA 635
A + M + F P + + L A + R EA
Sbjct: 125 AFRVVDEMVDRGFVPDVEIHTVLLHALCELGRVDEA 160
>gi|296081511|emb|CBI20034.3| unnamed protein product [Vitis vinifera]
Length = 596
Score = 73.2 bits (178), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 99/403 (24%), Positives = 162/403 (40%), Gaps = 54/403 (13%)
Query: 215 ESDLEKLKGIFATGSIDNSIE-KVASRICKVVRSDIWGD-DVERQLRDLNVTFSNDLVKF 272
E D + + G F ++++ + + SR+C+V+ D ++E L + NV S+ LV
Sbjct: 136 EPDGDNVGGDFDEVNVNSGADPEEVSRVCRVIDELFALDRNMEAVLDECNVDLSHALVVG 195
Query: 273 VVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGY 332
V+++ K A FF WA + H+ +YNAM SVLGR + +L EM KG
Sbjct: 196 VLERFKHARKPAFRFFCWAGQKAGFTHNSRTYNAMMSVLGRTRQFESMMGMLGEMGEKGL 255
Query: 333 EMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSK--QLDMR 390
+ MET + F+ K+AV ++E V+ LL + +K +
Sbjct: 256 -LTMETFSIAIKAFAAAKERKKAVGVFELMKRYNFDAGVDTINCLLDNLGRAKLGKEAQA 314
Query: 391 LFSKVVRVFRENGNVLTDAMLNS--VLKALISVGRMGECNKILKAMEEGGFIASSNMKSK 448
LF K+ F N T +LN +K L+ GR N+++ + IA M
Sbjct: 315 LFEKLEDRFTPNLRTYT-VLLNGWCRIKNLVEAGRT--WNEMIDKGFKPDIIAHHTMLEG 371
Query: 449 IAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKE 508
L KK +A + + M+A G + + LI+ C + +A + F
Sbjct: 372 ----LLKCKKKSDAIKLFEVMKAKGPSPNVRTYTILIRDLCKQMKMQEAVEYF------- 420
Query: 509 GTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKD 568
D +V++ C + A+ C LI Q+
Sbjct: 421 ---------DEMVDSGCQPDAAVYTC---------------------LITGFGNQKKMDK 450
Query: 569 ALSLLCLMKDHGFPP---FVDPFIKYVSKSGTSDDAIAFLKGM 608
+LL MK+ G P + IK ++ DDA+ K M
Sbjct: 451 VYALLKEMKEKGCPADGRTYNALIKLMTNRQMPDDAVRIYKKM 493
Score = 43.9 bits (102), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 68/341 (19%), Positives = 146/341 (42%), Gaps = 18/341 (5%)
Query: 121 LELSGVVFTHEMVLKVLKNLESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLV 180
L+ V +H +V+ VL+ + + A RFF W +K +S+TYN M+ ++G
Sbjct: 181 LDECNVDLSHALVVGVLERFKHARKPAFRFFCWAGQKAGFTHNSRTYNAMMSVLGRTRQF 240
Query: 181 QEFWGLVDVMKKKGYGVASHVRNKMTEKFEKEGLESDLEKLKGIFATG---SIDNSIEKV 237
+ G++ M +KG + + + +K G+F + D ++ +
Sbjct: 241 ESMMGMLGEMGEKGL----LTMETFSIAIKAFAAAKERKKAVGVFELMKRYNFDAGVDTI 296
Query: 238 ASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALI--FFRWAE--E 293
+ + R+ + G + + L F+ +L + V G K L+ W E +
Sbjct: 297 NCLLDNLGRAKL-GKEAQALFEKLEDRFTPNLRTYTVLLNGWCRIKNLVEAGRTWNEMID 355
Query: 294 SGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVK 353
GF K D +++ M L + K+ + M++KG + T ++ ++ ++
Sbjct: 356 KGF-KPDIIAHHTMLEGLLKCKKKSDAIKLFEVMKAKGPSPNVRTYTILIRDLCKQMKMQ 414
Query: 354 EAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNS 413
EAV+ ++ + +P T L+ K++D ++++ +++ +E G N+
Sbjct: 415 EAVEYFDEMVDSGCQPDAAVYTCLITGFGNQKKMD-KVYA-LLKEMKEKGCPADGRTYNA 472
Query: 414 VLKALISVGRMGECNKILKAMEEGGF---IASSNMKSKIAF 451
++K + + + +I K M + G + + NM K F
Sbjct: 473 LIKLMTNRQMPDDAVRIYKKMIQNGIQSTLHTYNMMMKSYF 513
>gi|115454009|ref|NP_001050605.1| Os03g0597200 [Oryza sativa Japonica Group]
gi|28875991|gb|AAO60000.1| putative pentatricopeptide repeat protein [Oryza sativa Japonica
Group]
gi|108709658|gb|ABF97453.1| DEAD/DEAH box helicase family protein, putative, expressed [Oryza
sativa Japonica Group]
gi|113549076|dbj|BAF12519.1| Os03g0597200 [Oryza sativa Japonica Group]
Length = 742
Score = 73.2 bits (178), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 80/360 (22%), Positives = 142/360 (39%), Gaps = 57/360 (15%)
Query: 300 DESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLY 359
D +YN + + L + ++ +L++M +G ++ T ++ N ++EA+DL
Sbjct: 320 DVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLA 379
Query: 360 EFAMACKNKPSVNCCTFLLRKI--VVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKA 417
P V L+ + V L +RLF ++ + +G + N+++
Sbjct: 380 RQVTVKGVSPDVYTFNILINALCKVGDPHLALRLFEEM----KNSGCTPDEVTYNTLIDN 435
Query: 418 LISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVG 477
L S+G++G+ +LK ME G S+ + I L + +EA E D M+ G
Sbjct: 436 LCSLGKLGKALDLLKDMESTGCPRSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRN 495
Query: 478 DKMWVSLIKG-----------------------------------HCVAGDLDKAADCFQ 502
+ +LI G +C GD+ KAAD +
Sbjct: 496 AITFNTLIDGLCKDKKIDDAFELINQMISEGLQPNNITYNSILTHYCKQGDIKKAADILE 555
Query: 503 KMVEKEGTSHAGYAIDL-----LVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELI 557
M + G+ +D+ L+N C R A K + +R ++P Y ++
Sbjct: 556 TM------TANGFEVDVVTYGTLINGLCKAGRTQVALKVLRG-MRIKGMRPTPKAYNPVL 608
Query: 558 KNLLVQRGFKDALSLLCLMKDHGFPP----FVDPFIKYVSKSGTSDDAIAFLKGMTSKRF 613
++L + +DALSL M + G PP + F G +A F+ M K F
Sbjct: 609 QSLFRRNNIRDALSLFREMAEVGEPPDALTYKIVFRGLCRGGGPIKEAFDFMLEMVDKGF 668
Score = 52.8 bits (125), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 110/529 (20%), Positives = 196/529 (37%), Gaps = 52/529 (9%)
Query: 130 HEMVLKVLKNLESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLVDV 189
E +L L+ + PD A R N L ++ + Y ++R +G G + LV
Sbjct: 41 QEQLLTALRE-QPDPDAALRMLNAALARDDFAPGPEVYEEIIRKLGAVGALDLMKVLVAE 99
Query: 190 MKKKGYGVASHVRNKMTEKFEKEGLESD--------LEKLKGIFATGSIDNSIEKVASRI 241
M+++G+ V V + + +E + L D L+ L GI A + N + V
Sbjct: 100 MRREGHQVKLGVVHSFLDSYEGQQLFDDAVDLILNQLQPLFGIQADTVVYNHLLNVLVEG 159
Query: 242 CKV-VRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHD 300
K+ + ++ + R ++ VTF N L+K + + + A++ G V D
Sbjct: 160 SKMKLLESVYSEMGARGIKPDVVTF-NTLMKALCR--AHQVRTAVLMLEEMSSRG-VAPD 215
Query: 301 ESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYE 360
E+++ + E I+ +V M G T ++ + + V++A+ +
Sbjct: 216 ETTFTTLMQGFVEEGSIEAALRVKARMLEMGCSATKVTVNVLINGYCKLGRVEDALGYIQ 275
Query: 361 FAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALIS 420
+A +P + + + + L KV+ V + G+ N V+ L
Sbjct: 276 QEIADGFEPDQITYNTFVNGLCQNDHVGHAL--KVMDVMVQEGHDPDVFTYNIVVNCLCK 333
Query: 421 VGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKM 480
G++ E IL M + G + + + L + + +EA + + G
Sbjct: 334 NGQLEEAKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLARQVTVKGVSPDVYT 393
Query: 481 WVSLIKGHCVAGDLDKAADCFQKMVEKEGT----------------SHAGYAIDLLVN-- 522
+ LI C GD A F++M T G A+DLL +
Sbjct: 394 FNILINALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKDME 453
Query: 523 -TYCSK-----NRAIDA-CKFV-----HNCVREYDLKPWH---TTYEELIKNLLVQRGFK 567
T C + N ID CK + + DL+ T+ LI L +
Sbjct: 454 STGCPRSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKKID 513
Query: 568 DALSLLCLMKDHGFPP---FVDPFIKYVSKSGTSDDAIAFLKGMTSKRF 613
DA L+ M G P + + + K G A L+ MT+ F
Sbjct: 514 DAFELINQMISEGLQPNNITYNSILTHYCKQGDIKKAADILETMTANGF 562
>gi|356560497|ref|XP_003548528.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04130,
mitochondrial-like [Glycine max]
Length = 490
Score = 73.2 bits (178), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 83/332 (25%), Positives = 139/332 (41%), Gaps = 39/332 (11%)
Query: 263 VTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWK 322
+ S DLV ++ + D+ K AL FRWA +H SY+ M +LGR +++
Sbjct: 71 IPLSRDLVHRLLWRYKDDWKSALGVFRWASSRPSFRHSSESYDMMVDILGRMKVMEKLRD 130
Query: 323 VLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMAC---KNKPSVNCCTFLLR 379
+L+EMR G + M T K + RF +AV +++ A KN S+N L
Sbjct: 131 LLEEMREGGL-VNMNTVAKAMRRFVGAGQWVDAVRIFDDLQALGLEKNTESMNLLLDTLC 189
Query: 380 K---IVVSKQLDMRL-----------------FSKVVRV---------FRENGNVLTDAM 410
K + ++++ + L + K+ RV + G
Sbjct: 190 KEKFVQQAREIFLELKQHIAPNAHTFNIFIHGWCKICRVDEAHWTIQEMKGYGFHPCVIS 249
Query: 411 LNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHME 470
+++++ G ++L M+ G A+ + I L A K +EA + + M
Sbjct: 250 YSTLIQCYCQEGNFSRVYELLDEMQAQGCSANVITYTSIMCALGKAKKFEEALKVPERMR 309
Query: 471 ASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYC---SK 527
+SG + SLI AG LD AAD F+ + K G S + +++ +C +
Sbjct: 310 SSGCRPDTLFFNSLIHTLGRAGRLDDAADVFKVEMPKAGVSPNTSTYNSMISMFCYHAQE 369
Query: 528 NRAIDACKFVHNCVREYDLKPWHTTYEELIKN 559
RA++ K + N KP TY LIK+
Sbjct: 370 KRALEILKEMEN---SGGCKPDAQTYHPLIKS 398
>gi|147771991|emb|CAN69054.1| hypothetical protein VITISV_022964 [Vitis vinifera]
Length = 586
Score = 73.2 bits (178), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 81/350 (23%), Positives = 144/350 (41%), Gaps = 22/350 (6%)
Query: 302 SSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEF 361
+++N + L E I + D+M +G++ + T ++ + A+ L
Sbjct: 139 ATFNTLIRGLCVEGKIGEVLHLFDKMIGEGFQPNVVTYGTLINGLCKVGSTSAAIRLLRS 198
Query: 362 AMACKNKPSVNCCTFLLRKIVVSKQLD--MRLFSKVVRVFRENGNVLTDAMLNSVLKALI 419
+P V T ++ + +Q+ LFS+++ G + NS++ AL
Sbjct: 199 MEQGNCQPDVVVYTSIIDSLCKDRQVTQAFNLFSEMIH----QGISPSIFTYNSLIHALC 254
Query: 420 SVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDK 479
++ +L M + + + S + L GK EA++ +D M G +
Sbjct: 255 NLCEWKHVTALLNEMVNSKIMPNVVIFSTVVDALCKEGKVMEAHDVVDMMIKRGVEPNVV 314
Query: 480 MWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDL-----LVNTYCSKNRAIDAC 534
+ +L+ GHC+ ++D+A F MV K G+A D+ L+N YC R A
Sbjct: 315 TYNALMDGHCLRSEMDEAVKVFDTMVCK------GFAPDVVSYSTLINGYCKIQRIEKAM 368
Query: 535 KFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHG-FPPFVD--PFIKY 591
R+ +L P TY L+ L +DA++L M G P FV + Y
Sbjct: 369 YLFEEMCRK-ELIPNTVTYSTLMHGLCHVGRLQDAIALFHEMVTRGQIPDFVSYCILLDY 427
Query: 592 VSKSGTSDDAIAFLKGMTSKRF-PSMSVVLCLFAAFFQARRHSEAQDLLS 640
+ K+ D+AIA LK + P + + + +A A+DL S
Sbjct: 428 LCKNRRLDEAIALLKAIEGSNMDPDIQIYTIVIDGMCRAGELEAARDLFS 477
Score = 48.9 bits (115), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 59/266 (22%), Positives = 109/266 (40%), Gaps = 16/266 (6%)
Query: 304 YNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAM 363
++ + L +E + V+D M +G E + T ++ R+ + EAV +++ M
Sbjct: 281 FSTVVDALCKEGKVMEAHDVVDMMIKRGVEPNVVTYNALMDGHCLRSEMDEAVKVFD-TM 339
Query: 364 ACKN-KPSVNCCTFLLRKIVVSKQLD--MRLFSKVVRVFRENGNVLTDAMLNSVLKALIS 420
CK P V + L+ ++++ M LF ++ R + ++++ L
Sbjct: 340 VCKGFAPDVVSYSTLINGYCKIQRIEKAMYLFEEMCR----KELIPNTVTYSTLMHGLCH 395
Query: 421 VGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKM 480
VGR+ + + M G I + L + DEA + +E S D ++
Sbjct: 396 VGRLQDAIALFHEMVTRGQIPDFVSYCILLDYLCKNRRLDEAIALLKAIEGSNMDPDIQI 455
Query: 481 WVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNC 540
+ +I G C AG+L+ A D F + K G + +++N C + +A K
Sbjct: 456 YTIVIDGMCRAGELEAARDLFSNLSSK-GLHPNVWTYTIMINGLCQQGLLAEASKLFGEM 514
Query: 541 VREYDLKPWHTTYEELIKNLLVQRGF 566
R+ P TY L+ RGF
Sbjct: 515 KRK-GYSPNGCTYN------LITRGF 533
>gi|125544747|gb|EAY90886.1| hypothetical protein OsI_12495 [Oryza sativa Indica Group]
Length = 742
Score = 73.2 bits (178), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 80/360 (22%), Positives = 142/360 (39%), Gaps = 57/360 (15%)
Query: 300 DESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLY 359
D +YN + + L + ++ +L++M +G ++ T ++ N ++EA+DL
Sbjct: 320 DVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLA 379
Query: 360 EFAMACKNKPSVNCCTFLLRKI--VVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKA 417
P V L+ + V L +RLF ++ + +G + N+++
Sbjct: 380 RQVTVKGVSPDVYTFNILINALCKVGDPHLALRLFEEM----KNSGCTPDEVTYNTLIDN 435
Query: 418 LISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVG 477
L S+G++G+ +LK ME G S+ + I L + +EA E D M+ G
Sbjct: 436 LCSLGKLGKALDLLKDMESTGCPRSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRN 495
Query: 478 DKMWVSLIKG-----------------------------------HCVAGDLDKAADCFQ 502
+ +LI G +C GD+ KAAD +
Sbjct: 496 AITFNTLIDGLCKDKKIDDAFELINQMISEGLQPNNITYNSILTHYCKQGDIKKAADILE 555
Query: 503 KMVEKEGTSHAGYAIDL-----LVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELI 557
M + G+ +D+ L+N C R A K + +R ++P Y ++
Sbjct: 556 TM------TANGFEVDVVTYGTLINGLCKAGRTQVALKVLRG-MRIKGMRPTPKAYNPVL 608
Query: 558 KNLLVQRGFKDALSLLCLMKDHGFPP----FVDPFIKYVSKSGTSDDAIAFLKGMTSKRF 613
++L + +DALSL M + G PP + F G +A F+ M K F
Sbjct: 609 QSLFRRNNIRDALSLFREMAEVGEPPDALTYKIVFRGLCRGGGPIKEAFDFMLEMVDKGF 668
Score = 53.9 bits (128), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 111/529 (20%), Positives = 196/529 (37%), Gaps = 52/529 (9%)
Query: 130 HEMVLKVLKNLESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLVDV 189
E +L L+ + PD A R N L ++ + Y ++R +G G + LV
Sbjct: 41 QEQLLTALRE-QPDPDAALRMLNAALARDDFAPGPEVYEEIIRKLGAVGALDLMKVLVAE 99
Query: 190 MKKKGYGVASHVRNKMTEKFEKEGLESD--------LEKLKGIFATGSIDNSIEKVASRI 241
M+++G+ V V + + +E + L D L+ L GI A + N + V
Sbjct: 100 MRREGHQVKLGVVHSFLDSYEGQQLFDDAVDLILNQLQPLFGIQADTVVYNHLLNVLVEG 159
Query: 242 CKV-VRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHD 300
K+ + ++ + R ++ VTF N L+K + + + A+I G V D
Sbjct: 160 SKMKLLESVYSEMGARGIKPDVVTF-NTLMKALCR--AHQVRTAVIMLEEMSSRG-VAPD 215
Query: 301 ESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYE 360
E+++ + E I+ +V M G T ++ + + V++A+ +
Sbjct: 216 ETTFTTLMQGFVEEGSIEAALRVKARMLEMGCSATKVTVNVLINGYCKLGRVEDALGYIQ 275
Query: 361 FAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALIS 420
+A +P + + + + L KV+ V + G+ N V+ L
Sbjct: 276 QEIADGFEPDQITYNTFVNGLCQNDHVGHAL--KVMDVMVQEGHDPDVFTYNIVVNCLCK 333
Query: 421 VGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKM 480
G++ E IL M + G + + + L + + +EA + + G
Sbjct: 334 NGQLEEAKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLARQVTVKGVSPDVYT 393
Query: 481 WVSLIKGHCVAGDLDKAADCFQKMVEKEGT----------------SHAGYAIDLLVN-- 522
+ LI C GD A F++M T G A+DLL +
Sbjct: 394 FNILINALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKDME 453
Query: 523 -TYCSK-----NRAIDA-CKFV-----HNCVREYDLKPWH---TTYEELIKNLLVQRGFK 567
T C + N ID CK + + DL+ T+ LI L +
Sbjct: 454 STGCPRSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKKID 513
Query: 568 DALSLLCLMKDHGFPP---FVDPFIKYVSKSGTSDDAIAFLKGMTSKRF 613
DA L+ M G P + + + K G A L+ MT+ F
Sbjct: 514 DAFELINQMISEGLQPNNITYNSILTHYCKQGDIKKAADILETMTANGF 562
>gi|356547408|ref|XP_003542104.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g16010-like [Glycine max]
Length = 631
Score = 73.2 bits (178), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 92/414 (22%), Positives = 167/414 (40%), Gaps = 26/414 (6%)
Query: 240 RICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKH 299
RI K+ + WG D E+ L L + LV+ ++ K+ E + FF+WA + +H
Sbjct: 61 RILKIFK---WGPDAEKALEVLKLKVDPRLVREIL-KIDVEVSVKIQFFKWAGKRRNFEH 116
Query: 300 DESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEM---EMETCVKVLGRFSERNMVKEAV 356
D ++Y A+ L WK + +M M E+ V++LG+ MV A+
Sbjct: 117 DSTTYMALIRCLDEHRMFGEVWKTIQDMVKGSCAMAPAELSEIVRILGK---AKMVNRAL 173
Query: 357 DLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRE---NGNVLTDAMLNS 413
++ K +P+ + ++ ++ + KV ++ E + D + S
Sbjct: 174 SVFYQVKGRKCRPTASTYNSIILMLMQEGHHE-----KVHELYNEMCSEVHCFPDTVTYS 228
Query: 414 VL-KALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEAS 472
L A + R ++ M+E G ++ + + + GK +EA + M A
Sbjct: 229 ALISAFAKLNRDDSAIRLFDEMKENGLQPTAKIYTTLMGIYFKVGKVEEALGLVKEMRAR 288
Query: 473 GSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAID 532
+ + LI+G +G ++ A ++ M+ K+G ++ L+N N D
Sbjct: 289 RCLLTVFTYTELIRGLGKSGRVEDAYMTYKNML-KDGCKPDVVLMNNLINILGRSNHLRD 347
Query: 533 ACKFVHNCVREYDLKPWHTTYEELIKNLLVQRG-FKDALSLLCLMKDHGFPP---FVDPF 588
A K ++ + P TY +IK+L + +A S MK G P
Sbjct: 348 AIKLFDE-MKLLNCAPNVVTYNTIIKSLFEAKAPLSEASSWFERMKKDGIVPSSFTYSIL 406
Query: 589 IKYVSKSGTSDDAIAFLKGMTSKRFPSMSVVLC-LFAAFFQARRHSEAQDLLSK 641
I K+ + A+ L+ M K FP C L A+R+ A +L +
Sbjct: 407 IDGYCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINTLGVAKRYDVANELFQE 460
Score = 50.1 bits (118), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 63/317 (19%), Positives = 133/317 (41%), Gaps = 12/317 (3%)
Query: 303 SYNAMASVLGREDCIDRFWKVLDEMRSKGYEME---METCVKVLGRFSERNMVKEAVDLY 359
+Y + LG+ ++ + M G + + M + +LGR N +++A+ L+
Sbjct: 296 TYTELIRGLGKSGRVEDAYMTYKNMLKDGCKPDVVLMNNLINILGR---SNHLRDAIKLF 352
Query: 360 EFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALI 419
+ P+V +++ + +K + S +++G V + + ++
Sbjct: 353 DEMKLLNCAPNVVTYNTIIKSLFEAKA-PLSEASSWFERMKKDGIVPSSFTYSILIDGYC 411
Query: 420 SVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDK 479
R+ + +L+ M+E GF + L A + D ANE ++ + +
Sbjct: 412 KTNRVEKALLLLEEMDEKGFPPCPAAYCSLINTLGVAKRYDVANELFQELKENCGCSSAR 471
Query: 480 MWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHN 539
++ +IK G L++A + F +M +K G + YA + L+ R +D +
Sbjct: 472 VYAVMIKHFGKCGRLNEAINLFNEM-KKLGCTPDVYAYNALMTGMVRAER-MDEAFSLFR 529
Query: 540 CVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPF---IKYVSKSG 596
+ E P ++ ++ L G K AL + MK+ P V F + +S++G
Sbjct: 530 TMEENGCTPDINSHNIILNGLARTGGPKGALEMFTKMKNSTIKPDVVSFNTILGCLSRAG 589
Query: 597 TSDDAIAFLKGMTSKRF 613
++A ++ M+SK F
Sbjct: 590 LFEEAAKLMQEMSSKGF 606
>gi|449455613|ref|XP_004145547.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g43820-like [Cucumis sativus]
Length = 572
Score = 73.2 bits (178), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 93/433 (21%), Positives = 166/433 (38%), Gaps = 64/433 (14%)
Query: 254 VERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGR 313
+E L + +V S D+V V++ + + FF WA + + D SSYN + LGR
Sbjct: 131 IEHALANTDVILSQDVVSKVLNTGSLGSEAMVTFFYWAIKQPSIPKDASSYNIILKALGR 190
Query: 314 EDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAV----DLYEFAMACKNKP 369
D VL M +G E +E V+ + + V +A+ +L E + C +
Sbjct: 191 RGFFDSMMDVLYNMTREGVEATLEMVSIVVDSLVKGHQVSKALQFFRNLKEIGLKCDTET 250
Query: 370 SVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAM-LNSVLKALISVGRMGECN 428
+ R+ V +K GN+ + M N V+ GR GE
Sbjct: 251 LNILLQCMCRRSHVGAANSFFNLTK--------GNIPFNVMTYNIVIGGWSRYGRHGEVE 302
Query: 429 KILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGH 488
++LKAME GF + + L A + D+A + D M+ +G + ++I
Sbjct: 303 QMLKAMELDGFSPDCLTHTYLIECLGRANQIDDAVKIFDKMDENGCTPDVDAYNAMISNF 362
Query: 489 CVAGDLDKAADCFQKMV----EKEGTSHAGY----------------------------- 515
GD D+ +++M+ E + +++
Sbjct: 363 ICIGDFDQCLTYYERMLSNRCEPDMNTYSNLITGFLKAKKVADALEMFDEMVARIIPTTG 422
Query: 516 AIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCL 575
AI + CS A ++ R+ + Y+ L+ L + F L++
Sbjct: 423 AITSFIQLSCSYGPP-HAAMLIYKKARKVGCRISKNAYKLLLMRLSLFGKFGMLLNIWNE 481
Query: 576 MKDHGFPPFVDPF---IKYVSKSGTSDDAIAFLKGMTSKRFPSMSVVLCLFAAFFQARR- 631
M++ G+ P V+ + I + K+G ++A+ ++ CL FF +RR
Sbjct: 482 MQESGYDPDVETYEHAIDCLCKTGQLENAVLVMEE-------------CLRQGFFPSRRT 528
Query: 632 HSEAQDLLSKCPR 644
S+ + L C R
Sbjct: 529 RSKLNNKLLACNR 541
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 82/408 (20%), Positives = 153/408 (37%), Gaps = 41/408 (10%)
Query: 110 KFSDVNDISKQLELSGVVFTHEMVLKVLKNLESSPDEARRFFNWVLEKESERLSSKTYNL 169
K + I L + V+ + ++V KVL + FF W +++ S + +YN+
Sbjct: 124 KLNGKTAIEHALANTDVILSQDVVSKVLNTGSLGSEAMVTFFYWAIKQPSIPKDASSYNI 183
Query: 170 MLRIVGVHGLVQEFWGLVDVMKKKGYG-------------VASHVRNKMTEKFE--KE-G 213
+L+ +G G ++ M ++G V H +K + F KE G
Sbjct: 184 ILKALGRRGFFDSMMDVLYNMTREGVEATLEMVSIVVDSLVKGHQVSKALQFFRNLKEIG 243
Query: 214 LESDLEKLKGIFATGSIDNSIEKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFV 273
L+ D E L + C RS + + L N+ F+ V
Sbjct: 244 LKCDTETLNILLQ---------------CMCRRSHVGAANSFFNLTKGNIPFNVMTYNIV 288
Query: 274 VDKLGDEPKKALI--FFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKG 331
+ + + + E GF D ++ + LGR + ID K+ D+M G
Sbjct: 289 IGGWSRYGRHGEVEQMLKAMELDGF-SPDCLTHTYLIECLGRANQIDDAVKIFDKMDENG 347
Query: 332 YEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQL--DM 389
+++ ++ F + + YE ++ + +P +N + L+ + +K++ +
Sbjct: 348 CTPDVDAYNAMISNFICIGDFDQCLTYYERMLSNRCEPDMNTYSNLITGFLKAKKVADAL 407
Query: 390 RLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKI 449
+F ++V + T + S ++ S G I K + G S N +
Sbjct: 408 EMFDEMVARI-----IPTTGAITSFIQLSCSYGPPHAAMLIYKKARKVGCRISKNAYKLL 462
Query: 450 AFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKA 497
RLS GK + M+ SG D + + I C G L+ A
Sbjct: 463 LMRLSLFGKFGMLLNIWNEMQESGYDPDVETYEHAIDCLCKTGQLENA 510
>gi|218196531|gb|EEC78958.1| hypothetical protein OsI_19424 [Oryza sativa Indica Group]
Length = 975
Score = 73.2 bits (178), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 73/263 (27%), Positives = 108/263 (41%), Gaps = 18/263 (6%)
Query: 282 KKALIFFRWAEESGFVKHDESSYNAMASVLGRED--CIDRFWKVLDEMRSKGYEMEMETC 339
+ AL FFRWA + +H S NAMAS+L R +DR R +
Sbjct: 85 RHALDFFRWAADQPGFRHSCYSLNAMASLLPRHQRAHLDRLAADAISARCLMTPGALGFL 144
Query: 340 VKVLGRFSERNMVKEAVDLYEFAMACK-NKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRV 398
++ LG + A D + C N + NC L K + RL V R
Sbjct: 145 LRCLGAAGLPDTAVRAFDAARASFGCTPNSYTYNCLLDALAKAGRADDAQARLREMVARC 204
Query: 399 FRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGK 458
+G+V L S+L+ + GR + N + + M E G++ ++ + + S GK
Sbjct: 205 --GDGSV-DKYTLTSLLRCYCNAGRPDDANDVFQRMSELGWV-DEHVLTTLMVAFSKWGK 260
Query: 459 KDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAID 518
D A E + MEA G + +K L+ G G +DKA D F KMV G+ +D
Sbjct: 261 VDGAVELLGSMEALGMRLSEKTLSVLVHGFTKQGRVDKAMDMFAKMVSY------GFVVD 314
Query: 519 L-----LVNTYCSKNRAIDACKF 536
L L+ C + A K
Sbjct: 315 LAMYSVLIEGLCQQKDIARAVKL 337
Score = 52.4 bits (124), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 93/478 (19%), Positives = 188/478 (39%), Gaps = 63/478 (13%)
Query: 162 LSSKTYNLMLRIVGVHGLVQEFWGLVDVMKKK-GYGVASHVRNKMTEKFEKEGLESDLE- 219
++ +LR +G GL D + G S+ N + + K G D +
Sbjct: 136 MTPGALGFLLRCLGAAGLPDTAVRAFDAARASFGCTPNSYTYNCLLDALAKAGRADDAQA 195
Query: 220 KLKGIFA---TGSIDN-SIEKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVD 275
+L+ + A GS+D ++ + C R D +DV +++ +L + L +V
Sbjct: 196 RLREMVARCGDGSVDKYTLTSLLRCYCNAGRPDD-ANDVFQRMSELGWVDEHVLTTLMV- 253
Query: 276 KLGDEPKKALIFFRWAEESGFV-----------KHDESSYNAMASVLGREDCIDRFWKVL 324
F +W + G V + E + + + ++ +D+ +
Sbjct: 254 ----------AFSKWGKVDGAVELLGSMEALGMRLSEKTLSVLVHGFTKQGRVDKAMDMF 303
Query: 325 DEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVS 384
+M S G+ +++ ++ ++ + AV L++ + P V LL+K++ +
Sbjct: 304 AKMVSYGFVVDLAMYSVLIEGLCQQKDIARAVKLFKEMKSSGVAPDVR----LLKKVIEA 359
Query: 385 --KQLDMRLFSKVVRVFRENGNVLTDA----MLNSVLKALISVGRMGECNKILKAMEEGG 438
++ D F+ + EN L + N VL+ L+ G + ++L++M GG
Sbjct: 360 FCREGD---FAVIGPFINENAEYLKSGSVVPLYNVVLEELVHCGEVEAAYQLLRSMVCGG 416
Query: 439 FIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAA 498
++++ M H+ D + ++ G C LD A
Sbjct: 417 QAVNNDVA---------------GGAHMLHIREDAKPNSDSFNI-VVCGLCKVKKLDMAL 460
Query: 499 DCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIK 558
+ M+ G + L++ C+ +R ++ + N +++ L P TY L
Sbjct: 461 ALTKDMISL-GCKGKILMFNDLIHELCNMDR-LEEGYGIFNQMKDLGLTPSEFTYNSLFY 518
Query: 559 NLLVQRGFKDALSLLCLMKDHGFPPFVDPFIKYVSK---SGTSDDAIAFLKGMTSKRF 613
+ ++ K AL LL M+ +G PP++ + V + SG +A+ FL GM F
Sbjct: 519 GICRRKYPKAALDLLREMQTNGHPPWIKNCTEMVQQLCFSGRVTEAVQFLDGMLQIGF 576
Score = 49.7 bits (117), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 56/248 (22%), Positives = 100/248 (40%), Gaps = 19/248 (7%)
Query: 395 VVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLS 454
++R + NG+ +++ L GR+ E + L M + GF+ S +
Sbjct: 532 LLREMQTNGHPPWIKNCTEMVQQLCFSGRVTEAVQFLDGMLQIGFLPDIVTYSAAMNGMC 591
Query: 455 SAGKKDEANEFMDHMEASGSDVGDKMWVS-------LIKGHCVAGDLDKAADCFQKMVEK 507
+ G+ D+A D+ K ++ LI G + LD+A ++M+EK
Sbjct: 592 NTGEVDDALHLF-------RDISCKYYLPDVVAHNILINGFRKSSKLDEAQKIMEEMLEK 644
Query: 508 EGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFK 567
G + +L+++ C R A ++ V E + +P TY LI
Sbjct: 645 -GLFPSVVTYNLMIDVCCKTGRIEKAISYLDKMVYE-EKQPTVITYTSLIDGFCSAGRPD 702
Query: 568 DALSLLCLMKDHGFPP---FVDPFIKYVSKSGTSDDAIAFLKGMTSKRFPSMSVVLCLFA 624
+A+ L C M++ G P FI + K G + A+ + + M +K F + L F
Sbjct: 703 EAIKLWCEMREKGCAPNNIAYTAFINGLRKCGRIETALTYFEEMVTKGFELDTFSLLYFI 762
Query: 625 AFFQARRH 632
F + H
Sbjct: 763 NFLISNGH 770
Score = 41.2 bits (95), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 43/209 (20%), Positives = 88/209 (42%), Gaps = 6/209 (2%)
Query: 301 ESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYE 360
E +YN++ + R +L EM++ G+ ++ C +++ + V EAV +
Sbjct: 510 EFTYNSLFYGICRRKYPKAALDLLREMQTNGHPPWIKNCTEMVQQLCFSGRVTEAVQFLD 569
Query: 361 FAMACKNKPSVNCCTFLLRKIVVSKQLD--MRLFSKVVRVFRENGNVLTDAMLNSVLKAL 418
+ P + + + + + ++D + LF + + V + ++N K+
Sbjct: 570 GMLQIGFLPDIVTYSAAMNGMCNTGEVDDALHLFRDISCKYYLPDVVAHNILINGFRKS- 628
Query: 419 ISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGD 478
++ E KI++ M E G S + + G+ ++A ++D M
Sbjct: 629 ---SKLDEAQKIMEEMLEKGLFPSVVTYNLMIDVCCKTGRIEKAISYLDKMVYEEKQPTV 685
Query: 479 KMWVSLIKGHCVAGDLDKAADCFQKMVEK 507
+ SLI G C AG D+A + +M EK
Sbjct: 686 ITYTSLIDGFCSAGRPDEAIKLWCEMREK 714
>gi|356554658|ref|XP_003545661.1| PREDICTED: pentatricopeptide repeat-containing protein At1g22960,
mitochondrial-like [Glycine max]
Length = 675
Score = 73.2 bits (178), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 75/337 (22%), Positives = 152/337 (45%), Gaps = 11/337 (3%)
Query: 273 VVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGY 332
V++ + P AL FFRWAE K E +Y + +L R + + V++++ S
Sbjct: 53 VLNTVRHRPAVALRFFRWAERQTGFKRSELTYAVILDILARNGLMRSAYCVMEKVVSVKM 112
Query: 333 EMEMETCVKVLGR---FSERNMVKEAVDLYEFAMACKNK-PSVNCCTFLLRKIVVSKQLD 388
E + + + +++++M+++ + ++ + M K P + C +LR ++ +
Sbjct: 113 ENGVVDVLILDLLLWIYAKKSMLEKCLLVF-YKMVSKGMLPDLKNCNRVLR-LLRDRDSS 170
Query: 389 MRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSK 448
+ + +V V E G T N++L + G++ E ++L M++ G + + +
Sbjct: 171 IDVAREVYNVMVECGIRPTVVTYNTMLDSFCKQGKVQEALQLLLQMQKMGCLPNDVTYNV 230
Query: 449 IAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKE 508
+ LS +G+ ++A E + M G +V + LI+G+C G LD+A+ ++M+ +
Sbjct: 231 LVNGLSHSGELEQAKELIQEMLRLGLEVSAYTYDPLIRGYCEKGQLDEASRLGEEMLSR- 289
Query: 509 GTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKD 568
G + ++ C R DA K + V + +L P +Y LI +
Sbjct: 290 GAVPTLVTYNTIMYGLCKWGRVSDARKLLDVMVNK-NLMPDLVSYNTLIYGYTRLGNIGE 348
Query: 569 ALSLLCLMKDHGFPPFV---DPFIKYVSKSGTSDDAI 602
A L ++ G P V + I + + G D A+
Sbjct: 349 AFLLFAELRFRGLVPSVVTYNTLIDGLCRMGDLDVAM 385
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 84/392 (21%), Positives = 166/392 (42%), Gaps = 25/392 (6%)
Query: 131 EMVLKVLKNLESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFW----GL 186
+++++VL + P A RFF W + + S TY ++L I+ +GL++ + +
Sbjct: 48 QLLVRVLNTVRHRPAVALRFFRWAERQTGFKRSELTYAVILDILARNGLMRSAYCVMEKV 107
Query: 187 VDVMKKKGYGVASHVRNKMTEKFEKEGLESDLEKLKGIFATGSIDNSIEKVASRICKVVR 246
V V + G + + +K LE L + + G + + K +R+ +++R
Sbjct: 108 VSVKMENGVVDVLILDLLLWIYAKKSMLEKCLLVFYKMVSKGMLPDL--KNCNRVLRLLR 165
Query: 247 SDIWGDDVERQ---------LRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFV 297
DV R+ +R VT++ L F K G + ++AL ++ G +
Sbjct: 166 DRDSSIDVAREVYNVMVECGIRPTVVTYNTMLDSFC--KQG-KVQEALQLLLQMQKMGCL 222
Query: 298 KHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVD 357
+D +YN + + L +++ +++ EM G E+ T ++ + E+ + EA
Sbjct: 223 PND-VTYNVLVNGLSHSGELEQAKELIQEMLRLGLEVSAYTYDPLIRGYCEKGQLDEASR 281
Query: 358 LYEFAMACKNKPS-VNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAM-LNSVL 415
L E ++ P+ V T + + D R V+ N N++ D + N+++
Sbjct: 282 LGEEMLSRGAVPTLVTYNTIMYGLCKWGRVSDARKLLDVM----VNKNLMPDLVSYNTLI 337
Query: 416 KALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSD 475
+G +GE + + G + S + + L G D A D M G D
Sbjct: 338 YGYTRLGNIGEAFLLFAELRFRGLVPSVVTYNTLIDGLCRMGDLDVAMRLKDEMIKHGPD 397
Query: 476 VGDKMWVSLIKGHCVAGDLDKAADCFQKMVEK 507
+ L++G C G+L A + F +M+ +
Sbjct: 398 PDVFTFTILVRGFCKLGNLPMAKELFDEMLNR 429
>gi|380875521|gb|AFF27500.1| PPR domain-containing protein [Oryza sativa Indica Group]
Length = 742
Score = 73.2 bits (178), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 80/360 (22%), Positives = 142/360 (39%), Gaps = 57/360 (15%)
Query: 300 DESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLY 359
D +YN + + L + ++ +L++M +G ++ T ++ N ++EA+DL
Sbjct: 320 DVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLA 379
Query: 360 EFAMACKNKPSVNCCTFLLRKI--VVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKA 417
P V L+ + V L +RLF ++ + +G + N+++
Sbjct: 380 RQVTVKGVSPDVYTFNILINALCKVGDPHLALRLFEEM----KNSGCTPDEVTYNTLIDN 435
Query: 418 LISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVG 477
L S+G++G+ +LK ME G S+ + I L + +EA E D M+ G
Sbjct: 436 LCSLGKLGKALDLLKDMESTGCPRSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRN 495
Query: 478 DKMWVSLIKG-----------------------------------HCVAGDLDKAADCFQ 502
+ +LI G +C GD+ KAAD +
Sbjct: 496 AITFNTLIDGLCKDKKIDDAFGLINQMISEGLQPNNITYNSILTHYCKQGDIKKAADILE 555
Query: 503 KMVEKEGTSHAGYAIDL-----LVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELI 557
M + G+ +D+ L+N C R A K + +R ++P Y ++
Sbjct: 556 TM------TANGFEVDVVTYGTLINGLCKAGRTQVALKVLRG-MRIKGMRPTPKAYNPVL 608
Query: 558 KNLLVQRGFKDALSLLCLMKDHGFPP----FVDPFIKYVSKSGTSDDAIAFLKGMTSKRF 613
++L + +DALSL M + G PP + F G +A F+ M K F
Sbjct: 609 QSLFRRNNIRDALSLFREMAEVGEPPDALTYKIVFRGLCRGGGPIKEAFDFMLEMVDKGF 668
Score = 52.8 bits (125), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 110/529 (20%), Positives = 196/529 (37%), Gaps = 52/529 (9%)
Query: 130 HEMVLKVLKNLESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLVDV 189
E +L L+ + PD A R N L ++ + Y ++R +G G + LV
Sbjct: 41 QEQLLTALRE-QPDPDAALRMLNAALARDDFAPGPEVYEEIIRKLGAVGALDLMKVLVAE 99
Query: 190 MKKKGYGVASHVRNKMTEKFEKEGLESD--------LEKLKGIFATGSIDNSIEKVASRI 241
M+++G+ V V + + +E + L D L+ L GI A + N + V
Sbjct: 100 MRREGHQVKLGVVHSFLDSYEGQQLFDDAVDLILNQLQPLFGIQADTVVYNHLLNVLVEG 159
Query: 242 CKV-VRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHD 300
K+ + ++ + R ++ VTF N L+K + + + A++ G V D
Sbjct: 160 SKMKLLESVYSEMGARGIKPDVVTF-NTLMKALCR--AHQVRTAVLMLEEMSSRG-VAPD 215
Query: 301 ESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYE 360
E+++ + E I+ +V M G T ++ + + V++A+ +
Sbjct: 216 ETTFTTLMQGFVEEGSIEAALRVKARMLEMGCSATKVTVNVLINGYCKLGRVEDALGYIQ 275
Query: 361 FAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALIS 420
+A +P + + + + L KV+ V + G+ N V+ L
Sbjct: 276 QEIADGFEPDQITYNTFVNGLCQNDHVGHAL--KVMDVMVQEGHDPDVFTYNIVVNCLCK 333
Query: 421 VGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKM 480
G++ E IL M + G + + + L + + +EA + + G
Sbjct: 334 NGQLEEAKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLARQVTVKGVSPDVYT 393
Query: 481 WVSLIKGHCVAGDLDKAADCFQKMVEKEGT----------------SHAGYAIDLLVN-- 522
+ LI C GD A F++M T G A+DLL +
Sbjct: 394 FNILINALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKDME 453
Query: 523 -TYCSK-----NRAIDA-CKFV-----HNCVREYDLKPWH---TTYEELIKNLLVQRGFK 567
T C + N ID CK + + DL+ T+ LI L +
Sbjct: 454 STGCPRSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKKID 513
Query: 568 DALSLLCLMKDHGFPP---FVDPFIKYVSKSGTSDDAIAFLKGMTSKRF 613
DA L+ M G P + + + K G A L+ MT+ F
Sbjct: 514 DAFGLINQMISEGLQPNNITYNSILTHYCKQGDIKKAADILETMTANGF 562
>gi|222631078|gb|EEE63210.1| hypothetical protein OsJ_18020 [Oryza sativa Japonica Group]
Length = 975
Score = 73.2 bits (178), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 73/263 (27%), Positives = 108/263 (41%), Gaps = 18/263 (6%)
Query: 282 KKALIFFRWAEESGFVKHDESSYNAMASVLGRED--CIDRFWKVLDEMRSKGYEMEMETC 339
+ AL FFRWA + +H S NAMAS+L R +DR R +
Sbjct: 85 RHALDFFRWAADQPGFRHSCYSLNAMASLLPRHQRAHLDRLAADAISARCLMTPGALGFL 144
Query: 340 VKVLGRFSERNMVKEAVDLYEFAMACK-NKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRV 398
++ LG + A D + C N + NC L K + RL V R
Sbjct: 145 LRCLGAAGLPDTAVRAFDAARASFGCTPNSYTYNCLLDALAKAGRADDAQARLREMVARC 204
Query: 399 FRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGK 458
+G+V L S+L+ + GR + N + + M E G++ ++ + + S GK
Sbjct: 205 --GDGSV-DKYTLTSLLRCYCNAGRPDDANDVFQRMSELGWV-DEHVLTTLMVAFSKWGK 260
Query: 459 KDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAID 518
D A E + MEA G + +K L+ G G +DKA D F KMV G+ +D
Sbjct: 261 VDGAVELLGSMEALGMRLSEKTLSVLVHGFTKQGRVDKAMDMFAKMVSY------GFVVD 314
Query: 519 L-----LVNTYCSKNRAIDACKF 536
L L+ C + A K
Sbjct: 315 LAMYSVLIEGLCQQKDIARAVKL 337
Score = 53.1 bits (126), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 93/478 (19%), Positives = 188/478 (39%), Gaps = 63/478 (13%)
Query: 162 LSSKTYNLMLRIVGVHGLVQEFWGLVDVMKKK-GYGVASHVRNKMTEKFEKEGLESDLE- 219
++ +LR +G GL D + G S+ N + + K G D +
Sbjct: 136 MTPGALGFLLRCLGAAGLPDTAVRAFDAARASFGCTPNSYTYNCLLDALAKAGRADDAQA 195
Query: 220 KLKGIFA---TGSIDN-SIEKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVD 275
+L+ + A GS+D ++ + C R D +DV +++ +L + L +V
Sbjct: 196 RLREMVARCGDGSVDKYTLTSLLRCYCNAGRPDD-ANDVFQRMSELGWVDEHVLTTLMV- 253
Query: 276 KLGDEPKKALIFFRWAEESGFV-----------KHDESSYNAMASVLGREDCIDRFWKVL 324
F +W + G V + E + + + ++ +D+ +
Sbjct: 254 ----------AFSKWGKVDGAVELLGSMEALGMRLSEKTLSVLVHGFTKQGRVDKAMDMF 303
Query: 325 DEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVS 384
+M S G+ +++ ++ ++ + AV L++ + P V LL+K++ +
Sbjct: 304 AKMVSYGFVVDLAMYSVLIEGLCQQKDIARAVKLFKEMKSSGVAPDVR----LLKKVIEA 359
Query: 385 --KQLDMRLFSKVVRVFRENGNVLTDA----MLNSVLKALISVGRMGECNKILKAMEEGG 438
++ D F+ + EN L + N VL+ L+ G + ++L++M GG
Sbjct: 360 FCREGD---FAVIGPFINENAEYLKSGSVVPLYNVVLEELVHCGEVEAAYQLLRSMVCGG 416
Query: 439 FIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAA 498
++++ M H+ D + ++ G C LD A
Sbjct: 417 QAVNNDVA---------------GGAHMLHIREDAKPNSDSFNI-VVCGLCKVKKLDMAL 460
Query: 499 DCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIK 558
+ M+ G + L++ C+ +R ++ + N +++ L P TY L
Sbjct: 461 ALTKDMISL-GCKGKILMFNDLIHELCNMDR-LEEGYGIFNQMKDLGLTPSEFTYNSLFY 518
Query: 559 NLLVQRGFKDALSLLCLMKDHGFPPFVDPFIKYVSK---SGTSDDAIAFLKGMTSKRF 613
+ ++ K AL LL M+ +G PP++ + V + SG +A+ FL GM F
Sbjct: 519 GICRRKDPKAALDLLREMQTNGHPPWIKNCTEMVQQLCFSGRVTEAVQFLDGMLQIGF 576
Score = 48.5 bits (114), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 56/255 (21%), Positives = 103/255 (40%), Gaps = 19/255 (7%)
Query: 383 VSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIAS 442
+ ++ D + ++R + NG+ +++ L GR+ E + L M + GF+
Sbjct: 520 ICRRKDPKAALDLLREMQTNGHPPWIKNCTEMVQQLCFSGRVTEAVQFLDGMLQIGFLPD 579
Query: 443 SNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVS-------LIKGHCVAGDLD 495
S + + G+ D+A D+ K ++ LI G + LD
Sbjct: 580 IVTYSAAMNGMCNTGEVDDALHLF-------RDISCKYYLPDVVAHNILINGFRKSSKLD 632
Query: 496 KAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEE 555
+A ++M+EK G + +L+++ C R A ++ V E + +P TY
Sbjct: 633 EAQKIMEEMLEK-GLFPSVVTYNLMIDVCCKTGRIEKAISYLDKMVYE-EKQPTVITYTS 690
Query: 556 LIKNLLVQRGFKDALSLLCLMKDHGFPP---FVDPFIKYVSKSGTSDDAIAFLKGMTSKR 612
LI +A+ L C M++ G P FI + K G + A+ + + M +K
Sbjct: 691 LIDGFCSAGRPDEAIKLWCEMREKGCAPNNIAYTAFINGLRKCGRIETALTYFEEMVTKG 750
Query: 613 FPSMSVVLCLFAAFF 627
F + L F F
Sbjct: 751 FELDTFSLLYFINFL 765
Score = 40.8 bits (94), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 54/269 (20%), Positives = 108/269 (40%), Gaps = 11/269 (4%)
Query: 301 ESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYE 360
E +YN++ + R +L EM++ G+ ++ C +++ + V EAV +
Sbjct: 510 EFTYNSLFYGICRRKDPKAALDLLREMQTNGHPPWIKNCTEMVQQLCFSGRVTEAVQFLD 569
Query: 361 FAMACKNKPSVNCCTFLLRKIVVSKQLD--MRLFSKVVRVFRENGNVLTDAMLNSVLKAL 418
+ P + + + + + ++D + LF + + V + ++N K+
Sbjct: 570 GMLQIGFLPDIVTYSAAMNGMCNTGEVDDALHLFRDISCKYYLPDVVAHNILINGFRKS- 628
Query: 419 ISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGD 478
++ E KI++ M E G S + + G+ ++A ++D M
Sbjct: 629 ---SKLDEAQKIMEEMLEKGLFPSVVTYNLMIDVCCKTGRIEKAISYLDKMVYEEKQPTV 685
Query: 479 KMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVH 538
+ SLI G C AG D+A + +M EK G + A +N R A +
Sbjct: 686 ITYTSLIDGFCSAGRPDEAIKLWCEMREK-GCAPNNIAYTAFINGLRKCGRIETALTYFE 744
Query: 539 NCV-REYDLKPWHTTYEELIKNLLVQRGF 566
V + ++L + Y N L+ G+
Sbjct: 745 EMVTKGFELDTFSLLY---FINFLISNGY 770
>gi|255660926|gb|ACU25632.1| pentatricopeptide repeat-containing protein [Neosparton
ephedroides]
Length = 484
Score = 72.8 bits (177), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 86/389 (22%), Positives = 159/389 (40%), Gaps = 45/389 (11%)
Query: 258 LRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCI 317
+R+L +F ++LV V+ + AL FFRW E S +H+ ++ + +LGR +
Sbjct: 3 IRNLVPSFDHELVYNVLHG-AKNSEHALQFFRWVERSNLFEHNRETHLKIIEILGRASKL 61
Query: 318 DRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFL 377
+ +L +M KG E + + V ++ + + +V+E+V
Sbjct: 62 NHARCILLDMPKKGLEWDEDMWVLMIDSYGKEGIVQESV--------------------- 100
Query: 378 LRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEG 437
+LF K+ E G T +++ K ++ GR + M
Sbjct: 101 ------------KLFQKM----EELGVERTIKSYDALFKVIMRRGRFMMAKRYFNKMLSE 144
Query: 438 GFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKA 497
G + + + + + +GK + AN F + M++ + ++I G+C +++A
Sbjct: 145 GIEPTRHTFNVMIWGFFLSGKVETANRFFEDMKSREISPDVITYNTMINGYCRVKKMEEA 204
Query: 498 ADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELI 557
F +M K L+ Y S ++ DA + V ++ Y +KP TY L+
Sbjct: 205 EKYFVEMKGK-NIEPTVVTYTTLIKGYVSVDQVDDALRLVEE-MKGYGIKPNAITYSTLL 262
Query: 558 KNLLVQRGFKDALSLLCLMKDHGFPPFVDP-FIKYVS---KSGTSDDAIAFLKGMTSKRF 613
L +A S+L M D P + F++ +S K G D A LK M
Sbjct: 263 PGLCNAEKMSEARSILKEMVDKYIAPTDNSIFMRLISSHCKVGNLDAAADVLKAMIRLSV 322
Query: 614 PSMSVVL-CLFAAFFQARRHSEAQDLLSK 641
P+ + L + +A ++ +A LL K
Sbjct: 323 PTEAGHYGVLIENYCKAGQYDQAVKLLDK 351
Score = 55.5 bits (132), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 108/496 (21%), Positives = 202/496 (40%), Gaps = 77/496 (15%)
Query: 128 FTHEMVLKVLKNLESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLV 187
F HE+V VL ++S + A +FF WV + +T+ ++ I+G + ++
Sbjct: 10 FDHELVYNVLHGAKNS-EHALQFFRWVERSNLFEHNRETHLKIIEILGRASKLNHARCIL 68
Query: 188 DVMKKKGYGVASHVRNKMTEKFEKEGLESDLEKLKGIFATGSIDNSIEKVASRICKVVRS 247
M KKG + M + + KEG+ + KL +E++
Sbjct: 69 LDMPKKGLEWDEDMWVLMIDSYGKEGIVQESVKLF---------QKMEELG--------- 110
Query: 248 DIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAM 307
VER ++ + F V+ + G F + E ++ ++N M
Sbjct: 111 ------VERTIKSYDALFK------VIMRRGRFMMAKRYFNKMLSEG--IEPTRHTFNVM 156
Query: 308 A---SVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMA 364
+ G+ + +RF+ ++M+S+ ++ T ++ + ++EA + Y M
Sbjct: 157 IWGFFLSGKVETANRFF---EDMKSREISPDVITYNTMINGYCRVKKMEEA-EKYFVEMK 212
Query: 365 CKN-KPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGR 423
KN +P+V T L++ V Q+D L ++V + G +++L L + +
Sbjct: 213 GKNIEPTVVTYTTLIKGYVSVDQVDDAL--RLVEEMKGYGIKPNAITYSTLLPGLCNAEK 270
Query: 424 MGECNKILKAMEEGGFIASSNMKSKIAFRLSSA----GKKDEANEFMDHMEASGSDVGDK 479
M E ILK M + +IA ++ + I RL S+ G D A + + M
Sbjct: 271 MSEARSILKEMVDK-YIAPTD--NSIFMRLISSHCKVGNLDAAADVLKAMIRLSVPTEAG 327
Query: 480 MWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHN 539
+ LI+ +C AG D+A K++EK D++V + + A +N
Sbjct: 328 HYGVLIENYCKAGQYDQAVKLLDKLIEK----------DIIVRPQSTLHMEPSA----YN 373
Query: 540 CVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPFIKYVSKSGTSD 599
+ EY T+ E + L++ G +D +L L++ H S+ G+ D
Sbjct: 374 PIVEYLCNNGQTSKAEALVRQLMKLGVQDPTALNTLIRGH-------------SQEGSPD 420
Query: 600 DAIAFLKGMTSKRFPS 615
A LK M ++ S
Sbjct: 421 SAFELLKIMLRRKVDS 436
>gi|449455685|ref|XP_004145582.1| PREDICTED: pentatricopeptide repeat-containing protein At4g31850,
chloroplastic-like [Cucumis sativus]
Length = 1113
Score = 72.8 bits (177), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 74/322 (22%), Positives = 141/322 (43%), Gaps = 13/322 (4%)
Query: 296 FVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEA 355
++ D +Y + L + + VL++MR G+ + + ++ + EA
Sbjct: 152 IIRRDLDTYLTIFKALSIRGGLRQMTTVLNKMRKAGFVLNAYSYNGLIHLLIQSGFCGEA 211
Query: 356 VDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENG---NVLTDAMLN 412
+++Y ++ KPS+ + L+ + + K+ D + +++ + G NV T
Sbjct: 212 LEVYRRMVSEGLKPSLKTYSALM--VALGKKRDSEMVMVLLKEMEDLGLRPNVYT---FT 266
Query: 413 SVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEAS 472
++ L G++ E +I + M++ G + + L +AG+ + A E M+A+
Sbjct: 267 ICIRVLGRAGKIDEAYEIFRRMDDEGCGPDLVTYTVLIDALCNAGQLENAKELFVKMKAN 326
Query: 473 GSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAID 532
G ++++L+ GDLD + + +M E +G +LV+ C K R D
Sbjct: 327 GHKPDQVIYITLLDKFNDFGDLDTFKEFWSQM-EADGYMPDVVTFTILVDVLC-KARDFD 384
Query: 533 ACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFV---DPFI 589
+ +R+ + P TY LI LL +DAL LL M+ G P + FI
Sbjct: 385 EAFATFDVMRKQGILPNLHTYNTLICGLLRAGRIEDALKLLGTMESVGVQPTAYTYNIFI 444
Query: 590 KYVSKSGTSDDAIAFLKGMTSK 611
Y KSG + A+ + M +K
Sbjct: 445 DYFGKSGETGKAVETFEKMKAK 466
Score = 58.2 bits (139), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 70/306 (22%), Positives = 124/306 (40%), Gaps = 6/306 (1%)
Query: 303 SYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFA 362
+YN + L R I+ K+L M S G + T + F + +AV+ +E
Sbjct: 404 TYNTLICGLLRAGRIEDALKLLGTMESVGVQPTAYTYNIFIDYFGKSGETGKAVETFEKM 463
Query: 363 MACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVG 422
A P++ C L + +L R + RENG N ++K VG
Sbjct: 464 KAKGIVPNIVACNASLYSLAEMGRL--REAKTMFNGLRENGLAPDSVTYNMMMKCYSKVG 521
Query: 423 RMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWV 482
++ E +L M G + + + L AG+ DEA + D M+ +
Sbjct: 522 QVDEAVNLLSEMIRNGCEPDVIVVNSLIDSLYKAGRVDEAWQMFDRMKDMKLSPTVVTYN 581
Query: 483 SLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVR 542
+L+ G G + KA + F+ M+EK+ + + + + L++ +C KN ++ + + +
Sbjct: 582 TLLSGLGKEGRVQKAIELFESMIEKKCSPNT-ISFNTLLDCFC-KNDEVELALKMFSKMT 639
Query: 543 EYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVD--PFIKYVSKSGTSDD 600
D KP TY +I L+ + A +K P V + + K G D
Sbjct: 640 VMDCKPDVLTYNTVIYGLIKENKVNHAFWFFHQLKKSMHPDHVTICTLLPGLVKCGQIGD 699
Query: 601 AIAFLK 606
AI+ +
Sbjct: 700 AISIAR 705
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 106/522 (20%), Positives = 204/522 (39%), Gaps = 51/522 (9%)
Query: 129 THEMVLKVLKNLESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLVD 188
+ + VL VLK++ + P A +F + E + +++T N ML + VH V++ + +
Sbjct: 88 SEDEVLGVLKSM-TDPIRALSYFYSISEFPTVLHTTETCNFMLEFLRVHDKVEDMAAVFE 146
Query: 189 VMKKKGYGVASHVRNKMTEKFEKEGLESDLEKLKGIFATGSIDNSIEKVASRICKVVRSD 248
M+KK + DL+ IF SI + ++ + + K+ ++
Sbjct: 147 FMQKK-------------------IIRRDLDTYLTIFKALSIRGGLRQMTTVLNKMRKAG 187
Query: 249 IWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMA 308
LN N L+ ++ +AL +R G +K +Y+A+
Sbjct: 188 FV----------LNAYSYNGLIHLLIQS--GFCGEALEVYRRMVSEG-LKPSLKTYSALM 234
Query: 309 SVLGREDCIDRFWKVLDEMRSKGYEMEMET---CVKVLGRFSERNMVKEAVDLYEFAMAC 365
LG++ + +L EM G + T C++VLGR + + EA +++
Sbjct: 235 VALGKKRDSEMVMVLLKEMEDLGLRPNVYTFTICIRVLGRAGK---IDEAYEIFRRMDDE 291
Query: 366 KNKPSVNCCTFLLRKIVVSKQLD--MRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGR 423
P + T L+ + + QL+ LF K+ + NG+ + ++L G
Sbjct: 292 GCGPDLVTYTVLIDALCNAGQLENAKELFVKM----KANGHKPDQVIYITLLDKFNDFGD 347
Query: 424 MGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVS 483
+ + ME G++ + + L A DEA D M G + +
Sbjct: 348 LDTFKEFWSQMEADGYMPDVVTFTILVDVLCKARDFDEAFATFDVMRKQGILPNLHTYNT 407
Query: 484 LIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVRE 543
LI G AG ++ A M E G Y ++ ++ + A + ++
Sbjct: 408 LICGLLRAGRIEDALKLLGTM-ESVGVQPTAYTYNIFIDYFGKSGETGKAVETFEK-MKA 465
Query: 544 YDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPP---FVDPFIKYVSKSGTSDD 600
+ P + +L ++A ++ ++++G P + +K SK G D+
Sbjct: 466 KGIVPNIVACNASLYSLAEMGRLREAKTMFNGLRENGLAPDSVTYNMMMKCYSKVGQVDE 525
Query: 601 AIAFLKGMTSKRF-PSMSVVLCLFAAFFQARRHSEAQDLLSK 641
A+ L M P + VV L + ++A R EA + +
Sbjct: 526 AVNLLSEMIRNGCEPDVIVVNSLIDSLYKAGRVDEAWQMFDR 567
Score = 45.4 bits (106), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 77/387 (19%), Positives = 141/387 (36%), Gaps = 67/387 (17%)
Query: 221 LKGIFATGSIDNSIE-------KVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLV--- 270
L G+ G I ++I +V R+ + D+ G + D + F+ +LV
Sbjct: 688 LPGLVKCGQIGDAISIARDFMYQVRFRVNRSFWEDLMGGTLVEAEMDKAIIFAEELVLNG 747
Query: 271 -----KFVVD------KLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDR 319
F++ K E IF ++ ++ G + +SYN + L ++
Sbjct: 748 ICREDSFLIPLVRVLCKHKRELYAYQIFDKFTKKLG-ISPTLASYNCLIGELLEVHYTEK 806
Query: 320 FWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLR 379
W + +M++ G + T +L + + E +LY+ ++ + KP ++
Sbjct: 807 AWDLFKDMKNVGCAPDAFTFNMLLAVHGKSGKITELFELYKEMISRRCKPDAITYNIVIS 866
Query: 380 KIVVSKQLDMRL---FSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEE 436
+ S LD L + V FR T ++ L VGR+
Sbjct: 867 SLAKSNNLDKALDFFYDLVSSDFRP-----TPRTYGPLIDGLAKVGRL------------ 909
Query: 437 GGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDK 496
+EA + M G ++ LI G+ GD +
Sbjct: 910 -----------------------EEAMRLFEEMSDYGCKPNCAIFNILINGYGKIGDTET 946
Query: 497 AADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEEL 556
A F++MV EG + +LV+ C R +D + N ++ L P Y +
Sbjct: 947 ACQLFKRMV-NEGIRPDLKSYTILVDCLCLAGR-VDEALYYFNELKSTGLDPDFIAYNRI 1004
Query: 557 IKNLLVQRGFKDALSLLCLMKDHGFPP 583
I L + ++AL+L M++ G P
Sbjct: 1005 INGLGKSQRMEEALALYNEMRNRGIVP 1031
Score = 38.9 bits (89), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 46/221 (20%), Positives = 84/221 (38%), Gaps = 9/221 (4%)
Query: 287 FFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRF 346
F+ E G++ D ++ + VL + D + D MR +G + T ++
Sbjct: 354 FWSQMEADGYMP-DVVTFTILVDVLCKARDFDEAFATFDVMRKQGILPNLHTYNTLICGL 412
Query: 347 SERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVF---RENG 403
+++A+ L + +P+ + S + K V F + G
Sbjct: 413 LRAGRIEDALKLLGTMESVGVQPTAYTYNIFIDYFGKSGET-----GKAVETFEKMKAKG 467
Query: 404 NVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEAN 463
V N+ L +L +GR+ E + + E G S + + S G+ DEA
Sbjct: 468 IVPNIVACNASLYSLAEMGRLREAKTMFNGLRENGLAPDSVTYNMMMKCYSKVGQVDEAV 527
Query: 464 EFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKM 504
+ M +G + + SLI AG +D+A F +M
Sbjct: 528 NLLSEMIRNGCEPDVIVVNSLIDSLYKAGRVDEAWQMFDRM 568
>gi|255556157|ref|XP_002519113.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223541776|gb|EEF43324.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 486
Score = 72.8 bits (177), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 74/292 (25%), Positives = 126/292 (43%), Gaps = 23/292 (7%)
Query: 317 IDRFWKVLDEMRSKGYEMEMETC-------VKVLGRFSERNMVKEAVDLY--EFAMACKN 367
ID K++ +RS+G + TC K G ++ + +E ++ E K
Sbjct: 176 IDDGLKIVRLLRSRGISPLISTCNFLVSWVSKCKGCYAGYGVFREVFEVNDNEGKRVIKV 235
Query: 368 KPSVNCCTFLLRKIVVSKQLDM--RLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMG 425
+P+V+ L+ +L+M ++S++ R F N + ++L +V + VGR
Sbjct: 236 RPNVHTFNELMMGFYRDGELEMVEEVWSEMER-FECVPNGFSYSVLMTVF---LDVGRTK 291
Query: 426 ECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLI 485
E K+ + M G + + G+ ++A E ME +G + + LI
Sbjct: 292 EIEKLWEEMRAKGIKGDVVAYNTVIGGFCKIGEIEKAEELSREMELNGVEANCVTFEHLI 351
Query: 486 KGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYD 545
G+C GD+D A F+ MV K G G +D+L+ C K R +A + + +R
Sbjct: 352 NGYCSVGDVDSAILVFKHMVRK-GFRAEGSVMDVLIGGLCEKRRVSEALEIMRIAMRNDG 410
Query: 546 LKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPP-------FVDPFIK 590
+ +YE LIK L +AL L M GF P F+D ++K
Sbjct: 411 FRLSGKSYELLIKGLCKDGKMDEALKLQAEMVGGGFEPNFEIYGAFIDGYMK 462
Score = 45.8 bits (107), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 55/212 (25%), Positives = 99/212 (46%), Gaps = 21/212 (9%)
Query: 303 SYNAMASV---LGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDL- 358
SY+ + +V +GR I++ W +EMR+KG + ++ V+G F + +++A +L
Sbjct: 276 SYSVLMTVFLDVGRTKEIEKLW---EEMRAKGIKGDVVAYNTVIGGFCKIGEIEKAEELS 332
Query: 359 YEFAMACKNKPSVNCCTF--LLRKIVVSKQLD--MRLFSKVVRV-FRENGNVLTDAMLNS 413
E + N NC TF L+ +D + +F +VR FR G+V+ +
Sbjct: 333 REMEL---NGVEANCVTFEHLINGYCSVGDVDSAILVFKHMVRKGFRAEGSVM-----DV 384
Query: 414 VLKALISVGRMGECNKILK-AMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEAS 472
++ L R+ E +I++ AM GF S + L GK DEA + M
Sbjct: 385 LIGGLCEKRRVSEALEIMRIAMRNDGFRLSGKSYELLIKGLCKDGKMDEALKLQAEMVGG 444
Query: 473 GSDVGDKMWVSLIKGHCVAGDLDKAADCFQKM 504
G + +++ + I G+ G+ + AA ++M
Sbjct: 445 GFEPNFEIYGAFIDGYMKLGNEEMAAMLRKEM 476
>gi|255660920|gb|ACU25629.1| pentatricopeptide repeat-containing protein [Aloysia virgata]
Length = 484
Score = 72.8 bits (177), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 89/391 (22%), Positives = 161/391 (41%), Gaps = 49/391 (12%)
Query: 258 LRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCI 317
+R+L +F ++LV V+ + AL FFRW E S +H+ ++ + +LGR +
Sbjct: 3 IRNLVPSFDHELVYNVLHG-SKTSEHALQFFRWVERSNLFEHNRETHLKIIEILGRASKL 61
Query: 318 DRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFL 377
+ +L +M KG E + + V ++ + + +V+E+V
Sbjct: 62 NHARCILLDMPKKGLEWDEDMWVLMIDSYGKEGIVQESV--------------------- 100
Query: 378 LRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEG 437
+LF K+ E G T +++ K ++ GR + M
Sbjct: 101 ------------KLFQKM----EELGVERTIKSYDALFKVILRRGRFMMAKRYFNKMLSE 144
Query: 438 GFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKA 497
G + + + + + +GK + AN F + M++ + ++I G+ +D+A
Sbjct: 145 GIEPTRHXFNVMIWGFFLSGKVETANRFFEDMKSREISPDVITYNTMINGYYRVKKMDEA 204
Query: 498 ADCFQKMVEKEGTSHAGYAI--DLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEE 555
F VE +G + + L+ Y S ++ DA + V ++ Y +KP TY
Sbjct: 205 EKYF---VEMKGRNIEPTVVTYTTLIKGYVSVDQVDDALRLVEE-MKGYGIKPNAITYST 260
Query: 556 LIKNLLVQRGFKDALSLLCLMKDHGFPPFVDP-FIKYVS---KSGTSDDAIAFLKGMTSK 611
L+ L +A S+L M D P + F + +S K+G D A LK M
Sbjct: 261 LLPGLCNAEKMSEARSILKEMVDKYMAPTDNSIFXRLISSQCKTGNLDAAADVLKAMIRL 320
Query: 612 RFPSMSVVL-CLFAAFFQARRHSEAQDLLSK 641
P+ + L F +A +H +A LL K
Sbjct: 321 SVPTEAGHYGVLIENFCKAGQHDKAVKLLDK 351
Score = 47.8 bits (112), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 106/496 (21%), Positives = 194/496 (39%), Gaps = 77/496 (15%)
Query: 128 FTHEMVLKVLKNLESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLV 187
F HE+V VL ++S + A +FF WV + +T+ ++ I+G + ++
Sbjct: 10 FDHELVYNVLHGSKTS-EHALQFFRWVERSNLFEHNRETHLKIIEILGRASKLNHARCIL 68
Query: 188 DVMKKKGYGVASHVRNKMTEKFEKEGLESDLEKLKGIFATGSIDNSIEKVASRICKVVRS 247
M KKG + M + + KEG+ + KL +E++
Sbjct: 69 LDMPKKGLEWDEDMWVLMIDSYGKEGIVQESVKLF---------QKMEELG--------- 110
Query: 248 DIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAM 307
VER ++ + F V+ + G F + E ++ +N M
Sbjct: 111 ------VERTIKSYDALFK------VILRRGRFMMAKRYFNKMLSEG--IEPTRHXFNVM 156
Query: 308 A---SVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMA 364
+ G+ + +RF+ ++M+S+ ++ T ++ + + EA + Y M
Sbjct: 157 IWGFFLSGKVETANRFF---EDMKSREISPDVITYNTMINGYYRVKKMDEA-EKYFVEMK 212
Query: 365 CKN-KPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGR 423
+N +P+V T L++ V Q+D L ++V + G +++L L + +
Sbjct: 213 GRNIEPTVVTYTTLIKGYVSVDQVDDAL--RLVEEMKGYGIKPNAITYSTLLPGLCNAEK 270
Query: 424 MGECNKILKAMEEGGFIASSNMKSKIAFRLSSA----GKKDEANEFMDHMEASGSDVGDK 479
M E ILK M + + N I RL S+ G D A + + M
Sbjct: 271 MSEARSILKEMVDKYMAPTDN---SIFXRLISSQCKTGNLDAAADVLKAMIRLSVPTEAG 327
Query: 480 MWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHN 539
+ LI+ C AG DKA K++EK D+++ + + A +N
Sbjct: 328 HYGVLIENFCKAGQHDKAVKLLDKLIEK----------DIILRPQSTLHMEPSA----YN 373
Query: 540 CVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPFIKYVSKSGTSD 599
+ EY T E + L++ G +D +L L++ H S+ G+ D
Sbjct: 374 PMIEYLCNNGQTAKAEALVRQLLKLGVQDPTALNTLIRGH-------------SQEGSPD 420
Query: 600 DAIAFLKGMTSKRFPS 615
A LK M ++ S
Sbjct: 421 SAFELLKIMLRRKVDS 436
>gi|449460167|ref|XP_004147817.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g19290-like [Cucumis sativus]
Length = 942
Score = 72.8 bits (177), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 112/485 (23%), Positives = 185/485 (38%), Gaps = 113/485 (23%)
Query: 258 LRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGRED-- 315
L +L+ +FSN+L+ V+ L P +L FF+ A + + D SSY + +L R
Sbjct: 89 LANLSFSFSNELMDLVLRNLRLNPDASLEFFKLASKQPKFRPDVSSYCKIVHILSRARMY 148
Query: 316 -------------CIDRFW--KVLDEMRSKGYEMEMETCV--KVLGRFSERNMVKEAVDL 358
C + + V DE+ S E V +L F+E+ M K A+ +
Sbjct: 149 KEVRVYLNELVVLCKNNYIASAVWDELVSVYREFSFSPTVFDMILKVFAEKGMTKFALCV 208
Query: 359 YEFAMACKNKPSVNCCTFLLRKIV----------VSKQL-------DMRLFSKVVRVFRE 401
++ C PS+ C LL +V V +Q+ D+ ++ +V + +
Sbjct: 209 FDNMGKCGRVPSLRSCNSLLSNLVQNGEAFKALLVYEQMIALGILPDIFSYTIMVNAYCK 268
Query: 402 NG-------------------NVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIAS 442
G NV+T NS++ +S+G + K+L M E G +
Sbjct: 269 EGRVDEAFNFVKEMERSCCEPNVVT---YNSLIDGYVSLGDVCGAKKVLALMSEKGIPEN 325
Query: 443 SN------------------------MKSKIAF-----------RLSSAGKKDEANEFMD 467
S M K F +AG+ D+A D
Sbjct: 326 SRTYTLLIKGYCKRGQMEQAEKLIGCMMEKNLFVDEHVYGVLIHAYCTAGRVDDALRIRD 385
Query: 468 HMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSK 527
M G + + SLI G+C G ++KAA+ M + Y + L++ +C +
Sbjct: 386 AMLKVGLKMNTVICNSLINGYCKLGHVNKAAEVLVSM-KDWNLKPDSYGYNTLLDGFCKQ 444
Query: 528 N---RAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPP- 583
+A C +HN + + TY L+KNL + AL + LM G P
Sbjct: 445 EDFIKAFKLCDEMHNKGVNFTV----VTYNTLLKNLFHVGHVEHALHIWNLMHKRGVAPN 500
Query: 584 ------FVDPFIKYVSKSGTSDDAIAFLKGMTSKRFP-SMSVVLCLFAAFFQARRHSEAQ 636
+D F K GT D A+ K SK F S+++ + F + + +AQ
Sbjct: 501 EVTYCTLLDAFFKV----GTFDRAMMIWKDALSKGFTKSITLYNTMICGFCKMEKLVQAQ 556
Query: 637 DLLSK 641
++ K
Sbjct: 557 EIFLK 561
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 80/179 (44%), Gaps = 3/179 (1%)
Query: 412 NSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEA 471
N + L + + +IL + GF + + S+ GK +EA D M
Sbjct: 750 NIAITGLCKSKNIDDVRRILSDLLLKGFCPDNYTYCSLIHACSAVGKVNEAFCLRDDMIN 809
Query: 472 SGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAI 531
+G ++ +LI G C +G+LD+A F K+ K G S + L++ YC R
Sbjct: 810 AGLVPNIVVYNALINGLCKSGNLDRARRLFNKLARK-GLSPTVVTYNTLIDGYCKGGRTT 868
Query: 532 DACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLC-LMKDHGFPPFVDPFI 589
+A + + + +RE + P TY LI L ++ + ++ LL +MK +DP +
Sbjct: 869 EALE-LKDKMREEGICPSSITYSTLIHGLYMEGKSEQSVGLLNEMMKAGKGSSVMDPLV 926
>gi|224065693|ref|XP_002301924.1| predicted protein [Populus trichocarpa]
gi|222843650|gb|EEE81197.1| predicted protein [Populus trichocarpa]
Length = 709
Score = 72.8 bits (177), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 108/526 (20%), Positives = 215/526 (40%), Gaps = 55/526 (10%)
Query: 121 LELSGVVFTHEMVLKVLKNLESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLV 180
L+ + F++E++ +L + + ++ + + L + + L+ TYN ++ + +
Sbjct: 159 LQKHNLCFSYELLYSILIH---ALGQSEKLYEAFLLSQKQNLTPLTYNALISACARNNDI 215
Query: 181 QEFWGLVDVMKKKGYGVASHVRNKMTEKFEKEGLESDLEKLKGIFATGSIDNSIEKVASR 240
++ L+ M++ GY SDL I + +N +S
Sbjct: 216 EKALNLICRMREDGY-------------------PSDLVNYSLIIRSLMKNNRAN--SSI 254
Query: 241 ICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHD 300
+ K+ R +++R +++V ND++ K GD KAL F + SG
Sbjct: 255 LQKIYR------EIDRDKLEVDVQLWNDIIVGFA-KAGDL-DKALEFLGVVQGSGL---S 303
Query: 301 ESSYNAMASVLGREDC--IDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDL 358
+ + + G +C + + +EMR G + +L + + ++++A
Sbjct: 304 VKTATLVTVIWGLGNCGRTEEAEAIFEEMRDNGLQPRTRAYNALLRGYVKAGLLRDA--- 360
Query: 359 YEFAMACKNK----PSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDA-MLNS 413
EF ++ + P+ + L+ +++ + +++V E NV +A + +
Sbjct: 361 -EFVVSEMERSGVLPNEQTYSLLIDAYGNAERWES---ARIVLKEMEASNVQPNAYVFSR 416
Query: 414 VLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASG 473
+L + G + ++L+ ME+ G + + D A D M + G
Sbjct: 417 ILASYRDKGEWQKTFQVLREMEDSGVRPDRIFYNVLIDTFGKFNCLDHAMATFDRMLSEG 476
Query: 474 SDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDA 533
+ W +L+ HC AG D+A + F++M+EK G ++++N++ + R D
Sbjct: 477 IEPDTITWNTLVDCHCKAGKHDRAEELFEEMMEK-GYLPCNTTFNIMINSFGDQERWDDV 535
Query: 534 CKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPP---FVDPFIK 590
+ N +R L P TY LI F DA+ L MK G P + +
Sbjct: 536 KNLLTN-MRSQGLLPNAVTYTTLIDIYGKSGRFDDAIECLDDMKAAGLKPSSTMYNALLN 594
Query: 591 YVSKSGTSDDAIAFLKGMTSKRF-PSMSVVLCLFAAFFQARRHSEA 635
++ G SD A++ M PS+ + L AF + RR EA
Sbjct: 595 AYAQRGLSDQAVSAFWAMRDDGLKPSLLALNSLINAFGKDRRDVEA 640
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 102/492 (20%), Positives = 181/492 (36%), Gaps = 76/492 (15%)
Query: 98 ESDFTVVSDIFYKFSDVNDISKQLELSGVVFTHEMVLKVLKNLESSPDEARRFFNWVLEK 157
E D + +DI F+ D+ K LE GVV
Sbjct: 268 EVDVQLWNDIIVGFAKAGDLDKALEFLGVV------------------------------ 297
Query: 158 ESERLSSKTYNLMLRIVGVH--GLVQEFWGLVDVMKKKGYGVASHVRNKMTEKFEKEGLE 215
+ LS KT L+ I G+ G +E + + M+ G + N + + K GL
Sbjct: 298 QGSGLSVKTATLVTVIWGLGNCGRTEEAEAIFEEMRDNGLQPRTRAYNALLRGYVKAGLL 357
Query: 216 SDLEKLKGIFATGSIDNSIEKVASRICKVVRSDIWGDD--VERQLRDLNVTFSNDLVKFV 273
D E + + + + + I ++ W V +++ NV + + +
Sbjct: 358 RDAEFVVSEMERSGVLPNEQTYSLLIDAYGNAERWESARIVLKEMEASNVQPNAYVFSRI 417
Query: 274 VDKLGD--EPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKG 331
+ D E +K R E+SG V+ D YN + G+ +C+D D M S+G
Sbjct: 418 LASYRDKGEWQKTFQVLREMEDSG-VRPDRIFYNVLIDTFGKFNCLDHAMATFDRMLSEG 476
Query: 332 YEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRL 391
E + T ++ + A +L+E M
Sbjct: 477 IEPDTITWNTLVDCHCKAGKHDRAEELFEEMM---------------------------- 508
Query: 392 FSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAF 451
E G + + N ++ + R + +L M G + ++ + +
Sbjct: 509 ---------EKGYLPCNTTFNIMINSFGDQERWDDVKNLLTNMRSQGLLPNAVTYTTLID 559
Query: 452 RLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTS 511
+G+ D+A E +D M+A+G M+ +L+ + G D+A F M +G
Sbjct: 560 IYGKSGRFDDAIECLDDMKAAGLKPSSTMYNALLNAYAQRGLSDQAVSAFWAM-RDDGLK 618
Query: 512 HAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALS 571
+ A++ L+N + R ++A V ++E DLKP TY L+K L++ F S
Sbjct: 619 PSLLALNSLINAFGKDRRDVEAF-VVLQYMKENDLKPDVVTYTTLMKALILVEKFDKVPS 677
Query: 572 LLCLMKDHGFPP 583
+ M G P
Sbjct: 678 VYEEMILSGCTP 689
>gi|168055632|ref|XP_001779828.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162668740|gb|EDQ55341.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 730
Score = 72.8 bits (177), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 93/438 (21%), Positives = 173/438 (39%), Gaps = 52/438 (11%)
Query: 273 VVDKLGDEPK--KALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSK 330
++ LG E + KAL F W +S + D + M +LGRE + ++ +R +
Sbjct: 52 IMKGLGREGQWNKALEVFNWMRQSVNFRPDGVTIAVMLRILGRESQLTTVSRLFKSLREE 111
Query: 331 GYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSV---NCCTFLLRKIVVSKQL 387
GY +++ ++ S KEA+ +E +PS+ N L K S +
Sbjct: 112 GYPLDVYAYTSLISALSRNRKFKEALGFFEQMKEAGPQPSLVTYNVIIDLYGKKGRSWEN 171
Query: 388 DMRLFSKV----------------------------VRVFRE--NGNVLTD-AMLNSVLK 416
+ LF ++ +F + + N D N++L
Sbjct: 172 ILELFEEMKAQGIQPDEYTYNTAITACASGSLCEEATELFTQMKSSNCTPDRVTYNALLD 231
Query: 417 ALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDV 476
G E +LK ME G + + +++ AG + A E D M + G +
Sbjct: 232 VYGKAGWYNEAANVLKEMESAGCLPNIVTYNELLSAFGRAGLCNAAAEMKDSMVSKGIEP 291
Query: 477 GDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKF 536
+ SL+ + AG +++A + + +M T ++ + + L+ + KN+
Sbjct: 292 DVFTYTSLLSAYSRAGKVEQAMEIYNQMRTSNCTPNS-FTFNALIGMH-GKNKNFSEMMV 349
Query: 537 V----HNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPF---I 589
+ C E D+ W++ KN + + + L + MK GF P F I
Sbjct: 350 IFEDMQACGVEPDIVTWNSLLGAFGKNGM----YSEVLKVFRGMKKAGFEPDKATFNILI 405
Query: 590 KYVSKSGTSDDAIAFLKGMTSKR-FPSMSVVLCLFAAFFQARRHSEAQDLLSKCPR--YV 646
+ + G+SD A++ GM P ++ L AA + R A+ +L + R Y
Sbjct: 406 EAYGRCGSSDQALSIYDGMLQAGCTPDLATFNTLLAALAREGRWEHAELILDELNRSSYK 465
Query: 647 RNHADVLNLLYSKKSGGD 664
N ++L++ +GG+
Sbjct: 466 PNDIAYASMLHAYANGGE 483
Score = 38.9 bits (89), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 44/189 (23%), Positives = 77/189 (40%), Gaps = 17/189 (8%)
Query: 258 LRDLNVTFSNDLVKFVV-----DKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLG 312
L + V F+ L+K V L DE + A + R G++ D S++NAM S+ G
Sbjct: 494 LHTIYVPFTKILLKTFVLVYSKCSLVDEAEDAFLAMR---HHGYLS-DTSTFNAMISMYG 549
Query: 313 REDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVN 372
++ +D+ +RS G E ++ T ++G + M ++ MA P +
Sbjct: 550 KKGMMDKATDTFALLRSTGLEPDVVTYNCLMGMYGREGMYRKCEATLRECMAAGQTPDLV 609
Query: 373 CCTFLLRKIVVSKQLDMRLFSKVVRVFRE---NGNVLTDAMLNSVLKALISVGRMGECNK 429
++ QL S R+F E NG N+ + ++ G E
Sbjct: 610 SYNTVIFSYSKHGQL-----SSATRIFHEMVSNGIQPDSFTYNTFVGCYVNGGMFPEALS 664
Query: 430 ILKAMEEGG 438
++K M + G
Sbjct: 665 VVKHMHKTG 673
>gi|147788022|emb|CAN69338.1| hypothetical protein VITISV_032632 [Vitis vinifera]
Length = 585
Score = 72.8 bits (177), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 77/357 (21%), Positives = 149/357 (41%), Gaps = 26/357 (7%)
Query: 297 VKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAV 356
++ D +++ + L E I + D+M +G++ + T ++ + A+
Sbjct: 133 LQPDTATFTTLIRGLCVEGKIGDALHLFDKMIGEGFQPNVVTYGTLINGLCKVGNTNAAI 192
Query: 357 DLYEFAMACKNKPSVNCCTFLLRKIVVSKQLD--MRLFSKVVRVFRENGNVLTDAMLN-- 412
L +P V T ++ + +Q+ LFSK+V G ++ +
Sbjct: 193 RLLRSMEQGNCQPDVVVYTSIIDSLCKDRQVTEAFNLFSKMV------GQGISPDIFTYT 246
Query: 413 SVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEAS 472
S++ +L ++ +L M + + S + L GK EA++ +D M
Sbjct: 247 SLIHSLCNLCEWKHVTTLLNQMINSKIMPDVVIFSTVVDALCKEGKITEAHDVVDMMIIR 306
Query: 473 GSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDL-----LVNTYCSK 527
G + + +L+ GHC+ ++D+A F MV H GYA ++ L+N YC
Sbjct: 307 GVEPNVVTYNALMDGHCLQSEMDEAVKVFDTMV------HNGYAPNVISYNTLINGYCKI 360
Query: 528 NRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDP 587
R +D ++ + + +L P TY L+ L +DA++L M HG P +
Sbjct: 361 QR-MDKATYLFEEMCQKELIPNTVTYNTLMHGLCHVGRLQDAIALFHEMVAHGQIPDLAT 419
Query: 588 F---IKYVSKSGTSDDAIAFLKGMTSKRF-PSMSVVLCLFAAFFQARRHSEAQDLLS 640
+ + Y+ K D+A+A LK + P + + + +A A+D+ S
Sbjct: 420 YRILLDYLCKKSHLDEAMALLKTIEGSNMDPDIQIYTIVIDGMCRAGELEAARDIFS 476
Score = 49.7 bits (117), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 63/131 (48%), Gaps = 5/131 (3%)
Query: 515 YAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLC 574
Y +++L+N++C NR A + + + L+P T+ LI+ L V+ DAL L
Sbjct: 103 YTLNILINSFCHLNRPGFAFSVLAK-ILKLGLQPDTATFTTLIRGLCVEGKIGDALHLFD 161
Query: 575 LMKDHGFPPFVDPF---IKYVSKSGTSDDAIAFLKGMTSKRF-PSMSVVLCLFAAFFQAR 630
M GF P V + I + K G ++ AI L+ M P + V + + + R
Sbjct: 162 KMIGEGFQPNVVTYGTLINGLCKVGNTNAAIRLLRSMEQGNCQPDVVVYTSIIDSLCKDR 221
Query: 631 RHSEAQDLLSK 641
+ +EA +L SK
Sbjct: 222 QVTEAFNLFSK 232
Score = 49.3 bits (116), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 63/288 (21%), Positives = 111/288 (38%), Gaps = 16/288 (5%)
Query: 300 DESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLY 359
D ++ + L +E I V+D M +G E + T ++ ++ + EAV ++
Sbjct: 276 DVVIFSTVVDALCKEGKITEAHDVVDMMIIRGVEPNVVTYNALMDGHCLQSEMDEAVKVF 335
Query: 360 EFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGN---VLTDAMLNSVLK 416
+ + P+V L+ +++D K +F E + N+++
Sbjct: 336 DTMVHNGYAPNVISYNTLINGYCKIQRMD-----KATYLFEEMCQKELIPNTVTYNTLMH 390
Query: 417 ALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDV 476
L VGR+ + + M G I + L DEA + +E S D
Sbjct: 391 GLCHVGRLQDAIALFHEMVAHGQIPDLATYRILLDYLCKKSHLDEAMALLKTIEGSNMDP 450
Query: 477 GDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKF 536
+++ +I G C AG+L+ A D F + K G +++N C + +A K
Sbjct: 451 DIQIYTIVIDGMCRAGELEAARDIFSNLSSK-GLRPNVRTYTIMINGLCRRGLLDEANKL 509
Query: 537 VHNCVREYD---LKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGF 581
E D P TY + + LL + A+ LL M GF
Sbjct: 510 ----FMEMDGNGCSPDGCTYNTITQGLLQNKEALRAIQLLQEMLARGF 553
>gi|222628656|gb|EEE60788.1| hypothetical protein OsJ_14372 [Oryza sativa Japonica Group]
Length = 748
Score = 72.4 bits (176), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 72/346 (20%), Positives = 137/346 (39%), Gaps = 7/346 (2%)
Query: 297 VKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAV 356
++ + +YN++ +V EM S G + C + N +KEA
Sbjct: 223 IRPNNKTYNSLIYGYSTAGMWKESVRVFKEMSSSGLIPCVVNCNSFIHALCRHNRIKEAK 282
Query: 357 DLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLK 416
D+++ + KP++ + LL + +V + G V N ++
Sbjct: 283 DIFDSMVLKGPKPNIISYSTLLHGYAAEGCFAN--MNSLVNLMVSKGIVPNHRFFNILIN 340
Query: 417 ALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDV 476
A G M + I + M+ G I + + + L G+ D+A +HM G
Sbjct: 341 AYARCGMMDKAMLIFEDMQNKGMIPDTVTFATVISSLCRIGRLDDALHKFNHMVDIGVPP 400
Query: 477 GDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKF 536
+ ++ LI+G C G+L KA + +M+ K+ ++N + R + K
Sbjct: 401 SEAVYRCLIQGCCNHGELVKAKELISEMMNKDIPPPGVKYFSSIINNLFKEGRVAEG-KD 459
Query: 537 VHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPP---FVDPFIKYVS 593
+ + + + +P T+ L++ + ++A +LL M G P +
Sbjct: 460 IMDLMVQTGQRPNVVTFNSLMEGYCLVGNMEEAFALLDAMASIGIEPNCYIYGTLVDGYC 519
Query: 594 KSGTSDDAIAFLKGMTSKRFPSMSVVL-CLFAAFFQARRHSEAQDL 638
K+G DDA+ + M K SV+ + FQARR + A+ +
Sbjct: 520 KNGRIDDALTVFRDMLHKGVKPTSVLYNIILHGLFQARRTTAAKKM 565
>gi|356561933|ref|XP_003549231.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At3g62470, mitochondrial-like [Glycine max]
Length = 510
Score = 72.4 bits (176), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 85/352 (24%), Positives = 144/352 (40%), Gaps = 11/352 (3%)
Query: 240 RICKVVRSDIWGD-DVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVK 298
R+CKV+ D ++E L + V S+DLV V+ + K A FF A +
Sbjct: 38 RVCKVIDELFALDRNMEVVLDECGVRLSHDLVVDVLQRFKHARKPAFRFFCXAGKRPGFA 97
Query: 299 HDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDL 358
HD +YN M VLGR + L+EM KG + MET + F+E K+ V +
Sbjct: 98 HDSRTYNFMMCVLGRTRQFETMVAKLEEMGEKGL-LTMETFSIAIKAFAEAKQRKKEVGI 156
Query: 359 YEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAM--LNSVLK 416
++ K V+ FLL + +K L + VF + + T ++ +L
Sbjct: 157 FDLMKKYGFKVGVDVINFLLDSLSTAK-----LGKEAQAVFEKLKDRFTPSLQTYTILLS 211
Query: 417 ALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDV 476
+ + E ++ M + GF + + L KK +A + + M+A G
Sbjct: 212 GWCRLKNLLEAGRVWNEMIDRGFNPDIVAHNVMLEGLLKCKKKSDAIKLFEIMKAKGPSP 271
Query: 477 GDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKF 536
+ + +I+ C + +A + F MV++ A L+ T + + +D
Sbjct: 272 NVRSYTIMIQDFCKQKLMGEAIEYFDVMVDRGCQPDAALYTCLI--TGFGRQKKMDMVYS 329
Query: 537 VHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPF 588
+ +RE P TY LIK + Q DA+ + M G P + +
Sbjct: 330 LLKEMRERGCPPDGRTYNALIKLMTSQHMPDDAVRIYKKMIQSGIKPTIHTY 381
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 87/412 (21%), Positives = 159/412 (38%), Gaps = 81/412 (19%)
Query: 121 LELSGVVFTHEMVLKVLKNLESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVGV---- 176
L+ GV +H++V+ VL+ + + A RFF ++ S+TYN M+ ++G
Sbjct: 57 LDECGVRLSHDLVVDVLQRFKHARKPAFRFFCXAGKRPGFAHDSRTYNFMMCVLGRTRQF 116
Query: 177 ------------HGLV------------------QEFWGLVDVMKKKGYGVASHVRNKM- 205
GL+ ++ G+ D+MKK G+ V V N +
Sbjct: 117 ETMVAKLEEMGEKGLLTMETFSIAIKAFAEAKQRKKEVGIFDLMKKYGFKVGVDVINFLL 176
Query: 206 ----TEKFEKEGLESDLEKLKGIFATGSIDNSIEKVASRICKVVR----SDIWGDDVERQ 257
T K KE ++ EKLK F +I + S C++ +W + ++R
Sbjct: 177 DSLSTAKLGKEA-QAVFEKLKDRFTPSLQTYTI--LLSGWCRLKNLLEAGRVWNEMIDRG 233
Query: 258 LRD------------LNVTFSNDLVKF--VVDKLGDEPK------------------KAL 285
L +D +K ++ G P +A+
Sbjct: 234 FNPDIVAHNVMLEGLLKCKKKSDAIKLFEIMKAKGPSPNVRSYTIMIQDFCKQKLMGEAI 293
Query: 286 IFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGR 345
+F + G + D + Y + + GR+ +D + +L EMR +G + T ++
Sbjct: 294 EYFDVMVDRG-CQPDAALYTCLITGFGRQKKMDMVYSLLKEMRERGCPPDGRTYNALIKL 352
Query: 346 FSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNV 405
+ ++M +AV +Y+ + KP+++ +++ V+K +M ++ G
Sbjct: 353 MTSQHMPDDAVRIYKKMIQSGIKPTIHTYNMIMKSYFVTKNYEMG--HEIWDEMHPKGCC 410
Query: 406 LTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAG 457
D + LI R GE K L+ M E G A +K A +S G
Sbjct: 411 PDDNSYIVYIGGLIRQDRSGEACKYLEEMLEKGMKALKLDYNKFASDISKTG 462
>gi|224130790|ref|XP_002328377.1| predicted protein [Populus trichocarpa]
gi|222838092|gb|EEE76457.1| predicted protein [Populus trichocarpa]
Length = 688
Score = 72.4 bits (176), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 78/361 (21%), Positives = 151/361 (41%), Gaps = 13/361 (3%)
Query: 287 FFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRF 346
F+ E++G K D +YN + L ++ ++ L EM +G ++ T +L
Sbjct: 290 LFKRMEQNG-CKPDVVTYNIIIDSLYKDRLVNDAADFLSEMVDQGIPPDVVTYTTILHGL 348
Query: 347 SERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLD--MRLFSKVVRVFRENGN 404
+ EA+ L++ KP V ++ + + ++ M S++V + G
Sbjct: 349 CYLGQLNEAIRLFKKMEQKGCKPDVVAYNTIIDSLCKDRLVNDAMEFLSEMV----DRGI 404
Query: 405 VLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANE 464
+++L ++G++ E ++ K M + ++ S + L G EA
Sbjct: 405 PPNAVTYSTILHGFCNLGQLDEATQLFKEMVGRNVMPNTLTFSILVDGLCQEGMVSEARW 464
Query: 465 FMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTY 524
+ M G + + +L+ G+C+ +++A F+ MV K G + ++ ++L+N Y
Sbjct: 465 VFETMTEKGVEPNIYTYNALMNGYCLRCKMNEARKVFEIMVGK-GCAPDLHSYNILINGY 523
Query: 525 CSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPF 584
C+ R +D K + + L P TY ++K L DA L M G P
Sbjct: 524 CNSRR-MDKAKALLTQMSVKKLTPNTVTYNTIMKGLCYVGRLLDAQELFKKMCSSGMLPT 582
Query: 585 VDPF---IKYVSKSGTSDDAIAFLKGMTSKRF-PSMSVVLCLFAAFFQARRHSEAQDLLS 640
+ + + + K G D+A+ K M K+ P + + L F + A+ L S
Sbjct: 583 LMTYSILLNGLCKHGHLDEALKLFKSMKEKKLEPDIILYTILIEGMFIGGKLEVAKGLFS 642
Query: 641 K 641
K
Sbjct: 643 K 643
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 80/379 (21%), Positives = 132/379 (34%), Gaps = 78/379 (20%)
Query: 297 VKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAV 356
V H S N + + L R + +D V +M G + ++ T ++ +K AV
Sbjct: 124 VTHTVYSLNILINCLCRLNHVDFAVSVWGKMFKLGIQPDVITFTTLINGVCNEGKIKVAV 183
Query: 357 DLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENG---NVLT------ 407
+LY + ++P V L+ + S +M + V + +NG NV+T
Sbjct: 184 ELYNEMVRSGHEPDVISYNTLINGLCNSGNTNMAV--HVFKKMEQNGCKPNVVTYNTIID 241
Query: 408 ---------DAM-----------------LNSVLKALISVGRMGECNKILKAMEEGGFIA 441
DAM NS++ L +G++ E ++ K ME+ G
Sbjct: 242 SLCKDRLVNDAMDFLSEMVGRGIPPDAITYNSIVHGLCCLGQLNEATRLFKRMEQNGCKP 301
Query: 442 SSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCF 501
+ I L ++A +F+ M G + +++ G C G L++A F
Sbjct: 302 DVVTYNIIIDSLYKDRLVNDAADFLSEMVDQGIPPDVVTYTTILHGLCYLGQLNEAIRLF 361
Query: 502 QKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLL 561
+KM +K CK P Y +I +L
Sbjct: 362 KKMEQK-------------------------GCK------------PDVVAYNTIIDSLC 384
Query: 562 VQRGFKDALSLLCLMKDHGFPPFVDPF---IKYVSKSGTSDDAIAFLKGMTSKR-FPSMS 617
R DA+ L M D G PP + + G D+A K M + P+
Sbjct: 385 KDRLVNDAMEFLSEMVDRGIPPNAVTYSTILHGFCNLGQLDEATQLFKEMVGRNVMPNTL 444
Query: 618 VVLCLFAAFFQARRHSEAQ 636
L Q SEA+
Sbjct: 445 TFSILVDGLCQEGMVSEAR 463
Score = 49.7 bits (117), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 56/269 (20%), Positives = 112/269 (41%), Gaps = 9/269 (3%)
Query: 254 VERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGR 313
V+R + VT+S L F LG + +F + V + +++ + L +
Sbjct: 400 VDRGIPPNAVTYSTILHGFC--NLGQLDEATQLFKEMVGRN--VMPNTLTFSILVDGLCQ 455
Query: 314 EDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNC 373
E + V + M KG E + T ++ + R + EA ++E + P ++
Sbjct: 456 EGMVSEARWVFETMTEKGVEPNIYTYNALMNGYCLRCKMNEARKVFEIMVGKGCAPDLHS 515
Query: 374 CTFLLRKIVVSKQLD-MRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILK 432
L+ S+++D + + V + N +T N+++K L VGR+ + ++ K
Sbjct: 516 YNILINGYCNSRRMDKAKALLTQMSVKKLTPNTVT---YNTIMKGLCYVGRLLDAQELFK 572
Query: 433 AMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAG 492
M G + + S + L G DEA + M+ + ++ LI+G + G
Sbjct: 573 KMCSSGMLPTLMTYSILLNGLCKHGHLDEALKLFKSMKEKKLEPDIILYTILIEGMFIGG 632
Query: 493 DLDKAADCFQKMVEKEGTSHAGYAIDLLV 521
L+ A F K+ +G G ++++
Sbjct: 633 KLEVAKGLFSKL-SADGIQPPGRTYNVMI 660
>gi|147857907|emb|CAN80394.1| hypothetical protein VITISV_001596 [Vitis vinifera]
Length = 356
Score = 72.4 bits (176), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 85/388 (21%), Positives = 143/388 (36%), Gaps = 70/388 (18%)
Query: 233 SIEKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAE 292
+I V I +VR D + +ER L L ++ ++DLV V+ + ++L FF WA
Sbjct: 2 TIFAVVHHISAIVRRDFY---LERTLNKLPISVTSDLVYRVLRSCPNSGTESLRFFNWAR 58
Query: 293 ESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMV 352
+ Y + L R WK+ +M++ + ++ F + +V
Sbjct: 59 SHXSYQPTTLEYEELLKTLARTKQFQPMWKIAHQMQT----LSPTVVSSIIEEFGKHGLV 114
Query: 353 KEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLN 412
+AV+++ K K ++NC + + V+ N
Sbjct: 115 DQAVEVFN-----KAKSALNC-------------------PQTIEVY------------N 138
Query: 413 SVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEAS 472
S+L AL V +++ M G + S + +AGK EA +F++ M
Sbjct: 139 SLLFALCEVKYFHGAYALIRRMIRKGVTPNKQTYSVLVNGWCAAGKMKEAQDFLEEMSRK 198
Query: 473 GSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAID 532
G + + L+ G AG L+ A + K VE L+ + +R+I
Sbjct: 199 GFNPPVRGRDLLVDGLLNAGYLEAAKEMLAKRVE-------------LMRPFRILHRSI- 244
Query: 533 ACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFP---PFVDPFI 589
E +P+ + Y +IK L F DA MK G P P I
Sbjct: 245 ----------EDGHRPFPSLYAPIIKALCRNGQFDDAFCFFSDMKVKGHPPNRPVYTMLI 294
Query: 590 KYVSKSGTSDDAIAFLKGMTSKRFPSMS 617
+ G DA +L MT +S
Sbjct: 295 TMCGRGGRFVDAANYLVEMTELNLTPIS 322
Score = 40.4 bits (93), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 42/89 (47%), Gaps = 4/89 (4%)
Query: 126 VVFTHEMVLKVLKNLESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWG 185
+ T ++V +VL++ +S E+ RFFNW S + ++ Y +L+ + Q W
Sbjct: 29 ISVTSDLVYRVLRSCPNSGTESLRFFNWARSHXSYQPTTLEYEELLKTLARTKQFQPMWK 88
Query: 186 LVDVMKKKGYGVASHVRNKMTEKFEKEGL 214
+ M+ V S + E+F K GL
Sbjct: 89 IAHQMQTLSPTVVSSI----IEEFGKHGL 113
>gi|115489794|ref|NP_001067384.1| Os12g0638900 [Oryza sativa Japonica Group]
gi|77556813|gb|ABA99609.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
gi|113649891|dbj|BAF30403.1| Os12g0638900 [Oryza sativa Japonica Group]
gi|125580213|gb|EAZ21359.1| hypothetical protein OsJ_37016 [Oryza sativa Japonica Group]
Length = 859
Score = 72.4 bits (176), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 94/400 (23%), Positives = 165/400 (41%), Gaps = 41/400 (10%)
Query: 206 TEKFEKEGLESDLEKLKGIFATGSIDNSIEKVASRICKVVRSDIWGDDVERQLRDLNVTF 265
T K G +S+L LK + + ++++++ WG E L +L+
Sbjct: 283 TIKSHGGGPQSNLRSLKSLRSVEQYYHTLQQMK-----------WGPMTEHVLDNLHCKI 331
Query: 266 ----SNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFW 321
+N ++K + D AL FF+W + KHD SY M +LG+
Sbjct: 332 DAFQANQVLKLLHDH-----TIALGFFQWLKRQPGFKHDGHSYTTMIGILGQARQFGTMR 386
Query: 322 KVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPS-VNCCTFL-LR 379
K+LDEM S + + T +++ + N ++EAV ++E +P V CT + +
Sbjct: 387 KLLDEMNSVHCKPTVVTYNRIIHAYGRANYLREAVKVFEEMQKAGYEPDRVTYCTLIDIH 446
Query: 380 KIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGF 439
+ M L++++ V AM+N + K G + K+ M E G
Sbjct: 447 AKGGYLEFAMDLYTRMQEVGLSPDTFTYSAMVNCLGKG----GHLAAAYKLFCEMVENG- 501
Query: 440 IASSNMKS---KIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIK---GHCVAGD 493
+ N+ + IA + + ++ + D M+ +G DK+ S++ GHC G
Sbjct: 502 -CTPNLVTYNIMIALQAKARNYENVVKLYKD-MQVAGFRP-DKITYSIVMEVLGHC--GH 556
Query: 494 LDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTY 553
LD+A F +M Y LLV+ + A + H +++ L+P T
Sbjct: 557 LDEAEAVFIEMRHDWAPDEPVYG--LLVDLWGKAGNVDKALGWYHAMLQD-GLQPNVPTC 613
Query: 554 EELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPFIKYVS 593
L+ L F+DA S+L M G P + + +S
Sbjct: 614 NSLLSAFLKINRFQDAYSVLQNMLAQGLVPSLQTYTLLLS 653
>gi|125587025|gb|EAZ27689.1| hypothetical protein OsJ_11637 [Oryza sativa Japonica Group]
Length = 650
Score = 72.4 bits (176), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 80/360 (22%), Positives = 142/360 (39%), Gaps = 57/360 (15%)
Query: 300 DESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLY 359
D +YN + + L + ++ +L++M +G ++ T ++ N ++EA+DL
Sbjct: 228 DVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLA 287
Query: 360 EFAMACKNKPSVNCCTFLLRKI--VVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKA 417
P V L+ + V L +RLF ++ + +G + N+++
Sbjct: 288 RQVTVKGVSPDVYTFNILINALCKVGDPHLALRLFEEM----KNSGCTPDEVTYNTLIDN 343
Query: 418 LISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVG 477
L S+G++G+ +LK ME G S+ + I L + +EA E D M+ G
Sbjct: 344 LCSLGKLGKALDLLKDMESTGCPRSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRN 403
Query: 478 DKMWVSLIKG-----------------------------------HCVAGDLDKAADCFQ 502
+ +LI G +C GD+ KAAD +
Sbjct: 404 AITFNTLIDGLCKDKKIDDAFELINQMISEGLQPNNITYNSILTHYCKQGDIKKAADILE 463
Query: 503 KMVEKEGTSHAGYAIDL-----LVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELI 557
M + G+ +D+ L+N C R A K + +R ++P Y ++
Sbjct: 464 TM------TANGFEVDVVTYGTLINGLCKAGRTQVALKVLRG-MRIKGMRPTPKAYNPVL 516
Query: 558 KNLLVQRGFKDALSLLCLMKDHGFPP----FVDPFIKYVSKSGTSDDAIAFLKGMTSKRF 613
++L + +DALSL M + G PP + F G +A F+ M K F
Sbjct: 517 QSLFRRNNIRDALSLFREMAEVGEPPDALTYKIVFRGLCRGGGPIKEAFDFMLEMVDKGF 576
>gi|346703131|emb|CBX25230.1| hypothetical_protein [Oryza brachyantha]
Length = 746
Score = 72.4 bits (176), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 81/360 (22%), Positives = 143/360 (39%), Gaps = 57/360 (15%)
Query: 300 DESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLY 359
D +YN + + L + ++ +L++M +G ++ T ++ N ++EA+DL
Sbjct: 324 DVFTYNIVVNCLCKNGQLEEAKGILNQMVERGCLPDITTFNTLIVALCSGNRLEEALDLA 383
Query: 360 EFAMACKNKPSVNCCTFLLRKI--VVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKA 417
P V L+ + V QL +RLF ++ + +G + N+++
Sbjct: 384 RQVTLKGLSPDVYTFNILINALCKVGDPQLALRLFEEM----KSSGCTPDEVTYNTLIDN 439
Query: 418 LISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVG 477
L S+G++G+ +LK ME G S+ + I L + +EA E D M+ G
Sbjct: 440 LCSLGKLGKALDLLKEMESAGCPRSTVTYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRN 499
Query: 478 DKMWVSLIKG-----------------------------------HCVAGDLDKAADCFQ 502
+ +LI G +C GD+ KAAD Q
Sbjct: 500 AITFNTLIDGLCKDKRIDDANQLISQMISEGLQPNNITYNSILTHYCKQGDIKKAADILQ 559
Query: 503 KMVEKEGTSHAGYAIDL-----LVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELI 557
M + G+ +D+ L+N C R A K + +R ++ Y +I
Sbjct: 560 TM------TANGFEVDVVTYGTLINGLCKAGRTQVALKLLRG-MRIKGMRATPKAYNPVI 612
Query: 558 KNLLVQRGFKDALSLLCLMKDHGFPP----FVDPFIKYVSKSGTSDDAIAFLKGMTSKRF 613
++L + +DA++L M + G PP + F G+ +A FL M K F
Sbjct: 613 QSLFRRNNTRDAMNLFREMTEVGEPPDAFTYKIVFRGLCRGGGSIREAFDFLLEMVDKGF 672
Score = 49.7 bits (117), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 108/532 (20%), Positives = 194/532 (36%), Gaps = 57/532 (10%)
Query: 130 HEMVLKVLKNLESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWG-LVD 188
E +L L+ + PD A R N L +E + Y ++R +G + LV
Sbjct: 44 QEELLTALRE-QPDPDAALRMLNAALAREDFAPGPEVYEEIIRKLGAAAGAADLMKVLVT 102
Query: 189 VMKKKGYGVASHVRNKMTEKFEKEGLESD--------LEKLKGIFATGSIDNSIEKVASR 240
M+++G+ V V + E + ++ L D L+ L GI A + N + V
Sbjct: 103 EMRREGHQVRVGVVHSFLESYARQQLFVDAVDLVLNQLDPLFGIQADTVVYNHLLNVLVE 162
Query: 241 ICKV-VRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKH 299
K+ + ++ + ER ++ VTF N L+K + + + A++ SG V
Sbjct: 163 GSKMKLLETVYSEMGERGIKPDVVTF-NTLMKALCR--AHQVRTAVLMLEEMSSSG-VAP 218
Query: 300 DESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLY 359
DE+++ + E I +V M G T ++ + + V++A+
Sbjct: 219 DETTFTTLMQGFVEEGSIKAALRVKARMLEMGCSPTKVTVNVLINGYCKLGRVEDALGYI 278
Query: 360 EFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALI 419
+ +A +P + + + + L KV+ V + G+ N V+ L
Sbjct: 279 QQEIANGFEPDQITYNTFVNGLCQNGHVGHAL--KVMDVMVQEGHDPDVFTYNIVVNCLC 336
Query: 420 SVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDK 479
G++ E IL M E G + + + L S + +EA + + G
Sbjct: 337 KNGQLEEAKGILNQMVERGCLPDITTFNTLIVALCSGNRLEEALDLARQVTLKGLSPDVY 396
Query: 480 MWVSLIKGHCVAGD-----------------------------------LDKAADCFQKM 504
+ LI C GD L KA D ++M
Sbjct: 397 TFNILINALCKVGDPQLALRLFEEMKSSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKEM 456
Query: 505 VEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQR 564
E G + + +++ C K R I+ + V + + + T+ LI L +
Sbjct: 457 -ESAGCPRSTVTYNTIIDGLCKKMR-IEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDK 514
Query: 565 GFKDALSLLCLMKDHGFPP---FVDPFIKYVSKSGTSDDAIAFLKGMTSKRF 613
DA L+ M G P + + + K G A L+ MT+ F
Sbjct: 515 RIDDANQLISQMISEGLQPNNITYNSILTHYCKQGDIKKAADILQTMTANGF 566
>gi|226509960|ref|NP_001150456.1| LOC100284086 [Zea mays]
gi|195639404|gb|ACG39170.1| ATP binding protein [Zea mays]
Length = 634
Score = 72.4 bits (176), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 85/368 (23%), Positives = 145/368 (39%), Gaps = 17/368 (4%)
Query: 226 ATGSIDNSIEKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKAL 285
A S +++V + I VV S ++E L L+ +V V+ + + +
Sbjct: 154 AAASNPEGVDRVCAAIADVVASGA-DANLEAALSALSPPLCEAVVLAVLHRFKHAHRPSY 212
Query: 286 IFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGR 345
FFRWA SG H +Y M +LG+ + ++ EM G + M+ +
Sbjct: 213 RFFRWATVSGGFTHTTITYCKMLHILGKTRQFESMVAMIQEMGKAG-ALSMDAFKVAIKS 271
Query: 346 FSERNMVKEAVDLYEFAMACKNK-----PSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFR 400
F+ +K AV ++E KN S NC L K + ++ ++F K+ +
Sbjct: 272 FAAAGEIKNAVGVFELMR--KNGFDDGVESFNCLLVALAKEGLGREAR-QVFDKMHGQYS 328
Query: 401 ENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKD 460
+ T ML A + + E ++ M E G + + + L ++
Sbjct: 329 PDLRSYTALML-----AWCNARNLVEAGRVWNEMLEKGMDPDVVVHNTMIEGLLRGQRRP 383
Query: 461 EANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLL 520
EA + + M+A G + LI+ HC G +D A +CF++M E + LL
Sbjct: 384 EAVKMFELMKAKGPPPNVWTYTMLIRDHCKQGKMDMAMECFEEMQEAKCQPDVATYTCLL 443
Query: 521 VNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHG 580
V +K +D V + + P TY LIK L + DA + M G
Sbjct: 444 VGYGNAKQ--MDRVTAVLEEMTQKGCPPDARTYNALIKLLTNRNMPDDAARIYKKMIKKG 501
Query: 581 FPPFVDPF 588
P + +
Sbjct: 502 LEPTIHTY 509
Score = 47.4 bits (111), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 89/449 (19%), Positives = 166/449 (36%), Gaps = 55/449 (12%)
Query: 102 TVVSDIFYKFSDVNDISKQLELSGVVFTHEMVLKVLKNLESSPDEARRFFNWVLEKESER 161
++D+ +D N + L +VL VL + + + RFF W
Sbjct: 167 AAIADVVASGADAN-LEAALSALSPPLCEAVVLAVLHRFKHAHRPSYRFFRWATVSGGFT 225
Query: 162 LSSKTYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRNKMTEKFEKEGLESDLEK- 220
++ TY ML I+G + ++ M K G L D K
Sbjct: 226 HTTITYCKMLHILGKTRQFESMVAMIQEMGKAG------------------ALSMDAFKV 267
Query: 221 -LKGIFATGSIDNSIEKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGD 279
+K A G I N++ + +++R + + D VE +F+ LV + LG
Sbjct: 268 AIKSFAAAGEIKNAVG-----VFELMRKNGFDDGVE--------SFNCLLVALAKEGLGR 314
Query: 280 EPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEM--- 336
E ++ + + G D SY A+ + +V +EM KG + ++
Sbjct: 315 EARQV-----FDKMHGQYSPDLRSYTALMLAWCNARNLVEAGRVWNEMLEKGMDPDVVVH 369
Query: 337 ETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVV 396
T ++ L R R EAV ++E A P+V T L+R ++DM +
Sbjct: 370 NTMIEGLLRGQRR---PEAVKMFELMKAKGPPPNVWTYTMLIRDHCKQGKMDMAM----- 421
Query: 397 RVFRENGNVLTDAMLNSVLKALISVG---RMGECNKILKAMEEGGFIASSNMKSKIAFRL 453
F E + + L+ G +M +L+ M + G + + + L
Sbjct: 422 ECFEEMQEAKCQPDVATYTCLLVGYGNAKQMDRVTAVLEEMTQKGCPPDARTYNALIKLL 481
Query: 454 SSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADC-FQKMVEKEGTSH 512
++ D+A M G + + ++K + V GD + A C + + + G
Sbjct: 482 TNRNMPDDAARIYKKMIKKGLEPTIHTYNMMMKSYFV-GDSNYAMGCAVWEEMHQRGICP 540
Query: 513 AGYAIDLLVNTYCSKNRAIDACKFVHNCV 541
+ + +N + R +A K++ +
Sbjct: 541 DVNSYTVFINRHIRHGRPEEAYKYIEEMI 569
>gi|413945076|gb|AFW77725.1| ATP binding protein isoform 1 [Zea mays]
gi|413945077|gb|AFW77726.1| ATP binding protein isoform 2 [Zea mays]
gi|413945078|gb|AFW77727.1| ATP binding protein isoform 3 [Zea mays]
Length = 634
Score = 72.0 bits (175), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 85/368 (23%), Positives = 145/368 (39%), Gaps = 17/368 (4%)
Query: 226 ATGSIDNSIEKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKAL 285
A S +++V + I VV S ++E L L+ +V V+ + + +
Sbjct: 154 AAASNPEGVDRVCAAIADVVASGA-DANLEAALSALSPPLCEAVVLAVLHRFKHAHRPSY 212
Query: 286 IFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGR 345
FFRWA SG H +Y M +LG+ + ++ EM G + M+ +
Sbjct: 213 RFFRWATVSGGFTHTTITYCKMLHILGKTRQFESMVAMIQEMGKAG-ALSMDAFKVAIKS 271
Query: 346 FSERNMVKEAVDLYEFAMACKNK-----PSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFR 400
F+ +K AV ++E KN S NC L K + ++ ++F K+ +
Sbjct: 272 FAAAGEIKNAVGVFELMR--KNGFDDGVESFNCLLVALAKEGLGREAR-QVFDKMHGQYS 328
Query: 401 ENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKD 460
+ T ML A + + E ++ M E G + + + L ++
Sbjct: 329 PDLRSYTALML-----AWCNARNLVEAGRVWNEMLEKGMDPDVVVHNTMIEGLLRGQRRP 383
Query: 461 EANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLL 520
EA + + M+A G + LI+ HC G +D A +CF++M E + LL
Sbjct: 384 EAVKMFELMKAKGPPPNVWTYTMLIRDHCKQGKMDMAMECFEEMQEAKCQPDVATYTCLL 443
Query: 521 VNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHG 580
V +K +D V + + P TY LIK L + DA + M G
Sbjct: 444 VGYGNAKQ--MDRVTAVLEEMTQKGCPPDARTYNALIKLLTNRNMPDDAARIYKKMIKKG 501
Query: 581 FPPFVDPF 588
P + +
Sbjct: 502 LEPTIHTY 509
Score = 47.0 bits (110), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 89/449 (19%), Positives = 166/449 (36%), Gaps = 55/449 (12%)
Query: 102 TVVSDIFYKFSDVNDISKQLELSGVVFTHEMVLKVLKNLESSPDEARRFFNWVLEKESER 161
++D+ +D N + L +VL VL + + + RFF W
Sbjct: 167 AAIADVVASGADAN-LEAALSALSPPLCEAVVLAVLHRFKHAHRPSYRFFRWATVSGGFT 225
Query: 162 LSSKTYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRNKMTEKFEKEGLESDLEK- 220
++ TY ML I+G + ++ M K G L D K
Sbjct: 226 HTTITYCKMLHILGKTRQFESMVAMIQEMGKAG------------------ALSMDAFKV 267
Query: 221 -LKGIFATGSIDNSIEKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGD 279
+K A G I N++ + +++R + + D VE +F+ LV + LG
Sbjct: 268 AIKSFAAAGEIKNAVG-----VFELMRKNGFDDGVE--------SFNCLLVALAKEGLGR 314
Query: 280 EPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEM--- 336
E ++ + + G D SY A+ + +V +EM KG + ++
Sbjct: 315 EARQV-----FDKMHGQYSPDLRSYTALMLAWCNARNLVEAGRVWNEMLEKGMDPDVVVH 369
Query: 337 ETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVV 396
T ++ L R R EAV ++E A P+V T L+R ++DM +
Sbjct: 370 NTMIEGLLRGQRR---PEAVKMFELMKAKGPPPNVWTYTMLIRDHCKQGKMDMAM----- 421
Query: 397 RVFRENGNVLTDAMLNSVLKALISVG---RMGECNKILKAMEEGGFIASSNMKSKIAFRL 453
F E + + L+ G +M +L+ M + G + + + L
Sbjct: 422 ECFEEMQEAKCQPDVATYTCLLVGYGNAKQMDRVTAVLEEMTQKGCPPDARTYNALIKLL 481
Query: 454 SSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADC-FQKMVEKEGTSH 512
++ D+A M G + + ++K + V GD + A C + + + G
Sbjct: 482 TNRNMPDDAARIYKKMIKKGLEPTIHTYNMMMKSYFV-GDSNYAMGCAVWEEMHQRGICP 540
Query: 513 AGYAIDLLVNTYCSKNRAIDACKFVHNCV 541
+ + +N + R +A K++ +
Sbjct: 541 DVNSYTVFINGHIRHGRPEEAYKYIEEMI 569
>gi|326517954|dbj|BAK07229.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 549
Score = 72.0 bits (175), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 88/395 (22%), Positives = 154/395 (38%), Gaps = 55/395 (13%)
Query: 263 VTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWK 322
V S+ +V ++ + G + A FF WA +H SYN+M +LG+ D W
Sbjct: 122 VRVSDRMVDKILRRFGSDWVAAFGFFMWAGAQEGYRHSADSYNSMVDILGKFKQFDLMWG 181
Query: 323 VLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLY----EFAMACKNKPSVNCCTFLL 378
++ +M G + + T KV+ R + + +A+D + +F + K+ ++N
Sbjct: 182 LISQMDEIGGLVSLATMTKVMRRLAGASRWTDAIDAFNKMDQFGVV-KDTTAMN------ 234
Query: 379 RKIVVSKQLDMRLFSKVVRVFRE-NGNVLTD-AMLNSVLKALISVGRMGECNKILKAMEE 436
+++ R + F+E G+V D + N+++ M E ++K MEE
Sbjct: 235 --VLLDTLCKERSVKRARGAFQELRGSVPPDESSFNTLVHGWCKARMMNEARDMMKEMEE 292
Query: 437 GGFIAS------------------------SNMKSK-----------IAFRLSSAGKKDE 461
GF S + M+SK + L AG+ E
Sbjct: 293 HGFKPSVITYTSLIEAYCMEKDFQTVYAILNEMRSKGCPPNVITYTIVMHALGKAGRTQE 352
Query: 462 ANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLV 521
A + D + G + SLI AG L+ A KM G + L+
Sbjct: 353 ALDIFDKVRGDGCAPDASFYNSLIYILGRAGRLEDANSVVDKM-RMTGVRPTVATFNTLI 411
Query: 522 NTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGF 581
+ C ++A +A K + + E KP TY L+K ++ K L+C M
Sbjct: 412 SAACDHSQAENALKMLVK-MEEQSCKPDIKTYTPLLKLCCKRQWIKVLRFLICHMFRKDI 470
Query: 582 PPFVDPF---IKYVSKSGTSDDAIAFLKGMTSKRF 613
P + + ++ ++G + FL+ M K F
Sbjct: 471 TPDFSTYTLLVTWLCRNGKPAQSCLFLEEMVLKGF 505
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 74/346 (21%), Positives = 141/346 (40%), Gaps = 13/346 (3%)
Query: 98 ESDFTVVSDIFYK-FSDVNDISKQLELSGVVFTHEMVLKVLKNLESSPDEARRFFNWVLE 156
E+DF S I F+ I ++ V + MV K+L+ S A FF W
Sbjct: 93 EADFDEASRILTSCFASPEAIVIAMDCCPVRVSDRMVDKILRRFGSDWVAAFGFFMWAGA 152
Query: 157 KESERLSSKTYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRNKMTEKFEKEGLES 216
+E R S+ +YN M+ I+G WGL+ M + G V+ K+ + +
Sbjct: 153 QEGYRHSADSYNSMVDILGKFKQFDLMWGLISQMDEIGGLVSLATMTKVMRRLAGASRWT 212
Query: 217 D-LEKLKGIFATGSIDNS--IEKVASRICK---VVRSDIWGDDVERQLRDLNVTFSNDLV 270
D ++ + G + ++ + + +CK V R+ ++ + +F+ +
Sbjct: 213 DAIDAFNKMDQFGVVKDTTAMNVLLDTLCKERSVKRARGAFQELRGSVPPDESSFNTLVH 272
Query: 271 KFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSK 330
+ ++ +E + + + EE GF K +Y ++ E + +L+EMRSK
Sbjct: 273 GWCKARMMNEARDMM---KEMEEHGF-KPSVITYTSLIEAYCMEKDFQTVYAILNEMRSK 328
Query: 331 GYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMR 390
G + T V+ + +EA+D+++ P + L+ ++ + +
Sbjct: 329 GCPPNVITYTIVMHALGKAGRTQEALDIFDKVRGDGCAPDASFYNSLI--YILGRAGRLE 386
Query: 391 LFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEE 436
+ VV R G T A N+++ A + K+L MEE
Sbjct: 387 DANSVVDKMRMTGVRPTVATFNTLISAACDHSQAENALKMLVKMEE 432
>gi|186495472|ref|NP_177628.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|133778904|gb|ABO38792.1| At1g74900 [Arabidopsis thaliana]
gi|332197524|gb|AEE35645.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 453
Score = 72.0 bits (175), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 90/381 (23%), Positives = 161/381 (42%), Gaps = 28/381 (7%)
Query: 265 FSNDLVKFVVDKLGDEPKKALIFFRWAEESG--FVKHDESSYNAMASVLGREDCIDRFWK 322
++ +LV V+ +L + KAL FF + + +V HD SS++ + R W
Sbjct: 54 WTPNLVNSVLKRLWNHGPKALQFFHFLDNHHREYV-HDASSFDLAIDIAARLHLHPTVWS 112
Query: 323 VLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLY--EFAMAC-KNKPSVNCCTFLLR 379
++ MRS +T V R++ +AV L+ C ++ S N +L
Sbjct: 113 LIHRMRSLRIGPSPKTFAIVAERYASAGKPDKAVKLFLNMHEHGCFQDLASFNT---ILD 169
Query: 380 KIVVSKQLDMRLFSKVVRVFRE-NGNVLTDAM-LNSVLKALISVGRMGECNKILKAMEEG 437
+ SK+++ K +FR G D + N +L + R + ++LK M E
Sbjct: 170 VLCKSKRVE-----KAYELFRALRGRFSVDTVTYNVILNGWCLIKRTPKALEVLKEMVER 224
Query: 438 GF---IASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDL 494
G + + N K FR AG+ A EF M+ ++ + +++ G VAG++
Sbjct: 225 GINPNLTTYNTMLKGFFR---AGQIRHAWEFFLEMKKRDCEIDVVTYTTVVHGFGVAGEI 281
Query: 495 DKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYE 554
+A + F +M+ +EG + + ++ C K+ +A VR +P TTY
Sbjct: 282 KRARNVFDEMI-REGVLPSVATYNAMIQVLCKKDNVENAVVMFEEMVRR-GYEPNVTTYN 339
Query: 555 ELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPF---IKYVSKSGTSDDAIAFLKGMTSK 611
LI+ L F L+ M++ G P + I+Y S+ + A+ + M S
Sbjct: 340 VLIRGLFHAGEFSRGEELMQRMENEGCEPNFQTYNMMIRYYSECSEVEKALGLFEKMGSG 399
Query: 612 R-FPSMSVVLCLFAAFFQARR 631
P++ L + F +R
Sbjct: 400 DCLPNLDTYNILISGMFVRKR 420
>gi|15221411|ref|NP_177623.1| plastid transcriptionally active 2 [Arabidopsis thaliana]
gi|75194055|sp|Q9S7Q2.1|PP124_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g74850, chloroplastic; AltName: Full=Protein PLASTID
TRANSCRIPTIONALLY ACTIVE 2; Flags: Precursor
gi|5882738|gb|AAD55291.1|AC008263_22 Contains 3 PF|01535 DUF17 domains [Arabidopsis thaliana]
gi|12323908|gb|AAG51934.1|AC013258_28 hypothetical protein; 81052-84129 [Arabidopsis thaliana]
gi|332197518|gb|AEE35639.1| plastid transcriptionally active 2 [Arabidopsis thaliana]
Length = 862
Score = 72.0 bits (175), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 74/358 (20%), Positives = 144/358 (40%), Gaps = 7/358 (1%)
Query: 282 KKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVK 341
+++L F++ + + K +E Y M S+LGRE +D+ +V DEM S+G + +
Sbjct: 122 QRSLRLFKYMQRQIWCKPNEHIYTIMISLLGREGLLDKCLEVFDEMPSQGVSRSVFSYTA 181
Query: 342 VLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRE 401
++ + + +++L + K PS+ ++ LD + R
Sbjct: 182 LINAYGRNGRYETSLELLDRMKNEKISPSILTYNTVINA-CARGGLDWEGLLGLFAEMRH 240
Query: 402 NGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDE 461
G N++L A G E + + M +GG + S + + ++
Sbjct: 241 EGIQPDIVTYNTLLSACAIRGLGDEAEMVFRTMNDGGIVPDLTTYSHLVETFGKLRRLEK 300
Query: 462 ANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLV 521
+ + M + GS + L++ + +G + +A F +M + G + +L+
Sbjct: 301 VCDLLGEMASGGSLPDITSYNVLLEAYAKSGSIKEAMGVFHQM-QAAGCTPNANTYSVLL 359
Query: 522 NTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGF 581
N + R D + ++ + P TY LI+ FK+ ++L M +
Sbjct: 360 NLFGQSGRYDDVRQLFLE-MKSSNTDPDAATYNILIEVFGEGGYFKEVVTLFHDMVEENI 418
Query: 582 PPFVDPF---IKYVSKSGTSDDAIAFLKGMTSKRF-PSMSVVLCLFAAFFQARRHSEA 635
P ++ + I K G +DA L+ MT+ PS + AF QA + EA
Sbjct: 419 EPDMETYEGIIFACGKGGLHEDARKILQYMTANDIVPSSKAYTGVIEAFGQAALYEEA 476
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 78/370 (21%), Positives = 147/370 (39%), Gaps = 22/370 (5%)
Query: 149 RFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRNKMTEK 208
R F ++ + + + Y +M+ ++G GL+ + + D M +G + +
Sbjct: 126 RLFKYMQRQIWCKPNEHIYTIMISLLGREGLLDKCLEVFDEMPSQGVSRSVFSYTALINA 185
Query: 209 FEKEG-LESDLEKLKGIFATGSIDNSIEKVASRICKVVRSDI-W----GDDVERQLRDLN 262
+ + G E+ LE L + I SI + I R + W G E + +
Sbjct: 186 YGRNGRYETSLELLDRM-KNEKISPSILTYNTVINACARGGLDWEGLLGLFAEMRHEGIQ 244
Query: 263 ---VTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDR 319
VT++ L + LGDE A + FR + G V D ++Y+ + G+ +++
Sbjct: 245 PDIVTYNTLLSACAIRGLGDE---AEMVFRTMNDGGIVP-DLTTYSHLVETFGKLRRLEK 300
Query: 320 FWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLR 379
+L EM S G ++ + +L +++ +KEA+ ++ A P+ N + LL
Sbjct: 301 VCDLLGEMASGGSLPDITSYNVLLEAYAKSGSIKEAMGVFHQMQAAGCTPNANTYSVLLN 360
Query: 380 KIVVSKQLDMRLFSKVVRVFRENGNVLTD---AMLNSVLKALISVGRMGECNKILKAMEE 436
S + D V ++F E + TD A N +++ G E + M E
Sbjct: 361 LFGQSGRYD-----DVRQLFLEMKSSNTDPDAATYNILIEVFGEGGYFKEVVTLFHDMVE 415
Query: 437 GGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDK 496
I F G ++A + + +M A+ K + +I+ A ++
Sbjct: 416 ENIEPDMETYEGIIFACGKGGLHEDARKILQYMTANDIVPSSKAYTGVIEAFGQAALYEE 475
Query: 497 AADCFQKMVE 506
A F M E
Sbjct: 476 ALVAFNTMHE 485
>gi|255540825|ref|XP_002511477.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223550592|gb|EEF52079.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 754
Score = 72.0 bits (175), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 74/358 (20%), Positives = 144/358 (40%), Gaps = 7/358 (1%)
Query: 282 KKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVK 341
+++L F++ + + K +E Y + S+LGRE +++ ++ +EM + G + +
Sbjct: 123 QRSLRLFKYMQRQIWCKPNEHIYTIIISLLGREGLLEKSTEIFEEMPTHGVPRSVFSYTA 182
Query: 342 VLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRE 401
++ + + +++L E K PS+ ++ L+ + R
Sbjct: 183 LINSYGRHGQYEVSLELLERMKKEKVTPSILTYNTVINS-CARGGLNWEGLLSLFAEMRH 241
Query: 402 NGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDE 461
G N++L A + G E + + M EGG + + K ++
Sbjct: 242 EGIQPDIITYNTLLNACANRGLGDEAEMVFRTMNEGGMVPDITTYRNLVETFGKLNKLEK 301
Query: 462 ANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLV 521
+E + ME+SG+ + L++ + GD+ A F++M E +A +L+
Sbjct: 302 VSELLKEMESSGNLPDISSYNVLLEAYASKGDIRHAMGVFRQMQEARCVPNA-VTYSMLL 360
Query: 522 NTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGF 581
N Y R D + ++ + +P TY LI+ FK+ ++L M +
Sbjct: 361 NLYGGHGRYDDVRELFLE-MKVSNTEPDVGTYNVLIEVFGEGGYFKEVVTLFHDMVEENV 419
Query: 582 PPFVDPF---IKYVSKSGTSDDAIAFLKGMTSKRF-PSMSVVLCLFAAFFQARRHSEA 635
P + + I K G +DA L M K PS + A+ QA + EA
Sbjct: 420 EPNMGTYEGLIYACGKGGLHEDAKKILLHMDEKGIVPSTKAYTGVIEAYGQAASYEEA 477
Score = 39.3 bits (90), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 56/277 (20%), Positives = 113/277 (40%), Gaps = 37/277 (13%)
Query: 263 VTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWK 322
+T++ L LGDE A + FR E G V D ++Y + G+ + +++ +
Sbjct: 249 ITYNTLLNACANRGLGDE---AEMVFRTMNEGGMVP-DITTYRNLVETFGKLNKLEKVSE 304
Query: 323 VLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLL---- 378
+L EM S G ++ + +L ++ + ++ A+ ++ + P+ + LL
Sbjct: 305 LLKEMESSGNLPDISSYNVLLEAYASKGDIRHAMGVFRQMQEARCVPNAVTYSMLLNLYG 364
Query: 379 --------RKI-----VVSKQLDMRLFSKVVRVFRENG---NVLT----------DAMLN 412
R++ V + + D+ ++ ++ VF E G V+T + +
Sbjct: 365 GHGRYDDVRELFLEMKVSNTEPDVGTYNVLIEVFGEGGYFKEVVTLFHDMVEENVEPNMG 424
Query: 413 SVLKALISVGRMG---ECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHM 469
+ + + G+ G + KIL M+E G + S+ + + A +EA + M
Sbjct: 425 TYEGLIYACGKGGLHEDAKKILLHMDEKGIVPSTKAYTGVIEAYGQAASYEEALVMFNTM 484
Query: 470 EASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVE 506
GS + + SLI G ++ KM E
Sbjct: 485 NEMGSKPTVETYNSLINMFARGGLYKESEAIMWKMGE 521
>gi|75194072|sp|Q9S7R4.1|PP125_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g74900, mitochondrial; AltName: Full=Protein
ORGANELLE TRANSCRIPT PROCESSING DEFECT 43; Flags:
Precursor
gi|5882733|gb|AAD55286.1|AC008263_17 Contains a PF|01535 DUF17 domain [Arabidopsis thaliana]
gi|12323885|gb|AAG51911.1|AC013258_5 hypothetical protein; 69434-67986 [Arabidopsis thaliana]
Length = 482
Score = 72.0 bits (175), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 93/384 (24%), Positives = 163/384 (42%), Gaps = 29/384 (7%)
Query: 265 FSNDLVKFVVDKLGDEPKKALIFFRWAEESG--FVKHDESSYNAMASVLGREDCIDRFWK 322
++ +LV V+ +L + KAL FF + + +V HD SS++ + R W
Sbjct: 54 WTPNLVNSVLKRLWNHGPKALQFFHFLDNHHREYV-HDASSFDLAIDIAARLHLHPTVWS 112
Query: 323 VLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLY--EFAMAC-KNKPSVNCCTFLLR 379
++ MRS +T V R++ +AV L+ C ++ S N +L
Sbjct: 113 LIHRMRSLRIGPSPKTFAIVAERYASAGKPDKAVKLFLNMHEHGCFQDLASFNTILDVLC 172
Query: 380 KIVVSKQLDMRLFSKVVRVFRE-NGNVLTDAM-LNSVLKALISVGRMGECNKILKAMEEG 437
K SK+++ K +FR G D + N +L + R + ++LK M E
Sbjct: 173 K---SKRVE-----KAYELFRALRGRFSVDTVTYNVILNGWCLIKRTPKALEVLKEMVER 224
Query: 438 GF---IASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDL 494
G + + N K FR AG+ A EF M+ ++ + +++ G VAG++
Sbjct: 225 GINPNLTTYNTMLKGFFR---AGQIRHAWEFFLEMKKRDCEIDVVTYTTVVHGFGVAGEI 281
Query: 495 DKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYE 554
+A + F +M+ +EG + + ++ C K+ +A VR +P TTY
Sbjct: 282 KRARNVFDEMI-REGVLPSVATYNAMIQVLCKKDNVENAVVMFEEMVRR-GYEPNVTTYN 339
Query: 555 ELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPF---IKYVSKSGTSDDAIAFLKGMTSK 611
LI+ L F L+ M++ G P + I+Y S+ + A+ + M S
Sbjct: 340 VLIRGLFHAGEFSRGEELMQRMENEGCEPNFQTYNMMIRYYSECSEVEKALGLFEKMGSG 399
Query: 612 R-FPSMSVVLCLFAAFFQARRHSE 634
P++ L + F R+ SE
Sbjct: 400 DCLPNLDTYNILISGMF-VRKRSE 422
>gi|2827705|emb|CAA16678.1| predicted protein [Arabidopsis thaliana]
Length = 598
Score = 72.0 bits (175), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 81/363 (22%), Positives = 153/363 (42%), Gaps = 34/363 (9%)
Query: 254 VERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGR 313
+E L + V L++ V+++ GD FF WA + H Y +M +L +
Sbjct: 93 LELALNESGVELRPGLIERVLNRCGDAGNLGYRFFVWAAKQPRYCHSIEVYKSMVKILSK 152
Query: 314 EDCIDRFWKVLDEMRSKGYEM-EMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVN 372
W +++EMR + ++ E E V ++ RF+ +MVK+A+++ + +P
Sbjct: 153 MRQFGAVWGLIEEMRKENPQLIEPELFVVLVQRFASADMVKKAIEVLDEMPKFGFEP--- 209
Query: 373 CCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILK 432
D +F ++ ++G+V A L ++ + VG+M E +L
Sbjct: 210 ---------------DEYVFGCLLDALCKHGSVKDAAKLFEDMR--MRVGKMMEAKYVLV 252
Query: 433 AMEEGGF----IASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGH 488
M E GF + +N+ S A +AGK +A + + M G + + LI+
Sbjct: 253 QMNEAGFEPDIVDYTNLLSGYA----NAGKMADAYDLLRDMRRRGFEPNANCYTVLIQAL 308
Query: 489 CVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKP 548
C +++A F +M E + LV+ +C + ID C V + + + L P
Sbjct: 309 CKVDRMEEAMKVFVEMERYECEADV-VTYTALVSGFCKWGK-IDKCYIVLDDMIKKGLMP 366
Query: 549 WHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPF---IKYVSKSGTSDDAIAFL 605
TY ++ + F++ L L+ M+ + P + + I+ K G +A+
Sbjct: 367 SELTYMHIMVAHEKKESFEECLELMEKMRQIEYHPDIGIYNVVIRLACKLGEVKEAVRLW 426
Query: 606 KGM 608
M
Sbjct: 427 NEM 429
>gi|51971677|dbj|BAD44503.1| hypothetical protein [Arabidopsis thaliana]
Length = 447
Score = 72.0 bits (175), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 90/381 (23%), Positives = 161/381 (42%), Gaps = 28/381 (7%)
Query: 265 FSNDLVKFVVDKLGDEPKKALIFFRWAEESG--FVKHDESSYNAMASVLGREDCIDRFWK 322
++ +LV V+ +L + KAL FF + + +V HD SS++ + R W
Sbjct: 48 WTPNLVNSVLKRLWNHGPKALQFFHFLDNHHREYV-HDASSFDLAIDIAARLHLHPTVWS 106
Query: 323 VLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLY--EFAMAC-KNKPSVNCCTFLLR 379
++ MRS +T V R++ +AV L+ C ++ S N +L
Sbjct: 107 LIHRMRSLRIGPSPKTFAIVAERYASAGKPDKAVKLFLNMHEHGCFQDLASFNT---ILD 163
Query: 380 KIVVSKQLDMRLFSKVVRVFRE-NGNVLTDAM-LNSVLKALISVGRMGECNKILKAMEEG 437
+ SK+++ K +FR G D + N +L + R + ++LK M E
Sbjct: 164 VLCKSKRVE-----KAYELFRALRGRFSVDTVTYNVILNGWCLIKRTPKTLEVLKEMVER 218
Query: 438 GF---IASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDL 494
G + + N K FR AG+ A EF M+ ++ + +++ G VAG++
Sbjct: 219 GINPNLTTYNTMLKGFFR---AGQIRHAWEFFLEMKKRDCEIDVVTYTTVVHGFGVAGEI 275
Query: 495 DKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYE 554
+A + F +M+ +EG + + ++ C K+ +A VR +P TTY
Sbjct: 276 KRARNVFDEMI-REGVLPSVATYNAMIQVLCKKDNVENAVVMFEEMVRR-GYEPNVTTYN 333
Query: 555 ELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPF---IKYVSKSGTSDDAIAFLKGMTSK 611
LI+ L F L+ M++ G P + I+Y S+ + A+ + M S
Sbjct: 334 VLIRGLFHAGEFSRGEELMQRMENEGCEPNFQTYNMMIRYYSECSEVEKALGLFEKMGSG 393
Query: 612 R-FPSMSVVLCLFAAFFQARR 631
P++ L + F +R
Sbjct: 394 DCLPNLDTYNILISGMFVRKR 414
>gi|302784232|ref|XP_002973888.1| hypothetical protein SELMODRAFT_100264 [Selaginella moellendorffii]
gi|300158220|gb|EFJ24843.1| hypothetical protein SELMODRAFT_100264 [Selaginella moellendorffii]
Length = 399
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 56/234 (23%), Positives = 100/234 (42%), Gaps = 7/234 (2%)
Query: 412 NSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEA 471
N+++ L GR+ E ++L ME GF A+ + + LSSAG+ EA M M
Sbjct: 93 NTLIAGLCKAGRLDEAQQVLDEMERSGFAANLVTYNTLINGLSSAGRSGEAVLVMQGMTT 152
Query: 472 SGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAI 531
+ + + ++I G C +G++D+A ++M ++ G S + +L+N C +
Sbjct: 153 TPDT---QTYNAIIHGFCKSGEIDRAYGFLEEMKQRAGCSPDTFTYSILINGLCKSSNLR 209
Query: 532 DACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPF--- 588
A + + + D + L+ + A LL M +HG P V +
Sbjct: 210 KADELLQEMIGRKDCCASVVAFNTLVDGYCKAQDLDRARELLSSMLEHGCAPDVVTYSTI 269
Query: 589 IKYVSKSGTSDDAIAFLKGMTSKRF-PSMSVVLCLFAAFFQARRHSEAQDLLSK 641
I + + G D A L+ M S+ P + L +A + EA L+ +
Sbjct: 270 IDGLCRCGDVDKGFALLEKMVSRGCKPDVVTYTVLVTGLCKAGKMVEACRLVKR 323
Score = 53.5 bits (127), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 65/133 (48%), Gaps = 4/133 (3%)
Query: 481 WVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNC 540
+ L++ HC+AG+L A D ++M ++ G + + V+ C + +A + V N
Sbjct: 21 YFVLVRAHCLAGELQAAMDLLREMEQQPGMAPTPSMYNFFVHALCKSGKVPEAMEVVKN- 79
Query: 541 VREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFV---DPFIKYVSKSGT 597
+++ KP T+ LI L +A +L M+ GF + + I +S +G
Sbjct: 80 MKDGACKPDVVTFNTLIAGLCKAGRLDEAQQVLDEMERSGFAANLVTYNTLINGLSSAGR 139
Query: 598 SDDAIAFLKGMTS 610
S +A+ ++GMT+
Sbjct: 140 SGEAVLVMQGMTT 152
Score = 45.4 bits (106), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 62/290 (21%), Positives = 111/290 (38%), Gaps = 9/290 (3%)
Query: 293 ESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMV 352
+ G K D ++N + + L + +D +VLDEM G+ + T ++ S
Sbjct: 81 KDGACKPDVVTFNTLIAGLCKAGRLDEAQQVLDEMERSGFAANLVTYNTLINGLSSAGRS 140
Query: 353 KEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLN 412
EAV + + + + N ++ S ++D R + + ++ D
Sbjct: 141 GEAVLVMQGMTTTPDTQTYNA---IIHGFCKSGEID-RAYG-FLEEMKQRAGCSPDTFTY 195
Query: 413 SVL-KALISVGRMGECNKILKAM-EEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHME 470
S+L L + + +++L+ M AS + + A D A E + M
Sbjct: 196 SILINGLCKSSNLRKADELLQEMIGRKDCCASVVAFNTLVDGYCKAQDLDRARELLSSML 255
Query: 471 ASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRA 530
G + ++I G C GD+DK +KMV + G +LV C +
Sbjct: 256 EHGCAPDVVTYSTIIDGLCRCGDVDKGFALLEKMVSR-GCKPDVVTYTVLVTGLCKAGKM 314
Query: 531 IDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHG 580
++AC+ V + E P TY + L A LL ++D G
Sbjct: 315 VEACRLVKR-MLEDGCTPNAVTYSLVFDGLCKIDKLDMANDLLTSIRDKG 363
>gi|224127136|ref|XP_002329409.1| predicted protein [Populus trichocarpa]
gi|222870459|gb|EEF07590.1| predicted protein [Populus trichocarpa]
Length = 599
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 89/387 (22%), Positives = 149/387 (38%), Gaps = 46/387 (11%)
Query: 263 VTFSNDLVKFVVD--KLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRF 320
+ S + V FV+ +L P AL FF WA + H+ Y + VL +D
Sbjct: 57 IKLSPNFVSFVLKSMELQKRPDLALKFFTWAGKQKKYTHNLQCYVSSIDVLAINGDLDNV 116
Query: 321 WKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRK 380
V + R G+ M + ++ F MV+E + ++ +PS+ FLL
Sbjct: 117 KSVFCKFRGMGFLMNVSAANSLIKSFGSLGMVEELLWVWRGMKENGVEPSLFTYNFLLNG 176
Query: 381 IVVSKQLDMRLFSKVVRVFRENGNVLTDAM-LNSVLKALISVGRMGE------------- 426
+V S ++ +V+ V ENG + D + N+++K VG+ +
Sbjct: 177 LVNSVFIESA--ERVLEVM-ENGKIGPDVVTYNTMIKGYCQVGKTQKAFEKFRDMELRNV 233
Query: 427 ----------------------CNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANE 464
C + M+E G + S + L GK E
Sbjct: 234 APDKITYMTLIQACYAEGDFDLCLSLYHEMDENGLEIPPHAYSLVIGGLCKEGKCVEGYA 293
Query: 465 FMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTY 524
+ M G V ++ +LI + G++ +A F++M +KEG ++VN
Sbjct: 294 VFEKMIQKGCKVNVAIYTALIDSNAKCGNMGEAMLLFERM-KKEGLEPDVVTYGVVVNCM 352
Query: 525 CSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPP- 583
C R +A +++ C R + Y LI L +A L M G PP
Sbjct: 353 CKSGRLDEAMEYLEFC-RVNGVAVNAMLYSSLIDGLGKAGRVHEAEKLFEEMVKKGCPPD 411
Query: 584 --FVDPFIKYVSKSGTSDDAIAFLKGM 608
+ I ++K G +D+A+AF K M
Sbjct: 412 SYCYNALIDALAKCGKTDEALAFFKRM 438
Score = 52.4 bits (124), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 94/471 (19%), Positives = 182/471 (38%), Gaps = 67/471 (14%)
Query: 133 VLKVLKNLESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLVDVMKK 192
VLK ++ L+ PD A +FF W +++ + + Y + ++ ++G + + +
Sbjct: 67 VLKSME-LQKRPDLALKFFTWAGKQKKYTHNLQCYVSSIDVLAINGDLDNVKSVFCKFRG 125
Query: 193 KGYGVASHVRNKMTEKFEKEGLESDL------EKLKGI---------FATGSIDNSIEKV 237
G+ + N + + F G+ +L K G+ G +++ +
Sbjct: 126 MGFLMNVSAANSLIKSFGSLGMVEELLWVWRGMKENGVEPSLFTYNFLLNGLVNSVFIES 185
Query: 238 ASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFV 297
A R+ +V+ + G DV VT+ N ++K ++G + +KA FR E V
Sbjct: 186 AERVLEVMENGKIGPDV--------VTY-NTMIKGYC-QVG-KTQKAFEKFRDMELRN-V 233
Query: 298 KHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVD 357
D+ +Y + E D + EM G E+ V+G + E
Sbjct: 234 APDKITYMTLIQACYAEGDFDLCLSLYHEMDENGLEIPPHAYSLVIGGLCKEGKCVEGYA 293
Query: 358 LYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKA 417
++E ++ K +V NV A+ +++ +
Sbjct: 294 VFE-----------------------------KMIQKGCKV-----NV---AIYTALIDS 316
Query: 418 LISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVG 477
G MGE + + M++ G + + +G+ DEA E+++ +G V
Sbjct: 317 NAKCGNMGEAMLLFERMKKEGLEPDVVTYGVVVNCMCKSGRLDEAMEYLEFCRVNGVAVN 376
Query: 478 DKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFV 537
++ SLI G AG + +A F++MV K+G Y + L++ + +A F
Sbjct: 377 AMLYSSLIDGLGKAGRVHEAEKLFEEMV-KKGCPPDSYCYNALIDALAKCGKTDEALAFF 435
Query: 538 HNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPF 588
+ + TY +I L + ++AL + +M D G P F
Sbjct: 436 KR-MEDEGCDQTVYTYTIMINGLFREHKNEEALKMWDMMIDKGITPTAAAF 485
Score = 49.7 bits (117), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 72/325 (22%), Positives = 133/325 (40%), Gaps = 18/325 (5%)
Query: 303 SYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFA 362
+Y+ + L +E + V ++M KG ++ + ++ ++ + EA+ L+E
Sbjct: 274 AYSLVIGGLCKEGKCVEGYAVFEKMIQKGCKVNVAIYTALIDSNAKCGNMGEAMLLFERM 333
Query: 363 MACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVG 422
+P V ++ + S +LD + + + R NG + + +S++ L G
Sbjct: 334 KKEGLEPDVVTYGVVVNCMCKSGRLDEAM--EYLEFCRVNGVAVNAMLYSSLIDGLGKAG 391
Query: 423 RMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWV 482
R+ E K+ + M + G S + + L+ GK DEA F ME G D +
Sbjct: 392 RVHEAEKLFEEMVKKGCPPDSYCYNALIDALAKCGKTDEALAFFKRMEDEGCDQTVYTYT 451
Query: 483 SLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVR 542
+I G ++A + M++K G + A L C + ACK +
Sbjct: 452 IMINGLFREHKNEEALKMWDMMIDK-GITPTAAAFRALSIGLCLSGKVARACKLLD---- 506
Query: 543 EYDLKPW----HTTYEELIKNLLVQRG-FKDALSLLCLMKDHG--FPPFVDP-FIKYVSK 594
+L P T +E+++ N+L + G K+A L D G P V I + K
Sbjct: 507 --ELAPMGVIPETAFEDML-NVLCKAGRIKEACKLADGFVDRGREIPGRVRTVLINALRK 563
Query: 595 SGTSDDAIAFLKGMTSKRFPSMSVV 619
+G +D A+ + + M V
Sbjct: 564 AGNADLALKLMHSKIGIGYDRMGSV 588
>gi|224085974|ref|XP_002307761.1| predicted protein [Populus trichocarpa]
gi|222857210|gb|EEE94757.1| predicted protein [Populus trichocarpa]
Length = 563
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 74/344 (21%), Positives = 135/344 (39%), Gaps = 59/344 (17%)
Query: 219 EKLKGIFATGSIDNSIEKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLG 278
EKL+G+F ++K+ + +ER L + +V S D+V V+++
Sbjct: 104 EKLRGVF--------VQKIKGK-----------SGIERALTECSVDLSLDVVAEVLNRGN 144
Query: 279 DEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMET 338
+ ++FF WA + + D SYN + LGR ID K L E+R +G M ET
Sbjct: 145 LGGEAMIMFFNWAIKQPMISKDVDSYNVVIRALGRRKFIDFMVKFLHELRVEGVSMNSET 204
Query: 339 CVKVLGRFSERNMVKEAVDLY-----EFAM----------------------------AC 365
V+ V +A+ ++ EF +
Sbjct: 205 FSIVIDSLVRARRVYKAIQMFGNLEEEFGFERDAESLNVLLQCLCRRSHVGAANSYFNSV 264
Query: 366 KNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVF---RENGNVLTDAMLNSVLKALISVG 422
K K NC T+ +++ S++ RVF E+G + +L+ L G
Sbjct: 265 KGKIPFNCMTY---NVIIGGWSKFGRVSEMQRVFEEMEEDGFSPDCLSFSYLLEGLGRAG 321
Query: 423 RMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWV 482
++ + I +MEE G + +N+ + + S G DE ++ + + D +
Sbjct: 322 KIEDAVMIFGSMEEKGCVPDTNVYNAMISNFISVGNFDECMKYYRCLLSKNCDPNIDTYT 381
Query: 483 SLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCS 526
+I G A + A + F +M+++ + G + + CS
Sbjct: 382 RMISGLIKASKVADALEMFDEMLDRGMVTKTG-TVTSFIEPLCS 424
Score = 43.9 bits (102), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 55/253 (21%), Positives = 105/253 (41%), Gaps = 16/253 (6%)
Query: 166 TYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRNKMTEKFEKEGLESDLEKLKGIF 225
+++ +L +G G +++ + M++KG ++V N M F G + K
Sbjct: 309 SFSYLLEGLGRAGKIEDAVMIFGSMEEKGCVPDTNVYNAMISNFISVGNFDECMKYYRCL 368
Query: 226 ATGSIDNSIEKVASRICKVVRSDIWGDDVER--QLRDLNVTFSNDLVKFVVDKLGD--EP 281
+ + D +I+ I ++++ D +E ++ D + V ++ L P
Sbjct: 369 LSKNCDPNIDTYTRMISGLIKASKVADALEMFDEMLDRGMVTKTGTVTSFIEPLCSFGPP 428
Query: 282 KKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVK 341
A++ + A + G K S+Y + L R K+ DEM+ GY +ME
Sbjct: 429 HAAMVIYTKARKVG-CKISLSAYKLLLMRLSRFGKCGMMLKIWDEMQESGYSSDMEVYEY 487
Query: 342 VLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLD--MRLFSKVV--- 396
++ + AV + E +M PS C+ L K++ S +++ RLF K+
Sbjct: 488 LISGLCNIGQFENAVLVMEESMRKGFCPSRFICSKLNNKLLASNKVERAYRLFLKIKHAR 547
Query: 397 ------RVFRENG 403
R +R NG
Sbjct: 548 HSENARRCWRSNG 560
Score = 40.8 bits (94), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 109/540 (20%), Positives = 203/540 (37%), Gaps = 82/540 (15%)
Query: 2 RHQWRFLLFRNYPRSSL---QFTGSSYYFQVPFNPNLTLHESLHTLSSLLPTSSHTFYSR 58
R++ LL + P S+L QF S ++ +N L L+ LS+LLP
Sbjct: 20 RYRLPHLLRSSIPFSTLDPPQFATSQDNIKLQYN--LGEDYVLNELSNLLP--------- 68
Query: 59 FSRLPICYSRLINLIDPKNPNFRNPMICSYSSEPAMEQKESDFTVVSDIFY--------- 109
I PK P +P Y+ + ++ K+ + V D F
Sbjct: 69 --------------ISPKPP-IPHP----YNHDRSISNKQVEIRPVFDRFLSPEEKLRGV 109
Query: 110 ---KFSDVNDISKQLELSGVVFTHEMVLKVLKNLESSPDEARRFFNWVLEKESERLSSKT 166
K + I + L V + ++V +VL + FFNW +++ +
Sbjct: 110 FVQKIKGKSGIERALTECSVDLSLDVVAEVLNRGNLGGEAMIMFFNWAIKQPMISKDVDS 169
Query: 167 YNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASH---------VRNK-------MTEKFE 210
YN+++R +G + + ++ +G + S VR + M E
Sbjct: 170 YNVVIRALGRRKFIDFMVKFLHELRVEGVSMNSETFSIVIDSLVRARRVYKAIQMFGNLE 229
Query: 211 KE-GLESDLEKLKGIFATGSIDNSIEKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDL 269
+E G E D E L N + + R V ++ + + V+ ++ +T+ ++
Sbjct: 230 EEFGFERDAESL----------NVLLQCLCRRSHVGAANSYFNSVKGKIPFNCMTY--NV 277
Query: 270 VKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRS 329
+ K G + + F EE GF D S++ + LGR I+ + M
Sbjct: 278 IIGGWSKFGRVSEMQRV-FEEMEEDGF-SPDCLSFSYLLEGLGRAGKIEDAVMIFGSMEE 335
Query: 330 KGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIV-VSKQLD 388
KG + ++ F E + Y ++ P+++ T ++ ++ SK D
Sbjct: 336 KGCVPDTNVYNAMISNFISVGNFDECMKYYRCLLSKNCDPNIDTYTRMISGLIKASKVAD 395
Query: 389 -MRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKS 447
+ +F +++ + G V + S ++ L S G I + G S +
Sbjct: 396 ALEMFDEML----DRGMVTKTGTVTSFIEPLCSFGPPHAAMVIYTKARKVGCKISLSAYK 451
Query: 448 KIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEK 507
+ RLS GK + D M+ SG +++ LI G C G + A ++ + K
Sbjct: 452 LLLMRLSRFGKCGMMLKIWDEMQESGYSSDMEVYEYLISGLCNIGQFENAVLVMEESMRK 511
>gi|302809819|ref|XP_002986602.1| hypothetical protein SELMODRAFT_124189 [Selaginella moellendorffii]
gi|300145785|gb|EFJ12459.1| hypothetical protein SELMODRAFT_124189 [Selaginella moellendorffii]
Length = 445
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 84/353 (23%), Positives = 152/353 (43%), Gaps = 19/353 (5%)
Query: 163 SSKTYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRNKMTEKFEKEGLESDLEKLK 222
+S +YN ++ + G +QE + M K+G N M K GL + +L
Sbjct: 82 NSVSYNTLIDALCSSGRIQEAREELQAMAKRGVAPNRVTYNAMATGLGKAGLLDEAFELM 141
Query: 223 GI-----FATGSIDNSIEKVASRICKVVRSDIWGDDVERQ-LRDLNVT-FSNDLVKFVVD 275
G+ FA ++ + V +CK R D +E LR++ + +L+
Sbjct: 142 GVMESAGFALTAV--TFNPVVEFLCKSGRPDEACKVMETMLLRNIEPNILTLNLILHAFC 199
Query: 276 KLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEME 335
K P++AL E GF ++NA+ + D +D K+L+ M +
Sbjct: 200 K-AARPEEALGMTDIMVEMGFCP-TIVTFNALLELFCNTDQMDSAAKLLETMAHSKCKPN 257
Query: 336 METCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKV 395
T ++ +F+E + EA E + C P++ C + + + ++D L S+
Sbjct: 258 FVTYSIMVQKFAEMGRMVEARAFLEQLVVCGYAPNLLVCNAYVAGLCKTGEMD--LASRF 315
Query: 396 VRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSS 455
+ V E G A NS+++ +GRM E ++L+ M G + S S + L S
Sbjct: 316 LTVMAEEGCRANTATYNSLVEGFCKLGRMDEAERVLEEMIAEGSLPDSTTYSVLIQGLCS 375
Query: 456 AGKKDEANEFMDHMEAS----GSDVGDKMWVSLIKGHCVAGDLDKAADCFQKM 504
AG+ + A FM ++ + + +V LI+ C G++D+AA ++M
Sbjct: 376 AGQIEHA--FMVMLQVTRAVESARPDPATFVKLIEKLCELGEMDRAALVLERM 426
Score = 60.1 bits (144), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 67/280 (23%), Positives = 114/280 (40%), Gaps = 36/280 (12%)
Query: 297 VKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAV 356
V + +YNAMA+ LG+ +D ++++ M S G+ + T V+ + EA
Sbjct: 114 VAPNRVTYNAMATGLGKAGLLDEAFELMGVMESAGFALTAVTFNPVVEFLCKSGRPDEAC 173
Query: 357 DLYEFAMACKNKPSVNCCTFLLRKI---VVSKQLDMRLFSKVVR---------VFRENGN 404
+ E T LLR I +++ L + F K R + E G
Sbjct: 174 KVME--------------TMLLRNIEPNILTLNLILHAFCKAARPEEALGMTDIMVEMGF 219
Query: 405 VLTDAMLNSVLKALISVGRMGECNKILKAMEEG----GFIASSNMKSKIAFRLSSAGKKD 460
T N++L+ + +M K+L+ M F+ S M K A G+
Sbjct: 220 CPTIVTFNALLELFCNTDQMDSAAKLLETMAHSKCKPNFVTYSIMVQKFA----EMGRMV 275
Query: 461 EANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLL 520
EA F++ + G + + + G C G++D A+ F ++ +EG + L
Sbjct: 276 EARAFLEQLVVCGYAPNLLVCNAYVAGLCKTGEMDLASR-FLTVMAEEGCRANTATYNSL 334
Query: 521 VNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNL 560
V +C R +A + + + E L P TTY LI+ L
Sbjct: 335 VEGFCKLGRMDEAERVLEEMIAEGSL-PDSTTYSVLIQGL 373
Score = 46.2 bits (108), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 36/147 (24%), Positives = 71/147 (48%), Gaps = 2/147 (1%)
Query: 412 NSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEA 471
N+++ AL S GR+ E + L+AM + G + + +A L AG DEA E M ME+
Sbjct: 87 NTLIDALCSSGRIQEAREELQAMAKRGVAPNRVTYNAMATGLGKAGLLDEAFELMGVMES 146
Query: 472 SGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAI 531
+G + + +++ C +G D+A + M+ + + ++L+++ +C R
Sbjct: 147 AGFALTAVTFNPVVEFLCKSGRPDEACKVMETMLLRNIEPNI-LTLNLILHAFCKAARPE 205
Query: 532 DACKFVHNCVREYDLKPWHTTYEELIK 558
+A + + E P T+ L++
Sbjct: 206 EALGMT-DIMVEMGFCPTIVTFNALLE 231
Score = 43.9 bits (102), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 46/217 (21%), Positives = 89/217 (41%), Gaps = 52/217 (23%)
Query: 481 WVSLIKGHCVAGDLDKAADCFQKMVEK-------------------EGTSHAGY------ 515
+ +L+ GHC+AG+ D+A +++VE+ +G S AG+
Sbjct: 17 YGTLVHGHCLAGEFDEA----KRLVEEFKDTGMSPGSLVVLHNLMLKGFSEAGFVDEAKS 72
Query: 516 ------------AIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQ 563
+ + L++ CS R +A + + + + P TY + L
Sbjct: 73 HLHRMDCKPNSVSYNTLIDALCSSGRIQEAREELQAMAKR-GVAPNRVTYNAMATGLGKA 131
Query: 564 RGFKDALSLLCLMKDHGFPPFV---DPFIKYVSKSGTSDDAIAFLKGMTSKRF-PSMSVV 619
+A L+ +M+ GF +P ++++ KSG D+A ++ M + P++ +
Sbjct: 132 GLLDEAFELMGVMESAGFALTAVTFNPVVEFLCKSGRPDEACKVMETMLLRNIEPNILTL 191
Query: 620 LCLFAAFFQARRHSEAQDL------LSKCPRYVRNHA 650
+ AF +A R EA + + CP V +A
Sbjct: 192 NLILHAFCKAARPEEALGMTDIMVEMGFCPTIVTFNA 228
>gi|302771513|ref|XP_002969175.1| hypothetical protein SELMODRAFT_90172 [Selaginella moellendorffii]
gi|300163680|gb|EFJ30291.1| hypothetical protein SELMODRAFT_90172 [Selaginella moellendorffii]
Length = 399
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 56/234 (23%), Positives = 100/234 (42%), Gaps = 7/234 (2%)
Query: 412 NSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEA 471
N+++ L GR+ E ++L ME GF A+ + + LSSAG+ EA M M
Sbjct: 93 NTLIAGLCKAGRLDEAQQVLDEMERSGFAANLVTYNTLINGLSSAGRSGEAVLVMQGMTT 152
Query: 472 SGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAI 531
+ + + ++I G C +G++D+A ++M ++ G S + +L+N C +
Sbjct: 153 TPDT---QTYNAIIHGFCKSGEIDRAYGFLEEMKQRAGCSPDTFTYSILINGLCKSSNLR 209
Query: 532 DACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPF--- 588
A + + + D + L+ + A LL M +HG P V +
Sbjct: 210 KADELLQEMIGRKDCCASVVAFNTLVDGYCKAQDLDRARELLSSMLEHGCAPDVVTYSTI 269
Query: 589 IKYVSKSGTSDDAIAFLKGMTSKRF-PSMSVVLCLFAAFFQARRHSEAQDLLSK 641
I + + G D A L+ M S+ P + L +A + EA L+ +
Sbjct: 270 IDGLCRCGDVDKGFALLEKMVSRGCKPDVVTYTVLVTGLCKAGKMVEACRLVKR 323
Score = 53.5 bits (127), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 65/133 (48%), Gaps = 4/133 (3%)
Query: 481 WVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNC 540
+ L++ HC+AG+L A D ++M ++ G + + V+ C + +A + V N
Sbjct: 21 YFVLVRAHCLAGELQAAMDLLREMEQQPGMAPTPSMYNFFVHALCKSGKVPEAMEVVKN- 79
Query: 541 VREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFV---DPFIKYVSKSGT 597
+++ KP T+ LI L +A +L M+ GF + + I +S +G
Sbjct: 80 MKDGACKPDVVTFNTLIAGLCKAGRLDEAQQVLDEMERSGFAANLVTYNTLINGLSSAGR 139
Query: 598 SDDAIAFLKGMTS 610
S +A+ ++GMT+
Sbjct: 140 SGEAVLVMQGMTT 152
Score = 45.1 bits (105), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 62/290 (21%), Positives = 111/290 (38%), Gaps = 9/290 (3%)
Query: 293 ESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMV 352
+ G K D ++N + + L + +D +VLDEM G+ + T ++ S
Sbjct: 81 KDGACKPDVVTFNTLIAGLCKAGRLDEAQQVLDEMERSGFAANLVTYNTLINGLSSAGRS 140
Query: 353 KEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLN 412
EAV + + + + N ++ S ++D R + + ++ D
Sbjct: 141 GEAVLVMQGMTTTPDTQTYNA---IIHGFCKSGEID-RAYG-FLEEMKQRAGCSPDTFTY 195
Query: 413 SVL-KALISVGRMGECNKILKAM-EEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHME 470
S+L L + + +++L+ M AS + + A D A E + M
Sbjct: 196 SILINGLCKSSNLRKADELLQEMIGRKDCCASVVAFNTLVDGYCKAQDLDRARELLSSML 255
Query: 471 ASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRA 530
G + ++I G C GD+DK +KMV + G +LV C +
Sbjct: 256 EHGCAPDVVTYSTIIDGLCRCGDVDKGFALLEKMVSR-GCKPDVVTYTVLVTGLCKAGKM 314
Query: 531 IDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHG 580
++AC+ V + E P TY + L A LL ++D G
Sbjct: 315 VEACRLVKR-MLEDGCTPNAVTYSLVFDGLCKIDKLDMANDLLTSIRDKG 363
>gi|449446161|ref|XP_004140840.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g55630-like [Cucumis sativus]
Length = 476
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 80/385 (20%), Positives = 156/385 (40%), Gaps = 18/385 (4%)
Query: 238 ASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDE---------PKKALIFF 288
A ++ ++++ D G D L +L + S LV V+ + K FF
Sbjct: 79 AEKVIEILKQDGPGFDTFLALDELQLKVSGVLVGEVLKGILKSKSVLNKTQCAKLGYKFF 138
Query: 289 RWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSE 348
W+ +H +SY+ + + + W+VLDEM KGY + T + ++ E
Sbjct: 139 IWSGRIENYRHTVNSYHIIMKIFAECEEFKAMWRVLDEMTEKGYPVTARTFMILICTCGE 198
Query: 349 RNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENG-NVLT 407
+ K V+ + + +P + +L +V+ KQ + + + ++ ++LT
Sbjct: 199 AGLAKRVVERFIKSKTFNFRPYKHSYNAILHGLVIVKQYKLIGWVYDQMLLDDHSPDILT 258
Query: 408 DAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMD 467
N +L + +G++ + +++L M GF + + + + L K A ++
Sbjct: 259 ---YNVLLFSSCKLGKLDQFHRLLDEMARKGFSPDFHTYNILLYVLGKGDKPLAALNLLN 315
Query: 468 HMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSK 527
HM G + +LI G AG+LD A F + G +++ ++
Sbjct: 316 HMREVGFGPNVLHFTTLINGLSRAGNLD-ACKYFFDELGNNGCIPDVVCYTVMITSFTEA 374
Query: 528 NRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPP---F 584
+ A F + + L P TY +I+ + FK+A S+L M+ G P
Sbjct: 375 GQHEKARAFFDEMIMKGQL-PNVFTYNSMIRGFCMVGKFKEAYSMLSEMESRGCRPNFLV 433
Query: 585 VDPFIKYVSKSGTSDDAIAFLKGMT 609
+ Y+ +G +A +K M
Sbjct: 434 YSTLVSYLRNAGKLGEAHKVIKQMV 458
Score = 50.1 bits (118), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 87/374 (23%), Positives = 154/374 (41%), Gaps = 33/374 (8%)
Query: 120 QLELSGVVFTHEMVLKVLK-----NLESSPDEARRFFNWVLEKESERLSSKTYNLMLRIV 174
QL++SGV+ E++ +LK N +FF W E+ R + +Y+++++I
Sbjct: 103 QLKVSGVL-VGEVLKGILKSKSVLNKTQCAKLGYKFFIWSGRIENYRHTVNSYHIIMKIF 161
Query: 175 GVHGLVQEFWGLVDVMKKKGYGVASHVRNKMTEKFEKEGLESDL-EKL--KGIFATGSID 231
+ W ++D M +KGY V + + + GL + E+ F
Sbjct: 162 AECEEFKAMWRVLDEMTEKGYPVTARTFMILICTCGEAGLAKRVVERFIKSKTFNFRPYK 221
Query: 232 NSIEKVASRICKVVRSDIWGDDVERQLRDLNV--TFSNDLVKFVVDKLGDEPKKALIFFR 289
+S + + V + + G ++ L D + + +++ F KLG + F R
Sbjct: 222 HSYNAILHGLVIVKQYKLIGWVYDQMLLDDHSPDILTYNVLLFSSCKLGKLDQ----FHR 277
Query: 290 WAEE---SGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYE---MEMETCVKVL 343
+E GF D +YN + VLG+ D +L+ MR G+ + T + L
Sbjct: 278 LLDEMARKGF-SPDFHTYNILLYVLGKGDKPLAALNLLNHMREVGFGPNVLHFTTLINGL 336
Query: 344 GRFSERNMVKEAVDLYEFAMACKNK--PSVNCCTFLLRKIVVSKQLD-MRLFSKVVRVFR 400
R + K Y F N P V C T ++ + Q + R F + +
Sbjct: 337 SRAGNLDACK-----YFFDELGNNGCIPDVVCYTVMITSFTEAGQHEKARAFFDEMIMKG 391
Query: 401 ENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKD 460
+ NV T NS+++ VG+ E +L ME G + + S + L +AGK
Sbjct: 392 QLPNVFT---YNSMIRGFCMVGKFKEAYSMLSEMESRGCRPNFLVYSTLVSYLRNAGKLG 448
Query: 461 EANEFMDHMEASGS 474
EA++ + M +G
Sbjct: 449 EAHKVIKQMVENGQ 462
>gi|449477018|ref|XP_004154904.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g19290-like [Cucumis sativus]
Length = 567
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 111/485 (22%), Positives = 185/485 (38%), Gaps = 113/485 (23%)
Query: 258 LRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGRED-- 315
L +L+ +FSN+L+ V+ L P +L FF+ A + + D SSY + +L R
Sbjct: 89 LANLSFSFSNELMDLVLRNLRLNPDASLEFFKLASKQPKFRPDVSSYCKIVHILSRARMY 148
Query: 316 -------------CIDRFW--KVLDEMRSKGYEMEMETCV--KVLGRFSERNMVKEAVDL 358
C + + V DE+ S E V +L ++E+ M K A+ +
Sbjct: 149 KEVRVYLNELVVLCKNNYIASAVWDELVSVYREFSFSPTVFDMILKVYAEKGMTKFALCV 208
Query: 359 YEFAMACKNKPSVNCCTFLLRKIV----------VSKQL-------DMRLFSKVVRVFRE 401
++ C PS+ C LL +V V +Q+ D+ ++ +V + +
Sbjct: 209 FDNMGKCGRVPSLRSCNSLLSNLVQNGEAFKALLVYEQMIALGILPDIFSYTIMVNAYCK 268
Query: 402 NG-------------------NVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIAS 442
G NV+T NS++ +S+G + K+L M E G +
Sbjct: 269 EGRVDEAFNFVKEMERSCCEPNVVT---YNSLIDGYVSLGDVCGAKKVLALMSEKGIPEN 325
Query: 443 SN------------------------MKSKIAF-----------RLSSAGKKDEANEFMD 467
S M K F +AG+ D+A D
Sbjct: 326 SRTYTLLIKGYCKRGQMEQAEKLFGCMMEKNLFVDEHVYGVLIHAYCTAGRVDDALRIRD 385
Query: 468 HMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSK 527
M G + + SLI G+C G ++KAA+ M + Y + L++ +C +
Sbjct: 386 AMLKVGLKMNTVICNSLINGYCKLGHVNKAAEVLVSM-KDWNLKPDSYGYNTLLDGFCKQ 444
Query: 528 N---RAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPP- 583
+A C +HN + + TY L+KNL + AL + LM G P
Sbjct: 445 EDFIKAFKLCDEMHNKGVNFTV----VTYNTLLKNLFHVGHVEHALHIWNLMHKRGVAPN 500
Query: 584 ------FVDPFIKYVSKSGTSDDAIAFLKGMTSKRFP-SMSVVLCLFAAFFQARRHSEAQ 636
+D F K GT D A+ K SK F S+++ + F + + +AQ
Sbjct: 501 EVTYCTLLDAFF----KVGTFDRAMMIWKDALSKGFTKSITLYNTMICGFCKMEKLVQAQ 556
Query: 637 DLLSK 641
++ K
Sbjct: 557 EIFLK 561
>gi|226530981|ref|NP_001141613.1| uncharacterized protein LOC100273731 [Zea mays]
gi|194705268|gb|ACF86718.1| unknown [Zea mays]
gi|414870824|tpg|DAA49381.1| TPA: hypothetical protein ZEAMMB73_722490 [Zea mays]
Length = 504
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 84/387 (21%), Positives = 159/387 (41%), Gaps = 18/387 (4%)
Query: 238 ASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFV-------VDKLGDE--PKKALIFF 288
A RI +++ D G L ++ S +LV+ V VD + E PK A FF
Sbjct: 107 ADRIFRILLQDGPGFSTRHALDEMRPKVSIELVREVLFRIVVSVDSVNRERYPKLAYKFF 166
Query: 289 RWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSE 348
WA + +H S YN + V + W++ +EM +KG + T ++ +
Sbjct: 167 IWAGQQEGYQHSTSMYNLVMKVFAECGEVKAMWRLFEEMAAKGLPVSSRTFHLLICASVK 226
Query: 349 RNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRE-NGNVLT 407
+ + V+ + + +P N +L ++ +Q + + + + +VLT
Sbjct: 227 VGLRRRLVERFIRSSTFNYRPFRNAFNAILYTLLTIEQYSLIEWVHEKMILEGYSPDVLT 286
Query: 408 DAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMD 467
N VL+A +G++ + +++L M + G + + + L K A ++
Sbjct: 287 ---YNVVLRAKYMLGKLDQFHQLLDEMGKNGLTPDLHTYNLLLHVLGKGDKPLAALNLLN 343
Query: 468 HMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSK 527
+M G + +LI G AG+L+ F +M+ K+G +++ +Y +
Sbjct: 344 YMSDVGCRPNVLHFTNLIDGLGRAGNLEACRYFFDEMM-KKGCDPDVVCYTVMIASYVAA 402
Query: 528 NRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPP---F 584
+A +F + + L P TY +I+ L F A ++L M HG P
Sbjct: 403 GEFEEAQRFFDDMLMRGQL-PNVYTYNSMIQGLCAVGEFDKAFTMLKDMDSHGCTPNFSV 461
Query: 585 VDPFIKYVSKSGTSDDAIAFLKGMTSK 611
++ + +G A +K MT K
Sbjct: 462 YSSLVRRLRNAGKDTQANNVIKYMTDK 488
Score = 63.2 bits (152), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 76/344 (22%), Positives = 142/344 (41%), Gaps = 17/344 (4%)
Query: 139 NLESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVA 198
N E P A +FF W ++E + S+ YNL++++ G V+ W L + M KG V+
Sbjct: 154 NRERYPKLAYKFFIWAGQQEGYQHSTSMYNLVMKVFAECGEVKAMWRLFEEMAAKGLPVS 213
Query: 199 SHVRNKMTEKFEKEGLESDL-EKL--KGIFATGSIDNSIEKVASRICKVVRSDIWGDDVE 255
S + + K GL L E+ F N+ + + + + + E
Sbjct: 214 SRTFHLLICASVKVGLRRRLVERFIRSSTFNYRPFRNAFNAILYTLLTIEQYSLIEWVHE 273
Query: 256 RQLRDLNVTFSNDLVKF-VVDKLGDEPKKALIFFRWAEESG--FVKHDESSYNAMASVLG 312
+ + + +S D++ + VV + K F + +E G + D +YN + VLG
Sbjct: 274 KMILE---GYSPDVLTYNVVLRAKYMLGKLDQFHQLLDEMGKNGLTPDLHTYNLLLHVLG 330
Query: 313 REDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVN 372
+ D +L+ M G + ++ ++ ++ M P V
Sbjct: 331 KGDKPLAALNLLNYMSDVGCRPNVLHFTNLIDGLGRAGNLEACRYFFDEMMKKGCDPDVV 390
Query: 373 CCTFLLRKIVVSKQLDMRLFSKVVRVFRE---NGNVLTDAMLNSVLKALISVGRMGECNK 429
C T ++ V + + F + R F + G + NS+++ L +VG +
Sbjct: 391 CYTVMIASYVAAGE-----FEEAQRFFDDMLMRGQLPNVYTYNSMIQGLCAVGEFDKAFT 445
Query: 430 ILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASG 473
+LK M+ G + ++ S + RL +AGK +AN + +M G
Sbjct: 446 MLKDMDSHGCTPNFSVYSSLVRRLRNAGKDTQANNVIKYMTDKG 489
>gi|359488005|ref|XP_002263693.2| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g12700, mitochondrial-like [Vitis vinifera]
Length = 586
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 78/355 (21%), Positives = 148/355 (41%), Gaps = 27/355 (7%)
Query: 300 DESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLY 359
D +++ + L E I + D+M +G++ + T ++ + A+ L
Sbjct: 138 DTATFTTLIRGLCVEGKIGDALHLFDKMIGEGFQPNVVTYGTLINGLCKVGNTNAAIRLL 197
Query: 360 EFAMACKNKPSVNCCTFLLRKIVVSKQLD--MRLFSKVVRVFRENGNVLTDAMLN--SVL 415
+P V T ++ + +Q+ LFSK+V G ++ + S++
Sbjct: 198 RSMEQGNCQPDVVVYTSIIDSLCKDRQVTEAFNLFSKMV------GQGISPDIFTYTSLI 251
Query: 416 KALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSD 475
+L ++ +L M + + S + L GK EA++ +D M G +
Sbjct: 252 HSLCNLCEWKHVTTLLNQMINSKIMPDVVIFSTVVDALCKEGKITEAHDVVDMMIIRGVE 311
Query: 476 VGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDL-----LVNTYCSKNRA 530
+ +L+ GHC+ ++D+A F MV H GYA ++ L+N YC R
Sbjct: 312 PNVVTYNALMDGHCLQSEMDEAVKVFDTMV------HNGYAPNVISYNTLINGYCKIQR- 364
Query: 531 IDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPF-- 588
+D ++ + + +L P TY L+ V R +DA++L M HG P + +
Sbjct: 365 MDKATYLFEEMCQKELIPNTVTYNTLMHXCHVGR-LQDAIALFHEMVAHGQIPDLATYRI 423
Query: 589 -IKYVSKSGTSDDAIAFLKGMTSKRF-PSMSVVLCLFAAFFQARRHSEAQDLLSK 641
+ Y+ K D+A+A LK + P + + + +A A+D+ S
Sbjct: 424 LLDYLCKKSHLDEAMALLKTIEGSNMDPDIQIYTIVIDGMCRAGELEAARDIFSN 478
Score = 46.2 bits (108), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 62/131 (47%), Gaps = 5/131 (3%)
Query: 515 YAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLC 574
Y +++L+N++C NR A + + + +P T+ LI+ L V+ DAL L
Sbjct: 105 YTLNILINSFCHLNRLGFAFSVLAK-ILKLGHQPDTATFTTLIRGLCVEGKIGDALHLFD 163
Query: 575 LMKDHGFPPFVDPF---IKYVSKSGTSDDAIAFLKGMTSKRF-PSMSVVLCLFAAFFQAR 630
M GF P V + I + K G ++ AI L+ M P + V + + + R
Sbjct: 164 KMIGEGFQPNVVTYGTLINGLCKVGNTNAAIRLLRSMEQGNCQPDVVVYTSIIDSLCKDR 223
Query: 631 RHSEAQDLLSK 641
+ +EA +L SK
Sbjct: 224 QVTEAFNLFSK 234
Score = 46.2 bits (108), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 61/283 (21%), Positives = 110/283 (38%), Gaps = 15/283 (5%)
Query: 304 YNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAM 363
++ + L +E I V+D M +G E + T ++ ++ + EAV +++ +
Sbjct: 282 FSTVVDALCKEGKITEAHDVVDMMIIRGVEPNVVTYNALMDGHCLQSEMDEAVKVFDTMV 341
Query: 364 ACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRE--NGNVLTDAMLNSVLKALISV 421
P+V L+ +++D K +F E ++ + + + L V
Sbjct: 342 HNGYAPNVISYNTLINGYCKIQRMD-----KATYLFEEMCQKELIPNTVTYNTLMHXCHV 396
Query: 422 GRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMW 481
GR+ + + M G I + L DEA + +E S D +++
Sbjct: 397 GRLQDAIALFHEMVAHGQIPDLATYRILLDYLCKKSHLDEAMALLKTIEGSNMDPDIQIY 456
Query: 482 VSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCV 541
+I G C AG+L+ A D F + K G +++N C + +A K
Sbjct: 457 TIVIDGMCRAGELEAARDIFSNLSSK-GLRPNVRTYTIMINGLCRRGLLDEANKL----F 511
Query: 542 REYD---LKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGF 581
E D P TY + + LL + A+ LL M GF
Sbjct: 512 MEMDGNGCSPDGCTYNTITQGLLQNKEALRAIQLLQEMLARGF 554
>gi|224069551|ref|XP_002326371.1| predicted protein [Populus trichocarpa]
gi|222833564|gb|EEE72041.1| predicted protein [Populus trichocarpa]
Length = 726
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 66/306 (21%), Positives = 131/306 (42%), Gaps = 18/306 (5%)
Query: 303 SYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFA 362
+Y M + +E +D ++L+EM KG + T ++ + E ++ A+++
Sbjct: 356 TYTVMVDAMCKERKLDESRRILNEMMEKGLVPSVVTYNALIRGYCEEGRIEAALEILGLM 415
Query: 363 MACKNKPSVNC-----CTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAML--NSVL 415
+ +P+ C F RK V M L SK++ + LT +++ NS++
Sbjct: 416 ESNNCRPNERTYNELICGFSKRKHV---HKAMTLLSKMLE------SKLTPSLVTYNSLI 466
Query: 416 KALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSD 475
G K+L ++E G + S L + + +EA + + ++ G
Sbjct: 467 HVQCKAGHFDSAYKLLDLLKENGLVPDQWTYSVFIDTLCKSKRMEEACDLFNSLKEKGIK 526
Query: 476 VGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACK 535
+ M+ +LI GHC AG +D+A ++M ++ ++ + L+ C + + +
Sbjct: 527 ANEVMYTALIDGHCKAGKIDEAISLLERMHSEDCLPNSS-TYNSLIYGVCKEGKVQEGLS 585
Query: 536 FVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPFIKYVSKS 595
V N + + +KP TY LI+ +L + F A + M G P V + ++
Sbjct: 586 MVEN-MSKMGVKPTVATYTILIEEMLREGDFDHANRVFNQMVSFGHKPDVYTYTAFIHTY 644
Query: 596 GTSDDA 601
TS +
Sbjct: 645 CTSGNV 650
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 68/317 (21%), Positives = 133/317 (41%), Gaps = 11/317 (3%)
Query: 300 DESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLY 359
D +Y ++ R + ++ +KV + M +KG + ++ E + E + L+
Sbjct: 248 DSFTYTSLILGYCRNNDVNSAYKVFNMMPNKGCRRNEVSYTTIIHGLCEAGRIDEGISLF 307
Query: 360 EFAMACKNKPSVNCCTFLLRKIVVS-KQLD-MRLFSKVVRVFRENGNVLTDAMLNSVLKA 417
+ P+V T ++ + + + L+ M LF++ +R NV T ++ + A
Sbjct: 308 KKMREDDCYPTVRTYTVIIHALFGNDRNLEGMDLFNE-MRERSCEPNVHTYTVM---VDA 363
Query: 418 LISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVG 477
+ ++ E +IL M E G + S + + G+ + A E + ME++
Sbjct: 364 MCKERKLDESRRILNEMMEKGLVPSVVTYNALIRGYCEEGRIEAALEILGLMESNNCRPN 423
Query: 478 DKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFV 537
++ + LI G + KA KM+E + T + + L++ C A K +
Sbjct: 424 ERTYNELICGFSKRKHVHKAMTLLSKMLESKLTP-SLVTYNSLIHVQCKAGHFDSAYKLL 482
Query: 538 HNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPP---FVDPFIKYVSK 594
+ ++E L P TY I L + ++A L +K+ G I K
Sbjct: 483 -DLLKENGLVPDQWTYSVFIDTLCKSKRMEEACDLFNSLKEKGIKANEVMYTALIDGHCK 541
Query: 595 SGTSDDAIAFLKGMTSK 611
+G D+AI+ L+ M S+
Sbjct: 542 AGKIDEAISLLERMHSE 558
Score = 50.8 bits (120), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 69/342 (20%), Positives = 129/342 (37%), Gaps = 8/342 (2%)
Query: 303 SYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFA 362
SYN + +L R ID +V EM + + T ++ +S+ + EA +LY +
Sbjct: 181 SYNELLMMLARFLMIDEMKRVYTEMLNDMIVPNIYTLNTMVNAYSKMGNIVEA-NLY-VS 238
Query: 363 MACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVG 422
+ S + T+ + + D+ KV + G + +++ L G
Sbjct: 239 KIFQAGLSPDSFTYTSLILGYCRNNDVNSAYKVFNMMPNKGCRRNEVSYTTIIHGLCEAG 298
Query: 423 RMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWV 482
R+ E + K M E + + I L + E + + M + +
Sbjct: 299 RIDEGISLFKKMREDDCYPTVRTYTVIIHALFGNDRNLEGMDLFNEMRERSCEPNVHTYT 358
Query: 483 SLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVR 542
++ C LD++ +M+EK G + + L+ YC + R I+A + +
Sbjct: 359 VMVDAMCKERKLDESRRILNEMMEK-GLVPSVVTYNALIRGYCEEGR-IEAALEILGLME 416
Query: 543 EYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFV---DPFIKYVSKSGTSD 599
+ +P TY ELI ++ A++LL M + P + + I K+G D
Sbjct: 417 SNNCRPNERTYNELICGFSKRKHVHKAMTLLSKMLESKLTPSLVTYNSLIHVQCKAGHFD 476
Query: 600 DAIAFLKGMTSKRF-PSMSVVLCLFAAFFQARRHSEAQDLLS 640
A L + P +++R EA DL +
Sbjct: 477 SAYKLLDLLKENGLVPDQWTYSVFIDTLCKSKRMEEACDLFN 518
Score = 48.9 bits (115), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 64/317 (20%), Positives = 123/317 (38%), Gaps = 11/317 (3%)
Query: 298 KHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRF--SERNMVKEA 355
+ +E SY + L ID + +MR + T ++ ++RN+ E
Sbjct: 281 RRNEVSYTTIIHGLCEAGRIDEGISLFKKMREDDCYPTVRTYTVIIHALFGNDRNL--EG 338
Query: 356 VDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVL 415
+DL+ +P+V+ T ++ + ++LD +++ E G V + N+++
Sbjct: 339 MDLFNEMRERSCEPNVHTYTVMVDAMCKERKLDES--RRILNEMMEKGLVPSVVTYNALI 396
Query: 416 KALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSD 475
+ GR+ +IL ME + +++ S +A + M S
Sbjct: 397 RGYCEEGRIEAALEILGLMESNNCRPNERTYNELICGFSKRKHVHKAMTLLSKMLESKLT 456
Query: 476 VGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACK 535
+ SLI C AG D A ++++ G + + ++T C R +AC
Sbjct: 457 PSLVTYNSLIHVQCKAGHFDSAYKLLD-LLKENGLVPDQWTYSVFIDTLCKSKRMEEACD 515
Query: 536 FVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPP---FVDPFIKYV 592
N ++E +K Y LI +A+SLL M P + I V
Sbjct: 516 LF-NSLKEKGIKANEVMYTALIDGHCKAGKIDEAISLLERMHSEDCLPNSSTYNSLIYGV 574
Query: 593 SKSGTSDDAIAFLKGMT 609
K G + ++ ++ M+
Sbjct: 575 CKEGKVQEGLSMVENMS 591
Score = 45.1 bits (105), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 48/235 (20%), Positives = 95/235 (40%), Gaps = 6/235 (2%)
Query: 411 LNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHME 470
LN+++ A +G + E N + + + G S + + + A + + M
Sbjct: 217 LNTMVNAYSKMGNIVEANLYVSKIFQAGLSPDSFTYTSLILGYCRNNDVNSAYKVFNMMP 276
Query: 471 ASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRA 530
G + + ++I G C AG +D+ F+KM E + ++++ +R
Sbjct: 277 NKGCRRNEVSYTTIIHGLCEAGRIDEGISLFKKMREDDCYPTVR-TYTVIIHALFGNDRN 335
Query: 531 IDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFV---DP 587
++ N +RE +P TY ++ + +R ++ +L M + G P V +
Sbjct: 336 LEGMDLF-NEMRERSCEPNVHTYTVMVDAMCKERKLDESRRILNEMMEKGLVPSVVTYNA 394
Query: 588 FIKYVSKSGTSDDAIAFLKGMTSKRF-PSMSVVLCLFAAFFQARRHSEAQDLLSK 641
I+ + G + A+ L M S P+ L F + + +A LLSK
Sbjct: 395 LIRGYCEEGRIEAALEILGLMESNNCRPNERTYNELICGFSKRKHVHKAMTLLSK 449
Score = 39.3 bits (90), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 49/255 (19%), Positives = 103/255 (40%), Gaps = 4/255 (1%)
Query: 303 SYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFA 362
+YN++ V + D +K+LD ++ G + T + + ++EA DL+
Sbjct: 461 TYNSLIHVQCKAGHFDSAYKLLDLLKENGLVPDQWTYSVFIDTLCKSKRMEEACDLFNSL 520
Query: 363 MACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVG 422
K + T L+ + ++D S + R+ E+ + + NS++ + G
Sbjct: 521 KEKGIKANEVMYTALIDGHCKAGKID-EAISLLERMHSEDC-LPNSSTYNSLIYGVCKEG 578
Query: 423 RMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWV 482
++ E +++ M + G + + + + G D AN + M + G +
Sbjct: 579 KVQEGLSMVENMSKMGVKPTVATYTILIEEMLREGDFDHANRVFNQMVSFGHKPDVYTYT 638
Query: 483 SLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVR 542
+ I +C +G++ +A +M+E G LL++ Y A DA + +
Sbjct: 639 AFIHTYCTSGNVKEAEGMMARMIEA-GVMPDSLTYTLLISAYERLGLAYDAFNVLKRML- 696
Query: 543 EYDLKPWHTTYEELI 557
+ P H + LI
Sbjct: 697 DAGCDPSHPIWNNLI 711
>gi|297605196|ref|NP_001056837.2| Os06g0152500 [Oryza sativa Japonica Group]
gi|255676726|dbj|BAF18751.2| Os06g0152500 [Oryza sativa Japonica Group]
Length = 717
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 113/537 (21%), Positives = 225/537 (41%), Gaps = 46/537 (8%)
Query: 141 ESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASH 200
++S ARRF + +L + + TYN+++R + G ++E G+V M+ G +
Sbjct: 130 DASLPSARRFLSSML-RHGVAPNVYTYNILVRALCARGRLEEAVGVVGDMRGAGCAPNAV 188
Query: 201 VRNKMTEKFEKEGLESDLEKLKGIF-ATGSIDNSI---EKVASRICKVVRSD----IWGD 252
N + F + G E++ + G+ ++ + + +CK R + ++ +
Sbjct: 189 TYNTLVAAFCRAGELDGAERVVSLMREEGNAKPNLVTFNSMVNGLCKAGRMEGARKVFDE 248
Query: 253 DVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLG 312
V L V+++ L + K+G ++L F + G V D ++ ++
Sbjct: 249 MVREGLAPDVVSYNTLLSGYC--KVGC-LHESLAVFSEMTQRGLVP-DVVTFTSLIHATC 304
Query: 313 REDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVN 372
+ +++ ++ +MR +G M T ++ F ++ + +A+ E C +PSV
Sbjct: 305 KAGNLEQAVALVAQMRERGLRMNEVTFTALIDGFCKKGFLDDALLAVEEMRKCGIQPSVV 364
Query: 373 CCTFLLRKIVVSKQLDM-RLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKIL 431
C L+ ++D+ R + + R +V+T ++++ VG + ++
Sbjct: 365 CYNALINGYCKLGRMDLARELIREMEAKRVKPDVVT---YSTIISGYCKVGNLDSAFQLN 421
Query: 432 KAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVA 491
+ M + G + + S + L + ++A E ++M G + + +LI GHC
Sbjct: 422 QKMLKKGVLPDAITYSSLIRGLCEEKRLNDACELFENMLQLGVQPDEFTYTTLIDGHCKE 481
Query: 492 GDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHT 551
G+++KA +M+ K G +L+N R +A + + E D P +
Sbjct: 482 GNVEKALSLHDEMIRK-GVLPDVVTYSVLINGLSKSARTKEAHRLLFKLYHE-DPVPDNI 539
Query: 552 TYEELIKNLLVQRG-FKDALSLL---C---LMK--DHGFPPFVDP-----------FIKY 591
Y+ L+ L + FK ++LL C LMK D + +D I
Sbjct: 540 KYDALM--LCCSKAEFKSVVALLKGFCMKGLMKEADKVYQSMLDRNWKLDGSVYSILIHG 597
Query: 592 VSKSGTSDDAIAFLKGMTSKRF-PSMSVVLCLFAAFFQARRHSEA----QDLLSKCP 643
+ G A++F K M F P+ + + L F+ EA QDLL+ CP
Sbjct: 598 HCRGGNVRKALSFHKQMLRSGFSPNSTSTISLVRGLFEEGMVVEADNAIQDLLTCCP 654
Score = 48.1 bits (113), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 49/203 (24%), Positives = 79/203 (38%), Gaps = 5/203 (2%)
Query: 412 NSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEA 471
N+VL AL S + + L +M G + + + L + G+ +EA + M
Sbjct: 122 NAVLLAL-SDASLPSARRFLSSMLRHGVAPNVYTYNILVRALCARGRLEEAVGVVGDMRG 180
Query: 472 SGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAI 531
+G + +L+ C AG+LD A M E+ + +VN C R
Sbjct: 181 AGCAPNAVTYNTLVAAFCRAGELDGAERVVSLMREEGNAKPNLVTFNSMVNGLCKAGRME 240
Query: 532 DACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPF--- 588
A K VRE L P +Y L+ ++L++ M G P V F
Sbjct: 241 GARKVFDEMVRE-GLAPDVVSYNTLLSGYCKVGCLHESLAVFSEMTQRGLVPDVVTFTSL 299
Query: 589 IKYVSKSGTSDDAIAFLKGMTSK 611
I K+G + A+A + M +
Sbjct: 300 IHATCKAGNLEQAVALVAQMRER 322
>gi|357111070|ref|XP_003557338.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g06920-like [Brachypodium distachyon]
Length = 878
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 76/323 (23%), Positives = 141/323 (43%), Gaps = 19/323 (5%)
Query: 266 SNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLD 325
++D+V +V+ L + P A FF A S +YNA+ L + + KVL+
Sbjct: 74 AHDVVVYVLRSLKN-PSLAAPFFLLASASSSQPLPPDAYNAVLPFLSHD--LAALEKVLE 130
Query: 326 EMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSK 385
EM GY + C ++ +++A + K +P + T L+ + ++
Sbjct: 131 EMSHLGYGLPNPACAALVATLVRSRRLEDAFRVIGAMRHLKFRPPFSAYTVLIGALAEAR 190
Query: 386 QLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNM 445
Q + L +++R ++ G ++ + ++++AL R G+ L ++E + S +
Sbjct: 191 QPERAL--ELLRQMQDVGYEVSVPLFTTLVRAL---AREGQMEPALALVDE---VKGSCL 242
Query: 446 KSKIAFR------LSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAAD 499
+ I AG D A +F ++A G D + S++ C AG L +A +
Sbjct: 243 EPDIVLYNVCIDCFGKAGSVDMAWKFFHELKAHGLRPDDVSYTSMVWVLCKAGRLGEAEE 302
Query: 500 CFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKN 559
F +M E E YA + ++ Y S R DA K + +RE P ++ ++
Sbjct: 303 LFGQM-EAERDVPCAYAYNTMIMGYGSAERFDDAYKLLER-LRERGCIPSVVSFNSILTC 360
Query: 560 LLVQRGFKDALSLLCLMKDHGFP 582
L +R +AL+L +MK P
Sbjct: 361 LGKKRKVDEALTLFDVMKKDAKP 383
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 67/342 (19%), Positives = 144/342 (42%), Gaps = 19/342 (5%)
Query: 303 SYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFA 362
+YN M G + D +K+L+ +R +G + + +L ++ V EA+ L++
Sbjct: 318 AYNTMIMGYGSAERFDDAYKLLERLRERGCIPSVVSFNSILTCLGKKRKVDEALTLFD-V 376
Query: 363 MACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAM-LNSVLKALISV 421
M KP+++ ++ + ++ +++ + +R E + + + +N ++ L
Sbjct: 377 MKKDAKPNISTYNIIIDMLCMAGRVNE---AYKIRDEMELAGLFPNLLSVNIMVDRLCKA 433
Query: 422 GRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMW 481
++ E ++I ++ E G +S + L GK D+A + M +G D ++
Sbjct: 434 NQLEEAHRIFESASERGCNPNSVTYCSLIDGLGKKGKIDDAYRLFEKMLDAGHDANPIIY 493
Query: 482 VSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDL-LVNTYCS---KNRAIDACKFV 537
SLI+ + G + +++M+ + G DL L+NTY K ++ + +
Sbjct: 494 TSLIRNFFMHGRKEDGHKIYKEMIRRGGRP------DLTLLNTYMDCVFKAGEVEKGRAI 547
Query: 538 HNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGF---PPFVDPFIKYVSK 594
++ + P +Y LI L ++ ++ M GF + + + K
Sbjct: 548 FEDMKSFGFLPDVRSYSILIHGLTKAGQARETSNIFQAMSQQGFALDARAYNAVVDGLCK 607
Query: 595 SGTSDDAIAFLKGMTSKRF-PSMSVVLCLFAAFFQARRHSEA 635
SG D A L+ M K P+++ + + R EA
Sbjct: 608 SGKVDKAYEVLEEMKVKHVHPTVATYGSIVDGLAKIDRLDEA 649
Score = 48.9 bits (115), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 89/431 (20%), Positives = 162/431 (37%), Gaps = 65/431 (15%)
Query: 256 RQLRDLNVTFSNDL-VKFVVDKL--GDEPKKALIFFRWAEESGFVKHDESSYNAMASVLG 312
R +L F N L V +VD+L ++ ++A F A E G + +Y ++ LG
Sbjct: 408 RDEMELAGLFPNLLSVNIMVDRLCKANQLEEAHRIFESASERG-CNPNSVTYCSLIDGLG 466
Query: 313 REDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVN 372
++ ID +++ ++M G++ ++ F ++ +Y+ + +P +
Sbjct: 467 KKGKIDDAYRLFEKMLDAGHDANPIIYTSLIRNFFMHGRKEDGHKIYKEMIRRGGRPDLT 526
Query: 373 C------CTFLLRKIVVSKQL--DMRLFSKVVRVFRENGNVLTDAMLNSVL-KALISVGR 423
C F ++ + + DM+ F L D S+L L G+
Sbjct: 527 LLNTYMDCVFKAGEVEKGRAIFEDMKSF-----------GFLPDVRSYSILIHGLTKAGQ 575
Query: 424 MGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHM-------------- 469
E + I +AM + GF + + + L +GK D+A E ++ M
Sbjct: 576 ARETSNIFQAMSQQGFALDARAYNAVVDGLCKSGKVDKAYEVLEEMKVKHVHPTVATYGS 635
Query: 470 ---------------------EASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKE 508
++ G ++ ++ SLI G G +D+A ++M+ K+
Sbjct: 636 IVDGLAKIDRLDEAYMLFEEAKSKGIELNVILYSSLIDGFGKVGRIDEAYLILEEMM-KK 694
Query: 509 GTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKD 568
G + Y + L++ K ID ++E P TY LI L + +
Sbjct: 695 GLTPNVYTWNSLMDALV-KTEEIDEALICFQSMKEMKCSPNTYTYSILINGLCRVQKYNK 753
Query: 569 ALSLLCLMKDHGFPPFVDPFIKYVS---KSGTSDDAIA-FLKGMTSKRFPSMSVVLCLFA 624
A M+ G P V + +S K G DA + F + T+ P + L
Sbjct: 754 AFVFWQEMQKQGLIPNVVTYTTMISGLAKVGNITDAYSLFERFKTNGGIPDSASFNALIE 813
Query: 625 AFFQARRHSEA 635
A R EA
Sbjct: 814 GMSNANRPMEA 824
Score = 48.1 bits (113), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 52/241 (21%), Positives = 104/241 (43%), Gaps = 35/241 (14%)
Query: 298 KHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVD 357
K + S+YN + +L ++ +K+ DEM G + + ++ R + N ++EA
Sbjct: 382 KPNISTYNIIIDMLCMAGRVNEAYKIRDEMELAGLFPNLLSVNIMVDRLCKANQLEEAHR 441
Query: 358 LYEFA--MACKNKPSVNCCTFL-----LRKI-----VVSKQLDMR------LFSKVVRVF 399
++E A C N SV C+ + KI + K LD +++ ++R F
Sbjct: 442 IFESASERGC-NPNSVTYCSLIDGLGKKGKIDDAYRLFEKMLDAGHDANPIIYTSLIRNF 500
Query: 400 -----RENGNVLTDAM-----------LNSVLKALISVGRMGECNKILKAMEEGGFIASS 443
+E+G+ + M LN+ + + G + + I + M+ GF+
Sbjct: 501 FMHGRKEDGHKIYKEMIRRGGRPDLTLLNTYMDCVFKAGEVEKGRAIFEDMKSFGFLPDV 560
Query: 444 NMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQK 503
S + L+ AG+ E + M G + + + +++ G C +G +DKA + ++
Sbjct: 561 RSYSILIHGLTKAGQARETSNIFQAMSQQGFALDARAYNAVVDGLCKSGKVDKAYEVLEE 620
Query: 504 M 504
M
Sbjct: 621 M 621
>gi|255580313|ref|XP_002530985.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223529437|gb|EEF31397.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 753
Score = 71.2 bits (173), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 101/464 (21%), Positives = 180/464 (38%), Gaps = 96/464 (20%)
Query: 235 EKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEES 294
EKV I +++ + W ++ +R+L F + LV + V + AL FFRW E +
Sbjct: 77 EKVEDTISRMMANRPWTTRLQNSIRNLVPHFDHSLV-YNVLHAARNSEHALQFFRWVERA 135
Query: 295 GFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKE 354
G K+D ++ + +LGR ++ +L +M KG E + V ++ + + +V+E
Sbjct: 136 GLFKNDRDTHMKIIEILGRASKLNHARCILLDMPKKGVEWDEYMFVVLIESYGKAGIVQE 195
Query: 355 AVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDM--RLFSKV----VRVFRENGNV--- 405
AV ++ + S+ L + I+ + M R+F+K+ ++ R N+
Sbjct: 196 AVKIFNKMNELGVERSIKSYDALFKVILRRGRYMMAKRVFNKMLNDGIQPTRHTYNIMLW 255
Query: 406 -------LTDAM-----------------LNSVLKALISVGRMGECNKILKAMEE----- 436
L AM N+++ +M E K+ M+
Sbjct: 256 GFFLSLRLETAMRFYDDMKNRGISPDVVTYNTMINGFYRFKKMEEAEKLFVEMKGKNIAP 315
Query: 437 ---------GGFIA---------------SSNMK------SKIAFRLSSAGKKDEANEFM 466
G++A S N+K S + L A K EA + +
Sbjct: 316 TVISYTTMIKGYVAVDRVDDGLRLLEEMKSFNIKPNVHTYSTLLPGLCDAWKMTEAKDIL 375
Query: 467 DHMEASGSDVGDK-MWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYC 525
M A D +++ L+ C AGDL A D M+ + AG+ +L+ +C
Sbjct: 376 IEMVARHLAPKDNSIFLRLLSCQCKAGDLRAAEDVLNTMMRLHIPTEAGH-YGVLIENFC 434
Query: 526 SKNRAIDACKFVHNCV-REYDLKPWHT------TYEELIKNL---------------LVQ 563
A K++ + +E L+P T Y +I+ L L++
Sbjct: 435 KAEEYDRAVKYLDKLIEKEIILRPQSTLEIESNAYNPMIQYLCSHGQTGKAEIFFRQLMK 494
Query: 564 RGFKDALS---LLCLMKDHGFPPFVDPFIKYVSKSGTSDDAIAF 604
+G +D L+ L+C G+P K + K G DA A+
Sbjct: 495 KGVQDPLAFNNLICGHAKEGYPDSAFEIFKIMGKRGVPRDADAY 538
>gi|242092012|ref|XP_002436496.1| hypothetical protein SORBIDRAFT_10g003720 [Sorghum bicolor]
gi|241914719|gb|EER87863.1| hypothetical protein SORBIDRAFT_10g003720 [Sorghum bicolor]
Length = 698
Score = 71.2 bits (173), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 94/439 (21%), Positives = 186/439 (42%), Gaps = 18/439 (4%)
Query: 127 VFTHEMVLKVLKNLESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGL 186
V + VL L ++S ARRFF+ +L + + TYN+++R + G +E +
Sbjct: 123 VLAYNAVLLALS--DASLPSARRFFDSMLS-DGVAPNVYTYNILVRALCGRGHRKEALSV 179
Query: 187 VDVMKKKGYGVASHVRNKMTEKFEKEGLESDLEKLKGIFATGSIDNSI---EKVASRICK 243
+ M+ G + N + F + G E+L + G + ++ V + ICK
Sbjct: 180 LRDMRGAGCDPNAVTYNTLVAAFCRAGEVDRAERLVDMMREGGLKPNLVTFNSVVNGICK 239
Query: 244 VVRSD----IWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKH 299
R + ++ + V+ L V++ N LV K+G +AL F G +
Sbjct: 240 AGRMEDARKVFDEMVKEGLAPDGVSY-NTLVGGYC-KVGCS-HEALSVFAEMTRKGIMP- 295
Query: 300 DESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLY 359
D ++ ++ V+ + ++R ++ EMR +G +M T ++ F ++ + +A+
Sbjct: 296 DVVTFTSLIHVMCKAGNLERAVGLVREMRERGLQMNEITFTALIDGFCKKGFLDDALLAV 355
Query: 360 EFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALI 419
C+ +PSV C L+ + ++D ++VR G +++L A
Sbjct: 356 REMRQCRIQPSVVCYNALINGYCMVGRMDEA--RELVREMEAKGVKPDVVTYSTILSAYC 413
Query: 420 SVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDK 479
G ++ + M E G + + S + L + +A+ +M + G +
Sbjct: 414 KNGDTHSAFQLNQQMLENGVLPDAITYSSLIRVLCEEKRLGDAHVLFKNMISLGLQPDEV 473
Query: 480 MWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHN 539
+ SLI GHC G++++A +MV K G +L+N R +A + +
Sbjct: 474 TYTSLIDGHCKEGNVERALSLHDEMV-KAGVLPDVVTYSVLINGLSKSARTKEAQRLLFK 532
Query: 540 CVREYDLKPWHTTYEELIK 558
E + P + Y+ L++
Sbjct: 533 LYHEEPV-PANIKYDALMR 550
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 59/236 (25%), Positives = 99/236 (41%), Gaps = 14/236 (5%)
Query: 412 NSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEA 471
N +++AL G E +L+ M G ++ + + AG+ D A +D M
Sbjct: 161 NILVRALCGRGHRKEALSVLRDMRGAGCDPNAVTYNTLVAAFCRAGEVDRAERLVDMMRE 220
Query: 472 SGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAI 531
G + S++ G C AG ++ A F +MV KEG + G + + LV YC +
Sbjct: 221 GGLKPNLVTFNSVVNGICKAGRMEDARKVFDEMV-KEGLAPDGVSYNTLVGGYCKVGCSH 279
Query: 532 DACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHG-------FPPF 584
+A R+ + P T+ LI + + A+ L+ M++ G F
Sbjct: 280 EALSVFAEMTRK-GIMPDVVTFTSLIHVMCKAGNLERAVGLVREMRERGLQMNEITFTAL 338
Query: 585 VDPFIKYVSKSGTSDDAIAFLKGMTSKRF-PSMSVVLCLFAAFFQARRHSEAQDLL 639
+D F K G DDA+ ++ M R PS+ L + R EA++L+
Sbjct: 339 IDGF----CKKGFLDDALLAVREMRQCRIQPSVVCYNALINGYCMVGRMDEARELV 390
Score = 45.8 bits (107), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 51/218 (23%), Positives = 84/218 (38%), Gaps = 5/218 (2%)
Query: 394 KVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRL 453
++V + RE G NSV+ + GRM + K+ M + G + +
Sbjct: 213 RLVDMMREGGLKPNLVTFNSVVNGICKAGRMEDARKVFDEMVKEGLAPDGVSYNTLVGGY 272
Query: 454 SSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHA 513
G EA M G + SLI C AG+L++A ++M E+ G
Sbjct: 273 CKVGCSHEALSVFAEMTRKGIMPDVVTFTSLIHVMCKAGNLERAVGLVREMRER-GLQMN 331
Query: 514 GYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLL 573
L++ +C K DA V +R+ ++P Y LI + +A L+
Sbjct: 332 EITFTALIDGFCKKGFLDDALLAVRE-MRQCRIQPSVVCYNALINGYCMVGRMDEARELV 390
Query: 574 CLMKDHGFPPFVDPFIKYVS---KSGTSDDAIAFLKGM 608
M+ G P V + +S K+G + A + M
Sbjct: 391 REMEAKGVKPDVVTYSTILSAYCKNGDTHSAFQLNQQM 428
Score = 42.7 bits (99), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 48/220 (21%), Positives = 83/220 (37%), Gaps = 5/220 (2%)
Query: 395 VVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLS 454
V+R R G N+++ A G + +++ M EGG + + + +
Sbjct: 179 VLRDMRGAGCDPNAVTYNTLVAAFCRAGEVDRAERLVDMMREGGLKPNLVTFNSVVNGIC 238
Query: 455 SAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAG 514
AG+ ++A + D M G + +L+ G+C G +A F +M K G
Sbjct: 239 KAGRMEDARKVFDEMVKEGLAPDGVSYNTLVGGYCKVGCSHEALSVFAEMTRK-GIMPDV 297
Query: 515 YAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLC 574
L++ C A V +RE L+ T+ LI + DAL +
Sbjct: 298 VTFTSLIHVMCKAGNLERAVGLVRE-MRERGLQMNEITFTALIDGFCKKGFLDDALLAVR 356
Query: 575 LMKDHGFPPFV---DPFIKYVSKSGTSDDAIAFLKGMTSK 611
M+ P V + I G D+A ++ M +K
Sbjct: 357 EMRQCRIQPSVVCYNALINGYCMVGRMDEARELVREMEAK 396
>gi|449485620|ref|XP_004157226.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g55630-like [Cucumis sativus]
Length = 476
Score = 71.2 bits (173), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 80/385 (20%), Positives = 156/385 (40%), Gaps = 18/385 (4%)
Query: 238 ASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDE---------PKKALIFF 288
A ++ ++++ D G D L +L + S LV V+ + K FF
Sbjct: 79 AEKVIEILKQDGPGFDTFLALDELQLKVSGVLVGEVLKGILKSKSVLNKTQCAKLGYKFF 138
Query: 289 RWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSE 348
W+ +H +SY+ + + + W+VLDEM KGY + T + ++ E
Sbjct: 139 IWSGRIENYRHTVNSYHIIMKIFAECEEFKAMWRVLDEMTEKGYPVTARTFMILICTCGE 198
Query: 349 RNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENG-NVLT 407
+ K V+ + + +P + +L +V+ KQ + + + ++ ++LT
Sbjct: 199 AGLAKRVVERFIKSKTFNFRPYKHSYNAILHGLVIVKQYKLIGWVYDQMLLDDHSPDILT 258
Query: 408 DAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMD 467
N +L + +G++ + +++L M GF + + + + L K A ++
Sbjct: 259 ---YNVLLFSSCKLGKLDQFHRLLDEMARKGFSPDFHTYNILLYVLGKGDKPLAALNLLN 315
Query: 468 HMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSK 527
HM G + +LI G AG+LD A F + G +++ ++
Sbjct: 316 HMREVGFGPNVLHFTTLINGLSRAGNLD-ACKYFFDELGNNGCIPDVVCYTVMITSFTEA 374
Query: 528 NRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPP---F 584
+ A F + + L P TY +I+ + FK+A S+L M+ G P
Sbjct: 375 GQHEKARAFFDEMIMKGQL-PNVFTYNSMIRGFCMVGKFKEAYSMLSEMESRGCRPNFLV 433
Query: 585 VDPFIKYVSKSGTSDDAIAFLKGMT 609
+ Y+ +G +A +K M
Sbjct: 434 YSTLVSYLRNAGKLGEAHKVIKRMV 458
Score = 49.7 bits (117), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 87/374 (23%), Positives = 154/374 (41%), Gaps = 33/374 (8%)
Query: 120 QLELSGVVFTHEMVLKVLK-----NLESSPDEARRFFNWVLEKESERLSSKTYNLMLRIV 174
QL++SGV+ E++ +LK N +FF W E+ R + +Y+++++I
Sbjct: 103 QLKVSGVL-VGEVLKGILKSKSVLNKTQCAKLGYKFFIWSGRIENYRHTVNSYHIIMKIF 161
Query: 175 GVHGLVQEFWGLVDVMKKKGYGVASHVRNKMTEKFEKEGLESDL-EKL--KGIFATGSID 231
+ W ++D M +KGY V + + + GL + E+ F
Sbjct: 162 AECEEFKAMWRVLDEMTEKGYPVTARTFMILICTCGEAGLAKRVVERFIKSKTFNFRPYK 221
Query: 232 NSIEKVASRICKVVRSDIWGDDVERQLRDLNV--TFSNDLVKFVVDKLGDEPKKALIFFR 289
+S + + V + + G ++ L D + + +++ F KLG + F R
Sbjct: 222 HSYNAILHGLVIVKQYKLIGWVYDQMLLDDHSPDILTYNVLLFSSCKLGKLDQ----FHR 277
Query: 290 WAEE---SGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYE---MEMETCVKVL 343
+E GF D +YN + VLG+ D +L+ MR G+ + T + L
Sbjct: 278 LLDEMARKGF-SPDFHTYNILLYVLGKGDKPLAALNLLNHMREVGFGPNVLHFTTLINGL 336
Query: 344 GRFSERNMVKEAVDLYEFAMACKNK--PSVNCCTFLLRKIVVSKQLD-MRLFSKVVRVFR 400
R + K Y F N P V C T ++ + Q + R F + +
Sbjct: 337 SRAGNLDACK-----YFFDELGNNGCIPDVVCYTVMITSFTEAGQHEKARAFFDEMIMKG 391
Query: 401 ENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKD 460
+ NV T NS+++ VG+ E +L ME G + + S + L +AGK
Sbjct: 392 QLPNVFT---YNSMIRGFCMVGKFKEAYSMLSEMESRGCRPNFLVYSTLVSYLRNAGKLG 448
Query: 461 EANEFMDHMEASGS 474
EA++ + M +G
Sbjct: 449 EAHKVIKRMVENGQ 462
>gi|449485308|ref|XP_004157129.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At4g31850, chloroplastic-like [Cucumis sativus]
Length = 1113
Score = 71.2 bits (173), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 74/322 (22%), Positives = 140/322 (43%), Gaps = 13/322 (4%)
Query: 296 FVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEA 355
++ D +Y + L + + VL++MR G+ + + ++ + EA
Sbjct: 152 IIRRDLDTYLTIFKALSIRGGLRQMTTVLNKMRKAGFVLNAYSYNGLIHLLIQSGFCGEA 211
Query: 356 VDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENG---NVLTDAMLN 412
+++Y ++ KPS+ + L+ + + K+ D + +++ + G NV T
Sbjct: 212 LEVYRRMVSEGLKPSLKTYSALM--VALGKKRDSEMVMVLLKEMEDLGLRPNVYT---FT 266
Query: 413 SVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEAS 472
++ L G++ E +I + M++ G + + L +AG+ + A E M+A+
Sbjct: 267 ICIRVLGRAGKIDEAYEIFRRMDDEGCGPDLVTYTVLIDALCNAGQLENAKELFVKMKAN 326
Query: 473 GSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAID 532
G ++++L+ GDLD + + +M E +G +LV+ C K R D
Sbjct: 327 GHKPDQVIYITLLDKFNDFGDLDTFKEFWSQM-EADGYMPDVVTFTILVDVLC-KARDFD 384
Query: 533 ACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFV---DPFI 589
+ +R+ + P TY LI LL +DAL LL M+ G P FI
Sbjct: 385 EAFATFDVMRKQGILPNLHTYNTLICGLLRAGRIEDALKLLDTMESVGVQPTAYTYITFI 444
Query: 590 KYVSKSGTSDDAIAFLKGMTSK 611
Y KSG + A+ + M +K
Sbjct: 445 DYFGKSGETGKAVETFEKMKAK 466
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 70/306 (22%), Positives = 125/306 (40%), Gaps = 6/306 (1%)
Query: 303 SYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFA 362
+YN + L R I+ K+LD M S G + T + + F + +AV+ +E
Sbjct: 404 TYNTLICGLLRAGRIEDALKLLDTMESVGVQPTAYTYITFIDYFGKSGETGKAVETFEKM 463
Query: 363 MACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVG 422
A P++ C L + +L R + RENG N ++K VG
Sbjct: 464 KAKGIVPNIVACNASLYSLAEMGRL--REAKTMFNGLRENGLAPDSVTYNMMMKCYSKVG 521
Query: 423 RMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWV 482
++ E +L M G + + + L AG+ DEA + D M+ +
Sbjct: 522 QVDEAVNLLSEMIRNGCEPDVIVVNSLIDSLYKAGRVDEAWQMFDRMKDMKLSPTVVTYN 581
Query: 483 SLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVR 542
+L+ G G + KA + F+ M+ K+ + + + + L++ +C KN ++ + + +
Sbjct: 582 TLLSGLGKEGRVQKAIELFESMIXKKCSPNT-ISFNTLLDCFC-KNDEVELALKMFSKMT 639
Query: 543 EYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVD--PFIKYVSKSGTSDD 600
D KP TY +I L+ + A +K P V + + K G D
Sbjct: 640 VMDCKPDVLTYNTVIYGLIKENKVNHAFWFFHQLKKSMHPDHVTICTLLPGLVKCGQIGD 699
Query: 601 AIAFLK 606
AI+ +
Sbjct: 700 AISIAR 705
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 107/520 (20%), Positives = 215/520 (41%), Gaps = 24/520 (4%)
Query: 133 VLKVLKNLESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLVDVMKK 192
VL VLK++ + P A +F + E + +++T N ML + VH V++ + + M+K
Sbjct: 92 VLGVLKSM-TDPIRALSYFYSISEFPTVLHTTETCNFMLEFLRVHDKVEDMAAVFEFMQK 150
Query: 193 KGYGVASHVRNKMTEKFEKEGLESDLEKLKGIF----ATGSIDNSIEKVASRICKVVRSD 248
K + + F+ + L ++ + G + N+ I +++S
Sbjct: 151 K---IIRRDLDTYLTIFKALSIRGGLRQMTTVLNKMRKAGFVLNAYS-YNGLIHLLIQSG 206
Query: 249 IWGDDVERQLRDLNVTFSNDLVKF--VVDKLGD--EPKKALIFFRWAEESGFVKHDESSY 304
G+ +E R ++ L + ++ LG + + ++ + E+ G ++ + ++
Sbjct: 207 FCGEALEVYRRMVSEGLKPSLKTYSALMVALGKKRDSEMVMVLLKEMEDLG-LRPNVYTF 265
Query: 305 NAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMA 364
VLGR ID +++ M +G ++ T ++ ++ A +L+ A
Sbjct: 266 TICIRVLGRAGKIDEAYEIFRRMDDEGCGPDLVTYTVLIDALCNAGQLENAKELFVKMKA 325
Query: 365 CKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGR- 423
+KP LL K LD F + +G + D + ++L ++ R
Sbjct: 326 NGHKPDQVIYITLLDKFNDFGDLDT--FKEFWSQMEADG-YMPDVVTFTILVDVLCKARD 382
Query: 424 MGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVS 483
E M + G + + + + + L AG+ ++A + +D ME+ G +++
Sbjct: 383 FDEAFATFDVMRKQGILPNLHTYNTLICGLLRAGRIEDALKLLDTMESVGVQPTAYTYIT 442
Query: 484 LIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVRE 543
I +G+ KA + F+KM K G A + + + R +A K + N +RE
Sbjct: 443 FIDYFGKSGETGKAVETFEKMKAK-GIVPNIVACNASLYSLAEMGRLREA-KTMFNGLRE 500
Query: 544 YDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPP---FVDPFIKYVSKSGTSDD 600
L P TY ++K +A++LL M +G P V+ I + K+G D+
Sbjct: 501 NGLAPDSVTYNMMMKCYSKVGQVDEAVNLLSEMIRNGCEPDVIVVNSLIDSLYKAGRVDE 560
Query: 601 AIAFLKGMTSKRF-PSMSVVLCLFAAFFQARRHSEAQDLL 639
A M + P++ L + + R +A +L
Sbjct: 561 AWQMFDRMKDMKLSPTVVTYNTLLSGLGKEGRVQKAIELF 600
Score = 45.4 bits (106), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 77/387 (19%), Positives = 141/387 (36%), Gaps = 67/387 (17%)
Query: 221 LKGIFATGSIDNSIE-------KVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLV--- 270
L G+ G I ++I +V R+ + D+ G + D + F+ +LV
Sbjct: 688 LPGLVKCGQIGDAISIARDFMYQVRFRVNRSFWEDLMGGTLVEAEMDKAIIFAEELVLNG 747
Query: 271 -----KFVVD------KLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDR 319
F++ K E IF ++ ++ G + +SYN + L ++
Sbjct: 748 ICREDSFLIPLVRVLCKHKRELYAYQIFDKFTKKLG-ISPTLASYNCLIGELLEVHYTEK 806
Query: 320 FWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLR 379
W + +M++ G + T +L + + E +LY+ ++ + KP ++
Sbjct: 807 AWDLFKDMKNVGCAPDAFTFNMLLAVHGKSGKITELFELYKEMISRRCKPDAITYNIVIS 866
Query: 380 KIVVSKQLDMRL---FSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEE 436
+ S LD L + V FR T ++ L VGR+
Sbjct: 867 SLAKSNNLDKALDFFYDLVSSDFRP-----TPRTYGPLIDGLAKVGRL------------ 909
Query: 437 GGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDK 496
+EA + M G ++ LI G+ GD +
Sbjct: 910 -----------------------EEAMRLFEEMSDYGCKPNCAIFNILINGYGKIGDTET 946
Query: 497 AADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEEL 556
A F++MV EG + +LV+ C R +D + N ++ L P Y +
Sbjct: 947 ACQLFKRMV-NEGIRPDLKSYTILVDCLCLAGR-VDEALYYFNELKSTGLDPDFIAYNRI 1004
Query: 557 IKNLLVQRGFKDALSLLCLMKDHGFPP 583
I L + ++AL+L M++ G P
Sbjct: 1005 INGLGKSQRMEEALALYNEMRNRGIVP 1031
>gi|297820862|ref|XP_002878314.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297324152|gb|EFH54573.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 475
Score = 71.2 bits (173), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 90/389 (23%), Positives = 156/389 (40%), Gaps = 22/389 (5%)
Query: 238 ASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVV---------DKLGDEPKKALIFF 288
ASR+ + ++ D G + L +LNV S LV+ V+ D + A FF
Sbjct: 79 ASRVLETLQLDESGFNTNSVLDELNVRVSGLLVREVLVGILRNLSYDNKTRCARLAYRFF 138
Query: 289 RWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSE 348
W+ E +H +SY+ + + W+++DEM G+ T ++ E
Sbjct: 139 VWSGEQDCFRHTVNSYHLLMKIFAECGEYKAMWRLVDEMVQDGFPTTARTFNLLICSCGE 198
Query: 349 RNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENG---NV 405
+ K+AV + + +P + +L ++ KQ +L V E+G +V
Sbjct: 199 AGLAKQAVVQFMKSKTFNYRPFKHSYNAILNSLLGVKQ--YKLIEWVYEQMLEDGFSPDV 256
Query: 406 LTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEF 465
LT N +L +G+M +++ M G + + L K A
Sbjct: 257 LT---YNILLWTNYRLGKMDRFDRLFDEMARDGLSPDFYTYNILLHILGKGNKPLAALTT 313
Query: 466 MDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYC 525
++HM+ G D+ + +LI G AG+L+ +MV K G +++ Y
Sbjct: 314 LNHMKEVGIDLSVLHYTTLIDGLSRAGNLEACKYFLDEMV-KAGCRPDVVCYTVMITGYV 372
Query: 526 SKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGF-PPF 584
A + E L P TY +I+ L + F++A LL M+ G P F
Sbjct: 373 VSGELEKAKEMFKEMTVEGQL-PNVFTYNSMIRGLCMAGEFREACWLLKEMESRGCNPNF 431
Query: 585 V--DPFIKYVSKSGTSDDAIAFLKGMTSK 611
V + Y+ K+G +A ++ M K
Sbjct: 432 VVYSTLVSYLRKAGKLSEARKVIRDMVKK 460
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 81/373 (21%), Positives = 158/373 (42%), Gaps = 27/373 (7%)
Query: 120 QLELSGVVFTHEMVLKVLKNLESSPDE-----ARRFFNWVLEKESERLSSKTYNLMLRIV 174
+ +SG++ E+++ +L+NL A RFF W E++ R + +Y+L+++I
Sbjct: 103 NVRVSGLL-VREVLVGILRNLSYDNKTRCARLAYRFFVWSGEQDCFRHTVNSYHLLMKIF 161
Query: 175 GVHGLVQEFWGLVDVMKKKGYGVASHVRNKMTEKFEKEGL--ESDLEKLKG-IFATGSID 231
G + W LVD M + G+ + N + + GL ++ ++ +K F
Sbjct: 162 AECGEYKAMWRLVDEMVQDGFPTTARTFNLLICSCGEAGLAKQAVVQFMKSKTFNYRPFK 221
Query: 232 NSIEKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVV-----DKLGDEPKKALI 286
+S + + + V + + E+ L D FS D++ + + +LG + +
Sbjct: 222 HSYNAILNSLLGVKQYKLIEWVYEQMLED---GFSPDVLTYNILLWTNYRLGKMDRFDRL 278
Query: 287 FFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRF 346
F A + + D +YN + +LG+ + L+ M+ G ++ + ++
Sbjct: 279 FDEMARDG--LSPDFYTYNILLHILGKGNKPLAALTTLNHMKEVGIDLSVLHYTTLIDGL 336
Query: 347 SERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRE---NG 403
S ++ + + +P V C T ++ VVS +L+ K +F+E G
Sbjct: 337 SRAGNLEACKYFLDEMVKAGCRPDVVCYTVMITGYVVSGELE-----KAKEMFKEMTVEG 391
Query: 404 NVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEAN 463
+ NS+++ L G E +LK ME G + + S + L AGK EA
Sbjct: 392 QLPNVFTYNSMIRGLCMAGEFREACWLLKEMESRGCNPNFVVYSTLVSYLRKAGKLSEAR 451
Query: 464 EFMDHMEASGSDV 476
+ + M G V
Sbjct: 452 KVIRDMVKKGHYV 464
>gi|414872431|tpg|DAA50988.1| TPA: hypothetical protein ZEAMMB73_390723 [Zea mays]
Length = 1627
Score = 71.2 bits (173), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 102/431 (23%), Positives = 180/431 (41%), Gaps = 40/431 (9%)
Query: 232 NSIEKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDK-LGDEPKKALIFFRW 290
+S+ + R ++++ WG D E+ L L + + LV+ V+ +G K + FFRW
Sbjct: 1045 HSVRVLDERFIRILKIFKWGPDAEKALEVLMLRVDHWLVREVMKTDVGVNVK--MQFFRW 1102
Query: 291 AEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGY----EMEMETCVKVLGRF 346
A + +HD S+Y A+ L + WK++ EM E+ V++LG
Sbjct: 1103 AAKRRNYEHDTSTYMALIHCLEVVEQYGEMWKMIQEMVRNPICVVTPTELSDVVRMLG-- 1160
Query: 347 SERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRE---NG 403
MV++A+ ++ K +P ++ ++ Q + KV +++ E G
Sbjct: 1161 -NAKMVRQAITIFYQIKTRKCQPIAQAYNSMIIMLMHEGQ-----YEKVHQLYNEMSTEG 1214
Query: 404 NVLTDAMLNSVL-KALISVGRMGECNKILKAMEEGGFIASSNMKSKIA---FRLSSAGKK 459
+ D + S L A +GR ++L M+E G ++ + + + F+ + A
Sbjct: 1215 HCFPDTVTYSALISAFCKLGRRDSAIQLLNEMKEIGMQPTTKIYTMLIALFFKFNDAHGA 1274
Query: 460 DEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDL 519
E M H + DV + LI+G AG +D+A F +M ++EG ++
Sbjct: 1275 LSLFEEMRH-QYCRPDV--FTYTELIRGLGKAGRIDEAYHFFCEM-QREGCRPDTVFMNN 1330
Query: 520 LVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRG-FKDALSLLCLMKD 578
++N R DA K + P TY +IK L + + S MK+
Sbjct: 1331 MINFLGKAGRLDDAMKLFQE-METLRCIPSVVTYNTIIKALFESKSRASEVPSWFERMKE 1389
Query: 579 HGFPP-------FVDPFIKYVSKSGTSDDAIAFLKGMTSKRFPSMSVVLC-LFAAFFQAR 630
G P +D F K+ + A+ L+ M K FP C L A +A+
Sbjct: 1390 SGISPSSFTYSILIDGFC----KTNRMEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAK 1445
Query: 631 RHSEAQDLLSK 641
R+ A +L +
Sbjct: 1446 RYDLACELFQE 1456
Score = 49.3 bits (116), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 67/324 (20%), Positives = 134/324 (41%), Gaps = 12/324 (3%)
Query: 296 FVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEME---METCVKVLGRFSERNMV 352
+ + D +Y + LG+ ID + EM+ +G + M + LG+ +
Sbjct: 1285 YCRPDVFTYTELIRGLGKAGRIDEAYHFFCEMQREGCRPDTVFMNNMINFLGKAGR---L 1341
Query: 353 KEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLN 412
+A+ L++ + PSV +++ + SK + S R+ +E+G + +
Sbjct: 1342 DDAMKLFQEMETLRCIPSVVTYNTIIKALFESKSRASEVPSWFERM-KESGISPSSFTYS 1400
Query: 413 SVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEAS 472
++ RM + +L+ M+E GF + L A + D A E ++ +
Sbjct: 1401 ILIDGFCKTNRMEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDLACELFQELKEN 1460
Query: 473 GSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAID 532
+++ +IK AG LD A + F +M K G + YA + L++ ++ +D
Sbjct: 1461 CGSSSARVYAVMIKHLGKAGRLDDAINMFDEM-NKLGCAPDVYAYNALMSGL-ARTGMLD 1518
Query: 533 ACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFV---DPFI 589
++E+ P +Y ++ L G A+ +L MK P V + +
Sbjct: 1519 EALSTMRRMQEHGCIPDINSYNIILNGLAKTGGPHRAMEMLSNMKQSTVRPDVVSYNTVL 1578
Query: 590 KYVSKSGTSDDAIAFLKGMTSKRF 613
+S +G ++A +K M + F
Sbjct: 1579 GALSHAGMFEEASKLMKEMNTLGF 1602
>gi|357480939|ref|XP_003610755.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355512090|gb|AES93713.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 596
Score = 71.2 bits (173), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 105/460 (22%), Positives = 188/460 (40%), Gaps = 66/460 (14%)
Query: 216 SDLEKLKGIFATGSIDNSI-----EKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLV 270
S L+ +FA S++ SI EK+++ + + S D V + L SN LV
Sbjct: 123 SILQTKPKLFAKPSLEESIHLEDVEKISTFLKEQRHSS--HDHVVQALDGSGFRVSNSLV 180
Query: 271 KFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEM-RS 329
V+ + G++ A FF WA++ H YN M +LG+ D WK++ EM R
Sbjct: 181 MQVLKRFGNDWVAAYGFFIWAKKQTPYVHSPEVYNLMVDILGKAKEFDLMWKLVKEMKRI 240
Query: 330 KGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIV--VSKQL 387
+GY + ++T KV+ RF++ ++AV+ A K V T L K++ + K
Sbjct: 241 EGY-VCLDTMSKVMRRFAKAQRHEDAVE----AFRGMGKYGVEKDTAALNKLLDALVKGQ 295
Query: 388 DMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKS 447
+ + V+ F+ + L+ N ++ V + K+++ +E GF ++ +
Sbjct: 296 SIEIAHNVLDEFK-SSVPLSSPSFNILINGWCKVRNFEKARKVMEERKEHGF--EPDVFT 352
Query: 448 KIAFRLSSAGKKD--EANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKM- 504
F S KD + +E ++ M +G + L+ G+ AG L KA + +++M
Sbjct: 353 YNNFIESYCHDKDFRKVDEVLEEMRGNGCPPNAVTYTILLLGYGKAGQLSKALEEYERMK 412
Query: 505 ---------------------------------VEKEGTSHAGYAIDLLVNTYCSKNRAI 531
+ K+G + +++T C+ ++
Sbjct: 413 KDGIVPDTPFYSSLMYILGKAGRLKDACEVFDDMPKQGVVRDVVTYNTMISTACAHSKEE 472
Query: 532 DACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDP---- 587
A + + + E KP TY LL K + +L + DH F + P
Sbjct: 473 TALRLLKE-MEETSCKPDLQTYHP----LLKMCCKKKRMKVLKFLLDHMFKHDLCPDRGT 527
Query: 588 ---FIKYVSKSGTSDDAIAFLKGMTSKRFPSMSVVLCLFA 624
++ +S SG +A F + M SK F M + L
Sbjct: 528 YTLLVQSLSNSGKLVEACTFFEEMVSKGFTPMETTVKLLT 567
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 101/483 (20%), Positives = 186/483 (38%), Gaps = 88/483 (18%)
Query: 110 KFSDVNDISKQLELSGVVFTHEMVLKVLKNLESSPDEARRFFNWVLEKESERLSSKTYNL 169
+ S + + + L+ SG ++ +V++VLK + A FF W ++ S + YNL
Sbjct: 157 RHSSHDHVVQALDGSGFRVSNSLVMQVLKRFGNDWVAAYGFFIWAKKQTPYVHSPEVYNL 216
Query: 170 MLRIVGVHGLVQEFWGLVDVMKK-KGYGVASHVRNKMTEKFEKEGLESD-LEKLKGIFAT 227
M+ I+G W LV MK+ +GY V +K+ +F K D +E +G+
Sbjct: 217 MVDILGKAKEFDLMWKLVKEMKRIEGY-VCLDTMSKVMRRFAKAQRHEDAVEAFRGMGKY 275
Query: 228 GSIDNSIEKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIF 287
G +EK + + K++ + + G +E + + DE K +
Sbjct: 276 G-----VEKDTAALNKLLDALVKGQSIE-----------------IAHNVLDEFKSS--- 310
Query: 288 FRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFS 347
V S+N + + + ++ KV++E + G+E ++ F+
Sbjct: 311 ---------VPLSSPSFNILINGWCKVRNFEKARKVMEERKEHGFEPDV---------FT 352
Query: 348 ERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENG---N 404
N ++ C +K D R +V+ R NG N
Sbjct: 353 YNNFIES---------YCHDK-------------------DFRKVDEVLEEMRGNGCPPN 384
Query: 405 VLTDAMLNSVLKALISVGRMGECNKILKA---MEEGGFIASSNMKSKIAFRLSSAGKKDE 461
+T +L L+ G+ G+ +K L+ M++ G + + S + + L AG+ +
Sbjct: 385 AVTYTIL------LLGYGKAGQLSKALEEYERMKKDGIVPDTPFYSSLMYILGKAGRLKD 438
Query: 462 ANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLV 521
A E D M G + ++I C + A ++M E LL
Sbjct: 439 ACEVFDDMPKQGVVRDVVTYNTMISTACAHSKEETALRLLKEMEETSCKPDLQTYHPLLK 498
Query: 522 NTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGF 581
K + KF+ + + ++DL P TY L+++L +A + M GF
Sbjct: 499 MCCKKKRMKV--LKFLLDHMFKHDLCPDRGTYTLLVQSLSNSGKLVEACTFFEEMVSKGF 556
Query: 582 PPF 584
P
Sbjct: 557 TPM 559
>gi|297739257|emb|CBI28908.3| unnamed protein product [Vitis vinifera]
Length = 658
Score = 71.2 bits (173), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 86/415 (20%), Positives = 163/415 (39%), Gaps = 41/415 (9%)
Query: 263 VTFSNDLVKFVV--DKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRF 320
+ S + V FV+ D + +P A FF WA + H Y ++ VL DR
Sbjct: 115 IKLSPNFVAFVLKSDAIRGKPDIAFRFFWWAGKQKNYIHKIECYVSLIDVLSLSSDFDRV 174
Query: 321 WKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRK 380
+ E + KG+ M + ++ F MV+E + ++ +PS+ FLL
Sbjct: 175 RCIFGEFKEKGFLMTVFAANSLIRSFGALGMVEELLWVWRRMKESGIEPSLYTFNFLLNG 234
Query: 381 IVVSKQL-----------------DMRLFSKVVRVFRENGNV------LTDA-------- 409
+V S + D+ ++ +++ + + GN TD
Sbjct: 235 LVNSMFIESAERVFEVMECGKIGPDVVSYNTMIKGYCKAGNTKKAMEKFTDMEKRNLEPD 294
Query: 410 --MLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMD 467
++++A S G C + + MEE G + S + L G+ E + +
Sbjct: 295 KITYLTLIQACYSEGNFDSCLHLYQEMEERGLEIPPHAYSLVIGGLCKDGRTVEGSSVFE 354
Query: 468 HMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSK 527
+M G ++ +LI + G++++A + F++M + EG ++VN C
Sbjct: 355 NMNKKGCKANVAIYTALIDAYGKNGNVNEAINLFERM-KGEGFEPDDVTYGVIVNGLCKS 413
Query: 528 NRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPP---F 584
R +A ++ C ++ ++ Y LI L +A M + G P
Sbjct: 414 GRLDEAVEYFEFC-KDNEVAVNAMFYSSLIDGLGKAGRVDEAEKFFEEMVERGCPQDSYC 472
Query: 585 VDPFIKYVSKSGTSDDAIAFLKGMTSKRF-PSMSVVLCLFAAFFQARRHSEAQDL 638
+ I ++KSG ++A+ K M + ++ L + F+ R+ EA L
Sbjct: 473 YNALIDALAKSGKMEEALVLFKRMEKEGCDQTVYTYTILISGLFKEHRNEEALKL 527
Score = 55.5 bits (132), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 99/470 (21%), Positives = 180/470 (38%), Gaps = 68/470 (14%)
Query: 136 VLKN--LESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLVDVMKKK 193
VLK+ + PD A RFF W ++++ + Y ++ ++ + + K+K
Sbjct: 125 VLKSDAIRGKPDIAFRFFWWAGKQKNYIHKIECYVSLIDVLSLSSDFDRVRCIFGEFKEK 184
Query: 194 GYGVASHVRNKMTEKFEKEGLESDL------EKLKGI---------FATGSIDNSIEKVA 238
G+ + N + F G+ +L K GI G +++ + A
Sbjct: 185 GFLMTVFAANSLIRSFGALGMVEELLWVWRRMKESGIEPSLYTFNFLLNGLVNSMFIESA 244
Query: 239 SRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVK 298
R+ +V+ G DV V++ N ++K K G+ KKA+ F E+ ++
Sbjct: 245 ERVFEVMECGKIGPDV--------VSY-NTMIKGYC-KAGNT-KKAMEKFTDMEKRN-LE 292
Query: 299 HDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDL 358
D+ +Y + E D + EM +G E+ V+G + E +
Sbjct: 293 PDKITYLTLIQACYSEGNFDSCLHLYQEMEERGLEIPPHAYSLVIGGLCKDGRTVEGSSV 352
Query: 359 YEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKAL 418
+E N C + ++ +++ ++ + +NGNV
Sbjct: 353 FE------NMNKKGC------------KANVAIYTALIDAYGKNGNV------------- 381
Query: 419 ISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGD 478
E + + M+ GF I L +G+ DEA E+ + + + V
Sbjct: 382 ------NEAINLFERMKGEGFEPDDVTYGVIVNGLCKSGRLDEAVEYFEFCKDNEVAVNA 435
Query: 479 KMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVH 538
+ SLI G AG +D+A F++MVE+ G Y + L++ + +A
Sbjct: 436 MFYSSLIDGLGKAGRVDEAEKFFEEMVER-GCPQDSYCYNALIDALAKSGKMEEALVLFK 494
Query: 539 NCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPF 588
+E + + TY LI L + ++AL L LM D G P F
Sbjct: 495 RMEKEGCDQTVY-TYTILISGLFKEHRNEEALKLWDLMIDKGITPTTASF 543
Score = 48.1 bits (113), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 53/249 (21%), Positives = 105/249 (42%), Gaps = 14/249 (5%)
Query: 298 KHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVD 357
K + + Y A+ G+ ++ + + M+ +G+E + T ++ + + EAV+
Sbjct: 362 KANVAIYTALIDAYGKNGNVNEAINLFERMKGEGFEPDDVTYGVIVNGLCKSGRLDEAVE 421
Query: 358 LYEFAMACK-NKPSVNCCTF--LLRKIVVSKQLDM--RLFSKVVRVFRENGNVLTDAMLN 412
+EF CK N+ +VN + L+ + + ++D + F ++V E G N
Sbjct: 422 YFEF---CKDNEVAVNAMFYSSLIDGLGKAGRVDEAEKFFEEMV----ERGCPQDSYCYN 474
Query: 413 SVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEAS 472
+++ AL G+M E + K ME+ G + + + L + +EA + D M
Sbjct: 475 ALIDALAKSGKMEEALVLFKRMEKEGCDQTVYTYTILISGLFKEHRNEEALKLWDLMIDK 534
Query: 473 GSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAID 532
G + +L G C++G + +A ++ A + ++N C R
Sbjct: 535 GITPTTASFRALSVGLCLSGKVARACKILDELAPMGVIPET--AFEDMINVLCKAGRTEQ 592
Query: 533 ACKFVHNCV 541
ACK V
Sbjct: 593 ACKLADGIV 601
>gi|255583247|ref|XP_002532388.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223527912|gb|EEF30000.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 676
Score = 71.2 bits (173), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 80/365 (21%), Positives = 159/365 (43%), Gaps = 30/365 (8%)
Query: 241 ICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKK--ALIFFRWAEESGFVK 298
+C+V R D G ++ +++R+ + + +V L + ++ A+ F E G +
Sbjct: 49 LCEVGRVD-EGINIFKKMREDDCYPTVRTYTVIVHALFESGRRMEAINLFSEMRERG-CE 106
Query: 299 HDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMV---KEA 355
+ +Y M + + +E ++ ++LDEM KG + T ++ + + MV +E
Sbjct: 107 PNIHTYTVMINAMCKETKLEEGRRILDEMVEKGLVPSVPTYNALIDGYCKEGMVEAAQEI 166
Query: 356 VDLYEFAMACKNKPSVN--CCTFLLRKIV------VSKQLDMRLFSKVVRVFRENGNVLT 407
+DL N+ + N C F +K V +SK L+ RL VV
Sbjct: 167 LDLMHSNSCNPNERTYNELICGFCRKKNVHRAMALLSKMLESRLTPSVVTY--------- 217
Query: 408 DAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMD 467
NS++ +G + ++L M E G + S L G+ +EAN +
Sbjct: 218 ----NSLIHGQCKIGYLDSAYRLLNLMNENGVVPDQWTYSVFIDTLCKKGRIEEANVLFN 273
Query: 468 HMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSK 527
++ G + ++ +LI G+C AG +D A +M+ ++ ++ + L++ C +
Sbjct: 274 SLKEKGIKANEVIYTALIDGYCKAGKMDDANSLLDRMLTEDCLPNSS-TYNALIDGLCKE 332
Query: 528 NRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDP 587
+ +A + + +++ LK TY LI +L + F A +L M G+ P V
Sbjct: 333 RKVQEALLLMESMIQK-GLKCTVPTYTILIVAMLKEGDFDYAHRILDQMVSSGYQPDVYI 391
Query: 588 FIKYV 592
+ ++
Sbjct: 392 YTAFI 396
Score = 45.1 bits (105), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 85/413 (20%), Positives = 147/413 (35%), Gaps = 48/413 (11%)
Query: 269 LVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMR 328
L V L ++ A F + G + +E SY + L +D + +MR
Sbjct: 8 LGNLVEANLNNDVNSAFSVFNMMPKKG-CRRNEVSYTNLIHGLCEVGRVDEGINIFKKMR 66
Query: 329 SKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLD 388
+ T ++ E EA++L+ +P+++ T ++ + +L+
Sbjct: 67 EDDCYPTVRTYTVIVHALFESGRRMEAINLFSEMRERGCEPNIHTYTVMINAMCKETKLE 126
Query: 389 --MRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEG--------- 437
R+ ++V E G V + N+++ G + +IL M
Sbjct: 127 EGRRILDEMV----EKGLVPSVPTYNALIDGYCKEGMVEAAQEILDLMHSNSCNPNERTY 182
Query: 438 -----GFIASSNMKSKIAF-------RLSSA--------------GKKDEANEFMDHMEA 471
GF N+ +A RL+ + G D A ++ M
Sbjct: 183 NELICGFCRKKNVHRAMALLSKMLESRLTPSVVTYNSLIHGQCKIGYLDSAYRLLNLMNE 242
Query: 472 SGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAI 531
+G + I C G +++A F + EK G L++ YC +
Sbjct: 243 NGVVPDQWTYSVFIDTLCKKGRIEEANVLFNSLKEK-GIKANEVIYTALIDGYCKAGKMD 301
Query: 532 DACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFP---PFVDPF 588
DA + + E D P +TY LI L +R ++AL L+ M G P
Sbjct: 302 DANSLLDRMLTE-DCLPNSSTYNALIDGLCKERKVQEALLLMESMIQKGLKCTVPTYTIL 360
Query: 589 IKYVSKSGTSDDAIAFLKGMTSKRF-PSMSVVLCLFAAFFQARRHSEAQDLLS 640
I + K G D A L M S + P + + AF EA+D++S
Sbjct: 361 IVAMLKEGDFDYAHRILDQMVSSGYQPDVYIYTAFIHAFCTRGNIKEAEDMMS 413
Score = 41.6 bits (96), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 92/492 (18%), Positives = 178/492 (36%), Gaps = 98/492 (19%)
Query: 146 EARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRNKM 205
EA F+ + E+ E + TY +M+ + ++E ++D M +KG + N +
Sbjct: 92 EAINLFSEMRERGCEP-NIHTYTVMINAMCKETKLEEGRRILDEMVEKGLVPSVPTYNAL 150
Query: 206 TEKFEKEGLESDLEKLKGIFATGSIDNSIEKVASRICKVVRSDIWGDDVERQLRDLNVTF 265
+ + KEG+ +++ + + S + + IC R +V R + L+
Sbjct: 151 IDGYCKEGMVEAAQEILDLMHSNSCNPNERTYNELICGFCRKK----NVHRAMALLSKML 206
Query: 266 SNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLD 325
+ L VV +YN++ + +D +++L+
Sbjct: 207 ESRLTPSVV----------------------------TYNSLIHGQCKIGYLDSAYRLLN 238
Query: 326 EMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSK 385
M G + T + ++ ++EA L+ K + T L+ +
Sbjct: 239 LMNENGVVPDQWTYSVFIDTLCKKGRIEEANVLFNSLKEKGIKANEVIYTALIDGYCKAG 298
Query: 386 QLDMRLFSKVVRVFRENGNVLTDAML-----------NSVLKALISVGRMGECNKILKAM 434
++D + N L D ML N+++ L ++ E ++++M
Sbjct: 299 KMD-------------DANSLLDRMLTEDCLPNSSTYNALIDGLCKERKVQEALLLMESM 345
Query: 435 EEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDL 494
+ G + + + + G D A+ +D M +SG ++ + I C G++
Sbjct: 346 IQKGLKCTVPTYTILIVAMLKEGDFDYAHRILDQMVSSGYQPDVYIYTAFIHAFCTRGNI 405
Query: 495 DKAADCFQKMVEKEGTSHAGYAIDLLVNTYCS---KNRAIDACKFVHNCVREYD--LKPW 549
+A D M E+ G L+++ Y N A D K R +D P
Sbjct: 406 KEAEDMMSMMFER-GVMPDALTYTLVIDAYGGLGLLNPAFDVLK------RMFDTGCDPS 458
Query: 550 HTTYEELIKNLLVQR-----------------------------GFKDALSLLCLMKDHG 580
H TY LIK+LL + F+ AL L M +HG
Sbjct: 459 HHTYSCLIKHLLKEELTKKYKNVALCDSIPNVFFADVADVWKMMKFETALELFEKMLEHG 518
Query: 581 FPPFVDPFIKYV 592
P ++ + K +
Sbjct: 519 CSPNINTYAKLI 530
>gi|115479179|ref|NP_001063183.1| Os09g0417500 [Oryza sativa Japonica Group]
gi|50253027|dbj|BAD29277.1| putative fertility restorer homologue A [Oryza sativa Japonica
Group]
gi|113631416|dbj|BAF25097.1| Os09g0417500 [Oryza sativa Japonica Group]
Length = 618
Score = 71.2 bits (173), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 99/465 (21%), Positives = 185/465 (39%), Gaps = 27/465 (5%)
Query: 133 VLKVLKNLESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLVDVMKK 192
VL + + + PDEA F + E + + + +V H ++ W L D M
Sbjct: 111 VLVIALSQMALPDEALSVFGRLRELPALPACNAILD---GLVKAH-MLARVWELFDEMLG 166
Query: 193 KGYGVASHVRNKMTEKFEKEGLESDLEKLKGIFATGSIDNSIEKVASRICKVVRSDIWGD 252
+G + N + +G + ++ ID ++ + IC + D GD
Sbjct: 167 RGMVPSVVTYNTLINACRHQGDVAKAWEVWDQMVARRIDPNVVTYTTMICALCEEDCIGD 226
Query: 253 ------DVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNA 306
+++ N+ N L+ + D K AL+F+ + G V +D +
Sbjct: 227 AEGLFLEMKEAGMRPNLYTYNALMSSHFKR--DNIKHALVFYYDLLKCGLVPND-VIFTT 283
Query: 307 MASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVK---VLGRFSERNMVKEAVDLYEFAM 363
+ L + + I + +M YE+ V + G F +EA+ ++ +
Sbjct: 284 LIDGLCQANRITEAKNIFLDMPR--YEVAPTVPVYNSLIHGAF-RSGYAQEALAFFQEII 340
Query: 364 ACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGR 423
+P C+ ++R + Q M++ ++ + V +++G L A N ++ G
Sbjct: 341 RKGLRPDEFTCSIVVRGLCDGGQ--MQVATRFLEVMQQSGIALNAAAYNVLIDEYCKSGN 398
Query: 424 MGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVS 483
+ E M E G + S + S G+ + A M A G + + +
Sbjct: 399 LDEALVTCTRMSEVGVEPNVVTYSSLIDGHSKNGEMEIAMAIYTEMVAKGVEPNVVTYTA 458
Query: 484 LIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFV--HNCV 541
LI GH GD+D AA QK +E++G + +LV+ C +NR DA +F+ ++
Sbjct: 459 LIHGHAKNGDMD-AAFWLQKEMEEKGIYSNAITVSVLVDGLCRENRVQDAVRFIMEYSGQ 517
Query: 542 REYDLKPW---HTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPP 583
++ + P TY LI L + + +A M+D G P
Sbjct: 518 KKSEKNPSIANSVTYMTLIYGLYIDGQYNEACHFFSCMRDSGMVP 562
>gi|357140802|ref|XP_003571952.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g55630-like [Brachypodium distachyon]
Length = 501
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 83/384 (21%), Positives = 157/384 (40%), Gaps = 16/384 (4%)
Query: 240 RICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFV-------VDKLGDE--PKKALIFFRW 290
RI K++ D G + L ++N+ SN+LV+ V VD + E P+ A FF W
Sbjct: 106 RIVKILLQDGPGFSARQALDEMNLRVSNELVREVLSRIVVSVDSVNRERFPRLAYKFFLW 165
Query: 291 AEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERN 350
A + H YN + V + + W++L+EM G + T ++ +
Sbjct: 166 AGQQEGYHHSTGMYNLVMKVFAQCGEVKAMWRLLEEMTENGLSISARTFHLLICTCGQAG 225
Query: 351 MVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAM 410
+ + V+ + + + +P N +L ++ +Q L V + G+
Sbjct: 226 LRRRLVERFIKSSSFNYRPFRNSFNAILHTLLTIEQYS--LIEWVHQKMLMEGHSPDVLT 283
Query: 411 LNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHME 470
N V++A +G++ + +++L M + G + + + L K A +++M
Sbjct: 284 YNIVMRAKYMLGKLDQFHRLLDEMGKNGLTPDLHTYNILLHVLGKGDKPLAALNLLNYMS 343
Query: 471 ASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRA 530
G + +LI G AG+L+ F +M+ K+G +++ Y +
Sbjct: 344 DVGCVPSVLHFTNLIDGLSRAGNLEACKYFFDEMM-KKGCEPDVVCYTVMITGYVAAAEL 402
Query: 531 IDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPFIK 590
+A K + + L P TY +I+ L + F A S+L M G P +
Sbjct: 403 EEAQKLFDDMLVRGKL-PNVYTYNTMIRGLCIVGEFDKACSMLKDMDLRGCTPNFSVYST 461
Query: 591 YVSK---SGTSDDAIAFLKGMTSK 611
V + +G +A +K M +K
Sbjct: 462 LVCRLRNAGKDAEANNVIKYMANK 485
Score = 60.1 bits (144), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 79/346 (22%), Positives = 149/346 (43%), Gaps = 19/346 (5%)
Query: 139 NLESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVA 198
N E P A +FF W ++E S+ YNL++++ G V+ W L++ M + G ++
Sbjct: 151 NRERFPRLAYKFFLWAGQQEGYHHSTGMYNLVMKVFAQCGEVKAMWRLLEEMTENGLSIS 210
Query: 199 SHVRNKMTEKFEKEGLESDL-EKL--KGIFATGSIDNSIEKVASRICKVVRSDI--WGDD 253
+ + + + GL L E+ F NS + + + + + W
Sbjct: 211 ARTFHLLICTCGQAGLRRRLVERFIKSSSFNYRPFRNSFNAILHTLLTIEQYSLIEW--- 267
Query: 254 VERQLRDLNVTFSNDLVKF-VVDKLGDEPKKALIFFRWAEESG--FVKHDESSYNAMASV 310
V +++ L S D++ + +V + K F R +E G + D +YN + V
Sbjct: 268 VHQKM--LMEGHSPDVLTYNIVMRAKYMLGKLDQFHRLLDEMGKNGLTPDLHTYNILLHV 325
Query: 311 LGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPS 370
LG+ D +L+ M G + ++ S ++ ++ M +P
Sbjct: 326 LGKGDKPLAALNLLNYMSDVGCVPSVLHFTNLIDGLSRAGNLEACKYFFDEMMKKGCEPD 385
Query: 371 VNCCTFLLRKIVVSKQLD--MRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECN 428
V C T ++ V + +L+ +LF ++ V + NV T N++++ L VG +
Sbjct: 386 VVCYTVMITGYVAAAELEEAQKLFDDML-VRGKLPNVYT---YNTMIRGLCIVGEFDKAC 441
Query: 429 KILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGS 474
+LK M+ G + ++ S + RL +AGK EAN + +M G
Sbjct: 442 SMLKDMDLRGCTPNFSVYSTLVCRLRNAGKDAEANNVIKYMANKGQ 487
>gi|440800754|gb|ELR21789.1| pentatricopeptide repeat domain/PPR repeatcontaining protein
[Acanthamoeba castellanii str. Neff]
Length = 559
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 70/301 (23%), Positives = 132/301 (43%), Gaps = 11/301 (3%)
Query: 250 WGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESG-FVKHDESSYNAMA 308
W D E+ LR V +++ V + KLGD F SG V+ + ++YNAM
Sbjct: 156 WEDMREQGLRPNVVVYTS--VIATLGKLGDVAAMERTFAEMQRSSGDGVEPNRTTYNAMV 213
Query: 309 SVLGREDCIDRFWKVLDEMRS-KGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKN 367
G++ +D+ +++ MR+ G ++ T V+ +S V +A++ ++ A
Sbjct: 214 HSYGQQQMMDKMEALVERMRADPGLGLDNFTHSAVVAAWSRAGRVDKALEAFDSIAATGG 273
Query: 368 KPSVNCCTFLLRKIVVSKQLD--MRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMG 425
+PS++ T +L + + + D +R K+ R+ G + A+ N+++ A +
Sbjct: 274 QPSLHAWTAILHMLGTAGRSDEMLRTLDKMKRL----GVKPSTAVYNTIINAFGKARNIH 329
Query: 426 ECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLI 485
KAM G A + + + GK EA +F M+ G SL+
Sbjct: 330 SMMDTFKAMRRDGVAADVKTYNTLIDTWAKTGKAVEAEKFYVLMKREGLQPTMYTIASLM 389
Query: 486 KGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYD 545
+ A +K +M +KEG + +LL++TY + +A K + ++EY
Sbjct: 390 DAYTRADQFEKVLRLISRM-KKEGRAPDNVVFNLLIDTYGRMGKPEEAEKVLCGAMKEYG 448
Query: 546 L 546
+
Sbjct: 449 I 449
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 57/290 (19%), Positives = 122/290 (42%), Gaps = 6/290 (2%)
Query: 297 VKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEM---ETCVKVLGRFSERNMVK 353
V+ S+Y + G+ + R W+ ++MR +G + + + LG+ + ++
Sbjct: 129 VRPGMSTYTILIDAWGKAGDLRRMWQAWEDMREQGLRPNVVVYTSVIATLGKLGDVAAME 188
Query: 354 EAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNS 413
+ + +P+ ++ + +D ++ + V R+ + G L + ++
Sbjct: 189 RTFAEMQRSSGDGVEPNRTTYNAMVHSYGQQQMMD-KMEALVERMRADPGLGLDNFTHSA 247
Query: 414 VLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASG 473
V+ A GR+ + + ++ G S + + I L +AG+ DE +D M+ G
Sbjct: 248 VVAAWSRAGRVDKALEAFDSIAATGGQPSLHAWTAILHMLGTAGRSDEMLRTLDKMKRLG 307
Query: 474 SDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDA 533
++ ++I A ++ D F+ M ++G + + L++T+ +A++A
Sbjct: 308 VKPSTAVYNTIINAFGKARNIHSMMDTFKAM-RRDGVAADVKTYNTLIDTWAKTGKAVEA 366
Query: 534 CKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPP 583
KF RE L+P T L+ F+ L L+ MK G P
Sbjct: 367 EKFYVLMKRE-GLQPTMYTIASLMDAYTRADQFEKVLRLISRMKKEGRAP 415
Score = 40.8 bits (94), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 70/353 (19%), Positives = 138/353 (39%), Gaps = 54/353 (15%)
Query: 166 TYNLMLRIVGVHGLVQEFWGLVDVMKK-KGYGVASHVRNKMTEKFEKEG-LESDLEKLKG 223
TYN M+ G ++ + LV+ M+ G G+ + + + + + G ++ LE
Sbjct: 208 TYNAMVHSYGQQQMMDKMEALVERMRADPGLGLDNFTHSAVVAAWSRAGRVDKALEAFDS 267
Query: 224 IFATGSID--NSIEKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEP 281
I ATG ++ + + RSD LR L+ + +LG +P
Sbjct: 268 IAATGGQPSLHAWTAILHMLGTAGRSD-------EMLRTLDK----------MKRLGVKP 310
Query: 282 KKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVK 341
A+ YN + + G+ I MR G +++T
Sbjct: 311 STAV------------------YNTIINAFGKARNIHSMMDTFKAMRRDGVAADVKTYNT 352
Query: 342 VLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLD--MRLFSKVVRVF 399
++ +++ EA Y +P++ L+ + Q + +RL S++ +
Sbjct: 353 LIDTWAKTGKAVEAEKFYVLMKREGLQPTMYTIASLMDAYTRADQFEKVLRLISRMKKEG 412
Query: 400 RENGNVLTDAMLNSVLKALISVGRMG---ECNKIL-KAMEEGGFIASSNMKSKIAFRLSS 455
R NV+ + ++++ GRMG E K+L AM+E G +N + + +
Sbjct: 413 RAPDNVVFNLLIDTY-------GRMGKPEEAEKVLCGAMKEYGIALETNNFTSVIEAWAR 465
Query: 456 AGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCV-AGDLDKAADCFQKMVEK 507
G D+A E++ M + D ++ + C+ A D+ + M+E+
Sbjct: 466 NGNLDKAEEWLHRMNTDYATKPDIKTLTTLLSFCIPAADVKRGRRVIH-MIEQ 517
>gi|218197600|gb|EEC80027.1| hypothetical protein OsI_21710 [Oryza sativa Indica Group]
Length = 694
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 113/537 (21%), Positives = 225/537 (41%), Gaps = 46/537 (8%)
Query: 141 ESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASH 200
++S ARRF + +L + + TYN+++R + G ++E G+V M+ G +
Sbjct: 130 DASLPSARRFLSSML-RHGVAPNVYTYNILVRALCARGRLEEAVGVVGDMRGAGCAPNAV 188
Query: 201 VRNKMTEKFEKEGLESDLEKLKGIF-ATGSIDNSI---EKVASRICKVVRSD----IWGD 252
N + F + G E++ + G+ ++ + + +CK R + ++ +
Sbjct: 189 TYNTLVAAFCRAGELDGAERVVSLMREEGNAKPNLVTFNSMVNGLCKAGRMEGARKVFDE 248
Query: 253 DVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLG 312
V L V+++ L + K+G ++L F + G V D ++ ++
Sbjct: 249 MVREGLAPDVVSYNTLLSGYC--KVGCL-HESLAVFSEMTQRGLVP-DVVTFTSLIHATC 304
Query: 313 REDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVN 372
+ +++ ++ +MR +G M T ++ F ++ + +A+ E C +PSV
Sbjct: 305 KAGNLEQAVALVAQMRERGLRMNEVTFTALIDGFCKKGFLDDALLAVEEMRKCGIQPSVV 364
Query: 373 CCTFLLRKIVVSKQLDM-RLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKIL 431
C L+ ++D+ R + + R +V+T ++++ VG + ++
Sbjct: 365 CYNALINGYCKLGRMDLARELIREMEAKRVKPDVVT---YSTIISGYCKVGNLDSAFQLN 421
Query: 432 KAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVA 491
+ M + G + + S + L + ++A E ++M G + + +LI GHC
Sbjct: 422 QKMLKKGVLPDAITYSSLIRGLCEEKRLNDACELFENMLQLGVQPDEFTYTTLIDGHCKE 481
Query: 492 GDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHT 551
G+++KA +M+ K G +L+N R +A + + E D P +
Sbjct: 482 GNVEKALSLHDEMIRK-GVLPDVVTYSVLINGLSKSARTKEAHRLLFKLYHE-DPVPDNI 539
Query: 552 TYEELIKNLLVQRG-FKDALSLL---C---LMK--DHGFPPFVDP-----------FIKY 591
Y+ L+ L + FK ++LL C LMK D + +D I
Sbjct: 540 KYDALM--LCCSKAEFKSVVALLKGFCMKGLMKEADKVYQSMLDRNWKLDGSVYSILIHG 597
Query: 592 VSKSGTSDDAIAFLKGMTSKRF-PSMSVVLCLFAAFFQARRHSEA----QDLLSKCP 643
+ G A++F K M F P+ + + L F+ EA QDLL+ CP
Sbjct: 598 HCRGGNVRKALSFHKQMLRSGFSPNSTSTISLVRGLFEEGMVVEADNAIQDLLTCCP 654
Score = 47.4 bits (111), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 49/203 (24%), Positives = 79/203 (38%), Gaps = 5/203 (2%)
Query: 412 NSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEA 471
N+VL AL S + + L +M G + + + L + G+ +EA + M
Sbjct: 122 NAVLLAL-SDASLPSARRFLSSMLRHGVAPNVYTYNILVRALCARGRLEEAVGVVGDMRG 180
Query: 472 SGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAI 531
+G + +L+ C AG+LD A M E+ + +VN C R
Sbjct: 181 AGCAPNAVTYNTLVAAFCRAGELDGAERVVSLMREEGNAKPNLVTFNSMVNGLCKAGRME 240
Query: 532 DACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPF--- 588
A K VRE L P +Y L+ ++L++ M G P V F
Sbjct: 241 GARKVFDEMVRE-GLAPDVVSYNTLLSGYCKVGCLHESLAVFSEMTQRGLVPDVVTFTSL 299
Query: 589 IKYVSKSGTSDDAIAFLKGMTSK 611
I K+G + A+A + M +
Sbjct: 300 IHATCKAGNLEQAVALVAQMRER 322
>gi|302783901|ref|XP_002973723.1| hypothetical protein SELMODRAFT_99426 [Selaginella moellendorffii]
gi|300158761|gb|EFJ25383.1| hypothetical protein SELMODRAFT_99426 [Selaginella moellendorffii]
Length = 581
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 96/442 (21%), Positives = 177/442 (40%), Gaps = 37/442 (8%)
Query: 211 KEGLESDLEK----LKGIFATGSIDNSIEKVASRICKVVRSDIWGDDVERQLRDLNVTFS 266
++G E D+ + G+ TG + ++E V K V D+ T++
Sbjct: 3 EKGFEPDVVTYSTIISGLCKTGKVTEALEMVEEMTEKGVNPDV-------------ATYT 49
Query: 267 NDLVKFVVDKL---GDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKV 323
+VD+L G + +F + E + +YNA+ + L +++ I+R +K+
Sbjct: 50 -----IIVDRLCRAGKVDEADELFHKMIERG--CSANTVAYNALINGLCKDENIERAYKL 102
Query: 324 LDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVV 383
L+EM SKGYE + T +L V EA ++ + P V LL +
Sbjct: 103 LEEMASKGYEPDNITYNTILSGLCRMGKVSEAKQFFDSMPSRGYSPDVVAYNGLLDALYK 162
Query: 384 SKQLDMR--LFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIA 441
++ LF + R+ L N+++ V + E K+ K + G++
Sbjct: 163 EGKVAEAWGLFKTMDMADRKVAPDLI--TYNTLIDGFCRVEKTDEAMKLFKDVIAKGYMP 220
Query: 442 SSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCF 501
+ + I L+ DEA E M SG + ++ GHC G++ + + +
Sbjct: 221 DTVTYNSILLGLARKSNMDEAEEMFKKMVDSGCAPNGATYSIVLSGHCRVGNMARCLELY 280
Query: 502 QKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLL 561
++M EK + + +++ C + DA K + + + P TY L+ L
Sbjct: 281 EEMTEKRFSPDV-LLCNAVIDMLCKAKKVDDAHKVLEE-MSKIGAVPDVVTYNILLDGLC 338
Query: 562 VQRGFKDALSLLCLMKDHGFPPFVDPF---IKYVSKSGTSDDA-IAFLKGMTSKRFPSMS 617
A L M D+G P + + + + K+ DA + F + + K P +
Sbjct: 339 KTNLVDKAHELFSTMVDNGCAPDIVSYSVVLNGLCKTNKVHDARVLFDRMIERKLVPDVV 398
Query: 618 VVLCLFAAFFQARRHSEAQDLL 639
L +A + EA+DLL
Sbjct: 399 TFNILMDGLCKAGKLDEAKDLL 420
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 61/245 (24%), Positives = 98/245 (40%), Gaps = 16/245 (6%)
Query: 434 MEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGD 493
M E GF S I L GK EA E ++ M G + + ++ C AG
Sbjct: 1 MAEKGFEPDVVTYSTIISGLCKTGKVTEALEMVEEMTEKGVNPDVATYTIIVDRLCRAGK 60
Query: 494 LDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTY 553
+D+A + F KM+E+ G S A + L+N C A K + + +P + TY
Sbjct: 61 VDEADELFHKMIER-GCSANTVAYNALINGLCKDENIERAYKLLEEMASK-GYEPDNITY 118
Query: 554 EELIKNLLVQRGFKDALSLLCLMKDHGFPPFV---DPFIKYVSKSGTSDDAIAFLKGM-- 608
++ L +A M G+ P V + + + K G +A K M
Sbjct: 119 NTILSGLCRMGKVSEAKQFFDSMPSRGYSPDVVAYNGLLDALYKEGKVAEAWGLFKTMDM 178
Query: 609 -TSKRFPSMSVVLCLFAAFFQARRHSEA----QDLLSK--CPRYVRNHADVLNLLYSKKS 661
K P + L F + + EA +D+++K P V ++ +L L ++KS
Sbjct: 179 ADRKVAPDLITYNTLIDGFCRVEKTDEAMKLFKDVIAKGYMPDTVTYNSILLGL--ARKS 236
Query: 662 GGDSA 666
D A
Sbjct: 237 NMDEA 241
Score = 43.1 bits (100), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 106/484 (21%), Positives = 179/484 (36%), Gaps = 50/484 (10%)
Query: 166 TYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRNKMTEKFEKEGLESDLEKLKGIF 225
TYN +L + G V E D M +GY N + + KEG + + G+F
Sbjct: 117 TYNTILSGLCRMGKVSEAKQFFDSMPSRGYSPDVVAYNGLLDALYKEG---KVAEAWGLF 173
Query: 226 ATGSIDNSIEKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKAL 285
T +D + KVA + +T++ + F + DE A+
Sbjct: 174 KT--MDMADRKVAPDL---------------------ITYNTLIDGFCRVEKTDE---AM 207
Query: 286 IFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGR 345
F+ G++ D +YN++ L R+ +D ++ +M G T VL
Sbjct: 208 KLFKDVIAKGYMP-DTVTYNSILLGLARKSNMDEAEEMFKKMVDSGCAPNGATYSIVLSG 266
Query: 346 FSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNV 405
+ ++LYE + P V C ++ + +K++D KV+ + G V
Sbjct: 267 HCRVGNMARCLELYEEMTEKRFSPDVLLCNAVIDMLCKAKKVDDA--HKVLEEMSKIGAV 324
Query: 406 LTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEF 465
N +L L + + +++ M + G S + L K +A
Sbjct: 325 PDVVTYNILLDGLCKTNLVDKAHELFSTMVDNGCAPDIVSYSVVLNGLCKTNKVHDARVL 384
Query: 466 MDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYC 525
D M + L+ G C AG LD+A D M E G L++ C
Sbjct: 385 FDRMIERKLVPDVVTFNILMDGLCKAGKLDEAKDLLDVMSE-HNVLPDGVTCTTLMHGLC 443
Query: 526 SKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQ---RGFKDALSLL---CLMKDH 579
R +A + V + T + L N+++ R K A +LL ++K
Sbjct: 444 RDKRTDEAVRLFQYMVEK------GTVADVLPHNIVLAGLCREGKLAQALLFFKSMVKSD 497
Query: 580 G-FPPFVDPFIKYVS---KSGTSDDAIAFLKGMT-SKRFPSMSVVLCLFAAFFQARRHSE 634
G F P V + V+ ++G D A+ + + MT S P L + RH +
Sbjct: 498 GEFSPDVVTYTTLVNALIEAGRVDQAVDYFQQMTGSGCAPDYVAYNTLMNGLRKQGRHIQ 557
Query: 635 AQDL 638
A L
Sbjct: 558 ADRL 561
>gi|147780655|emb|CAN66818.1| hypothetical protein VITISV_004776 [Vitis vinifera]
Length = 1037
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 89/344 (25%), Positives = 144/344 (41%), Gaps = 36/344 (10%)
Query: 236 KVASRICKVV---RSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAE 292
++ SRIC++V R + + LN FS+D+V V+ L P +L FF++
Sbjct: 42 ELVSRICRLVLLRRCN--------AISKLNFVFSDDIVDAVLRNLRLNPTASLGFFQFVS 93
Query: 293 ESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMV 352
+ + + SY + +L R ++ DE R+ ++ ++ C +F +R V
Sbjct: 94 KQQNFRPNVKSYCKLVHILSR-------GRMYDETRAYLNQL-VDLC-----KFKDRGNV 140
Query: 353 --KEAVDLY-EFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDA 409
E V +Y EFA + P+V ++ K+ V K L V + G + +
Sbjct: 141 IWDELVGVYREFAFS----PTV---FDMILKVYVEKGLTKNALY-VFDNMGKCGRIPSLR 192
Query: 410 MLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHM 469
NS+L L+ G + + + M G + M S + GK DEA F+ M
Sbjct: 193 SCNSLLNNLVKNGETHTAHYVYQQMIRVGIVPDVFMVSIMVNAFCKDGKVDEAAGFVKKM 252
Query: 470 EASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNR 529
E G + + SLI G+ GD++ A + M EK G S LL+ YC + +
Sbjct: 253 ENLGVEPNIVTYHSLINGYVSLGDVEAAKGVLKFMSEK-GVSRNVVTYTLLIKGYCKQCK 311
Query: 530 AIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLL 573
+A K + E L P Y LI DA+ LL
Sbjct: 312 MDEAEKVLRGMQEEAALVPDERAYGVLIDGYCRTGKIDDAVRLL 355
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 66/258 (25%), Positives = 105/258 (40%), Gaps = 23/258 (8%)
Query: 388 DMRLFSKVVRVFRENG---NVLTDAMLNSVLKALISVGRMGECNKILKAM-EEGGFIASS 443
D+ V++ E G NV+T +L +K +M E K+L+ M EE +
Sbjct: 276 DVEAAKGVLKFMSEKGVSRNVVTYTLL---IKGYCKQCKMDEAEKVLRGMQEEAALVPDE 332
Query: 444 NMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQK 503
+ GK D+A +D M G + SLI G+C G++ +A +
Sbjct: 333 RAYGVLIDGYCRTGKIDDAVRLLDEMLRLGLKTNLFICNSLINGYCKRGEIHEAEGVITR 392
Query: 504 MVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQ 563
MV+ + Y+ + L++ YC + +A ++E ++P TY L+K L
Sbjct: 393 MVDWNLKPDS-YSYNTLLDGYCREGHTSEAFNLCDKMLQE-GIEPTVLTYNTLLKGLCRV 450
Query: 564 RGFKDALSLLCLMKDHGFPP-------FVDPFIKYVSKSGTSD---DAIAFLKGMTSKR- 612
F DAL + LM G P +D K + G S D +A +G T R
Sbjct: 451 GAFDDALQIWHLMMKXGVAPDEVGYSTLLDGLFKMENFEGASTLWKDILA--RGFTKSRI 508
Query: 613 -FPSMSVVLCLFAAFFQA 629
F +M LC +A
Sbjct: 509 TFNTMISGLCKMGKMVEA 526
Score = 60.1 bits (144), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 84/368 (22%), Positives = 139/368 (37%), Gaps = 13/368 (3%)
Query: 279 DEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMET 338
DE +K L R +E + DE +Y + R ID ++LDEM G + +
Sbjct: 313 DEAEKVL---RGMQEEAALVPDERAYGVLIDGYCRTGKIDDAVRLLDEMLRLGLKTNLFI 369
Query: 339 CVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRV 398
C ++ + +R + EA + + KP LL F+ ++
Sbjct: 370 CNSLINGYCKRGEIHEAEGVITRMVDWNLKPDSYSYNTLLDGYCREGHTS-EAFNLCDKM 428
Query: 399 FRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGK 458
+E G T N++LK L VG + +I M + G S + L
Sbjct: 429 LQE-GIEPTVLTYNTLLKGLCRVGAFDDALQIWHLMMKXGVAPDEVGYSTLLDGLFKMEN 487
Query: 459 KDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAID 518
+ A+ + A G + ++I G C G + +A + F KM + G S G
Sbjct: 488 FEGASTLWKDILARGFTKSRITFNTMISGLCKMGKMVEAEEIFDKM-KDLGCSPDGITYR 546
Query: 519 LLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKD 578
L++ YC + A K V + + P Y LI L R + LL M
Sbjct: 547 TLIDGYCKASNVGQAFK-VKGAMEREXISPSIEMYNSLISGLFKSRRLVEXTDLLTEMGI 605
Query: 579 HGFPPFVDPFIKYVS---KSGTSDDAIAFLKGMTSKRFPSMSVVLC--LFAAFFQARRHS 633
G P + + + K G D A + MT S ++++C + + ++ R
Sbjct: 606 RGLTPNIVTYGALIDGWCKEGMLDKAFSSYFEMTENGL-SANIIICSTMVSGLYRLGRID 664
Query: 634 EAQDLLSK 641
EA L+ K
Sbjct: 665 EANLLMQK 672
Score = 48.9 bits (115), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 64/287 (22%), Positives = 112/287 (39%), Gaps = 25/287 (8%)
Query: 303 SYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKV------LGRFSERNMVKEAV 356
+Y A+ +E +D+ + EM G + C + LGR E N++ + +
Sbjct: 614 TYGALIDGWCKEGMLDKAFSSYFEMTENGLSANIIICSTMVSGLYRLGRIDEANLLMQKM 673
Query: 357 DLYEFAMACKNKPSVNCCTFL---LRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNS 413
+ F P C FL +R + K D + + F N++ N
Sbjct: 674 VDHGFF------PDHEC--FLKSDIRYAAIQKIADS--LDESCKTFLLPNNIV----YNI 719
Query: 414 VLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASG 473
+ L G++ + + + GF+ + + S+AG DEA D M G
Sbjct: 720 AIAGLCKTGKVDDARRFFSMLSLKGFVPDNFTYCTLIHGYSAAGNVDEAFRLRDEMLRRG 779
Query: 474 SDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDA 533
+ +LI G C + ++D+A F K+ +K G + L++ YC K +DA
Sbjct: 780 LVPNIVTYNALINGLCKSENVDRAQRLFHKLHQK-GLFPNVVTYNTLIDGYC-KIGNMDA 837
Query: 534 CKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHG 580
+ + + E + P TY LI L + ++ LL M G
Sbjct: 838 AFKLKDKMIEEGISPSVVTYSALINGLCKHGDIERSMKLLNQMIKAG 884
>gi|218196467|gb|EEC78894.1| hypothetical protein OsI_19266 [Oryza sativa Indica Group]
gi|222630938|gb|EEE63070.1| hypothetical protein OsJ_17878 [Oryza sativa Japonica Group]
Length = 939
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 68/292 (23%), Positives = 124/292 (42%), Gaps = 18/292 (6%)
Query: 303 SYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFA 362
+Y A+ + +E + + EM + G + C ++ F + V EA + +
Sbjct: 606 TYGALIAGWCKEGNLHEACNLYFEMVNNGMNPNVFICSALMSCFYKEGKVDEANLVLQKL 665
Query: 363 MACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVG 422
+ P + T + KI S VV + + M N ++ L G
Sbjct: 666 VNIDMIPGCSISTIEIDKI-----------SHVVDTIADGNPHSANVMWNVIIFGLCKSG 714
Query: 423 RMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWV 482
R+ + + +++ F+ + S + +++G DEA D M ++G +
Sbjct: 715 RIADAKSLFESLRNKRFLPDNFTYSSLIHGCAASGSIDEAFSLRDVMLSAGLTPNIITYN 774
Query: 483 SLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVR 542
SLI G C +G L +A + F K+ + +G S G + L++ YC + + +A K V
Sbjct: 775 SLIYGLCKSGKLSRAVNLFNKL-QSKGISPNGITYNTLIDEYCKEGKTTEAFKLKQKMVE 833
Query: 543 EYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDP-FIKYVS 593
E ++P TY LI L Q ++A+ LL M ++ VDP +I Y +
Sbjct: 834 E-GIQPTVITYSILIYGLCTQGYMEEAIKLLDQMIENN----VDPNYITYCT 880
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 52/238 (21%), Positives = 102/238 (42%), Gaps = 5/238 (2%)
Query: 347 SERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVL 406
++ + A+++++ +PS+ C LL K+V S D + + V R G VL
Sbjct: 159 ADAGQLSSALNVFDGMGKVGCRPSLRSCNRLLNKLVQSG--DPGMAAMVYGQMRIAG-VL 215
Query: 407 TDAMLNSVL-KALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEF 465
D +++ KA GR+ + + ++ ME G + + G ++A
Sbjct: 216 PDEFTVAIMAKAYCRDGRVAQAVEFVEEMEGMGLEVNLVAYHAVMDCYCGMGWTEDARRI 275
Query: 466 MDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYC 525
++ ++ G + L+KG+C G +++A ++M E A +++N YC
Sbjct: 276 LESLQRKGLSPNVVTYTLLVKGYCKDGRMEEAERVVKEMKETGDIVVDEVAYGMMINGYC 335
Query: 526 SKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPP 583
+ R DA + V N +R+ + Y +I L ++ +L M+D G P
Sbjct: 336 QRGRMDDATR-VRNEMRDAGIHVNLFVYNTMINGLCKLGRMEEVQKVLQEMEDVGMRP 392
>gi|356498649|ref|XP_003518162.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g06400, mitochondrial-like [Glycine max]
Length = 1034
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 79/372 (21%), Positives = 158/372 (42%), Gaps = 39/372 (10%)
Query: 231 DNSIEKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRW 290
+ + +V S I ++VR + VE +L +L+ ++++ V+ + P+ AL F W
Sbjct: 120 EKDVSRVVSEITEIVRVENDSSSVEERLENLSYGLNSEVFHMVLKRCFKVPQLALRVFNW 179
Query: 291 AEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERN 350
+ H +YN M + K+++EM G + ++ T ++ + +
Sbjct: 180 LKLKDGFSHTTRTYNTMLHIAREAKEFGLVKKLVEEMDECGIQKDVNTWTIIINHYGKAR 239
Query: 351 MVKEAVDLYEFAMACKNKP------SVNC--CTFLLRKI-------VVSKQ--LDMRLFS 393
+ EA+ +E C +P ++ C C+ R I +V K LD+RL+
Sbjct: 240 KISEALLAFENMKRCGCEPDAVSYGAIICSLCSAGKRDIAMEFYNEMVRKDMVLDVRLYK 299
Query: 394 KVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRL 453
V+ +G++ ++L + +I + M E + +KS
Sbjct: 300 MVMNCMARSGDIAAVSLLGN---DMIRLSVMPE-----------KCVHGCMLKS-----F 340
Query: 454 SSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHA 513
+G +EA E + +++ D+ + + +L++G C AG + A + M ++
Sbjct: 341 CISGSIEEALELIRELKSKDLDLEPENYETLVRGLCKAGRITDALEIVDIMKRRDMVD-- 398
Query: 514 GYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLL 573
G +++N Y +N +D V C++E P +TY EL+ +L +++A L
Sbjct: 399 GRVHGIIINGYLGRN-DVDRALEVFQCMKESGCVPTISTYTELMLHLFRLDRYEEACMLY 457
Query: 574 CLMKDHGFPPFV 585
M G P V
Sbjct: 458 DEMLGKGIKPDV 469
Score = 48.5 bits (114), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 30/141 (21%), Positives = 64/141 (45%)
Query: 74 DPKNPNFRNPMICSYSSEPAMEQKESDFTVVSDIFYKFSDVNDISKQLELSGVVFTHEMV 133
D K + + CS + D + I +D + I ++LE S + F+ E+V
Sbjct: 591 DAKVDQSKTEIDCSLIHPKLKNYSKQDVHEIRRILSSSTDWSLIQEKLEKSTIQFSPELV 650
Query: 134 LKVLKNLESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLVDVMKKK 193
+++L++ +FF+W+ ++ R ++++YN+ ++I G + L M++
Sbjct: 651 MEILQSCNMHGSSVLKFFSWIGKQTGYRHTAESYNIAIKIAGCGKDFKHMRSLFFEMRRN 710
Query: 194 GYGVASHVRNKMTEKFEKEGL 214
Y + S M + + GL
Sbjct: 711 SYPITSETWTIMIMVYGRTGL 731
Score = 47.8 bits (112), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 74/364 (20%), Positives = 142/364 (39%), Gaps = 18/364 (4%)
Query: 254 VERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGR 313
++ +L + FS +LV ++ L FF W + +H SYN + G
Sbjct: 634 IQEKLEKSTIQFSPELVMEILQSCNMHGSSVLKFFSWIGKQTGYRHTAESYNIAIKIAGC 693
Query: 314 EDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNC 373
+ EMR Y + ET ++ + + + A++ ++ A PS +
Sbjct: 694 GKDFKHMRSLFFEMRRNSYPITSETWTIMIMVYGRTGLTEMAMNCFKEMKADDYVPSRST 753
Query: 374 CTFLLRKIVVSKQLDMRLFSKVVRVFRE---NGNVLTDAMLNSVLKALISVGRMGECNKI 430
+L+ + K R ++++ E G V ++ + L L VGR+ + +
Sbjct: 754 YKYLIIALCGRKG---RKVDDALKIYGEMISAGYVPDKELIETYLGCLCEVGRVLDARRC 810
Query: 431 LKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCV 490
+++ G+ + S L AGK +EA + + + + S++ G
Sbjct: 811 TDSLQNFGYTVPLSY-SLFIRALCRAGKVEEALALHEEVGEEKFIIDQLTFGSIVHGLLR 869
Query: 491 AGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKN--RAIDAC-KFVHNCVREYDLK 547
G L++A M + T L+V+ + K +AI+ + +H+ +
Sbjct: 870 KGRLEEALAKVDVMKQNGITPTIHVFTSLIVHFFKEKQVEKAIETFEEMLHS-----GYE 924
Query: 548 PWHTTYEELIKNLLVQRGFKDALSLLCLMKDHG-FPPF--VDPFIKYVSKSGTSDDAIAF 604
P TY LI+ + DA + MK G FP F F+ + K G S++ +
Sbjct: 925 PTIVTYSALIRGYMNVGRPIDAWDIFYRMKLKGPFPDFKTYSMFLTCLCKVGKSEEGMRL 984
Query: 605 LKGM 608
+ M
Sbjct: 985 ISEM 988
>gi|255660864|gb|ACU25601.1| pentatricopeptide repeat-containing protein [Verbena perennis]
Length = 484
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 86/391 (21%), Positives = 162/391 (41%), Gaps = 49/391 (12%)
Query: 258 LRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCI 317
+R+L +F ++LV V+ + AL FFRW E S +H+ ++ + +LGR +
Sbjct: 3 IRNLVPSFDHELVYNVLHS-SKTSEHALQFFRWVERSNLFEHNRETHLKIIEILGRASKL 61
Query: 318 DRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFL 377
+ +L +M KG E + + V ++ + + +V+E+V
Sbjct: 62 NHARCILLDMPKKGLEWDEDMWVMMIDSYGKEGIVQESV--------------------- 100
Query: 378 LRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEG 437
++F K+ E G T N++ K ++ GR + M
Sbjct: 101 ------------KMFQKM----EELGVERTIKSYNALFKVILRRGRYMMAKRYFNKMLSE 144
Query: 438 GFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKA 497
G + + + + + +GK + AN F + M++ + ++I G+ +++A
Sbjct: 145 GIEPTRHTFNVMIWGFFLSGKVETANRFFEDMKSREISPDVVTYNTMINGYYRVKKMEEA 204
Query: 498 ADCFQKMVEKEGTSHAGYAIDL--LVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEE 555
F VE +G + + L+ Y S ++ DA + V ++ + +KP TY
Sbjct: 205 EKYF---VEMKGRNIEPTVVTYTTLIKGYVSVDQVDDALRLVEE-MKGFGIKPNAITYST 260
Query: 556 LIKNLLVQRGFKDALSLLCLMKDHGFPPFVDP-FIKYVS---KSGTSDDAIAFLKGMTSK 611
L+ L +A +L M D P + F++ +S KSG D A+ LK M
Sbjct: 261 LLPGLCNAEKMSEARVILKEMMDKYLAPTDNSIFLRLISSHCKSGNLDAAVDVLKAMIRL 320
Query: 612 RFPSMSVVL-CLFAAFFQARRHSEAQDLLSK 641
P+ + L F +A ++ +A LL K
Sbjct: 321 SVPTEAGHYGLLIENFCKAGQYDKAVKLLDK 351
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 107/498 (21%), Positives = 198/498 (39%), Gaps = 81/498 (16%)
Query: 128 FTHEMVLKVLKNLESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLV 187
F HE+V VL + ++S + A +FF WV + +T+ ++ I+G + ++
Sbjct: 10 FDHELVYNVLHSSKTS-EHALQFFRWVERSNLFEHNRETHLKIIEILGRASKLNHARCIL 68
Query: 188 DVMKKKGYGVASHVRNKMTEKFEKEGLESDLEKLKGIFATGSIDNSIEKVASRICKVVRS 247
M KKG + M + + KEG+ + K+ +E++
Sbjct: 69 LDMPKKGLEWDEDMWVMMIDSYGKEGIVQESVKMF---------QKMEELG--------- 110
Query: 248 DIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAM 307
VER ++ N F V+ + G F + E ++ ++N M
Sbjct: 111 ------VERTIKSYNALFK------VILRRGRYMMAKRYFNKMLSEG--IEPTRHTFNVM 156
Query: 308 A---SVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMA 364
+ G+ + +RF+ ++M+S+ ++ T ++ + ++EA + Y M
Sbjct: 157 IWGFFLSGKVETANRFF---EDMKSREISPDVVTYNTMINGYYRVKKMEEA-EKYFVEMK 212
Query: 365 CKN-KPSVNCCTFLLRKIVVSKQLD--MRLFSKVVRVFRENGNVLTDAMLNSVLKALISV 421
+N +P+V T L++ V Q+D +RL ++ + F N +T +++L L +
Sbjct: 213 GRNIEPTVVTYTTLIKGYVSVDQVDDALRLVEEM-KGFGIKPNAIT---YSTLLPGLCNA 268
Query: 422 GRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSA----GKKDEANEFMDHMEASGSDVG 477
+M E ILK M + + N I RL S+ G D A + + M
Sbjct: 269 EKMSEARVILKEMMDKYLAPTDN---SIFLRLISSHCKSGNLDAAVDVLKAMIRLSVPTE 325
Query: 478 DKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFV 537
+ LI+ C AG DKA K++EK+ + L + Y
Sbjct: 326 AGHYGLLIENFCKAGQYDKAVKLLDKLIEKDIILRPQSTLHLEPSAY------------- 372
Query: 538 HNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPFIKYVSKSGT 597
N + EY + E + L++ G +D +L L++ H S+ G+
Sbjct: 373 -NPMIEYLCNNGQASKAETLVRQLMKLGVQDPTALNTLIRGH-------------SQEGS 418
Query: 598 SDDAIAFLKGMTSKRFPS 615
D A LK M ++ S
Sbjct: 419 PDSAFELLKIMLRRKVDS 436
>gi|224139020|ref|XP_002322960.1| predicted protein [Populus trichocarpa]
gi|222867590|gb|EEF04721.1| predicted protein [Populus trichocarpa]
Length = 694
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 110/477 (23%), Positives = 196/477 (41%), Gaps = 19/477 (3%)
Query: 165 KTYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRNKMTEKFEKEG-LESDLEKLKG 223
+TYN++++I E GL+D M K + + K G L S LE
Sbjct: 150 QTYNILIKISVKKRQFVEAKGLLDWMWSKDLKPDVYSYGTVINGMVKSGDLVSALEVFDE 209
Query: 224 IFATGSIDNS------IEKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKL 277
+F G + + I+ R V +IW V+ NV N ++ + K+
Sbjct: 210 MFERGLVPDVMCYNIMIDGFFKRGDYVQGKEIWERLVKGSCVYPNVVTYNVMINGLC-KM 268
Query: 278 GDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEME 337
G + ++ R + + D +Y+++ L +D +V EM + +++
Sbjct: 269 GRFDESLEMWERMKKNE--CEMDLFTYSSLICGLCDVGNVDGAVEVYKEMVKRSVVVDVV 326
Query: 338 TCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVR 397
T +L F +KE+ +L+ M +N +V +R + +++++ + V
Sbjct: 327 TYNALLNGFCRAGKIKESFELW-VMMGKENCHNVVSYNIFIRGLFENRKVEEAI--SVWE 383
Query: 398 VFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAG 457
+ R G+ ++ L G + + KILK ++GG + S I LS G
Sbjct: 384 LLRRRGSGADSTTYGVLIHGLCKNGHLNKALKILKEAKDGGDKLDAFAYSSIVDGLSKQG 443
Query: 458 KKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAI 517
+ DEA + M+ G ++ + LI G A L++A CF + +E +G S +
Sbjct: 444 RVDEALGIVHQMDKYGCELSPHVCNPLINGFVRASKLEEAI-CFFREMETKGCSPTVVSY 502
Query: 518 DLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMK 577
+ L+N C R DA FV + E D KP TY L+ L + AL+L +
Sbjct: 503 NTLINGLCKAERFSDAYSFVKE-MLEKDWKPDMITYSLLMDGLCQGKKIDMALNLWRQVL 561
Query: 578 DHGFPPFV---DPFIKYVSKSGTSDDAIAFLKGM-TSKRFPSMSVVLCLFAAFFQAR 630
G P V + + + +G +DA+ M S P++ L ++AR
Sbjct: 562 VKGLEPDVTMHNILMHGLCSAGKIEDALLLYSNMKQSNCLPNLVTHNTLMDGLYKAR 618
>gi|147767159|emb|CAN71515.1| hypothetical protein VITISV_021787 [Vitis vinifera]
Length = 655
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 82/423 (19%), Positives = 167/423 (39%), Gaps = 42/423 (9%)
Query: 233 SIEKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAE 292
+IEK RI + S + +E L++ V + L + V+++ GD FF WA
Sbjct: 89 AIEKTVYRILRKFHSRV--PKLELALQESGVAVRSGLTERVLNRCGDAGNLGYRFFVWAS 146
Query: 293 ESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYE-MEMETCVKVLGRFSERNM 351
+ +H Y AM +LG+ W +++EMR + + + V ++ RF+ M
Sbjct: 147 KQPGYRHSYEVYKAMIKILGKMRQFGAVWALIEEMRRENPQFVSPYVFVVLMRRFASARM 206
Query: 352 VKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAML 411
VK+A+++ + P C + D +F ++ +NG+V A L
Sbjct: 207 VKKAIEVLD------EMPKYGC------------EPDEHVFGCLLDALCKNGSVKEAASL 248
Query: 412 ---------------NSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSA 456
S+L G++ E +L + E GF + + + ++A
Sbjct: 249 FEDMRIRFTPTLKHFTSLLYGWCREGKLMEAKYVLVQIREAGFEPDIVVYNNLLTGYAAA 308
Query: 457 GKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYA 516
GK +A + + M + + +LI+ C +++A F +M + G
Sbjct: 309 GKMVDAYDLLKEMRRKECEPNVMSFTTLIQALCAKKKMEEAMRVFFEM-QSCGCPADAVT 367
Query: 517 IDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLM 576
L++ +C + + + N +++ + P TY ++ + ++ + L+ M
Sbjct: 368 YTTLISGFCKWGKISKGYELLDNMIQQGHI-PNPMTYLHIMAAHEKKEELEECIELMEEM 426
Query: 577 KDHGFPPFVDPF---IKYVSKSGTSDDAIAFLKGMTSKRF-PSMSVVLCLFAAFFQARRH 632
+ G P ++ + I+ K G + + M + P + + + F R
Sbjct: 427 RKIGCTPDLNIYNIVIRLACKLGEIKEGVRVWNEMEATGLSPGLDTFVIMIHGFLSQRCL 486
Query: 633 SEA 635
EA
Sbjct: 487 VEA 489
>gi|359492658|ref|XP_002281859.2| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g19290-like [Vitis vinifera]
Length = 939
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 89/344 (25%), Positives = 144/344 (41%), Gaps = 36/344 (10%)
Query: 236 KVASRICKVV---RSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAE 292
++ SRIC++V R + + LN FS+D+V V+ L P +L FF++
Sbjct: 42 ELVSRICRLVLLRRCN--------AISKLNFVFSDDIVDAVLRNLRLNPTASLGFFQFVS 93
Query: 293 ESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMV 352
+ + + SY + +L R ++ DE R+ ++ ++ C +F +R V
Sbjct: 94 KQQNFRPNVKSYCKLVHILSR-------GRMYDETRAYLNQL-VDLC-----KFKDRGNV 140
Query: 353 --KEAVDLY-EFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDA 409
E V +Y EFA + P+V ++ K+ V K L V + G + +
Sbjct: 141 IWDELVGVYREFAFS----PTV---FDMILKVYVEKGLTKNALY-VFDNMGKCGRIPSLR 192
Query: 410 MLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHM 469
NS+L L+ G + + + M G + M S + GK DEA F+ M
Sbjct: 193 SCNSLLNNLVKNGETHTAHYVYQQMIRVGIVPDVFMVSIMVNAFCKDGKVDEAAGFVKKM 252
Query: 470 EASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNR 529
E G + + SLI G+ GD++ A + M EK G S LL+ YC + +
Sbjct: 253 ENLGVEPNIVTYHSLINGYVSLGDVEAAKGVLKFMSEK-GVSRNVVTYTLLIKGYCKQCK 311
Query: 530 AIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLL 573
+A K + E L P Y LI DA+ LL
Sbjct: 312 MDEAEKVLRGMQEEAALVPDERAYGVLIDGYCRTGKIDDAVRLL 355
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 66/258 (25%), Positives = 105/258 (40%), Gaps = 23/258 (8%)
Query: 388 DMRLFSKVVRVFRENG---NVLTDAMLNSVLKALISVGRMGECNKILKAM-EEGGFIASS 443
D+ V++ E G NV+T +L +K +M E K+L+ M EE +
Sbjct: 276 DVEAAKGVLKFMSEKGVSRNVVTYTLL---IKGYCKQCKMDEAEKVLRGMQEEAALVPDE 332
Query: 444 NMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQK 503
+ GK D+A +D M G + SLI G+C G++ +A +
Sbjct: 333 RAYGVLIDGYCRTGKIDDAVRLLDEMLRLGLKTNLFICNSLINGYCKRGEIHEAEGVITR 392
Query: 504 MVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQ 563
MV+ + Y+ + L++ YC + +A ++E ++P TY L+K L
Sbjct: 393 MVDWNLKPDS-YSYNTLLDGYCREGHTSEAFNLCDKMLQE-GIEPTVLTYNTLLKGLCRV 450
Query: 564 RGFKDALSLLCLMKDHGFPP-------FVDPFIKYVSKSGTSD---DAIAFLKGMTSKR- 612
F DAL + LM G P +D K + G S D +A +G T R
Sbjct: 451 GAFDDALQIWHLMMKRGVAPDEVGYSTLLDGLFKMENFEGASTLWKDILA--RGFTKSRI 508
Query: 613 -FPSMSVVLCLFAAFFQA 629
F +M LC +A
Sbjct: 509 TFNTMISGLCKMGKMVEA 526
Score = 59.3 bits (142), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 84/368 (22%), Positives = 139/368 (37%), Gaps = 13/368 (3%)
Query: 279 DEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMET 338
DE +K L R +E + DE +Y + R ID ++LDEM G + +
Sbjct: 313 DEAEKVL---RGMQEEAALVPDERAYGVLIDGYCRTGKIDDAVRLLDEMLRLGLKTNLFI 369
Query: 339 CVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRV 398
C ++ + +R + EA + + KP LL F+ ++
Sbjct: 370 CNSLINGYCKRGEIHEAEGVITRMVDWNLKPDSYSYNTLLDGYCREGHTS-EAFNLCDKM 428
Query: 399 FRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGK 458
+E G T N++LK L VG + +I M + G S + L
Sbjct: 429 LQE-GIEPTVLTYNTLLKGLCRVGAFDDALQIWHLMMKRGVAPDEVGYSTLLDGLFKMEN 487
Query: 459 KDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAID 518
+ A+ + A G + ++I G C G + +A + F KM + G S G
Sbjct: 488 FEGASTLWKDILARGFTKSRITFNTMISGLCKMGKMVEAEEIFDKM-KDLGCSPDGITYR 546
Query: 519 LLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKD 578
L++ YC + A K V + + P Y LI L R + LL M
Sbjct: 547 TLIDGYCKASNVGQAFK-VKGAMEREPISPSIEMYNSLISGLFKSRRLVEVTDLLTEMGI 605
Query: 579 HGFPPFVDPFIKYVS---KSGTSDDAIAFLKGMTSKRFPSMSVVLC--LFAAFFQARRHS 633
G P + + + K G D A + MT S ++++C + + ++ R
Sbjct: 606 RGLTPNIVTYGALIDGWCKEGMLDKAFSSYFEMTENGL-SANIIICSTMVSGLYRLGRID 664
Query: 634 EAQDLLSK 641
EA L+ K
Sbjct: 665 EANLLMQK 672
Score = 48.1 bits (113), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 64/287 (22%), Positives = 112/287 (39%), Gaps = 25/287 (8%)
Query: 303 SYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKV------LGRFSERNMVKEAV 356
+Y A+ +E +D+ + EM G + C + LGR E N++ + +
Sbjct: 614 TYGALIDGWCKEGMLDKAFSSYFEMTENGLSANIIICSTMVSGLYRLGRIDEANLLMQKM 673
Query: 357 DLYEFAMACKNKPSVNCCTFL---LRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNS 413
+ F P C FL +R + K D + + F N++ N
Sbjct: 674 VDHGFF------PDHEC--FLKSDIRYAAIQKIADS--LDESCKTFLLPNNIV----YNI 719
Query: 414 VLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASG 473
+ L G++ + + + GF+ + + S+AG DEA D M G
Sbjct: 720 AIAGLCKTGKVDDARRFFSMLSLKGFVPDNFTYCTLIHGYSAAGNVDEAFRLRDEMLRRG 779
Query: 474 SDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDA 533
+ +LI G C + ++D+A F K+ +K G + L++ YC K +DA
Sbjct: 780 LVPNIVTYNALINGLCKSENVDRAQRLFHKLHQK-GLFPNVVTYNTLIDGYC-KIGNMDA 837
Query: 534 CKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHG 580
+ + + E + P TY LI L + ++ LL M G
Sbjct: 838 AFKLKDKMIEEGISPSVVTYSALINGLCKHGDIERSMKLLNQMIKAG 884
>gi|357164338|ref|XP_003580022.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06710,
mitochondrial-like [Brachypodium distachyon]
Length = 966
Score = 70.5 bits (171), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 88/362 (24%), Positives = 154/362 (42%), Gaps = 50/362 (13%)
Query: 282 KKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVK 341
+KA + GFV D S+Y + + L + +++ + + EM+ G ++ T
Sbjct: 434 EKAFQILKEMMRKGFVP-DTSTYTKVITFLCQAKKVEKSFLLFQEMKRAGVNPDVYTYTI 492
Query: 342 VLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMR--LFSKVVRVF 399
++ F + ++++A ++ + P+V T LL + SKQL +F ++V
Sbjct: 493 LIDSFCKAGLIEQARSWFDEMRSVGCSPNVVTYTALLHAYLKSKQLIQAHDIFHRMVDAA 552
Query: 400 RENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASS-NMKSKIAFR------ 452
V A+++ + KA GE K + E+ I +S N++S F
Sbjct: 553 CYPNAVTYSALIDGLCKA-------GEIQKACEVYEK--LIGTSGNVESDFYFEGNDTCT 603
Query: 453 --------------LSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAA 498
L A K +A+E +D M A+G + ++ +LI G C G +D A
Sbjct: 604 IAPNVVTYGALIDGLCKAQKVSDAHELLDAMLAAGCEPNQIVYDALIDGFCKIGKIDNAQ 663
Query: 499 DCFQKMVEKEGTSHAGYAIDLLVNTYCS------KNRAIDACKFVHNCVREYDLKPWHTT 552
+ F +M + GY V+TY S K+ +D V + + P T
Sbjct: 664 EVFLRM------TKCGYLPS--VHTYTSLIDRMFKDGRLDLAMKVLSEMLNDSCNPNVVT 715
Query: 553 YEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPF---IKYVSKSGTSDDAIAFLKGMT 609
Y +I L + AL+LL LM++ G P V + I + K+G +D ++ K M
Sbjct: 716 YTAMIDGLSKVGEIEKALNLLSLMEEKGCSPNVVTYTALIDGLGKTGKADASLKLFKQMN 775
Query: 610 SK 611
SK
Sbjct: 776 SK 777
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 104/518 (20%), Positives = 195/518 (37%), Gaps = 38/518 (7%)
Query: 134 LKVLKNLESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLVDVMKKK 193
L + E A R + E + E L + N+++R HGL E + +K
Sbjct: 140 LAEILGFEDPARTAERLLREIGEDDREVLR-RLLNVLVRRCCRHGLWDEALEELGRLKDF 198
Query: 194 GYGVASHVRNKMTEKFEKEG-LESDLEKLKGIFATG-SIDNS-IEKVASRICKVVRSDIW 250
GY ++ N + + G +E K + A+G +D S I A +CKV R W
Sbjct: 199 GYRPSAVTYNALVQVLASAGQVEMGFRVQKEMSASGFCMDRSTIGYFAQALCKVGR---W 255
Query: 251 GDDV---ERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAM 307
D + E++ +L+ ++ +++ +A+ F + + + +Y +
Sbjct: 256 ADALNMLEKEDFNLDTVLCTQMISGLME--ASLFNEAMSFLHRMRCNSCIP-NVVTYRTL 312
Query: 308 ASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKN 367
S ++ ++++ M ++G ++ + A L+ C +
Sbjct: 313 LSGFLKKKQFGWCKRIINMMMTEGCNPNPSLFNSLVHGYCNAGDYAYAYKLFNRMTTCGS 372
Query: 368 KPSVNCCTFLLRKIVVSKQL-DMRLFSKVVRVFRENGNVLTDAMLNSVLKA-----LISV 421
P + I ++L + L V +V+ E + +LN V A L V
Sbjct: 373 PPGYVAYNIFIGSICGQEELPNAELLDLVEKVYEEM--LAASCVLNKVNTANFSRCLCGV 430
Query: 422 GRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMW 481
G+ + +ILK M GF+ ++ +K+ L A K +++ M+ +G + +
Sbjct: 431 GKFEKAFQILKEMMRKGFVPDTSTYTKVITFLCQAKKVEKSFLLFQEMKRAGVNPDVYTY 490
Query: 482 VSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCV 541
LI C AG +++A F +M G S L++ Y + I A H V
Sbjct: 491 TILIDSFCKAGLIEQARSWFDEM-RSVGCSPNVVTYTALLHAYLKSKQLIQAHDIFHRMV 549
Query: 542 REYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPFIKYVSKSGTSDDA 601
+ P TY LI L + A + + K + SG +
Sbjct: 550 -DAACYPNAVTYSALIDGLCKAGEIQKACEV---------------YEKLIGTSGNVESD 593
Query: 602 IAFLKGMTSKRFPSMSVVLCLFAAFFQARRHSEAQDLL 639
F T P++ L +A++ S+A +LL
Sbjct: 594 FYFEGNDTCTIAPNVVTYGALIDGLCKAQKVSDAHELL 631
Score = 47.4 bits (111), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 58/289 (20%), Positives = 114/289 (39%), Gaps = 43/289 (14%)
Query: 281 PKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCV 340
P+ + FF WAE H + Y+A+A +LG ED ++L E+ E+
Sbjct: 114 PELCVRFFLWAERQVGYSHTGACYDALAEILGFEDPARTAERLLREIGEDDREVLRRLLN 173
Query: 341 KVLGRFSERNMVKEAVD----LYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVV 396
++ R + EA++ L +F +PS L++ + + Q++M +V
Sbjct: 174 VLVRRCCRHGLWDEALEELGRLKDFGY----RPSAVTYNALVQVLASAGQVEMGF--RVQ 227
Query: 397 RVFRENGNVLTDAMLNSVLKALISVGRMGE----------------CNKILKAMEEGGFI 440
+ +G + + + +AL VGR + C +++ + E
Sbjct: 228 KEMSASGFCMDRSTIGYFAQALCKVGRWADALNMLEKEDFNLDTVLCTQMISGLMEASLF 287
Query: 441 -----------ASSNMKSKIAFR--LSSAGKKDE---ANEFMDHMEASGSDVGDKMWVSL 484
+S + + + +R LS KK + ++ M G + ++ SL
Sbjct: 288 NEAMSFLHRMRCNSCIPNVVTYRTLLSGFLKKKQFGWCKRIINMMMTEGCNPNPSLFNSL 347
Query: 485 IKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDA 533
+ G+C AGD A F +M G+ A ++ + + C + +A
Sbjct: 348 VHGYCNAGDYAYAYKLFNRMTTC-GSPPGYVAYNIFIGSICGQEELPNA 395
Score = 43.9 bits (102), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 50/215 (23%), Positives = 93/215 (43%), Gaps = 10/215 (4%)
Query: 287 FFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRF 346
F+ ++ + + +Y A+ L + + ++LD M + G E ++ F
Sbjct: 594 FYFEGNDTCTIAPNVVTYGALIDGLCKAQKVSDAHELLDAMLAAGCEPNQIVYDALIDGF 653
Query: 347 SERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLD--MRLFSKVVRVFRENGN 404
+ + A +++ C PSV+ T L+ ++ +LD M++ S+++ N N
Sbjct: 654 CKIGKIDNAQEVFLRMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSEMLND-SCNPN 712
Query: 405 VLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAF--RLSSAGKKDEA 462
V+T +++ L VG + + +L MEE G S N+ + A L GK D +
Sbjct: 713 VVT---YTAMIDGLSKVGEIEKALNLLSLMEEKG--CSPNVVTYTALIDGLGKTGKADAS 767
Query: 463 NEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKA 497
+ M + G + LI C AG LD+A
Sbjct: 768 LKLFKQMNSKGCAPNYVTYRVLINHCCAAGLLDEA 802
>gi|326490553|dbj|BAJ84940.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 856
Score = 70.5 bits (171), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 91/397 (22%), Positives = 157/397 (39%), Gaps = 35/397 (8%)
Query: 206 TEKFEKEGLESDLEKLKGIFATGSIDNSIEKVASRICKVVRSDIWGDDVERQLRDLNVTF 265
T K G +S+L LK + A ++++++ WG E L L
Sbjct: 280 TMKGHGGGPQSNLRSLKSLRAVEQYYHTLQQMK-----------WGPMTEHVLDGLRCKI 328
Query: 266 ----SNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFW 321
+N ++K + D AL FF W + KHD +Y M +LG+
Sbjct: 329 DAFQANQVLKLLHDH-----NIALGFFHWLKRQPGFKHDGHTYTTMIGILGQAKQFGTMR 383
Query: 322 KVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPS-VNCCTFL-LR 379
K+LDEM S + + T +++ + N ++EAV ++E +P V CT + +
Sbjct: 384 KLLDEMSSVNCKPTVVTYNRIIHAYGRANYLREAVKVFEEMEGAGYQPDRVTYCTLIDIH 443
Query: 380 KIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGF 439
++ M L+ ++ V AM+N + K G++ K+ M + G
Sbjct: 444 AKSGYLEVAMDLYGRMQEVGLSPDTFTYSAMVNCLGKG----GQLAAAYKLFCEMIDNGC 499
Query: 440 IASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIK---GHCVAGDLDK 496
+ + I + A D + M+ +G DK+ S++ GHC G LD+
Sbjct: 500 TPNLVTYNIIIALQAKARNYDNVVKLYRDMQIAGFRP-DKITYSIVMEVLGHC--GHLDE 556
Query: 497 AADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEEL 556
A F +M Y LLV+ + A + H +++ L+P T L
Sbjct: 557 AEAVFLEMRRDWAPDEPVYG--LLVDLWGKAGNVDKALGWYHAMLQD-GLQPNVPTCNSL 613
Query: 557 IKNLLVQRGFKDALSLLCLMKDHGFPPFVDPFIKYVS 593
+ L F+DA +L M G P + + +S
Sbjct: 614 LSAFLKLNRFQDAYGVLQNMLAQGLVPSLQTYTLLLS 650
>gi|28393724|gb|AAO42273.1| unknown protein [Arabidopsis thaliana]
Length = 642
Score = 70.5 bits (171), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 94/425 (22%), Positives = 176/425 (41%), Gaps = 30/425 (7%)
Query: 231 DNSIEKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRW 290
D S+ + R ++V+ WG D E+ L L + + LV+ +++ + E + FF+W
Sbjct: 57 DPSVRMLDERFIRIVKIFKWGPDAEKALEVLKLKVDHRLVRSILE-IDVEINVKIQFFKW 115
Query: 291 AEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGY----EMEMETCVKVLGRF 346
A + +HD S+Y + L ++ + E+ Y + VK LGR
Sbjct: 116 AGKRRNFQHDCSTYMTLIRCLEEARLYGEMYRTIQEVVRNTYVSVSPAVLSELVKALGR- 174
Query: 347 SERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRE---NG 403
MV +A+ ++ A K KP+ + ++ ++ Q + KV V+ E G
Sbjct: 175 --AKMVSKALSVFYQAKGRKCKPTSSTYNSVILMLMQEGQHE-----KVHEVYTEMCNEG 227
Query: 404 NVLTDAMLNSVLKALIS----VGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKK 459
+ D + S ALIS +GR ++ M++ + + + + GK
Sbjct: 228 DCFPDTITYS---ALISSYEKLGRNDSAIRLFDEMKDNCMQPTEKIYTTLLGIYFKVGKV 284
Query: 460 DEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDL 519
++A + + M+ +G + LIKG AG +D+A ++ M+ ++G + ++
Sbjct: 285 EKALDLFEEMKRAGCSPTVYTYTELIKGLGKAGRVDEAYGFYKDML-RDGLTPDVVFLNN 343
Query: 520 LVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRG-FKDALSLLCLMKD 578
L+N R ++ V + + + P +Y +IK L + + S MK
Sbjct: 344 LMNILGKVGR-VEELTNVFSEMGMWRCTPTVVSYNTVIKALFESKAHVSEVSSWFDKMKA 402
Query: 579 HGFPP---FVDPFIKYVSKSGTSDDAIAFLKGMTSKRFPSMSVVLC-LFAAFFQARRHSE 634
P I K+ + A+ L+ M K FP C L A +A+R+
Sbjct: 403 DSVSPSEFTYSILIDGYCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINALGKAKRYEA 462
Query: 635 AQDLL 639
A +L
Sbjct: 463 ADELF 467
Score = 46.2 bits (108), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 61/283 (21%), Positives = 117/283 (41%), Gaps = 15/283 (5%)
Query: 305 NAMASVLGREDCIDRFWKVLDEM---RSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEF 361
N + ++LG+ ++ V EM R + T +K L F + V E ++
Sbjct: 342 NNLMNILGKVGRVEELTNVFSEMGMWRCTPTVVSYNTVIKAL--FESKAHVSEVSSWFDK 399
Query: 362 AMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISV 421
A PS + L+ + +++ L ++ E G A S++ AL
Sbjct: 400 MKADSVSPSEFTYSILIDGYCKTNRVEKALL--LLEEMDEKGFPPCPAAYCSLINALGKA 457
Query: 422 GRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMW 481
R +++ K ++E SS + + + GK EA + + M+ GS +
Sbjct: 458 KRYEAADELFKELKENFGNVSSRVYAVMIKHFGKCGKLSEAVDLFNEMKNQGSGPDVYAY 517
Query: 482 VSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKN---RAIDACKFVH 538
+L+ G AG +++A +KM E+ G + ++++N + RAI+ +
Sbjct: 518 NALMSGMVKAGMINEANSLLRKM-EENGCRADINSHNIILNGFARTGVPRRAIE----MF 572
Query: 539 NCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGF 581
++ +KP TY L+ F++A ++ MKD GF
Sbjct: 573 ETIKHSGIKPDGVTYNTLLGCFAHAGMFEEAARMMREMKDKGF 615
>gi|15233259|ref|NP_188222.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75274469|sp|Q9LW84.1|PP236_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g16010
gi|9294448|dbj|BAB02667.1| unnamed protein product [Arabidopsis thaliana]
gi|332642241|gb|AEE75762.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 642
Score = 70.5 bits (171), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 94/425 (22%), Positives = 176/425 (41%), Gaps = 30/425 (7%)
Query: 231 DNSIEKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRW 290
D S+ + R ++V+ WG D E+ L L + + LV+ +++ + E + FF+W
Sbjct: 57 DPSVRMLDERFIRIVKIFKWGPDAEKALEVLKLKVDHRLVRSILE-IDVEINVKIQFFKW 115
Query: 291 AEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGY----EMEMETCVKVLGRF 346
A + +HD S+Y + L ++ + E+ Y + VK LGR
Sbjct: 116 AGKRRNFQHDCSTYMTLIRCLEEARLYGEMYRTIQEVVRNTYVSVSPAVLSELVKALGR- 174
Query: 347 SERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRE---NG 403
MV +A+ ++ A K KP+ + ++ ++ Q + KV V+ E G
Sbjct: 175 --AKMVSKALSVFYQAKGRKCKPTSSTYNSVILMLMQEGQHE-----KVHEVYTEMCNEG 227
Query: 404 NVLTDAMLNSVLKALIS----VGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKK 459
+ D + S ALIS +GR ++ M++ + + + + GK
Sbjct: 228 DCFPDTITYS---ALISSYEKLGRNDSAIRLFDEMKDNCMQPTEKIYTTLLGIYFKVGKV 284
Query: 460 DEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDL 519
++A + + M+ +G + LIKG AG +D+A ++ M+ ++G + ++
Sbjct: 285 EKALDLFEEMKRAGCSPTVYTYTELIKGLGKAGRVDEAYGFYKDML-RDGLTPDVVFLNN 343
Query: 520 LVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRG-FKDALSLLCLMKD 578
L+N R ++ V + + + P +Y +IK L + + S MK
Sbjct: 344 LMNILGKVGR-VEELTNVFSEMGMWRCTPTVVSYNTVIKALFESKAHVSEVSSWFDKMKA 402
Query: 579 HGFPP---FVDPFIKYVSKSGTSDDAIAFLKGMTSKRFPSMSVVLC-LFAAFFQARRHSE 634
P I K+ + A+ L+ M K FP C L A +A+R+
Sbjct: 403 DSVSPSEFTYSILIDGYCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINALGKAKRYEA 462
Query: 635 AQDLL 639
A +L
Sbjct: 463 ANELF 467
Score = 47.8 bits (112), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 62/283 (21%), Positives = 117/283 (41%), Gaps = 15/283 (5%)
Query: 305 NAMASVLGREDCIDRFWKVLDEM---RSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEF 361
N + ++LG+ ++ V EM R + T +K L F + V E ++
Sbjct: 342 NNLMNILGKVGRVEELTNVFSEMGMWRCTPTVVSYNTVIKAL--FESKAHVSEVSSWFDK 399
Query: 362 AMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISV 421
A PS + L+ + +++ L ++ E G A S++ AL
Sbjct: 400 MKADSVSPSEFTYSILIDGYCKTNRVEKALL--LLEEMDEKGFPPCPAAYCSLINALGKA 457
Query: 422 GRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMW 481
R N++ K ++E SS + + + GK EA + + M+ GS +
Sbjct: 458 KRYEAANELFKELKENFGNVSSRVYAVMIKHFGKCGKLSEAVDLFNEMKNQGSGPDVYAY 517
Query: 482 VSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKN---RAIDACKFVH 538
+L+ G AG +++A +KM E+ G + ++++N + RAI+ +
Sbjct: 518 NALMSGMVKAGMINEANSLLRKM-EENGCRADINSHNIILNGFARTGVPRRAIE----MF 572
Query: 539 NCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGF 581
++ +KP TY L+ F++A ++ MKD GF
Sbjct: 573 ETIKHSGIKPDGVTYNTLLGCFAHAGMFEEAARMMREMKDKGF 615
>gi|356495784|ref|XP_003516753.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22670,
mitochondrial-like [Glycine max]
Length = 558
Score = 70.5 bits (171), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 92/415 (22%), Positives = 169/415 (40%), Gaps = 51/415 (12%)
Query: 258 LRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCI 317
L L+ S+ LV V+++ ++ AL FF+WA+ +H YN M +LG+
Sbjct: 118 LDGLSFQPSSGLVSQVLNRFSNDWVPALGFFKWAKSLTGYRHSPELYNLMVDILGKCRSF 177
Query: 318 DRFWKVLDEM-RSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTF 376
D ++++EM R +GY + +ET KV+ R + ++A++ + K
Sbjct: 178 DSMSELVEEMARLEGY-VTLETMTKVMRRLARARKHEDAIEAFGRMEKFGVKKDTAALNV 236
Query: 377 LLRKIVVSKQLDMRLFSKVVRVFR-------ENGNVLTDAM-----LNSVLKALISVGRM 424
L+ +V ++ KVV F+ + NVL ++ KA+ +
Sbjct: 237 LIDALVKGDSVEHA--HKVVLEFKGSIPLSSRSFNVLMHGWCRARDFDNARKAMEDMKEH 294
Query: 425 G----------------------ECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEA 462
G + +++L+ M E G ++ + + L AG+ +A
Sbjct: 295 GFEPDVFSYTNFIEAYGHERDFRKVDQVLEEMRENGCPPNAVTYTSVMLHLGKAGQLRKA 354
Query: 463 NEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVN 522
E + M++ G + S+I AG L A D F+ M K+G + +++
Sbjct: 355 LEVYEKMKSDGCVADTPFYSSMIFILGKAGRLKDACDVFEDM-PKQGVVRDVVTYNSMIS 413
Query: 523 TYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFP 582
T C+ +R A + + + + KP TY LL K + +L + DH F
Sbjct: 414 TACAHSREETALRLLKE-MEDGSCKPNVGTYH----RLLKMCCKKKRMKVLKFLLDHMFK 468
Query: 583 PFVDP-------FIKYVSKSGTSDDAIAFLKGMTSKRFPSMSVVLCLFAAFFQAR 630
+ P + + KSG +DA +FL+ M + F L A +++
Sbjct: 469 NNISPDLATYSLLVNALRKSGKVEDAYSFLEEMVLRGFTPKPSTLKKLAGELESK 523
>gi|356529971|ref|XP_003533559.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g19890-like [Glycine max]
Length = 693
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 102/485 (21%), Positives = 193/485 (39%), Gaps = 42/485 (8%)
Query: 128 FTHEMVLKVLKNLESSPDE--ARRFFNWVLEKESERLSSKTY------------------ 167
TH+ + ++ +L S A FFNW + R ++ Y
Sbjct: 74 LTHDQAVTIVASLASDAGSMVALSFFNWAIASSKFRHFTRLYIACAASLISNKNFEKAHE 133
Query: 168 --NLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRNKMTEKFEKEGLESDLEKL-KGI 224
M++ G V+E +V M +G ++ N + + + GL E L +
Sbjct: 134 VMQCMVKSFAEIGRVKEAIEMVIEMHNQGLAPSTKTLNWVVKIVTEMGLVEYAENLFDEM 193
Query: 225 FATGSIDNSIEKVASRI--CK---VVRSDIW-GDDVERQLRDLNVTFSNDLVKFVVDKLG 278
A G N + + CK V+ SD W G +ER N T S + +F
Sbjct: 194 CARGVQPNCVSYRVMVVGYCKLGNVLESDRWLGGMIERGFVVDNATLSLIVREFCEKGF- 252
Query: 279 DEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMET 338
+AL +FR E G ++ + ++ M L + + + +++L+EM +G++ + T
Sbjct: 253 --VTRALWYFRRFCEMG-LRPNLINFTCMIEGLCKRGSVKQAFEMLEEMVGRGWKPNVYT 309
Query: 339 CVKVLGRFSERNMVKEAVDLY-EFAMACKNKPSVNCCTFLLRKIVVSKQLDMR--LFSKV 395
++ ++ ++A L+ + + +KP+V T ++ ++++ L S++
Sbjct: 310 HTALIDGLCKKGWTEKAFRLFLKLVRSENHKPNVLTYTAMISGYCRDEKMNRAEMLLSRM 369
Query: 396 VRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSS 455
+E G +++ G +++ M E GF + + I L
Sbjct: 370 ----KEQGLAPNTNTYTTLIDGHCKAGNFERAYELMNVMNEEGFSPNVCTYNAIVDGLCK 425
Query: 456 AGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGY 515
G+ EA + + +G D + LI HC ++ +A F KMV K G +
Sbjct: 426 KGRVQEAYKVLKSGFRNGLDADKVTYTILISEHCKQAEIKQALVLFNKMV-KSGIQPDIH 484
Query: 516 AIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCL 575
+ L+ +C + R ++ F VR + L P + TY +I + + AL
Sbjct: 485 SYTTLIAVFCREKRMKESEMFFEEAVR-FGLVPTNKTYTSMICGYCREGNLRLALKFFHR 543
Query: 576 MKDHG 580
M DHG
Sbjct: 544 MSDHG 548
Score = 48.1 bits (113), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 77/363 (21%), Positives = 131/363 (36%), Gaps = 28/363 (7%)
Query: 284 ALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVL 343
AL FF WA S +H Y A A+ L + +K +E E ++
Sbjct: 95 ALSFFNWAIASSKFRHFTRLYIACAASL---------------ISNKNFEKAHEVMQCMV 139
Query: 344 GRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRE-- 401
F+E VKEA+++ PS ++++ + +M L +F E
Sbjct: 140 KSFAEIGRVKEAIEMVIEMHNQGLAPSTKTLNWVVKIVT-----EMGLVEYAENLFDEMC 194
Query: 402 -NGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKD 460
G ++ +G + E ++ L M E GF+ + S I G
Sbjct: 195 ARGVQPNCVSYRVMVVGYCKLGNVLESDRWLGGMIERGFVVDNATLSLIVREFCEKGFVT 254
Query: 461 EANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLL 520
A + G + +I+G C G + +A + ++MV + G Y L
Sbjct: 255 RALWYFRRFCEMGLRPNLINFTCMIEGLCKRGSVKQAFEMLEEMVGR-GWKPNVYTHTAL 313
Query: 521 VNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHG 580
++ C K A + VR + KP TY +I A LL MK+ G
Sbjct: 314 IDGLCKKGWTEKAFRLFLKLVRSENHKPNVLTYTAMISGYCRDEKMNRAEMLLSRMKEQG 373
Query: 581 FPPFVDPFIKYV---SKSGTSDDAIAFLKGMTSKRF-PSMSVVLCLFAAFFQARRHSEAQ 636
P + + + K+G + A + M + F P++ + + R EA
Sbjct: 374 LAPNTNTYTTLIDGHCKAGNFERAYELMNVMNEEGFSPNVCTYNAIVDGLCKKGRVQEAY 433
Query: 637 DLL 639
+L
Sbjct: 434 KVL 436
>gi|359479583|ref|XP_002275680.2| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
mitochondrial-like [Vitis vinifera]
gi|297735515|emb|CBI17955.3| unnamed protein product [Vitis vinifera]
Length = 627
Score = 70.1 bits (170), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 56/234 (23%), Positives = 102/234 (43%), Gaps = 6/234 (2%)
Query: 412 NSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEA 471
+S++ + GR + M + G + + + L AGK +EAN + M
Sbjct: 277 SSIIHGMCHTGRWEGAKGLFNEMVDEGVHPNVVTFNVLIDALCKAGKMEEANHLLKLMIQ 336
Query: 472 SGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAI 531
G + +LI G C+ G +D A D F M E +G + ++L+N YC R +
Sbjct: 337 RGESPDTFTYNTLIDGFCLEGRIDDARDLFVSM-ESKGIETDAVSYNVLINGYCKSGRMV 395
Query: 532 DACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPP---FVDPF 588
+A K + + ++ P TY L+ L + +DA +L MK H P +
Sbjct: 396 EAKKLYREMMCK-EIMPTVITYNTLLTGLFREGKVRDAWNLFGEMKVHDLTPESCTYNIL 454
Query: 589 IKYVSKSGTSDDAIAFLKGMTSKRF-PSMSVVLCLFAAFFQARRHSEAQDLLSK 641
+ + K+ +A+ + + F PS+ + CL +AR+ A++L ++
Sbjct: 455 LDGLCKNNHLSEAMELFHYLENHDFQPSIQIFNCLIDGLCKARKIEIARELFNR 508
Score = 41.6 bits (96), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 60/278 (21%), Positives = 107/278 (38%), Gaps = 12/278 (4%)
Query: 300 DESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLY 359
D +YN + E ID + M SKG E + + ++ + + + EA LY
Sbjct: 342 DTFTYNTLIDGFCLEGRIDDARDLFVSMESKGIETDAVSYNVLINGYCKSGRMVEAKKLY 401
Query: 360 EFAMACKNKPSV----NCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVL 415
M + P+V T L R+ V ++ KV + E+ N +L
Sbjct: 402 REMMCKEIMPTVITYNTLLTGLFREGKVRDAWNLFGEMKVHDLTPES------CTYNILL 455
Query: 416 KALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSD 475
L + E ++ +E F S + + + L A K + A E + + G +
Sbjct: 456 DGLCKNNHLSEAMELFHYLENHDFQPSIQIFNCLIDGLCKARKIEIARELFNRLSHEGLE 515
Query: 476 VGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACK 535
+ +I G C +G L+ A D F M EK G + + L+ +C + +
Sbjct: 516 PNVITYTVMIHGLCKSGQLENAKDLFLGMEEK-GCAPNLVTFNTLMRGFCQNDEMQKVVE 574
Query: 536 FVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLL 573
+ + E D P +T ++ L +++ L LL
Sbjct: 575 LLQE-MAEKDFSPDASTISIVVDLLSKDEKYREYLHLL 611
>gi|297807523|ref|XP_002871645.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297317482|gb|EFH47904.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 524
Score = 70.1 bits (170), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 96/431 (22%), Positives = 183/431 (42%), Gaps = 51/431 (11%)
Query: 253 DVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWA-EESGFVKHDESSYNAMASVL 311
++ +L + +V SN+LV ++ ++ ++ + A FF WA ++ G+V+ Y++M S+L
Sbjct: 62 ELRNKLEECDVKPSNELVVEILSQVRNDWETAFTFFVWAGKQQGYVR-SVREYHSMISIL 120
Query: 312 GREDCIDRFWKVLDEMRSKGYEM-EMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPS 370
G+ D W ++DEMR + +T + ++ ++ + V +A++ + K +
Sbjct: 121 GKMRKFDTAWTLIDEMRKFSPSLVNSQTLLIMIRKYCAVHDVGKAINTFHAYKRFKLEMG 180
Query: 371 VNCCTFLLRKIVVSKQL----------------DMRLFSKVV--------------RVFR 400
++ LL + K + D + F+ V+ RV+
Sbjct: 181 IDDFQSLLSALCRYKNVSDAEHLIFCNKDTYPFDAKSFNIVLNGWCNVIGSPREAERVWM 240
Query: 401 ENGNVLTDAMLNSVLKALISVGRMGECNKILK---AMEEGGFIASSNMKSKIAFRLSSAG 457
E GNV + S + + G NK+LK M++ + + + L+ A
Sbjct: 241 EMGNVGVKHDVVSYSSMISCYSKGGSLNKVLKLFDRMKKESIEPDRKVYNAVIHALAKAS 300
Query: 458 KKDEANEFMDHMEAS-GSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYA 516
EA M ME G + + SLIK C A ++A F +M+EK
Sbjct: 301 FVSEARNLMKTMEEEKGMEPNVVTYNSLIKPLCKARKTEEAKQVFDEMLEK--------G 352
Query: 517 IDLLVNTYCSKNRAIDACKFVHNCV---REYDLKPWHTTYEELIKNLLVQRGFKDALSLL 573
+ + TY + R + + V + R+ +P TY LI+ L R F + L L
Sbjct: 353 LFPTIRTYHAFMRILRTGEEVFELLAKMRKMGCQPTVDTYIMLIRKLCRWRDFDNVLLLW 412
Query: 574 CLMKDHGFPPFVDPFIKYVSK---SGTSDDAIAFLKGMTSKRFPSMSVVLCLFAAFFQAR 630
MK+ G P + +I + +G ++A + K M K V + ++F +
Sbjct: 413 NEMKEKGVGPDLSSYIVMIHGLFLNGKIEEAYGYYKEMKEKGMRPNENVEDMIQSWFSGK 472
Query: 631 RHSEAQDLLSK 641
+++E + + SK
Sbjct: 473 QYAEQRVIDSK 483
>gi|147857775|emb|CAN80799.1| hypothetical protein VITISV_019809 [Vitis vinifera]
Length = 1099
Score = 70.1 bits (170), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 66/312 (21%), Positives = 136/312 (43%), Gaps = 9/312 (2%)
Query: 283 KALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKV 342
+AL F +E G + + +Y + L +E+ +D K+L EM KG + T +
Sbjct: 317 EALNLFNEMKEKG-CEPNVHTYTVLIDGLCKENKMDEARKMLSEMSEKGLIPSVVTYNAL 375
Query: 343 LGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLD--MRLFSKVVRVFR 400
+ + + M+ +A ++ + + P+ L+ + +++ M L +K++ +
Sbjct: 376 IDGYCKEGMIDDAFEILDLMESNSCGPNTRTYNELICGLCKKRKVHKAMALLNKMLE-RK 434
Query: 401 ENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKD 460
+ +++T NS++ V + ++L M E G + S L G+ +
Sbjct: 435 LSPSLIT---YNSLIHGQCKVNDLESAYRLLSLMNENGLVPDQWTYSVFIDTLCKEGRVE 491
Query: 461 EANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLL 520
EA D ++A G + ++ +LI G+C G +D A ++M+ ++ Y ++L
Sbjct: 492 EAGTLFDSVKAKGVKANEVIYTALIDGYCKVGKIDVAYSLLERMLNDACLPNS-YTYNVL 550
Query: 521 VNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHG 580
+ C + + +A V + +KP TY LI +L F AL + M G
Sbjct: 551 IEGLCKEKKMKEASSLVAKMLT-MGVKPTVVTYTILIGEMLKDGAFDHALKVFNHMVSLG 609
Query: 581 FPPFVDPFIKYV 592
+ P V + ++
Sbjct: 610 YQPDVCTYTAFL 621
Score = 58.5 bits (140), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 101/429 (23%), Positives = 172/429 (40%), Gaps = 47/429 (10%)
Query: 229 SIDNSIEKVASRICKVVRSDIWGD--DVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALI 286
S+D+ +++++ ++ W + + L L + + L F +D P+ AL
Sbjct: 32 SLDSEPVDLSAQLLSILSRPNWQKHPSLRKLLPSLTPSHVSSLFAFNLD-----PQTALS 86
Query: 287 FFRW-AEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYE--MEMETCVKVL 343
FF W A GF KH+ SY++M ++L R R V +++R + +E + VL
Sbjct: 87 FFNWIALRPGF-KHNVHSYSSMLNILIRA----RLLGVAEKIRISMIKSCCSIEDVLFVL 141
Query: 344 GRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRE-- 401
F + N E ++F KP++ C +L + SK L L ++ V+ E
Sbjct: 142 EVFRKMNADGE----FKF------KPTLRCYNTILMSL--SKFL---LIDEMKTVYLELL 186
Query: 402 ----NGNVLT-DAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSA 456
+ N+ T +AM+N K +G + E + + G + + +
Sbjct: 187 NNQISPNIYTFNAMVNGYCK----IGNVVEAELYASKIVQAGLHPDTFTYTSLILGHCRN 242
Query: 457 GKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYA 516
D A E M G + + +LI G C AG +++A F M E +
Sbjct: 243 KGVDNAYEVFLIMPQKGCQRNEVSYTNLIHGLCEAGRINEALKLFADMTE-DNCCPTVRT 301
Query: 517 IDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLM 576
+L+ R ++A N ++E +P TY LI L + +A +L M
Sbjct: 302 YTVLIYALSGSGRKVEALNLF-NEMKEKGCEPNVHTYTVLIDGLCKENKMDEARKMLSEM 360
Query: 577 KDHGFPPFV---DPFIKYVSKSGTSDDAIAFLKGMTSKRF-PSMSVVLCLFAAFFQARRH 632
+ G P V + I K G DDA L M S P+ L + R+
Sbjct: 361 SEKGLIPSVVTYNALIDGYCKEGMIDDAFEILDLMESNSCGPNTRTYNELICGLCKKRKV 420
Query: 633 SEAQDLLSK 641
+A LL+K
Sbjct: 421 HKAMALLNK 429
Score = 56.2 bits (134), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 45/190 (23%), Positives = 80/190 (42%), Gaps = 2/190 (1%)
Query: 394 KVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRL 453
+V + + G + +++ L GR+ E K+ M E + + + + L
Sbjct: 250 EVFLIMPQKGCQRNEVSYTNLIHGLCEAGRINEALKLFADMTEDNCCPTVRTYTVLIYAL 309
Query: 454 SSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHA 513
S +G+K EA + M+ G + + LI G C +D+A +M EK G +
Sbjct: 310 SGSGRKVEALNLFNEMKEKGCEPNVHTYTVLIDGLCKENKMDEARKMLSEMSEK-GLIPS 368
Query: 514 GYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLL 573
+ L++ YC + DA + + + + P TY ELI L +R A++LL
Sbjct: 369 VVTYNALIDGYCKEGMIDDAFEIL-DLMESNSCGPNTRTYNELICGLCKKRKVHKAMALL 427
Query: 574 CLMKDHGFPP 583
M + P
Sbjct: 428 NKMLERKLSP 437
Score = 45.1 bits (105), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 113/531 (21%), Positives = 206/531 (38%), Gaps = 92/531 (17%)
Query: 141 ESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASH 200
E+ DEAR+ + + EK S TYN ++ G++ + + ++D+M+ G +
Sbjct: 347 ENKMDEARKMLSEMSEK-GLIPSVVTYNALIDGYCKEGMIDDAFEILDLMESNSCGPNTR 405
Query: 201 VRNKMTEKFEKEGLESDLEKLKGIFATGSIDNSIEKVASRICKVVRSDIWG----DDVER 256
N++ K K K A ++ +E+ S S I G +D+E
Sbjct: 406 TYNELICGLCK--------KRKVHKAMALLNKMLERKLSPSLITYNSLIHGQCKVNDLES 457
Query: 257 QLRDLNVTFSNDLV------KFVVDKLGDEPK--KALIFFRWAEESGFVKHDESSYNAMA 308
R L++ N LV +D L E + +A F + G VK +E Y A+
Sbjct: 458 AYRLLSLMNENGLVPDQWTYSVFIDTLCKEGRVEEAGTLFDSVKAKG-VKANEVIYTALI 516
Query: 309 SVLGREDCIDRFWKVLDEMRSKGYEMEMETC-VKVLGRFSERNMVKEAVDLYEFAMACKN 367
+ ID + +L+ M + T V + G E+ M KEA L +
Sbjct: 517 DGYCKVGKIDVAYSLLERMLNDACLPNSYTYNVLIEGLCKEKKM-KEASSLVAKMLTMGV 575
Query: 368 KPSVNCCTFLLRKIVVSKQLD--MRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMG 425
KP+V T L+ +++ D +++F+ +V + + +V T + L A S G +
Sbjct: 576 KPTVVTYTILIGEMLKDGAFDHALKVFNHMVSLGYQ-PDVCT---YTAFLHAYFSQGMLE 631
Query: 426 ECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGS----------- 474
E + ++ M E G + + + + G A +F+ M +G
Sbjct: 632 EVDDVIAKMNEEGILPDLVTYTVLIDGYARLGLTHRAFDFLKCMVDTGCKPSLYIVSILI 691
Query: 475 ---------------------------DVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEK 507
D+ D +W +L + + A F+KMVE
Sbjct: 692 KNLSHENRMKETRSEIGIDSVSNVNSVDIAD-VWKTL--------EYEIALKLFEKMVEH 742
Query: 508 EGTSHAGYAIDL-----LVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLV 562
G ID+ L+ +C + R +A VH+ ++E + P Y L+
Sbjct: 743 ------GCTIDVSIYGALIAGFCQQERLEEAQGLVHH-MKERGMSPSEDIYNSLLDCCCK 795
Query: 563 QRGFKDALSLLCLMKDHGFPPFVDPFIKYVSK---SGTSDDAIAFLKGMTS 610
+ +A+ L+ M ++G P ++ + V G+++ A A G+ S
Sbjct: 796 LGVYAEAVRLVDAMVENGLLPLLESYKLLVCGLYIEGSNEKAKAVFHGLLS 846
Score = 40.0 bits (92), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 45/249 (18%), Positives = 96/249 (38%), Gaps = 39/249 (15%)
Query: 395 VVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLS 454
+V +E G ++ + NS+L +G E +++ AM E G + + L
Sbjct: 770 LVHHMKERGMSPSEDIYNSLLDCCCKLGVYAEAVRLVDAMVENGLLPLLESYKLLVCGLY 829
Query: 455 SAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAG 514
G ++A + + G + + W LI G +D+ ++ M EK+ T+ A
Sbjct: 830 IEGSNEKAKAVFHGLLSCGYNYDEVAWKVLIDGLLKRDLVDECSELIDIMEEKDATAQAD 889
Query: 515 YAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIK---------------- 558
A C+ + A + +++L+ + EL +
Sbjct: 890 IA--------CAALMRLAAANSTKGALEDHELRGLSVNHGELTQLSGLVNNLISVGLGCV 941
Query: 559 ----------NLLVQRGFKDALSLLCLMKDHGFPPFVDPFIKYVSKSGTSDDAIAFLKGM 608
N+L+++ ++D + +++ H + + I++ + S D A AFL +
Sbjct: 942 ATFAAVVLEDNVLMEKAWQD----IGILRAHAWNKILQKGIEH-TPSDKIDAAAAFLDSL 996
Query: 609 TSKRFPSMS 617
PS++
Sbjct: 997 KEPELPSLA 1005
>gi|449532420|ref|XP_004173179.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At1g05670, mitochondrial-like [Cucumis sativus]
Length = 748
Score = 70.1 bits (170), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 73/337 (21%), Positives = 145/337 (43%), Gaps = 16/337 (4%)
Query: 322 KVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKI 381
K DEM SK + T ++ F + V E +L+ ++ KP T L+
Sbjct: 384 KWFDEMLSKKISPDYITYTTLIQGFGQGGKVIEPQNLFHEMISRGLKPDEVTYTTLIDVY 443
Query: 382 VVSKQL--DMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGF 439
+ ++ L +++V++ V A+++ + K G + N++L M + G
Sbjct: 444 CKAGEMVNAFSLHNEMVQMGMTPNIVTYGALIDGLCKH----GELDTANELLDEMRKKGL 499
Query: 440 IASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAAD 499
+ + + + + AG ++A + M ME +G D + ++I +C GD+DKA
Sbjct: 500 QLNVCIYNSMVNGICKAGNIEQAIKLMKEMEVAGIDPDAITYTTVIDAYCRLGDIDKAHK 559
Query: 500 CFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKN 559
Q+M+++ G ++L+N +C D + + + E + P TY L+K
Sbjct: 560 LLQEMLDR-GLQPTVVTFNVLMNGFCMLGMLEDGDRLL-GWMLEKGIVPDAITYNTLMKQ 617
Query: 560 LLVQRGFKDALSLLCLMKDHGFPPFVDPF---IKYVSKSGTSDDAIAFLKGMTSKRF-PS 615
++ + M++ G P + + IK K+ +A K M K + P+
Sbjct: 618 HCIRNSMNTTTKIYKRMRNQGVAPDSNTYNILIKGHCKARNLKEAWFLYKEMIEKGYVPT 677
Query: 616 MSVVLCLFAAFFQARRHSEAQDLLSKCPRYVRNHADV 652
++ L F++ R+ EA++L + +R H V
Sbjct: 678 VTSYNALIKRFYKKRKFXEARELFEE----MRGHGLV 710
Score = 52.4 bits (124), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 45/200 (22%), Positives = 82/200 (41%), Gaps = 5/200 (2%)
Query: 412 NSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEA 471
NS++ L +G+ E K+L+ M I + + + + G AN++ D M +
Sbjct: 332 NSIILLLCKIGKSFEAEKVLREMMSQKIIPDNVVYTTLIHGFFKLGHVRTANKWFDEMLS 391
Query: 472 SGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAI 531
+ +LI+G G + + + F +M+ + G L++ YC +
Sbjct: 392 KKISPDYITYTTLIQGFGQGGKVIEPQNLFHEMISR-GLKPDEVTYTTLIDVYCKAGEMV 450
Query: 532 DACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFV---DPF 588
+A +HN + + + P TY LI L A LL M+ G V +
Sbjct: 451 NAFS-LHNEMVQMGMTPNIVTYGALIDGLCKHGELDTANELLDEMRKKGLQLNVCIYNSM 509
Query: 589 IKYVSKSGTSDDAIAFLKGM 608
+ + K+G + AI +K M
Sbjct: 510 VNGICKAGNIEQAIKLMKEM 529
Score = 52.4 bits (124), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 61/330 (18%), Positives = 130/330 (39%), Gaps = 41/330 (12%)
Query: 289 RWAEE--SGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRF 346
+W +E S + D +Y + G+ + + EM S+G + + T ++ +
Sbjct: 384 KWFDEMLSKKISPDYITYTTLIQGFGQGGKVIEPQNLFHEMISRGLKPDEVTYTTLIDVY 443
Query: 347 SERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVL 406
+ + A L+ + P++ L+ + +LD ++++ R+ G L
Sbjct: 444 CKAGEMVNAFSLHNEMVQMGMTPNIVTYGALIDGLCKHGELDTA--NELLDEMRKKGLQL 501
Query: 407 TDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFM 466
+ NS++ + G + + K++K ME G + + + G D+A++ +
Sbjct: 502 NVCIYNSMVNGICKAGNIEQAIKLMKEMEVAGIDPDAITYTTVIDAYCRLGDIDKAHKLL 561
Query: 467 DHMEASGS--------------------DVGDKM--WV-------------SLIKGHCVA 491
M G + GD++ W+ +L+K HC+
Sbjct: 562 QEMLDRGLQPTVVTFNVLMNGFCMLGMLEDGDRLLGWMLEKGIVPDAITYNTLMKQHCIR 621
Query: 492 GDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHT 551
++ +++M +G + ++L+ +C K R + F++ + E P T
Sbjct: 622 NSMNTTTKIYKRM-RNQGVAPDSNTYNILIKGHC-KARNLKEAWFLYKEMIEKGYVPTVT 679
Query: 552 TYEELIKNLLVQRGFKDALSLLCLMKDHGF 581
+Y LIK +R F +A L M+ HG
Sbjct: 680 SYNALIKRFYKKRKFXEARELFEEMRGHGL 709
>gi|302769173|ref|XP_002968006.1| hypothetical protein SELMODRAFT_88008 [Selaginella moellendorffii]
gi|300164744|gb|EFJ31353.1| hypothetical protein SELMODRAFT_88008 [Selaginella moellendorffii]
Length = 737
Score = 70.1 bits (170), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 131/622 (21%), Positives = 228/622 (36%), Gaps = 103/622 (16%)
Query: 107 IFY-----KFSDVNDISKQLELS-------GVVFTHEMVLKVLKNLESSPDEARRFFNWV 154
IFY +F V D S+ EL+ G +V +VL+ L+ D+A +FF+W
Sbjct: 64 IFYAQAAKEFLRVLDSSEDFELASRRLCEFGGYLVPSVVGRVLQQLDDL-DKAVKFFDWC 122
Query: 155 LEKESERLSSKTYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVAS--------------H 200
+ + S T N +L QE + D+ K G+ S
Sbjct: 123 TGQPGYKHSKFTCNCLLSAFVRKKKAQEAY---DLFKNHRCGLCSPDSITYSTLINGFCK 179
Query: 201 VRN-----KMTEKFEKEGLESDLEK----LKGIFATGSIDNSI----------------- 234
R+ ++ ++ EK G+ +KG+ G +D+++
Sbjct: 180 ARDFQQAYRLLDEMEKRGIVPHNAVYNTIIKGLCDNGRVDSALVHYRDMQRNCAPSVITY 239
Query: 235 EKVASRICKVVR----SDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRW 290
+ +CK R S I D +E VT++ + F KLG+ + ++F +
Sbjct: 240 TILVDALCKSARISDASLILEDMIEAGCAPNVVTYNTLINGFC--KLGNMDEAVVLFNQM 297
Query: 291 AEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERN 350
E S D +YN + +++ K+L EM G E T ++ +
Sbjct: 298 LENS--CSPDVFTYNILIDGYCKQERPQDGAKLLQEMVKYGCEPNFITYNTLMDSLVKSG 355
Query: 351 MVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMR-------------------- 390
+A +L + + KPS ++ QLD+
Sbjct: 356 KYIDAFNLAQMMLRRDCKPSHFTFNLMIDMFCKVGQLDLAYELFQLMTDRGCLPDIYTYN 415
Query: 391 -LFSKVVRVFR------------ENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEG 437
+ S R R E G NS++ L ++ E ++ + + G
Sbjct: 416 IMISGACRANRIDDARQLLERMTEAGCPPDVVTYNSIVSGLCKASQVDEAYEVYEVLRNG 475
Query: 438 GFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKA 497
G+ S + L + + D+A + + ME +GS + LI G C A LDK+
Sbjct: 476 GYFLDVVTCSTLIDGLCKSRRLDDAEKLLREMERNGSAPDVVAYTILIHGFCKADQLDKS 535
Query: 498 ADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELI 557
F +M++K G ++++ C R D C + + E + P Y +I
Sbjct: 536 LAFFSEMLDK-GCVPTVITYSIVIDKLCKSARVRDGCMLLKT-MLERGVTPDAIVYTSVI 593
Query: 558 KNLLVQRGFKDALSLLCLMKDHGFPPFV---DPFIKYVSKSGTSDDAIAFLKGMTSKR-F 613
L + +A L LMK G P V + + + K D+AI L+ M S
Sbjct: 594 DGLCKSDSYDEAYELYKLMKQTGCAPTVVTYNVLVDKLCKVSRLDEAIHLLEVMESDGCL 653
Query: 614 PSMSVVLCLFAAFFQARRHSEA 635
P +F F+++ H +A
Sbjct: 654 PDTVTYNSVFDGFWKSAEHDKA 675
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 92/418 (22%), Positives = 160/418 (38%), Gaps = 61/418 (14%)
Query: 265 FSNDLVKFVVDKLG---DEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFW 321
F LV VV ++ D+ KA+ FF W
Sbjct: 93 FGGYLVPSVVGRVLQQLDDLDKAVKFFDWCTG---------------------------- 124
Query: 322 KVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKI 381
GY+ TC +L F + +EA DL++ P +
Sbjct: 125 -------QPGYKHSKFTCNCLLSAFVRKKKAQEAYDLFKNHRCGLCSPDS-----ITYST 172
Query: 382 VVSKQLDMRLFSKVVRVFRE---NGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGG 438
+++ R F + R+ E G V +A+ N+++K L GR+ + M+
Sbjct: 173 LINGFCKARDFQQAYRLLDEMEKRGIVPHNAVYNTIIKGLCDNGRVDSALVHYRDMQRN- 231
Query: 439 FIASSNMKSKIAF-RLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKA 497
A S + I L + + +A+ ++ M +G + +LI G C G++D+A
Sbjct: 232 -CAPSVITYTILVDALCKSARISDASLILEDMIEAGCAPNVVTYNTLINGFCKLGNMDEA 290
Query: 498 ADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELI 557
F +M+E + + ++L++ YC + R D K + V+ Y +P TY L+
Sbjct: 291 VVLFNQMLENSCSPDV-FTYNILIDGYCKQERPQDGAKLLQEMVK-YGCEPNFITYNTLM 348
Query: 558 KNLLVQRGFKDALSLLCLMKDHGFPPFVDPF---IKYVSKSGTSDDAIAFLKGMTSKR-F 613
+L+ + DA +L +M P F I K G D A + MT +
Sbjct: 349 DSLVKSGKYIDAFNLAQMMLRRDCKPSHFTFNLMIDMFCKVGQLDLAYELFQLMTDRGCL 408
Query: 614 PSMSVVLCLFAAFFQARRHSEAQDLLSK-----CPRYVRNHADVLNLLYSKKSGGDSA 666
P + + + +A R +A+ LL + CP V + +++ L K S D A
Sbjct: 409 PDIYTYNIMISGACRANRIDDARQLLERMTEAGCPPDVVTYNSIVSGL-CKASQVDEA 465
Score = 40.0 bits (92), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 51/238 (21%), Positives = 98/238 (41%), Gaps = 8/238 (3%)
Query: 252 DDVERQLRDLNVTFSN-DLVKFVVDKLG----DEPKKALIFFRWAEESGFVKHDESSYNA 306
DD E+ LR++ S D+V + + G D+ K+L FF + G V +Y+
Sbjct: 498 DDAEKLLREMERNGSAPDVVAYTILIHGFCKADQLDKSLAFFSEMLDKGCVPT-VITYSI 556
Query: 307 MASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACK 366
+ L + + +L M +G + V+ + + EA +LY+
Sbjct: 557 VIDKLCKSARVRDGCMLLKTMLERGVTPDAIVYTSVIDGLCKSDSYDEAYELYKLMKQTG 616
Query: 367 NKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGE 426
P+V L+ K+ +LD + ++ V +G + NSV +
Sbjct: 617 CAPTVVTYNVLVDKLCKVSRLDEAI--HLLEVMESDGCLPDTVTYNSVFDGFWKSAEHDK 674
Query: 427 CNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSL 484
++ +AM+ G + M S + +L + K D+A E + +G+DV ++ +L
Sbjct: 675 AFRLFQAMKSRGCSPTPFMYSLLLTKLVAEEKMDQAMEIWEEALEAGADVDPEISRTL 732
>gi|242043130|ref|XP_002459436.1| hypothetical protein SORBIDRAFT_02g004626 [Sorghum bicolor]
gi|241922813|gb|EER95957.1| hypothetical protein SORBIDRAFT_02g004626 [Sorghum bicolor]
Length = 684
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 96/420 (22%), Positives = 160/420 (38%), Gaps = 41/420 (9%)
Query: 229 SIDNSIEKVASRICKVVRSDIWGDDV---ERQLRD--LNVTFSNDLVKFVVDKLGDEPKK 283
++ S + + + R+D D + R LRD TF+ + + +LG +
Sbjct: 140 AVTPSFRSYNAVLSTLARADCHADALLLYRRMLRDRVPPTTFTFGVAARALCRLG-RARD 198
Query: 284 ALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVL 343
AL R G V D Y + L + + +LDEM G ++ T V+
Sbjct: 199 ALALLRGMARHGCVP-DAVLYQTVIHALVAQGGVAEAATLLDEMLLMGCAADVNTFNDVV 257
Query: 344 GRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLD-------------MR 390
V+EA L + M PSV FLLR + ++Q D +
Sbjct: 258 LGLCGLGHVREAARLVDRMMMHGCTPSVVTYGFLLRGLCRTRQADEAYAMLGRVPEVNVV 317
Query: 391 LFSKVVRVFRENGNVLTDAML----------------NSVLKALISVGRMGECNKILKAM 434
+ + V+R G + L N ++ L +GR G ++L M
Sbjct: 318 MLNTVIRGCLAEGKLARATELYEMMGSKGCPPDVHTYNILMHGLCKLGRCGSAVRMLDEM 377
Query: 435 EEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDL 494
EE G + S + G D+A +D M A G + + + +I G L
Sbjct: 378 EEKGCAPNIVTYSTLLHSFCRNGMWDDARAMLDQMSAKGFSMNSQGYNGIIYALGKDGKL 437
Query: 495 DKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYE 554
D+A Q+M + +G + ++ C+ N +D + + + E + TY
Sbjct: 438 DEAMRLVQEM-KSQGCKPDICTYNTIIYHLCN-NDQMDEAEHIFGNLLEEGVVANGITYN 495
Query: 555 ELIKNLLVQRGFKDALSLLCLMKDHGFPPFV---DPFIKYVSKSGTSDDAIAFLKGMTSK 611
LI LL +++ L L M HG P V + IK + K G D ++ L+ M +K
Sbjct: 496 TLIHALLHSGRWQEGLRLANEMVLHGCPLDVVSYNGLIKALCKEGNVDRSMMLLEEMMTK 555
Score = 43.1 bits (100), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 65/305 (21%), Positives = 127/305 (41%), Gaps = 16/305 (5%)
Query: 263 VTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWK 322
VT+S L F + + D+ + L GF + YN + LG++ +D +
Sbjct: 387 VTYSTLLHSFCRNGMWDDARAML---DQMSAKGF-SMNSQGYNGIIYALGKDGKLDEAMR 442
Query: 323 VLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTF--LLRK 380
++ EM+S+G + ++ T ++ + + EA + F + N T+ L+
Sbjct: 443 LVQEMKSQGCKPDICTYNTIIYHLCNNDQMDEAEHI--FGNLLEEGVVANGITYNTLIHA 500
Query: 381 IVVSK--QLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGG 438
++ S Q +RL +++V +G L N ++KAL G + +L+ M G
Sbjct: 501 LLHSGRWQEGLRLANEMVL----HGCPLDVVSYNGLIKALCKEGNVDRSMMLLEEMMTKG 556
Query: 439 FIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAA 498
++ + + L AGK +A E M G + +LI G C G A
Sbjct: 557 IKPNNFSYNMLINELCKAGKVRDALELSKEMLNQGLTPDIVTYNTLINGLCKVGWTHAAL 616
Query: 499 DCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIK 558
+ +K+ E ++L++ +C K R +D + + + P T+ +++
Sbjct: 617 NLLEKL-PNENVHPDIVTYNILISWHC-KVRLLDDASMLLDKAVSGGIVPNERTWGMMVQ 674
Query: 559 NLLVQ 563
N + Q
Sbjct: 675 NFVRQ 679
>gi|255660890|gb|ACU25614.1| pentatricopeptide repeat-containing protein [Glandularia
microphylla]
Length = 484
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 86/391 (21%), Positives = 162/391 (41%), Gaps = 49/391 (12%)
Query: 258 LRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCI 317
+R+L +F ++LV V+ + AL FFRW E S +H+ ++ + +LGR +
Sbjct: 3 IRNLVPSFDHELVYNVLHS-SKTSEHALQFFRWVERSNLFEHNRETHLKIIEILGRASKL 61
Query: 318 DRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFL 377
+ +L +M KG E + + V ++ + ++ +V+E+V
Sbjct: 62 NHARCILLDMPKKGLEWDEDMWVMMIDSYGKQGIVQESV--------------------- 100
Query: 378 LRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEG 437
++F K+ E G T N++ K ++ GR + M
Sbjct: 101 ------------KMFQKM----EELGVERTIKSYNALFKVILRRGRYMMAKRYFNKMLSE 144
Query: 438 GFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKA 497
G + + + + + +GK + AN F + M++ + ++I G+ +++A
Sbjct: 145 GIEPTRHTFNVMIWGFFLSGKVETANRFFEDMKSREISPDVVTYNTMINGYYRVKKMEEA 204
Query: 498 ADCFQKMVEKEGTSHAGYAI--DLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEE 555
F VE +G + + L+ Y S ++ DA + V ++ + +KP TY
Sbjct: 205 EKYF---VEMKGRNIEPTVVTYTTLIKGYVSVDQVDDALRLVEE-MKGFGIKPNAITYST 260
Query: 556 LIKNLLVQRGFKDALSLLCLMKDHGFPPFVDP-FIKYVS---KSGTSDDAIAFLKGMTSK 611
L+ L +A +L M D P + F++ +S KSG D A LK M
Sbjct: 261 LLPGLCNAEKMSEARVILKEMMDKYLAPTDNSIFMRLISSHCKSGNLDAAADVLKAMVRL 320
Query: 612 RFPSMSVVL-CLFAAFFQARRHSEAQDLLSK 641
P+ + L F +A ++ +A LL K
Sbjct: 321 SVPTEAGHYGVLIENFCKAGQYDKAVKLLDK 351
Score = 49.3 bits (116), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 105/498 (21%), Positives = 196/498 (39%), Gaps = 81/498 (16%)
Query: 128 FTHEMVLKVLKNLESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLV 187
F HE+V VL + ++S + A +FF WV + +T+ ++ I+G + ++
Sbjct: 10 FDHELVYNVLHSSKTS-EHALQFFRWVERSNLFEHNRETHLKIIEILGRASKLNHARCIL 68
Query: 188 DVMKKKGYGVASHVRNKMTEKFEKEGLESDLEKLKGIFATGSIDNSIEKVASRICKVVRS 247
M KKG + M + + K+G+ + K+ +E++
Sbjct: 69 LDMPKKGLEWDEDMWVMMIDSYGKQGIVQESVKMF---------QKMEELG--------- 110
Query: 248 DIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAM 307
VER ++ N F V+ + G F + E ++ ++N M
Sbjct: 111 ------VERTIKSYNALFK------VILRRGRYMMAKRYFNKMLSEG--IEPTRHTFNVM 156
Query: 308 A---SVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMA 364
+ G+ + +RF+ ++M+S+ ++ T ++ + ++EA + Y M
Sbjct: 157 IWGFFLSGKVETANRFF---EDMKSREISPDVVTYNTMINGYYRVKKMEEA-EKYFVEMK 212
Query: 365 CKN-KPSVNCCTFLLRKIVVSKQLD--MRLFSKVVRVFRENGNVLTDAMLNSVLKALISV 421
+N +P+V T L++ V Q+D +RL ++ + F N +T +++L L +
Sbjct: 213 GRNIEPTVVTYTTLIKGYVSVDQVDDALRLVEEM-KGFGIKPNAIT---YSTLLPGLCNA 268
Query: 422 GRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSA----GKKDEANEFMDHMEASGSDVG 477
+M E ILK M + + N I RL S+ G D A + + M
Sbjct: 269 EKMSEARVILKEMMDKYLAPTDN---SIFMRLISSHCKSGNLDAAADVLKAMVRLSVPTE 325
Query: 478 DKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFV 537
+ LI+ C AG DKA K++EK+ + L + Y
Sbjct: 326 AGHYGVLIENFCKAGQYDKAVKLLDKLIEKDIILRPQSTLHLEPSAY------------- 372
Query: 538 HNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPFIKYVSKSGT 597
N + EY E + L++ G +D +L L++ H S+ G+
Sbjct: 373 -NPMIEYLCNNGQAAKAETLVRQLLKLGVQDPTALNTLIRGH-------------SQEGS 418
Query: 598 SDDAIAFLKGMTSKRFPS 615
D LK M ++ S
Sbjct: 419 PDSXFELLKIMLRRKVDS 436
>gi|255660904|gb|ACU25621.1| pentatricopeptide repeat-containing protein [Junellia seriphioides]
Length = 484
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 87/391 (22%), Positives = 162/391 (41%), Gaps = 49/391 (12%)
Query: 258 LRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCI 317
+R+L +F ++LV V+ + AL FFRW E S +H+ ++ + +LGR +
Sbjct: 3 IRNLVPSFDHELVYNVLHS-AKTSEHALQFFRWVERSNLFEHNRETHLKIIEILGRASKL 61
Query: 318 DRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFL 377
+ +L +M KG E + + V ++ + + +V+E+V
Sbjct: 62 NHARCILLDMPKKGLEWDEDMWVMMIDSYGKEGIVQESV--------------------- 100
Query: 378 LRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEG 437
++F K+ E G T N++ KA++ GR + M
Sbjct: 101 ------------KMFQKM----EELGVERTIKSYNALFKAILRRGRYMMAKRYFNKMLSE 144
Query: 438 GFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKA 497
G + + + + + +GK + AN F + M++ + ++I G+ +++A
Sbjct: 145 GIEPARHTFNVMIWGFFLSGKVETANRFFEDMKSREISPDVVTYNTMINGYYRVKKMEEA 204
Query: 498 ADCFQKMVEKEGTSHAGYAI--DLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEE 555
F VE +G + + L+ Y S ++ DA + V ++ + +KP TY
Sbjct: 205 EKYF---VEMKGRNIEPTVVTYTTLIKGYVSVDQVDDALRLVEE-MKGFGIKPNAITYST 260
Query: 556 LIKNLLVQRGFKDALSLLCLMKDHGFPPFVDP-FIKYVS---KSGTSDDAIAFLKGMTSK 611
L+ L +A S+L M D P + F++ +S SG D A LK M
Sbjct: 261 LLPGLCNAGKMIEARSILKEMMDKYLAPTDNSIFMRLISSQCNSGNLDAAADVLKAMIRL 320
Query: 612 RFPSMSVVL-CLFAAFFQARRHSEAQDLLSK 641
P+ + L F +A ++ +A LL K
Sbjct: 321 SVPTEAGHYGVLIENFCKAGQYDQAVKLLDK 351
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 107/498 (21%), Positives = 197/498 (39%), Gaps = 81/498 (16%)
Query: 128 FTHEMVLKVLKNLESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLV 187
F HE+V VL + ++S + A +FF WV + +T+ ++ I+G + ++
Sbjct: 10 FDHELVYNVLHSAKTS-EHALQFFRWVERSNLFEHNRETHLKIIEILGRASKLNHARCIL 68
Query: 188 DVMKKKGYGVASHVRNKMTEKFEKEGLESDLEKLKGIFATGSIDNSIEKVASRICKVVRS 247
M KKG + M + + KEG+ + K+ +E++
Sbjct: 69 LDMPKKGLEWDEDMWVMMIDSYGKEGIVQESVKMF---------QKMEELG--------- 110
Query: 248 DIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAM 307
VER ++ N F L + G F + E ++ ++N M
Sbjct: 111 ------VERTIKSYNALFKAIL------RRGRYMMAKRYFNKMLSEG--IEPARHTFNVM 156
Query: 308 A---SVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMA 364
+ G+ + +RF+ ++M+S+ ++ T ++ + ++EA + Y M
Sbjct: 157 IWGFFLSGKVETANRFF---EDMKSREISPDVVTYNTMINGYYRVKKMEEA-EKYFVEMK 212
Query: 365 CKN-KPSVNCCTFLLRKIVVSKQLD--MRLFSKVVRVFRENGNVLTDAMLNSVLKALISV 421
+N +P+V T L++ V Q+D +RL ++ + F N +T +++L L +
Sbjct: 213 GRNIEPTVVTYTTLIKGYVSVDQVDDALRLVEEM-KGFGIKPNAIT---YSTLLPGLCNA 268
Query: 422 GRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSA----GKKDEANEFMDHMEASGSDVG 477
G+M E ILK M + + N I RL S+ G D A + + M
Sbjct: 269 GKMIEARSILKEMMDKYLAPTDN---SIFMRLISSQCNSGNLDAAADVLKAMIRLSVPTE 325
Query: 478 DKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFV 537
+ LI+ C AG D+A K++EK+ + L + Y
Sbjct: 326 AGHYGVLIENFCKAGQYDQAVKLLDKLIEKDIILRPQSTLHLEPSAY------------- 372
Query: 538 HNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPFIKYVSKSGT 597
N + EY E + L++ G +D +L L++ H S+ G+
Sbjct: 373 -NPMIEYLCNNGQAAKAEALVRQLLKLGVQDPTALNTLIRGH-------------SQEGS 418
Query: 598 SDDAIAFLKGMTSKRFPS 615
D A LK M ++ S
Sbjct: 419 PDSAFELLKIMLRRKVDS 436
>gi|147861320|emb|CAN83994.1| hypothetical protein VITISV_031191 [Vitis vinifera]
Length = 559
Score = 69.7 bits (169), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 115/541 (21%), Positives = 207/541 (38%), Gaps = 39/541 (7%)
Query: 81 RNPMIC--SYSSEPAMEQKESDFTVVSDIFYKFSDVNDISKQLE--LSGVVFTHEMVLKV 136
R +C ++ + P + T +S+ K S + L+ L + H + L
Sbjct: 17 RGGFLCFSTWMTPPTSHCHDPILTTISEAI-KVSPTKPLHSSLKRILPSLTPNHLIDLIN 75
Query: 137 LKNLESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLVD-VMKKKGY 195
L SP FF W+ + RLS +Y M + H ++ E L+ V+ +KG
Sbjct: 76 LNPHSLSPPSLLSFFKWLSTQHHFRLSIHSYCTMTHFLCTHKMLSEAQSLLQFVVSRKGK 135
Query: 196 GVASHVRNKMTEKFEKEGL-ESDLEKLKGIFATGSIDNSIEKVASRICKVVRSDIWGDDV 254
AS V T E G +S+L + + D+ A + ++VR
Sbjct: 136 NSASSV---FTSVLEARGTHQSNL--VFSVLMNAYTDSGYFSDAIQCFRLVRK------- 183
Query: 255 ERQLRDLNVTFSNDLVKFVVDKLG--DEPKKALIFFRWAEESGFVKHDESSYNAMASVLG 312
+L + F + ++ D+L + A F+ + G+ D +N + L
Sbjct: 184 ----HNLQIPFHS--CGYLFDRLMKLNLTSPAWAFYEEILDCGYPP-DVCKFNVLMHRLC 236
Query: 313 REDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVN 372
+E I+ + E+ +G + + ++ + + + + L F M + P V
Sbjct: 237 KEHKINEAQLLFGEIGKRGLRPTVVSFNTLINGYCKSGNLDQGFRLKRFMMENRVFPDVF 296
Query: 373 CCTFLLRKIVVSKQLD--MRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKI 430
+ L+ + QLD +LF ++ + G V D +++ GR +I
Sbjct: 297 TYSVLINGLCKEGQLDDANKLFLEMC----DRGLVPNDVTFTTLINGHCVTGRADLGMEI 352
Query: 431 LKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCV 490
+ M G + + L G EA + + M G + LI G C
Sbjct: 353 YQQMLRKGVKPDVITYNTLINGLCKVGDLREAKKLVIEMTQRGLKPDKFTYTMLIDGCCK 412
Query: 491 AGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWH 550
GDL+ A + ++MV KEG A L++ +C + + I+A + + + E +KP
Sbjct: 413 EGDLESALEIRKEMV-KEGIELDNVAFTALISGFCREGQVIEAERTLRE-MLEAGIKPDD 470
Query: 551 TTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFV---DPFIKYVSKSGTSDDAIAFLKG 607
TY +I + K LL M+ G P V + + + K G +A L
Sbjct: 471 ATYTMVIHGFCKKGDVKTGFKLLKEMQCDGHVPGVVTYNVLLNGLCKQGQMKNANMLLDA 530
Query: 608 M 608
M
Sbjct: 531 M 531
>gi|356515931|ref|XP_003526650.1| PREDICTED: pentatricopeptide repeat-containing protein At1g77360,
mitochondrial-like [Glycine max]
Length = 461
Score = 69.7 bits (169), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 94/400 (23%), Positives = 164/400 (41%), Gaps = 22/400 (5%)
Query: 226 ATGSIDNSIEKVASRICKVVRS-DIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKA 284
A+ ++ + + + R+CKV+ + G D L V S DLV+ V+ + + A
Sbjct: 4 ASEAMIQDVGEASERVCKVMMTCPTLGLDT--ALNQTGVRVSPDLVENVLKRFENAGMPA 61
Query: 285 LIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLG 344
FF WAE+ H +Y+ M L + W ++ MR KG + +ET ++
Sbjct: 62 FRFFEWAEKQRGYSHSIRAYHLMIESLAKIRQYQIVWDLVSAMRKKGM-LNVETFCIMMR 120
Query: 345 RFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGN 404
+++ N V EAV Y F + K N F + K ++R ++ + G
Sbjct: 121 KYARANKVDEAV--YTFNVMDKYDVVPNLAAFNGLLSALCKSNNVRKAQEIFDAMK--GQ 176
Query: 405 VLTDAMLNSV-LKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEAN 463
+ D S+ L+ + ++ + M E G + L AG+ DEA
Sbjct: 177 FVPDEKSYSILLEGWGKAPNLPRAREVFREMVEAGCDPDVVTYGIMVDVLCKAGRVDEAV 236
Query: 464 EFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNT 523
E + M+ ++ L+ + V ++ A D F +M K+G A + L+
Sbjct: 237 EVVKEMDVGNCRPTSFIYSVLVHTYGVEHRIEDAIDTFLEMA-KKGIKADVVAYNALIGA 295
Query: 524 YCSKNRAIDACKFVHNCVREYD---LKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHG 580
+C N+ K VH ++E + + P T +I +++ Q A + C M
Sbjct: 296 FCKVNKF----KNVHRVLKEMESNGVAPNSRTCNVIISSMIGQGQTDRAFRVFCRMIKLC 351
Query: 581 FPPFVDPF---IKYVSKSGTSDDAIAFLKGMTSKRF-PSM 616
P D + IK + + A+ K M SK+F PSM
Sbjct: 352 -EPDADTYTMMIKMFCEKNELEMALKIWKYMKSKQFVPSM 390
Score = 58.5 bits (140), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 99/464 (21%), Positives = 181/464 (39%), Gaps = 62/464 (13%)
Query: 121 LELSGVVFTHEMVLKVLKNLESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLV 180
L +GV + ++V VLK E++ A RFF W ++ S + Y+LM+ +
Sbjct: 35 LNQTGVRVSPDLVENVLKRFENAGMPAFRFFEWAEKQRGYSHSIRAYHLMIESLAKIRQY 94
Query: 181 QEFWGLVDVMKKKGYGVASHVRNKMTEKFEKEGLESDLEKLKGIFATGSIDNSIEKVASR 240
Q W LV M+KKG E F
Sbjct: 95 QIVWDLVSAMRKKGM--------LNVETF------------------------------- 115
Query: 241 ICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLG--------DEPKKALIFFRWAE 292
C ++R + V+ + NV D+V + G + +KA F A
Sbjct: 116 -CIMMRKYARANKVDEAVYTFNVMDKYDVVPNLAAFNGLLSALCKSNNVRKAQEIFD-AM 173
Query: 293 ESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMV 352
+ FV ++ SY+ + G+ + R +V EM G + ++ T ++ + V
Sbjct: 174 KGQFVPDEK-SYSILLEGWGKAPNLPRAREVFREMVEAGCDPDVVTYGIMVDVLCKAGRV 232
Query: 353 KEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENG--NVLTDAM 410
EAV++ + +P+ +F+ +V + ++ R+ + F E + D +
Sbjct: 233 DEAVEVVKEMDVGNCRPT----SFIYSVLVHTYGVEHRI-EDAIDTFLEMAKKGIKADVV 287
Query: 411 -LNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHM 469
N+++ A V + +++LK ME G +S + I + G+ D A M
Sbjct: 288 AYNALIGAFCKVNKFKNVHRVLKEMESNGVAPNSRTCNVIISSMIGQGQTDRAFRVFCRM 347
Query: 470 EASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNR 529
D + +IK C +L+ A ++ M K+ + + L+ C K+
Sbjct: 348 IKLCEPDADT-YTMMIKMFCEKNELEMALKIWKYMKSKQFVP-SMHTFSALIKGLCEKDN 405
Query: 530 AIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLL 573
A AC + + E ++P T+ L + LL++ G +D L L
Sbjct: 406 AAKACVVMEEMI-EKGIRPSRITFGRL-RQLLIKEGREDVLKFL 447
>gi|302758166|ref|XP_002962506.1| hypothetical protein SELMODRAFT_450632 [Selaginella moellendorffii]
gi|300169367|gb|EFJ35969.1| hypothetical protein SELMODRAFT_450632 [Selaginella moellendorffii]
Length = 807
Score = 69.7 bits (169), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 90/385 (23%), Positives = 156/385 (40%), Gaps = 18/385 (4%)
Query: 262 NVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFW 321
N S LV ++ + + + A++FF WA +H +YN L R + +
Sbjct: 52 NGQLSQRLVGVILHMVKN-GESAMVFFGWAGTRQDFRHTVHTYNCFYEALIRTGQCEEAY 110
Query: 322 KVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKI 381
++ E + + T ++ +K A LYE + +P V C FLL +
Sbjct: 111 RLFKEKWPQELIPDSITYGILIRGLCNFGKLKLACSLYEEMVDRGLRPVVLTCKFLLNAL 170
Query: 382 VVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIA 441
S L++ L R F + ++ A ++ L R+ E + M+ I
Sbjct: 171 CKSGNLELAL-----RYFEKMSSIPCAATWTILIDGLFRAIRVDEACYYFEEMKHTA-IP 224
Query: 442 SSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCF 501
++ + + L AGK EA + M + S+I GHC AGD+ KA
Sbjct: 225 NNWTYTVVINGLVKAGKVAEAERVLQEMPVPTL----ANYTSVIGGHCKAGDMGKAYHLL 280
Query: 502 QKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLL 561
+ M +++G + L++ +C + + ID + ++ D P TY+ LI L
Sbjct: 281 EDM-KRKGYQGDNLTYNTLIHGHC-RLQEIDRAYELLEEMKSNDFVPDIFTYDILIAGLC 338
Query: 562 VQRGFKDALSLLCLMK--DHGFPPFV--DPFIKYVSKSGTSDDAIA-FLKGMTSKRFPSM 616
+ +A LL ++ D P V + I SK+ +DA FL+ +T+ + P +
Sbjct: 339 RAKRLSEARDLLGTLRNEDDCTPNVVSYNTLIDGFSKAARVNDAYQLFLEMVTAGQHPDV 398
Query: 617 SVVLCLFAAFFQARRHSEAQDLLSK 641
L A R SEA L +
Sbjct: 399 VTYSTLIRGLCNAGRASEAHSYLEE 423
Score = 60.5 bits (145), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 95/390 (24%), Positives = 150/390 (38%), Gaps = 59/390 (15%)
Query: 298 KHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVD 357
+ D +YN + R IDR +++L+EM+S + ++ T ++ + EA D
Sbjct: 289 QGDNLTYNTLIHGHCRLQEIDRAYELLEEMKSNDFVPDIFTYDILIAGLCRAKRLSEARD 348
Query: 358 LYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRV------FRE---NGNVLTD 408
L +N+ CT VVS + FSK RV F E G
Sbjct: 349 LLG---TLRNEDD---CT----PNVVSYNTLIDGFSKAARVNDAYQLFLEMVTAGQHPDV 398
Query: 409 AMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDH 468
+++++ L + GR E + L+ M + + S + L AG+ D A+ D
Sbjct: 399 VTYSTLIRGLCNAGRASEAHSYLEEMVGKKILPKVPVYSSVISGLCRAGELDAASTVFDS 458
Query: 469 MEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKN 528
M A+G ++ SLI G C G L A ++M E+ G S G L+ C +
Sbjct: 459 MVANGCQPNLAVYNSLIYGLCKTGRLCDAKLRVKEMTER-GCSPDGVTYGTLIVGLCRWS 517
Query: 529 RAIDACKF-------------------------------VHNCVREYDLKPWHTTYEELI 557
R +AC V V P Y +I
Sbjct: 518 RTDEACDLYVRSLEQGIEISETSCNVVIASLRCLEQAQRVLRVVLATGNSPTAFFYATVI 577
Query: 558 KNLLVQRGFKDALSLLCLMKDHGFPP---FVDPFIKYVSKSGTSDDAIAFLKGMT---SK 611
++L + +A LL M G P VD + + + + A+AFL+ M SK
Sbjct: 578 ESLCKENNLAEARQLLEDMIGAGIKPDGSTVDALVGAMCRQDKAVVAMAFLEEMVRLGSK 637
Query: 612 RFPSMSVVLCLFAAFFQARRHSEAQDLLSK 641
PS+ L A F+A + SEA +L +
Sbjct: 638 --PSVGTYSTLLNALFKAGKPSEAHVVLRR 665
Score = 39.7 bits (91), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 67/345 (19%), Positives = 134/345 (38%), Gaps = 14/345 (4%)
Query: 303 SYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFA 362
SYN + + ++ +++ EM + G ++ T ++ EA E
Sbjct: 365 SYNTLIDGFSKAARVNDAYQLFLEMVTAGQHPDVVTYSTLIRGLCNAGRASEAHSYLEEM 424
Query: 363 MACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVG 422
+ K P V + ++ + + +LD S V NG A+ NS++ L G
Sbjct: 425 VGKKILPKVPVYSSVISGLCRAGELDAA--STVFDSMVANGCQPNLAVYNSLIYGLCKTG 482
Query: 423 RMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWV 482
R+ + +K M E G + L + DEA + G ++ +
Sbjct: 483 RLCDAKLRVKEMTERGCSPDGVTYGTLIVGLCRWSRTDEACDLYVRSLEQGIEISETSCN 542
Query: 483 SLIKG-HCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCV 541
+I C+ + A ++V G S + ++ + C +N +A + + + +
Sbjct: 543 VVIASLRCL-----EQAQRVLRVVLATGNSPTAFFYATVIESLCKENNLAEARQLLEDMI 597
Query: 542 REYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPF---IKYVSKSGTS 598
+KP +T + L+ + Q A++ L M G P V + + + K+G
Sbjct: 598 GA-GIKPDGSTVDALVGAMCRQDKAVVAMAFLEEMVRLGSKPSVGTYSTLLNALFKAGKP 656
Query: 599 DDAIAFLKGMTSKR--FPSMSVVLCLFAAFFQARRHSEAQDLLSK 641
+A L+ + S FP + L AA+ + EA+++L +
Sbjct: 657 SEAHVVLRRLISHTSCFPDELWYVGLIAAYSNQDQVEEARNVLQE 701
>gi|224130828|ref|XP_002328386.1| predicted protein [Populus trichocarpa]
gi|222838101|gb|EEE76466.1| predicted protein [Populus trichocarpa]
Length = 617
Score = 69.7 bits (169), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 86/396 (21%), Positives = 157/396 (39%), Gaps = 67/396 (16%)
Query: 297 VKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAV 356
V H+ S N + + L R +D V+ +M G + + T ++ +KEAV
Sbjct: 127 VTHNVYSLNVLINCLCRLSHVDFAVSVMGKMFKLGIQPDAITFNTLINGLCNEGKIKEAV 186
Query: 357 DLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRE-----------NGNV 405
L+ + ++P+V ++ + + M VRVFR+ N
Sbjct: 187 GLFNEMVWSGHEPNVISYNTVINGLCKNGNTIM-----AVRVFRKMEQNRGKPNVVTYNT 241
Query: 406 LTDAML---------------------------NSVLKALISVGRMGECNKILKAMEEGG 438
+ D++ N++L S+G++ E ++ K M
Sbjct: 242 IIDSLCKDRLVNEAVEFLSEMVDRGIPPDVVTYNTILHGFCSLGQLNEATRLFKEM---- 297
Query: 439 FIASSNMKSKIAFR-----LSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGD 493
+ + M + F L G EA + M G++ + +L+ G+C+
Sbjct: 298 -VGRNVMPDTVTFNILVDGLCKEGMVSEARCVSETMTEKGAEPNAYTYNALMDGYCLHNQ 356
Query: 494 LDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTY 553
+D+A M+ K G + + ++L+N YC R +A + + + E +L P TY
Sbjct: 357 MDEAIKVLGIMIGK-GCAPNLSSYNILINGYCKSKRMNEAKRLLSE-MSEKNLTPDTVTY 414
Query: 554 EELIKNLLVQRGFKDALSLLCLMKDHGFPP-------FVDPFIKYVSKSGTSDDAIAFLK 606
L++ L ++AL+L M G P +D F K+ G D+A+ LK
Sbjct: 415 STLMQGLCQVGRPREALNLFKEMCSSGLLPDLMAYSILLDGFCKH----GHLDEALKLLK 470
Query: 607 GMTSKRF-PSMSVVLCLFAAFFQARRHSEAQDLLSK 641
M +R P++ + L F A + A++L SK
Sbjct: 471 EMHERRIKPNIILYTILIRGMFIAGKLEVAKELFSK 506
Score = 47.0 bits (110), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 76/344 (22%), Positives = 124/344 (36%), Gaps = 51/344 (14%)
Query: 297 VKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAV 356
V D ++N + L +E + V + M KG E T ++ + N + EA+
Sbjct: 302 VMPDTVTFNILVDGLCKEGMVSEARCVSETMTEKGAEPNAYTYNALMDGYCLHNQMDEAI 361
Query: 357 DLYEFAMACKNKPSVNCCTFLLRKIVVSKQLD--MRLFSKVVRVFRENGNVLTDAMLNSV 414
+ + P+++ L+ SK+++ RL S++ N+ D + S
Sbjct: 362 KVLGIMIGKGCAPNLSSYNILINGYCKSKRMNEAKRLLSEM-----SEKNLTPDTVTYST 416
Query: 415 L-KALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASG 473
L + L VGR E + K M G + S + G DEA + + M
Sbjct: 417 LMQGLCQVGRPREALNLFKEMCSSGLLPDLMAYSILLDGFCKHGHLDEALKLLKEMHERR 476
Query: 474 SDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDA 533
++ LI+G +AG L+ A + F K+ S G D+
Sbjct: 477 IKPNIILYTILIRGMFIAGKLEVAKELFSKL------SADGIRPDI-------------- 516
Query: 534 CKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPP---FVDPFIK 590
W TY +IK LL + +A M+D GF P + I+
Sbjct: 517 ---------------W--TYNVMIKGLLKEGLSDEAYEFFRKMEDDGFLPDSCSYNVIIQ 559
Query: 591 YVSKSGTSDDAIAFLKGMTSKRFPSMSVVLCLFAAFFQARRHSE 634
++ S AI + M KRF + S F H E
Sbjct: 560 GFLQNQDSSTAIQLIDEMVGKRFSADSST---FQMLLDLESHDE 600
>gi|297839201|ref|XP_002887482.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297333323|gb|EFH63741.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 490
Score = 69.7 bits (169), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 81/388 (20%), Positives = 163/388 (42%), Gaps = 50/388 (12%)
Query: 252 DDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVL 311
DD+E+ L D V + +V ++ +L E K A FF WA H+ +YN M +L
Sbjct: 8 DDMEKALDDSVVDLTTPVVCKILQRLQYEEKTAFRFFTWAGHQEHYSHEPIAYNEMIDIL 67
Query: 312 GREDCIDRFWKVLDEM-----RSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACK 366
++ ++++ +M R+K + + +++L ++ ER + + +FA
Sbjct: 68 SSTKYKNKQFRIVIDMLDYMKRNKKTVVPADILLEILRKYCERYLTH----VQKFAKR-- 121
Query: 367 NKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGE 426
++I V Q ++ F N +L AL G + E
Sbjct: 122 ------------KRIRVKTQPEINAF-------------------NMLLDALCKCGLVKE 150
Query: 427 CNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIK 486
+L+ M + + + F +A + ++ M +G + + + I
Sbjct: 151 GEALLRRMRH-RVKPDATTFNVLFFGWCRVRDPKKAMKLLEEMIQAGHKPENFTYCAAID 209
Query: 487 GHCVAGDLDKAADCFQKMVEKEGTSHAGYA--IDLLVNTYCSKNRAIDACKFVHNCVREY 544
C AG +D+AAD F+ M+ K A A L++ ++A + + + +
Sbjct: 210 TFCQAGMVDEAADLFEFMITKGSVVSAPTAKTFALMIVALAKNDKAEECFELIGRMISTG 269
Query: 545 DLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFV---DPFIKYVSKSGTSDDA 601
L P +TY+++I+ + + ++A L M + G+PP + + F++ + ++ SD+A
Sbjct: 270 CL-PDVSTYKDVIEGMCMAGKVEEAYKFLDEMSNKGYPPDIVTYNCFLRVLCENRKSDEA 328
Query: 602 IAFLKGMTSKRF-PSMSVVLCLFAAFFQ 628
+ M R PS+ L + FF+
Sbjct: 329 LKLYGRMVESRCAPSVQTYNMLISMFFE 356
>gi|225434273|ref|XP_002276453.1| PREDICTED: pentatricopeptide repeat-containing protein At5g65560
[Vitis vinifera]
gi|296084392|emb|CBI24780.3| unnamed protein product [Vitis vinifera]
Length = 890
Score = 69.7 bits (169), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 66/312 (21%), Positives = 136/312 (43%), Gaps = 9/312 (2%)
Query: 283 KALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKV 342
+AL F +E G + + +Y + L +E+ +D K+L EM KG + T +
Sbjct: 317 EALNLFNEMKEKG-CEPNVHTYTVLIDGLCKENKMDEARKMLSEMSEKGLIPSVVTYNAL 375
Query: 343 LGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLD--MRLFSKVVRVFR 400
+ + + M+ +A ++ + + P+ L+ + +++ M L +K++ +
Sbjct: 376 IDGYCKEGMIDDAFEILDLMESNSCGPNTRTYNELICGLCKKRKVHKAMALLNKMLE-RK 434
Query: 401 ENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKD 460
+ +++T NS++ V + ++L M E G + S L G+ +
Sbjct: 435 LSPSLIT---YNSLIHGQCKVNDLESAYRLLSLMNENGLVPDQWTYSVFIDTLCKEGRVE 491
Query: 461 EANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLL 520
EA D ++A G + ++ +LI G+C G +D A ++M+ ++ Y ++L
Sbjct: 492 EAGTLFDSVKAKGVKANEVIYTALIDGYCKVGKIDVAYSLLERMLNDACLPNS-YTYNVL 550
Query: 521 VNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHG 580
+ C + + +A V + +KP TY LI +L F AL + M G
Sbjct: 551 IEGLCKEKKMKEASSLVAK-MLTMGVKPTVVTYTILIGEMLKDGAFDHALKVFNHMVSLG 609
Query: 581 FPPFVDPFIKYV 592
+ P V + ++
Sbjct: 610 YQPDVCTYTAFL 621
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 101/429 (23%), Positives = 172/429 (40%), Gaps = 47/429 (10%)
Query: 229 SIDNSIEKVASRICKVVRSDIWGD--DVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALI 286
S+D+ +++++ ++ W + + L L + + L F +D P+ AL
Sbjct: 32 SLDSEPVDLSAQLLSILSRPNWQKHPSLRKLLPSLTPSHVSSLFAFNLD-----PQTALS 86
Query: 287 FFRW-AEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYE--MEMETCVKVL 343
FF W A GF KH+ SY++M ++L R R V +++R + +E + VL
Sbjct: 87 FFNWIALRPGF-KHNVHSYSSMLNILIRA----RLLGVAEKIRISMIKSCCSIEDVLFVL 141
Query: 344 GRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRE-- 401
F + N E ++F KP++ C +L + SK L L ++ V+ E
Sbjct: 142 EVFRKMNADGE----FKF------KPTLRCYNTILMSL--SKFL---LIDEMKTVYLELL 186
Query: 402 ----NGNVLT-DAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSA 456
+ N+ T +AM+N K +G + E + + G + + +
Sbjct: 187 NNQISPNIYTFNAMVNGYCK----IGNVVEAELYASKIVQAGLHPDTFTYTSLILGHCRN 242
Query: 457 GKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYA 516
D A E M G + + +LI G C AG +++A F M E +
Sbjct: 243 KGVDNAYEVFLIMPQKGCQRNEVSYTNLIHGLCEAGRINEALKLFADMTE-DNCCPTVRT 301
Query: 517 IDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLM 576
+L+ R ++A N ++E +P TY LI L + +A +L M
Sbjct: 302 YTVLIYALSGSGRKVEALNLF-NEMKEKGCEPNVHTYTVLIDGLCKENKMDEARKMLSEM 360
Query: 577 KDHGFPPFV---DPFIKYVSKSGTSDDAIAFLKGMTSKRF-PSMSVVLCLFAAFFQARRH 632
+ G P V + I K G DDA L M S P+ L + R+
Sbjct: 361 SEKGLIPSVVTYNALIDGYCKEGMIDDAFEILDLMESNSCGPNTRTYNELICGLCKKRKV 420
Query: 633 SEAQDLLSK 641
+A LL+K
Sbjct: 421 HKAMALLNK 429
Score = 56.2 bits (134), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 45/190 (23%), Positives = 80/190 (42%), Gaps = 2/190 (1%)
Query: 394 KVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRL 453
+V + + G + +++ L GR+ E K+ M E + + + + L
Sbjct: 250 EVFLIMPQKGCQRNEVSYTNLIHGLCEAGRINEALKLFADMTEDNCCPTVRTYTVLIYAL 309
Query: 454 SSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHA 513
S +G+K EA + M+ G + + LI G C +D+A +M EK G +
Sbjct: 310 SGSGRKVEALNLFNEMKEKGCEPNVHTYTVLIDGLCKENKMDEARKMLSEMSEK-GLIPS 368
Query: 514 GYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLL 573
+ L++ YC + DA + + + + P TY ELI L +R A++LL
Sbjct: 369 VVTYNALIDGYCKEGMIDDAFEIL-DLMESNSCGPNTRTYNELICGLCKKRKVHKAMALL 427
Query: 574 CLMKDHGFPP 583
M + P
Sbjct: 428 NKMLERKLSP 437
Score = 50.1 bits (118), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 110/510 (21%), Positives = 203/510 (39%), Gaps = 61/510 (11%)
Query: 141 ESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASH 200
E+ DEAR+ + + EK S TYN ++ G++ + + ++D+M+ G +
Sbjct: 347 ENKMDEARKMLSEMSEK-GLIPSVVTYNALIDGYCKEGMIDDAFEILDLMESNSCGPNTR 405
Query: 201 VRNKMTEKFEKEGLESDLEKLKGIFATGSIDNSIEKVASRICKVVRSDIWG----DDVER 256
N++ K K K A ++ +E+ S S I G +D+E
Sbjct: 406 TYNELICGLCK--------KRKVHKAMALLNKMLERKLSPSLITYNSLIHGQCKVNDLES 457
Query: 257 QLRDLNVTFSNDLV------KFVVDKLGDEPK--KALIFFRWAEESGFVKHDESSYNAMA 308
R L++ N LV +D L E + +A F + G VK +E Y A+
Sbjct: 458 AYRLLSLMNENGLVPDQWTYSVFIDTLCKEGRVEEAGTLFDSVKAKG-VKANEVIYTALI 516
Query: 309 SVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNK 368
+ ID + +L+ M + T ++ + +KEA L + K
Sbjct: 517 DGYCKVGKIDVAYSLLERMLNDACLPNSYTYNVLIEGLCKEKKMKEASSLVAKMLTMGVK 576
Query: 369 PSVNCCTFLLRKIVVSKQLD--MRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGE 426
P+V T L+ +++ D +++F+ +V + + +V T + L A S G + E
Sbjct: 577 PTVVTYTILIGEMLKDGAFDHALKVFNHMVSLGYQ-PDVCT---YTAFLHAYFSQGMLEE 632
Query: 427 CNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIK 486
+ ++ M E G + + + + G A +F+ M +G + LIK
Sbjct: 633 VDDVIAKMNEEGILPDLVTYTVLIDGYARLGLTHRAFDFLKCMVDTGCKPSLYIVSILIK 692
Query: 487 G----------------HCVAGDLDK--AADCFQKMVEKEGTSHAGYAIDL-----LVNT 523
V+ L+ A F+KMVE G ID+ L+
Sbjct: 693 NLSHENRMKETRSEIGIDSVSNTLEYEIALKLFEKMVEH------GCTIDVSIYGALIAG 746
Query: 524 YCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPP 583
+C + R +A VH+ ++E + P Y L+ + +A+ L+ M ++G P
Sbjct: 747 FCQQERLEEAQGLVHH-MKERGMSPSEDIYNSLLDCCCKLGVYAEAVRLVDAMVENGLLP 805
Query: 584 FVDPFIKYVSK---SGTSDDAIAFLKGMTS 610
++ + V G+++ A A G+ S
Sbjct: 806 LLESYKLLVCGLYIEGSNEKAKAVFHGLLS 835
>gi|125537564|gb|EAY84052.1| hypothetical protein OsI_39281 [Oryza sativa Indica Group]
Length = 762
Score = 69.3 bits (168), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 123/560 (21%), Positives = 222/560 (39%), Gaps = 79/560 (14%)
Query: 66 YSRLINLIDPKNPNFRNP---MICSYSSEPAMEQKESDFT-------VVSDIFYKFSDVN 115
Y+ L+NL N N M SYS +P + + S+ + + Y S N
Sbjct: 141 YTELVNLKSTSNNGGTNQAPQMATSYSYQPLSDAQPSNIKSHNQHSLPEAKMPYNPSVQN 200
Query: 116 DISKQLELSGVVFTHE-------MVLKVLKNLESSPDEARRFFNWVLEKESERLSS---- 164
++ K + SG +++ MV +++ +R N+ S S+
Sbjct: 201 NLGKGVSRSGYAKSNQSFSGPPAMVANSPSQIKNQRHPGQRHTNY----HSNNFSTDARW 256
Query: 165 ---KTYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRNKMTEKFEKEGLESDLEKL 221
+T NL + G + L +K G G S++R+ + + E L+++
Sbjct: 257 DEVQTQNLSAPAMYT-GSGHKSQALAGTIKSHGGGPQSNLRSLKSLR-SVEQYYHTLQQM 314
Query: 222 KGIFATGSIDNSIEKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEP 281
K + TG + +++ CK+ + +N ++K + D
Sbjct: 315 KWVPMTGHVLDNLH------CKI-----------------DAFQANQVLKLLHDH----- 346
Query: 282 KKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVK 341
AL FF+W + KHD SY M +LG+ K+LDEM S + + T +
Sbjct: 347 TIALGFFQWLKRQPGFKHDGHSYTTMIGILGQARQFGTMRKLLDEMNSVHCKPTVVTYNR 406
Query: 342 VLGRFSERNMVKEAVDLYEFAMACKNKPS-VNCCTFL-LRKIVVSKQLDMRLFSKVVRVF 399
++ + N ++EAV ++E +P V CT + + ++ M L++++ V
Sbjct: 407 IIHAYGRANYLREAVKVFEEMQKAGYEPDRVTYCTLIDIHAKGGYLEVAMDLYTRMQEVG 466
Query: 400 RENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKS---KIAFRLSSA 456
AM+N + K G + K+ M E G + N+ + IA + +
Sbjct: 467 LSPDTFTYSAMVNCLGKG----GHLAAAYKLFCEMVENG--CTPNLVTYNIMIALQAKAR 520
Query: 457 GKKDEANEFMDHMEASGSDVGDKMWVSLIK---GHCVAGDLDKAADCFQKMVEKEGTSHA 513
++ + D M+ +G DK+ S++ GHC G LD+A F +M
Sbjct: 521 NYENVVKLYKD-MQVAGFRP-DKITYSIVMEVLGHC--GHLDEAEAVFIEMRHDWAPDEP 576
Query: 514 GYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLL 573
Y LLV+ + A + H +++ L+P T L+ L F+DA S+L
Sbjct: 577 VYG--LLVDLWGKAGNVDKALGWYHAMLQD-GLQPNVPTCNSLLSAFLKINRFQDAYSVL 633
Query: 574 CLMKDHGFPPFVDPFIKYVS 593
M G P + + +S
Sbjct: 634 QNMLAQGLVPSLQTYTLLLS 653
>gi|224107773|ref|XP_002333469.1| predicted protein [Populus trichocarpa]
gi|222836989|gb|EEE75382.1| predicted protein [Populus trichocarpa]
Length = 1048
Score = 69.3 bits (168), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 83/396 (20%), Positives = 168/396 (42%), Gaps = 15/396 (3%)
Query: 254 VERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRW-AEESGFVKHDESSYNAMASVLG 312
++ L + F+ +LV + G AL FF W +++GF + E +YN V G
Sbjct: 649 IQDALEKCTIQFTPELVAETLRNCGMHGNAALHFFAWVGKQNGFCQTTE-TYNMAMKVSG 707
Query: 313 REDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVN 372
R + EMR +G+ + +T ++ ++ + + A+ ++ A P+ +
Sbjct: 708 RGKDFKHMRSLFYEMRRRGFLIPPDTWAIMIMQYGRTGLTEIALKIFGEMKASGCNPNDS 767
Query: 373 CCTFLLRKIVVSKQLDMRLFSKVVRVFRE---NGNVLTDAMLNSVLKALISVGRMGECNK 429
+L+ + K R + +++FRE G+V ++ + L L VG++ E K
Sbjct: 768 TYKYLIIFLCGRKG---RKVDEAIKIFREMIRAGHVPDKELVGTYLCCLCEVGKLLEARK 824
Query: 430 ILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHC 489
+ ++ + GF ++ I L AG +EA +D + + + SL+ G
Sbjct: 825 SVDSLCKAGFTVPASYSLYIR-ALCRAGMLEEALSLVDQVSTEKTTLDRYTHASLVHGLL 883
Query: 490 VAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPW 549
G L++A M ++ G + + L+ + + A A + + +++ +P
Sbjct: 884 QKGRLEEALAKVDSM-KQVGINPTVHVYTSLIVHFFREKLASKALE-IFESMKQEGCEPT 941
Query: 550 HTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPFIKYVS---KSGTSDDAIAFLK 606
TY LI+ + +A ++ +K G P + ++S ++G S++A+ L
Sbjct: 942 IVTYSALIRGYMDTENVIEAWNVFHSLKTKGPAPDFKTYSMFLSCLCRAGKSEEALQLLS 1001
Query: 607 GMTSKRF-PSMSVVLCLFAAFFQARRHSEAQDLLSK 641
M PS +F + + S AQ +L K
Sbjct: 1002 DMVDNGIVPSNVNFRTVFFGLNREGKQSLAQTVLQK 1037
Score = 56.2 bits (134), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 86/458 (18%), Positives = 181/458 (39%), Gaps = 59/458 (12%)
Query: 208 KFEKEG------LESDLEKLKGIFATGSI------DNSIEKVASRICKVVRSDIWGDDVE 255
K+ +EG L + L+K + A G I + + V I +VR++ +E
Sbjct: 99 KYREEGVCGNAELNNGLQKEGSLLAFGDIKVGALNETDVSAVVHEITGIVRAENCTASME 158
Query: 256 RQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGRED 315
+L + ++V+ V+ + P A FF W + H +YN M G
Sbjct: 159 ERLDKVGFQLEPEIVEKVLKRCYKVPHLAYRFFNWVKTKDGFCHTTKTYNTMLYTAGEAR 218
Query: 316 CIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCT 375
+L+EM E +++T ++ ++ + ++ +A+ ++E +P V
Sbjct: 219 EFSVVDVLLEEMEKYSCERDIKTWTILIRQYGKAKLIGKALLVHEKMRKSGCEPDVEVYE 278
Query: 376 FLLRKIVVS--KQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKA 433
L + + ++ + ++ ++V+ E L +LN + K+ G + +
Sbjct: 279 VTLHSLCDAGKGEIALEIYKEMVQREMEPNLSLYKMLLNCLAKS----GDVSAVQSVADD 334
Query: 434 MEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGD 493
M I ++ + AG+ EA E + ++ + ++ +L+KG A
Sbjct: 335 MIRVSQIPEHDVHVCVLKSYCVAGRIREALELIRDLKNKEIQLDYEVSETLVKGLSRANR 394
Query: 494 LDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTY 553
+ A + + M K+ Y I ++N Y +N A + ++E+ P +TY
Sbjct: 395 IADALEIVEIMKRKDFVDGKVYGI--IINGYLRRNELSKALDLFQS-MKEFGHLPTTSTY 451
Query: 554 EELIKNL---------------LVQRGFK-DALSLLCL-------------------MKD 578
EL+++L +++RG + D+++++ + M+D
Sbjct: 452 TELMQHLFRSNEYQKCCELYDEMLERGVEIDSVAVMAIVAGHVRQDHISEAWEVFETMED 511
Query: 579 HGFPPF---VDPFIKYVSKSGTSDDAIAFLKGMTSKRF 613
G P FIK + K +D+ I L M + +
Sbjct: 512 KGIKPTWKSYSIFIKELCKVSRTDEIIKVLGKMQASKM 549
Score = 46.6 bits (109), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 96/420 (22%), Positives = 165/420 (39%), Gaps = 64/420 (15%)
Query: 117 ISKQLELSGVVFTHEMVLKVLKNLESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVGV 176
+ ++L+ G E+V KVLK P A RFFNWV K+ ++KTYN ML G
Sbjct: 157 MEERLDKVGFQLEPEIVEKVLKRCYKVPHLAYRFFNWVKTKDGFCHTTKTYNTMLYTAGE 216
Query: 177 HGLVQEFWGLVDVMKK------------------KGYGVASHVRNKMT--EKFEKEGLES 216
+EF +VDV+ + + YG A + + EK K G E
Sbjct: 217 ---AREF-SVVDVLLEEMEKYSCERDIKTWTILIRQYGKAKLIGKALLVHEKMRKSGCEP 272
Query: 217 DLE----KLKGIFATGSIDNSIEKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKF 272
D+E L + G + ++E I+ + V+R++ + N++ L+
Sbjct: 273 DVEVYEVTLHSLCDAGKGEIALE-------------IYKEMVQREM-EPNLSLYKMLLNC 318
Query: 273 VVDKLGDEPKKALIFFRWAEESGFVKHDE-----SSYNAMASVLGREDCIDRFWKVLDEM 327
+ K GD + S +HD SY V GR I +++ ++
Sbjct: 319 LA-KSGDVSAVQSVADDMIRVSQIPEHDVHVCVLKSY----CVAGR---IREALELIRDL 370
Query: 328 RSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQL 387
++K +++ E ++ S N + +A+++ E K K V+ + I+++ L
Sbjct: 371 KNKEIQLDYEVSETLVKGLSRANRIADALEIVEIM---KRKDFVDGKVY---GIIINGYL 424
Query: 388 DMRLFSKVVRVF---RENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSN 444
SK + +F +E G++ T + +++ L +C ++ M E G S
Sbjct: 425 RRNELSKALDLFQSMKEFGHLPTTSTYTELMQHLFRSNEYQKCCELYDEMLERGVEIDSV 484
Query: 445 MKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKM 504
I EA E + ME G K + IK C D+ KM
Sbjct: 485 AVMAIVAGHVRQDHISEAWEVFETMEDKGIKPTWKSYSIFIKELCKVSRTDEIIKVLGKM 544
Score = 43.9 bits (102), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 52/117 (44%)
Query: 98 ESDFTVVSDIFYKFSDVNDISKQLELSGVVFTHEMVLKVLKNLESSPDEARRFFNWVLEK 157
E D V I D I LE + FT E+V + L+N + A FF WV ++
Sbjct: 630 EQDLQEVLRILSSLEDWPIIQDALEKCTIQFTPELVAETLRNCGMHGNAALHFFAWVGKQ 689
Query: 158 ESERLSSKTYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRNKMTEKFEKEGL 214
+++TYN+ +++ G + L M+++G+ + M ++ + GL
Sbjct: 690 NGFCQTTETYNMAMKVSGRGKDFKHMRSLFYEMRRRGFLIPPDTWAIMIMQYGRTGL 746
>gi|225451367|ref|XP_002263590.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g09680 [Vitis vinifera]
gi|296087085|emb|CBI33459.3| unnamed protein product [Vitis vinifera]
Length = 592
Score = 69.3 bits (168), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 115/541 (21%), Positives = 207/541 (38%), Gaps = 39/541 (7%)
Query: 81 RNPMIC--SYSSEPAMEQKESDFTVVSDIFYKFSDVNDISKQLE--LSGVVFTHEMVLKV 136
R +C ++ + P + T +S+ K S + L+ L + H + L
Sbjct: 17 RGGFLCFSTWMTPPTSHCHDPILTTISEAI-KVSPTKPLHSSLKRILPSLTPNHLIDLIN 75
Query: 137 LKNLESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLVD-VMKKKGY 195
L SP FF W+ + RLS +Y M + H ++ E L+ V+ +KG
Sbjct: 76 LNPHSLSPPSLLSFFKWLSTQHHFRLSIHSYCTMTHFLCTHKMLSEAQSLLQFVVSRKGK 135
Query: 196 GVASHVRNKMTEKFEKEGL-ESDLEKLKGIFATGSIDNSIEKVASRICKVVRSDIWGDDV 254
AS V T E G +S+L + + D+ A + ++VR
Sbjct: 136 NSASSV---FTSVLEARGTHQSNL--VFSVLMNAYTDSGYFSDAIQCFRLVRK------- 183
Query: 255 ERQLRDLNVTFSNDLVKFVVDKLG--DEPKKALIFFRWAEESGFVKHDESSYNAMASVLG 312
+L + F + ++ D+L + A F+ + G+ D +N + L
Sbjct: 184 ----HNLQIPFHS--CGYLFDRLMKLNLTSPAWAFYEEILDCGYPP-DVCKFNVLMHRLC 236
Query: 313 REDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVN 372
+E I+ + E+ +G + + ++ + + + + L F M + P V
Sbjct: 237 KEHKINEAQLLFGEIGKRGLRPTVVSFNTLINGYCKSGNLDQGFRLKRFMMENRVFPDVF 296
Query: 373 CCTFLLRKIVVSKQLD--MRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKI 430
+ L+ + QLD +LF ++ + G V D +++ GR +I
Sbjct: 297 TYSVLINGLCKEGQLDDANKLFLEMC----DRGLVPNDVTFTTLINGHCVTGRADLGMEI 352
Query: 431 LKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCV 490
+ M G + + L G EA + + M G + LI G C
Sbjct: 353 YQQMLRKGVKPDVITYNTLINGLCKVGDLREAKKLVIEMTQRGLKPDKFTYTMLIDGCCK 412
Query: 491 AGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWH 550
GDL+ A + ++MV KEG A L++ +C + + I+A + + + E +KP
Sbjct: 413 EGDLESALEIRKEMV-KEGIELDNVAFTALISGFCREGQVIEAERTLREML-EAGIKPDD 470
Query: 551 TTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFV---DPFIKYVSKSGTSDDAIAFLKG 607
TY +I + K LL M+ G P V + + + K G +A L
Sbjct: 471 ATYTMVIHGFCKKGDVKTGFKLLKEMQCDGHVPGVVTYNVLLNGLCKQGQMKNANMLLDA 530
Query: 608 M 608
M
Sbjct: 531 M 531
>gi|255660928|gb|ACU25633.1| pentatricopeptide repeat-containing protein [Pitraea cuneato-ovata]
Length = 481
Score = 69.3 bits (168), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 81/362 (22%), Positives = 147/362 (40%), Gaps = 44/362 (12%)
Query: 258 LRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCI 317
+R+L +F ++LV V+ + AL FFRW E S +H+ ++ + +LGR +
Sbjct: 3 IRNLVPSFDHELVYNVLHG-AKNAEHALQFFRWVERSNLFEHNRETHLKIIEILGRASKL 61
Query: 318 DRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFL 377
+ +L +M KG E + + V ++ + + +V+E+V
Sbjct: 62 NHARCILLDMPKKGLEWDEDMWVLMIDSYGKEGIVQESV--------------------- 100
Query: 378 LRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEG 437
+LF K+ E G T +++ K + GR + M
Sbjct: 101 ------------KLFQKM----EELGVERTIKSYDALFKVISRRGRYMMSKRYFNKMVNE 144
Query: 438 GFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKA 497
G + + + + + +GK + AN F + +++ + ++I G+ +++A
Sbjct: 145 GIEPTRHTFNVLIWGFFLSGKVETANRFFEDLKSREITPDVVTYNTMINGYTRVKKMEEA 204
Query: 498 ADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELI 557
F +M EK+ L+ Y S +R DA + V ++ +KP TY L+
Sbjct: 205 EKYFLEMKEKK-IDPTVVTYTTLIKGYASIDRVDDALRLVEE-MKGLGIKPNAITYSTLL 262
Query: 558 KNLLVQRGFKDALSLLCLMKDHGFPPFVDP-FIKYVS---KSGTSDDAIAFLKGMTSKRF 613
L +A SLL M D P + FI+ +S K+G D A LK M
Sbjct: 263 PGLCDAEKMSEARSLLKEMVDKYIAPKDNSIFIRLISSQCKAGNLDAAADVLKAMIRLSI 322
Query: 614 PS 615
P+
Sbjct: 323 PT 324
Score = 50.8 bits (120), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 109/499 (21%), Positives = 195/499 (39%), Gaps = 83/499 (16%)
Query: 128 FTHEMVLKVLKNLESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLV 187
F HE+V VL +++ + A +FF WV + +T+ ++ I+G + ++
Sbjct: 10 FDHELVYNVLHGAKNA-EHALQFFRWVERSNLFEHNRETHLKIIEILGRASKLNHARCIL 68
Query: 188 DVMKKKGYGVASHVRNKMTEKFEKEGLESDLEKL------KGIFATGSIDNSIEKVASRI 241
M KKG + M + + KEG+ + KL G+ T +++ KV SR
Sbjct: 69 LDMPKKGLEWDEDMWVLMIDSYGKEGIVQESVKLFQKMEELGVERTIKSYDALFKVISRR 128
Query: 242 CKVVRSDIWGDD-VERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHD 300
+ + S + + V + TF+ + F L + + A FF +S + D
Sbjct: 129 GRYMMSKRYFNKMVNEGIEPTRHTFNVLIWGFF---LSGKVETANRFFE-DLKSREITPD 184
Query: 301 ESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYE 360
+YN M + R ++ K EM+ K + + T ++ ++ + V +A+ L E
Sbjct: 185 VVTYNTMINGYTRVKKMEEAEKYFLEMKEKKIDPTVVTYTTLIKGYASIDRVDDALRLVE 244
Query: 361 FAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALIS 420
KP N T+ +++L L
Sbjct: 245 EMKGLGIKP--NAITY-----------------------------------STLLPGLCD 267
Query: 421 VGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSS----AGKKDEANEFMDHMEASGSDV 476
+M E +LK M + +IA + + I RL S AG D A + + M
Sbjct: 268 AEKMSEARSLLKEMVDK-YIAPKD--NSIFIRLISSQCKAGNLDAAADVLKAMIRLSIPT 324
Query: 477 GDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKF 536
+ LI+ +C AG D+A F K++EK D+++ + + A
Sbjct: 325 EAGHYGVLIENYCKAGKYDQAVKLFDKLIEK----------DIILRPQSTLHMEPSA--- 371
Query: 537 VHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPFIKYVSKSG 596
+N + EY T E + L++ G +D++SL L++ H S+ G
Sbjct: 372 -YNPLIEYLCNNGQTGKAETLVRQLMKLGVQDSISLNTLIRGH-------------SQEG 417
Query: 597 TSDDAIAFLKGMTSKRFPS 615
+ D A LK M ++ S
Sbjct: 418 SPDSAFEILKIMLRRKVDS 436
>gi|302809105|ref|XP_002986246.1| hypothetical protein SELMODRAFT_123660 [Selaginella moellendorffii]
gi|300146105|gb|EFJ12777.1| hypothetical protein SELMODRAFT_123660 [Selaginella moellendorffii]
Length = 725
Score = 69.3 bits (168), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 72/315 (22%), Positives = 136/315 (43%), Gaps = 8/315 (2%)
Query: 300 DESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLY 359
D SY + + L + D +D +V+D+M +G + + T ++ F + AV+L
Sbjct: 113 DVVSYTTVINGLCKLDQVDEACRVMDKMIQRGCQPNVITYGTLVDGFCRVGDLDGAVELV 172
Query: 360 EFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAML-NSVLKAL 418
+P+ ++ + ++LD L ++ + E+G+ D ++++ +L
Sbjct: 173 RKMTERGYRPNAITYNNIMHGLCSGRKLDSAL--QLFKEMEESGSCPPDVFTYSTIVDSL 230
Query: 419 ISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGD 478
+ G++ + ++++AM G + S + L AGK DEA + M SG
Sbjct: 231 VKSGKVDDACRLVEAMVSKGCSPNVVTYSSLLHGLCKAGKLDEATALLQRMTRSGCSPNI 290
Query: 479 KMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVH 538
+ ++I GHC G +D+A ++MV+ G +L++ +C +A DA V
Sbjct: 291 VTYNTIIDGHCKLGRIDEAYHLLEEMVDG-GCQPNVVTYTVLLDAFCKCGKAEDAIGLVE 349
Query: 539 NCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFV---DPFIKYVSKS 595
V E P TY L+ + + A LL M G P V + I + K+
Sbjct: 350 VMV-EKGYVPNLFTYNSLLDMFCKKDEVERACQLLSSMIQKGCVPNVVSYNTVIAGLCKA 408
Query: 596 GTSDDAIAFLKGMTS 610
+ + L+ M S
Sbjct: 409 TKVHEGVLLLEQMLS 423
Score = 68.6 bits (166), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 92/364 (25%), Positives = 151/364 (41%), Gaps = 15/364 (4%)
Query: 284 ALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVL 343
A++ FR E S D +YN M + L + D +D ++L+EM G+ + + VL
Sbjct: 29 AVLHFR--EMSKTCPPDSVTYNTMINGLSKSDRLDDAIRLLEEMVDNGFAPNVFSYNTVL 86
Query: 344 GRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLD--MRLFSKVVRVFRE 401
F + N V+ A+ L E + P V T ++ + Q+D R+ K+++ +
Sbjct: 87 HGFCKANRVENALWLLEQMVMRGCPPDVVSYTTVINGLCKLDQVDEACRVMDKMIQRGCQ 146
Query: 402 NGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDE 461
NV+T +++ VG + ++++ M E G+ ++ + I L S K D
Sbjct: 147 P-NVIT---YGTLVDGFCRVGDLDGAVELVRKMTERGYRPNAITYNNIMHGLCSGRKLDS 202
Query: 462 ANEFMDHMEASGSDVGDKMWVSLIKGHCV-AGDLDKAADCFQKMVEKEGTSHAGYAIDLL 520
A + ME SGS D S I V +G +D A + MV K G S L
Sbjct: 203 ALQLFKEMEESGSCPPDVFTYSTIVDSLVKSGKVDDACRLVEAMVSK-GCSPNVVTYSSL 261
Query: 521 VNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHG 580
++ C + +A + R P TY +I +A LL M D G
Sbjct: 262 LHGLCKAGKLDEATALLQRMTRS-GCSPNIVTYNTIIDGHCKLGRIDEAYHLLEEMVDGG 320
Query: 581 FPPFVDPF---IKYVSKSGTSDDAIAFLKGMTSKRF-PSMSVVLCLFAAFFQARRHSEAQ 636
P V + + K G ++DAI ++ M K + P++ L F + A
Sbjct: 321 CQPNVVTYTVLLDAFCKCGKAEDAIGLVEVMVEKGYVPNLFTYNSLLDMFCKKDEVERAC 380
Query: 637 DLLS 640
LLS
Sbjct: 381 QLLS 384
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 77/334 (23%), Positives = 141/334 (42%), Gaps = 12/334 (3%)
Query: 311 LGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPS 370
LGR ID + +L+EM G + + T +L F + ++A+ L E + P+
Sbjct: 303 LGR---IDEAYHLLEEMVDGGCQPNVVTYTVLLDAFCKCGKAEDAIGLVEVMVEKGYVPN 359
Query: 371 VNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKI 430
+ LL + K+ ++ +++ + G V N+V+ L ++ E +
Sbjct: 360 LFTYNSLLD--MFCKKDEVERACQLLSSMIQKGCVPNVVSYNTVIAGLCKATKVHEGVLL 417
Query: 431 LKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCV 490
L+ M + + I + + D A E + ++ SG + SL+ G C
Sbjct: 418 LEQMLSNNCVPDIVTFNTIIDAMCKTYRVDIAYELFNLIQESGCTPNLVTYNSLVHGLCK 477
Query: 491 AGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWH 550
+ D+A ++M K+G S + +++ C R A K + + L P
Sbjct: 478 SRRFDQAEYLLREMTRKQGCSPDIITYNTVIDGLCKSKRVDRAYKLFLQMLSD-GLAPDD 536
Query: 551 TTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPF---IKYVSKSGTSDDAIAFLKG 607
TY +I +L R +A ++L LM +GF P + I K+G D A+ L+
Sbjct: 537 VTYSIVISSLCKWRFMDEANNVLELMLKNGFDPGAITYGTLIDGFCKTGNLDKALEILQL 596
Query: 608 MTSK-RFPSMSVVLCLFAAFFQAR-RHSEAQDLL 639
+ SK +P + V +F + R R +A +LL
Sbjct: 597 LLSKGSYPDV-VTFSIFIDWLSKRGRLRQAGELL 629
Score = 52.4 bits (124), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 67/307 (21%), Positives = 124/307 (40%), Gaps = 8/307 (2%)
Query: 279 DEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMET 338
DE ++A + G V + SYN + + L + + +L++M S ++ T
Sbjct: 374 DEVERACQLLSSMIQKGCVP-NVVSYNTVIAGLCKATKVHEGVLLLEQMLSNNCVPDIVT 432
Query: 339 CVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMR--LFSKVV 396
++ + V A +L+ P++ L+ + S++ D L ++
Sbjct: 433 FNTIIDAMCKTYRVDIAYELFNLIQESGCTPNLVTYNSLVHGLCKSRRFDQAEYLLREMT 492
Query: 397 RVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSA 456
R + +++T N+V+ L R+ K+ M G S + L
Sbjct: 493 RKQGCSPDIIT---YNTVIDGLCKSKRVDRAYKLFLQMLSDGLAPDDVTYSIVISSLCKW 549
Query: 457 GKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYA 516
DEAN ++ M +G D G + +LI G C G+LDKA + Q ++ K G+
Sbjct: 550 RFMDEANNVLELMLKNGFDPGAITYGTLIDGFCKTGNLDKALEILQLLLSK-GSYPDVVT 608
Query: 517 IDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLM 576
+ ++ + R A + + +R L P TY L+K +DA+ L +M
Sbjct: 609 FSIFIDWLSKRGRLRQAGELLETMLRA-GLVPDTVTYNTLLKGFCDASRTEDAVDLFEVM 667
Query: 577 KDHGFPP 583
+ G P
Sbjct: 668 RQCGCEP 674
Score = 49.3 bits (116), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 91/429 (21%), Positives = 168/429 (39%), Gaps = 60/429 (13%)
Query: 166 TYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRNKMTEKF-EKEGLESDLEKLKGI 224
TY ++L G ++ GLV+VM +KGY N + + F +K+ +E + L +
Sbjct: 327 TYTVLLDAFCKCGKAEDAIGLVEVMVEKGYVPNLFTYNSLLDMFCKKDEVERACQLLSSM 386
Query: 225 FATGSIDN--SIEKVASRICKVVRSDIWGDDVERQLRDLNVTFSN----DLVKF--VVDK 276
G + N S V + +CK + V + L SN D+V F ++D
Sbjct: 387 IQKGCVPNVVSYNTVIAGLCKATK-------VHEGVLLLEQMLSNNCVPDIVTFNTIIDA 439
Query: 277 LGDEPKKALIF--FRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEM-RSKGYE 333
+ + + + F +ESG + +YN++ L + D+ +L EM R +G
Sbjct: 440 MCKTYRVDIAYELFNLIQESGCTP-NLVTYNSLVHGLCKSRRFDQAEYLLREMTRKQGCS 498
Query: 334 MEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFS 393
++ T V+ + V A L+ +++ S
Sbjct: 499 PDIITYNTVIDGLCKSKRVDRAYKLF-----------------------------LQMLS 529
Query: 394 KVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRL 453
+G D + V+ +L M E N +L+ M + GF + +
Sbjct: 530 --------DGLAPDDVTYSIVISSLCKWRFMDEANNVLELMLKNGFDPGAITYGTLIDGF 581
Query: 454 SSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHA 513
G D+A E + + + GS + I G L +A + + M+ + G
Sbjct: 582 CKTGNLDKALEILQLLLSKGSYPDVVTFSIFIDWLSKRGRLRQAGELLETML-RAGLVPD 640
Query: 514 GYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLL 573
+ L+ +C +R DA +R+ +P + TY L+ +L+ ++ +KD L+ +
Sbjct: 641 TVTYNTLLKGFCDASRTEDAVDLFE-VMRQCGCEPDNATYTTLVGHLVDKKSYKDLLAEV 699
Query: 574 C-LMKDHGF 581
M D GF
Sbjct: 700 SKSMVDTGF 708
>gi|255660924|gb|ACU25631.1| pentatricopeptide repeat-containing protein [Lampayo castellani]
Length = 484
Score = 69.3 bits (168), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 85/389 (21%), Positives = 159/389 (40%), Gaps = 45/389 (11%)
Query: 258 LRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCI 317
+R+L +F ++LV V+ + AL FFRW E S +H+ ++ + +LGR +
Sbjct: 3 IRNLVPSFDHELVYNVLHG-AKNSEHALQFFRWVERSNLFEHNRETHLKIIEILGRASKL 61
Query: 318 DRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFL 377
+ +L +M KG E + + V ++ + + +V+E+V
Sbjct: 62 NHARCILLDMPKKGLEWDEDMWVLMIDSYGKEGIVQESV--------------------- 100
Query: 378 LRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEG 437
+LF K+ E G T +++ K ++ GR + M
Sbjct: 101 ------------KLFQKM----EELGVERTIKSYDALFKVIMRRGRFMMAKRYFNKMLSX 144
Query: 438 GFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKA 497
G + + + + + +GK + AN F + M++ + ++I G+ +++A
Sbjct: 145 GIEPTRHTFNVMIWGFFLSGKVETANRFFEDMKSREISPDVITYNTMINGYYRVKKMEEA 204
Query: 498 ADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELI 557
F +M K L+ Y S ++ DA + V ++ Y +KP TY L+
Sbjct: 205 EKYFVEMKGK-NIEPTVVTYTTLIKGYVSVDQVDDALRLVEE-MKGYGIKPNAITYSTLL 262
Query: 558 KNLLVQRGFKDALSLLCLMKDHGFPPFVDP-FIKYVS---KSGTSDDAIAFLKGMTSKRF 613
L +A S+L M D P + F++ +S K+G D A LK M
Sbjct: 263 PGLCNAEKMSEARSILKEMVDKYIAPTDNSIFMRLISSQCKAGNLDAAADVLKSMIRLSV 322
Query: 614 PSMSVVL-CLFAAFFQARRHSEAQDLLSK 641
P+ + L + +A ++ +A LL K
Sbjct: 323 PTEAGHYGVLIENYCKAGQYDQAVKLLDK 351
Score = 55.5 bits (132), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 109/498 (21%), Positives = 206/498 (41%), Gaps = 81/498 (16%)
Query: 128 FTHEMVLKVLKNLESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLV 187
F HE+V VL ++S + A +FF WV + +T+ ++ I+G + ++
Sbjct: 10 FDHELVYNVLHGAKNS-EHALQFFRWVERSNLFEHNRETHLKIIEILGRASKLNHARCIL 68
Query: 188 DVMKKKGYGVASHVRNKMTEKFEKEGLESDLEKLKGIFATGSIDNSIEKVASRICKVVRS 247
M KKG + M + + KEG+ + KL +E++
Sbjct: 69 LDMPKKGLEWDEDMWVLMIDSYGKEGIVQESVKLF---------QKMEELG--------- 110
Query: 248 DIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEE--SGFVKHDESSYN 305
VER ++ + F V+ + G + ++ R+ + S ++ ++N
Sbjct: 111 ------VERTIKSYDALFK------VIMRRG----RFMMAKRYFNKMLSXGIEPTRHTFN 154
Query: 306 AMA---SVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFA 362
M + G+ + +RF+ ++M+S+ ++ T ++ + ++EA + Y
Sbjct: 155 VMIWGFFLSGKVETANRFF---EDMKSREISPDVITYNTMINGYYRVKKMEEA-EKYFVE 210
Query: 363 MACKN-KPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISV 421
M KN +P+V T L++ V Q+D L ++V + G +++L L +
Sbjct: 211 MKGKNIEPTVVTYTTLIKGYVSVDQVDDAL--RLVEEMKGYGIKPNAITYSTLLPGLCNA 268
Query: 422 GRMGECNKILKAMEEGGFIASSNMKSKIAFRLSS----AGKKDEANEFMDHMEASGSDVG 477
+M E ILK M + +IA ++ + I RL S AG D A + + M
Sbjct: 269 EKMSEARSILKEMVDK-YIAPTD--NSIFMRLISSQCKAGNLDAAADVLKSMIRLSVPTE 325
Query: 478 DKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFV 537
+ LI+ +C AG D+A K++EK D++V + + A
Sbjct: 326 AGHYGVLIENYCKAGQYDQAVKLLDKLIEK----------DIIVRPQSTLHMEPSA---- 371
Query: 538 HNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPFIKYVSKSGT 597
+N + EY T+ E + L++ G +D +L L++ H S+ G+
Sbjct: 372 YNPIVEYLCNNGQTSKAEALVRQLMKLGVQDPTALNTLIRGH-------------SQEGS 418
Query: 598 SDDAIAFLKGMTSKRFPS 615
D A LK M ++ S
Sbjct: 419 PDSAFELLKIMLRRKVGS 436
>gi|224088126|ref|XP_002308333.1| predicted protein [Populus trichocarpa]
gi|222854309|gb|EEE91856.1| predicted protein [Populus trichocarpa]
Length = 1048
Score = 69.3 bits (168), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 83/396 (20%), Positives = 168/396 (42%), Gaps = 15/396 (3%)
Query: 254 VERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRW-AEESGFVKHDESSYNAMASVLG 312
++ L + F+ +LV + G AL FF W +++GF + E +YN V G
Sbjct: 649 IQDALEKCTIQFTPELVAETLRNCGMHGNAALHFFAWVGKQNGFCQTTE-TYNMAMKVSG 707
Query: 313 REDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVN 372
R + EMR +G+ + +T ++ ++ + + A+ ++ A P+ +
Sbjct: 708 RGKDFKHMRSLFYEMRRRGFLIPPDTWAIMIMQYGRTGLTEIALKIFGEMKASGCNPNDS 767
Query: 373 CCTFLLRKIVVSKQLDMRLFSKVVRVFRE---NGNVLTDAMLNSVLKALISVGRMGECNK 429
+L+ + K R + +++FRE G+V ++ + L L VG++ E K
Sbjct: 768 TYKYLIIFLCGRKG---RKVDEAIKIFREMIRAGHVPDKELVGTYLCCLCEVGKLLEARK 824
Query: 430 ILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHC 489
+ ++ + GF ++ I L AG +EA +D + + + SL+ G
Sbjct: 825 SVDSLCKAGFTVPASYSLYIR-ALCRAGMLEEALSLVDQVSTEKTTLDRYTHASLVHGLL 883
Query: 490 VAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPW 549
G L++A M ++ G + + L+ + + A A + + +++ +P
Sbjct: 884 QKGRLEEALAKVDSM-KQVGINPTVHVYTSLIVHFFREKLASKALE-IFESMKQEGCEPT 941
Query: 550 HTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPFIKYVS---KSGTSDDAIAFLK 606
TY LI+ + +A ++ +K G P + ++S ++G S++A+ L
Sbjct: 942 IVTYSALIRGYMDTENVIEAWNVFHSLKTKGPAPDFKTYSMFLSCLCRAGKSEEALQLLS 1001
Query: 607 GMTSKRF-PSMSVVLCLFAAFFQARRHSEAQDLLSK 641
M PS +F + + S AQ +L K
Sbjct: 1002 DMVDNGIVPSNVNFRTVFFGLNREGKQSLAQTVLQK 1037
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 75/387 (19%), Positives = 156/387 (40%), Gaps = 21/387 (5%)
Query: 208 KFEKEG------LESDLEKLKGIFATGSI------DNSIEKVASRICKVVRSDIWGDDVE 255
K+ +EG L + L+K + A G I + + V I +VR++ +E
Sbjct: 99 KYREEGVCGNAELNNGLQKEGSLLAFGDIKVGALNETDVSAVVHEITGIVRAENCTASME 158
Query: 256 RQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGRED 315
+L + ++V+ V+ + P A FF W + H +YN M G
Sbjct: 159 ERLDKVGFQLEPEIVEKVLKRCYKVPHLAYRFFNWVKTKDGFCHTTKTYNTMLYTAGEAR 218
Query: 316 CIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCT 375
+L+EM E +++T ++ ++ + +V +A+ ++E +P V
Sbjct: 219 EFSVVDVLLEEMEKYSCERDIKTWTILIQQYGKAKLVGKALLVHEKMRKSGCEPDVEVYE 278
Query: 376 FLLRKIVVS--KQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKA 433
L + + ++ + ++ ++V+ E L +LN + K+ G + +
Sbjct: 279 VTLHSLCDAGKGEIALEIYKEMVQREMEPNLSLYKMLLNCLAKS----GDVSAVQSVADD 334
Query: 434 MEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGD 493
M I ++ + AG+ EA E + ++ + ++ +L+KG A
Sbjct: 335 MIRVSQIPEHDVHVCVLKSYCVAGRIREALELIRDLKNKEIQLDYEVSETLVKGLSRANR 394
Query: 494 LDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTY 553
+ A + + M K+ Y I ++N Y +N A + ++E+ P +TY
Sbjct: 395 IADALEIVEIMKRKDFVDGKVYGI--IINGYLRRNELSKALDLFQS-MKEFGHLPTTSTY 451
Query: 554 EELIKNLLVQRGFKDALSLLCLMKDHG 580
EL+++L ++ L M + G
Sbjct: 452 TELMQHLFRSNEYQKCCELYDEMLERG 478
Score = 45.1 bits (105), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 97/420 (23%), Positives = 165/420 (39%), Gaps = 64/420 (15%)
Query: 117 ISKQLELSGVVFTHEMVLKVLKNLESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVGV 176
+ ++L+ G E+V KVLK P A RFFNWV K+ ++KTYN ML G
Sbjct: 157 MEERLDKVGFQLEPEIVEKVLKRCYKVPHLAYRFFNWVKTKDGFCHTTKTYNTMLYTAGE 216
Query: 177 HGLVQEFWGLVDVMKK------------------KGYGVASHVRNKMT--EKFEKEGLES 216
+EF +VDV+ + + YG A V + EK K G E
Sbjct: 217 ---AREF-SVVDVLLEEMEKYSCERDIKTWTILIQQYGKAKLVGKALLVHEKMRKSGCEP 272
Query: 217 DLE----KLKGIFATGSIDNSIEKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKF 272
D+E L + G + ++E I+ + V+R++ + N++ L+
Sbjct: 273 DVEVYEVTLHSLCDAGKGEIALE-------------IYKEMVQREM-EPNLSLYKMLLNC 318
Query: 273 VVDKLGDEPKKALIFFRWAEESGFVKHDE-----SSYNAMASVLGREDCIDRFWKVLDEM 327
+ K GD + S +HD SY V GR I +++ ++
Sbjct: 319 LA-KSGDVSAVQSVADDMIRVSQIPEHDVHVCVLKSY----CVAGR---IREALELIRDL 370
Query: 328 RSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQL 387
++K +++ E ++ S N + +A+++ E K K V+ + I+++ L
Sbjct: 371 KNKEIQLDYEVSETLVKGLSRANRIADALEIVEIM---KRKDFVDGKVY---GIIINGYL 424
Query: 388 DMRLFSKVVRVF---RENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSN 444
SK + +F +E G++ T + +++ L +C ++ M E G S
Sbjct: 425 RRNELSKALDLFQSMKEFGHLPTTSTYTELMQHLFRSNEYQKCCELYDEMLERGVEIDSV 484
Query: 445 MKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKM 504
I EA E + ME G K + IK C D+ KM
Sbjct: 485 AVMAIVAGHVRQDHISEAWEVFETMEDKGIKPTWKSYSIFIKELCKVLRTDEIIKVLGKM 544
Score = 43.9 bits (102), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 52/117 (44%)
Query: 98 ESDFTVVSDIFYKFSDVNDISKQLELSGVVFTHEMVLKVLKNLESSPDEARRFFNWVLEK 157
E D V I D I LE + FT E+V + L+N + A FF WV ++
Sbjct: 630 EQDLQEVLRILSSLEDWPIIQDALEKCTIQFTPELVAETLRNCGMHGNAALHFFAWVGKQ 689
Query: 158 ESERLSSKTYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRNKMTEKFEKEGL 214
+++TYN+ +++ G + L M+++G+ + M ++ + GL
Sbjct: 690 NGFCQTTETYNMAMKVSGRGKDFKHMRSLFYEMRRRGFLIPPDTWAIMIMQYGRTGL 746
>gi|226505250|ref|NP_001147833.1| GTP binding protein [Zea mays]
gi|195614010|gb|ACG28835.1| GTP binding protein [Zea mays]
gi|413952711|gb|AFW85360.1| GTP binding protein [Zea mays]
Length = 547
Score = 69.3 bits (168), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 94/435 (21%), Positives = 174/435 (40%), Gaps = 58/435 (13%)
Query: 117 ISKQLELSGVVFTHEMVLKVLKNLESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVGV 176
I+ L+ GV + E+V +VLKNL ++ A FF W +E +++ ++ ++ +G
Sbjct: 114 IASTLDALGVAVSPELVAEVLKNLSNAGMLALAFFRWAERQEGFSYTAEGFHNLIEALGK 173
Query: 177 HGLVQEFWGLVDVMKKKG-------------YGVASHVRNKMTEKFEKE---GLESDLEK 220
+ W LV+ M+ +G Y A V+ + E FEK GL+++L
Sbjct: 174 IKQFRLVWSLVETMRCRGLLSKDTFKLIVRRYARARKVKEAV-ETFEKMSIFGLKTELSD 232
Query: 221 LKGIFATGSIDNSIEKVASRICK---------------VVRSDIWGDD------------ 253
+ T S ++K A I K V + WG +
Sbjct: 233 YNWLIDTLSKSKQVKK-AQAIYKEMKRKGKFVPDLKTYTVLMEGWGHEKDLLMVKTMYQE 291
Query: 254 -VERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLG 312
++ +R V + + F DE A+ F E SG + Y + + LG
Sbjct: 292 MIDAGIRPDVVAYGMLISAFCKSGKCDE---AIKVFYEMEASGCMPSPH-VYCMLINGLG 347
Query: 313 REDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVN 372
E+ +D K + + G+ ME+ TC V+G + + + A + + CK P+
Sbjct: 348 SEERLDEALKYFEHYKKSGFPMEVPTCNAVVGAYCRASKFQHAFKMVDEMRKCKVGPNSR 407
Query: 373 CCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNS---VLKALISVGRMGECNK 429
+L ++ S++ F + +F+ G + LN+ ++ S GR+ K
Sbjct: 408 TYDVILHYLIKSQK-----FEEAYNIFQRMGIDGCEPQLNTYTMMVGMFCSNGRVDMALK 462
Query: 430 ILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHC 489
+ K M E G + +M S + L + +EA + M G +++ +L +
Sbjct: 463 VWKQMGEKGVLPCMHMFSALINGLCFENRLEEACVYFQEMLDKGIRPPGQLFSNLKEALV 522
Query: 490 VAGDLDKAADCFQKM 504
G + A + K+
Sbjct: 523 QGGRISLAQEVALKL 537
>gi|302759535|ref|XP_002963190.1| hypothetical protein SELMODRAFT_79513 [Selaginella moellendorffii]
gi|300168458|gb|EFJ35061.1| hypothetical protein SELMODRAFT_79513 [Selaginella moellendorffii]
Length = 573
Score = 69.3 bits (168), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 92/397 (23%), Positives = 163/397 (41%), Gaps = 15/397 (3%)
Query: 253 DVERQLRDLNVTFSNDLVKF--VVD---KLGDEPKKALIFFRWAEESGFVKHDESSYNAM 307
+V +++RD + + DLV + V++ K G+ + I G + D +Y ++
Sbjct: 62 EVLKEMRD-GKSVAPDLVTYSTVINGFCKQGEMDRACEILREMVTRDG-IAPDVVTYTSV 119
Query: 308 ASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLY-EFAMACK 366
L R+ +DR +++ EM+ KG E + T ++ + V EA+ LY E +
Sbjct: 120 VDGLCRDGKMDRACEMVREMKLKGVEPDKFTFSALITGWCNARKVDEALKLYKEILTSSS 179
Query: 367 NKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGE 426
KP V T L+ S L+ + K++ V V +S+L L G + +
Sbjct: 180 WKPDVVTYTALIDGFCKSGNLEKAM--KMLGVMEGRKCVPNVVTYSSLLHGLCKAGDLDQ 237
Query: 427 CNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIK 486
+ + M G + + + + L +A K D A MD M A+ + +L+
Sbjct: 238 ALDLFRRMTSKGCVPNVVTYTTLIHGLCAAHKVDAARLLMDEMTATCCPPDTVSYNALLD 297
Query: 487 GHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDL 546
G+C G +++A F++M K LV +C+ +R +A + N +
Sbjct: 298 GYCRLGRIEEAKQLFKEMATKSCLPDR-ITYTCLVRGFCNASRLEEARFLLENMKTAAGI 356
Query: 547 KPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFV---DPFIKYVSKSGTSDDAIA 603
P TY ++ + F +A + M P I + K+G D A+
Sbjct: 357 DPDVVTYSIVVAGYSRAKRFVEAAEFIQEMIARNVAPNAVTYSSLIDGLCKAGRVDHAME 416
Query: 604 FLKGMTSKRF-PSMSVVLCLFAAFFQARRHSEAQDLL 639
LK M +KR PS+ + A + EA LL
Sbjct: 417 VLKNMVNKRVEPSVGTFNSVIGALCRLGDMDEAWKLL 453
>gi|302142431|emb|CBI19634.3| unnamed protein product [Vitis vinifera]
Length = 839
Score = 69.3 bits (168), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 89/344 (25%), Positives = 145/344 (42%), Gaps = 42/344 (12%)
Query: 239 SRICKVV---RSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESG 295
SRIC++V R + + LN FS+D+V V+ L P +L FF++ +
Sbjct: 11 SRICRLVLLRRCN--------AISKLNFVFSDDIVDAVLRNLRLNPTASLGFFQFVSKQQ 62
Query: 296 FVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMV--K 353
+ + SY + +L R ++ DE R+ ++ ++ C +F +R V
Sbjct: 63 NFRPNVKSYCKLVHILSR-------GRMYDETRAYLNQL-VDLC-----KFKDRGNVIWD 109
Query: 354 EAVDLY-EFAMACKNKPSVNCCTFLLRKIVVSKQLD---MRLFSKVVRVFRENGNVLTDA 409
E V +Y EFA + P+V ++ K+ V K L + +F + + G + +
Sbjct: 110 ELVGVYREFAFS----PTV---FDMILKVYVEKGLTKNALYVFDNMGKC----GRIPSLR 158
Query: 410 MLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHM 469
NS+L L+ G + + + M G + M S + GK DEA F+ M
Sbjct: 159 SCNSLLNNLVKNGETHTAHYVYQQMIRVGIVPDVFMVSIMVNAFCKDGKVDEAAGFVKKM 218
Query: 470 EASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNR 529
E G + + SLI G+ GD++ A + M EK G S LL+ YC + +
Sbjct: 219 ENLGVEPNIVTYHSLINGYVSLGDVEAAKGVLKFMSEK-GVSRNVVTYTLLIKGYCKQCK 277
Query: 530 AIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLL 573
+A K + E L P Y LI DA+ LL
Sbjct: 278 MDEAEKVLRGMQEEAALVPDERAYGVLIDGYCRTGKIDDAVRLL 321
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 66/258 (25%), Positives = 105/258 (40%), Gaps = 23/258 (8%)
Query: 388 DMRLFSKVVRVFRENG---NVLTDAMLNSVLKALISVGRMGECNKILKAM-EEGGFIASS 443
D+ V++ E G NV+T +L +K +M E K+L+ M EE +
Sbjct: 242 DVEAAKGVLKFMSEKGVSRNVVTYTLL---IKGYCKQCKMDEAEKVLRGMQEEAALVPDE 298
Query: 444 NMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQK 503
+ GK D+A +D M G + SLI G+C G++ +A +
Sbjct: 299 RAYGVLIDGYCRTGKIDDAVRLLDEMLRLGLKTNLFICNSLINGYCKRGEIHEAEGVITR 358
Query: 504 MVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQ 563
MV+ + Y+ + L++ YC + +A ++E ++P TY L+K L
Sbjct: 359 MVDWNLKPDS-YSYNTLLDGYCREGHTSEAFNLCDKMLQE-GIEPTVLTYNTLLKGLCRV 416
Query: 564 RGFKDALSLLCLMKDHGFPP-------FVDPFIKYVSKSGTSD---DAIAFLKGMTSKR- 612
F DAL + LM G P +D K + G S D +A +G T R
Sbjct: 417 GAFDDALQIWHLMMKRGVAPDEVGYSTLLDGLFKMENFEGASTLWKDILA--RGFTKSRI 474
Query: 613 -FPSMSVVLCLFAAFFQA 629
F +M LC +A
Sbjct: 475 TFNTMISGLCKMGKMVEA 492
Score = 58.9 bits (141), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 84/368 (22%), Positives = 139/368 (37%), Gaps = 13/368 (3%)
Query: 279 DEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMET 338
DE +K L R +E + DE +Y + R ID ++LDEM G + +
Sbjct: 279 DEAEKVL---RGMQEEAALVPDERAYGVLIDGYCRTGKIDDAVRLLDEMLRLGLKTNLFI 335
Query: 339 CVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRV 398
C ++ + +R + EA + + KP LL F+ ++
Sbjct: 336 CNSLINGYCKRGEIHEAEGVITRMVDWNLKPDSYSYNTLLDGYCREGHTS-EAFNLCDKM 394
Query: 399 FRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGK 458
+E G T N++LK L VG + +I M + G S + L
Sbjct: 395 LQE-GIEPTVLTYNTLLKGLCRVGAFDDALQIWHLMMKRGVAPDEVGYSTLLDGLFKMEN 453
Query: 459 KDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAID 518
+ A+ + A G + ++I G C G + +A + F KM + G S G
Sbjct: 454 FEGASTLWKDILARGFTKSRITFNTMISGLCKMGKMVEAEEIFDKM-KDLGCSPDGITYR 512
Query: 519 LLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKD 578
L++ YC + A K V + + P Y LI L R + LL M
Sbjct: 513 TLIDGYCKASNVGQAFK-VKGAMEREPISPSIEMYNSLISGLFKSRRLVEVTDLLTEMGI 571
Query: 579 HGFPPFVDPFIKYVS---KSGTSDDAIAFLKGMTSKRFPSMSVVLC--LFAAFFQARRHS 633
G P + + + K G D A + MT S ++++C + + ++ R
Sbjct: 572 RGLTPNIVTYGALIDGWCKEGMLDKAFSSYFEMTENGL-SANIIICSTMVSGLYRLGRID 630
Query: 634 EAQDLLSK 641
EA L+ K
Sbjct: 631 EANLLMQK 638
Score = 40.4 bits (93), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 50/232 (21%), Positives = 90/232 (38%), Gaps = 24/232 (10%)
Query: 303 SYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKV------LGRFSERNMVKEAV 356
+Y A+ +E +D+ + EM G + C + LGR E N++ + +
Sbjct: 580 TYGALIDGWCKEGMLDKAFSSYFEMTENGLSANIIICSTMVSGLYRLGRIDEANLLMQKM 639
Query: 357 DLYEFAMACKNKPSVNCCTFL---LRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNS 413
+ F P C FL +R + K D + + F N++ N
Sbjct: 640 VDHGFF------PDHEC--FLKSDIRYAAIQKIADS--LDESCKTFLLPNNIV----YNI 685
Query: 414 VLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASG 473
+ L G++ + + + GF+ + + S+AG DEA D M G
Sbjct: 686 AIAGLCKTGKVDDARRFFSMLSLKGFVPDNFTYCTLIHGYSAAGNVDEAFRLRDEMLRRG 745
Query: 474 SDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYC 525
+ +LI G C + ++D+A F K+ +K G + L++ YC
Sbjct: 746 LVPNIVTYNALINGLCKSENVDRAQRLFHKLHQK-GLFPNVVTYNTLIDGYC 796
>gi|224077524|ref|XP_002305285.1| predicted protein [Populus trichocarpa]
gi|222848249|gb|EEE85796.1| predicted protein [Populus trichocarpa]
Length = 523
Score = 69.3 bits (168), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 79/338 (23%), Positives = 131/338 (38%), Gaps = 53/338 (15%)
Query: 253 DVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLG 312
D+E L + S +LV+ V+ + + A FF WA+ +H E SY+ + ++LG
Sbjct: 64 DLETSLNAFSSEISTNLVEQVLKRCKNLGFSAHRFFLWAKRIPGFEHSEESYHILVNILG 123
Query: 313 REDCIDRFWKVLDEMR-SKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSV 371
W L EMR S +E+ E V +S N+ +A+ ++ +PSV
Sbjct: 124 TSRQFAILWDFLIEMRESHDFEINQEIIWLVFRSYSRANLPSDAIRAFDRMAEFGLRPSV 183
Query: 372 NCCTFLLRKIVVSKQLD--MRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNK 429
+ LL + K + + F +V F
Sbjct: 184 DDLDKLLYVLCKCKHVKCAQQFFDRVKHKFE----------------------------- 214
Query: 430 ILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHC 489
A + S + G+ EA + D M G + + SL++ C
Sbjct: 215 -----------AKAKTYSILVRGWGDIGEAVEARKVFDEMRGRGCALDVLAYNSLLEALC 263
Query: 490 VAGDLDKAADCFQKM----VEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYD 545
G++D+A F+++ VE + S+A + + YC N I + V + ++ YD
Sbjct: 264 KGGNVDEAYKMFREIGSHGVEPDACSYA-----IFIRAYCEANN-IHSVFSVLDRMKRYD 317
Query: 546 LKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPP 583
L P TY +IK L +DA LL M + G P
Sbjct: 318 LVPNVFTYNCIIKKLCKNGKVEDAYQLLHEMMERGVSP 355
Score = 47.4 bits (111), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 101/527 (19%), Positives = 206/527 (39%), Gaps = 60/527 (11%)
Query: 66 YSRLINLIDPKNPNFRNPMICSYSSEPAMEQKESDFTVVSDIFYKFSDVNDISKQLELSG 125
+S +L K+ + R+P+ S+ + Q +V++I SD + LE S
Sbjct: 14 HSLFQSLCTSKSHSHRHPL----STLTPLNQIPPLPGLVNEISRILSDQRNPHHDLETSL 69
Query: 126 VVFTHE----MVLKVLKNLESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQ 181
F+ E +V +VLK ++ A RFF W S ++Y++++ I+G
Sbjct: 70 NAFSSEISTNLVEQVLKRCKNLGFSAHRFFLWAKRIPGFEHSEESYHILVNILGTSRQFA 129
Query: 182 EFWG-LVDVMKKKGYGVASHVRNKMTEKFEKEGLESD----LEKLKGIFATGSIDNSIEK 236
W L+++ + + + + + + + L SD +++ S+D+ ++K
Sbjct: 130 ILWDFLIEMRESHDFEINQEIIWLVFRSYSRANLPSDAIRAFDRMAEFGLRPSVDD-LDK 188
Query: 237 VASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGF 296
+ +CK +V + V K + K I R + G
Sbjct: 189 LLYVLCKCK----------------HVKCAQQFFDRVKHKFEAKAKTYSILVRGWGDIG- 231
Query: 297 VKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAV 356
+V R KV DEMR +G +++ +L + V EA
Sbjct: 232 -----------EAVEAR--------KVFDEMRGRGCALDVLAYNSLLEALCKGGNVDEAY 272
Query: 357 DLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFREN--GNVLTDAMLNSV 414
++ + +P +R + + +FS + R+ R + NV T N +
Sbjct: 273 KMFREIGSHGVEPDACSYAIFIRAYCEANNIH-SVFSVLDRMKRYDLVPNVFT---YNCI 328
Query: 415 LKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGS 474
+K L G++ + ++L M E G + + I + + A + + M
Sbjct: 329 IKKLCKNGKVEDAYQLLHEMMERGVSPDAWSYNTILAYHCEHSEVNRATKLISIMVKDNC 388
Query: 475 DVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAI-DA 533
+ L+K G D+A + ++ M E+ G + ++++ C K + +A
Sbjct: 389 LPDRHSYNMLLKLLVRVGRFDRATEIWESMGER-GFYPSVSTYSVMIHGLCKKKGKLEEA 447
Query: 534 CKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHG 580
C++ + E + P+ +T E+++N L+ G D + +L + G
Sbjct: 448 CRYFETMIDE-GIPPYASTI-EMLRNRLIGFGLLDHIEILACKMERG 492
>gi|15226656|ref|NP_179197.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75267579|sp|Q9XIM8.1|PP155_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g15980
gi|5306237|gb|AAD41970.1| hypothetical protein [Arabidopsis thaliana]
gi|330251359|gb|AEC06453.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 498
Score = 69.3 bits (168), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 70/301 (23%), Positives = 123/301 (40%), Gaps = 20/301 (6%)
Query: 317 IDRFWKVLDEMRSKGYEMEMETCVKVLGRFSER-------NMVKEAVDLYEFA------M 363
ID V+ ++RS+G ++ TC ++ S R M +E L + + M
Sbjct: 178 IDGAVMVMRKLRSRGINAQISTCNALITEVSRRRGASNGYKMYREVFGLDDVSVDEAKKM 237
Query: 364 ACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAM-LNSVLKALISVG 422
K KP N TF + ++ + + ++ R E + N +++A + G
Sbjct: 238 IGKIKP--NATTFNSMMVSFYREGETEMVERIWREMEEEVGCSPNVYSYNVLMEAYCARG 295
Query: 423 RMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWV 482
M E K+ + M+ G + + + L S + +A E M G + +
Sbjct: 296 LMSEAEKVWEEMKVRGVVYDIVAYNTMIGGLCSNFEVVKAKELFRDMGLKGIECTCLTYE 355
Query: 483 SLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSK---NRAIDACKFVHN 539
L+ G+C AGD+D +++M +++G G I+ LV C R ++A V +
Sbjct: 356 HLVNGYCKAGDVDSGLVVYREM-KRKGFEADGLTIEALVEGLCDDRDGQRVVEAADIVKD 414
Query: 540 CVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPFIKYVSKSGTSD 599
VRE P YE L+K L AL++ M GF P + + ++ G
Sbjct: 415 AVREAMFYPSRNCYELLVKRLCEDGKMDRALNIQAEMVGKGFKPSQETYRAFIDGYGIVG 474
Query: 600 D 600
D
Sbjct: 475 D 475
>gi|356542070|ref|XP_003539494.1| PREDICTED: pentatricopeptide repeat-containing protein At1g02060,
chloroplastic-like [Glycine max]
Length = 729
Score = 68.9 bits (167), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 92/392 (23%), Positives = 147/392 (37%), Gaps = 52/392 (13%)
Query: 236 KVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESG 295
K A I ++ S + + + L L +T S V + +L +P KAL FF+W ++ G
Sbjct: 50 KTAKTIANLINSKPFSNGL---LSSLLITISKTTVLRTL-RLIKDPSKALRFFKWTQQKG 105
Query: 296 FVKHDESSYNAMASVLGREDCID--RFWKVLDEMRSKG-YEMEMETCVKVLGRFSERNMV 352
F H SY M +LGRE ++ R + E SKG ++E ++ ++E +
Sbjct: 106 F-SHTPESYFIMLEILGRERNLNVARNFLFSIEKHSKGTVKLEDRFFNSLIRSYAEAGLF 164
Query: 353 KEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLN 412
KE++ L++ + PSV N
Sbjct: 165 KESMKLFQTMKSIAVSPSV-------------------------------------VTFN 187
Query: 413 SVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFR-LSSAGKKDEANEFMDHMEA 471
S++ L+ GR ++ M ++ + R DE F ME+
Sbjct: 188 SLMSILLKRGRTNMAKEVYDEMLGTYGVSPDTCTYNVLIRGFCKNSMVDEGFRFFREMES 247
Query: 472 SGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEK-EGTSHAGYAIDLLVNTYCSKNRA 530
D + +L+ G C AG + A + M +K EG + L+ YC K
Sbjct: 248 FNCDADVVTYNTLVDGLCRAGKVRIARNLVNGMGKKCEGLNPNVVTYTTLIRGYCMKQEV 307
Query: 531 IDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMK-DHGFPPFVDPF- 588
+A + + LKP TY L+K L +L MK D GF P F
Sbjct: 308 EEALVVLEE-MTSRGLKPNMITYNTLVKGLCEAHKLDKMKDVLERMKSDGGFSPDTFTFN 366
Query: 589 --IKYVSKSGTSDDAIAFLKGMTSKRFPSMSV 618
I +G D+A+ + M R P+ S
Sbjct: 367 TIIHLHCCAGNLDEALKVFESMKKFRIPADSA 398
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 105/523 (20%), Positives = 196/523 (37%), Gaps = 70/523 (13%)
Query: 126 VVFTHEMVLKVLKNLESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVGVH---GLVQE 182
+ + VL+ L+ L P +A RFF W +K + ++Y +ML I+G + +
Sbjct: 74 ITISKTTVLRTLR-LIKDPSKALRFFKWTQQKGFSH-TPESYFIMLEILGRERNLNVARN 131
Query: 183 FWGLVDVMKKKGYGVASHVRNKMTEKFEKEGLESDLEKLKGIFATGSIDNSIEKVASRIC 242
F ++ K + N + + + GL + KL + ++ S+
Sbjct: 132 FLFSIEKHSKGTVKLEDRFFNSLIRSYAEAGLFKESMKLFQTMKSIAVSPSV-------- 183
Query: 243 KVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDES 302
VTF N L+ ++ K G ++ G V D
Sbjct: 184 --------------------VTF-NSLMSILL-KRGRTNMAKEVYDEMLGTYG-VSPDTC 220
Query: 303 SYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYE-F 361
+YN + + +D ++ EM S + ++ T ++ V+ A +L
Sbjct: 221 TYNVLIRGFCKNSMVDEGFRFFREMESFNCDADVVTYNTLVDGLCRAGKVRIARNLVNGM 280
Query: 362 AMACKN-KPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALIS 420
C+ P+V T L+R + ++++ L V+ G N+++K L
Sbjct: 281 GKKCEGLNPNVVTYTTLIRGYCMKQEVEEALV--VLEEMTSRGLKPNMITYNTLVKGLCE 338
Query: 421 VGRMGECNKILKAME-EGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDK 479
++ + +L+ M+ +GGF + + I AG DEA + + M+
Sbjct: 339 AHKLDKMKDVLERMKSDGGFSPDTFTFNTIIHLHCCAGNLDEALKVFESMKKFRIPADSA 398
Query: 480 MWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHN 539
+ +LI+ C GD D A F ++ EKE +L++ + SK A +N
Sbjct: 399 SYSTLIRSLCQKGDYDMAEQLFDELFEKE----------ILLSKFGSKPLAAS-----YN 443
Query: 540 CVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPFIKYVSKSGTSD 599
+ E + T E + L++RG +D S ++ H K G +
Sbjct: 444 PIFESLCEHGKTKKAERVIRQLMKRGTQDPQSYTTVIMGH-------------CKEGAYE 490
Query: 600 DAIAFLKGMTSKRF-PSMSVVLCLFAAFFQARRHSEAQDLLSK 641
L M + F P + + L F Q + A++ L K
Sbjct: 491 SGYELLMWMLRRDFLPDIEIYDYLIDGFLQKDKPLLAKETLEK 533
>gi|302143887|emb|CBI22748.3| unnamed protein product [Vitis vinifera]
Length = 518
Score = 68.9 bits (167), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 80/377 (21%), Positives = 157/377 (41%), Gaps = 31/377 (8%)
Query: 222 KGIFATGSIDNSIEKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFV-------V 274
KG F +D ASR+ ++++ D G + L +L + S LV+ V V
Sbjct: 111 KGYFDNMRLD------ASRVLQILQQDCPGFSTKAALDELQIRVSGGLVREVLLEILKTV 164
Query: 275 DKLGDE--PKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGY 332
+ E K FF W+ + +H ++Y+ + + D W+++DEM +G+
Sbjct: 165 NYTNKERCAKLGYKFFMWSGQQENYRHTVNAYHLIMKIFAESDEFKAMWRLVDEMIEQGF 224
Query: 333 EMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLF 392
+ T ++ E + + AV+ + + +P + +L ++ KQ +
Sbjct: 225 PVTARTFQILICTCGEAGLARRAVERFVKSKNFNYRPFKHSYNAILHCLLCLKQ-----Y 279
Query: 393 SKVVRVFRE------NGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMK 446
V V+++ + ++LT N V+ +G++ + +++L+ + GF +
Sbjct: 280 KLVEWVYQQMLLEDYSPDILT---YNIVMCTKYRLGKLDQFHRLLEELGTNGFSPDFHTF 336
Query: 447 SKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVE 506
+ + L K A + ++HM+ G D + +LI G AG+LD F +M+
Sbjct: 337 NILLHLLGKGNKPLAALDLLNHMKEVGFDPSVLHFTTLIDGLSRAGNLDACKYFFDEMI- 395
Query: 507 KEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGF 566
K G +++ Y A + L P TY +I+ L + F
Sbjct: 396 KLGCMPDVVCYTVMITGYIVAGELEMAQGLFEEMTVKGQL-PNVFTYNSMIRGLCMAEKF 454
Query: 567 KDALSLLCLMKDHGFPP 583
++A S+L M+ G P
Sbjct: 455 EEARSMLKEMESRGCNP 471
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 85/380 (22%), Positives = 159/380 (41%), Gaps = 41/380 (10%)
Query: 120 QLELSGVVFTHEMVLKVLKNLESSPDE-----ARRFFNWVLEKESERLSSKTYNLMLRIV 174
Q+ +SG + E++L++LK + + E +FF W ++E+ R + Y+L+++I
Sbjct: 145 QIRVSGGL-VREVLLEILKTVNYTNKERCAKLGYKFFMWSGQQENYRHTVNAYHLIMKIF 203
Query: 175 GVHGLVQEFWGLVDVMKKKGYGVASHVRNKMTEKFEKEGL-ESDLEKL--KGIFATGSID 231
+ W LVD M ++G+ V + + + GL +E+ F
Sbjct: 204 AESDEFKAMWRLVDEMIEQGFPVTARTFQILICTCGEAGLARRAVERFVKSKNFNYRPFK 263
Query: 232 NSIEKVAS--------RICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKK 283
+S + ++ + V + +D + N+ K+ + KL
Sbjct: 264 HSYNAILHCLLCLKQYKLVEWVYQQMLLEDYSPDILTYNIVMC---TKYRLGKLDQ---- 316
Query: 284 ALIFFRWAEESGF--VKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYE---MEMET 338
F R EE G D ++N + +LG+ + +L+ M+ G++ + T
Sbjct: 317 ---FHRLLEELGTNGFSPDFHTFNILLHLLGKGNKPLAALDLLNHMKEVGFDPSVLHFTT 373
Query: 339 CVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMR--LFSKVV 396
+ L R + K D + C P V C T ++ +V+ +L+M LF ++
Sbjct: 374 LIDGLSRAGNLDACKYFFDEM-IKLGCM--PDVVCYTVMITGYIVAGELEMAQGLFEEMT 430
Query: 397 RVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSA 456
V + NV T NS+++ L + E +LK ME G + + + + L +A
Sbjct: 431 -VKGQLPNVFT---YNSMIRGLCMAEKFEEARSMLKEMESRGCNPNFLVYNTLVGNLRNA 486
Query: 457 GKKDEANEFMDHMEASGSDV 476
GK EA+E + HM G V
Sbjct: 487 GKLKEAHEVIRHMVDKGQYV 506
Score = 40.8 bits (94), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 46/216 (21%), Positives = 91/216 (42%), Gaps = 8/216 (3%)
Query: 300 DESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLY 359
D +YN + R +D+F ++L+E+ + G+ + T +L + N A+DL
Sbjct: 297 DILTYNIVMCTKYRLGKLDQFHRLLEELGTNGFSPDFHTFNILLHLLGKGNKPLAALDLL 356
Query: 360 EFAMACKNKPSVNCCTFLLRKIVVSKQLDM--RLFSKVVRVFRENGNVLTDAMLNSVL-K 416
PSV T L+ + + LD F +++++ + D + +V+
Sbjct: 357 NHMKEVGFDPSVLHFTTLIDGLSRAGNLDACKYFFDEMIKL-----GCMPDVVCYTVMIT 411
Query: 417 ALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDV 476
I G + + + M G + + + + L A K +EA + ME+ G +
Sbjct: 412 GYIVAGELEMAQGLFEEMTVKGQLPNVFTYNSMIRGLCMAEKFEEARSMLKEMESRGCNP 471
Query: 477 GDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSH 512
++ +L+ AG L +A + + MV+K H
Sbjct: 472 NFLVYNTLVGNLRNAGKLKEAHEVIRHMVDKGQYVH 507
>gi|255660940|gb|ACU25639.1| pentatricopeptide repeat-containing protein [Stachytarpheta
cayennensis]
Length = 484
Score = 68.9 bits (167), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 79/364 (21%), Positives = 151/364 (41%), Gaps = 48/364 (13%)
Query: 258 LRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCI 317
+R+L + ++LV V+ + AL FFRW E S +H+ ++ + +LGR +
Sbjct: 3 IRNLVPSIDHELVYNVLHS-AKNSEHALQFFRWVERSNLFEHNRETHLKIIEILGRASKL 61
Query: 318 DRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFL 377
+ +L +M KG E + + V ++ + + +V+E+V
Sbjct: 62 NHARCILLDMPKKGLEWDEDLWVLMIDSYGKAGIVQESV--------------------- 100
Query: 378 LRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEG 437
++F K+ E G T +++ K ++ GR + M
Sbjct: 101 ------------KMFQKM----EELGVERTIKSYDALFKVILRRGRYMMAKRYFNKMLSE 144
Query: 438 GFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKA 497
G + + + + + +GK + AN F + M++ + +++ G+C +++A
Sbjct: 145 GIEPTRHTFNVMMWGFFLSGKVETANRFFEDMKSREIMPDVVTYNTMVNGYCRVKKMEEA 204
Query: 498 ADCFQKMVEKEGTSHAGYAI--DLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEE 555
F VE +G + + L+ Y S +R DA +FV ++ + +KP TY
Sbjct: 205 EKYF---VEMKGRNIEPTVVTYTTLIKGYVSVDRVDDALRFVEE-MKGFGMKPNAITYST 260
Query: 556 LIKNLLVQRGFKDALSLLCLMKDHGFPPFVDP-FIKYVS---KSGTSDDAIAFLKGMTSK 611
L+ L +A S+L M D P + F++ +S K+G D A LK M
Sbjct: 261 LLPGLCNAEKMSEARSILKEMVDKYIAPTDNSIFMRLISGQCKAGDLDAAANVLKAMIRL 320
Query: 612 RFPS 615
P+
Sbjct: 321 SVPT 324
Score = 49.3 bits (116), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 73/310 (23%), Positives = 135/310 (43%), Gaps = 43/310 (13%)
Query: 312 GREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKN-KPS 370
G+ + +RF+ ++M+S+ ++ T ++ + ++EA + Y M +N +P+
Sbjct: 164 GKVETANRFF---EDMKSREIMPDVVTYNTMVNGYCRVKKMEEA-EKYFVEMKGRNIEPT 219
Query: 371 VNCCTFLLRKIVVSKQLDMRL-FSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNK 429
V T L++ V ++D L F + ++ F N +T +++L L + +M E
Sbjct: 220 VVTYTTLIKGYVSVDRVDDALRFVEEMKGFGMKPNAIT---YSTLLPGLCNAEKMSEARS 276
Query: 430 ILKAMEEGGFIASSNMKSKIAFRLSS----AGKKDEANEFMDHMEASGSDVGDKMWVSLI 485
ILK M + +IA ++ + I RL S AG D A + M + LI
Sbjct: 277 ILKEMVDK-YIAPTD--NSIFMRLISGQCKAGDLDAAANVLKAMIRLSVPTEAGHYGVLI 333
Query: 486 KGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYD 545
+ +C AG+ DKA K++EK D+++ + + A +N + EY
Sbjct: 334 ENYCKAGEYDKAIKLLDKVIEK----------DIILRPQSTLHMESSA----YNPLIEYL 379
Query: 546 LKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPFIKYVSKSGTSDDAIAFL 605
T E + L++ G +D +L L++ H S+ G+ D A L
Sbjct: 380 CNNGQTAKAEALVRQLMKLGVQDPTALNTLIRGH-------------SQEGSPDSAFELL 426
Query: 606 KGMTSKRFPS 615
K M ++ S
Sbjct: 427 KIMLRRKVDS 436
>gi|357130063|ref|XP_003566676.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
distachyon]
Length = 822
Score = 68.9 bits (167), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 80/341 (23%), Positives = 143/341 (41%), Gaps = 25/341 (7%)
Query: 283 KALIFFRWAEESGFVKHDESSYNAMA---SVLGREDCIDRFWK----VLDEMRSKGYEME 335
KA + R +GF + D+ +YN M S+LG+ WK + EM +G +
Sbjct: 280 KAELVLRQMISNGF-EPDKVTYNCMIHGYSILGQ-------WKETAGMFREMTRRGLMPD 331
Query: 336 METCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQL-DM-RLFS 393
+ TC + + KEA + ++ A +KP + + LL + DM LF+
Sbjct: 332 IFTCNSYMSSLCKHGKSKEAAEFFDSMAAKGHKPDLVTYSVLLHGYAAEGYVVDMLNLFN 391
Query: 394 KVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRL 453
+ NG V ++ N ++ A G M E I M+E G + + +
Sbjct: 392 SM----EGNGIVADHSVYNILIDAYGKRGMMDEAMLIFTQMQERGVMPDAWTYGTVIAAF 447
Query: 454 SSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHA 513
S G+ +A + + M A G ++ SLI+G C+ G+L KA + +M+ +
Sbjct: 448 SRMGRLADAMDKFNQMIAMGLKPDTIVYNSLIQGFCMHGNLVKAKELISEMMSRGIPRPN 507
Query: 514 GYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLL 573
+ ++N+ C + R ++A + + + V +P T+ LI + + A +L
Sbjct: 508 TVFFNSIINSLCKEGRVVEA-QDIFDLVIHIGERPDVITFNSLIDGYGLVGKMEKAFGVL 566
Query: 574 CLMKDHGFPPFV---DPFIKYVSKSGTSDDAIAFLKGMTSK 611
M G P V + ++G DD + + M SK
Sbjct: 567 DAMISVGIEPDVVTYSALLDGYCRNGRIDDGLILFREMLSK 607
>gi|255660874|gb|ACU25606.1| pentatricopeptide repeat-containing protein [Verbena canescens]
Length = 484
Score = 68.9 bits (167), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 86/391 (21%), Positives = 161/391 (41%), Gaps = 49/391 (12%)
Query: 258 LRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCI 317
+R+L +F ++LV V+ + AL FFRW E S +H+ ++ + +LGR +
Sbjct: 3 IRNLVPSFDHELVYNVLHS-SKTSEHALQFFRWVERSNLFEHNRETHLKIIEILGRASKL 61
Query: 318 DRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFL 377
+ +L +M KG E + + V ++ + + +V+E+V
Sbjct: 62 NHARCILLDMPKKGLEWDEDMWVMMIDSYGKEGIVQESV--------------------- 100
Query: 378 LRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEG 437
++F K+ E G T N++ K ++ GR + M
Sbjct: 101 ------------KMFQKM----EELGVERTIKSYNALFKVILRRGRYMMAKRYFNKMLSE 144
Query: 438 GFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKA 497
G + + + + + +GK + AN F + M++ + ++I G+ +++A
Sbjct: 145 GIEPTRHTFNVMIWGFFLSGKVETANRFFEDMKSREISPDVVTYNTMINGYYRVKKMEEA 204
Query: 498 ADCFQKMVEKEGTSHAGYAI--DLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEE 555
F VE +G + + L+ Y S ++ DA + V ++ + +KP TY
Sbjct: 205 EKYF---VEMKGRNIEPTVVTYTTLIKGYVSVDQVDDALRLVEE-MKGFGIKPNAITYST 260
Query: 556 LIKNLLVQRGFKDALSLLCLMKDHGFPPFVDP-FIKYVS---KSGTSDDAIAFLKGMTSK 611
L+ L +A +L M D P + F++ +S KSG D A LK M
Sbjct: 261 LLPGLCNAEKMSEARVILKEMMDKYLAPTDNSIFLRLISSHCKSGNLDAAADVLKAMIRL 320
Query: 612 RFPSMSVVL-CLFAAFFQARRHSEAQDLLSK 641
P+ + L F +A ++ +A LL K
Sbjct: 321 SVPTEAGHYGILIENFCKAGQYDKAVKLLDK 351
Score = 52.8 bits (125), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 110/505 (21%), Positives = 203/505 (40%), Gaps = 95/505 (18%)
Query: 128 FTHEMVLKVLKNLESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLV 187
F HE+V VL + ++S + A +FF WV + +T+ ++ I+G + ++
Sbjct: 10 FDHELVYNVLHSSKTS-EHALQFFRWVERSNLFEHNRETHLKIIEILGRASKLNHARCIL 68
Query: 188 DVMKKKGYGVASHVRNKMTEKFEKEGLESDLEKLKGIFATGSIDNSIEKVASRICKVVRS 247
M KKG + M + + KEG+ + K+ +E++
Sbjct: 69 LDMPKKGLEWDEDMWVMMIDSYGKEGIVQESVKMF---------QKMEELG--------- 110
Query: 248 DIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAM 307
VER ++ N F V+ + G F + E ++ ++N M
Sbjct: 111 ------VERTIKSYNALFK------VILRRGRYMMAKRYFNKMLSEG--IEPTRHTFNVM 156
Query: 308 A---SVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMA 364
+ G+ + +RF+ ++M+S+ ++ T ++ + ++EA + Y M
Sbjct: 157 IWGFFLSGKVETANRFF---EDMKSREISPDVVTYNTMINGYYRVKKMEEA-EKYFVEMK 212
Query: 365 CKN-KPSVNCCTFLLRKIVVSKQLD--MRLFSKVVRVFRENGNVLTDAMLNSVLKALISV 421
+N +P+V T L++ V Q+D +RL ++ + F N +T +++L L +
Sbjct: 213 GRNIEPTVVTYTTLIKGYVSVDQVDDALRLVEEM-KGFGIKPNAIT---YSTLLPGLCNA 268
Query: 422 GRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSA----GKKDEANEFMDHMEASGSDVG 477
+M E ILK M + + N I RL S+ G D A + + M
Sbjct: 269 EKMSEARVILKEMMDKYLAPTDN---SIFLRLISSHCKSGNLDAAADVLKAMIRLSVPTE 325
Query: 478 DKMWVSLIKGHCVAGDLDKAADCFQKMVEK------EGTSH-AGYAIDLLVNTYCSKNRA 530
+ LI+ C AG DKA K++EK + T H A +L++ C+ +A
Sbjct: 326 AGHYGILIENFCKAGQYDKAVKLLDKLIEKDIILRPQSTLHLEPSAYNLMIEYLCNNGQA 385
Query: 531 IDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPFIK 590
A E L++ L+ + G +D +L L++ H
Sbjct: 386 SKA--------------------ETLVRQLM-KLGVQDPTALNTLIRGH----------- 413
Query: 591 YVSKSGTSDDAIAFLKGMTSKRFPS 615
S+ G+ D A LK M ++ S
Sbjct: 414 --SQEGSPDSAFELLKIMLRRKVDS 436
>gi|225470179|ref|XP_002268211.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g55630-like [Vitis vinifera]
Length = 514
Score = 68.9 bits (167), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 80/377 (21%), Positives = 157/377 (41%), Gaps = 31/377 (8%)
Query: 222 KGIFATGSIDNSIEKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFV-------V 274
KG F +D ASR+ ++++ D G + L +L + S LV+ V V
Sbjct: 107 KGYFDNMRLD------ASRVLQILQQDCPGFSTKAALDELQIRVSGGLVREVLLEILKTV 160
Query: 275 DKLGDE--PKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGY 332
+ E K FF W+ + +H ++Y+ + + D W+++DEM +G+
Sbjct: 161 NYTNKERCAKLGYKFFMWSGQQENYRHTVNAYHLIMKIFAESDEFKAMWRLVDEMIEQGF 220
Query: 333 EMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLF 392
+ T ++ E + + AV+ + + +P + +L ++ KQ +
Sbjct: 221 PVTARTFQILICTCGEAGLARRAVERFVKSKNFNYRPFKHSYNAILHCLLCLKQ-----Y 275
Query: 393 SKVVRVFRE------NGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMK 446
V V+++ + ++LT N V+ +G++ + +++L+ + GF +
Sbjct: 276 KLVEWVYQQMLLEDYSPDILT---YNIVMCTKYRLGKLDQFHRLLEELGTNGFSPDFHTF 332
Query: 447 SKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVE 506
+ + L K A + ++HM+ G D + +LI G AG+LD F +M+
Sbjct: 333 NILLHLLGKGNKPLAALDLLNHMKEVGFDPSVLHFTTLIDGLSRAGNLDACKYFFDEMI- 391
Query: 507 KEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGF 566
K G +++ Y A + L P TY +I+ L + F
Sbjct: 392 KLGCMPDVVCYTVMITGYIVAGELEMAQGLFEEMTVKGQL-PNVFTYNSMIRGLCMAEKF 450
Query: 567 KDALSLLCLMKDHGFPP 583
++A S+L M+ G P
Sbjct: 451 EEARSMLKEMESRGCNP 467
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 85/380 (22%), Positives = 159/380 (41%), Gaps = 41/380 (10%)
Query: 120 QLELSGVVFTHEMVLKVLKNLESSPDE-----ARRFFNWVLEKESERLSSKTYNLMLRIV 174
Q+ +SG + E++L++LK + + E +FF W ++E+ R + Y+L+++I
Sbjct: 141 QIRVSGGL-VREVLLEILKTVNYTNKERCAKLGYKFFMWSGQQENYRHTVNAYHLIMKIF 199
Query: 175 GVHGLVQEFWGLVDVMKKKGYGVASHVRNKMTEKFEKEGL-ESDLEKL--KGIFATGSID 231
+ W LVD M ++G+ V + + + GL +E+ F
Sbjct: 200 AESDEFKAMWRLVDEMIEQGFPVTARTFQILICTCGEAGLARRAVERFVKSKNFNYRPFK 259
Query: 232 NSIEKVAS--------RICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKK 283
+S + ++ + V + +D + N+ K+ + KL
Sbjct: 260 HSYNAILHCLLCLKQYKLVEWVYQQMLLEDYSPDILTYNIVMC---TKYRLGKLDQ---- 312
Query: 284 ALIFFRWAEESGF--VKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYE---MEMET 338
F R EE G D ++N + +LG+ + +L+ M+ G++ + T
Sbjct: 313 ---FHRLLEELGTNGFSPDFHTFNILLHLLGKGNKPLAALDLLNHMKEVGFDPSVLHFTT 369
Query: 339 CVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMR--LFSKVV 396
+ L R + K D + C P V C T ++ +V+ +L+M LF ++
Sbjct: 370 LIDGLSRAGNLDACKYFFDEM-IKLGCM--PDVVCYTVMITGYIVAGELEMAQGLFEEMT 426
Query: 397 RVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSA 456
V + NV T NS+++ L + E +LK ME G + + + + L +A
Sbjct: 427 -VKGQLPNVFT---YNSMIRGLCMAEKFEEARSMLKEMESRGCNPNFLVYNTLVGNLRNA 482
Query: 457 GKKDEANEFMDHMEASGSDV 476
GK EA+E + HM G V
Sbjct: 483 GKLKEAHEVIRHMVDKGQYV 502
Score = 40.8 bits (94), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 46/216 (21%), Positives = 91/216 (42%), Gaps = 8/216 (3%)
Query: 300 DESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLY 359
D +YN + R +D+F ++L+E+ + G+ + T +L + N A+DL
Sbjct: 293 DILTYNIVMCTKYRLGKLDQFHRLLEELGTNGFSPDFHTFNILLHLLGKGNKPLAALDLL 352
Query: 360 EFAMACKNKPSVNCCTFLLRKIVVSKQLDM--RLFSKVVRVFRENGNVLTDAMLNSVL-K 416
PSV T L+ + + LD F +++++ + D + +V+
Sbjct: 353 NHMKEVGFDPSVLHFTTLIDGLSRAGNLDACKYFFDEMIKL-----GCMPDVVCYTVMIT 407
Query: 417 ALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDV 476
I G + + + M G + + + + L A K +EA + ME+ G +
Sbjct: 408 GYIVAGELEMAQGLFEEMTVKGQLPNVFTYNSMIRGLCMAEKFEEARSMLKEMESRGCNP 467
Query: 477 GDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSH 512
++ +L+ AG L +A + + MV+K H
Sbjct: 468 NFLVYNTLVGNLRNAGKLKEAHEVIRHMVDKGQYVH 503
>gi|297834714|ref|XP_002885239.1| EMB1270 [Arabidopsis lyrata subsp. lyrata]
gi|297331079|gb|EFH61498.1| EMB1270 [Arabidopsis lyrata subsp. lyrata]
Length = 1429
Score = 68.9 bits (167), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 78/365 (21%), Positives = 148/365 (40%), Gaps = 10/365 (2%)
Query: 281 PKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCV 340
P+ A AE GF Y + G+ + V+ +R G +++T
Sbjct: 732 PETAYQVVNQAETKGFHFACSPMYTDIIEAYGKLKLWQKAESVVGNLRQSGRTPDLKTWN 791
Query: 341 KVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFR 400
++ ++E + A ++ M P+V LL + V +L+ L+ VV +
Sbjct: 792 SLMSAYAECGCYERARAIFNTMMRDGPSPTVESINKLLHALCVDGRLE-ELYV-VVEELQ 849
Query: 401 ENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKD 460
+ G ++ + + +L A G + E NKI +M+ G++ + + ++ L GK+
Sbjct: 850 DMGFKISKSSILLMLDAFARAGNIFEVNKIYSSMKAAGYLPTIRL-YRMMIELLCKGKRV 908
Query: 461 EANEFM-DHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDL 519
E M ME + V +W S++K + V D K +Q+ +++ G +
Sbjct: 909 RDAEIMVSEMEEANFKVELAIWNSMLKMYTVIEDYKKTVQVYQR-IKESGLEPDETTYNT 967
Query: 520 LVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDH 579
L+ YC R + + +R L P TY+ LI Q+ + A L +
Sbjct: 968 LIIMYCRDRRPEEGYSLMQQ-MRNLGLDPKLDTYKSLISAFGKQKCLEQAEQLFEELLSK 1026
Query: 580 GFP---PFVDPFIKYVSKSGTSDDAIAFLKGMTSKRF-PSMSVVLCLFAAFFQARRHSEA 635
G F +K SG+ A L+ M + P+++ + L ++ + EA
Sbjct: 1027 GLKLDRSFYHTMMKISRDSGSDSKAEKLLQMMKNAGIEPTLATMHLLMVSYSSSGNPQEA 1086
Query: 636 QDLLS 640
+ +LS
Sbjct: 1087 EKVLS 1091
Score = 44.7 bits (104), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 64/371 (17%), Positives = 168/371 (45%), Gaps = 48/371 (12%)
Query: 145 DEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRNK 204
+ AR FN ++ ++ + ++ N +L + V G ++E + +V+ ++ G+ ++
Sbjct: 804 ERARAIFNTMM-RDGPSPTVESINKLLHALCVDGRLEELYVVVEELQDMGFKISKSSILL 862
Query: 205 MTEKFEKEGLESDLEKL------KGIFATGSIDNSIEKVASRICKVVRSDIWGDDVERQL 258
M + F + G ++ K+ G T + + ++ + +V ++I ++E
Sbjct: 863 MLDAFARAGNIFEVNKIYSSMKAAGYLPTIRLYRMMIELLCKGKRVRDAEIMVSEMEEAN 922
Query: 259 RDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCID 318
+ + N ++K + ++ KK + ++ +ESG ++ DE++YN + + R+ +
Sbjct: 923 FKVELAIWNSMLKMYT--VIEDYKKTVQVYQRIKESG-LEPDETTYNTLIIMYCRDRRPE 979
Query: 319 RFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLL 378
+ ++ +MR+ G + +++T ++ F ++ +++A L+E LL
Sbjct: 980 EGYSLMQQMRNLGLDPKLDTYKSLISAFGKQKCLEQAEQLFEE---------------LL 1024
Query: 379 RKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGG 438
K + +LD + ++++ R++G +D+ + K+L+ M+ G
Sbjct: 1025 SKGL---KLDRSFYHTMMKISRDSG---SDS----------------KAEKLLQMMKNAG 1062
Query: 439 FIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAA 498
+ + SS+G EA + + +++ + ++ + S+I + + D
Sbjct: 1063 IEPTLATMHLLMVSYSSSGNPQEAEKVLSNLKNTEVELTTLPYSSVIDAYLRSKDYKSGI 1122
Query: 499 DCFQKMVEKEG 509
+ +M +KEG
Sbjct: 1123 ERLLEM-KKEG 1132
Score = 43.9 bits (102), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 59/259 (22%), Positives = 103/259 (39%), Gaps = 37/259 (14%)
Query: 307 MASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEF--AMA 364
++SVL + +C D + L + GYE+E +T + +LG +S EA +L EF A
Sbjct: 580 ISSVLVKGECFDLAARQLKVAITNGYELENDTLLSILGSYSSSGRHSEAFELLEFLKEHA 639
Query: 365 CKNKPSVNCCTFLLRKIV--VSKQLDMRLFSKVVRVFRENGNVLTDAMLN---------- 412
+K +N +L V + LD L V + G+ + + +L+
Sbjct: 640 SGSKRLINEALIVLHCKVNNIGAALDEYLADPCVHGWCFGGSTMYETLLHCCVANEHYAE 699
Query: 413 -----------------SVLKALISV----GRMGECNKILKAMEEGGF-IASSNMKSKIA 450
SV K+++ V G +++ E GF A S M + I
Sbjct: 700 ASQVFSELRLSGCEPSESVCKSMVVVYCKLGFPETAYQVVNQAETKGFHFACSPMYTDII 759
Query: 451 FRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGT 510
+A + ++ SG K W SL+ + G ++A F M+ ++G
Sbjct: 760 EAYGKLKLWQKAESVVGNLRQSGRTPDLKTWNSLMSAYAECGCYERARAIFNTMM-RDGP 818
Query: 511 SHAGYAIDLLVNTYCSKNR 529
S +I+ L++ C R
Sbjct: 819 SPTVESINKLLHALCVDGR 837
Score = 40.0 bits (92), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 78/397 (19%), Positives = 159/397 (40%), Gaps = 34/397 (8%)
Query: 267 NDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDE 326
N L+ + G P + SG ++ D +YN + S R+ ++ KV ++
Sbjct: 264 NTLINARLKSGGLTPNLVVELLDMVRNSG-LRPDAITYNTLLSACSRDSNLEGAVKVFED 322
Query: 327 MRSKGYEMEMETCVKVLGRFSERNMVKEAVDLY-EFAMACKNKPSVNCCTFLLRKIVVSK 385
M + + ++ T ++ + + EA L+ E + + +V + L ++
Sbjct: 323 MEAHRCQPDLWTYNAMISVYGRCGLAAEAERLFIELELKGFSPDAVTYNSLL---YAFAR 379
Query: 386 QLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSN- 444
+ + +V + ++ G + N+++ G+ G+ + L+ ++ ++ N
Sbjct: 380 ERNTEKVKEVYQQMQKMGFGKDEMTYNTIIHM---YGKQGQLDLALQLYKDMKGLSGRNP 436
Query: 445 ---MKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCF 501
+ + L A + EA M M G + + +LI G+ AG ++A D F
Sbjct: 437 DAITYTVLIDSLGKANRSVEAAALMSEMLDVGIKPTLQTYSALICGYAKAGKREEAEDTF 496
Query: 502 QKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLL 561
M+ + GT A ++++ N A + + + P H+ YE +I L+
Sbjct: 497 SCML-RSGTKPDNLAYSVMLDVLLRGNETRKAWVLYRDMISDGH-TPSHSLYELMILGLM 554
Query: 562 -------VQRGFKDALSLLCLMKDHGFPPFVDPFIKYVSKSGTSDDAIAFLK-GMTSKRF 613
VQ+ +D + LC G P + K D A LK +T+
Sbjct: 555 KENRSDDVQKTIRD-MEELC-----GMNPL--EISSVLVKGECFDLAARQLKVAITNGYE 606
Query: 614 PSMSVVLCLFAAFFQARRHSEAQDLLSKCPRYVRNHA 650
+L + ++ + RHSEA +LL +++ HA
Sbjct: 607 LENDTLLSILGSYSSSGRHSEAFELL----EFLKEHA 639
>gi|242039157|ref|XP_002466973.1| hypothetical protein SORBIDRAFT_01g017690 [Sorghum bicolor]
gi|241920827|gb|EER93971.1| hypothetical protein SORBIDRAFT_01g017690 [Sorghum bicolor]
Length = 504
Score = 68.9 bits (167), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 84/387 (21%), Positives = 159/387 (41%), Gaps = 18/387 (4%)
Query: 238 ASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFV-------VDKLGDE--PKKALIFF 288
A I +++ D G + L ++ S +LV+ V VD + E PK A FF
Sbjct: 107 ADMIFRILLQDGPGFSARQALDEMRPKVSLELVREVLFRIVVSVDCVNRERYPKLAYKFF 166
Query: 289 RWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSE 348
WA + +H S YN + V + W++ +EM KG + T ++ +
Sbjct: 167 IWAGQQEGYQHGTSMYNLVMKVFAECGEVKAMWRLFEEMMDKGLPVSSRTFHLLICASGK 226
Query: 349 RNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRE-NGNVLT 407
+ + V+ + + +P N +L ++ +Q + + + + +VLT
Sbjct: 227 AGLRRRLVEGFIKSSTFNYRPFRNAFNAILHTLLTIEQYSLIEWVHEKMILEGYSPDVLT 286
Query: 408 DAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMD 467
N V++A +G++ + +++L M G + + + L K A ++
Sbjct: 287 ---YNVVMRAKYMLGKLDQFHRLLDEMGRDGLTPDLHTYNLLLHVLGKGDKPLAALNLLN 343
Query: 468 HMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSK 527
+M G + +LI G AG+L+ F +M+ K+G +++++Y +
Sbjct: 344 YMSDVGCVPNVLHFTNLIDGLGRAGNLEACKYFFDEMI-KKGCDPDVVCYTVMISSYVAA 402
Query: 528 NRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDP 587
+A +F + + L P TY +I+ L F A ++L M HG P
Sbjct: 403 GEFEEAQRFFDDMLLRGQL-PNVYTYNSMIRGLCTVGEFDKAFAMLKDMDSHGCTPNFSV 461
Query: 588 FIKYVSK---SGTSDDAIAFLKGMTSK 611
+ VS+ +G A +K MT K
Sbjct: 462 YSSLVSRLRSAGKDTQANNVIKYMTDK 488
Score = 65.9 bits (159), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 79/362 (21%), Positives = 146/362 (40%), Gaps = 53/362 (14%)
Query: 139 NLESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVA 198
N E P A +FF W ++E + + YNL++++ G V+ W L + M KG V+
Sbjct: 154 NRERYPKLAYKFFIWAGQQEGYQHGTSMYNLVMKVFAECGEVKAMWRLFEEMMDKGLPVS 213
Query: 199 SHVRNKMTEKFEKEGLESDLEKLKGIFATGSID-----NSIEKVASRICKVVRSDIWGDD 253
S + + K GL L ++G + + + N+ + + + + +
Sbjct: 214 SRTFHLLICASGKAGLRRRL--VEGFIKSSTFNYRPFRNAFNAILHTLLTIEQYSLIEWV 271
Query: 254 VERQLRDLNVTFSNDLVKF-VVDKLGDEPKKALIFFRWAEESG--FVKHDESSYNAMASV 310
E+ + + +S D++ + VV + K F R +E G + D +YN + V
Sbjct: 272 HEKMILE---GYSPDVLTYNVVMRAKYMLGKLDQFHRLLDEMGRDGLTPDLHTYNLLLHV 328
Query: 311 LGRED----------------CIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKE 354
LG+ D C+ + + G +E C ++ M+K+
Sbjct: 329 LGKGDKPLAALNLLNYMSDVGCVPNVLHFTNLIDGLGRAGNLEAC-----KYFFDEMIKK 383
Query: 355 AVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRE---NGNVLTDAML 411
D P V C T ++ V + + F + R F + G +
Sbjct: 384 GCD-----------PDVVCYTVMISSYVAAGE-----FEEAQRFFDDMLLRGQLPNVYTY 427
Query: 412 NSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEA 471
NS+++ L +VG + +LK M+ G + ++ S + RL SAGK +AN + +M
Sbjct: 428 NSMIRGLCTVGEFDKAFAMLKDMDSHGCTPNFSVYSSLVSRLRSAGKDTQANNVIKYMTD 487
Query: 472 SG 473
G
Sbjct: 488 KG 489
>gi|255660868|gb|ACU25603.1| pentatricopeptide repeat-containing protein [Verbena macdougalii]
Length = 484
Score = 68.9 bits (167), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 86/391 (21%), Positives = 161/391 (41%), Gaps = 49/391 (12%)
Query: 258 LRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCI 317
+R+L +F ++LV V+ + AL FFRW E S +H+ ++ + +LGR +
Sbjct: 3 IRNLVPSFDHELVYNVLHS-SKTSEHALQFFRWVERSNLFEHNRETHLKIIEILGRASKL 61
Query: 318 DRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFL 377
+ +L +M KG E + + V ++ + + +V+E+V
Sbjct: 62 NHARCILLDMPKKGLEWDEDMWVMMIDSYGKEGIVQESV--------------------- 100
Query: 378 LRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEG 437
++F K+ E G T N++ K ++ GR + M
Sbjct: 101 ------------KMFQKM----EELGVERTIKSYNALFKVILRRGRYMMAKRYFNKMLSE 144
Query: 438 GFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKA 497
G + + + + + +GK + AN F + M++ + ++I G+ +++A
Sbjct: 145 GIEPTRHTFNVMIWGFFLSGKVETANRFFEDMKSREISPDVVTYNTMINGYYRVKKMEEA 204
Query: 498 ADCFQKMVEKEGTSHAGYAIDL--LVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEE 555
F VE +G + + L+ Y S ++ DA + V ++ + +KP TY
Sbjct: 205 EKYF---VEMKGRNIEPTVVTYTTLIKGYVSVDQVDDALRLVEE-MKGFGIKPNAITYST 260
Query: 556 LIKNLLVQRGFKDALSLLCLMKDHGFPPFVDP-FIKYVS---KSGTSDDAIAFLKGMTSK 611
L+ L +A +L M D P + F++ +S KSG D A LK M
Sbjct: 261 LLPGLCNAEKMSEARVILKEMMDKYLAPTDNSIFMRLISSHCKSGNLDAAADVLKAMIRL 320
Query: 612 RFPSMSVVL-CLFAAFFQARRHSEAQDLLSK 641
P+ + L F +A ++ +A LL K
Sbjct: 321 SVPTEAGHYGLLIENFCKAGQYDKAVKLLDK 351
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 107/498 (21%), Positives = 198/498 (39%), Gaps = 81/498 (16%)
Query: 128 FTHEMVLKVLKNLESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLV 187
F HE+V VL + ++S + A +FF WV + +T+ ++ I+G + ++
Sbjct: 10 FDHELVYNVLHSSKTS-EHALQFFRWVERSNLFEHNRETHLKIIEILGRASKLNHARCIL 68
Query: 188 DVMKKKGYGVASHVRNKMTEKFEKEGLESDLEKLKGIFATGSIDNSIEKVASRICKVVRS 247
M KKG + M + + KEG+ + K+ +E++
Sbjct: 69 LDMPKKGLEWDEDMWVMMIDSYGKEGIVQESVKMF---------QKMEELG--------- 110
Query: 248 DIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAM 307
VER ++ N F V+ + G F + E ++ ++N M
Sbjct: 111 ------VERTIKSYNALFK------VILRRGRYMMAKRYFNKMLSEG--IEPTRHTFNVM 156
Query: 308 A---SVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMA 364
+ G+ + +RF+ ++M+S+ ++ T ++ + ++EA + Y M
Sbjct: 157 IWGFFLSGKVETANRFF---EDMKSREISPDVVTYNTMINGYYRVKKMEEA-EKYFVEMK 212
Query: 365 CKN-KPSVNCCTFLLRKIVVSKQLD--MRLFSKVVRVFRENGNVLTDAMLNSVLKALISV 421
+N +P+V T L++ V Q+D +RL ++ + F N +T +++L L +
Sbjct: 213 GRNIEPTVVTYTTLIKGYVSVDQVDDALRLVEEM-KGFGIKPNAIT---YSTLLPGLCNA 268
Query: 422 GRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSA----GKKDEANEFMDHMEASGSDVG 477
+M E ILK M + + N I RL S+ G D A + + M
Sbjct: 269 EKMSEARVILKEMMDKYLAPTDN---SIFMRLISSHCKSGNLDAAADVLKAMIRLSVPTE 325
Query: 478 DKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFV 537
+ LI+ C AG DKA K++EK+ + L + Y
Sbjct: 326 AGHYGLLIENFCKAGQYDKAVKLLDKLIEKDIILRPQSTLHLEPSAY------------- 372
Query: 538 HNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPFIKYVSKSGT 597
N + EY + E + L++ G +D +L L++ H S+ G+
Sbjct: 373 -NPMIEYLCNNGQASKAETLVRQLMKLGVQDPTALNTLIRGH-------------SQEGS 418
Query: 598 SDDAIAFLKGMTSKRFPS 615
D A LK M ++ S
Sbjct: 419 PDSAFELLKIMLRRKVDS 436
>gi|356544698|ref|XP_003540784.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74900,
mitochondrial-like [Glycine max]
Length = 495
Score = 68.9 bits (167), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 97/407 (23%), Positives = 158/407 (38%), Gaps = 52/407 (12%)
Query: 254 VERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAE-ESGFVKHDESSYNAMASVLG 312
V L + ++ DLV V+ +L + KAL FF+ + H SS++ +
Sbjct: 56 VSEALTKPTIQWTPDLVNKVMKRLWNHGPKALQFFKHLDRHHPSYTHSPSSFDHAVDIAA 115
Query: 313 REDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVN 372
R + W ++ MRS + + K L +ER A KP
Sbjct: 116 RMRDFNSAWALVGRMRS----LRLGPSPKTLAILAER-------------YASNGKPHRA 158
Query: 373 CCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALIS------------ 420
TFL +Q D+ F+ ++ + ++ V T +S+LK L S
Sbjct: 159 VRTFLSMAEHGIRQ-DLHSFNTLLDILCKSKRVETA---HSLLKTLTSRFRPDTVTYNIL 214
Query: 421 ------VGRMGECNKILKAMEEGGF---IASSNMKSKIAFRLSSAGKKDEANEFMDHMEA 471
+ R ++LK M + G + + N K FR + + EA EF M+
Sbjct: 215 ANGYCLIKRTPMALRVLKEMVQRGIEPTMVTYNTMLKGYFR---SNQIKEAWEFYLEMKK 271
Query: 472 SGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAI 531
++ + ++I G VAGD+ KA F +MV KEG + L+ C K+
Sbjct: 272 RKCEIDVVTYTTVIHGFGVAGDVKKAKRVFHEMV-KEGVVPNVATYNALIQVLCKKDSVE 330
Query: 532 DACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPF--- 588
+A RE P TY +I+ L + AL + M +HG V +
Sbjct: 331 NAVVVFEEMAREGVCVPNVVTYNVVIRGLCHVGDMERALGFMERMGEHGLRACVQTYNVV 390
Query: 589 IKYVSKSGTSDDAIAFLKGMTSKR-FPSMSVVLCLFAAFFQARRHSE 634
I+Y +G + A+ M P++ L +A F R+ SE
Sbjct: 391 IRYFCDAGEVEKALEVFGKMGDGSCLPNLDTYNVLISAMF-VRKKSE 436
Score = 42.4 bits (98), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 83/418 (19%), Positives = 152/418 (36%), Gaps = 53/418 (12%)
Query: 96 QKESDFTVVSDIFYKFSDVNDISKQLELSGVVFTHEMVLKVLKNLESSPDEARRFFNWV- 154
+ SD T+ + SD +S+ L + +T ++V KV+K L + +A +FF +
Sbjct: 37 EHPSDATIAKLVLE--SDPRTVSEALTKPTIQWTPDLVNKVMKRLWNHGPKALQFFKHLD 94
Query: 155 LEKESERLSSKTYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRNKMTEKFEKEGL 214
S S +++ + I W LV M+ G + + E++ G
Sbjct: 95 RHHPSYTHSPSSFDHAVDIAARMRDFNSAWALVGRMRSLRLGPSPKTLAILAERYASNGK 154
Query: 215 ESDLEKLKGIFATGSID---NSIEKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVK 271
+ A I +S + +CK R + L+ L F D V
Sbjct: 155 PHRAVRTFLSMAEHGIRQDLHSFNTLLDILCKSKRVE----TAHSLLKTLTSRFRPDTVT 210
Query: 272 FVVDKLG----DEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEM 327
+ + G AL + + G ++ +YN M R + I W+ EM
Sbjct: 211 YNILANGYCLIKRTPMALRVLKEMVQRG-IEPTMVTYNTMLKGYFRSNQIKEAWEFYLEM 269
Query: 328 RSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQL 387
+ + E+++ T V+ F VK+A
Sbjct: 270 KKRKCEIDVVTYTTVIHGFGVAGDVKKA-------------------------------- 297
Query: 388 DMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKS 447
R+F ++V+ G V A N++++ L + + + M G + +
Sbjct: 298 -KRVFHEMVK----EGVVPNVATYNALIQVLCKKDSVENAVVVFEEMAREGVCVPNVVTY 352
Query: 448 KIAFR-LSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKM 504
+ R L G + A FM+ M G + + +I+ C AG+++KA + F KM
Sbjct: 353 NVVIRGLCHVGDMERALGFMERMGEHGLRACVQTYNVVIRYFCDAGEVEKALEVFGKM 410
>gi|225443946|ref|XP_002272135.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g65560-like [Vitis vinifera]
Length = 733
Score = 68.9 bits (167), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 93/454 (20%), Positives = 175/454 (38%), Gaps = 42/454 (9%)
Query: 228 GSIDNSIEKVASRICKVVR-SDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALI 286
G D S + IC+++ W +E +LR L + V V+ DE + AL
Sbjct: 61 GGEDESRHPLVREICRLIELRSAWNPKLEGELRHLLRSLKPRQVCAVLQLQTDE-RVALR 119
Query: 287 FFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRF 346
FF WA+ +HD Y AM +L + +VL M + E E V+ +
Sbjct: 120 FFYWADRQWRYRHDPIVYYAMLEILSKTKLCQGAKRVLRLMAKRRIERRPEAFGYVMVSY 179
Query: 347 SERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRL-FSKVVRVFRENGNV 405
S ++ A+ + +P ++ C + +V+ +LD + F + +++ NV
Sbjct: 180 SRAGKLRNAMRVLTMMQKAGIEPDLSICNTAIHVLVMGNRLDKAVRFLERMQIVEIEPNV 239
Query: 406 LT---------------DAM-----------------LNSVLKALISVGRMGECNKIL-K 432
+T DAM +V+ L R+ E ++ K
Sbjct: 240 ITYNCLIKGYCDLHRLEDAMELIAEMPFKGCSPDKISYYTVMGFLCKEKRIKEVRLLMEK 299
Query: 433 AMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAG 492
+++ + + LS G DEA EF+ E V + +++ C G
Sbjct: 300 MLKDSNLLPDQVTYNTFVHMLSKHGHGDEALEFLREAEERRFRVDKVGYSAIVHSFCREG 359
Query: 493 DLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTT 552
+DKA + +M K G ++N C + R +D K + + ++ KP +
Sbjct: 360 RMDKAKEIVNEMFSK-GCIPDVVTYTSVINGLC-QERKVDQAKKMLRQMYKHGCKPNTVS 417
Query: 553 YEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPF---IKYVSKSGTSDDAIAFLKGMT 609
Y L+ L +A ++ + ++ + P + + + G S +A ++ M
Sbjct: 418 YTALLNGLCKNGNSLEAREMMNMSEEDWWIPNAITYSVLMHGFRREGKSSEACDLVREMI 477
Query: 610 SKR-FPSMSVVLCLFAAFFQARRHSEAQDLLSKC 642
K FP+ + L + Q + EA+ + +C
Sbjct: 478 KKGFFPTPVEINLLIQSLCQEEKVDEAKRFMEQC 511
Score = 52.8 bits (125), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 79/327 (24%), Positives = 133/327 (40%), Gaps = 17/327 (5%)
Query: 254 VERQLRDLN-----VTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMA 308
+E+ L+D N VT++ + GDE AL F R AEE F + D+ Y+A+
Sbjct: 297 MEKMLKDSNLLPDQVTYNTFVHMLSKHGHGDE---ALEFLREAEERRF-RVDKVGYSAIV 352
Query: 309 SVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNK 368
RE +D+ ++++EM SKG ++ T V+ + V +A + K
Sbjct: 353 HSFCREGRMDKAKEIVNEMFSKGCIPDVVTYTSVINGLCQERKVDQAKKMLRQMYKHGCK 412
Query: 369 PSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVL-KALISVGRMGEC 427
P+ T LL + + L ++ + E + +A+ SVL G+ E
Sbjct: 413 PNTVSYTALLNGLCKNGN---SLEAREMMNMSEEDWWIPNAITYSVLMHGFRREGKSSEA 469
Query: 428 NKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKG 487
+++ M + GF + + + L K DEA FM+ +G V + ++I G
Sbjct: 470 CDLVREMIKKGFFPTPVEINLLIQSLCQEEKVDEAKRFMEQCLNNGCAVNVVNFTTVIHG 529
Query: 488 HCVAGDLDKAADCFQKM-VEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDL 546
C DL+ A M + + Y +++ K R +A K +R L
Sbjct: 530 FCQKDDLEAALSLLDDMYLSNKHPDVVTYTT--IIDALGKKGRIEEATKLAMKMLR-VGL 586
Query: 547 KPWHTTYEELIKNLLVQRGFKDALSLL 573
P TY +I +D L LL
Sbjct: 587 IPTPVTYRTVIHQYCRMGRVEDLLKLL 613
>gi|255660922|gb|ACU25630.1| pentatricopeptide repeat-containing protein [Dipyrena glaberrima]
Length = 484
Score = 68.9 bits (167), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 85/389 (21%), Positives = 159/389 (40%), Gaps = 45/389 (11%)
Query: 258 LRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCI 317
+R+L F ++LV V+ + AL FFRW E S +H+ ++ + +LGR +
Sbjct: 3 IRNLVPCFDHELVYNVLHG-AKNAEHALQFFRWVERSNLFEHNRETHLKIIEILGRASKL 61
Query: 318 DRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFL 377
+ +L +M KG E + + V ++ + + +V+E+V
Sbjct: 62 NHARCILLDMPKKGLEWDXDMWVLMIDSYGKAGIVQESV--------------------- 100
Query: 378 LRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEG 437
+LF K+ E G T +++ K ++ GR + M
Sbjct: 101 ------------KLFQKM----EELGVERTIKSYDALFKVILRRGRYMMAKRYFNKMLSE 144
Query: 438 GFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKA 497
G + + + + + +GK + AN F + M++ + ++I G+ +++A
Sbjct: 145 GIEPTRHTFNVMIWGFFLSGKVETANRFFEDMKSREISPDVITYNTMINGYYRVKKMEEA 204
Query: 498 ADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELI 557
F +M K + L+ Y S ++ DA + V ++ Y +KP TY L+
Sbjct: 205 EKYFVEMKGKNIEPNV-VTYTTLIKGYVSVDQVDDALRLVEE-MKGYGIKPNAITYSTLL 262
Query: 558 KNLLVQRGFKDALSLLCLMKDHGFPPFVDP-FIKYVS---KSGTSDDAIAFLKGMTSKRF 613
L +A S+L M D P + F++ +S K+G D A LK M
Sbjct: 263 PGLCNAEKMSEARSILKEMLDKYIAPTDNSIFMRLISSQCKAGNLDAAADVLKAMIRLSV 322
Query: 614 PSMSVVL-CLFAAFFQARRHSEAQDLLSK 641
P+ + L + +A ++ +A LL K
Sbjct: 323 PTEAGHYGVLIENYCKAGQYDQAVKLLDK 351
Score = 48.9 bits (115), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 71/309 (22%), Positives = 131/309 (42%), Gaps = 41/309 (13%)
Query: 312 GREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKN-KPS 370
G+ + +RF+ ++M+S+ ++ T ++ + ++EA + Y M KN +P+
Sbjct: 164 GKVETANRFF---EDMKSREISPDVITYNTMINGYYRVKKMEEA-EKYFVEMKGKNIEPN 219
Query: 371 VNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKI 430
V T L++ V Q+D L ++V + G +++L L + +M E I
Sbjct: 220 VVTYTTLIKGYVSVDQVDDAL--RLVEEMKGYGIKPNAITYSTLLPGLCNAEKMSEARSI 277
Query: 431 LKAMEEGGFIASSNMKSKIAFRLSS----AGKKDEANEFMDHMEASGSDVGDKMWVSLIK 486
LK M + +IA ++ + I RL S AG D A + + M + LI+
Sbjct: 278 LKEMLDK-YIAPTD--NSIFMRLISSQCKAGNLDAAADVLKAMIRLSVPTEAGHYGVLIE 334
Query: 487 GHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDL 546
+C AG D+A K++EK D+++ + + A +N + EY
Sbjct: 335 NYCKAGQYDQAVKLLDKLIEK----------DIILRPQSTLHMEPSA----YNXMIEYLC 380
Query: 547 KPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPFIKYVSKSGTSDDAIAFLK 606
E + L++ G +D +L L++ H S+ G+ D A LK
Sbjct: 381 NNGQXAKAETLVRQLLKLGVQDPTALNTLIRGH-------------SREGSPDSAFELLK 427
Query: 607 GMTSKRFPS 615
M ++ S
Sbjct: 428 IMLRRKVDS 436
>gi|255660914|gb|ACU25626.1| pentatricopeptide repeat-containing protein [Phyla dulcis]
Length = 481
Score = 68.9 bits (167), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 88/389 (22%), Positives = 156/389 (40%), Gaps = 45/389 (11%)
Query: 258 LRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCI 317
+R+L +F ++LV + V + AL FFRW E S +HD ++ + +LGR +
Sbjct: 3 IRNLVPSFDHELV-YNVLHAAKTSEHALQFFRWVERSNLFEHDRETHLKIIEILGRASKL 61
Query: 318 DRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFL 377
+ +L +M KG E + + V ++ + + +V+E+V
Sbjct: 62 NHARCILLDMPKKGLEWDEDMWVLMIDSYGKAGIVQESV--------------------- 100
Query: 378 LRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEG 437
+LF K+ E G T +++ K ++ GR + M
Sbjct: 101 ------------KLFQKM----EELGVERTIKSYDALFKVIMRRGRFMMAKRYFNKMLSE 144
Query: 438 GFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKA 497
G + + + + + +GK D A F + M++ + ++I G +D+A
Sbjct: 145 GIEPTRHTFNVMIWGFFLSGKMDTAMRFFEDMKSREISPDVVTYNTMINGCYRVKKMDEA 204
Query: 498 ADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELI 557
F +M K L+ Y S ++ DA + V ++ Y +KP TY L+
Sbjct: 205 EKYFVEMKGK-NIEPTVVTYTTLIKGYVSVDQVHDALRLVEE-MKGYGIKPNAITYSTLL 262
Query: 558 KNLLVQRGFKDALSLLCLMKDHGFPPFVDP-FIKYVS---KSGTSDDAIAFLKGMTSKRF 613
L +A S+L M D P + F++ +S ++G D A LK M
Sbjct: 263 PGLCNAGKMSEAQSILKEMVDKYIAPKDNSIFMRLISSQCEAGNLDAAADVLKAMIRLSV 322
Query: 614 PSMSVVL-CLFAAFFQARRHSEAQDLLSK 641
P+ + L F +A +H A LL K
Sbjct: 323 PTEAGHYGVLIENFCKAGQHDRAVKLLDK 351
Score = 49.3 bits (116), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 110/513 (21%), Positives = 189/513 (36%), Gaps = 111/513 (21%)
Query: 128 FTHEMVLKVLKNLESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLV 187
F HE+V VL ++S + A +FF WV +T+ ++ I+G + ++
Sbjct: 10 FDHELVYNVLHAAKTS-EHALQFFRWVERSNLFEHDRETHLKIIEILGRASKLNHARCIL 68
Query: 188 DVMKKKG--------------YGVASHVRN--KMTEKFEKEGLESDLEKLKGIFATGSID 231
M KKG YG A V+ K+ +K E+ G+E ++ +F
Sbjct: 69 LDMPKKGLEWDEDMWVLMIDSYGKAGIVQESVKLFQKMEELGVERTIKSYDALF------ 122
Query: 232 NSIEKVASR-----ICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALI 286
KV R + K + + + +E NV + +D A+
Sbjct: 123 ----KVIMRRGRFMMAKRYFNKMLSEGIEPTRHTFNVMIWGFFLSGKMDT-------AMR 171
Query: 287 FFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRF 346
FF +S + D +YN M + R +D K EM+ K E + T ++ +
Sbjct: 172 FFE-DMKSREISPDVVTYNTMINGCYRVKKMDEAEKYFVEMKGKNIEPTVVTYTTLIKGY 230
Query: 347 SERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVL 406
+ V +A+ L E KP N T+
Sbjct: 231 VSVDQVHDALRLVEEMKGYGIKP--NAITY------------------------------ 258
Query: 407 TDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSS----AGKKDEA 462
+++L L + G+M E ILK M + +IA + + I RL S AG D A
Sbjct: 259 -----STLLPGLCNAGKMSEAQSILKEMVDK-YIAPKD--NSIFMRLISSQCEAGNLDAA 310
Query: 463 NEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVN 522
+ + M + LI+ C AG D+A K++EK D+++
Sbjct: 311 ADVLKAMIRLSVPTEAGHYGVLIENFCKAGQHDRAVKLLDKLIEK----------DIILR 360
Query: 523 TYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFP 582
+ + A +N + EY T E + L++ G +D +L L++ +
Sbjct: 361 PQSTLHMEPSA----YNPMIEYLCSNGQTAKAEALVRQLLKLGVQDTTALNTLIRGY--- 413
Query: 583 PFVDPFIKYVSKSGTSDDAIAFLKGMTSKRFPS 615
++ G+ D A LK M ++ S
Sbjct: 414 ----------AQEGSPDSAFELLKIMLRRKVDS 436
>gi|242036455|ref|XP_002465622.1| hypothetical protein SORBIDRAFT_01g042420 [Sorghum bicolor]
gi|241919476|gb|EER92620.1| hypothetical protein SORBIDRAFT_01g042420 [Sorghum bicolor]
Length = 817
Score = 68.9 bits (167), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 70/270 (25%), Positives = 112/270 (41%), Gaps = 18/270 (6%)
Query: 282 KKALIFFRWAEESGFVKHDESSYNAMASVLG--REDCIDRFWKVLDEMRSKGYEMEMETC 339
+ AL FFRWA E +H S NAMAS+L + +DR R +
Sbjct: 82 RHALDFFRWAAEQPGFRHSCYSLNAMASLLPPHQRAHLDRLATEALASRCAMTPGALGFL 141
Query: 340 VKVLGRFSERNMVKEAVDLYEFAMACK-NKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRV 398
++ LG + D ++C N + NC L K ++ + RL V
Sbjct: 142 LRRLGAAGLPDTAARVFDAARTTLSCAPNSYTYNCLLDALAKAGRAEDAEARLQEMVASC 201
Query: 399 FRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGK 458
E+ + T L S+L + GR + + +L+ M E ++ ++ + +A S GK
Sbjct: 202 GEESVDRYT---LTSLLNCYCNAGRPEDASAVLQRMSERAWV-DEHVLTMLAVAFSKWGK 257
Query: 459 KDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAID 518
++A E + MEA G +K L+ G G +D A D F KM + G+++D
Sbjct: 258 VEDAVELIGRMEALGMQPSEKTLTVLVHGFARQGRVDVAMDMFDKM------ASYGFSVD 311
Query: 519 L-----LVNTYCSKNRAIDACKFVHNCVRE 543
L L+ C N A K + R+
Sbjct: 312 LAMYSVLIEGLCDGNEMGKAVKLYEDMKRD 341
Score = 47.0 bits (110), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 108/487 (22%), Positives = 180/487 (36%), Gaps = 81/487 (16%)
Query: 144 PDEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRN 203
PD A R F+ S +S TYN +L D + K G A
Sbjct: 151 PDTAARVFDAARTTLSCAPNSYTYNCLL----------------DALAKAGR--AEDAEA 192
Query: 204 KMTEKFEKEGLES-DLEKLKGIFATGSIDNSIEKVASRICKVVRSDIWGDDVERQLRDLN 262
++ E G ES D L + E AS + + + W D E L L
Sbjct: 193 RLQEMVASCGEESVDRYTLTSLLNCYCNAGRPED-ASAVLQRMSERAWVD--EHVLTMLA 249
Query: 263 VTFS-----NDLVKFV--VDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGRED 315
V FS D V+ + ++ LG +P E + + R+
Sbjct: 250 VAFSKWGKVEDAVELIGRMEALGMQPS------------------EKTLTVLVHGFARQG 291
Query: 316 CIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCT 375
+D + D+M S G+ +++ ++ + N + +AV LYE + P V
Sbjct: 292 RVDVAMDMFDKMASYGFSVDLAMYSVLIEGLCDGNEMGKAVKLYEDMKRDRVTPDVR--- 348
Query: 376 FLLRKIVVS--KQLDMRLFSKVVRVFRENGNVLTDA----MLNSVLKALISVGRMGECNK 429
LL+K++ + +Q D FS V EN L + N +L+ L + G + ++
Sbjct: 349 -LLKKMIEAFCRQGD---FSTVGPFINENAVHLKPGSAVLLYNVILEGLTNHGEVEAASQ 404
Query: 430 ILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHC 489
+L +M GG S + + + S K ++ F ++ G C
Sbjct: 405 LLSSMVRGGQRGSDDDTVGVHIVVISEDVKPNSDSFN----------------IVVCGLC 448
Query: 490 VAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPW 549
LD A + MV G + L+ C+ +R +D + N +++ DLKP
Sbjct: 449 KVKKLDLALALTKDMV-GLGCKGKLLMFNDLILELCNSDR-LDEAYEIFNQMKDLDLKPS 506
Query: 550 HTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPFIKYVSK---SGTSDDAIAFLK 606
TY L + ++ A LL M+ P++ + V + SG +A+ FL
Sbjct: 507 EFTYNSLFYGICRRKDTSAAADLLREMRTSSHKPWIKNCTEMVQQLCFSGRITEALQFLD 566
Query: 607 GMTSKRF 613
M F
Sbjct: 567 EMLKLGF 573
Score = 43.9 bits (102), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 59/315 (18%), Positives = 116/315 (36%), Gaps = 46/315 (14%)
Query: 304 YNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAM 363
+N + L D +D +++ ++M+ + T + R A DL
Sbjct: 475 FNDLILELCNSDRLDEAYEIFNQMKDLDLKPSEFTYNSLFYGICRRKDTSAAADLLREMR 534
Query: 364 ACKNKPSVNCCTFLLRKIVVSKQLD--MRLFSKVVRVFRENGNVLTDAMLNSVLKALISV 421
+KP + CT +++++ S ++ ++ +++++ V A +N + K +
Sbjct: 535 TSSHKPWIKNCTEMVQQLCFSGRITEALQFLDEMLKLGFLPDIVTYSAAMNGMCK----I 590
Query: 422 GRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMW 481
G + + + ++ + + AGK DEA E M+ M + G +
Sbjct: 591 GETENALGLFRDISSKCYLPDVVAHNILINGFRKAGKFDEAQEIMEEMLSKGLFPSVVTY 650
Query: 482 VSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCV 541
+I C +G +DKA C KM+++E
Sbjct: 651 NLMIDIWCKSGKIDKAISCVYKMIDEEK-------------------------------- 678
Query: 542 REYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPP---FVDPFIKYVSKSGTS 598
P TY L+ L +A+ L C M + G P FI + K G +
Sbjct: 679 -----PPTVVTYTSLLDGLCNAGRPDEAIILWCKMSEKGCSPNEIAYTAFINGLCKCGRT 733
Query: 599 DDAIAFLKGMTSKRF 613
+ A+ + + M +K F
Sbjct: 734 ETAVNYYEEMKTKCF 748
>gi|168007580|ref|XP_001756486.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162692525|gb|EDQ78882.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 528
Score = 68.9 bits (167), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 76/316 (24%), Positives = 133/316 (42%), Gaps = 11/316 (3%)
Query: 300 DESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLY 359
D +YN + GR +D ++ EM+ KG E + T ++ + V+EA +
Sbjct: 99 DRFAYNVLIRYFGRSGQLDSAMEMFREMKIKGSEPDEYTYGFLVNALGKAGRVQEARSFF 158
Query: 360 EFAMACKNKPSVNCCTFLLRKIVVSKQLDMRL--FSKVVRVFRENGNVLTDAMLNSVLKA 417
+ + P++ L+ QLDM L F+++ R G + N +L A
Sbjct: 159 DAMLERGLTPNIPTYNLLMDAFRKVGQLDMALGLFAEMKR----RGFQPSVVTYNILLDA 214
Query: 418 LISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVG 477
L S GR+G K+ M G S S + L +G+ +EA++ M G V
Sbjct: 215 LCSAGRVGAARKLFHKMTGDGCSPDSYTYSTLVNGLGKSGRVEEAHKVFREMVDRGVAVD 274
Query: 478 DKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFV 537
+ SL+ AG++D+ ++M K G ++ + +++ N+ DA + V
Sbjct: 275 LVNYNSLLATLAKAGNMDRVWKLMKEMSRK-GFHPDAFSFNTIMDALGKANKP-DAAREV 332
Query: 538 HNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPF---IKYVSK 594
+ E KP +Y LI + A +L M + GF P + I +++
Sbjct: 333 FARMVESGCKPDLISYNILIDSYARFGDAAQARQMLEEMVEAGFIPETKTYNSLIHWLAT 392
Query: 595 SGTSDDAIAFLKGMTS 610
G D+A A L+ M +
Sbjct: 393 DGQVDEAFAVLEEMET 408
Score = 58.5 bits (140), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 74/341 (21%), Positives = 137/341 (40%), Gaps = 12/341 (3%)
Query: 307 MASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACK 366
M VL +D +L EM ++G + T VK++ + N +A DL+ A +
Sbjct: 1 MLVVLASWGILDPLETLLKEMVAEGRPLRPNTLVKLITAYGRGNKSGDAFDLFNQAESFA 60
Query: 367 NKPSVNCCTFLLRKIVVSKQLDMR--LFSKVVRVFRENGNVLTDAMLNSVLKALISVGRM 424
P+V+ T L+ +V S + + ++ K+V + G L N +++ G++
Sbjct: 61 CSPTVHAFTKLIDILVNSGEFERAELVYKKLV----QKGCQLDRFAYNVLIRYFGRSGQL 116
Query: 425 GECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSL 484
++ + M+ G + L AG+ EA F D M G + L
Sbjct: 117 DSAMEMFREMKIKGSEPDEYTYGFLVNALGKAGRVQEARSFFDAMLERGLTPNIPTYNLL 176
Query: 485 IKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREY 544
+ G LD A F +M ++ G + ++L++ CS R A K H +
Sbjct: 177 MDAFRKVGQLDMALGLFAEM-KRRGFQPSVVTYNILLDALCSAGRVGAARKLFHKMTGD- 234
Query: 545 DLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFV---DPFIKYVSKSGTSDDA 601
P TY L+ L ++A + M D G + + + ++K+G D
Sbjct: 235 GCSPDSYTYSTLVNGLGKSGRVEEAHKVFREMVDRGVAVDLVNYNSLLATLAKAGNMDRV 294
Query: 602 IAFLKGMTSKRF-PSMSVVLCLFAAFFQARRHSEAQDLLSK 641
+K M+ K F P + A +A + A+++ ++
Sbjct: 295 WKLMKEMSRKGFHPDAFSFNTIMDALGKANKPDAAREVFAR 335
Score = 50.1 bits (118), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 77/361 (21%), Positives = 139/361 (38%), Gaps = 72/361 (19%)
Query: 166 TYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRNKMTEKFEKEGLESDLEKLKGIF 225
TY ++ +G G VQE D M ++G N + + F K G L+ G+F
Sbjct: 137 TYGFLVNALGKAGRVQEARSFFDAMLERGLTPNIPTYNLLMDAFRKVG---QLDMALGLF 193
Query: 226 ATGSIDNSIEKVAS------RICKVVR--------SDIWGDDVERQLRDLNVTFSNDLVK 271
A V + +C R + GD + T+S
Sbjct: 194 AEMKRRGFQPSVVTYNILLDALCSAGRVGAARKLFHKMTGDGCSPD----SYTYST---- 245
Query: 272 FVVDKLGDEPK--KALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRS 329
+V+ LG + +A FR + G V D +YN++ + L + +DR WK++ EM
Sbjct: 246 -LVNGLGKSGRVEEAHKVFREMVDRG-VAVDLVNYNSLLATLAKAGNMDRVWKLMKEMSR 303
Query: 330 KGYEME---METCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQ 386
KG+ + T + LG+ ++ + +E
Sbjct: 304 KGFHPDAFSFNTIMDALGKANKPDAARE-------------------------------- 331
Query: 387 LDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMK 446
+F+++V E+G N ++ + G + ++L+ M E GFI +
Sbjct: 332 ----VFARMV----ESGCKPDLISYNILIDSYARFGDAAQARQMLEEMVEAGFIPETKTY 383
Query: 447 SKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVE 506
+ + L++ G+ DEA ++ ME +G + L+ G+ +AA FQ+M +
Sbjct: 384 NSLIHWLATDGQVDEAFAVLEEMETAGCRPDVVTYNRLMDMLGKRGENQRAARLFQQMKD 443
Query: 507 K 507
K
Sbjct: 444 K 444
>gi|297795031|ref|XP_002865400.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297311235|gb|EFH41659.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 675
Score = 68.9 bits (167), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 78/358 (21%), Positives = 139/358 (38%), Gaps = 47/358 (13%)
Query: 254 VERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGR 313
++ L L + S D+V V+++ + + FF WA V D SY + LGR
Sbjct: 99 IQNCLSSLGIDLSIDIVSDVLNRGNLSGEAMVTFFNWAIREPGVSKDVDSYCVILRALGR 158
Query: 314 EDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNC 373
VL M +G ++ + F + V+ A++L+E + + K S
Sbjct: 159 RKFFSFMMDVLRGMVCEGVNPDLRCLTIAMDSFVRAHYVRRAIELFEESESYGVKCSTES 218
Query: 374 CTFLLRKIVVSKQLDMRLFSKVVRVFR-ENGNVLTDAM-LNSVLKALISVGRMGECNKIL 431
LLR + + S VF + G + D+ N ++ +G + K+L
Sbjct: 219 FNALLRCLCERSHV-----SAANSVFNAKKGKIPFDSCSYNIMISGWSKLGEIEGMEKVL 273
Query: 432 KAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVA 491
K M EGGF+ S + L AG+ +++ E D+M+ GS + ++ ++I A
Sbjct: 274 KEMVEGGFVPDCLSYSHLIEGLGRAGRINDSVEIFDNMKHKGSVLDANVYNAMICNFISA 333
Query: 492 GDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHT 551
D D++ +++M+++E +P
Sbjct: 334 RDFDESMRYYRRMLDEE-------------------------------------CEPNLE 356
Query: 552 TYEELIKNLLVQRGFKDALSLLCLMKDHGFPP---FVDPFIKYVSKSGTSDDAIAFLK 606
TY +L+ L+ R DAL + M G P V F+K + G A+ +
Sbjct: 357 TYSKLVSGLIKGRKVSDALEIFEEMLSRGILPTTGLVTSFLKPLCSYGPPHAAMVIYQ 414
Score = 43.5 bits (101), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 51/218 (23%), Positives = 90/218 (41%), Gaps = 9/218 (4%)
Query: 293 ESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMV 352
E GFV D SY+ + LGR I+ ++ D M+ KG ++ ++ F
Sbjct: 278 EGGFVP-DCLSYSHLIEGLGRAGRINDSVEIFDNMKHKGSVLDANVYNAMICNFISARDF 336
Query: 353 KEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRE---NGNVLTDA 409
E++ Y + + +P++ + L VS + R S + +F E G + T
Sbjct: 337 DESMRYYRRMLDEECEPNLETYSKL-----VSGLIKGRKVSDALEIFEEMLSRGILPTTG 391
Query: 410 MLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHM 469
++ S LK L S G I + + G S + + RLS GK D M
Sbjct: 392 LVTSFLKPLCSYGPPHAAMVIYQKSRKAGCRISESAYKLLLKRLSRFGKCGMLLNVWDEM 451
Query: 470 EASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEK 507
+ G +++ ++ G C+ G L+ A ++ + K
Sbjct: 452 QECGYPSDVEVYEYIVDGLCIIGHLENAVLVMEEAMRK 489
>gi|302785283|ref|XP_002974413.1| hypothetical protein SELMODRAFT_174049 [Selaginella moellendorffii]
gi|300158011|gb|EFJ24635.1| hypothetical protein SELMODRAFT_174049 [Selaginella moellendorffii]
Length = 447
Score = 68.9 bits (167), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 69/295 (23%), Positives = 126/295 (42%), Gaps = 9/295 (3%)
Query: 303 SYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFA 362
+YNA+ + + +D +L EM +G ++ T +L F + N + EA L A
Sbjct: 136 TYNALIDGFRKLERLDEVLMLLKEMSQRGCRADVITYTMILDIFCKNNSIDEAYRLLN-A 194
Query: 363 MACKNKPSVNCCTFLLRKIVVSKQLD-MRLFSKVVRVFRENGNVLTDAMLNSVLKALISV 421
+ +N + N L + + + L K++ + G +VL L
Sbjct: 195 LEKRNVVTYNSLFTALSTAEGDRTTEALSLLEKMI----QEGTRPNQVNYRTVLLMLCKN 250
Query: 422 GRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMW 481
R+ E ++L +M G + +SAG+ ++ E + M SG + K
Sbjct: 251 SRLDEAYQVLLSMYSQGCKTDDVSYKILVVAFASAGRTYDSLELLGRMLGSGYILDTKTM 310
Query: 482 VSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCV 541
+I C AGDL +A F+ M ++ G+ + + L+ +C + A K +H +
Sbjct: 311 NVVIHKFCKAGDLHEAHQLFKSMCQR-GSIPSNVTYNTLIGAFCKAQQPDTAVKLLHQMI 369
Query: 542 REYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHG-FPPFVDPFIKYVSKS 595
+ D KP TY +IK+ ++ ++A + +M D G FP V +SK+
Sbjct: 370 QA-DFKPNVITYNSIIKSFCREQREEEARGIFQMMVDSGCFPDRVSYTTLKISKN 423
Score = 43.9 bits (102), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 76/345 (22%), Positives = 136/345 (39%), Gaps = 44/345 (12%)
Query: 166 TYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRNKMTEKFEK-EGLESDLEKLKGI 224
TY++++ + G E +GLV M KKG N + + F K E L+ L LK +
Sbjct: 101 TYSILVDALCKSGQPHEAYGLVTEMVKKGCSPNVVTYNALIDGFRKLERLDEVLMLLKEM 160
Query: 225 FATGSIDNSIEKVASRICKVVRSDIWGDDVERQLRDL---NVTFSNDLVKFVVDKLGDEP 281
G + I + I + + D+ R L L NV N L + GD
Sbjct: 161 SQRGCRADVI--TYTMILDIFCKNNSIDEAYRLLNALEKRNVVTYNSLFTALSTAEGDRT 218
Query: 282 KKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVK 341
+AL + G + ++ +Y + +L + +D ++VL M S+G + + + K
Sbjct: 219 TEALSLLEKMIQEG-TRPNQVNYRTVLLMLCKNSRLDEAYQVLLSMYSQGCKTD-DVSYK 276
Query: 342 VLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRE 401
+L + FA A + S+ LL +++ S
Sbjct: 277 IL--------------VVAFASAGRTYDSLE----LLGRMLGS----------------- 301
Query: 402 NGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDE 461
G +L +N V+ G + E +++ K+M + G I S+ + + A + D
Sbjct: 302 -GYILDTKTMNVVIHKFCKAGDLHEAHQLFKSMCQRGSIPSNVTYNTLIGAFCKAQQPDT 360
Query: 462 ANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVE 506
A + + M + + S+IK C ++A FQ MV+
Sbjct: 361 AVKLLHQMIQADFKPNVITYNSIIKSFCREQREEEARGIFQMMVD 405
Score = 43.1 bits (100), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 48/191 (25%), Positives = 81/191 (42%), Gaps = 11/191 (5%)
Query: 456 AGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGY 515
AG+ +A E +D M+++G + ++I+G C AG + +A F+++ E + Y
Sbjct: 43 AGEFQQALELLDEMKSNGVRPNVVIHTTIIRGLCTAGKVSQALLHFRRIGEDCAPNVYTY 102
Query: 516 AIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCL 575
+I LV+ C + +A V V++ P TY LI + L LL
Sbjct: 103 SI--LVDALCKSGQPHEAYGLVTEMVKK-GCSPNVVTYNALIDGFRKLERLDEVLMLLKE 159
Query: 576 MKDHGFPPFVDPF---IKYVSKSGTSDDAIAFLKGMTSKRFPSMSVVLCLFAAFFQAR-- 630
M G V + + K+ + D+A L + + + + LF A A
Sbjct: 160 MSQRGCRADVITYTMILDIFCKNNSIDEAYRLLNALEKRNVVTYN---SLFTALSTAEGD 216
Query: 631 RHSEAQDLLSK 641
R +EA LL K
Sbjct: 217 RTTEALSLLEK 227
>gi|255660866|gb|ACU25602.1| pentatricopeptide repeat-containing protein [Verbena bracteata]
Length = 484
Score = 68.9 bits (167), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 79/364 (21%), Positives = 149/364 (40%), Gaps = 48/364 (13%)
Query: 258 LRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCI 317
+R+L +F ++LV V+ + AL FFRW E S +H+ ++ + +LGR +
Sbjct: 3 IRNLVPSFDHELVYNVLHS-SKTSEHALQFFRWVERSNLFEHNRETHLKIIEILGRASKL 61
Query: 318 DRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFL 377
+ +L +M KG E + + V ++ + + +V+E+V
Sbjct: 62 NHARCILLDMPKKGLEWDEDMWVMMIDSYGKEGIVQESV--------------------- 100
Query: 378 LRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEG 437
++F K+ E G T N++ K ++ GR + M
Sbjct: 101 ------------KMFQKM----EELGVERTIKSYNALFKVILRRGRYMMAKRYFNKMLSE 144
Query: 438 GFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKA 497
G + + + + + +GK + AN F + M++ + ++I G+ +++A
Sbjct: 145 GIEPTRHTFNVMIWGFFLSGKVETANRFFEDMKSREISPDVVTYNTMINGYYRVKKMEEA 204
Query: 498 ADCFQKMVEKEGTSHAGYAIDL--LVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEE 555
F VE +G + + L+ Y S ++ DA + V ++ + +KP TY
Sbjct: 205 EKYF---VEMKGRNIEPTVVTYTTLIKGYVSVDQVDDALRLVEE-MKGFGIKPNTITYST 260
Query: 556 LIKNLLVQRGFKDALSLLCLMKDHGFPPFVDP-FIKYVS---KSGTSDDAIAFLKGMTSK 611
L+ L +A +L M D P + F++ +S KSG D A LK M
Sbjct: 261 LLPGLCNAEKMSEARVILKEMMDKYLAPTDNSIFMRLISSHCKSGNPDAAADVLKAMIRL 320
Query: 612 RFPS 615
P+
Sbjct: 321 SVPT 324
Score = 55.5 bits (132), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 79/366 (21%), Positives = 159/366 (43%), Gaps = 22/366 (6%)
Query: 265 FSNDLVKFVVDKLGDEP--KKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWK 322
+ D+ ++D G E ++++ F+ EE G V+ SYNA+ V+ R +
Sbjct: 78 WDEDMWVMMIDSYGKEGIVQESVKMFQKMEELG-VERTIKSYNALFKVILRRGRYMMAKR 136
Query: 323 VLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIV 382
++M S+G E T ++ F V+ A +E + + P V ++
Sbjct: 137 YFNKMLSEGIEPTRHTFNVMIWGFFLSGKVETANRFFEDMKSREISPDVVTYNTMINGYY 196
Query: 383 VSKQLDMRLFSKVVRVFRE-NGNVL--TDAMLNSVLKALISVGRMGECNKILKAMEEGGF 439
K+++ + + F E G + T +++K +SV ++ + ++++ M+ G
Sbjct: 197 RVKKME-----EAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDALRLVEEMKGFGI 251
Query: 440 IASSNMKSKIAFRLSSAGKKDEANEFM-DHMEASGSDVGDKMWVSLIKGHCVAGDLDKAA 498
++ S + L +A K EA + + M+ + + +++ LI HC +G+ D AA
Sbjct: 252 KPNTITYSTLLPGLCNAEKMSEARVILKEMMDKYLAPTDNSIFMRLISSHCKSGNPDAAA 311
Query: 499 DCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCV-REYDLKPWHT------ 551
D + M+ + AG+ L+ N +C + A K + + ++ L+P T
Sbjct: 312 DVLKAMIRLSVPTEAGHYGXLIXN-FCKVGQYDKAVKLLDKLIEKDIILRPQSTLHLEPS 370
Query: 552 TYEELIKNLLVQRGFKDALSLLCLMKDHGF--PPFVDPFIKYVSKSGTSDDAIAFLKGMT 609
Y +I+ L A +L+ + G P ++ I+ S+ G+ D A LK M
Sbjct: 371 AYNPMIEYLCNNGQAXKAETLVRQLXKLGVQDPTALNTLIRGHSQEGSPDSAFELLKIML 430
Query: 610 SKRFPS 615
++ S
Sbjct: 431 RRKVDS 436
>gi|357115764|ref|XP_003559656.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
distachyon]
Length = 867
Score = 68.6 bits (166), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 83/354 (23%), Positives = 143/354 (40%), Gaps = 23/354 (6%)
Query: 297 VKHDESSYNAMA---SVLGREDCIDRFWK----VLDEMRSKGYEMEMETCVKVLGRFSER 349
++ DE +Y AM S LGR WK + EM +G ++ T ++ +
Sbjct: 338 IQPDEVTYTAMIHGYSCLGR-------WKEAAKMFKEMTREGLIPDIVTFNSLMDSLCKH 390
Query: 350 NMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQ-LDMRLFSKVVRVFRENGNVLTD 408
KEA +++ +KP + + LL + +DM + + +NG V
Sbjct: 391 KRSKEAAEIFHSIATKGHKPDIISYSILLHGYATEGRFVDM---NNLFHSMTDNGIVADS 447
Query: 409 AMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDH 468
N ++ A G M E I M G + + + L G+ +A E +
Sbjct: 448 HCFNILINAHAKRGMMDEALLIFTEMRGQGVSPNVVTYATVIAALCRMGRLADAMEKLSQ 507
Query: 469 MEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKN 528
M + G ++ SLI+G C GDL KA + +M+++ ++++ C++
Sbjct: 508 MISIGLKPNTVVYHSLIQGFCTHGDLIKAKELVSEMMDQGIPRPNITFFSSIIHSLCNEG 567
Query: 529 RAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPF 588
R ++A + V N V +P T+ LI + A +L M G P V +
Sbjct: 568 RVMNA-QDVFNLVIHIGDRPDIFTFNSLIDGYCLVGKMDKAFGVLDAMVSAGTEPDVVTY 626
Query: 589 IKYVS---KSGTSDDAIAFLKGMTSKRFPSMSVVLCL-FAAFFQARRHSEAQDL 638
++ KSG DD + + M KR +V L F+A R S A+ +
Sbjct: 627 STLINGYFKSGRIDDGLILFREMLCKRVKPTTVTYSLVLDGLFRAGRTSAAKKM 680
Score = 40.8 bits (94), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 45/199 (22%), Positives = 84/199 (42%), Gaps = 8/199 (4%)
Query: 392 FSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGEC-NKILKAMEEGGFIASSNMKSKIA 450
F++++R ++T N+ LK L R E + +L M E G + + + +
Sbjct: 188 FARLLRAGLRTDGIVT----NTFLKCLCYAKRTDEALSMLLHRMSELGCVPDAFSYNTVI 243
Query: 451 FRLSSAGKKDEANEFMDHM-EASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEG 509
L + EA + + M + G + +I G + G++ KA + F +MV+K G
Sbjct: 244 KSLCGGSRSQEALDMLLRMTKGDGCSPDVVSYTMVIHGLFMEGEISKACNLFNEMVQK-G 302
Query: 510 TSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDA 569
+ +V+ C K RA+D + V + + ++P TY +I +K+A
Sbjct: 303 VVPNVVTYNSIVHALC-KARAMDKAELVLRQMFDNSIQPDEVTYTAMIHGYSCLGRWKEA 361
Query: 570 LSLLCLMKDHGFPPFVDPF 588
+ M G P + F
Sbjct: 362 AKMFKEMTREGLIPDIVTF 380
>gi|240256396|ref|NP_199195.4| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|223635652|sp|P0C8R0.1|PP416_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At5g43820
gi|332007631|gb|AED95014.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 546
Score = 68.6 bits (166), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 77/358 (21%), Positives = 140/358 (39%), Gaps = 47/358 (13%)
Query: 254 VERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGR 313
+++ L L + S D+V V+++ + + FF WA V D SY+ + LGR
Sbjct: 104 IQKSLSSLGIGLSIDIVADVLNRGNLSGEAMVTFFDWAVREPGVTKDVGSYSVILRALGR 163
Query: 314 EDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNC 373
VL M +G ++E + F + V+ A++L+E + + K S
Sbjct: 164 RKLFSFMMDVLKGMVCEGVNPDLECLTIAMDSFVRVHYVRRAIELFEESESFGVKCSTES 223
Query: 374 CTFLLRKIVVSKQLDMRLFSKVVRVFR-ENGNVLTDAM-LNSVLKALISVGRMGECNKIL 431
LLR + + S VF + GN+ D+ N ++ +G + E K+L
Sbjct: 224 FNALLRCLCERSHV-----SAAKSVFNAKKGNIPFDSCSYNIMISGWSKLGEVEEMEKVL 278
Query: 432 KAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVA 491
K M E GF S + L G+ +++ E D+++ G+ ++ ++I A
Sbjct: 279 KEMVESGFGPDCLSYSHLIEGLGRTGRINDSVEIFDNIKHKGNVPDANVYNAMICNFISA 338
Query: 492 GDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHT 551
D D++ +++M+++E +P
Sbjct: 339 RDFDESMRYYRRMLDEE-------------------------------------CEPNLE 361
Query: 552 TYEELIKNLLVQRGFKDALSLLCLMKDHGFPP---FVDPFIKYVSKSGTSDDAIAFLK 606
TY +L+ L+ R DAL + M G P V F+K + G A+ +
Sbjct: 362 TYSKLVSGLIKGRKVSDALEIFEEMLSRGVLPTTGLVTSFLKPLCSYGPPHAAMVIYQ 419
Score = 46.6 bits (109), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 88/424 (20%), Positives = 165/424 (38%), Gaps = 66/424 (15%)
Query: 117 ISKQLELSGVVFTHEMVLKVLKNLESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVGV 176
I K L G+ + ++V VL S + FF+W + + +Y+++LR +G
Sbjct: 104 IQKSLSSLGIGLSIDIVADVLNRGNLSGEAMVTFFDWAVREPGVTKDVGSYSVILRALGR 163
Query: 177 HGLVQEFWGLVDVMKKKGYGVASHVRNKMTEKFEKEGLESDLEKLKGIFATGSIDNSIEK 236
L F ++DV+K G+ EG+ DLE L T ++D+ +
Sbjct: 164 RKL---FSFMMDVLK----GMVC------------EGVNPDLECL-----TIAMDSFV-- 197
Query: 237 VASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGF 296
R+ V R+ ++ E + N L++ + ++ K++ + + G
Sbjct: 198 ---RVHYVRRAIELFEESESFGVKCSTESFNALLRCLCERSHVSAAKSV----FNAKKGN 250
Query: 297 VKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAV 356
+ D SYN M S + ++ KVL EM G+ + + ++ + ++V
Sbjct: 251 IPFDSCSYNIMISGWSKLGEVEEMEKVLKEMVESGFGPDCLSYSHLIEGLGRTGRINDSV 310
Query: 357 DLYEFAMACKNKPSVNC-----CTFL-----------LRKIV--------------VSKQ 386
++++ N P N C F+ R+++ VS
Sbjct: 311 EIFDNIKHKGNVPDANVYNAMICNFISARDFDESMRYYRRMLDEECEPNLETYSKLVSGL 370
Query: 387 LDMRLFSKVVRVFRE---NGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASS 443
+ R S + +F E G + T ++ S LK L S G I + + G S
Sbjct: 371 IKGRKVSDALEIFEEMLSRGVLPTTGLVTSFLKPLCSYGPPHAAMVIYQKSRKAGCRISE 430
Query: 444 NMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQK 503
+ + RLS GK D M+ SG +++ ++ G C+ G L+ A ++
Sbjct: 431 SAYKLLLKRLSRFGKCGMLLNVWDEMQESGYPSDVEVYEYIVDGLCIIGHLENAVLVMEE 490
Query: 504 MVEK 507
+ K
Sbjct: 491 AMRK 494
>gi|255548724|ref|XP_002515418.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223545362|gb|EEF46867.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 1113
Score = 68.6 bits (166), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 118/518 (22%), Positives = 197/518 (38%), Gaps = 51/518 (9%)
Query: 133 VLKVLKNLESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLVDVMKK 192
V+ VL ++ P +A +FN V E +++T N ML I+ +H V
Sbjct: 94 VMAVLNSI-LDPTDAFSYFNSVAEMPFVVHTTETCNHMLEILRIHRRV------------ 140
Query: 193 KGYGVASHVRNKMTEKFEKEGLESDLEKLKGIFATGSIDNSIEKVASRICKVVRSDIWGD 252
G V N M + K L + L KG+F G + + +G
Sbjct: 141 ---GDMVVVFNLMQNQIIKRDLNTYLIIFKGLFIRGGLRQT-------------PFAFGK 184
Query: 253 DVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLG 312
E LN N L+ ++ ++AL +R G +K +++A+ G
Sbjct: 185 MREAGFH-LNAYSYNGLIHLLLQS--GLCREALEMYRRMVLEG-LKPSLKTFSALMVATG 240
Query: 313 REDCIDRFWKVLDEMRSKGYEMEMET---CVKVLGRFSERNMVKEAVDLYEFAMACKNKP 369
+ + +L+EM S G + + T C++VLGR + EA + + P
Sbjct: 241 KRRDTETVKSLLEEMESLGLKPNIYTYTICIRVLGRAGR---IDEACRIMKRMEDDGCGP 297
Query: 370 SVNCCTFLLRKIVVSKQLD--MRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGEC 427
V T L+ + + +LD M LF K+ + V ML+ G +G
Sbjct: 298 DVVTYTVLIDALCTAGKLDDAMELFVKMKASSHKPDRVTYITMLDK----FSDCGDLGRV 353
Query: 428 NKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKG 487
+ ME G+ + + L AG DEA +D M G + +LI G
Sbjct: 354 KEFWSEMEADGYAPDVITFTILVNALCKAGNIDEAFHLLDVMRKQGVLPNLHTYNTLISG 413
Query: 488 HCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLK 547
LD A D F M E G Y L ++ Y R+ A + ++ +
Sbjct: 414 LLRVNRLDDALDLFNNM-ETLGVVPTAYTYILFIDFYGKSGRSDKALETFEK-MKIRGIA 471
Query: 548 PWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPP---FVDPFIKYVSKSGTSDDAIAF 604
P + +L ++A + +K +G P + +K SK+G D+AI
Sbjct: 472 PNIVACNASLYSLAEMGRLREAKVIFNRLKSNGLAPDSVTYNMMMKCYSKAGQVDEAIEL 531
Query: 605 LKGMTSKRF-PSMSVVLCLFAAFFQARRHSEAQDLLSK 641
L M+ + P + V+ L ++A R EA + +
Sbjct: 532 LSDMSENQCEPDIIVINSLINTLYKAGRVDEAWKMFCR 569
Score = 64.7 bits (156), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 82/330 (24%), Positives = 143/330 (43%), Gaps = 16/330 (4%)
Query: 286 IFFRWAEESGFVKHDESSYN-AMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLG 344
+F R+ +E G VK SYN + LG + + W + EM++ G ++ T +L
Sbjct: 776 VFIRFTKELG-VKPTLESYNFLIEGFLGVHN-DEMAWNLFTEMKNAGCAPDVFTYNLLLD 833
Query: 345 RFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLD--MRLFSKVVRVFREN 402
+ + E +LYE + KP+ ++ +V S LD + LF +V +
Sbjct: 834 AHGKSGKINELFELYEQMICSSCKPNTITHNIIIANLVKSNSLDKALDLFYDLV-----S 888
Query: 403 GNV-LTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDE 461
G+ T +L L+ GR+ E ++ + M + G ++ + + + G +
Sbjct: 889 GDFSPTPCTYGPLLDGLLKSGRLEEAKELFEEMVDYGCRPNNAIYNILINGFGKTGDVNT 948
Query: 462 ANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLV 521
A E M G K + SL+ C AG +D A F+K+ ++ G A +L++
Sbjct: 949 ACELFKRMVREGIRPDLKSYTSLVGCLCEAGRVDDALHYFEKL-KQTGLYLDSIAYNLMI 1007
Query: 522 NTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGF 581
+ +R I+ +++ ++ + P TY LI NL V + A L ++ G
Sbjct: 1008 DGLGRSHR-IEEALTLYDEMQSRGINPDLFTYNSLILNLGVAGMVEQAGKLYEELQFIGL 1066
Query: 582 PPFV---DPFIKYVSKSGTSDDAIAFLKGM 608
P V + I+ S SG SD A A K M
Sbjct: 1067 EPNVFTYNALIRGYSMSGNSDSAYAVYKRM 1096
Score = 45.8 bits (107), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 67/349 (19%), Positives = 134/349 (38%), Gaps = 42/349 (12%)
Query: 300 DESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLY 359
D +Y + L +D ++ +M++ ++ + T + +L +FS+ + + +
Sbjct: 298 DVVTYTVLIDALCTAGKLDDAMELFVKMKASSHKPDRVTYITMLDKFSDCGDLGRVKEFW 357
Query: 360 EFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALI 419
A P V T L+ + + +D ++ V R+ G + N+++ L+
Sbjct: 358 SEMEADGYAPDVITFTILVNALCKAGNIDEAF--HLLDVMRKQGVLPNLHTYNTLISGLL 415
Query: 420 SVGRMGECNKILKAMEEGGFIASSNM----------------------KSKI-------- 449
V R+ + + ME G + ++ K KI
Sbjct: 416 RVNRLDDALDLFNNMETLGVVPTAYTYILFIDFYGKSGRSDKALETFEKMKIRGIAPNIV 475
Query: 450 -----AFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKM 504
+ L+ G+ EA + ++++G + ++K + AG +D+A + M
Sbjct: 476 ACNASLYSLAEMGRLREAKVIFNRLKSNGLAPDSVTYNMMMKCYSKAGQVDEAIELLSDM 535
Query: 505 VEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQR 564
E + I+ L+NT R +A K +++ L P TY LI L +
Sbjct: 536 SENQCEPDI-IVINSLINTLYKAGRVDEAWKMFCR-LKDMKLAPTVVTYNTLIAGLGKEG 593
Query: 565 GFKDALSLLCLMKDHGFPPFVDPF---IKYVSKSGTSDDAIAFLKGMTS 610
+ A+ L M +G PP F + + K+ D A+ L MT+
Sbjct: 594 QVQRAMELFASMTGNGCPPNTITFNTILDCLCKNDEVDLALKMLYKMTT 642
Score = 38.9 bits (89), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 49/105 (46%), Gaps = 1/105 (0%)
Query: 284 ALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVL 343
AL +F +++G D +YN M LGR I+ + DEM+S+G ++ T ++
Sbjct: 984 ALHYFEKLKQTGLYL-DSIAYNLMIDGLGRSHRIEEALTLYDEMQSRGINPDLFTYNSLI 1042
Query: 344 GRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLD 388
MV++A LYE +P+V L+R +S D
Sbjct: 1043 LNLGVAGMVEQAGKLYEELQFIGLEPNVFTYNALIRGYSMSGNSD 1087
>gi|334183891|ref|NP_177483.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|193806278|sp|Q9FX35.2|PP117_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g73400, mitochondrial; Flags: Precursor
gi|332197336|gb|AEE35457.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 568
Score = 68.6 bits (166), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 79/388 (20%), Positives = 163/388 (42%), Gaps = 50/388 (12%)
Query: 252 DDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVL 311
DD+E+ L + +V + +V ++ +L E K A FF WA H+ +YN M +L
Sbjct: 110 DDMEKALDESSVDLTTPVVCKILQRLQYEEKTAFRFFTWAGHQEHYSHEPIAYNEMIDIL 169
Query: 312 GREDCIDRFWKVLDEM-----RSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACK 366
++ ++++ +M R+ + ++ +++L ++ ER + + +FA
Sbjct: 170 SSTKYKNKQFRIVIDMLDYMKRNNKTVVLVDVLLEILRKYCERYLTH----VQKFAKR-- 223
Query: 367 NKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGE 426
++I V Q ++ F N +L AL G + E
Sbjct: 224 ------------KRIRVKTQPEINAF-------------------NMLLDALCKCGLVKE 252
Query: 427 CNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIK 486
+L+ M +N + + F +A + ++ M +G + + + I
Sbjct: 253 GEALLRRMRH-RVKPDANTFNVLFFGWCRVRDPKKAMKLLEEMIEAGHKPENFTYCAAID 311
Query: 487 GHCVAGDLDKAADCFQKMVEKEGTSHAGYA--IDLLVNTYCSKNRAIDACKFVHNCVREY 544
C AG +D+AAD F M+ K A A L++ ++A + + + +
Sbjct: 312 TFCQAGMVDEAADLFDFMITKGSAVSAPTAKTFALMIVALAKNDKAEECFELIGRMISTG 371
Query: 545 DLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFV---DPFIKYVSKSGTSDDA 601
L P +TY+++I+ + + +A L M + G+PP + + F++ + ++ +D+A
Sbjct: 372 CL-PDVSTYKDVIEGMCMAEKVDEAYKFLDEMSNKGYPPDIVTYNCFLRVLCENRKTDEA 430
Query: 602 IAFLKGMTSKR-FPSMSVVLCLFAAFFQ 628
+ M R PS+ L + FF+
Sbjct: 431 LKLYGRMVESRCAPSVQTYNMLISMFFE 458
>gi|147846788|emb|CAN80625.1| hypothetical protein VITISV_032617 [Vitis vinifera]
Length = 733
Score = 68.6 bits (166), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 93/457 (20%), Positives = 179/457 (39%), Gaps = 48/457 (10%)
Query: 228 GSIDNSIEKVASRICKVVR-SDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALI 286
G D S + IC+++ W +E +LR L + V V+ DE + AL
Sbjct: 61 GGEDESRHPLVREICRLIELRSAWNPKLEGELRHLLRSLKPRQVCAVLQLQTDE-RVALR 119
Query: 287 FFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRF 346
FF WA+ +HD Y AM +L + +VL M + E E V+ +
Sbjct: 120 FFYWADRQWRYRHDPIVYYAMLEILSKTKLCQGAKRVLRLMAKRRIERRPEAFGYVMVSY 179
Query: 347 SERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRL-FSKVVRVFRENGNV 405
S ++ A+ +P ++ C + +V+ +LD + F + +++ NV
Sbjct: 180 SRAGKLRNAMRXLTMMQKAGIEPDLSICNTAIHVLVMGNRLDKAVRFLERMQIVEIXPNV 239
Query: 406 LTDAMLNSVLKALISVGRMGECNKILKAME-EG------------GFIA----------- 441
+T N ++K + R+ + +++ M +G GF+
Sbjct: 240 IT---YNCLIKGYCDLHRLEDAXELIAEMPFKGCSPDKISYYTVMGFLCKEKRIKELRLL 296
Query: 442 -------SSNMKSKIAFR-----LSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHC 489
S+ + ++ + LS G DEA EF+ E V + +++ C
Sbjct: 297 MEKMLKDSNLLPDQVTYNTFVHMLSKHGHGDEALEFLREAEERRFRVDKVGYSAIVHSFC 356
Query: 490 VAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPW 549
G +DKA + +M K G ++N C + R +D K + + ++ KP
Sbjct: 357 REGRMDKAKEIVNEMFSK-GCIPDVVTYTSVINGLC-QERKVDQAKKMLRQMYKHGCKPN 414
Query: 550 HTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPF---IKYVSKSGTSDDAIAFLK 606
+Y L+ L +A ++ + ++ + P + + + G S +A ++
Sbjct: 415 TVSYTALLNGLCKNGNSLEAREMMNMSEEXWWIPNAITYSVLMHGFRREGKSSEACDLVR 474
Query: 607 GMTSKR-FPSMSVVLCLFAAFFQARRHSEAQDLLSKC 642
M K FP+ + L + Q + EA+ + +C
Sbjct: 475 EMIKKGFFPTPVEINLLIQSLCQEEKVDEAKRFMEQC 511
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 78/327 (23%), Positives = 132/327 (40%), Gaps = 17/327 (5%)
Query: 254 VERQLRDLN-----VTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMA 308
+E+ L+D N VT++ + GDE AL F R AEE F + D+ Y+A+
Sbjct: 297 MEKMLKDSNLLPDQVTYNTFVHMLSKHGHGDE---ALEFLREAEERRF-RVDKVGYSAIV 352
Query: 309 SVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNK 368
RE +D+ ++++EM SKG ++ T V+ + V +A + K
Sbjct: 353 HSFCREGRMDKAKEIVNEMFSKGCIPDVVTYTSVINGLCQERKVDQAKKMLRQMYKHGCK 412
Query: 369 PSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVL-KALISVGRMGEC 427
P+ T LL + + L ++ + E + +A+ SVL G+ E
Sbjct: 413 PNTVSYTALLNGLCKNGN---SLEAREMMNMSEEXWWIPNAITYSVLMHGFRREGKSSEA 469
Query: 428 NKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKG 487
+++ M + GF + + + L K DEA FM+ +G V + ++I G
Sbjct: 470 CDLVREMIKKGFFPTPVEINLLIQSLCQEEKVDEAKRFMEQCLNNGCAVNVVNFTTVIHG 529
Query: 488 HCVAGDLDKAADCFQKM-VEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDL 546
C DL+ A M + + Y +++ K R +A K +R
Sbjct: 530 FCQKDDLEAALSLLDDMYLSNKHPDVVTYTT--IIDALGKKGRIEEATKLAMKMLR-VGW 586
Query: 547 KPWHTTYEELIKNLLVQRGFKDALSLL 573
P TY +I +D L LL
Sbjct: 587 IPTPVTYRTVIHQYCRMGRVEDLLKLL 613
>gi|413949009|gb|AFW81658.1| hypothetical protein ZEAMMB73_233967 [Zea mays]
Length = 637
Score = 68.6 bits (166), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 82/358 (22%), Positives = 139/358 (38%), Gaps = 19/358 (5%)
Query: 239 SRICKVVRSDIWGD---DVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESG 295
R+C + I ++E L L+ +V V+ + + + FFRWA SG
Sbjct: 161 GRVCAAIADVIAAGADANLEAALSALSPPLCEAVVLAVLHRFKHAHRPSYRFFRWATASG 220
Query: 296 FVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEA 355
H +Y M +LG+ + +L EM G + M+ + F+ +K A
Sbjct: 221 GFTHTTITYCKMLLILGKTRQFESMVALLQEMGKAG-TLSMDAFKVAIKSFAAAGEIKNA 279
Query: 356 VDLYEFAMACKNK-----PSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAM 410
V ++E KN S NC L + ++ ++F K++ + + T M
Sbjct: 280 VGVFELMR--KNGFDDGVESFNCLLVALANEGLGREAR-QVFDKMLGQYSPDLRSYTALM 336
Query: 411 LNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHME 470
L A + + E ++ M E G + + + L ++ EA + + M+
Sbjct: 337 L-----AWCNARNLVEAGRVWNEMLEKGMKPDVVVHNTMIEGLLRGQRQHEAVKMFELMK 391
Query: 471 ASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRA 530
A G + LI HC G +D A +CF++M E LLV Y + R
Sbjct: 392 AKGPPPNVWTYTMLICNHCKRGKMDMAMECFEEMQEARCQPDVATYTCLLVG-YGNAKR- 449
Query: 531 IDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPF 588
+D V + + P TY LIK L ++ DA + M G P + +
Sbjct: 450 MDRVTAVLEEMTQKGCPPDARTYNALIKLLTNRKMPDDAARIYKKMIKKGLDPTIHTY 507
Score = 43.1 bits (100), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 82/405 (20%), Positives = 156/405 (38%), Gaps = 50/405 (12%)
Query: 102 TVVSDIFYKFSDVNDISKQLELSGVVFTHEMVLKVLKNLESSPDEARRFFNWVLEKESER 161
++D+ +D N + L +VL VL + + + RFF W
Sbjct: 165 AAIADVIAAGADAN-LEAALSALSPPLCEAVVLAVLHRFKHAHRPSYRFFRWATASGGFT 223
Query: 162 LSSKTYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRNKMTEKFEKEGLESDLEKL 221
++ TY ML I+G ++F +V ++++ G K +++ +
Sbjct: 224 HTTITYCKMLLILGK---TRQFESMVALLQEMG-------------KAGTLSMDAFKVAI 267
Query: 222 KGIFATGSIDNSIEKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEP 281
K A G I N++ + +++R + + D VE +F+ LV + LG E
Sbjct: 268 KSFAAAGEIKNAVG-----VFELMRKNGFDDGVE--------SFNCLLVALANEGLGREA 314
Query: 282 KKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEM---ET 338
++ +F + G D SY A+ + +V +EM KG + ++ T
Sbjct: 315 RQ--VFDKML---GQYSPDLRSYTALMLAWCNARNLVEAGRVWNEMLEKGMKPDVVVHNT 369
Query: 339 CVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRV 398
++ L R ++ EAV ++E A P+V T L+ ++DM +
Sbjct: 370 MIEGLLRGQRQH---EAVKMFELMKAKGPPPNVWTYTMLICNHCKRGKMDM-----AMEC 421
Query: 399 FRENGNVLTDAMLNSVLKALISVG---RMGECNKILKAMEEGGFIASSNMKSKIAFRLSS 455
F E + + L+ G RM +L+ M + G + + + L++
Sbjct: 422 FEEMQEARCQPDVATYTCLLVGYGNAKRMDRVTAVLEEMTQKGCPPDARTYNALIKLLTN 481
Query: 456 AGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADC 500
D+A M G D + ++K + + GD + A C
Sbjct: 482 RKMPDDAARIYKKMIKKGLDPTIHTYNMMMKSYFL-GDRNYAMGC 525
>gi|222628664|gb|EEE60796.1| hypothetical protein OsJ_14385 [Oryza sativa Japonica Group]
Length = 808
Score = 68.6 bits (166), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 64/321 (19%), Positives = 127/321 (39%), Gaps = 5/321 (1%)
Query: 322 KVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKI 381
+V +M S G ++ C + + EA +++ + KP + + +L
Sbjct: 260 RVFKQMSSCGVIPTVDNCNSFIHALFKHGRTNEAKCIFDSMVLKGPKPDIISYSTMLHGY 319
Query: 382 VVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIA 441
+ + + + G + N ++ A G M + I + M+ G I
Sbjct: 320 ATATDSCLADVHNIFNLMLTKGIAPNKHVFNILINAYARCGMMDKAMLIFEDMQNKGMIP 379
Query: 442 SSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCF 501
+ + + L G+ D+A +HM G + ++ LI+G C G+L KA +
Sbjct: 380 DTVTFATVISSLCRIGRLDDALHKFNHMVDIGVPPSEAVYGCLIQGCCNHGELVKAKELI 439
Query: 502 QKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLL 561
+M+ K+ ++N C + R + K + + + + +P T+ L++
Sbjct: 440 SEMMNKDIPPPGVKYFSSIINNLCKEGRVAEG-KDIMDMMVQTGQRPNVVTFNSLMEGYC 498
Query: 562 VQRGFKDALSLLCLMKDHGFPP---FVDPFIKYVSKSGTSDDAIAFLKGMTSKRFPSMSV 618
+ ++A +LL M G P + K+G DDA+ + M K SV
Sbjct: 499 LVGNMEEAFALLDAMASIGIEPNCYIYGTLVDGYCKNGRIDDALTVFRDMLHKGVKPTSV 558
Query: 619 VL-CLFAAFFQARRHSEAQDL 638
+ + FQARR + A+ +
Sbjct: 559 LYSIILHGLFQARRTTAAKKM 579
Score = 43.9 bits (102), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 61/132 (46%), Gaps = 5/132 (3%)
Query: 483 SLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVR 542
S+IK C ++DKA QKMV+ G + + L+++ C K++A+D + V +
Sbjct: 174 SIIKELCKMKEMDKAESIVQKMVDS-GIAPDLFTYSLIIDGLC-KSKAMDKAERVLEQMV 231
Query: 543 EYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVD---PFIKYVSKSGTSD 599
E +P TY LI + + +++ + M G P VD FI + K G ++
Sbjct: 232 EAGTRPNSITYNSLIHGYSISGMWNESVRVFKQMSSCGVIPTVDNCNSFIHALFKHGRTN 291
Query: 600 DAIAFLKGMTSK 611
+A M K
Sbjct: 292 EAKCIFDSMVLK 303
>gi|240255563|ref|NP_190542.4| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|218546755|sp|P0C8A0.1|PP275_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g49730
gi|332645062|gb|AEE78583.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 638
Score = 68.6 bits (166), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 87/381 (22%), Positives = 155/381 (40%), Gaps = 15/381 (3%)
Query: 254 VERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGR 313
+E L + + L+ V+ + GD FF WA + H +M +L +
Sbjct: 84 LELALNESGIDLRPGLIIRVLSRCGDAGNLGYRFFLWATKQPGYFHSYEVCKSMVMILSK 143
Query: 314 EDCIDRFWKVLDEMRSKGYEM-EMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVN 372
W +++EMR E+ E E V ++ RF+ NMVK+AV++ + +P
Sbjct: 144 MRQFGAVWGLIEEMRKTNPELIEPELFVVLMRRFASANMVKKAVEVLDEMPKYGLEPDEY 203
Query: 373 CCTFLLRKIVVSKQLDMRLFSKVVRVFREN--GNVLTDAMLNSVLKALISVGRMGECNKI 430
LL + K ++ SKV RE N+ S+L G++ E ++
Sbjct: 204 VFGCLLD--ALCKNGSVKEASKVFEDMREKFPPNL---RYFTSLLYGWCREGKLMEAKEV 258
Query: 431 LKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHC- 489
L M+E G + + + + AGK +A + M+ M G + + LI+ C
Sbjct: 259 LVQMKEAGLEPDIVVFTNLLSGYAHAGKMADAYDLMNDMRKRGFEPNVNCYTVLIQALCR 318
Query: 490 VAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPW 549
+D+A F +M E+ G L++ +C K ID V + +R+ + P
Sbjct: 319 TEKRMDEAMRVFVEM-ERYGCEADIVTYTALISGFC-KWGMIDKGYSVLDDMRKKGVMPS 376
Query: 550 HTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPP---FVDPFIKYVSKSGTSDDAIAFLK 606
TY +++ + F++ L L+ MK G P + I+ K G +A+
Sbjct: 377 QVTYMQIMVAHEKKEQFEECLELIEKMKRRGCHPDLLIYNVVIRLACKLGEVKEAVRLWN 436
Query: 607 GMTSKRF-PSMSVVLCLFAAF 626
M + P + + + F
Sbjct: 437 EMEANGLSPGVDTFVIMINGF 457
>gi|357494043|ref|XP_003617310.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355518645|gb|AET00269.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 716
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 105/433 (24%), Positives = 170/433 (39%), Gaps = 31/433 (7%)
Query: 166 TYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRNKMTEKFEKEG-LESDLEKLKGI 224
TYN ++ GLV E +GLVD M KG N + KEG E L +
Sbjct: 261 TYNTLVNAYCRRGLVSEAFGLVDCMAGKGLKPGLFTYNALINGLCKEGSYERAKRVLDEM 320
Query: 225 FATGSIDNSIEKVASRICKVVRSDIWGDDVERQLRD-LNVTFSNDLVKF-----VVDKLG 278
G N+ + + D+W + ER + L DL+ F V + G
Sbjct: 321 LGVGLCPNAATFNPMLVESCRKEDVW--EAERVFNEMLQRGVVPDLISFSSIVGVFSRNG 378
Query: 279 DEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMET 338
E +AL +F + G V D Y + + R D + K+ +EM +G M++ T
Sbjct: 379 -ELGRALAYFEKMKGVGLVP-DTVIYTILINGYCRNDDVSGALKMRNEMVERGCVMDVVT 436
Query: 339 CVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLD--MRLF-SKV 395
+L M+ +A +L++ + P T L+ + + LF +
Sbjct: 437 YNTLLNGLCRGKMLDDADELFKEMVERGVFPDFYTLTTLIHGYCKDGNMTKALSLFETMT 496
Query: 396 VRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRL-- 453
+R + +V+T N+++ VG M + ++ M I+ S I+F +
Sbjct: 497 LRSLKP--DVVT---YNTLMDGFCKVGEMEKAKELWYDM-----ISREIFPSYISFSILI 546
Query: 454 ---SSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGT 510
S G EA D M+ G ++IKG+ AG+L KA D M+ EG
Sbjct: 547 NGFCSLGLVSEAFRLWDEMKEKGIKPTLVTCNTIIKGYLRAGNLSKANDFLNTMIS-EGV 605
Query: 511 SHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDAL 570
+ L+N++ K D F+ N + E L P TY ++ ++A
Sbjct: 606 PPDCITYNTLINSFV-KEENFDRAFFLINNMEERGLLPNLVTYNAILGGFSRHGRMQEAE 664
Query: 571 SLLCLMKDHGFPP 583
+L M D G P
Sbjct: 665 MVLHKMIDKGINP 677
Score = 47.4 bits (111), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 58/237 (24%), Positives = 94/237 (39%), Gaps = 4/237 (1%)
Query: 370 SVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNK 429
S+N C LL IV +D L KV F ++GN++ LN ++ AL G++
Sbjct: 188 SINACNALLGAIVKVGWVD--LAWKVYEDFVKSGNIVNVYTLNIMVNALCKDGKLDNVGV 245
Query: 430 ILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHC 489
L MEE G A + + G EA +D M G G + +LI G C
Sbjct: 246 YLSEMEEKGVYADLVTYNTLVNAYCRRGLVSEAFGLVDCMAGKGLKPGLFTYNALINGLC 305
Query: 490 VAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPW 549
G ++A +M+ +A +LV + C K +A + V N + + + P
Sbjct: 306 KEGSYERAKRVLDEMLGVGLCPNAATFNPMLVES-CRKEDVWEAER-VFNEMLQRGVVPD 363
Query: 550 HTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPFIKYVSKSGTSDDAIAFLK 606
++ ++ AL+ MK G P + ++ +DD LK
Sbjct: 364 LISFSSIVGVFSRNGELGRALAYFEKMKGVGLVPDTVIYTILINGYCRNDDVSGALK 420
Score = 43.9 bits (102), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 83/370 (22%), Positives = 126/370 (34%), Gaps = 18/370 (4%)
Query: 277 LGDEPKKALIFFRWAEESGFVKH----DESSYNAMASVLGREDCIDRFWKVLDEMRSKGY 332
LG K + W FVK + + N M + L ++ +D L EM KG
Sbjct: 196 LGAIVKVGWVDLAWKVYEDFVKSGNIVNVYTLNIMVNALCKDGKLDNVGVYLSEMEEKGV 255
Query: 333 EMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLF 392
++ T ++ + R +V EA L + KP + L+ + +
Sbjct: 256 YADLVTYNTLVNAYCRRGLVSEAFGLVDCMAGKGLKPGLFTYNALINGLCKEGS-----Y 310
Query: 393 SKVVRVFREN---GNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKI 449
+ RV E G A N +L + E ++ M + G + S I
Sbjct: 311 ERAKRVLDEMLGVGLCPNAATFNPMLVESCRKEDVWEAERVFNEMLQRGVVPDLISFSSI 370
Query: 450 AFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEG 509
S G+ A + + M+ G ++ LI G+C D+ A +MVE+ G
Sbjct: 371 VGVFSRNGELGRALAYFEKMKGVGLVPDTVIYTILINGYCRNDDVSGALKMRNEMVER-G 429
Query: 510 TSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDA 569
+ L+N C DA + V E + P T LI A
Sbjct: 430 CVMDVVTYNTLLNGLCRGKMLDDADELFKEMV-ERGVFPDFYTLTTLIHGYCKDGNMTKA 488
Query: 570 LSLLCLMKDHGFPPFV---DPFIKYVSKSGTSDDAIAFLKGMTSKR-FPSMSVVLCLFAA 625
LSL M P V + + K G + A M S+ FPS L
Sbjct: 489 LSLFETMTLRSLKPDVVTYNTLMDGFCKVGEMEKAKELWYDMISREIFPSYISFSILING 548
Query: 626 FFQARRHSEA 635
F SEA
Sbjct: 549 FCSLGLVSEA 558
Score = 42.7 bits (99), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 43/188 (22%), Positives = 75/188 (39%), Gaps = 2/188 (1%)
Query: 414 VLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASG 473
+++ + ++ E ++ + + + GF S N + + + G D A + + SG
Sbjct: 160 LIRTYVQARKLREGSEAFQLLRKRGFCVSINACNALLGAIVKVGWVDLAWKVYEDFVKSG 219
Query: 474 SDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDA 533
+ V ++ C G LD +M EK G + LVN YC + +A
Sbjct: 220 NIVNVYTLNIMVNALCKDGKLDNVGVYLSEMEEK-GVYADLVTYNTLVNAYCRRGLVSEA 278
Query: 534 CKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPFIKYVS 593
V +C+ LKP TY LI L + ++ A +L M G P F +
Sbjct: 279 FGLV-DCMAGKGLKPGLFTYNALINGLCKEGSYERAKRVLDEMLGVGLCPNAATFNPMLV 337
Query: 594 KSGTSDDA 601
+S +D
Sbjct: 338 ESCRKEDV 345
>gi|255660876|gb|ACU25607.1| pentatricopeptide repeat-containing protein [Verbena hastata]
Length = 484
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 83/436 (19%), Positives = 170/436 (38%), Gaps = 80/436 (18%)
Query: 258 LRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCI 317
+R+L +F ++LV V+ + + AL FFRW E S +H+ ++ + +LGR +
Sbjct: 3 IRNLVPSFDHELVYNVLHS-SNTSEHALQFFRWVERSNLFEHNRETHLKIIEILGRASKL 61
Query: 318 DRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFL 377
+ +L +M KG E + + V ++ + + +V+E+V +++ + ++ L
Sbjct: 62 NHARCILLDMPKKGLEWDEDMWVMMIDSYGKEGIVQESVKMFQKMEELGVERTIKSYNAL 121
Query: 378 LRKIV------VSKQLDMRLFSKVVRVFRENGNVLTDAML-------------------- 411
+ I+ ++K+ ++ S+ + R NV+
Sbjct: 122 FKVILRRGRYMMAKRYFNKMLSEGIEPTRHTFNVMIWGFFLSGKVETANRFFEDMKSREI 181
Query: 412 -------NSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANE 464
N+++ V +M E K M+ + + + S + D+A
Sbjct: 182 SPDVVTYNTMINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDALR 241
Query: 465 FMDHMEASG------------------------------------SDVGDKMWVSLIKGH 488
++ M+ SG + + +++ LI H
Sbjct: 242 LVEEMKGSGIKPNAITYSTLLPGLCNAEKMSEARVILKEMMDKYLAPTDNSIFMRLISSH 301
Query: 489 CVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCV-REYDLK 547
C +G+LD AAD + M+ + AG+ LL+ +C + A K + + ++ L+
Sbjct: 302 CKSGNLDAAADVLKAMIRLSVPTEAGH-YGLLIEKFCKAGQYDKAVKLLDKLIEKDIILR 360
Query: 548 PWHT------TYEELIKNLLVQRGFKDALSLLCLMKDHGF--PPFVDPFIKYVSKSGTSD 599
P T Y +I+ L A +L+ + G P ++ I+ S+ G+ D
Sbjct: 361 PQSTLHLEPNAYNPMIEYLCNNGQASKAETLVRQLMKLGVQDPTALNTLIRGHSQEGSPD 420
Query: 600 DAIAFLKGMTSKRFPS 615
A LK M ++ S
Sbjct: 421 SAFELLKIMLRRKVDS 436
>gi|224133408|ref|XP_002321560.1| predicted protein [Populus trichocarpa]
gi|222868556|gb|EEF05687.1| predicted protein [Populus trichocarpa]
Length = 491
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 92/395 (23%), Positives = 164/395 (41%), Gaps = 22/395 (5%)
Query: 254 VERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGR 313
+ + L + ++ LV ++ +L ++ KAL FF H SSY+ + R
Sbjct: 54 LAQTLHSPTIQWTPQLVNTILKRLWNDGPKALQFFNLLSHHPSYSHHPSSYDHAIDISAR 113
Query: 314 EDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNC 373
++ MRS +T + R++ AV ++ +
Sbjct: 114 LRDSPSLRSLVYRMRSARLGPTPKTFAIIAERYASAGKPHRAVKVFLSMHQFGCFQDLQS 173
Query: 374 CTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAM-LNSVLKALISVGRMGECNKILK 432
+L + SK+++M + +VF+ G D + N ++ + R + ++LK
Sbjct: 174 FNTILDVLCKSKRVEMAY--NLFKVFK--GKFRADCVSYNVMVNGWCLIKRTNKALEMLK 229
Query: 433 AMEEGGF---IASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHC 489
M + G + S N K FR AG+ +EA +F M+ ++ + ++I G
Sbjct: 230 EMVKRGLTPNLTSYNTMLKGYFR---AGQINEAWDFFLEMKKRDCEIDVITYTTVIHGFG 286
Query: 490 VAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDA-CKFVHNCVREYDLKP 548
VAG++ +A F MV K+G + + + C K+ +A F V+ Y P
Sbjct: 287 VAGEIKRARKVFDTMV-KKGVLPSVATYNAFIQVLCKKDNVDNAIVIFEEMVVKGY--VP 343
Query: 549 WHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPF---IKYVSKSGTSDDAIAFL 605
TY +I+ L + + A+ + MKD G P V + I+Y G D A+
Sbjct: 344 NSITYNLVIRGLCHRGEMERAMEFMGRMKDDGCEPNVQTYNLVIRYFCDEGEIDKALDLF 403
Query: 606 KGMTSKR-FPSMSVVLCLFAAFFQARRHSEAQDLL 639
+ MTS P++ L +A F R+ S+ DLL
Sbjct: 404 QKMTSGDCLPNLDTYNILISAMF-VRKKSD--DLL 435
>gi|147768816|emb|CAN62673.1| hypothetical protein VITISV_031897 [Vitis vinifera]
Length = 653
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 73/351 (20%), Positives = 145/351 (41%), Gaps = 20/351 (5%)
Query: 300 DESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLY 359
D +++ + L E I + D+M +G++ + T ++ + A+ L
Sbjct: 139 DATTFTTLIRGLCVEGKIGEALHLFDKMIGEGFQPNVVTYGTLINGLCKVGNTSAAIRLL 198
Query: 360 EFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRE------NGNVLTDAMLNS 413
+P+V + L+ + +Q+ ++ +F E + N++T NS
Sbjct: 199 RSMEQGNCQPNVVVFSTLIDSLCKDRQV-----TEAFNIFSEMITKGISPNIVT---YNS 250
Query: 414 VLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASG 473
++ L + ++ M + + + + L G EA++ +D M G
Sbjct: 251 LIHGLCKLCEWKHVTTLMNEMVDSKIMPDVFTLNTVVDALCKEGMVAEAHDVVDMMIHRG 310
Query: 474 SDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDA 533
+ + +L+ GHC+ ++D A F MV K+ ++ + + L+N YC K +++D
Sbjct: 311 VEPNVVTYNALMDGHCLRNEVDVAVKVFDTMVHKDCVANV-ISYNTLINGYC-KIQSVDK 368
Query: 534 CKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHG-FPPFVD--PFIK 590
++ + +L P TY LI L +DA+SL M G P V
Sbjct: 369 AMYLFEEMSRQELTPNTVTYNTLIHGLCHVGRLQDAISLFHEMVARGQIPDLVTYRTLSD 428
Query: 591 YVSKSGTSDDAIAFLKGMTSKRF-PSMSVVLCLFAAFFQARRHSEAQDLLS 640
Y+ K+ D A+A LK + + P + + + +A +A+DL S
Sbjct: 429 YLCKNRHLDKAMALLKAIEGSNWDPDIQIYTTILDGMCRAGELEDARDLFS 479
Score = 47.4 bits (111), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 58/269 (21%), Positives = 109/269 (40%), Gaps = 14/269 (5%)
Query: 300 DESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLY 359
D + N + L +E + V+D M +G E + T ++ RN V AV ++
Sbjct: 279 DVFTLNTVVDALCKEGMVAEAHDVVDMMIHRGVEPNVVTYNALMDGHCLRNEVDVAVKVF 338
Query: 360 EFAMACKNKPSVNCCTFLLRKIVVSKQLD--MRLFSKVVRVFRENGNVLTDAMLNSVLKA 417
+ + +V L+ + +D M LF ++ R N +T N+++
Sbjct: 339 DTMVHKDCVANVISYNTLINGYCKIQSVDKAMYLFEEMSRQ-ELTPNTVT---YNTLIHG 394
Query: 418 LISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVG 477
L VGR+ + + M G I ++ L D+A + +E S D
Sbjct: 395 LCHVGRLQDAISLFHEMVARGQIPDLVTYRTLSDYLCKNRHLDKAMALLKAIEGSNWDPD 454
Query: 478 DKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFV 537
+++ +++ G C AG+L+ A D F + K G + +++++ C + +A K
Sbjct: 455 IQIYTTILDGMCRAGELEDARDLFSNLSSK-GLQPNVWTYNIMIHGLCKQGLLAEASKLF 513
Query: 538 HNCVREYDLKPWHTTYEELIKNLLVQRGF 566
+ + P TY L+ RGF
Sbjct: 514 SE-MNKNGCSPNDCTYN------LITRGF 535
Score = 41.2 bits (95), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 61/131 (46%), Gaps = 5/131 (3%)
Query: 515 YAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLC 574
Y + +++N+ C NR +D + + +P TT+ LI+ L V+ +AL L
Sbjct: 106 YTLAIVINSLCHLNR-VDFAFSALAKILKLGHQPDATTFTTLIRGLCVEGKIGEALHLFD 164
Query: 575 LMKDHGFPPFVDPF---IKYVSKSGTSDDAIAFLKGMTSKRF-PSMSVVLCLFAAFFQAR 630
M GF P V + I + K G + AI L+ M P++ V L + + R
Sbjct: 165 KMIGEGFQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPNVVVFSTLIDSLCKDR 224
Query: 631 RHSEAQDLLSK 641
+ +EA ++ S+
Sbjct: 225 QVTEAFNIFSE 235
>gi|255660906|gb|ACU25622.1| pentatricopeptide repeat-containing protein [Junellia uniflora]
Length = 484
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 85/391 (21%), Positives = 161/391 (41%), Gaps = 49/391 (12%)
Query: 258 LRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCI 317
+R+L +F ++LV V+ + AL FFRW E S +H+ ++ + +LGR +
Sbjct: 3 IRNLVSSFDHELVYNVLHS-AKTSEHALQFFRWVERSNLFEHNRETHLKIIEILGRASKL 61
Query: 318 DRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFL 377
+ +L ++ KG E + + V ++ + + +V+E+V
Sbjct: 62 NHARCILLDIPKKGLEWDEDMWVMMIDSYGKEGIVQESV--------------------- 100
Query: 378 LRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEG 437
++F K+ E G T N++ K ++ GR + M
Sbjct: 101 ------------KMFQKM----EELGVERTIKSYNALFKVILRRGRYMMAKRYFNKMLSE 144
Query: 438 GFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKA 497
G + + + + + +GK + AN F + M++ + ++I G+ +++A
Sbjct: 145 GIEPTRHTFNVMIWGFFLSGKVETANRFFEDMKSREISPDVVTYNTIINGYYRVKKMEEA 204
Query: 498 ADCFQKMVEKEGTSHAGYAI--DLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEE 555
F VE +G + + L+ Y S ++ DA + V ++ + +KP TY
Sbjct: 205 EKYF---VEMKGRNIEPTVVTYTTLIKGYVSVDQVDDALRLVEE-MKGFGIKPNAITYST 260
Query: 556 LIKNLLVQRGFKDALSLLCLMKDHGFPPFVDP-FIKYVS---KSGTSDDAIAFLKGMTSK 611
L+ L +A S+L M D P + F++ +S SG D A LK M
Sbjct: 261 LLPGLCNAEKMTEARSILKEMMDKYLAPTDNSIFMRLISSQCNSGNLDAAADVLKAMIRL 320
Query: 612 RFPSMSVVL-CLFAAFFQARRHSEAQDLLSK 641
P+ + L F +A ++ +A LL K
Sbjct: 321 SVPTEAGHYGVLIENFCKAGQYDQAVKLLDK 351
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 105/498 (21%), Positives = 197/498 (39%), Gaps = 81/498 (16%)
Query: 128 FTHEMVLKVLKNLESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLV 187
F HE+V VL + ++S + A +FF WV + +T+ ++ I+G + ++
Sbjct: 10 FDHELVYNVLHSAKTS-EHALQFFRWVERSNLFEHNRETHLKIIEILGRASKLNHARCIL 68
Query: 188 DVMKKKGYGVASHVRNKMTEKFEKEGLESDLEKLKGIFATGSIDNSIEKVASRICKVVRS 247
+ KKG + M + + KEG+ + K+ +E++
Sbjct: 69 LDIPKKGLEWDEDMWVMMIDSYGKEGIVQESVKMF---------QKMEELG--------- 110
Query: 248 DIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAM 307
VER ++ N F V+ + G F + E ++ ++N M
Sbjct: 111 ------VERTIKSYNALFK------VILRRGRYMMAKRYFNKMLSEG--IEPTRHTFNVM 156
Query: 308 A---SVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMA 364
+ G+ + +RF+ ++M+S+ ++ T ++ + ++EA + Y M
Sbjct: 157 IWGFFLSGKVETANRFF---EDMKSREISPDVVTYNTIINGYYRVKKMEEA-EKYFVEMK 212
Query: 365 CKN-KPSVNCCTFLLRKIVVSKQLD--MRLFSKVVRVFRENGNVLTDAMLNSVLKALISV 421
+N +P+V T L++ V Q+D +RL ++ + F N +T +++L L +
Sbjct: 213 GRNIEPTVVTYTTLIKGYVSVDQVDDALRLVEEM-KGFGIKPNAIT---YSTLLPGLCNA 268
Query: 422 GRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSA----GKKDEANEFMDHMEASGSDVG 477
+M E ILK M + + N I RL S+ G D A + + M
Sbjct: 269 EKMTEARSILKEMMDKYLAPTDN---SIFMRLISSQCNSGNLDAAADVLKAMIRLSVPTE 325
Query: 478 DKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFV 537
+ LI+ C AG D+A K++EK+ + L + Y
Sbjct: 326 AGHYGVLIENFCKAGQYDQAVKLLDKLIEKDIILRPQSTLHLEPSAY------------- 372
Query: 538 HNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPFIKYVSKSGT 597
N + EY E + L++ G +D +L L++ H S+ G+
Sbjct: 373 -NPMIEYLCNNGQAAKAEALVRQLLKLGVQDPTALNTLIRGH-------------SQEGS 418
Query: 598 SDDAIAFLKGMTSKRFPS 615
D A LK M ++ S
Sbjct: 419 PDSAFELLKIMLRRKVDS 436
>gi|357151724|ref|XP_003575883.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
chloroplastic-like [Brachypodium distachyon]
Length = 757
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 65/292 (22%), Positives = 124/292 (42%), Gaps = 20/292 (6%)
Query: 300 DESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLY 359
D +++N + L E+ ++ + E+ KG + T ++ + AV L+
Sbjct: 370 DTTTFNTLIVALCTENQLEEALDLARELTVKGLSPNVYTFNILINALCKVGDPHLAVRLF 429
Query: 360 EFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRE---NGNVLTDAMLNSVLK 416
E + P L+ + S +L +K + + +E +G + N+++
Sbjct: 430 EEMKSSGCTPDEVTYNILIDNLCSSGKL-----AKALDLLKEMEVSGCPQSTVTYNTIID 484
Query: 417 ALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDV 476
L R+ E ++ M+ G ++ + + L +A + D+A E +D M + G
Sbjct: 485 GLCKRRRIEEAEEVFDQMDVTGIGRNAITFNTLIDGLCNAERIDDAAELVDQMISEGLQP 544
Query: 477 GDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDL-----LVNTYCSKNRAI 531
+ + S++ +C G++ KAAD Q M G+ +D+ L+N C R
Sbjct: 545 NNVTYNSILTHYCKQGNISKAADILQTMTAN------GFEVDVVTYATLINGLCKARRTQ 598
Query: 532 DACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPP 583
A K + +R +KP Y +I++L +DALSL M + G PP
Sbjct: 599 AALKLLRG-MRMKGMKPTPKAYNPVIQSLFRGNNGRDALSLFREMTEVGGPP 649
Score = 67.8 bits (164), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 75/323 (23%), Positives = 136/323 (42%), Gaps = 17/323 (5%)
Query: 300 DESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLY 359
D +Y+ + + L ++ ++++M G + T ++ N ++EA+DL
Sbjct: 335 DVYTYSTVINCLCNNGELEEAKGIVNQMVDSGCLPDTTTFNTLIVALCTENQLEEALDLA 394
Query: 360 EFAMACKNKPSVNCCTFLLRKI--VVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKA 417
P+V L+ + V L +RLF ++ + +G + N ++
Sbjct: 395 RELTVKGLSPNVYTFNILINALCKVGDPHLAVRLFEEM----KSSGCTPDEVTYNILIDN 450
Query: 418 LISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVG 477
L S G++ + +LK ME G S+ + I L + +EA E D M+ +G
Sbjct: 451 LCSSGKLAKALDLLKEMEVSGCPQSTVTYNTIIDGLCKRRRIEEAEEVFDQMDVTGIGRN 510
Query: 478 DKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSK---NRAIDAC 534
+ +LI G C A +D AA+ +M+ EG + ++ YC + ++A D
Sbjct: 511 AITFNTLIDGLCNAERIDDAAELVDQMI-SEGLQPNNVTYNSILTHYCKQGNISKAADIL 569
Query: 535 KFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPF---VDPFIKY 591
+ + E D+ TY LI L R + AL LL M+ G P +P I+
Sbjct: 570 QTMTANGFEVDV----VTYATLINGLCKARRTQAALKLLRGMRMKGMKPTPKAYNPVIQS 625
Query: 592 VSKSGTSDDAIAFLKGMTSKRFP 614
+ + DA++ + MT P
Sbjct: 626 LFRGNNGRDALSLFREMTEVGGP 648
Score = 52.4 bits (124), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 76/349 (21%), Positives = 128/349 (36%), Gaps = 8/349 (2%)
Query: 297 VKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAV 356
V+ + YN + +VL I EM S+G E ++ T V+ + AV
Sbjct: 157 VQANTEVYNHLLTVLAEGSKIKLLESAYTEMSSQGIEPDVVTFNTVIDALCRARQARTAV 216
Query: 357 DLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLK 416
+ E +C P T L+ V ++ L K E G T +N ++
Sbjct: 217 LMLEEMSSCDVAPDETTFTTLMEGFVEEGSIEAALRLKA--RMSEMGCSPTSVTVNVLIN 274
Query: 417 ALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDV 476
+GR+G+ ++ GF S L G D A + + M G +
Sbjct: 275 GYCKLGRVGDALGYIQQEIADGFEPDRVTFSTFVNGLCQNGHVDHALKVLGLMLQEGCEP 334
Query: 477 GDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKF 536
+ ++I C G+L++A +MV+ G + L+ C++N+ +A
Sbjct: 335 DVYTYSTVINCLCNNGELEEAKGIVNQMVDS-GCLPDTTTFNTLIVALCTENQLEEALDL 393
Query: 537 VHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPP---FVDPFIKYVS 593
+ L P T+ LI L A+ L MK G P + I +
Sbjct: 394 ARELTVK-GLSPNVYTFNILINALCKVGDPHLAVRLFEEMKSSGCTPDEVTYNILIDNLC 452
Query: 594 KSGTSDDAIAFLKGMTSKRFPSMSVVL-CLFAAFFQARRHSEAQDLLSK 641
SG A+ LK M P +V + + RR EA+++ +
Sbjct: 453 SSGKLAKALDLLKEMEVSGCPQSTVTYNTIIDGLCKRRRIEEAEEVFDQ 501
>gi|32489931|emb|CAE05523.1| OSJNBa0038P21.16 [Oryza sativa Japonica Group]
gi|38347491|emb|CAE05839.2| OSJNBa0091C07.1 [Oryza sativa Japonica Group]
Length = 844
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 64/321 (19%), Positives = 127/321 (39%), Gaps = 5/321 (1%)
Query: 322 KVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKI 381
+V +M S G ++ C + + EA +++ + KP + + +L
Sbjct: 336 RVFKQMSSCGVIPTVDNCNSFIHALFKHGRTNEAKCIFDSMVLKGPKPDIISYSTMLHGY 395
Query: 382 VVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIA 441
+ + + + G + N ++ A G M + I + M+ G I
Sbjct: 396 ATATDSCLADVHNIFNLMLTKGIAPNKHVFNILINAYARCGMMDKAMLIFEDMQNKGMIP 455
Query: 442 SSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCF 501
+ + + L G+ D+A +HM G + ++ LI+G C G+L KA +
Sbjct: 456 DTVTFATVISSLCRIGRLDDALHKFNHMVDIGVPPSEAVYGCLIQGCCNHGELVKAKELI 515
Query: 502 QKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLL 561
+M+ K+ ++N C + R + K + + + + +P T+ L++
Sbjct: 516 SEMMNKDIPPPGVKYFSSIINNLCKEGRVAEG-KDIMDMMVQTGQRPNVVTFNSLMEGYC 574
Query: 562 VQRGFKDALSLLCLMKDHGFPP---FVDPFIKYVSKSGTSDDAIAFLKGMTSKRFPSMSV 618
+ ++A +LL M G P + K+G DDA+ + M K SV
Sbjct: 575 LVGNMEEAFALLDAMASIGIEPNCYIYGTLVDGYCKNGRIDDALTVFRDMLHKGVKPTSV 634
Query: 619 VL-CLFAAFFQARRHSEAQDL 638
+ + FQARR + A+ +
Sbjct: 635 LYSIILHGLFQARRTTAAKKM 655
Score = 43.5 bits (101), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 61/132 (46%), Gaps = 5/132 (3%)
Query: 483 SLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVR 542
S+IK C ++DKA QKMV+ G + + L+++ C K++A+D + V +
Sbjct: 250 SIIKELCKMKEMDKAESIVQKMVD-SGIAPDLFTYSLIIDGLC-KSKAMDKAERVLEQMV 307
Query: 543 EYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVD---PFIKYVSKSGTSD 599
E +P TY LI + + +++ + M G P VD FI + K G ++
Sbjct: 308 EAGTRPNSITYNSLIHGYSISGMWNESVRVFKQMSSCGVIPTVDNCNSFIHALFKHGRTN 367
Query: 600 DAIAFLKGMTSK 611
+A M K
Sbjct: 368 EAKCIFDSMVLK 379
>gi|297832366|ref|XP_002884065.1| hypothetical protein ARALYDRAFT_343373 [Arabidopsis lyrata subsp.
lyrata]
gi|297329905|gb|EFH60324.1| hypothetical protein ARALYDRAFT_343373 [Arabidopsis lyrata subsp.
lyrata]
Length = 1056
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 99/434 (22%), Positives = 171/434 (39%), Gaps = 84/434 (19%)
Query: 257 QLRD---LNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEE-SGFVKHDESSYNAMASVLG 312
QLR L+V + +V+ ++D+ AL FRWA GF+ H S+Y A+ L
Sbjct: 19 QLRSSSLLSVPSDDHIVRLILDQ--KSASGALETFRWASTFPGFI-HSRSTYRALFYKLC 75
Query: 313 REDCIDRFWKVLDEM-RSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSV 371
D +++LDEM S G + V ++ F + K + + + KPS+
Sbjct: 76 VFRRFDTVYQLLDEMPESTGLPPDDAIFVTIIRGFGRARLTKRVISVVDLVSKFGIKPSL 135
Query: 372 NCCT----------------FLLRKIVVSK-QLDMRLFS----------------KVVRV 398
F RK++ S Q D + K++++
Sbjct: 136 KVFNSILDVLVKEDIDIAREFFRRKMMASGIQGDEYTYGILMKGLCLTNRIGDGFKLLQI 195
Query: 399 FRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEG--------------------- 437
+ G + N++L AL G++G ++ M+E
Sbjct: 196 MKTCGVAPNTVVYNTLLHALCKNGKVGRARSLMSEMKEPNDVTFNILISAYCNEQKLIQS 255
Query: 438 ----------GFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKG 487
G + +K+ L + G+ EA E ++ +E+ G V +L+KG
Sbjct: 256 MVLLEKCFSLGLVPDVVTVTKVMEVLCNEGRVSEALEVLERVESKGGKVDVVACNTLVKG 315
Query: 488 HCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLK 547
+C G + A FQ+M E++G +LL+ +C +D+ N ++ ++
Sbjct: 316 YCAVGKMRVAQRFFQEM-ERKGYLPNVETYNLLIAGFCDVG-MLDSALDTFNDMKTDAIR 373
Query: 548 PWHTTYEELIKNLLVQRGFKDALSLLCLMKD----HGFPPFVDPF---IKYVSKSGTSDD 600
T+ LI+ L V+ D + +L LM+D HG +DP+ I K +D
Sbjct: 374 WNFATFNTLIRGLSVRGRTDDGIKILELMQDSETVHG--ARIDPYNSVIYGFYKENRWED 431
Query: 601 AIAFLKGMTSKRFP 614
A+ FL M K FP
Sbjct: 432 ALEFLLKM-EKLFP 444
>gi|356557763|ref|XP_003547180.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At5g14820, mitochondrial-like [Glycine max]
Length = 492
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 84/365 (23%), Positives = 157/365 (43%), Gaps = 23/365 (6%)
Query: 240 RICKVVRSDIWGD-DVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVK 298
R+CKV+ D ++E L + V S+DLV ++ + A FF WA +
Sbjct: 68 RVCKVIDELFALDRNMEAVLDECGVRLSHDLVVDMLQRF-KHAXPAFRFFCWAGKRPGFD 126
Query: 299 HDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDL 358
HD +YN M VLGR + +L+EM G + MET + F+E N K+A +
Sbjct: 127 HDSRTYNCMMCVLGRTRQFETMVAMLEEMGEMGL-LTMETFSVAIKTFAEANQRKKAAGI 185
Query: 359 YEFAMACKNKPSVNCCTFLLRKIVVSK-------QLDMRLFSKVV-RVFRENGNVLTDAM 410
++ + K V+ FLL + +K + R++++++ R F+ + V + M
Sbjct: 186 FDLMKKYEFKVGVDVINFLLDSLSAAKLGKEAQAVFEKRVWNEMIDRGFKPD-IVAHNVM 244
Query: 411 LNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKK--DEANEFMDH 468
L +LK + + K+ + M+ S N++S +K E E++D
Sbjct: 245 LEGLLKC-----KKSDAXKLFEIMK--AKCPSPNVRSYTIMIQDFCKQKMMGEVVEYIDE 297
Query: 469 MEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKN 528
M ++ LI G +D + ++M K G S G + L+ S+
Sbjct: 298 MVDRECQPDAALYTCLITGFGXKKKMDMVYNLLKEM-RKRGCSPDGGTYNALIKLXTSQQ 356
Query: 529 RAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPF 588
DA + ++ + + +KP TY ++++ V + ++ ++ M G P + +
Sbjct: 357 MPDDAVR-IYKKMSQSGIKPTIHTYNMIMRSYFVTKNYEIGHAIWDXMHQKGCCPDDNSY 415
Query: 589 IKYVS 593
Y+
Sbjct: 416 SVYIG 420
>gi|225452994|ref|XP_002263091.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g12700, mitochondrial-like [Vitis vinifera]
Length = 588
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 73/347 (21%), Positives = 146/347 (42%), Gaps = 12/347 (3%)
Query: 300 DESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLY 359
D +++ + L E I + D+M +G++ + T ++ + A+ L
Sbjct: 139 DATTFTTLIRGLCVEGKIGEALHLFDKMIGEGFQPNVVTYGTLINGLCKVGNTSAAIRLL 198
Query: 360 EFAMACKNKPSVNCCTFLLRKIVVSKQLD--MRLFSKVVRVFRENGNVLTDAMLNSVLKA 417
+P+V + L+ + +Q+ +FS+++ + N++T NS++
Sbjct: 199 RSMEQGNCQPNVVVFSTLIDSLCKDRQVTEAFNIFSEMI-TKGISPNIVT---YNSLIHG 254
Query: 418 LISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVG 477
L + ++ M + + + + L G EA++ +D M G +
Sbjct: 255 LCKLCEWKHVTTLMNEMVDSKIMPDVFTLNTVVDALCKEGMVAEAHDVVDMMIHRGVEPN 314
Query: 478 DKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFV 537
+ +L+ GHC+ ++D A F MV K+ ++ + + L+N YC K +++D ++
Sbjct: 315 VVTYNALMDGHCLRNEVDVAVKVFDTMVHKDCVANV-ISYNTLINGYC-KIQSVDKAMYL 372
Query: 538 HNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHG-FPPFVD--PFIKYVSK 594
+ +L P TY LI L +DA+SL M G P V Y+ K
Sbjct: 373 FEEMSRQELTPNTVTYNTLIHGLCHVGRLQDAISLFHEMVARGQIPDLVTYRTLSDYLCK 432
Query: 595 SGTSDDAIAFLKGMTSKRF-PSMSVVLCLFAAFFQARRHSEAQDLLS 640
+ D A+A LK + + P + + + +A +A+DL S
Sbjct: 433 NRHLDKAMALLKAIEGSNWDPDIQIYTTILDGMCRAGELEDARDLFS 479
Score = 47.4 bits (111), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 58/269 (21%), Positives = 109/269 (40%), Gaps = 14/269 (5%)
Query: 300 DESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLY 359
D + N + L +E + V+D M +G E + T ++ RN V AV ++
Sbjct: 279 DVFTLNTVVDALCKEGMVAEAHDVVDMMIHRGVEPNVVTYNALMDGHCLRNEVDVAVKVF 338
Query: 360 EFAMACKNKPSVNCCTFLLRKIVVSKQLD--MRLFSKVVRVFRENGNVLTDAMLNSVLKA 417
+ + +V L+ + +D M LF ++ R N +T N+++
Sbjct: 339 DTMVHKDCVANVISYNTLINGYCKIQSVDKAMYLFEEMSRQ-ELTPNTVT---YNTLIHG 394
Query: 418 LISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVG 477
L VGR+ + + M G I ++ L D+A + +E S D
Sbjct: 395 LCHVGRLQDAISLFHEMVARGQIPDLVTYRTLSDYLCKNRHLDKAMALLKAIEGSNWDPD 454
Query: 478 DKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFV 537
+++ +++ G C AG+L+ A D F + K G + +++++ C + +A K
Sbjct: 455 IQIYTTILDGMCRAGELEDARDLFSNLSSK-GLQPNVWTYNIMIHGLCKQGLLAEASKLF 513
Query: 538 HNCVREYDLKPWHTTYEELIKNLLVQRGF 566
+ + P TY L+ RGF
Sbjct: 514 SE-MNKNGCSPNDCTYN------LITRGF 535
Score = 40.8 bits (94), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 61/131 (46%), Gaps = 5/131 (3%)
Query: 515 YAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLC 574
Y + +++N+ C NR +D + + +P TT+ LI+ L V+ +AL L
Sbjct: 106 YTLAIVINSLCHLNR-VDFAFSALAKILKLGHQPDATTFTTLIRGLCVEGKIGEALHLFD 164
Query: 575 LMKDHGFPPFVDPF---IKYVSKSGTSDDAIAFLKGMTSKRF-PSMSVVLCLFAAFFQAR 630
M GF P V + I + K G + AI L+ M P++ V L + + R
Sbjct: 165 KMIGEGFQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPNVVVFSTLIDSLCKDR 224
Query: 631 RHSEAQDLLSK 641
+ +EA ++ S+
Sbjct: 225 QVTEAFNIFSE 235
>gi|255660902|gb|ACU25620.1| pentatricopeptide repeat-containing protein [Junellia spathulata]
Length = 484
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 85/391 (21%), Positives = 160/391 (40%), Gaps = 49/391 (12%)
Query: 258 LRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCI 317
+R+L +F ++LV V+ + AL FFRW E S +H+ ++ + +LGR +
Sbjct: 3 IRNLVPSFDHELVYNVLHS-AKTSEHALQFFRWVERSNLFEHNRETHLKIIEILGRASKL 61
Query: 318 DRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFL 377
+ +L +M KG E + + V ++ + + +V+E+V
Sbjct: 62 NHARCILLDMPKKGLEWDEDMWVMMIDSYGKEGIVQESV--------------------- 100
Query: 378 LRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEG 437
++F K+ E G T N++ ++ GR + M
Sbjct: 101 ------------KMFQKM----EELGVERTIKSYNALFXVILRRGRYMMAKRYFNKMLSE 144
Query: 438 GFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKA 497
G + + + + + +GK + AN F + M++ + ++I G+ +++A
Sbjct: 145 GIEPTRHTFNVMIWGFFLSGKVETANRFFEDMKSREISPDVVTYNTMINGYYRVKKMEEA 204
Query: 498 ADCFQKMVEKEGTSHAGYAI--DLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEE 555
F VE +G + + L+ Y S ++ DA + V ++ + +KP TY
Sbjct: 205 EKYF---VEMKGRNIEPTVVTYTTLIKGYVSVDQVDDALRLVEE-MKGFGIKPNAITYST 260
Query: 556 LIKNLLVQRGFKDALSLLCLMKDHGFPPFVDP-FIKYVS---KSGTSDDAIAFLKGMTSK 611
L+ L +A S+L M D P + F++ +S SG D A LK M
Sbjct: 261 LLPGLCNAEKMTEARSILKEMMDKYLAPTDNSIFMRLISSQCNSGNLDAAADVLKAMIRL 320
Query: 612 RFPSMSVVL-CLFAAFFQARRHSEAQDLLSK 641
P+ + L F +A ++ +A LL K
Sbjct: 321 SVPTEAGHYGVLIENFCKAGQYDQAVKLLDK 351
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 106/498 (21%), Positives = 197/498 (39%), Gaps = 81/498 (16%)
Query: 128 FTHEMVLKVLKNLESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLV 187
F HE+V VL + ++S + A +FF WV + +T+ ++ I+G + ++
Sbjct: 10 FDHELVYNVLHSAKTS-EHALQFFRWVERSNLFEHNRETHLKIIEILGRASKLNHARCIL 68
Query: 188 DVMKKKGYGVASHVRNKMTEKFEKEGLESDLEKLKGIFATGSIDNSIEKVASRICKVVRS 247
M KKG + M + + KEG+ + K+ +E++
Sbjct: 69 LDMPKKGLEWDEDMWVMMIDSYGKEGIVQESVKMF---------QKMEELG--------- 110
Query: 248 DIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAM 307
VER ++ N F V+ + G F + E ++ ++N M
Sbjct: 111 ------VERTIKSYNALFX------VILRRGRYMMAKRYFNKMLSEG--IEPTRHTFNVM 156
Query: 308 A---SVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMA 364
+ G+ + +RF+ ++M+S+ ++ T ++ + ++EA + Y M
Sbjct: 157 IWGFFLSGKVETANRFF---EDMKSREISPDVVTYNTMINGYYRVKKMEEA-EKYFVEMK 212
Query: 365 CKN-KPSVNCCTFLLRKIVVSKQLD--MRLFSKVVRVFRENGNVLTDAMLNSVLKALISV 421
+N +P+V T L++ V Q+D +RL ++ + F N +T +++L L +
Sbjct: 213 GRNIEPTVVTYTTLIKGYVSVDQVDDALRLVEEM-KGFGIKPNAIT---YSTLLPGLCNA 268
Query: 422 GRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSA----GKKDEANEFMDHMEASGSDVG 477
+M E ILK M + + N I RL S+ G D A + + M
Sbjct: 269 EKMTEARSILKEMMDKYLAPTDN---SIFMRLISSQCNSGNLDAAADVLKAMIRLSVPTE 325
Query: 478 DKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFV 537
+ LI+ C AG D+A K++EK+ + L + Y
Sbjct: 326 AGHYGVLIENFCKAGQYDQAVKLLDKLIEKDIILRPQSTLHLEPSAY------------- 372
Query: 538 HNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPFIKYVSKSGT 597
N + EY E + L++ G +D +L L++ H S+ G+
Sbjct: 373 -NPMIEYLCNNGQAAKAEALVRQLLKLGVQDPTALNTLIRGH-------------SQEGS 418
Query: 598 SDDAIAFLKGMTSKRFPS 615
D A LK M ++ S
Sbjct: 419 PDSAFELLKIMLRRKVDS 436
>gi|357455187|ref|XP_003597874.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|124359582|gb|ABD28711.2| Tetratricopeptide-like helical [Medicago truncatula]
gi|355486922|gb|AES68125.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 822
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 94/455 (20%), Positives = 194/455 (42%), Gaps = 53/455 (11%)
Query: 234 IEKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEE 293
I+ + + ++++++ ++ + + + SN + FV+D++ + P+ L FF WA
Sbjct: 27 IKTLIHDVIQILKTNQSHHSLQSRFAESQIIVSN-VAHFVIDRIHN-PQHGLYFFHWAST 84
Query: 294 SGFVKH-DESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMV 352
F + +Y+++ ++ + VL++M+++ ++ +E V+ ++E V
Sbjct: 85 LPFSSPLNNVAYSSLLKLMVKYRLFSEIEIVLEDMKNRNFKPTLEALNSVICVYAEYGFV 144
Query: 353 KEAVDLYEFAMACKNK---PSVNCCTFLLRKIVVSKQLDM--RLFSKVVRVFRENGN--V 405
+AV + F M C+ P V LL +V + ++D+ L+ K++ ++G V
Sbjct: 145 DKAVKM--FYMVCELYNCFPCVVANNSLLNCLVKNGKVDVACELYDKMLERGGDHGLDLV 202
Query: 406 LTDAMLNSVLKALISVGRM---------------------------GECNK--------I 430
+ + + V+K L VG++ G C K +
Sbjct: 203 VDNYSIVIVVKGLCDVGKVEEGRKLIDDRWGNGCVPNVVFYNVIIDGYCKKGDLKRATRV 262
Query: 431 LKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCV 490
+ ++ GF+ + + AGK ++ ++ M G +V K++ S+I
Sbjct: 263 FEELKLKGFLPTLETYGALIDGFCKAGKFQVVDQLLNEMNVMGLNVNVKVFNSIIDAKYK 322
Query: 491 AGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWH 550
G +DKAA+ + M E G ++L+N CS R +A +F+ +E L P
Sbjct: 323 YGLVDKAAEMMRMMTEM-GCEPDITTYNILINFSCSGGRIKEAEEFLER-AKERTLLPNK 380
Query: 551 TTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPFIKYVSKS---GTSDDAIAFLKG 607
+Y L+ Q + A +L + + G P + + ++ S G D A+ +
Sbjct: 381 FSYTPLMHAYCKQGDYVMASDMLFKIAETGDKPDLVSYGAFIHGSVAGGEIDVALMVREK 440
Query: 608 MTSKR-FPSMSVVLCLFAAFFQARRHSEAQDLLSK 641
M K FP + L + + R A+ LLS+
Sbjct: 441 MMEKGVFPDAQIYNVLMSGLCKKGRFPAAKLLLSE 475
Score = 46.6 bits (109), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 100/487 (20%), Positives = 196/487 (40%), Gaps = 32/487 (6%)
Query: 143 SPDEARRFFNWVLEKE-SERLSSKTYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHV 201
+P FF+W S L++ Y+ +L+++ + L E +++ MK + +
Sbjct: 71 NPQHGLYFFHWASTLPFSSPLNNVAYSSLLKLMVKYRLFSEIEIVLEDMKNRNFKPTLEA 130
Query: 202 RNKMTEKFEKEGLESDLEK-------LKGIFATGSIDNSIEKVASRICKV-VRSDIWGDD 253
N + + + G K L F +NS+ + KV V +++
Sbjct: 131 LNSVICVYAEYGFVDKAVKMFYMVCELYNCFPCVVANNSLLNCLVKNGKVDVACELYDKM 190
Query: 254 VERQL-RDLNVTFSNDLVKFVVDKLGD----EPKKALIFFRWAEESGFVKHDESSYNAMA 308
+ER L++ N + VV L D E + LI RW +G V + YN +
Sbjct: 191 LERGGDHGLDLVVDNYSIVIVVKGLCDVGKVEEGRKLIDDRWG--NGCVP-NVVFYNVII 247
Query: 309 SVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNK 368
++ + R +V +E++ KG+ +ET ++ F + + VD M N
Sbjct: 248 DGYCKKGDLKRATRVFEELKLKGFLPTLETYGALIDGFCKAGKF-QVVDQLLNEM---NV 303
Query: 369 PSVNCCTFLLRKIVVSKQ----LDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRM 424
+N + I+ +K +D ++++R+ E G N ++ S GR+
Sbjct: 304 MGLNVNVKVFNSIIDAKYKYGLVDKA--AEMMRMMTEMGCEPDITTYNILINFSCSGGRI 361
Query: 425 GECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSL 484
E + L+ +E + + + + G A++ + + +G + +
Sbjct: 362 KEAEEFLERAKERTLLPNKFSYTPLMHAYCKQGDYVMASDMLFKIAETGDKPDLVSYGAF 421
Query: 485 IKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREY 544
I G G++D A +KM+EK G ++L++ C K R A K + + + +
Sbjct: 422 IHGSVAGGEIDVALMVREKMMEK-GVFPDAQIYNVLMSGLCKKGR-FPAAKLLLSEMLDL 479
Query: 545 DLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFV---DPFIKYVSKSGTSDDA 601
+L+P Y L+ + A L ++ G P V + IK + K G DA
Sbjct: 480 NLQPDAYMYATLVDGFIRNNELDKATELFEVVMSKGIDPGVVGYNVMIKGLCKCGKMTDA 539
Query: 602 IAFLKGM 608
++++ M
Sbjct: 540 VSYVNKM 546
>gi|218194637|gb|EEC77064.1| hypothetical protein OsI_15455 [Oryza sativa Indica Group]
Length = 864
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 64/321 (19%), Positives = 127/321 (39%), Gaps = 5/321 (1%)
Query: 322 KVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKI 381
+V +M S G ++ C + + EA +++ + KP + + +L
Sbjct: 316 RVFKQMSSCGVIPTVDNCNSFIHALFKHGRTNEAKCIFDSMVLKGPKPDIISYSTMLHGY 375
Query: 382 VVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIA 441
+ + + + G + N ++ A G M + I + M+ G I
Sbjct: 376 ATATDSCLADVHNIFNLMLTKGIAPNKHVFNILINAYARCGMMDKAMLIFEDMQNKGMIP 435
Query: 442 SSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCF 501
+ + + L G+ D+A +HM G + ++ LI+G C G+L KA +
Sbjct: 436 DTVTFATVISSLCRIGRLDDALHKFNHMVDIGVPPSEAVYGCLIQGCCNHGELVKAKELI 495
Query: 502 QKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLL 561
+M+ K+ ++N C + R + K + + + + +P T+ L++
Sbjct: 496 SEMMNKDIPPPGVKYFSSIINNLCKEGRVAEG-KDIMDMMVQTGQRPNVVTFNSLMEGYC 554
Query: 562 VQRGFKDALSLLCLMKDHGFPP---FVDPFIKYVSKSGTSDDAIAFLKGMTSKRFPSMSV 618
+ ++A +LL M G P + K+G DDA+ + M K SV
Sbjct: 555 LVGNMEEAFALLDAMASIGIEPNCYIYGTLVDGYCKNGRIDDALTVFRDMLHKGVKPTSV 614
Query: 619 VL-CLFAAFFQARRHSEAQDL 638
+ + FQARR + A+ +
Sbjct: 615 LYSIILHGLFQARRTTAAKKM 635
Score = 43.1 bits (100), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 61/132 (46%), Gaps = 5/132 (3%)
Query: 483 SLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVR 542
S+IK C ++DKA QKMV+ G + + L+++ C K++A+D + V +
Sbjct: 230 SIIKELCKMKEMDKAESIVQKMVDS-GIAPDLFTYSLIIDGLC-KSKAMDKAERVLEQMV 287
Query: 543 EYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVD---PFIKYVSKSGTSD 599
E +P TY LI + + +++ + M G P VD FI + K G ++
Sbjct: 288 EAGTRPNSITYNSLIHGYSISGMWNESVRVFKQMSSCGVIPTVDNCNSFIHALFKHGRTN 347
Query: 600 DAIAFLKGMTSK 611
+A M K
Sbjct: 348 EAKCIFDSMVLK 359
>gi|302808035|ref|XP_002985712.1| hypothetical protein SELMODRAFT_181879 [Selaginella moellendorffii]
gi|300146621|gb|EFJ13290.1| hypothetical protein SELMODRAFT_181879 [Selaginella moellendorffii]
Length = 447
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 66/285 (23%), Positives = 123/285 (43%), Gaps = 9/285 (3%)
Query: 303 SYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFA 362
+YNA+ + + +D +L EM +G ++ T +L F + N + EA L A
Sbjct: 136 TYNALIDGFRKLERLDEVLMLLKEMSQRGCRADVITYTMILDIFCKNNSIDEAYRLLN-A 194
Query: 363 MACKNKPSVNCCTFLLRKIVVSKQLD-MRLFSKVVRVFRENGNVLTDAMLNSVLKALISV 421
+ +N + N L + + + L K++ + G +VL L
Sbjct: 195 LEKRNVVTYNSLFTALSTAEGDRTTEALSLLEKMI----QEGTRPNQVNYRTVLLMLCKN 250
Query: 422 GRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMW 481
R+ E ++L +M G + ++AG+ ++ E + M SG + K
Sbjct: 251 SRLDEAYQVLLSMYSQGCKTDDVSYKILVVAFANAGRTYDSLELLGRMLGSGYILDTKTM 310
Query: 482 VSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCV 541
+I C AGDL +A F+ M ++ G+ + + L+ +C + A K +H +
Sbjct: 311 NVVIHKFCKAGDLHEAHQLFKSMYQR-GSIPSNVTYNTLIGAFCKAQQPDTAVKLLHQMI 369
Query: 542 REYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHG-FPPFV 585
+ D KP TY +IK+ ++ ++A + +M D+G FP V
Sbjct: 370 QA-DFKPNVITYNSIIKSFCREQREEEARGIFQMMVDNGCFPDRV 413
Score = 43.1 bits (100), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 76/345 (22%), Positives = 135/345 (39%), Gaps = 44/345 (12%)
Query: 166 TYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRNKMTEKFEK-EGLESDLEKLKGI 224
TY+ ++ + G E +GLV M KKG N + + F K E L+ L LK +
Sbjct: 101 TYSTLVDALCKSGQPHEAYGLVTEMVKKGCSPNVVTYNALIDGFRKLERLDEVLMLLKEM 160
Query: 225 FATGSIDNSIEKVASRICKVVRSDIWGDDVERQLRDL---NVTFSNDLVKFVVDKLGDEP 281
G + I + I + + D+ R L L NV N L + GD
Sbjct: 161 SQRGCRADVI--TYTMILDIFCKNNSIDEAYRLLNALEKRNVVTYNSLFTALSTAEGDRT 218
Query: 282 KKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVK 341
+AL + G + ++ +Y + +L + +D ++VL M S+G + + + K
Sbjct: 219 TEALSLLEKMIQEG-TRPNQVNYRTVLLMLCKNSRLDEAYQVLLSMYSQGCKTD-DVSYK 276
Query: 342 VLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRE 401
+L + FA A + S+ LL +++ S
Sbjct: 277 IL--------------VVAFANAGRTYDSLE----LLGRMLGS----------------- 301
Query: 402 NGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDE 461
G +L +N V+ G + E +++ K+M + G I S+ + + A + D
Sbjct: 302 -GYILDTKTMNVVIHKFCKAGDLHEAHQLFKSMYQRGSIPSNVTYNTLIGAFCKAQQPDT 360
Query: 462 ANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVE 506
A + + M + + S+IK C ++A FQ MV+
Sbjct: 361 AVKLLHQMIQADFKPNVITYNSIIKSFCREQREEEARGIFQMMVD 405
Score = 42.0 bits (97), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 47/191 (24%), Positives = 79/191 (41%), Gaps = 11/191 (5%)
Query: 456 AGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGY 515
AG+ +A E +D M+++G + ++I+G C AG + +A F+++ E + Y
Sbjct: 43 AGEFQQALELLDEMKSNGVRPNVVIHTTIIRGLCTAGKVSQALLHFRRI--GEDCAPNVY 100
Query: 516 AIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCL 575
LV+ C + +A V V++ P TY LI + L LL
Sbjct: 101 TYSTLVDALCKSGQPHEAYGLVTEMVKK-GCSPNVVTYNALIDGFRKLERLDEVLMLLKE 159
Query: 576 MKDHGFPPFVDPF---IKYVSKSGTSDDAIAFLKGMTSKRFPSMSVVLCLFAAFFQAR-- 630
M G V + + K+ + D+A L + + + + LF A A
Sbjct: 160 MSQRGCRADVITYTMILDIFCKNNSIDEAYRLLNALEKRNVVTYN---SLFTALSTAEGD 216
Query: 631 RHSEAQDLLSK 641
R +EA LL K
Sbjct: 217 RTTEALSLLEK 227
>gi|6723418|emb|CAB66911.1| putative protein [Arabidopsis thaliana]
Length = 1184
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 87/381 (22%), Positives = 155/381 (40%), Gaps = 15/381 (3%)
Query: 254 VERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGR 313
+E L + + L+ V+ + GD FF WA + H +M +L +
Sbjct: 84 LELALNESGIDLRPGLIIRVLSRCGDAGNLGYRFFLWATKQPGYFHSYEVCKSMVMILSK 143
Query: 314 EDCIDRFWKVLDEMRSKGYEM-EMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVN 372
W +++EMR E+ E E V ++ RF+ NMVK+AV++ + +P
Sbjct: 144 MRQFGAVWGLIEEMRKTNPELIEPELFVVLMRRFASANMVKKAVEVLDEMPKYGLEPDEY 203
Query: 373 CCTFLLRKIVVSKQLDMRLFSKVVRVFREN--GNVLTDAMLNSVLKALISVGRMGECNKI 430
LL + K ++ SKV RE N+ S+L G++ E ++
Sbjct: 204 VFGCLLDALC--KNGSVKEASKVFEDMREKFPPNL---RYFTSLLYGWCREGKLMEAKEV 258
Query: 431 LKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHC- 489
L M+E G + + + + AGK +A + M+ M G + + LI+ C
Sbjct: 259 LVQMKEAGLEPDIVVFTNLLSGYAHAGKMADAYDLMNDMRKRGFEPNVNCYTVLIQALCR 318
Query: 490 VAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPW 549
+D+A F +M E+ G L++ +C K ID V + +R+ + P
Sbjct: 319 TEKRMDEAMRVFVEM-ERYGCEADIVTYTALISGFC-KWGMIDKGYSVLDDMRKKGVMPS 376
Query: 550 HTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPP---FVDPFIKYVSKSGTSDDAIAFLK 606
TY +++ + F++ L L+ MK G P + I+ K G +A+
Sbjct: 377 QVTYMQIMVAHEKKEQFEECLELIEKMKRRGCHPDLLIYNVVIRLACKLGEVKEAVRLWN 436
Query: 607 GMTSKRF-PSMSVVLCLFAAF 626
M + P + + + F
Sbjct: 437 EMEANGLSPGVDTFVIMINGF 457
>gi|358348674|ref|XP_003638369.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355504304|gb|AES85507.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 501
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 91/405 (22%), Positives = 167/405 (41%), Gaps = 32/405 (7%)
Query: 233 SIEKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVV----DKLGDEPKK----- 283
S++ A R +V+R D G D L +L + S LV+ V+ + E K
Sbjct: 84 SVKLDAKRALEVLRQDGPGLDARLVLEELGIRPSGILVREVLFGILKNINSENKTRCAKL 143
Query: 284 ALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVL 343
A FF W + +H ++Y+ + ++ W+++DEM KGY+ T ++
Sbjct: 144 AYKFFVWCGQQEDYRHTANAYHLIMNIYAECKEFKALWRLVDEMIGKGYKATARTFNILI 203
Query: 344 GRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENG 403
E + K V+ + + + +P + +L +V Q +L V +G
Sbjct: 204 RTCGEAGLAKTLVERFIKSKSFNYRPFKHSYNAILHSFLVLNQ--YKLIEWVYEQMLLDG 261
Query: 404 NVLTDAM-LNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSA--GKKD 460
+D + N V+ A +G++ + +L M+ GF + + + +S GK D
Sbjct: 262 GFSSDILTYNIVIYAKYRLGKVDQVLTLLGEMDRNGFSPDFHTYNILLHAISKGDIGKGD 321
Query: 461 -------------EANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEK 507
+A + +++M +G + + +LI G AG LD F +M +K
Sbjct: 322 LDKEDLGKEKEQFKALKLLNYMRETGIEPTVLHFTTLIDGFSRAGKLDACQYFFNEM-KK 380
Query: 508 EGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFK 567
G A +++ Y R ++ + + + +L P TY +I+ L + F
Sbjct: 381 NGCMPDVVAYTVMITGYVVA-RELEKAQEMFEEMLSKELVPNVFTYNSMIRGLCMAGKFD 439
Query: 568 DALSLLCLMKDHGFPPFVDPFIKYVS---KSGTSDDAIAFLKGMT 609
+A S+ M+ G P +I VS +G DA +K MT
Sbjct: 440 EACSMFKEMERKGCSPNSVVYITLVSCLRNAGRVADAREVIKQMT 484
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 87/383 (22%), Positives = 152/383 (39%), Gaps = 50/383 (13%)
Query: 127 VFTHEMVLKVLKNLESSPDE-----ARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQ 181
+ E++ +LKN+ S A +FF W ++E R ++ Y+L++ I +
Sbjct: 119 ILVREVLFGILKNINSENKTRCAKLAYKFFVWCGQQEDYRHTANAYHLIMNIYAECKEFK 178
Query: 182 EFWGLVDVMKKKGYGVASHVRNKMTEKFEKEGLESDL-EKL--KGIFATGSIDNSIEKVA 238
W LVD M KGY + N + + GL L E+ F +S +
Sbjct: 179 ALWRLVDEMIGKGYKATARTFNILIRTCGEAGLAKTLVERFIKSKSFNYRPFKHSYNAIL 238
Query: 239 SRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVV-----DKLGDEPKKALIFFRWAEE 293
+ + + E+ L L+ FS+D++ + + +LG + + L +
Sbjct: 239 HSFLVLNQYKLIEWVYEQML--LDGGFSSDILTYNIVIYAKYRLG-KVDQVLTLLGEMDR 295
Query: 294 SGFVKHDESSYNAMASV---------------LGREDCIDRFWKVLDEMRSKGYEMEMET 338
+GF D +YN + LG+E + K+L+ MR G E +
Sbjct: 296 NGF-SPDFHTYNILLHAISKGDIGKGDLDKEDLGKEKEQFKALKLLNYMRETGIEPTVLH 354
Query: 339 CVKVLGRFSERNMVKEAVDLYEFAMACKNK--PSVNCCTFLLRKIVVSKQLDMRLFSKVV 396
++ FS + Y F KN P V T ++ VV+++L+ K
Sbjct: 355 FTTLIDGFSRAGKLDACQ--YFFNEMKKNGCMPDVVAYTVMITGYVVARELE-----KAQ 407
Query: 397 RVFREN------GNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIA 450
+F E NV T NS+++ L G+ E + K ME G +S + +
Sbjct: 408 EMFEEMLSKELVPNVFT---YNSMIRGLCMAGKFDEACSMFKEMERKGCSPNSVVYITLV 464
Query: 451 FRLSSAGKKDEANEFMDHMEASG 473
L +AG+ +A E + M +G
Sbjct: 465 SCLRNAGRVADAREVIKQMTETG 487
>gi|116309556|emb|CAH66618.1| OSIGBa0144C23.4 [Oryza sativa Indica Group]
Length = 845
Score = 68.2 bits (165), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 77/382 (20%), Positives = 149/382 (39%), Gaps = 41/382 (10%)
Query: 297 VKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAV 356
+ D +Y+ + L + +D+ +VL++M G T ++ +S M E+V
Sbjct: 276 IAPDLFTYSLIIDGLCKSKAMDKAERVLEQMVEAGTRPNSITYNSLIHGYSISGMWNESV 335
Query: 357 DLYEFAMACKNKPSVNCCTFLLRK-----------------IVVSKQLDMRLFSK----- 394
+++ +C P+V+ C + ++ + D+ +S
Sbjct: 336 RVFKQMSSCGVIPTVDNCNSFIHALFKHGRTNEAKCIFDSMVLKGPKPDIISYSTNASWV 395
Query: 395 ------VVRVFREN--------GNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFI 440
VV V N G + N ++ A G M + I + M+ G I
Sbjct: 396 CYWYVTVVWVMWHNIFNLMLTKGIAPNKHVFNILINAYARCGMMDKAMLIFEDMQNKGMI 455
Query: 441 ASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADC 500
+ + + L G+ D+A +HM G + ++ LI+G C G+L KA +
Sbjct: 456 PDTVTFATVISSLCRIGRLDDALHKFNHMVDIGVPPSEAVYGCLIQGCCNHGELVKAKEL 515
Query: 501 FQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNL 560
+M+ K+ ++N C + R + K + + + + +P T+ L++
Sbjct: 516 ISEMMNKDIPPPGVKYFSSIINNLCKEGRVAEG-KDIMDMMVQTGQRPNVVTFNSLMEGY 574
Query: 561 LVQRGFKDALSLLCLMKDHGFPP---FVDPFIKYVSKSGTSDDAIAFLKGMTSKRFPSMS 617
+ ++A +LL M G P + K+G DDA+ + M K S
Sbjct: 575 CLVGNMEEAFALLDAMASIGIEPNCYIYGTLVDGYCKNGRIDDALTVFRDMLHKGVKPTS 634
Query: 618 VVL-CLFAAFFQARRHSEAQDL 638
V+ + FQARR + A+ +
Sbjct: 635 VLYSIILHGLFQARRTTAAKKM 656
Score = 43.5 bits (101), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 61/132 (46%), Gaps = 5/132 (3%)
Query: 483 SLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVR 542
S+IK C ++DKA QKMV+ G + + L+++ C K++A+D + V +
Sbjct: 250 SIIKELCKMKEMDKAESIVQKMVD-SGIAPDLFTYSLIIDGLC-KSKAMDKAERVLEQMV 307
Query: 543 EYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVD---PFIKYVSKSGTSD 599
E +P TY LI + + +++ + M G P VD FI + K G ++
Sbjct: 308 EAGTRPNSITYNSLIHGYSISGMWNESVRVFKQMSSCGVIPTVDNCNSFIHALFKHGRTN 367
Query: 600 DAIAFLKGMTSK 611
+A M K
Sbjct: 368 EAKCIFDSMVLK 379
>gi|225456631|ref|XP_002266698.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74750
[Vitis vinifera]
Length = 875
Score = 68.2 bits (165), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 68/293 (23%), Positives = 119/293 (40%), Gaps = 13/293 (4%)
Query: 220 KLKGIFATGSIDNSIEKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGD 279
K+ GI S V + +++R WG E LR+LN V+ ++ D
Sbjct: 299 KMIGIAPVSRQFGSSGHVVENVSRILRQLSWGPAAEEALRNLNCLMDAYQANQVLKQIQD 358
Query: 280 EPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETC 339
P AL FF W + KHD +Y M +LGR K+L EM G + + T
Sbjct: 359 HPV-ALGFFYWLKRQTGFKHDGHTYTTMVGILGRARQFGAINKLLAEMVRDGCQPNVVTY 417
Query: 340 VKVLGRFSERNMVKEAVDLYEFAMACKNKPS-VNCCTFL-LRKIVVSKQLDMRLFSKVVR 397
+++ + N + EAV +++ +P V CT + + + + ++ K+
Sbjct: 418 NRLIHSYGRANYLNEAVSVFDRMQEAGCQPDRVTYCTLIDIHAKAGFLDVALHMYQKMQE 477
Query: 398 VFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAG 457
++N + KA G + +K+ M + G + + + + + A
Sbjct: 478 AHLSPDTFTYSVIINCLGKA----GHLTSAHKLFCEMVDQGCVPNLVTYNIMIALQAKAR 533
Query: 458 KKDEANEFMDHMEASGSDVGDKMWVSLIK---GHCVAGDLDKAADCFQKMVEK 507
A E M+ +G DK+ S++ GHC G L++A F +M K
Sbjct: 534 NYPTALELYRDMQNAGFQP-DKVTYSIVMEVLGHC--GHLEEAEAIFTEMKRK 583
>gi|255540881|ref|XP_002511505.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223550620|gb|EEF52107.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 876
Score = 67.8 bits (164), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 97/431 (22%), Positives = 164/431 (38%), Gaps = 31/431 (7%)
Query: 237 VASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGF 296
+ + ++R WG E L +LN + V+ +L D AL FF W +
Sbjct: 317 IVENVAHILRQIRWGPAAEEALANLNYSMDPYQANQVLKQLQDH-TVALNFFYWLKRQPG 375
Query: 297 VKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAV 356
HD +Y M +LGR K+LD+M G + + T +++ + N + +AV
Sbjct: 376 FNHDGHTYTTMVGILGRAKQFGAINKLLDQMVKDGCQPNVVTYNRLIHSYGRANYLNDAV 435
Query: 357 DLYEFAMACKNKPS-VNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSV- 414
D++ +P V CT I + + F+ + + + D SV
Sbjct: 436 DVFNEMQRVGCEPDRVTYCTL----IDIHAKAGFLDFALEMYQRMQAAGLSPDTFTYSVI 491
Query: 415 LKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGS 474
+ L G + +K+ M E G + + + + + A A + M+++G
Sbjct: 492 INCLGKAGHLAAAHKLFCEMVEQGCVPNLVTYNIMIALQAKARNYQSALKLYRDMQSAGF 551
Query: 475 DVGDKMWVSLIK---GHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAI 531
DK+ S++ GHC G LD+A F +M K LLV+ +
Sbjct: 552 Q-PDKVTYSIVMEVLGHC--GYLDEAEAVFSEMKRKNWVPDEP-VYGLLVDLWGKAGNVE 607
Query: 532 DACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPFIKY 591
A ++ + + L+P T L+ L DA +LL M + G P + +
Sbjct: 608 KAWQW-YQTMLNTGLRPNVPTCNSLLSAFLRVHKLADAYNLLQSMLELGLNPSLQTY--- 663
Query: 592 VSKSGTSDDAIAFLKGMTSKRFPSMSVVLCLFAAFFQARRHSEAQDLLSKCP--RYVRNH 649
L T R P + C A H L S P + VR+H
Sbjct: 664 ----------TLLLSCCTEARSPYDMGIYCELMAVTGHPAHMFLLSLPSAGPDGQNVRDH 713
Query: 650 AD-VLNLLYSK 659
A L+L++S+
Sbjct: 714 ASKFLDLMHSE 724
>gi|414586649|tpg|DAA37220.1| TPA: hypothetical protein ZEAMMB73_348855 [Zea mays]
gi|414586650|tpg|DAA37221.1| TPA: hypothetical protein ZEAMMB73_348855 [Zea mays]
Length = 969
Score = 67.8 bits (164), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 102/416 (24%), Positives = 172/416 (41%), Gaps = 57/416 (13%)
Query: 283 KALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKV 342
KA + GFV D S+Y+ + + L +++ + + EM+S G ++ T +
Sbjct: 438 KAFQIIKLMMRKGFVP-DTSTYSKVITFLCEAMKVEKAFLLFQEMKSVGVIPDVYTYTIL 496
Query: 343 LGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMR--LFSKVVRVFR 400
+ F + ++++A ++ + PSV T LL + +KQ+ +F ++V
Sbjct: 497 IDSFCKVGLIEQARSWFDEMESVGCSPSVVTYTALLHAYLKTKQVPQASDIFHRMVDAGC 556
Query: 401 ENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASS-NMKSKIAFR------- 452
+ A+++ + KA GE K + + I +S N+ S F
Sbjct: 557 APNTITYSALVDGLCKA-------GESQKACEVYAK--MIGTSDNVGSDFYFEGEHTDSI 607
Query: 453 -------------LSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAAD 499
L A K +A E +D M ++G + ++ +LI G C G LD A +
Sbjct: 608 APNVVTYGALIDGLCKAHKVVDAQELLDVMSSNGCEPNHIIYDALIDGFCKVGKLDNAQE 667
Query: 500 CFQKMVEKEGTSHAGYAIDLLVNTYCS------KNRAIDACKFVHNCVREYDLKPWHTTY 553
F +M S GY V+TY S K+R +D V + + E P TY
Sbjct: 668 VFFRM------SKCGYLPT--VHTYTSLIDAMFKDRRLDLAIKVLSQMLESSCTPNVVTY 719
Query: 554 EELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPF---IKYVSKSGTSDDAIA-FLKGMT 609
+I L + AL LL +M+ G P V + I + KSG D ++ F + +T
Sbjct: 720 TAMIDGLCRIGECQKALKLLSMMEKRGCNPNVVTYTSLIDGLGKSGKVDMSLQLFTQMIT 779
Query: 610 SKRFPSMSVVLCLFAAFFQARRHSEAQDLLSKC-----PRYVRNHADVLNLLYSKK 660
P+ L A EA LLS+ P+YV+ + V+ +SKK
Sbjct: 780 QGCAPNYVTYRVLINHCCAAGLLDEAHSLLSEMKQTYWPKYVQGYCSVVQ-GFSKK 834
Score = 47.4 bits (111), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 64/307 (20%), Positives = 105/307 (34%), Gaps = 55/307 (17%)
Query: 389 MRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSK 448
+ L KV + VL + + L +G+ + +I+K M GF+ ++ SK
Sbjct: 401 LALAEKVYEEMLASSCVLNKVNTANFARCLCGMGKFDKAFQIIKLMMRKGFVPDTSTYSK 460
Query: 449 IAFRLSSA-----------------------------------GKKDEANEFMDHMEASG 473
+ L A G ++A + D ME+ G
Sbjct: 461 VITFLCEAMKVEKAFLLFQEMKSVGVIPDVYTYTILIDSFCKVGLIEQARSWFDEMESVG 520
Query: 474 SDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDA 533
+ +L+ + + +A+D F +MV+ G + LV+ C + A
Sbjct: 521 CSPSVVTYTALLHAYLKTKQVPQASDIFHRMVDA-GCAPNTITYSALVDGLCKAGESQKA 579
Query: 534 CKFVHNCVREYD---------------LKPWHTTYEELIKNLLVQRGFKDALSLLCLMKD 578
C+ + D + P TY LI L DA LL +M
Sbjct: 580 CEVYAKMIGTSDNVGSDFYFEGEHTDSIAPNVVTYGALIDGLCKAHKVVDAQELLDVMSS 639
Query: 579 HGFPP---FVDPFIKYVSKSGTSDDAI-AFLKGMTSKRFPSMSVVLCLFAAFFQARRHSE 634
+G P D I K G D+A F + P++ L A F+ RR
Sbjct: 640 NGCEPNHIIYDALIDGFCKVGKLDNAQEVFFRMSKCGYLPTVHTYTSLIDAMFKDRRLDL 699
Query: 635 AQDLLSK 641
A +LS+
Sbjct: 700 AIKVLSQ 706
>gi|255660898|gb|ACU25618.1| pentatricopeptide repeat-containing protein [Glandularia dissecta]
Length = 484
Score = 67.8 bits (164), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 79/364 (21%), Positives = 149/364 (40%), Gaps = 48/364 (13%)
Query: 258 LRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCI 317
+R+L +F ++LV V+ + AL FFRW E S +H+ ++ + +LGR +
Sbjct: 3 IRNLVPSFDHELVYNVLHS-SKTSEHALQFFRWVERSNLFEHNRETHLKIIEILGRASKL 61
Query: 318 DRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFL 377
+ +L +M KG E + + V ++ + + +V+E+V
Sbjct: 62 NHARCILLDMPKKGLEWDEDMWVMMIDSYGKZGIVQESV--------------------- 100
Query: 378 LRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEG 437
++F K+ E G T N++ K ++ GR + M
Sbjct: 101 ------------KMFQKM----EELGVERTIKSYNALFKVILRRGRYMMAKRYFNKMLSE 144
Query: 438 GFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKA 497
G + + + + + +GK + AN F + M++ + ++I G+ +++A
Sbjct: 145 GIEPTRHTFNVMIWGFFLSGKVETANRFFEDMKSREISPDVVTYNTMINGYYRVKKMEEA 204
Query: 498 ADCFQKMVEKEGTSHAGYAIDL--LVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEE 555
F VE +G + + L+ Y S ++ DA + V ++ + +KP TY
Sbjct: 205 EKYF---VEMKGRNIEPTVVTYTTLIKGYVSVDQVDDALRLVEE-MKGFGIKPNAITYST 260
Query: 556 LIKNLLVQRGFKDALSLLCLMKDHGFPPFVDP-FIKYVS---KSGTSDDAIAFLKGMTSK 611
L+ L +A +L M D P + F++ +S KSG D A LK M
Sbjct: 261 LLPGLCNAEKMSEARVILKEMMDKYLAPTDNSIFMRLISSHCKSGNLDAAADVLKAMXRL 320
Query: 612 RFPS 615
P+
Sbjct: 321 SVPT 324
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 105/498 (21%), Positives = 196/498 (39%), Gaps = 81/498 (16%)
Query: 128 FTHEMVLKVLKNLESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLV 187
F HE+V VL + ++S + A +FF WV + +T+ ++ I+G + ++
Sbjct: 10 FDHELVYNVLHSSKTS-EHALQFFRWVERSNLFEHNRETHLKIIEILGRASKLNHARCIL 68
Query: 188 DVMKKKGYGVASHVRNKMTEKFEKEGLESDLEKLKGIFATGSIDNSIEKVASRICKVVRS 247
M KKG + M + + KZG+ + K+ +E++
Sbjct: 69 LDMPKKGLEWDEDMWVMMIDSYGKZGIVQESVKMF---------QKMEELG--------- 110
Query: 248 DIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAM 307
VER ++ N F V+ + G F + E ++ ++N M
Sbjct: 111 ------VERTIKSYNALFK------VILRRGRYMMAKRYFNKMLSEG--IEPTRHTFNVM 156
Query: 308 A---SVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMA 364
+ G+ + +RF+ ++M+S+ ++ T ++ + ++EA + Y M
Sbjct: 157 IWGFFLSGKVETANRFF---EDMKSREISPDVVTYNTMINGYYRVKKMEEA-EKYFVEMK 212
Query: 365 CKN-KPSVNCCTFLLRKIVVSKQLD--MRLFSKVVRVFRENGNVLTDAMLNSVLKALISV 421
+N +P+V T L++ V Q+D +RL ++ + F N +T +++L L +
Sbjct: 213 GRNIEPTVVTYTTLIKGYVSVDQVDDALRLVEEM-KGFGIKPNAIT---YSTLLPGLCNA 268
Query: 422 GRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSA----GKKDEANEFMDHMEASGSDVG 477
+M E ILK M + + N I RL S+ G D A + + M
Sbjct: 269 EKMSEARVILKEMMDKYLAPTDN---SIFMRLISSHCKSGNLDAAADVLKAMXRLSVPTE 325
Query: 478 DKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFV 537
+ LI+ C G DKA K++EK+ + L + Y
Sbjct: 326 AGHYGVLIENFCKXGQYDKAVKLLDKLIEKDIILRPQSTLHLEPSAY------------- 372
Query: 538 HNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPFIKYVSKSGT 597
N + EY E + L++ G +D +L L++ H S+ G+
Sbjct: 373 -NPMIEYLCNNGQAAKAETLVRQLLKLGVQDPTALNTLIRGH-------------SQEGS 418
Query: 598 SDDAIAFLKGMTSKRFPS 615
D A LK M ++ S
Sbjct: 419 PDSAFELLKIMLRRKVDS 436
>gi|297839365|ref|XP_002887564.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297333405|gb|EFH63823.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 451
Score = 67.8 bits (164), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 85/381 (22%), Positives = 160/381 (41%), Gaps = 23/381 (6%)
Query: 265 FSNDLVKFVVDKLGDEPKKALIFFRWAEESG--FVKHDESSYNAMASVLGREDCIDRFWK 322
++ +LV V+ +L + KAL FF + + +V HD SS++ + R W
Sbjct: 52 WTPNLVNSVLKRLWNHGPKALQFFHFLDNHHREYV-HDASSFDLAIDIAARLHIHPTVWS 110
Query: 323 VLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLY--EFAMAC-KNKPSVNCCTFLLR 379
++ MRS +T V R++ +AV L+ C ++ S N +L
Sbjct: 111 LIHRMRSLRIGPSPKTFAIVAERYASSGKPDKAVKLFLNMHEHGCFQDLASFNT---ILD 167
Query: 380 KIVVSKQLDMRLFSKVVRVFRE-NGNVLTDAM-LNSVLKALISVGRMGECNKILKAMEEG 437
+ SK+++ K +FR G D + N ++ + R + ++LK M +
Sbjct: 168 VLCKSKRVE-----KAYELFRALRGRFSADTVTYNVIVNGWCLIKRTPKALEVLKEMVDR 222
Query: 438 GFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKA 497
G + + + AG+ +A EF M+ ++ + +++ G VAG++ +
Sbjct: 223 GINPNLTTYNTMLQGFFRAGQIRQAWEFFLEMKKRNCEIDVVTYTTVVHGFGVAGEIKRT 282
Query: 498 ADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELI 557
+ F +M+ +EG + + + C K+ +A VR+ +P TTY LI
Sbjct: 283 RNVFDEMI-REGVLPSVATYNAFIQVLCKKDSVENAVVMFEEMVRK-GYEPNVTTYNVLI 340
Query: 558 KNLLVQRGFKDALSLLCLMKDHGFPPFVDPF---IKYVSKSGTSDDAIAFLKGM-TSKRF 613
+ L F L+ M++ G P + I+Y S+ + A+ + M T
Sbjct: 341 RGLFHAGKFSRGEELMQRMENEGCEPNFQTYNMMIRYYSECSEVEKALGLFEKMGTGDCL 400
Query: 614 PSMSVVLCLFAAFFQARRHSE 634
P++ L + F R+ SE
Sbjct: 401 PNLDTYNILISGMF-VRKRSE 420
Score = 42.7 bits (99), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 69/324 (21%), Positives = 132/324 (40%), Gaps = 25/324 (7%)
Query: 128 FTHEMVLKVLKNLESSPDEARRFFNWVLEKESERL-SSKTYNLMLRIVGVHGLVQEFWGL 186
+T +V VLK L + +A +FF+++ E + + +++L + I + W L
Sbjct: 52 WTPNLVNSVLKRLWNHGPKALQFFHFLDNHHREYVHDASSFDLAIDIAARLHIHPTVWSL 111
Query: 187 VDVMKKKGYGVASHVRNKMTEKFEKEGLESDLEKL------KGIFATGSIDNSIEKVASR 240
+ M+ G + + E++ G KL G F + N+I V
Sbjct: 112 IHRMRSLRIGPSPKTFAIVAERYASSGKPDKAVKLFLNMHEHGCFQDLASFNTILDV--- 168
Query: 241 ICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLG----DEPKKALIFFRWAEESGF 296
+CK R + R L FS D V + V G KAL + + G
Sbjct: 169 LCKSKRV----EKAYELFRALRGRFSADTVTYNVIVNGWCLIKRTPKALEVLKEMVDRG- 223
Query: 297 VKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAV 356
+ + ++YN M R I + W+ EM+ + E+++ T V+ F +K
Sbjct: 224 INPNLTTYNTMLQGFFRAGQIRQAWEFFLEMKKRNCEIDVVTYTTVVHGFGVAGEIKRTR 283
Query: 357 DLYEFAMACKNKPSVNCCTFLLRKIVVSKQLD--MRLFSKVVRVFRENGNVLTDAMLNSV 414
++++ + PSV ++ + ++ + +F ++VR E NV T N +
Sbjct: 284 NVFDEMIREGVLPSVATYNAFIQVLCKKDSVENAVVMFEEMVRKGYE-PNVTT---YNVL 339
Query: 415 LKALISVGRMGECNKILKAMEEGG 438
++ L G+ ++++ ME G
Sbjct: 340 IRGLFHAGKFSRGEELMQRMENEG 363
>gi|357159149|ref|XP_003578355.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g18900-like [Brachypodium distachyon]
Length = 857
Score = 67.8 bits (164), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 90/397 (22%), Positives = 156/397 (39%), Gaps = 35/397 (8%)
Query: 206 TEKFEKEGLESDLEKLKGIFATGSIDNSIEKVASRICKVVRSDIWGDDVERQLRDLNVTF 265
T K G +S+L LK + A ++++++ WG E L L+
Sbjct: 281 TIKAHGGGPQSNLRSLKSLRAVEQYYHTLQQMK-----------WGPMTEHVLDSLHCKI 329
Query: 266 ----SNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFW 321
+N ++K + D AL FF W + KHD +Y M +LG+
Sbjct: 330 DAFQANQVLKLLHDH-----TMALGFFHWLKRQPGFKHDGHTYTTMIGILGQARQFGIMR 384
Query: 322 KVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPS-VNCCTFL-LR 379
+L EM + + T +++ + N ++EAV ++E +P V CT + +
Sbjct: 385 NLLHEMNRDRCKPTVVTYNRIIHAYGRANYLREAVKVFEEMEEAGYEPDRVTYCTLIDIH 444
Query: 380 KIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGF 439
++ M L+ ++ V AM+N + K G++ K+ M E G
Sbjct: 445 AKAGYLEVAMDLYGRMQEVGLSPDTFTYSAMVNCLGKG----GQLAAAYKLFCEMIENGC 500
Query: 440 IASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIK---GHCVAGDLDK 496
+ + I + A D + M+ +G DK+ S++ GHC G LD+
Sbjct: 501 TPNLVTYNIIIALQAKARNYDNVVKLYRDMQVAGFRP-DKITYSIVMEVLGHC--GHLDE 557
Query: 497 AADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEEL 556
A F +M Y LLV+ + A + H +++ L+P T L
Sbjct: 558 AEAVFIEMRRDWAPDEPVYG--LLVDLWGKAGNVDKALGWYHAMLQD-GLQPNVPTCNSL 614
Query: 557 IKNLLVQRGFKDALSLLCLMKDHGFPPFVDPFIKYVS 593
+ L F+DA S+L M G P + + +S
Sbjct: 615 LSAFLKINRFQDAYSVLQNMLAQGLVPSLQTYTLLLS 651
>gi|255660912|gb|ACU25625.1| pentatricopeptide repeat-containing protein [Mulguraea aspera]
Length = 481
Score = 67.8 bits (164), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 84/392 (21%), Positives = 160/392 (40%), Gaps = 49/392 (12%)
Query: 258 LRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCI 317
+R+L +F ++LV V+ + AL FFRW E S +H+ ++ + +LGR +
Sbjct: 3 IRNLVPSFDHELVYNVLHS-AKTSEHALQFFRWVERSNLFEHNRETHLKIIEILGRASKL 61
Query: 318 DRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFL 377
+ +L +M KG E + + V ++ + ++ +V+E+V L++
Sbjct: 62 NHARCILLDMPKKGLEWDEDMWVMMIDSYGKQGIVQESVKLFD----------------- 104
Query: 378 LRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEG 437
E G T +++ K ++ GR + M
Sbjct: 105 --------------------RMEELGVERTIKSYDALFKVILRRGRYMMAKRYFNKMLSE 144
Query: 438 GFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKA 497
G + + + + + +GK + AN F + M++ + ++I G+ + +A
Sbjct: 145 GIEPTRHTFNVLIWGFFLSGKVETANRFFEDMKSREISPDVVTYNTMINGYYRVKKMXEA 204
Query: 498 ADCFQKMVEKEGTSHAGYAI--DLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEE 555
F VE +G + + L+ Y S ++ DA + V ++ + +KP TY
Sbjct: 205 EKYF---VEMKGRNIEPTVVTYTTLIKGYVSVDQVDDALRLVEE-MKGFGIKPNAITYST 260
Query: 556 LIKNLLVQRGFKDALSLLCLMKDHGFPPFVDP-FIKYVS---KSGTSDDAIAFLKGMTSK 611
L+ L +A S+L M D P + F++ ++ KSG D A LK M
Sbjct: 261 LLPGLCNAEKMSEARSILKEMMDKYLAPTDNSIFMRLITSQCKSGHLDAASDVLKAMIRL 320
Query: 612 RFPSMSVVL-CLFAAFFQARRHSEAQDLLSKC 642
P+ + L F +A ++ +A LL K
Sbjct: 321 SVPTEAGHYGVLIENFCKAGQYDQAVKLLDKV 352
Score = 47.4 bits (111), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 103/498 (20%), Positives = 198/498 (39%), Gaps = 81/498 (16%)
Query: 128 FTHEMVLKVLKNLESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLV 187
F HE+V VL + ++S + A +FF WV + +T+ ++ I+G + ++
Sbjct: 10 FDHELVYNVLHSAKTS-EHALQFFRWVERSNLFEHNRETHLKIIEILGRASKLNHARCIL 68
Query: 188 DVMKKKGYGVASHVRNKMTEKFEKEGLESDLEKLKGIFATGSIDNSIEKVASRICKVVRS 247
M KKG + M + + K+G+ + KL + +E++
Sbjct: 69 LDMPKKGLEWDEDMWVMMIDSYGKQGIVQESVKLF---------DRMEELG--------- 110
Query: 248 DIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAM 307
VER ++ + F V+ + G F + E ++ ++N +
Sbjct: 111 ------VERTIKSYDALFK------VILRRGRYMMAKRYFNKMLSEG--IEPTRHTFNVL 156
Query: 308 A---SVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMA 364
+ G+ + +RF+ ++M+S+ ++ T ++ + + EA + Y M
Sbjct: 157 IWGFFLSGKVETANRFF---EDMKSREISPDVVTYNTMINGYYRVKKMXEA-EKYFVEMK 212
Query: 365 CKN-KPSVNCCTFLLRKIVVSKQLD--MRLFSKVVRVFRENGNVLTDAMLNSVLKALISV 421
+N +P+V T L++ V Q+D +RL ++ + F N +T +++L L +
Sbjct: 213 GRNIEPTVVTYTTLIKGYVSVDQVDDALRLVEEM-KGFGIKPNAIT---YSTLLPGLCNA 268
Query: 422 GRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSA----GKKDEANEFMDHMEASGSDVG 477
+M E ILK M + + N I RL ++ G D A++ + M
Sbjct: 269 EKMSEARSILKEMMDKYLAPTDN---SIFMRLITSQCKSGHLDAASDVLKAMIRLSVPTE 325
Query: 478 DKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFV 537
+ LI+ C AG D+A K++EK+ + L + Y
Sbjct: 326 AGHYGVLIENFCKAGQYDQAVKLLDKVIEKDIILRPQSTLHLEPSAY------------- 372
Query: 538 HNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPFIKYVSKSGT 597
N + EY E + L++ G +D +L L++ H S+ G+
Sbjct: 373 -NPMIEYLCNNGQAAKAETLVRQLLKLGVQDPTALNTLIRGH-------------SQEGS 418
Query: 598 SDDAIAFLKGMTSKRFPS 615
D A LK M ++ S
Sbjct: 419 PDSAFELLKIMLRRKVDS 436
>gi|255660882|gb|ACU25610.1| pentatricopeptide repeat-containing protein [Verbena montevidensis]
Length = 484
Score = 67.8 bits (164), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 79/364 (21%), Positives = 149/364 (40%), Gaps = 48/364 (13%)
Query: 258 LRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCI 317
+R+L +F ++LV V+ + AL FFRW E S +H+ ++ + +LGR +
Sbjct: 3 IRNLVPSFDHELVYNVLHS-SKTSEHALQFFRWVERSNLFEHNRETHLKIIEILGRASKL 61
Query: 318 DRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFL 377
+ +L +M KG E + + V ++ + + +V+E+V
Sbjct: 62 NHARCILLDMPKKGLEWDEDMWVMMIDSYGKEGIVQESV--------------------- 100
Query: 378 LRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEG 437
++F K+ E G T N++ K ++ GR + M
Sbjct: 101 ------------KMFQKM----EELGVERTIKSYNALFKVILRRGRYMMAKRYFNKMLSE 144
Query: 438 GFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKA 497
G + + + + + +GK + AN F + M++ + ++I G+ +++A
Sbjct: 145 GIEPTRHTFNVMIWGFFLSGKVETANRFFEDMKSREISPDVVTYNTMINGYYRVKKMEEA 204
Query: 498 ADCFQKMVEKEGTSHAGYAIDL--LVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEE 555
F VE +G + + L+ Y S ++ DA + V ++ + +KP TY
Sbjct: 205 EKYF---VEMKGRNIEPTVVTYTTLIKGYVSVDQVDDALRLVEE-MKGFGIKPNAITYST 260
Query: 556 LIKNLLVQRGFKDALSLLCLMKDHGFPPFVDP-FIKYVS---KSGTSDDAIAFLKGMTSK 611
L+ L +A +L M D P + F++ +S KSG D A LK M
Sbjct: 261 LLPGLCNAEKMSEARVILKEMMDKYLAPTDNSIFMRLISSHCKSGNLDAAADVLKAMIRL 320
Query: 612 RFPS 615
P+
Sbjct: 321 SVPT 324
Score = 57.4 bits (137), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 79/366 (21%), Positives = 159/366 (43%), Gaps = 22/366 (6%)
Query: 265 FSNDLVKFVVDKLGDEP--KKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWK 322
+ D+ ++D G E ++++ F+ EE G V+ SYNA+ V+ R +
Sbjct: 78 WDEDMWVMMIDSYGKEGIVQESVKMFQKMEELG-VERTIKSYNALFKVILRRGRYMMAKR 136
Query: 323 VLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIV 382
++M S+G E T ++ F V+ A +E + + P V ++
Sbjct: 137 YFNKMLSEGIEPTRHTFNVMIWGFFLSGKVETANRFFEDMKSREISPDVVTYNTMINGYY 196
Query: 383 VSKQLDMRLFSKVVRVFRE-NGNVL--TDAMLNSVLKALISVGRMGECNKILKAMEEGGF 439
K+++ + + F E G + T +++K +SV ++ + ++++ M+ G
Sbjct: 197 RVKKME-----EAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDALRLVEEMKGFGI 251
Query: 440 IASSNMKSKIAFRLSSAGKKDEANEFM-DHMEASGSDVGDKMWVSLIKGHCVAGDLDKAA 498
++ S + L +A K EA + + M+ + + +++ LI HC +G+LD AA
Sbjct: 252 KPNAITYSTLLPGLCNAEKMSEARVILKEMMDKYLAPTDNSIFMRLISSHCKSGNLDAAA 311
Query: 499 DCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCV-REYDLKPWHT------ 551
D + M+ + AG+ L+ +C + A K + + ++ L+P T
Sbjct: 312 DVLKAMIRLSVPTEAGH-YGXLIENFCKVGQYDKAVKLLDKLIEKDIILRPQSTLHLEPS 370
Query: 552 TYEELIKNLLVQRGFKDALSLLCLMKDHGF--PPFVDPFIKYVSKSGTSDDAIAFLKGMT 609
Y +I+ L A +L+ + G P ++ I+ S+ G+ D A LK M
Sbjct: 371 AYNPMIEYLCNNGQAXKAETLVRQLXKLGVQDPTALNTLIRGHSQEGSPDSAFELLKIML 430
Query: 610 SKRFPS 615
++ S
Sbjct: 431 RRKVDS 436
>gi|10177952|dbj|BAB11311.1| unnamed protein product [Arabidopsis thaliana]
Length = 680
Score = 67.8 bits (164), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 77/358 (21%), Positives = 140/358 (39%), Gaps = 47/358 (13%)
Query: 254 VERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGR 313
+++ L L + S D+V V+++ + + FF WA V D SY+ + LGR
Sbjct: 104 IQKSLSSLGIGLSIDIVADVLNRGNLSGEAMVTFFDWAVREPGVTKDVGSYSVILRALGR 163
Query: 314 EDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNC 373
VL M +G ++E + F + V+ A++L+E + + K S
Sbjct: 164 RKLFSFMMDVLKGMVCEGVNPDLECLTIAMDSFVRVHYVRRAIELFEESESFGVKCSTES 223
Query: 374 CTFLLRKIVVSKQLDMRLFSKVVRVFR-ENGNVLTDAM-LNSVLKALISVGRMGECNKIL 431
LLR + + S VF + GN+ D+ N ++ +G + E K+L
Sbjct: 224 FNALLRCLCERSHV-----SAAKSVFNAKKGNIPFDSCSYNIMISGWSKLGEVEEMEKVL 278
Query: 432 KAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVA 491
K M E GF S + L G+ +++ E D+++ G+ ++ ++I A
Sbjct: 279 KEMVESGFGPDCLSYSHLIEGLGRTGRINDSVEIFDNIKHKGNVPDANVYNAMICNFISA 338
Query: 492 GDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHT 551
D D++ +++M+++E +P
Sbjct: 339 RDFDESMRYYRRMLDEE-------------------------------------CEPNLE 361
Query: 552 TYEELIKNLLVQRGFKDALSLLCLMKDHGFPP---FVDPFIKYVSKSGTSDDAIAFLK 606
TY +L+ L+ R DAL + M G P V F+K + G A+ +
Sbjct: 362 TYSKLVSGLIKGRKVSDALEIFEEMLSRGVLPTTGLVTSFLKPLCSYGPPHAAMVIYQ 419
Score = 45.1 bits (105), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 88/424 (20%), Positives = 165/424 (38%), Gaps = 66/424 (15%)
Query: 117 ISKQLELSGVVFTHEMVLKVLKNLESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVGV 176
I K L G+ + ++V VL S + FF+W + + +Y+++LR +G
Sbjct: 104 IQKSLSSLGIGLSIDIVADVLNRGNLSGEAMVTFFDWAVREPGVTKDVGSYSVILRALGR 163
Query: 177 HGLVQEFWGLVDVMKKKGYGVASHVRNKMTEKFEKEGLESDLEKLKGIFATGSIDNSIEK 236
L F ++DV+K G+ EG+ DLE L T ++D+ +
Sbjct: 164 RKL---FSFMMDVLK----GMVC------------EGVNPDLECL-----TIAMDSFV-- 197
Query: 237 VASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGF 296
R+ V R+ ++ E + N L++ + ++ K++ + + G
Sbjct: 198 ---RVHYVRRAIELFEESESFGVKCSTESFNALLRCLCERSHVSAAKSV----FNAKKGN 250
Query: 297 VKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAV 356
+ D SYN M S + ++ KVL EM G+ + + ++ + ++V
Sbjct: 251 IPFDSCSYNIMISGWSKLGEVEEMEKVLKEMVESGFGPDCLSYSHLIEGLGRTGRINDSV 310
Query: 357 DLYEFAMACKNKPSVNC-----CTFL-----------LRKIV--------------VSKQ 386
++++ N P N C F+ R+++ VS
Sbjct: 311 EIFDNIKHKGNVPDANVYNAMICNFISARDFDESMRYYRRMLDEECEPNLETYSKLVSGL 370
Query: 387 LDMRLFSKVVRVFRE---NGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASS 443
+ R S + +F E G + T ++ S LK L S G I + + G S
Sbjct: 371 IKGRKVSDALEIFEEMLSRGVLPTTGLVTSFLKPLCSYGPPHAAMVIYQKSRKAGCRISE 430
Query: 444 NMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQK 503
+ + RLS GK D M+ SG +++ ++ G C+ G L+ A ++
Sbjct: 431 SAYKLLLKRLSRFGKCGMLLNVWDEMQESGYPSDVEVYEYIVDGLCIIGHLENAVLVMEE 490
Query: 504 MVEK 507
+ K
Sbjct: 491 AMRK 494
>gi|242087579|ref|XP_002439622.1| hypothetical protein SORBIDRAFT_09g017100 [Sorghum bicolor]
gi|241944907|gb|EES18052.1| hypothetical protein SORBIDRAFT_09g017100 [Sorghum bicolor]
Length = 657
Score = 67.8 bits (164), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 82/365 (22%), Positives = 142/365 (38%), Gaps = 19/365 (5%)
Query: 232 NSIEKVASRICKVVRSDIWGD---DVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFF 288
S +V R+C + + ++E L L+ +V V+ + + + FF
Sbjct: 158 TSNPEVVGRVCAAIADVVAAGADANLEAALSALSPPLCEAVVLAVLHRFKHAHRPSYRFF 217
Query: 289 RWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSE 348
RWA SG H +Y M +LG+ + ++ EM G + M+ + F+
Sbjct: 218 RWATASGGFTHTTITYCKMLHILGKTRQFEMMVAIIQEMGKVG-ALSMDAFKVAIKSFAA 276
Query: 349 RNMVKEAVDLYEFAMACKNK-----PSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENG 403
+K AV ++E KN S NC L + ++ ++F K+ + +
Sbjct: 277 AGEIKNAVGVFELMK--KNGFDDGVESFNCLLVALANEGLGREAR-QVFDKMHGQYSPDL 333
Query: 404 NVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEAN 463
T ML A + + E ++ M E G + + + L ++ EA
Sbjct: 334 RSYTALML-----AWCNARNLVEAGRVWNEMLEKGMKPDVVVHNTMIEGLLRGQRRPEAL 388
Query: 464 EFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNT 523
+ + M+A G + LI+ HC G +D A +CF++M E LLV
Sbjct: 389 KMFELMKAKGPPPNVWTYTMLIRDHCKRGKMDMAMECFEEMQEARCQPDVATYTCLLVG- 447
Query: 524 YCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPP 583
Y + R +D V + + P TY LIK L ++ DA + M G P
Sbjct: 448 YGNAKR-MDRVTAVLEEMTQKGCPPDARTYNALIKLLTNRKMPDDAARIYKKMIKKGLEP 506
Query: 584 FVDPF 588
+ +
Sbjct: 507 TIHTY 511
Score = 42.7 bits (99), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 82/424 (19%), Positives = 164/424 (38%), Gaps = 50/424 (11%)
Query: 132 MVLKVLKNLESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLVDVMK 191
+VL VL + + + RFF W ++ TY ML I+G ++F +V +++
Sbjct: 198 VVLAVLHRFKHAHRPSYRFFRWATASGGFTHTTITYCKMLHILGK---TRQFEMMVAIIQ 254
Query: 192 KKGYGVASHVRNKMTEKFEKEGLESDLEKLKGIFATGSIDNSIEKVASRICKVVRSDIWG 251
+ G K +++ +K A G I N++ + ++++ + +
Sbjct: 255 EMG-------------KVGALSMDAFKVAIKSFAAAGEIKNAVG-----VFELMKKNGFD 296
Query: 252 DDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVL 311
D VE +F+ LV + LG E ++ + + G D SY A+
Sbjct: 297 DGVE--------SFNCLLVALANEGLGREARQV-----FDKMHGQYSPDLRSYTALMLAW 343
Query: 312 GREDCIDRFWKVLDEMRSKGYEMEM---ETCVKVLGRFSERNMVKEAVDLYEFAMACKNK 368
+ +V +EM KG + ++ T ++ L R R EA+ ++E A
Sbjct: 344 CNARNLVEAGRVWNEMLEKGMKPDVVVHNTMIEGLLRGQRR---PEALKMFELMKAKGPP 400
Query: 369 PSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVG---RMG 425
P+V T L+R ++DM + F E + + L+ G RM
Sbjct: 401 PNVWTYTMLIRDHCKRGKMDM-----AMECFEEMQEARCQPDVATYTCLLVGYGNAKRMD 455
Query: 426 ECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLI 485
+L+ M + G + + + L++ D+A M G + + ++
Sbjct: 456 RVTAVLEEMTQKGCPPDARTYNALIKLLTNRKMPDDAARIYKKMIKKGLEPTIHTYNMMM 515
Query: 486 KGHCVAGDLDKAADC-FQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREY 544
K + + GD + A C + + + G + + +N + R +A K++ + +
Sbjct: 516 KSYFL-GDRNYAMGCAVWEEMHRRGICPDVNSYTVFINGHIRHGRPEEAYKYIEEMINKG 574
Query: 545 DLKP 548
P
Sbjct: 575 MTAP 578
>gi|356512664|ref|XP_003525037.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g74750-like [Glycine max]
Length = 873
Score = 67.8 bits (164), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 96/440 (21%), Positives = 176/440 (40%), Gaps = 24/440 (5%)
Query: 198 ASHVRNKMTEKFE-----KEGLESDLEKLKGIFATGSIDNSIEKVASRICKVVRSDIWGD 252
S++R T+ E KE LK T ++ I +V S I + +R WG
Sbjct: 273 GSYMRASNTQMVEVVPTIKESFNKHPRDLKMSARTAPMNRRIVEVVSDILRQLR---WGP 329
Query: 253 DVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLG 312
E+ L +LN + ++ +L D P AL FF W +HD +Y M +LG
Sbjct: 330 TAEKALYNLNFSMDAYQANQILKQLQD-PSVALGFFDWLRRQPGFRHDGHTYTTMVGILG 388
Query: 313 REDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPS-V 371
R D K+L++M G + + T +++ + N +KEA++++ +P V
Sbjct: 389 RARRFDSISKLLEQMVKDGCQPNVVTYNRLIHCYGCANYLKEALNVFNEMQEVGCEPDRV 448
Query: 372 NCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKIL 431
CT + + +K + + + + +E G + ++ L G + + +
Sbjct: 449 TYCTLI---DIHAKAGFIDVAMSMYKRMQEAGLSPDTFTYSVIINCLGKAGNLAAAHWLF 505
Query: 432 KAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIK---GH 488
M E G + + + I L + + E + H + DK+ S++ GH
Sbjct: 506 CEMVEHGCVPNL-VTYNIMIALQAKARNYEMALKLYHDMQNAGFQPDKVTYSIVMEALGH 564
Query: 489 CVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKP 548
C G L++A F +M +K LLV+ + A ++ + + L P
Sbjct: 565 C--GYLEEAESVFVEMQQKNWVPDEP-VYGLLVDLWGKAGNVEKASEW-YQAMLNAGLLP 620
Query: 549 WHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPFIKYVS---KSGTSDDAIAFL 605
T L+ L DA +L+ M G P + + +S ++ + D F
Sbjct: 621 NVPTCNSLLSAFLRLHRLPDAYNLVQSMVALGLRPSLQTYTLLLSCCTEAQPAHDMGFFC 680
Query: 606 KGMTSKRFPSMSVVLCLFAA 625
+ M P+ + +L + AA
Sbjct: 681 ELMAVTGHPAHAFLLSMPAA 700
>gi|357130476|ref|XP_003566874.1| PREDICTED: pentatricopeptide repeat-containing protein At3g54980,
mitochondrial-like [Brachypodium distachyon]
Length = 810
Score = 67.8 bits (164), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 85/400 (21%), Positives = 155/400 (38%), Gaps = 40/400 (10%)
Query: 276 KLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEME 335
KLGD +AL R +E GF D +Y M VL + ++ +V DEMR G +M+
Sbjct: 239 KLGDG-GRALRMLREMKEVGFDTCD-FTYRTMVDVLVKTGRMEEALRVNDEMRDAGKKMD 296
Query: 336 METCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLR---------------- 379
+ ++ + R V A++L++ + P+ L+R
Sbjct: 297 VIVATTLMRGYCLRQEVGNALNLFKETLKDGIVPTKVMYGVLIRGCDQVGMTQKAYELCR 356
Query: 380 --------------KIVVSKQLDMRLFSKVVRVFRENGNV-LTDAML-NSVLKALISVGR 423
+V+ L+ R + V +F E + L D N+++ +
Sbjct: 357 QMTGQGLLPSTFELSLVLKGLLNDRRWKDAVCLFEEMADSGLPDVFTYNNLIHWHCQAHK 416
Query: 424 MGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVS 483
+ E + M++ G S N + + G DEA + M G +++
Sbjct: 417 LREALNLFDRMKKAGVKPSINTYNSLLMGYCKKGCMDEAVKLYSEMPMEGFKPNVVTYIT 476
Query: 484 LIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVRE 543
L++G+ D D A +M ++ G S Y ++L+N C +R + + + + E
Sbjct: 477 LMRGYIAKKDFDNAYALLDEM-KQNGVSCNDYTYNVLINGICMVDRVCEVDGMLKSFMSE 535
Query: 544 YDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPFIKYVS---KSGTSDD 600
P TY +I + A ++ M++ G PP + + ++ ++G SD
Sbjct: 536 -GFIPTMMTYNSIINGFVKAGMMGSAFTVYQQMREKGLPPNIITYTSFIDGYCRTGCSDM 594
Query: 601 AIAFLKGMTSKRF-PSMSVVLCLFAAFFQARRHSEAQDLL 639
A+ L + + P + L F Q S A LL
Sbjct: 595 ALKMLNDVRRRGLQPDIVAYNALINGFCQEGNMSHALQLL 634
Score = 57.4 bits (137), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 65/282 (23%), Positives = 108/282 (38%), Gaps = 9/282 (3%)
Query: 282 KKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVK 341
K A+ F +SG D +YN + + + + D M+ G + + T
Sbjct: 384 KDAVCLFEEMADSGL--PDVFTYNNLIHWHCQAHKLREALNLFDRMKKAGVKPSINTYNS 441
Query: 342 VLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRE 401
+L + ++ + EAV LY KP+V L+R + K D ++ ++
Sbjct: 442 LLMGYCKKGCMDEAVKLYSEMPMEGFKPNVVTYITLMRGYIAKKDFDNAY--ALLDEMKQ 499
Query: 402 NGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDE 461
NG D N ++ + V R+ E + +LK+ GFI + + I AG
Sbjct: 500 NGVSCNDYTYNVLINGICMVDRVCEVDGMLKSFMSEGFIPTMMTYNSIINGFVKAGMMGS 559
Query: 462 ANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLV 521
A M G + S I G+C G D A V + G A + L+
Sbjct: 560 AFTVYQQMREKGLPPNIITYTSFIDGYCRTGCSDMALKMLND-VRRRGLQPDIVAYNALI 618
Query: 522 NTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELI---KNL 560
N +C + A + + +++ L P Y LI KNL
Sbjct: 619 NGFCQEGNMSHALQLLVILLKD-GLAPNTVVYNSLITGYKNL 659
Score = 45.8 bits (107), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 76/177 (42%), Gaps = 20/177 (11%)
Query: 415 LKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGS 474
+ AL +G G ++L+ M+E GF + L G+ +EA D M +G
Sbjct: 234 ITALCKLGDGGRALRMLREMKEVGFDTCDFTYRTMVDVLVKTGRMEEALRVNDEMRDAGK 293
Query: 475 DVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDAC 534
+ + +L++G+C+ ++ A + F++ ++ D +V T I C
Sbjct: 294 KMDVIVATTLMRGYCLRQEVGNALNLFKETLK-----------DGIVPTKVMYGVLIRGC 342
Query: 535 KFVHNCVREYDLKPWHT-------TYE--ELIKNLLVQRGFKDALSLLCLMKDHGFP 582
V + Y+L T T+E ++K LL R +KDA+ L M D G P
Sbjct: 343 DQVGMTQKAYELCRQMTGQGLLPSTFELSLVLKGLLNDRRWKDAVCLFEEMADSGLP 399
Score = 45.4 bits (106), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 47/255 (18%), Positives = 106/255 (41%), Gaps = 4/255 (1%)
Query: 303 SYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFA 362
+YN++ + + + + V +MR KG + T + + A+ +
Sbjct: 543 TYNSIINGFVKAGMMGSAFTVYQQMREKGLPPNIITYTSFIDGYCRTGCSDMALKMLNDV 602
Query: 363 MACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVG 422
+P + L+ + L +++ + ++G + NS++ ++
Sbjct: 603 RRRGLQPDIVAYNALINGFCQEGNMSHAL--QLLVILLKDGLAPNTVVYNSLITGYKNLN 660
Query: 423 RMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWV 482
M E +K ++M +GG +A ++ + + S G A E M A G +
Sbjct: 661 MMKEVSKFYESMIKGGIVADTSTYTTLIDGFSKDGNVAFALELYSEMMAKGYIPDAFTFT 720
Query: 483 SLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVR 542
+L G C +GD+D A ++M + + + ++L+N Y + +A + +H+ +
Sbjct: 721 ALTHGLCRSGDIDGAKKLLEEMRRLDVRPNV-FIYNMLINGYLRDCKLQEAFR-LHDEML 778
Query: 543 EYDLKPWHTTYEELI 557
++P TTY+ L+
Sbjct: 779 NMGIQPDDTTYDILV 793
>gi|413952239|gb|AFW84888.1| hypothetical protein ZEAMMB73_407218 [Zea mays]
Length = 668
Score = 67.8 bits (164), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 104/459 (22%), Positives = 179/459 (38%), Gaps = 62/459 (13%)
Query: 166 TYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRNKMTEKFEKE-GLESDLEKLKGI 224
TY ++R++ G V + L+D M ++G + E K G E + L +
Sbjct: 144 TYTPLIRVLCDRGRVADALSLLDDMLRRGCQPNVVTYTVLLEAMCKNSGFEQAMAVLDEM 203
Query: 225 FATGSIDNSI--EKVASRICKVVRSDIWGDDVERQLRD-LNVTFSNDLVKFVVDKLGDEP 281
A G N + + + +C+ R D RD LN FS G +P
Sbjct: 204 RAKGCTPNIVTYNVIINGMCREGRVD--------DARDLLNRLFS----------YGCQP 245
Query: 282 KKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYE---MEMET 338
D SY + L C + W ++E+ ++ E M E
Sbjct: 246 ------------------DTVSYTTLLKGL----CASKRWDDVEELFAEMMEKNCMPNEV 283
Query: 339 CVKVLGRFSER-NMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRL-FSKVV 396
+L RF R MV+ A+ + + + + C ++ I ++D F +
Sbjct: 284 TFDMLIRFFCRGGMVERAIQVLQQMTEHECATNTTLCNIVINSICKQGRVDDAFKFLNNM 343
Query: 397 RVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSA 456
+ N + ++ +VLK L R + ++LK M + + L
Sbjct: 344 GSYGCNPDTIS---YTTVLKGLCRAERWNDAKELLKEMVRNNCPPNEVTFNTFICILCQK 400
Query: 457 GKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYA 516
G ++A ++ M+ G VG + +L+ G CV G +D A + F+ M K T
Sbjct: 401 GLIEQAIMLIEQMQEHGCTVGVVTYNALVNGFCVQGHIDSALELFRSMPCKPNT----IT 456
Query: 517 IDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKD-ALSLLCL 575
L+ C+ R A + V + D P T+ L+ N Q+GF D A+ L+
Sbjct: 457 YTTLLTGLCNAERLDAAAELVAEMLHR-DCPPNVVTFNVLV-NFFCQKGFLDEAIELVEQ 514
Query: 576 MKDHGFPPFV---DPFIKYVSKSGTSDDAIAFLKGMTSK 611
M +HG P + + ++K +S+DA+ L G+ SK
Sbjct: 515 MMEHGCTPNLITYNTLFDGITKDCSSEDALELLHGLVSK 553
Score = 55.5 bits (132), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/158 (24%), Positives = 71/158 (44%), Gaps = 8/158 (5%)
Query: 447 SKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVE 506
+K+ L G+ +A + E SGS V + +L+ G+C G LD A ++++
Sbjct: 79 TKLIRNLCRRGRTSDAARVLRAAEGSGSPVDVFAYNTLVAGYCRYGHLDAA----RRLIG 134
Query: 507 KEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGF 566
+ Y L+ C + R DA + + +R +P TY L++ + GF
Sbjct: 135 SMPVAPDAYTYTPLIRVLCDRGRVADALSLLDDMLRR-GCQPNVVTYTVLLEAMCKNSGF 193
Query: 567 KDALSLLCLMKDHGFPPFV---DPFIKYVSKSGTSDDA 601
+ A+++L M+ G P + + I + + G DDA
Sbjct: 194 EQAMAVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDA 231
Score = 40.4 bits (93), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 50/211 (23%), Positives = 93/211 (44%), Gaps = 14/211 (6%)
Query: 166 TYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRNKMTEKFEKEG-LESDLEKLKGI 224
T+N + I+ GL+++ L++ M++ G V N + F +G ++S LE + +
Sbjct: 389 TFNTFICILCQKGLIEQAIMLIEQMQEHGCTVGVVTYNALVNGFCVQGHIDSALELFRSM 448
Query: 225 FATGSIDNSIE--KVASRICKVVRSDIWGDDVERQL-RDL--NVTFSNDLVKFVVDK-LG 278
N+I + + +C R D + V L RD NV N LV F K
Sbjct: 449 PCK---PNTITYTTLLTGLCNAERLDAAAELVAEMLHRDCPPNVVTFNVLVNFFCQKGFL 505
Query: 279 DEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMET 338
DE A+ E G + +YN + + ++ + ++L + SKG ++ T
Sbjct: 506 DE---AIELVEQMMEHGCTP-NLITYNTLFDGITKDCSSEDALELLHGLVSKGVSPDVIT 561
Query: 339 CVKVLGRFSERNMVKEAVDLYEFAMACKNKP 369
++G S+ + V+EA+ ++ A +P
Sbjct: 562 FSSIIGILSKEDRVEEAIQMFHLAQDIGMRP 592
>gi|225440005|ref|XP_002276355.1| PREDICTED: pentatricopeptide repeat-containing protein At2g37230
[Vitis vinifera]
Length = 763
Score = 67.8 bits (164), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 79/387 (20%), Positives = 156/387 (40%), Gaps = 17/387 (4%)
Query: 235 EKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEES 294
EK+ IC+++ + W ++ +R L F + LV V+ AL FFRW E +
Sbjct: 87 EKIEDIICRMMANRAWTTRLQNSIRSLVPQFDHSLVWNVLHG-SRNSDHALQFFRWVERA 145
Query: 295 GFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKE 354
G +HD ++ + +LGR ++ +L +M KG E + + V ++ + + +V+E
Sbjct: 146 GLFRHDRDTHLKIIEILGRASKLNHARCILLDMPKKGVEWDEDLFVLLIDSYGKAGIVQE 205
Query: 355 AVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDM--RLFSKVVRVFRENGNVLTDAMLN 412
+V +++ + ++ L + I+ + M R F+ ++ G + T N
Sbjct: 206 SVKVFQKMKELGVERTIKSYDALFKVILRRGRYMMAKRYFNAML----NEGVMPTCHTYN 261
Query: 413 SVLKALISVGRMGECNKILKAMEEGGF---IASSNMKSKIAFRLSSAGKKDEANEFMDHM 469
++ ++ N+ + M+E + + N +R+ K +EA +F M
Sbjct: 262 IMIWGFFLSLKVETANRFFEEMKERRISPDVVTYNTMINGYYRIK---KMEEAEKFFVEM 318
Query: 470 EASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNR 529
+ + + ++IKG+ G +D F++M + G L+ C +
Sbjct: 319 KGRNIEPTVISYTTMIKGYVSVGRVDDGLRLFEEM-KSFGIKPNAVTYSTLLPGLCDGEK 377
Query: 530 AIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPF- 588
++A V V Y ++ + LI A +L M P +
Sbjct: 378 MLEAQNVVKEMVERYIAPKDNSIFMRLITCQCKAGQLDAAADVLKAMIRLSIPTEAGHYG 437
Query: 589 --IKYVSKSGTSDDAIAFLKGMTSKRF 613
I+ KSG D A+ L + K
Sbjct: 438 VLIENFCKSGVYDRAVKLLDKLIEKEI 464
Score = 43.1 bits (100), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 57/253 (22%), Positives = 106/253 (41%), Gaps = 40/253 (15%)
Query: 368 KPSVNCCTFLLRKIVVSKQLD--MRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMG 425
+P+V T +++ V ++D +RLF ++ + F N +T +++L L +M
Sbjct: 324 EPTVISYTTMIKGYVSVGRVDDGLRLFEEM-KSFGIKPNAVT---YSTLLPGLCDGEKML 379
Query: 426 ECNKILKAMEEGGFIASSNMKSKIAFRLSS----AGKKDEANEFMDHMEASGSDVGDKMW 481
E ++K M E +IA + + I RL + AG+ D A + + M +
Sbjct: 380 EAQNVVKEMVER-YIAPKD--NSIFMRLITCQCKAGQLDAAADVLKAMIRLSIPTEAGHY 436
Query: 482 VSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCV 541
LI+ C +G D+A K++EKE ++++ + Y N +
Sbjct: 437 GVLIENFCKSGVYDRAVKLLDKLIEKEIILRPQNSLEMESSGY--------------NLI 482
Query: 542 REYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPFIKYVSKSGTSDDA 601
EY T+ E + L+++G +D ++ L++ H SK G + A
Sbjct: 483 IEYLCNSGQTSKAETLFRQLMKKGVQDPIAFNNLIRGH-------------SKEGAPESA 529
Query: 602 IAFLKGMTSKRFP 614
LK M + P
Sbjct: 530 FEILKIMGRREVP 542
>gi|255660862|gb|ACU25600.1| pentatricopeptide repeat-containing protein [Verbena orcuttiana]
Length = 484
Score = 67.8 bits (164), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 86/391 (21%), Positives = 160/391 (40%), Gaps = 49/391 (12%)
Query: 258 LRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCI 317
+R+L +F ++LV V+ + AL FFRW E S +H+ ++ + +LGR +
Sbjct: 3 IRNLVPSFDHELVYNVLHS-SKTSEHALQFFRWVERSNLFEHNRETHLKIIEILGRASKL 61
Query: 318 DRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFL 377
+ +L +M KG E + + V ++ + + +V+E+V
Sbjct: 62 NHARCILLDMPKKGLEWDEDMWVMMIDSYGKEGIVQESV--------------------- 100
Query: 378 LRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEG 437
++F K+ E G T N++ K ++ GR + M
Sbjct: 101 ------------KMFQKM----EELGVERTIKSYNALFKVILRRGRYMMAKRYFNKMLSE 144
Query: 438 GFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKA 497
G + + + + + +GK + AN F + M++ + ++I G+ +++A
Sbjct: 145 GIEPTRHTFNVMIWGFFLSGKVETANRFFEDMKSREISPDVVTYNTMINGYYRVKKMEEA 204
Query: 498 ADCFQKMVEKEGTSHAGYAI--DLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEE 555
F VE +G + + L+ Y S ++ DA + V ++ + +KP TY
Sbjct: 205 EKYF---VEMKGRNIEPTVVTYTTLIKGYVSVDQVDDALRLVEE-MKGFGIKPNAITYST 260
Query: 556 LIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPFI-KYVS---KSGTSDDAIAFLKGMTSK 611
L+ L +A +L M D P + I + +S KSG D A LK M
Sbjct: 261 LLPGLCNAEKMSEARVILKEMMDKYLAPTDNSIIMRLISSHCKSGNLDAAADVLKAMIRL 320
Query: 612 RFPSMSVVL-CLFAAFFQARRHSEAQDLLSK 641
P+ + L F +A ++ +A LL K
Sbjct: 321 SVPTEAGHYGLLIENFCKAGQYDKAVKLLDK 351
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 80/366 (21%), Positives = 159/366 (43%), Gaps = 22/366 (6%)
Query: 265 FSNDLVKFVVDKLGDEP--KKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWK 322
+ D+ ++D G E ++++ F+ EE G V+ SYNA+ V+ R +
Sbjct: 78 WDEDMWVMMIDSYGKEGIVQESVKMFQKMEELG-VERTIKSYNALFKVILRRGRYMMAKR 136
Query: 323 VLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIV 382
++M S+G E T ++ F V+ A +E + + P V ++
Sbjct: 137 YFNKMLSEGIEPTRHTFNVMIWGFFLSGKVETANRFFEDMKSREISPDVVTYNTMINGYY 196
Query: 383 VSKQLDMRLFSKVVRVFRE-NGNVL--TDAMLNSVLKALISVGRMGECNKILKAMEEGGF 439
K+++ + + F E G + T +++K +SV ++ + ++++ M+ G
Sbjct: 197 RVKKME-----EAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDALRLVEEMKGFGI 251
Query: 440 IASSNMKSKIAFRLSSAGKKDEANEFM-DHMEASGSDVGDKMWVSLIKGHCVAGDLDKAA 498
++ S + L +A K EA + + M+ + + + + LI HC +G+LD AA
Sbjct: 252 KPNAITYSTLLPGLCNAEKMSEARVILKEMMDKYLAPTDNSIIMRLISSHCKSGNLDAAA 311
Query: 499 DCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCV-REYDLKPWHT------ 551
D + M+ + AG+ LL+ +C + A K + + ++ L+P T
Sbjct: 312 DVLKAMIRLSVPTEAGH-YGLLIENFCKAGQYDKAVKLLDKLIEKDIILRPQSTLHLEPS 370
Query: 552 TYEELIKNLLVQRGFKDALSLLCLMKDHGF--PPFVDPFIKYVSKSGTSDDAIAFLKGMT 609
Y +I+ L A +L+ + G P ++ I+ S+ G+ D A LK M
Sbjct: 371 AYNSMIEYLCNNGQASKAETLVRQLMKLGVQDPTALNTLIRGHSQEGSPDSAFELLKIML 430
Query: 610 SKRFPS 615
++ S
Sbjct: 431 RRKVDS 436
>gi|255565671|ref|XP_002523825.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223536913|gb|EEF38551.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 528
Score = 67.8 bits (164), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 86/393 (21%), Positives = 158/393 (40%), Gaps = 44/393 (11%)
Query: 283 KALIFFRWA-EESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVK 341
+AL FF WA GF H E YN M + G+ D W+V+D M+++ E+ +ET
Sbjct: 124 QALSFFNWATSRPGFTHHPE-PYNEMIDLAGKVRNFDLGWQVIDLMKARNVEISIETFSI 182
Query: 342 VLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQL-------------- 387
++ R+ + EAV + KP + L+ + ++
Sbjct: 183 LIRRYVRAGLASEAVHAFNRMEDYNCKPDKIAFSILISILCRKRRATEAQSFFDSLKDKF 242
Query: 388 --DMRLFSKVVRVFRENGNV-----------LTDAMLNS-----VLKALISVGRMGECNK 429
D+ +++ +VR + GN+ + M N V+ AL G++ +
Sbjct: 243 EPDVIVYTNLVRGWCRAGNIPEAERVFTEMKVAGCMPNVYTYTIVIDALCRCGQITRAHD 302
Query: 430 ILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHC 489
+ M + G +S + + AG+ ++ + + M+ G + LI+ HC
Sbjct: 303 VFAEMLDVGCEPNSITFNNLLRVHVKAGRTEKVLQVYNQMKRMGCPPDTVTYNFLIESHC 362
Query: 490 VAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPW 549
G+LD+A MV K+G S + L + +K R ++ ++ ++E K
Sbjct: 363 KDGNLDEALKVLNSMV-KKGCSPNASTFNGLFGSI-AKLRDVNGAHRLYAKMKELKCKAN 420
Query: 550 HTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPF---IKYVSKSGTSDDAIAFLK 606
TY L++ + + L L M + P V+ + I G ++A F +
Sbjct: 421 TVTYNILMRMFVDTKSTDMVLKLKKEMDEDDVEPNVNTYCVLIAMYCGMGHWNNAYKFFR 480
Query: 607 GMTSKRF--PSMSV---VLCLFAAFFQARRHSE 634
M ++ PS+ V VL Q ++H E
Sbjct: 481 EMVEEKCLKPSLPVYEKVLQQLRKAGQLKKHEE 513
>gi|255660886|gb|ACU25612.1| pentatricopeptide repeat-containing protein [Verbena intermedia]
Length = 484
Score = 67.8 bits (164), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 79/364 (21%), Positives = 149/364 (40%), Gaps = 48/364 (13%)
Query: 258 LRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCI 317
+R+L +F ++LV V+ + AL FFRW E S +H+ ++ + +LGR +
Sbjct: 3 IRNLVPSFDHELVYNVLHS-SKTSEHALQFFRWVERSNLFEHNRETHLKIIEILGRASKL 61
Query: 318 DRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFL 377
+ +L +M KG E + + V ++ + + +V+E+V
Sbjct: 62 NHARCILLDMPKKGLEWDEDMWVMMIDSYGKEGIVQESV--------------------- 100
Query: 378 LRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEG 437
++F K+ E G T N++ K ++ GR + M
Sbjct: 101 ------------KMFQKM----EELGVERTIKSYNALFKVILRRGRYMMAKRYFNKMLSE 144
Query: 438 GFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKA 497
G + + + + + +GK + AN F + M++ + ++I G+ +++A
Sbjct: 145 GIEPTRHTFNVMIWGFFLSGKVETANRFFEDMKSREISPDVVTYNTMINGYYRVKKMEEA 204
Query: 498 ADCFQKMVEKEGTSHAGYAI--DLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEE 555
F VE +G + + L+ Y S ++ DA + V ++ + +KP TY
Sbjct: 205 EKYF---VEMKGRNIEPTVVTYTTLIKGYVSVDQVDDALRLVEE-MKGFGIKPNAITYST 260
Query: 556 LIKNLLVQRGFKDALSLLCLMKDHGFPPFVDP-FIKYVS---KSGTSDDAIAFLKGMTSK 611
L+ L +A +L M D P + F++ +S KSG D A LK M
Sbjct: 261 LLPGLCNAEKMSEARVILKEMMDKYLAPTDNSIFMRLISSHCKSGNLDAAADVLKAMIRL 320
Query: 612 RFPS 615
P+
Sbjct: 321 SVPT 324
Score = 49.3 bits (116), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 106/498 (21%), Positives = 195/498 (39%), Gaps = 81/498 (16%)
Query: 128 FTHEMVLKVLKNLESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLV 187
F HE+V VL + ++S + A +FF WV + +T+ ++ I+G + ++
Sbjct: 10 FDHELVYNVLHSSKTS-EHALQFFRWVERSNLFEHNRETHLKIIEILGRASKLNHARCIL 68
Query: 188 DVMKKKGYGVASHVRNKMTEKFEKEGLESDLEKLKGIFATGSIDNSIEKVASRICKVVRS 247
M KKG + M + + KEG+ + K+ +E++
Sbjct: 69 LDMPKKGLEWDEDMWVMMIDSYGKEGIVQESVKMF---------QKMEELG--------- 110
Query: 248 DIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAM 307
VER ++ N F V+ + G F + E ++ ++N M
Sbjct: 111 ------VERTIKSYNALFK------VILRRGRYMMAKRYFNKMLSEG--IEPTRHTFNVM 156
Query: 308 A---SVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMA 364
+ G+ + +RF+ ++M+S+ ++ T ++ + ++EA + Y M
Sbjct: 157 IWGFFLSGKVETANRFF---EDMKSREISPDVVTYNTMINGYYRVKKMEEA-EKYFVEMK 212
Query: 365 CKN-KPSVNCCTFLLRKIVVSKQLD--MRLFSKVVRVFRENGNVLTDAMLNSVLKALISV 421
+N +P+V T L++ V Q+D +RL ++ + F N +T +++L L +
Sbjct: 213 GRNIEPTVVTYTTLIKGYVSVDQVDDALRLVEEM-KGFGIKPNAIT---YSTLLPGLCNA 268
Query: 422 GRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSA----GKKDEANEFMDHMEASGSDVG 477
+M E ILK M + + N I RL S+ G D A + + M
Sbjct: 269 EKMSEARVILKEMMDKYLAPTDN---SIFMRLISSHCKSGNLDAAADVLKAMIRLSVPTE 325
Query: 478 DKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFV 537
+ LI+ C G DKA K++EK+ + L + Y
Sbjct: 326 AGHYGXLIENFCKXGQYDKAVKLLDKLIEKDIILRPQSTLHLEPSAY------------- 372
Query: 538 HNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPFIKYVSKSGT 597
N + EY E + L + G +D +L L++ H S+ G+
Sbjct: 373 -NPMIEYLCNNGQXXKAETLVRQLXKLGVQDPTALNTLIRGH-------------SQEGS 418
Query: 598 SDDAIAFLKGMTSKRFPS 615
D A LK M ++ S
Sbjct: 419 PDSAFELLKIMLRRKVBS 436
>gi|297734042|emb|CBI15289.3| unnamed protein product [Vitis vinifera]
Length = 793
Score = 67.8 bits (164), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 68/293 (23%), Positives = 119/293 (40%), Gaps = 13/293 (4%)
Query: 220 KLKGIFATGSIDNSIEKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGD 279
K+ GI S V + +++R WG E LR+LN V+ ++ D
Sbjct: 308 KMIGIAPVSRQFGSSGHVVENVSRILRQLSWGPAAEEALRNLNCLMDAYQANQVLKQIQD 367
Query: 280 EPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETC 339
P AL FF W + KHD +Y M +LGR K+L EM G + + T
Sbjct: 368 HPV-ALGFFYWLKRQTGFKHDGHTYTTMVGILGRARQFGAINKLLAEMVRDGCQPNVVTY 426
Query: 340 VKVLGRFSERNMVKEAVDLYEFAMACKNKPS-VNCCTFL-LRKIVVSKQLDMRLFSKVVR 397
+++ + N + EAV +++ +P V CT + + + + ++ K+
Sbjct: 427 NRLIHSYGRANYLNEAVSVFDRMQEAGCQPDRVTYCTLIDIHAKAGFLDVALHMYQKMQE 486
Query: 398 VFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAG 457
++N + KA G + +K+ M + G + + + + + A
Sbjct: 487 AHLSPDTFTYSVIINCLGKA----GHLTSAHKLFCEMVDQGCVPNLVTYNIMIALQAKAR 542
Query: 458 KKDEANEFMDHMEASGSDVGDKMWVSLIK---GHCVAGDLDKAADCFQKMVEK 507
A E M+ +G DK+ S++ GHC G L++A F +M K
Sbjct: 543 NYPTALELYRDMQNAGFQP-DKVTYSIVMEVLGHC--GHLEEAEAIFTEMKRK 592
>gi|297741611|emb|CBI32743.3| unnamed protein product [Vitis vinifera]
Length = 772
Score = 67.8 bits (164), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 79/387 (20%), Positives = 156/387 (40%), Gaps = 17/387 (4%)
Query: 235 EKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEES 294
EK+ IC+++ + W ++ +R L F + LV V+ AL FFRW E +
Sbjct: 87 EKIEDIICRMMANRAWTTRLQNSIRSLVPQFDHSLVWNVLHG-SRNSDHALQFFRWVERA 145
Query: 295 GFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKE 354
G +HD ++ + +LGR ++ +L +M KG E + + V ++ + + +V+E
Sbjct: 146 GLFRHDRDTHLKIIEILGRASKLNHARCILLDMPKKGVEWDEDLFVLLIDSYGKAGIVQE 205
Query: 355 AVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDM--RLFSKVVRVFRENGNVLTDAMLN 412
+V +++ + ++ L + I+ + M R F+ ++ G + T N
Sbjct: 206 SVKVFQKMKELGVERTIKSYDALFKVILRRGRYMMAKRYFNAML----NEGVMPTCHTYN 261
Query: 413 SVLKALISVGRMGECNKILKAMEEGGF---IASSNMKSKIAFRLSSAGKKDEANEFMDHM 469
++ ++ N+ + M+E + + N +R+ K +EA +F M
Sbjct: 262 IMIWGFFLSLKVETANRFFEEMKERRISPDVVTYNTMINGYYRIK---KMEEAEKFFVEM 318
Query: 470 EASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNR 529
+ + + ++IKG+ G +D F++M + G L+ C +
Sbjct: 319 KGRNIEPTVISYTTMIKGYVSVGRVDDGLRLFEEM-KSFGIKPNAVTYSTLLPGLCDGEK 377
Query: 530 AIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPF- 588
++A V V Y ++ + LI A +L M P +
Sbjct: 378 MLEAQNVVKEMVERYIAPKDNSIFMRLITCQCKAGQLDAAADVLKAMIRLSIPTEAGHYG 437
Query: 589 --IKYVSKSGTSDDAIAFLKGMTSKRF 613
I+ KSG D A+ L + K
Sbjct: 438 VLIENFCKSGVYDRAVKLLDKLIEKEI 464
Score = 43.1 bits (100), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 57/253 (22%), Positives = 106/253 (41%), Gaps = 40/253 (15%)
Query: 368 KPSVNCCTFLLRKIVVSKQLD--MRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMG 425
+P+V T +++ V ++D +RLF ++ + F N +T +++L L +M
Sbjct: 324 EPTVISYTTMIKGYVSVGRVDDGLRLFEEM-KSFGIKPNAVT---YSTLLPGLCDGEKML 379
Query: 426 ECNKILKAMEEGGFIASSNMKSKIAFRLSS----AGKKDEANEFMDHMEASGSDVGDKMW 481
E ++K M E +IA + + I RL + AG+ D A + + M +
Sbjct: 380 EAQNVVKEMVER-YIAPKD--NSIFMRLITCQCKAGQLDAAADVLKAMIRLSIPTEAGHY 436
Query: 482 VSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCV 541
LI+ C +G D+A K++EKE ++++ + Y N +
Sbjct: 437 GVLIENFCKSGVYDRAVKLLDKLIEKEIILRPQNSLEMESSGY--------------NLI 482
Query: 542 REYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPFIKYVSKSGTSDDA 601
EY T+ E + L+++G +D ++ L++ H SK G + A
Sbjct: 483 IEYLCNSGQTSKAETLFRQLMKKGVQDPIAFNNLIRGH-------------SKEGAPESA 529
Query: 602 IAFLKGMTSKRFP 614
LK M + P
Sbjct: 530 FEILKIMGRREVP 542
>gi|357130059|ref|XP_003566674.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
distachyon]
Length = 833
Score = 67.8 bits (164), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 80/342 (23%), Positives = 139/342 (40%), Gaps = 27/342 (7%)
Query: 283 KALIFFRWAEESGFVKHDESSYNAMA---SVLGREDCIDRFWK----VLDEMRSKGYEME 335
KA + R +GF + ++ +YN M S+ G+ WK + EM S+G
Sbjct: 280 KAELVLRQMISNGF-QPNKVTYNCMIHGYSISGQ-------WKETAGMFREMTSQGLMPN 331
Query: 336 METCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKV 395
+ TC + + KEA + ++ A +KP++ + LL F +
Sbjct: 332 IVTCNSYMSSLCKHGKSKEAAEFFDSMAAKGHKPNLVTYSVLLHGYATEG-----CFVDM 386
Query: 396 VRVFRE---NGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFR 452
+ +F NG V + N V+ A G M E I M+E G I + +
Sbjct: 387 LNLFNSMEGNGIVADQRVFNIVIDAYGKRGMMDETMLIFTQMQEQGVIPDACTYGIVIAA 446
Query: 453 LSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSH 512
S G+ +A + + M A G ++ SLI+G C+ G+L KA + +M+ +
Sbjct: 447 FSRMGRLADAMDKFNQMIAMGLKPEGIVYHSLIQGFCMHGNLVKAKELVSEMMSRGIPRP 506
Query: 513 AGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSL 572
+ ++N+ C + R ++A + + V +P T+ LI + + A +
Sbjct: 507 NIVFFNSIINSLCKEGRVVEAHD-IFDFVIHIGERPDVITFNSLIDGYGLVGKIEKAFGV 565
Query: 573 LCLMKDHGFPPFV---DPFIKYVSKSGTSDDAIAFLKGMTSK 611
L M G P V + I ++G DD + M SK
Sbjct: 566 LDAMISAGIEPDVVSYNTLIDGYCRNGRIDDGLILFGEMLSK 607
>gi|297797613|ref|XP_002866691.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297312526|gb|EFH42950.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 638
Score = 67.8 bits (164), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 94/420 (22%), Positives = 168/420 (40%), Gaps = 40/420 (9%)
Query: 199 SHVRNKMTEKFEKEGLESDLEKLKGIFATGSIDNSIEKVASRICKVVRSDIWGDDVERQL 258
+H N T+ + + SD+EK I + K SR+ K+ E L
Sbjct: 65 NHNHNDRTKNSKYDEFASDVEKAYRI---------LRKFHSRVPKL----------ELAL 105
Query: 259 RDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCID 318
+ V L++ V+++ GD FF WA + H Y +M +L +
Sbjct: 106 NESGVELRPGLIERVLNRCGDAGNLGYRFFVWAAKQPRYCHSIEVYKSMVKILSKMRQFG 165
Query: 319 RFWKVLDEMRSKGYEM-EMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFL 377
W +++EMR + ++ E E V ++ RF+ +MVK+A+++ + +P L
Sbjct: 166 AVWGLIEEMRKENPQLIEPELFVVLVQRFASADMVKKAIEVLDEMPTFGLEPDEYVFGCL 225
Query: 378 LRKIVVSKQLD--MRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAME 435
L + + +LF + F N T S+L +M E +L M+
Sbjct: 226 LDALCKHGSVKDAAKLFEDMRLRFPVNLRYFT-----SLLYGWCREEKMMEAKYVLVQMK 280
Query: 436 EGGF----IASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVA 491
E GF + +N+ S A +AGK +A + + M G + + LI+ C
Sbjct: 281 EAGFEPDIVDYTNLLSGYA----NAGKMADAYDLLKDMRRRGFEPNATCYTVLIQALCKV 336
Query: 492 GDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHT 551
+++A F +M E + LV+ +C + ID C V + + + L P
Sbjct: 337 DRMEEAMKVFVEMERYECEADV-VTYTALVSGFCKWGK-IDKCYLVLDDMIKKGLMPSQL 394
Query: 552 TYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPF---IKYVSKSGTSDDAIAFLKGM 608
TY ++ + + L L+ MK + P + + I+ K G +A+ M
Sbjct: 395 TYMHIMAAHEKKEKLIECLELMEKMKQIEYHPDIGIYNVVIRLACKLGEVKEAVRLWNEM 454
>gi|11120809|gb|AAG30989.1|AC012396_25 hypothetical protein [Arabidopsis thaliana]
Length = 466
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 79/388 (20%), Positives = 163/388 (42%), Gaps = 50/388 (12%)
Query: 252 DDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVL 311
DD+E+ L + +V + +V ++ +L E K A FF WA H+ +YN M +L
Sbjct: 8 DDMEKALDESSVDLTTPVVCKILQRLQYEEKTAFRFFTWAGHQEHYSHEPIAYNEMIDIL 67
Query: 312 GREDCIDRFWKVLDEM-----RSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACK 366
++ ++++ +M R+ + ++ +++L ++ ER + + +FA
Sbjct: 68 SSTKYKNKQFRIVIDMLDYMKRNNKTVVLVDVLLEILRKYCERYLTH----VQKFAKR-- 121
Query: 367 NKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGE 426
++I V Q ++ F N +L AL G + E
Sbjct: 122 ------------KRIRVKTQPEINAF-------------------NMLLDALCKCGLVKE 150
Query: 427 CNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIK 486
+L+ M +N + + F +A + ++ M +G + + + I
Sbjct: 151 GEALLRRMRH-RVKPDANTFNVLFFGWCRVRDPKKAMKLLEEMIEAGHKPENFTYCAAID 209
Query: 487 GHCVAGDLDKAADCFQKMVEKEGTSHAGYA--IDLLVNTYCSKNRAIDACKFVHNCVREY 544
C AG +D+AAD F M+ K A A L++ ++A + + + +
Sbjct: 210 TFCQAGMVDEAADLFDFMITKGSAVSAPTAKTFALMIVALAKNDKAEECFELIGRMISTG 269
Query: 545 DLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFV---DPFIKYVSKSGTSDDA 601
L P +TY+++I+ + + +A L M + G+PP + + F++ + ++ +D+A
Sbjct: 270 CL-PDVSTYKDVIEGMCMAEKVDEAYKFLDEMSNKGYPPDIVTYNCFLRVLCENRKTDEA 328
Query: 602 IAFLKGMTSKRF-PSMSVVLCLFAAFFQ 628
+ M R PS+ L + FF+
Sbjct: 329 LKLYGRMVESRCAPSVQTYNMLISMFFE 356
>gi|255660896|gb|ACU25617.1| pentatricopeptide repeat-containing protein [Glandularia subincana]
Length = 484
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 79/364 (21%), Positives = 149/364 (40%), Gaps = 48/364 (13%)
Query: 258 LRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCI 317
+R+L +F ++LV V+ + AL FFRW E S +H+ ++ + +LGR +
Sbjct: 3 IRNLVPSFDHELVYNVLHS-SKTSEHALQFFRWVERSNLFEHNRETHLKIIEILGRASKL 61
Query: 318 DRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFL 377
+ +L +M KG E + + V ++ + + +V+E+V
Sbjct: 62 NHARCILLDMPKKGLEWDEDMWVMMIDSYGKEGIVQESV--------------------- 100
Query: 378 LRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEG 437
++F K+ E G T N++ K ++ GR + M
Sbjct: 101 ------------KMFQKM----EELGVERTIKSYNALFKVILRRGRYMMAKRYFNKMLSE 144
Query: 438 GFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKA 497
G + + + + + +GK + AN F + M++ + ++I G+ +++A
Sbjct: 145 GIEPTRHTFNVMIWGFFLSGKVETANRFFEDMKSREISPDVVTYNTMINGYYRVKKMEEA 204
Query: 498 ADCFQKMVEKEGTSHAGYAIDL--LVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEE 555
F VE +G + + L+ Y S ++ DA + V ++ + +KP TY
Sbjct: 205 EKYF---VEMKGRNIEPTVVTYTTLIKGYVSVDQVDDALRLVEE-MKGFGIKPNAITYST 260
Query: 556 LIKNLLVQRGFKDALSLLCLMKDHGFPPFVDP-FIKYVS---KSGTSDDAIAFLKGMTSK 611
L+ L +A +L M D P + F++ +S KSG D A LK M
Sbjct: 261 LLPGLCNAEKMSEARVILKEMMDKYLAPTDNXIFMRLISSHCKSGNLDAAADVLKAMIRL 320
Query: 612 RFPS 615
P+
Sbjct: 321 SVPT 324
Score = 58.5 bits (140), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 79/366 (21%), Positives = 160/366 (43%), Gaps = 22/366 (6%)
Query: 265 FSNDLVKFVVDKLGDEP--KKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWK 322
+ D+ ++D G E ++++ F+ EE G V+ SYNA+ V+ R +
Sbjct: 78 WDEDMWVMMIDSYGKEGIVQESVKMFQKMEELG-VERTIKSYNALFKVILRRGRYMMAKR 136
Query: 323 VLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIV 382
++M S+G E T ++ F V+ A +E + + P V ++
Sbjct: 137 YFNKMLSEGIEPTRHTFNVMIWGFFLSGKVETANRFFEDMKSREISPDVVTYNTMINGYY 196
Query: 383 VSKQLDMRLFSKVVRVFRE-NGNVL--TDAMLNSVLKALISVGRMGECNKILKAMEEGGF 439
K+++ + + F E G + T +++K +SV ++ + ++++ M+ G
Sbjct: 197 RVKKME-----EAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDALRLVEEMKGFGI 251
Query: 440 IASSNMKSKIAFRLSSAGKKDEANEFM-DHMEASGSDVGDKMWVSLIKGHCVAGDLDKAA 498
++ S + L +A K EA + + M+ + + +++ LI HC +G+LD AA
Sbjct: 252 KPNAITYSTLLPGLCNAEKMSEARVILKEMMDKYLAPTDNXIFMRLISSHCKSGNLDAAA 311
Query: 499 DCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCV-REYDLKPWHT------ 551
D + M+ + AG+ +L+ +C + A K + + ++ L+P T
Sbjct: 312 DVLKAMIRLSVPTEAGH-YGVLIENFCKXGQYDKAVKLLDKLIEKDIILRPQSTLHLEPS 370
Query: 552 TYEELIKNLLVQRGFKDALSLLCLMKDHGF--PPFVDPFIKYVSKSGTSDDAIAFLKGMT 609
Y +I+ L A +L+ + G P ++ I+ S+ G+ D A LK M
Sbjct: 371 AYNPMIEYLCNNGQAXKAETLVRQLXKLGVQDPTALNTLIRGHSQEGSPDSAFELLKIML 430
Query: 610 SKRFPS 615
++ S
Sbjct: 431 RRKVDS 436
>gi|125563733|gb|EAZ09113.1| hypothetical protein OsI_31378 [Oryza sativa Indica Group]
Length = 618
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 99/465 (21%), Positives = 185/465 (39%), Gaps = 27/465 (5%)
Query: 133 VLKVLKNLESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLVDVMKK 192
VL + + + PDEA F + E + + + +V H L + W L D M
Sbjct: 111 VLVIALSQMALPDEALSVFGRLRELPALPACNAILD---GLVKAHMLAR-VWELFDEMLG 166
Query: 193 KGYGVASHVRNKMTEKFEKEGLESDLEKLKGIFATGSIDNSIEKVASRICKVVRSDIWGD 252
+G + N + +G + ++ ID ++ + I + D GD
Sbjct: 167 RGMVPSVVTYNTLINACRHQGDVAKAWEVWDQMVARRIDPNVVTYTTMIYALCEEDCIGD 226
Query: 253 ------DVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNA 306
+++ N+ N L+ + D K AL+F+ + G V +D +
Sbjct: 227 AEGLFLEMKEAGMRPNLYTYNALMSSHFKR--DNIKHALVFYYDLLKCGLVPND-VIFTT 283
Query: 307 MASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVK---VLGRFSERNMVKEAVDLYEFAM 363
+ L + + I + +M YE+ V + G F +EA+ ++ +
Sbjct: 284 LIDGLCKANRITEAKNIFLDMPR--YEVAPTVPVYNSLIHGAF-RSGYAQEALAFFQEII 340
Query: 364 ACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGR 423
+ +P C+ ++R + Q M++ ++ + V +++G L A N ++ G
Sbjct: 341 RKELRPDEFTCSIVVRGLCDGGQ--MQVATRFLEVMQQSGIALNAAAYNVLIDEYCKSGN 398
Query: 424 MGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVS 483
+ E M E G + S + S G+ + A M A G + + +
Sbjct: 399 LDEALVTCTRMSEVGVEPNVVTYSSLIDGHSKNGEMEIAMAIYTEMVAKGVEPNVVTYTA 458
Query: 484 LIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFV--HNCV 541
LI GH GD+D AA QK +E++G + +LV+ C +NR DA +F+ ++
Sbjct: 459 LIHGHAKNGDMD-AAFWLQKEMEEKGIYSNAITVSVLVDGLCRENRVQDAVRFIMEYSGQ 517
Query: 542 REYDLKPW---HTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPP 583
++ + P TY LI L + + +A M+D G P
Sbjct: 518 KKSEKNPSIANSVTYMTLIYGLYIDGQYNEACHFFSCMRDSGMVP 562
Score = 39.3 bits (90), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 63/331 (19%), Positives = 128/331 (38%), Gaps = 21/331 (6%)
Query: 303 SYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFA 362
+YN + + + + + W+V D+M ++ + + T ++ E + + +A L+
Sbjct: 175 TYNTLINACRHQGDVAKAWEVWDQMVARRIDPNVVTYTTMIYALCEEDCIGDAEGLFLEM 234
Query: 363 MACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFREN----GNVLTDAMLNSVLKAL 418
+P++ L+ + L VF + G V D + +++ L
Sbjct: 235 KEAGMRPNLYTYNALMSSHFKRDNIKHAL------VFYYDLLKCGLVPNDVIFTTLIDGL 288
Query: 419 ISVGRMGECNKILKAM---EEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSD 475
R+ E I M E + N AFR +G EA F +
Sbjct: 289 CKANRITEAKNIFLDMPRYEVAPTVPVYNSLIHGAFR---SGYAQEALAFFQEIIRKELR 345
Query: 476 VGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACK 535
+ +++G C G + + A F +++++ G + A ++L++ YC K+ +D
Sbjct: 346 PDEFTCSIVVRGLCDGGQM-QVATRFLEVMQQSGIALNAAAYNVLIDEYC-KSGNLDEAL 403
Query: 536 FVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPFIKYV--- 592
+ E ++P TY LI + A+++ M G P V + +
Sbjct: 404 VTCTRMSEVGVEPNVVTYSSLIDGHSKNGEMEIAMAIYTEMVAKGVEPNVVTYTALIHGH 463
Query: 593 SKSGTSDDAIAFLKGMTSKRFPSMSVVLCLF 623
+K+G D A K M K S ++ + +
Sbjct: 464 AKNGDMDAAFWLQKEMEEKGIYSNAITVSVL 494
>gi|255660930|gb|ACU25634.1| pentatricopeptide repeat-containing protein [Priva cordifolia]
Length = 484
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 84/389 (21%), Positives = 160/389 (41%), Gaps = 45/389 (11%)
Query: 258 LRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCI 317
+R+L +F ++LV V+ + AL FFRW E S ++H+ + + +LGR +
Sbjct: 3 IRNLVPSFDHELVYNVLHG-AKNAEHALQFFRWVERSNLLEHNREIHLKIIEILGRASKL 61
Query: 318 DRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFL 377
+ +L +M KG E + + V ++ + + +V+E+V
Sbjct: 62 NHARCILLDMPKKGLEWDEDMWVMMIDSYGKAGIVQESV--------------------- 100
Query: 378 LRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEG 437
+LF K+ E G T +++ K + GR + M
Sbjct: 101 ------------KLFQKM----EELGVERTIKSYDALFKVISRRGRYMMSKRYFNKMVNE 144
Query: 438 GFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKA 497
G + + + + + +GK + AN F + M++ + ++I G+ +++A
Sbjct: 145 GIEPTRHTFNVLIWGFFLSGKVETANRFFEDMKSREITPDVITYNTMINGYNRVKKMEEA 204
Query: 498 ADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELI 557
F +M E++ L+ Y S +R DA + V ++ +KP TY L+
Sbjct: 205 EKYFLEMKERK-IDPTVVTYTTLIKGYASVDRVDDALRLVEE-MKGLGIKPNAITYSTLL 262
Query: 558 KNLLVQRGFKDALSLLCLMKDHGFPPFVDP-FIKYVS---KSGTSDDAIAFLKGMTSKRF 613
L +A S+L M D P + F++ +S K+G D A LK M
Sbjct: 263 PGLCNAEKMSEARSILKEMVDKYVAPTDNSIFMRLISSQCKAGNLDAAADVLKAMIRLSV 322
Query: 614 PSMSVVLCLFAAFF-QARRHSEAQDLLSK 641
P+ + + ++ +A ++ +A LL K
Sbjct: 323 PTEAGHYGVLIEYYCKAGQYDKAVKLLDK 351
Score = 52.4 bits (124), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 114/513 (22%), Positives = 197/513 (38%), Gaps = 111/513 (21%)
Query: 128 FTHEMVLKVLKNLESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWG-- 185
F HE+V VL +++ + A +FF WV E L + L+I+ + G +
Sbjct: 10 FDHELVYNVLHGAKNA-EHALQFFRWV---ERSNLLEHNREIHLKIIEILGRASKLNHAR 65
Query: 186 --LVDVMKKKG--------------YGVASHVRN--KMTEKFEKEGLESDLEKLKGIFAT 227
L+D M KKG YG A V+ K+ +K E+ G+E ++ +F
Sbjct: 66 CILLD-MPKKGLEWDEDMWVMMIDSYGKAGIVQESVKLFQKMEELGVERTIKSYDALF-- 122
Query: 228 GSIDNSIEKVASRICKVVRSDIWGDD-VERQLRDLNVTFSNDLVKFVVDKLGDEPKKALI 286
KV SR + + S + + V + TF+ + F L + + A
Sbjct: 123 --------KVISRRGRYMMSKRYFNKMVNEGIEPTRHTFNVLIWGFF---LSGKVETANR 171
Query: 287 FFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRF 346
FF +S + D +YN M + R ++ K EM+ + + + T ++ +
Sbjct: 172 FFE-DMKSREITPDVITYNTMINGYNRVKKMEEAEKYFLEMKERKIDPTVVTYTTLIKGY 230
Query: 347 SERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVL 406
+ + V +A+ L E KP N T+
Sbjct: 231 ASVDRVDDALRLVEEMKGLGIKP--NAITY------------------------------ 258
Query: 407 TDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSS----AGKKDEA 462
+++L L + +M E ILK M + ++A ++ + I RL S AG D A
Sbjct: 259 -----STLLPGLCNAEKMSEARSILKEMVDK-YVAPTD--NSIFMRLISSQCKAGNLDAA 310
Query: 463 NEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVN 522
+ + M + LI+ +C AG DKA K++EK D+++
Sbjct: 311 ADVLKAMIRLSVPTEAGHYGVLIEYYCKAGQYDKAVKLLDKLIEK----------DIILR 360
Query: 523 TYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFP 582
+ + + A +N + EY T E + L++ G +D SL L++ H
Sbjct: 361 PQSTLHMELSA----YNPLIEYLCNNGQTAKAETLVRQLMKLGVQDPTSLNTLIRGH--- 413
Query: 583 PFVDPFIKYVSKSGTSDDAIAFLKGMTSKRFPS 615
S+ G+ D A LK M ++ S
Sbjct: 414 ----------SQEGSPDSAFELLKIMLRRKVDS 436
>gi|224075802|ref|XP_002304774.1| predicted protein [Populus trichocarpa]
gi|222842206|gb|EEE79753.1| predicted protein [Populus trichocarpa]
Length = 728
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 71/296 (23%), Positives = 125/296 (42%), Gaps = 13/296 (4%)
Query: 250 WGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMAS 309
WG +V +L L + DLV V+ K+ + P+ A FF WA + KH +SYNA A
Sbjct: 111 WGPEVVTELCKLR-RVTPDLVAEVL-KVENNPQLATKFFHWAGKQKGFKHTFASYNAFAY 168
Query: 310 VLGRED---CIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACK 366
L R + D+ ++++ E + E +++ S+ N +Y+ +
Sbjct: 169 NLNRSNFFRAADQLPELMEAQGKPPTEKQFEILIRM---HSDANRGLRVYYVYQKMVKFG 225
Query: 367 NKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGE 426
KP V ++ ++ + LD+ L V FR +G V ++K L GR+ E
Sbjct: 226 VKPRVFLYNRIMDSLIKTGHLDLAL--SVYEDFRRDGLVEESVTYMILIKGLCKAGRIEE 283
Query: 427 CNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIK 486
++L M E + + L+ G D + M+ G + +V+L+
Sbjct: 284 MMEVLGRMRENLCKPDVFAYTAMVRALAGEGNLDACLRVWEEMKRDGVEPDVMAYVTLVT 343
Query: 487 GHCVAGDLDKAADCFQKMVEKEGTSHAG-YAIDLLVNTYCSKNRAIDACKFVHNCV 541
C G +DK + F++M + G Y I LV + + + AC + + V
Sbjct: 344 ALCKGGRVDKGYEVFKEMKGRRILIDRGIYGI--LVEAFVADGKIGLACDLLKDLV 397
>gi|255660884|gb|ACU25611.1| pentatricopeptide repeat-containing protein [Verbena litoralis]
Length = 484
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 79/364 (21%), Positives = 149/364 (40%), Gaps = 48/364 (13%)
Query: 258 LRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCI 317
+R+L +F ++LV V+ + AL FFRW E S +H+ ++ + +LGR +
Sbjct: 3 IRNLVPSFDHELVYNVLHS-SKTSEHALQFFRWVERSNLFEHNRETHLKIIEILGRASKL 61
Query: 318 DRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFL 377
+ +L +M KG E + + V ++ + + +V+E+V
Sbjct: 62 NHARCILLDMPKKGLEWDEDMWVMMIDSYGKEXIVQESV--------------------- 100
Query: 378 LRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEG 437
++F K+ E G T N++ K ++ GR + M
Sbjct: 101 ------------KMFQKM----EELGVERTIKSYNALFKVILRRGRYMMAKRYFNKMLSE 144
Query: 438 GFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKA 497
G + + + + + +GK + AN F + M++ + ++I G+ +++A
Sbjct: 145 GIEPTRHTFNVMIWGFFLSGKVETANRFFEDMKSREISPDVVTYNTMINGYYRVKKMEEA 204
Query: 498 ADCFQKMVEKEGTSHAGYAIDL--LVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEE 555
F VE +G + + L+ Y S ++ DA + V ++ + +KP TY
Sbjct: 205 EKYF---VEMKGRNIEPTVVTYTTLIKGYVSVDQVDDALRLVEE-MKGFGIKPNAITYST 260
Query: 556 LIKNLLVQRGFKDALSLLCLMKDHGFPPFVDP-FIKYVS---KSGTSDDAIAFLKGMTSK 611
L+ L +A +L M D P + F++ +S KSG D A LK M
Sbjct: 261 LLPGLCNAEXMSEARVILKEMMDKYLAPTDNSIFMRLISSHCKSGNLDAAADVLKAMIRL 320
Query: 612 RFPS 615
P+
Sbjct: 321 SVPT 324
Score = 55.8 bits (133), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 78/368 (21%), Positives = 159/368 (43%), Gaps = 22/368 (5%)
Query: 263 VTFSNDLVKFVVDKLGDEP--KKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRF 320
+ + D+ ++D G E ++++ F+ EE G V+ SYNA+ V+ R
Sbjct: 76 LEWDEDMWVMMIDSYGKEXIVQESVKMFQKMEELG-VERTIKSYNALFKVILRRGRYMMA 134
Query: 321 WKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRK 380
+ ++M S+G E T ++ F V+ A +E + + P V ++
Sbjct: 135 KRYFNKMLSEGIEPTRHTFNVMIWGFFLSGKVETANRFFEDMKSREISPDVVTYNTMING 194
Query: 381 IVVSKQLDMRLFSKVVRVFRE-NGNVL--TDAMLNSVLKALISVGRMGECNKILKAMEEG 437
K+++ + + F E G + T +++K +SV ++ + ++++ M+
Sbjct: 195 YYRVKKME-----EAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDALRLVEEMKGF 249
Query: 438 GFIASSNMKSKIAFRLSSAGKKDEANEFM-DHMEASGSDVGDKMWVSLIKGHCVAGDLDK 496
G ++ S + L +A EA + + M+ + + +++ LI HC +G+LD
Sbjct: 250 GIKPNAITYSTLLPGLCNAEXMSEARVILKEMMDKYLAPTDNSIFMRLISSHCKSGNLDA 309
Query: 497 AADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCV-REYDLKPWHT---- 551
AAD + M+ + AG+ L+ +C + A K + + ++ L+P T
Sbjct: 310 AADVLKAMIRLSVPTEAGH-YGXLIENFCKXGQYDKAVKLLDKLIEKDIILRPQSTLHLE 368
Query: 552 --TYEELIKNLLVQRGFKDALSLLCLMKDHGF--PPFVDPFIKYVSKSGTSDDAIAFLKG 607
Y +I+ L A +L+ + G P ++ I+ S+ G+ D A LK
Sbjct: 369 PSAYNPMIEYLCNNGQAXKAETLVRQLXKLGVQDPTALNTLIRGHSQEGSPDSAFELLKI 428
Query: 608 MTSKRFPS 615
M ++ S
Sbjct: 429 MLRRKVDS 436
>gi|224111362|ref|XP_002315826.1| predicted protein [Populus trichocarpa]
gi|222864866|gb|EEF01997.1| predicted protein [Populus trichocarpa]
Length = 636
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 98/458 (21%), Positives = 198/458 (43%), Gaps = 22/458 (4%)
Query: 166 TYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRNKMTEKFEKEGLESD----LEKL 221
TYN+M+ V G + L + MKK G N + + + K GL + E++
Sbjct: 134 TYNIMIGHVCKEGDMLTARSLFEQMKKMGLTPDIVTYNTLIDGYGKIGLLDESVCLFEEM 193
Query: 222 KGIFATGSIDNSIEKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEP 281
K + + + + + CK + + + R+++D ++ + ++D L E
Sbjct: 194 KFMGCEPDVI-TYNALINSFCKF-KGMLRAFEFFREMKDKDLKPNVISYSTLIDALCKEG 251
Query: 282 --KKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETC 339
+ A+ FF G + +E +Y+++ + + + + DEM + ++ + T
Sbjct: 252 MMQMAIKFFVDMTRVGLLP-NEFTYSSLIDANCKAGNLGEAFMLADEMLQEHVDLNIVTY 310
Query: 340 VKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLD--MRLFSKVVR 397
+L E M+ EA +L+ P++ T L+ + + +D M LF+++
Sbjct: 311 TTLLDGLCEEGMMNEAEELFRAMGKAGVTPNLQAYTALIHGHIKVRSMDKAMELFNEM-- 368
Query: 398 VFRENGNVLTDAML-NSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSA 456
RE ++ D +L +++ L S ++ EC I+ M+E G A+ + + + A
Sbjct: 369 --REK-DIKPDILLWGTIVWGLCSESKLEECKIIMTEMKESGIGANPVIYTTLMDAYFKA 425
Query: 457 GKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYA 516
G + EA ++ M G++V + +LI G C G + +A F +M + + +
Sbjct: 426 GNRTEAINLLEEMRDLGTEVTVVTFCALIDGLCKRGLVQEAIYYFGRMPDHDLQPNVA-V 484
Query: 517 IDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLM 576
L++ C KN I K + + +++ ++ P Y +I L F++AL++ M
Sbjct: 485 YTALIDGLC-KNNCIGDAKKLFDEMQDKNMIPDKIAYTAMIDGNLKHGNFQEALNMRNKM 543
Query: 577 KDHGFPPFVDPFIKYV---SKSGTSDDAIAFLKGMTSK 611
+ G + + V S+ G A FL M K
Sbjct: 544 MEMGIELDLYAYTSLVWGLSQCGQVQQARKFLAEMIGK 581
Score = 40.4 bits (93), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 45/198 (22%), Positives = 89/198 (44%), Gaps = 17/198 (8%)
Query: 323 VLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIV 382
+L+EMR G E+ + T ++ +R +V+EA+ + +P+V T L+ +
Sbjct: 434 LLEEMRDLGTEVTVVTFCALIDGLCKRGLVQEAIYYFGRMPDHDLQPNVAVYTALIDGLC 493
Query: 383 VSKQLD--MRLFSKVVRVFRENGNVLTD-----AMLNSVLKALISVGRMGECNKILKAME 435
+ + +LF ++ ++ N++ D AM++ LK G E + M
Sbjct: 494 KNNCIGDAKKLFDEM-----QDKNMIPDKIAYTAMIDGNLKH----GNFQEALNMRNKMM 544
Query: 436 EGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLD 495
E G + + + LS G+ +A +F+ M G + + L++ H G++D
Sbjct: 545 EMGIELDLYAYTSLVWGLSQCGQVQQARKFLAEMIGKGIIPDETLCTRLLRKHYELGNID 604
Query: 496 KAADCFQKMVEKEGTSHA 513
+A + ++VEK G H
Sbjct: 605 EAIELQNELVEK-GLIHG 621
>gi|356534319|ref|XP_003535704.1| PREDICTED: pentatricopeptide repeat-containing protein At1g71060,
mitochondrial-like [Glycine max]
Length = 507
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 96/406 (23%), Positives = 174/406 (42%), Gaps = 16/406 (3%)
Query: 238 ASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFV 297
A IC+++ S V+ L + S +LV V++KL + AL FFRWAE+
Sbjct: 58 AEAICRIL-STTPASTVDACLAAVPAKPSPELVLEVLNKLSNAGVLALSFFRWAEKQSEF 116
Query: 298 KHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVD 357
KH +++A+ LG+ W ++++M+ + + +T V R++ KEA+
Sbjct: 117 KHTTEAFHALIEALGKIRQFKMIWTLVNDMKQRKL-LTSDTFSLVARRYARARKAKEAIK 175
Query: 358 LYEFAMACKNKPSVNCCTFLLRKIVVSKQLD--MRLFSKVVRVFRENGNVLTDAMLNSVL 415
+E KP V+ L+ + SK ++ +F K +R R + ++ + +L L
Sbjct: 176 TFEKMEHYGLKPHVSDFNKLVDVLCKSKSVEEAHEVFDK-MRKLRLDPDIKSYTIL---L 231
Query: 416 KALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSD 475
+ + + N++ + ME+ GF I A K DEA M+A G
Sbjct: 232 EGWSQQQNLIKVNEVCREMEDKGFQLDVVAYGIIMNAHCKAKKFDEAIGLYHEMKARGVR 291
Query: 476 VGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACK 535
++ +LI G LD+A + F+ + + G + +V YC R DA +
Sbjct: 292 PSPHVYCTLINGLGSDKRLDEALEFFE-VSKASGFVPEAPTYNAVVGAYCWSLRMDDAYR 350
Query: 536 FVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMK--DHGFPPFVDPF---IK 590
V +++ + P T++ ++ +L+ R ++A S+ M + G P V + ++
Sbjct: 351 MVGE-MKKCGIGPNSRTFDIVLHHLIKGRRIEEASSVFRRMNGGEFGCEPSVSTYEIMVR 409
Query: 591 YVSKSGTSDDAIAFLKGMTSKR-FPSMSVVLCLFAAFFQARRHSEA 635
D A+A M K P M + L A + EA
Sbjct: 410 MFCNEELLDMAVAVWDEMKGKGILPGMHMFSTLVCALCHESKLDEA 455
Score = 46.2 bits (108), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 96/460 (20%), Positives = 178/460 (38%), Gaps = 82/460 (17%)
Query: 131 EMVLKVLKNLESSPDEARRFFNWVLEKESE-RLSSKTYNLMLRIVGVHGLVQEFWGLVDV 189
E+VL+VL L ++ A FF W EK+SE + +++ ++ ++ +G + W LV+
Sbjct: 87 ELVLEVLNKLSNAGVLALSFFRWA-EKQSEFKHTTEAFHALIEALGKIRQFKMIWTLVND 145
Query: 190 MKKKGYGVASHVR---------------NKMTEKFEKEGLE---SDLEKLKGIFATGSID 231
MK++ + K EK E GL+ SD KL +
Sbjct: 146 MKQRKLLTSDTFSLVARRYARARKAKEAIKTFEKMEHYGLKPHVSDFNKLVDVLCKS--- 202
Query: 232 NSIEKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWA 291
S+E+ D R+LR D+ + + G W+
Sbjct: 203 KSVEEAHEVF-----------DKMRKLR-----LDPDIKSYTILLEG-----------WS 235
Query: 292 EESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNM 351
++ +K +E V EM KG+++++ ++ +
Sbjct: 236 QQQNLIKVNE---------------------VCREMEDKGFQLDVVAYGIIMNAHCKAKK 274
Query: 352 VKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAML 411
EA+ LY A +PS + L+ + K+LD L + V + +G V
Sbjct: 275 FDEAIGLYHEMKARGVRPSPHVYCTLINGLGSDKRLDEAL--EFFEVSKASGFVPEAPTY 332
Query: 412 NSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEA 471
N+V+ A RM + +++ M++ G +S + L + +EA+ M
Sbjct: 333 NAVVGAYCWSLRMDDAYRMVGEMKKCGIGPNSRTFDIVLHHLIKGRRIEEASSVFRRM-- 390
Query: 472 SGSDVGDKMWVS----LIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSK 527
+G + G + VS +++ C LD A + +M K G + LV C +
Sbjct: 391 NGGEFGCEPSVSTYEIMVRMFCNEELLDMAVAVWDEMKGK-GILPGMHMFSTLVCALCHE 449
Query: 528 NRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFK 567
++ +ACK+ + + ++P + L K LV G +
Sbjct: 450 SKLDEACKYFQEML-DVGIRPPAKMFSTL-KEALVDAGME 487
>gi|224093190|ref|XP_002309826.1| predicted protein [Populus trichocarpa]
gi|222852729|gb|EEE90276.1| predicted protein [Populus trichocarpa]
Length = 1480
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 72/364 (19%), Positives = 153/364 (42%), Gaps = 8/364 (2%)
Query: 281 PKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCV 340
P+ A +AE G + ++ S Y + GR + V +R + ++ +
Sbjct: 758 PETAHHLIDFAESDGILLNNISLYVNVIEAYGRLKLWQKAESVAGNLRQRCITVDRKVWN 817
Query: 341 KVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFR 400
++ ++ + A ++ M P+V+ LL+ ++V +LD L+ VV+ +
Sbjct: 818 ALIEAYAASGCYERARAIFNTMMRDGPSPTVDTINGLLQALIVDGRLD-ELYV-VVQELQ 875
Query: 401 ENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKD 460
+ G ++ + + +L A G + E KI M+ G+ + ++ +A LS +
Sbjct: 876 DMGFKISKSSILLMLDAFARAGNIFEVKKIYHGMKAAGYFPTMHLYRVMARLLSRGKQVR 935
Query: 461 EANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLL 520
+ + ME +G +W S++K + D K +Q+ ++++G + L
Sbjct: 936 DVEAMLSEMEEAGFKPDLSIWNSVLKMYVAIEDFRKTIQVYQR-IKEDGLEPDEDTYNTL 994
Query: 521 VNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHG 580
+ YC +R + +H +R L+P TY+ L+ + Q+ + A L ++ G
Sbjct: 995 IVMYCRDHRPEEGFSLMHE-MRVAGLEPKLDTYKSLVASFGKQQLVEQAEELFEELQSKG 1053
Query: 581 FP---PFVDPFIKYVSKSGTSDDAIAFLKGMTSKRF-PSMSVVLCLFAAFFQARRHSEAQ 636
F +K SG+ A M P+++ + L ++ + + EA+
Sbjct: 1054 CKLDRSFYHTMMKIYRNSGSHSKAERLFSMMKDAGVEPTIATMHLLMVSYGSSGQPQEAE 1113
Query: 637 DLLS 640
+LS
Sbjct: 1114 KVLS 1117
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 73/380 (19%), Positives = 169/380 (44%), Gaps = 66/380 (17%)
Query: 145 DEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRNK 204
+ AR FN ++ ++ + T N +L+ + V G + E + +V ++ G+ ++
Sbjct: 830 ERARAIFNTMM-RDGPSPTVDTINGLLQALIVDGRLDELYVVVQELQDMGFKISKSSILL 888
Query: 205 MTEKFEKEGLESDLEKL------KGIFATGSIDNSIEKVASRICKVVRSDIWGDDVERQL 258
M + F + G +++K+ G F T + + ++ SR K VR DVE L
Sbjct: 889 MLDAFARAGNIFEVKKIYHGMKAAGYFPTMHLYRVMARLLSR-GKQVR------DVEAML 941
Query: 259 RDL-------NVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVL 311
++ +++ N ++K V ++ +K + ++ +E G ++ DE +YN + +
Sbjct: 942 SEMEEAGFKPDLSIWNSVLKMYVAI--EDFRKTIQVYQRIKEDG-LEPDEDTYNTLIVMY 998
Query: 312 GREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSV 371
R+ + + ++ EMR G E +++T ++ F ++ +V++A +L+E S
Sbjct: 999 CRDHRPEEGFSLMHEMRVAGLEPKLDTYKSLVASFGKQQLVEQAEELFE------ELQSK 1052
Query: 372 NCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKIL 431
C +LD + +++++R +G+ + ++
Sbjct: 1053 GC------------KLDRSFYHTMMKIYRNSGS-------------------HSKAERLF 1081
Query: 432 KAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVA 491
M++ G + + S+G+ EA + + +++ +GS++ + S+I +
Sbjct: 1082 SMMKDAGVEPTIATMHLLMVSYGSSGQPQEAEKVLSNLKETGSNLSTLPYSSVIDAYLRN 1141
Query: 492 GDLDKAADCFQKMVE--KEG 509
GD + QK+++ KEG
Sbjct: 1142 GDYNIG---IQKLIQMKKEG 1158
>gi|115441099|ref|NP_001044829.1| Os01g0852900 [Oryza sativa Japonica Group]
gi|18461197|dbj|BAB84394.1| putative fertility restorer [Oryza sativa Japonica Group]
gi|113534360|dbj|BAF06743.1| Os01g0852900 [Oryza sativa Japonica Group]
gi|125572662|gb|EAZ14177.1| hypothetical protein OsJ_04103 [Oryza sativa Japonica Group]
Length = 703
Score = 67.4 bits (163), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 82/349 (23%), Positives = 150/349 (42%), Gaps = 19/349 (5%)
Query: 297 VKHDESSYNAMASVLGREDCIDRFWKVLDEM-RSKGYEMEMETCVKVLGRFSERNMVKEA 355
V+ D YNA+ + ++ +V D++ + G + T +L + KE
Sbjct: 224 VQPDVVCYNALLGGCFKAGEFEKVMRVWDKLVKDPGARPNLATYNVMLDGLCKFGRFKEV 283
Query: 356 VDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLD--MRLFSKVVRVFRENGNVLTDAMLNS 413
+++E +A +P V L+ + S +D R++S++++ G V+ AM NS
Sbjct: 284 GEVWERMVANNLQPDVITYGILIHGLCRSGDVDGAARVYSEIIK----TGLVIDAAMYNS 339
Query: 414 VLKALISVGRMGECNKILKAMEEGGFIASSNMKS-KIAFR-LSSAGKKDEANEFMDHMEA 471
++K GR+ E K + GF N+++ I + L +G DEA E D +E
Sbjct: 340 LVKGFCQAGRVQEAWKF---WDSAGFAGLRNLRTYNIMIKGLFDSGMVDEAIELWDLLEK 396
Query: 472 SGSDVGDKM-WVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRA 530
+ + D + + +LI G C G +KA F++ G ++ ++N C+ R
Sbjct: 397 DVACIPDTVTFGTLIHGLCQNGFANKAFTIFEE-ARVSGKQLDVFSYSSMINGLCNVGRL 455
Query: 531 IDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFV---DP 587
+DA K V+ + + KP Y LI DA+ + M D+G P V +
Sbjct: 456 VDAVK-VYEKMDKDGCKPNSHIYNALISGFCQVYRTSDAVRIYSKMADNGCSPTVITYNT 514
Query: 588 FIKYVSKSGTSDDAIAFLKGMTSKRF-PSMSVVLCLFAAFFQARRHSEA 635
I + K+ +A + + M F P ++ L F ++ +A
Sbjct: 515 LIDGLCKAEKYQEASSVAREMVENGFTPDITTYGSLIRGLFSDKKIDDA 563
Score = 49.3 bits (116), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 92/454 (20%), Positives = 176/454 (38%), Gaps = 26/454 (5%)
Query: 145 DEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLVDVMKKKG-------YGV 197
++ R ++ +++ R + TYN+ML + G +E + + M YG+
Sbjct: 245 EKVMRVWDKLVKDPGARPNLATYNVMLDGLCKFGRFKEVGEVWERMVANNLQPDVITYGI 304
Query: 198 ASHVRNKMTEKFEKEGLESDLEKLKGIFATGSIDNSIEKVASRICKVVRS----DIWGDD 253
H + + + S++ K G+ ++ NS+ K + +V + D G
Sbjct: 305 LIHGLCRSGDVDGAARVYSEIIK-TGLVIDAAMYNSLVKGFCQAGRVQEAWKFWDSAGFA 363
Query: 254 VERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGR 313
R LR N+ +VD+ A+ + E+ D ++ + L +
Sbjct: 364 GLRNLRTYNIMIKGLFDSGMVDE-------AIELWDLLEKDVACIPDTVTFGTLIHGLCQ 416
Query: 314 EDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNC 373
++ + + +E R G ++++ + ++ + +AV +YE KP+ +
Sbjct: 417 NGFANKAFTIFEEARVSGKQLDVFSYSSMINGLCNVGRLVDAVKVYEKMDKDGCKPNSHI 476
Query: 374 CTFLLRKIV-VSKQLD-MRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKIL 431
L+ V + D +R++SK+ +NG T N+++ L + E + +
Sbjct: 477 YNALISGFCQVYRTSDAVRIYSKMA----DNGCSPTVITYNTLIDGLCKAEKYQEASSVA 532
Query: 432 KAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVA 491
+ M E GF + L S K D+A + G V M LI G C A
Sbjct: 533 REMVENGFTPDITTYGSLIRGLFSDKKIDDALSIWKQILYKGLKVDVMMHNILIHGLCSA 592
Query: 492 GDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHT 551
G +D+A F M EK+ + L++ + ID + + E L+P
Sbjct: 593 GKVDEALHVFSDMKEKKNCPPNLVTYNTLMDGL-YETGYIDKAATLWTSITEDGLEPDII 651
Query: 552 TYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFV 585
+Y IK L + + LL + G P V
Sbjct: 652 SYNTRIKGLCSCDRIHEGIQLLDEVLSRGIIPTV 685
Score = 45.8 bits (107), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 43/197 (21%), Positives = 82/197 (41%), Gaps = 5/197 (2%)
Query: 303 SYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFA 362
+YN + L +DR + D +R + + T ++ ++++ + A+DL +
Sbjct: 160 TYNIVLRSLCARGDLDRAVTLFDSLRRRQVAPDRITYSTLMCGLAKQDRLDHALDLLDEM 219
Query: 363 MACKNKPSVNCCTFLLRKIVVSKQLD--MRLFSKVVRVFRENGNVLTDAMLNSVLKALIS 420
+ +P V C LL + + + MR++ K+V+ + G A N +L L
Sbjct: 220 PRSRVQPDVVCYNALLGGCFKAGEFEKVMRVWDKLVK---DPGARPNLATYNVMLDGLCK 276
Query: 421 VGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKM 480
GR E ++ + M + L +G D A + +G + M
Sbjct: 277 FGRFKEVGEVWERMVANNLQPDVITYGILIHGLCRSGDVDGAARVYSEIIKTGLVIDAAM 336
Query: 481 WVSLIKGHCVAGDLDKA 497
+ SL+KG C AG + +A
Sbjct: 337 YNSLVKGFCQAGRVQEA 353
>gi|297848576|ref|XP_002892169.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297338011|gb|EFH68428.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 662
Score = 67.4 bits (163), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 79/392 (20%), Positives = 153/392 (39%), Gaps = 51/392 (13%)
Query: 259 RDLNVTFSNDLVKFVV--DKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDC 316
R + S + V FV+ D++ ++P A FF W+ + H+ Y ++ VL
Sbjct: 108 RKFLIKLSPNFVSFVLKSDEIREKPDIAWSFFCWSRKQKKYTHNLECYVSLVDVLALAKD 167
Query: 317 IDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTF 376
+DR + E+R + M + ++ F + MV+E + ++
Sbjct: 168 VDRIRFICSEIRKFEFPMTVSPGNSLIKSFGKLGMVEELLWVW----------------- 210
Query: 377 LLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEE 436
R +ENG T N ++ L+S + ++ + ME
Sbjct: 211 --------------------RKMKENGIEPTLYTYNFLMNGLVSAMFVDSAERVFEVMES 250
Query: 437 GGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDK 496
G + + AG+ +A E + ME G + ++++I+ D
Sbjct: 251 GRIKPDVVTYNTMIKGYCKAGQTQKALEKLRVMETKGLEADKITYMTMIQACYADSDFSS 310
Query: 497 AADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEEL 556
+Q+M EK G +A L++ C + + + N +R+ KP Y L
Sbjct: 311 CVALYQEMDEK-GLQVPPHAFSLVIGGLCKEGKLNEGYAVFENMIRKGS-KPNVAIYTVL 368
Query: 557 IKNLLVQRGFKDALSLLCLMKDHGFPPFVDPF---IKYVSKSGTSDDAIAFLKGMTSKRF 613
I +DA+ LL M D GF P V + + + K+G ++A+ + + + RF
Sbjct: 369 IDGYAKTGSVEDAIRLLHRMIDEGFNPDVVTYSVVVNGLCKNGRVEEAMDYFQ---TCRF 425
Query: 614 PSMSVVLCLFAAFF----QARRHSEAQDLLSK 641
+++ +++ +A R EA+ L +
Sbjct: 426 NGLAINSMFYSSLIDGLGKAGRVDEAERLFEE 457
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 92/421 (21%), Positives = 171/421 (40%), Gaps = 37/421 (8%)
Query: 136 VLKN--LESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLVDVMKKK 193
VLK+ + PD A FF W +++ + + Y ++ ++ + V + ++K
Sbjct: 122 VLKSDEIREKPDIAWSFFCWSRKQKKYTHNLECYVSLVDVLALAKDVDRIRFICSEIRKF 181
Query: 194 GYGVASHVRNKMTEKFEKEGLESDL----EKLK--GIFAT---------GSIDNSIEKVA 238
+ + N + + F K G+ +L K+K GI T G + A
Sbjct: 182 EFPMTVSPGNSLIKSFGKLGMVEELLWVWRKMKENGIEPTLYTYNFLMNGLVSAMFVDSA 241
Query: 239 SRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVK 298
R+ +V+ S DV VT+ N ++K + +KAL R E G ++
Sbjct: 242 ERVFEVMESGRIKPDV--------VTY-NTMIKGYCK--AGQTQKALEKLRVMETKG-LE 289
Query: 299 HDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDL 358
D+ +Y M + + EM KG ++ V+G + + E +
Sbjct: 290 ADKITYMTMIQACYADSDFSSCVALYQEMDEKGLQVPPHAFSLVIGGLCKEGKLNEGYAV 349
Query: 359 YEFAMACKNKPSVNCCTFLLRKIVVSKQLD--MRLFSKVV-RVFRENGNVLTDAMLNSVL 415
+E + +KP+V T L+ + ++ +RL +++ F N +V+T ++ V+
Sbjct: 350 FENMIRKGSKPNVAIYTVLIDGYAKTGSVEDAIRLLHRMIDEGF--NPDVVTYSV---VV 404
Query: 416 KALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSD 475
L GR+ E + G +S S + L AG+ DEA + M G
Sbjct: 405 NGLCKNGRVEEAMDYFQTCRFNGLAINSMFYSSLIDGLGKAGRVDEAERLFEEMSEKGCT 464
Query: 476 VGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACK 535
+ +LI G +D+A F++M E+EG Y +L++ ++R +A K
Sbjct: 465 RDSYCYNALIDAFTKHGKVDEALALFKRMEEEEGCDQTVYTYTILISGMFKEHRNEEALK 524
Query: 536 F 536
Sbjct: 525 L 525
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 61/293 (20%), Positives = 117/293 (39%), Gaps = 7/293 (2%)
Query: 293 ESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMV 352
ESG +K D +YN M + + + L M +KG E + T + ++ +
Sbjct: 249 ESGRIKPDVVTYNTMIKGYCKAGQTQKALEKLRVMETKGLEADKITYMTMIQACYADSDF 308
Query: 353 KEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLD--MRLFSKVVRVFRENGNVLTDAM 410
V LY+ + + + ++ + +L+ +F ++R G+ A+
Sbjct: 309 SSCVALYQEMDEKGLQVPPHAFSLVIGGLCKEGKLNEGYAVFENMIR----KGSKPNVAI 364
Query: 411 LNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHME 470
++ G + + ++L M + GF S + L G+ +EA ++
Sbjct: 365 YTVLIDGYAKTGSVEDAIRLLHRMIDEGFNPDVVTYSVVVNGLCKNGRVEEAMDYFQTCR 424
Query: 471 ASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRA 530
+G + + SLI G AG +D+A F++M EK G + Y + L++ + +
Sbjct: 425 FNGLAINSMFYSSLIDGLGKAGRVDEAERLFEEMSEK-GCTRDSYCYNALIDAFTKHGKV 483
Query: 531 IDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPP 583
+A E TY LI + + ++AL L +M D G P
Sbjct: 484 DEALALFKRMEEEEGCDQTVYTYTILISGMFKEHRNEEALKLWDMMIDKGITP 536
>gi|356551209|ref|XP_003543970.1| PREDICTED: pentatricopeptide repeat-containing protein At1g22960,
mitochondrial-like [Glycine max]
Length = 687
Score = 67.4 bits (163), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 75/306 (24%), Positives = 139/306 (45%), Gaps = 30/306 (9%)
Query: 273 VVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGY 332
V++ + + P AL FFRWAE K E SY+ + +L R + + V++++ S
Sbjct: 53 VLNTVRNRPVVALRFFRWAERQTGFKRSEISYSVILDILARNGLMRSAYCVMEKVVS--- 109
Query: 333 EMEMETCVKVLGRFSERNM--VKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQL--D 388
++ME V + SE +M VK +DL + K + C + K+ VSK L D
Sbjct: 110 -VKMENGVIDVVSSSEVSMPSVKLILDLLLWIYV--KKSLLEKCLLVFYKM-VSKGLLPD 165
Query: 389 MRLFSKVVRVFRENGNVL-----------------TDAMLNSVLKALISVGRMGECNKIL 431
++ ++V+R+ R+ N + T N++L + G + E ++L
Sbjct: 166 VKNCNRVLRLLRDRDNNIDVAREVYNVMVECGICPTVVTYNTMLDSFCKKGMVQEALQLL 225
Query: 432 KAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVA 491
M+ G + + + LS +G+ ++A E + M G +V + LI+G+C
Sbjct: 226 FQMQAMGCSPNDVTYNVLVNGLSHSGEMEQAKELIQDMLRLGLEVSVYTYDPLIRGYCEK 285
Query: 492 GDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHT 551
G +++A+ ++M+ + G + ++ C R DA K + V + +L P
Sbjct: 286 GQIEEASRLGEEMLSR-GAVPTVVTYNTIMYGLCKWGRVSDARKLLDVMVNK-NLMPDLV 343
Query: 552 TYEELI 557
+Y LI
Sbjct: 344 SYNTLI 349
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 79/405 (19%), Positives = 170/405 (41%), Gaps = 39/405 (9%)
Query: 131 EMVLKVLKNLESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFW------ 184
+++++VL + + P A RFF W + + S +Y+++L I+ +GL++ +
Sbjct: 48 KLLVRVLNTVRNRPVVALRFFRWAERQTGFKRSEISYSVILDILARNGLMRSAYCVMEKV 107
Query: 185 -------GLVDVMKKKGYGVAS--HVRNKMTEKFEKEGLESDLEKLKGIFATGSIDNSIE 235
G++DV+ + S + + + + K+ L LEK +F +
Sbjct: 108 VSVKMENGVIDVVSSSEVSMPSVKLILDLLLWIYVKKSL---LEKCLLVFYKMVSKGLLP 164
Query: 236 KV--ASRICKVVRSDIWGDDVERQLRDLN---------VTFSNDLVKFVVDKLGDEPKKA 284
V +R+ +++R DV R++ ++ VT++ L F + E A
Sbjct: 165 DVKNCNRVLRLLRDRDNNIDVAREVYNVMVECGICPTVVTYNTMLDSFCKKGMVQE---A 221
Query: 285 LIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLG 344
L + G +D +YN + + L +++ +++ +M G E+ + T ++
Sbjct: 222 LQLLFQMQAMGCSPND-VTYNVLVNGLSHSGEMEQAKELIQDMLRLGLEVSVYTYDPLIR 280
Query: 345 RFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQL-DMRLFSKVVRVFRENG 403
+ E+ ++EA L E ++ P+V ++ + ++ D R V+ N
Sbjct: 281 GYCEKGQIEEASRLGEEMLSRGAVPTVVTYNTIMYGLCKWGRVSDARKLLDVM----VNK 336
Query: 404 NVLTDAM-LNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEA 462
N++ D + N+++ +G +GE + + S + + L G D A
Sbjct: 337 NLMPDLVSYNTLIYGYTRLGNIGEAFLLFAELRYRSLAPSVVTYNTLIDGLCRLGDLDVA 396
Query: 463 NEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEK 507
D M G D + + ++G C G+L A + F +M+ +
Sbjct: 397 MRLKDEMIKHGPDPDVFTFTTFVRGFCKMGNLPMAKELFDEMLNR 441
>gi|297723047|ref|NP_001173887.1| Os04g0351333 [Oryza sativa Japonica Group]
gi|255675359|dbj|BAH92615.1| Os04g0351333 [Oryza sativa Japonica Group]
Length = 740
Score = 67.4 bits (163), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 64/321 (19%), Positives = 127/321 (39%), Gaps = 5/321 (1%)
Query: 322 KVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKI 381
+V +M S G ++ C + + EA +++ + KP + + +L
Sbjct: 174 RVFKQMSSCGVIPTVDNCNSFIHALFKHGRTNEAKCIFDSMVLKGPKPDIISYSTMLHGY 233
Query: 382 VVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIA 441
+ + + + G + N ++ A G M + I + M+ G I
Sbjct: 234 ATATDSCLADVHNIFNLMLTKGIAPNKHVFNILINAYARCGMMDKAMLIFEDMQNKGMIP 293
Query: 442 SSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCF 501
+ + + L G+ D+A +HM G + ++ LI+G C G+L KA +
Sbjct: 294 DTVTFATVISSLCRIGRLDDALHKFNHMVDIGVPPSEAVYGCLIQGCCNHGELVKAKELI 353
Query: 502 QKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLL 561
+M+ K+ ++N C + R + K + + + + +P T+ L++
Sbjct: 354 SEMMNKDIPPPGVKYFSSIINNLCKEGRVAEG-KDIMDMMVQTGQRPNVVTFNSLMEGYC 412
Query: 562 VQRGFKDALSLLCLMKDHGFPP---FVDPFIKYVSKSGTSDDAIAFLKGMTSKRFPSMSV 618
+ ++A +LL M G P + K+G DDA+ + M K SV
Sbjct: 413 LVGNMEEAFALLDAMASIGIEPNCYIYGTLVDGYCKNGRIDDALTVFRDMLHKGVKPTSV 472
Query: 619 VL-CLFAAFFQARRHSEAQDL 638
+ + FQARR + A+ +
Sbjct: 473 LYSIILHGLFQARRTTAAKKM 493
Score = 43.5 bits (101), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 76/161 (47%), Gaps = 11/161 (6%)
Query: 457 GKKDEAN-EFMDHMEASGSDVGDKMWV--SLIKGHCVAGDLDKAADCFQKMVEKEGTSHA 513
G+ D+A+ F++ ME V K+ + S+IK C ++DKA QKMV+ G +
Sbjct: 62 GEVDKAHCLFLEMMEQG---VLPKILICNSIIKELCKMKEMDKAESIVQKMVD-SGIAPD 117
Query: 514 GYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLL 573
+ L+++ C K++A+D + V + E +P TY LI + + +++ +
Sbjct: 118 LFTYSLIIDGLC-KSKAMDKAERVLEQMVEAGTRPNSITYNSLIHGYSISGMWNESVRVF 176
Query: 574 CLMKDHGFPPFVD---PFIKYVSKSGTSDDAIAFLKGMTSK 611
M G P VD FI + K G +++A M K
Sbjct: 177 KQMSSCGVIPTVDNCNSFIHALFKHGRTNEAKCIFDSMVLK 217
>gi|147834641|emb|CAN60904.1| hypothetical protein VITISV_016343 [Vitis vinifera]
Length = 580
Score = 67.4 bits (163), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 95/411 (23%), Positives = 169/411 (41%), Gaps = 49/411 (11%)
Query: 256 RQLRDLNVTFSNDLVK----FVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVL 311
R+L D +T S D + V D L + KKA F + E GF K + SYN +
Sbjct: 161 RELFD-ELTLSRDRLSVKSSIVFDLLEGKLKKAREFIGFMEGLGF-KPNVVSYNTIIHGY 218
Query: 312 GREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSV 371
I+ ++LD MR KG E + T ++ + ++EA L++ + P+
Sbjct: 219 SSRGNIEGARRILDAMRVKGIEPDSYTYGSLISGMCKEGRLEEASGLFDKMVEIGLVPNA 278
Query: 372 NCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKIL 431
L+ L+ R FS + ++ G + + + N ++ AL GRMGE + ++
Sbjct: 279 VTYNTLIDGYCNKGDLE-RAFSYRDEMVKK-GIMPSVSTYNLLVHALFMEGRMGEADDMI 336
Query: 432 KAMEEGGFIASS------------------------NMKSK-----------IAFRLSSA 456
K M + G I + M SK + + LS
Sbjct: 337 KEMRKKGIIPDAITYNILINGYSRCGNAKRAFDLHNEMLSKGIEPTHVTYTSLIYVLSRR 396
Query: 457 GKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYA 516
+ EA++ + + G M+ ++I GHC G++++A ++M +++
Sbjct: 397 NRMKEADDLFEKILDQGVSPDVIMFNAMIDGHCANGNVERAFMLLKEM-DRKSVPPDEVT 455
Query: 517 IDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLM 576
+ L+ C + + ++ + + + ++ +KP H +Y LI + KDA + M
Sbjct: 456 FNTLMQGRCREGK-VEEARMLLDEMKXRGIKPDHISYNTLISGYGRRGDIKDAFXVRDEM 514
Query: 577 KDHGFPPFV---DPFIKYVSKSGTSDDAIAFLKGMTSKRF-PSMSVVLCLF 623
GF P + + IK + K+ D A LK M +K P S L L
Sbjct: 515 LSIGFNPTLLTYNALIKCLCKNQEGDLAEELLKEMVNKGISPDDSTYLSLI 565
Score = 59.3 bits (142), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 57/224 (25%), Positives = 92/224 (41%), Gaps = 6/224 (2%)
Query: 422 GRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMW 481
G++ + + + ME GF + + I SS G + A +D M G + +
Sbjct: 187 GKLKKAREFIGFMEGLGFKPNVVSYNTIIHGYSSRGNIEGARRILDAMRVKGIEPDSYTY 246
Query: 482 VSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCV 541
SLI G C G L++A+ F KMVE G + L++ YC+K A + V
Sbjct: 247 GSLISGMCKEGRLEEASGLFDKMVEI-GLVPNAVTYNTLIDGYCNKGDLERAFSYRDEMV 305
Query: 542 REYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPP---FVDPFIKYVSKSGTS 598
++ + P +TY L+ L ++ +A ++ M+ G P + I S+ G +
Sbjct: 306 KK-GIMPSVSTYNLLVHALFMEGRMGEADDMIKEMRKKGIIPDAITYNILINGYSRCGNA 364
Query: 599 DDAIAFLKGMTSKRF-PSMSVVLCLFAAFFQARRHSEAQDLLSK 641
A M SK P+ L + R EA DL K
Sbjct: 365 KRAFDLHNEMLSKGIEPTHVTYTSLIYVLSRRNRMKEADDLFEK 408
Score = 44.7 bits (104), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 92/432 (21%), Positives = 168/432 (38%), Gaps = 59/432 (13%)
Query: 140 LESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVAS 199
LE +AR F + +E + + +YN ++ G ++ ++D M+ KG S
Sbjct: 185 LEGKLKKAREFIGF-MEGLGFKPNVVSYNTIIHGYSSRGNIEGARRILDAMRVKGIEPDS 243
Query: 200 HVRNKMTEKFEKEGLESDLEKLKGIF----ATGSIDNSI--EKVASRICK---VVRSDIW 250
+ + KEG LE+ G+F G + N++ + C + R+ +
Sbjct: 244 YTYGSLISGMCKEG---RLEEASGLFDKMVEIGLVPNAVTYNTLIDGYCNKGDLERAFSY 300
Query: 251 GDDVERQLRDLNVTFSNDLVK--FVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMA 308
D++ ++ +V+ N LV F+ ++G+ A + + G + D +YN +
Sbjct: 301 RDEMVKKGIMPSVSTYNLLVHALFMEGRMGE----ADDMIKEMRKKGIIP-DAITYNILI 355
Query: 309 SVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNK 368
+ R R + + +EM SKG E T ++ S RN +KEA DL+E +
Sbjct: 356 NGYSRCGNAKRAFDLHNEMLSKGIEPTHVTYTSLIYVLSRRNRMKEADDLFEKILDQGVS 415
Query: 369 PSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECN 428
P D+ +F+ ++ NGNV ML
Sbjct: 416 P------------------DVIMFNAMIDGHCANGNVERAFML----------------- 440
Query: 429 KILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGH 488
LK M+ + + GK +EA +D M+ G + +LI G+
Sbjct: 441 --LKEMDRKSVPPDEVTFNTLMQGRCREGKVEEARMLLDEMKXRGIKPDHISYNTLISGY 498
Query: 489 CVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKP 548
GD+ A +M+ G + + L+ C KN+ D + + + + P
Sbjct: 499 GRRGDIKDAFXVRDEMLSI-GFNPTLLTYNALIKCLC-KNQEGDLAEELLKEMVNKGISP 556
Query: 549 WHTTYEELIKNL 560
+TY LI+ +
Sbjct: 557 DDSTYLSLIEGM 568
>gi|255544107|ref|XP_002513116.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223548127|gb|EEF49619.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 1128
Score = 67.4 bits (163), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 76/332 (22%), Positives = 136/332 (40%), Gaps = 30/332 (9%)
Query: 229 SIDNSIEKVASRICKVVR---------SDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGD 279
S ++S+ ++ R+ + R S+ WG V +LR L + DLV V+ K+ +
Sbjct: 515 SQNHSLSTLSQRLSPISRFIRDAFRKNSNKWGPPVVAELRKLR-RVTPDLVSEVL-KVEN 572
Query: 280 EPKKALIFFRWAEESGFVKHDESSYNAMASVLGRED---CIDRFWKVLDEMRSKGYEMEM 336
+P A FF WA + +H+ +SYNA A L R D+ +++D E +
Sbjct: 573 DPHLASQFFHWAGKQKGYRHNFASYNAYAYCLNRSSFFRAADQLPELMDSQGKPPTEKQF 632
Query: 337 ETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVV 396
E +++ S+ N +Y+ KP ++ ++ + LD+ L V
Sbjct: 633 EILIRM---HSDANRGLRVYHVYQKMKKFGVKPRAFLYNRIMDALIKTAHLDLALV--VY 687
Query: 397 RVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSA 456
F+ +G V ++K L GR+ E ++ + M+ G + + L
Sbjct: 688 DDFKSDGLVEDSVTYMILIKGLCKFGRIDEMMEVWEEMKRDGVNPDVMAYATVVTGLCKG 747
Query: 457 GKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYA 516
G+ E E M+ + + ++ LI+ G + A D Q +V+ +GY
Sbjct: 748 GRVAEGYELFKEMKENKVLIDRAIYGVLIEAFVKDGKIGSACDLLQGLVD------SGYR 801
Query: 517 IDL-----LVNTYCSKNRAIDACKFVHNCVRE 543
DL L+ C+ R A K V+E
Sbjct: 802 ADLGIYNSLIEGLCNVKRVDKARKLFQIMVQE 833
>gi|125528410|gb|EAY76524.1| hypothetical protein OsI_04465 [Oryza sativa Indica Group]
Length = 703
Score = 67.4 bits (163), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 82/349 (23%), Positives = 150/349 (42%), Gaps = 19/349 (5%)
Query: 297 VKHDESSYNAMASVLGREDCIDRFWKVLDEM-RSKGYEMEMETCVKVLGRFSERNMVKEA 355
V+ D YNA+ + ++ +V D++ + G + T +L + KE
Sbjct: 224 VQPDVVCYNALLGGCFKAGEFEKVMRVWDKLVKDPGARPNLATYNVMLDGLCKFGRFKEV 283
Query: 356 VDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLD--MRLFSKVVRVFRENGNVLTDAMLNS 413
+++E +A +P V L+ + S +D R++S++++ G V+ AM NS
Sbjct: 284 GEVWERMVANNLQPDVITYGILIHGLCRSGDVDGAARVYSEIIK----TGLVIDAAMYNS 339
Query: 414 VLKALISVGRMGECNKILKAMEEGGFIASSNMKS-KIAFR-LSSAGKKDEANEFMDHMEA 471
++K GR+ E K + GF N+++ I + L +G DEA E D +E
Sbjct: 340 LVKGFCQAGRVQEAWKF---WDSAGFAGLRNLRTYNIMIKGLFDSGMVDEAIELWDLLEK 396
Query: 472 SGSDVGDKM-WVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRA 530
+ + D + + +LI G C G +KA F++ G ++ ++N C+ R
Sbjct: 397 DVACIPDTVTFGTLIHGLCQNGFANKAFTIFEE-ARVSGKQLDVFSYSSMINGLCNVGRL 455
Query: 531 IDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFV---DP 587
+DA K V+ + + KP Y LI DA+ + M D+G P V +
Sbjct: 456 VDAVK-VYEKMDKDGCKPNSHIYNALISGFCQVYRTSDAVRIYSKMADNGCSPTVITYNT 514
Query: 588 FIKYVSKSGTSDDAIAFLKGMTSKRF-PSMSVVLCLFAAFFQARRHSEA 635
I + K+ +A + + M F P ++ L F ++ +A
Sbjct: 515 LIDGLCKAEKYQEASSVAREMVENGFTPDITTYGSLIRGLFSDKKIDDA 563
Score = 50.1 bits (118), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 92/454 (20%), Positives = 176/454 (38%), Gaps = 26/454 (5%)
Query: 145 DEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLVDVMKKKG-------YGV 197
++ R ++ +++ R + TYN+ML + G +E + + M YG+
Sbjct: 245 EKVMRVWDKLVKDPGARPNLATYNVMLDGLCKFGRFKEVGEVWERMVANNLQPDVITYGI 304
Query: 198 ASHVRNKMTEKFEKEGLESDLEKLKGIFATGSIDNSIEKVASRICKVVRS----DIWGDD 253
H + + + S++ K G+ ++ NS+ K + +V + D G
Sbjct: 305 LIHGLCRSGDVDGAARVYSEIIK-TGLVIDAAMYNSLVKGFCQAGRVQEAWKFWDSAGFA 363
Query: 254 VERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGR 313
R LR N+ +VD+ A+ + E+ D ++ + L +
Sbjct: 364 GLRNLRTYNIMIKGLFDSGMVDE-------AIELWDLLEKDVACIPDTVTFGTLIHGLCQ 416
Query: 314 EDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNC 373
++ + + +E R G ++++ + ++ + +AV +YE KP+ +
Sbjct: 417 NGFANKAFTIFEEARVSGKQLDVFSYSSMINGLCNVGRLVDAVKVYEKMDKDGCKPNSHI 476
Query: 374 CTFLLRKIV-VSKQLD-MRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKIL 431
L+ V + D +R++SK+ +NG T N+++ L + E + +
Sbjct: 477 YNALISGFCQVYRTSDAVRIYSKMA----DNGCSPTVITYNTLIDGLCKAEKYQEASSVA 532
Query: 432 KAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVA 491
+ M E GF + L S K D+A + G V M LI G C A
Sbjct: 533 REMVENGFTPDITTYGSLIRGLFSDKKIDDALSIWKQILYKGLKVDVMMHNILIHGLCSA 592
Query: 492 GDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHT 551
G +D+A F M EK+ + L++ + ID + + E L+P
Sbjct: 593 GKVDEALHVFSDMKEKKNCPPNLVTYNTLMDGL-YETGYIDKAATLWTSITEDGLEPDII 651
Query: 552 TYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFV 585
+Y IK L + + LL + G P V
Sbjct: 652 SYNTRIKGLCSCDRIHEGIQLLDEVLSRGIIPTV 685
Score = 45.1 bits (105), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 43/197 (21%), Positives = 81/197 (41%), Gaps = 5/197 (2%)
Query: 303 SYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFA 362
+YN + L +DR + D +R + + T ++ ++++ + A+DL +
Sbjct: 160 TYNIVLRSLCARGDLDRAVTLFDSLRRRQVAPDCITYSTLMCGLAKQDRLDHALDLLDEM 219
Query: 363 MACKNKPSVNCCTFLLRKIVVSKQLD--MRLFSKVVRVFRENGNVLTDAMLNSVLKALIS 420
+P V C LL + + + MR++ K+V+ + G A N +L L
Sbjct: 220 PRSGVQPDVVCYNALLGGCFKAGEFEKVMRVWDKLVK---DPGARPNLATYNVMLDGLCK 276
Query: 421 VGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKM 480
GR E ++ + M + L +G D A + +G + M
Sbjct: 277 FGRFKEVGEVWERMVANNLQPDVITYGILIHGLCRSGDVDGAARVYSEIIKTGLVIDAAM 336
Query: 481 WVSLIKGHCVAGDLDKA 497
+ SL+KG C AG + +A
Sbjct: 337 YNSLVKGFCQAGRVQEA 353
>gi|297853270|ref|XP_002894516.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297340358|gb|EFH70775.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 477
Score = 67.0 bits (162), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 90/389 (23%), Positives = 154/389 (39%), Gaps = 22/389 (5%)
Query: 238 ASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVV---------DKLGDEPKKALIFF 288
ASR+ ++ D G + + L DLNVT S LV+ V+ D K A FF
Sbjct: 80 ASRVLDTLQQDCPGFNTKSALDDLNVTISGLLVREVLVGILRTLSYDNKTRCAKLAYKFF 139
Query: 289 RWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSE 348
W +H + Y+ + + +++DEM GY T ++ E
Sbjct: 140 VWFGGQENFRHTANCYHLLMKIFAECGEYKAMCRLIDEMIKDGYPTTACTFNLLICTCGE 199
Query: 349 RNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENG---NV 405
+ ++ V+ + + +P + +L ++ KQ +L V E+G +V
Sbjct: 200 AGLARDVVEQFIKSKTFNYRPYKHSYNAILHSLLGVKQY--KLIDWVYEQMLEDGFSPDV 257
Query: 406 LTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEF 465
LT N V+ A +G+ ++L M + GF + + L++ K A
Sbjct: 258 LT---YNIVMFANFRLGKTDRLYRLLDEMVKDGFSPDLYTYNILLHHLATGNKPLAALNL 314
Query: 466 MDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYC 525
+ HM G + G + +L+ G AG L+ +MV K G + +++ Y
Sbjct: 315 LTHMREVGVEPGVIHFTTLVDGLSRAGKLEACKYFMDEMV-KVGCTPDVVCYTVMITGYI 373
Query: 526 SKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGF-PPF 584
S A + + L P TY +I+ + FK+A SLL M+ G P F
Sbjct: 374 SGGELEKAEEMFKEMTEKGQL-PNVFTYNSMIRGFCMAGKFKEACSLLKEMESRGCNPNF 432
Query: 585 V--DPFIKYVSKSGTSDDAIAFLKGMTSK 611
V + + +G +A +K M K
Sbjct: 433 VVYSTLVNNLRNAGKVLEAHEIVKDMVEK 461
Score = 49.7 bits (117), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 80/344 (23%), Positives = 135/344 (39%), Gaps = 27/344 (7%)
Query: 147 ARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRNKMT 206
A +FF W +E+ R ++ Y+L+++I G + L+D M K GY + N +
Sbjct: 135 AYKFFVWFGGQENFRHTANCYHLLMKIFAECGEYKAMCRLIDEMIKDGYPTTACTFNLLI 194
Query: 207 EKFEKEGLESDLEKL---KGIFATGSIDNSIEKVASRICKVVRSDIWGDDVERQLRDLNV 263
+ GL D+ + F +S + + V + + E+ L D
Sbjct: 195 CTCGEAGLARDVVEQFIKSKTFNYRPYKHSYNAILHSLLGVKQYKLIDWVYEQMLED--- 251
Query: 264 TFSND-----LVKFVVDKLGDEPKKALIFFRWAEE---SGFVKHDESSYNAMASVLGRED 315
FS D +V F +LG + +R +E GF D +YN + L +
Sbjct: 252 GFSPDVLTYNIVMFANFRLGKTDR----LYRLLDEMVKDGF-SPDLYTYNILLHHLATGN 306
Query: 316 CIDRFWKVLDEMRSKGYE---MEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVN 372
+L MR G E + T V L R + K +D + C P V
Sbjct: 307 KPLAALNLLTHMREVGVEPGVIHFTTLVDGLSRAGKLEACKYFMDEM-VKVGCT--PDVV 363
Query: 373 CCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILK 432
C T ++ + +L+ ++ + E G + NS+++ G+ E +LK
Sbjct: 364 CYTVMITGYISGGELEKA--EEMFKEMTEKGQLPNVFTYNSMIRGFCMAGKFKEACSLLK 421
Query: 433 AMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDV 476
ME G + + S + L +AGK EA+E + M G V
Sbjct: 422 EMESRGCNPNFVVYSTLVNNLRNAGKVLEAHEIVKDMVEKGHYV 465
>gi|255561943|ref|XP_002521980.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223538784|gb|EEF40384.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 584
Score = 67.0 bits (162), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 80/382 (20%), Positives = 157/382 (41%), Gaps = 39/382 (10%)
Query: 296 FVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEA 355
+ K D +YNA+ S + + ++ +VLD M+S+G+ ++ T ++G F R + A
Sbjct: 133 YGKPDVFAYNALISGFIKANQLENANRVLDRMKSRGFLPDVVTYNIMIGSFCSRGKLDLA 192
Query: 356 VDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLD--MRLFSKVVRVFRENGNVLTDAML-- 411
++++E + +P+V T L+ ++ +D M+L +++ E + +A++
Sbjct: 193 LEIFEELLKDNCEPTVITYTILIEATILDGGIDVAMKLLDEMLSKGLEPDTLTYNAIIRG 252
Query: 412 -----------------------------NSVLKALISVGRMGECNKILKAMEEGGFIAS 442
N +L+ L+S G+ E K++ M G +
Sbjct: 253 MCKEMMVDKAFELLRSLSSRGCKPDIITYNILLRTLLSRGKWSEGEKLISEMISIGCKPN 312
Query: 443 SNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQ 502
S + L GK +EA + M+ G + LI G C G LD A + +
Sbjct: 313 VVTHSILIGTLCRDGKVEEAVNLLRSMKEKGLKPDAYCYDPLIAGFCREGRLDLATEFLE 372
Query: 503 KMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLV 562
M+ +G + ++ C +A A + V + E P ++Y L L
Sbjct: 373 YMI-SDGCLPDIVNYNTIMAGLCRTGKADQALE-VFEKLDEVGCPPNVSSYNTLFSALWS 430
Query: 563 QRGFKDALSLLCLMKDHGFPP---FVDPFIKYVSKSGTSDDAIAFLKGMTSKRF-PSMSV 618
AL ++ + + G P + I + + G D+AI L M S R+ P++
Sbjct: 431 SGDRYRALEMILKLLNQGIDPDEITYNSLISCLCRDGMVDEAIELLVDMQSGRYRPNVVS 490
Query: 619 VLCLFAAFFQARRHSEAQDLLS 640
+ + R ++A ++L+
Sbjct: 491 YNIILLGLCKVNRANDAIEVLA 512
Score = 52.4 bits (124), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 75/345 (21%), Positives = 146/345 (42%), Gaps = 16/345 (4%)
Query: 324 LDEMRSKGYEMEMETCVKVL-GRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIV 382
L+ M KGY ++ C K++ G F+ RN+ K A + E + KP V L+ +
Sbjct: 92 LECMVDKGYTPDVILCTKLIKGFFNSRNIGK-ATRVMEI-LERYGKPDVFAYNALISGFI 149
Query: 383 VSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIAS 442
+ QL+ ++V+ + G + N ++ + S G++ +I + + + +
Sbjct: 150 KANQLENA--NRVLDRMKSRGFLPDVVTYNIMIGSFCSRGKLDLALEIFEELLKDNCEPT 207
Query: 443 SNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQ 502
+ + G D A + +D M + G + + ++I+G C +DKA + +
Sbjct: 208 VITYTILIEATILDGGIDVAMKLLDEMLSKGLEPDTLTYNAIIRGMCKEMMVDKAFELLR 267
Query: 503 KMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLV 562
+ + G ++L+ T S+ + + K + + KP T+ LI L
Sbjct: 268 SLSSR-GCKPDIITYNILLRTLLSRGKWSEGEKLISEMI-SIGCKPNVVTHSILIGTLCR 325
Query: 563 QRGFKDALSLLCLMKDHGFPP---FVDPFIKYVSKSGTSDDAIAFLKGMTSKR-FPSMSV 618
++A++LL MK+ G P DP I + G D A FL+ M S P +
Sbjct: 326 DGKVEEAVNLLRSMKEKGLKPDAYCYDPLIAGFCREGRLDLATEFLEYMISDGCLPDIVN 385
Query: 619 VLCLFAAFFQARRHSEAQDLLSK-----CPRYVRNHADVLNLLYS 658
+ A + + +A ++ K CP V ++ + + L+S
Sbjct: 386 YNTIMAGLCRTGKADQALEVFEKLDEVGCPPNVSSYNTLFSALWS 430
Score = 48.1 bits (113), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 67/279 (24%), Positives = 113/279 (40%), Gaps = 7/279 (2%)
Query: 283 KALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKV 342
KA R G K D +YN + L K++ EM S G + + T +
Sbjct: 261 KAFELLRSLSSRG-CKPDIITYNILLRTLLSRGKWSEGEKLISEMISIGCKPNVVTHSIL 319
Query: 343 LGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFREN 402
+G V+EAV+L KP C L+ +LD L ++ + +
Sbjct: 320 IGTLCRDGKVEEAVNLLRSMKEKGLKPDAYCYDPLIAGFCREGRLD--LATEFLEYMISD 377
Query: 403 GNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEA 462
G + N+++ L G+ + ++ + ++E G + + + + L S+G + A
Sbjct: 378 GCLPDIVNYNTIMAGLCRTGKADQALEVFEKLDEVGCPPNVSSYNTLFSALWSSGDRYRA 437
Query: 463 NEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSH-AGYAIDLLV 521
E + + G D + + SLI C G +D+A + M + Y I LL
Sbjct: 438 LEMILKLLNQGIDPDEITYNSLISCLCRDGMVDEAIELLVDMQSGRYRPNVVSYNIILL- 496
Query: 522 NTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNL 560
C NRA DA + V + E +P TTY LI+ +
Sbjct: 497 -GLCKVNRANDAIE-VLAAMTEKGCQPNETTYILLIEGI 533
>gi|32489924|emb|CAE05516.1| OSJNBa0038P21.9 [Oryza sativa Japonica Group]
Length = 825
Score = 67.0 bits (162), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 75/346 (21%), Positives = 133/346 (38%), Gaps = 7/346 (2%)
Query: 297 VKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAV 356
V+ + +YN + +V EM S ++ C + + +KEA
Sbjct: 290 VRPNNMTYNCLIHGYSTSGMWKESVRVFKEMSSSLLVPDVGNCNSFMTALCKHGRIKEAR 349
Query: 357 DLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLK 416
D+++ + KP V LL + + + V G V + N+++
Sbjct: 350 DIFDSMVLKGPKPDVISYGALLHGYATAGCIAG--MDNLFNVMVCEGVVPDRHVFNTLIN 407
Query: 417 ALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDV 476
A +G M + + + M + G S + G+ D+A E +HM +G
Sbjct: 408 AYARLGMMDKSLLMFEDMTKQGVNPDIITFSTVISAFCRLGRLDDAMEKFNHMIDTGVPP 467
Query: 477 GDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKF 536
++ LI+G C DL KA + M+ K ++N C + R + K
Sbjct: 468 DTAVYSCLIQGQCNRRDLVKAKELISDMLSKGIPPPCIKFFTSIINNLCKEGRVAEG-KD 526
Query: 537 VHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFV---DPFIKYVS 593
V + + +P T+ L+ + K+A+ LL M+ G P + + +
Sbjct: 527 VVDLIIHTGQRPNLITFNSLVDGYCLVGNMKEAVGLLDSMESVGVEPDIYTYNTLVDGYC 586
Query: 594 KSGTSDDAIAFLKGMTSKRFPSMSVVL-CLFAAFFQARRHSEAQDL 638
K G DDA+ + M KR SV + FQARR A+++
Sbjct: 587 KHGRIDDALTLFRDMLHKRVTLTSVSYNIILHGLFQARRTIVAKEM 632
Score = 40.4 bits (93), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 100/502 (19%), Positives = 198/502 (39%), Gaps = 40/502 (7%)
Query: 177 HGLVQEFWGLVDVMKKKGYGVASHVRNKMTEKFEKEGLESDLEKL------KGIFATGSI 230
HG ++E + D M KG + + G + ++ L +G+ +
Sbjct: 342 HGRIKEARDIFDSMVLKGPKPDVISYGALLHGYATAGCIAGMDNLFNVMVCEGVVPDRHV 401
Query: 231 DNSIEKVASRICKVVRSDIWGDDVERQLRDLNV-TFSNDLVKFV-VDKLGDEPKKALIFF 288
N++ +R+ + +S + +D+ +Q + ++ TFS + F + +L D +K F
Sbjct: 402 FNTLINAYARLGMMDKSLLMFEDMTKQGVNPDIITFSTVISAFCRLGRLDDAMEK----F 457
Query: 289 RWAEESGFVKHDESSYNAM-ASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVK----VL 343
++G V D + Y+ + R D + + +++ +M SKG C+K ++
Sbjct: 458 NHMIDTG-VPPDTAVYSCLIQGQCNRRDLV-KAKELISDMLSKGIP---PPCIKFFTSII 512
Query: 344 GRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQL--DMRLFSKVVRVFRE 401
+ V E D+ + + +P N TF +V L +M+ ++
Sbjct: 513 NNLCKEGRVAEGKDVVDLIIHTGQRP--NLITF--NSLVDGYCLVGNMKEAVGLLDSMES 568
Query: 402 NGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDE 461
G N+++ GR+ + + + M +S + I L A +
Sbjct: 569 VGVEPDIYTYNTLVDGYCKHGRIDDALTLFRDMLHKRVTLTSVSYNIILHGLFQARRTIV 628
Query: 462 ANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAI---D 518
A E M SG V + +++ G C D+A ++EK + + + I +
Sbjct: 629 AKEMFHEMIESGMAVSIHTYATVLGGLCRNNCTDEA----NMLLEKLFSMNVKFDILTFN 684
Query: 519 LLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKD 578
+++ R +A K + + Y L P TY +I NL+ + F+DA +L M+
Sbjct: 685 IVIRAMFKVGRRQEA-KELFAAISTYGLVPTILTYRVMITNLIKEESFEDADNLFSSMEK 743
Query: 579 HGFPP---FVDPFIKYVSKSGTSDDAIAFLKGMTSKR-FPSMSVVLCLFAAFFQARRHSE 634
P ++ I+ + G A +L + K P + L F ++ E
Sbjct: 744 SSCTPDSRILNEIIRMLLNKGEVAKAGNYLSKIDKKGILPEATTTSLLIYLFSVNGKYRE 803
Query: 635 AQDLLSKCPRYVRNHADVLNLL 656
LL + R++R A V N +
Sbjct: 804 YIKLLPEKYRFLREQAAVDNCI 825
>gi|449449677|ref|XP_004142591.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
mitochondrial-like [Cucumis sativus]
Length = 748
Score = 67.0 bits (162), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 72/337 (21%), Positives = 145/337 (43%), Gaps = 16/337 (4%)
Query: 322 KVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKI 381
K DEM SK + T ++ F + V E +L+ ++ KP T L+
Sbjct: 384 KWFDEMLSKKISPDYITYTTLIQGFGQGGKVIEPQNLFHEMISRGLKPDEVTYTTLIDVY 443
Query: 382 VVSKQL--DMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGF 439
+ ++ L +++V++ V A+++ + K G + N++L M + G
Sbjct: 444 CKAGEMVNAFSLHNEMVQMGMTPNIVTYGALIDGLCKH----GELDTANELLDEMRKKGL 499
Query: 440 IASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAAD 499
+ + + + + AG ++A + M ME +G D + ++I +C GD+DKA
Sbjct: 500 QLNVCIYNSMVNGICKAGNIEQAIKLMKEMEVAGIDPDAITYTTVIDAYCRLGDIDKAHK 559
Query: 500 CFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKN 559
Q+M+++ G ++L+N +C D + + + E + P TY L+K
Sbjct: 560 LLQEMLDR-GLQPTVVTFNVLMNGFCMLGMLEDGDRLL-GWMLEKGIVPDAITYNTLMKQ 617
Query: 560 LLVQRGFKDALSLLCLMKDHGFPPFVDPF---IKYVSKSGTSDDAIAFLKGMTSKRF-PS 615
++ + M++ G P + + IK K+ +A K M K + P+
Sbjct: 618 HCIRNSMNTTTKIYKRMRNQGVAPDSNTYNILIKGHCKARNLKEAWFLYKEMIEKGYVPT 677
Query: 616 MSVVLCLFAAFFQARRHSEAQDLLSKCPRYVRNHADV 652
++ L F++ ++ EA++L + +R H V
Sbjct: 678 VTSYNALIKRFYKKKKILEARELFEE----MRGHGLV 710
Score = 52.4 bits (124), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 45/200 (22%), Positives = 82/200 (41%), Gaps = 5/200 (2%)
Query: 412 NSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEA 471
NS++ L +G+ E K+L+ M I + + + + G AN++ D M +
Sbjct: 332 NSIILLLCKIGKSFEAEKVLREMMSQKIIPDNVVYTTLIHGFFKLGHVRTANKWFDEMLS 391
Query: 472 SGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAI 531
+ +LI+G G + + + F +M+ + G L++ YC +
Sbjct: 392 KKISPDYITYTTLIQGFGQGGKVIEPQNLFHEMISR-GLKPDEVTYTTLIDVYCKAGEMV 450
Query: 532 DACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFV---DPF 588
+A +HN + + + P TY LI L A LL M+ G V +
Sbjct: 451 NAFS-LHNEMVQMGMTPNIVTYGALIDGLCKHGELDTANELLDEMRKKGLQLNVCIYNSM 509
Query: 589 IKYVSKSGTSDDAIAFLKGM 608
+ + K+G + AI +K M
Sbjct: 510 VNGICKAGNIEQAIKLMKEM 529
Score = 47.8 bits (112), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 59/330 (17%), Positives = 129/330 (39%), Gaps = 41/330 (12%)
Query: 289 RWAEE--SGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRF 346
+W +E S + D +Y + G+ + + EM S+G + + T ++ +
Sbjct: 384 KWFDEMLSKKISPDYITYTTLIQGFGQGGKVIEPQNLFHEMISRGLKPDEVTYTTLIDVY 443
Query: 347 SERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVL 406
+ + A L+ + P++ L+ + +LD ++++ R+ G L
Sbjct: 444 CKAGEMVNAFSLHNEMVQMGMTPNIVTYGALIDGLCKHGELDTA--NELLDEMRKKGLQL 501
Query: 407 TDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFM 466
+ NS++ + G + + K++K ME G + + + G D+A++ +
Sbjct: 502 NVCIYNSMVNGICKAGNIEQAIKLMKEMEVAGIDPDAITYTTVIDAYCRLGDIDKAHKLL 561
Query: 467 DHMEASGS--------------------DVGDKM--WV-------------SLIKGHCVA 491
M G + GD++ W+ +L+K HC+
Sbjct: 562 QEMLDRGLQPTVVTFNVLMNGFCMLGMLEDGDRLLGWMLEKGIVPDAITYNTLMKQHCIR 621
Query: 492 GDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHT 551
++ +++M +G + ++L+ +C K R + F++ + E P T
Sbjct: 622 NSMNTTTKIYKRM-RNQGVAPDSNTYNILIKGHC-KARNLKEAWFLYKEMIEKGYVPTVT 679
Query: 552 TYEELIKNLLVQRGFKDALSLLCLMKDHGF 581
+Y LIK ++ +A L M+ HG
Sbjct: 680 SYNALIKRFYKKKKILEARELFEEMRGHGL 709
>gi|356513567|ref|XP_003525484.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74850,
chloroplastic-like [Glycine max]
Length = 857
Score = 67.0 bits (162), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 77/359 (21%), Positives = 138/359 (38%), Gaps = 9/359 (2%)
Query: 282 KKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVK 341
+++L F++ + + K +E + M ++LGRE +D+ +V DEM S G + +
Sbjct: 115 QRSLRLFKYMQRQIWCKPNEHIHTIMITLLGREGLLDKCREVFDEMPSNGVVRTVYSYTA 174
Query: 342 VLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRE 401
++ + +++L + PS+ ++ LD + R
Sbjct: 175 IINAYGRNGQFHASLELLNGMKQERVSPSILTYNTVINA-CARGGLDWEGLLGLFAEMRH 233
Query: 402 NGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDE 461
G N++L A G E + + M E G + N S + + ++
Sbjct: 234 EGIQPDVITYNTLLGACAHRGLGDEAEMVFRTMNESGIVPDINTYSYLVQTFGKLNRLEK 293
Query: 462 ANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLV 521
+E + ME G+ + L++ + G + +A F++M + G +L+
Sbjct: 294 VSELLREMECGGNLPDITSYNVLLEAYAELGSIKEAMGVFRQM-QAAGCVANAATYSVLL 352
Query: 522 NTYCSKNRAIDACK-FVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHG 580
N Y R D F+ V D P TY LI+ FK+ ++L M +
Sbjct: 353 NLYGKHGRYDDVRDLFLEMKVSNTD--PDAGTYNILIQVFGEGGYFKEVVTLFHDMAEEN 410
Query: 581 FPPFVDPF---IKYVSKSGTSDDAIAFLKGMTSKR-FPSMSVVLCLFAAFFQARRHSEA 635
P + + I K G +DA L M K PS + AF QA + EA
Sbjct: 411 VEPNMQTYEGLIFACGKGGLYEDAKKILLHMNEKGVVPSSKAYTGVIEAFGQAALYEEA 469
>gi|242086476|ref|XP_002443663.1| hypothetical protein SORBIDRAFT_08g023090 [Sorghum bicolor]
gi|241944356|gb|EES17501.1| hypothetical protein SORBIDRAFT_08g023090 [Sorghum bicolor]
Length = 853
Score = 67.0 bits (162), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 86/356 (24%), Positives = 146/356 (41%), Gaps = 30/356 (8%)
Query: 250 WGDDVERQLRDLNVTF----SNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYN 305
WG E L +L+ +N ++K + D AL FF+W + KHD +Y
Sbjct: 310 WGPMTEHVLDNLHCKIDAFQANQVLKLLHDH-----TVALGFFQWLKRQPGFKHDGHTYT 364
Query: 306 AMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMAC 365
M +LG+ K+LDEM + + T +++ + N +KEAV ++E
Sbjct: 365 TMIGILGQARQFGVLKKLLDEMSRAHCKPTVVTYNRIIHAYGRANYLKEAVKVFEEMQEA 424
Query: 366 KNKPS-VNCCTFL-LRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGR 423
+P V CT + + + M L+ ++ V AM+N + K G+
Sbjct: 425 GYEPDRVTYCTLIDIHAKAGYLDIAMDLYGRMQEVGLSPDTFTYSAMVNCLGKG----GQ 480
Query: 424 MGECNKILKAMEEGGFIASSNMKS---KIAFRLSSAGKKDEANEFMDHMEASGSDVGDKM 480
+ K+ M E G + N+ + IA + + ++ + D M+ +G DK+
Sbjct: 481 LAAAYKLFCEMIENG--CTPNLVTYNIMIALQAKARNYENVVKLYKD-MQVAGFRP-DKI 536
Query: 481 WVSLIK---GHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFV 537
S++ GHC G LD+A F +M Y LLV+ + K +D
Sbjct: 537 TYSIVMEVLGHC--GHLDEAEAVFIEMRRDWAPDEPVYG--LLVDLW-GKAGNVDKALGW 591
Query: 538 HNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPFIKYVS 593
+ + + L+P T L+ L F+DA +L M G P V + +S
Sbjct: 592 YQAMLQDGLQPNVPTCNSLLSAFLKMNRFQDAYIVLQNMLAQGLVPSVQTYTLLLS 647
>gi|357142780|ref|XP_003572691.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04130,
mitochondrial-like [Brachypodium distachyon]
Length = 501
Score = 67.0 bits (162), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 82/382 (21%), Positives = 149/382 (39%), Gaps = 43/382 (11%)
Query: 266 SNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLD 325
++++V ++ K GD+ K AL F+WA+ SG KH + + M +LG+ ID+ W +L
Sbjct: 82 TSNIVDGLLSKFGDDWKSALGLFQWAQSSGNYKHTAYACSRMIDLLGKMRQIDQMWDLLS 141
Query: 326 EMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYE-----------------FAMACKNK 368
+M +G + +E + R + K+AV L++ CK K
Sbjct: 142 DMHCRGL-VTVEAAATSIRRLAGARRWKDAVLLFDKLGDMGLERNTETMNVLLDALCKEK 200
Query: 369 -----------------PSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAML 411
P + ++++D +++ + + G +
Sbjct: 201 KVEVARKVFLVLSPHIQPDAYTFNIFVHGWCSARRIDEAMWT--IEEMKAQGFPPSVITY 258
Query: 412 NSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEA 471
+VL+A +IL +M G + + I L+ +EA M++
Sbjct: 259 TTVLEAYCKQHNFRMVYEILDSMSSEGCHPNVITYTMIMTSLAKCHMFEEALSVSHRMKS 318
Query: 472 SGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAI 531
SG + SLI AG L +A+ FQ + G + + +++ +C K+
Sbjct: 319 SGCKPDTLFYNSLINLLGKAGHLSEASQVFQVEMPMNGVPRSLATYNTMISVFCYKDLDE 378
Query: 532 DACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLC--LMKDHGFPPFVDPF- 588
DA + + KP TY L++ L +RG D + L LM H +D +
Sbjct: 379 DALSVLKE-METQSCKPDLQTYRPLLRLFLSRRGQDDTVRNLLNELMNKHSLGLDLDTYT 437
Query: 589 --IKYVSKSGTSDDAIAFLKGM 608
I + + G +D A M
Sbjct: 438 LLIHGLCRVGETDWAYRLFDEM 459
>gi|15238505|ref|NP_201359.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75180383|sp|Q9LSL9.1|PP445_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g65560
gi|8978284|dbj|BAA98175.1| unnamed protein product [Arabidopsis thaliana]
gi|110737310|dbj|BAF00601.1| hypothetical protein [Arabidopsis thaliana]
gi|332010688|gb|AED98071.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 915
Score = 67.0 bits (162), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 72/318 (22%), Positives = 138/318 (43%), Gaps = 11/318 (3%)
Query: 278 GDEPK-KALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEM 336
G E K +AL + EE+G +K + +Y + L + ++ ++L +M KG +
Sbjct: 335 GSERKSEALNLVKEMEETG-IKPNIHTYTVLIDSLCSQCKFEKARELLGQMLEKGLMPNV 393
Query: 337 ETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSK-QLDMRLFSKV 395
T ++ + +R M+++AVD+ E + K P+ L++ S M + +K+
Sbjct: 394 ITYNALINGYCKRGMIEDAVDVVELMESRKLSPNTRTYNELIKGYCKSNVHKAMGVLNKM 453
Query: 396 VRVFRENGNVLTDAML-NSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLS 454
+ VL D + NS++ G ++L M + G + + + L
Sbjct: 454 LE-----RKVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDQWTYTSMIDSLC 508
Query: 455 SAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAG 514
+ + +EA + D +E G + M+ +LI G+C AG +D+A +KM+ K ++
Sbjct: 509 KSKRVEEACDLFDSLEQKGVNPNVVMYTALIDGYCKAGKVDEAHLMLEKMLSKNCLPNS- 567
Query: 515 YAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLC 574
+ L++ C+ + +A V+ L+P +T LI LL F A S
Sbjct: 568 LTFNALIHGLCADGKLKEATLLEEKMVK-IGLQPTVSTDTILIHRLLKDGDFDHAYSRFQ 626
Query: 575 LMKDHGFPPFVDPFIKYV 592
M G P + ++
Sbjct: 627 QMLSSGTKPDAHTYTTFI 644
Score = 62.4 bits (150), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 88/373 (23%), Positives = 150/373 (40%), Gaps = 33/373 (8%)
Query: 280 EPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKV-------LDEMRSKGY 332
+PK AL F W ++ KH SY ++ ++L + +K+ D + Y
Sbjct: 102 DPKTALNFSHWISQNPRYKHSVYSYASLLTLLINNGYVGVVFKIRLLMIKSCDSVGDALY 161
Query: 333 EMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLF 392
+++ C K+ ER +K Y+ + C N + F L + KQ+ M +
Sbjct: 162 VLDL--CRKM--NKDERFELK-----YKLIIGCYNTLLNSLARFGL--VDEMKQVYMEML 210
Query: 393 SKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFR 452
V N+ T N ++ +G + E N+ + + E G + +
Sbjct: 211 EDKV-----CPNIYT---YNKMVNGYCKLGNVEEANQYVSKIVEAGLDPDFFTYTSLIMG 262
Query: 453 LSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSH 512
D A + + M G + + LI G CVA +D+A D F KM + E
Sbjct: 263 YCQRKDLDSAFKVFNEMPLKGCRRNEVAYTHLIHGLCVARRIDEAMDLFVKMKDDECFPT 322
Query: 513 AGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSL 572
+L+ + C R +A V + E +KP TY LI +L Q F+ A L
Sbjct: 323 V-RTYTVLIKSLCGSERKSEALNLVKE-MEETGIKPNIHTYTVLIDSLCSQCKFEKAREL 380
Query: 573 LCLMKDHGFPPFV---DPFIKYVSKSGTSDDAIAFLKGMTSKRF-PSMSVVLCLFAAFFQ 628
L M + G P V + I K G +DA+ ++ M S++ P+ L + +
Sbjct: 381 LGQMLEKGLMPNVITYNALINGYCKRGMIEDAVDVVELMESRKLSPNTRTYNELIKGYCK 440
Query: 629 ARRHSEAQDLLSK 641
+ H +A +L+K
Sbjct: 441 SNVH-KAMGVLNK 452
>gi|115471383|ref|NP_001059290.1| Os07g0249100 [Oryza sativa Japonica Group]
gi|33146978|dbj|BAC80051.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|50508482|dbj|BAD30659.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|113610826|dbj|BAF21204.1| Os07g0249100 [Oryza sativa Japonica Group]
gi|215767773|dbj|BAH00002.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 882
Score = 67.0 bits (162), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 77/323 (23%), Positives = 139/323 (43%), Gaps = 19/323 (5%)
Query: 322 KVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKI 381
KVL+EM GY + + C + + +AV K +P+ + T L+ +
Sbjct: 130 KVLEEMAVLGYGLPNQACAHLAAALVRARRLDDAVLAVAVMRRLKFRPAFSAYTVLIGAL 189
Query: 382 VVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIA 441
+++ + L +++R +E G + + ++++AL R G+ L ++E +
Sbjct: 190 AEARRPERAL--ELLRQMQEVGYEVGVHLFTTLVRAL---AREGQVADALALVDE---VK 241
Query: 442 SSNMKSKIAFR------LSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLD 495
S ++ I AG D A +F ++A G D + S+I C AG L
Sbjct: 242 GSCLEPDIVLYNVCIDCFGKAGNVDMAWKFFHELKAQGLKPDDVSYTSMIWVLCKAGRLG 301
Query: 496 KAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEE 555
+A + F +M E E + YA + ++ Y S R DA K + +RE P ++
Sbjct: 302 EAEELFAQM-EAERSVPCAYAYNTMIMGYGSAGRFEDAYKLLER-LRERGCIPSVVSFNS 359
Query: 556 LIKNLLVQRGFKDALSLLCLMKDHGFP--PFVDPFIKYVSKSGTSDDAIAFLKGMT-SKR 612
++ L +R +ALSL +MK P + I + G ++A L M +
Sbjct: 360 ILTCLGKKRKVDEALSLFEVMKKDAEPNSSTYNIIIDMLCLGGRVEEAYRILDEMEHASL 419
Query: 613 FPSMSVVLCLFAAFFQARRHSEA 635
FP++ V + +AR+ EA
Sbjct: 420 FPNLLTVNIMVDRLCKARKLEEA 442
Score = 47.8 bits (112), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 50/213 (23%), Positives = 84/213 (39%), Gaps = 18/213 (8%)
Query: 387 LDMRLFSKVVRVFRENGNV----------------LTDAMLNSVLKALISVGRMGECNKI 430
LD R ++ VV F ++G V T A +++ L + R+ E +
Sbjct: 596 LDARAYNAVVDGFCKSGKVHKAYEILEEMKEKCVQPTVATYGAIVDGLAKIDRLDEAYML 655
Query: 431 LKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCV 490
+ + G + + S + G+ DEA ++ M G W SL+
Sbjct: 656 FEEAKSKGIELNVVLYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLLDALVK 715
Query: 491 AGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWH 550
A ++++A CFQ M E + + Y +L+N C + A F + +++ L P
Sbjct: 716 AEEINEALVCFQSMKEMKCPPNT-YTYSILINGLCRVQKYNKAFVFWQD-MQKQGLVPNV 773
Query: 551 TTYEELIKNLLVQRGFKDALSLLCLMKDHGFPP 583
TY +I L DA SL K +G P
Sbjct: 774 VTYTTMISGLAKVGNITDAYSLFERFKANGGIP 806
Score = 46.2 bits (108), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 68/326 (20%), Positives = 130/326 (39%), Gaps = 36/326 (11%)
Query: 303 SYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFA 362
+YN M G + +K+L+ +R +G + + +L ++ V EA+ L+E
Sbjct: 321 AYNTMIMGYGSAGRFEDAYKLLERLRERGCIPSVVSFNSILTCLGKKRKVDEALSLFE-V 379
Query: 363 MACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFREN------GNVLTDAMLNSVLK 416
M +P+ + ++ + + +++ + R+ E N+LT +N ++
Sbjct: 380 MKKDAEPNSSTYNIIIDMLCLGGRVE-----EAYRILDEMEHASLFPNLLT---VNIMVD 431
Query: 417 ALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDV 476
L ++ E KI ++ + G + L G+ DEA + M +G +
Sbjct: 432 RLCKARKLEEAYKIFESASQRGCNPDCVTYCSLIDGLGKKGQVDEAYRLFEKMLDAGHNA 491
Query: 477 GDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDL-LVNTYCS---KNRAID 532
++ SLI+ + G + F++++ + G DL L+NTY K ++
Sbjct: 492 NPVVYTSLIRNFFIHGRKEDGHKIFKELIRR------GCKPDLTLLNTYMDCVFKAGEVE 545
Query: 533 ACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFP-------PFV 585
+ + +R Y P +Y LI L ++ ++ MK GF V
Sbjct: 546 KGRMIFEDIRSYGFLPDVRSYSILIHGLTKAGQARETSNIFHAMKQQGFALDARAYNAVV 605
Query: 586 DPFIKYVSKSGTSDDAIAFLKGMTSK 611
D F KSG A L+ M K
Sbjct: 606 DGF----CKSGKVHKAYEILEEMKEK 627
Score = 45.4 bits (106), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 88/418 (21%), Positives = 158/418 (37%), Gaps = 86/418 (20%)
Query: 256 RQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESG-FVKHDESSYNAMASVLGRE 314
RQ++++ L +V L E + A E G ++ D YN G+
Sbjct: 203 RQMQEVGYEVGVHLFTTLVRALAREGQVADALALVDEVKGSCLEPDIVLYNVCIDCFGKA 262
Query: 315 DCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCC 374
+D WK E++++G + + + ++ + + EA +L+ A ++ P C
Sbjct: 263 GNVDMAWKFFHELKAQGLKPDDVSYTSMIWVLCKAGRLGEAEELFAQMEAERSVP----C 318
Query: 375 TFLLRKIVVSKQLDMRL--FSKVVRVFRENGNVLTDAMLNSVLKAL---------ISV-- 421
+ +++ R K++ RE G + + NS+L L +S+
Sbjct: 319 AYAYNTMIMGYGSAGRFEDAYKLLERLRERGCIPSVVSFNSILTCLGKKRKVDEALSLFE 378
Query: 422 -----------------------GRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGK 458
GR+ E +IL ME + + + RL A K
Sbjct: 379 VMKKDAEPNSSTYNIIIDMLCLGGRVEEAYRILDEMEHASLFPNLLTVNIMVDRLCKARK 438
Query: 459 KDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAID 518
+EA + + G + + SLI G G +D+A F+KM++ AG+ +
Sbjct: 439 LEEAYKIFESASQRGCNPDCVTYCSLIDGLGKKGQVDEAYRLFEKMLD------AGHNAN 492
Query: 519 LLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLL----- 573
+V T +N F+H R+ D H ++ELI+ RG K L+LL
Sbjct: 493 PVVYTSLIRNF------FIHG--RKED---GHKIFKELIR-----RGCKPDLTLLNTYMD 536
Query: 574 CLMK---------------DHGFPPFVDPF---IKYVSKSGTSDDAIAFLKGMTSKRF 613
C+ K +GF P V + I ++K+G + + M + F
Sbjct: 537 CVFKAGEVEKGRMIFEDIRSYGFLPDVRSYSILIHGLTKAGQARETSNIFHAMKQQGF 594
Score = 41.6 bits (96), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 78/385 (20%), Positives = 158/385 (41%), Gaps = 34/385 (8%)
Query: 166 TYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRNKMTEKFEKEGLESDLEKL---- 221
TY ++ +G G V E + L + M G+ V + F G + D K+
Sbjct: 460 TYCSLIDGLGKKGQVDEAYRLFEKMLDAGHNANPVVYTSLIRNFFIHGRKEDGHKIFKEL 519
Query: 222 --KGIFATGSIDNSIEKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGD 279
+G ++ N+ + +V + + +D+ R L S ++ + K G
Sbjct: 520 IRRGCKPDLTLLNTYMDCVFKAGEVEKGRMIFEDI-RSYGFLPDVRSYSILIHGLTKAGQ 578
Query: 280 EPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETC 339
+ + IF ++ GF D +YNA+ + + + +++L+EM+ K + + T
Sbjct: 579 ARETSNIFHAMKQQ-GFAL-DARAYNAVVDGFCKSGKVHKAYEILEEMKEKCVQPTVATY 636
Query: 340 VKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVF 399
++ ++ + + EA L+E A K+K L ++ S +D F KV R+
Sbjct: 637 GAIVDGLAKIDRLDEAYMLFEEA---KSK------GIELNVVLYSSLIDG--FGKVGRI- 684
Query: 400 RENGNVLTDAML-----------NSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSK 448
+ ++ + M+ NS+L AL+ + E ++M+E ++ S
Sbjct: 685 -DEAYLILEEMMKKGLTPNVYTWNSLLDALVKAEEINEALVCFQSMKEMKCPPNTYTYSI 743
Query: 449 IAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKE 508
+ L K ++A F M+ G + ++I G G++ A F++
Sbjct: 744 LINGLCRVQKYNKAFVFWQDMQKQGLVPNVVTYTTMISGLAKVGNITDAYSLFERFKANG 803
Query: 509 GTSHAGYAIDLLVNTYCSKNRAIDA 533
G A + + L+ + NRA++A
Sbjct: 804 GIPDAA-SFNALIEGMSNANRAMEA 827
>gi|227463004|gb|ACP39954.1| pentatricopeptide repeat protein [Gossypium hirsutum]
gi|227463006|gb|ACP39955.1| pentatricopeptide repeat protein [Gossypium hirsutum]
Length = 547
Score = 67.0 bits (162), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 77/339 (22%), Positives = 145/339 (42%), Gaps = 6/339 (1%)
Query: 231 DNSIEKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRW 290
+ +E+ A+RIC ++ S G ++ L D ++ S LV V+ +L + AL FF W
Sbjct: 88 ETKLEQDAARICTLL-STHSGSHADKLLEDASIKVSPSLVVEVLKRLSNAGVIALSFFTW 146
Query: 291 AEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERN 350
AE+ K++ SYNA+ LG+ +++EM+S+ + +T + R +
Sbjct: 147 AEKQKGFKYNTESYNALIEALGKIKQFKLIRSLVNEMKSRKL-LNKDTFALISRRHARAR 205
Query: 351 MVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAM 410
V+EA++ +E K + LL + S+ ++ +KV ++ V
Sbjct: 206 KVEEAIEAFERMEEFGFKLETSDFNRLLDTLCKSRHVEKA--NKVFDKMKKRRFVPDIKS 263
Query: 411 LNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHME 470
+L+ + +++ M+ GF + A K D A E ME
Sbjct: 264 YTILLEGWGKEHNLLRLDEVYLEMKYDGFEPDVVTYGILISAYCKAKKYDAAIELFHEME 323
Query: 471 ASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRA 530
A ++ +LI G L +A + F++ + G + + LV YC R
Sbjct: 324 AKNCKPTPHVYCTLINGLGSEKRLSEALEFFERF-KSCGFTPEAPTYNSLVGAYCWSMRI 382
Query: 531 IDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDA 569
DA + + +R++ P TY+ ++ +L+ R +A
Sbjct: 383 DDAFQVIDE-MRKHSAGPNSRTYDIILHHLIKARRTNEA 420
>gi|255660880|gb|ACU25609.1| pentatricopeptide repeat-containing protein [Verbena bonariensis]
Length = 484
Score = 67.0 bits (162), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 79/364 (21%), Positives = 148/364 (40%), Gaps = 48/364 (13%)
Query: 258 LRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCI 317
+R+L +F ++LV V+ + AL FFRW E S +H+ ++ + +LGR +
Sbjct: 3 IRNLVPSFDHELVYNVLHS-SKTSEHALQFFRWVERSNLFEHNRETHLKIIEILGRASKL 61
Query: 318 DRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFL 377
+ +L +M KG E + + V ++ + + +V+E+V
Sbjct: 62 NHARCILLDMPKKGLEWDEDMWVMMIDSYGKEGIVQESV--------------------- 100
Query: 378 LRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEG 437
++F K+ E G T N + K ++ GR + M
Sbjct: 101 ------------KMFQKM----EELGVERTIKSYNXLFKVILRRGRYMMAKRYFNKMLSE 144
Query: 438 GFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKA 497
G + + + + + +GK + AN F + M++ + ++I G+ +++A
Sbjct: 145 GIEPTRHTFNVMIWGFFLSGKVETANRFFEDMKSREISPDVVTYNTMINGYYRVKKMEEA 204
Query: 498 ADCFQKMVEKEGTSHAGYAI--DLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEE 555
F VE +G + + L+ Y S ++ DA + V ++ + +KP TY
Sbjct: 205 EKYF---VEMKGRNIEPTVVTYTTLIKGYVSVDQVDDALRLVEE-MKGFGIKPNAITYST 260
Query: 556 LIKNLLVQRGFKDALSLLCLMKDHGFPPFVDP-FIKYVS---KSGTSDDAIAFLKGMTSK 611
L+ L +A +L M D P + F++ +S KSG D A LK M
Sbjct: 261 LLPGLCNAEKMSEARVILKEMMDKYLAPTDNSIFMRLISSHCKSGNLDAAADVLKAMIRL 320
Query: 612 RFPS 615
P+
Sbjct: 321 SVPT 324
Score = 49.3 bits (116), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 106/498 (21%), Positives = 195/498 (39%), Gaps = 81/498 (16%)
Query: 128 FTHEMVLKVLKNLESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLV 187
F HE+V VL + ++S + A +FF WV + +T+ ++ I+G + ++
Sbjct: 10 FDHELVYNVLHSSKTS-EHALQFFRWVERSNLFEHNRETHLKIIEILGRASKLNHARCIL 68
Query: 188 DVMKKKGYGVASHVRNKMTEKFEKEGLESDLEKLKGIFATGSIDNSIEKVASRICKVVRS 247
M KKG + M + + KEG+ + K+ +E++
Sbjct: 69 LDMPKKGLEWDEDMWVMMIDSYGKEGIVQESVKMF---------QKMEELG--------- 110
Query: 248 DIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAM 307
VER ++ N F V+ + G F + E ++ ++N M
Sbjct: 111 ------VERTIKSYNXLFK------VILRRGRYMMAKRYFNKMLSEG--IEPTRHTFNVM 156
Query: 308 A---SVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMA 364
+ G+ + +RF+ ++M+S+ ++ T ++ + ++EA + Y M
Sbjct: 157 IWGFFLSGKVETANRFF---EDMKSREISPDVVTYNTMINGYYRVKKMEEA-EKYFVEMK 212
Query: 365 CKN-KPSVNCCTFLLRKIVVSKQLD--MRLFSKVVRVFRENGNVLTDAMLNSVLKALISV 421
+N +P+V T L++ V Q+D +RL ++ + F N +T +++L L +
Sbjct: 213 GRNIEPTVVTYTTLIKGYVSVDQVDDALRLVEEM-KGFGIKPNAIT---YSTLLPGLCNA 268
Query: 422 GRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSA----GKKDEANEFMDHMEASGSDVG 477
+M E ILK M + + N I RL S+ G D A + + M
Sbjct: 269 EKMSEARVILKEMMDKYLAPTDN---SIFMRLISSHCKSGNLDAAADVLKAMIRLSVPTE 325
Query: 478 DKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFV 537
+ LI+ C G DKA K++EK+ + L + Y
Sbjct: 326 AGHYGXLIENFCKXGQYDKAVKLLDKLIEKDIILRPQSTLHLEPSAY------------- 372
Query: 538 HNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPFIKYVSKSGT 597
N + EY E + L + G +D +L L++ H S+ G+
Sbjct: 373 -NPMIEYLCNNGQAXKAETLVRQLXKLGVQDPTALNTLIRGH-------------SQEGS 418
Query: 598 SDDAIAFLKGMTSKRFPS 615
D A LK M ++ S
Sbjct: 419 PDSAFELLKIMLRRKVBS 436
>gi|297819626|ref|XP_002877696.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297323534|gb|EFH53955.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 1188
Score = 67.0 bits (162), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 79/334 (23%), Positives = 141/334 (42%), Gaps = 11/334 (3%)
Query: 254 VERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGR 313
+E L + + L+ V+ + GD FF WA + H +M +L +
Sbjct: 87 LELSLNESGIDLRPGLIVRVLSRCGDAGNLGYRFFLWATKQPGYCHSYEVCKSMVKILSK 146
Query: 314 EDCIDRFWKVLDEMRSKGYEM-EMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVN 372
W +++EMR + E+ E E V ++ RF+ NMVK+AV++ + +P
Sbjct: 147 MRQFGAVWGLIEEMRKENPELIEPELFVVLIRRFASANMVKKAVEVLDEMPKYGFEPDEY 206
Query: 373 CCTFLLRKIVVSKQLDMRLFSKVVRVFREN--GNVLTDAMLNSVLKALISVGRMGECNKI 430
LL + K ++ SKV RE N+ S+L G++ E ++
Sbjct: 207 VFGCLLDALC--KNGSVKDASKVFEDMREKIPPNL---RYFTSLLYGWCREGKLMEAKEV 261
Query: 431 LKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHC- 489
L M+E G + + + + AGK +A + ++ M G + + LI+ C
Sbjct: 262 LVQMKEAGLEPDIVVFTNLLSGYAHAGKMADAYDLLNDMRKRGYEPNANCYTVLIQALCR 321
Query: 490 VAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPW 549
+D+A F +M E+ G L++ +C K ID V + +R+ + P
Sbjct: 322 TEKRMDEAMRVFVEM-ERYGCEADIVTYTALISGFC-KWGMIDKGYSVLDDMRKKGVMPS 379
Query: 550 HTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPP 583
TY +++ + F++ L L+ MK G P
Sbjct: 380 QVTYMQILVAHEKKEQFEECLELIEKMKQIGCHP 413
>gi|224089372|ref|XP_002308709.1| predicted protein [Populus trichocarpa]
gi|222854685|gb|EEE92232.1| predicted protein [Populus trichocarpa]
Length = 1115
Score = 67.0 bits (162), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 75/329 (22%), Positives = 138/329 (41%), Gaps = 14/329 (4%)
Query: 286 IFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGR 345
+F ++ +E G VK YN + ++ W + +EM+S G + T ++
Sbjct: 776 VFVKFTKELG-VKPTLKVYNLLIDGFLEVHNVEVAWNLFEEMKSAGCAPDTFTYNSLIDA 834
Query: 346 FSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLD--MRLFSKVVRVFRENG 403
+ + E DLY+ + KP+ ++ +V S +LD M L+ +V +G
Sbjct: 835 HGKSGKINELFDLYDEMLTRGCKPNTITYNMVISNLVKSNRLDKAMDLYYNLV-----SG 889
Query: 404 NV-LTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEA 462
+ T ++ L+ GR+ + +++ M G +S + + + G D A
Sbjct: 890 DFSPTPCTFGPLIDGLLKSGRLDDAHEMFDGMVHYGCRPNSAIYNILVNGYGKLGHVDTA 949
Query: 463 NEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVN 522
EF M G K + L+ C+AG +D A F+K+ ++ G A +L++N
Sbjct: 950 CEFFKRMVKEGIRPDLKSYTILVDILCIAGRVDDALHYFEKL-KQAGLDPDLVAYNLMIN 1008
Query: 523 TYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFP 582
R +A H ++ + P TY LI NL + ++A + ++ G
Sbjct: 1009 GLGRSQRTEEALSLFHE-MQNRGIVPDLYTYNSLILNLGIVGMIEEAGKIYEELQFIGLK 1067
Query: 583 PFV---DPFIKYVSKSGTSDDAIAFLKGM 608
P V + I+ + SG S+ A K M
Sbjct: 1068 PNVFTYNALIRGYTLSGNSELAYGIYKKM 1096
Score = 60.1 bits (144), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 70/304 (23%), Positives = 129/304 (42%), Gaps = 14/304 (4%)
Query: 324 LDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVV 383
L++MR G+ + + ++ + KEA+++Y ++ KPS+ TF +
Sbjct: 182 LEKMREAGFVLNAYSYNGLIHFLLQSGFCKEALEVYRRMVSEGLKPSLK--TFSALMVAS 239
Query: 384 SKQLDMRLFSKVVRVFRENG---NVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFI 440
K+ +++ ++ G N+ T + ++ L G++ E +I+K M++ G
Sbjct: 240 GKRRNIKTVMGLLEEMESMGLRPNIYTYTI---CIRVLGRDGKIDEAYRIMKRMDDDGCG 296
Query: 441 ASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADC 500
+ + L +A K D+A M++S +V+L+ G LDK
Sbjct: 297 PDVVTYTVLIDALCTARKLDDAMCLFTKMKSSSHKPDKVTYVTLLDKFSDCGHLDKVEKI 356
Query: 501 FQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNL 560
+ +M E +G + +LVN C R +A + + +R+ + P TY LI L
Sbjct: 357 WTEM-EADGYAPDVVTFTILVNALCKAGRINEAFDLL-DTMRKQGVLPNLHTYNTLISGL 414
Query: 561 LVQRGFKDALSLLCLMKDHGFPPFVDPF---IKYVSKSGTSDDAIAFLKGMTSKRFPSMS 617
L DAL L M+ G P + I Y KSG A+ + M ++ +
Sbjct: 415 LRANRLDDALDLFSNMESLGVEPTAYTYILLIDYHGKSGHPGKALETFEKMKARGIAP-N 473
Query: 618 VVLC 621
+V C
Sbjct: 474 IVAC 477
Score = 59.3 bits (142), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 113/523 (21%), Positives = 208/523 (39%), Gaps = 61/523 (11%)
Query: 133 VLKVLKNLESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLVDVMKK 192
VL VL ++ S P A +F V E + +++T N ML I+ VH V++ + D+M++
Sbjct: 94 VLGVLHSI-SDPIHALFYFKSVGELPNVVHTTETCNHMLEILRVHRRVEDMAFVFDLMQR 152
Query: 193 KGYGVASHVRNKMT---EKFEKEGLESDLEKLKGIFATGSIDNSIEK-------VASRIC 242
+ + +V + F + GL L+ + G + N+ + S C
Sbjct: 153 QI--IRRNVDTYLIIFKSLFIRGGLRQAPSALEKMREAGFVLNAYSYNGLIHFLLQSGFC 210
Query: 243 KVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDES 302
K +++ V L+ TFS +V K ++ ES ++ +
Sbjct: 211 KEAL-EVYRRMVSEGLKPSLKTFS----ALMVASGKRRNIKTVMGLLEEMESMGLRPNIY 265
Query: 303 SYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFA 362
+Y VLGR+ ID ++++ M G ++ T ++ + +A+ L+
Sbjct: 266 TYTICIRVLGRDGKIDEAYRIMKRMDDDGCGPDVVTYTVLIDALCTARKLDDAMCLFTKM 325
Query: 363 MACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRE---NGNVLTDAMLNSVLKALI 419
+ +KP LL K LD KV +++ E +G ++ AL
Sbjct: 326 KSSSHKPDKVTYVTLLDKFSDCGHLD-----KVEKIWTEMEADGYAPDVVTFTILVNALC 380
Query: 420 SVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDK 479
GR+ E +L M + G + + + + + L A + D+A + +ME+ G +
Sbjct: 381 KAGRINEAFDLLDTMRKQGVLPNLHTYNTLISGLLRANRLDDALDLFSNMESLGVEPTAY 440
Query: 480 MWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHN 539
++ LI H +G KA + F+KM + G + A + + + R +A K + N
Sbjct: 441 TYILLIDYHGKSGHPGKALETFEKM-KARGIAPNIVACNASLYSLAEMGRLGEA-KAMFN 498
Query: 540 CVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPFIKYVSKSGTSD 599
++ L P TY ++K C SK G D
Sbjct: 499 ELKSSGLAPDSVTYNMMMK---------------C-----------------YSKVGQVD 526
Query: 600 DAIAFLKGMTSKRF-PSMSVVLCLFAAFFQARRHSEAQDLLSK 641
+AI L M+ + P + V+ L ++A R EA + +
Sbjct: 527 EAIKLLSEMSKVQCEPDVIVINSLIDTLYKAGRVEEAWQMFCR 569
Score = 45.8 bits (107), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 78/383 (20%), Positives = 153/383 (39%), Gaps = 25/383 (6%)
Query: 205 MTEKFEKEGLESDLEKLKGIFATGSIDNSIEKVASRICKVVRSDIWGDDVERQLRDLNVT 264
+ E+ E GL ++ D I++ A RI K + D G DV VT
Sbjct: 251 LLEEMESMGLRPNIYTYTICIRVLGRDGKIDE-AYRIMKRMDDDGCGPDV--------VT 301
Query: 265 FSNDLVKFVVDKLGDEPK--KALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWK 322
++ ++D L K A+ F + S K D+ +Y + +D+ K
Sbjct: 302 YT-----VLIDALCTARKLDDAMCLFTKMKSSSH-KPDKVTYVTLLDKFSDCGHLDKVEK 355
Query: 323 VLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIV 382
+ EM + GY ++ T ++ + + EA DL + P+++ L+ ++
Sbjct: 356 IWTEMEADGYAPDVVTFTILVNALCKAGRINEAFDLLDTMRKQGVLPNLHTYNTLISGLL 415
Query: 383 VSKQLD--MRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFI 440
+ +LD + LFS + + E +++ K+ G G+ + + M+ G
Sbjct: 416 RANRLDDALDLFSNMESLGVEPTAYTYILLIDYHGKS----GHPGKALETFEKMKARGIA 471
Query: 441 ASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADC 500
+ + + L+ G+ EA + +++SG + ++K + G +D+A
Sbjct: 472 PNIVACNASLYSLAEMGRLGEAKAMFNELKSSGLAPDSVTYNMMMKCYSKVGQVDEAIKL 531
Query: 501 FQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNL 560
+M + + I+ L++T R +A + + E +L P TY L+ L
Sbjct: 532 LSEMSKVQCEPDV-IVINSLIDTLYKAGRVEEAWQMFCR-MEEMNLAPTVVTYNILLAGL 589
Query: 561 LVQRGFKDALSLLCLMKDHGFPP 583
+ + A+ L M HG P
Sbjct: 590 GKEGQIQKAVQLFESMNGHGCSP 612
>gi|255660910|gb|ACU25624.1| pentatricopeptide repeat-containing protein [Mulguraea scoparia]
Length = 484
Score = 67.0 bits (162), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 85/391 (21%), Positives = 159/391 (40%), Gaps = 49/391 (12%)
Query: 258 LRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCI 317
+R+L +F ++LV V+ + AL FFRW E S +H+ ++ + +LGR +
Sbjct: 3 IRNLXPSFDHELVYNVLHS-AKTSEHALQFFRWVERSNLFEHNRETHLKIIEILGRASKL 61
Query: 318 DRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFL 377
+ +L +M KG E + + V ++ + ++ +V+E+V
Sbjct: 62 NHARCILLDMPKKGLEWDEDMWVMMIDSYGKQGIVQESV--------------------- 100
Query: 378 LRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEG 437
+LF K+ E G T +++ K ++ GR + M
Sbjct: 101 ------------KLFQKM----EELGVERTIKSYDALFKVILRRGRYMMAKRYFNKMLSE 144
Query: 438 GFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKA 497
G + + + +GK + AN F + M++ + ++I G+ ++A
Sbjct: 145 GIEPTRXTFXVLIWGFFLSGKVETANRFFEDMKSREISPDVVTYNTMINGYYRVKKXEEA 204
Query: 498 ADCFQKMVEKEGTSHAGYAIDL--LVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEE 555
F VE +G + + L+ Y S ++ DA + V ++ + +KP Y
Sbjct: 205 EKYF---VEMKGRNIEPTVVTYTTLIKGYVSVDQVDDALRLVEE-MKGFGIKPNAIXYST 260
Query: 556 LIKNLLVQRGFKDALSLLCLMKDHGFPPFVDP-FIKYVS---KSGTSDDAIAFLKGMTSK 611
L+ L +A S+L M D P + F++ ++ KSG D A LK M
Sbjct: 261 LLPGLCNAEKMSEARSILKEMMDKYLAPTDNSIFMRLITSQCKSGNLDAASDVLKAMIRL 320
Query: 612 RFPSMSVVL-CLFAAFFQARRHSEAQDLLSK 641
P+ + L F +A ++ +A LL K
Sbjct: 321 SVPTEAGHYGVLIENFCKAGQYDQAVKLLDK 351
Score = 47.0 bits (110), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 102/494 (20%), Positives = 189/494 (38%), Gaps = 73/494 (14%)
Query: 128 FTHEMVLKVLKNLESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLV 187
F HE+V VL + ++S + A +FF WV + +T+ ++ I+G + ++
Sbjct: 10 FDHELVYNVLHSAKTS-EHALQFFRWVERSNLFEHNRETHLKIIEILGRASKLNHARCIL 68
Query: 188 DVMKKKGYGVASHVRNKMTEKFEKEGLESDLEKLKGIFATGSIDNSIEKVASRICKVVRS 247
M KKG + M + + K+G+ + KL ++ +I+ + ++R
Sbjct: 69 LDMPKKGLEWDEDMWVMMIDSYGKQGIVQESVKLFQKMEELGVERTIKSYDALFKVILRR 128
Query: 248 DIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKK-ALIFFRWAEESGFVKHDESSYNA 306
+ R N S G EP + W GF
Sbjct: 129 GRYM----MAKRYFNKMLSE----------GIEPTRXTFXVLIW----GFF--------- 161
Query: 307 MASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACK 366
+ G+ + +RF+ ++M+S+ ++ T ++ + +EA + Y M +
Sbjct: 162 ---LSGKVETANRFF---EDMKSREISPDVVTYNTMINGYYRVKKXEEA-EKYFVEMKGR 214
Query: 367 N-KPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMG 425
N +P+V T L++ V Q+D L ++V + G +++L L + +M
Sbjct: 215 NIEPTVVTYTTLIKGYVSVDQVDDAL--RLVEEMKGFGIKPNAIXYSTLLPGLCNAEKMS 272
Query: 426 ECNKILKAMEEGGFIASSNMKSKIAFRLSSA----GKKDEANEFMDHMEASGSDVGDKMW 481
E ILK M + + N I RL ++ G D A++ + M +
Sbjct: 273 EARSILKEMMDKYLAPTDN---SIFMRLITSQCKSGNLDAASDVLKAMIRLSVPTEAGHY 329
Query: 482 VSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCV 541
LI+ C AG D+A K++EK+ + L + Y N +
Sbjct: 330 GVLIENFCKAGQYDQAVKLLDKLIEKDIILRPQSTLHLEPSAY--------------NPM 375
Query: 542 REYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPFIKYVSKSGTSDDA 601
EY E + L++ G +D +L L++ H S+ G+ D A
Sbjct: 376 IEYLCNNGQAAKAETLVRQLLKWGVQDPTALNTLIRGH-------------SQEGSPDSA 422
Query: 602 IAFLKGMTSKRFPS 615
LK M ++ S
Sbjct: 423 FELLKIMLRRKVDS 436
>gi|255660878|gb|ACU25608.1| pentatricopeptide repeat-containing protein [Verbena hispida]
Length = 484
Score = 66.6 bits (161), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 85/391 (21%), Positives = 160/391 (40%), Gaps = 49/391 (12%)
Query: 258 LRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCI 317
+R+L +F ++LV V+ + AL FFRW E S +H+ ++ + +LGR +
Sbjct: 3 IRNLVPSFDHELVYNVLHS-SKTSEHALQFFRWVERSNLFEHNRETHLKIIEILGRASKL 61
Query: 318 DRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFL 377
+ +L +M KG E + + V ++ + + +V+E+V
Sbjct: 62 NHARCILLDMPKKGLEWDEDMWVMMIDSYGKEGIVQESV--------------------- 100
Query: 378 LRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEG 437
++F K+ E G T N++ K ++ GR + M
Sbjct: 101 ------------KMFQKM----EELGVERTIKSYNALFKVILRRGRYMMAKRYFNKMLSE 144
Query: 438 GFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKA 497
G + + + + + +GK + AN F + M++ + ++I G+ +++A
Sbjct: 145 GIEPTRHTFNVMIWGFFLSGKVETANRFFEDMKSREISPDVVTYNTMINGYYRVKKMEEA 204
Query: 498 ADCFQKMVEKEGTSHAGYAI--DLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEE 555
F VE +G + + L+ Y S ++ D + V ++ + +KP TY
Sbjct: 205 EKYF---VEMKGRNIEPTVVTYTTLIKGYVSVDQVDDXLRLVEE-MKGFGIKPNAITYST 260
Query: 556 LIKNLLVQRGFKDALSLLCLMKDHGFPPFVDP-FIKYVS---KSGTSDDAIAFLKGMTSK 611
L+ L +A +L M D P + F++ +S KSG D A LK M
Sbjct: 261 LLPGLCNAEKMSEARVILKEMMDKYLAPTDNSIFMRLISSHCKSGNLDAAADVLKAMIRL 320
Query: 612 RFPSMSVVL-CLFAAFFQARRHSEAQDLLSK 641
P+ + L F +A ++ +A LL K
Sbjct: 321 SVPTEAGHYGXLIENFCKAGQYDKAVKLLDK 351
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 107/498 (21%), Positives = 196/498 (39%), Gaps = 81/498 (16%)
Query: 128 FTHEMVLKVLKNLESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLV 187
F HE+V VL + ++S + A +FF WV + +T+ ++ I+G + ++
Sbjct: 10 FDHELVYNVLHSSKTS-EHALQFFRWVERSNLFEHNRETHLKIIEILGRASKLNHARCIL 68
Query: 188 DVMKKKGYGVASHVRNKMTEKFEKEGLESDLEKLKGIFATGSIDNSIEKVASRICKVVRS 247
M KKG + M + + KEG+ + K+ +E++
Sbjct: 69 LDMPKKGLEWDEDMWVMMIDSYGKEGIVQESVKMF---------QKMEELG--------- 110
Query: 248 DIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAM 307
VER ++ N F V+ + G F + E ++ ++N M
Sbjct: 111 ------VERTIKSYNALFK------VILRRGRYMMAKRYFNKMLSEG--IEPTRHTFNVM 156
Query: 308 A---SVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMA 364
+ G+ + +RF+ ++M+S+ ++ T ++ + ++EA + Y M
Sbjct: 157 IWGFFLSGKVETANRFF---EDMKSREISPDVVTYNTMINGYYRVKKMEEA-EKYFVEMK 212
Query: 365 CKN-KPSVNCCTFLLRKIVVSKQLD--MRLFSKVVRVFRENGNVLTDAMLNSVLKALISV 421
+N +P+V T L++ V Q+D +RL ++ + F N +T +++L L +
Sbjct: 213 GRNIEPTVVTYTTLIKGYVSVDQVDDXLRLVEEM-KGFGIKPNAIT---YSTLLPGLCNA 268
Query: 422 GRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSA----GKKDEANEFMDHMEASGSDVG 477
+M E ILK M + + N I RL S+ G D A + + M
Sbjct: 269 EKMSEARVILKEMMDKYLAPTDN---SIFMRLISSHCKSGNLDAAADVLKAMIRLSVPTE 325
Query: 478 DKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFV 537
+ LI+ C AG DKA K++EK+ + L + Y
Sbjct: 326 AGHYGXLIENFCKAGQYDKAVKLLDKLIEKDIILRPQSTLHLEPSAY------------- 372
Query: 538 HNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPFIKYVSKSGT 597
N + EY E + L + G +D +L L++ H S+ G+
Sbjct: 373 -NPMIEYLCNNGQAXKAETLVRQLXKLGVQDPTALNTLIRGH-------------SQEGS 418
Query: 598 SDDAIAFLKGMTSKRFPS 615
D A LK M ++ S
Sbjct: 419 PDSAFELLKIMLRRKVBS 436
>gi|224130786|ref|XP_002328376.1| predicted protein [Populus trichocarpa]
gi|222838091|gb|EEE76456.1| predicted protein [Populus trichocarpa]
Length = 599
Score = 66.6 bits (161), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 85/384 (22%), Positives = 156/384 (40%), Gaps = 43/384 (11%)
Query: 297 VKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAV 356
V H+ S N + + L R + + VL +M G + + T ++ +KEAV
Sbjct: 123 VTHNVYSLNILINCLCRLNHVVFAISVLGKMFKLGIQPDAITFNTLINGRCIEGEIKEAV 182
Query: 357 DLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENG------------- 403
L+ + ++P V + ++ + S M L +++R E G
Sbjct: 183 GLFNEMVRRGHQPDVISYSTVINGLCKSGNTSMAL--QLLRKMEEKGCKPNLVAYTTIID 240
Query: 404 -----NVLTDAM-----------------LNSVLKALISVGRMGECNKILKAMEEGGFIA 441
++ DAM +++L S+G + E + M +
Sbjct: 241 SLCKDTLVNDAMDLLSEMVDRGIPPDVVTYSTILHGFCSLGHLNEATILFNEMVGRNVMP 300
Query: 442 SSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCF 501
++ + + L G EA + M G++ + +L+ G+C+ +D+A
Sbjct: 301 NTVTFTILVDGLCKEGMVSEARCVFEAMTKKGAEPNAYTYNALMDGYCLNNQMDEAQKVL 360
Query: 502 QKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLL 561
MV+K G + ++ ++L+N YC K R +D K + + E +L P TY L++ L
Sbjct: 361 DIMVDK-GCAPVVHSYNILINGYC-KRRRLDEAKSLLVEMSEKELTPDTVTYSTLMQGLC 418
Query: 562 VQRGFKDALSLLCLMKDHGFPPFV---DPFIKYVSKSGTSDDAIAFLKGMT-SKRFPSMS 617
++AL+L M G P + + + K G D+A+ LK M SK P +
Sbjct: 419 QVGRPQEALNLFKEMCSSGLLPDLMTYSTLLDGLCKHGHLDEALKLLKSMQESKIEPDIV 478
Query: 618 VVLCLFAAFFQARRHSEAQDLLSK 641
+ L F A + A++L SK
Sbjct: 479 LYNILIEGMFIAGKLEVAKELFSK 502
Score = 53.5 bits (127), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 97/461 (21%), Positives = 173/461 (37%), Gaps = 55/461 (11%)
Query: 166 TYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRNKMTEKFEKEGLES-DLEKLKGI 224
T+N ++ + G ++E GL + M ++G+ + + K G S L+ L+ +
Sbjct: 164 TFNTLINGRCIEGEIKEAVGLFNEMVRRGHQPDVISYSTVINGLCKSGNTSMALQLLRKM 223
Query: 225 FATGSIDNSI--EKVASRICKVV----RSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLG 278
G N + + +CK D+ + V+R + VT+S L F LG
Sbjct: 224 EEKGCKPNLVAYTTIIDSLCKDTLVNDAMDLLSEMVDRGIPPDVVTYSTILHGFC--SLG 281
Query: 279 DEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMET 338
+ ++F + V + ++ + L +E + V + M KG E T
Sbjct: 282 HLNEATILFNEMVGRN--VMPNTVTFTILVDGLCKEGMVSEARCVFEAMTKKGAEPNAYT 339
Query: 339 CVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRV 398
++ + N + EA + + + P V+ L+ ++LD +K + V
Sbjct: 340 YNALMDGYCLNNQMDEAQKVLDIMVDKGCAPVVHSYNILINGYCKRRRLDE---AKSLLV 396
Query: 399 FRENGNVLTDAMLNSVL-KALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAG 457
+ D + S L + L VGR E + K M G + S + L G
Sbjct: 397 EMSEKELTPDTVTYSTLMQGLCQVGRPQEALNLFKEMCSSGLLPDLMTYSTLLDGLCKHG 456
Query: 458 KKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAI 517
DEA + + M+ S + ++ LI+G +AG L+ A + F K+
Sbjct: 457 HLDEALKLLKSMQESKIEPDIVLYNILIEGMFIAGKLEVAKELFSKLFAD---------- 506
Query: 518 DLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMK 577
++P TY +IK LL + +A L M+
Sbjct: 507 ---------------------------GIQPTIRTYTIMIKGLLKEGLSDEAYELFRKME 539
Query: 578 DHGFPP---FVDPFIKYVSKSGTSDDAIAFLKGMTSKRFPS 615
D GF P + I+ ++ S AI + M KRF +
Sbjct: 540 DDGFLPNSCSYNVIIQGFLQNQDSSTAIRLIDEMVGKRFSA 580
>gi|222628658|gb|EEE60790.1| hypothetical protein OsJ_14375 [Oryza sativa Japonica Group]
Length = 754
Score = 66.6 bits (161), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 75/346 (21%), Positives = 133/346 (38%), Gaps = 7/346 (2%)
Query: 297 VKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAV 356
V+ + +YN + +V EM S ++ C + + +KEA
Sbjct: 219 VRPNNMTYNCLIHGYSTSGMWKESVRVFKEMSSSLLVPDVGNCNSFMTALCKHGRIKEAR 278
Query: 357 DLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLK 416
D+++ + KP V LL + + + V G V + N+++
Sbjct: 279 DIFDSMVLKGPKPDVISYGALLHGYATAGCIAG--MDNLFNVMVCEGVVPDRHVFNTLIN 336
Query: 417 ALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDV 476
A +G M + + + M + G S + G+ D+A E +HM +G
Sbjct: 337 AYARLGMMDKSLLMFEDMTKQGVNPDIITFSTVISAFCRLGRLDDAMEKFNHMIDTGVPP 396
Query: 477 GDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKF 536
++ LI+G C DL KA + M+ K ++N C + R + K
Sbjct: 397 DTAVYSCLIQGQCNRRDLVKAKELISDMLSKGIPPPCIKFFTSIINNLCKEGRVAEG-KD 455
Query: 537 VHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFV---DPFIKYVS 593
V + + +P T+ L+ + K+A+ LL M+ G P + + +
Sbjct: 456 VVDLIIHTGQRPNLITFNSLVDGYCLVGNMKEAVGLLDSMESVGVEPDIYTYNTLVDGYC 515
Query: 594 KSGTSDDAIAFLKGMTSKRFPSMSVVL-CLFAAFFQARRHSEAQDL 638
K G DDA+ + M KR SV + FQARR A+++
Sbjct: 516 KHGRIDDALTLFRDMLHKRVTLTSVSYNIILHGLFQARRTIVAKEM 561
Score = 40.0 bits (92), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 125/624 (20%), Positives = 245/624 (39%), Gaps = 70/624 (11%)
Query: 83 PMICSYSSEPAMEQKESDFTVVSDIFYKFSD----VNDISKQLELSGVVFTHEM-----V 133
P + SY++ KE + D+FYK + N ++ ++G+ T EM V
Sbjct: 151 PDVFSYNALIDGFSKEGEVDKAHDLFYKMEEQGIMPNVVTYSSLINGLCKTKEMDKAERV 210
Query: 134 LKVLKNLESSPDEARRFFNWVLE--------KESERL-SSKTYNLMLRIVG--------- 175
L+ + P+ +N ++ KES R+ + +L++ VG
Sbjct: 211 LRQMVGAGVRPNNMT--YNCLIHGYSTSGMWKESVRVFKEMSSSLLVPDVGNCNSFMTAL 268
Query: 176 -VHGLVQEFWGLVDVMKKKGYGVASHVRNKMTEKFEKEGLESDLEKL------KGIFATG 228
HG ++E + D M KG + + G + ++ L +G+
Sbjct: 269 CKHGRIKEARDIFDSMVLKGPKPDVISYGALLHGYATAGCIAGMDNLFNVMVCEGVVPDR 328
Query: 229 SIDNSIEKVASRICKVVRSDIWGDDVERQLRDLNV-TFSNDLVKFV-VDKLGDEPKKALI 286
+ N++ +R+ + +S + +D+ +Q + ++ TFS + F + +L D +K
Sbjct: 329 HVFNTLINAYARLGMMDKSLLMFEDMTKQGVNPDIITFSTVISAFCRLGRLDDAMEK--- 385
Query: 287 FFRWAEESGFVKHDESSYNAM-ASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVK---- 341
F ++G V D + Y+ + R D + + +++ +M SKG C+K
Sbjct: 386 -FNHMIDTG-VPPDTAVYSCLIQGQCNRRDLV-KAKELISDMLSKGIP---PPCIKFFTS 439
Query: 342 VLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQL--DMRLFSKVVRVF 399
++ + V E D+ + + +P N TF +V L +M+ ++
Sbjct: 440 IINNLCKEGRVAEGKDVVDLIIHTGQRP--NLITF--NSLVDGYCLVGNMKEAVGLLDSM 495
Query: 400 RENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKK 459
G N+++ GR+ + + + M +S + I L A +
Sbjct: 496 ESVGVEPDIYTYNTLVDGYCKHGRIDDALTLFRDMLHKRVTLTSVSYNIILHGLFQARRT 555
Query: 460 DEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAI-- 517
A E M SG V + +++ G C D+A ++EK + + + I
Sbjct: 556 IVAKEMFHEMIESGMAVSIHTYATVLGGLCRNNCTDEA----NMLLEKLFSMNVKFDILT 611
Query: 518 -DLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLM 576
++++ R +A K + + Y L P TY +I NL+ + F+DA +L M
Sbjct: 612 FNIVIRAMFKVGRRQEA-KELFAAISTYGLVPTILTYRVMITNLIKEESFEDADNLFSSM 670
Query: 577 KDHGFPP---FVDPFIKYVSKSGTSDDAIAFLKGMTSKR-FPSMSVVLCLFAAFFQARRH 632
+ P ++ I+ + G A +L + K P + L F ++
Sbjct: 671 EKSSCTPDSRILNEIIRMLLNKGEVAKAGNYLSKIDKKGILPEATTTSLLIYLFSVNGKY 730
Query: 633 SEAQDLLSKCPRYVRNHADVLNLL 656
E LL + R++R A V N +
Sbjct: 731 REYIKLLPEKYRFLREQAAVDNCI 754
>gi|255660888|gb|ACU25613.1| pentatricopeptide repeat-containing protein [Verbena rigida]
Length = 481
Score = 66.6 bits (161), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 79/364 (21%), Positives = 148/364 (40%), Gaps = 48/364 (13%)
Query: 258 LRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCI 317
+R+L +F ++LV V+ + AL FFRW E S +H+ ++ + +LGR +
Sbjct: 3 IRNLVPSFDHELVYNVLHS-SKTSEHALQFFRWVERSNLFEHNRETHLKIIEILGRASKL 61
Query: 318 DRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFL 377
+ +L +M KG E + + V ++ + + +V+E+V
Sbjct: 62 NHARCILLDMPKKGLEWDEDMWVMMIDSYGKEGIVQESV--------------------- 100
Query: 378 LRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEG 437
++F K+ E G T N + K ++ GR + M
Sbjct: 101 ------------KMFQKM----EELGVERTIKSYNXLFKVILRRGRYMMAKRYFNKMLSE 144
Query: 438 GFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKA 497
G + + + + + +GK + AN F + M++ + ++I G+ +++A
Sbjct: 145 GIEPTRHTFNVMIWGFFLSGKVETANRFFEDMKSREISPDVVTYNTMINGYYRVKKMEEA 204
Query: 498 ADCFQKMVEKEGTSHAGYAI--DLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEE 555
F VE +G + + L+ Y S ++ DA + V ++ + +KP TY
Sbjct: 205 EKYF---VEMKGRNIEPTVVTYTTLIKGYVSVDQVDDALRLVEE-MKGFGIKPNAITYST 260
Query: 556 LIKNLLVQRGFKDALSLLCLMKDHGFPPFVDP-FIKYVS---KSGTSDDAIAFLKGMTSK 611
L+ L +A +L M D P + F++ +S KSG D A LK M
Sbjct: 261 LLPGLCNAEKMSEARVILKEMMDKYLAPTDNSIFMRLISSHCKSGNLDAAADVLKAMIRL 320
Query: 612 RFPS 615
P+
Sbjct: 321 SVPT 324
Score = 48.5 bits (114), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 106/498 (21%), Positives = 195/498 (39%), Gaps = 81/498 (16%)
Query: 128 FTHEMVLKVLKNLESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLV 187
F HE+V VL + ++S + A +FF WV + +T+ ++ I+G + ++
Sbjct: 10 FDHELVYNVLHSSKTS-EHALQFFRWVERSNLFEHNRETHLKIIEILGRASKLNHARCIL 68
Query: 188 DVMKKKGYGVASHVRNKMTEKFEKEGLESDLEKLKGIFATGSIDNSIEKVASRICKVVRS 247
M KKG + M + + KEG+ + K+ +E++
Sbjct: 69 LDMPKKGLEWDEDMWVMMIDSYGKEGIVQESVKMF---------QKMEELG--------- 110
Query: 248 DIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAM 307
VER ++ N F V+ + G F + E ++ ++N M
Sbjct: 111 ------VERTIKSYNXLFK------VILRRGRYMMAKRYFNKMLSEG--IEPTRHTFNVM 156
Query: 308 A---SVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMA 364
+ G+ + +RF+ ++M+S+ ++ T ++ + ++EA + Y M
Sbjct: 157 IWGFFLSGKVETANRFF---EDMKSREISPDVVTYNTMINGYYRVKKMEEA-EKYFVEMK 212
Query: 365 CKN-KPSVNCCTFLLRKIVVSKQLD--MRLFSKVVRVFRENGNVLTDAMLNSVLKALISV 421
+N +P+V T L++ V Q+D +RL ++ + F N +T +++L L +
Sbjct: 213 GRNIEPTVVTYTTLIKGYVSVDQVDDALRLVEEM-KGFGIKPNAIT---YSTLLPGLCNA 268
Query: 422 GRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSA----GKKDEANEFMDHMEASGSDVG 477
+M E ILK M + + N I RL S+ G D A + + M
Sbjct: 269 EKMSEARVILKEMMDKYLAPTDN---SIFMRLISSHCKSGNLDAAADVLKAMIRLSVPTE 325
Query: 478 DKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFV 537
+ LI+ C G DKA K++EK+ + L + Y
Sbjct: 326 AGHYGXLIENFCKXGQYDKAVKLLDKLIEKDIILRPQSTLHLEPSAY------------- 372
Query: 538 HNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPFIKYVSKSGT 597
N + EY E + L + G +D +L L++ H S+ G+
Sbjct: 373 -NPMIEYLCNNGQXXKAETLVRQLXKLGVQDXTALNTLIRGH-------------SQEGS 418
Query: 598 SDDAIAFLKGMTSKRFPS 615
D A LK M ++ S
Sbjct: 419 PDSAFELLKIMLRRKVDS 436
>gi|302758218|ref|XP_002962532.1| hypothetical protein SELMODRAFT_404389 [Selaginella moellendorffii]
gi|300169393|gb|EFJ35995.1| hypothetical protein SELMODRAFT_404389 [Selaginella moellendorffii]
Length = 1031
Score = 66.6 bits (161), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 91/428 (21%), Positives = 159/428 (37%), Gaps = 51/428 (11%)
Query: 251 GDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASV 310
G ++ +L T +V V+ +L D P+ A++FF WA + GF KH + N
Sbjct: 77 GSNIRERLEQWRGTLQPAVVSRVLQRLKD-PQTAIVFFVWAGDRGF-KHSTFTRNCFLQT 134
Query: 311 LGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPS 370
L DR + + M GY + T V+ + N + +A + + A KP
Sbjct: 135 LLENGSSDRIPAMFERMLDAGYAPDSYTYHLVIKSLCQMNQIDKAFTMLDKAKVRGFKPE 194
Query: 371 VNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAML------------------- 411
V+ T L R + +L L ++ R + +A++
Sbjct: 195 VSVYTILTRAFCKTGRLKDAL--EIFRNIPSPDAIAYNAIIHGHCRKNDCDGALEFLKEM 252
Query: 412 ------------NSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKK 459
N ++ L + + +++L M + G + + I L AGK
Sbjct: 253 NERKVAPDVFTYNILIDGLCKASKTDKASEMLHEMVDRGVTPDTVTFNSIMDGLCKAGKF 312
Query: 460 DEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAID- 518
+ A+ + M + +LI G C ++D+A D + V +G+ D
Sbjct: 313 ERAHSLLAVMAERNCRPSCCTYNTLISGLCKQQNVDRAKDLVDEFVS------SGFVPDV 366
Query: 519 ----LLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLC 574
+L + C + R +A + V + P TY LI L + A LL
Sbjct: 367 VTYSILADGLCKRGRIDEAFELVKE-MSGKGCTPNLVTYNTLIDGLCKASKTEKAYELLE 425
Query: 575 LMKDHGFPPFVDPF---IKYVSKSGTSDDAIAFLKGMTSKRF-PSMSVVLCLFAAFFQAR 630
+ GF P V + + + K G D A+ ++GM + PS+ L +
Sbjct: 426 SLVSSGFVPDVVTYTIIVDGLCKEGRLDKALKMVEGMLKRGCTPSVITYTALMEGLCRTG 485
Query: 631 RHSEAQDL 638
R EA +
Sbjct: 486 RVDEAHHI 493
Score = 63.9 bits (154), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 106/485 (21%), Positives = 189/485 (38%), Gaps = 30/485 (6%)
Query: 154 VLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRNKMTEKFEKEG 213
V+ + + R S TYN ++ + V LVD G+ + + + K G
Sbjct: 321 VMAERNCRPSCCTYNTLISGLCKQQNVDRAKDLVDEFVSSGFVPDVVTYSILADGLCKRG 380
Query: 214 -LESDLEKLKGIFATGSIDNSI--EKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLV 270
++ E +K + G N + + +CK +++ + +E + + F D+V
Sbjct: 381 RIDEAFELVKEMSGKGCTPNLVTYNTLIDGLCKASKTEKAYELLESLV---SSGFVPDVV 437
Query: 271 KF--VVDKLGDEPK--KALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDE 326
+ +VD L E + KAL + G +Y A+ L R +D + E
Sbjct: 438 TYTIIVDGLCKEGRLDKALKMVEGMLKRGCTP-SVITYTALMEGLCRTGRVDEAHHIFKE 496
Query: 327 MRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQ 386
M SK + V ++ + + + KEA + + + P ++ L+ +
Sbjct: 497 MVSKDCTADALAYVSLVNGYCKSSRTKEAQKVVD---GIRGTPYIDVYNALMDGYCKEGR 553
Query: 387 LDMRLFSKVVRVFRE---NGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASS 443
LD ++ VF + G V N V+ L G++ E L++M G +
Sbjct: 554 LD-----EIPNVFEDMACRGCVPNIKTYNIVMDGLCKHGKVDEAFPFLESMHSAGCVPDV 608
Query: 444 NMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQK 503
+ I L A K EA + +D M +G + +L+ C D A +
Sbjct: 609 VSYNIIIDGLFKASKPKEARQVLDQMIQAGIPPDAVTYNTLMAQFCKEERFDDAVGILKN 668
Query: 504 MVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQ 563
M+ K G + L++ NR DA + +H +R + TTY +I L +
Sbjct: 669 MI-KAGVDPDNVTYNTLISGLSQTNRLGDAYELMHEMLRNGCVVSACTTYNTIIDRLCKE 727
Query: 564 RGFKDALSLLCLMKDHGFPPFV---DPFIKYVSKSGTSDDAIAFLKGMTSKR----FPSM 616
K AL L+ M HG + FI + K G D+A + L M + R + ++
Sbjct: 728 GCLKQALLLMDHMTGHGVEANTVTYNIFIDRLCKEGRLDEASSLLSEMDTLRDEVSYTTV 787
Query: 617 SVVLC 621
+ LC
Sbjct: 788 IIGLC 792
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 110/520 (21%), Positives = 210/520 (40%), Gaps = 88/520 (16%)
Query: 164 SKTYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRNKMTEKFEKEG-LESDLEKLK 222
S TY+L+++ + + + + ++D K +G+ V +T F K G L+ LE +
Sbjct: 160 SYTYHLVIKSLCQMNQIDKAFTMLDKAKVRGFKPEVSVYTILTRAFCKTGRLKDALEIFR 219
Query: 223 GIFATGSI---------------DNSIE--------KVASRI----------CKVVRSD- 248
I + +I D ++E KVA + CK ++D
Sbjct: 220 NIPSPDAIAYNAIIHGHCRKNDCDGALEFLKEMNERKVAPDVFTYNILIDGLCKASKTDK 279
Query: 249 ---IWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYN 305
+ + V+R + VTF++ + K G + + AE + + +YN
Sbjct: 280 ASEMLHEMVDRGVTPDTVTFNSIMDGLC--KAGKFERAHSLLAVMAERN--CRPSCCTYN 335
Query: 306 AMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMAC 365
+ S L ++ +DR ++DE S G+ ++ T + +R + EA +L + M+
Sbjct: 336 TLISGLCKQQNVDRAKDLVDEFVSSGFVPDVVTYSILADGLCKRGRIDEAFELVK-EMSG 394
Query: 366 KNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMG 425
K CT N++T N+++ L +
Sbjct: 395 KG------CT---------------------------PNLVT---YNTLIDGLCKASKTE 418
Query: 426 ECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLI 485
+ ++L+++ GF+ + I L G+ D+A + ++ M G + +L+
Sbjct: 419 KAYELLESLVSSGFVPDVVTYTIIVDGLCKEGRLDKALKMVEGMLKRGCTPSVITYTALM 478
Query: 486 KGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYD 545
+G C G +D+A F++MV K+ T+ A A LVN YC +R +A K V +R
Sbjct: 479 EGLCRTGRVDEAHHIFKEMVSKDCTADA-LAYVSLVNGYCKSSRTKEAQKVVDG-IRG-- 534
Query: 546 LKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPF---IKYVSKSGTSDDAI 602
P+ Y L+ + + ++ M G P + + + + K G D+A
Sbjct: 535 -TPYIDVYNALMDGYCKEGRLDEIPNVFEDMACRGCVPNIKTYNIVMDGLCKHGKVDEAF 593
Query: 603 AFLKGMTSKR-FPSMSVVLCLFAAFFQARRHSEAQDLLSK 641
FL+ M S P + + F+A + EA+ +L +
Sbjct: 594 PFLESMHSAGCVPDVVSYNIIIDGLFKASKPKEARQVLDQ 633
Score = 47.8 bits (112), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 77/354 (21%), Positives = 140/354 (39%), Gaps = 20/354 (5%)
Query: 165 KTYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRNKMTEKFEKEGLESDLEK-LKG 223
KTYN+++ + HG V E + ++ M G N + + K + + L
Sbjct: 574 KTYNIVMDGLCKHGKVDEAFPFLESMHSAGCVPDVVSYNIIIDGLFKASKPKEARQVLDQ 633
Query: 224 IFATGSIDNSI--EKVASRICKVVRSD----IWGDDVERQLRDLNVTFSNDLVKFV--VD 275
+ G +++ + ++ CK R D I + ++ + NVT+ N L+ + +
Sbjct: 634 MIQAGIPPDAVTYNTLMAQFCKEERFDDAVGILKNMIKAGVDPDNVTY-NTLISGLSQTN 692
Query: 276 KLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEME 335
+LGD A +G V ++YN + L +E C+ + ++D M G E
Sbjct: 693 RLGD----AYELMHEMLRNGCVVSACTTYNTIIDRLCKEGCLKQALLLMDHMTGHGVEAN 748
Query: 336 METCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKV 395
T + R + + EA L +++ S T ++ + ++QLD SK+
Sbjct: 749 TVTYNIFIDRLCKEGRLDEASSLLSEMDTLRDEVSY---TTVIIGLCKAEQLDRA--SKL 803
Query: 396 VR-VFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLS 454
R + G +T N ++ A R+ E +L M + G S + + L
Sbjct: 804 AREMVAVKGLCITSHTFNLLIDAFTKTKRLDEALTLLGLMVQRGCSPSVITYNMVITCLC 863
Query: 455 SAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKE 508
K D+A E D M G + LI G C G +A ++M +
Sbjct: 864 KLDKVDKAWELFDEMAVRGIVASSVSYTVLIYGLCGQGRGKEALQVLEEMASSD 917
Score = 46.2 bits (108), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 63/294 (21%), Positives = 123/294 (41%), Gaps = 14/294 (4%)
Query: 272 FVVDKLGDEPK--KALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRS 329
V+D L K +A F +G V D SYN + L + +VLD+M
Sbjct: 578 IVMDGLCKHGKVDEAFPFLESMHSAGCVP-DVVSYNIIIDGLFKASKPKEARQVLDQMIQ 636
Query: 330 KGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLD- 388
G + T ++ +F + +AV + + + P L+ + + +L
Sbjct: 637 AGIPPDAVTYNTLMAQFCKEERFDDAVGILKNMIKAGVDPDNVTYNTLISGLSQTNRLGD 696
Query: 389 -MRLFSKVVRVFRENGNVLTDAML-NSVLKALISVGRMGECNKILKAMEEGGFIASSNMK 446
L +++R NG V++ N+++ L G + + ++ M G A++
Sbjct: 697 AYELMHEMLR----NGCVVSACTTYNTIIDRLCKEGCLKQALLLMDHMTGHGVEANTVTY 752
Query: 447 SKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVE 506
+ RL G+ DEA+ + M+ +V + ++I G C A LD+A+ ++MV
Sbjct: 753 NIFIDRLCKEGRLDEASSLLSEMDTLRDEVS---YTTVIIGLCKAEQLDRASKLAREMVA 809
Query: 507 KEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNL 560
+G + +LL++ + +K + +D + + + P TY +I L
Sbjct: 810 VKGLCITSHTFNLLIDAF-TKTKRLDEALTLLGLMVQRGCSPSVITYNMVITCL 862
>gi|225457536|ref|XP_002272226.1| PREDICTED: pentatricopeptide repeat-containing protein At5g42310,
mitochondrial [Vitis vinifera]
gi|297745544|emb|CBI40709.3| unnamed protein product [Vitis vinifera]
Length = 695
Score = 66.6 bits (161), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 113/534 (21%), Positives = 215/534 (40%), Gaps = 63/534 (11%)
Query: 121 LELSGVVFTHEMVLKVLKNLESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLV 180
LE + F++E++ +L + + + + + L + + L+ TYN ++ + +
Sbjct: 144 LERHNLCFSYELLYSILIH---ALGRSEKLYEAFLLSQRQTLTPLTYNALIGACARNDDL 200
Query: 181 QEFWGLVDVMKKKGYGVASHVRNKMTEKFEKEGLESDLEKLKGIFATGSIDNSIEKVASR 240
++ L+ M++ G+ + V + +SD L+ I+A D IE
Sbjct: 201 EKALNLMSRMRRDGFP-SDFVNYSFIIQSLTRTNKSDSSMLQKIYAEIESDK-IELDGQL 258
Query: 241 ICKVVRSDIWGDDVERQLRDLNVTFSNDL------VKFVVDKLGDEPK--KALIFFRWAE 292
+ ++ DV R + L + N L + V+ LG+ + +A F +
Sbjct: 259 LNDIIVGFAKSGDVNRAMSFLAMVQGNGLSPKTATLVAVITALGNAGRTEEAEAIFEELK 318
Query: 293 ESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMV 352
E G + + YNA+ + + ++ EM G+ + T ++ ++
Sbjct: 319 EGGLMPRTRA-YNALLKGYVKTGSLKDAESIVSEMERSGFSPDEHTYSLLIDAYANAGRW 377
Query: 353 KEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRE--NGNVLTDAM 410
+ A + + A +P+ +++ +I+ S + D + K +V RE N V D
Sbjct: 378 ESARIVLKEMEASGVRPN----SYVFSRILASYR-DRGKWQKSFQVLREMRNSGVSPDRH 432
Query: 411 LNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHME 470
+V+ + G+CN + D A D M
Sbjct: 433 FYNVM-----IDTFGKCNCL-----------------------------DHALATFDRMR 458
Query: 471 ASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRA 530
G W +LI HC +G +KA + F+ M E G S ++++N++ + R
Sbjct: 459 MEGVQPDAVTWNTLIDCHCKSGHHNKAEELFEAMQES-GCSPCTTTYNIMINSFGEQERW 517
Query: 531 IDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRG-FKDALSLLCLMKDHGFPP---FVD 586
D K + ++ L TY L+ ++ Q G FKDA+ L +MK G P +
Sbjct: 518 ED-VKTLLGKMQSQGLLANVVTYTTLV-DIYGQSGRFKDAIECLEVMKSVGLKPSSTMYN 575
Query: 587 PFIKYVSKSGTSDDAIAFLKGMTSKRF-PSMSVVLCLFAAFFQARRHSEAQDLL 639
I ++ G S+ AI + M + PS+ V+ L AF + RR +EA +L
Sbjct: 576 ALINAYAQRGLSEQAINAFRVMRADGLKPSVLVLNSLINAFGEDRRDAEAFSVL 629
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 99/489 (20%), Positives = 185/489 (37%), Gaps = 86/489 (17%)
Query: 84 MICSYSSEPAMEQKESDFTVVSDIFYKFSDVNDISKQLE---------LSGVVFTHEMVL 134
M+ +E ++ E D +++DI F+ D+++ + LS T V+
Sbjct: 239 MLQKIYAEIESDKIELDGQLLNDIIVGFAKSGDVNRAMSFLAMVQGNGLSPKTATLVAVI 298
Query: 135 KVLKNLESSPDEARRFFNWVLEKESERLS-SKTYNLMLRIVGVHGLVQEFWGLVDVMKKK 193
L N + +EA F + KE + ++ YN +L+ G +++ +V M++
Sbjct: 299 TALGNAGRT-EEAEAIFEEL--KEGGLMPRTRAYNALLKGYVKTGSLKDAESIVSEMERS 355
Query: 194 GYGVASHVRNKMTEKFEKEG-LESDLEKLKGIFATGSIDNSIEKVASRICKVVRSDIWGD 252
G+ H + + + + G ES LK + A+G NS V SRI R
Sbjct: 356 GFSPDEHTYSLLIDAYANAGRWESARIVLKEMEASGVRPNSY--VFSRILASYR------ 407
Query: 253 DVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLG 312
D K+ +K+ R SG V D YN M G
Sbjct: 408 ---------------DRGKW---------QKSFQVLREMRNSG-VSPDRHFYNVMIDTFG 442
Query: 313 REDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVN 372
+ +C+D D MR +G + + T ++ + +A +L+E
Sbjct: 443 KCNCLDHALATFDRMRMEGVQPDAVTWNTLIDCHCKSGHHNKAEELFE------------ 490
Query: 373 CCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILK 432
+E+G N ++ + R + +L
Sbjct: 491 -------------------------AMQESGCSPCTTTYNIMINSFGEQERWEDVKTLLG 525
Query: 433 AMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAG 492
M+ G +A+ + + +G+ +A E ++ M++ G M+ +LI + G
Sbjct: 526 KMQSQGLLANVVTYTTLVDIYGQSGRFKDAIECLEVMKSVGLKPSSTMYNALINAYAQRG 585
Query: 493 DLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTT 552
++A + F+ M +G + ++ L+N + R +A V ++E DLKP T
Sbjct: 586 LSEQAINAFRVM-RADGLKPSVLVLNSLINAFGEDRRDAEAFS-VLQYMKENDLKPDVVT 643
Query: 553 YEELIKNLL 561
Y L+K L+
Sbjct: 644 YTTLMKALI 652
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 69/345 (20%), Positives = 133/345 (38%), Gaps = 10/345 (2%)
Query: 303 SYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFA 362
+YNA+ R D +++ ++ MR G+ + ++ + N ++ +A
Sbjct: 186 TYNALIGACARNDDLEKALNLMSRMRRDGFPSDFVNYSFIIQSLTRTNKSDSSMLQKIYA 245
Query: 363 MACKNKPSVNCCTFLLRKIVV--SKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALIS 420
+K ++ LL I+V +K D+ + + + NG A L +V+ AL +
Sbjct: 246 EIESDKIELDGQ--LLNDIIVGFAKSGDVNRAMSFLAMVQGNGLSPKTATLVAVITALGN 303
Query: 421 VGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKM 480
GR E I + ++EGG + + + + G +A + ME SG +
Sbjct: 304 AGRTEEAEAIFEELKEGGLMPRTRAYNALLKGYVKTGSLKDAESIVSEMERSGFSPDEHT 363
Query: 481 WVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNC 540
+ LI + AG + A ++M E G Y ++ +Y + + + + +
Sbjct: 364 YSLLIDAYANAGRWESARIVLKEM-EASGVRPNSYVFSRILASYRDRGKWQKSFQVLRE- 421
Query: 541 VREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFV---DPFIKYVSKSGT 597
+R + P Y +I AL+ M+ G P + I KSG
Sbjct: 422 MRNSGVSPDRHFYNVMIDTFGKCNCLDHALATFDRMRMEGVQPDAVTWNTLIDCHCKSGH 481
Query: 598 SDDAIAFLKGMT-SKRFPSMSVVLCLFAAFFQARRHSEAQDLLSK 641
+ A + M S P + + +F + R + + LL K
Sbjct: 482 HNKAEELFEAMQESGCSPCTTTYNIMINSFGEQERWEDVKTLLGK 526
>gi|302763707|ref|XP_002965275.1| hypothetical protein SELMODRAFT_83272 [Selaginella moellendorffii]
gi|300167508|gb|EFJ34113.1| hypothetical protein SELMODRAFT_83272 [Selaginella moellendorffii]
Length = 445
Score = 66.6 bits (161), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 82/353 (23%), Positives = 151/353 (42%), Gaps = 19/353 (5%)
Query: 163 SSKTYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRNKMTEKFEKEGLESDLEKLK 222
+S +YN ++ + G +QE + M K+G N M K GL + +L
Sbjct: 82 NSVSYNTLIDALCSSGRIQEAREELQAMAKRGVAPNRVTYNAMATGLGKAGLLDEAFELM 141
Query: 223 GI-----FATGSIDNSIEKVASRICKVVRSDIWGDDVERQ-LRDLNVT-FSNDLVKFVVD 275
G+ FA ++ + V +CK + D +E LR++ + +L+
Sbjct: 142 GVMESAGFALTAV--TFNPVVEFLCKSGKPDEACKVMETMLLRNIEPNILTLNLILHAFC 199
Query: 276 KLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEME 335
K P++AL E GF ++NA+ + D +D ++L+ M +
Sbjct: 200 K-AARPEEALGMTDIMVEMGFCP-TIVTFNALLELFCNTDQMDSAAELLETMARSKCKPN 257
Query: 336 METCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKV 395
T ++ +F+E + EA E + C P++ C + + + ++D L S+
Sbjct: 258 FVTYSIMVQKFAEMGRMVEARAFLEQLVVCGYAPNLLVCNAYVAGLCKTGEMD--LASRF 315
Query: 396 VRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSS 455
+ V E G A NS+++ +GRM E ++L+ M G + S S + L S
Sbjct: 316 LTVMAEEGCRANTATYNSLVEGFCKLGRMDEAERVLEEMIAEGSLPDSTTYSVLIQGLCS 375
Query: 456 AGKKDEANEFMDHMEAS----GSDVGDKMWVSLIKGHCVAGDLDKAADCFQKM 504
AG+ A FM ++ + + +V LI+ C G++D+AA ++M
Sbjct: 376 AGQIVHA--FMVMLQVTRAVESARPDPATFVKLIEKLCELGEMDRAALVLERM 426
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 66/280 (23%), Positives = 114/280 (40%), Gaps = 36/280 (12%)
Query: 297 VKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAV 356
V + +YNAMA+ LG+ +D ++++ M S G+ + T V+ + EA
Sbjct: 114 VAPNRVTYNAMATGLGKAGLLDEAFELMGVMESAGFALTAVTFNPVVEFLCKSGKPDEAC 173
Query: 357 DLYEFAMACKNKPSVNCCTFLLRKI---VVSKQLDMRLFSKVVR---------VFRENGN 404
+ E T LLR I +++ L + F K R + E G
Sbjct: 174 KVME--------------TMLLRNIEPNILTLNLILHAFCKAARPEEALGMTDIMVEMGF 219
Query: 405 VLTDAMLNSVLKALISVGRMGECNKILKAMEEG----GFIASSNMKSKIAFRLSSAGKKD 460
T N++L+ + +M ++L+ M F+ S M K A G+
Sbjct: 220 CPTIVTFNALLELFCNTDQMDSAAELLETMARSKCKPNFVTYSIMVQKFA----EMGRMV 275
Query: 461 EANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLL 520
EA F++ + G + + + G C G++D A+ F ++ +EG + L
Sbjct: 276 EARAFLEQLVVCGYAPNLLVCNAYVAGLCKTGEMDLASR-FLTVMAEEGCRANTATYNSL 334
Query: 521 VNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNL 560
V +C R +A + + + E L P TTY LI+ L
Sbjct: 335 VEGFCKLGRMDEAERVLEEMIAEGSL-PDSTTYSVLIQGL 373
Score = 46.6 bits (109), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 48/198 (24%), Positives = 90/198 (45%), Gaps = 5/198 (2%)
Query: 412 NSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEA 471
N+++ AL S GR+ E + L+AM + G + + +A L AG DEA E M ME+
Sbjct: 87 NTLIDALCSSGRIQEAREELQAMAKRGVAPNRVTYNAMATGLGKAGLLDEAFELMGVMES 146
Query: 472 SGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAI 531
+G + + +++ C +G D+A + M+ + + ++L+++ +C R
Sbjct: 147 AGFALTAVTFNPVVEFLCKSGKPDEACKVMETMLLRNIEPNI-LTLNLILHAFCKAARPE 205
Query: 532 DACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLM-KDHGFPPFV--DPF 588
+A + + E P T+ L++ A LL M + P FV
Sbjct: 206 EALGMT-DIMVEMGFCPTIVTFNALLELFCNTDQMDSAAELLETMARSKCKPNFVTYSIM 264
Query: 589 IKYVSKSGTSDDAIAFLK 606
++ ++ G +A AFL+
Sbjct: 265 VQKFAEMGRMVEARAFLE 282
Score = 41.6 bits (96), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 46/207 (22%), Positives = 89/207 (42%), Gaps = 17/207 (8%)
Query: 456 AGKKDEANEFMDHMEASGSDVGDKMWVS--LIKGHCVAGDLDKAADCFQKMVEKEGTSHA 513
AG+ DEA + + +G G + + ++KG A +D+A +M K +
Sbjct: 27 AGEFDEAKRLVAEFKDTGMSPGSLVVLHNLMLKGFSEARLVDEAKSHLHRMDCKPNS--- 83
Query: 514 GYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLL 573
+ + L++ CS R +A + + + + P TY + L +A L+
Sbjct: 84 -VSYNTLIDALCSSGRIQEAREELQAMAKR-GVAPNRVTYNAMATGLGKAGLLDEAFELM 141
Query: 574 CLMKDHGFPPFV---DPFIKYVSKSGTSDDAIAFLKGMTSKRF-PSMSVVLCLFAAFFQA 629
+M+ GF +P ++++ KSG D+A ++ M + P++ + + AF +A
Sbjct: 142 GVMESAGFALTAVTFNPVVEFLCKSGKPDEACKVMETMLLRNIEPNILTLNLILHAFCKA 201
Query: 630 RRHSEAQDL------LSKCPRYVRNHA 650
R EA + + CP V +A
Sbjct: 202 ARPEEALGMTDIMVEMGFCPTIVTFNA 228
>gi|302784788|ref|XP_002974166.1| hypothetical protein SELMODRAFT_100825 [Selaginella moellendorffii]
gi|300158498|gb|EFJ25121.1| hypothetical protein SELMODRAFT_100825 [Selaginella moellendorffii]
Length = 647
Score = 66.6 bits (161), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 76/360 (21%), Positives = 139/360 (38%), Gaps = 44/360 (12%)
Query: 283 KALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKV 342
+AL+ + A E GF+ D +Y ++ L + ++ + EMR++GYE + T +
Sbjct: 307 EALLQLKEAVERGFIP-DAVTYTSIIDGLCKLGRVEEGCERFHEMRNRGYEPDAVTYAAL 365
Query: 343 LGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFREN 402
+ F + M+ +A +V R ++
Sbjct: 366 IDGFMKAKMIPKA-------------------------------------HRVYRQMLQS 388
Query: 403 GNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEA 462
G V++ N +L L GR+ E AMEE G +A+ S + S G A
Sbjct: 389 GTVVSTVTYNIILDGLCKAGRVAEAYATFLAMEERGCVATVVTYSALMDGFCSEGNVSAA 448
Query: 463 NEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVN 522
E M G + + +I+G C AG L KA F+K++++ Y + ++
Sbjct: 449 VELFRRMLDRGCEPNLVSYNIIIRGLCRAGKLAKAYFYFEKLLQRRLCPDV-YTFNSFLH 507
Query: 523 TYCSKNRAI-DACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGF 581
C + + D + + V + P +Y L+ + G + L + M G
Sbjct: 508 GLCQRLDTVGDGVELFESMVSQ-GTSPNLHSYSILMDGICRAGGLEVTLEIFHEMVSRGV 566
Query: 582 PPFV---DPFIKYVSKSGTSDDAIAFLKGMTSKRFPSMSVVLCLFAAFFQARRHSEAQDL 638
P V + I+++ +G D+A+ + + + P L A + R EA+ L
Sbjct: 567 APDVVVFNTLIRWLCIAGRVDEALEVFRELERRSAPDAWSYWSLLDALSRCERMEEARLL 626
Score = 56.2 bits (134), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 75/339 (22%), Positives = 134/339 (39%), Gaps = 41/339 (12%)
Query: 300 DESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLY 359
D A+ + L + +DR +LDEM +M V+ + EA +
Sbjct: 8 DTRVCTALLNGLCKTGQLDRAMLLLDEMPCSP---DMVAFTVVINGLCREKRLDEAFSVL 64
Query: 360 EFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALI 419
E A+ +P + + ++++D ++++ E + T +++ L+
Sbjct: 65 ERAVRAGCEPDYVTYNVFIDGLCKAERVDDAF--QLLKKMDEKKCLPTTVTYTALVDGLL 122
Query: 420 SVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDK 479
GR+ E IL+ M E G + + + LS AG+ +EA M +G
Sbjct: 123 KAGRLDEAMAILEQMVEKGNSPTLKTYTVVIDGLSKAGRVEEARRIFVDMLGNGCRPDAF 182
Query: 480 MWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHN 539
++ +LI G G LD+A +MVE G A R ++ +HN
Sbjct: 183 VYTALISGLAKIGKLDEALVYLNQMVEN------GCA------------RGVEPDVVIHN 224
Query: 540 CVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDH-GFPPFV-DPFIKYVSKSGT 597
V I+ L +DAL+ + D F +P + + K+
Sbjct: 225 LV---------------IRQLCASGNLEDALAYFDELDDSLDLTHFTFNPLVAALCKAER 269
Query: 598 SDDAIAFLKGMTSKR-FPSMSVVLCLFAAFFQARRHSEA 635
+++AIAF+K M+ +R FP++ L F + R EA
Sbjct: 270 TEEAIAFVKKMSERRCFPTLFTYTSLVDGFLKLGRLDEA 308
Score = 43.9 bits (102), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 42/169 (24%), Positives = 70/169 (41%), Gaps = 17/169 (10%)
Query: 476 VGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACK 535
V ++ +L+ G C G LD+A ++++ S A +++N C + R +A
Sbjct: 7 VDTRVCTALLNGLCKTGQLDRA----MLLLDEMPCSPDMVAFTVVINGLCREKRLDEAFS 62
Query: 536 FVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLL-------CLMKDHGFPPFVDPF 588
+ VR +P + TY I L DA LL CL + VD
Sbjct: 63 VLERAVRA-GCEPDYVTYNVFIDGLCKAERVDDAFQLLKKMDEKKCLPTTVTYTALVDGL 121
Query: 589 IKYVSKSGTSDDAIAFLKGMTSK-RFPSMSVVLCLFAAFFQARRHSEAQ 636
+ K+G D+A+A L+ M K P++ + +A R EA+
Sbjct: 122 L----KAGRLDEAMAILEQMVEKGNSPTLKTYTVVIDGLSKAGRVEEAR 166
Score = 42.4 bits (98), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 44/206 (21%), Positives = 84/206 (40%), Gaps = 7/206 (3%)
Query: 412 NSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEA 471
S++ + +GR+ E LK E GFI + + I L G+ +E E M
Sbjct: 293 TSLVDGFLKLGRLDEALLQLKEAVERGFIPDAVTYTSIIDGLCKLGRVEEGCERFHEMRN 352
Query: 472 SGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAI 531
G + + +LI G A + KA +++M++ GT + +++++ C R
Sbjct: 353 RGYEPDAVTYAALIDGFMKAKMIPKAHRVYRQMLQS-GTVVSTVTYNIILDGLCKAGRVA 411
Query: 532 DA-CKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPF-- 588
+A F+ + E TY L+ + A+ L M D G P + +
Sbjct: 412 EAYATFLA--MEERGCVATVVTYSALMDGFCSEGNVSAAVELFRRMLDRGCEPNLVSYNI 469
Query: 589 -IKYVSKSGTSDDAIAFLKGMTSKRF 613
I+ + ++G A + + + +R
Sbjct: 470 IIRGLCRAGKLAKAYFYFEKLLQRRL 495
>gi|449508067|ref|XP_004163208.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g65560-like [Cucumis sativus]
Length = 830
Score = 66.6 bits (161), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 121/587 (20%), Positives = 230/587 (39%), Gaps = 64/587 (10%)
Query: 78 PNFRNPMICSYSSEPAMEQKESDFTVVSDIFYKFS-DVNDISKQLELSGVVFTHEMVLKV 136
P+ +P+ S ++ P E T++S ++ S ++ +S +L+ VV +L+
Sbjct: 32 PHPSSPLPISSTTNPFPELVSKISTILSSPKWEHSSELCHLSPKLKPHHVV----NILQT 87
Query: 137 LKNLESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLVDVMKKKGYG 196
KN D RFF W+ ++ + + ML +++ + +
Sbjct: 88 HKN----TDSVLRFFFWISRRKFFKHDMSCFVSMLN---------------RLVRDRLFA 128
Query: 197 VASHVRNKMTEKFEKEG----LESDLEKLKGIFATGSIDNSIEKVASRICKV----VRSD 248
A HVR M + EG + L ++ + G S + ++ K + D
Sbjct: 129 PADHVRILMIKSCRNEGEVKRVTQFLSEINSKYDFGYTLCSFTTLLIQLGKFDMVDLARD 188
Query: 249 IWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALI--FFRW-AEESGFVKHDESSYN 305
++ + +R +TF N ++ + K + K ++ FR+ A + F +Y
Sbjct: 189 MYIKMLNSGIRPSLLTF-NTMINILCKKGRVQEAKLIMSHIFRYDAYPNAF------TYT 241
Query: 306 AMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMAC 365
++ R +D + + D M G + T ++ ++EA+D+ E +
Sbjct: 242 SLILGHCRNHNLDLAFAMFDRMVKDGCDPNSVTYSTLINGLCSEGRLEEAMDMLEEMVQK 301
Query: 366 KNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVF---RENGNVLTDAMLNSVLKALISVG 422
+P+V T L + D S+ V + ++ G V +++ L G
Sbjct: 302 GIEPTVYTYTIPLVSLC-----DAGCSSEAVELLGKMKKRGCVPNIQTFTALISGLSRDG 356
Query: 423 RMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWV 482
+ + M G + ++ + + +L G+ + A M + GS + +
Sbjct: 357 KFEIAIGLYHKMLADGLVPTTVTYNALINQLCVEGRFETAFTIFKWMLSHGSLPSTQTYN 416
Query: 483 SLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVR 542
+IK C+ GD+ KA F KM+ K G+S + L+ YC + +A + + ++
Sbjct: 417 EIIKCFCLMGDIQKAMVIFDKML-KAGSSPNVITYNTLIYGYCKQGNLNNAMRLLE-IMK 474
Query: 543 EYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPP-------FVDPFIKYVSKS 595
LKP TY ELI + A SL M +HG P +D +
Sbjct: 475 GNGLKPDAWTYTELISGFSRGGKLEHATSLFYGMMEHGISPNHVTYTAIIDGYFNLAK-- 532
Query: 596 GTSDDAIA-FLKGMTSKRFPSMSVVLCLFAAFFQARRHSEAQDLLSK 641
DDA+A F K + S PS + + F + SEA++ K
Sbjct: 533 --VDDALALFWKMVESGNLPSSQTYNVMISGFSKTNSISEAENFCGK 577
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 69/314 (21%), Positives = 124/314 (39%), Gaps = 11/314 (3%)
Query: 303 SYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFA 362
+Y+ + + L E ++ +L+EM KG E + T L + EAV+L
Sbjct: 274 TYSTLINGLCSEGRLEEAMDMLEEMVQKGIEPTVYTYTIPLVSLCDAGCSSEAVELLGKM 333
Query: 363 MACKNKPSVNCCTFLLRKIVVSKQLDMR--LFSKVVRVFRENGNVLTDAMLNSVLKALIS 420
P++ T L+ + + ++ L+ K++ +G V T N+++ L
Sbjct: 334 KKRGCVPNIQTFTALISGLSRDGKFEIAIGLYHKML----ADGLVPTTVTYNALINQLCV 389
Query: 421 VGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKM 480
GR I K M G + S+ ++I G +A D M +GS
Sbjct: 390 EGRFETAFTIFKWMLSHGSLPSTQTYNEIIKCFCLMGDIQKAMVIFDKMLKAGSSPNVIT 449
Query: 481 WVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNC 540
+ +LI G+C G+L+ A + M + G + L++ + + A +
Sbjct: 450 YNTLIYGYCKQGNLNNAMRLLEIM-KGNGLKPDAWTYTELISGFSRGGKLEHATSLFYG- 507
Query: 541 VREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPF---IKYVSKSGT 597
+ E+ + P H TY +I DAL+L M + G P + I SK+ +
Sbjct: 508 MMEHGISPNHVTYTAIIDGYFNLAKVDDALALFWKMVESGNLPSSQTYNVMISGFSKTNS 567
Query: 598 SDDAIAFLKGMTSK 611
+A F M +
Sbjct: 568 ISEAENFCGKMVKQ 581
Score = 43.5 bits (101), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 61/303 (20%), Positives = 109/303 (35%), Gaps = 5/303 (1%)
Query: 282 KKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVK 341
+ A F+W G + ++ YN + I + + D+M G + T
Sbjct: 394 ETAFTIFKWMLSHGSLPSTQT-YNEIIKCFCLMGDIQKAMVIFDKMLKAGSSPNVITYNT 452
Query: 342 VLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRE 401
++ + ++ + A+ L E KP T L+ +L+ + + E
Sbjct: 453 LIYGYCKQGNLNNAMRLLEIMKGNGLKPDAWTYTELISGFSRGGKLEHA--TSLFYGMME 510
Query: 402 NGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDE 461
+G +++ ++ ++ + + M E G + SS + + S E
Sbjct: 511 HGISPNHVTYTAIIDGYFNLAKVDDALALFWKMVESGNLPSSQTYNVMISGFSKTNSISE 570
Query: 462 ANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLV 521
A F M G + S I G C G A F +M EK Y L+
Sbjct: 571 AENFCGKMVKQGLLPNVITYTSFIDGLCRNGRTGLAFKIFHEM-EKRNYFPNLYTYSSLI 629
Query: 522 NTYCSKNRAIDACKF-VHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHG 580
C + RA DA + + + Y +P TY L+K L + +A L+ M+ G
Sbjct: 630 YGLCQEGRAEDAEMYNLLARLTHYGCEPNVDTYTTLVKGLCGEGRCYEADQLVVSMQKKG 689
Query: 581 FPP 583
P
Sbjct: 690 LQP 692
>gi|47848296|dbj|BAD22160.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
Length = 454
Score = 66.6 bits (161), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 77/344 (22%), Positives = 143/344 (41%), Gaps = 34/344 (9%)
Query: 262 NVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFW 321
+ + ++V ++ K GD+ K AL FF+WA+ +H + N M +LG+ ID+ W
Sbjct: 31 GIRLTGNIVDTLLFKFGDDWKSALGFFQWAQSRDDYRHTAYACNRMVDLLGKMRQIDQMW 90
Query: 322 KVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLY---EFAMACKNKPSVNCCTFLL 378
++L +M +G + +ET K + R + K+ V L+ E +N ++N +L
Sbjct: 91 ELLSDMHGRGL-VTVETVAKSIRRLAGARRWKDVVLLFDKLEDMGLERNTETMNVLLDVL 149
Query: 379 ---RKIVVSKQL----------DMRLFSKVVRVF----------------RENGNVLTDA 409
RKI V++++ D F+ V + + G +
Sbjct: 150 CKERKIEVAREVFAVLSPHIPPDAYTFNIFVHGWCSIRRIDEAMWTIEEMKRRGFPPSVI 209
Query: 410 MLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHM 469
+VL+A ++L +M G + + I L+ + +EA M
Sbjct: 210 TYTTVLEAYCKQRNFRRVYEVLDSMGSQGCHPNVITYTMIMTSLAKCERFEEALSVSHRM 269
Query: 470 EASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNR 529
++SG + SLI +G L +A+ F+ + G SH + +++ +C R
Sbjct: 270 KSSGCKPDTLFYNSLINLLGKSGHLFEASQVFRVEMPMNGVSHNLATYNTMISIFCYYGR 329
Query: 530 AIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLL 573
DA + + KP +Y L++ L +RG D + L
Sbjct: 330 DDDALNVLKE-MEAQSCKPDIQSYRPLLRLFLSRRGQADTVRHL 372
>gi|357454671|ref|XP_003597616.1| hypothetical protein MTR_2g100200 [Medicago truncatula]
gi|124360397|gb|ABN08410.1| Pentatricopeptide repeat [Medicago truncatula]
gi|355486664|gb|AES67867.1| hypothetical protein MTR_2g100200 [Medicago truncatula]
Length = 527
Score = 66.6 bits (161), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 86/354 (24%), Positives = 138/354 (38%), Gaps = 38/354 (10%)
Query: 212 EGLESDLEKLKGIFATG-SIDNSIEKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLV 270
+G S +KL+GIF +IE+ S +C V DI G + LN F N
Sbjct: 66 DGFLSPEDKLRGIFLQKLKGKAAIEQALSNVCIDVNVDIIG-------KVLN--FGN--- 113
Query: 271 KFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSK 330
LG E ++FF WA + V D SY+ + LGR +VLDEMR
Sbjct: 114 ------LGGEA--MVMFFNWALKQPMVPRDVGSYHVIVKALGRRKFFVFMMQVLDEMRLN 165
Query: 331 GYEMEMETCVKVLGRFSERNMVKEAVDLY---EFAMACKNKPSVNC-CTFLLRKIVVSKQ 386
G + ++ V+ F V +A+ L+ + C++ +N + L R+ V
Sbjct: 166 GIKADLLMLSIVIDSFVNAGHVSKAIQLFGNLDDLGLCRDTEVLNVLLSCLCRRCHVGAA 225
Query: 387 LDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMK 446
+ V + + D N V+ +GR+ E K++K ME GF N
Sbjct: 226 ------ASVFNSMKGKVSFNVDT-YNVVVGGWSKLGRVNEIEKVMKEMEVEGFSPDFNTL 278
Query: 447 SKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVE 506
+ L AG+ DEA E M+ + + + M + I GD D + M+
Sbjct: 279 AFFLEGLGRAGRMDEAVEVFGSMKEKDTAIYNAMIFNFIS----IGDFDGFMKYYNGMLS 334
Query: 507 KEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNL 560
+ + ++ + + DA +R+ + P T IK L
Sbjct: 335 DNCEPNI-HTYSRMITAFLRTRKVADALLMFDEMLRQ-GVVPPTGTITSFIKQL 386
>gi|449444190|ref|XP_004139858.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g65560-like [Cucumis sativus]
gi|449530677|ref|XP_004172320.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g65560-like [Cucumis sativus]
Length = 839
Score = 66.2 bits (160), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 79/314 (25%), Positives = 131/314 (41%), Gaps = 36/314 (11%)
Query: 279 DEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMR-----SKGYE 333
+ + L FF W + F KHD S + +M + L R DR + D +R S E
Sbjct: 89 NNTESVLRFFHWVSRTHFFKHDMSCFVSMLNRLVR----DRLFVPADNVRILMIKSCRNE 144
Query: 334 MEMETCVKVLGRFSERNMVKE-AVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLF 392
E++ ++VL SE N + LY F+ T L++ + DM
Sbjct: 145 GEVKRVIQVL---SEINTTYDFGYTLYSFS------------TLLIQL----GKFDMDGL 185
Query: 393 SKVVRVFRENGNVLTDAM-LNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAF 451
+ V + N + + N+++K L + G++ E I+ + G + + +
Sbjct: 186 GRDVYIEMLNSGIRPNLFTFNAMIKILCNKGKVQEAELIMGHIFHYGACPDTFTYTSLII 245
Query: 452 RLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEK--EG 509
G D A E D M G D + +LI G C G L++A D ++M++K E
Sbjct: 246 GHCKNGNLDLAFEMFDRMVKDGCDPNSVTYSALINGLCSEGRLEEAMDMLEEMIDKGIEP 305
Query: 510 TSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDA 569
T HA Y I ++ + C R+ +A K + +++ P TY LI L F+ A
Sbjct: 306 TVHA-YTIPIV--SLCDAGRSCEAVKLLGK-MKKRGCGPNVQTYTALISGLSRDGKFEVA 361
Query: 570 LSLLCLMKDHGFPP 583
+ + M G P
Sbjct: 362 IGVYHKMLADGLVP 375
Score = 41.6 bits (96), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 62/290 (21%), Positives = 111/290 (38%), Gaps = 8/290 (2%)
Query: 303 SYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFA 362
+Y+A+ + L E + + + M S ET ++ F +++A +++
Sbjct: 379 TYSALINQLYVEGRFETALTIFEWMLSHDSLPNTETYNVIIKGFCSIGYIQKATAIFDQM 438
Query: 363 MACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVG 422
+ K PS N T+ + + KQ M +++ + + NG L +++ G
Sbjct: 439 L--KAGPSPNVITYNIIIHIYFKQGYMNNAMRLLEMMKGNGLKLDTWTYANLISGFSRGG 496
Query: 423 RMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWV 482
++ + M E G + + I + K D+A M SG+ +
Sbjct: 497 KLEHAFSLFNEMVEHGISPNVVTYNAIINGYLTVAKVDDALALFWKMVESGNVPSSGTYN 556
Query: 483 SLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVR 542
+I G + +A + KMV K+G ++ C R A K H ++
Sbjct: 557 MMISGFSKTNRISEAENFCGKMV-KQGLLPNVITYTSFIDGLCKNGRTSLAFKIFHE-MK 614
Query: 543 EYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPFIKYV 592
+ D P TY LI L + +DA LL D G P VD + V
Sbjct: 615 KRDYFPNLCTYSSLIDGLCQEGQAEDAERLL----DDGCEPNVDTYTTLV 660
>gi|224142151|ref|XP_002324422.1| predicted protein [Populus trichocarpa]
gi|222865856|gb|EEF02987.1| predicted protein [Populus trichocarpa]
Length = 453
Score = 66.2 bits (160), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 74/333 (22%), Positives = 134/333 (40%), Gaps = 45/333 (13%)
Query: 353 KEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLD--MRLFSKVVRVFRENGNVLTDAM 410
+EA ++ M +KP++ T L+ + K +RL SKV ENG +
Sbjct: 30 REAHSIFNSLMDEGHKPTLITYTTLVAALTRQKLFKSILRLISKV----EENGMKPDSIL 85
Query: 411 LNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHME 470
NS++ A G M E K+ + M+E G +++ + + +AGK +EA + ++ ++
Sbjct: 86 FNSIINAFSESGNMKEAMKLFRKMKESGCKPTTSTFNTLIKGYGNAGKTEEALKLLEFLQ 145
Query: 471 ASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMV-------------------EKEGTS 511
G + + L++ C ++++A + KMV EK T
Sbjct: 146 DGGVKPNQRTYNILVRAWCNKENMEEAWNMVYKMVASGMQPDAVTYNTLARAYAEKGETI 205
Query: 512 HAGYAI---------------DLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEEL 556
A I ++VN YC + +DA +FV ++E + P + L
Sbjct: 206 RAEEMILEMLNRRVTPNERTCSIIVNGYCKEGNMVDASRFVFR-MKELGVLPNLFVFNSL 264
Query: 557 IKNLLVQRGFKDALSLLCLMKDHGFPPFVDPFIKYV---SKSGTSDDAIAFLKGMTSKRF 613
IK L + +L LM+++G P V F + S +G D M
Sbjct: 265 IKGFLDTMDTEGVDEVLTLMEENGVRPDVVTFSTIMNAWSSAGRMDKCKEIFNDMVKAEI 324
Query: 614 -PSMSVVLCLFAAFFQARRHSEAQDLLSKCPRY 645
P + L + +A +A+ +L+ +Y
Sbjct: 325 EPDIHAFSILAKGYVRAGEPEKAESILTSMRKY 357
Score = 56.2 bits (134), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 92/440 (20%), Positives = 177/440 (40%), Gaps = 37/440 (8%)
Query: 144 PDEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRN 203
P EA FN +++ E + + TY ++ + L + L+ +++ G S + N
Sbjct: 29 PREAHSIFNSLMD-EGHKPTLITYTTLVAALTRQKLFKSILRLISKVEENGMKPDSILFN 87
Query: 204 KMTEKFEKEGLESDLEKLKGIFATGSIDNSIEKVASRICKVVRSDIWGDDVERQLRDLNV 263
+ F + G + KL K+ CK S
Sbjct: 88 SIINAFSESGNMKEAMKL------------FRKMKESGCKPTTS---------------- 119
Query: 264 TFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKV 323
TF N L+K + + ++AL + ++ G VK ++ +YN + ++ ++ W +
Sbjct: 120 TF-NTLIKGYGN--AGKTEEALKLLEFLQDGG-VKPNQRTYNILVRAWCNKENMEEAWNM 175
Query: 324 LDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVV 383
+ +M + G + + T + ++E+ A ++ + + P+ C+ ++
Sbjct: 176 VYKMVASGMQPDAVTYNTLARAYAEKGETIRAEEMILEMLNRRVTPNERTCSIIVNG--Y 233
Query: 384 SKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASS 443
K+ +M S+ V +E G + + NS++K + +++L MEE G
Sbjct: 234 CKEGNMVDASRFVFRMKELGVLPNLFVFNSLIKGFLDTMDTEGVDEVLTLMEENGVRPDV 293
Query: 444 NMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQK 503
S I SSAG+ D+ E + M + + + L KG+ AG+ +KA
Sbjct: 294 VTFSTIMNAWSSAGRMDKCKEIFNDMVKAEIEPDIHAFSILAKGYVRAGEPEKAESILTS 353
Query: 504 MVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQ 563
M K G +++ +CS + A K V+ + E + P TYE LI
Sbjct: 354 M-RKYGVHPNVVICTTVISGWCSAGKMEHAMK-VYEKMCEIGVSPNLKTYETLIWGYGEA 411
Query: 564 RGFKDALSLLCLMKDHGFPP 583
+ A LL +M++ G P
Sbjct: 412 KQPLKAEELLQVMEEKGVFP 431
>gi|22325737|ref|NP_671862.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|218546776|sp|Q84VG6.2|PP160_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At2g17525, mitochondrial; Flags: Precursor
gi|330251547|gb|AEC06641.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 626
Score = 66.2 bits (160), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 94/421 (22%), Positives = 167/421 (39%), Gaps = 81/421 (19%)
Query: 267 NDLVKFVVDKLGDEPKKALIFFRWAEE-SGFVKHDESSYNAMASVLGREDCIDRFWKVLD 325
+ +V+ ++D+ AL FRWA GF+ H S+Y A+ L D +++LD
Sbjct: 44 DHIVRLILDQ--KSASGALETFRWASTFPGFI-HSRSTYRALFHKLCVFRRFDTVYQLLD 100
Query: 326 EMR-SKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCT--------- 375
EM S G + V ++ F ++K + + + KPS+
Sbjct: 101 EMPDSIGLPPDDAIFVTIIRGFGRARLIKRVISVVDLVSKFGIKPSLKVFNSILDVLVKE 160
Query: 376 -------FLLRKIVVSK--------QLDMRLFS---------KVVRVFRENGNVLTDAML 411
F RK++ S + M+ S K++++ + +G +
Sbjct: 161 DIDIAREFFTRKMMASGIHGDVYTYGILMKGLSLTNRIGDGFKLLQIMKTSGVAPNAVVY 220
Query: 412 NSVLKALISVGRMGECNKILKAMEEG-------------------------------GFI 440
N++L AL G++G ++ M+E GF+
Sbjct: 221 NTLLHALCKNGKVGRARSLMSEMKEPNDVTFNILISAYCNEQKLIQSMVLLEKCFSLGFV 280
Query: 441 ASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADC 500
+K+ L + G+ EA E ++ +E+ G V +L+KG+C G + A
Sbjct: 281 PDVVTVTKVMEVLCNEGRVSEALEVLERVESKGGKVDVVACNTLVKGYCALGKMRVAQRF 340
Query: 501 FQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNL 560
F +M E++G +LL+ YC +D+ N ++ ++ T+ LI+ L
Sbjct: 341 FIEM-ERKGYLPNVETYNLLIAGYCDVG-MLDSALDTFNDMKTDAIRWNFATFNTLIRGL 398
Query: 561 LVQRGFKDALSLLCLMKD----HGFPPFVDPF---IKYVSKSGTSDDAIAFLKGMTSKRF 613
+ D L +L +M+D HG +DP+ I K +DA+ FL M K F
Sbjct: 399 SIGGRTDDGLKILEMMQDSDTVHG--ARIDPYNCVIYGFYKENRWEDALEFLLKM-EKLF 455
Query: 614 P 614
P
Sbjct: 456 P 456
>gi|255660894|gb|ACU25616.1| pentatricopeptide repeat-containing protein [Glandularia flava]
Length = 481
Score = 66.2 bits (160), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 84/391 (21%), Positives = 160/391 (40%), Gaps = 49/391 (12%)
Query: 258 LRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCI 317
+R+L +F ++LV V+ + AL FFRW E S +H+ ++ + +LGR +
Sbjct: 3 IRNLVPSFDHELVYNVLHS-SKTSEHALQFFRWVERSNLFEHNRETHLKIIEILGRASKL 61
Query: 318 DRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFL 377
+ +L +M KG E + + V ++ + ++ +V+E+V
Sbjct: 62 NHARCILLDMPKKGLEWDEDMWVMMIDSYGKQGIVQESV--------------------- 100
Query: 378 LRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEG 437
++F K+ E G T N++ K ++ GR + M
Sbjct: 101 ------------KMFQKM----EELGVERTIKSYNALFKVILRRGRYMMAKRYFNKMLSE 144
Query: 438 GFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKA 497
G + + + + + +GK + N F + M++ + ++I G+ +++A
Sbjct: 145 GIEPTRHTFNVMIWGFFLSGKVETXNRFFEDMKSREISPDVVTYNTMINGYYRVKKMEEA 204
Query: 498 ADCFQKMVEKEGTSHAGYAI--DLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEE 555
F VE +G + + L+ Y S ++ DA + V ++ + +KP TY
Sbjct: 205 EKYF---VEMKGRNIEPTVVTYTTLIKGYVSVDQVDDALRLVEE-MKGFGIKPNAITYST 260
Query: 556 LIKNLLVQRGFKDALSLLCLMKDHGFPPFVDP-FIKYVS---KSGTSDDAIAFLKGMTSK 611
L+ L +A +L M D P + F++ +S KSG D A LK M
Sbjct: 261 LLPGLCNAEKMSEARVILKEMMDKYLAPTDNSIFMRLISSHCKSGNLDAAADVLKAMIRL 320
Query: 612 RFPSMSVVL-CLFAAFFQARRHSEAQDLLSK 641
P+ + L F + ++ +A LL K
Sbjct: 321 SVPTEAGHYGVLIENFCKVGQYDKAVKLLDK 351
Score = 54.7 bits (130), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 77/366 (21%), Positives = 158/366 (43%), Gaps = 22/366 (6%)
Query: 265 FSNDLVKFVVDKLGDEP--KKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWK 322
+ D+ ++D G + ++++ F+ EE G V+ SYNA+ V+ R +
Sbjct: 78 WDEDMWVMMIDSYGKQGIVQESVKMFQKMEELG-VERTIKSYNALFKVILRRGRYMMAKR 136
Query: 323 VLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIV 382
++M S+G E T ++ F V+ +E + + P V ++
Sbjct: 137 YFNKMLSEGIEPTRHTFNVMIWGFFLSGKVETXNRFFEDMKSREISPDVVTYNTMINGYY 196
Query: 383 VSKQLDMRLFSKVVRVFRE-NGNVL--TDAMLNSVLKALISVGRMGECNKILKAMEEGGF 439
K+++ + + F E G + T +++K +SV ++ + ++++ M+ G
Sbjct: 197 RVKKME-----EAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDALRLVEEMKGFGI 251
Query: 440 IASSNMKSKIAFRLSSAGKKDEANEFM-DHMEASGSDVGDKMWVSLIKGHCVAGDLDKAA 498
++ S + L +A K EA + + M+ + + +++ LI HC +G+LD AA
Sbjct: 252 KPNAITYSTLLPGLCNAEKMSEARVILKEMMDKYLAPTDNSIFMRLISSHCKSGNLDAAA 311
Query: 499 DCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCV-REYDLKPWHT------ 551
D + M+ + AG+ +L+ +C + A K + + ++ L+P T
Sbjct: 312 DVLKAMIRLSVPTEAGH-YGVLIENFCKVGQYDKAVKLLDKLIEKDIILRPQSTLHLEPS 370
Query: 552 TYEELIKNLLVQRGFKDALSLLCLMKDHGF--PPFVDPFIKYVSKSGTSDDAIAFLKGMT 609
Y I+ L A +L+ + G P ++ I+ S+ G+ D A LK M
Sbjct: 371 AYNPXIEYLCNNGQAXKAETLVRQLXKLGVQDPTALNTLIRGXSQEGSPDSAFELLKIML 430
Query: 610 SKRFPS 615
++ S
Sbjct: 431 RRKVDS 436
>gi|359496995|ref|XP_003635394.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g65820-like [Vitis vinifera]
Length = 622
Score = 66.2 bits (160), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 76/402 (18%), Positives = 158/402 (39%), Gaps = 40/402 (9%)
Query: 254 VERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGR 313
+E L++ V + L + V+++ GD FF WA + +H Y AM +LG+
Sbjct: 75 LELALQESGVAVRSGLTERVLNRCGDAGNLGYRFFVWASKQPGYRHSYEVYKAMIKILGK 134
Query: 314 EDCIDRFWKVLDEMRSKGYE-MEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVN 372
W +++EMR + + + V ++ RF+ MVK+A+++ + P
Sbjct: 135 MRQFGAVWALIEEMRRENPQFVSPYVFVVLMRRFASARMVKKAIEVLD------EMPKYG 188
Query: 373 CCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAML---------------NSVLKA 417
C + D +F ++ +NG+V A L S+L
Sbjct: 189 C------------EPDEHVFGCLLDALCKNGSVKEAASLFEDMRIRFTPTLKHFTSLLYG 236
Query: 418 LISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVG 477
G++ E +L + E GF + + + ++AGK +A + + M +
Sbjct: 237 WCREGKLMEAKYVLVQIREAGFEPDIVVYNNLLTGYAAAGKMVDAYDLLKEMRRKECEPN 296
Query: 478 DKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFV 537
+ +LI+ C +++A F +M + G L++ +C + + +
Sbjct: 297 VMSFTTLIQALCAKKKMEEAMRVFFEM-QSCGCPADAVTYTTLISGFCKWGKISKGYELL 355
Query: 538 HNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPF---IKYVSK 594
N +++ + P TY ++ + ++ + L+ M+ G P ++ + I+ K
Sbjct: 356 DNMIQQGHI-PNPMTYLHIMAAHEKKEELEECIELMEEMRKIGCTPDLNIYNIVIRLACK 414
Query: 595 SGTSDDAIAFLKGMTSKRF-PSMSVVLCLFAAFFQARRHSEA 635
G + + M + P + + + F R EA
Sbjct: 415 LGEIKEGVRVWNEMEATGLSPGLDTFVIMIHGFLSQRCLVEA 456
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 95/498 (19%), Positives = 193/498 (38%), Gaps = 79/498 (15%)
Query: 86 CSYSSEPAMEQKESDFTVVSDIFYKF-SDVNDISKQLELSGVVFTHEMVLKVLKNLESSP 144
C+Y ++ +D V I KF S V + L+ SGV + +VL +
Sbjct: 45 CTYDQN--YDEFSADVEKVYRILRKFHSRVPKLELALQESGVAVRSGLTERVLNRCGDAG 102
Query: 145 DEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLVDVMKKKG---------- 194
+ RFF W ++ R S + Y M++I+G W L++ M+++
Sbjct: 103 NLGYRFFVWASKQPGYRHSYEVYKAMIKILGKMRQFGAVWALIEEMRRENPQFVSPYVFV 162
Query: 195 -----YGVASHVRN--KMTEKFEKEGLESDLEKLKGIFATGSIDNSIEKVASRICKVVRS 247
+ A V+ ++ ++ K G E D + + S+++ AS
Sbjct: 163 VLMRRFASARMVKKAIEVLDEMPKYGCEPDEHVFGCLLDALCKNGSVKEAAS-------- 214
Query: 248 DIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAM 307
D+ + F+ L F + + W E + E+ Y
Sbjct: 215 ---------LFEDMRIRFTPTLKHFTS-----------LLYGWCREGKLM---EAKY--- 248
Query: 308 ASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKN 367
VL ++R G+E ++ +L ++ + +A DL + +
Sbjct: 249 ---------------VLVQIREAGFEPDIVVYNNLLTGYAAAGKMVDAYDLLKEMRRKEC 293
Query: 368 KPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRE--NGNVLTDAM-LNSVLKALISVGRM 424
+P+V T L++ + K+++ + +RVF E + DA+ +++ G++
Sbjct: 294 EPNVMSFTTLIQALCAKKKME-----EAMRVFFEMQSCGCPADAVTYTTLISGFCKWGKI 348
Query: 425 GECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSL 484
+ ++L M + G I + I + +E E M+ M G ++ +
Sbjct: 349 SKGYELLDNMIQQGHIPNPMTYLHIMAAHEKKEELEECIELMEEMRKIGCTPDLNIYNIV 408
Query: 485 IKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCV-RE 543
I+ C G++ + + +M E G S ++++ + S+ ++AC+F V R
Sbjct: 409 IRLACKLGEIKEGVRVWNEM-EATGLSPGLDTFVIMIHGFLSQRCLVEACEFFKEMVGRG 467
Query: 544 YDLKPWHTTYEELIKNLL 561
P + T +EL+ +LL
Sbjct: 468 LLSAPQYGTLKELLNSLL 485
>gi|297823043|ref|XP_002879404.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297325243|gb|EFH55663.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 605
Score = 66.2 bits (160), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 68/320 (21%), Positives = 136/320 (42%), Gaps = 7/320 (2%)
Query: 297 VKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAV 356
V +++ +Y + + + ++ K+ DEMR +G E ++ ++ + +K A
Sbjct: 271 VVYNKVTYTLLIELSVKNGKMNDVEKLFDEMRERGIESDIHVYTSLISWNCRKGNIKRAF 330
Query: 357 DLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLK 416
L++ PS + L+ V K +M ++ + G +T + N+++
Sbjct: 331 LLFDELTEKGLLPSSHTYGALIDG--VCKVGEMGAAEILMNEMQSKGVNITQVVFNTLIN 388
Query: 417 ALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDV 476
G + E + I ME+ GF A + IA + + DEA +++ M G +
Sbjct: 389 GYCRKGMIDEASMIYDVMEKKGFQADVFTCNTIASCFNRLKRYDEAKQWLFRMMEGGVRL 448
Query: 477 GDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKF 536
+ +LI +C G++++A F +M KE +A ++++ YC + + +A K
Sbjct: 449 STVSYTNLIDVYCKEGNVEEAKRLFVEMSSKEVQPNA-ITYNVMIYAYCKQGKVKEARKL 507
Query: 537 VHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPF---IKYVS 593
N ++ + P TY LI + +A+ L M G + I +S
Sbjct: 508 WAN-MKANGMDPDSYTYTSLIHGECIADNVDEAMRLFSEMGLKGLDQNSVTYTVMISGLS 566
Query: 594 KSGTSDDAIAFLKGMTSKRF 613
K+G SD+A + K +
Sbjct: 567 KAGKSDEAFGLYDEIKRKGY 586
Score = 46.6 bits (109), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 51/261 (19%), Positives = 111/261 (42%), Gaps = 6/261 (2%)
Query: 322 KVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKI 381
+V D M KG ++ +C+ L +R + ++ + + K +V T ++ +
Sbjct: 156 RVFDYMVKKGLSIDERSCIVFLVAAKKRRRIDLCLEFFRRMVDSGVKITVYSLTIVVEGL 215
Query: 382 VVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIA 441
+++ K+++ F G N+++ A + KILK M++ G +
Sbjct: 216 CRRGEVEKS--KKLIKEFSGKGIKPEAYTYNTIINAYLKHRDFSGVEKILKVMKKDGVVY 273
Query: 442 SSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCF 501
+ + + GK ++ + D M G + ++ SLI +C G++ +A F
Sbjct: 274 NKVTYTLLIELSVKNGKMNDVEKLFDEMRERGIESDIHVYTSLISWNCRKGNIKRAFLLF 333
Query: 502 QKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLL 561
++ EK G + + L++ C K + A + + N ++ + + LI N
Sbjct: 334 DELTEK-GLLPSSHTYGALIDGVC-KVGEMGAAEILMNEMQSKGVNITQVVFNTLI-NGY 390
Query: 562 VQRGFKDALSLLC-LMKDHGF 581
++G D S++ +M+ GF
Sbjct: 391 CRKGMIDEASMIYDVMEKKGF 411
Score = 43.5 bits (101), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 69/345 (20%), Positives = 127/345 (36%), Gaps = 46/345 (13%)
Query: 166 TYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRNKMTEKFEKEGLESDLEKLKGIF 225
TYN ++ H ++ VMKK G + E K G +D+EKL
Sbjct: 242 TYNTIINAYLKHRDFSGVEKILKVMKKDGVVYNKVTYTLLIELSVKNGKMNDVEKLFDEM 301
Query: 226 ATGSIDNSIEKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKAL 285
I++ I S I W R N+ K+A
Sbjct: 302 RERGIESDIHVYTSLIS-------W------NCRKGNI------------------KRAF 330
Query: 286 IFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGR 345
+ F E G + +Y A+ + + + +++EM+SKG + ++
Sbjct: 331 LLFDELTEKGLLPSSH-TYGALIDGVCKVGEMGAAEILMNEMQSKGVNITQVVFNTLING 389
Query: 346 FSERNMVKEAVDLYEFAMACKNKPSVNCCTFL------LRKIVVSKQLDMRLFSKVVRVF 399
+ + M+ EA +Y+ + V C + L++ +KQ R+
Sbjct: 390 YCRKGMIDEASMIYDVMEKKGFQADVFTCNTIASCFNRLKRYDEAKQWLFRMM------- 442
Query: 400 RENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKK 459
E G L+ +++ G + E ++ M ++ + + + GK
Sbjct: 443 -EGGVRLSTVSYTNLIDVYCKEGNVEEAKRLFVEMSSKEVQPNAITYNVMIYAYCKQGKV 501
Query: 460 DEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKM 504
EA + +M+A+G D + SLI G C+A ++D+A F +M
Sbjct: 502 KEARKLWANMKANGMDPDSYTYTSLIHGECIADNVDEAMRLFSEM 546
>gi|449461223|ref|XP_004148341.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g18940-like [Cucumis sativus]
gi|449507064|ref|XP_004162923.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g18940-like [Cucumis sativus]
Length = 844
Score = 66.2 bits (160), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 72/338 (21%), Positives = 144/338 (42%), Gaps = 17/338 (5%)
Query: 252 DDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEE---SGFVKHDESSYNAMA 308
D V+ +L ++++ L+K +D LG + ++A++ F W SG VK D + M
Sbjct: 150 DSVKSELLEVDIV---SLLK-ALDVLG-KSERAILLFEWVVSNSVSGDVKLDSKAVELMI 204
Query: 309 SVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNK 368
+LGRE K+LD++ Y +++ C +L +S K+A+ ++E C
Sbjct: 205 RILGRESKYSIALKLLDKIPIDKYSLDVRACTTILHAYSRNGKYKQAIAMFERMKDCGLS 264
Query: 369 PSVNCCTFLLRKIVVSKQLDMRLFSKVVRVF---RENGNVLTDAMLNSVLKALISVGRMG 425
PS+ T+ + V K R + K++ + R G + ++V+ A G +
Sbjct: 265 PSL--VTYNVMLDVYGKM--GRSWDKILDLLDEMRNEGLQFDEFTCSTVISACGREGLIN 320
Query: 426 ECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLI 485
E + ++ G+ + + + AG EA + ME + + + L+
Sbjct: 321 EAKEFFVELKSSGYEPGTVTYNALLQVFGKAGIYSEALNILKEMEDNNCTLDSVTYNELV 380
Query: 486 KGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYD 545
+ AG ++ A M K G ++N Y + + A + + N +++
Sbjct: 381 AAYVRAGFYEEGATVIDTMTRK-GVMPNAVTYTTVINAYGRAGKEVKALQ-LFNQMKKSG 438
Query: 546 LKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPP 583
P TY ++ L + ++ + +L M+ +G PP
Sbjct: 439 CVPNVCTYNSILALLGKKSRSEEMIKILSDMRINGCPP 476
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 74/341 (21%), Positives = 136/341 (39%), Gaps = 47/341 (13%)
Query: 282 KKALIFFRWAEESGFVKHDESSYNAMASVLGRED-CIDRFWKVLDEMRSKGYEMEMETCV 340
K+A+ F ++ G + +YN M V G+ D+ +LDEMR++G + + TC
Sbjct: 249 KQAIAMFERMKDCG-LSPSLVTYNVMLDVYGKMGRSWDKILDLLDEMRNEGLQFDEFTCS 307
Query: 341 KVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFR 400
V+ ++ EA + + + +P LL+ V K ++S+ + + +
Sbjct: 308 TVISACGREGLINEAKEFFVELKSSGYEPGTVTYNALLQ--VFGKA---GIYSEALNILK 362
Query: 401 E---NGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAG 457
E N L N ++ A + G E ++ M G + ++ + + AG
Sbjct: 363 EMEDNNCTLDSVTYNELVAAYVRAGFYEEGATVIDTMTRKGVMPNAVTYTTVINAYGRAG 422
Query: 458 KKDEANEFMDHMEASG--------------------SDVGDKMWVSLIKGHCVAGDL--- 494
K+ +A + + M+ SG S+ K+ + C +
Sbjct: 423 KEVKALQLFNQMKKSGCVPNVCTYNSILALLGKKSRSEEMIKILSDMRINGCPPNRITWN 482
Query: 495 -------DKAADCFQKMVEKE----GTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVRE 543
DK F V +E G + L++ Y +DA K +++ + +
Sbjct: 483 TLLAMCGDKGKHKFVNHVFREMKNCGFEPGKDTFNTLISAYGRCGSELDAAK-MYDEMMK 541
Query: 544 YDLKPWHTTYEELIKNLLVQRG-FKDALSLLCLMKDHGFPP 583
P TTY L+ N L +RG +K A S+L M++ GF P
Sbjct: 542 AGFTPCATTYNALL-NALARRGDWKAAESVLLDMRNKGFKP 581
Score = 47.0 bits (110), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 113/524 (21%), Positives = 206/524 (39%), Gaps = 40/524 (7%)
Query: 119 KQLELSGVVFTHEMVLKVLKNLESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVGVHG 178
K LS + T+ ++L V + S D+ + + E + T + ++ G G
Sbjct: 259 KDCGLSPSLVTYNVMLDVYGKMGRSWDKILDLLDE-MRNEGLQFDEFTCSTVISACGREG 317
Query: 179 LVQEFWGLVDVMKKKGYGVASHVRNKMTEKFEKEGLESD-LEKLKGIFATGSIDNSIEKV 237
L+ E +K GY + N + + F K G+ S+ L LK + +S+
Sbjct: 318 LINEAKEFFVELKSSGYEPGTVTYNALLQVFGKAGIYSEALNILKEMEDNNCTLDSV-TY 376
Query: 238 ASRICKVVRSDIW--GDDVERQLRDLNVTFSNDLVKFVVDKLGDEPK--KALIFFRWAEE 293
+ VR+ + G V + V + V++ G K KAL F ++
Sbjct: 377 NELVAAYVRAGFYEEGATVIDTMTRKGVMPNAVTYTTVINAYGRAGKEVKALQLFNQMKK 436
Query: 294 SGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVK 353
SG V + +YN++ ++LG++ + K+L +MR G T +L ++ K
Sbjct: 437 SGCVP-NVCTYNSILALLGKKSRSEEMIKILSDMRINGCPPNRITWNTLLAMCGDKGKHK 495
Query: 354 EAVDLYEFAMACKNKPSVNCCTFLLRKI-VVSKQLDMRLFSKVVRVFRENGNVLTDAMLN 412
++ C +P + L+ +LD +K+ + G N
Sbjct: 496 FVNHVFREMKNCGFEPGKDTFNTLISAYGRCGSELDA---AKMYDEMMKAGFTPCATTYN 552
Query: 413 SVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEAS 472
++L AL G +L M GF + S + + G + +E
Sbjct: 553 ALLNALARRGDWKAAESVLLDMRNKGFKPNETSFSLMLHCYAKGGN-------VRGLERI 605
Query: 473 GSDVGDKM----WVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLV-NTYCS- 526
G D+ D WV L++ +A +A ++ E+ GY D+++ N+ S
Sbjct: 606 GKDIYDGQIFPSWV-LLRTLILANFKCRAVRGMERAFEE--LMKNGYKPDMVIFNSMLSI 662
Query: 527 --KNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRG--FKDALSLLCLMKDHGFP 582
KN + + + + +RE L+P TY L+ N+ +RG +K L L+K P
Sbjct: 663 FAKNNMYERAQKMLDLIRESGLQPDLVTYNSLM-NMYARRGECWKAEEILKGLIKSGESP 721
Query: 583 PFV--DPFIKYVSKSGTSDDAIAFLKGMTSKRFPSMSVVLCLFA 624
V + IK + G +AI + MT++ + C+F
Sbjct: 722 DLVSYNTIIKGFCRQGLMQEAIRVMSEMTTR-----GICPCIFT 760
>gi|449463386|ref|XP_004149415.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g65560-like [Cucumis sativus]
Length = 830
Score = 66.2 bits (160), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 121/587 (20%), Positives = 230/587 (39%), Gaps = 64/587 (10%)
Query: 78 PNFRNPMICSYSSEPAMEQKESDFTVVSDIFYKFS-DVNDISKQLELSGVVFTHEMVLKV 136
P+ +P+ S ++ P E T++S ++ S ++ +S +L+ VV +L+
Sbjct: 32 PHPSSPLPISSTTNPFPELVSKISTILSSPKWEHSSELCHLSPKLKPHHVV----NILQT 87
Query: 137 LKNLESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLVDVMKKKGYG 196
KN D RFF W+ ++ + + ML +++ + +
Sbjct: 88 HKN----TDSVLRFFFWISRRKFFKHDMSCFVSMLN---------------RLVRDRLFA 128
Query: 197 VASHVRNKMTEKFEKEG----LESDLEKLKGIFATGSIDNSIEKVASRICKV----VRSD 248
A HVR M + EG + L ++ + G S + ++ K + D
Sbjct: 129 PADHVRILMIKSCRNEGEVKRVTQFLSEINSKYDFGYTLCSFTTLLIQLGKFDMVDLARD 188
Query: 249 IWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALI--FFRW-AEESGFVKHDESSYN 305
++ + +R +TF N ++ + K + K ++ FR+ A + F +Y
Sbjct: 189 MYIKMLNSGIRPSLLTF-NTMINILCKKGRVQEAKLIMSHIFRYDAYPNAF------TYT 241
Query: 306 AMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMAC 365
++ R +D + + D M G + T ++ ++EA+D+ E +
Sbjct: 242 SLILGHCRNHNLDLAFAMFDRMVKDGCDPNSVTYSTLINGLCSEGRLEEAMDMLEEMVQK 301
Query: 366 KNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVF---RENGNVLTDAMLNSVLKALISVG 422
+P+V T L + D S+ V + ++ G V +++ L G
Sbjct: 302 GIEPTVYTYTIPLVSLC-----DAGCSSEAVELLGKMKKRGCVPNIQTFTALISGLSRDG 356
Query: 423 RMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWV 482
+ + M G + ++ + + +L G+ + A M + GS + +
Sbjct: 357 KFEIAIGLYHKMLADGLVPTTVTYNALINQLCVEGRFETAFTIFKWMLSHGSLPSTQTYN 416
Query: 483 SLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVR 542
+IK C+ GD+ KA F KM+ K G+S + L+ YC + +A + + ++
Sbjct: 417 EIIKCFCLMGDIQKAMVIFDKML-KAGSSPNVITYNTLIYGYCKQGNLNNAMRLLE-IMK 474
Query: 543 EYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPP-------FVDPFIKYVSKS 595
LKP TY ELI + A SL M +HG P +D +
Sbjct: 475 GNGLKPDAWTYTELISGFSRGGKLEHATSLFYGMMEHGISPNHVTYTAIIDGYFNLAK-- 532
Query: 596 GTSDDAIA-FLKGMTSKRFPSMSVVLCLFAAFFQARRHSEAQDLLSK 641
DDA+A F K + S PS + + F + SEA++ K
Sbjct: 533 --VDDALALFWKMVESGNLPSSQTYNVMISGFSKTNSISEAENFCGK 577
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 69/314 (21%), Positives = 124/314 (39%), Gaps = 11/314 (3%)
Query: 303 SYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFA 362
+Y+ + + L E ++ +L+EM KG E + T L + EAV+L
Sbjct: 274 TYSTLINGLCSEGRLEEAMDMLEEMVQKGIEPTVYTYTIPLVSLCDAGCSSEAVELLGKM 333
Query: 363 MACKNKPSVNCCTFLLRKIVVSKQLDMR--LFSKVVRVFRENGNVLTDAMLNSVLKALIS 420
P++ T L+ + + ++ L+ K++ +G V T N+++ L
Sbjct: 334 KKRGCVPNIQTFTALISGLSRDGKFEIAIGLYHKML----ADGLVPTTVTYNALINQLCV 389
Query: 421 VGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKM 480
GR I K M G + S+ ++I G +A D M +GS
Sbjct: 390 EGRFETAFTIFKWMLSHGSLPSTQTYNEIIKCFCLMGDIQKAMVIFDKMLKAGSSPNVIT 449
Query: 481 WVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNC 540
+ +LI G+C G+L+ A + M + G + L++ + + A +
Sbjct: 450 YNTLIYGYCKQGNLNNAMRLLEIM-KGNGLKPDAWTYTELISGFSRGGKLEHATSLFYG- 507
Query: 541 VREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPF---IKYVSKSGT 597
+ E+ + P H TY +I DAL+L M + G P + I SK+ +
Sbjct: 508 MMEHGISPNHVTYTAIIDGYFNLAKVDDALALFWKMVESGNLPSSQTYNVMISGFSKTNS 567
Query: 598 SDDAIAFLKGMTSK 611
+A F M +
Sbjct: 568 ISEAENFCGKMVKQ 581
Score = 43.1 bits (100), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 61/303 (20%), Positives = 109/303 (35%), Gaps = 5/303 (1%)
Query: 282 KKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVK 341
+ A F+W G + ++ YN + I + + D+M G + T
Sbjct: 394 ETAFTIFKWMLSHGSLPSTQT-YNEIIKCFCLMGDIQKAMVIFDKMLKAGSSPNVITYNT 452
Query: 342 VLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRE 401
++ + ++ + A+ L E KP T L+ +L+ + + E
Sbjct: 453 LIYGYCKQGNLNNAMRLLEIMKGNGLKPDAWTYTELISGFSRGGKLEHA--TSLFYGMME 510
Query: 402 NGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDE 461
+G +++ ++ ++ + + M E G + SS + + S E
Sbjct: 511 HGISPNHVTYTAIIDGYFNLAKVDDALALFWKMVESGNLPSSQTYNVMISGFSKTNSISE 570
Query: 462 ANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLV 521
A F M G + S I G C G A F +M EK Y L+
Sbjct: 571 AENFCGKMVKQGLLPNVITYTSFIDGLCRNGRTGLAFKIFHEM-EKRNYFPNLYTYSSLI 629
Query: 522 NTYCSKNRAIDACKF-VHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHG 580
C + RA DA + + + Y +P TY L+K L + +A L+ M+ G
Sbjct: 630 YGLCQEGRAEDAEMYNLLARLTHYGCEPNVDTYTTLVKGLCGEGRCYEADQLVVSMQKKG 689
Query: 581 FPP 583
P
Sbjct: 690 LQP 692
>gi|414883768|tpg|DAA59782.1| TPA: hypothetical protein ZEAMMB73_461975 [Zea mays]
Length = 683
Score = 66.2 bits (160), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 94/405 (23%), Positives = 155/405 (38%), Gaps = 41/405 (10%)
Query: 244 VVRSDIWGDDV---ERQLRDL--NVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVK 298
+ R+D D + R LRD TF+ + + +LG AL R G V
Sbjct: 152 LARADCHADALLLYRRMLRDRVPPTTFTFGVAARALCRLG-RAGDALALLRGMARHGCVP 210
Query: 299 HDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDL 358
D Y + L + + +LDEM G ++ T ++ V+EA L
Sbjct: 211 -DAVLYQTVIHALVAQGGVAEAAMLLDEMLLMGCAADVNTFNDLVLGLCGLGRVREAARL 269
Query: 359 YEFAMACKNKPSVNCCTFLLRKIVVSKQLD-------------MRLFSKVVRVFRENGNV 405
+ M PSV FLL+ + ++Q D + + + V+R G +
Sbjct: 270 VDRMMTQGCMPSVVTYGFLLQGLCRTRQADEACAMLGRLPEVNVVMLNTVIRGCLTEGKL 329
Query: 406 LTDA----MLNS------------VLKALISVGRMGECNKILKAMEEGGFIASSNMKSKI 449
M+ S ++ L +GR G ++L MEE G + S +
Sbjct: 330 ARATELYEMMGSKGCPPDVHTYSILMHGLCKLGRFGSAVRMLDEMEEKGCAPNIVTYSTL 389
Query: 450 AFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEG 509
G D+A +D M A G + + + +I C G LD+A Q+M + +G
Sbjct: 390 LHSFCRNGMWDDARAMLDQMLAKGFSMNSQGYNGIIYALCKDGKLDQATRLVQEM-KSQG 448
Query: 510 TSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDA 569
+ ++ C+ + +A N + E + TY LI LL +++
Sbjct: 449 CKPDICTYNTMIYHLCNNDLMEEAEHIFRNLIEE-GVVANGITYNTLIHALLRNGRWQEG 507
Query: 570 LSLLCLMKDHGFPPFV---DPFIKYVSKSGTSDDAIAFLKGMTSK 611
L L M HG V + IK + K G D ++A L+ M +K
Sbjct: 508 LRLASEMLLHGCQLDVISYNGLIKALCKEGNVDRSMALLEEMVTK 552
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 68/301 (22%), Positives = 120/301 (39%), Gaps = 14/301 (4%)
Query: 322 KVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMA---CKNKPSVNCCTFLL 378
++LDEM KG + T +L F M +A + + +A N N + L
Sbjct: 369 RMLDEMEEKGCAPNIVTYSTLLHSFCRNGMWDDARAMLDQMLAKGFSMNSQGYNGIIYAL 428
Query: 379 RKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGG 438
K +LD +++V+ + G N+++ L + M E I + + E G
Sbjct: 429 CK---DGKLDQA--TRLVQEMKSQGCKPDICTYNTMIYHLCNNDLMEEAEHIFRNLIEEG 483
Query: 439 FIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAA 498
+A+ + + L G+ E M G + + LIK C G++D++
Sbjct: 484 VVANGITYNTLIHALLRNGRWQEGLRLASEMLLHGCQLDVISYNGLIKALCKEGNVDRSM 543
Query: 499 DCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIK 558
++MV K G ++ ++L+N C + DA + + + L P TY LI
Sbjct: 544 ALLEEMVTK-GIKPNNFSYNMLINELCKAGKVRDALELSKEMLNQ-GLTPDIVTYNTLIN 601
Query: 559 NLLVQRGFKDALSLLCLMKDHGFPPFV---DPFIKYVSKSGTSDDAIAFL-KGMTSKRFP 614
L AL+LL + + P + + I + K DDA L K ++ P
Sbjct: 602 GLCKVGWTHAALNLLEKLPNENVHPDIVTYNILISWHCKVRLLDDAAMLLDKAISGGIVP 661
Query: 615 S 615
+
Sbjct: 662 N 662
Score = 42.0 bits (97), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 49/225 (21%), Positives = 86/225 (38%), Gaps = 15/225 (6%)
Query: 395 VVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLS 454
++R +G V + +V+ AL++ G + E +L M G A N + + L
Sbjct: 199 LLRGMARHGCVPDAVLYQTVIHALVAQGGVAEAAMLLDEMLLMGCAADVNTFNDLVLGLC 258
Query: 455 SAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAG 514
G+ EA +D M G + L++G C D+A ++ E
Sbjct: 259 GLGRVREAARLVDRMMTQGCMPSVVTYGFLLQGLCRTRQADEACAMLGRLPEVN------ 312
Query: 515 YAIDLLVNTY---CSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALS 571
+++NT C + ++ + P TY L+ L F A+
Sbjct: 313 ---VVMLNTVIRGCLTEGKLARATELYEMMGSKGCPPDVHTYSILMHGLCKLGRFGSAVR 369
Query: 572 LLCLMKDHGFPPFV---DPFIKYVSKSGTSDDAIAFLKGMTSKRF 613
+L M++ G P + + ++G DDA A L M +K F
Sbjct: 370 MLDEMEEKGCAPNIVTYSTLLHSFCRNGMWDDARAMLDQMLAKGF 414
>gi|255580733|ref|XP_002531188.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223529229|gb|EEF31203.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 619
Score = 66.2 bits (160), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 71/353 (20%), Positives = 147/353 (41%), Gaps = 9/353 (2%)
Query: 290 WAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSER 349
+ EE GF S+N + V+ + D WK+ + M K T ++ +
Sbjct: 189 YLEEHGFFL-SLLSFNTLIHVVQKSDQYPLVWKIYEHMIHKRIYPNEATIRTMINALCKE 247
Query: 350 NMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDA 409
++ VD+ + + +P V ++ +I+ ++D+ + +++ + +L
Sbjct: 248 GKLQMFVDILDRIHGKRCRPLVIINACMVFRILQEGRVDVGI--GILKGMLQKNMILDTV 305
Query: 410 MLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHM 469
+ ++ A + +G + ++ +AM + GF A+S + + + + GK ++AN+ M
Sbjct: 306 AYSLIVFAKVRLGNLDSALEVYEAMLKRGFNANSFVHTVLIGAYCNGGKIEKANQLFGEM 365
Query: 470 EASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNR 529
G + D+ + LI+G AG +++ F+KM+E+ G + A + ++ C
Sbjct: 366 GTMGLEPYDETFNFLIEGCAKAGRVEECLSYFEKMIER-GLVPSLLAFNKMIAKLCETGE 424
Query: 530 AIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPP---FVD 586
A F+ + + P TTY L+ ++ L L M+ P
Sbjct: 425 VNQANTFLTRLL-DKGFSPDETTYSYLMTGYERDNQIQEVLKLYYEMEYRPLSPGLLVFT 483
Query: 587 PFIKYVSKSGTSDDAIAFLKGMTSKRF-PSMSVVLCLFAAFFQARRHSEAQDL 638
P I+ + G + A +L+ M + PS V L A + + A L
Sbjct: 484 PLIRSLCHCGKLEQAEKYLRIMKGRSLNPSQQVYEALIAGHLEKSDTARALQL 536
Score = 45.4 bits (106), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 40/176 (22%), Positives = 70/176 (39%), Gaps = 2/176 (1%)
Query: 408 DAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMD 467
D N +++ GR+ EC + M E G + S +K+ +L G+ ++AN F+
Sbjct: 374 DETFNFLIEGCAKAGRVEECLSYFEKMIERGLVPSLLAFNKMIAKLCETGEVNQANTFLT 433
Query: 468 HMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSK 527
+ G + + L+ G+ + + + +M E S L+ + C
Sbjct: 434 RLLDKGFSPDETTYSYLMTGYERDNQIQEVLKLYYEM-EYRPLSPGLLVFTPLIRSLCHC 492
Query: 528 NRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPP 583
+ A K++ ++ L P YE LI L + AL L M GF P
Sbjct: 493 GKLEQAEKYL-RIMKGRSLNPSQQVYEALIAGHLEKSDTARALQLYNEMISKGFTP 547
>gi|297599556|ref|NP_001047351.2| Os02g0601600 [Oryza sativa Japonica Group]
gi|255671066|dbj|BAF09265.2| Os02g0601600 [Oryza sativa Japonica Group]
Length = 466
Score = 66.2 bits (160), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 77/344 (22%), Positives = 143/344 (41%), Gaps = 34/344 (9%)
Query: 262 NVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFW 321
+ + ++V ++ K GD+ K AL FF+WA+ +H + N M +LG+ ID+ W
Sbjct: 43 GIRLTGNIVDTLLFKFGDDWKSALGFFQWAQSRDDYRHTAYACNRMVDLLGKMRQIDQMW 102
Query: 322 KVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLY---EFAMACKNKPSVNCCTFLL 378
++L +M +G + +ET K + R + K+ V L+ E +N ++N +L
Sbjct: 103 ELLSDMHGRGL-VTVETVAKSIRRLAGARRWKDVVLLFDKLEDMGLERNTETMNVLLDVL 161
Query: 379 ---RKIVVSKQL----------DMRLFSKVVRVF----------------RENGNVLTDA 409
RKI V++++ D F+ V + + G +
Sbjct: 162 CKERKIEVAREVFAVLSPHIPPDAYTFNIFVHGWCSIRRIDEAMWTIEEMKRRGFPPSVI 221
Query: 410 MLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHM 469
+VL+A ++L +M G + + I L+ + +EA M
Sbjct: 222 TYTTVLEAYCKQRNFRRVYEVLDSMGSQGCHPNVITYTMIMTSLAKCERFEEALSVSHRM 281
Query: 470 EASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNR 529
++SG + SLI +G L +A+ F+ + G SH + +++ +C R
Sbjct: 282 KSSGCKPDTLFYNSLINLLGKSGHLFEASQVFRVEMPMNGVSHNLATYNTMISIFCYYGR 341
Query: 530 AIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLL 573
DA + + KP +Y L++ L +RG D + L
Sbjct: 342 DDDALNVLKE-MEAQSCKPDIQSYRPLLRLFLSRRGQADTVRHL 384
>gi|125540181|gb|EAY86576.1| hypothetical protein OsI_07956 [Oryza sativa Indica Group]
gi|125582780|gb|EAZ23711.1| hypothetical protein OsJ_07414 [Oryza sativa Japonica Group]
gi|215768726|dbj|BAH00955.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 500
Score = 66.2 bits (160), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 76/341 (22%), Positives = 142/341 (41%), Gaps = 34/341 (9%)
Query: 262 NVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFW 321
+ + ++V ++ K GD+ K AL FF+WA+ +H + N M +LG+ ID+ W
Sbjct: 77 GIRLTGNIVDTLLFKFGDDWKSALGFFQWAQSRDDYRHTAYACNRMVDLLGKMRQIDQMW 136
Query: 322 KVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLY---EFAMACKNKPSVNCCTFLL 378
++L +M +G + +ET K + R + K+ V L+ E +N ++N +L
Sbjct: 137 ELLSDMHGRGL-VTVETVAKSIRRLAGARRWKDVVLLFDKLEDMGLERNTETMNVLLDVL 195
Query: 379 ---RKIVVSKQL----------DMRLFSKVVRVF----------------RENGNVLTDA 409
RKI V++++ D F+ V + + G +
Sbjct: 196 CKERKIEVAREVFAVLSPHIPPDAYTFNIFVHGWCSIRRIDEAMWTIEEMKRRGFPPSVI 255
Query: 410 MLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHM 469
+VL+A ++L +M G + + I L+ + +EA M
Sbjct: 256 TYTTVLEAYCKQRNFRRVYEVLDSMGSQGCHPNVITYTMIMTSLAKCERFEEALSVSHRM 315
Query: 470 EASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNR 529
++SG + SLI +G L +A+ F+ + G SH + +++ +C R
Sbjct: 316 KSSGCKPDTLFYNSLINLLGKSGHLFEASQVFRVEMPMNGVSHNLATYNTMISIFCYYGR 375
Query: 530 AIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDAL 570
DA + + KP +Y L++ L +RG D +
Sbjct: 376 DDDALNVLKE-MEAQSCKPDIQSYRPLLRLFLSRRGQADTV 415
>gi|255556466|ref|XP_002519267.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223541582|gb|EEF43131.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 665
Score = 65.9 bits (159), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 88/371 (23%), Positives = 147/371 (39%), Gaps = 34/371 (9%)
Query: 303 SYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDL---Y 359
+YN + L + + +D K+L EM +KG E ++ + V+ S+ V+EA +L +
Sbjct: 186 TYNILLKALCKNNRVDGACKLLVEMSNKGCEPDVVSYTTVISSMSKLGKVEEARELSIRF 245
Query: 360 EFAMACKNKPSVNCC-------TFLLRKIVVSKQLDMRL--FSKVVRVFRENGNV-LTDA 409
+ ++ N C FLL +V K +D + +S V+ GNV L A
Sbjct: 246 QPNVSVYNALINGFCREYKVKEVFLLLGQMVEKGIDPNVITYSTVISSLSGIGNVELALA 305
Query: 410 M---------------LNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLS 454
+ S++K GR+ E I M E GF + + + L
Sbjct: 306 VWAKMFVRGCSPNVYTFTSLMKGYFMRGRVLEALNIWNRMAEEGFEPNVVAYNTLIHGLC 365
Query: 455 SAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAG 514
S GK EA ME +G + +LI G AGDL A++ + KM+ G
Sbjct: 366 SHGKMGEAVSVSSKMERNGCSPNVSTYGALIDGFAKAGDLVGASEIWNKMM-TNGCIPNV 424
Query: 515 YAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLC 574
+VN C + A + + + P T+ IK L + A++L C
Sbjct: 425 VVYTSMVNVLCRSSMFSQAWSLIEKMSTD-NCPPNTVTFNTFIKGLCCSGRVECAINLFC 483
Query: 575 LMKDHGFPPFVDPF---IKYVSKSGTSDDAIAFLKGMTSKRFP-SMSVVLCLFAAFFQAR 630
M+ +G P + + + + K +A+ + M K ++ +F F
Sbjct: 484 QMEQYGCSPNIKTYNEVLDGLLKENRIKEALELVTEMEEKGMELNLVTYNTIFGGFCNVG 543
Query: 631 RHSEAQDLLSK 641
+ EA LL K
Sbjct: 544 KFEEALKLLGK 554
Score = 58.5 bits (140), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 83/398 (20%), Positives = 152/398 (38%), Gaps = 47/398 (11%)
Query: 287 FFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRF 346
+FR S +H + +Y M LGRE +D +L +M+ +G + + V+ +
Sbjct: 65 YFRSIANSKAFQHTQLTYQIMIEKLGRECDVDGVQYLLQQMKLEGISCSEDLFINVINTY 124
Query: 347 SERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDM--RLFSKVVRVFRENGN 404
+ ++A+ ++ +P+V LL ++ + M ++S + R +E N
Sbjct: 125 RRVGLAEQALKMFYRIREFGCQPTVKIYNHLLDAMLSENRFQMIEPIYSNMKRDGKEP-N 183
Query: 405 VLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANE 464
V T N +LKAL R+ K+L M G + + +S GK +EA E
Sbjct: 184 VYT---YNILLKALCKNNRVDGACKLLVEMSNKGCEPDVVSYTTVISSMSKLGKVEEARE 240
Query: 465 ------------------------------FMDHMEASGSDVGDKMWVSLIKGHCVAGDL 494
+ M G D + ++I G++
Sbjct: 241 LSIRFQPNVSVYNALINGFCREYKVKEVFLLLGQMVEKGIDPNVITYSTVISSLSGIGNV 300
Query: 495 DKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYE 554
+ A + KM + G S Y L+ Y + R ++A + N + E +P Y
Sbjct: 301 ELALAVWAKMFVR-GCSPNVYTFTSLMKGYFMRGRVLEALN-IWNRMAEEGFEPNVVAYN 358
Query: 555 ELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPFIKYVSKSGTSDDAIA----FLKGMTS 610
LI L +A+S+ M+ +G P V + + + D + + K MT+
Sbjct: 359 TLIHGLCSHGKMGEAVSVSSKMERNGCSPNVSTYGALIDGFAKAGDLVGASEIWNKMMTN 418
Query: 611 KRFPSMSVVLCLFAAFFQARRHSEAQDLLSK-----CP 643
P++ V + ++ S+A L+ K CP
Sbjct: 419 GCIPNVVVYTSMVNVLCRSSMFSQAWSLIEKMSTDNCP 456
>gi|224107981|ref|XP_002314676.1| predicted protein [Populus trichocarpa]
gi|222863716|gb|EEF00847.1| predicted protein [Populus trichocarpa]
Length = 555
Score = 65.9 bits (159), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 84/386 (21%), Positives = 162/386 (41%), Gaps = 57/386 (14%)
Query: 217 DLEKLKGIFATGSIDNSIEKVASRICKVVRSDIWGDD-VERQLRDLNVTFSNDLVKFVVD 275
++E K I + + + + A ++ ++++ +D V L + ++ ++DLV ++
Sbjct: 86 NIESHKNIASLSLLSEASDSDAHKVGEILKKHYLSEDAVVEALNESGISATHDLVSQLLK 145
Query: 276 KLGDEPKKALIFFRWAE-ESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEM 334
+ ++ AL F WA+ ++G+V H YN+M +LG+ W ++ EM +
Sbjct: 146 RFSNQWLIALGVFIWAKNQTGYV-HKPEIYNSMIDILGKSRKFSLMWDLVQEMSGLNGYV 204
Query: 335 EMETCVKVLGRFSERNMVKEAVD----LYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMR 390
+ T KV+ R EA+D L +F ++ K+ ++N +L + + R
Sbjct: 205 SLVTMGKVMKRLVRDGKYNEAIDAFRGLEKFGLS-KSTEAMNVLMDILAR-------NGR 256
Query: 391 LFSKVVRVFRENGNVLTDAMLNSVLKALISVGRM-GECNKILKAMEEGGFIASSNMKSKI 449
+ G + D ++L + RM G+ K ++ MEE GF N+ S
Sbjct: 257 VEDARAVALEFEGCLTLDYRSYNILSSGYCKARMFGDARKTMEEMEERGF--HPNVVSYT 314
Query: 450 AF-------------------------------------RLSSAGKKDEANEFMDHMEAS 472
AF L A + ++A E + ++ +
Sbjct: 315 AFIEAYGEQKDFRNVEIILNEMQEKGCPPDLITYTVYIRALGKARQINKALEICEEIKRN 374
Query: 473 GSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAID 532
G +G + + SLI C++G L A + F+ VEK+G +++ C+ ++
Sbjct: 375 GFVLGTQFYCSLIHSLCLSGRLKDAWNIFED-VEKQGVGRDLGMYKAMISAACALSQDES 433
Query: 533 ACKFVHNCVREYDLKPWHTTYEELIK 558
A K +H + E KP TY L+K
Sbjct: 434 ALKLLHK-MEEDSCKPDVQTYAPLLK 458
Score = 45.8 bits (107), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 89/467 (19%), Positives = 172/467 (36%), Gaps = 38/467 (8%)
Query: 95 EQKESDFTVVSDIFYK-FSDVNDISKQLELSGVVFTHEMVLKVLKNLESSPDEARRFFNW 153
E +SD V +I K + + + + L SG+ TH++V ++LK + A F W
Sbjct: 101 EASDSDAHKVGEILKKHYLSEDAVVEALNESGISATHDLVSQLLKRFSNQWLIALGVFIW 160
Query: 154 VLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRNKMTEKFEKEG 213
+ + YN M+ I+G W LV M G+ +V
Sbjct: 161 AKNQTGYVHKPEIYNSMIDILGKSRKFSLMWDLVQEMS----GLNGYV-----------S 205
Query: 214 LESDLEKLKGIFATGSIDNSIEKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFV 273
L + + +K + G + +I D R L ++ S + + +
Sbjct: 206 LVTMGKVMKRLVRDGKYNEAI------------------DAFRGLEKFGLSKSTEAMNVL 247
Query: 274 VDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYE 333
+D L + E G + D SYN ++S + K ++EM +G+
Sbjct: 248 MDILARNGRVEDARAVALEFEGCLTLDYRSYNILSSGYCKARMFGDARKTMEEMEERGFH 307
Query: 334 MEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFS 393
+ + + + E+ + + P + T +R + ++Q++ L
Sbjct: 308 PNVVSYTAFIEAYGEQKDFRNVEIILNEMQEKGCPPDLITYTVYIRALGKARQINKAL-- 365
Query: 394 KVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRL 453
++ + NG VL S++ +L GR+ + I + +E+ G M +
Sbjct: 366 EICEEIKRNGFVLGTQFYCSLIHSLCLSGRLKDAWNIFEDVEKQGVGRDLGMYKAMISAA 425
Query: 454 SSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHA 513
+ + + A + + ME + + L+K C + M E + S
Sbjct: 426 CALSQDESALKLLHKMEEDSCKPDVQTYAPLLKMCCRKKSMKMLKFLLNHMFEND-VSID 484
Query: 514 GYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNL 560
DLLV+ + + AC F V + + P TY+ L++ L
Sbjct: 485 IVTYDLLVHGLRKQGKLKYACFFFQEAVLK-GMVPCDKTYKILLEEL 530
>gi|255660916|gb|ACU25627.1| pentatricopeptide repeat-containing protein [Lantana canescens]
Length = 484
Score = 65.9 bits (159), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 88/393 (22%), Positives = 159/393 (40%), Gaps = 53/393 (13%)
Query: 258 LRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCI 317
+R+L +F +LV V+ + AL FFRW E S +H+ ++ + +LGR +
Sbjct: 3 IRNLVPSFDQELVYNVLHG-AKTSEHALQFFRWVERSNLFEHNRDTHLKIIEILGRALKL 61
Query: 318 DRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFL 377
+ +L +M KG E + + V ++ + + +V+E+V
Sbjct: 62 NHARCILLDMPKKGLEWDEDMWVLMIDSYGKAGIVQESV--------------------- 100
Query: 378 LRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEG 437
+LF K+ E G T +++ K ++ GR + M
Sbjct: 101 ------------KLFQKM----EELGVERTIKSYDALFKVIMRRGRFMMAKRYFNKMLSE 144
Query: 438 GFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKA 497
G + + + + + +GK D AN F + M++ + ++I G +D+A
Sbjct: 145 GIEPTRHTFNVLIWGFFLSGKVDTANRFFEDMKSREISPDVVTYNTMINGCYRVKKMDEA 204
Query: 498 ADCFQKM----VEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTY 553
F +M +E S+ L+ Y S ++ DA + V ++ Y +KP TY
Sbjct: 205 EKYFVEMKGRNIEPTVVSYT-----TLIKGYVSVDQVDDALRLVEE-MKGYGIKPNAITY 258
Query: 554 EELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDP-FIKYVS---KSGTSDDAIAFLKGMT 609
L+ L +A S+L M D P + F++ +S ++G A LK M
Sbjct: 259 STLLPGLCDAGKMSEAQSILKEMVDKYIAPKDNSIFMRLISSQCEAGNLGAAADVLKAMI 318
Query: 610 SKRFPSMSVVL-CLFAAFFQARRHSEAQDLLSK 641
P+ + L F +A +H +A LL K
Sbjct: 319 RLSVPTEAGHYGVLIENFCKAGQHDKAVKLLDK 351
Score = 48.1 bits (113), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 73/309 (23%), Positives = 128/309 (41%), Gaps = 41/309 (13%)
Query: 312 GREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKN-KPS 370
G+ D +RF+ ++M+S+ ++ T ++ + EA + Y M +N +P+
Sbjct: 164 GKVDTANRFF---EDMKSREISPDVVTYNTMINGCYRVKKMDEA-EKYFVEMKGRNIEPT 219
Query: 371 VNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKI 430
V T L++ V Q+D L ++V + G +++L L G+M E I
Sbjct: 220 VVSYTTLIKGYVSVDQVDDAL--RLVEEMKGYGIKPNAITYSTLLPGLCDAGKMSEAQSI 277
Query: 431 LKAMEEGGFIASSNMKSKIAFRLSS----AGKKDEANEFMDHMEASGSDVGDKMWVSLIK 486
LK M + +IA + + I RL S AG A + + M + LI+
Sbjct: 278 LKEMVDK-YIAPKD--NSIFMRLISSQCEAGNLGAAADVLKAMIRLSVPTEAGHYGVLIE 334
Query: 487 GHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDL 546
C AG DKA K++EK D+++ + + A +N + EY
Sbjct: 335 NFCKAGQHDKAVKLLDKLIEK----------DIILRPQSTLHMEPSA----YNPMIEYLC 380
Query: 547 KPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPFIKYVSKSGTSDDAIAFLK 606
T E + L++ G +D+ +L L++ H S+ G+ D A LK
Sbjct: 381 NNGQTAKAEALVRQLLKLGVQDSTALNTLIRGH-------------SQEGSPDSAFELLK 427
Query: 607 GMTSKRFPS 615
M ++ S
Sbjct: 428 IMLRRKVDS 436
>gi|297850744|ref|XP_002893253.1| hypothetical protein ARALYDRAFT_313173 [Arabidopsis lyrata subsp.
lyrata]
gi|297339095|gb|EFH69512.1| hypothetical protein ARALYDRAFT_313173 [Arabidopsis lyrata subsp.
lyrata]
Length = 1147
Score = 65.9 bits (159), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 86/400 (21%), Positives = 158/400 (39%), Gaps = 36/400 (9%)
Query: 268 DLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEM 327
DL+ V++ + +P+ A FF W + VK ++ AM +L D + + V +
Sbjct: 122 DLLIRVLNMIRVKPEIAFRFFNWIQRQSDVKQSRQAFAAMLEILAENDLMSEAYLVAE-- 179
Query: 328 RSKGYEMEMETCVKVLGRF----------------SERNMVKEAVDLYEFAMACKNKPSV 371
RS M + + G F ++++M ++ + +E + PSV
Sbjct: 180 RSINLGMHEIDDLLIDGNFDKLVALKLLDLLLWVYTKKSMAEKCLLSFEKMIRKGFLPSV 239
Query: 372 NCCTFLLRKIVVSKQLDMRLFSKVVRVFRE---NGNVLTDAMLNSVLKALISVGRMGECN 428
C +LR + D R+ +K V+ +G + T N++L + G + +
Sbjct: 240 RNCNIVLRVL-----RDSRMMNKAQEVYETMVMHGIMPTVITFNTMLDSCFKAGDLERVD 294
Query: 429 KILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGH 488
KI M+ S + + S +GK +EA F M+ SG V + LI+G+
Sbjct: 295 KIWLEMKRRNIEFSEVTYNILINGFSKSGKMEEARRFHGDMQRSGFPVTPYSFNPLIEGY 354
Query: 489 CVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKP 548
C G D+A +M+ G ++ + C R DA + + + P
Sbjct: 355 CKQGLFDEAWGVTDEMLNA-GIYPTTSTYNIYIRALCEFGRIDDARELLSSMA-----AP 408
Query: 549 WHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFV---DPFIKYVSKSGTSDDAIAFL 605
+Y L+ + R F +A L +K P + + I + +SG + A
Sbjct: 409 DVVSYNTLMHGYIKMRKFVEASLLFDDLKAGNINPSIVTYNTLIDGLCESGNLEGAQRLK 468
Query: 606 KGMTSKR-FPSMSVVLCLFAAFFQARRHSEAQDLLSKCPR 644
+ MTS+ +P + L F + S A ++ + R
Sbjct: 469 EEMTSQLIYPDVITYTTLLKGFVKNGNLSMATEIYDEMLR 508
Score = 47.4 bits (111), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 91/471 (19%), Positives = 190/471 (40%), Gaps = 22/471 (4%)
Query: 101 FTVVSDIFYKFSDVNDISK---QLELSGVVFTHEMVLKVLKNLESSP---DEARRFFNWV 154
F + D +K D+ + K +++ + F+ E+ +L N S +EARRF +
Sbjct: 277 FNTMLDSCFKAGDLERVDKIWLEMKRRNIEFS-EVTYNILINGFSKSGKMEEARRF-HGD 334
Query: 155 LEKESERLSSKTYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRNKMTEKFEKEGL 214
+++ ++ ++N ++ GL E WG+ D M G + N + G
Sbjct: 335 MQRSGFPVTPYSFNPLIEGYCKQGLFDEAWGVTDEMLNAGIYPTTSTYNIYIRALCEFGR 394
Query: 215 ESDLEKLKGIFATGSI--DNSIEKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKF 272
D +L A + N++ ++ K V + + DD++ + ++ N L+
Sbjct: 395 IDDARELLSSMAAPDVVSYNTLMHGYIKMRKFVEASLLFDDLKAGNINPSIVTYNTLIDG 454
Query: 273 VVDKLGDEPKKALIFFRWAEE--SGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSK 330
+ + E + R EE S + D +Y + + + ++ DEM K
Sbjct: 455 LCESGNLEGAQ-----RLKEEMTSQLIYPDVITYTTLLKGFVKNGNLSMATEIYDEMLRK 509
Query: 331 GYEME-METCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDM 389
G + + + +G + K A L+E M ++ + + + +R + K ++
Sbjct: 510 GIKPDGYAYTTRTVGELRLGDSEK-AFRLHE-EMVAEDHHAPDLTIYNVRIDGLCKVGNL 567
Query: 390 RLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKI 449
+ R G V +V++ + GR + M S +
Sbjct: 568 EKAIEFQRKIFRVGLVPDHVTYTTVIRGYLEKGRFKMARDLYDEMLSKRLSPSVITYFVL 627
Query: 450 AFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEG 509
+ AG+ ++A ++ M+ G +L+ G C AG++D+A KM E+EG
Sbjct: 628 IHGHAKAGRLEQAFQYSTEMKKRGVRPNVMTHNALLHGMCKAGNIDEAYRYLCKM-EEEG 686
Query: 510 TSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNL 560
S Y+ +L++ +C ++ + K + + +++P T+ L K+L
Sbjct: 687 ISPNKYSYTILISKHCDLDKWEEVVKLYKEML-DKEIEPDGYTHRALFKHL 736
Score = 41.2 bits (95), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 72/365 (19%), Positives = 134/365 (36%), Gaps = 13/365 (3%)
Query: 252 DDVERQLRDLNVTFSNDLVKFVVDKLGDEPK--KALIFFRWAEESGFVKHDESSYNAMAS 309
D + +++ N+ FS +++ K +A F + SGF S+N +
Sbjct: 294 DKIWLEMKRRNIEFSEVTYNILINGFSKSGKMEEARRFHGDMQRSGFPV-TPYSFNPLIE 352
Query: 310 VLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKP 369
++ D W V DEM + G T + E + +A +L +MA +
Sbjct: 353 GYCKQGLFDEAWGVTDEMLNAGIYPTTSTYNIYIRALCEFGRIDDARELLS-SMAAPDVV 411
Query: 370 SVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNK 429
S N T + I + K ++ L ++ N +++T N+++ L G + +
Sbjct: 412 SYN--TLMHGYIKMRKFVEASLLFDDLKAGNINPSIVT---YNTLIDGLCESGNLEGAQR 466
Query: 430 ILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHC 489
+ + M + + G A E D M G + + G
Sbjct: 467 LKEEMTSQLIYPDVITYTTLLKGFVKNGNLSMATEIYDEMLRKGIKPDGYAYTTRTVGEL 526
Query: 490 VAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPW 549
GD +KA ++MV ++ + ++ ++ C A +F R L P
Sbjct: 527 RLGDSEKAFRLHEEMVAEDHHAPDLTIYNVRIDGLCKVGNLEKAIEFQRKIFR-VGLVPD 585
Query: 550 HTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPFIKYV---SKSGTSDDAIAFLK 606
H TY +I+ L + FK A L M P V + + +K+G + A +
Sbjct: 586 HVTYTTVIRGYLEKGRFKMARDLYDEMLSKRLSPSVITYFVLIHGHAKAGRLEQAFQYST 645
Query: 607 GMTSK 611
M +
Sbjct: 646 EMKKR 650
>gi|242054609|ref|XP_002456450.1| hypothetical protein SORBIDRAFT_03g036550 [Sorghum bicolor]
gi|241928425|gb|EES01570.1| hypothetical protein SORBIDRAFT_03g036550 [Sorghum bicolor]
Length = 669
Score = 65.9 bits (159), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 81/381 (21%), Positives = 143/381 (37%), Gaps = 78/381 (20%)
Query: 303 SYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFA 362
+Y + + R ++ VLDEMR+KG + T ++ V +A +L
Sbjct: 180 TYTVLLEAMCRNSGFEQAMAVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDARELLNRL 239
Query: 363 MACKNKPSVNCCTFLLRKIVVSKQLD------------------------MRLFSK---- 394
+ +P T LL+ + SK+ D +R F +
Sbjct: 240 PSYGFQPDTVSYTTLLKGLCASKRWDDVEELFAEMMEKNCMPNEVTFDMLIRFFCRGGMV 299
Query: 395 -----VVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKI 449
V+ E+G + N V+ ++ GR+ + K+L M G + + +
Sbjct: 300 ERAIQVLEQMTEHGCATNTTLCNIVINSICKQGRVDDAFKLLNDMGSYGCNPDTISYTTV 359
Query: 450 AFRLSSAGKKDEANEFM-----------------------------------DHMEASGS 474
L A + D+A E + + M G
Sbjct: 360 LKGLCRAERWDDAKELLNEMVRNNCPPNEVTFNTFICILCQKGLIEQAIMLIEQMSEHGC 419
Query: 475 DVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDAC 534
VG + +L+ G CV G +D A + F+ M K T L+ C+ R A
Sbjct: 420 TVGVVTYNALVNGFCVQGHIDSALELFRSMPCKPNT----ITYTTLLTGLCNAERLDGAA 475
Query: 535 KFVHNCVREYDLKPWHTTYEELIKNLLVQRGF-KDALSLLCLMKDHGFPPFV---DPFIK 590
+ V +R D P T+ L+ + Q+GF ++A+ L+ M +HG P + + +
Sbjct: 476 ELVAEMLRG-DCPPNVVTFNVLV-SFFCQKGFLEEAIELVEQMMEHGCTPNLITYNTLLD 533
Query: 591 YVSKSGTSDDAIAFLKGMTSK 611
++K +S+DA+ L G+ SK
Sbjct: 534 GITKDCSSEDALELLHGLVSK 554
Score = 59.7 bits (143), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 46/199 (23%), Positives = 86/199 (43%), Gaps = 9/199 (4%)
Query: 447 SKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVE 506
+K+ L G+ +A + E SGS V + +L+ G+C G LD A ++++
Sbjct: 80 TKLIRNLCRRGRTSDAARVLRAAEGSGSPVDVFAYNTLVAGYCRYGHLDAA----RRLIG 135
Query: 507 KEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGF 566
+ Y L+ C + R DA + + +R +P TY L++ + GF
Sbjct: 136 SMPVAPDAYTYTPLIRVLCDRGRVADALSLLDDMLRR-GCQPNVVTYTVLLEAMCRNSGF 194
Query: 567 KDALSLLCLMKDHGFPPFV---DPFIKYVSKSGTSDDAIAFLKGMTSKRF-PSMSVVLCL 622
+ A+++L M+ G P + + I + + G DDA L + S F P L
Sbjct: 195 EQAMAVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDARELLNRLPSYGFQPDTVSYTTL 254
Query: 623 FAAFFQARRHSEAQDLLSK 641
++R + ++L ++
Sbjct: 255 LKGLCASKRWDDVEELFAE 273
Score = 46.2 bits (108), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 56/275 (20%), Positives = 105/275 (38%), Gaps = 54/275 (19%)
Query: 388 DMRLFSKVVRVFRENGNV-----LTDAML-----------NSVLKALISVGRMGECNKIL 431
D ++ ++RV + G V L D ML +L+A+ + +L
Sbjct: 142 DAYTYTPLIRVLCDRGRVADALSLLDDMLRRGCQPNVVTYTVLLEAMCRNSGFEQAMAVL 201
Query: 432 KAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVA 491
M G + + I + G+ D+A E ++ + + G + +L+KG C +
Sbjct: 202 DEMRAKGCTPNIVTYNVIINGMCREGRVDDARELLNRLPSYGFQPDTVSYTTLLKGLCAS 261
Query: 492 GDLDKAADCFQKMVEK-----------------------------EGTSHAGYAI----- 517
D + F +M+EK E + G A
Sbjct: 262 KRWDDVEELFAEMMEKNCMPNEVTFDMLIRFFCRGGMVERAIQVLEQMTEHGCATNTTLC 321
Query: 518 DLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMK 577
++++N+ C + R DA K +++ + Y P +Y ++K L + DA LL M
Sbjct: 322 NIVINSICKQGRVDDAFKLLND-MGSYGCNPDTISYTTVLKGLCRAERWDDAKELLNEMV 380
Query: 578 DHGFPP---FVDPFIKYVSKSGTSDDAIAFLKGMT 609
+ PP + FI + + G + AI ++ M+
Sbjct: 381 RNNCPPNEVTFNTFICILCQKGLIEQAIMLIEQMS 415
>gi|8778500|gb|AAF79508.1|AC002328_16 F20N2.6 [Arabidopsis thaliana]
Length = 554
Score = 65.9 bits (159), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 85/386 (22%), Positives = 150/386 (38%), Gaps = 16/386 (4%)
Query: 238 ASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVV---------DKLGDEPKKALIFF 288
ASR+ ++ D G + + L +LNV+ S LV+ V+ D K A FF
Sbjct: 157 ASRVLDTLQQDCPGFNTKSALDELNVSISGLLVREVLVGILRTLSFDNKTRCAKLAYKFF 216
Query: 289 RWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSE 348
W +H + Y+ + + +++DEM GY T ++ E
Sbjct: 217 VWCGGQENFRHTANCYHLLMKIFAECGEYKAMCRLIDEMIKDGYPTTACTFNLLICTCGE 276
Query: 349 RNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTD 408
+ ++ V+ + + +P + +L ++ KQ +L V E+G
Sbjct: 277 AGLARDVVEQFIKSKTFNYRPYKHSYNAILHSLLGVKQ--YKLIDWVYEQMLEDGFTPDV 334
Query: 409 AMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDH 468
N V+ A +G+ ++L M + GF + + L++ K A ++H
Sbjct: 335 LTYNIVMFANFRLGKTDRLYRLLDEMVKDGFSPDLYTYNILLHHLATGNKPLAALNLLNH 394
Query: 469 MEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKN 528
M G + G + +LI G AG L+ A F K G + +++ Y S
Sbjct: 395 MREVGVEPGVIHFTTLIDGLSRAGKLE-ACKYFMDETVKVGCTPDVVCYTVMITGYISGG 453
Query: 529 RAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGF-PPFV-- 585
A + + L P TY +I+ + FK+A +LL M+ G P FV
Sbjct: 454 ELEKAEEMFKEMTEKGQL-PNVFTYNSMIRGFCMAGKFKEACALLKEMESRGCNPNFVVY 512
Query: 586 DPFIKYVSKSGTSDDAIAFLKGMTSK 611
+ + +G +A +K M K
Sbjct: 513 STLVNNLKNAGKVLEAHEVVKDMVEK 538
>gi|413915825|gb|AFW21589.1| hypothetical protein ZEAMMB73_481763 [Zea mays]
gi|413923991|gb|AFW63923.1| hypothetical protein ZEAMMB73_685382 [Zea mays]
Length = 953
Score = 65.9 bits (159), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 70/318 (22%), Positives = 126/318 (39%), Gaps = 13/318 (4%)
Query: 300 DESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLY 359
D YN + + D W+V + M++ G E + T ++G + + ++EA LY
Sbjct: 223 DVVGYNTLVAGFFYSGDADAAWEVAERMKADGVEPSVVTHTTLIGEYCKMKRIEEAFTLY 282
Query: 360 EFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFREN---GNVLTDAMLNSVLK 416
E + P V + L+ + + FS+ +FRE G + +
Sbjct: 283 EGMVRSGVLPDVVTLSALVDGLCRDGR-----FSEAYALFREMDKIGVAPNHVTYCTFID 337
Query: 417 ALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDV 476
+L V R+ E +L M G M + + RL GK +EA + + H +
Sbjct: 338 SLAKVQRVNESLGLLGEMVSRGVAMDLVMYTTVMDRLGKEGKIEEAKDVLRHALSDNITP 397
Query: 477 GDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKF 536
+ L+ HC AG++D A +M EK + + ++N + A +
Sbjct: 398 NCVTYTVLVDAHCRAGNIDGAEQMLLQMEEKSVSPNV-VTFSSILNGLVKRGCIAKAAGY 456
Query: 537 VHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPP---FVDPFIKYVS 593
+ +++ + P TY LI +G + AL + M G VD + +
Sbjct: 457 MRK-MKDSGIAPNVVTYGTLIDGFFKCQGQEAALDVYRDMLHEGVEANNFIVDSLVNGLR 515
Query: 594 KSGTSDDAIAFLKGMTSK 611
K+G ++A A K M +
Sbjct: 516 KNGNIEEAEALFKDMGER 533
Score = 40.8 bits (94), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 65/318 (20%), Positives = 121/318 (38%), Gaps = 43/318 (13%)
Query: 287 FFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRF 346
F + +G + D+++YN M S RE + K+L+EM+ + + T ++
Sbjct: 596 FLKEMRNTGL-EPDQATYNTMISAQCREGNTSKALKLLNEMKWSSIKPNLITYTTLVVGL 654
Query: 347 SERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVL 406
E +V++A +LL ++ + F+ +R
Sbjct: 655 LEAGVVEKA-------------------KYLLNEMASAG------FTPTPLTYRR----- 684
Query: 407 TDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFM 466
VL+A ++ + M G A + + + L G +A +
Sbjct: 685 -------VLQACSGSRSPYVILEVHELMMGAGLHADITVYNTLVHVLCCHGMTRKATIVL 737
Query: 467 DHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCS 526
D M G + +LI GHC + LD A + +M+ +G S + L+ S
Sbjct: 738 DEMLGRGIAPDTITFNALILGHCKSSHLDNAFATYAQMLH-QGLSPNIATFNTLLGGLES 796
Query: 527 KNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVD 586
R +A + +++ L+P + TY+ L+ + +AL L C M GF P
Sbjct: 797 AGRIGEADTVICE-MKKMGLEPNNLTYDILVTGYAKKSNKVEALRLYCEMVSKGFIPKAS 855
Query: 587 PFIKYVS---KSGTSDDA 601
+ +S K+G + A
Sbjct: 856 TYNSLISDFAKAGMMNQA 873
Score = 40.0 bits (92), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 36/148 (24%), Positives = 65/148 (43%), Gaps = 2/148 (1%)
Query: 409 AMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDH 468
A N++L L S GR+GE + ++ M++ G ++ + + K EA
Sbjct: 785 ATFNTLLGGLESAGRIGEADTVICEMKKMGLEPNNLTYDILVTGYAKKSNKVEALRLYCE 844
Query: 469 MEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKN 528
M + G + SLI AG +++A + F +M ++ G H D+L+N + SK
Sbjct: 845 MVSKGFIPKASTYNSLISDFAKAGMMNQAKELFSEM-KRRGVLHTSSTYDILLNGW-SKL 902
Query: 529 RAIDACKFVHNCVREYDLKPWHTTYEEL 556
R + + ++E KP T +
Sbjct: 903 RNGTEVRILLKDMKELGFKPSKGTISSM 930
>gi|302799687|ref|XP_002981602.1| hypothetical protein SELMODRAFT_114819 [Selaginella moellendorffii]
gi|300150768|gb|EFJ17417.1| hypothetical protein SELMODRAFT_114819 [Selaginella moellendorffii]
Length = 628
Score = 65.9 bits (159), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 75/322 (23%), Positives = 135/322 (41%), Gaps = 11/322 (3%)
Query: 299 HDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDL 358
H E + N M L R +D K +EM S+ + E ++ + + + V L
Sbjct: 264 HAEEAQNQMIEHLCRSGMLDEACKTFEEMISRNHPPSAELFNTLIHAVCKSKRLPDGVLL 323
Query: 359 YEFAMACKN---KPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVL 415
++ + K P++ ++ + +KQLD ++V G ++++
Sbjct: 324 FQRMKSMKEFYCPPNLETYNIMVDNLCKAKQLDEA--QELVNEMANYGLSPDVVTYSALV 381
Query: 416 KALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSD 475
L +G++ +L+ M + G S + I LS AGK D A ++ M+A GS
Sbjct: 382 DGLCKLGKLDRACDLLEEMSKEGVFPDSFTDASILNALSKAGKVDYALSHLETMKARGST 441
Query: 476 VGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACK 535
+ +L+ G C AG +D+A KMV + T ++ +++ C +A A
Sbjct: 442 PDLVTYNTLLDGLCKAGRIDEAITFLAKMVAAKCTPDV-FSYTIIITALCRSGQAAGAHA 500
Query: 536 FVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFV--DPFIKYVS 593
V+ L P Y L+ L + G +D L+L L P FV + +
Sbjct: 501 IFQEMVKRGVL-PDTVLYHSLLDG-LARNGLED-LALELLKTSLCKPDFVMHKMVVDGLC 557
Query: 594 KSGTSDDAIAFLKGMTSKRFPS 615
K+G ++DA ++ M FP+
Sbjct: 558 KAGKAEDACEVVERMADAGFPA 579
Score = 44.7 bits (104), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 109/517 (21%), Positives = 186/517 (35%), Gaps = 85/517 (16%)
Query: 149 RFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRNKMTEK 208
R F+W+ ++ + S TYN L + Q + M+++GY + +
Sbjct: 23 RLFDWLGRQKGYQHSVFTYNCFLDALAKANAGQLAYEKFQQMQRRGYPPDDFTYSIVLRG 82
Query: 209 FEKEG-LESDLEKLKGIFATGSIDNSI--EKVASRICKVVRSDIWGDDVERQLRDLN--- 262
K G L+ E L + +G N I V CK R DD + ++
Sbjct: 83 LCKAGELDKAKELLGQLRESGVKLNVITYSVVIDGCCKASRV----DDALEIFKTMSAGG 138
Query: 263 ------VTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDC 316
VTF N L+K + G+ +A + F + ++G + + SY+ + L +
Sbjct: 139 GCVPDVVTF-NSLLKGLCS--GERMSEAFVLFEYMAKAG-CEPNVISYSTLLDGLCKAGR 194
Query: 317 IDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTF 376
+D ++ +EM K ++ + + N V EA D CC
Sbjct: 195 LDEACRLWEEMVEKSCVPDLVAYTSFVTGLCKANRVAEACD---------------CC-- 237
Query: 377 LLRKIVV-SKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAME 435
RK+V + D FS V+ + + G+ + N +++ L G + E K + M
Sbjct: 238 --RKMVTKGSKADAVAFSTVIGILCKKGH--AEEAQNQMIEHLCRSGMLDEACKTFEEMI 293
Query: 436 E------------------------GGFIASSNMKSKIAF--------------RLSSAG 457
G + MKS F L A
Sbjct: 294 SRNHPPSAELFNTLIHAVCKSKRLPDGVLLFQRMKSMKEFYCPPNLETYNIMVDNLCKAK 353
Query: 458 KKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAI 517
+ DEA E ++ M G + +L+ G C G LD+A D ++M KEG +
Sbjct: 354 QLDEAQELVNEMANYGLSPDVVTYSALVDGLCKLGKLDRACDLLEEM-SKEGVFPDSFTD 412
Query: 518 DLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMK 577
++N SK +D ++ P TY L+ L +A++ L M
Sbjct: 413 ASILNAL-SKAGKVDYALSHLETMKARGSTPDLVTYNTLLDGLCKAGRIDEAITFLAKMV 471
Query: 578 DHGFPPFVDPF---IKYVSKSGTSDDAIAFLKGMTSK 611
P V + I + +SG + A A + M +
Sbjct: 472 AAKCTPDVFSYTIIITALCRSGQAAGAHAIFQEMVKR 508
Score = 42.7 bits (99), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 45/193 (23%), Positives = 72/193 (37%), Gaps = 5/193 (2%)
Query: 453 LSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSH 512
L+ A A E M+ G D + +++G C AG+LDKA + ++ E G
Sbjct: 48 LAKANAGQLAYEKFQQMQRRGYPPDDFTYSIVLRGLCKAGELDKAKELLGQLRE-SGVKL 106
Query: 513 AGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSL 572
++++ C +R DA + P T+ L+K L +A L
Sbjct: 107 NVITYSVVIDGCCKASRVDDALEIFKTMSAGGGCVPDVVTFNSLLKGLCSGERMSEAFVL 166
Query: 573 LCLMKDHGFPPFV---DPFIKYVSKSGTSDDAIAFLKGMTSKR-FPSMSVVLCLFAAFFQ 628
M G P V + + K+G D+A + M K P + +
Sbjct: 167 FEYMAKAGCEPNVISYSTLLDGLCKAGRLDEACRLWEEMVEKSCVPDLVAYTSFVTGLCK 226
Query: 629 ARRHSEAQDLLSK 641
A R +EA D K
Sbjct: 227 ANRVAEACDCCRK 239
Score = 40.8 bits (94), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 52/224 (23%), Positives = 86/224 (38%), Gaps = 27/224 (12%)
Query: 414 VLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASG 473
VL+ L G + + ++L + E G + S + A + D+A E M A G
Sbjct: 79 VLRGLCKAGELDKAKELLGQLRESGVKLNVITYSVVIDGCCKASRVDDALEIFKTMSAGG 138
Query: 474 SDVGDKM-WVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAID 532
V D + + SL+KG C + +A F+ M K G + L++ C R +
Sbjct: 139 GCVPDVVTFNSLLKGLCSGERMSEAFVLFEYMA-KAGCEPNVISYSTLLDGLCKAGRLDE 197
Query: 533 ACKFVHNCVREYDLKPWHTTYEELIKNL---------------LVQRG-------FKDAL 570
AC+ V E P Y + L +V +G F +
Sbjct: 198 ACRLWEEMV-EKSCVPDLVAYTSFVTGLCKANRVAEACDCCRKMVTKGSKADAVAFSTVI 256
Query: 571 SLLCLMKDHGFPPFVDPFIKYVSKSGTSDDAIAFLKGMTSKRFP 614
+LC K H + I+++ +SG D+A + M S+ P
Sbjct: 257 GILC-KKGHA-EEAQNQMIEHLCRSGMLDEACKTFEEMISRNHP 298
>gi|449500717|ref|XP_004161177.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At1g02060, chloroplastic-like [Cucumis sativus]
Length = 720
Score = 65.9 bits (159), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 83/383 (21%), Positives = 158/383 (41%), Gaps = 59/383 (15%)
Query: 273 VVDKLG--DEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCID--RFWKVLDEMR 328
V+ LG + KAL FF WA+E G+ H E SY +M +LGR ++ R + E R
Sbjct: 82 VLQTLGFLRDTSKALQFFNWAQEMGYT-HTEQSYFSMLEILGRNRHLNTARNFLFSIEKR 140
Query: 329 SKGY-EMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQL 387
S+G ++E ++ F+ + +E++ ++ + PSV LL ++ +
Sbjct: 141 SRGIVKLEARFFNSLMRNFNRAGLFQESIKVFTIMKSHGVSPSVVTFNSLLTILLKRGRT 200
Query: 388 DM--RLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNM 445
+M +++ +++ + + T N +++ G + + +I + G
Sbjct: 201 NMAKKVYDEMLSTYGVTPDTFT---FNILIRGFCMNGMVDDGFRIFNDLSRFGCEPDVVT 257
Query: 446 KSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKM--WVSLIKGHCVAGDLDKAADCFQK 503
+ + L AGK A + M D+ + + +LI+G+C +++KA F++
Sbjct: 258 YNTLVDGLCRAGKVTVAYNVVKGMGKKSVDLNPNVVTYTTLIRGYCAKREIEKALAVFEE 317
Query: 504 MVEK-----------------------------EGTSHAGY------AIDLLVNTYCSKN 528
MV + EGT+ G + L++ +C
Sbjct: 318 MVNQGLKANNITYNTLIKGLCEARKFEKIKDILEGTAGDGTFSPDTCTFNTLMHCHCHAG 377
Query: 529 RAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLL-------CLMKDHGF 581
DA K V + E ++P TY L+++L ++ A LL L+ G
Sbjct: 378 NLDDALK-VFERMSELKIQPDSATYSALVRSLCQGGHYEKAEDLLDKLLERKILLSGDGC 436
Query: 582 PPFV---DPFIKYVSKSGTSDDA 601
P V +P KY+ ++G + A
Sbjct: 437 KPLVAAYNPIFKYLCETGKTKKA 459
Score = 44.7 bits (104), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 106/533 (19%), Positives = 203/533 (38%), Gaps = 73/533 (13%)
Query: 133 VLKVLKNLESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLVDVMKK 192
VL+ L L + +A +FFNW E + ++Y ML I+G + + + ++K
Sbjct: 82 VLQTLGFLRDT-SKALQFFNWAQEMGYTH-TEQSYFSMLEILGRNRHLNTARNFLFSIEK 139
Query: 193 KGYGVA---SHVRNKMTEKFEKEGLESDLEKLKGIFATGSIDNSI---EKVASRICKVVR 246
+ G+ + N + F + GL + K+ I + + S+ + + + K R
Sbjct: 140 RSRGIVKLEARFFNSLMRNFNRAGLFQESIKVFTIMKSHGVSPSVVTFNSLLTILLKRGR 199
Query: 247 SDIWGDDVERQLRDLNVT---FS-NDLVK-FVVDKLGDEPKKALIFFRWAEESGF-VKHD 300
+++ + L VT F+ N L++ F ++ + D+ F + + S F + D
Sbjct: 200 TNMAKKVYDEMLSTYGVTPDTFTFNILIRGFCMNGMVDDG-----FRIFNDLSRFGCEPD 254
Query: 301 ESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYE 360
+YN + L R + + V+ + M K++VDL
Sbjct: 255 VVTYNTLVDGLCRAGKVTVAYNVV------------------------KGMGKKSVDL-- 288
Query: 361 FAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRE---NGNVLTDAMLNSVLKA 417
P+V T L+R ++++ K + VF E G + N+++K
Sbjct: 289 -------NPNVVTYTTLIRGYCAKREIE-----KALAVFEEMVNQGLKANNITYNTLIKG 336
Query: 418 LISVGRMGECNKILKAME-EGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDV 476
L + + IL+ +G F + + + AG D+A + + M
Sbjct: 337 LCEARKFEKIKDILEGTAGDGTFSPDTCTFNTLMHCHCHAGNLDDALKVFERMSELKIQP 396
Query: 477 GDKMWVSLIKGHCVAGDLDKAADCFQKMVEK------EGTSHAGYAIDLLVNTYCSKNRA 530
+ +L++ C G +KA D K++E+ +G A + + C +
Sbjct: 397 DSATYSALVRSLCQGGHYEKAEDLLDKLLERKILLSGDGCKPLVAAYNPIFKYLCETGKT 456
Query: 531 IDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPFIK 590
A K +R P +Y+ LI + F+ LL LM F P + +
Sbjct: 457 KKAEKAFRQLMRRGTQDP--PSYKTLIMGHCKEGTFESGYELLVLMLRKDFXPDFETYES 514
Query: 591 YVSKSGTSDDAIAFL----KGMTSKRFPSMSVVLCLFAAFFQARRHSEAQDLL 639
++ D + L K + S P+ S + A + R SE+ L+
Sbjct: 515 LINGLLHMDKPLLALQSLEKMLRSSHRPNSSTFHSILAKLLEQGRASESASLI 567
>gi|297797449|ref|XP_002866609.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297312444|gb|EFH42868.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 724
Score = 65.9 bits (159), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 96/448 (21%), Positives = 185/448 (41%), Gaps = 40/448 (8%)
Query: 219 EKLKGIFATGSIDNSIEKVAS-RICKVVRSDIWGDDVERQLRDLNVTFSN-------DLV 270
EKL F S+ NS K+ ++CK++ + DV + + T S D+
Sbjct: 52 EKLLKPFDLDSLRNSFHKITPFQLCKLLELPL---DVSTSMELFSWTGSQKGYRHSFDVY 108
Query: 271 KFVVDKLGDEPKKALI--FFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMR 328
+ ++ KLG + I ++ G V ES + ++ + + +++ EMR
Sbjct: 109 QVLIGKLGSNGEFKTIDRLLMQMKDEGIV-FKESLFISIMRDYDKAGFPGQTTRLMLEMR 167
Query: 329 S--------KGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRK 380
+ K Y + +E V N K A +++ ++ K P++ +++
Sbjct: 168 NVYSCEPTFKSYNVVLEILV-------SGNCHKVAANVFYDMLSRKIPPTLFTFGVVMKA 220
Query: 381 IVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFI 440
+ ++D L V+R ++G V + +++ +L R+ E ++L+ M G +
Sbjct: 221 LCAVNEVDSAL--SVLRDMTKHGCVPNSVIYQTLIHSLSKCNRVNEALQLLEEMFLMGCV 278
Query: 441 ASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADC 500
+ + + L + +EA + ++ M G D + L+ G C G +D A D
Sbjct: 279 PDAETFNDVILGLCKFDRINEAAKMVNRMLIRGFTPDDITYGYLMNGLCKIGRVDAAKDL 338
Query: 501 FQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNL 560
F ++ + + L++ + + R DA + + V Y + P TY LI
Sbjct: 339 FYRIPKPTSV-----IFNTLIHGFVTHGRLDDAKAVLSDMVTSYGIVPDVCTYNSLIYGY 393
Query: 561 LVQRGFKDALSLLCLMKDHGFPPFVDPFIKYVS---KSGTSDDAIAFLKGMTSKRF-PSM 616
+ AL +L M++ G P V + V K G D+A L M++ P+
Sbjct: 394 WKKGLVGLALEVLRDMRNKGCKPNVYSYTILVDGFCKLGKIDEAYNLLNEMSADGLKPNT 453
Query: 617 SVVLCLFAAFFQARRHSEAQDLLSKCPR 644
CL +AF + R EA ++ + PR
Sbjct: 454 VGFNCLISAFCKEHRIPEAVEIFREMPR 481
Score = 63.9 bits (154), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 67/311 (21%), Positives = 126/311 (40%), Gaps = 42/311 (13%)
Query: 298 KHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVD 357
K + SY + + ID + +L+EM + G + ++ F + + + EAV+
Sbjct: 415 KPNVYSYTILVDGFCKLGKIDEAYNLLNEMSADGLKPNTVGFNCLISAFCKEHRIPEAVE 474
Query: 358 LYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKA 417
++ + P C + D+ F NS++
Sbjct: 475 IF------REMPRKGC------------KPDVYTF-------------------NSLISG 497
Query: 418 LISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVG 477
L V + +L+ M G +A++ + + G+ EA + ++ M GS +
Sbjct: 498 LCEVDEIKHALWLLRDMISEGVVANTVTYNTLINAFLRRGEIKEARKLVNEMVFQGSLLD 557
Query: 478 DKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFV 537
+ + SLIKG C AG++DKA F+KM+ ++G + + ++L+N C +A +F
Sbjct: 558 EITYNSLIKGLCRAGEVDKARSLFEKML-RDGLVPSSISCNILINGLCRSGMVEEAVEFQ 616
Query: 538 HNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPP---FVDPFIKYVSK 594
V P T+ LI L +D L++ ++ G PP + + ++ K
Sbjct: 617 KEMVLRGS-TPDIVTFNSLINGLCRAGRIEDGLTMFRKLQAEGIPPDTVTYNTLMSWLCK 675
Query: 595 SGTSDDAIAFL 605
G DA L
Sbjct: 676 GGFVYDACLLL 686
Score = 58.9 bits (141), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 60/267 (22%), Positives = 114/267 (42%), Gaps = 4/267 (1%)
Query: 297 VKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAV 356
+K + +N + S +E I ++ EM KG + ++ T ++ E + +K A+
Sbjct: 449 LKPNTVGFNCLISAFCKEHRIPEAVEIFREMPRKGCKPDVYTFNSLISGLCEVDEIKHAL 508
Query: 357 DLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLK 416
L ++ N T+ ++ +++ K+V G++L + NS++K
Sbjct: 509 WLLRDMIS--EGVVANTVTYNTLINAFLRRGEIKEARKLVNEMVFQGSLLDEITYNSLIK 566
Query: 417 ALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDV 476
L G + + + + M G + SS + + L +G +EA EF M GS
Sbjct: 567 GLCRAGEVDKARSLFEKMLRDGLVPSSISCNILINGLCRSGMVEEAVEFQKEMVLRGSTP 626
Query: 477 GDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKF 536
+ SLI G C AG ++ F+K+ + EG + L++ C DAC
Sbjct: 627 DIVTFNSLINGLCRAGRIEDGLTMFRKL-QAEGIPPDTVTYNTLMSWLCKGGFVYDACLL 685
Query: 537 VHNCVREYDLKPWHTTYEELIKNLLVQ 563
+ + E P T+ L+++L+ Q
Sbjct: 686 LDEGI-EDGFVPNDRTWSILLQSLVPQ 711
>gi|15229026|ref|NP_190450.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75183419|sp|Q9M302.1|PP270_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g48810
gi|7576219|emb|CAB87909.1| putative protein [Arabidopsis thaliana]
gi|332644937|gb|AEE78458.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 659
Score = 65.9 bits (159), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 82/398 (20%), Positives = 151/398 (37%), Gaps = 53/398 (13%)
Query: 284 ALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVL 343
AL FF+ S KH ++ M L + +D +L +M+ +G+ + + V+
Sbjct: 59 ALHFFKSIANSNLFKHTPLTFEVMIRKLAMDGQVDSVQYLLQQMKLQGFHCSEDLFISVI 118
Query: 344 GRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENG 403
+ + + + AV+++ PSV +L ++ ++ M V R + +G
Sbjct: 119 SVYRQVGLAERAVEMFYRIKEFGCDPSVKIYNHVLDTLLGENRIQM--IYMVYRDMKRDG 176
Query: 404 ---NVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKD 460
NV T N +LKAL ++ K+L M G + + + + G
Sbjct: 177 FEPNVFT---YNVLLKALCKNNKVDGAKKLLVEMSNKGCCPDAVSYTTVISSMCEVGLVK 233
Query: 461 EANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLL 520
E E + E S ++ +LI G C D A + ++MVEK G S + L
Sbjct: 234 EGRELAERFEPVVS-----VYNALINGLCKEHDYKGAFELMREMVEK-GISPNVISYSTL 287
Query: 521 VNTYCS-----------------------------------KNRAIDACKFVHNCVREYD 545
+N C+ + DA + +R +
Sbjct: 288 INVLCNSGQIELAFSFLTQMLKRGCHPNIYTLSSLVKGCFLRGTTFDALDLWNQMIRGFG 347
Query: 546 LKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPF---IKYVSKSGTSDDAI 602
L+P Y L++ A+S+ M++ G P + + I +K G+ D A+
Sbjct: 348 LQPNVVAYNTLVQGFCSHGNIVKAVSVFSHMEEIGCSPNIRTYGSLINGFAKRGSLDGAV 407
Query: 603 AFL-KGMTSKRFPSMSVVLCLFAAFFQARRHSEAQDLL 639
K +TS P++ V + A + + EA+ L+
Sbjct: 408 YIWNKMLTSGCCPNVVVYTNMVEALCRHSKFKEAESLI 445
Score = 39.7 bits (91), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 109/543 (20%), Positives = 195/543 (35%), Gaps = 109/543 (20%)
Query: 134 LKVLKNL--ESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLVDVMK 191
L V+K L ES A FF + + + T+ +M+R + + G V L+ MK
Sbjct: 44 LDVVKRLRQESCVPLALHFFKSIANSNLFKHTPLTFEVMIRKLAMDGQVDSVQYLLQQMK 103
Query: 192 KKGYGVASHVRNKMTEKFEKEGLESDLEKLKGIFATGSIDNSIEKVASRICKVVRSDIWG 251
+G+ + + + + + GL E+ +F
Sbjct: 104 LQGFHCSEDLFISVISVYRQVGLA---ERAVEMF-------------------------- 134
Query: 252 DDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIF--FRWAEESGFVKHDESSYNAMAS 309
++++ S + V+D L E + +I+ +R + GF + + +YN +
Sbjct: 135 ----YRIKEFGCDPSVKIYNHVLDTLLGENRIQMIYMVYRDMKRDGF-EPNVFTYNVLLK 189
Query: 310 VLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDL---YEFAMACK 366
L + + +D K+L EM +KG + + V+ E +VKE +L +E ++
Sbjct: 190 ALCKNNKVDGAKKLLVEMSNKGCCPDAVSYTTVISSMCEVGLVKEGRELAERFEPVVSVY 249
Query: 367 NKPSVNCC-------TFLLRKIVVSKQLDMRL--FSKVVRVFRENGNV------LTDAM- 410
N C F L + +V K + + +S ++ V +G + LT +
Sbjct: 250 NALINGLCKEHDYKGAFELMREMVEKGISPNVISYSTLINVLCNSGQIELAFSFLTQMLK 309
Query: 411 ---------LNSVLKALISVGRMGECNKILKAMEEG-GFIASSNMKSKIAFRLSSAGKKD 460
L+S++K G + + M G G + + + S G
Sbjct: 310 RGCHPNIYTLSSLVKGCFLRGTTFDALDLWNQMIRGFGLQPNVVAYNTLVQGFCSHGNIV 369
Query: 461 EANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLL 520
+A HME G + + SLI G G LD A + KM
Sbjct: 370 KAVSVFSHMEEIGCSPNIRTYGSLINGFAKRGSLDGAVYIWNKM---------------- 413
Query: 521 VNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHG 580
+ + C N + Y +++ L FK+A SL+ +M
Sbjct: 414 LTSGCCPNVVV---------------------YTNMVEALCRHSKFKEAESLIEIMSKEN 452
Query: 581 FPPFV---DPFIKYVSKSGTSDDAIAFLKGMTSKRF--PSMSVVLCLFAAFFQARRHSEA 635
P V + FIK + +G D A + M + P++ L +A R EA
Sbjct: 453 CAPSVPTFNAFIKGLCDAGRLDWAEKVFRQMEQQHRCPPNIVTYNELLDGLAKANRIEEA 512
Query: 636 QDL 638
L
Sbjct: 513 YGL 515
Score = 39.7 bits (91), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 53/286 (18%), Positives = 113/286 (39%), Gaps = 7/286 (2%)
Query: 303 SYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFA 362
+YN + I + V M G + T ++ F++R + AV ++
Sbjct: 354 AYNTLVQGFCSHGNIVKAVSVFSHMEEIGCSPNIRTYGSLINGFAKRGSLDGAVYIWNKM 413
Query: 363 MACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVG 422
+ P+V T ++ + + + ++ + + + N+ +K L G
Sbjct: 414 LTSGCCPNVVVYTNMVEAL--CRHSKFKEAESLIEIMSKENCAPSVPTFNAFIKGLCDAG 471
Query: 423 RMGECNKILKAMEEGGFIASSNMK-SKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMW 481
R+ K+ + ME+ + + +++ L+ A + +EA + G + +
Sbjct: 472 RLDWAEKVFRQMEQQHRCPPNIVTYNELLDGLAKANRIEEAYGLTREIFMRGVEWSSSTY 531
Query: 482 VSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVH--N 539
+L+ G C AG A KM+ +G S +++++ YC + +A A + + +
Sbjct: 532 NTLLHGSCNAGLPGIALQLVGKMM-VDGKSPDEITMNMIILAYCKQGKAERAAQMLDLVS 590
Query: 540 CVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFV 585
C R +P +Y +I L +D + LL M G P +
Sbjct: 591 CGRR-KWRPDVISYTNVIWGLCRSNCREDGVILLERMISAGIVPSI 635
>gi|356495305|ref|XP_003516519.1| PREDICTED: pentatricopeptide repeat-containing protein At2g17525,
mitochondrial-like [Glycine max]
Length = 618
Score = 65.9 bits (159), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 79/338 (23%), Positives = 136/338 (40%), Gaps = 24/338 (7%)
Query: 283 KALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEM-RSKGYEMEMETCVK 341
+AL +FRWA H +S+Y A+ L D ++LDEM S G + +
Sbjct: 51 EALEYFRWASTVPNFVHSQSTYRALIHKLCTFRRFDTVKQLLDEMPHSLGAPPGDDIFIT 110
Query: 342 VLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDM-RLFSKVVRVFR 400
++ M + + + + PS+ +L ++V + +DM R F + +
Sbjct: 111 IIRGLGRARMTRTVIKVLDLVYKFHGSPSLKIFNSIL-DVLVKEDIDMAREFYR--KSMM 167
Query: 401 ENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKD 460
+G D ++K L R+GE K+L+ ++ G ++ + + + L GK
Sbjct: 168 ASGVEGDDYTFGILMKGLCLTNRIGEGFKLLQLIKSRGVAPNTVVYNTLLHALCRNGKVG 227
Query: 461 EANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDL- 519
A M+ ME D D + LI G+C K + Q +V E + G+ D+
Sbjct: 228 RARNLMNEME----DPNDVTFNILISGYC------KEGNSVQALVLLEKSFSMGFVPDVV 277
Query: 520 ----LVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCL 575
++ C+ R ++A + + L Y LIK K L L
Sbjct: 278 SVTKVLEILCNAGRTMEAAEVLERVESMGGLLDV-VAYNTLIKGFCGAGKVKVGLHFLKQ 336
Query: 576 MKDHGFPPFVDPF---IKYVSKSGTSDDAIAFLKGMTS 610
M++ G P VD + I S+SG D A+ M +
Sbjct: 337 MENKGCLPNVDTYNVLISGFSESGMLDLALDLFNDMKT 374
>gi|297828900|ref|XP_002882332.1| hypothetical protein ARALYDRAFT_896436 [Arabidopsis lyrata subsp.
lyrata]
gi|297328172|gb|EFH58591.1| hypothetical protein ARALYDRAFT_896436 [Arabidopsis lyrata subsp.
lyrata]
Length = 790
Score = 65.9 bits (159), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 110/493 (22%), Positives = 199/493 (40%), Gaps = 47/493 (9%)
Query: 137 LKNLESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLVDVMKKKGYG 196
L +L P A +F W+ + + + + +Y +L ++ H +V + ++ M K Y
Sbjct: 74 LFSLNLDPHTALQFSYWISQTPNFKHNVDSYASLLTLIDHHKIVSDVPKIIVSMIKCCYS 133
Query: 197 V-----ASHVRNKMT-EKFEKEGLESDLEKLKGIFATGSIDNSIEKVASRICKVVRSDIW 250
S + KM+ + K L+ E L + G +D + + + V DI+
Sbjct: 134 APDALFVSDICRKMSKDDITKLSLKCYNELLTLLARFGLVDEMNQLYTEMLEEFVSMDIY 193
Query: 251 GDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASV 310
TF +L+ V K+G K+A F ++G + + + +
Sbjct: 194 -------------TF--NLMINVYCKMG-FVKEAKQFMCKMIQAGL---SPDYFTSTSFI 234
Query: 311 LG--REDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNK 368
LG R +D ++V +EM ++ E+ +++ E + EAV L+
Sbjct: 235 LGYCRSKDVDSAFRVFEEMPNRN-EVSYN---QLIHGLCEAGRIDEAVSLFVRMKDDCCY 290
Query: 369 PSVNCCTFLLRKIV---VSKQLDMRLFSKVVRVFRENGNVLTDAM-LNSVLKALISVGRM 424
P+V T L++ + V K M L +++ N++ D + NS++ G +
Sbjct: 291 PNVYTYTALIKGLCRKNVHKA--MGLLDEMLE-----RNLVPDLITYNSLIAGQCRAGHL 343
Query: 425 GECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSL 484
++L M+E G + L + + +EA D + G M+ L
Sbjct: 344 DSAYRLLSLMKERGLVPDQRTYGCFIDFLCKSNRVEEARRLFDSLTEEGVSANVIMYSVL 403
Query: 485 IKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREY 544
I G+C G +D+A F+KM+ K + +A Y + L++ CS +A V+
Sbjct: 404 IDGYCKVGKVDEAGCLFEKMLSKNCSPNA-YTFNALIHGLCSAGNLKEALSLFDQMVK-M 461
Query: 545 DLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFV---DPFIKYVSKSGTSDDA 601
LKP T+ LI +L Q F DA L M G P + FI+ +G +A
Sbjct: 462 GLKPTVYTFNILIGRMLKQGDFDDAHKCLQKMMSSGEKPVARTYNAFIEVYCSAGKVQEA 521
Query: 602 IAFLKGMTSKRFP 614
+ M + P
Sbjct: 522 EDMMVQMKEEGVP 534
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 115/513 (22%), Positives = 192/513 (37%), Gaps = 61/513 (11%)
Query: 131 EMVLKVLKNLESSPDEARRFFNWVLEKESE----RLSSKTYNLMLRIVGVHGLVQEFWGL 186
++++ ++K S+PD F + + K S+ +LS K YN +L ++ GLV E L
Sbjct: 122 KIIVSMIKCCYSAPDAL--FVSDICRKMSKDDITKLSLKCYNELLTLLARFGLVDEMNQL 179
Query: 187 VDVMKKKGYGVASHVRNKMTEKFEKEGLESDLEKLKGIFATGSIDNSIEKVASRICKVVR 246
M ++ + + N M + K G +++ +CK+++
Sbjct: 180 YTEMLEEFVSMDIYTFNLMINVYCKMGF-------------------VKEAKQFMCKMIQ 220
Query: 247 SDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNA 306
+ + D L S D VD FR EE +E SYN
Sbjct: 221 AGLSPDYFTSTSFILGYCRSKD-----VDSA----------FRVFEE--MPNRNEVSYNQ 263
Query: 307 MASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACK 366
+ L ID + M+ + T ++ +N V +A+ L + +
Sbjct: 264 LIHGLCEAGRIDEAVSLFVRMKDDCCYPNVYTYTALIKGLCRKN-VHKAMGLLDEMLERN 322
Query: 367 NKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGE 426
P + L+ + LD +++ + +E G V + L R+ E
Sbjct: 323 LVPDLITYNSLIAGQCRAGHLDSAY--RLLSLMKERGLVPDQRTYGCFIDFLCKSNRVEE 380
Query: 427 CNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIK 486
++ ++ E G A+ M S + GK DEA + M + + +LI
Sbjct: 381 ARRLFDSLTEEGVSANVIMYSVLIDGYCKVGKVDEAGCLFEKMLSKNCSPNAYTFNALIH 440
Query: 487 GHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREY-- 544
G C AG+L +A F +MV K G Y ++L+ + DA H C+++
Sbjct: 441 GLCSAGNLKEALSLFDQMV-KMGLKPTVYTFNILIGRMLKQGDFDDA----HKCLQKMMS 495
Query: 545 -DLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPF-----IKYVSKSGTS 598
KP TY I+ ++A ++ MK+ G PP D F IK K G +
Sbjct: 496 SGEKPVARTYNAFIEVYCSAGKVQEAEDMMVQMKEEGVPP--DDFTYTSLIKAYGKLGLT 553
Query: 599 DDAIAFLKGMTSKRF-PSMSVVLCLFAAFFQAR 630
A LK M PS L L F R
Sbjct: 554 YSAFDVLKSMFDADCEPSHHTFLSLIKQLFDKR 586
>gi|357128238|ref|XP_003565781.1| PREDICTED: pentatricopeptide repeat-containing protein At1g71060,
mitochondrial-like [Brachypodium distachyon]
Length = 547
Score = 65.9 bits (159), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 91/410 (22%), Positives = 165/410 (40%), Gaps = 37/410 (9%)
Query: 117 ISKQLELSGVVFTHEMVLKVLKNLESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVGV 176
I+ L+ GV + E+V +VL+NL ++ A FF W ++ R ++++++ ++ +G
Sbjct: 114 IASALDALGVNMSPELVAEVLRNLSNAGILALAFFRWAERQQGFRYTAESFHNLIEALGK 173
Query: 177 HGLVQEFWGLVDVMKKKG-------------YGVASHVRNKMTEKFEKE---GLESDLEK 220
+ W LV+ M+ +G Y A V+ + E FEK GL++DL
Sbjct: 174 IKQFRLVWSLVEAMRCRGLLSKDTFRLIVRRYARARKVKEAV-ETFEKMSSFGLKADL-- 230
Query: 221 LKGIFATGSIDNSIEKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDE 280
S N + V S+ +V ++ +++R N F DL + V G
Sbjct: 231 --------SDYNWLIDVLSKSKQVKKAHAIFKEMKR-----NGRFVPDLKTYTVLMEGWG 277
Query: 281 PKKALIFFRWAEESGF---VKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEME 337
+K L+ + + +K D +Y + S + D KV EM + G
Sbjct: 278 HEKDLLMLKSVYQEMLDAGIKPDVVAYGTLISSFCKSGKCDEAIKVFREMEANGCMPSPH 337
Query: 338 TCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVR 397
++ + EA+ +E + A V C ++ S + K+V
Sbjct: 338 VYCMLINGLGSEERLDEALKYFELSKASGFPMEVPTCNAVVGAYCRSSKFQHAF--KMVD 395
Query: 398 VFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAG 457
R+ G + +L+ LI ++ E + + M G N + + S
Sbjct: 396 EMRKTGIGPNARTYDIILQYLIKSQKIEEAYNVFQRMGMEGCEPQLNTYTMMVGMFCSNE 455
Query: 458 KKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEK 507
+ D A + M+ G M+ SLI G C L++A FQ+M++K
Sbjct: 456 RVDMALKVWKQMKEKGVLPCMHMFSSLINGLCFENRLEEACVYFQEMLDK 505
>gi|356577033|ref|XP_003556634.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g39710-like [Glycine max]
Length = 757
Score = 65.5 bits (158), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 87/356 (24%), Positives = 139/356 (39%), Gaps = 51/356 (14%)
Query: 268 DLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEM 327
DLV + +LG PK AL A GF SYNA+ L R
Sbjct: 136 DLVVKSLSRLGFVPK-ALTLLHLANRHGFAP-TVLSYNAVLDALLR-------------- 179
Query: 328 RSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQL 387
RS + + +V R+MV+ V P+V ++R +V L
Sbjct: 180 RSSSNHRDYDDAERVF-----RDMVRNGVS-----------PNVYTYNVIIRGVVSQGDL 223
Query: 388 DMRLFSKVVRVFRENG---NVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSN 444
+ L +R + G NV+T N+++ A ++ E +L+AM GG A+
Sbjct: 224 EKGL--GFMRKMEKEGISPNVVT---YNTLIDASCKKKKVKEAMALLRAMAVGGVAANLI 278
Query: 445 MKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKM 504
+ + L G+ E E ++ M G + + +L+ G C G+L + +M
Sbjct: 279 SYNSVINGLCGKGRMSEVGELVEEMRGKGLVPDEVTYNTLVNGFCKEGNLHQGLVLLSEM 338
Query: 505 VEKEGTSHAGYAIDLLVNTYCSK---NRAIDACKFVHNCVREYDLKPWHTTYEELIKNLL 561
V K G S L+N C +RA++ + + +R L+P TY LI
Sbjct: 339 VGK-GLSPNVVTYTTLINCMCKAGNLSRAVE----IFDQMRVRGLRPNERTYTTLIDGFC 393
Query: 562 VQRGFKDALSLLCLMKDHGFPPFVDPFIKYVSKS---GTSDDAIAFLKGMTSKRFP 614
+ +A +L M GF P V + V G +A+ L+GM + P
Sbjct: 394 QKGLMNEAYKVLSEMIVSGFSPSVVTYNALVHGYCFLGRVQEAVGILRGMVERGLP 449
Score = 53.5 bits (127), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 77/325 (23%), Positives = 127/325 (39%), Gaps = 13/325 (4%)
Query: 262 NVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFW 321
NV N L+ K + K+A+ R A G V + SYN++ + L + +
Sbjct: 241 NVVTYNTLIDASCKK--KKVKEAMALLR-AMAVGGVAANLISYNSVINGLCGKGRMSEVG 297
Query: 322 KVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKI 381
++++EMR KG + T ++ F + + + + L + P+V T L+ +
Sbjct: 298 ELVEEMRGKGLVPDEVTYNTLVNGFCKEGNLHQGLVLLSEMVGKGLSPNVVTYTTLINCM 357
Query: 382 VVSKQLD--MRLFSKV-VRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGG 438
+ L + +F ++ VR R N T +++ G M E K+L M G
Sbjct: 358 CKAGNLSRAVEIFDQMRVRGLRPNERTYT-----TLIDGFCQKGLMNEAYKVLSEMIVSG 412
Query: 439 FIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAA 498
F S + + G+ EA + M G + ++I G C +L KA
Sbjct: 413 FSPSVVTYNALVHGYCFLGRVQEAVGILRGMVERGLPPDVVSYSTVIAGFCRERELGKAF 472
Query: 499 DCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIK 558
++MVEK G L+ C + + ++A +R L P TY LI
Sbjct: 473 QMKEEMVEK-GVLPDTVTYSSLIQGLCLQQKLVEAFDLFREMMRR-GLPPDEVTYTSLIN 530
Query: 559 NLLVQRGFKDALSLLCLMKDHGFPP 583
V AL L M GF P
Sbjct: 531 AYCVDGELSKALRLHDEMVQRGFLP 555
Score = 52.4 bits (124), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 90/442 (20%), Positives = 176/442 (39%), Gaps = 16/442 (3%)
Query: 127 VFTHEMVLKVLKNLESSP----DEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQE 182
V ++ VL L SS D+A R F ++ + + TYN+++R V G +++
Sbjct: 167 VLSYNAVLDALLRRSSSNHRDYDDAERVFRDMV-RNGVSPNVYTYNVIIRGVVSQGDLEK 225
Query: 183 FWGLVDVMKKKGYGVASHVRNKMTE-KFEKEGLESDLEKLKGIFATGSIDN--SIEKVAS 239
G + M+K+G N + + +K+ ++ + L+ + G N S V +
Sbjct: 226 GLGFMRKMEKEGISPNVVTYNTLIDASCKKKKVKEAMALLRAMAVGGVAANLISYNSVIN 285
Query: 240 RICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPK--KALIFFRWAEESGFV 297
+C R G+ VE ++R + +V+ E + L+ G +
Sbjct: 286 GLCGKGRMSEVGELVE-EMRGKGLVPDEVTYNTLVNGFCKEGNLHQGLVLLSEMVGKG-L 343
Query: 298 KHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVD 357
+ +Y + + + + + R ++ D+MR +G T ++ F ++ ++ EA
Sbjct: 344 SPNVVTYTTLINCMCKAGNLSRAVEIFDQMRVRGLRPNERTYTTLIDGFCQKGLMNEAYK 403
Query: 358 LYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKA 417
+ + PSV L+ ++ + ++R E G ++V+
Sbjct: 404 VLSEMIVSGFSPSVVTYNALVHGYCFLGRVQEAV--GILRGMVERGLPPDVVSYSTVIAG 461
Query: 418 LISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVG 477
+G+ ++ + M E G + + S + L K EA + M G
Sbjct: 462 FCRERELGKAFQMKEEMVEKGVLPDTVTYSSLIQGLCLQQKLVEAFDLFREMMRRGLPPD 521
Query: 478 DKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFV 537
+ + SLI +CV G+L KA +MV++ G +L+N K R A + +
Sbjct: 522 EVTYTSLINAYCVDGELSKALRLHDEMVQR-GFLPDNVTYSVLINGLNKKARTKVAKRLL 580
Query: 538 HNCVREYDLKPWHTTYEELIKN 559
E + P TY LI+N
Sbjct: 581 LKLFYEESV-PDDVTYNTLIEN 601
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 74/341 (21%), Positives = 129/341 (37%), Gaps = 18/341 (5%)
Query: 252 DDVERQLRDL-------NVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSY 304
DD ER RD+ NV N +++ VV + GD +K L F R E+ G + + +Y
Sbjct: 189 DDAERVFRDMVRNGVSPNVYTYNVIIRGVVSQ-GDL-EKGLGFMRKMEKEG-ISPNVVTY 245
Query: 305 NAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMA 364
N + ++ + +L M G + + V+ + + E +L E
Sbjct: 246 NTLIDASCKKKKVKEAMALLRAMAVGGVAANLISYNSVINGLCGKGRMSEVGELVEEMRG 305
Query: 365 CKNKPSVNCCTFLLRKIVVSKQL--DMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVG 422
P L+ L + L S++V V ++N + KA G
Sbjct: 306 KGLVPDEVTYNTLVNGFCKEGNLHQGLVLLSEMVGKGLSPNVVTYTTLINCMCKA----G 361
Query: 423 RMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWV 482
+ +I M G + + + G +EA + + M SG +
Sbjct: 362 NLSRAVEIFDQMRVRGLRPNERTYTTLIDGFCQKGLMNEAYKVLSEMIVSGFSPSVVTYN 421
Query: 483 SLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVR 542
+L+ G+C G + +A + MVE+ G + ++ +C + A + V
Sbjct: 422 ALVHGYCFLGRVQEAVGILRGMVER-GLPPDVVSYSTVIAGFCRERELGKAFQMKEEMV- 479
Query: 543 EYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPP 583
E + P TY LI+ L +Q+ +A L M G PP
Sbjct: 480 EKGVLPDTVTYSSLIQGLCLQQKLVEAFDLFREMMRRGLPP 520
>gi|15238925|ref|NP_199046.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75154282|sp|Q8L844.1|PP413_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At5g42310, mitochondrial; Flags: Precursor
gi|21539517|gb|AAM53311.1| maize crp1 protein-like [Arabidopsis thaliana]
gi|332007411|gb|AED94794.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 709
Score = 65.5 bits (158), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 107/523 (20%), Positives = 209/523 (39%), Gaps = 49/523 (9%)
Query: 121 LELSGVVFTHEMVLKVLKNLESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLV 180
L+ + F++E++ +L + + + + + L + + L+ TYN ++ + +
Sbjct: 157 LQKHNLCFSYELLYSILIH---ALGRSEKLYEAFLLSQKQTLTPLTYNALIGACARNNDI 213
Query: 181 QEFWGLVDVMKKKGYGVASHVRNKMTEKFEKEGLESDLEKLKGIFATGSIDNSIEKVAS- 239
++ L+ M++ GY +SD + + + N I+ V
Sbjct: 214 EKALNLIAKMRQDGY-------------------QSDFVNYSLVIQSLTRSNKIDSVMLL 254
Query: 240 RICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKH 299
R+ K ++ER +L+V ND++ K GD P KAL A+ +G +
Sbjct: 255 RLYK---------EIERDKLELDVQLVNDIIMGFA-KSGD-PSKALQLLGMAQATG-LSA 302
Query: 300 DESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLY 359
++ ++ S L + +E+R G + +L + + +K+A +
Sbjct: 303 KTATLVSIISALADSGRTLEAEALFEELRQSGIKPRTRAYNALLKGYVKTGPLKDAESMV 362
Query: 360 EFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALI 419
P + + L+ V + + + +++V E G+V ++ + S L L
Sbjct: 363 SEMEKRGVSPDEHTYSLLIDAYVNAGRWES---ARIVLKEMEAGDVQPNSFVFSRL--LA 417
Query: 420 SVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGK---KDEANEFMDHMEASGSDV 476
GE K + ++E I + + + GK D A D M + G +
Sbjct: 418 GFRDRGEWQKTFQVLKEMKSIGVKPDRQFYNVVIDTFGKFNCLDHAMTTFDRMLSEGIEP 477
Query: 477 GDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKF 536
W +LI HC G A + F+ M E+ G ++++N+Y + R D +
Sbjct: 478 DRVTWNTLIDCHCKHGRHIVAEEMFEAM-ERRGCLPCATTYNIMINSYGDQERWDDMKRL 536
Query: 537 VHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPP---FVDPFIKYVS 593
+ ++ + P T+ L+ F DA+ L MK G P + I +
Sbjct: 537 LGK-MKSQGILPNVVTHTTLVDVYGKSGRFNDAIECLEEMKSVGLKPSSTMYNALINAYA 595
Query: 594 KSGTSDDAIAFLKGMTSKRF-PSMSVVLCLFAAFFQARRHSEA 635
+ G S+ A+ + MTS PS+ + L AF + RR +EA
Sbjct: 596 QRGLSEQAVNAFRVMTSDGLKPSLLALNSLINAFGEDRRDAEA 638
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 95/487 (19%), Positives = 184/487 (37%), Gaps = 82/487 (16%)
Query: 84 MICSYSSEPAMEQKESDFTVVSDIFYKFSDVNDISKQLEL------SGVVFTHEMVLKVL 137
M+ E ++ E D +V+DI F+ D SK L+L +G+ ++ ++
Sbjct: 252 MLLRLYKEIERDKLELDVQLVNDIIMGFAKSGDPSKALQLLGMAQATGLSAKTATLVSII 311
Query: 138 KNLESSPD--EARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLVDVMKKKGY 195
L S EA F L + + ++ YN +L+ G +++ +V M+K+G
Sbjct: 312 SALADSGRTLEAEALFE-ELRQSGIKPRTRAYNALLKGYVKTGPLKDAESMVSEMEKRGV 370
Query: 196 GVASHVRNKMTEKFEKEG-LESDLEKLKGIFATGSIDNSIEKVASRICKVVRSDIWGDDV 254
H + + + + G ES ++V ++ DV
Sbjct: 371 SPDEHTYSLLIDAYVNAGRWES-------------------------ARIVLKEMEAGDV 405
Query: 255 ERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGRE 314
+ + FS L F + E +K + + G VK D YN + G+
Sbjct: 406 QPN----SFVFSRLLAGF---RDRGEWQKTFQVLKEMKSIG-VKPDRQFYNVVIDTFGKF 457
Query: 315 DCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCC 374
+C+D D M S+G E +R +D + CK+
Sbjct: 458 NCLDHAMTTFDRMLSEGIE-------------PDRVTWNTLIDCH-----CKHG------ 493
Query: 375 TFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAM 434
R IV + + G + N ++ + R + ++L M
Sbjct: 494 ----RHIVAEEMFE---------AMERRGCLPCATTYNIMINSYGDQERWDDMKRLLGKM 540
Query: 435 EEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDL 494
+ G + + + + +G+ ++A E ++ M++ G M+ +LI + G
Sbjct: 541 KSQGILPNVVTHTTLVDVYGKSGRFNDAIECLEEMKSVGLKPSSTMYNALINAYAQRGLS 600
Query: 495 DKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYE 554
++A + F+ M +G + A++ L+N + R +A V ++E +KP TY
Sbjct: 601 EQAVNAFRVMT-SDGLKPSLLALNSLINAFGEDRRDAEAFA-VLQYMKENGVKPDVVTYT 658
Query: 555 ELIKNLL 561
L+K L+
Sbjct: 659 TLMKALI 665
>gi|255660872|gb|ACU25605.1| pentatricopeptide repeat-containing protein [Verbena officinalis]
Length = 484
Score = 65.5 bits (158), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 73/364 (20%), Positives = 150/364 (41%), Gaps = 48/364 (13%)
Query: 258 LRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCI 317
+R+L +F ++LV V+ + + AL FFRW E S +H+ ++ + +LGR +
Sbjct: 3 IRNLVPSFDHELVYNVLHS-SNTXEHALQFFRWVERSNLFEHNRETHLKIIEILGRASKL 61
Query: 318 DRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFL 377
+ +L +M KG E + + V ++ + + +V+E+V +++
Sbjct: 62 NHARCILLDMPKKGLEWDEDMWVMMIDSYGKEGIVQESVKMFQ----------------- 104
Query: 378 LRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEG 437
+++ + ++ + N++ K ++ GR + M
Sbjct: 105 --------KMEELXVERTIKSY------------NALFKVILRRGRYMMAKRYFNKMLSE 144
Query: 438 GFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKA 497
G + + + + + +GK + AN F + M++ + ++I G+ +++A
Sbjct: 145 GIEPTRHTFNVMIWGFFLSGKVETANRFFEDMKSREISPDVVTYNTMINGYYRVKKMEEA 204
Query: 498 ADCFQKMVEKEGTSHAGYAI--DLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEE 555
F VE +G + + L+ Y S ++ DA + V ++ +KP TY
Sbjct: 205 EKYF---VEMKGRNIEPTVVTYTTLIKGYVSVDQVDDALRLVZE-MKGXGIKPNAITYST 260
Query: 556 LIKNLLVQRGFKDALSLLCLMKDHGFPPFVDP-FIKYVS---KSGTSDDAIAFLKGMTSK 611
L+ L +A JL M D P + F++ + KSG D A LK M
Sbjct: 261 LLPGLCNAEKMSEARVJLKEMMDKYLAPTDNSIFMRLIXSHCKSGNLDAAADVLKAMIRL 320
Query: 612 RFPS 615
P+
Sbjct: 321 SVPT 324
Score = 55.5 bits (132), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 78/366 (21%), Positives = 158/366 (43%), Gaps = 22/366 (6%)
Query: 265 FSNDLVKFVVDKLGDEP--KKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWK 322
+ D+ ++D G E ++++ F+ EE V+ SYNA+ V+ R +
Sbjct: 78 WDEDMWVMMIDSYGKEGIVQESVKMFQKMEEL-XVERTIKSYNALFKVILRRGRYMMAKR 136
Query: 323 VLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIV 382
++M S+G E T ++ F V+ A +E + + P V ++
Sbjct: 137 YFNKMLSEGIEPTRHTFNVMIWGFFLSGKVETANRFFEDMKSREISPDVVTYNTMINGYY 196
Query: 383 VSKQLDMRLFSKVVRVFRE-NGNVL--TDAMLNSVLKALISVGRMGECNKILKAMEEGGF 439
K+++ + + F E G + T +++K +SV ++ + ++++ M+ G
Sbjct: 197 RVKKME-----EAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDALRLVZEMKGXGI 251
Query: 440 IASSNMKSKIAFRLSSAGKKDEANEFM-DHMEASGSDVGDKMWVSLIKGHCVAGDLDKAA 498
++ S + L +A K EA + + M+ + + +++ LI HC +G+LD AA
Sbjct: 252 KPNAITYSTLLPGLCNAEKMSEARVJLKEMMDKYLAPTDNSIFMRLIXSHCKSGNLDAAA 311
Query: 499 DCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCV-REYDLKPWHT------ 551
D + M+ + AG+ L+ +C + A K + + ++ L+P T
Sbjct: 312 DVLKAMIRLSVPTEAGHX-GXLIENFCKVGQYDKAVKLLDKLIEKDIILRPQSTLHLEPS 370
Query: 552 TYEELIKNLLVQRGFKDALSLLCLMKDHGF--PPFVDPFIKYVSKSGTSDDAIAFLKGMT 609
Y +I+ L A +L+ + G P ++ I+ S+ G+ D A LK M
Sbjct: 371 AYNPMIEYLCNNGQAXKAETLVRQLXKLGVQDPTALNTLIRGHSQEGSPDSAFELLKIML 430
Query: 610 SKRFPS 615
++ S
Sbjct: 431 RRKVDS 436
>gi|449436958|ref|XP_004136259.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g18475-like [Cucumis sativus]
gi|449497032|ref|XP_004160294.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g18475-like [Cucumis sativus]
Length = 504
Score = 65.5 bits (158), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 77/305 (25%), Positives = 140/305 (45%), Gaps = 12/305 (3%)
Query: 280 EPKKAL-IFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMET 338
+P+ AL IF +E+ GF H+ ++Y ++ L + VL +M ++
Sbjct: 62 DPQHALDIFNMVSEQQGF-NHNHATYASIIQNLAKYKKFQAIDGVLHQMTYDTCKVHEGI 120
Query: 339 CVKVLGRFSERNMVKEAVDL-YEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVR 397
+ ++ FS+ +M + +D+ Y + KPS+ + L +V S ++D L K++
Sbjct: 121 FLNLMKHFSKSSMHERVLDMFYAIKSIVREKPSLKAISTCLNLLVESDRVD--LARKLLV 178
Query: 398 VFRENGNVLTDA-MLNSVLKALISVGRMGECNKILKAMEEGGFIASSNM--KSKIAFRLS 454
R N+ + + N ++K G + +++K M+ ++ N+ S + L
Sbjct: 179 NARSKLNLRPNTCIFNILVKHHCRNGDLQAAFEVVKEMKSAR-VSYPNLVTYSTLIGGLC 237
Query: 455 SAGKKDEANEFMDHMEASGSDVGDKM-WVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHA 513
GK EA EF + M + + + D + + LI G C G +D+A + M + G S
Sbjct: 238 ENGKLKEAIEFFEEMVSKDNILPDALTYNILINGFCQRGKVDRARTILEFM-KSNGCSPN 296
Query: 514 GYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLL 573
+ +L+N YC + R +A K V N ++ +KP +Y LI L +A LL
Sbjct: 297 VFNYSVLMNGYCKEGRLQEA-KEVFNEIKSLGMKPDTISYTTLINCLCRTGRVDEATELL 355
Query: 574 CLMKD 578
MKD
Sbjct: 356 QQMKD 360
Score = 43.5 bits (101), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 80/402 (19%), Positives = 157/402 (39%), Gaps = 49/402 (12%)
Query: 111 FSDVNDISKQLELSGVVFTHEMVLKVLKNLESSPDEARRFFNWVLEKESERLSSKTYNLM 170
F+ +I K+ + S + +HE +K++KN E P A FN V E++ + TY +
Sbjct: 33 FATSKEIQKKSKSSYI--SHETAIKLIKN-ERDPQHALDIFNMVSEQQGFNHNHATYASI 89
Query: 171 LRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRNKMTEKFEKEGLESDLEKLKGIFATGSI 230
++ + + Q G++ M V + + + F K + + L +A SI
Sbjct: 90 IQNLAKYKKFQAIDGVLHQMTYDTCKVHEGIFLNLMKHFSKSSMHERV--LDMFYAIKSI 147
Query: 231 ---DNSIEKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIF 287
S++ +++ + +V SD V + L+ KL P +
Sbjct: 148 VREKPSLKAISTCLNLLVESD-------------RVDLARKLLVNARSKLNLRPNTCIF- 193
Query: 288 FRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEM-EMETCVKVLGRF 346
+ VKH + + A+ ++V+ EM+S + T ++G
Sbjct: 194 ------NILVKHHCRNGDLQAA-----------FEVVKEMKSARVSYPNLVTYSTLIGGL 236
Query: 347 SERNMVKEAVDLYEFAMACKN-KPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENG-- 403
E +KEA++ +E ++ N P L+ ++D ++ + NG
Sbjct: 237 CENGKLKEAIEFFEEMVSKDNILPDALTYNILINGFCQRGKVDRA--RTILEFMKSNGCS 294
Query: 404 -NVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEA 462
NV ++L + GR+ E ++ ++ G + + + L G+ DEA
Sbjct: 295 PNVFNYSVL---MNGYCKEGRLQEAKEVFNEIKSLGMKPDTISYTTLINCLCRTGRVDEA 351
Query: 463 NEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKM 504
E + M+ + ++ G C G D+A D QK+
Sbjct: 352 TELLQQMKDKDCRADTVTFNVMLGGLCREGRFDEALDMVQKL 393
>gi|449449910|ref|XP_004142707.1| PREDICTED: pentatricopeptide repeat-containing protein At1g02060,
chloroplastic-like [Cucumis sativus]
Length = 757
Score = 65.5 bits (158), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 83/383 (21%), Positives = 158/383 (41%), Gaps = 59/383 (15%)
Query: 273 VVDKLG--DEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCID--RFWKVLDEMR 328
V+ LG + KAL FF WA+E G+ H E SY +M +LGR ++ R + E R
Sbjct: 82 VLQTLGFLRDTSKALQFFNWAQEMGYT-HTEQSYFSMLEILGRNRHLNTARNFLFSIEKR 140
Query: 329 SKGY-EMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQL 387
S+G ++E ++ F+ + +E++ ++ + PSV LL ++ +
Sbjct: 141 SRGIVKLEARFFNSLMRNFNRAGLFQESIKVFTIMKSHGVSPSVVTFNSLLTILLKRGRT 200
Query: 388 DM--RLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNM 445
+M +++ +++ + + T N +++ G + + +I + G
Sbjct: 201 NMAKKVYDEMLSTYGVTPDTFT---FNILIRGFCMNGMVDDGFRIFNDLSRFGCEPDVVT 257
Query: 446 KSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKM--WVSLIKGHCVAGDLDKAADCFQK 503
+ + L AGK A + M D+ + + +LI+G+C +++KA F++
Sbjct: 258 YNTLVDGLCRAGKVTVAYNVVKGMGKKSVDLNPNVVTYTTLIRGYCAKREIEKALAVFEE 317
Query: 504 MVEK-----------------------------EGTSHAGY------AIDLLVNTYCSKN 528
MV + EGT+ G + L++ +C
Sbjct: 318 MVNQGLKANNITYNTLIKGLCEARKFEKIKDILEGTAGDGTFSPDTCTFNTLMHCHCHAG 377
Query: 529 RAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLL-------CLMKDHGF 581
DA K V + E ++P TY L+++L ++ A LL L+ G
Sbjct: 378 NLDDALK-VFERMSELKIQPDSATYSALVRSLCQGGHYEKAEDLLDKLLERKILLSGDGC 436
Query: 582 PPFV---DPFIKYVSKSGTSDDA 601
P V +P KY+ ++G + A
Sbjct: 437 KPLVAAYNPIFKYLCETGKTKKA 459
Score = 43.5 bits (101), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 106/533 (19%), Positives = 203/533 (38%), Gaps = 73/533 (13%)
Query: 133 VLKVLKNLESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLVDVMKK 192
VL+ L L + +A +FFNW E + ++Y ML I+G + + + ++K
Sbjct: 82 VLQTLGFLRDT-SKALQFFNWAQEMGYTH-TEQSYFSMLEILGRNRHLNTARNFLFSIEK 139
Query: 193 KGYGVA---SHVRNKMTEKFEKEGLESDLEKLKGIFATGSIDNSI---EKVASRICKVVR 246
+ G+ + N + F + GL + K+ I + + S+ + + + K R
Sbjct: 140 RSRGIVKLEARFFNSLMRNFNRAGLFQESIKVFTIMKSHGVSPSVVTFNSLLTILLKRGR 199
Query: 247 SDIWGDDVERQLRDLNVT---FS-NDLVK-FVVDKLGDEPKKALIFFRWAEESGF-VKHD 300
+++ + L VT F+ N L++ F ++ + D+ F + + S F + D
Sbjct: 200 TNMAKKVYDEMLSTYGVTPDTFTFNILIRGFCMNGMVDDG-----FRIFNDLSRFGCEPD 254
Query: 301 ESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYE 360
+YN + L R + + V+ + M K++VDL
Sbjct: 255 VVTYNTLVDGLCRAGKVTVAYNVV------------------------KGMGKKSVDL-- 288
Query: 361 FAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRE---NGNVLTDAMLNSVLKA 417
P+V T L+R ++++ K + VF E G + N+++K
Sbjct: 289 -------NPNVVTYTTLIRGYCAKREIE-----KALAVFEEMVNQGLKANNITYNTLIKG 336
Query: 418 LISVGRMGECNKILKAME-EGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDV 476
L + + IL+ +G F + + + AG D+A + + M
Sbjct: 337 LCEARKFEKIKDILEGTAGDGTFSPDTCTFNTLMHCHCHAGNLDDALKVFERMSELKIQP 396
Query: 477 GDKMWVSLIKGHCVAGDLDKAADCFQKMVEK------EGTSHAGYAIDLLVNTYCSKNRA 530
+ +L++ C G +KA D K++E+ +G A + + C +
Sbjct: 397 DSATYSALVRSLCQGGHYEKAEDLLDKLLERKILLSGDGCKPLVAAYNPIFKYLCETGKT 456
Query: 531 IDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPFIK 590
A K +R P +Y+ LI + F+ LL LM F P + +
Sbjct: 457 KKAEKAFRQLMRRGTQDP--PSYKTLIMGHCKEGTFESGYELLVLMLRKDFLPDFETYES 514
Query: 591 YVSKSGTSDDAIAFL----KGMTSKRFPSMSVVLCLFAAFFQARRHSEAQDLL 639
++ D + L K + S P+ S + A + R SE+ L+
Sbjct: 515 LINGLLHMDKPLLALQSLEKMLRSSHRPNSSTFHSILAKLLEQGRTSESASLI 567
>gi|9755668|emb|CAC01820.1| putative protein [Arabidopsis thaliana]
Length = 532
Score = 65.5 bits (158), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 101/455 (22%), Positives = 192/455 (42%), Gaps = 54/455 (11%)
Query: 231 DNSIEKVASRICKVVRSDIWGD--DVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFF 288
D + + +I K+V+ D D ++ +L + +V SN+LV ++ ++ ++ + A FF
Sbjct: 50 DELVSEDVGKISKLVK-DCGSDRKELRNKLEECDVKPSNELVVEILSRVRNDWETAFTFF 108
Query: 289 RWA-EESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEM-EMETCVKVLGRF 346
WA ++ G+V+ Y++M S+LG+ D W ++DEMR + +T + ++ ++
Sbjct: 109 VWAGKQQGYVR-SVREYHSMISILGKMRKFDTAWTLIDEMRKFSPSLVNSQTLLIMIRKY 167
Query: 347 SERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQL----------------DMR 390
+ V +A++ + K + ++ LL + K + D +
Sbjct: 168 CAVHDVGKAINTFHAYKRFKLEMGIDDFQSLLSALCRYKNVSDAGHLIFCNKDKYPFDAK 227
Query: 391 LFSKVV--------------RVFRENGNVLTDAMLNSVLKALISVGRMGECNKILK---A 433
F+ V+ RV+ E GNV + S + + G NK+LK
Sbjct: 228 SFNIVLNGWCNVIGSPREAERVWMEMGNVGVKHDVVSYSSMISCYSKGGSLNKVLKLFDR 287
Query: 434 MEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEAS-GSDVGDKMWVSLIKGHCVAG 492
M++ + + + L+ A EA M ME G + + SLIK C A
Sbjct: 288 MKKECIEPDRKVYNAVVHALAKASFVSEARNLMKTMEEEKGIEPNVVTYNSLIKPLCKAR 347
Query: 493 DLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCV---REYDLKPW 549
++A F +M+EK + + TY + R + + V + R+ +P
Sbjct: 348 KTEEAKQVFDEMLEK--------GLFPTIRTYHAFMRILRTGEEVFELLAKMRKMGCEPT 399
Query: 550 HTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPFIKYVSK---SGTSDDAIAFLK 606
TY LI+ L R F + L L MK+ P + +I + +G ++A + K
Sbjct: 400 VETYIMLIRKLCRWRDFDNVLLLWDEMKEKTVGPDLSSYIVMIHGLFLNGKIEEAYGYYK 459
Query: 607 GMTSKRFPSMSVVLCLFAAFFQARRHSEAQDLLSK 641
M K V + ++F ++++E + SK
Sbjct: 460 EMKDKGMRPNENVEDMIQSWFSGKQYAEQRITDSK 494
Score = 42.7 bits (99), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 94/443 (21%), Positives = 170/443 (38%), Gaps = 80/443 (18%)
Query: 86 CSYSSEPAMEQKESDFTVVSDIFYKFSDVNDISKQLELSGVVFTHEMVLKVLKNLESSPD 145
CS S E E +V D SD ++ +LE V ++E+V+++L + + +
Sbjct: 46 CSISDELVSEDVGKISKLVKDCG---SDRKELRNKLEECDVKPSNELVVEILSRVRNDWE 102
Query: 146 EARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRNKM 205
A FF W +++ S + Y+ M+ I+G W L+D M+K + + N
Sbjct: 103 TAFTFFVWAGKQQGYVRSVREYHSMISILGKMRKFDTAWTLIDEMRK----FSPSLVNSQ 158
Query: 206 TEKFEKEGLESDLEKLKGIFATGSIDNSIEKVASRICKVVRSDIWGDDVERQLRDL---- 261
T L + K + G N+ K + ++ DD + L L
Sbjct: 159 T-------LLIMIRKYCAVHDVGKAINTFHAY-----KRFKLEMGIDDFQSLLSALCRYK 206
Query: 262 NVTFSNDLVKFVVDKLGDEPKKALIFFR---------------WAEESGF-VKHDESSYN 305
NV+ + L+ DK + K I W E VKHD SY+
Sbjct: 207 NVSDAGHLIFCNKDKYPFDAKSFNIVLNGWCNVIGSPREAERVWMEMGNVGVKHDVVSYS 266
Query: 306 AMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMAC 365
+M S + +++ K+ D M+ + E + + V+ ++ + V EA +
Sbjct: 267 SMISCYSKGGSLNKVLKLFDRMKKECIEPDRKVYNAVVHALAKASFVSEARN-------- 318
Query: 366 KNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMG 425
L++ + K ++ NV+T NS++K L +
Sbjct: 319 -----------LMKTMEEEKGIE--------------PNVVT---YNSLIKPLCKARKTE 350
Query: 426 ECNKILKAMEEGGFIASSNMKSKIAF-RLSSAGKKDEANEFMDHMEASGSDVGDKMWVSL 484
E ++ M E G + +++ AF R+ G +E E + M G + + ++ L
Sbjct: 351 EAKQVFDEMLEKGLFPT--IRTYHAFMRILRTG--EEVFELLAKMRKMGCEPTVETYIML 406
Query: 485 IKGHCVAGDLDKAADCFQKMVEK 507
I+ C D D + +M EK
Sbjct: 407 IRKLCRWRDFDNVLLLWDEMKEK 429
>gi|255660946|gb|ACU25642.1| pentatricopeptide repeat-containing protein [Duranta serratifolia]
Length = 484
Score = 65.5 bits (158), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 87/393 (22%), Positives = 166/393 (42%), Gaps = 53/393 (13%)
Query: 258 LRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCI 317
+R+L +F ++LV V+ + AL FFRW E S +H+ +++ + +LGR +
Sbjct: 3 IRNLVPSFDHELVYNVLHG-AKNXEHALQFFRWVERSNLFEHNRETHHKIIEILGRASKL 61
Query: 318 DRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFL 377
+ +L +M KG E + + V ++ + + +V+E+V L++ + ++ L
Sbjct: 62 NHARCILLDMPKKGLEWDEDLWVLLIDSYGKAGIVQESVKLFQKMEELGVERTIKSYDAL 121
Query: 378 LRKIVVSKQLDM--RLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAME 435
+ I+ + M R F+K++ GN T N ++
Sbjct: 122 FKVILRRGRYMMAKRYFNKML----SEGNEPTRHTFNIMI-------------------- 157
Query: 436 EGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLD 495
GF S GK + AN F + M++ + ++I G+ ++
Sbjct: 158 -WGFFLS--------------GKVETANRFFEDMKSREIMPDVVTYNTMIXGYYRVKKME 202
Query: 496 KAADCFQKMVEKEGTSHAGYAIDL--LVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTY 553
+A F VE +G + + L+ Y S +R DA + V ++ + +KP TY
Sbjct: 203 EAEKYF---VEMKGRNIEPTVVTYTTLIKGYVSVDRVDDALRLVEE-MKGFGIKPNAITY 258
Query: 554 EELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDP-FIKYVS---KSGTSDDAIAFLKGMT 609
L+ L + +A S+L M + P + F++ +S K+G D A LK M
Sbjct: 259 STLLPGLCNAQKMSEARSILKEMVEKYITPTDNSIFLRLISGQCKAGDLDAAADVLKAMI 318
Query: 610 SKRFPSMSVVL-CLFAAFFQARRHSEAQDLLSK 641
P+ + L + +A ++ +A LL +
Sbjct: 319 RLSVPTEAGHYGVLIENYCKAGQYDQAVKLLDR 351
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 111/510 (21%), Positives = 196/510 (38%), Gaps = 111/510 (21%)
Query: 128 FTHEMVLKVLKNLESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLV 187
F HE+V VL ++ + A +FF WV + +T++ ++ I+G + ++
Sbjct: 10 FDHELVYNVLHGAKNX-EHALQFFRWVERSNLFEHNRETHHKIIEILGRASKLNHARCIL 68
Query: 188 DVMKKKG--------------YGVASHVRN--KMTEKFEKEGLESDLEKLKGIFATGSID 231
M KKG YG A V+ K+ +K E+ G+E ++ +F
Sbjct: 69 LDMPKKGLEWDEDLWVLLIDSYGKAGIVQESVKLFQKMEELGVERTIKSYDALF------ 122
Query: 232 NSIEKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALI-FFRW 290
KV R + + + R N S G+EP + W
Sbjct: 123 ----KVILRRGRYMMAK----------RYFNKMLSE----------GNEPTRHTFNIMIW 158
Query: 291 AEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETC-VKVLGRFSER 349
GF + G+ + +RF+ ++M+S+ ++ T + G + +
Sbjct: 159 ----GFF------------LSGKVETANRFF---EDMKSREIMPDVVTYNTMIXGYYRVK 199
Query: 350 NMVKEAVDLYEFAMACKN-KPSVNCCTFLLRKIVVSKQLD--MRLFSKVVRVFRENGNVL 406
M E + Y M +N +P+V T L++ V ++D +RL ++ + F N +
Sbjct: 200 KM--EEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDRVDDALRLVEEM-KGFGIKPNAI 256
Query: 407 TDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSS----AGKKDEA 462
T +++L L + +M E ILK M E + N I RL S AG D A
Sbjct: 257 T---YSTLLPGLCNAQKMSEARSILKEMVEKYITPTDN---SIFLRLISGQCKAGDLDAA 310
Query: 463 NEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVN 522
+ + M + LI+ +C AG D+A +++EK+ + L +
Sbjct: 311 ADVLKAMIRLSVPTEAGHYGVLIENYCKAGQYDQAVKLLDRLIEKDIILRPQSTLHLEPS 370
Query: 523 TYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFP 582
Y N + EY T E + L++ G +D +L L++ H
Sbjct: 371 AY--------------NPLIEYLCNNGQTAKAESLVRQLMKLGVQDPTALNALIRGH--- 413
Query: 583 PFVDPFIKYVSKSGTSDDAIAFLKGMTSKR 612
S+ G+ D A LK M ++
Sbjct: 414 ----------SQEGSPDSAFELLKIMLRRK 433
>gi|10177016|dbj|BAB10204.1| maize crp1 protein-like [Arabidopsis thaliana]
Length = 680
Score = 65.5 bits (158), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 107/523 (20%), Positives = 209/523 (39%), Gaps = 49/523 (9%)
Query: 121 LELSGVVFTHEMVLKVLKNLESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLV 180
L+ + F++E++ +L + + + + + L + + L+ TYN ++ + +
Sbjct: 128 LQKHNLCFSYELLYSILIH---ALGRSEKLYEAFLLSQKQTLTPLTYNALIGACARNNDI 184
Query: 181 QEFWGLVDVMKKKGYGVASHVRNKMTEKFEKEGLESDLEKLKGIFATGSIDNSIEKVAS- 239
++ L+ M++ GY +SD + + + N I+ V
Sbjct: 185 EKALNLIAKMRQDGY-------------------QSDFVNYSLVIQSLTRSNKIDSVMLL 225
Query: 240 RICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKH 299
R+ K ++ER +L+V ND++ K GD P KAL A+ +G +
Sbjct: 226 RLYK---------EIERDKLELDVQLVNDIIMGFA-KSGD-PSKALQLLGMAQATG-LSA 273
Query: 300 DESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLY 359
++ ++ S L + +E+R G + +L + + +K+A +
Sbjct: 274 KTATLVSIISALADSGRTLEAEALFEELRQSGIKPRTRAYNALLKGYVKTGPLKDAESMV 333
Query: 360 EFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALI 419
P + + L+ V + + + +++V E G+V ++ + S L L
Sbjct: 334 SEMEKRGVSPDEHTYSLLIDAYVNAGRWES---ARIVLKEMEAGDVQPNSFVFSRL--LA 388
Query: 420 SVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGK---KDEANEFMDHMEASGSDV 476
GE K + ++E I + + + GK D A D M + G +
Sbjct: 389 GFRDRGEWQKTFQVLKEMKSIGVKPDRQFYNVVIDTFGKFNCLDHAMTTFDRMLSEGIEP 448
Query: 477 GDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKF 536
W +LI HC G A + F+ M E+ G ++++N+Y + R D +
Sbjct: 449 DRVTWNTLIDCHCKHGRHIVAEEMFEAM-ERRGCLPCATTYNIMINSYGDQERWDDMKRL 507
Query: 537 VHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPP---FVDPFIKYVS 593
+ ++ + P T+ L+ F DA+ L MK G P + I +
Sbjct: 508 LGK-MKSQGILPNVVTHTTLVDVYGKSGRFNDAIECLEEMKSVGLKPSSTMYNALINAYA 566
Query: 594 KSGTSDDAIAFLKGMTSKRF-PSMSVVLCLFAAFFQARRHSEA 635
+ G S+ A+ + MTS PS+ + L AF + RR +EA
Sbjct: 567 QRGLSEQAVNAFRVMTSDGLKPSLLALNSLINAFGEDRRDAEA 609
Score = 52.4 bits (124), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 97/488 (19%), Positives = 185/488 (37%), Gaps = 84/488 (17%)
Query: 84 MICSYSSEPAMEQKESDFTVVSDIFYKFSDVNDISKQLEL------SGVVFTHEMVLKVL 137
M+ E ++ E D +V+DI F+ D SK L+L +G+ ++ ++
Sbjct: 223 MLLRLYKEIERDKLELDVQLVNDIIMGFAKSGDPSKALQLLGMAQATGLSAKTATLVSII 282
Query: 138 KNLESSPD--EARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLVDVMKKKGY 195
L S EA F L + + ++ YN +L+ G +++ +V M+K+G
Sbjct: 283 SALADSGRTLEAEALFEE-LRQSGIKPRTRAYNALLKGYVKTGPLKDAESMVSEMEKRGV 341
Query: 196 GVASHVRNKMTEKFEKEG-LESDLEKLKGIFATGSIDNSIEKVASRICKVVRSDIWGDDV 254
H + + + + G ES ++V ++ DV
Sbjct: 342 SPDEHTYSLLIDAYVNAGRWES-------------------------ARIVLKEMEAGDV 376
Query: 255 ERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGRE 314
+ + FS L F + E +K + + G VK D YN + G+
Sbjct: 377 QPN----SFVFSRLLAGF---RDRGEWQKTFQVLKEMKSIG-VKPDRQFYNVVIDTFGKF 428
Query: 315 DCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCC 374
+C+D D M S+G E +R +D + CK+
Sbjct: 429 NCLDHAMTTFDRMLSEGIE-------------PDRVTWNTLIDCH-----CKHG------ 464
Query: 375 TFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAM 434
R IV + + G + N ++ + R + ++L M
Sbjct: 465 ----RHIVAEEMFE---------AMERRGCLPCATTYNIMINSYGDQERWDDMKRLLGKM 511
Query: 435 EEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDL 494
+ G + + + + +G+ ++A E ++ M++ G M+ +LI + G
Sbjct: 512 KSQGILPNVVTHTTLVDVYGKSGRFNDAIECLEEMKSVGLKPSSTMYNALINAYAQRGLS 571
Query: 495 DKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKF-VHNCVREYDLKPWHTTY 553
++A + F+ M +G + A++ L+N + R DA F V ++E +KP TY
Sbjct: 572 EQAVNAFRVMTS-DGLKPSLLALNSLINAFGEDRR--DAEAFAVLQYMKENGVKPDVVTY 628
Query: 554 EELIKNLL 561
L+K L+
Sbjct: 629 TTLMKALI 636
>gi|225436658|ref|XP_002276327.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g28010-like [Vitis vinifera]
Length = 728
Score = 65.5 bits (158), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 56/203 (27%), Positives = 89/203 (43%), Gaps = 5/203 (2%)
Query: 412 NSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEA 471
N+++ L ++ E +L ME G +S + + L G+ DEA E ++ M+
Sbjct: 183 NTLINGLCKAKKLKEAVGLLLEMEAAGCFPNSVTCTTLMDGLCKDGRMDEAMELLEAMKK 242
Query: 472 SGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAI 531
G D ++ +LI G C G+LD+ + F +M+ K G S LV+ C +
Sbjct: 243 KGFDADVVLYGTLISGFCNNGNLDRGKELFDEMLGK-GISANVVTYSCLVHGLCRLGQWK 301
Query: 532 DACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPP---FVDPF 588
+A V N + E+ + P TY LI L A+ LL LM + G P +
Sbjct: 302 EA-NTVLNAMAEHGIHPDVVTYTGLIDGLCKDGRATHAMDLLNLMVEKGEEPSNVTYNVL 360
Query: 589 IKYVSKSGTSDDAIAFLKGMTSK 611
+ + K G DA L+ M K
Sbjct: 361 LSGLCKEGLVIDAFKILRMMIEK 383
Score = 53.1 bits (126), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 83/366 (22%), Positives = 145/366 (39%), Gaps = 44/366 (12%)
Query: 259 RDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCID 318
+D T + DL+ +V+K G+EP +YN + S L +E +
Sbjct: 331 KDGRATHAMDLLNLMVEK-GEEPSNV------------------TYNVLLSGLCKEGLVI 371
Query: 319 RFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLL 378
+K+L M KG + ++ T ++ ++ V EA+ L+ +N N TF
Sbjct: 372 DAFKILRMMIEKGKKADVVTYNTLMKGLCDKGKVDEALKLFNSMFDNENCLEPNVFTF-- 429
Query: 379 RKIVVSKQLDMRLFSKVVRVFREN------GNVLTDAMLNSVLKALISVGRMGECNKILK 432
+++ +K V++ R+ GN++T ML L + G++ E ++ K
Sbjct: 430 -NMLIGGLCKEGRLTKAVKIHRKMVKKGSCGNLVTYNML---LGGCLKAGKIKEAMELWK 485
Query: 433 AMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAG 492
+ + GF+ +S S + + A M G + + +L+ C G
Sbjct: 486 QVLDLGFVPNSFTYSILIDGFCKMRMLNIAKGLFCEMRTHGLNPALFDYNTLMASLCKEG 545
Query: 493 DLDKAADCFQKMVEKEGTSHAGYAIDLL-VNTYCSKNRAIDACKFVHNC---VREYDLKP 548
L++A FQ+M +A D++ NT +FV + E L+P
Sbjct: 546 SLEQAKSLFQEM------GNANCEPDIISFNTMIDGTLKAGDFQFVKELQMKMVEMGLRP 599
Query: 549 WHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPP---FVDPFIKYVSKSGTSDDAIAFL 605
T+ LI L +A S L M GF P D +K +S G + + I L
Sbjct: 600 DALTFSTLINRLSKLGELDEAKSALERMVASGFTPDALVYDSLLKGLSSKGDTTEIINLL 659
Query: 606 KGMTSK 611
M +K
Sbjct: 660 HQMAAK 665
Score = 46.6 bits (109), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 65/281 (23%), Positives = 108/281 (38%), Gaps = 36/281 (12%)
Query: 297 VKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAV 356
V D SYN + + L + + +L EM + G TC ++ + + EA+
Sbjct: 175 VSPDIVSYNTLINGLCKAKKLKEAVGLLLEMEAAGCFPNSVTCTTLMDGLCKDGRMDEAM 234
Query: 357 DLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNV-----LTDAML 411
+L E AM K + D+ L+ ++ F NGN+ L D ML
Sbjct: 235 ELLE-AMKKKGFDA-----------------DVVLYGTLISGFCNNGNLDRGKELFDEML 276
Query: 412 NSVLKA-----------LISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKD 460
+ A L +G+ E N +L AM E G + + L G+
Sbjct: 277 GKGISANVVTYSCLVHGLCRLGQWKEANTVLNAMAEHGIHPDVVTYTGLIDGLCKDGRAT 336
Query: 461 EANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLL 520
A + ++ M G + + + L+ G C G + A + M+EK G + L
Sbjct: 337 HAMDLLNLMVEKGEEPSNVTYNVLLSGLCKEGLVIDAFKILRMMIEK-GKKADVVTYNTL 395
Query: 521 VNTYCSKNRAIDACKFVHNCV-REYDLKPWHTTYEELIKNL 560
+ C K + +A K ++ E L+P T+ LI L
Sbjct: 396 MKGLCDKGKVDEALKLFNSMFDNENCLEPNVFTFNMLIGGL 436
Score = 45.8 bits (107), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 54/228 (23%), Positives = 92/228 (40%), Gaps = 4/228 (1%)
Query: 352 VKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAML 411
+KEAV L A P+ CT L+ + ++D + +++ ++ G +
Sbjct: 195 LKEAVGLLLEMEAAGCFPNSVTCTTLMDGLCKDGRMDEAM--ELLEAMKKKGFDADVVLY 252
Query: 412 NSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEA 471
+++ + G + ++ M G A+ S + L G+ EAN ++ M
Sbjct: 253 GTLISGFCNNGNLDRGKELFDEMLGKGISANVVTYSCLVHGLCRLGQWKEANTVLNAMAE 312
Query: 472 SGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAI 531
G + LI G C G A D MVEK G + ++L++ C + I
Sbjct: 313 HGIHPDVVTYTGLIDGLCKDGRATHAMDLLNLMVEK-GEEPSNVTYNVLLSGLCKEGLVI 371
Query: 532 DACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDH 579
DA K + + E K TY L+K L + +AL L M D+
Sbjct: 372 DAFKILRMMI-EKGKKADVVTYNTLMKGLCDKGKVDEALKLFNSMFDN 418
Score = 45.4 bits (106), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 84/397 (21%), Positives = 164/397 (41%), Gaps = 50/397 (12%)
Query: 175 GVHGLVQEFWGLVDVMKKKGYGV-ASHVRNKMTEKFEKEGLESDLEKLKGIFATGSIDNS 233
G+H V + GL+D + K G A + N M EK E+ + L G+ G + ++
Sbjct: 314 GIHPDVVTYTGLIDGLCKDGRATHAMDLLNLMVEKGEEPSNVTYNVLLSGLCKEGLVIDA 373
Query: 234 IEKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEE 293
+ + I K ++D+ VT+ N L+K + DK G + +F +
Sbjct: 374 FKILRMMIEKGKKADV-------------VTY-NTLMKGLCDK-GKVDEALKLFNSMFDN 418
Query: 294 SGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVK 353
++ + ++N + L +E + + K+ +M KG + T +LG + +K
Sbjct: 419 ENCLEPNVFTFNMLIGGLCKEGRLTKAVKIHRKMVKKGSCGNLVTYNMLLGGCLKAGKIK 478
Query: 354 EAVDLYEFAMACKNKPSVNCCTFL------LRKIVVSKQL--DMR-------------LF 392
EA++L++ + P+ + L +R + ++K L +MR L
Sbjct: 479 EAMELWKQVLDLGFVPNSFTYSILIDGFCKMRMLNIAKGLFCEMRTHGLNPALFDYNTLM 538
Query: 393 SKVVR---------VFRENGNVLTDAML---NSVLKALISVGRMGECNKILKAMEEGGFI 440
+ + + +F+E GN + + N+++ + G ++ M E G
Sbjct: 539 ASLCKEGSLEQAKSLFQEMGNANCEPDIISFNTMIDGTLKAGDFQFVKELQMKMVEMGLR 598
Query: 441 ASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADC 500
+ S + RLS G+ DEA ++ M ASG ++ SL+KG GD + +
Sbjct: 599 PDALTFSTLINRLSKLGELDEAKSALERMVASGFTPDALVYDSLLKGLSSKGDTTEIINL 658
Query: 501 FQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFV 537
+M K GT + ++ C + +D + +
Sbjct: 659 LHQMAAK-GTVLDRKIVSTILTCLCHSIQEVDVMELL 694
>gi|224135699|ref|XP_002322139.1| predicted protein [Populus trichocarpa]
gi|222869135|gb|EEF06266.1| predicted protein [Populus trichocarpa]
Length = 866
Score = 65.5 bits (158), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 70/358 (19%), Positives = 144/358 (40%), Gaps = 7/358 (1%)
Query: 282 KKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVK 341
+++L F+ + + K +E Y M S+LGRE +++ + +EM + G + +
Sbjct: 124 QRSLRLFKHMQRQIWCKPNEHIYTIMISLLGREGLLEKCSDIFEEMGAHGVSRSVFSYTA 183
Query: 342 VLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRE 401
++ + + +++L E + PS+ ++ LD + R
Sbjct: 184 LINSYGRNGKYEVSLELLERMKKERVSPSILTYNTVINS-CARGGLDWEGLLGLFAEMRH 242
Query: 402 NGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDE 461
G N++L A + G E + + M EGG + + + + D+
Sbjct: 243 EGIQPDIVTYNTLLCACSNRGLGDEAEMVFRTMNEGGVVPDITTYTYLVDTFGKLNRLDK 302
Query: 462 ANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLV 521
+E + M ++G+ + L++ + G+++ A F +++++ G +L+
Sbjct: 303 VSELLKEMASTGNVPEISSYNVLLEAYARIGNIEDATGVF-RLMQEAGCVPNAETYSILL 361
Query: 522 NTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGF 581
Y R D + + ++ + +P TY LI FK+ ++L M +
Sbjct: 362 GLYGKHGR-YDEVRELFLEMKVSNTEPDAATYNTLIDVFGEGGYFKEVVTLFHDMAEENV 420
Query: 582 PPFVDPF---IKYVSKSGTSDDAIAFLKGMTSK-RFPSMSVVLCLFAAFFQARRHSEA 635
P ++ + I K G DDA L M+ K PS + A+ QA + EA
Sbjct: 421 EPNMETYEGLIFACGKGGLHDDAKKILLHMSEKGMIPSSKAYTGVIEAYGQAAMYEEA 478
Score = 52.8 bits (125), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 55/269 (20%), Positives = 107/269 (39%), Gaps = 16/269 (5%)
Query: 326 EMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSK 385
EMR +G + ++ T +L S R + EA ++ P + T+L+
Sbjct: 239 EMRHEGIQPDIVTYNTLLCACSNRGLGDEAEMVFRTMNEGGVVPDITTYTYLVDTFGKLN 298
Query: 386 QLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNM 445
+LD S++++ GNV + N +L+A +G + + + + M+E G + ++
Sbjct: 299 RLDK--VSELLKEMASTGNVPEISSYNVLLEAYARIGNIEDATGVFRLMQEAGCVPNAET 356
Query: 446 KSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMV 505
S + G+ DE E M+ S ++ + +LI G + F M
Sbjct: 357 YSILLGLYGKHGRYDEVRELFLEMKVSNTEPDAATYNTLIDVFGEGGYFKEVVTLFHDMA 416
Query: 506 EKEGTSHAGYAIDLLVNTY------CSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKN 559
E+ ++ + TY C K D K + + E + P Y +I+
Sbjct: 417 EEN--------VEPNMETYEGLIFACGKGGLHDDAKKILLHMSEKGMIPSSKAYTGVIEA 468
Query: 560 LLVQRGFKDALSLLCLMKDHGFPPFVDPF 588
+++AL L M + G P ++ +
Sbjct: 469 YGQAAMYEEALVTLNTMNEMGSKPTIETY 497
>gi|224125496|ref|XP_002319601.1| predicted protein [Populus trichocarpa]
gi|222857977|gb|EEE95524.1| predicted protein [Populus trichocarpa]
Length = 460
Score = 65.5 bits (158), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 68/261 (26%), Positives = 111/261 (42%), Gaps = 10/261 (3%)
Query: 389 MRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSK 448
++LF ++V++ E +V+T ++++ L +G ++LK MEE G + +
Sbjct: 30 VKLFDEMVKMGHEP-DVIT---YSTIINGLCKMGNTTMALQLLKKMEEKGCKPNVVAYNT 85
Query: 449 IAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKE 508
I L EA +F M G + S++ G C G +++A F++MVE+
Sbjct: 86 IIDSLCKDRLVTEAMDFFSEMVKEGIPPDVFTYSSILHGFCNLGRVNEATSLFKQMVERN 145
Query: 509 GTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKD 568
+ +L++ C K R I V + E L+P TY L+ + +
Sbjct: 146 VIPNK-VTFTILIDGLC-KKRMISEAWLVFETMTEKGLEPDVYTYNALVDGYCSRSQMDE 203
Query: 569 ALSLLCLMKDHGFPPFVDPF---IKYVSKSGTSDDAIAFLKGMTSKRF-PSMSVVLCLFA 624
A L +M G P V + I KSG D+A L M+ K P + L
Sbjct: 204 AQKLFNIMDRKGCAPNVRSYNILINGHCKSGRIDEAKGLLAEMSHKSLTPDIFTYSTLMR 263
Query: 625 AFFQARRHSEAQDLLSKCPRY 645
F Q R EAQ+LL + Y
Sbjct: 264 GFCQVGRPQEAQELLKEMCSY 284
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 80/356 (22%), Positives = 148/356 (41%), Gaps = 22/356 (6%)
Query: 264 TFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKV 323
T+S+ L F LG + +F + E + V ++ ++ + L ++ I W V
Sbjct: 117 TYSSILHGFC--NLGRVNEATSLFKQMVERN--VIPNKVTFTILIDGLCKKRMISEAWLV 172
Query: 324 LDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVV 383
+ M KG E ++ T ++ + R+ + EA L+ P+V L+
Sbjct: 173 FETMTEKGLEPDVYTYNALVDGYCSRSQMDEAQKLFNIMDRKGCAPNVRSYNILINGHCK 232
Query: 384 SKQLDMRLFSKVVRVFRENGNVLTDAMLNSVL-KALISVGRMGECNKILKAMEEGGFIAS 442
S ++D +K + + ++ D S L + VGR E ++LK M G + +
Sbjct: 233 SGRIDE---AKGLLAEMSHKSLTPDIFTYSTLMRGFCQVGRPQEAQELLKEMCSYGLLPN 289
Query: 443 SNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQ 502
S + L G DEA E + M+ S + ++ LI+G C G L+ A + F
Sbjct: 290 LITYSIVLDGLCKHGHLDEAFELLKAMQESKIEPNIFIYTILIEGMCTFGKLEAARELFS 349
Query: 503 KMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKF-----VHNCVREYDLKPWHTTYEELI 557
+ K G ++++ + +AC+ V+ C+ P TY +I
Sbjct: 350 NLFVK-GIQPTVVTYTVMISGLLKGGLSNEACELFREMAVNGCL------PNSCTYNVII 402
Query: 558 KNLLVQRGFKDALSLLCLMKDHGFPPFVDPFIKYVSKSGTSDDAIA-FLKGMTSKR 612
+ L +A+ L+ M GF F + +S +SD+ I+ F++G + R
Sbjct: 403 QGFLRNGDTPNAVRLIEEMVGKGFSADSSTF-RMLSDLESSDEIISQFMRGSSQDR 457
>gi|449463537|ref|XP_004149490.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At2g02150-like [Cucumis sativus]
Length = 786
Score = 65.5 bits (158), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 77/354 (21%), Positives = 152/354 (42%), Gaps = 18/354 (5%)
Query: 300 DESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLY 359
+E +Y ++ + + WK+L++M G ++ + T +L + + EA +++
Sbjct: 428 NEFTYTSLIDANCKAGNLTEAWKLLNDMLQAGVKLNIVTYTALLDGLCKAGRMIEAEEVF 487
Query: 360 EFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAML-NSVLKAL 418
+ P+ T L+ + +++++ + K+++ E N+ D +L S++
Sbjct: 488 RSMLKDGISPNQQVYTALVHGYIKAERMEDAM--KILKQMTE-CNIKPDLILYGSIIWGH 544
Query: 419 ISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGD 478
S ++ E IL+ M+ G A+ + + I AGK +A F M+ G +
Sbjct: 545 CSQRKLEETKLILEEMKSRGISANPVISTTIIDAYFKAGKSSDALNFFQEMQDVGVEATI 604
Query: 479 KMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVH 538
+ LI G C AG ++ A D F +M+ G L++ C KN I++ K +
Sbjct: 605 VTYCVLIDGLCKAGIVELAVDYFCRMLSL-GLQPNVAVYTSLIDGLC-KNNCIESAKKLF 662
Query: 539 NCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKD-------HGFPPFVDPFIKY 591
+ ++ + P T + LI L ++AL L+ M + H + V F
Sbjct: 663 DEMQCRGMTPDITAFTALIDGNLKHGNLQEALVLISRMTELAIEFDLHVYTSLVSGF--- 719
Query: 592 VSKSGTSDDAIAFLKGMTSKR-FPSMSVVLCLFAAFFQARRHSEAQDLLSKCPR 644
S+ G A F M K P + +CL +++ + EA +L ++ R
Sbjct: 720 -SQCGELHQARKFFNEMIEKGILPEEVLCICLLREYYKRGQLDEAIELKNEMER 772
Score = 50.1 bits (118), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 89/428 (20%), Positives = 154/428 (35%), Gaps = 39/428 (9%)
Query: 243 KVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDK----LGDEPKKALIFFRWAEESGFVK 298
K+++ D+W D + V F + L V K L ++PK AL FF+WA +
Sbjct: 107 KIIQQDLWNDP------KIVVLFDSALAPIWVSKILLGLREDPKLALKFFKWAGSQVGFR 160
Query: 299 HDESSYNAMASVLGR----EDCIDRFWKVLDEMR-------SKGYEMEMET---CVKVLG 344
H SY + ++ R D D +V+ R ++M T CV G
Sbjct: 161 HTTESYCIIVHLVFRARMYTDAHDTVKEVIMNSRMDMGFPVCNIFDMLWSTRNICVSGSG 220
Query: 345 RFS-------ERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVR 397
F E +++EA + + + P C FLL ++ SK + +L K
Sbjct: 221 VFDVLFSVFVELGLLEEANECFSRMRNFRTLPKARSCNFLLHRL--SKSGNGQLVRKFFN 278
Query: 398 VFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAG 457
G + N ++ L G + ++ M E G + + G
Sbjct: 279 DMIGAGIAPSVFTYNVMIDYLCKEGDLENSRRLFVQMREMGLSPDVVTYNSLIDGYGKVG 338
Query: 458 KKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAI 517
+E + M+ G + LI +C + +A + F +M + G
Sbjct: 339 SLEEVASLFNEMKDVGCVPDIITYNGLINCYCKFEKMPRAFEYFSEM-KNNGLKPNVVTY 397
Query: 518 DLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMK 577
L++ +C + A K + +R L P TY LI +A LL M
Sbjct: 398 STLIDAFCKEGMMQGAIKLFVD-MRRTGLLPNEFTYTSLIDANCKAGNLTEAWKLLNDML 456
Query: 578 DHGFPPFVDPF---IKYVSKSGTSDDAIAFLKGMTSKRF-PSMSVVLCLFAAFFQARRHS 633
G + + + + K+G +A + M P+ V L + +A R
Sbjct: 457 QAGVKLNIVTYTALLDGLCKAGRMIEAEEVFRSMLKDGISPNQQVYTALVHGYIKAERME 516
Query: 634 EAQDLLSK 641
+A +L +
Sbjct: 517 DAMKILKQ 524
>gi|334187687|ref|NP_197005.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|223635761|sp|Q9LFQ4.2|PP383_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At5g15010, mitochondrial; Flags: Precursor
gi|332004721|gb|AED92104.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 572
Score = 65.5 bits (158), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 101/455 (22%), Positives = 192/455 (42%), Gaps = 54/455 (11%)
Query: 231 DNSIEKVASRICKVVRSDIWGD--DVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFF 288
D + + +I K+V+ D D ++ +L + +V SN+LV ++ ++ ++ + A FF
Sbjct: 90 DELVSEDVGKISKLVK-DCGSDRKELRNKLEECDVKPSNELVVEILSRVRNDWETAFTFF 148
Query: 289 RWA-EESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEM-EMETCVKVLGRF 346
WA ++ G+V+ Y++M S+LG+ D W ++DEMR + +T + ++ ++
Sbjct: 149 VWAGKQQGYVR-SVREYHSMISILGKMRKFDTAWTLIDEMRKFSPSLVNSQTLLIMIRKY 207
Query: 347 SERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQL----------------DMR 390
+ V +A++ + K + ++ LL + K + D +
Sbjct: 208 CAVHDVGKAINTFHAYKRFKLEMGIDDFQSLLSALCRYKNVSDAGHLIFCNKDKYPFDAK 267
Query: 391 LFSKVV--------------RVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKA--- 433
F+ V+ RV+ E GNV + S + + G NK+LK
Sbjct: 268 SFNIVLNGWCNVIGSPREAERVWMEMGNVGVKHDVVSYSSMISCYSKGGSLNKVLKLFDR 327
Query: 434 MEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEAS-GSDVGDKMWVSLIKGHCVAG 492
M++ + + + L+ A EA M ME G + + SLIK C A
Sbjct: 328 MKKECIEPDRKVYNAVVHALAKASFVSEARNLMKTMEEEKGIEPNVVTYNSLIKPLCKAR 387
Query: 493 DLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCV---REYDLKPW 549
++A F +M+EK + + TY + R + + V + R+ +P
Sbjct: 388 KTEEAKQVFDEMLEK--------GLFPTIRTYHAFMRILRTGEEVFELLAKMRKMGCEPT 439
Query: 550 HTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPFIKYVSK---SGTSDDAIAFLK 606
TY LI+ L R F + L L MK+ P + +I + +G ++A + K
Sbjct: 440 VETYIMLIRKLCRWRDFDNVLLLWDEMKEKTVGPDLSSYIVMIHGLFLNGKIEEAYGYYK 499
Query: 607 GMTSKRFPSMSVVLCLFAAFFQARRHSEAQDLLSK 641
M K V + ++F ++++E + SK
Sbjct: 500 EMKDKGMRPNENVEDMIQSWFSGKQYAEQRITDSK 534
Score = 43.9 bits (102), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 94/443 (21%), Positives = 170/443 (38%), Gaps = 80/443 (18%)
Query: 86 CSYSSEPAMEQKESDFTVVSDIFYKFSDVNDISKQLELSGVVFTHEMVLKVLKNLESSPD 145
CS S E E +V D SD ++ +LE V ++E+V+++L + + +
Sbjct: 86 CSISDELVSEDVGKISKLVKDCG---SDRKELRNKLEECDVKPSNELVVEILSRVRNDWE 142
Query: 146 EARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRNKM 205
A FF W +++ S + Y+ M+ I+G W L+D M+K + + N
Sbjct: 143 TAFTFFVWAGKQQGYVRSVREYHSMISILGKMRKFDTAWTLIDEMRK----FSPSLVNSQ 198
Query: 206 TEKFEKEGLESDLEKLKGIFATGSIDNSIEKVASRICKVVRSDIWGDDVERQLRDL---- 261
T L + K + G N+ K + ++ DD + L L
Sbjct: 199 T-------LLIMIRKYCAVHDVGKAINTFHAY-----KRFKLEMGIDDFQSLLSALCRYK 246
Query: 262 NVTFSNDLVKFVVDKLGDEPKKALIFFR---------------WAEESGF-VKHDESSYN 305
NV+ + L+ DK + K I W E VKHD SY+
Sbjct: 247 NVSDAGHLIFCNKDKYPFDAKSFNIVLNGWCNVIGSPREAERVWMEMGNVGVKHDVVSYS 306
Query: 306 AMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMAC 365
+M S + +++ K+ D M+ + E + + V+ ++ + V EA +
Sbjct: 307 SMISCYSKGGSLNKVLKLFDRMKKECIEPDRKVYNAVVHALAKASFVSEARN-------- 358
Query: 366 KNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMG 425
L++ + K ++ NV+T NS++K L +
Sbjct: 359 -----------LMKTMEEEKGIE--------------PNVVT---YNSLIKPLCKARKTE 390
Query: 426 ECNKILKAMEEGGFIASSNMKSKIAF-RLSSAGKKDEANEFMDHMEASGSDVGDKMWVSL 484
E ++ M E G + +++ AF R+ G +E E + M G + + ++ L
Sbjct: 391 EAKQVFDEMLEKGLFPT--IRTYHAFMRILRTG--EEVFELLAKMRKMGCEPTVETYIML 446
Query: 485 IKGHCVAGDLDKAADCFQKMVEK 507
I+ C D D + +M EK
Sbjct: 447 IRKLCRWRDFDNVLLLWDEMKEK 469
>gi|302759537|ref|XP_002963191.1| hypothetical protein SELMODRAFT_80491 [Selaginella moellendorffii]
gi|300168459|gb|EFJ35062.1| hypothetical protein SELMODRAFT_80491 [Selaginella moellendorffii]
Length = 628
Score = 65.5 bits (158), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 75/322 (23%), Positives = 135/322 (41%), Gaps = 11/322 (3%)
Query: 299 HDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDL 358
H E + N M L R +D K +EM S+ + E ++ + + + V L
Sbjct: 264 HAEEAQNQMIEHLCRSGMLDEACKTFEEMISRNHPPSAELFNTLIHAVCKSKRLPDGVLL 323
Query: 359 YEFAMACKN---KPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVL 415
++ + K P++ ++ + +KQLD ++V G ++++
Sbjct: 324 FQRMKSMKEFYCPPNLETYNIMVDNLCKAKQLDEA--QELVNEMANYGLSPDVVTYSALV 381
Query: 416 KALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSD 475
L +G++ +L+ M + G S + I LS AGK D A ++ M+A GS
Sbjct: 382 DGLCKLGKLDRACDLLEEMSKEGVFPDSFTDASILNALSKAGKVDYALSHLETMKARGST 441
Query: 476 VGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACK 535
+ +L+ G C AG +D+A KMV + T ++ +++ C +A A
Sbjct: 442 PDLVTYNTLLDGLCKAGRIDEAITFLAKMVAAKCTPDV-FSYTIIITALCRSGQAAGAHA 500
Query: 536 FVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFV--DPFIKYVS 593
V+ L P Y L+ L + G +D L+L L P FV + +
Sbjct: 501 IFQEMVKRGVL-PDTVLYHSLLDG-LARNGLED-LALELLKTSLCKPDFVMHKMVLDGLC 557
Query: 594 KSGTSDDAIAFLKGMTSKRFPS 615
K+G ++DA ++ M FP+
Sbjct: 558 KAGKAEDACEVVERMADAGFPA 579
Score = 44.7 bits (104), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 109/517 (21%), Positives = 186/517 (35%), Gaps = 85/517 (16%)
Query: 149 RFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRNKMTEK 208
R F+W+ ++ + S TYN L + Q + M+++GY + +
Sbjct: 23 RLFDWLGRQKGYQHSVFTYNCFLDALAKANAGQLAYEKFQQMQRRGYPPDDFTYSIVLRG 82
Query: 209 FEKEG-LESDLEKLKGIFATGSIDNSI--EKVASRICKVVRSDIWGDDVERQLRDLN--- 262
K G L+ E L + +G N I V CK R DD + ++
Sbjct: 83 LCKAGELDKAKELLGQLRESGVKLNVITYSVVIDGCCKASRV----DDALEIFKTMSSGG 138
Query: 263 ------VTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDC 316
VTF N L+K + G+ +A + F + ++G + + SY+ + L +
Sbjct: 139 GCVPDVVTF-NSLLKGLCS--GERMSEAFVLFEYMAKAG-CEPNVISYSTLLDGLCKAGR 194
Query: 317 IDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTF 376
+D ++ +EM K ++ + + N V EA D CC
Sbjct: 195 LDEACRLWEEMVEKSCVPDLVAYTSFVTGLCKANRVAEACD---------------CC-- 237
Query: 377 LLRKIVV-SKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAME 435
RK+V + D FS V+ + + G+ + N +++ L G + E K + M
Sbjct: 238 --RKMVTKGSKADAVAFSTVIGILCKKGH--AEEAQNQMIEHLCRSGMLDEACKTFEEMI 293
Query: 436 E------------------------GGFIASSNMKSKIAF--------------RLSSAG 457
G + MKS F L A
Sbjct: 294 SRNHPPSAELFNTLIHAVCKSKRLPDGVLLFQRMKSMKEFYCPPNLETYNIMVDNLCKAK 353
Query: 458 KKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAI 517
+ DEA E ++ M G + +L+ G C G LD+A D ++M KEG +
Sbjct: 354 QLDEAQELVNEMANYGLSPDVVTYSALVDGLCKLGKLDRACDLLEEM-SKEGVFPDSFTD 412
Query: 518 DLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMK 577
++N SK +D ++ P TY L+ L +A++ L M
Sbjct: 413 ASILNAL-SKAGKVDYALSHLETMKARGSTPDLVTYNTLLDGLCKAGRIDEAITFLAKMV 471
Query: 578 DHGFPPFVDPF---IKYVSKSGTSDDAIAFLKGMTSK 611
P V + I + +SG + A A + M +
Sbjct: 472 AAKCTPDVFSYTIIITALCRSGQAAGAHAIFQEMVKR 508
Score = 42.4 bits (98), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 45/193 (23%), Positives = 72/193 (37%), Gaps = 5/193 (2%)
Query: 453 LSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSH 512
L+ A A E M+ G D + +++G C AG+LDKA + ++ E G
Sbjct: 48 LAKANAGQLAYEKFQQMQRRGYPPDDFTYSIVLRGLCKAGELDKAKELLGQLRE-SGVKL 106
Query: 513 AGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSL 572
++++ C +R DA + P T+ L+K L +A L
Sbjct: 107 NVITYSVVIDGCCKASRVDDALEIFKTMSSGGGCVPDVVTFNSLLKGLCSGERMSEAFVL 166
Query: 573 LCLMKDHGFPPFV---DPFIKYVSKSGTSDDAIAFLKGMTSKR-FPSMSVVLCLFAAFFQ 628
M G P V + + K+G D+A + M K P + +
Sbjct: 167 FEYMAKAGCEPNVISYSTLLDGLCKAGRLDEACRLWEEMVEKSCVPDLVAYTSFVTGLCK 226
Query: 629 ARRHSEAQDLLSK 641
A R +EA D K
Sbjct: 227 ANRVAEACDCCRK 239
Score = 39.3 bits (90), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 51/224 (22%), Positives = 86/224 (38%), Gaps = 27/224 (12%)
Query: 414 VLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASG 473
VL+ L G + + ++L + E G + S + A + D+A E M + G
Sbjct: 79 VLRGLCKAGELDKAKELLGQLRESGVKLNVITYSVVIDGCCKASRVDDALEIFKTMSSGG 138
Query: 474 SDVGDKM-WVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAID 532
V D + + SL+KG C + +A F+ M K G + L++ C R +
Sbjct: 139 GCVPDVVTFNSLLKGLCSGERMSEAFVLFEYMA-KAGCEPNVISYSTLLDGLCKAGRLDE 197
Query: 533 ACKFVHNCVREYDLKPWHTTYEELIKNL---------------LVQRG-------FKDAL 570
AC+ V E P Y + L +V +G F +
Sbjct: 198 ACRLWEEMV-EKSCVPDLVAYTSFVTGLCKANRVAEACDCCRKMVTKGSKADAVAFSTVI 256
Query: 571 SLLCLMKDHGFPPFVDPFIKYVSKSGTSDDAIAFLKGMTSKRFP 614
+LC K H + I+++ +SG D+A + M S+ P
Sbjct: 257 GILC-KKGHA-EEAQNQMIEHLCRSGMLDEACKTFEEMISRNHP 298
>gi|168049795|ref|XP_001777347.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162671323|gb|EDQ57877.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 621
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 76/331 (22%), Positives = 138/331 (41%), Gaps = 13/331 (3%)
Query: 295 GFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEM---ETCVKVLGRFSERNM 351
GF + +YN++ + L + + + +E+++ + ++ + LGR +
Sbjct: 3 GFPSPNVVTYNSLLNALAKAGQCEEAQLLFEELKAAKWTPDVVSYSCLINSLGRAGKWEA 62
Query: 352 VKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAML 411
E V + A CK P++ L+ + + Q D L +++ R+NG V
Sbjct: 63 ALEVVAEMQ-AKGCK--PNLWTYNTLVDCLGKAGQFDEAL--RLLAEMRDNGCVPDVRTY 117
Query: 412 NSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEA 471
N ++ L GR+ E + M E G + + + + + L G+ +A E ++ ME
Sbjct: 118 NCLISTLGKAGRLSEAFTLFAEMRERGCVPDTFTYNSLIYGLGKVGRSQKAMELLEEMER 177
Query: 472 SGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAI 531
G + SLI G G+ KA FQ+M ++ G L++ R
Sbjct: 178 HGCPPDVMTYSSLITGLGKDGETVKAFKLFQEM-KRRGRKPDSITFTALMDALGKAGRVD 236
Query: 532 DACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPF--- 588
DA + + ++E +KP TY LI +A +LL MK +G P V +
Sbjct: 237 DALELLDE-MKERGVKPGVVTYNALIAGFGKVGDLVEAYNLLDEMKRNGCKPDVVTYSCL 295
Query: 589 IKYVSKSGTSDDAIAFLKGMTSKRFPSMSVV 619
I + K+ D+A LK M + P ++
Sbjct: 296 ITGLIKASQLDEACQVLKKMEKEGCPPDTIT 326
Score = 63.2 bits (152), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 84/370 (22%), Positives = 155/370 (41%), Gaps = 23/370 (6%)
Query: 264 TFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKV 323
TF+ + + + + K+G +KA+ E G D +Y+++ + LG++ + +K+
Sbjct: 149 TFTYNSLIYGLGKVG-RSQKAMELLEEMERHG-CPPDVMTYSSLITGLGKDGETVKAFKL 206
Query: 324 LDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVV 383
EM+ +G + + T ++ + V +A++L + KP V L+
Sbjct: 207 FQEMKRRGRKPDSITFTALMDALGKAGRVDDALELLDEMKERGVKPGVVTYNALIAGF-- 264
Query: 384 SKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASS 443
K D+ ++ + NG + ++ LI ++ E ++LK ME+ G +
Sbjct: 265 GKVGDLVEAYNLLDEMKRNGCKPDVVTYSCLITGLIKASQLDEACQVLKKMEKEGCPPDT 324
Query: 444 NMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQK 503
+ + L AG ++A D M++ G + + +LI A ++ A F++
Sbjct: 325 ITYNTLINGLGKAGLLNDAGRLFDRMKSKGCNPDVVTYSTLITALGKAARVESACVLFEE 384
Query: 504 MVEKEGTSHAGYAIDLLVNTYCS------KNRAIDACKFVHNCVREYDLKPWHTTYEELI 557
M G DL TYCS K +D + + +R L P TY +
Sbjct: 385 M------ESVGIQPDLF--TYCSIITVLGKAGQVDDADRLFSEMRGKGLSPDVITYNAFL 436
Query: 558 KNLLVQRGFKDALSLLCLMKDHGFPPFV---DPFIKYVSKSGTSDDAIAFLKGMTSK--R 612
+L FK+A + MK+ G P V D + +SK+ DDA LK + +
Sbjct: 437 NSLGRGGRFKEARKIFEDMKESGLLPDVATYDALLLGLSKTKEVDDACGLLKELIEQGCA 496
Query: 613 FPSMSVVLCL 622
F S+ CL
Sbjct: 497 FDSLKFDECL 506
Score = 53.9 bits (128), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 81/364 (22%), Positives = 150/364 (41%), Gaps = 43/364 (11%)
Query: 166 TYNLMLRIVGVHGLVQEFWGLVDVMKKKG------------YGV--ASHVRN--KMTEKF 209
TYN ++ G G + E + L+D MK+ G G+ AS + ++ +K
Sbjct: 256 TYNALIAGFGKVGDLVEAYNLLDEMKRNGCKPDVVTYSCLITGLIKASQLDEACQVLKKM 315
Query: 210 EKEGLESDL----EKLKGIFATGSIDNSIEKVASRICKVVRSDIWGDDVERQLRDLNVTF 265
EKEG D + G+ G +++ A R+ ++S DV VT+
Sbjct: 316 EKEGCPPDTITYNTLINGLGKAGLLND-----AGRLFDRMKSKGCNPDV--------VTY 362
Query: 266 SNDLVKFVVDKLGDEPK--KALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKV 323
S ++ LG + A + F E G ++ D +Y ++ +VLG+ +D ++
Sbjct: 363 ST-----LITALGKAARVESACVLFEEMESVG-IQPDLFTYCSIITVLGKAGQVDDADRL 416
Query: 324 LDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVV 383
EMR KG ++ T L KEA ++E P V LL +
Sbjct: 417 FSEMRGKGLSPDVITYNAFLNSLGRGGRFKEARKIFEDMKESGLLPDVATYDALLLGLSK 476
Query: 384 SKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASS 443
+K++D +++ E G + L+ L S G + E +++L+ G +
Sbjct: 477 TKEVDDA--CGLLKELIEQGCAFDSLKFDECLEILTSWGNVDEAHELLQFANSKGLWPGA 534
Query: 444 NMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQK 503
+ + + L+ AG+ EA ++ ++ G + SLI G +D A + ++
Sbjct: 535 SSYNALIDALAKAGRVSEAFNTLEDLKEQGGKPDIVSYSSLISALGQTGQIDTAFELLEE 594
Query: 504 MVEK 507
M ++
Sbjct: 595 MSKR 598
Score = 41.2 bits (95), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 86/414 (20%), Positives = 169/414 (40%), Gaps = 56/414 (13%)
Query: 70 INLIDPKNPNFRNPMICSYSSEPAMEQKESDFTVVSDIFYKFSDVNDISKQLELSGVVFT 129
+ L+D P + +Y++ A F V D+ ++ ++++ + VV
Sbjct: 239 LELLDEMKERGVKPGVVTYNALIA------GFGKVGDLVEAYNLLDEMKRNGCKPDVVTY 292
Query: 130 HEMVLKVLKNLESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLVDV 189
++ ++K S DEA + +EKE + TYN ++ +G GL+ + L D
Sbjct: 293 SCLITGLIK--ASQLDEACQVLK-KMEKEGCPPDTITYNTLINGLGKAGLLNDAGRLFDR 349
Query: 190 MKKKG--------------YGVASHVRNK--MTEKFEKEGLESDLEKLKGIFATGSIDNS 233
MK KG G A+ V + + E+ E G++ DL F SI
Sbjct: 350 MKSKGCNPDVVTYSTLITALGKAARVESACVLFEEMESVGIQPDL------FTYCSIITV 403
Query: 234 IEKVASRICKVVRSDIWGDDVERQLRDL-NVTFSNDLVKF--VVDKLGDEP--KKALIFF 288
+ K DD +R ++ S D++ + ++ LG K+A F
Sbjct: 404 LGKAGQV-----------DDADRLFSEMRGKGLSPDVITYNAFLNSLGRGGRFKEARKIF 452
Query: 289 RWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGY---EMEMETCVKVLGR 345
+ESG + D ++Y+A+ L + +D +L E+ +G ++ + C+++L
Sbjct: 453 EDMKESGLL-PDVATYDALLLGLSKTKEVDDACGLLKELIEQGCAFDSLKFDECLEILTS 511
Query: 346 FSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNV 405
+ V EA +L +FA + P + L+ + + ++ + +E G
Sbjct: 512 WGN---VDEAHELLQFANSKGLWPGASSYNALIDALAKAGRVSEAF--NTLEDLKEQGGK 566
Query: 406 LTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKK 459
+S++ AL G++ ++L+ M + G S S + +L G +
Sbjct: 567 PDIVSYSSLISALGQTGQIDTAFELLEEMSKRGLKLSPRSYSNLVRKLQDWGAR 620
Score = 41.2 bits (95), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 86/392 (21%), Positives = 157/392 (40%), Gaps = 73/392 (18%)
Query: 155 LEKESERLSSKTYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRNKMTEKFEKEGL 214
+++ + S T+ ++ +G G V + L+D MK++G N + F K G
Sbjct: 210 MKRRGRKPDSITFTALMDALGKAGRVDDALELLDEMKERGVKPGVVTYNALIAGFGKVG- 268
Query: 215 ESDLEKLKGIFATGSIDNSIEKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVV 274
DL + N ++++ CK DV VT+S + +
Sbjct: 269 --DLVEAY---------NLLDEMKRNGCK--------PDV--------VTYSCLITGLIK 301
Query: 275 DKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEM 334
DE + L + E+ G D +YN + + LG+ ++ ++ D M+SKG
Sbjct: 302 ASQLDEACQVL---KKMEKEG-CPPDTITYNTLINGLGKAGLLNDAGRLFDRMKSKGCNP 357
Query: 335 EMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDM--RLF 392
++ T ++ + V+ A L+E + +P + ++ + + Q+D RLF
Sbjct: 358 DVVTYSTLITALGKAARVESACVLFEEMESVGIQPDLFTYCSIITVLGKAGQVDDADRLF 417
Query: 393 SKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFI------------ 440
S++ R + +V+T N+ L +L GR E KI + M+E G +
Sbjct: 418 SEM-RGKGLSPDVIT---YNAFLNSLGRGGRFKEARKIFEDMKESGLLPDVATYDALLLG 473
Query: 441 ---------ASSNMKSKI----AFR----------LSSAGKKDEANEFMDHMEASGSDVG 477
A +K I AF L+S G DEA+E + + G G
Sbjct: 474 LSKTKEVDDACGLLKELIEQGCAFDSLKFDECLEILTSWGNVDEAHELLQFANSKGLWPG 533
Query: 478 DKMWVSLIKGHCVAGDLDKAADCFQKMVEKEG 509
+ +LI AG + +A + + + E+ G
Sbjct: 534 ASSYNALIDALAKAGRVSEAFNTLEDLKEQGG 565
>gi|255660942|gb|ACU25640.1| pentatricopeptide repeat-containing protein [Stachytarpheta
cayennensis]
Length = 484
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 77/364 (21%), Positives = 150/364 (41%), Gaps = 48/364 (13%)
Query: 258 LRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCI 317
+R+L + ++LV V+ + AL FFRW E S +H+ ++ + +LGR +
Sbjct: 3 IRNLVPSIDHELVYNVLHS-AKNSEHALQFFRWVERSNLFEHNRETHLKIIEILGRASKL 61
Query: 318 DRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFL 377
+ +L +M KG E + + V ++ + + +V+E+V
Sbjct: 62 NHARCILLDMPKKGLEWDEDLWVLMIDSYGKAGIVQESV--------------------- 100
Query: 378 LRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEG 437
++F K+ E G T +++ K ++ GR + M
Sbjct: 101 ------------KMFQKM----EELGVERTIKSYDALFKVILRRGRYMMAKRYFNKMLSE 144
Query: 438 GFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKA 497
G + + + + + +GK + AN F + M++ + +++ G+C +++A
Sbjct: 145 GIEPTRHTFNVMMWGFFLSGKVETANRFFEDMKSREIMPDVVTYNTMVNGYCRVKKMEEA 204
Query: 498 ADCFQKMVEKEGTSHAGYAI--DLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEE 555
F VE +G + + L+ Y S +R DA + V ++ + +KP TY
Sbjct: 205 EKYF---VEMKGRNIEPTVVTYTTLIKGYVSVDRVDDALRLVEE-MKGFGMKPNAITYST 260
Query: 556 LIKNLLVQRGFKDALSLLCLMKDHGFPPFVDP-FIKYVS---KSGTSDDAIAFLKGMTSK 611
L+ L +A S+L M + P + F++ +S K+G D A LK M
Sbjct: 261 LLPGLCNAEKMSEARSILKEMVEKYIAPTDNSIFMRLISGQCKAGDLDAAANVLKAMIRL 320
Query: 612 RFPS 615
P+
Sbjct: 321 SVPT 324
Score = 49.7 bits (117), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 74/311 (23%), Positives = 136/311 (43%), Gaps = 45/311 (14%)
Query: 312 GREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKN-KPS 370
G+ + +RF+ ++M+S+ ++ T ++ + ++EA + Y M +N +P+
Sbjct: 164 GKVETANRFF---EDMKSREIMPDVVTYNTMVNGYCRVKKMEEA-EKYFVEMKGRNIEPT 219
Query: 371 VNCCTFLLRKIVVSKQLD--MRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECN 428
V T L++ V ++D +RL ++ + F N +T +++L L + +M E
Sbjct: 220 VVTYTTLIKGYVSVDRVDDALRLVEEM-KGFGMKPNAIT---YSTLLPGLCNAEKMSEAR 275
Query: 429 KILKAMEEGGFIASSNMKSKIAFRLSS----AGKKDEANEFMDHMEASGSDVGDKMWVSL 484
ILK M E +IA ++ + I RL S AG D A + M + L
Sbjct: 276 SILKEMVEK-YIAPTD--NSIFMRLISGQCKAGDLDAAANVLKAMIRLSVPTEAGHYGVL 332
Query: 485 IKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREY 544
I+ +C AG+ DKA K++EK D+++ + + A +N + EY
Sbjct: 333 IENYCKAGEYDKAIKLLDKVIEK----------DIILRPQSTLHMESSA----YNPLIEY 378
Query: 545 DLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPFIKYVSKSGTSDDAIAF 604
T E + L++ G +D +L L++ H S+ G+ D A
Sbjct: 379 LCNNGQTAKAEALVRQLMKLGVQDPTALNTLIRGH-------------SQEGSPDSAFEL 425
Query: 605 LKGMTSKRFPS 615
LK M ++ S
Sbjct: 426 LKIMLRRKVDS 436
>gi|297795313|ref|XP_002865541.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297311376|gb|EFH41800.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 711
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 106/523 (20%), Positives = 210/523 (40%), Gaps = 49/523 (9%)
Query: 121 LELSGVVFTHEMVLKVLKNLESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLV 180
L+ + F++E++ +L + + + + + L + + L+ TYN ++ + +
Sbjct: 159 LQKHNLCFSYELLYSILIH---ALGRSEKLYEAFLLSQKQTLTPLTYNALIGACARNNDI 215
Query: 181 QEFWGLVDVMKKKGYGVASHVRNKMTEKFEKEGLESDLEKLKGIFATGSIDNSIEKVA-S 239
++ L+ M++ GY +SD + + + N I+ V
Sbjct: 216 EKALNLISRMRQDGY-------------------QSDFVNYSLVIQSLTRCNKIDSVMLQ 256
Query: 240 RICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKH 299
R+ K ++ER +L+V ND++ K GD P +AL A+ +G +
Sbjct: 257 RLYK---------EIERDKLELDVQLVNDIIMGFA-KSGD-PSRALQLLGMAQATG-LSA 304
Query: 300 DESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLY 359
++ ++ S L + +E+R G + + +L + + +K+A +
Sbjct: 305 KTATLVSIISALANSGRTLEAEALFEELRQSGIKPRTKAYNALLKGYVKTGPLKDAELMV 364
Query: 360 EFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALI 419
P + + L+ V + + + +++V E G+V ++ + S L L
Sbjct: 365 SEMEKRGVSPDEHTYSLLIDAYVNAGRWES---ARIVLKEMETGDVQPNSFVFSRL--LA 419
Query: 420 SVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGK---KDEANEFMDHMEASGSDV 476
GE K + ++E I + + + GK D A D M + G +
Sbjct: 420 GYRDRGEWQKTFQVLKEMKSIGVKPDRQFYNVVIDTFGKFNCLDHAMTTFDRMLSEGIEP 479
Query: 477 GDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKF 536
W +LI HC G A + F+ M E+ G ++++N+Y + R D +
Sbjct: 480 DRVTWNTLIDCHCKHGRHIVAEEMFEAM-ERRGCLPCATTYNIMINSYGDQERWDDMKRL 538
Query: 537 VHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPP---FVDPFIKYVS 593
+ ++ + P T+ L+ F DA+ L MK G P + I +
Sbjct: 539 LGK-MKSQGILPNVVTHTTLVDVYGKSGRFNDAIECLEEMKSVGLKPSSTMYNALINAYA 597
Query: 594 KSGTSDDAIAFLKGMTSKRF-PSMSVVLCLFAAFFQARRHSEA 635
+ G S+ A+ + MTS PS+ + L AF + RR +EA
Sbjct: 598 QRGLSEQAVNAFRVMTSDGLKPSLLALNSLINAFGEDRRDAEA 640
>gi|15219388|ref|NP_178067.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75200795|sp|Q9SAK0.1|PP132_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g79490, mitochondrial; AltName: Full=Protein EMBRYO
DEFECTIVE 2217; Flags: Precursor
gi|4835759|gb|AAD30226.1|AC007202_8 T8K14.9 [Arabidopsis thaliana]
gi|332198129|gb|AEE36250.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 836
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 85/414 (20%), Positives = 171/414 (41%), Gaps = 49/414 (11%)
Query: 239 SRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVD-KLGDEPKKALIFFRWAE-ESGF 296
++I +VV+ WG ++E QL L F ++V K+ E AL FRWA+ + +
Sbjct: 144 AKIVEVVQRWKWGPELETQLDKLQ--FVPNMVHITQSLKIVKEVDAALSLFRWAKKQPWY 201
Query: 297 VKHDE-------------------------------------SSYNAMASVLGREDCIDR 319
+ DE ++YN + L + + ++
Sbjct: 202 LPSDECYVVLFDGLNQGRDFVGIQSLFEEMVQDSSSHGDLSFNAYNQVIQYLAKAEKLEV 261
Query: 320 FWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLR 379
+ + + G +++ +T ++ F + + +A ++YE + + ++
Sbjct: 262 AFCCFKKAQESGCKIDTQTYNNLMMLFLNKGLPYKAFEIYESMEKTDSLLDGSTYELIIP 321
Query: 380 KIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGF 439
+ S +LD K+ + +E + ++ +S++ ++ GR+ K+ M+ G
Sbjct: 322 SLAKSGRLDAAF--KLFQQMKERKLRPSFSVFSSLVDSMGKAGRLDTSMKVYMEMQGFGH 379
Query: 440 IASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAAD 499
S+ M + + AGK D A D M+ SG ++ +I+ H +G L+ A
Sbjct: 380 RPSATMFVSLIDSYAKAGKLDTALRLWDEMKKSGFRPNFGLYTMIIESHAKSGKLEVAMT 439
Query: 500 CFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKN 559
F+ M EK G L+ + + +D+ ++N + L+P ++Y L+
Sbjct: 440 VFKDM-EKAGFLPTPSTYSCLLEMHAGSGQ-VDSAMKIYNSMTNAGLRPGLSSYISLLTL 497
Query: 560 LLVQRGFKDALSLLCLMKDHGFPPFV---DPFIKYVSKSGTSDDAIAFLKGMTS 610
L +R A +L MK G+ V D + Y+ K + D A+ +L+ M S
Sbjct: 498 LANKRLVDVAGKILLEMKAMGYSVDVCASDVLMIYI-KDASVDLALKWLRFMGS 550
>gi|225451354|ref|XP_002275019.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g12700, mitochondrial-like [Vitis vinifera]
Length = 744
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 86/401 (21%), Positives = 158/401 (39%), Gaps = 49/401 (12%)
Query: 300 DESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLY 359
D +++ + L E I + D+M +G++ + T ++ + A+ L
Sbjct: 125 DPTTFTTLIRGLCVEGKIGEALHLFDKMIDEGFQPNVVTYGTLINGLCKVGNTSAAIRLL 184
Query: 360 EFAMACKNKPSVNCCTFLLRKIVVSKQLD--MRLFSKVVRVFRENGNVLTDAMLN--SVL 415
+P V T ++ + +Q+ LFS++V G ++ + S++
Sbjct: 185 RSMEQGNCQPDVVIYTSIIDSLCKDRQVTEAFNLFSQMV------GQGISPDIFTYTSLV 238
Query: 416 KALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSD 475
AL ++ +L M + + S + L GK EA+E +D M G +
Sbjct: 239 HALCNLCEWKHVTTLLNQMVNSKILPDVVIFSTVVDALCKEGKVTEAHEIVDMMIQRGVE 298
Query: 476 VGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDL-----LVNTYCSKNRA 530
+ +L+ GHC+ ++D+A F MV K G+A D+ L+N YC K
Sbjct: 299 PDVVTYTTLMDGHCLQSEMDEAVKVFDMMVRK------GFAPDVISYTTLINGYC-KIHK 351
Query: 531 IDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPF-- 588
ID ++ + + P TY L+ L +DA++L M G P + +
Sbjct: 352 IDKAMYLFEEMCRKEWIPDTKTYNTLMHGLCHVGRLQDAIALFHEMVARGQMPDLVTYSI 411
Query: 589 -IKYVSKSGTSDDAIAFLKGMTSKRF-PSMSVVLCLFAAFFQARRHSEAQDLLSK----- 641
+ + K+ ++A+A LK + + P + V + +A A+DL S
Sbjct: 412 LLDSLCKNCHLEEAMALLKAIEASNLNPDIQVYNIIIDGMCRAGELEAARDLFSNLSSKG 471
Query: 642 ---------------CPRYVRNHADVLNLLYSKKSGGDSAP 667
C R + N A N L+ + G D +P
Sbjct: 472 LHPSVWTYNIMIHGLCKRGLLNEA---NKLFMEMDGNDCSP 509
Score = 48.1 bits (113), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 63/131 (48%), Gaps = 5/131 (3%)
Query: 515 YAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLC 574
Y +++L+N++C NR A + ++ +P TT+ LI+ L V+ +AL L
Sbjct: 92 YTLNILINSFCHLNRVGFAFSVLAKILK-LGHQPDPTTFTTLIRGLCVEGKIGEALHLFD 150
Query: 575 LMKDHGFPPFVDPF---IKYVSKSGTSDDAIAFLKGMTSKRF-PSMSVVLCLFAAFFQAR 630
M D GF P V + I + K G + AI L+ M P + + + + + R
Sbjct: 151 KMIDEGFQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPDVVIYTSIIDSLCKDR 210
Query: 631 RHSEAQDLLSK 641
+ +EA +L S+
Sbjct: 211 QVTEAFNLFSQ 221
>gi|414871822|tpg|DAA50379.1| TPA: hypothetical protein ZEAMMB73_401482 [Zea mays]
Length = 522
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 64/238 (26%), Positives = 108/238 (45%), Gaps = 14/238 (5%)
Query: 412 NSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEA 471
NSV+ AL GR+ E + AM E S M S A A + EA M+A
Sbjct: 203 NSVIVALARAGRVDEARSVFDAMPERTVATWSAMVSAYA----RAARCSEALALFSAMQA 258
Query: 472 SGSDVGDKMWVSLIKGHCVA-GDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRA 530
G + + VS++ G C + G L + A + +++ G + + LV+ YC K +
Sbjct: 259 DGMEPNANVLVSVL-GCCASLGALVQGA-WVHEYIDRHGVAMNALVVTALVDMYC-KCGS 315
Query: 531 IDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPFIK 590
+D + V + R L +++ +++ L V +++A++L +K +G P FI
Sbjct: 316 VDDARQVFDAARSQGLAKL-SSWNSMMQGLAVHGQWREAVALFSELKSYGLSPDNVTFIA 374
Query: 591 YVSK---SGTSDDAIAFLKGMTSKRF--PSMSVVLCLFAAFFQARRHSEAQDLLSKCP 643
++ SG D+A A M+S+ P + CL A +A R EA+D + P
Sbjct: 375 VLTAYGHSGMPDEAQAAFASMSSEHGVEPGIEHYGCLVDALARAGRLREAEDAIRAMP 432
>gi|302762673|ref|XP_002964758.1| hypothetical protein SELMODRAFT_82857 [Selaginella moellendorffii]
gi|300166991|gb|EFJ33596.1| hypothetical protein SELMODRAFT_82857 [Selaginella moellendorffii]
Length = 552
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 58/246 (23%), Positives = 100/246 (40%), Gaps = 5/246 (2%)
Query: 395 VVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLS 454
V+R R+ G + N+++ R+ E +L+ M E GF S + + L
Sbjct: 300 VLRQMRDAGCLPDAVTYNTLIDGFFKRQRLREAVGLLREMLEAGFHPSVVTYTTLCHGLC 359
Query: 455 SAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAG 514
+G+ DEA E +D+M A G + S++ G C AG + +A F+KM E +
Sbjct: 360 RSGRFDEAVEILDYMAARGCAPNAITYSSIVDGLCKAGRVTEALGYFEKMARDEVVAPHV 419
Query: 515 YAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLC 574
A L++ C + +A +F+ +R + P T+ LI L L L
Sbjct: 420 IAYSALIDGLCKAGKIDEAYEFLERMIRAGRI-PDVVTFSILINGLCDAGRIDTGLELFR 478
Query: 575 LMKDHGFPPFVDPFIKYVS---KSGTSDDAIAFLKGMTSKRF-PSMSVVLCLFAAFFQAR 630
M + G P + + V ++ D+A + M S P S + +
Sbjct: 479 GMAERGCVPDMVTYATLVDRLCRASRVDEAFDLFQQMRSDGLSPDRSTRRTMIHGLLEVN 538
Query: 631 RHSEAQ 636
R +A+
Sbjct: 539 RDEDAK 544
Score = 55.8 bits (133), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 77/337 (22%), Positives = 139/337 (41%), Gaps = 25/337 (7%)
Query: 317 IDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTF 376
+D+ + +M K ++ T ++ ++ VKEA DL+E A A P+V
Sbjct: 11 VDKAITLFKQMVDKAIYPDVVTYGALIDGLGKQRRVKEAYDLFEEARAKGCHPTVVTYNT 70
Query: 377 LLRKIVVSKQLD--MRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAM 434
++ + +++ + L+ + F V+T ++++ L + + K+L+ M
Sbjct: 71 MIDGLCKCGRIENALTLYDDMAIHFGFRPTVVT---YSTLIDGLCRDHEVDKGCKLLEEM 127
Query: 435 EEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDL 494
G ++ + + L G+ EA ++ M A+G + +IKG C G++
Sbjct: 128 AGRGCAPNAVTYNTLVNALLGQGRSKEAFSLLEQMAANGCPPELITFGLIIKGLCKEGEI 187
Query: 495 DKAADCFQKMVEKE-GTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVR---EYDLKPWH 550
+ A +M E G S + +++ C + R +DA HN + E +P
Sbjct: 188 EAAFRVVDEMFMIESGLSPDVITFNSVLDGLCKEQRILDA----HNVFKRALERGCRPNV 243
Query: 551 TTYEELIKNLLVQRGFKDALSLLCLMKDHG-------FPPFVDPFIKYVSKSGTSDDAIA 603
TY LI L +AL LL M + G + VD +K G +DA+
Sbjct: 244 VTYSTLIDGLSKMAKMDEALQLLAKMVELGCRANTVTYSTVVDGLLKV----GRMEDAVV 299
Query: 604 FLKGM-TSKRFPSMSVVLCLFAAFFQARRHSEAQDLL 639
L+ M + P L FF+ +R EA LL
Sbjct: 300 VLRQMRDAGCLPDAVTYNTLIDGFFKRQRLREAVGLL 336
>gi|297848938|ref|XP_002892350.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297338192|gb|EFH68609.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 493
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 77/303 (25%), Positives = 118/303 (38%), Gaps = 7/303 (2%)
Query: 287 FFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRF 346
FR E G + HD S++ + R + L +M G+E + T ++ F
Sbjct: 95 LFRHIEILG-ISHDLYSFSTLIDCFCRCSRLSLALSCLGKMMKLGFEPSIVTFGSLVNGF 153
Query: 347 SERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVL 406
N ++EA+ L + + +P+V ++ + ++Q+D L V+ + G
Sbjct: 154 CHVNRIQEAMSLVDQIVGLGYEPNVVIYNTIIDSLCENRQVDTAL--DVLNHMEKMGIRP 211
Query: 407 TDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFM 466
NS++ L G+ G +IL M G S + G+ EA +
Sbjct: 212 DVITYNSLITRLFHSGKWGVSARILSDMMRMGIHPDVITFSAMIDVFGKEGQLLEAKKQY 271
Query: 467 DHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCS 526
D M D + SLI G C+ G LD+A MV K G + LVN YC
Sbjct: 272 DEMIQRSVDPNIVTYNSLINGLCIHGLLDEAKKVLNFMVSK-GFFPNAVTYNTLVNGYCK 330
Query: 527 KNRAIDACKFVHNCVREYDLKPWHT-TYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFV 585
R DA K + CV +D T TY L + F A +L M G P +
Sbjct: 331 SKRVDDAMKIL--CVMSHDGVDGDTFTYNTLYQGYCQAGQFNAAEKVLARMVSCGVLPDI 388
Query: 586 DPF 588
F
Sbjct: 389 YTF 391
Score = 49.7 bits (117), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 64/305 (20%), Positives = 116/305 (38%), Gaps = 45/305 (14%)
Query: 317 IDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTF 376
I ++D++ GYE + ++ E V A+D+ +P V
Sbjct: 159 IQEAMSLVDQIVGLGYEPNVVIYNTIIDSLCENRQVDTALDVLNHMEKMGIRPDVITYNS 218
Query: 377 LLRKI-----------VVSKQLDMRL------FSKVVRVFRENGNVLT-----DAML--- 411
L+ ++ ++S + M + FS ++ VF + G +L D M+
Sbjct: 219 LITRLFHSGKWGVSARILSDMMRMGIHPDVITFSAMIDVFGKEGQLLEAKKQYDEMIQRS 278
Query: 412 --------NSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEAN 463
NS++ L G + E K+L M GF ++ + + + + D+A
Sbjct: 279 VDPNIVTYNSLINGLCIHGLLDEAKKVLNFMVSKGFFPNAVTYNTLVNGYCKSKRVDDAM 338
Query: 464 EFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNT 523
+ + M G D + +L +G+C AG + A +MV G Y ++L++
Sbjct: 339 KILCVMSHDGVDGDTFTYNTLYQGYCQAGQFNAAEKVLARMVSC-GVLPDIYTFNMLLDG 397
Query: 524 YCSKNRAIDACKFVHNCVREYDLKPWHT-----TYEELIKNLLVQRGFKDALSLLCLMKD 578
C + A V+ DL+ T TY +IK + +DA L C +
Sbjct: 398 LCEHGKIEKA------LVKLEDLQKSETVVGIITYNIIIKGMCKANKVEDAWYLFCSLAL 451
Query: 579 HGFPP 583
G P
Sbjct: 452 KGVSP 456
>gi|297806669|ref|XP_002871218.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297317055|gb|EFH47477.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 1029
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 88/404 (21%), Positives = 157/404 (38%), Gaps = 15/404 (3%)
Query: 241 ICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHD 300
IC V+ S + + L L V F+ +LV V+ + L FF W + KH+
Sbjct: 616 ICHVLSSSRDWERTQEALEKLTVQFTPELVVEVLRNAKIQGNAVLRFFSWVGKRNGYKHN 675
Query: 301 ESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYE 360
+YN V G + + EMR +G + +T ++ ++ + A+ ++
Sbjct: 676 SEAYNMSIKVAGCGKDFKQMRSLFYEMRRQGCLITQDTWAIMIMQYGRTGLTNIAIRTFK 735
Query: 361 FAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALIS 420
PS + L+ + K ++ +K R +G V ++ L L
Sbjct: 736 EMKDMGLIPSSSTFKCLITVLCEKKGRNVEEATKTFREMIRSGFVPDRELVQDYLGCLCE 795
Query: 421 VGRMGECNKILKAMEEGGFIASSNMKSKIAFR-LSSAGKKDEANEFMDHMEASGSDVGDK 479
VG + L ++ + GF + I R LS GK +EA + E S +
Sbjct: 796 VGNTKDAKSCLDSLGKIGFPVP--VAYSIYIRALSRIGKLEEALSELASFEGDRSLLDQY 853
Query: 480 MWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKN--RAIDACKFV 537
+ S++ G GDL KA D M E L+V+ + K + ++ C
Sbjct: 854 TYGSIVHGLLQRGDLHKALDKVNSMKEIGIKPGVHVYTSLIVHFFKEKQFEKVLETC--- 910
Query: 538 HNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPFIKYVS---K 594
H ++E +P TY +I + ++A +++ G P + K+++ +
Sbjct: 911 HK-MKEESCEPSVVTYTAMICGYMSLGKVEEAWKAFRNIEEKGTSPDFKTYSKFINCLCQ 969
Query: 595 SGTSDDAIAFLKGMTSKRFPSMSVVLCLFAAFFQARRHSEAQDL 638
+G S+DA+ L M K ++ F F QDL
Sbjct: 970 AGKSEDALKLLSEMLDKGIAPSTIN---FRTVFYGLNREGKQDL 1010
Score = 62.0 bits (149), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 85/362 (23%), Positives = 141/362 (38%), Gaps = 48/362 (13%)
Query: 237 VASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGF 296
V +I VVR+D +E +L L+ F ++V+ V+ + P A+ FF W +
Sbjct: 124 VVHQITSVVRADDEIVSMEDRLEILSFRFEPEIVENVLKRCFKVPHLAMRFFNWVKLKDG 183
Query: 297 VKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAV 356
H YN M S+ G +D ++DE+ EME C K
Sbjct: 184 FSHRVGIYNTMLSIAGEARNLD----MVDELVK---EMEKHACDK--------------- 221
Query: 357 DLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLK 416
+ T L+ +K++ L V R++G L A N +++
Sbjct: 222 -------------DIRTWTILISVYGKAKKIGKGLL--VFEKMRKSGFELDAAAYNIMIR 266
Query: 417 ALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHM----EAS 472
+L GR + K M E G + ++ + K D D M E S
Sbjct: 267 SLCIAGRGDLALEFYKEMMEKGITFGLRTYKMLLDCIAKSEKVDVVQSIADDMVRICEIS 326
Query: 473 GSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAID 532
D + L+K CV+G + +A + +++ KE A Y ++LV C NR +D
Sbjct: 327 EHDA----FGYLLKSFCVSGKIKEALELIRELKNKEMCLDAKY-FEILVKGLCRANRMVD 381
Query: 533 ACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPFIKYV 592
A + V + ++ L Y +I L Q AL ++K G PP V + + +
Sbjct: 382 ALEIV-DIMKRRKLDD-SNVYGIIISGYLRQNDVSKALEQFEIIKKSGRPPRVSTYTEIM 439
Query: 593 SK 594
+
Sbjct: 440 QQ 441
Score = 47.0 bits (110), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 85/423 (20%), Positives = 161/423 (38%), Gaps = 54/423 (12%)
Query: 80 FRNPMICSYSSEPAMEQK--ESDFTVVSDIFYKFSDVNDISKQLELSGVVFTHEMVLKVL 137
+ P + S+ P + D + + D + LE V FT E+V++VL
Sbjct: 590 YNRPQVVQQSALPPASSAVDKMDVQEICHVLSSSRDWERTQEALEKLTVQFTPELVVEVL 649
Query: 138 KNLESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGV 197
+N + + RFF+WV ++ + +S+ YN+ +++ G ++ L M+++G +
Sbjct: 650 RNAKIQGNAVLRFFSWVGKRNGYKHNSEAYNMSIKVAGCGKDFKQMRSLFYEMRRQGCLI 709
Query: 198 ASHVRNKMTEKFEKEGLES-DLEKLKGIFATGSIDNS-----------------IEKVAS 239
M ++ + GL + + K + G I +S +E+
Sbjct: 710 TQDTWAIMIMQYGRTGLTNIAIRTFKEMKDMGLIPSSSTFKCLITVLCEKKGRNVEEATK 769
Query: 240 RICKVVRSDIWGDD--VERQLRDLNVTFSNDLVKFVVDKLGD----EPKKALIFFRWAEE 293
+++RS D V+ L L + K +D LG P I+ R
Sbjct: 770 TFREMIRSGFVPDRELVQDYLGCLCEVGNTKDAKSCLDSLGKIGFPVPVAYSIYIRALSR 829
Query: 294 SGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVK 353
G + E + + +AS G +D++ T ++ +R +
Sbjct: 830 IGKL---EEALSELASFEGDRSLLDQY-----------------TYGSIVHGLLQRGDLH 869
Query: 354 EAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRV---FRENGNVLTDAM 410
+A+D KP V+ T L+ KQ F KV+ +E +
Sbjct: 870 KALDKVNSMKEIGIKPGVHVYTSLIVHFFKEKQ-----FEKVLETCHKMKEESCEPSVVT 924
Query: 411 LNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHME 470
+++ +S+G++ E K + +EE G SK L AGK ++A + + M
Sbjct: 925 YTAMICGYMSLGKVEEAWKAFRNIEEKGTSPDFKTYSKFINCLCQAGKSEDALKLLSEML 984
Query: 471 ASG 473
G
Sbjct: 985 DKG 987
Score = 46.2 bits (108), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 98/475 (20%), Positives = 176/475 (37%), Gaps = 84/475 (17%)
Query: 113 DVNDISKQLELSGVVFTHEMVLKVLKNLESSPDEARRFFNWVLEKESERLSSKTYNLMLR 172
++ + +LE+ F E+V VLK P A RFFNWV K+ YN ML
Sbjct: 137 EIVSMEDRLEILSFRFEPEIVENVLKRCFKVPHLAMRFFNWVKLKDGFSHRVGIYNTMLS 196
Query: 173 IVGVHGLVQEFWGLVDVMKKKG--------------YGVASHVRNKMT--EKFEKEGLES 216
I G + LV M+K YG A + + EK K G E
Sbjct: 197 IAGEARNLDMVDELVKEMEKHACDKDIRTWTILISVYGKAKKIGKGLLVFEKMRKSGFEL 256
Query: 217 DLEKLKGIFATGSIDNSIEKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDK 276
D + + +C R D+ + +++ + +TF K ++D
Sbjct: 257 DAAAYNIMIRS-------------LCIAGRGDL-ALEFYKEMMEKGITFGLRTYKMLLDC 302
Query: 277 LGDEPKKALI------FFRWAEESGFVKHDESSY---------------NAMASVLGRED 315
+ K ++ R E S +HD Y + + +E
Sbjct: 303 IAKSEKVDVVQSIADDMVRICEIS---EHDAFGYLLKSFCVSGKIKEALELIRELKNKEM 359
Query: 316 CID-RFWKVLDEMRSKGYEM----EMETCVK------------VLGRFSERNMVKEAVDL 358
C+D +++++L + + M E+ +K ++ + +N V +A++
Sbjct: 360 CLDAKYFEILVKGLCRANRMVDALEIVDIMKRRKLDDSNVYGIIISGYLRQNDVSKALEQ 419
Query: 359 YEFAMACKNKPSVNCCTFLLRKIVVSKQLD--MRLFSKVVRVFRENGNVLTDAMLNSVLK 416
+E P V+ T +++++ KQ + LFS+++ E+G + +V+
Sbjct: 420 FEIIKKSGRPPRVSTYTEIMQQLFKLKQFEKGCNLFSEMI----ESGIEPDSVAITAVVA 475
Query: 417 ALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDV 476
+ R+ E K+ +MEE G + S L + + DE + M AS +
Sbjct: 476 GHLGQNRVAEAWKVFGSMEEKGIKPTWKSYSIFMKELCRSSRYDEIITLFNQMHASKIAI 535
Query: 477 GDKMWVSLIKGHCVAGDLDK-------AADCFQKMVEKEGTSHAGYAIDLLVNTY 524
D ++ +I G+ +K C E G+ A + LVN Y
Sbjct: 536 RDDIFSWVISSMEKNGEKEKIDLIKEIQKQCNAYNQELNGSGKAEFMQKELVNKY 590
>gi|222634970|gb|EEE65102.1| hypothetical protein OsJ_20158 [Oryza sativa Japonica Group]
Length = 552
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 107/512 (20%), Positives = 213/512 (41%), Gaps = 45/512 (8%)
Query: 166 TYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRNKMTEKFEKEGLESDLEKLKGIF 225
TYN+++R + G ++E G+V M+ G + N + F + G E++ +
Sbjct: 12 TYNILVRALCARGRLEEAVGVVGDMRGAGCAPNAVTYNTLVAAFCRAGELDGAERVVSLM 71
Query: 226 -ATGSIDNSI---EKVASRICKVVRSD----IWGDDVERQLRDLNVTFSNDLVKFVVDKL 277
G+ ++ + + +CK R + ++ + V L V+++ L + K+
Sbjct: 72 REEGNAKPNLVTFNSMVNGLCKAGRMEGARKVFDEMVREGLAPDVVSYNTLLSGYC--KV 129
Query: 278 GDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEME 337
G ++L F + G V D ++ ++ + +++ ++ +MR +G M
Sbjct: 130 GC-LHESLAVFSEMTQRGLVP-DVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEV 187
Query: 338 TCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDM-RLFSKVV 396
T ++ F ++ + +A+ E C +PSV C L+ ++D+ R + +
Sbjct: 188 TFTALIDGFCKKGFLDDALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMDLARELIREM 247
Query: 397 RVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSA 456
R +V+T ++++ VG + ++ + M + G + + S + L
Sbjct: 248 EAKRVKPDVVT---YSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLIRGLCEE 304
Query: 457 GKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYA 516
+ ++A E ++M G + + +LI GHC G+++KA +M+ K G
Sbjct: 305 KRLNDACELFENMLQLGVQPDEFTYTTLIDGHCKEGNVEKALSLHDEMIRK-GVLPDVVT 363
Query: 517 IDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRG-FKDALSLL-- 573
+L+N R +A + + E D P + Y+ L+ L + FK ++LL
Sbjct: 364 YSVLINGLSKSARTKEAHRLLFKLYHE-DPVPDNIKYDALM--LCCSKAEFKSVVALLKG 420
Query: 574 -C---LMK--DHGFPPFVDP-----------FIKYVSKSGTSDDAIAFLKGMTSKRF-PS 615
C LMK D + +D I + G A++F K M F P+
Sbjct: 421 FCMKGLMKEADKVYQSMLDRNWKLDGSVYSILIHGHCRGGNVRKALSFHKQMLRSGFSPN 480
Query: 616 MSVVLCLFAAFFQARRHSEA----QDLLSKCP 643
+ + L F+ EA QDLL+ CP
Sbjct: 481 STSTISLVRGLFEEGMVVEADNAIQDLLTCCP 512
>gi|224123314|ref|XP_002319048.1| predicted protein [Populus trichocarpa]
gi|222857424|gb|EEE94971.1| predicted protein [Populus trichocarpa]
Length = 497
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 78/325 (24%), Positives = 137/325 (42%), Gaps = 12/325 (3%)
Query: 322 KVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKI 381
K+ DEM GYE ++ T ++ + A+ L + KP+V + ++ +
Sbjct: 68 KLFDEMVKMGYEPDVITYSTIINGLCKMGSTTMAIQLLKKMEEKGCKPNVVVYSTIIDSL 127
Query: 382 VVSKQLD--MRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGF 439
K + M S++V + NV+T +S+L ++GR E + K M E
Sbjct: 128 CKDKLITEAMEFLSEMVNR-GISPNVVT---YSSILHGFCNLGRSNEATSLFKQMVERNV 183
Query: 440 IASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAAD 499
+ + + + LS G EA + M G + + +L+ G+C +D+A
Sbjct: 184 MPDTVTFNILVDGLSKEGMILEAQCVFETMIEKGVEPNVNTYNALMDGYCSQSQMDEAQK 243
Query: 500 CFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKN 559
F MV K G + + + ++L+ +C R ID K + + L P TY L+K
Sbjct: 244 LFNIMVRK-GCAPSVRSYNILIKGHCKSGR-IDEAKGLLAEMSHKALTPDTVTYSTLMKG 301
Query: 560 LLVQRGFKDALSLLCLMKDHGFPPFVDPF---IKYVSKSGTSDDAIAFLKGMT-SKRFPS 615
+DA LL M+ +G P + + + + K G D+A LK M SK P+
Sbjct: 302 FCQDGRPQDAQKLLEEMRSYGLLPDLMTYSIVLDGLCKQGHLDEAFELLKAMQESKIEPN 361
Query: 616 MSVVLCLFAAFFQARRHSEAQDLLS 640
+ + L + A++L S
Sbjct: 362 IFIYTILIQGMCNFGKLEAARELFS 386
Score = 62.4 bits (150), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 70/261 (26%), Positives = 111/261 (42%), Gaps = 10/261 (3%)
Query: 389 MRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSK 448
++LF ++V++ E +V+T ++++ L +G ++LK MEE G + + S
Sbjct: 67 VKLFDEMVKMGYEP-DVIT---YSTIINGLCKMGSTTMAIQLLKKMEEKGCKPNVVVYST 122
Query: 449 IAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKE 508
I L EA EF+ M G + S++ G C G ++A F++MVE+
Sbjct: 123 IIDSLCKDKLITEAMEFLSEMVNRGISPNVVTYSSILHGFCNLGRSNEATSLFKQMVERN 182
Query: 509 GTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKD 568
++LV+ SK I + V + E ++P TY L+ Q +
Sbjct: 183 VMPDT-VTFNILVDGL-SKEGMILEAQCVFETMIEKGVEPNVNTYNALMDGYCSQSQMDE 240
Query: 569 ALSLLCLMKDHGFPPFVDPF---IKYVSKSGTSDDAIAFLKGMTSKRF-PSMSVVLCLFA 624
A L +M G P V + IK KSG D+A L M+ K P L
Sbjct: 241 AQKLFNIMVRKGCAPSVRSYNILIKGHCKSGRIDEAKGLLAEMSHKALTPDTVTYSTLMK 300
Query: 625 AFFQARRHSEAQDLLSKCPRY 645
F Q R +AQ LL + Y
Sbjct: 301 GFCQDGRPQDAQKLLEEMRSY 321
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 84/366 (22%), Positives = 147/366 (40%), Gaps = 22/366 (6%)
Query: 254 VERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGR 313
V R + VT+S+ L F LG + +F + E + V D ++N + L +
Sbjct: 144 VNRGISPNVVTYSSILHGFC--NLGRSNEATSLFKQMVERN--VMPDTVTFNILVDGLSK 199
Query: 314 EDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNC 373
E I V + M KG E + T ++ + ++ + EA L+ + PSV
Sbjct: 200 EGMILEAQCVFETMIEKGVEPNVNTYNALMDGYCSQSQMDEAQKLFNIMVRKGCAPSVRS 259
Query: 374 CTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVL-KALISVGRMGECNKILK 432
L++ S ++D +K + + + D + S L K GR + K+L+
Sbjct: 260 YNILIKGHCKSGRIDE---AKGLLAEMSHKALTPDTVTYSTLMKGFCQDGRPQDAQKLLE 316
Query: 433 AMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAG 492
M G + S + L G DEA E + M+ S + ++ LI+G C G
Sbjct: 317 EMRSYGLLPDLMTYSIVLDGLCKQGHLDEAFELLKAMQESKIEPNIFIYTILIQGMCNFG 376
Query: 493 DLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKF-----VHNCVREYDLK 547
L+ A + F + K G ++++ + +AC+ VH C+
Sbjct: 377 KLEAARELFSNLFVK-GIQPDVVTYTVMISGLLKGGLSNEACELFRDMAVHGCL------ 429
Query: 548 PWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPFIKYVSKSGTSDDAIA-FLK 606
P TY +I+ L +A L+ M GF F + +S + D+ I+ F+
Sbjct: 430 PNSCTYNVIIQGFLRNGDTSNAGRLIEEMVGRGFSADSSTF-QMLSDLESRDEIISLFMH 488
Query: 607 GMTSKR 612
G + R
Sbjct: 489 GSSQGR 494
Score = 40.0 bits (92), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 61/134 (45%), Gaps = 9/134 (6%)
Query: 515 YAIDLLVNTYCSKNRAIDACKFVHNCVR---EYDLKPWHTTYEELIKNLLVQRGFKDALS 571
Y + +L+N +C N D F + + + L+P H T+ L+ L + DA+
Sbjct: 11 YTLTILINCFCHSNH--DHFHFAFSVLGNMFKLGLQPNHVTFSTLLNGLSSKAKIIDAVK 68
Query: 572 LLCLMKDHGFPPFVDPF---IKYVSKSGTSDDAIAFLKGMTSKRF-PSMSVVLCLFAAFF 627
L M G+ P V + I + K G++ AI LK M K P++ V + +
Sbjct: 69 LFDEMVKMGYEPDVITYSTIINGLCKMGSTTMAIQLLKKMEEKGCKPNVVVYSTIIDSLC 128
Query: 628 QARRHSEAQDLLSK 641
+ + +EA + LS+
Sbjct: 129 KDKLITEAMEFLSE 142
>gi|359488007|ref|XP_002263892.2| PREDICTED: pentatricopeptide repeat-containing protein
At1g62910-like [Vitis vinifera]
Length = 539
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 76/335 (22%), Positives = 142/335 (42%), Gaps = 13/335 (3%)
Query: 317 IDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTF 376
+D VL ++ G++ + T ++ + EA+D+++ + +P+V
Sbjct: 107 VDFALSVLAKILKLGHQPDTATFTTLVRGLCVVGKIGEALDVFDKMVGEGFQPNVVTYGT 166
Query: 377 LLRKIVVSKQLD--MRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAM 434
L+ + +QL + LFS+++ G NS++ AL ++ +L M
Sbjct: 167 LMNGLCKDRQLTEALNLFSEMI----AKGISPDIFTYNSLIHALCNLCEWKHVTTLLNEM 222
Query: 435 EEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDL 494
+ + + + + L GK EA++ +D M G + + +L+ GHC+ ++
Sbjct: 223 VKSKIMPNVVSLNIVVDALCKEGKVTEAHDVVDMMIQGGVEPDVVTYAALMDGHCLRSEM 282
Query: 495 DKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYE 554
D+A F MV + G + + L+N YC R ID ++ + +L P TY
Sbjct: 283 DEAVKVFDMMV-RNGCVCNVVSYNTLINGYCKIQR-IDKAMYLFEEMCRQELIPNTMTYS 340
Query: 555 ELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPF---IKYVSKSGTSDDAIAFLKGMTSK 611
LI L +DA++L M G P + + + Y+ K+ +A+A LK +
Sbjct: 341 TLIHGLCHVGRLQDAIALFNEMVACGQIPNLVTYSILLDYLCKNHRLAEAMALLKAIEGS 400
Query: 612 RF-PSMSVVLCLFAAFFQARRHSEAQDLLSK-CPR 644
P + V +A A+DL S PR
Sbjct: 401 NLDPDVQVYNIAIDGMCRAGDLEAARDLFSNLAPR 435
Score = 48.5 bits (114), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 67/305 (21%), Positives = 121/305 (39%), Gaps = 23/305 (7%)
Query: 303 SYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFA 362
S N + L +E + V+D M G E ++ T ++ R+ + EAV +++
Sbjct: 233 SLNIVVDALCKEGKVTEAHDVVDMMIQGGVEPDVVTYAALMDGHCLRSEMDEAVKVFD-- 290
Query: 363 MACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRE--NGNVLTDAMLNSVL-KALI 419
M +N N ++ +++ ++ K + +F E ++ + M S L L
Sbjct: 291 MMVRNGCVCNVVSY---NTLINGYCKIQRIDKAMYLFEEMCRQELIPNTMTYSTLIHGLC 347
Query: 420 SVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDK 479
VGR+ + + M G I + S + L + EA + +E S D +
Sbjct: 348 HVGRLQDAIALFNEMVACGQIPNLVTYSILLDYLCKNHRLAEAMALLKAIEGSNLDPDVQ 407
Query: 480 MWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFV-- 537
++ I G C AGDL+ A D F + + G + ++++ C + +A K
Sbjct: 408 VYNIAIDGMCRAGDLEAARDLFSNLAPR-GLQPDVWTHNIMIRGLCKRGLLDEASKLFRE 466
Query: 538 ---HNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDP---FIKY 591
+ C+R TY + + LL A+ LL M GF V +K
Sbjct: 467 MDENGCLRN------GCTYNTITQGLLQNNKTSRAIQLLEEMLARGFSADVSTTALLVKM 520
Query: 592 VSKSG 596
+S G
Sbjct: 521 LSDDG 525
>gi|414887654|tpg|DAA63668.1| TPA: hypothetical protein ZEAMMB73_339081 [Zea mays]
Length = 1098
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 99/464 (21%), Positives = 178/464 (38%), Gaps = 61/464 (13%)
Query: 163 SSKTYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRNKMTEKFEKEG-LESDLEKL 221
++ TYN +L+ G + + L +M KKG + + + F K G E L
Sbjct: 453 TTLTYNALLKGFCSLGSIDDALRLWFLMLKKGIAPNEISCSTLLDGFFKSGKTEKALNLW 512
Query: 222 KGIFATGSIDNS--IEKVASRICKVVR-----------------SDIWG----------- 251
K A G N+ V + +CK+ R DI
Sbjct: 513 KETLARGLAKNTTTFNTVINGLCKIERMPEAEELVDKMKQWRCPPDIITYRTLFSGYCKI 572
Query: 252 DDVERQLRDLN----------VTFSNDLVK--FVVDKLGDEPKKALIFFRWAEESGFVKH 299
D++R R LN + F N L+ F+ + G K I F + +
Sbjct: 573 GDMDRASRILNELENLGFAPTIEFFNSLITGHFIAKQHG---KVNDILFEMSNRG--LSP 627
Query: 300 DESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLY 359
+ +Y A+ + +E + + + EM KG + C ++ F + EA +
Sbjct: 628 NTVAYGALIAGWCKEGDLHTAYNLYLEMIEKGLVPNLFICSSLVSCFYRKGKFDEANLVL 687
Query: 360 EFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALI 419
+ + P ++ + +L++ + + + M N V+ L
Sbjct: 688 QNLVGTDMIPDIS-----------APRLEIGKVANFIDTVAGGNHHSAKIMWNIVIFGLC 736
Query: 420 SVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDK 479
+GR+ + +L +++ GF+A + S + S++G D A + D M + G
Sbjct: 737 KLGRIEDAKNLLADLKDKGFVADNFTYSSLIHGCSASGFVDVAFDLRDTMLSVGLTPNIV 796
Query: 480 MWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHN 539
+ SLI G C +G+L +A F+K+ K G S + L++ +C +A K
Sbjct: 797 TYNSLIYGLCKSGELSRAVSLFKKLWTK-GISPNAITYNTLIDKHCKDGYITEAFKLKQR 855
Query: 540 CVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPP 583
+ E + P TY LI L Q ++A+ LL M ++ P
Sbjct: 856 MIEE-GIHPTVFTYSILINGLCTQGYMEEAIKLLDQMIENNVDP 898
Score = 59.3 bits (142), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 91/420 (21%), Positives = 158/420 (37%), Gaps = 65/420 (15%)
Query: 277 LGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEM 336
L P +F E +S++ + L +D +V DEMR+ G + M
Sbjct: 149 LSARPPAPPLFPHLVEVYKEFSFSAASFDLLLRALANAGQLDGALQVFDEMRTLGCRLSM 208
Query: 337 ETCVKVLGRFSERNMVKEAVDLYE-----------FAMA------CKNKPSVNCCTFLLR 379
+C +L R ++ + V ++E F +A CK K V+ F+
Sbjct: 209 RSCNSILNRLAQTGDLGATVAVFEQMQRAGALPDKFTVAIMAKAYCKVKGVVHALEFVEE 268
Query: 380 KIVVSKQLDMRLFSKVVRVFRENGNVLTDA--MLNSVLKALISVGRM-------GECNKI 430
+ ++++ + V+ + E G DA ML+S+ S + G CN+
Sbjct: 269 MTKMGVEVNLVAYHAVMNGYCEVGQT-NDARRMLDSLPGRGFSPNIVTYTLLVKGYCNE- 326
Query: 431 LKAMEEGGFIASSNMKSK-----------IAFRLSSAGKKDEANEFMDHMEASGSDVGDK 479
K MEE + K+K + G+ ++A ++ M S V
Sbjct: 327 -KNMEEAEGVVQEIRKNKQLVVDEAVFGAVINGYCQMGRMEDAARLLNEMVDSRLQVNLF 385
Query: 480 MWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSK---NRAIDACKF 536
++ +I G+C G + +A + +M G Y+ + LV+ YC K N+A +
Sbjct: 386 VYNIMINGYCKLGRMVEAHNILHEMT-GVGVRPDTYSYNSLVDGYCKKGLMNKAFE---- 440
Query: 537 VHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPP-------FVDPFI 589
+N + TY L+K DAL L LM G P +D F
Sbjct: 441 TYNTMLRNGFAATTLTYNALLKGFCSLGSIDDALRLWFLMLKKGIAPNEISCSTLLDGFF 500
Query: 590 KYVSKSGTSDDAIAFLKGMTSKRFPSMSVVL-CLFAAFFQARRHSEAQDLLSK-----CP 643
KSG ++ A+ K ++ + + + R EA++L+ K CP
Sbjct: 501 ----KSGKTEKALNLWKETLARGLAKNTTTFNTVINGLCKIERMPEAEELVDKMKQWRCP 556
>gi|302818914|ref|XP_002991129.1| hypothetical protein SELMODRAFT_236212 [Selaginella moellendorffii]
gi|300141060|gb|EFJ07775.1| hypothetical protein SELMODRAFT_236212 [Selaginella moellendorffii]
Length = 614
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 101/434 (23%), Positives = 172/434 (39%), Gaps = 49/434 (11%)
Query: 257 QLRDLNVTFSNDLVKFVVDKLGDEPKK--ALIFFRWAEESGFVKHDESSYNAMASVLGRE 314
++R N+ + L ++D L + AL FR + SG V D Y A+ S L +E
Sbjct: 34 EMRSKNLVPNVFLCSILIDGLCKAKRSIDALRCFRAMQGSGIVA-DTVIYTALLSGLWKE 92
Query: 315 DCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCC 374
+D+ +L EMR G E + T ++ + N A +L+E + + PS+
Sbjct: 93 KRLDQALAILHEMRDHGCEPNVVTYNSLIDGLCKNNEPDRAQELFEHMKSVECSPSMVTY 152
Query: 375 TFLLRKIVVSKQLD--MRLFSKVVRVF------RENGNVLTDAML-------NSVLKALI 419
LL + + +L+ M LF +++ R + NV+T ++L N V +A+
Sbjct: 153 NTLLDGLFRTGKLERAMALFQEMLDRRSHDMDDRCSPNVITYSVLIDGLCKANRVSQAVE 212
Query: 420 SVGRM-----------------GECN--------KILKAMEEGGFIASSNMKSKIAFRLS 454
+ M G C ++L+ M + G + + + + L
Sbjct: 213 LLESMKARGCSPDVITYTILVDGLCKESKVAAAWEVLREMLDAGCVPNLVTYNSLLHGLC 272
Query: 455 SAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAG 514
A + +A M M G + +LI G C G + A M++K GT
Sbjct: 273 RARRVSDALALMRDMTCRGCTPNVVTYGTLIDGLCKVGRVKDACAMLADMIDKGGTPDL- 331
Query: 515 YAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLC 574
++L+N C ++ ++ + V +KP TY +I L +A LL
Sbjct: 332 MIYNMLINGLCKADQVDESIALLRRAV-SGGIKPDVVTYSSVIYGLCRSNRLDEACRLLL 390
Query: 575 LMKDHGFPPFV---DPFIKYVSKSGTSDDAIAFLKGMTSKRFPSMSVVL-CLFAAFFQAR 630
+K G PP V I + K+G D+A + M + V L +A
Sbjct: 391 YVKSRGCPPDVILYSTLIDGLCKAGKVDEAFDLYEVMAGDGCDADVVTYSTLIDGLCKAG 450
Query: 631 RHSEAQDLLSKCPR 644
R EA LL++ R
Sbjct: 451 RVDEAHLLLARMVR 464
Score = 55.8 bits (133), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 80/346 (23%), Positives = 142/346 (41%), Gaps = 26/346 (7%)
Query: 266 SNDLVKF--VVDKLGDEPKKALIF--FRWAEESGFVKHDESSYNAMASVLGREDCIDRFW 321
S D++ + +VD L E K A + R ++G V + +YN++ L R +
Sbjct: 223 SPDVITYTILVDGLCKESKVAAAWEVLREMLDAGCVPN-LVTYNSLLHGLCRARRVSDAL 281
Query: 322 KVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKI 381
++ +M +G + T ++ + VK+A + + P + L+ +
Sbjct: 282 ALMRDMTCRGCTPNVVTYGTLIDGLCKVGRVKDACAMLADMIDKGGTPDLMIYNMLINGL 341
Query: 382 VVSKQLD--MRLFSKVVRVFRENGNVLTDAML-NSVLKALISVGRMGECNKILKAMEEGG 438
+ Q+D + L + V +G + D + +SV+ L R+ E ++L ++ G
Sbjct: 342 CKADQVDESIALLRRAV-----SGGIKPDVVTYSSVIYGLCRSNRLDEACRLLLYVKSRG 396
Query: 439 FIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAA 498
+ S + L AGK DEA + + M G D + +LI G C AG +D+A
Sbjct: 397 CPPDVILYSTLIDGLCKAGKVDEAFDLYEVMAGDGCDADVVTYSTLIDGLCKAGRVDEAH 456
Query: 499 DCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIK 558
+MV + GT + + L+ C N +A + V R + P TY LI
Sbjct: 457 LLLARMV-RMGTPPSTMTYNSLIKGLCDLNHLDEAIELVEEMERS-NCAPSAVTYNILIH 514
Query: 559 NLLVQRGFKDALSLLCLMKDHGFPPFVDPFIKYVSKSGTSDDAIAF 604
+ A+ LL K + V+ GT+ D IA+
Sbjct: 515 GMCRMERVDSAVVLLEQAK-----------ARCVAAGGTALDTIAY 549
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/168 (25%), Positives = 72/168 (42%), Gaps = 12/168 (7%)
Query: 481 WVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNC 540
+ +L++G C G++D+A CF +M K + + +L++ C R+IDA + C
Sbjct: 12 YAALLRGFCRGGEIDQAQRCFDEMRSKNLVPNV-FLCSILIDGLCKAKRSIDALR----C 66
Query: 541 VREYD---LKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFV---DPFIKYVSK 594
R + Y L+ L ++ AL++L M+DHG P V + I + K
Sbjct: 67 FRAMQGSGIVADTVIYTALLSGLWKEKRLDQALAILHEMRDHGCEPNVVTYNSLIDGLCK 126
Query: 595 SGTSDDAIAFLKGMTSKRF-PSMSVVLCLFAAFFQARRHSEAQDLLSK 641
+ D A + M S PSM L F+ + A L +
Sbjct: 127 NNEPDRAQELFEHMKSVECSPSMVTYNTLLDGLFRTGKLERAMALFQE 174
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 52/236 (22%), Positives = 108/236 (45%), Gaps = 12/236 (5%)
Query: 278 GDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEME 337
D+ +++ R A SG +K D +Y+++ L R + +D ++L ++S+G ++
Sbjct: 344 ADQVDESIALLRRAV-SGGIKPDVVTYSSVIYGLCRSNRLDEACRLLLYVKSRGCPPDVI 402
Query: 338 TCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMR--LFSKV 395
++ + V EA DLYE V + L+ + + ++D L +++
Sbjct: 403 LYSTLIDGLCKAGKVDEAFDLYEVMAGDGCDADVVTYSTLIDGLCKAGRVDEAHLLLARM 462
Query: 396 VRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSS 455
VR+ G + NS++K L + + E ++++ ME S+ + + +
Sbjct: 463 VRM----GTPPSTMTYNSLIKGLCDLNHLDEAIELVEEMERSNCAPSAVTYNILIHGMCR 518
Query: 456 AGKKDEANEFMDH-----MEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVE 506
+ D A ++ + A G+ + + SLI G C AG + +A D FQ+M++
Sbjct: 519 MERVDSAVVLLEQAKARCVAAGGTALDTIAYSSLIDGLCKAGRVAEALDYFQEMID 574
Score = 45.4 bits (106), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 68/327 (20%), Positives = 127/327 (38%), Gaps = 51/327 (15%)
Query: 296 FVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEA 355
+ D +Y A+ R ID+ + DEMRSK N+V
Sbjct: 4 ICQPDVYTYAALLRGFCRGGEIDQAQRCFDEMRSK-------------------NLV--- 41
Query: 356 VDLYEFAMACKNKPSVNCCTFLLRKIVVSKQ-LD-MRLFSKVVRVFRENGNVLTDAMLNS 413
P+V C+ L+ + +K+ +D +R F R + +G V + +
Sbjct: 42 -------------PNVFLCSILIDGLCKAKRSIDALRCF----RAMQGSGIVADTVIYTA 84
Query: 414 VLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASG 473
+L L R+ + IL M + G + + + L + D A E +HM++
Sbjct: 85 LLSGLWKEKRLDQALAILHEMRDHGCEPNVVTYNSLIDGLCKNNEPDRAQELFEHMKSVE 144
Query: 474 SDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEG------TSHAGYAIDLLVNTYCSK 527
+ +L+ G G L++A FQ+M+++ S +L++ C
Sbjct: 145 CSPSMVTYNTLLDGLFRTGKLERAMALFQEMLDRRSHDMDDRCSPNVITYSVLIDGLCKA 204
Query: 528 NRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFV-- 585
NR A + + + ++ P TY L+ L + A +L M D G P +
Sbjct: 205 NRVSQAVELLES-MKARGCSPDVITYTILVDGLCKESKVAAAWEVLREMLDAGCVPNLVT 263
Query: 586 -DPFIKYVSKSGTSDDAIAFLKGMTSK 611
+ + + ++ DA+A ++ MT +
Sbjct: 264 YNSLLHGLCRARRVSDALALMRDMTCR 290
>gi|15231863|ref|NP_190938.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75174107|sp|Q9LFF1.1|PP281_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At3g53700, chloroplastic; AltName: Full=Protein MATERNAL
EFFECT EMBRYO ARREST 40; Flags: Precursor
gi|6729521|emb|CAB67677.1| putative protein [Arabidopsis thaliana]
gi|15982931|gb|AAL09812.1| AT3g53700/F4P12_400 [Arabidopsis thaliana]
gi|332645608|gb|AEE79129.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 754
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 76/316 (24%), Positives = 132/316 (41%), Gaps = 15/316 (4%)
Query: 300 DESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLY 359
D +YN++ S L + + +VLD+M ++ T ++ + N V+EA +L
Sbjct: 329 DVYTYNSVISGLCKLGEVKEAVEVLDQMITRDCSPNTVTYNTLISTLCKENQVEEATELA 388
Query: 360 EFAMACKNKPSVNCCTF--LLRKIVVSK--QLDMRLFSKVVRVFRENGNVLTDAMLNSVL 415
+ P V CTF L++ + +++ ++ M LF ++ R G + N ++
Sbjct: 389 RVLTSKGILPDV--CTFNSLIQGLCLTRNHRVAMELFEEM----RSKGCEPDEFTYNMLI 442
Query: 416 KALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSD 475
+L S G++ E +LK ME G S + + A K EA E D ME G
Sbjct: 443 DSLCSKGKLDEALNMLKQMELSGCARSVITYNTLIDGFCKANKTREAEEIFDEMEVHGVS 502
Query: 476 VGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACK 535
+ +LI G C + ++ AA +M+ EG Y + L+ +C A
Sbjct: 503 RNSVTYNTLIDGLCKSRRVEDAAQLMDQMI-MEGQKPDKYTYNSLLTHFCRGGDIKKAAD 561
Query: 536 FVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGF---PPFVDPFIKYV 592
V + +P TY LI L + A LL ++ G P +P I+ +
Sbjct: 562 IVQ-AMTSNGCEPDIVTYGTLISGLCKAGRVEVASKLLRSIQMKGINLTPHAYNPVIQGL 620
Query: 593 SKSGTSDDAIAFLKGM 608
+ + +AI + M
Sbjct: 621 FRKRKTTEAINLFREM 636
Score = 60.5 bits (145), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 90/447 (20%), Positives = 170/447 (38%), Gaps = 82/447 (18%)
Query: 273 VVDKLGDEP--KKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSK 330
++D L +P AL F A + + + Y + LGR D K+L++M+S
Sbjct: 53 LLDSLRSQPDDSAALRLFNLASKKPNFSPEPALYEEILLRLGRSGSFDDMKKILEDMKSS 112
Query: 331 GYEMEMET---CVKVLGRFSERNMVKEAVD--LYEFAMACKN------------------ 367
EM T ++ +F ++ + VD + EF +
Sbjct: 113 RCEMGTSTFLILIESYAQFELQDEILSVVDWMIDEFGLKPDTHFYNRMLNLLVDGNSLKL 172
Query: 368 -------------KPSVNCCTFLLRKIVVSKQL-----------------DMRLFSKVVR 397
KP V+ L++ + + QL D + F+ V++
Sbjct: 173 VEISHAKMSVWGIKPDVSTFNVLIKALCRAHQLRPAILMLEDMPSYGLVPDEKTFTTVMQ 232
Query: 398 VFRENGNV----------------LTDAMLNSVLKALISVGRMGECNKILKAME-EGGFI 440
+ E G++ ++ +N ++ GR+ + ++ M + GF
Sbjct: 233 GYIEEGDLDGALRIREQMVEFGCSWSNVSVNVIVHGFCKEGRVEDALNFIQEMSNQDGFF 292
Query: 441 ASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADC 500
+ + L AG A E MD M G D + S+I G C G++ +A +
Sbjct: 293 PDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEV 352
Query: 501 FQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNL 560
+M+ ++ + + + L++T C +N+ +A + + + P T+ LI+ L
Sbjct: 353 LDQMITRDCSPNT-VTYNTLISTLCKENQVEEATELAR-VLTSKGILPDVCTFNSLIQGL 410
Query: 561 LVQRGFKDALSLLCLMKDHGFPPFVDPF-----IKYVSKSGTSDDAIAFLKGMT-SKRFP 614
+ R + A+ L M+ G P D F I + G D+A+ LK M S
Sbjct: 411 CLTRNHRVAMELFEEMRSKGCEP--DEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCAR 468
Query: 615 SMSVVLCLFAAFFQARRHSEAQDLLSK 641
S+ L F +A + EA+++ +
Sbjct: 469 SVITYNTLIDGFCKANKTREAEEIFDE 495
Score = 46.6 bits (109), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 87/458 (18%), Positives = 173/458 (37%), Gaps = 86/458 (18%)
Query: 166 TYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRNKMTEKFEKEGLESDLEKLKGIF 225
T+N ++ + G V+ ++DVM ++GY + N + + G+
Sbjct: 297 TFNTLVNGLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSV---------------ISGLC 341
Query: 226 ATGSIDNSIEKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKAL 285
G + ++E + + R VT+ N L+ + + ++ ++A
Sbjct: 342 KLGEVKEAVE-------------VLDQMITRDCSPNTVTY-NTLISTLCKE--NQVEEAT 385
Query: 286 IFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKV----LDEMRSKGYEMEMETCVK 341
R G + D ++N++ L C+ R +V +EMRSKG E + T
Sbjct: 386 ELARVLTSKGILP-DVCTFNSLIQGL----CLTRNHRVAMELFEEMRSKGCEPDEFTYNM 440
Query: 342 VLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRE 401
++ + + EA+++ KQ+++ ++ V +
Sbjct: 441 LIDSLCSKGKLDEALNML-------------------------KQMELSGCARSVITY-- 473
Query: 402 NGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDE 461
N+++ + E +I ME G +S + + L + + ++
Sbjct: 474 ----------NTLIDGFCKANKTREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVED 523
Query: 462 ANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLV 521
A + MD M G + SL+ C GD+ KAAD Q M G L+
Sbjct: 524 AAQLMDQMIMEGQKPDKYTYNSLLTHFCRGGDIKKAADIVQAMTSN-GCEPDIVTYGTLI 582
Query: 522 NTYCSKNRAIDACKFVHNC-VREYDLKPWHTTYEELIKNLLVQRGFKDALSLLC-LMKDH 579
+ C R A K + + ++ +L P Y +I+ L +R +A++L +++ +
Sbjct: 583 SGLCKAGRVEVASKLLRSIQMKGINLTPH--AYNPVIQGLFRKRKTTEAINLFREMLEQN 640
Query: 580 GFPP----FVDPFIKYVSKSGTSDDAIAFLKGMTSKRF 613
PP + F + G +A+ FL + K F
Sbjct: 641 EAPPDAVSYRIVFRGLCNGGGPIREAVDFLVELLEKGF 678
>gi|297839813|ref|XP_002887788.1| EMB2217 [Arabidopsis lyrata subsp. lyrata]
gi|297333629|gb|EFH64047.1| EMB2217 [Arabidopsis lyrata subsp. lyrata]
Length = 832
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 85/414 (20%), Positives = 170/414 (41%), Gaps = 49/414 (11%)
Query: 239 SRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVD-KLGDEPKKALIFFRWAE-ESGF 296
++I +VV+ WG ++E QL L F ++V K+ E AL FRWA+ + +
Sbjct: 140 AKIVEVVQRWKWGPELETQLDKLQ--FVPNMVHITQSLKIVKEVDAALSLFRWAKKQPWY 197
Query: 297 VKHDE-------------------------------------SSYNAMASVLGREDCIDR 319
+ DE +YN + L + + ++
Sbjct: 198 LPSDECYVVLFDGLNQGRDFVGIQSLFEEMVQDSSSHGDLSFGAYNQVIQYLAKAEKLEV 257
Query: 320 FWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLR 379
+ + + G +++ +T ++ F + + +A ++YE + + ++
Sbjct: 258 AFCCFKKAQESGCKIDTQTYNNLMMLFLNKGLPYKAFEIYESMEKTDSLLDGSTYELIIP 317
Query: 380 KIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGF 439
+ S +LD K+ + +E + ++ +S++ ++ GR+ K+ M+ G
Sbjct: 318 SLAKSGRLDAAF--KLFQQMKERKLRPSFSVFSSLVDSMGKAGRLDTSMKVYMEMQGFGH 375
Query: 440 IASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAAD 499
S+ M + + AGK D A D M+ SG ++ +I+ H +G L+ A
Sbjct: 376 RPSATMFVSLIDSYAKAGKLDTALRLWDEMKKSGFRPNFGLYTMIIESHAKSGKLEVAMS 435
Query: 500 CFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKN 559
F+ M EK G L+ + + +D+ ++N + L+P ++Y L+
Sbjct: 436 VFKDM-EKAGFLPTPSTYSCLLEMHAGSGQ-VDSAMKIYNSMTNAGLRPGLSSYISLLTL 493
Query: 560 LLVQRGFKDALSLLCLMKDHGFPPFV---DPFIKYVSKSGTSDDAIAFLKGMTS 610
L +R A +L MK G+ V D + Y+ K + D A+ +L+ M S
Sbjct: 494 LANKRLVDVAGKILLEMKAMGYSVDVCASDVLMIYI-KDASVDLALKWLRFMGS 546
>gi|356518209|ref|XP_003527773.1| PREDICTED: pentatricopeptide repeat-containing protein At4g31850,
chloroplastic-like [Glycine max]
Length = 1113
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 114/505 (22%), Positives = 199/505 (39%), Gaps = 88/505 (17%)
Query: 142 SSPDEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHV 201
S P+ A +F V + + + +T N ML + VHG V++ + D+M+K+ V
Sbjct: 100 SDPNSALSYFKMVSQLPNIVHTPETCNYMLEFLRVHGRVEDMAFVFDLMQKQ-------V 152
Query: 202 RNKMTEKFEKEGLESDLEKLKGIFATGSIDNSIEKVASRICKVVRSDIWGDDVERQLRDL 261
N+ + IF SI I + + K+ ++ L
Sbjct: 153 INRNPNTYLT------------IFKALSIKGGIRQAPFALGKMRQAGFV----------L 190
Query: 262 NVTFSNDLVKFVVDKLGDEP---KKALIFFRWAEESGFVKHDESSYNAMASVLGREDCID 318
N N L+ F++ +P K+AL ++ G +K +Y+A+ LGR
Sbjct: 191 NAYSYNGLIYFLL-----QPGFCKEALKVYKRMISEG-LKPSMKTYSALMVALGRRRDTG 244
Query: 319 RFWKVLDEMRSKGYEMEMET---CVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCT 375
+L+EM + G + T C++VLGR + +A + + P V T
Sbjct: 245 TIMDLLEEMETLGLRPNIYTYTICIRVLGRAGR---IDDAYGILKTMEDEGCGPDVVTYT 301
Query: 376 FLLRKIVVSKQLDM--RLFSK---------------VVRVFRENGNVLT----------- 407
L+ + + +LD L++K ++ F G++ T
Sbjct: 302 VLIDALCAAGKLDKAKELYTKMRASSHKPDLVTYITLMSKFGNYGDLETVKRFWSEMEAD 361
Query: 408 ----DAMLNSVL-KALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEA 462
D + ++L +AL G++ + +L M G + + + + + L + + DEA
Sbjct: 362 GYAPDVVTYTILVEALCKSGKVDQAFDMLDVMRVRGIVPNLHTYNTLISGLLNLRRLDEA 421
Query: 463 NEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVN 522
E ++ME+ G +V I + GD +KA D F+KM +K G + A + +
Sbjct: 422 LELFNNMESLGVAPTAYSYVLFIDYYGKLGDPEKALDTFEKM-KKRGIMPSIAACNASLY 480
Query: 523 TYCSKNR---AIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDH 579
+ R A D +HNC L P TY ++K A LL M
Sbjct: 481 SLAEMGRIREAKDIFNDIHNC----GLSPDSVTYNMMMKCYSKAGQIDKATKLLTEMLSE 536
Query: 580 GFPP---FVDPFIKYVSKSGTSDDA 601
G P V+ I + K+G D+A
Sbjct: 537 GCEPDIIVVNSLIDTLYKAGRVDEA 561
Score = 55.5 bits (132), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 63/292 (21%), Positives = 121/292 (41%), Gaps = 16/292 (5%)
Query: 298 KHDESSYNAMASVLGRE---DCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKE 354
K D +Y + S G + + RFW EM + GY ++ T ++ + V +
Sbjct: 329 KPDLVTYITLMSKFGNYGDLETVKRFW---SEMEADGYAPDVVTYTILVEALCKSGKVDQ 385
Query: 355 AVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSV 414
A D+ + P+++ L +S L++R + + +F ++ S
Sbjct: 386 AFDMLDVMRVRGIVPNLHTYNTL-----ISGLLNLRRLDEALELFNNMESLGVAPTAYSY 440
Query: 415 LKALISVGRMGECNKIL---KAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEA 471
+ + G++G+ K L + M++ G + S + + L+ G+ EA + + +
Sbjct: 441 VLFIDYYGKLGDPEKALDTFEKMKKRGIMPSIAACNASLYSLAEMGRIREAKDIFNDIHN 500
Query: 472 SGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAI 531
G + ++K + AG +DKA +M+ EG ++ L++T R
Sbjct: 501 CGLSPDSVTYNMMMKCYSKAGQIDKATKLLTEMLS-EGCEPDIIVVNSLIDTLYKAGRVD 559
Query: 532 DACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPP 583
+A + +++ L P TY LI L + AL L MK+ G PP
Sbjct: 560 EAWQMFGR-LKDLKLAPTVVTYNILITGLGKEGKLLKALDLFGSMKESGCPP 610
Score = 44.3 bits (103), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 66/303 (21%), Positives = 117/303 (38%), Gaps = 44/303 (14%)
Query: 303 SYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFA 362
SYN + L + + K+ EM++ G + T +L + + E +LY
Sbjct: 790 SYNCLMDGLLGCNITEAALKLFVEMKNAGCCPNIFTYNLLLDAHGKSKRIDELFELYN-E 848
Query: 363 MACKN-KPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISV 421
M C+ KP++ + I++S + +K + ++ E +IS
Sbjct: 849 MLCRGCKPNI-----ITHNIIISALVKSNSINKALDLYYE----------------IIS- 886
Query: 422 GRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMW 481
G F + + L AG+ +EA + + M ++
Sbjct: 887 ---------------GDFSPTPCTYGPLIGGLLKAGRSEEAMKIFEEMPDYQCKPNCAIY 931
Query: 482 VSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCV 541
LI G AG+++ A D F++M+ KEG + +LV R DA + +
Sbjct: 932 NILINGFGKAGNVNIACDLFKRMI-KEGIRPDLKSYTILVECLFMTGRVDDAVHYFEE-L 989
Query: 542 REYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFV---DPFIKYVSKSGTS 598
+ L P +Y +I L R ++ALSL MK+ G P + + I + +G
Sbjct: 990 KLTGLDPDTVSYNLMINGLGKSRRLEEALSLFSEMKNRGISPELYTYNALILHFGNAGMV 1049
Query: 599 DDA 601
D A
Sbjct: 1050 DQA 1052
Score = 39.3 bits (90), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 35/175 (20%), Positives = 79/175 (45%), Gaps = 6/175 (3%)
Query: 342 VLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLD--MRLFSKVVRVF 399
++ F + V A DL++ + +P + T L+ + ++ ++D + F ++
Sbjct: 934 LINGFGKAGNVNIACDLFKRMIKEGIRPDLKSYTILVECLFMTGRVDDAVHYFEELKLTG 993
Query: 400 RENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKK 459
+ V + M+N + K+ R+ E + M+ G + + +AG
Sbjct: 994 LDPDTVSYNLMINGLGKSR----RLEEALSLFSEMKNRGISPELYTYNALILHFGNAGMV 1049
Query: 460 DEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAG 514
D+A + + ++ G + + +LI+GH +G+ D+A F+KM+ + +AG
Sbjct: 1050 DQAGKMFEELQFMGLEPNVFTYNALIRGHSKSGNKDRAFSVFKKMMIVGCSPNAG 1104
>gi|255541126|ref|XP_002511627.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223548807|gb|EEF50296.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 1163
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 86/389 (22%), Positives = 154/389 (39%), Gaps = 71/389 (18%)
Query: 272 FVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCI-------------- 317
F V +L P KAL FF WA E GF H++ SY M +LGR +
Sbjct: 90 FEVLRLIKTPSKALQFFNWAPELGFT-HNDQSYFLMLEILGRARNLNVARNFLFSIKRRS 148
Query: 318 -------DRFW-----------------KVLDEMRSKGYEMEMET---CVKVLGRFSERN 350
DRF+ +V + M+S G + T + +L + N
Sbjct: 149 NGTVKLEDRFFNSLIRSYGKAGLFQESVQVFNSMKSVGVSPSVVTFNSLLLILLKRGRTN 208
Query: 351 MVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLD--MRLFSKVVRVFRENGNVLTD 408
M + D E P L+R + +D R F ++ R F+ + +++T
Sbjct: 209 MAQSVFD--EMLSTYGVTPDTYTFNILIRGFCKNSMVDEGFRFFKEMSR-FKCDPDLVT- 264
Query: 409 AMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSA------GKKDEA 462
N+++ L G++ + ++ M + S+N+ + + + DEA
Sbjct: 265 --YNTLVDGLCRAGKVNIAHNVVNGMVK----KSTNLNPDVVTYTTLVRGYCMKHEIDEA 318
Query: 463 NEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVN 522
+ M + G + + +LIKG C +DK F+ + G ++ L+N
Sbjct: 319 LVVFEEMVSKGLKPNEITYNTLIKGLCEVQKIDKIKQIFEGALGGGGFIPDTCTLNTLMN 378
Query: 523 TYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLL-------CL 575
+C+ DA + V + +++P TY LI+NL + F+ A L L
Sbjct: 379 AHCNAGNLNDALE-VFEKMMVLNVRPDSATYSVLIRNLCQRGNFERAEQLFDELSEKEIL 437
Query: 576 MKDHGFPPFVDPF---IKYVSKSGTSDDA 601
++D G P V + +++ ++G + A
Sbjct: 438 LRDDGCTPLVAAYKSMFEFLCRNGKTAKA 466
Score = 49.3 bits (116), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 102/460 (22%), Positives = 180/460 (39%), Gaps = 70/460 (15%)
Query: 133 VLKVLKNLESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLVDVMKK 192
V +VL+ L +P +A +FFNW E + ++Y LML I+G + + +K+
Sbjct: 89 VFEVLR-LIKTPSKALQFFNWAPELGFTH-NDQSYFLMLEILGRARNLNVARNFLFSIKR 146
Query: 193 KGYGVAS---HVRNKMTEKFEKEGLESDLEKLKGIFATGSIDNSIEKVASRICKVVRSDI 249
+ G N + + K GL + + + NS++ V V +
Sbjct: 147 RSNGTVKLEDRFFNSLIRSYGKAGLFQE---------SVQVFNSMKSVG------VSPSV 191
Query: 250 WGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMAS 309
VTF++ L+ ++ K G +F G V D ++N +
Sbjct: 192 -------------VTFNSLLL--ILLKRGRTNMAQSVFDEMLSTYG-VTPDTYTFNILIR 235
Query: 310 VLGREDCID---RFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACK 366
+ +D RF+K + + + T V L R + N+ V+ M K
Sbjct: 236 GFCKNSMVDEGFRFFKEMSRFKCDPDLVTYNTLVDGLCRAGKVNIAHNVVN----GMVKK 291
Query: 367 N---KPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRE---NGNVLTDAMLNSVLKALIS 420
+ P V T L+R + ++D L VF E G + N+++K L
Sbjct: 292 STNLNPDVVTYTTLVRGYCMKHEIDEALV-----VFEEMVSKGLKPNEITYNTLIKGLCE 346
Query: 421 VGRMGECNKILK-AMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDK 479
V ++ + +I + A+ GGFI + + + +AG ++A E + M
Sbjct: 347 VQKIDKIKQIFEGALGGGGFIPDTCTLNTLMNAHCNAGNLNDALEVFEKMMVLNVRPDSA 406
Query: 480 MWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHN 539
+ LI+ C G+ ++A F ++ EKE LL + C+ A F
Sbjct: 407 TYSVLIRNLCQRGNFERAEQLFDELSEKE---------ILLRDDGCTPLVAAYKSMF--- 454
Query: 540 CVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDH 579
E+ + T E + L++RG +D LS L+K H
Sbjct: 455 ---EFLCRNGKTAKAERVFRQLMKRGTQDPLSFKILIKGH 491
>gi|242066162|ref|XP_002454370.1| hypothetical protein SORBIDRAFT_04g029550 [Sorghum bicolor]
gi|241934201|gb|EES07346.1| hypothetical protein SORBIDRAFT_04g029550 [Sorghum bicolor]
Length = 952
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 88/458 (19%), Positives = 179/458 (39%), Gaps = 60/458 (13%)
Query: 223 GIFATGSIDNSIEKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPK 282
G+ +DN I + RI V+RS+ G VE++L+ L ++ +LV V+ + +
Sbjct: 171 GMAVDSDVDN-ISAMVHRITAVLRSEAPGPSVEQKLKSLGANYTPNLVNMVLKRCFKFRQ 229
Query: 283 KALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKV 342
FF WA+ H +YN M ++G +++ EM + +++T +
Sbjct: 230 LGFWFFHWAKRLPDFHHTTETYNTMLYIVGEARSFGIMEELVGEMDREMCPKDIKTWTIL 289
Query: 343 LGRFSERNMVKEAVDLYE-------------------FAMACKNKPSVNCCTFLLRKIVV 383
L ++ + + + + +E A+ +KP L +
Sbjct: 290 LSKYGKARQIGKMLSTFEAMRKSESIWIDSKVYRTVFHALCNADKPE------LALEFYK 343
Query: 384 SKQLDMRLFSKVVRVF----------RENGNVLTDAMLNSV-----------LKALISVG 422
+M + + ++R+ E ++ D M++ + L++ G
Sbjct: 344 DMPSNMEVGTDILRLLMCCLATSDNTTEGVYLIRDDMIDGMKHPEEYCYTEALRSFCIAG 403
Query: 423 RMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWV 482
++GE K+ + M+ SS +++ + L AG+ DEA + ++M+ S + +
Sbjct: 404 KLGEAWKVFQKMKNKSMANSSALENLLR-GLCRAGRMDEALQVTEYMKRISS-LNSTTFS 461
Query: 483 SLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVR 542
LI G+ G+ KA D ++M E A ++ + + AID C+
Sbjct: 462 FLINGYLRKGEHTKALDLLREMTEYGCVPLASSYTQVMQHLF-----AIDQCEEACGLFE 516
Query: 543 EY---DLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDP---FIKYVSKSG 596
E ++P T+ LI + A + + +G P + F++ + K
Sbjct: 517 EMLKNSVEPDIVTFTALICGHVRSGHISKAWDVFRNINKNGQKPTLKAYTVFMRELCKVS 576
Query: 597 TSDDAIAFLKGMTSKRFPSMSVVLCLFAAFFQARRHSE 634
+A+A LK M F C + + + + E
Sbjct: 577 RHLEAVALLKEMLEYDFRPSETTFCWLISTLRDKSYLE 614
>gi|168002263|ref|XP_001753833.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162694809|gb|EDQ81155.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 779
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 80/360 (22%), Positives = 147/360 (40%), Gaps = 11/360 (3%)
Query: 282 KKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVK 341
+KAL F++ + + K +E Y M ++GRE +D+ ++ ++M E + +
Sbjct: 55 QKALRLFKYMQRHQWCKPNEHVYTIMIGIMGREGMLDKASELFEDMPLNDVEWNVYSFTA 114
Query: 342 VLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTF-LLRKIVVSKQLDMRLFSKVVRVFR 400
++ + RN EA L+ A + K + N T+ + L+ + R
Sbjct: 115 LINAYG-RNGQHEA-SLHLLARMKREKVTPNLITYNTVINACAKGGLEWEGLLGLFAQMR 172
Query: 401 ENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKD 460
G N++L A S G + E + + M E G + S + + A + +
Sbjct: 173 HEGIQPDIITYNTLLSACSSRGLVEEAGMVFRTMNEAGVVPDSITYNALVDIYGQADRHE 232
Query: 461 EANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLL 520
E + ME +G+ + LI+ + AG AA F++M E G + L
Sbjct: 233 GVGELLREMEQAGNAPDVVAYNILIEAYGRAGKYRAAAKMFKQMQEA-GCTPDVVTFSTL 291
Query: 521 VNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRG-FKDALSLLCLMKDH 579
+ Y K+ D + + ++E +P TY LI+ + Q G F+++++L + D
Sbjct: 292 LEAY-GKHGCYDEVRLLFTDMKERGTEPDVNTYNTLIQ-VFGQGGFFQESINLFWDLLDG 349
Query: 580 GFPPFVDPFIKYV---SKSGTSDDAIAFLKGM-TSKRFPSMSVVLCLFAAFFQARRHSEA 635
G P + + + K G A + M S P+ L A+ A +SEA
Sbjct: 350 GVEPDMSTYAGLLYSCGKGGLHKAAKKIHRHMLQSYVTPTTDGFTGLITAYGNAALYSEA 409
Score = 45.4 bits (106), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 67/284 (23%), Positives = 115/284 (40%), Gaps = 23/284 (8%)
Query: 263 VTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGR----EDCID 318
VTFS L + DE + + F +E G + D ++YN + V G+ ++ I+
Sbjct: 286 VTFSTLLEAYGKHGCYDEVR---LLFTDMKERG-TEPDVNTYNTLIQVFGQGGFFQESIN 341
Query: 319 RFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLL 378
FW +LD G E +M T +L + + K A ++ + P+ + T L
Sbjct: 342 LFWDLLD----GGVEPDMSTYAGLLYSCGKGGLHKAAKKIHRHMLQSYVTPTTDGFTGL- 396
Query: 379 RKIVVSKQLDMRLFSKVVRVF---RENGNVLTDAMLNSVLKALISVGRMGECNKILKAME 435
++ + L+S+ F +E+G N+++ A G E M
Sbjct: 397 ----ITAYGNAALYSEATYAFNSMKESGCKPDLETYNALIGAHAGGGLYCEAGSAYLTMI 452
Query: 436 EGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLD 495
+ G A + + + G D+A EF ME + + +L+ +C AG D
Sbjct: 453 DEGISADVSTYNSLIEAFGRGGLFDDAIEFSRDMEEARCSPNRHTYEALMGVYCTAGLFD 512
Query: 496 KAADCFQKM-VEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVH 538
+A F + V E S Y LL++ +NR DA K +
Sbjct: 513 EAKAQFLDLQVGGELPSVDSYC--LLLSVCARRNRWDDASKVLE 554
>gi|115472657|ref|NP_001059927.1| Os07g0548300 [Oryza sativa Japonica Group]
gi|28564790|dbj|BAC57720.1| putative crp1 protein [Oryza sativa Japonica Group]
gi|113611463|dbj|BAF21841.1| Os07g0548300 [Oryza sativa Japonica Group]
Length = 661
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 88/386 (22%), Positives = 148/386 (38%), Gaps = 50/386 (12%)
Query: 297 VKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAV 356
++ D ++ + S R D ++L ++ G ++ V EA
Sbjct: 217 LEPDAPLFSDLISAFARARLPDAALELLASAQAIGLTPRSNAVTALISSLGSARRVAEAE 276
Query: 357 DLY-EFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVL 415
L+ EF +A + KP LL+ V K ++ +V+ + G +A + ++
Sbjct: 277 ALFLEFFLAGEIKPRTRAYNALLKGYV--KIGSLKNAEQVLDEMSQCGVAPDEATYSLLV 334
Query: 416 KALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASG-- 473
A GR +LK ME G SS + S+I G+ +A + M ASG
Sbjct: 335 DAYTRAGRWESARILLKEMEADGVKPSSYVFSRILAGFRDRGEWQKAFAVLREMHASGVR 394
Query: 474 ----------------------SDVGDKM-----------WVSLIKGHCVAGDLDKAADC 500
D D+M W +LI HC G D+A +
Sbjct: 395 PDRHFYNVMIDTFGKYNCLGHAMDAFDRMREEGIEPDVVTWNTLIDAHCKGGRHDRAIEL 454
Query: 501 FQKMVEKE---GTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELI 557
F +M E GT+ I+LL + + + + + ++E L P TY L+
Sbjct: 455 FDEMRESNCPLGTTTYNIMINLL-----GEEQRWEGVEAMLAEMKEQGLVPNIITYTTLV 509
Query: 558 KNLLVQRGFKDALSLLCLMKDHGF---PPFVDPFIKYVSKSGTSDDAIAFLKGMTSKRFP 614
FK+A+ + MK G P + ++ G +D A+ +K M +
Sbjct: 510 DVYGRSGRFKEAVDCIEAMKADGLKPSPTMYHALVNAYAQRGLADHALNVVKAMRADGLE 569
Query: 615 SMSVVL-CLFAAFFQARRHSEAQDLL 639
+ +VVL L AF + RR +EA +L
Sbjct: 570 ASTVVLNSLINAFGEDRRIAEAFSVL 595
Score = 49.3 bits (116), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 57/286 (19%), Positives = 106/286 (37%), Gaps = 40/286 (13%)
Query: 282 KKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVK 341
+KA R SG V+ D YN M G+ +C+ D MR +G E ++ T
Sbjct: 379 QKAFAVLREMHASG-VRPDRHFYNVMIDTFGKYNCLGHAMDAFDRMREEGIEPDVVTWNT 437
Query: 342 VLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRE 401
++ + A++L++ RE
Sbjct: 438 LIDAHCKGGRHDRAIELFD-------------------------------------EMRE 460
Query: 402 NGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDE 461
+ L N ++ L R +L M+E G + + + + +G+ E
Sbjct: 461 SNCPLGTTTYNIMINLLGEEQRWEGVEAMLAEMKEQGLVPNIITYTTLVDVYGRSGRFKE 520
Query: 462 ANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLV 521
A + ++ M+A G M+ +L+ + G D A + + M +G + ++ L+
Sbjct: 521 AVDCIEAMKADGLKPSPTMYHALVNAYAQRGLADHALNVVKAM-RADGLEASTVVLNSLI 579
Query: 522 NTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFK 567
N + R +A V ++E L+P TY L+K L+ F+
Sbjct: 580 NAFGEDRRIAEAFS-VLQFMKENGLRPDVITYTTLMKALIRVEQFE 624
>gi|414590400|tpg|DAA40971.1| TPA: hypothetical protein ZEAMMB73_404079 [Zea mays]
Length = 745
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 100/472 (21%), Positives = 187/472 (39%), Gaps = 29/472 (6%)
Query: 119 KQLELSGVVFTHEMVLKVLKNLESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVGVHG 178
++L G+ + E VL L DEA F + K + +YN++L+ + G
Sbjct: 221 RRLRQYGISPSPEACNAVLSRLPL--DEAIELFQELPHK-----NVCSYNILLKALCDAG 273
Query: 179 LVQEFWGLVDVMKKK----GYGVASHVRNKMTEKFEKEGLESDLEKLKGIFATGSIDNSI 234
V++ L D M YG+ H + E LE+ ++ L + A G N+
Sbjct: 274 RVKDARQLFDEMASAPDVVTYGILIHGHCALGE------LENAVKLLDEMVAGGVEPNAT 327
Query: 235 EKVASRICKVVRSDIWGDDVERQLRDL---NVTFSNDLVKFVVDKLGDEPK--KALIFFR 289
V + + ++ W D R + D+ V L V+ ++ A +F
Sbjct: 328 --VYTSVVALLCDKGWISDALRVVEDMVQRKVILDEALYTTVLSGFCNKGDLVSARRWFD 385
Query: 290 WAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSER 349
+ G D +Y M + L R ++ K+L EM ++ +++ T ++ + +R
Sbjct: 386 EMQRKGLAT-DGVTYTTMINGLCRAVELEEAEKLLQEMWARRLDVDEVTYTVLIDGYCKR 444
Query: 350 NMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDA 409
+ EA ++ + P+V T L + KQ D++ ++++ G L
Sbjct: 445 GKMAEAFQMHNAMVQRGVTPNVVTYTALTDGLC--KQGDVQAANELLHEMSNKGLELNAC 502
Query: 410 MLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHM 469
NS++ L G + + + + M+ + + L +G D A+ + M
Sbjct: 503 TYNSLINGLCKAGYLEQAMRTMADMDTACLKPDVYTYTTLIDALCKSGDLDRAHSLLQEM 562
Query: 470 EASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNR 529
G + L+ G C++G ++ M+EK +A + L+ YC +N
Sbjct: 563 LDKGIKPTIVTYNVLMNGFCMSGRVEGGKKLLDWMLEKNIHPNAA-TYNSLMKQYCIENN 621
Query: 530 AIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGF 581
+ + ++ +R D+ P TY LIK R K+AL M GF
Sbjct: 622 -MKSTTEIYKGMRSRDVGPNENTYNILIKGHCKARNMKEALYFHDEMIQKGF 672
Score = 48.5 bits (114), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 80/392 (20%), Positives = 149/392 (38%), Gaps = 61/392 (15%)
Query: 296 FVKHDESSYNAMASVLGRED----CIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNM 351
FV+H S+Y +S D C+ +L +R G E C VL R
Sbjct: 189 FVEHYISTYKTFSSDPASFDFLLLCLPS-APLLRRLRQYGISPSPEACNAVLSRLP---- 243
Query: 352 VKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAML 411
+ EA++L++ P N C++ I++ D ++F E +
Sbjct: 244 LDEAIELFQ------ELPHKNVCSY---NILLKALCDAGRVKDARQLFDEMASAPDVVTY 294
Query: 412 NSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEA 471
++ ++G + K+L M GG ++ + + + L G +A ++ M
Sbjct: 295 GILIHGHCALGELENAVKLLDEMVAGGVEPNATVYTSVVALLCDKGWISDALRVVEDMVQ 354
Query: 472 SGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEK----EGTSHAGY------AIDL-- 519
+ + ++ +++ G C GDL A F +M K +G ++ A++L
Sbjct: 355 RKVILDEALYTTVLSGFCNKGDLVSARRWFDEMQRKGLATDGVTYTTMINGLCRAVELEE 414
Query: 520 ----------------------LVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELI 557
L++ YC + + +A + +HN + + + P TY L
Sbjct: 415 AEKLLQEMWARRLDVDEVTYTVLIDGYCKRGKMAEAFQ-MHNAMVQRGVTPNVVTYTALT 473
Query: 558 KNLLVQRGFKDALSLLCLMKDHGF---PPFVDPFIKYVSKSGTSDDAIAFLKGM-TSKRF 613
L Q + A LL M + G + I + K+G + A+ + M T+
Sbjct: 474 DGLCKQGDVQAANELLHEMSNKGLELNACTYNSLINGLCKAGYLEQAMRTMADMDTACLK 533
Query: 614 PSMSVVLCLFAAFFQA----RRHSEAQDLLSK 641
P + L A ++ R HS Q++L K
Sbjct: 534 PDVYTYTTLIDALCKSGDLDRAHSLLQEMLDK 565
Score = 46.2 bits (108), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 55/250 (22%), Positives = 96/250 (38%), Gaps = 6/250 (2%)
Query: 394 KVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRL 453
+VV + +L +A+ +VL + G + + M+ G + + L
Sbjct: 347 RVVEDMVQRKVILDEALYTTVLSGFCNKGDLVSARRWFDEMQRKGLATDGVTYTTMINGL 406
Query: 454 SSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHA 513
A + +EA + + M A DV + + LI G+C G + +A MV++ G +
Sbjct: 407 CRAVELEEAEKLLQEMWARRLDVDEVTYTVLIDGYCKRGKMAEAFQMHNAMVQR-GVTPN 465
Query: 514 GYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLL 573
L + C + A + +H + L+ TY LI L + A+ +
Sbjct: 466 VVTYTALTDGLCKQGDVQAANELLHE-MSNKGLELNACTYNSLINGLCKAGYLEQAMRTM 524
Query: 574 CLMKDHGFPPFVDPF---IKYVSKSGTSDDAIAFLKGMTSKRF-PSMSVVLCLFAAFFQA 629
M P V + I + KSG D A + L+ M K P++ L F +
Sbjct: 525 ADMDTACLKPDVYTYTTLIDALCKSGDLDRAHSLLQEMLDKGIKPTIVTYNVLMNGFCMS 584
Query: 630 RRHSEAQDLL 639
R + LL
Sbjct: 585 GRVEGGKKLL 594
Score = 38.9 bits (89), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 50/242 (20%), Positives = 100/242 (41%), Gaps = 5/242 (2%)
Query: 303 SYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAV-DLYEF 361
+Y A+ L ++ + ++L EM +KG E+ T ++ + +++A+ + +
Sbjct: 468 TYTALTDGLCKQGDVQAANELLHEMSNKGLELNACTYNSLINGLCKAGYLEQAMRTMADM 527
Query: 362 AMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISV 421
AC KP V T L+ + S LD R S +++ + G T N ++
Sbjct: 528 DTACL-KPDVYTYTTLIDALCKSGDLD-RAHS-LLQEMLDKGIKPTIVTYNVLMNGFCMS 584
Query: 422 GRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMW 481
GR+ K+L M E ++ + + + E M + + +
Sbjct: 585 GRVEGGKKLLDWMLEKNIHPNAATYNSLMKQYCIENNMKSTTEIYKGMRSRDVGPNENTY 644
Query: 482 VSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCV 541
LIKGHC A ++ +A +M++K G + L+ K + ++A + H+
Sbjct: 645 NILIKGHCKARNMKEALYFHDEMIQK-GFRLTATSYSALIRLLNKKKKFVEARELFHDMR 703
Query: 542 RE 543
+E
Sbjct: 704 KE 705
>gi|15222753|ref|NP_175959.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75140283|sp|Q7X6A5.1|PPR81_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g55630
gi|30793841|gb|AAP40373.1| unknown protein [Arabidopsis thaliana]
gi|30794021|gb|AAP40457.1| unknown protein [Arabidopsis thaliana]
gi|110739296|dbj|BAF01561.1| hypothetical protein [Arabidopsis thaliana]
gi|332195155|gb|AEE33276.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 477
Score = 64.7 bits (156), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 85/386 (22%), Positives = 150/386 (38%), Gaps = 16/386 (4%)
Query: 238 ASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVV---------DKLGDEPKKALIFF 288
ASR+ ++ D G + + L +LNV+ S LV+ V+ D K A FF
Sbjct: 80 ASRVLDTLQQDCPGFNTKSALDELNVSISGLLVREVLVGILRTLSFDNKTRCAKLAYKFF 139
Query: 289 RWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSE 348
W +H + Y+ + + +++DEM GY T ++ E
Sbjct: 140 VWCGGQENFRHTANCYHLLMKIFAECGEYKAMCRLIDEMIKDGYPTTACTFNLLICTCGE 199
Query: 349 RNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTD 408
+ ++ V+ + + +P + +L ++ KQ +L V E+G
Sbjct: 200 AGLARDVVEQFIKSKTFNYRPYKHSYNAILHSLLGVKQY--KLIDWVYEQMLEDGFTPDV 257
Query: 409 AMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDH 468
N V+ A +G+ ++L M + GF + + L++ K A ++H
Sbjct: 258 LTYNIVMFANFRLGKTDRLYRLLDEMVKDGFSPDLYTYNILLHHLATGNKPLAALNLLNH 317
Query: 469 MEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKN 528
M G + G + +LI G AG L+ A F K G + +++ Y S
Sbjct: 318 MREVGVEPGVIHFTTLIDGLSRAGKLE-ACKYFMDETVKVGCTPDVVCYTVMITGYISGG 376
Query: 529 RAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGF-PPFV-- 585
A + + L P TY +I+ + FK+A +LL M+ G P FV
Sbjct: 377 ELEKAEEMFKEMTEKGQL-PNVFTYNSMIRGFCMAGKFKEACALLKEMESRGCNPNFVVY 435
Query: 586 DPFIKYVSKSGTSDDAIAFLKGMTSK 611
+ + +G +A +K M K
Sbjct: 436 STLVNNLKNAGKVLEAHEVVKDMVEK 461
>gi|125600636|gb|EAZ40212.1| hypothetical protein OsJ_24656 [Oryza sativa Japonica Group]
Length = 661
Score = 64.7 bits (156), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 88/386 (22%), Positives = 148/386 (38%), Gaps = 50/386 (12%)
Query: 297 VKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAV 356
++ D ++ + S R D ++L ++ G ++ V EA
Sbjct: 217 LEPDAPLFSDLISAFARARLPDAALELLASAQAIGLTPRSNAVTALISSLGSARRVAEAE 276
Query: 357 DLY-EFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVL 415
L+ EF +A + KP LL+ V K ++ +V+ + G +A + ++
Sbjct: 277 ALFLEFFLAGEIKPRTRAYNALLKGYV--KIGSLKNAEQVLDEMSQCGVAPDEATYSLLV 334
Query: 416 KALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGS- 474
A GR +LK ME G SS + S+I G+ +A + M ASG
Sbjct: 335 DAYTRAGRWESARILLKEMEADGVKPSSYVFSRILAGFRDRGEWQKAFAVLREMHASGVR 394
Query: 475 -----------------------DVGDKM-----------WVSLIKGHCVAGDLDKAADC 500
D D+M W +LI HC G D+A +
Sbjct: 395 PDRHFYNVMIDTFGKYNCLGHAMDAFDRMREEGIEPDVVTWNTLIDAHCKGGRHDRAIEL 454
Query: 501 FQKMVEKE---GTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELI 557
F +M E GT+ I+LL + + + + + ++E L P TY L+
Sbjct: 455 FDEMRESNCPLGTTTYNIMINLL-----GEEQRWEGVEAMLAEMKEQGLVPNIITYTTLV 509
Query: 558 KNLLVQRGFKDALSLLCLMKDHGF---PPFVDPFIKYVSKSGTSDDAIAFLKGMTSKRFP 614
FK+A+ + MK G P + ++ G +D A+ +K M +
Sbjct: 510 DVYGRSGRFKEAVDCIEAMKADGLKPSPTMYHALVNAYAQRGLADHALNVVKAMRADGLE 569
Query: 615 SMSVVL-CLFAAFFQARRHSEAQDLL 639
+ +VVL L AF + RR +EA +L
Sbjct: 570 ASTVVLNSLINAFGEDRRIAEAFSVL 595
Score = 49.3 bits (116), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 57/286 (19%), Positives = 106/286 (37%), Gaps = 40/286 (13%)
Query: 282 KKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVK 341
+KA R SG V+ D YN M G+ +C+ D MR +G E ++ T
Sbjct: 379 QKAFAVLREMHASG-VRPDRHFYNVMIDTFGKYNCLGHAMDAFDRMREEGIEPDVVTWNT 437
Query: 342 VLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRE 401
++ + A++L++ RE
Sbjct: 438 LIDAHCKGGRHDRAIELFD-------------------------------------EMRE 460
Query: 402 NGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDE 461
+ L N ++ L R +L M+E G + + + + +G+ E
Sbjct: 461 SNCPLGTTTYNIMINLLGEEQRWEGVEAMLAEMKEQGLVPNIITYTTLVDVYGRSGRFKE 520
Query: 462 ANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLV 521
A + ++ M+A G M+ +L+ + G D A + + M +G + ++ L+
Sbjct: 521 AVDCIEAMKADGLKPSPTMYHALVNAYAQRGLADHALNVVKAM-RADGLEASTVVLNSLI 579
Query: 522 NTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFK 567
N + R +A V ++E L+P TY L+K L+ F+
Sbjct: 580 NAFGEDRRIAEAFS-VLQFMKENGLRPDVITYTTLMKALIRVEQFE 624
>gi|302776386|ref|XP_002971363.1| hypothetical protein SELMODRAFT_451140 [Selaginella moellendorffii]
gi|300161345|gb|EFJ27961.1| hypothetical protein SELMODRAFT_451140 [Selaginella moellendorffii]
Length = 745
Score = 64.7 bits (156), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 67/296 (22%), Positives = 123/296 (41%), Gaps = 24/296 (8%)
Query: 219 EKLKGIFATGSIDNSIEKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLG 278
E K GS + +E A + V+R W +D + ++ L V + N LV V +
Sbjct: 101 EPFKSRDTIGSFFSKME-AAIEVGNVLREMGWNEDSQVKVEKLKVPW-NPLVVLQVLRQP 158
Query: 279 DEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMET 338
EP A FF+W + +H E +YN++ V GR + KVLD+M + G M +
Sbjct: 159 LEPDAAWGFFQWLKGVEGYRHTEHTYNSLIEVFGRVKDVTGIQKVLDDMSAYGCGMNVVL 218
Query: 339 CVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRV 398
V+ +S + + AV+++ + P+V T L M L +K+ R
Sbjct: 219 FTTVIHWYSRADDIDRAVEMWNQMLKVGCLPNVVTYTML-----------MSLLTKLKR- 266
Query: 399 FRENGNVLTDAM----------LNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSK 448
FR+ G + D + +++ L S G + + + ++ ++
Sbjct: 267 FRQVGEIFKDMVSAGCRPNVRTYTVLIQCLASSGNLDAALLVFEKLDSLKASPTAATFRV 326
Query: 449 IAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKM 504
+ +SAG + + M+ + KM+ +++ AG L +AA + M
Sbjct: 327 LMDSAASAGDLELLKGLFEGMKKANQKPNGKMYFTVMDSLKKAGKLTEAAPLLEAM 382
Score = 47.4 bits (111), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 70/147 (47%), Gaps = 9/147 (6%)
Query: 284 ALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVL 343
AL FF W E+ KHD Y M S+LGR + ++L +++S E+ + T ++
Sbjct: 485 ALRFFYWVEKQPGYKHDSFVYTKMISLLGRHHHFSQVEELLMKLQSSDIEVSIVTMNSII 544
Query: 344 GRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRE-- 401
S + A+ ++ + K KP+ T ++ +V MR F + + +++E
Sbjct: 545 FTLSVSHNPDLAMKIFYWMKDLKVKPNTRTYTTVIDMLV-----KMRHFDRAMAIYQEML 599
Query: 402 NGNVLTDAMLNSVLKALISVGRMGECN 428
+ DA +VL + S+GR G+ +
Sbjct: 600 DAGCKPDAHTYTVL--IQSLGREGKID 624
>gi|357129397|ref|XP_003566348.1| PREDICTED: pentatricopeptide repeat-containing protein At3g62470,
mitochondrial-like [Brachypodium distachyon]
Length = 649
Score = 64.7 bits (156), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 89/434 (20%), Positives = 166/434 (38%), Gaps = 54/434 (12%)
Query: 239 SRICKVVRSDIWGD----DVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEES 294
R+C + +D+ ++E L L+ S LV V+D+ + + FF+WA S
Sbjct: 173 GRVCAAI-ADVMAAGADANLEATLSALSPPLSEALVLAVLDRFKHAHRPSRRFFQWAAAS 231
Query: 295 GFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKE 354
+H +Y M +LG+ + ++ EM G + M+ + F+ +K
Sbjct: 232 DEFEHTPVTYCKMLHILGKARQFETMVALVQEMGKAG-ALCMDAFKIAIKSFAAAGEIKN 290
Query: 355 AVDLYEFAMACK---NKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAML 411
AV ++E S NC L + + K+ R+F ++ + + T ML
Sbjct: 291 AVGVFEMMRVHGFDDGVESFNCLLVALAQEGLGKEA-ARVFDRMRDQYTPDLRSYTALML 349
Query: 412 NSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEA 471
A + + E ++ M E G + + + L ++ EA + + M+A
Sbjct: 350 -----AWCNARNLVEAGRVWNDMLEKGMKPDVVVHNTMIDGLLRGQRRPEAVKMFELMKA 404
Query: 472 SGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKM--------------------------- 504
G + LI+ HC G LD A CF++M
Sbjct: 405 KGPPPNVWTYTMLIRDHCKQGKLDMAMRCFEEMQVAGCQPEVATYTCLLVGYGNAKRMDR 464
Query: 505 -------VEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELI 557
+ ++G G + L+ ++N DA + + + L+P TY ++
Sbjct: 465 VTAMLEEMAQKGCPPDGRTYNALIKLLTNRNMPDDAVRIYKKMITK-GLEPTIHTYNMMM 523
Query: 558 KN-LLVQRGFKDALSLLCLMKDHGFPPFVDPFIKYVS---KSGTSDDAIAFLKGMTSKRF 613
K+ L R + ++ M G P V+ + +++ + G +A FL+ M K
Sbjct: 524 KSYFLGGRNYAMGCAVWEEMHRKGICPDVNSYTVFINGHIRHGRPAEACKFLEEMIQKGM 583
Query: 614 PSMSVVLCLFAAFF 627
+ + FAA F
Sbjct: 584 KAPQIDYNKFAADF 597
Score = 58.5 bits (140), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 95/450 (21%), Positives = 167/450 (37%), Gaps = 53/450 (11%)
Query: 102 TVVSDIFYKFSDVNDISKQLELSGVVFTHEMVLKVLKNLESSPDEARRFFNWVLEKESER 161
++D+ +D N + L + +VL VL + + +RRFF W +
Sbjct: 177 AAIADVMAAGADAN-LEATLSALSPPLSEALVLAVLDRFKHAHRPSRRFFQWAAASDEFE 235
Query: 162 LSSKTYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRNKMTEKFEKEGLESDLEK- 220
+ TY ML I+G + LV M K G L D K
Sbjct: 236 HTPVTYCKMLHILGKARQFETMVALVQEMGKAG------------------ALCMDAFKI 277
Query: 221 -LKGIFATGSIDNSIEKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGD 279
+K A G I N++ + +++R + D VE +F+ LV + LG
Sbjct: 278 AIKSFAAAGEIKNAVG-----VFEMMRVHGFDDGVE--------SFNCLLVALAQEGLGK 324
Query: 280 EPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEM--- 336
E A +F R ++ D SY A+ + +V ++M KG + ++
Sbjct: 325 E--AARVFDRMRDQ---YTPDLRSYTALMLAWCNARNLVEAGRVWNDMLEKGMKPDVVVH 379
Query: 337 ETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVV 396
T + L R R EAV ++E A P+V T L+R +LDM +
Sbjct: 380 NTMIDGLLRGQRR---PEAVKMFELMKAKGPPPNVWTYTMLIRDHCKQGKLDM-----AM 431
Query: 397 RVFRE---NGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRL 453
R F E G A +L + RM +L+ M + G + + L
Sbjct: 432 RCFEEMQVAGCQPEVATYTCLLVGYGNAKRMDRVTAMLEEMAQKGCPPDGRTYNALIKLL 491
Query: 454 SSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHA 513
++ D+A M G + + ++K + + G + + ++G
Sbjct: 492 TNRNMPDDAVRIYKKMITKGLEPTIHTYNMMMKSYFLGGRNYAMGCAVWEEMHRKGICPD 551
Query: 514 GYAIDLLVNTYCSKNRAIDACKFVHNCVRE 543
+ + +N + R +ACKF+ +++
Sbjct: 552 VNSYTVFINGHIRHGRPAEACKFLEEMIQK 581
>gi|296081530|emb|CBI20053.3| unnamed protein product [Vitis vinifera]
Length = 634
Score = 64.7 bits (156), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 68/279 (24%), Positives = 117/279 (41%), Gaps = 12/279 (4%)
Query: 369 PSVNCCTFLLRKIVVSKQLDMR--LFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGE 426
P + C +L + +++M L++++ R+ R + V T N ++ L G++ +
Sbjct: 190 PKIETCNDMLSLFLKLNRMEMAWVLYAEMFRL-RISSTVYT---FNIMVNVLCKEGKLKK 245
Query: 427 CNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIK 486
+ + ME GF + + I SS G + A +D M G + + SLI
Sbjct: 246 AREFIGFMEGLGFKPNVVSYNTIIHGYSSRGNIEGARRILDAMRVKGIEPDSYTYGSLIS 305
Query: 487 GHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDL 546
G C G L++A+ F KMVE G + L++ YC+K A + V++ +
Sbjct: 306 GMCKEGRLEEASGLFDKMVEI-GLVPNAVTYNTLIDGYCNKGDLERAFSYRDEMVKK-GI 363
Query: 547 KPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPP---FVDPFIKYVSKSGTSDDAIA 603
P +TY L+ L ++ +A ++ M+ G P + I S+ G + A
Sbjct: 364 MPSVSTYNLLVHALFMEGRMGEADDMIKEMRKKGIIPDAITYNILINGYSRCGNAKKAFD 423
Query: 604 FLKGMTSKRF-PSMSVVLCLFAAFFQARRHSEAQDLLSK 641
M SK P+ L + R EA DL K
Sbjct: 424 LHNEMLSKGIEPTHVTYTSLIYVLSRRNRMKEADDLFEK 462
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 85/384 (22%), Positives = 156/384 (40%), Gaps = 44/384 (11%)
Query: 282 KKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVK 341
KKA F + E GF K + SYN + I+ ++LD MR KG E + T
Sbjct: 244 KKAREFIGFMEGLGF-KPNVVSYNTIIHGYSSRGNIEGARRILDAMRVKGIEPDSYTYGS 302
Query: 342 VLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRE 401
++ + ++EA L++ + P+ L+ L+ R FS + ++
Sbjct: 303 LISGMCKEGRLEEASGLFDKMVEIGLVPNAVTYNTLIDGYCNKGDLE-RAFSYRDEMVKK 361
Query: 402 NGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASS------------------ 443
G + + + N ++ AL GRMGE + ++K M + G I +
Sbjct: 362 -GIMPSVSTYNLLVHALFMEGRMGEADDMIKEMRKKGIIPDAITYNILINGYSRCGNAKK 420
Query: 444 ------NMKSK-----------IAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIK 486
M SK + + LS + EA++ + + G M+ +++
Sbjct: 421 AFDLHNEMLSKGIEPTHVTYTSLIYVLSRRNRMKEADDLFEKILDQGVSPDVIMFNAMVD 480
Query: 487 GHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDL 546
GHC G++++A ++M +++ + L+ C + + ++ + + + ++ +
Sbjct: 481 GHCANGNVERAFMLLKEM-DRKSVPPDEVTFNTLMQGRCREGK-VEEARMLLDEMKRRGI 538
Query: 547 KPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFV---DPFIKYVSKSGTSDDAIA 603
KP H +Y LI + KDA + M GF P + + IK + K+ D A
Sbjct: 539 KPDHISYNTLISGYGRRGDIKDAFRVRDEMLSIGFNPTLLTYNALIKCLCKNQEGDLAEE 598
Query: 604 FLKGMTSKRF-PSMSVVLCLFAAF 626
LK M +K P S L L
Sbjct: 599 LLKEMVNKGISPDDSTYLSLIEGM 622
Score = 47.0 bits (110), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 89/415 (21%), Positives = 167/415 (40%), Gaps = 55/415 (13%)
Query: 120 QLELSGVVFTHEMVLKVLKNLESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGL 179
+L +S V+T +++ VL E +AR F + +E + + +YN ++ G
Sbjct: 220 RLRISSTVYTFNIMVNVLCK-EGKLKKAREFIGF-MEGLGFKPNVVSYNTIIHGYSSRGN 277
Query: 180 VQEFWGLVDVMKKKGYGVASHVRNKMTEKFEKEGLESDLEKLKGIF----ATGSIDNSI- 234
++ ++D M+ KG S+ + KEG LE+ G+F G + N++
Sbjct: 278 IEGARRILDAMRVKGIEPDSYTYGSLISGMCKEG---RLEEASGLFDKMVEIGLVPNAVT 334
Query: 235 -EKVASRICK---VVRSDIWGDDVERQLRDLNVTFSNDLVK--FVVDKLGDEPKKALIFF 288
+ C + R+ + D++ ++ +V+ N LV F+ ++G+ A
Sbjct: 335 YNTLIDGYCNKGDLERAFSYRDEMVKKGIMPSVSTYNLLVHALFMEGRMGE----ADDMI 390
Query: 289 RWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSE 348
+ + G + D +YN + + R + + + +EM SKG E T ++ S
Sbjct: 391 KEMRKKGIIP-DAITYNILINGYSRCGNAKKAFDLHNEMLSKGIEPTHVTYTSLIYVLSR 449
Query: 349 RNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTD 408
RN +KEA DL+E + P D+ +F+ +V NGNV
Sbjct: 450 RNRMKEADDLFEKILDQGVSP------------------DVIMFNAMVDGHCANGNVERA 491
Query: 409 AML----------------NSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFR 452
ML N++++ G++ E +L M+ G + +
Sbjct: 492 FMLLKEMDRKSVPPDEVTFNTLMQGRCREGKVEEARMLLDEMKRRGIKPDHISYNTLISG 551
Query: 453 LSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEK 507
G +A D M + G + + +LIK C + D A + ++MV K
Sbjct: 552 YGRRGDIKDAFRVRDEMLSIGFNPTLLTYNALIKCLCKNQEGDLAEELLKEMVNK 606
>gi|242073534|ref|XP_002446703.1| hypothetical protein SORBIDRAFT_06g020845 [Sorghum bicolor]
gi|241937886|gb|EES11031.1| hypothetical protein SORBIDRAFT_06g020845 [Sorghum bicolor]
Length = 802
Score = 64.7 bits (156), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 96/404 (23%), Positives = 170/404 (42%), Gaps = 57/404 (14%)
Query: 295 GFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKE 354
GFV D S+Y+ + + L +++ + + EM+S G ++ T ++ F + ++++
Sbjct: 283 GFVP-DTSTYSKVITFLCEAMKVEKAFLLFQEMKSVGVNPDVYTYTILIDSFCKAGLIEQ 341
Query: 355 AVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMR--LFSKVVRVFRENGNVLTDAMLN 412
A ++ + +V T LL + +KQL +F++++ + A+++
Sbjct: 342 ARSWFDEMRSIGCSANVVTYTALLHAYLKAKQLPQASDIFNRMIDAGCPPNTITYSALVD 401
Query: 413 SVLKALISVGRMGECNKILKAMEEGGFIASS-NMKSKIAFR------------------- 452
+ KA GE K + + I +S N+ S F
Sbjct: 402 GLCKA-------GEIQKACEVYTK--LIGTSDNVGSDFYFEGKHTDSIAPNVVTYGALID 452
Query: 453 -LSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTS 511
L A K +A E +D M ++G + ++ +LI G C G +D A + F +M S
Sbjct: 453 GLCKAHKVVDAQELLDAMLSNGCEPNHIIYDALIDGFCKVGKIDNAQEVFLRM------S 506
Query: 512 HAGYAIDLLVNTYCS------KNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRG 565
GY V+TY S K+R +D V + + E P TY +I L
Sbjct: 507 KCGYLPT--VHTYTSLIDAMFKDRRLDLAMKVLSQMVESSCTPNVVTYTAMIDGLCRIGE 564
Query: 566 FKDALSLLCLMKDHGFPPFVDPF---IKYVSKSGTSDDAIAFLKGMTSKRF-PSMSVVLC 621
+ AL LL +M++ G P V + I + KSG D ++ M++K P+
Sbjct: 565 CQKALKLLSMMEEKGCSPNVVTYTALIDGLGKSGKVDLSLQLFIQMSTKGCAPNYVTYRV 624
Query: 622 LFAAFFQARRHSEAQDLLSKC-----PRYVRNHADVLNLLYSKK 660
L A EA LLS+ P+Y++ + V+ +SKK
Sbjct: 625 LINHCCAAGLLDEAHSLLSEMKQTYWPKYLQGYCSVVQ-GFSKK 667
Score = 47.4 bits (111), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 67/307 (21%), Positives = 104/307 (33%), Gaps = 55/307 (17%)
Query: 389 MRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSK 448
+ L KV + VL + + L +G+ +I+K M GF+ ++ SK
Sbjct: 234 LALAEKVYEEMLASSCVLNKVNTANFARCLCGMGKFDMAFQIIKVMMGKGFVPDTSTYSK 293
Query: 449 I------------AFRL-----------------------SSAGKKDEANEFMDHMEASG 473
+ AF L AG ++A + D M + G
Sbjct: 294 VITFLCEAMKVEKAFLLFQEMKSVGVNPDVYTYTILIDSFCKAGLIEQARSWFDEMRSIG 353
Query: 474 SDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDA 533
+ +L+ + A L +A+D F +M++ G LV+ C A
Sbjct: 354 CSANVVTYTALLHAYLKAKQLPQASDIFNRMIDA-GCPPNTITYSALVDGLCKAGEIQKA 412
Query: 534 CKFVHNCVREYD---------------LKPWHTTYEELIKNLLVQRGFKDALSLLCLMKD 578
C+ + D + P TY LI L DA LL M
Sbjct: 413 CEVYTKLIGTSDNVGSDFYFEGKHTDSIAPNVVTYGALIDGLCKAHKVVDAQELLDAMLS 472
Query: 579 HGFPP---FVDPFIKYVSKSGTSDDAI-AFLKGMTSKRFPSMSVVLCLFAAFFQARRHSE 634
+G P D I K G D+A FL+ P++ L A F+ RR
Sbjct: 473 NGCEPNHIIYDALIDGFCKVGKIDNAQEVFLRMSKCGYLPTVHTYTSLIDAMFKDRRLDL 532
Query: 635 AQDLLSK 641
A +LS+
Sbjct: 533 AMKVLSQ 539
>gi|255556711|ref|XP_002519389.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223541456|gb|EEF43006.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 634
Score = 64.7 bits (156), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 75/350 (21%), Positives = 144/350 (41%), Gaps = 25/350 (7%)
Query: 282 KKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVK 341
+KA R GF+ D S+Y+ + L +++ +++ EM+ G ++ T
Sbjct: 104 EKAYNVIREMMSKGFIP-DSSTYSKVIGYLCNASKVEKAFQLFQEMKRNGITPDVYTYTT 162
Query: 342 VLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRE 401
+L RF + ++++A + ++ P+V T L+ + +++L +++ +
Sbjct: 163 LLDRFCKVGLIEQARNWFDEMQQDGCAPNVVTYTALIHAYLKTRKLSRA--NEIFEMMLS 220
Query: 402 NGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGF----------IASSNMK----- 446
NG V +++ G + +I M+ I S +K
Sbjct: 221 NGCVPNIVTYTALIDGHCKAGETEKACQIYARMKNDKVDIPDVDIYFRIVDSELKEPNVV 280
Query: 447 --SKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKM 504
+ L A K EA + ++ M G + ++ +LI G C G LD+A + F KM
Sbjct: 281 TYGALVDGLCKAHKVKEARDLLETMSLEGCEPNQIIYDALIDGFCKVGKLDEAQEVFTKM 340
Query: 505 VEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQR 564
+ G S Y L++ K++ +D V + E P Y E++ L
Sbjct: 341 L-GHGCSPNVYTYSSLIDKL-FKDKRLDLALKVLTKMLENSCAPNVVIYTEMVDGLCKVG 398
Query: 565 GFKDALSLLCLMKDHGFPPFVDPFIKYV---SKSGTSDDAIAFLKGMTSK 611
+A L+ +M++ G P V + + K+G D + L+ MTSK
Sbjct: 399 KTDEAYRLMLMMEEKGCYPNVVTYTAMIDGFGKAGRVDRCLELLQLMTSK 448
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 77/365 (21%), Positives = 138/365 (37%), Gaps = 28/365 (7%)
Query: 286 IFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGR 345
I+FR + S + + +Y A+ L + + +L+ M +G E ++
Sbjct: 265 IYFRIVD-SELKEPNVVTYGALVDGLCKAHKVKEARDLLETMSLEGCEPNQIIYDALIDG 323
Query: 346 FSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNV 405
F + + EA +++ + P+V + L+ K+ K+LD+ L KV+ EN
Sbjct: 324 FCKVGKLDEAQEVFTKMLGHGCSPNVYTYSSLIDKLFKDKRLDLAL--KVLTKMLENSCA 381
Query: 406 LTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEF 465
+ ++ L VG+ E +++ MEE G + + + AG+ D E
Sbjct: 382 PNVVIYTEMVDGLCKVGKTDEAYRLMLMMEEKGCYPNVVTYTAMIDGFGKAGRVDRCLEL 441
Query: 466 MDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYC 525
+ M + G + LI C AG LD A ++M + H G
Sbjct: 442 LQLMTSKGCAPNFITYRVLINHCCAAGLLDDAHKLLEEMKQTYWPKHIG----------- 490
Query: 526 SKNRAIDACKFVHNCVREYDL---------KPWHTTYEELIKNLLVQRGFKDALSLLCLM 576
+ I+ F H V L P Y+ LI N + + AL L +
Sbjct: 491 MYRKVIEG--FSHEFVASLGLLAELSEDGSVPILPVYKLLIDNFIKAGRLEMALELHEEL 548
Query: 577 KDH--GFPPFVDPFIKYVSKSGTSDDAIAFLKGMTSKRF-PSMSVVLCLFAAFFQARRHS 633
+ I+ ++ + D A MT + F P +S+++CL + +
Sbjct: 549 SSFSAAYQNTYVSLIESLTLACKVDKAFKLYSDMTRRGFVPELSMLVCLIKGLLRVGKWE 608
Query: 634 EAQDL 638
EA L
Sbjct: 609 EALQL 613
Score = 42.4 bits (98), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 66/336 (19%), Positives = 130/336 (38%), Gaps = 32/336 (9%)
Query: 355 AVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQL-DMRLFSKVVRVFREN---GNVLTDAM 410
A L + + C +P L+ I ++ L M + R + E G VL
Sbjct: 30 AYKLLKKMVICGYQPGYVVYNILIGGICSTEDLPSMEVIGLAERAYNEMLEMGVVLNKVN 89
Query: 411 LNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHME 470
+ + + L +G+ + +++ M GFI S+ SK+ L +A K ++A + M+
Sbjct: 90 VCNFTRCLCCIGKFEKAYNVIREMMSKGFIPDSSTYSKVIGYLCNASKVEKAFQLFQEMK 149
Query: 471 ASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRA 530
+G + +L+ C G +++A + F +M +++G + L++ Y K R
Sbjct: 150 RNGITPDVYTYTTLLDRFCKVGLIEQARNWFDEM-QQDGCAPNVVTYTALIHAY-LKTRK 207
Query: 531 IDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFP-PFVDPFI 589
+ + + P TY LI + A + MK+ P VD +
Sbjct: 208 LSRANEIFEMMLSNGCVPNIVTYTALIDGHCKAGETEKACQIYARMKNDKVDIPDVDIYF 267
Query: 590 KYVSKSGTSDDAI---AFLKGMTSKR--------FPSMSVVLC---------LFAAFFQA 629
+ V + + A + G+ +MS+ C L F +
Sbjct: 268 RIVDSELKEPNVVTYGALVDGLCKAHKVKEARDLLETMSLEGCEPNQIIYDALIDGFCKV 327
Query: 630 RRHSEAQDLLSK-----CPRYVRNHADVLNLLYSKK 660
+ EAQ++ +K C V ++ +++ L+ K
Sbjct: 328 GKLDEAQEVFTKMLGHGCSPNVYTYSSLIDKLFKDK 363
>gi|449457967|ref|XP_004146719.1| PREDICTED: pentatricopeptide repeat-containing protein At4g30825,
chloroplastic-like [Cucumis sativus]
Length = 894
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 80/386 (20%), Positives = 162/386 (41%), Gaps = 49/386 (12%)
Query: 260 DLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDR 319
DL++ N ++K ++K D K L FF W +G +KH+ S+YN + VLGR++ D
Sbjct: 126 DLSLEDCNAILK-RLEKCND--SKTLGFFEWMRSNGKLKHNVSAYNLVLRVLGRQEDWDA 182
Query: 320 FWKVLDEMRSK-GYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLL 378
K+++E+R++ G +++ + ++ + V++ + + C+ +P N TF +
Sbjct: 183 AEKLIEEVRAELGSQLDFQVFNTLIYACYKSRFVEQGTKWFRMMLECQVQP--NVATFGM 240
Query: 379 RKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGG 438
+ K+ D++ R G ++ + S++ I + + ++++ M+E
Sbjct: 241 LMGLYQKKCDIKESEFAFNQMRNFG-IVCETAYASMITIYIRMNLYDKAEEVIQLMQEDK 299
Query: 439 FIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAA 498
I N+++ WV ++ +C G +++A
Sbjct: 300 VIP--NLEN---------------------------------WVVMLNAYCQQGKMEEAE 324
Query: 499 DCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIK 558
F M E+ G S A + L+ Y K +D + + ++ ++P TTY +I+
Sbjct: 325 LVFASM-EEAGFSSNIIAYNTLITGY-GKASNMDTAQRLFLGIKNSGVEPDETTYRSMIE 382
Query: 559 NLLVQRGFKDALSLLCLMKDHGFPPFVDPFIKYVSKSGTSDDAIAFLKGMTSKR----FP 614
+K A +K G+ P ++ +D LK + P
Sbjct: 383 GWGRAGNYKMAEWYYKELKRRGYMPNSSNLFTLINLQAKHEDEAGTLKTLNDMLKIGCRP 442
Query: 615 SMSVVLCLFAAFFQARRHSEAQDLLS 640
S S+V + A+ +ARR LL+
Sbjct: 443 S-SIVGNVLQAYEKARRMKSVPVLLT 467
Score = 47.0 bits (110), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 52/235 (22%), Positives = 102/235 (43%), Gaps = 5/235 (2%)
Query: 273 VVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGY 332
+ + G K A +++R + SG V D+ YN + + R +D ++ DEM G+
Sbjct: 628 IYQRCGMVHKLADLYYRILK-SG-VSWDQEMYNCVINCCSRALPVDELSRLFDEMLQCGF 685
Query: 333 EMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLF 392
T +L + + + +A +L+ A + + V+ ++ V K D +
Sbjct: 686 APNTVTLNVMLDVYGKSKLFTKARNLFGLA---QKRGLVDAISYNTMISVYGKNKDFKNM 742
Query: 393 SKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFR 452
S V+ + NG ++ N +L A +M +L+ M+E + +
Sbjct: 743 SSTVQKMKFNGFSVSLEAYNCMLDAYGKECQMENFRSVLQRMQETSSECDHYTYNIMINI 802
Query: 453 LSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEK 507
G DE E + ++A G + + +LIK + +AG +++AA ++M EK
Sbjct: 803 YGEQGWIDEVAEVLTELKACGLEPDLYSYNTLIKAYGIAGMVEEAAQLVKEMREK 857
>gi|38605763|emb|CAE05864.3| OSJNBa0044K18.6 [Oryza sativa Japonica Group]
Length = 902
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 78/334 (23%), Positives = 146/334 (43%), Gaps = 14/334 (4%)
Query: 282 KKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCV- 340
+ AL R E G + ++ +Y + S + +D KV DEM +KG E++ E +
Sbjct: 536 QAALDIMREMRERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKG-EVKPEAVMY 594
Query: 341 -KVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVF 399
++G + ++ + A+ LY M + ++ T+ L +V + +D R V
Sbjct: 595 NALIGGYCDQGKLDTAL-LYRDRMVERGV-AMTVATYNL--LVHALFMDGRGTEAYELVE 650
Query: 400 RENGNVLTDAML--NSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAG 457
G L + N ++ G + + +I + M G A+ + + + LS G
Sbjct: 651 EMGGKGLAPDVFTYNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTALIYALSKKG 710
Query: 458 KKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAI 517
+ E ++ D G ++ +LI H +G++D+A + +M EK+ +
Sbjct: 711 QVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEM-EKKRIAPDDVTY 769
Query: 518 DLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMK 577
+ L+ C R +A K + + E ++P TY LI ++ KDAL + M
Sbjct: 770 NTLMRGLCLLGRVDEARKLIDE-MTERGIQPDLVTYNTLISGYSMKGDVKDALRIRNEMM 828
Query: 578 DHGFPPFV---DPFIKYVSKSGTSDDAIAFLKGM 608
+ GF P + + I+ + K+G DDA +K M
Sbjct: 829 NKGFNPTLLTYNALIQGLCKNGQGDDAENMVKEM 862
Score = 53.9 bits (128), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 105/502 (20%), Positives = 205/502 (40%), Gaps = 46/502 (9%)
Query: 43 TLSSLLPTSSHTFYSRFSRLPICYSRLINLIDPKNPNFRNPMICSYSSEPAMEQKESDFT 102
+L +LL T+S + L + YSR+ +L P + +P++ + S PA F
Sbjct: 423 SLPNLLLTASAAVRPHATSLRL-YSRMKSLSLPISTASLHPLLSALPSAPA-------FA 474
Query: 103 VVSDIFYKFSDVNDISKQLELSGVVFTHEMVLKVLKNLESSPDEARRFFNWVLEKESERL 162
+ +D+F +L L T ++L+ +L S+ AR L ++ R
Sbjct: 475 LFADMF-----------RLRLPLCTTTFNIMLR---HLCSAGKPARAL---ELLRQMPRP 517
Query: 163 SSKTYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVA--SHVRNKMTEKFEKEG-LESDLE 219
++ TYN ++ G VQ ++ M+++G G+A + + + K G ++ ++
Sbjct: 518 NAVTYNTVIAGFCSRGRVQAALDIMREMRERG-GIAPNQYTYGTVISGWCKVGRVDEAVK 576
Query: 220 KLKGIFATGSIDNSIEKVASRI---CKVVRSD---IWGDD-VERQLRDLNVTFSNDLVKF 272
+ G + + I C + D ++ D VER + T++ +
Sbjct: 577 VFDEMLTKGEVKPEAVMYNALIGGYCDQGKLDTALLYRDRMVERGVAMTVATYNLLVHAL 636
Query: 273 VVDKLGDEPKKALIFFRWAEESGF--VKHDESSYNAMASVLGREDCIDRFWKVLDEMRSK 330
+D G E + EE G + D +YN + + +E + + ++ + M +
Sbjct: 637 FMDGRGTE------AYELVEEMGGKGLAPDVFTYNILINGHCKEGNVKKALEIFENMSRR 690
Query: 331 GYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMR 390
G + T ++ S++ V+E L++ A+ +P + L+ S +D R
Sbjct: 691 GVRATVVTYTALIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNID-R 749
Query: 391 LFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIA 450
F +++ + D N++++ L +GR+ E K++ M E G + +
Sbjct: 750 AF-EIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTERGIQPDLVTYNTLI 808
Query: 451 FRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGT 510
S G +A + M G + + +LI+G C G D A + ++MVE T
Sbjct: 809 SGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQGLCKNGQGDDAENMVKEMVENGIT 868
Query: 511 SHAGYAIDLLVNTYCSKNRAID 532
I L+ RAID
Sbjct: 869 PDDSTYISLIEGLTTEDERAID 890
Score = 47.4 bits (111), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 48/171 (28%), Positives = 71/171 (41%), Gaps = 4/171 (2%)
Query: 412 NSVLKALISVGRMGECNKILKAMEEGGFIASSNMK-SKIAFRLSSAGKKDEANEFMDHME 470
N+V+ S GR+ I++ M E G IA + + G+ DEA + D M
Sbjct: 523 NTVIAGFCSRGRVQAALDIMREMRERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEML 582
Query: 471 ASGSDVGDK-MWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNR 529
G + M+ +LI G+C G LD A +MVE+ G + +LLV+ R
Sbjct: 583 TKGEVKPEAVMYNALIGGYCDQGKLDTALLYRDRMVER-GVAMTVATYNLLVHALFMDGR 641
Query: 530 AIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHG 580
+A + V + L P TY LI + K AL + M G
Sbjct: 642 GTEAYELVEE-MGGKGLAPDVFTYNILINGHCKEGNVKKALEIFENMSRRG 691
Score = 43.5 bits (101), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 49/118 (41%), Gaps = 4/118 (3%)
Query: 453 LSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSH 512
L SAGK A E + M + + ++I G C G + A D ++M E+ G +
Sbjct: 498 LCSAGKPARALELLRQMPRPNA----VTYNTVIAGFCSRGRVQAALDIMREMRERGGIAP 553
Query: 513 AGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDAL 570
Y +++ +C R +A K + + ++KP Y LI Q AL
Sbjct: 554 NQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCDQGKLDTAL 611
>gi|296083865|emb|CBI24253.3| unnamed protein product [Vitis vinifera]
Length = 582
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 56/203 (27%), Positives = 89/203 (43%), Gaps = 5/203 (2%)
Query: 412 NSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEA 471
N+++ L ++ E +L ME G +S + + L G+ DEA E ++ M+
Sbjct: 37 NTLINGLCKAKKLKEAVGLLLEMEAAGCFPNSVTCTTLMDGLCKDGRMDEAMELLEAMKK 96
Query: 472 SGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAI 531
G D ++ +LI G C G+LD+ + F +M+ K G S LV+ C +
Sbjct: 97 KGFDADVVLYGTLISGFCNNGNLDRGKELFDEMLGK-GISANVVTYSCLVHGLCRLGQWK 155
Query: 532 DACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPP---FVDPF 588
+A V N + E+ + P TY LI L A+ LL LM + G P +
Sbjct: 156 EA-NTVLNAMAEHGIHPDVVTYTGLIDGLCKDGRATHAMDLLNLMVEKGEEPSNVTYNVL 214
Query: 589 IKYVSKSGTSDDAIAFLKGMTSK 611
+ + K G DA L+ M K
Sbjct: 215 LSGLCKEGLVIDAFKILRMMIEK 237
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 83/366 (22%), Positives = 145/366 (39%), Gaps = 44/366 (12%)
Query: 259 RDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCID 318
+D T + DL+ +V+K G+EP +YN + S L +E +
Sbjct: 185 KDGRATHAMDLLNLMVEK-GEEPSNV------------------TYNVLLSGLCKEGLVI 225
Query: 319 RFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLL 378
+K+L M KG + ++ T ++ ++ V EA+ L+ +N N TF
Sbjct: 226 DAFKILRMMIEKGKKADVVTYNTLMKGLCDKGKVDEALKLFNSMFDNENCLEPNVFTF-- 283
Query: 379 RKIVVSKQLDMRLFSKVVRVFREN------GNVLTDAMLNSVLKALISVGRMGECNKILK 432
+++ +K V++ R+ GN++T ML L + G++ E ++ K
Sbjct: 284 -NMLIGGLCKEGRLTKAVKIHRKMVKKGSCGNLVTYNML---LGGCLKAGKIKEAMELWK 339
Query: 433 AMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAG 492
+ + GF+ +S S + + A M G + + +L+ C G
Sbjct: 340 QVLDLGFVPNSFTYSILIDGFCKMRMLNIAKGLFCEMRTHGLNPALFDYNTLMASLCKEG 399
Query: 493 DLDKAADCFQKMVEKEGTSHAGYAIDLL-VNTYCSKNRAIDACKFVHNC---VREYDLKP 548
L++A FQ+M +A D++ NT +FV + E L+P
Sbjct: 400 SLEQAKSLFQEM------GNANCEPDIISFNTMIDGTLKAGDFQFVKELQMKMVEMGLRP 453
Query: 549 WHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPP---FVDPFIKYVSKSGTSDDAIAFL 605
T+ LI L +A S L M GF P D +K +S G + + I L
Sbjct: 454 DALTFSTLINRLSKLGELDEAKSALERMVASGFTPDALVYDSLLKGLSSKGDTTEIINLL 513
Query: 606 KGMTSK 611
M +K
Sbjct: 514 HQMAAK 519
Score = 44.3 bits (103), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 68/293 (23%), Positives = 114/293 (38%), Gaps = 10/293 (3%)
Query: 352 VKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAML 411
+KEAV L A P+ CT L+ + ++D + +++ ++ G +
Sbjct: 49 LKEAVGLLLEMEAAGCFPNSVTCTTLMDGLCKDGRMDEAM--ELLEAMKKKGFDADVVLY 106
Query: 412 NSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEA 471
+++ + G + ++ M G A+ S + L G+ EAN ++ M
Sbjct: 107 GTLISGFCNNGNLDRGKELFDEMLGKGISANVVTYSCLVHGLCRLGQWKEANTVLNAMAE 166
Query: 472 SGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAI 531
G + LI G C G A D MVEK G + ++L++ C + I
Sbjct: 167 HGIHPDVVTYTGLIDGLCKDGRATHAMDLLNLMVEK-GEEPSNVTYNVLLSGLCKEGLVI 225
Query: 532 DACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKD--HGFPPFVDPF- 588
DA K + + E K TY L+K L + +AL L M D + P V F
Sbjct: 226 DAFKILRMMI-EKGKKADVVTYNTLMKGLCDKGKVDEALKLFNSMFDNENCLEPNVFTFN 284
Query: 589 --IKYVSKSGTSDDAIAFLKGMTSK-RFPSMSVVLCLFAAFFQARRHSEAQDL 638
I + K G A+ + M K ++ L +A + EA +L
Sbjct: 285 MLIGGLCKEGRLTKAVKIHRKMVKKGSCGNLVTYNMLLGGCLKAGKIKEAMEL 337
Score = 44.3 bits (103), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 65/281 (23%), Positives = 108/281 (38%), Gaps = 36/281 (12%)
Query: 297 VKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAV 356
V D SYN + + L + + +L EM + G TC ++ + + EA+
Sbjct: 29 VSPDIVSYNTLINGLCKAKKLKEAVGLLLEMEAAGCFPNSVTCTTLMDGLCKDGRMDEAM 88
Query: 357 DLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNV-----LTDAML 411
+L E AM K + D+ L+ ++ F NGN+ L D ML
Sbjct: 89 ELLE-AMKKKGFDA-----------------DVVLYGTLISGFCNNGNLDRGKELFDEML 130
Query: 412 NSVLKA-----------LISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKD 460
+ A L +G+ E N +L AM E G + + L G+
Sbjct: 131 GKGISANVVTYSCLVHGLCRLGQWKEANTVLNAMAEHGIHPDVVTYTGLIDGLCKDGRAT 190
Query: 461 EANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLL 520
A + ++ M G + + + L+ G C G + A + M+EK G + L
Sbjct: 191 HAMDLLNLMVEKGEEPSNVTYNVLLSGLCKEGLVIDAFKILRMMIEK-GKKADVVTYNTL 249
Query: 521 VNTYCSKNRAIDACKFVHNCV-REYDLKPWHTTYEELIKNL 560
+ C K + +A K ++ E L+P T+ LI L
Sbjct: 250 MKGLCDKGKVDEALKLFNSMFDNENCLEPNVFTFNMLIGGL 290
Score = 42.0 bits (97), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 84/397 (21%), Positives = 164/397 (41%), Gaps = 50/397 (12%)
Query: 175 GVHGLVQEFWGLVDVMKKKGYGV-ASHVRNKMTEKFEKEGLESDLEKLKGIFATGSIDNS 233
G+H V + GL+D + K G A + N M EK E+ + L G+ G + ++
Sbjct: 168 GIHPDVVTYTGLIDGLCKDGRATHAMDLLNLMVEKGEEPSNVTYNVLLSGLCKEGLVIDA 227
Query: 234 IEKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEE 293
+ + I K ++D+ VT+ N L+K + DK G + +F +
Sbjct: 228 FKILRMMIEKGKKADV-------------VTY-NTLMKGLCDK-GKVDEALKLFNSMFDN 272
Query: 294 SGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVK 353
++ + ++N + L +E + + K+ +M KG + T +LG + +K
Sbjct: 273 ENCLEPNVFTFNMLIGGLCKEGRLTKAVKIHRKMVKKGSCGNLVTYNMLLGGCLKAGKIK 332
Query: 354 EAVDLYEFAMACKNKPSVNCCTFL------LRKIVVSKQL--DMR-------------LF 392
EA++L++ + P+ + L +R + ++K L +MR L
Sbjct: 333 EAMELWKQVLDLGFVPNSFTYSILIDGFCKMRMLNIAKGLFCEMRTHGLNPALFDYNTLM 392
Query: 393 SKVVR---------VFRENGNVLTDAML---NSVLKALISVGRMGECNKILKAMEEGGFI 440
+ + + +F+E GN + + N+++ + G ++ M E G
Sbjct: 393 ASLCKEGSLEQAKSLFQEMGNANCEPDIISFNTMIDGTLKAGDFQFVKELQMKMVEMGLR 452
Query: 441 ASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADC 500
+ S + RLS G+ DEA ++ M ASG ++ SL+KG GD + +
Sbjct: 453 PDALTFSTLINRLSKLGELDEAKSALERMVASGFTPDALVYDSLLKGLSSKGDTTEIINL 512
Query: 501 FQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFV 537
+M K GT + ++ C + +D + +
Sbjct: 513 LHQMAAK-GTVLDRKIVSTILTCLCHSIQEVDVMELL 548
>gi|449463418|ref|XP_004149431.1| PREDICTED: pentatricopeptide repeat-containing protein At1g77360,
mitochondrial-like [Cucumis sativus]
gi|449499065|ref|XP_004160711.1| PREDICTED: pentatricopeptide repeat-containing protein At1g77360,
mitochondrial-like [Cucumis sativus]
Length = 439
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 90/398 (22%), Positives = 161/398 (40%), Gaps = 23/398 (5%)
Query: 254 VERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGR 313
+E L + S ++ + V+ + + A FF WA + H +Y++M L +
Sbjct: 9 LETALDQTGIRISPEIAEPVLRRFENAGMLAYRFFEWASKQRNYVHSVRAYHSMIESLAK 68
Query: 314 EDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNC 373
W +++ MR+K + +E ++ +++ V+EAV + KP+V
Sbjct: 69 IRQYQMVWDLVNAMRNKEI-LNVEAFCIIMRKYARAQKVEEAVYTFNVMEKYNMKPNVAA 127
Query: 374 CTFLLRKIVVSKQLDMRLFSKVVRVFRE-NGNVLTDAMLNSVLKALISVGR---MGECNK 429
LL + SK + K +F + D+ S+L + GR + + +
Sbjct: 128 FNGLLSALCKSKNV-----RKAQEIFDNMKDQFVPDSKTYSIL--IEGWGRAPNLPKARE 180
Query: 430 ILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHC 489
I + M + G I S + L AG+ DEA E + M+ + ++ L+ +
Sbjct: 181 IYREMIDSGCIPDEVTYSIMVDVLCKAGRVDEAVEIVKEMDYNNCKPSSFIYSVLVHTYG 240
Query: 490 VAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPW 549
V ++ A F +M E+ G A + L++ +C N+ K V+ +++ DLK
Sbjct: 241 VENRIEDAVSTFLEM-ERNGVMADVAAYNALISAFCKANKM----KNVYRVLKDMDLKGV 295
Query: 550 HTTYE--ELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPF---IKYVSKSGTSDDAIAF 604
+ +I N L+ RG D + P VD + IK D A+
Sbjct: 296 NPNSRTCNIIINSLIGRGETDEAFKIFRRMIKVCEPDVDSYTMIIKMFCGRKELDMALKI 355
Query: 605 LKGMTSKRF-PSMSVVLCLFAAFFQARRHSEAQDLLSK 641
K M K+F PSM L Q ++A LL +
Sbjct: 356 WKYMKKKQFVPSMHTFSVLINGLCQIGNATQACVLLEE 393
Score = 42.4 bits (98), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 87/437 (19%), Positives = 169/437 (38%), Gaps = 42/437 (9%)
Query: 121 LELSGVVFTHEMVLKVLKNLESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLV 180
L+ +G+ + E+ VL+ E++ A RFF W ++ + S + Y+ M+ +
Sbjct: 13 LDQTGIRISPEIAEPVLRRFENAGMLAYRFFEWASKQRNYVHSVRAYHSMIESLAKIRQY 72
Query: 181 QEFWGLVDVMKKK-------------GYGVASHVRNKMT--EKFEKEGLESDLEKLKGIF 225
Q W LV+ M+ K Y A V + EK ++ ++ G+
Sbjct: 73 QMVWDLVNAMRNKEILNVEAFCIIMRKYARAQKVEEAVYTFNVMEKYNMKPNVAAFNGLL 132
Query: 226 ATGSIDNSIEKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPK--K 283
+ ++ K +I+ D+++ Q + T+S +++ G P K
Sbjct: 133 SALCKSKNVRKA---------QEIF-DNMKDQFVPDSKTYS-----ILIEGWGRAPNLPK 177
Query: 284 ALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVL 343
A +R +SG + DE +Y+ M VL + +D +++ EM + ++
Sbjct: 178 AREIYREMIDSGCIP-DEVTYSIMVDVLCKAGRVDEAVEIVKEMDYNNCKPSSFIYSVLV 236
Query: 344 GRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENG 403
+ N +++AV F +N + + K M+ +V++ G
Sbjct: 237 HTYGVENRIEDAVS--TFLEMERNGVMADVAAYNALISAFCKANKMKNVYRVLKDMDLKG 294
Query: 404 NVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKK--DE 461
N ++ +LI G E KI + M + + ++ S G+K D
Sbjct: 295 VNPNSRTCNIIINSLIGRGETDEAFKIFRRMIK---VCEPDVDSYTMIIKMFCGRKELDM 351
Query: 462 ANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLV 521
A + +M+ + LI G C G+ +A ++M+EK G +G L
Sbjct: 352 ALKIWKYMKKKQFVPSMHTFSVLINGLCQIGNATQACVLLEEMIEK-GIRPSGATFGRLR 410
Query: 522 NTYCSKNRAIDACKFVH 538
+ + R D KF+
Sbjct: 411 HLLIKEGRK-DVLKFLQ 426
>gi|359473479|ref|XP_002267299.2| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
repeat-containing protein At1g13630-like [Vitis
vinifera]
Length = 829
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 75/350 (21%), Positives = 136/350 (38%), Gaps = 44/350 (12%)
Query: 303 SYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFA 362
+Y + S L + ID +L EM G + ++ T ++ +R V+EA++LYE
Sbjct: 412 TYTVLLSSLCKSGRIDEAVILLHEMEVIGLKPDLLTYSVLIHGLCKRGAVEEAIELYEEM 471
Query: 363 MACKNKPSVNCCTFLLRKIVVSKQLD--MRLFSKVVRVFRENGNVLTDAMLNSVLKALIS 420
+ + P+ C+ ++ + + F V + +L + M++ K
Sbjct: 472 CSKRIYPNSFVCSAIISGLFEKGAISEAQMYFDSVTKSDVAEEIILYNIMIDGYAK---- 527
Query: 421 VGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKM 480
+G +GE + K + E G + + + + GK EA + +D ++ G
Sbjct: 528 LGNIGEAVRSYKQIIEKGISPTIVTFNSLIYGFCKKGKLAEAVKLLDTIKVHGLVPTSVT 587
Query: 481 WVSLIKGHCVAGDLDKAADCFQKM------------------VEKEGTSHAG-------Y 515
+ +L+ G+C GD+ D +M + KEG H Y
Sbjct: 588 YTTLMNGYCEEGDMHSMFDMLHEMEAKAIKPTQITYTVVVKGLCKEGRLHESVQLLKYMY 647
Query: 516 AIDL---------LVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGF 566
A L ++ ++C + A + +HN + ++ L+P TY LI L V
Sbjct: 648 ARGLFPDQITYNTVIQSFCKAHDLQKAFQ-LHNQMLQHSLQPSPVTYNVLINGLCVYGNL 706
Query: 567 KDALSLLCLMKDHGF---PPFVDPFIKYVSKSGTSDDAIAFLKGMTSKRF 613
KDA LL ++D IK G +A+ F M + F
Sbjct: 707 KDADRLLVTLQDQSIRLTKVAYTTIIKAHCAKGDVQNALVFFHQMVERGF 756
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 79/364 (21%), Positives = 155/364 (42%), Gaps = 15/364 (4%)
Query: 282 KKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVK 341
++AL F E G V+ D +YN +A+ I WKV+ M G ++ T
Sbjct: 322 EEALEFTNDMENHG-VEPDIVTYNILANGFRILGLISGAWKVVQRMLLNGLNPDLVTYTI 380
Query: 342 VLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLD-MRLFSKVVRVFR 400
++ + ++E+ L E ++ K S+ T LL + S ++D + + V
Sbjct: 381 LICGHCQMGNIEESFKLKEKMLSQGLKLSIVTYTVLLSSLCKSGRIDEAVILLHEMEVIG 440
Query: 401 ENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKD 460
++LT ++L + L G + E ++ + M +S + S I L G
Sbjct: 441 LKPDLLTYSVL---IHGLCKRGAVEEAIELYEEMCSKRIYPNSFVCSAIISGLFEKGAIS 497
Query: 461 EANEFMDHMEASGSDVGDK--MWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAID 518
EA + D + SDV ++ ++ +I G+ G++ +A +++++EK G S +
Sbjct: 498 EAQMYFD--SVTKSDVAEEIILYNIMIDGYAKLGNIGEAVRSYKQIIEK-GISPTIVTFN 554
Query: 519 LLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKD 578
L+ +C K + +A K + + ++ + L P TY L+ + +L M+
Sbjct: 555 SLIYGFCKKGKLAEAVKLL-DTIKVHGLVPTSVTYTTLMNGYCEEGDMHSMFDMLHEMEA 613
Query: 579 HGFPPFVDPF---IKYVSKSGTSDDAIAFLKGMTSK-RFPSMSVVLCLFAAFFQARRHSE 634
P + +K + K G +++ LK M ++ FP + +F +A +
Sbjct: 614 KAIKPTQITYTVVVKGLCKEGRLHESVQLLKYMYARGLFPDQITYNTVIQSFCKAHDLQK 673
Query: 635 AQDL 638
A L
Sbjct: 674 AFQL 677
Score = 49.3 bits (116), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 66/177 (37%), Gaps = 2/177 (1%)
Query: 407 TDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFM 466
T V+K L GR+ E ++LK M G + + A +A +
Sbjct: 619 TQITYTVVVKGLCKEGRLHESVQLLKYMYARGLFPDQITYNTVIQSFCKAHDLQKAFQLH 678
Query: 467 DHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCS 526
+ M + LI G CV G+L K AD ++ + A ++ +C+
Sbjct: 679 NQMLQHSLQPSPVTYNVLINGLCVYGNL-KDADRLLVTLQDQSIRLTKVAYTTIIKAHCA 737
Query: 527 KNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPP 583
K +A F H V E + Y +I L + DA C+M HG PP
Sbjct: 738 KGDVQNALVFFHQMV-ERGFEVSIRDYSAVINRLCKRNLITDAKFFFCMMLTHGIPP 793
>gi|302770783|ref|XP_002968810.1| hypothetical protein SELMODRAFT_91015 [Selaginella moellendorffii]
gi|300163315|gb|EFJ29926.1| hypothetical protein SELMODRAFT_91015 [Selaginella moellendorffii]
Length = 545
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 75/357 (21%), Positives = 136/357 (38%), Gaps = 44/357 (12%)
Query: 286 IFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGR 345
+F A E GF+ D +Y ++ L + ++ + EMR++GYE + T ++
Sbjct: 208 VFDDEAVERGFIP-DAVTYTSIIDGLCKLGRVEEGCERFHEMRNRGYEPDAVTYAALIDG 266
Query: 346 FSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNV 405
F + M+ +A +V R ++G V
Sbjct: 267 FMKAKMIPKA-------------------------------------HRVYRQMLQSGTV 289
Query: 406 LTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEF 465
++ N +L L GR+ E AMEE G +A+ S + S G A E
Sbjct: 290 VSTVTYNIILDGLCKAGRVAEAYATFLAMEERGCVATVVTYSALMDGFCSEGNVSAAVEL 349
Query: 466 MDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYC 525
M G + + +I+G C AG L KA F+K++++ Y + ++ C
Sbjct: 350 FRRMLDRGCEPNLVSYNIIIRGLCRAGKLAKAYFYFEKLLQRRLCPDV-YTFNAFLHGLC 408
Query: 526 SKNRAI-DACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPF 584
+ + D + + V + P +Y L+ + G + AL + M G P
Sbjct: 409 QRLDTVSDGVELFESMVSQ-GTSPNLHSYSILMDGICRAGGLEVALEIFREMVSRGVAPD 467
Query: 585 V---DPFIKYVSKSGTSDDAIAFLKGMTSKRFPSMSVVLCLFAAFFQARRHSEAQDL 638
V + I+++ +G D+A+ + + + P L + R EA+ L
Sbjct: 468 VVVFNTLIRWLCIAGRVDEALEVFRELERRSAPDAWSYWSLLDGLSRCERMEEARLL 524
Score = 50.1 bits (118), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 73/344 (21%), Positives = 138/344 (40%), Gaps = 19/344 (5%)
Query: 303 SYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFA 362
+Y A+ L + +D VL++M KG ++T V+ S+ V+EA ++
Sbjct: 79 TYTALVDGLLKAGRLDEAMAVLEQMVEKGNSPTLKTYTVVIDGLSKAGRVEEARRIFVDM 138
Query: 363 MACKNKPSVNCCTFLLRKIVVS-KQLDMRLFSKVVRVFRENGNVLTDAM-LNSVLKALIS 420
+ +P T L++ + S K + K + + + D + S++ L
Sbjct: 139 LGNGCRPDAFVYTALIKGLCKSGKPEEAYALYKEANARKHHATAVPDVVTYTSLIDGLCK 198
Query: 421 VGRMGECNKIL--KAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGD 478
GR+ E ++ +A+E GFI + + I L G+ +E E M G +
Sbjct: 199 AGRILEARQVFDDEAVER-GFIPDAVTYTSIIDGLCKLGRVEEGCERFHEMRNRGYEPDA 257
Query: 479 KMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDA-CKFV 537
+ +LI G A + KA +++M++ GT + +++++ C R +A F+
Sbjct: 258 VTYAALIDGFMKAKMIPKAHRVYRQMLQS-GTVVSTVTYNIILDGLCKAGRVAEAYATFL 316
Query: 538 HNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPF---IKYVSK 594
+ E TY L+ + A+ L M D G P + + I+ + +
Sbjct: 317 A--MEERGCVATVVTYSALMDGFCSEGNVSAAVELFRRMLDRGCEPNLVSYNIIIRGLCR 374
Query: 595 SGTSDDAIAFLKGMTSKRFPSMSVVLCLFAAFFQARRHSEAQDL 638
+G A + + + +R LC F A H Q L
Sbjct: 375 AGKLAKAYFYFEKLLQRR-------LCPDVYTFNAFLHGLCQRL 411
Score = 48.9 bits (115), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 43/196 (21%), Positives = 82/196 (41%), Gaps = 14/196 (7%)
Query: 407 TDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFM 466
T +++ L+ GR+ E +L+ M E G + + + LS AG+ +EA
Sbjct: 76 TTVTYTALVDGLLKAGRLDEAMAVLEQMVEKGNSPTLKTYTVVIDGLSKAGRVEEARRIF 135
Query: 467 DHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDL-----LV 521
M +G ++ +LIKG C +G ++A +++ ++ HA D+ L+
Sbjct: 136 VDMLGNGCRPDAFVYTALIKGLCKSGKPEEAYALYKEANARK--HHATAVPDVVTYTSLI 193
Query: 522 NTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGF 581
+ C R ++A + + E P TY +I L ++ M++ G+
Sbjct: 194 DGLCKAGRILEARQVFDDEAVERGFIPDAVTYTSIIDGLCKLGRVEEGCERFHEMRNRGY 253
Query: 582 PP-------FVDPFIK 590
P +D F+K
Sbjct: 254 EPDAVTYAALIDGFMK 269
>gi|357442157|ref|XP_003591356.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355480404|gb|AES61607.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 518
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 84/377 (22%), Positives = 145/377 (38%), Gaps = 19/377 (5%)
Query: 252 DDVERQLRDLNVTFSNDLVKFVVDKL---GDEPKKALIFFRWAEESGFVKHDESSYNAMA 308
+ +++ L+ + SN+L+ V+ ++ P + L FFR+ H S + M
Sbjct: 42 ETLKQSLKSTQIFLSNELIDQVLKRVRFGHANPNQTLEFFRYTGRRKGFYHTAYSLDTML 101
Query: 309 SVLGREDCIDRFWKVLDEMRSKGYE-MEMETCVKVLGRFSERNMVKEAVDLYEFAMACKN 367
+LGR D W++L E R K + T + VLGR ++ V++ V+ +
Sbjct: 102 YILGRSRMFDHVWELLIEARRKDQNVITPRTVMVVLGRVAKVCSVRQTVETFRKFKKIVP 161
Query: 368 KPSVNCCTFLLRKIVVSKQL-DMR-LFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMG 425
VNC LLR + K + D R ++ + FR N N +L +V
Sbjct: 162 DYGVNCFNALLRTLCQEKSMTDARNVYHSLKHNFRPNLQT-----FNILLSGWKNV---E 213
Query: 426 ECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLI 485
+ + M+E G + + + ++A + D M + S+I
Sbjct: 214 DAELFVNEMKEMGVEPDVVTYNSLVDVYCKGREIEKAYKVFDEMREKDLSPDVITYTSVI 273
Query: 486 KGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYD 545
G + G DKA D ++M E G A + + YC R A + V V +
Sbjct: 274 GGLGLVGQPDKARDVLKEMKEY-GVYPDVPAYNAAIRNYCIAKRLGIAFELVDEMVNK-G 331
Query: 546 LKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDP---FIKYVSKSGTSDDAI 602
L P TTY + + + +L M G P+ I+ + + A+
Sbjct: 332 LSPNATTYNLFFRVFYWSNDLQSSWNLYKRMMGEGCLPYTQSCMFLIRLFKRHEKMEMAL 391
Query: 603 AFLKGMTSKRFPSMSVV 619
M K F S ++V
Sbjct: 392 QLWGEMVEKGFGSYTLV 408
Score = 40.0 bits (92), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 59/299 (19%), Positives = 119/299 (39%), Gaps = 15/299 (5%)
Query: 100 DFTVVSDIFYKFSDVNDISKQLELSGVVFTHEMVLKVLKNL---ESSPDEARRFFNWVLE 156
D V I S + + L+ + + ++E++ +VLK + ++P++ FF +
Sbjct: 27 DVHKVYTILTTTSSPETLKQSLKSTQIFLSNELIDQVLKRVRFGHANPNQTLEFFRYTGR 86
Query: 157 KESERLSSKTYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASH-----VRNKMTEKFEK 211
++ ++ + + ML I+G + W L+ ++K V + V ++ +
Sbjct: 87 RKGFYHTAYSLDTMLYILGRSRMFDHVWELLIEARRKDQNVITPRTVMVVLGRVAKVCSV 146
Query: 212 EGLESDLEKLKGIFATGSIDNSIEKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVK 271
K K I + N + +C+ + D L F +L
Sbjct: 147 RQTVETFRKFKKIVPDYGV-NCFNALLRTLCQ----EKSMTDARNVYHSLKHNFRPNLQT 201
Query: 272 FVVDKLG-DEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSK 330
F + G + A +F +E G V+ D +YN++ V + I++ +KV DEMR K
Sbjct: 202 FNILLSGWKNVEDAELFVNEMKEMG-VEPDVVTYNSLVDVYCKGREIEKAYKVFDEMREK 260
Query: 331 GYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDM 389
++ T V+G +A D+ + P V +R ++K+L +
Sbjct: 261 DLSPDVITYTSVIGGLGLVGQPDKARDVLKEMKEYGVYPDVPAYNAAIRNYCIAKRLGI 319
>gi|115446945|ref|NP_001047252.1| Os02g0582300 [Oryza sativa Japonica Group]
gi|50253069|dbj|BAD29317.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|113536783|dbj|BAF09166.1| Os02g0582300 [Oryza sativa Japonica Group]
Length = 845
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 66/287 (22%), Positives = 120/287 (41%), Gaps = 9/287 (3%)
Query: 282 KKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVK 341
++ L+ R +E G+ + +Y A+ RE ++L EM KG + TC
Sbjct: 271 EEGLLMLRRMKELGW-RPSTRAYAAVVDFRCRERKAKEAEEMLQEMFEKGLAPCVVTCTA 329
Query: 342 VLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLD--MRLFSKVVRVF 399
V+ + + + +A+ + E KP+V L++ ++ M L +K+ R
Sbjct: 330 VINAYCKEGRMSDALRVLELMKLRGCKPNVWTYNALVQGFCNEGKVHKAMTLLNKM-RAC 388
Query: 400 RENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKK 459
N + +T N +++ G + ++L+ ME G IA + + L G+
Sbjct: 389 GVNPDAVT---YNLLIRGQCIDGHIESAFRLLRLMEGDGLIADQYTYNALINALCKDGRT 445
Query: 460 DEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDL 519
D+A D +E G + SLI G C +G D A +KMV G + Y
Sbjct: 446 DQACSLFDSLETRGIKPNAVTFNSLINGLCKSGKADIAWKFLEKMVSA-GCTPDTYTYSS 504
Query: 520 LVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGF 566
+ C + + F+ +++ D+KP Y +I LL +R +
Sbjct: 505 FIEHLCKMKGSQEGLSFIGEMLQK-DVKPSTVNYTIVIHKLLKERNY 550
Score = 57.4 bits (137), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 76/362 (20%), Positives = 145/362 (40%), Gaps = 37/362 (10%)
Query: 283 KALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKV 342
+AL + SG+ + D ++N++ R + +D + D+M +G+ ++ + +
Sbjct: 171 RALRYLSLMVRSGW-RPDAYTFNSLIVGYCRTNQVDVARDLFDKMPLRGFAQDVVSYATL 229
Query: 343 LGRFSERNMVKEAV---------DLYEFAM----ACKNKPSVNCCTFLLRKIVVSKQLDM 389
+ E + EAV D++ +A C + L R + +
Sbjct: 230 IEGLCEAGRIDEAVELFGEMDQPDMHMYAALVKGLCNAERGEEGLLMLRRMKELGWRPST 289
Query: 390 RLFSKVV------RVFRENGNVLTD----------AMLNSVLKALISVGRMGECNKILKA 433
R ++ VV R +E +L + +V+ A GRM + ++L+
Sbjct: 290 RAYAAVVDFRCRERKAKEAEEMLQEMFEKGLAPCVVTCTAVINAYCKEGRMSDALRVLEL 349
Query: 434 MEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGD 493
M+ G + + + + GK +A ++ M A G + + LI+G C+ G
Sbjct: 350 MKLRGCKPNVWTYNALVQGFCNEGKVHKAMTLLNKMRACGVNPDAVTYNLLIRGQCIDGH 409
Query: 494 LDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTY 553
++ A +++E +G Y + L+N C R AC + + +KP T+
Sbjct: 410 IESAFRLL-RLMEGDGLIADQYTYNALINALCKDGRTDQACSLF-DSLETRGIKPNAVTF 467
Query: 554 EELIKNLLVQRGFKD-ALSLLCLMKDHGFPP---FVDPFIKYVSKSGTSDDAIAFLKGMT 609
LI N L + G D A L M G P FI+++ K S + ++F+ M
Sbjct: 468 NSLI-NGLCKSGKADIAWKFLEKMVSAGCTPDTYTYSSFIEHLCKMKGSQEGLSFIGEML 526
Query: 610 SK 611
K
Sbjct: 527 QK 528
Score = 47.8 bits (112), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 57/259 (22%), Positives = 102/259 (39%), Gaps = 13/259 (5%)
Query: 387 LDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMK 446
L +RLF+ + R T N+V+++L + + L M G+ +
Sbjct: 135 LALRLFA---HMHRHAPPAPTAPTYNAVIRSLCRRADLARALRYLSLMVRSGWRPDAYTF 191
Query: 447 SKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVE 506
+ + + D A + D M G + +LI+G C AG +D+A + F +M +
Sbjct: 192 NSLIVGYCRTNQVDVARDLFDKMPLRGFAQDVVSYATLIEGLCEAGRIDEAVELFGEMDQ 251
Query: 507 KEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGF 566
+ +A LV C+ R + + ++E +P Y ++ +R
Sbjct: 252 PDMHMYAA-----LVKGLCNAERGEEGLLMLRR-MKELGWRPSTRAYAAVVDFRCRERKA 305
Query: 567 KDALSLLCLMKDHGFPPFV---DPFIKYVSKSGTSDDAIAFLKGMTSKRF-PSMSVVLCL 622
K+A +L M + G P V I K G DA+ L+ M + P++ L
Sbjct: 306 KEAEEMLQEMFEKGLAPCVVTCTAVINAYCKEGRMSDALRVLELMKLRGCKPNVWTYNAL 365
Query: 623 FAAFFQARRHSEAQDLLSK 641
F + +A LL+K
Sbjct: 366 VQGFCNEGKVHKAMTLLNK 384
Score = 43.1 bits (100), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 65/314 (20%), Positives = 118/314 (37%), Gaps = 33/314 (10%)
Query: 293 ESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMV 352
E+ +K + ++N++ + L + D WK L++M S G + T + +
Sbjct: 456 ETRGIKPNAVTFNSLINGLCKSGKADIAWKFLEKMVSAGCTPDTYTYSSFIEHLCKMKGS 515
Query: 353 KEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRE------NGNVL 406
+E + + KPS T IV+ K L R + V R + E N +V+
Sbjct: 516 QEGLSFIGEMLQKDVKPSTVNYT-----IVIHKLLKERNYGLVARTWGEMVSSGCNPDVV 570
Query: 407 TDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFM 466
T + ++A GR+ E +L M + G + + + +S G+ D A +
Sbjct: 571 T---YTTSMRAYCIEGRLNEAENVLMEMSKNGVTVDTMAYNTLMDGHASIGQTDHAVSIL 627
Query: 467 DHMEASGSDVGDKMWVSLIK-----------------GHCVAGDLDKAADCFQKMVEKEG 509
M + S + L++ G A +L F M + E
Sbjct: 628 KQMTSVASVPNQFTYFILLRHLVRMRLVEDVLPLTPAGVWKAIELTDVFGLFDVMKKNEF 687
Query: 510 TSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDA 569
++G +L + R +A V + ++E + Y L+ + + DA
Sbjct: 688 LPNSGTYSSIL-EGFSEDGRTEEATSLV-SLMKEDSISLNEDIYTALVTCFCKSKRYLDA 745
Query: 570 LSLLCLMKDHGFPP 583
L+C M HGF P
Sbjct: 746 WVLVCSMIQHGFIP 759
>gi|356548144|ref|XP_003542463.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
chloroplastic-like [Glycine max]
Length = 756
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 89/378 (23%), Positives = 150/378 (39%), Gaps = 50/378 (13%)
Query: 282 KKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVK 341
K+ L + E GF + D +YN++ S L + ID ++L M S+ E T
Sbjct: 319 KQGLEMMDFMLEKGF-ELDVYTYNSLISGLCKLGEIDEAVEILHHMVSRDCEPNTVTYNT 377
Query: 342 VLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTF--LLRKIVVS--KQLDMRLFSKVV- 396
++G + N V+ A +L + P V CTF L++ + ++ +++ M LF ++
Sbjct: 378 LIGTLCKENHVEAATELARVLTSKGVLPDV--CTFNSLIQGLCLTSNREIAMELFEEMKE 435
Query: 397 --------------------RVFRENGNVLTDAML----------NSVLKALISVGRMGE 426
R +E +L + L N+++ L R+G+
Sbjct: 436 KGCDPDEFTYSILIESLCSERRLKEALMLLKEMELSGCARNVVVYNTLIDGLCKNNRVGD 495
Query: 427 CNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIK 486
I ME G SS + + L + + +EA + MD M G + +++K
Sbjct: 496 AEDIFDQMEMLGVSRSSVTYNTLINGLCKSKRVEEAAQLMDQMIMEGLKPDKFTYTTMLK 555
Query: 487 GHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNC-VREYD 545
C GD+ +AAD Q M G L+ C R A K + + ++
Sbjct: 556 YFCQQGDIKRAADIVQNMT-LNGCEPDIVTYGTLIGGLCKAGRVDVASKLLRSVQMKGMV 614
Query: 546 LKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDP----FIKYVSKSGTSDDA 601
L P Y +I+ L ++ K+A+ L M + G PP V F + G +A
Sbjct: 615 LTPQ--AYNPVIQALCKRKRTKEAMRLFREMMEKGDPPDVITYKIVFRGLCNGGGPIQEA 672
Query: 602 IAFLKGMTSK----RFPS 615
+ F M K FPS
Sbjct: 673 VDFTVEMLEKGILPEFPS 690
Score = 60.1 bits (144), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 63/297 (21%), Positives = 124/297 (41%), Gaps = 6/297 (2%)
Query: 287 FFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRF 346
F E VK D YN S+L + + + + +M + ++ T ++
Sbjct: 150 LFLLMERDFAVKPDTRFYNVALSLLVKANKLKLVETLHSKMVADAVPPDVSTFNILIRAL 209
Query: 347 SERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVL 406
+ + ++ A+ + E +P T L++ + ++ D+ ++ + E+G L
Sbjct: 210 CKAHQLRPAILMLEDMPNYGLRPDEKTFTTLMQGFI--EEADVEGALRIKELMVESGCEL 267
Query: 407 TDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFM 466
T +N ++ L GR+ E + + EE GF + + L G + E M
Sbjct: 268 TSVSVNVLVNGLCKEGRIEEALRFI--YEEEGFCPDQVTFNALVNGLCRTGHIKQGLEMM 325
Query: 467 DHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCS 526
D M G ++ + SLI G C G++D+A + MV ++ + + L+ T C
Sbjct: 326 DFMLEKGFELDVYTYNSLISGLCKLGEIDEAVEILHHMVSRDCEPNT-VTYNTLIGTLCK 384
Query: 527 KNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPP 583
+N ++A + + + P T+ LI+ L + + A+ L MK+ G P
Sbjct: 385 ENH-VEAATELARVLTSKGVLPDVCTFNSLIQGLCLTSNREIAMELFEEMKEKGCDP 440
Score = 46.2 bits (108), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 52/216 (24%), Positives = 95/216 (43%), Gaps = 12/216 (5%)
Query: 262 NVTFSNDLVKFVV--DKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDR 319
NV N L+ + +++GD A F E G V +YN + + L + ++
Sbjct: 476 NVVVYNTLIDGLCKNNRVGD----AEDIFDQMEMLG-VSRSSVTYNTLINGLCKSKRVEE 530
Query: 320 FWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLR 379
+++D+M +G + + T +L F ++ +K A D+ + +P + L+
Sbjct: 531 AAQLMDQMIMEGLKPDKFTYTTMLKYFCQQGDIKRAADIVQNMTLNGCEPDIVTYGTLIG 590
Query: 380 KIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGF 439
+ + ++D+ SK++R + G VLT N V++AL R E ++ + M E G
Sbjct: 591 GLCKAGRVDVA--SKLLRSVQMKGMVLTPQAYNPVIQALCKRKRTKEAMRLFREMMEKG- 647
Query: 440 IASSNMKSKIAFR--LSSAGKKDEANEFMDHMEASG 473
+ KI FR + G EA +F M G
Sbjct: 648 DPPDVITYKIVFRGLCNGGGPIQEAVDFTVEMLEKG 683
>gi|242069905|ref|XP_002450229.1| hypothetical protein SORBIDRAFT_05g002220 [Sorghum bicolor]
gi|241936072|gb|EES09217.1| hypothetical protein SORBIDRAFT_05g002220 [Sorghum bicolor]
Length = 797
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 56/240 (23%), Positives = 100/240 (41%), Gaps = 6/240 (2%)
Query: 410 MLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHM 469
+ NS++ L +V + + + M G + I L + G+ +A +D M
Sbjct: 450 VFNSLVYGLCTVDKWEKAKEFYFEMLNQGIRPDVVFFNTILCNLCTKGQVMKAQRLIDLM 509
Query: 470 EASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNR 529
E G+ G + +LI GHC+ G +D+AA M+ G + + L++ YC R
Sbjct: 510 ERVGTRPGVISYTTLIGGHCLVGRIDEAAKSLDVMLSV-GLKPDEWTYNTLLHGYCRAGR 568
Query: 530 AIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFV---D 586
DA +R + P TY ++ L R F +A L M G + +
Sbjct: 569 IDDAYGVFREMLRN-GITPGVVTYSTILHGLFTTRRFSEAKELYLNMITSGKQWNIWIYN 627
Query: 587 PFIKYVSKSGTSDDAIAFLKGMTSKRFP-SMSVVLCLFAAFFQARRHSEAQDLLSKCPRY 645
+ +SK+ D+A + + SK F ++ + A F++ R+ +A L + Y
Sbjct: 628 IILNGLSKNNCVDEAFKLFQSLCSKDFQLEITTFNIMIGALFKSGRNEDAMHLFATISSY 687
Score = 40.0 bits (92), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 76/385 (19%), Positives = 143/385 (37%), Gaps = 51/385 (13%)
Query: 297 VKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAV 356
++ + +Y + L + +DR V +M KG + + +T ++ + KE V
Sbjct: 234 IQPNVVTYTTVIDGLCKAQVVDRAEGVFQQMIDKGVKPDNDTYNCLIHGYLSIGKWKEVV 293
Query: 357 DLYEFAMACKNKPSVNCCTF--LLRKIVVSKQL-DMR-LFSKVVRVFRENGNVLTDAMLN 412
+ E A KP +C T+ LL + + + + R LF ++R G A+
Sbjct: 294 RMLEEMSAHGLKP--DCYTYGSLLNYLCNNGRCREARFLFDSMIR----KGIKPNVAIYG 347
Query: 413 SVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEAS 472
++ + G + E + +L M E G ++ + I + DEA + M+
Sbjct: 348 ILIHGYATKGALSEMHDLLNLMVENGLSPDHHIFNIIFTAYAKKAMIDEAMHIFNKMKQQ 407
Query: 473 GSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAID 532
G + +LI C G +D A F +M+ EG + + + LV C+ ++
Sbjct: 408 GLSPDVVNYGALIDALCKLGRVDDAVLKFNQMM-NEGVAPNIFVFNSLVYGLCTVDKWEK 466
Query: 533 ACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPFIKYV 592
A +F + + ++P + ++ NL + A L+ LM+ G P V + +
Sbjct: 467 AKEFYFEMLNQ-GIRPDVVFFNTILCNLCTKGQVMKAQRLIDLMERVGTRPGVISYTTLI 525
Query: 593 S--------------------------------------KSGTSDDAIAFLKGMTSKRF- 613
++G DDA + M
Sbjct: 526 GGHCLVGRIDEAAKSLDVMLSVGLKPDEWTYNTLLHGYCRAGRIDDAYGVFREMLRNGIT 585
Query: 614 PSMSVVLCLFAAFFQARRHSEAQDL 638
P + + F RR SEA++L
Sbjct: 586 PGVVTYSTILHGLFTTRRFSEAKEL 610
Score = 39.3 bits (90), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 51/228 (22%), Positives = 84/228 (36%), Gaps = 36/228 (15%)
Query: 297 VKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVL-GRFSERNMVKEA 355
+K DE +YN + R ID + V EM G + T +L G F+ R EA
Sbjct: 549 LKPDEWTYNTLLHGYCRAGRIDDAYGVFREMLRNGITPGVVTYSTILHGLFTTRRF-SEA 607
Query: 356 VDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNV---------- 405
+LY L I KQ ++ +++ ++ +N V
Sbjct: 608 KELY------------------LNMITSGKQWNIWIYNIILNGLSKNNCVDEAFKLFQSL 649
Query: 406 ------LTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKK 459
L N ++ AL GR + + + G + IA L G
Sbjct: 650 CSKDFQLEITTFNIMIGALFKSGRNEDAMHLFATISSYGLVPDVFTYCLIAENLIEEGYL 709
Query: 460 DEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEK 507
+E ++ ME SG+ +M +L++ GD+ +A K+ EK
Sbjct: 710 EEFDDLFSAMEKSGTTPNSRMLNALVRRLLHRGDITRAGAYLCKLDEK 757
>gi|147771990|emb|CAN69053.1| hypothetical protein VITISV_022963 [Vitis vinifera]
Length = 2021
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 86/403 (21%), Positives = 159/403 (39%), Gaps = 49/403 (12%)
Query: 298 KHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVD 357
+ D +++ + L E I + D+M +G++ + T ++ + A+
Sbjct: 132 QPDPTTFTTLIRGLCVEGKIGEALHLFDKMIDEGFQPNVVTYGTLINGLCKVGNTSAAIR 191
Query: 358 LYEFAMACKNKPSVNCCTFLLRKIVVSKQLD--MRLFSKVVRVFRENGNVLTDAMLN--S 413
L +P V T ++ + +Q+ LFS++V G ++ + S
Sbjct: 192 LLRSMEQGNCQPDVVIYTSIIDSLCKDRQVTEAFNLFSQMV------GQGISPDIFTYTS 245
Query: 414 VLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASG 473
++ AL ++ +L M + + S + L GK EA+E +D M G
Sbjct: 246 LVHALCNLCEWKHVTTLLNQMVNSKILPDVVIFSTVVDALCKEGKVTEAHEIVDMMIQRG 305
Query: 474 SDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDL-----LVNTYCSKN 528
+ + +L+ GHC+ ++D+A F MV K G+A D+ L+N YC K
Sbjct: 306 VEPDVVTYTTLMDGHCLQSEMDEAVKVFDMMVRK------GFAPDVISYTTLINGYC-KI 358
Query: 529 RAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPF 588
ID ++ + + P TY L+ L +DA++L M G P + +
Sbjct: 359 HKIDKAMYLFEEMCRKEWIPDTKTYNTLMYGLCHVGRLQDAIALFHEMVARGQMPDLVTY 418
Query: 589 ---IKYVSKSGTSDDAIAFLKGMTSKRF-PSMSVVLCLFAAFFQARRHSEAQDLLSK--- 641
+ + K+ ++A+A LK + + P + V + +A A+DL S
Sbjct: 419 SILLDSLCKNRHLEEAMALLKAIEASNLNPDIQVYNIIIDGMCRAGELEAARDLFSNLSS 478
Query: 642 -----------------CPRYVRNHADVLNLLYSKKSGGDSAP 667
C R + N A N L+ + G D +P
Sbjct: 479 KGLHPSVWTYNIMIHGLCKRGLLNEA---NKLFMEMDGNDCSP 518
Score = 48.5 bits (114), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 63/131 (48%), Gaps = 5/131 (3%)
Query: 515 YAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLC 574
Y +++L+N++C NR A + ++ +P TT+ LI+ L V+ +AL L
Sbjct: 101 YTLNILINSFCHLNRVGFAFSVLAKILK-LGHQPDPTTFTTLIRGLCVEGKIGEALHLFD 159
Query: 575 LMKDHGFPPFVDPF---IKYVSKSGTSDDAIAFLKGMTSKRF-PSMSVVLCLFAAFFQAR 630
M D GF P V + I + K G + AI L+ M P + + + + + R
Sbjct: 160 KMIDEGFQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPDVVIYTSIIDSLCKDR 219
Query: 631 RHSEAQDLLSK 641
+ +EA +L S+
Sbjct: 220 QVTEAFNLFSQ 230
>gi|224112321|ref|XP_002316152.1| predicted protein [Populus trichocarpa]
gi|222865192|gb|EEF02323.1| predicted protein [Populus trichocarpa]
Length = 785
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 102/470 (21%), Positives = 189/470 (40%), Gaps = 68/470 (14%)
Query: 239 SRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFV-VDKLGDEPKKALIFFRWAEESGFV 297
++I +VV+ WG ++E QL L F ++ V K+ +E L F+WA+ +
Sbjct: 94 AKIVEVVKRWKWGPELETQLDKLQ--FVPNMTHVVQALKIINESDALLSLFKWAKRQTWY 151
Query: 298 KHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETC--VKVLGRFSERNMVKEA 355
++ Y + L + D + DEM C +K +FS N V +
Sbjct: 152 VPNDECYVMLFDGLNQSRDFDGIQSLFDEM----------VCDSIKSATQFSAYNRVLKY 201
Query: 356 V---DLYEFAMACKNKPSVNCCTF------LLRKIVVSKQLDMRLFSKVVRVFRENGNVL 406
+ + E + C K + C +L K+ ++K L + F ++ L
Sbjct: 202 LAKAEKLEVSFCCFKKVQDSGCKIDTETYNILMKLFLNKGLPYKAF-EIYETMEAAHCSL 260
Query: 407 TDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFM 466
+ ++ +L GR+ K+ + M+E F S + S + + AG+ + + +
Sbjct: 261 DVSTYELMIPSLAKSGRLDAAFKLFQEMKERNFRPSLGIFSSLVDSMGKAGRLETSMKVY 320
Query: 467 DHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKM---------------------- 504
M+ G M+VSLI+ + AG LD A + +M
Sbjct: 321 MEMQGLGLRPSAIMYVSLIESYTKAGKLDAALRLWDEMKIAGFRPNFGLYTLIIESHAKS 380
Query: 505 ------------VEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTT 552
+EK G L+ + + + +DA ++N + L+P +T
Sbjct: 381 GKLDIAMSIFRDMEKAGFLPTPSTYSSLLEMHAASGQ-VDAAMKLYNSMTNAGLRPGLST 439
Query: 553 YEELIKNLLVQRGFKDALSLLCLMKDHGFPPFV---DPFIKYVSKSGTSDDAIAFLKGMT 609
Y L+ L ++ A +L MK GF V D + Y+ K G+ D ++ +L+ M+
Sbjct: 440 YTALLTLLAHKKLVDVAAKILLEMKAMGFSVDVSASDVLMVYI-KDGSVDLSLRWLRFMS 498
Query: 610 SKRFPSMSVVL-CLFAAFFQARRHSEAQDLLSKCPRYVRNHADVLNLLYS 658
S + + ++ LF + + + A+ LL YV + A V +LY+
Sbjct: 499 SSGIRTNNFIIRQLFESCMKNGLYESAKPLLET---YVNSAAKVDLILYT 545
>gi|296085006|emb|CBI28421.3| unnamed protein product [Vitis vinifera]
Length = 740
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 73/346 (21%), Positives = 139/346 (40%), Gaps = 8/346 (2%)
Query: 300 DESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLY 359
D +Y ++ R +D + V D M +G + T ++ V EA+D+
Sbjct: 232 DVFTYTSLILGHCRNRNLDLAFGVFDRMVKEGCDPNSVTYSTLINGLCNEGRVDEALDML 291
Query: 360 EFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALI 419
E + +P+V T+ L + ++V ++ G +++ L
Sbjct: 292 EEMIEKGIEPTVY--TYTLPITALCAIEHEEEAIELVARMKKRGCRPNVQTYTALISGLS 349
Query: 420 SVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDK 479
+G++ + M + G + ++ + + L G+ A + ME GS +
Sbjct: 350 RLGKLEVAIGLYHKMLKEGLVPNTVTYNALINELCVGGRFSTALKIFHWMEGHGSLANTQ 409
Query: 480 MWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHN 539
+ +IKG C+ GD++KA F+KM+ K G + L+N Y +K +A + + +
Sbjct: 410 TYNEIIKGLCLGGDIEKAMVLFEKML-KMGPLPTVVTYNTLINGYLTKGNVNNAARLL-D 467
Query: 540 CVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPFIKYV---SKSG 596
++E +P TY EL+ + A M + G P + + SK G
Sbjct: 468 LMKENGCEPDEWTYNELVSGFSKWGKLESASFYFQEMVECGLNPNPVSYTALIDGHSKDG 527
Query: 597 TSDDAIAFLKGMTSKRF-PSMSVVLCLFAAFFQARRHSEAQDLLSK 641
D A++ LK M P++ + + R SEA+ + K
Sbjct: 528 KVDIALSLLKRMEEMGCNPNVESYNAVINGLSKENRFSEAEKICDK 573
Score = 55.8 bits (133), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 78/380 (20%), Positives = 144/380 (37%), Gaps = 64/380 (16%)
Query: 225 FATGSIDNSIEKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKA 284
FA + + + SR+C ++ W E L+ L+ V +V + + +
Sbjct: 35 FAVPASREPFQAIVSRVCAILSRVQWKGSSE--LKQLSPQLKAHHVAEIV-AVHKDTESV 91
Query: 285 LIFFRWAEESGFVKHDESSYNAMASVLGR--------------------EDCIDRFWKVL 324
+ FF W + F KH+ + + +M + L R E+ I R L
Sbjct: 92 IQFFYWISKRPFYKHNMNCFISMLNRLVRDRVFAPADHIRILMIKACRNEEEIRRVADFL 151
Query: 325 DEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVS 384
+E+ G+ + +C +L + ++ MV+ A +LY+ + +PS
Sbjct: 152 NEISGMGFGFSLYSCNTLLIQLAKFEMVEGARNLYKQMLNSGIQPS-------------- 197
Query: 385 KQLDMRLFSKVVRVFRENGNVL-TDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASS 443
+ F+ ++ + + G V + +L+ + + +S + IL G +
Sbjct: 198 ----LLTFNTLINILSKKGKVREAELILSQIFQYDLSPDVFTYTSLIL------GHCRNR 247
Query: 444 NMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQK 503
N+ D A D M G D + +LI G C G +D+A D ++
Sbjct: 248 NL--------------DLAFGVFDRMVKEGCDPNSVTYSTLINGLCNEGRVDEALDMLEE 293
Query: 504 MVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQ 563
M+EK G Y L + C+ +A + V +++ +P TY LI L
Sbjct: 294 MIEK-GIEPTVYTYTLPITALCAIEHEEEAIELVAR-MKKRGCRPNVQTYTALISGLSRL 351
Query: 564 RGFKDALSLLCLMKDHGFPP 583
+ A+ L M G P
Sbjct: 352 GKLEVAIGLYHKMLKEGLVP 371
Score = 48.1 bits (113), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 86/410 (20%), Positives = 155/410 (37%), Gaps = 53/410 (12%)
Query: 141 ESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASH 200
E DEA ++EK E + TY L + + +E LV MKK+G
Sbjct: 281 EGRVDEALDMLEEMIEKGIEP-TVYTYTLPITALCAIEHEEEAIELVARMKKRGCRPNVQ 339
Query: 201 VRNKMTEKFEKEG-LESDLEKLKGIFATGSIDNSIEK--------VASRICKVVRSDIWG 251
+ + G LE + + G + N++ V R ++ W
Sbjct: 340 TYTALISGLSRLGKLEVAIGLYHKMLKEGLVPNTVTYNALINELCVGGRFSTALKIFHW- 398
Query: 252 DDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVL 311
+E N N+++K + LG + +KA++ F + G + +YN + +
Sbjct: 399 --MEGHGSLANTQTYNEIIKGLC--LGGDIEKAMVLFEKMLKMGPLP-TVVTYNTLINGY 453
Query: 312 GREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSV 371
+ ++ ++LD M+ G E + T +++ FS+ ++ A ++ + C P+
Sbjct: 454 LTKGNVNNAARLLDLMKENGCEPDEWTYNELVSGFSKWGKLESASFYFQEMVECGLNPNP 513
Query: 372 NCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKIL 431
T L+ ++D+ L +++ E G N+V+ L R E KI
Sbjct: 514 VSYTALIDGHSKDGKVDIAL--SLLKRMEEMGCNPNVESYNAVINGLSKENRFSEAEKIC 571
Query: 432 KAMEEGGFIAS------------SNMKSKIAFR-----------------------LSSA 456
M E G + + N +++ AF+ L
Sbjct: 572 DKMVEQGLLPNVITYTTLIDGLCRNGRTQFAFKIFHDMEKRKCLPNLYTYSSLIYGLCQE 631
Query: 457 GKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVE 506
GK DEA + ME G + + SLI G V G +D A ++MV+
Sbjct: 632 GKADEAEILLKEMERKGLAPDEVTFTSLIDGFVVLGRIDHAFLLLRRMVD 681
>gi|357165906|ref|XP_003580534.1| PREDICTED: pentatricopeptide repeat-containing protein At1g79490,
mitochondrial-like [Brachypodium distachyon]
Length = 775
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 92/385 (23%), Positives = 161/385 (41%), Gaps = 53/385 (13%)
Query: 282 KKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVK 341
+ A F+ ++GF + +YNA+ SVL + ++VLDEM G ++ T
Sbjct: 198 EPAFYCFKRLRDAGFRGLETPTYNALLSVLLTRGLAFKAFEVLDEMSVSGCALDKGT--- 254
Query: 342 VLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQL--DMRLFSKVVRVF 399
YE A+ + +I S++L +MR V R
Sbjct: 255 -----------------YELAVPALARAG---------RIDASRKLFDEMRQRDGVGRAS 288
Query: 400 RENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKK 459
+V+ D + S GR+ + + M G S+++ + + L AGK
Sbjct: 289 PGVYSVMVDVLAKS--------GRLDAAMGMYREMVAVGHRVSTSVSTAMVEGLVRAGKL 340
Query: 460 DEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEG--TSHAGYAI 517
D E + M G ++ +++ + +G LD AA F M EK G + A YA
Sbjct: 341 DAGMELWEEMRRGGLRPSFGLYTMVVEANARSGRLDVAAKLFGDM-EKSGFFPTPATYAC 399
Query: 518 DLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMK 577
LV + S + +D +++ + +P +T+ L+ L +R A +L MK
Sbjct: 400 --LVEMHASAGQ-VDIAMRMYHSMANAGTRPGLSTFTALLTMLANKRLLDLAAKVLLEMK 456
Query: 578 DHGFPPFV---DPFIKYVSKSGTSDDAIAFLKGMTSKRFPSMSVVL-CLFAAFFQARRHS 633
GFP V D + Y+ K G+++ A+ +L+ M S + + ++ LF + + +
Sbjct: 457 ASGFPIEVTASDLLMIYI-KDGSTELALRWLRFMGSAGIRTNNFIIRQLFESCMKMGLYD 515
Query: 634 EAQDLLSKCPRYVRNHADVLNLLYS 658
A+ LL YV A V +LY+
Sbjct: 516 SARPLLET---YVGAAAKVDMILYT 537
>gi|356557306|ref|XP_003546958.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g65820-like [Glycine max]
Length = 654
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 99/469 (21%), Positives = 185/469 (39%), Gaps = 57/469 (12%)
Query: 218 LEKLKGIFATGSIDNSIEKVASRICKVVR------SDIWGDDVERQLRDLNVTFSNDLVK 271
L +L+ I + D++ ++ AS + KV R S + +E LR+ V L +
Sbjct: 69 LIRLQEISINHTDDHTHDEFASDVEKVYRILRKYHSRV--PKLELALRESGVVVRPGLTE 126
Query: 272 FVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKG 331
V+ + GD A F+ WA + + D +Y AM VL R W +++EMR +
Sbjct: 127 RVLSRCGDAGNLAYRFYSWASKQSGHRLDHDAYKAMIKVLSRMRQFGAVWALIEEMRQEN 186
Query: 332 -YEMEMETCVKVLGRFSERNMVKEAV-------------DLYEFA----MACKN------ 367
+ + + V ++ RF+ MV +AV D Y F CKN
Sbjct: 187 PHLITPQVFVILMRRFASARMVHKAVEVLDEMPKYGCEPDEYVFGCLLDALCKNGSVKEA 246
Query: 368 -----------KPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAML-NSVL 415
KPSV T LL +L + +K V V ++ + D ++ N++L
Sbjct: 247 ASLFEDMRYRWKPSVKHFTSLLYGWCKEGKL---MEAKHVLVQMKDMGIEPDIVVYNNLL 303
Query: 416 KALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSD 475
G+MG+ +LK M ++ + + L + +EA M+ +G
Sbjct: 304 GGYAQAGKMGDAYDLLKEMRRKRCEPNATSYTVLIQSLCKHERLEEATRLFVEMQTNGCQ 363
Query: 476 VGDKMWVSLIKGHCVAGDLDKAADCFQKMVEK-EGTSHAGYAIDLLVNTYCSKNRAIDAC 534
+ +LI G C G + + + +M+++ + Y +L + +
Sbjct: 364 ADVVTYSTLISGFCKWGKIKRGYELLDEMIQQGHFPNQVIYQHIMLAHEKKEELEECKE- 422
Query: 535 KFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPFIKYVS- 593
+ N +++ P + Y +I+ K+ + L M+ G P +D F+ ++
Sbjct: 423 --LVNEMQKIGCAPDLSIYNTVIRLACKLGEVKEGIQLWNEMESSGLSPGMDTFVIMING 480
Query: 594 --KSGTSDDAIAFLKGMTSKRF---PSMSVVLCLFAAFFQARRHSEAQD 637
+ G +A + K M + P + L + +A + A+D
Sbjct: 481 FLEQGCLVEACEYFKEMVGRGLFTAPQYGTLKELMNSLLRAEKLEMAKD 529
Score = 43.5 bits (101), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 101/516 (19%), Positives = 199/516 (38%), Gaps = 45/516 (8%)
Query: 99 SDFTVVSDIFYKF-SDVNDISKQLELSGVVFTHEMVLKVLKNLESSPDEARRFFNWVLEK 157
SD V I K+ S V + L SGVV + +VL + + A RF++W ++
Sbjct: 90 SDVEKVYRILRKYHSRVPKLELALRESGVVVRPGLTERVLSRCGDAGNLAYRFYSWASKQ 149
Query: 158 ESERLSSKTYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVAS-----------------H 200
RL Y M++++ W L++ M+++ + + H
Sbjct: 150 SGHRLDHDAYKAMIKVLSRMRQFGAVWALIEEMRQENPHLITPQVFVILMRRFASARMVH 209
Query: 201 VRNKMTEKFEKEGLESDLEKLKGIFATGSIDNSIEKVASRICKVVRSDIWGDDVERQLRD 260
++ ++ K G E D E + G N K A+ + + +R W V+
Sbjct: 210 KAVEVLDEMPKYGCEPD-EYVFGCLLDALCKNGSVKEAASLFEDMRYR-WKPSVKH---- 263
Query: 261 LNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRF 320
F++ L + + E K L+ + + G ++ D YN + + +
Sbjct: 264 ----FTSLLYGWCKEGKLMEAKHVLVQMK---DMG-IEPDIVVYNNLLGGYAQAGKMGDA 315
Query: 321 WKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRK 380
+ +L EMR K E + ++ + ++EA L F N + T+
Sbjct: 316 YDLLKEMRRKRCEPNATSYTVLIQSLCKHERLEEATRL--FVEMQTNGCQADVVTYSTLI 373
Query: 381 IVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFI 440
K ++ +++ + G+ + ++ A + EC +++ M++ G
Sbjct: 374 SGFCKWGKIKRGYELLDEMIQQGHFPNQVIYQHIMLAHEKKEELEECKELVNEMQKIGCA 433
Query: 441 ASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADC 500
++ + + G+ E + + ME+SG G +V +I G G L +A +
Sbjct: 434 PDLSIYNTVIRLACKLGEVKEGIQLWNEMESSGLSPGMDTFVIMINGFLEQGCLVEACEY 493
Query: 501 FQKMVEKEGTSHAGYA-IDLLVNTYCSKNRAIDACKFVHNCVR-----EYDLKPWHTTYE 554
F++MV + + Y + L+N+ + ++ K NC+ + ++ W T +
Sbjct: 494 FKEMVGRGLFTAPQYGTLKELMNSLLRAEK-LEMAKDAWNCITASKGCQLNVSAW-TIW- 550
Query: 555 ELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPFIK 590
I L + K+A S M D P D F K
Sbjct: 551 --IHALFSKGHVKEACSFCIDMMDKDLMPNPDTFAK 584
>gi|255660892|gb|ACU25615.1| pentatricopeptide repeat-containing protein [Glandularia araucana]
Length = 481
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 78/364 (21%), Positives = 148/364 (40%), Gaps = 48/364 (13%)
Query: 258 LRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCI 317
+R+L +F ++LV V+ + AL FF W E S +H+ ++ + +LGR +
Sbjct: 3 IRNLVPSFDHELVYNVLHS-SKTSEHALQFFXWVERSNLFEHNRETHLKIIEILGRASKL 61
Query: 318 DRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFL 377
+ +L +M KG E + + V ++ + ++ +V+E+V
Sbjct: 62 NHARCILLDMPKKGLEWDEDMWVMMIDSYGKQGIVQESV--------------------- 100
Query: 378 LRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEG 437
++F K+ E G T N++ K ++ GR + M
Sbjct: 101 ------------KMFQKM----EELGVERTIKSYNALFKVILRRGRYMMAKRYFNKMLSE 144
Query: 438 GFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKA 497
G + + + + + +GK + AN F + M++ + ++I G+ +++A
Sbjct: 145 GIEPTRHTFNVMIWGFFLSGKVETANRFFEDMKSREISPDVVTYNTMINGYYRVKKMEEA 204
Query: 498 ADCFQKMVEKEGTSHAGYAI--DLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEE 555
F VE +G + + L+ Y S ++ DA + V ++ + +KP TY
Sbjct: 205 EKYF---VEMKGRNIEPTVVTYTTLIKGYVSVDQVDDALRLVEE-MKGFGIKPNAITYST 260
Query: 556 LIKNLLVQRGFKDALSLLCLMKDHGFPPFVDP-FIKYVS---KSGTSDDAIAFLKGMTSK 611
L+ L +A L M D P + F++ +S KSG D A LK M
Sbjct: 261 LLPGLCNAEKMSEARVXLKEMMDKYLAPTDNSIFMRLISSHCKSGNLDAAADVLKAMXRL 320
Query: 612 RFPS 615
P+
Sbjct: 321 SVPT 324
Score = 47.4 bits (111), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 104/498 (20%), Positives = 195/498 (39%), Gaps = 81/498 (16%)
Query: 128 FTHEMVLKVLKNLESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLV 187
F HE+V VL + ++S + A +FF WV + +T+ ++ I+G + ++
Sbjct: 10 FDHELVYNVLHSSKTS-EHALQFFXWVERSNLFEHNRETHLKIIEILGRASKLNHARCIL 68
Query: 188 DVMKKKGYGVASHVRNKMTEKFEKEGLESDLEKLKGIFATGSIDNSIEKVASRICKVVRS 247
M KKG + M + + K+G+ + K+ +E++
Sbjct: 69 LDMPKKGLEWDEDMWVMMIDSYGKQGIVQESVKMF---------QKMEELG--------- 110
Query: 248 DIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAM 307
VER ++ N F V+ + G F + E ++ ++N M
Sbjct: 111 ------VERTIKSYNALFK------VILRRGRYMMAKRYFNKMLSEG--IEPTRHTFNVM 156
Query: 308 A---SVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMA 364
+ G+ + +RF+ ++M+S+ ++ T ++ + ++EA + Y M
Sbjct: 157 IWGFFLSGKVETANRFF---EDMKSREISPDVVTYNTMINGYYRVKKMEEA-EKYFVEMK 212
Query: 365 CKN-KPSVNCCTFLLRKIVVSKQLD--MRLFSKVVRVFRENGNVLTDAMLNSVLKALISV 421
+N +P+V T L++ V Q+D +RL ++ + F N +T +++L L +
Sbjct: 213 GRNIEPTVVTYTTLIKGYVSVDQVDDALRLVEEM-KGFGIKPNAIT---YSTLLPGLCNA 268
Query: 422 GRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSA----GKKDEANEFMDHMEASGSDVG 477
+M E LK M + + N I RL S+ G D A + + M
Sbjct: 269 EKMSEARVXLKEMMDKYLAPTDN---SIFMRLISSHCKSGNLDAAADVLKAMXRLSVPTE 325
Query: 478 DKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFV 537
+ LI+ C G DKA K++EK+ + L + Y
Sbjct: 326 AGHYGVLIENFCKXGQYDKAVKLLDKLIEKDIILRPQSTLHLEPSAY------------- 372
Query: 538 HNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPFIKYVSKSGT 597
N + EY E + L++ G +D +L L++ H S+ G+
Sbjct: 373 -NPMIEYLCNNGQAAKAETLVRQLLKLGVQDPTALNTLIRGH-------------SQEGS 418
Query: 598 SDDAIAFLKGMTSKRFPS 615
D A LK M ++ S
Sbjct: 419 PDSAFELLKIMLRRKVDS 436
>gi|222629056|gb|EEE61188.1| hypothetical protein OsJ_15186 [Oryza sativa Japonica Group]
Length = 897
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 78/334 (23%), Positives = 146/334 (43%), Gaps = 14/334 (4%)
Query: 282 KKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCV- 340
+ AL R E G + ++ +Y + S + +D KV DEM +KG E++ E +
Sbjct: 531 QAALDIMREMRERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKG-EVKPEAVMY 589
Query: 341 -KVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVF 399
++G + ++ + A+ LY M + ++ T+ L +V + +D R V
Sbjct: 590 NALIGGYCDQGKLDTAL-LYRDRMVERGV-AMTVATYNL--LVHALFMDGRGTEAYELVE 645
Query: 400 RENGNVLTDAML--NSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAG 457
G L + N ++ G + + +I + M G A+ + + + LS G
Sbjct: 646 EMGGKGLAPDVFTYNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTALIYALSKKG 705
Query: 458 KKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAI 517
+ E ++ D G ++ +LI H +G++D+A + +M EK+ +
Sbjct: 706 QVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEM-EKKRIAPDDVTY 764
Query: 518 DLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMK 577
+ L+ C R +A K + + E ++P TY LI ++ KDAL + M
Sbjct: 765 NTLMRGLCLLGRVDEARKLIDE-MTERGIQPDLVTYNTLISGYSMKGDVKDALRIRNEMM 823
Query: 578 DHGFPPFV---DPFIKYVSKSGTSDDAIAFLKGM 608
+ GF P + + I+ + K+G DDA +K M
Sbjct: 824 NKGFNPTLLTYNALIQGLCKNGQGDDAENMVKEM 857
Score = 52.8 bits (125), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 105/502 (20%), Positives = 205/502 (40%), Gaps = 46/502 (9%)
Query: 43 TLSSLLPTSSHTFYSRFSRLPICYSRLINLIDPKNPNFRNPMICSYSSEPAMEQKESDFT 102
+L +LL T+S + L + YSR+ +L P + +P++ + S PA F
Sbjct: 418 SLPNLLLTASAAVRPHATSLRL-YSRMKSLSLPISTASLHPLLSALPSAPA-------FA 469
Query: 103 VVSDIFYKFSDVNDISKQLELSGVVFTHEMVLKVLKNLESSPDEARRFFNWVLEKESERL 162
+ +D+F +L L T ++L+ +L S+ AR L ++ R
Sbjct: 470 LFADMF-----------RLRLPLCTTTFNIMLR---HLCSAGKPARAL---ELLRQMPRP 512
Query: 163 SSKTYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVA--SHVRNKMTEKFEKEG-LESDLE 219
++ TYN ++ G VQ ++ M+++G G+A + + + K G ++ ++
Sbjct: 513 NAVTYNTVIAGFCSRGRVQAALDIMREMRERG-GIAPNQYTYGTVISGWCKVGRVDEAVK 571
Query: 220 KLKGIFATGSIDNSIEKVASRI---CKVVRSD---IWGDD-VERQLRDLNVTFSNDLVKF 272
+ G + + I C + D ++ D VER + T++ +
Sbjct: 572 VFDEMLTKGEVKPEAVMYNALIGGYCDQGKLDTALLYRDRMVERGVAMTVATYNLLVHAL 631
Query: 273 VVDKLGDEPKKALIFFRWAEESGF--VKHDESSYNAMASVLGREDCIDRFWKVLDEMRSK 330
+D G E + EE G + D +YN + + +E + + ++ + M +
Sbjct: 632 FMDGRGTE------AYELVEEMGGKGLAPDVFTYNILINGHCKEGNVKKALEIFENMSRR 685
Query: 331 GYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMR 390
G + T ++ S++ V+E L++ A+ +P + L+ S +D R
Sbjct: 686 GVRATVVTYTALIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNID-R 744
Query: 391 LFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIA 450
F +++ + D N++++ L +GR+ E K++ M E G + +
Sbjct: 745 AF-EIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTERGIQPDLVTYNTLI 803
Query: 451 FRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGT 510
S G +A + M G + + +LI+G C G D A + ++MVE T
Sbjct: 804 SGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQGLCKNGQGDDAENMVKEMVENGIT 863
Query: 511 SHAGYAIDLLVNTYCSKNRAID 532
I L+ RAID
Sbjct: 864 PDDSTYISLIEGLTTEDERAID 885
Score = 47.0 bits (110), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 48/171 (28%), Positives = 71/171 (41%), Gaps = 4/171 (2%)
Query: 412 NSVLKALISVGRMGECNKILKAMEEGGFIASSNMK-SKIAFRLSSAGKKDEANEFMDHME 470
N+V+ S GR+ I++ M E G IA + + G+ DEA + D M
Sbjct: 518 NTVIAGFCSRGRVQAALDIMREMRERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEML 577
Query: 471 ASGSDVGDK-MWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNR 529
G + M+ +LI G+C G LD A +MVE+ G + +LLV+ R
Sbjct: 578 TKGEVKPEAVMYNALIGGYCDQGKLDTALLYRDRMVER-GVAMTVATYNLLVHALFMDGR 636
Query: 530 AIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHG 580
+A + V + L P TY LI + K AL + M G
Sbjct: 637 GTEAYELVEE-MGGKGLAPDVFTYNILINGHCKEGNVKKALEIFENMSRRG 686
Score = 43.5 bits (101), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 49/118 (41%), Gaps = 4/118 (3%)
Query: 453 LSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSH 512
L SAGK A E + M + + ++I G C G + A D ++M E+ G +
Sbjct: 493 LCSAGKPARALELLRQMPRPNA----VTYNTVIAGFCSRGRVQAALDIMREMRERGGIAP 548
Query: 513 AGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDAL 570
Y +++ +C R +A K + + ++KP Y LI Q AL
Sbjct: 549 NQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCDQGKLDTAL 606
>gi|225447872|ref|XP_002269015.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
mitochondrial-like [Vitis vinifera]
Length = 656
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 68/279 (24%), Positives = 117/279 (41%), Gaps = 12/279 (4%)
Query: 369 PSVNCCTFLLRKIVVSKQLDMR--LFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGE 426
P + C +L + +++M L++++ R+ R + V T N ++ L G++ +
Sbjct: 212 PKIETCNDMLSLFLKLNRMEMAWVLYAEMFRL-RISSTVYT---FNIMVNVLCKEGKLKK 267
Query: 427 CNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIK 486
+ + ME GF + + I SS G + A +D M G + + SLI
Sbjct: 268 AREFIGFMEGLGFKPNVVSYNTIIHGYSSRGNIEGARRILDAMRVKGIEPDSYTYGSLIS 327
Query: 487 GHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDL 546
G C G L++A+ F KMVE G + L++ YC+K A + V++ +
Sbjct: 328 GMCKEGRLEEASGLFDKMVEI-GLVPNAVTYNTLIDGYCNKGDLERAFSYRDEMVKK-GI 385
Query: 547 KPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPP---FVDPFIKYVSKSGTSDDAIA 603
P +TY L+ L ++ +A ++ M+ G P + I S+ G + A
Sbjct: 386 MPSVSTYNLLVHALFMEGRMGEADDMIKEMRKKGIIPDAITYNILINGYSRCGNAKKAFD 445
Query: 604 FLKGMTSKRF-PSMSVVLCLFAAFFQARRHSEAQDLLSK 641
M SK P+ L + R EA DL K
Sbjct: 446 LHNEMLSKGIEPTHVTYTSLIYVLSRRNRMKEADDLFEK 484
Score = 63.9 bits (154), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 85/381 (22%), Positives = 156/381 (40%), Gaps = 44/381 (11%)
Query: 282 KKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVK 341
KKA F + E GF K + SYN + I+ ++LD MR KG E + T
Sbjct: 266 KKAREFIGFMEGLGF-KPNVVSYNTIIHGYSSRGNIEGARRILDAMRVKGIEPDSYTYGS 324
Query: 342 VLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRE 401
++ + ++EA L++ + P+ L+ L+ R FS + ++
Sbjct: 325 LISGMCKEGRLEEASGLFDKMVEIGLVPNAVTYNTLIDGYCNKGDLE-RAFSYRDEMVKK 383
Query: 402 NGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASS------------------ 443
G + + + N ++ AL GRMGE + ++K M + G I +
Sbjct: 384 -GIMPSVSTYNLLVHALFMEGRMGEADDMIKEMRKKGIIPDAITYNILINGYSRCGNAKK 442
Query: 444 ------NMKSK-----------IAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIK 486
M SK + + LS + EA++ + + G M+ +++
Sbjct: 443 AFDLHNEMLSKGIEPTHVTYTSLIYVLSRRNRMKEADDLFEKILDQGVSPDVIMFNAMVD 502
Query: 487 GHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDL 546
GHC G++++A ++M +++ + L+ C + + ++ + + + ++ +
Sbjct: 503 GHCANGNVERAFMLLKEM-DRKSVPPDEVTFNTLMQGRCREGK-VEEARMLLDEMKRRGI 560
Query: 547 KPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFV---DPFIKYVSKSGTSDDAIA 603
KP H +Y LI + KDA + M GF P + + IK + K+ D A
Sbjct: 561 KPDHISYNTLISGYGRRGDIKDAFRVRDEMLSIGFNPTLLTYNALIKCLCKNQEGDLAEE 620
Query: 604 FLKGMTSKRF-PSMSVVLCLF 623
LK M +K P S L L
Sbjct: 621 LLKEMVNKGISPDDSTYLSLI 641
Score = 47.4 bits (111), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 89/415 (21%), Positives = 167/415 (40%), Gaps = 55/415 (13%)
Query: 120 QLELSGVVFTHEMVLKVLKNLESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGL 179
+L +S V+T +++ VL E +AR F + +E + + +YN ++ G
Sbjct: 242 RLRISSTVYTFNIMVNVLCK-EGKLKKAREFIGF-MEGLGFKPNVVSYNTIIHGYSSRGN 299
Query: 180 VQEFWGLVDVMKKKGYGVASHVRNKMTEKFEKEGLESDLEKLKGIF----ATGSIDNSI- 234
++ ++D M+ KG S+ + KEG LE+ G+F G + N++
Sbjct: 300 IEGARRILDAMRVKGIEPDSYTYGSLISGMCKEG---RLEEASGLFDKMVEIGLVPNAVT 356
Query: 235 -EKVASRICK---VVRSDIWGDDVERQLRDLNVTFSNDLVK--FVVDKLGDEPKKALIFF 288
+ C + R+ + D++ ++ +V+ N LV F+ ++G+ A
Sbjct: 357 YNTLIDGYCNKGDLERAFSYRDEMVKKGIMPSVSTYNLLVHALFMEGRMGE----ADDMI 412
Query: 289 RWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSE 348
+ + G + D +YN + + R + + + +EM SKG E T ++ S
Sbjct: 413 KEMRKKGIIP-DAITYNILINGYSRCGNAKKAFDLHNEMLSKGIEPTHVTYTSLIYVLSR 471
Query: 349 RNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTD 408
RN +KEA DL+E + P D+ +F+ +V NGNV
Sbjct: 472 RNRMKEADDLFEKILDQGVSP------------------DVIMFNAMVDGHCANGNVERA 513
Query: 409 AML----------------NSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFR 452
ML N++++ G++ E +L M+ G + +
Sbjct: 514 FMLLKEMDRKSVPPDEVTFNTLMQGRCREGKVEEARMLLDEMKRRGIKPDHISYNTLISG 573
Query: 453 LSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEK 507
G +A D M + G + + +LIK C + D A + ++MV K
Sbjct: 574 YGRRGDIKDAFRVRDEMLSIGFNPTLLTYNALIKCLCKNQEGDLAEELLKEMVNK 628
>gi|224134148|ref|XP_002321748.1| predicted protein [Populus trichocarpa]
gi|222868744|gb|EEF05875.1| predicted protein [Populus trichocarpa]
Length = 1041
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 108/513 (21%), Positives = 194/513 (37%), Gaps = 63/513 (12%)
Query: 146 EARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRNKM 205
E +R + +E++ S TYN+++ + G V E + L +M KKG + +
Sbjct: 254 EGKRLL-FEMEEKGCSPSLVTYNVVIGGLCRAGEVDEAFELKKLMDKKGLVADVFTYSIL 312
Query: 206 TEKFEKEGLESD----LEKL--KG-----IFATGSIDNSIEKVASRICKVVRSDIWGDDV 254
+ F K+ ++ LE++ KG + T ID + + S V+ ++ V
Sbjct: 313 IDGFGKQKRCTEAKLMLEEMFSKGLKPGHVAYTALIDGFMRQGDSGEAFRVKEEMLARGV 372
Query: 255 ERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGRE 314
+ LN+ N LVK V K GD K + +K D +YN M +E
Sbjct: 373 K-----LNLFTYNALVKGVC-KFGDMEKADALLNEMIMVG--IKPDTQTYNNMIEGYLKE 424
Query: 315 DCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCC 374
R +L EM+ TC ++ +++A ++E ++ KP+
Sbjct: 425 QNTSRVKDLLSEMKKSNLVPTAYTCGMIINGLCRHGSIEDASRVFEIMVSLGVKPNA--- 481
Query: 375 TFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAM 434
+ +++K + GR E +ILK M
Sbjct: 482 ----------------------------------VIYTTLIKGHVQEGRFQEAVRILKVM 507
Query: 435 EEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDL 494
++ G + + L + K +EA +++ M G + +LI G+C +G++
Sbjct: 508 DKKGVQPDVLCYNSVIIGLCKSRKMEEAKDYLVEMIERGLKPNVYTYGALIHGYCKSGEM 567
Query: 495 DKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYE 554
A F++M+ G + L++ YC + +A + C+ + P TY
Sbjct: 568 QVADRYFKEML-GCGIAPNDVVCTALIDGYCKEGSTTEATS-IFRCMLGRSVHPDVRTYS 625
Query: 555 ELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPFIKYVS---KSGTSDDAIAFLKGMTSK 611
LI LL + A+ LL + G P V + +S K G A + M K
Sbjct: 626 ALIHGLLRNGKLQGAMELLSEFLEKGLVPDVFTYNSIISGFCKQGGIGKAFQLHEYMCQK 685
Query: 612 RF-PSMSVVLCLFAAFFQARRHSEAQDLLSKCP 643
P++ L +A A++L P
Sbjct: 686 GISPNIITYNALINGLCKAGEIERARELFDGIP 718
Score = 58.5 bits (140), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 84/388 (21%), Positives = 155/388 (39%), Gaps = 27/388 (6%)
Query: 265 FSNDLVKFVVDKLGDEPKKALIFFRWAE-ESGFVKHDESSYNAMASVLGREDCIDRFWKV 323
S D+V V+ K ++PK+ L FF W + + GF + + S++ +A +L R V
Sbjct: 65 LSPDVVHSVITKQVNDPKRLLDFFNWVQFQMGFSQKLQ-SFSILALILCNSRLFSRADSV 123
Query: 324 LDE---MRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRK 380
+++ M S GY +++ +K F DL + + F +
Sbjct: 124 VNQMIMMSSGGYSEILDSLIKSCKEF----------DLNNVNGNENSNNNDRGVVF---E 170
Query: 381 IVVSKQLDMRLFSKVVRVF---RENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEG 437
+++ LF + V F + NG V+ N +L L+ ++ + M E
Sbjct: 171 LLIDGYKKKGLFDEAVSFFLGAKRNGFVVGLLCCNGLLSDLLKANKLELFWRFYNGMLEA 230
Query: 438 GFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKA 497
+ + + AG E + ME G + +I G C AG++D+A
Sbjct: 231 NVLHDVYTYTHLINAHFRAGNAKEGKRLLFEMEEKGCSPSLVTYNVVIGGLCRAGEVDEA 290
Query: 498 ADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELI 557
+ +K+++K+G + +L++ + + R +A K + + LKP H Y LI
Sbjct: 291 FE-LKKLMDKKGLVADVFTYSILIDGFGKQKRCTEA-KLMLEEMFSKGLKPGHVAYTALI 348
Query: 558 KNLLVQRGFKDALSLLCLMKDHGFPPFV---DPFIKYVSKSGTSDDAIAFLKGMTSKRF- 613
+ Q +A + M G + + +K V K G + A A L M
Sbjct: 349 DGFMRQGDSGEAFRVKEEMLARGVKLNLFTYNALVKGVCKFGDMEKADALLNEMIMVGIK 408
Query: 614 PSMSVVLCLFAAFFQARRHSEAQDLLSK 641
P + + + + S +DLLS+
Sbjct: 409 PDTQTYNNMIEGYLKEQNTSRVKDLLSE 436
Score = 53.9 bits (128), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 60/281 (21%), Positives = 112/281 (39%), Gaps = 43/281 (15%)
Query: 312 GREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSV 371
G DR++K EM G C ++ + + EA ++ + P V
Sbjct: 565 GEMQVADRYFK---EMLGCGIAPNDVVCTALIDGYCKEGSTTEATSIFRCMLGRSVHPDV 621
Query: 372 NCCTFLLRKIVVSKQLD--MRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNK 429
+ L+ ++ + +L M L S+ F E G V NS++ G +G+ +
Sbjct: 622 RTYSALIHGLLRNGKLQGAMELLSE----FLEKGLVPDVFTYNSIISGFCKQGGIGKAFQ 677
Query: 430 ILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHC 489
+ + M + G + + + L AG+ + A E D + G + ++I G+C
Sbjct: 678 LHEYMCQKGISPNIITYNALINGLCKAGEIERARELFDGIPGKGLAHNAVTYATIIDGYC 737
Query: 490 VAGDLDKAADCFQKMV------------------EKEGTS-----------HAGYA---- 516
+G+L KA F +M KEG + G+A
Sbjct: 738 KSGNLSKAFRLFDEMTLKGVPPDSFVYSALIDGCRKEGNTEKALSLFLESVQKGFASTSS 797
Query: 517 IDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELI 557
++ L++ +C + I+A + + + V ++ +KP H TY LI
Sbjct: 798 LNALMDGFCKSGKVIEANQLLEDMVDKH-VKPDHVTYTILI 837
>gi|449529622|ref|XP_004171797.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
mitochondrial-like [Cucumis sativus]
Length = 618
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 76/351 (21%), Positives = 137/351 (39%), Gaps = 18/351 (5%)
Query: 302 SSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEF 361
SS+N + L + + + + + +EMR G ++ T + N V EA+
Sbjct: 92 SSFNRLLGGLAKINHYSQLFSLYNEMRLAGLSPDLFTLSILANCLCNVNRVSEALAAMAG 151
Query: 362 AMACKNKPSVNCCTFLLRKIVVSKQLD--MRLFSKVVRVFRENGNVLTDAMLNSVLKALI 419
+ P+V T L++ + + ++ RLF ++ ++ G +++K L
Sbjct: 152 ILRRGYIPNVVTYTTLIKGLCMEHRISEATRLFLRMQKL----GCTPNAVTYGTLIKGLC 207
Query: 420 SVGRMGECNKILKAMEEGGFIASSNMK------SKIAFRLSSAGKKDEANEFMDHMEASG 473
G + K+ K M N K S I L G++DEA E + M+A G
Sbjct: 208 QTGNVNIALKLHKEMLNDASQYGVNCKPGVITYSIIIDGLCKVGREDEAKELFEEMKAQG 267
Query: 474 SDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDA 533
+ +LI G C AG D++ F +MV+ +G +L++T C + + +A
Sbjct: 268 MIPDVISYSTLIHGFCCAGKWDQSKHLFDEMVD-QGVQPDMVTFSVLIDTLCKEGKVTEA 326
Query: 534 CKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPP---FVDPFIK 590
K + ++ + P TY LI + A L M G P I
Sbjct: 327 KKLLEVMIQR-GIVPNLITYNSLIDGFCMVGDLNSARELFLSMPSKGLEPDEISYTTLIN 385
Query: 591 YVSKSGTSDDAIAFLKGMTS-KRFPSMSVVLCLFAAFFQARRHSEAQDLLS 640
K+ +A+ M + P+++ L FQ + +A+ L
Sbjct: 386 GYCKTWKVKEAMNLYNEMLQVGKSPNVTTYGTLLKGLFQKGKVGDAKKLFG 436
Score = 47.4 bits (111), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 54/248 (21%), Positives = 104/248 (41%), Gaps = 6/248 (2%)
Query: 327 MRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQ 386
M SKG E + + ++ + + VKEA++LY + P+V LL+ + +
Sbjct: 368 MPSKGLEPDEISYTTLINGYCKTWKVKEAMNLYNEMLQVGKSPNVTTYGTLLKGLFQKGK 427
Query: 387 L-DMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNM 445
+ D + V++ + + N + L L + E ++ ++ F +
Sbjct: 428 VGDAKKLFGVMKTYGVSAN---SQIYGIFLDGLCKNDCLFEAMELFNELKSYNFKLNIEN 484
Query: 446 KSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMV 505
S + L AGK + A E + + G + +I G C G +D A F+KM
Sbjct: 485 YSCLIDGLCKAGKLETAWELFEKLSQEGLQPDVVTYNIMIHGFCKVGQVDNANILFEKM- 543
Query: 506 EKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRG 565
E+ G + A + L+ +C N+ + K +H V++ D+ P + ++ L
Sbjct: 544 EENGCTPDIIAYNTLLCGFCEGNKLEEVIKLLHKMVQK-DVSPNAASCTIVVDMLCKDEK 602
Query: 566 FKDALSLL 573
+K + LL
Sbjct: 603 YKKFVDLL 610
>gi|449485877|ref|XP_004157297.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At1g07740, mitochondrial-like [Cucumis sativus]
Length = 460
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 84/374 (22%), Positives = 144/374 (38%), Gaps = 18/374 (4%)
Query: 270 VKFVVD-KLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMR 328
+ FV D K +P +AL F E GF KH SY+++ L R + +L +R
Sbjct: 50 IPFVTDVKEVKDPCEALALFENYHEKGF-KHHYPSYSSLIYKLARSRRFEAVETILGHLR 108
Query: 329 SKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLR-KIVVSKQL 387
++ V ++ + + ++V++ ++L+ PS NC L ++++ +
Sbjct: 109 NRNIRCNETLFVALIQHYGKAHLVEKGIELFH------QMPSFNCFRTLQSFNVLLNTLV 162
Query: 388 DMRLFSKVVRVFR---ENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSN 444
D FSK +F+ E G N ++K I G + + M E G S
Sbjct: 163 DCDQFSKASEIFQQAYEMGFRPNSVSYNIMIKGWIKKGGWEQACNLFDEMLEKGVQPSVV 222
Query: 445 MKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKM 504
+ L G+ D A +M G + L++G C G +A M
Sbjct: 223 TYNSXLGVLCRKGEMDTALCLFKNMTEKGHHPNAVTYALLMEGWCFIGKYKEAKKLMFDM 282
Query: 505 VEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQR 564
E G +L+ T+ K ID + + N +++ LKP TY L+ L +
Sbjct: 283 -EFHGCKLRPVNYGVLM-THLGKTGNIDEMESLLNEMKKRRLKPDVVTYNILVNYLCKEG 340
Query: 565 GFKDALSLLCLMKDHGFPPFVDPF---IKYVSKSGTSDDAIAFLKGM-TSKRFPSMSVVL 620
DA +L M+ G P + I +G D A+ L M S +P +
Sbjct: 341 KVGDAYKVLVKMQVGGCDPNAATYRMMIDGYCNAGDFDGAMKILNAMLMSGHYPHLKTFA 400
Query: 621 CLFAAFFQARRHSE 634
L + + +
Sbjct: 401 SLVVGLLKGENNDD 414
Score = 43.5 bits (101), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 61/280 (21%), Positives = 107/280 (38%), Gaps = 12/280 (4%)
Query: 256 RQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGRED 315
R L+ NV L+ +VD D+ KA F+ A E GF + + SYN M ++
Sbjct: 149 RTLQSFNV-----LLNTLVD--CDQFSKASEIFQQAYEMGF-RPNSVSYNIMIKGWIKKG 200
Query: 316 CIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCT 375
++ + DEM KG + + T LG + + A+ L++ + P+
Sbjct: 201 GWEQACNLFDEMLEKGVQPSVVTYNSXLGVLCRKGEMDTALCLFKNMTEKGHHPNAVTYA 260
Query: 376 FLLRK-IVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAM 434
L+ + K + + K++ +G L ++ L G + E +L M
Sbjct: 261 LLMEGWCFIGKYKEAK---KLMFDMEFHGCKLRPVNYGVLMTHLGKTGNIDEMESLLNEM 317
Query: 435 EEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDL 494
++ + + L GK +A + + M+ G D + +I G+C AGD
Sbjct: 318 KKRRLKPDVVTYNILVNYLCKEGKVGDAYKVLVKMQVGGCDPNAATYRMMIDGYCNAGDF 377
Query: 495 DKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDAC 534
D A M+ H L+V +N C
Sbjct: 378 DGAMKILNAMLMSGHYPHLKTFASLVVGLLKGENNDDYVC 417
>gi|356547370|ref|XP_003542086.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g65820-like [Glycine max]
Length = 628
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 86/426 (20%), Positives = 165/426 (38%), Gaps = 47/426 (11%)
Query: 254 VERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGR 313
+E LR+ V L + V+++ GD A F+ WA + + D +Y AM VL R
Sbjct: 83 LELALRESGVVVRPGLTERVLNRCGDAGNLAYRFYSWASKQSGHRLDHDAYKAMIKVLSR 142
Query: 314 EDCIDRFWKVLDEMRSKG-YEMEMETCVKVLGRFSERNMVKEAVDLY-----------EF 361
W +++EMR + + + + V ++ RF+ MV +AV + E+
Sbjct: 143 MRQFGAVWALIEEMRQENPHLITPQVFVILMRRFASARMVHKAVQVLDEMPNYGCEPDEY 202
Query: 362 AMAC------KN-----------------KPSVNCCTFLLRKIVVSKQLDMRLFSKVVRV 398
C KN KPSV T LL +L + +K V V
Sbjct: 203 VFGCLLDALRKNGSVKEAASLFEELRYRWKPSVKHFTSLLYGWCKEGKL---MEAKHVLV 259
Query: 399 FRENGNVLTDAML-NSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAG 457
++ + D ++ N++L +MG+ +LK M G ++ + + L
Sbjct: 260 QMKDAGIEPDIVVYNNLLGGYAQADKMGDAYDLLKEMRRKGCEPNATSYTVLIQSLCKHE 319
Query: 458 KKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAI 517
+ +EA M+ +G + +LI G C G + + + +M+++ +
Sbjct: 320 RLEEATRVFVEMQRNGCQADLVTYSTLISGFCKWGKIKRGYELLDEMIQQGHFPNQVIYQ 379
Query: 518 DLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMK 577
++V + N +++ P + Y +I+ K+ + L M+
Sbjct: 380 HIMVAHEKKEELEECKELV--NEMQKIGCAPDLSIYNTVIRLACKLGEVKEGVRLWNEME 437
Query: 578 DHGFPPFVDPFIKYVS---KSGTSDDAIAFLKGMTSKRF---PSMSVVLCLFAAFFQARR 631
G P +D F+ ++ + G +A + K M + P + L + +A +
Sbjct: 438 SSGLSPSIDTFVIMINGFLEQGCLVEACEYFKEMVGRGLFAAPQYGTLKELMNSLLRAEK 497
Query: 632 HSEAQD 637
A+D
Sbjct: 498 LEMAKD 503
Score = 45.1 bits (105), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 98/526 (18%), Positives = 199/526 (37%), Gaps = 66/526 (12%)
Query: 87 SYSSEPAMEQKESDFTVVSDIFYKF-SDVNDISKQLELSGVVFTHEMVLKVLKNLESSPD 145
+++ + ++ SD V I K+ S V + L SGVV + +VL + +
Sbjct: 52 NHTDDQTHDEFASDVEKVYRILRKYHSRVPKLELALRESGVVVRPGLTERVLNRCGDAGN 111
Query: 146 EARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVAS------ 199
A RF++W ++ RL Y M++++ W L++ M+++ + +
Sbjct: 112 LAYRFYSWASKQSGHRLDHDAYKAMIKVLSRMRQFGAVWALIEEMRQENPHLITPQVFVI 171
Query: 200 -----------HVRNKMTEKFEKEGLESDLEKLKGIFATGSIDNSIEKVASRICKVVRSD 248
H ++ ++ G E D E + G N K A+ + + +R
Sbjct: 172 LMRRFASARMVHKAVQVLDEMPNYGCEPD-EYVFGCLLDALRKNGSVKEAASLFEELRYR 230
Query: 249 IWGDDVER----------------------QLRDLN-----VTFSNDLVKFV-VDKLGDE 280
W V+ Q++D V ++N L + DK+GD
Sbjct: 231 -WKPSVKHFTSLLYGWCKEGKLMEAKHVLVQMKDAGIEPDIVVYNNLLGGYAQADKMGD- 288
Query: 281 PKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCV 340
A + G + + +SY + L + + ++ +V EM+ G + ++ T
Sbjct: 289 ---AYDLLKEMRRKG-CEPNATSYTVLIQSLCKHERLEEATRVFVEMQRNGCQADLVTYS 344
Query: 341 KVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRV-- 398
++ F + +K +L + + + P+ + + I+V+ + L V
Sbjct: 345 TLISGFCKWGKIKRGYELLDEMIQQGHFPN----QVIYQHIMVAHEKKEELEECKELVNE 400
Query: 399 FRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGK 458
++ G ++ N+V++ +G + E ++ ME G S + + G
Sbjct: 401 MQKIGCAPDLSIYNTVIRLACKLGEVKEGVRLWNEMESSGLSPSIDTFVIMINGFLEQGC 460
Query: 459 KDEANEFMDHMEASGSDVGDKMWV--SLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYA 516
EA E+ M G + L+ A L+ A D + + +G A
Sbjct: 461 LVEACEYFKEMVGRGLFAAPQYGTLKELMNSLLRAEKLEMAKDAWNCITASKGCQLNVSA 520
Query: 517 IDLLVNTYCSKNRAIDACKFVHNCVR--EYDLKPWHTTYEELIKNL 560
+ ++ SK +AC F C+ + DL P T+ +L++ L
Sbjct: 521 WTIWIHALFSKGHVKEACSF---CIAMMDKDLMPQPDTFAKLMRGL 563
>gi|449449675|ref|XP_004142590.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04760,
chloroplastic-like [Cucumis sativus]
Length = 581
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 79/346 (22%), Positives = 155/346 (44%), Gaps = 18/346 (5%)
Query: 324 LDEMRSKGYEMEMETCVKVL-GRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIV 382
L+ + SKG++ ++ C K++ G F+ RN+ K+A+ + E + P V ++
Sbjct: 85 LESVVSKGFKPDVVLCTKLIKGFFNSRNL-KKAMRVMEI-LETYGDPDVYSYNAMISGFS 142
Query: 383 VSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIAS 442
+ Q+D ++V R G N ++ +L S G++ +++ + + G S
Sbjct: 143 KANQIDSA--NQVFDRMRSRGFSPDVVTYNIMIGSLCSRGKLELAFEVMDELLKDGCKPS 200
Query: 443 SNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQ 502
+ + G+ +EA E D + + G + ++I+G C G D+A D F
Sbjct: 201 VITYTILIEATILEGRINEALELFDELVSRGLRPDLYTYNAIIRGICKEGMEDRALD-FV 259
Query: 503 KMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLV 562
+ + G + + ++L+ ++ +K+R D + + + V +P T+ LI +
Sbjct: 260 RHLSARGCNPDVVSYNILLRSFLNKSRWEDGERLMKDMVLS-GCEPNVVTHSILISSFCR 318
Query: 563 QRGFKDALSLLCLMKDHGFPP---FVDPFIKYVSKSGTSDDAIAFLKGMTSK-------R 612
+ ++A+++L +MK+ G P DP I K G D AI +L+ M S
Sbjct: 319 EGRVREAVNVLEVMKEKGLTPDSYSYDPLISAFCKEGRLDLAIEYLEKMVSDGCLPDIVN 378
Query: 613 FPSMSVVLCLFAAFFQARRHSEAQDLLSKCPRYVRNHADVLNLLYS 658
+ ++ LC F A E D + CP VR + + + L+S
Sbjct: 379 YNTILATLCKFGCADLALDVFEKLDEVG-CPPTVRAYNTMFSALWS 423
Score = 58.9 bits (141), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 87/397 (21%), Positives = 151/397 (38%), Gaps = 45/397 (11%)
Query: 282 KKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVK 341
KKA+ E G D SYNAM S + + ID +V D MRS+G+ ++ T
Sbjct: 114 KKAMRVMEILETYG--DPDVYSYNAMISGFSKANQIDSANQVFDRMRSRGFSPDVVTYNI 171
Query: 342 VLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQL-------------- 387
++G R ++ A ++ + + KPSV T L+ ++ ++
Sbjct: 172 MIGSLCSRGKLELAFEVMDELLKDGCKPSVITYTILIEATILEGRINEALELFDELVSRG 231
Query: 388 ---DMRLFSKVVRVFRENGNVLTDAML------------------NSVLKALISVGRMGE 426
D+ ++ ++R + G + D L N +L++ ++ R +
Sbjct: 232 LRPDLYTYNAIIRGICKEG--MEDRALDFVRHLSARGCNPDVVSYNILLRSFLNKSRWED 289
Query: 427 CNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIK 486
+++K M G + S + G+ EA ++ M+ G + LI
Sbjct: 290 GERLMKDMVLSGCEPNVVTHSILISSFCREGRVREAVNVLEVMKEKGLTPDSYSYDPLIS 349
Query: 487 GHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDL 546
C G LD A + +KMV +G + ++ T C K D V + E
Sbjct: 350 AFCKEGRLDLAIEYLEKMV-SDGCLPDIVNYNTILATLC-KFGCADLALDVFEKLDEVGC 407
Query: 547 KPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPP---FVDPFIKYVSKSGTSDDAIA 603
P Y + L AL ++ M G P + I + + G D+AI
Sbjct: 408 PPTVRAYNTMFSALWSCGNKIKALEMISEMIRKGIDPDEITYNSLISCLCRDGLVDEAIG 467
Query: 604 FLKGMTSKRF-PSMSVVLCLFAAFFQARRHSEAQDLL 639
L M + RF P++ + +A R E +LL
Sbjct: 468 LLVDMEATRFQPTVISFNIVLLGMCKAHRVFEGIELL 504
Score = 39.7 bits (91), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 47/204 (23%), Positives = 95/204 (46%), Gaps = 19/204 (9%)
Query: 166 TYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRNKMTEKFEKEG-LESDLEKLKGI 224
T+++++ G V+E +++VMK+KG S+ + + F KEG L+ +E L+ +
Sbjct: 308 THSILISSFCREGRVREAVNVLEVMKEKGLTPDSYSYDPLISAFCKEGRLDLAIEYLEKM 367
Query: 225 FATGSIDNSI--EKVASRICKVVRSDIWGDDVER--------QLRDLNVTFSNDLVKFVV 274
+ G + + + + + +CK +D+ D E+ +R N FS +
Sbjct: 368 VSDGCLPDIVNYNTILATLCKFGCADLALDVFEKLDEVGCPPTVRAYNTMFS------AL 421
Query: 275 DKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEM 334
G++ KAL G + DE +YN++ S L R+ +D +L +M + ++
Sbjct: 422 WSCGNK-IKALEMISEMIRKG-IDPDEITYNSLISCLCRDGLVDEAIGLLVDMEATRFQP 479
Query: 335 EMETCVKVLGRFSERNMVKEAVDL 358
+ + VL + + V E ++L
Sbjct: 480 TVISFNIVLLGMCKAHRVFEGIEL 503
>gi|357120906|ref|XP_003562165.1| PREDICTED: pentatricopeptide repeat-containing protein At2g42920,
chloroplastic-like [Brachypodium distachyon]
Length = 529
Score = 63.9 bits (154), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 65/253 (25%), Positives = 110/253 (43%), Gaps = 16/253 (6%)
Query: 398 VFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAG 457
++ + G NS + AL GR+ E ++ AM S M S S A
Sbjct: 196 LYGQCGQAFDVVACNSAIVALTRAGRVDEAREVFDAMPARTVATWSAMVSA----YSRAA 251
Query: 458 KKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVA-GDLDKAADCFQKMVEKEGTSHAGYA 516
+ +A E M+ASG + + VS++ G C A G L++ A ++K G +
Sbjct: 252 RCQDAVELFSAMQASGVEPNANVLVSVL-GCCAALGALEQGA-WVHAYIDKHGVAMNALV 309
Query: 517 IDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLM 576
+ LV+ YC K +I + V + R L +++ ++ L V ++AL+L +
Sbjct: 310 VTALVDMYC-KCGSIHKARHVFDASRSQGLAKL-SSWNAMMLGLAVHGQCQEALALFSEL 367
Query: 577 KDHGFPP----FVDPFIKYVSKSGTSDDAIAFLKGMTSKRF--PSMSVVLCLFAAFFQAR 630
+ +G P F+ + Y SG +D+A A M + P + CL A +A
Sbjct: 368 ETYGLSPDNVTFITILMAY-GHSGMADEAKALFSAMEREYAVTPGIEHYGCLVDALARAG 426
Query: 631 RHSEAQDLLSKCP 643
R EA+D++ P
Sbjct: 427 RLGEAEDVIRTMP 439
>gi|255660908|gb|ACU25623.1| pentatricopeptide repeat-containing protein [Mulguraea
asparagoides]
Length = 481
Score = 63.9 bits (154), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 83/391 (21%), Positives = 159/391 (40%), Gaps = 49/391 (12%)
Query: 258 LRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCI 317
+R+L +F ++LV V+ + AL FFRW E S +HB ++ + +LGR +
Sbjct: 3 IRNLVPSFDHELVYNVLHS-AKTSEHALQFFRWVERSNLFEHBRETHLKIIEILGRASKL 61
Query: 318 DRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFL 377
+ +L +M KG E + + V ++ + ++ +V+E+V
Sbjct: 62 NHARCILLDMPKKGLEWDEDMWVMMIDSYGKQGIVQESV--------------------- 100
Query: 378 LRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEG 437
+LF K+ E G T +++ K ++ GR + M
Sbjct: 101 ------------KLFQKM----EELGVERTLKSYDALFKVILRRGRYMMAKRYFNKMLSE 144
Query: 438 GFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKA 497
G + + + + +GK + AN F + M++ + ++I G+ +++A
Sbjct: 145 GIEPTRXXFNVLIWGFFLSGKVETANRFFEDMKSREISPDVVTYNTMINGYYRVKKMEEA 204
Query: 498 ADCFQKMVEKEGTSHAGYAI--DLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEE 555
F VE +G + + L+ Y S ++ DA + ++ + +KP TY
Sbjct: 205 EKYF---VEMKGRNIEPTVVTYTTLIKGYVSVDQVDDALRLXEE-MKGFGIKPNAITYST 260
Query: 556 LIKNLLVQRGFKDALSLLCLMKDHGFPPFVDP-FIKYVSK---SGTSDDAIAFLKGMTSK 611
L+ L +A S+L M D P + F++ ++ SG D A LK M
Sbjct: 261 LLPGLCNAEKMSEARSILKEMVDKYLAPTDNSIFMRLITSQCTSGHLDAASDVLKAMIRL 320
Query: 612 RFPSMSVVL-CLFAAFFQARRHSEAQDLLSK 641
P+ + L F + ++ +A LL K
Sbjct: 321 SVPTEAGHYGVLIENFCKXGQYDQAVKLLDK 351
Score = 46.6 bits (109), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 103/498 (20%), Positives = 195/498 (39%), Gaps = 81/498 (16%)
Query: 128 FTHEMVLKVLKNLESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLV 187
F HE+V VL + ++S + A +FF WV +T+ ++ I+G + ++
Sbjct: 10 FDHELVYNVLHSAKTS-EHALQFFRWVERSNLFEHBRETHLKIIEILGRASKLNHARCIL 68
Query: 188 DVMKKKGYGVASHVRNKMTEKFEKEGLESDLEKLKGIFATGSIDNSIEKVASRICKVVRS 247
M KKG + M + + K+G+ + KL +E++
Sbjct: 69 LDMPKKGLEWDEDMWVMMIDSYGKQGIVQESVKLF---------QKMEELG--------- 110
Query: 248 DIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAM 307
VER L+ + F V+ + G F + E ++ +N +
Sbjct: 111 ------VERTLKSYDALFK------VILRRGRYMMAKRYFNKMLSEG--IEPTRXXFNVL 156
Query: 308 A---SVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMA 364
+ G+ + +RF+ ++M+S+ ++ T ++ + ++EA + Y M
Sbjct: 157 IWGFFLSGKVETANRFF---EDMKSREISPDVVTYNTMINGYYRVKKMEEA-EKYFVEMK 212
Query: 365 CKN-KPSVNCCTFLLRKIVVSKQLD--MRLFSKVVRVFRENGNVLTDAMLNSVLKALISV 421
+N +P+V T L++ V Q+D +RL ++ + F N +T +++L L +
Sbjct: 213 GRNIEPTVVTYTTLIKGYVSVDQVDDALRLXEEM-KGFGIKPNAIT---YSTLLPGLCNA 268
Query: 422 GRMGECNKILKAMEEGGFIASSNMKSKIAFRL----SSAGKKDEANEFMDHMEASGSDVG 477
+M E ILK M + + N I RL ++G D A++ + M
Sbjct: 269 EKMSEARSILKEMVDKYLAPTDN---SIFMRLITSQCTSGHLDAASDVLKAMIRLSVPTE 325
Query: 478 DKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFV 537
+ LI+ C G D+A K++EK+ + L + Y
Sbjct: 326 AGHYGVLIENFCKXGQYDQAVKLLDKLIEKDIILRPQSTLHLEPSAY------------- 372
Query: 538 HNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPFIKYVSKSGT 597
N + EY E + L++ G +D +L L++ H S+ G+
Sbjct: 373 -NPMIEYLCNNGQAAKAETLVRQLLKLGVQDPTALNTLIRGH-------------SQEGS 418
Query: 598 SDDAIAFLKGMTSKRFPS 615
D A LK M ++ S
Sbjct: 419 PDSAFELLKIMLRRKVDS 436
>gi|242035429|ref|XP_002465109.1| hypothetical protein SORBIDRAFT_01g032160 [Sorghum bicolor]
gi|241918963|gb|EER92107.1| hypothetical protein SORBIDRAFT_01g032160 [Sorghum bicolor]
Length = 1153
Score = 63.9 bits (154), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 85/368 (23%), Positives = 141/368 (38%), Gaps = 44/368 (11%)
Query: 273 VVDKLGDEPKKALIFFRW-AEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKG 331
++DK GD + W A + + SY A+ L + +D V DEM+ KG
Sbjct: 324 LLDKCGDSGDSQSVMEIWNAMVADGYNDNIVSYTAVVDALCQVGRLDEALAVFDEMKEKG 383
Query: 332 YEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRL 391
E + ++ F + +M A++L+ AC PS N T +L K
Sbjct: 384 ISPEQYSYNSLISGFLKADMFDRALELFNHMNAC--GPSPNGYTHVLFINYYGKSGQSLK 441
Query: 392 FSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAF 451
+ + G V A N+VL +L GR+G ++ +++ G + + +
Sbjct: 442 AIQRYEHMKSKGIVPDVAAANAVLSSLARSGRLGMAKRVFYELKDMGVSPDTITYTMMIK 501
Query: 452 RLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTS 511
S A K DEA F M +G CV L
Sbjct: 502 CCSKASKADEAMNFFSDMVETG---------------CVPDVL----------------- 529
Query: 512 HAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALS 571
A++ L++T + +A K H ++E ++P + TY L+ L + K+ +
Sbjct: 530 ----ALNSLIDTLYKGGKGNEAWKLFHQ-LKEMKIEPTNGTYNTLLSGLGREGKVKEVMH 584
Query: 572 LLCLMKDHGFPPFV---DPFIKYVSKSGTSDDAIAFLKGMTSKR-FPSMSVVLCLFAAFF 627
LL M PP + + + +SK+G + AI L MT K P +S +
Sbjct: 585 LLEEMTHSIHPPNLITYNTVLDCLSKNGEVNCAIGMLYSMTEKGCTPDLSSYNTVMYGLI 644
Query: 628 QARRHSEA 635
+ R EA
Sbjct: 645 KEERFEEA 652
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/193 (23%), Positives = 84/193 (43%), Gaps = 5/193 (2%)
Query: 412 NSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEA 471
N+++ L+ R+ + + + GF + + L AGK +A + M
Sbjct: 847 NTIISGLVKSKRLEQAIDLYYNLMSEGFSPTPCTYGPLLDGLLKAGKMVDAENLFNEMLE 906
Query: 472 SGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAI 531
G ++ L+ GH +AG+ + F+KMVE +G + + +L++T C+ R
Sbjct: 907 YGCKPNCTIYNILLNGHRIAGNTENVCQIFEKMVE-QGINPDIKSYTVLIDTLCTAGRLN 965
Query: 532 DACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFV---DPF 588
D + + E L+P Y LI L ++A+ L MK G P + +
Sbjct: 966 DGLSYFRQLL-ELGLEPDLIIYNLLIDGLGKSERIEEAVCLFNEMKKKGIVPNLYTYNSL 1024
Query: 589 IKYVSKSGTSDDA 601
I ++ K+G + +A
Sbjct: 1025 ILHLGKAGKASEA 1037
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 67/308 (21%), Positives = 120/308 (38%), Gaps = 44/308 (14%)
Query: 300 DESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLY 359
DE +YN + +G+ I+ +V EM KGYE T ++ + +++A+DLY
Sbjct: 807 DEFTYNLILDAMGKSMRIEEMLRVQAEMHRKGYESTYVTYNTIISGLVKSKRLEQAIDLY 866
Query: 360 EFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALI 419
M+ P+ CT+ +L L+
Sbjct: 867 YNLMSEGFSPTP--CTY-----------------------------------GPLLDGLL 889
Query: 420 SVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDK 479
G+M + + M E G + + + + AG + + + M G + K
Sbjct: 890 KAGKMVDAENLFNEMLEYGCKPNCTIYNILLNGHRIAGNTENVCQIFEKMVEQGINPDIK 949
Query: 480 MWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDA-CKFVH 538
+ LI C AG L+ F++++E G +LL++ R +A C F
Sbjct: 950 SYTVLIDTLCTAGRLNDGLSYFRQLLEL-GLEPDLIIYNLLIDGLGKSERIEEAVCLF-- 1006
Query: 539 NCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFV---DPFIKYVSKS 595
N +++ + P TY LI +L +A + + G+ P V + I+ S S
Sbjct: 1007 NEMKKKGIVPNLYTYNSLILHLGKAGKASEAAQMYEELLIKGWKPNVFTYNALIRGYSVS 1066
Query: 596 GTSDDAIA 603
G++D+A A
Sbjct: 1067 GSTDNAYA 1074
Score = 49.7 bits (117), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 103/495 (20%), Positives = 194/495 (39%), Gaps = 33/495 (6%)
Query: 124 SGVVFTHEMVLKVLKNLESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEF 183
+G E V+ +L++ P EA F + + ++++ N ML ++ HG V +
Sbjct: 69 AGAGTGTESVVHMLRS-APGPAEALELFTAAARQPTAVHTTESCNYMLELMRAHGRVGDM 127
Query: 184 WGLVDVMKKKGYGVASHVRNKMTEKFEKEGLESDLE---------KLKGIFATGSIDNSI 234
+ D+M+K+ + F G++ L + G+ G N +
Sbjct: 128 AQVFDLMQKQ---IVKANVGTFATVFSGVGVQGGLRSAPVALPVMREAGMSLNGYTYNGL 184
Query: 235 EKVASRICKVVRS--DIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAE 292
I +V+S D +V + + + ++ S ++ G + + + E
Sbjct: 185 ------IYFLVKSGFDAEAMEVYKAMVEDGISPSVRTYSVLMVSFGKKRDVDTVLWLLNE 238
Query: 293 -ESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNM 351
E+ VK + SY VLG+ D +++L +M G + ++ T V+ +
Sbjct: 239 MEARGVKPNVYSYTICIRVLGQAARFDEAYQILGKMEDSGCKPDVVTHTVVIQVLCDAGR 298
Query: 352 VKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVS--KQLDMRLFSKVVRVFRENGNVLTDA 409
+ +A D++ A KP LL K S Q M +++ +V N N+++
Sbjct: 299 LSDAKDVFWKMKASDQKPDRVTYITLLDKCGDSGDSQSVMEIWNAMV-ADGYNDNIVS-- 355
Query: 410 MLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHM 469
+V+ AL VGR+ E + M+E G + + A D A E +HM
Sbjct: 356 -YTAVVDALCQVGRLDEALAVFDEMKEKGISPEQYSYNSLISGFLKADMFDRALELFNHM 414
Query: 470 EASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNR 529
A G V I + +G KA ++ M K G A + ++++ R
Sbjct: 415 NACGPSPNGYTHVLFINYYGKSGQSLKAIQRYEHMKSK-GIVPDVAAANAVLSSLARSGR 473
Query: 530 AIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFV---D 586
+ K V +++ + P TY +IK +A++ M + G P V +
Sbjct: 474 -LGMAKRVFYELKDMGVSPDTITYTMMIKCCSKASKADEAMNFFSDMVETGCVPDVLALN 532
Query: 587 PFIKYVSKSGTSDDA 601
I + K G ++A
Sbjct: 533 SLIDTLYKGGKGNEA 547
Score = 46.2 bits (108), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 73/345 (21%), Positives = 133/345 (38%), Gaps = 8/345 (2%)
Query: 296 FVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEA 355
VK + ++ + S +G + + L MR G + T ++ + EA
Sbjct: 138 IVKANVGTFATVFSGVGVQGGLRSAPVALPVMREAGMSLNGYTYNGLIYFLVKSGFDAEA 197
Query: 356 VDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVL 415
+++Y+ + PSV + L+ + +D L+ ++ G +
Sbjct: 198 MEVYKAMVEDGISPSVRTYSVLMVSFGKKRDVDTVLW--LLNEMEARGVKPNVYSYTICI 255
Query: 416 KALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSD 475
+ L R E +IL ME+ G + + L AG+ +A + M+AS
Sbjct: 256 RVLGQAARFDEAYQILGKMEDSGCKPDVVTHTVVIQVLCDAGRLSDAKDVFWKMKASDQK 315
Query: 476 VGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACK 535
+++L+ +GD + + MV +G + + +V+ C R +D
Sbjct: 316 PDRVTYITLLDKCGDSGDSQSVMEIWNAMV-ADGYNDNIVSYTAVVDALCQVGR-LDEAL 373
Query: 536 FVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDP---FIKYV 592
V + ++E + P +Y LI L F AL L M G P FI Y
Sbjct: 374 AVFDEMKEKGISPEQYSYNSLISGFLKADMFDRALELFNHMNACGPSPNGYTHVLFINYY 433
Query: 593 SKSGTSDDAIAFLKGMTSKRF-PSMSVVLCLFAAFFQARRHSEAQ 636
KSG S AI + M SK P ++ + ++ ++ R A+
Sbjct: 434 GKSGQSLKAIQRYEHMKSKGIVPDVAAANAVLSSLARSGRLGMAK 478
Score = 41.2 bits (95), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 74/312 (23%), Positives = 113/312 (36%), Gaps = 15/312 (4%)
Query: 361 FAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALIS 420
F + K N TF V Q +R + V RE G L N ++ L+
Sbjct: 131 FDLMQKQIVKANVGTFATVFSGVGVQGGLRSAPVALPVMREAGMSLNGYTYNGLIYFLVK 190
Query: 421 VGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANE---FMDHMEASGSDVG 477
G E ++ KAM E G S S + + S GKK + + ++ MEA G
Sbjct: 191 SGFDAEAMEVYKAMVEDGISPSVRTYSVL---MVSFGKKRDVDTVLWLLNEMEARGVKPN 247
Query: 478 DKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFV 537
+ I+ A D+A KM E G +++ C R DA K V
Sbjct: 248 VYSYTICIRVLGQAARFDEAYQILGKM-EDSGCKPDVVTHTVVIQVLCDAGRLSDA-KDV 305
Query: 538 HNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPFIKYVS---K 594
++ D KP TY L+ + + + M G+ + + V +
Sbjct: 306 FWKMKASDQKPDRVTYITLLDKCGDSGDSQSVMEIWNAMVADGYNDNIVSYTAVVDALCQ 365
Query: 595 SGTSDDAIAFLKGMTSKRF-PSMSVVLCLFAAFFQARRHSEAQDL---LSKCPRYVRNHA 650
G D+A+A M K P L + F +A A +L ++ C +
Sbjct: 366 VGRLDEALAVFDEMKEKGISPEQYSYNSLISGFLKADMFDRALELFNHMNACGPSPNGYT 425
Query: 651 DVLNLLYSKKSG 662
VL + Y KSG
Sbjct: 426 HVLFINYYGKSG 437
>gi|357115308|ref|XP_003559432.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22670,
mitochondrial-like [Brachypodium distachyon]
Length = 570
Score = 63.9 bits (154), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 86/395 (21%), Positives = 152/395 (38%), Gaps = 55/395 (13%)
Query: 263 VTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWK 322
V S +V ++ + G + A FF WA H YN M +LG+ D W
Sbjct: 122 VRVSGRMVDKILRRFGSDWVAAFGFFMWAGAQEGYCHHADLYNLMVDILGKFKQFDLLWG 181
Query: 323 VLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLY----EFAMACKNKPSVNCCTFLL 378
++ +M G + + T KV+ R + N +A+D + +F + ++ ++N LL
Sbjct: 182 LIRQMDEIGCLVSLATMTKVMRRLAGANRWTDAIDAFNKMDQFGVV-RDTKAMNA---LL 237
Query: 379 RKIVVSKQLDMRLFSKVVRVFRENGNVLT--DAMLNSVLKALISVGRMGECNKILKAMEE 436
+ K + + VF+E V+ ++ N+++ + E +K MEE
Sbjct: 238 DTLCKEKSV-----KRARGVFQELRGVVPPDESSFNTLVHGWCQARMLNEARDTMKEMEE 292
Query: 437 GGFIAS------------------------SNMKSK-----------IAFRLSSAGKKDE 461
GF S + M SK + L AG+ E
Sbjct: 293 HGFSPSVITYTSLIEAYCMEKDFQTVYAILNEMCSKGCRPNVITYTIVMHALGKAGRTQE 352
Query: 462 ANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLV 521
A + D ++ G + S+I AG L+ A F +M + G + ++
Sbjct: 353 ALDVFDKVKRDGCVPDASFYNSIIYILGRAGRLEDANSVFDEMC-RTGIPPTVAIFNTMI 411
Query: 522 NTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGF 581
+ C ++A +A K + + E KP TY L+K ++ K L+C M
Sbjct: 412 SAACDHSQAENALKILVK-MEEQSCKPDIKTYTPLLKLCCKRQWMKILPFLICHMFRKDI 470
Query: 582 PPFVDPFI---KYVSKSGTSDDAIAFLKGMTSKRF 613
P +I ++ ++G + FL+ M K F
Sbjct: 471 SPDFSTYILLVTWLCRNGKPAQSCLFLEEMVLKGF 505
Score = 48.5 bits (114), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 83/350 (23%), Positives = 137/350 (39%), Gaps = 26/350 (7%)
Query: 249 IWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPK--KALIFFRWAEESGFVKHDESSYNA 306
+WG + RQ+ ++ S + V+ +L + A+ F ++ G V+ D + NA
Sbjct: 179 LWG--LIRQMDEIGCLVSLATMTKVMRRLAGANRWTDAIDAFNKMDQFGVVR-DTKAMNA 235
Query: 307 MASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACK 366
+ L +E + R V E+R E V G + + M+ EA D +
Sbjct: 236 LLDTLCKEKSVKRARGVFQELRGVVPPDESSFNTLVHG-WCQARMLNEARDTMKEMEEHG 294
Query: 367 NKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRE------NGNVLTDAMLNSVLKALIS 420
PSV T L+ + K F V + E NV+T + V+ AL
Sbjct: 295 FSPSVITYTSLIEAYCMEKD-----FQTVYAILNEMCSKGCRPNVITYTI---VMHALGK 346
Query: 421 VGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKM 480
GR E + ++ G + ++ + I + L AG+ ++AN D M +G +
Sbjct: 347 AGRTQEALDVFDKVKRDGCVPDASFYNSIIYILGRAGRLEDANSVFDEMCRTGIPPTVAI 406
Query: 481 WVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNC 540
+ ++I C + A KM E+ LL C K + + F+
Sbjct: 407 FNTMISAACDHSQAENALKILVKMEEQSCKPDIKTYTPLL--KLCCKRQWMKILPFLICH 464
Query: 541 VREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCL--MKDHGFPPFVDPF 588
+ D+ P +TY L+ L R K A S L L M GF P + F
Sbjct: 465 MFRKDISPDFSTYILLVTWLC--RNGKPAQSCLFLEEMVLKGFMPKQETF 512
>gi|224117122|ref|XP_002317482.1| predicted protein [Populus trichocarpa]
gi|222860547|gb|EEE98094.1| predicted protein [Populus trichocarpa]
Length = 433
Score = 63.9 bits (154), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 101/427 (23%), Positives = 166/427 (38%), Gaps = 73/427 (17%)
Query: 128 FTHEMVLKVLKNLESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLV 187
T ++VLKVLK S A FFNWV ++ + LSS YN +L I+G +E ++
Sbjct: 1 MTQDLVLKVLKRHRSDWKPAYIFFNWVSKEGTISLSSCVYNEILDILGRMRRFEELTLVL 60
Query: 188 DVMKKK-------GYGV------ASHVRNKMTEKFEKE---GLESDLEKLKGIFATGSID 231
D M K+ Y V +H+ + F K GLE DL
Sbjct: 61 DEMSKREGFVDEDTYRVLVNRYAGAHMVEEAIGAFNKRRELGLELDLV------------ 108
Query: 232 NSIEKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWA 291
S +K+ +C+ D+ E L F D+ ++ W
Sbjct: 109 -SFQKLLMYLCRYKHVDV----AETLLHSKGHEFGVDIKTM-----------NIVLNGWC 152
Query: 292 EESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNM 351
VLG RFWK + + K T +K L + +
Sbjct: 153 ------------------VLGNVREAKRFWKDIIASKCKPDVFTYGTFIKAL---TNKGK 191
Query: 352 VKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAML 411
+ A+ LYE + KP V C ++ + K++ L V +E G + A
Sbjct: 192 LGTAMKLYEAMWKMQCKPDVVICNCVIDALCFKKRVPEAL--AVFEGMKERGCIPNVATY 249
Query: 412 NSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFR--LSSAGKKDEANEFMDHM 469
NS++K + +GRM + ++L M+E S M +I F L S K +E ++ M
Sbjct: 250 NSLIKHMCKIGRMEKVYELLDEMQEK---KGSCMPDEITFNYLLKSLKKPEEVAGVLERM 306
Query: 470 EASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNR 529
+ +G + + L+K H +K +++M EK G + ++++ K R
Sbjct: 307 KINGCKMNNDTCNLLLKLHADWDSEEKVRYTWEEM-EKNGLGLDRRSYTIMIHWLYDKGR 365
Query: 530 AIDACKF 536
DA ++
Sbjct: 366 VEDALRY 372
>gi|199601721|dbj|BAG70980.1| pentatricopeptide (PPR) repeat-containing protein [Musa balbisiana]
Length = 788
Score = 63.9 bits (154), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 69/288 (23%), Positives = 121/288 (42%), Gaps = 22/288 (7%)
Query: 231 DNSI---EKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIF 287
DNS E++ IC ++ W ++ +R L +F LV V + P AL F
Sbjct: 106 DNSTKKEEQLHETICYMMARRPWTTRLQNSIRSLARSFDQSLV-LAVLRGARHPDHALHF 164
Query: 288 FRWAEESGFVKHDESSYN------AMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVK 341
FRW E++GF +HD +Y A AS+L CI +LD+M + +
Sbjct: 165 FRWVEKTGF-RHDPDTYREIILLLARASMLNHARCI-----LLDDMPDRLVPPSEDMFAS 218
Query: 342 VLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDM--RLFSKVVRVF 399
++ + + +EAV ++ +V + + I+ S ++ M RLF+ ++
Sbjct: 219 LIEGYGCARIPQEAVKIFRRLPELGVTRTVRSYDAVFKAILRSGRVAMARRLFNAMI--- 275
Query: 400 RENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKK 459
G + + N++L +M + M+E G + I + A K
Sbjct: 276 -AEGVLPVLSTYNTLLWGFCLSIKMETAQRFFADMKERGIAPDLVTYNTILNGWARAKKM 334
Query: 460 DEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEK 507
D+A + M A+G + +IKG+ +G +D F +M EK
Sbjct: 335 DDAEKVFAEMTAAGFAPNSISYNIMIKGYVCSGRVDDGLRMFSEMGEK 382
>gi|297808179|ref|XP_002871973.1| kinase family protein [Arabidopsis lyrata subsp. lyrata]
gi|297317810|gb|EFH48232.1| kinase family protein [Arabidopsis lyrata subsp. lyrata]
Length = 831
Score = 63.9 bits (154), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 86/382 (22%), Positives = 157/382 (41%), Gaps = 26/382 (6%)
Query: 144 PDEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRN 203
P EA FN ++E E + S TY ++ + L+ ++K G + + N
Sbjct: 335 PQEAHSIFNTLIE-EGHKPSIITYTTLVTALTRQKHFHSLLSLISKVQKNGLRPDTILFN 393
Query: 204 KMTEKFEKEG-LESDL---EKLK--GIFATGSIDNSIEKVASRICKVVRSDIWGDDVERQ 257
+ + G L+ + EK+K G T S N++ K +I K+ S +E
Sbjct: 394 AIINASSESGNLDQAMKIFEKMKESGCKPTASTFNTLIKGYGKIGKLEESSRL---LEMM 450
Query: 258 LRDLNVTFSNDLVKFVVDKLGDEPKKALIF-FRWAEESGFVKHDESSYNAMASVLGR--- 313
LRD + ++ +V ++ K + + +S VK D ++N +A R
Sbjct: 451 LRDEMLQPNDRTCNILVQAWCNQRKIEEAWNIVYKMQSFGVKPDAVTFNTLARAYSRIGS 510
Query: 314 ----EDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKP 369
ED I + M + + TC ++ + E ++EA+ + P
Sbjct: 511 TCTAEDMI------IPRMLHNKVKPNVRTCGTIVNGYCEEGKMEEALRFFYRMKELGVHP 564
Query: 370 SVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNK 429
++ L++ + DM +VV + E G ++++ A SVG M C +
Sbjct: 565 NLFVFNSLIKGFLNIN--DMDGVGEVVDLMEEFGVKPDVVTFSTLMNAWSSVGDMKRCEE 622
Query: 430 ILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHC 489
I + M EGG + S +A + AG+ ++A + ++ M G ++ +I G C
Sbjct: 623 IYRDMLEGGIDPDIHAFSILAKGYARAGEPEKAEQILNQMRKFGVRPNVVIYTQIISGWC 682
Query: 490 VAGDLDKAADCFQKMVEKEGTS 511
AG++ KA + KM G S
Sbjct: 683 SAGEMKKAMQVYNKMRGSVGLS 704
Score = 40.4 bits (93), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 24/105 (22%), Positives = 52/105 (49%), Gaps = 1/105 (0%)
Query: 454 SSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHA 513
S +G D+A + + M+ SG + +LIKG+ G L++++ + M+ E
Sbjct: 400 SESGNLDQAMKIFEKMKESGCKPTASTFNTLIKGYGKIGKLEESSRLLEMMLRDEMLQPN 459
Query: 514 GYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIK 558
++LV +C++ + +A V+ ++ + +KP T+ L +
Sbjct: 460 DRTCNILVQAWCNQRKIEEAWNIVYK-MQSFGVKPDAVTFNTLAR 503
>gi|222629097|gb|EEE61229.1| hypothetical protein OsJ_15269 [Oryza sativa Japonica Group]
Length = 855
Score = 63.9 bits (154), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 80/352 (22%), Positives = 147/352 (41%), Gaps = 32/352 (9%)
Query: 283 KALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKV 342
KA + GFV D S+Y+ + + L +++ + + EM+ G ++ T +
Sbjct: 271 KAFQLIKEMMRKGFVP-DTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTPDVYTYTIL 329
Query: 343 LGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMR--LFSKVVRVFR 400
+ F + ++++A L+E + P+V T L+ + +KQ+ +F ++V
Sbjct: 330 IDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDAGC 389
Query: 401 ENGNVLTDAMLNSVLKA------------LISVGRMGECNKILKAMEEGGFIASSNMKSK 448
+V A+++ + KA LI + + + +
Sbjct: 390 RPNDVTYGALVDGLCKAGNISKAFEVYAKLIGTSDSADSDFYFPCEDRHTLAPNVVTYGA 449
Query: 449 IAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKE 508
+ L A K D A+E +D M +SG + ++ +LI G C AG +D A + F +M
Sbjct: 450 LVDGLCKAHKVDHAHELLDAMLSSGCEPNHIVYDALIDGFCKAGKIDSAQEVFLQM---- 505
Query: 509 GTSHAGYAIDLLVNTYCS------KNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLV 562
+ GY V+TY S K+ +D V + + + P TY +I L
Sbjct: 506 --TKCGYLPS--VHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCTPNVVTYTAMIDGLCR 561
Query: 563 QRGFKDALSLLCLMKDHGFPPFVDPF---IKYVSKSGTSDDAIAFLKGMTSK 611
+ AL LL LM++ G P V + I + K+G D ++ M+ K
Sbjct: 562 IGESEKALKLLSLMEEKGCSPNVVTYTALIDGLGKAGKIDLSLDLFTQMSRK 613
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 54/215 (25%), Positives = 92/215 (42%), Gaps = 10/215 (4%)
Query: 287 FFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRF 346
F+ E+ + + +Y A+ L + +D ++LD M S G E ++ F
Sbjct: 430 FYFPCEDRHTLAPNVVTYGALVDGLCKAHKVDHAHELLDAMLSSGCEPNHIVYDALIDGF 489
Query: 347 SERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLD--MRLFSKVVRVFRENGN 404
+ + A +++ C PSV+ T L+ ++ +LD M++ S++++
Sbjct: 490 CKAGKIDSAQEVFLQMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCTPNV 549
Query: 405 VLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAF--RLSSAGKKDEA 462
V AM++ L +G + K+L MEE G S N+ + A L AGK D +
Sbjct: 550 VTYTAMID----GLCRIGESEKALKLLSLMEEKG--CSPNVVTYTALIDGLGKAGKIDLS 603
Query: 463 NEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKA 497
+ M G + LI C AG LDKA
Sbjct: 604 LDLFTQMSRKGCSPNYVTYRVLINHLCAAGLLDKA 638
Score = 41.6 bits (96), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 37/156 (23%), Positives = 64/156 (41%), Gaps = 2/156 (1%)
Query: 405 VLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANE 464
VL + + + L VG+ + +++K M GF+ ++ SK+ L A K ++A
Sbjct: 250 VLNKVNVANFARCLCGVGKFDKAFQLIKEMMRKGFVPDTSTYSKVITFLCHATKVEKAFL 309
Query: 465 FMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTY 524
M+ G + LI C AG +++A F++M G S L++ Y
Sbjct: 310 LFQEMKMVGVTPDVYTYTILIDSFCKAGLIEQAQWLFEEM-RSVGCSPTVVTYTALIHAY 368
Query: 525 CSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNL 560
+ A H V + +P TY L+ L
Sbjct: 369 LKAKQVPQANDIFHRMV-DAGCRPNDVTYGALVDGL 403
>gi|449475988|ref|XP_004154607.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g79540-like [Cucumis sativus]
Length = 950
Score = 63.9 bits (154), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 74/336 (22%), Positives = 146/336 (43%), Gaps = 14/336 (4%)
Query: 273 VVDKLGDEPKKALIF--FRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSK 330
+ L ++P L F F W+ +S ++ + + + L +E+ + +WKVL E+++
Sbjct: 64 ITSVLQEQPDTRLGFRLFIWSLKSWHLRC-RTVQDLIIGKLIKENAFELYWKVLQELKNS 122
Query: 331 GYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQ--LD 388
++ E ++ +SE M ++AV+ + KP + +L +V + L
Sbjct: 123 AIKISSEAFSVLIEAYSEAGMDEKAVESFSLMRDFDCKPDLFAFNLILHFLVRKEAFLLA 182
Query: 389 MRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSK 448
+ +++++++ N +V+T +L + L + + + M + G + + + S
Sbjct: 183 LAVYNQMLKC-NLNPDVVTYGIL---IHGLCKTCKTQDALVLFDEMTDRGILPNQIIYSI 238
Query: 449 IAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKE 508
+ L A K +A M ASG + + L+ G C +G LD A Q ++ K+
Sbjct: 239 VLSGLCQAKKIFDAQRLFSKMRASGCNRDLITYNVLLNGFCKSGYLDDAFTLLQ-LLTKD 297
Query: 509 GTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKD 568
G L+N R +A + +RE ++KP Y +I+ L + +
Sbjct: 298 GHILGVIGYGCLINGLFRARRYEEAHMWYQKMLRE-NIKPDVMLYTIMIRGLSQEGRVTE 356
Query: 569 ALSLLCLMKDHGFPP---FVDPFIKYVSKSGTSDDA 601
AL+LL M + G P + IK G D+A
Sbjct: 357 ALTLLGEMTERGLRPDTICYNALIKGFCDMGYLDEA 392
>gi|225439731|ref|XP_002272943.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
chloroplastic [Vitis vinifera]
Length = 772
Score = 63.9 bits (154), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 78/363 (21%), Positives = 151/363 (41%), Gaps = 19/363 (5%)
Query: 282 KKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVK 341
++ L F GF + D ++N++ + L R + ++LD M +G++ ++ T
Sbjct: 298 EEVLSFIDEMSNEGF-RPDRFTFNSLVNGLCRIGHVKHALEILDVMLQEGFDPDIFTYNS 356
Query: 342 VLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRE 401
++ + V+EAV++ + P+ L+ + Q++ +++ RV
Sbjct: 357 LIFGLCKLGEVEEAVEILNQMILRDFSPNTVTYNTLISTLCKENQVEEA--TELARVLTS 414
Query: 402 NGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDE 461
G + NS+++ L ++ + M+ G + + L S G+ +E
Sbjct: 415 KGILPDVCTFNSLIQGLCLTNNHRLAMELFEEMKTKGCHPDEFTYNMLIDSLCSRGRLEE 474
Query: 462 ANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLV 521
A + ME+SG + +LI G C +++A + F +M E +G S + L+
Sbjct: 475 ALSLLKEMESSGCSRNVVTYNTLIDGFCKNKRIEEAEEIFDEM-ELQGISRNVVTYNTLI 533
Query: 522 NTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGF 581
+ C R +A + + + E LKP TY L+ K A ++ M +G
Sbjct: 534 DGLCKNRRVEEAAQLMDQMLME-GLKPDKFTYNSLLTYFCRAGDIKKAADIVQTMTSNGC 592
Query: 582 PP---FVDPFIKYVSKSGTSDDAIAFLKGMTSKRFPSMSVVLC------LFAAFFQARRH 632
P I +SK+G + A L+ + K +VL + A F+ +R
Sbjct: 593 EPDSVTYGTLILGLSKAGRVELASRLLRTVQLK-----GMVLAPQTYNPVIKALFREKRT 647
Query: 633 SEA 635
SEA
Sbjct: 648 SEA 650
Score = 58.9 bits (141), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 78/359 (21%), Positives = 153/359 (42%), Gaps = 18/359 (5%)
Query: 292 EESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNM 351
EE +K D +YN + +VL + + V M S+G + ++ T ++ +
Sbjct: 167 EEEFGLKLDAFTYNFLLNVLVDGNKLKLVEIVNSRMVSRGIKPDVTTFNILIKALCRAHQ 226
Query: 352 VKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLD--MRLFSKVVRVFRENGNVLTDA 409
++ A+ + E + P T L++ + ++ +R+ ++V + NV +
Sbjct: 227 IRPAILMMEEMGSYGLSPDEKTFTTLMQGFIEEGNMNGALRIREQMVAAGCPSSNVTVNV 286
Query: 410 MLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHM 469
+++ K GR+ E + M GF + + L G A E +D M
Sbjct: 287 LVHGYCKE----GRIEEVLSFIDEMSNEGFRPDRFTFNSLVNGLCRIGHVKHALEILDVM 342
Query: 470 EASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNR 529
G D + SLI G C G++++A + +M+ ++ + + + L++T C +N+
Sbjct: 343 LQEGFDPDIFTYNSLIFGLCKLGEVEEAVEILNQMILRDFSPNT-VTYNTLISTLCKENQ 401
Query: 530 AIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPF- 588
+A + + + P T+ LI+ L + + A+ L MK G P D F
Sbjct: 402 VEEATELAR-VLTSKGILPDVCTFNSLIQGLCLTNNHRLAMELFEEMKTKGCHP--DEFT 458
Query: 589 ----IKYVSKSGTSDDAIAFLKGMTSKRFPSMSVVL--CLFAAFFQARRHSEAQDLLSK 641
I + G ++A++ LK M S S +VV L F + +R EA+++ +
Sbjct: 459 YNMLIDSLCSRGRLEEALSLLKEMESSGC-SRNVVTYNTLIDGFCKNKRIEEAEEIFDE 516
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 90/389 (23%), Positives = 153/389 (39%), Gaps = 61/389 (15%)
Query: 282 KKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVK 341
K AL + GF D +YN++ L + ++ ++L++M + + T
Sbjct: 333 KHALEILDVMLQEGF-DPDIFTYNSLIFGLCKLGEVEEAVEILNQMILRDFSPNTVTYNT 391
Query: 342 VLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTF--LLRKIVVSK--QLDMRLFSKVVR 397
++ + N V+EA +L + P V CTF L++ + ++ +L M LF ++
Sbjct: 392 LISTLCKENQVEEATELARVLTSKGILPDV--CTFNSLIQGLCLTNNHRLAMELFEEM-- 447
Query: 398 VFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAG 457
+ G + N ++ +L S GR+ E +LK ME G + + +
Sbjct: 448 --KTKGCHPDEFTYNMLIDSLCSRGRLEEALSLLKEMESSGCSRNVVTYNTLIDGFCKNK 505
Query: 458 KKDEANEFMDHMEASG------------------------SDVGDKMWV----------- 482
+ +EA E D ME G + + D+M +
Sbjct: 506 RIEEAEEIFDEMELQGISRNVVTYNTLIDGLCKNRRVEEAAQLMDQMLMEGLKPDKFTYN 565
Query: 483 SLIKGHCVAGDLDKAADCFQKMV----EKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVH 538
SL+ C AGD+ KAAD Q M E + ++ + L SK ++ +
Sbjct: 566 SLLTYFCRAGDIKKAADIVQTMTSNGCEPDSVTYGTLILGL------SKAGRVELASRLL 619
Query: 539 NCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPP----FVDPFIKYVSK 594
V+ + TY +IK L ++ +A+ L M + G PP + F S
Sbjct: 620 RTVQLKGMVLAPQTYNPVIKALFREKRTSEAVRLFREMMEKGDPPDAVTYKVVFRGLCSG 679
Query: 595 SGTSDDAIAFLKGMTSKRF-PSMSVVLCL 622
G +A+ FL MT K F P S L L
Sbjct: 680 GGPIGEAVDFLVEMTDKGFLPDFSSFLML 708
Score = 40.8 bits (94), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 38/191 (19%), Positives = 80/191 (41%), Gaps = 4/191 (2%)
Query: 433 AMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAG 492
A ++ F+ SS + ++ +L G + M+ +G ++ ++ LI+ +
Sbjct: 95 ASKQPNFVPSSVIYEEVLRKLGKDGSFGSMRRVLQEMKHTGCEIRRGTFLILIESYAKFE 154
Query: 493 DLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTT 552
D+A M E+ G + + L+N N+ + + V++ + +KP TT
Sbjct: 155 LFDEAVAVVDIMEEEFGLKLDAFTYNFLLNVLVDGNK-LKLVEIVNSRMVSRGIKPDVTT 213
Query: 553 YEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPFIKYVS---KSGTSDDAIAFLKGMT 609
+ LIK L + A+ ++ M +G P F + + G + A+ + M
Sbjct: 214 FNILIKALCRAHQIRPAILMMEEMGSYGLSPDEKTFTTLMQGFIEEGNMNGALRIREQMV 273
Query: 610 SKRFPSMSVVL 620
+ PS +V +
Sbjct: 274 AAGCPSSNVTV 284
>gi|255579531|ref|XP_002530608.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223529856|gb|EEF31788.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 596
Score = 63.9 bits (154), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 67/288 (23%), Positives = 112/288 (38%), Gaps = 35/288 (12%)
Query: 254 VERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGR 313
+E L++ VT L + V+++ GD FF WA + +H +Y AM + +
Sbjct: 93 LELALQESGVTMRAGLTERVLNRCGDAGNLGYRFFVWASKQPGYRHSYENYKAMVKIFSK 152
Query: 314 EDCIDRFWKVLDEMRS-KGYEMEMETCVKVLGRFSERNMVKEAV-------------DLY 359
W +L+EMR + E + ++ RF+ +V++A+ D Y
Sbjct: 153 MRQFGAVWALLEEMRKDNSVLITSELFIVLIRRFASARLVEKAIEVLDEMPKYGCEPDEY 212
Query: 360 EFA----MACKNKPSVNCCTFLLRKIVVSKQLDMRLFSK----------------VVRVF 399
F CKN SV L + V +R F+ V+
Sbjct: 213 VFGCLLDALCKNG-SVKQAASLFEDMRVRFSPSLRHFTSLLYGWCREGKLIEAKHVLVQM 271
Query: 400 RENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKK 459
RE G + N++L A G+M + +LK M G ++N + + S K
Sbjct: 272 REAGFEPDIVVFNNLLSAYSMAGKMTDAFDLLKEMVRKGCEPNANSYTIMIQAFCSQEKM 331
Query: 460 DEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEK 507
DEA ME +G + + +LI G C G +++ M +K
Sbjct: 332 DEAMRVFVEMERTGCEADVVTYTALISGFCKWGKINRGYQILDAMKQK 379
>gi|302780004|ref|XP_002971777.1| hypothetical protein SELMODRAFT_96029 [Selaginella moellendorffii]
gi|300160909|gb|EFJ27526.1| hypothetical protein SELMODRAFT_96029 [Selaginella moellendorffii]
Length = 556
Score = 63.9 bits (154), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 86/358 (24%), Positives = 149/358 (41%), Gaps = 23/358 (6%)
Query: 281 PKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCV 340
P A+ FF WA E KHD SYN + +L + R KV ++ G + T
Sbjct: 7 PDLAIQFFDWAGEQDGYKHDVHSYNHLLDILVKSGHQFRTGKVYKDLLHSGCSPNLVT-F 65
Query: 341 KVLGRFSERNMVKEAVDLYEFAMACKN---KPSVNCCTFLLRKIVVSKQLD--MRLFSKV 395
K+L R + + +A EF A P V FL+ + D ++LF
Sbjct: 66 KILIRGNCK--AGQATRALEFLRALDEFSVAPDVYIFNFLIHGLFKDGNPDQAVKLFEN- 122
Query: 396 VRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNM---KSKIAFR 452
+ R N ++ T N+V+ L G + + ++L+ M G ++ ++ + I
Sbjct: 123 MESSRVNPDIFT---YNTVISGLCKSGNLEKARELLEEMIRRGGKSAPDIVTYNTLINAG 179
Query: 453 LSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSH 512
+ G +EA E +D M+ +G + S+I CVAG + +AA+ + M S
Sbjct: 180 ICKDGDVEEALEILDGMKLAGPAPDVITYNSIIHALCVAGRVVEAAEILKTM----SCSP 235
Query: 513 AGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSL 572
+ L++ +C A + + RE ++ P TY L+ L + A L
Sbjct: 236 DLVTFNTLLDGFCKAGMLPRALEVLEEMCRE-NILPDVITYTILVNGLCRVGQVQVAFYL 294
Query: 573 LCLMKDHGFPPFVDPFIKYVS---KSGTSDDAIAFLKGMTSKRFPSMSVVLCLFAAFF 627
L + G+ P V + V KSG ++A +K M+++ + V + + F
Sbjct: 295 LEEIVRQGYIPDVIAYTSLVDGLCKSGEIEEAHKLVKEMSAREILAEMVSINMVPPLF 352
Score = 41.2 bits (95), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 96/458 (20%), Positives = 183/458 (39%), Gaps = 58/458 (12%)
Query: 141 ESSPDEARRFFNWVLEKESERLSSK--TYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVA 198
+ +PD+A + F ES R++ TYN ++ + G +++ L++ M ++G A
Sbjct: 110 DGNPDQAVKLFE---NMESSRVNPDIFTYNTVISGLCKSGNLEKARELLEEMIRRGGKSA 166
Query: 199 SHV---RNKMTEKFEKEG-LESDLEKLKGIFATGSIDNSI--EKVASRICKVVRSDIWGD 252
+ + K+G +E LE L G+ G + I + +C + G
Sbjct: 167 PDIVTYNTLINAGICKDGDVEEALEILDGMKLAGPAPDVITYNSIIHALC------VAGR 220
Query: 253 DVERQLRDLNVTFSNDLVKF--VVD---KLGDEPKKALIFFRWAEESGFVKHDESSYNAM 307
VE ++ S DLV F ++D K G P+ + E+ + D +Y +
Sbjct: 221 VVEAAEILKTMSCSPDLVTFNTLLDGFCKAGMLPRALEVLEEMCREN--ILPDVITYTIL 278
Query: 308 ASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKN 367
+ L R + + +L+E+ +GY ++ ++ + ++EA L + A
Sbjct: 279 VNGLCRVGQVQVAFYLLEEIVRQGYIPDVIAYTSLVDGLCKSGEIEEAHKLVKEMSA--- 335
Query: 368 KPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGEC 427
R+I+ +M + V +F N VL LI G + +
Sbjct: 336 -----------REILA----EMVSINMVPPLF----------TYNIVLGGLIKDGSISKA 370
Query: 428 NKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKG 487
++ + G++ + + L A + EA + D M + G D S++ G
Sbjct: 371 VSLISDLVARGYVPDVVTYNTLIDGLCKANRVREACDLADEMASLGCFPNDVTLGSVVFG 430
Query: 488 HCVAGDLDKAADCFQKMVEKEGTSHAGYAI--DLLVNTYCSKNRAIDACKFVHNCVREYD 545
C G +D D + +VE HA + L++ C +R DAC V + +R
Sbjct: 431 LCRVGRVD---DAWSLVVEMSRKRHAPNVVVYTSLIDGLCKSDRMDDAC-VVLDAMRGQG 486
Query: 546 LKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPP 583
+ Y +LI +++ +A+++ M GF P
Sbjct: 487 VALDDFAYRKLIVSMIHGGRVAEAMAMYDEMVARGFLP 524
>gi|224080263|ref|XP_002306075.1| predicted protein [Populus trichocarpa]
gi|222849039|gb|EEE86586.1| predicted protein [Populus trichocarpa]
Length = 498
Score = 63.9 bits (154), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 69/311 (22%), Positives = 126/311 (40%), Gaps = 23/311 (7%)
Query: 317 IDRFWKVLDEMRSKGYEMEMETCVKVL-------GRFSERNMVKEAVDLYEFAMACKNK- 368
ID +++ +RSKG + TC ++ G F + KE L + K +
Sbjct: 180 IDGSIEIVKMLRSKGISPSISTCNALISEVSRCKGSFVGYGVFKEVFGLESCELGEKMRR 239
Query: 369 -----PSVNCCTFLLRKIVVSKQLDM--RLFSKVVRVFRENGNVLTDAMLNSVLKALISV 421
P+V+ L+ + +++M ++S++ R G V ++
Sbjct: 240 GFRVRPNVHSFNELMVGFYRNGEVEMVEEIWSEMERF----GCVANGFSYGVLIAVFCEG 295
Query: 422 GRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMW 481
GR+ E ++ M G + + I AG+ ++A M SG + +
Sbjct: 296 GRLSEAERLWDEMRVKGIMPDVVAYNTIIGGFCKAGEVEKAEGLFREMGLSGIESSCVTF 355
Query: 482 VSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCV 541
LI+G+C GD++ A ++ M ++ A +++L+ C + R +A K + + +
Sbjct: 356 EHLIEGYCRIGDVNSAILVYKDMRRRDFRLEA-LTMEVLIGGLCEQKRVFEALKIMRSAM 414
Query: 542 REYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPP---FVDPFIKYVSKSGTS 598
R+ P +YE LI L ++AL L M GF P FI+ K G
Sbjct: 415 RDVSFHPNGKSYELLINGLCEDGKMEEALKLQSEMVGKGFDPNSAIYGAFIEGYVKLGNE 474
Query: 599 DDAIAFLKGMT 609
+ A K M+
Sbjct: 475 EMAAMLRKEMS 485
>gi|449481246|ref|XP_004156125.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
repeat-containing protein At2g02150-like [Cucumis
sativus]
Length = 822
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 76/354 (21%), Positives = 151/354 (42%), Gaps = 18/354 (5%)
Query: 300 DESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLY 359
+E +Y ++ + + WK+L++M G ++ + T +L + + EA +++
Sbjct: 369 NEFTYTSLIDANCKAGNLTEAWKLLNDMLQAGVKLNIVTYTALLDGLCKAGRMIEAEEVF 428
Query: 360 EFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAML-NSVLKAL 418
+ P+ T L+ + +++++ + K+++ E N+ D +L S++
Sbjct: 429 RSMLKDGISPNQQVYTALVHGYIKAERMEDAM--KILKQMTE-CNIKPDLILYGSIIWGH 485
Query: 419 ISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGD 478
S ++ E IL+ M+ G A+ + + I AGK +A F M+ G +
Sbjct: 486 CSQRKLEETKLILEEMKSRGISANPVISTTIIDAYFKAGKSSDALNFFQEMQDVGVEATI 545
Query: 479 KMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVH 538
+ LI G C AG ++ A D F +M+ G L++ C N I++ K +
Sbjct: 546 VTYCVLIDGLCEAGIVELAVDYFCRMLSL-GLQPNVAVYTSLIDGLCXNN-CIESAKKLF 603
Query: 539 NCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKD-------HGFPPFVDPFIKY 591
+ ++ + P T + LI L ++AL L+ M + H + V F
Sbjct: 604 DEMQCRGMTPDITAFTALIDGNLKHGNLQEALVLISRMTELAIEFDLHVYTSLVSGF--- 660
Query: 592 VSKSGTSDDAIAFLKGMTSKR-FPSMSVVLCLFAAFFQARRHSEAQDLLSKCPR 644
S+ G A F M K P + +CL +++ + EA +L ++ R
Sbjct: 661 -SQCGELHQARKFFNEMIEKGILPEEVLCICLLREYYKRGQLDEAIELKNEMER 713
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 89/428 (20%), Positives = 155/428 (36%), Gaps = 39/428 (9%)
Query: 243 KVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDK----LGDEPKKALIFFRWAEESGFVK 298
K+++ D+W D + V F + L V K L ++PK AL FF+WA +
Sbjct: 48 KIIQQDLWNDP------KIVVLFDSALAPIWVSKILLGLREDPKLALKFFKWAGSQVGFR 101
Query: 299 HDESSYNAMASVLGR----EDCIDRFWKVLDEMR-------SKGYEMEMET---CVKVLG 344
H SY + ++ R D D +V+ R ++M T CV G
Sbjct: 102 HTTESYCIIVHLVFRARMYTDAHDTVKEVIMNSRMDMGFPVCNIFDMLWSTRNICVSGSG 161
Query: 345 RFS-------ERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVR 397
F E +++EA + + + P C FLL ++ SK + +L K
Sbjct: 162 VFDVLFSVFVELGLLEEANECFSRMRNFRTLPKARSCNFLLHRL--SKSGNGQLVRKFFN 219
Query: 398 VFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAG 457
G + N ++ L G + ++ M E G + + G
Sbjct: 220 DMIGAGIAPSVFTYNVMIDYLCKEGDLENSRRLFVQMREMGLSPDVVTYNSLIDGYGKVG 279
Query: 458 KKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAI 517
+E + M+ G + LI +C + +A + F +M + G
Sbjct: 280 SLEEVASLFNEMKDVGCVPDIITYNGLINCYCKFEKMPRAFEYFSEM-KNNGLKPNVVTY 338
Query: 518 DLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMK 577
L++ +C + A K + + +R L P TY LI +A LL M
Sbjct: 339 STLIDAFCKEGMMQGAIKLLXD-MRRTGLLPNEFTYTSLIDANCKAGNLTEAWKLLNDML 397
Query: 578 DHGFPPFVDPF---IKYVSKSGTSDDAIAFLKGMTSKRF-PSMSVVLCLFAAFFQARRHS 633
G + + + + K+G +A + M P+ V L + +A R
Sbjct: 398 QAGVKLNIVTYTALLDGLCKAGRMIEAEEVFRSMLKDGISPNQQVYTALVHGYIKAERME 457
Query: 634 EAQDLLSK 641
+A +L +
Sbjct: 458 DAMKILKQ 465
>gi|302821741|ref|XP_002992532.1| hypothetical protein SELMODRAFT_135367 [Selaginella moellendorffii]
gi|300139734|gb|EFJ06470.1| hypothetical protein SELMODRAFT_135367 [Selaginella moellendorffii]
Length = 759
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 93/381 (24%), Positives = 152/381 (39%), Gaps = 32/381 (8%)
Query: 232 NSIEKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKF--VVD---KLGDEPKKALI 286
N++ +S IC RS VE + V +LV + V+D K GD P AL
Sbjct: 153 NNVFVYSSLICAYGRSGKLAKAVE-IFEAMKVVCKPNLVVYNAVIDACSKGGDYPT-ALR 210
Query: 287 FFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRF 346
FR E G + D ++N + S GR + + ++ EM +G + T ++ +
Sbjct: 211 IFREMLEQG-MSPDRITFNTLISAAGRANRWEECDRIFAEMEERGIARDDVTYNTLIATY 269
Query: 347 SERNMVKEAVDLYE-FAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRE--NG 403
+ L E A + +PSV + ++ + L + + +F+E N
Sbjct: 270 CRGGQMHLGAALMETMAKSSGIEPSV-----ITYSTMIDGYAKLGLAHEAIALFQEMRNQ 324
Query: 404 NVLTDAM-LNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEA 462
NV D + N+++ +G E + I +AMEE GF + + GK EA
Sbjct: 325 NVEPDGICYNTMVDIHARLGNFDEAHSIRRAMEEAGFAKDIVTYNALLDSYGKQGKFREA 384
Query: 463 NEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVN 522
++ M+ G+ + +LI +C G A FQ V+K G LV+
Sbjct: 385 MSLLEEMKQRGASPNILTYSALIDAYCKHGFHRDAMALFQD-VKKAGLQPDVVLYSTLVD 443
Query: 523 TYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFP 582
C KN + D + + + ++P TY L+ DA CLM FP
Sbjct: 444 G-CCKNGSPDEALALLEEMADNGIRPNVITYNSLL----------DAYGRQCLMVRKTFP 492
Query: 583 P---FVDPFIKYVSKSGTSDD 600
F+ P + + K DD
Sbjct: 493 KLRFFLLPRVTMLLKPSMQDD 513
>gi|297805766|ref|XP_002870767.1| EMB2745 [Arabidopsis lyrata subsp. lyrata]
gi|297316603|gb|EFH47026.1| EMB2745 [Arabidopsis lyrata subsp. lyrata]
Length = 747
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 66/283 (23%), Positives = 118/283 (41%), Gaps = 4/283 (1%)
Query: 303 SYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFA 362
SYN + + L RE + VL EM +GY ++ T ++ + + +A+ ++
Sbjct: 277 SYNVVINGLCREGRMKEISFVLTEMNKRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEM 336
Query: 363 MACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVG 422
+ PSV T L+ + K +M ++ + R G + +++ G
Sbjct: 337 LRHGLSPSVITYTSLIHSMC--KAGNMNRATEFLDQMRVRGLCPNERTYTTLVDGFSQKG 394
Query: 423 RMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWV 482
M E ++LK M + GF S + + AGK +A ++ M+ G +
Sbjct: 395 YMNEAYRVLKEMIDNGFSPSVVTYNALINGHCIAGKMVDAIAVLEDMKEKGLTPDVVSYS 454
Query: 483 SLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVR 542
+++ G C + D+D+A +KMV K G L+ +C + R +AC +R
Sbjct: 455 TVLSGFCRSYDVDEALRVKRKMVAK-GIKPDTITYSSLIQGFCEQRRTKEACDLFDEMLR 513
Query: 543 EYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFV 585
L P TY LI ++ + A+ L M + G P V
Sbjct: 514 -VGLPPDEFTYTALINAYCMEGDLQKAIQLHNEMVEKGVLPDV 555
Score = 55.5 bits (132), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 65/293 (22%), Positives = 105/293 (35%), Gaps = 43/293 (14%)
Query: 389 MRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSK 448
M+ S V+ + G L + N+++K G + + M G S +
Sbjct: 291 MKEISFVLTEMNKRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLSPSVITYTS 350
Query: 449 IAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKE 508
+ + AG + A EF+D M G ++ + +L+ G G +++A ++M++
Sbjct: 351 LIHSMCKAGNMNRATEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLKEMIDN- 409
Query: 509 GTSHAGYAIDLLVNTYCSKNRAIDACKFVHNC-------------------VREYD---- 545
G S + + L+N +C + +DA + + R YD
Sbjct: 410 GFSPSVVTYNALINGHCIAGKMVDAIAVLEDMKEKGLTPDVVSYSTVLSGFCRSYDVDEA 469
Query: 546 -----------LKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPF-----I 589
+KP TY LI+ QR K+A L M G PP D F I
Sbjct: 470 LRVKRKMVAKGIKPDTITYSSLIQGFCEQRRTKEACDLFDEMLRVGLPP--DEFTYTALI 527
Query: 590 KYVSKSGTSDDAIAFLKGMTSKR-FPSMSVVLCLFAAFFQARRHSEAQDLLSK 641
G AI M K P + L + R EA+ LL K
Sbjct: 528 NAYCMEGDLQKAIQLHNEMVEKGVLPDVVTYSVLINGLNKQARTREAKRLLLK 580
Score = 48.1 bits (113), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 49/188 (26%), Positives = 74/188 (39%), Gaps = 6/188 (3%)
Query: 456 AGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGY 515
AG D A F D ME G + +LI G+C +D + + M K G
Sbjct: 218 AGNLDVALRFFDRMEKKGCLPNVVTYNTLIDGYCKLRKIDDGFELLRSMALK-GLEPNLI 276
Query: 516 AIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCL 575
+ ++++N C + R + FV + + TY LIK + F AL +
Sbjct: 277 SYNVVINGLCREGR-MKEISFVLTEMNKRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAE 335
Query: 576 MKDHGFPPFVDPF---IKYVSKSGTSDDAIAFLKGMTSKRF-PSMSVVLCLFAAFFQARR 631
M HG P V + I + K+G + A FL M + P+ L F Q
Sbjct: 336 MLRHGLSPSVITYTSLIHSMCKAGNMNRATEFLDQMRVRGLCPNERTYTTLVDGFSQKGY 395
Query: 632 HSEAQDLL 639
+EA +L
Sbjct: 396 MNEAYRVL 403
Score = 48.1 bits (113), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 60/272 (22%), Positives = 109/272 (40%), Gaps = 7/272 (2%)
Query: 303 SYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFA 362
+Y ++ + + ++R + LD+MR +G T ++ FS++ + EA + +
Sbjct: 347 TYTSLIHSMCKAGNMNRATEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLKEM 406
Query: 363 MACKNKPSVNCCTFLLR-KIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISV 421
+ PSV L+ + K +D V+ +E G ++VL
Sbjct: 407 IDNGFSPSVVTYNALINGHCIAGKMVDA---IAVLEDMKEKGLTPDVVSYSTVLSGFCRS 463
Query: 422 GRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMW 481
+ E ++ + M G + S + + EA + D M G + +
Sbjct: 464 YDVDEALRVKRKMVAKGIKPDTITYSSLIQGFCEQRRTKEACDLFDEMLRVGLPPDEFTY 523
Query: 482 VSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCV 541
+LI +C+ GDL KA +MVEK G +L+N + R +A + +
Sbjct: 524 TALINAYCMEGDLQKAIQLHNEMVEK-GVLPDVVTYSVLINGLNKQARTREAKRLLLKLF 582
Query: 542 REYDLKPWHTTYEELIKNLLVQRGFKDALSLL 573
E + P TY LI+N FK +SL+
Sbjct: 583 YEESV-PSDVTYHTLIEN-CSNIEFKSVVSLI 612
Score = 43.1 bits (100), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 63/279 (22%), Positives = 117/279 (41%), Gaps = 46/279 (16%)
Query: 284 ALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVL 343
A+ +E G D SY+ + S R +D +V +M +KG + + T ++
Sbjct: 434 AIAVLEDMKEKGLTP-DVVSYSTVLSGFCRSYDVDEALRVKRKMVAKGIKPDTITYSSLI 492
Query: 344 GRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLD--MRLFSKVVRVFRE 401
F E+ KEA DL++ + P T L+ + L ++L +++V E
Sbjct: 493 QGFCEQRRTKEACDLFDEMLRVGLPPDEFTYTALINAYCMEGDLQKAIQLHNEMV----E 548
Query: 402 NGNVLTDAMLNSVL-KALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKD 460
G VL D + SVL L R E ++L + ++ S + +
Sbjct: 549 KG-VLPDVVTYSVLINGLNKQARTREAKRLLLKL-----FYEESVPSDVTYHT------- 595
Query: 461 EANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLL 520
+ + S++ K VSLIKG C+ G + +A F+ M+EK G A +++
Sbjct: 596 --------LIENCSNIEFKSVVSLIKGFCMKGMMTEADQVFESMLEKNHKPD-GTAYNVM 646
Query: 521 VNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKN 559
++ +C R D++ ++ Y+E++K+
Sbjct: 647 IHGHC----------------RGGDIRKAYSLYKEMVKS 669
>gi|359485815|ref|XP_003633341.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g65560-like [Vitis vinifera]
Length = 822
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 73/346 (21%), Positives = 139/346 (40%), Gaps = 8/346 (2%)
Query: 300 DESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLY 359
D +Y ++ R +D + V D M +G + T ++ V EA+D+
Sbjct: 232 DVFTYTSLILGHCRNRNLDLAFGVFDRMVKEGCDPNSVTYSTLINGLCNEGRVDEALDML 291
Query: 360 EFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALI 419
E + +P+V T+ L + ++V ++ G +++ L
Sbjct: 292 EEMIEKGIEPTVY--TYTLPITALCAIEHEEEAIELVARMKKRGCRPNVQTYTALISGLS 349
Query: 420 SVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDK 479
+G++ + M + G + ++ + + L G+ A + ME GS +
Sbjct: 350 RLGKLEVAIGLYHKMLKEGLVPNTVTYNALINELCVGGRFSTALKIFHWMEGHGSLANTQ 409
Query: 480 MWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHN 539
+ +IKG C+ GD++KA F+KM+ K G + L+N Y +K +A + + +
Sbjct: 410 TYNEIIKGLCLGGDIEKAMVLFEKML-KMGPLPTVVTYNTLINGYLTKGNVNNAARLL-D 467
Query: 540 CVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPFIKYV---SKSG 596
++E +P TY EL+ + A M + G P + + SK G
Sbjct: 468 LMKENGCEPDEWTYNELVSGFSKWGKLESASFYFQEMVECGLNPNPVSYTALIDGHSKDG 527
Query: 597 TSDDAIAFLKGMTSKRF-PSMSVVLCLFAAFFQARRHSEAQDLLSK 641
D A++ LK M P++ + + R SEA+ + K
Sbjct: 528 KVDIALSLLKRMEEMGCNPNVESYNAVINGLSKENRFSEAEKICDK 573
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 78/380 (20%), Positives = 144/380 (37%), Gaps = 64/380 (16%)
Query: 225 FATGSIDNSIEKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKA 284
FA + + + SR+C ++ W E L+ L+ V +V + + +
Sbjct: 35 FAVPASREPFQAIVSRVCAILSRVQWKGSSE--LKQLSPQLKAHHVAEIV-AVHKDTESV 91
Query: 285 LIFFRWAEESGFVKHDESSYNAMASVLGR--------------------EDCIDRFWKVL 324
+ FF W + F KH+ + + +M + L R E+ I R L
Sbjct: 92 IQFFYWISKRPFYKHNMNCFISMLNRLVRDRVFAPADHIRILMIKACRNEEEIRRVADFL 151
Query: 325 DEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVS 384
+E+ G+ + +C +L + ++ MV+ A +LY+ + +PS
Sbjct: 152 NEISGMGFGFSLYSCNTLLIQLAKFEMVEGARNLYKQMLNSGIQPS-------------- 197
Query: 385 KQLDMRLFSKVVRVFRENGNVL-TDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASS 443
+ F+ ++ + + G V + +L+ + + +S + IL G +
Sbjct: 198 ----LLTFNTLINILSKKGKVREAELILSQIFQYDLSPDVFTYTSLIL------GHCRNR 247
Query: 444 NMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQK 503
N+ D A D M G D + +LI G C G +D+A D ++
Sbjct: 248 NL--------------DLAFGVFDRMVKEGCDPNSVTYSTLINGLCNEGRVDEALDMLEE 293
Query: 504 MVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQ 563
M+EK G Y L + C+ +A + V +++ +P TY LI L
Sbjct: 294 MIEK-GIEPTVYTYTLPITALCAIEHEEEAIELVAR-MKKRGCRPNVQTYTALISGLSRL 351
Query: 564 RGFKDALSLLCLMKDHGFPP 583
+ A+ L M G P
Sbjct: 352 GKLEVAIGLYHKMLKEGLVP 371
Score = 48.5 bits (114), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 107/511 (20%), Positives = 189/511 (36%), Gaps = 63/511 (12%)
Query: 141 ESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASH 200
E DEA ++EK E + TY L + + +E LV MKK+G
Sbjct: 281 EGRVDEALDMLEEMIEKGIEP-TVYTYTLPITALCAIEHEEEAIELVARMKKRGCRPNVQ 339
Query: 201 VRNKMTEKFEKEG-LESDLEKLKGIFATGSIDNSIEK--------VASRICKVVRSDIWG 251
+ + G LE + + G + N++ V R ++ W
Sbjct: 340 TYTALISGLSRLGKLEVAIGLYHKMLKEGLVPNTVTYNALINELCVGGRFSTALKIFHW- 398
Query: 252 DDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVL 311
+E N N+++K + LG + +KA++ F + G + +YN + +
Sbjct: 399 --MEGHGSLANTQTYNEIIKGLC--LGGDIEKAMVLFEKMLKMGPLP-TVVTYNTLINGY 453
Query: 312 GREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSV 371
+ ++ ++LD M+ G E + T +++ FS+ ++ A ++ + C P+
Sbjct: 454 LTKGNVNNAARLLDLMKENGCEPDEWTYNELVSGFSKWGKLESASFYFQEMVECGLNPNP 513
Query: 372 NCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKIL 431
T L+ ++D+ L +L
Sbjct: 514 VSYTALIDGHSKDGKVDIAL-------------------------------------SLL 536
Query: 432 KAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVA 491
K MEE G + + + LS + EA + D M G + +LI G C
Sbjct: 537 KRMEEMGCNPNVESYNAVINGLSKENRFSEAEKICDKMVEQGLLPNVITYTTLIDGLCRN 596
Query: 492 GDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHT 551
G A F M EK Y L+ C + +A +A + + E +P
Sbjct: 597 GRTQFAFKIFHDM-EKRKCLPNLYTYSSLIYGLCQEGKADEAER-----MSEIGCEPTLD 650
Query: 552 TYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPFIKYV---SKSGTSDDAIAFLKGM 608
TY L+ L + F +A L+ MK+ GF P + + + K+ D A+ +
Sbjct: 651 TYSTLVSGLCRKGRFYEAEQLVKDMKERGFCPDREIYYSLLIAHCKNLEVDHALKIFHSI 710
Query: 609 TSKRFP-SMSVVLCLFAAFFQARRHSEAQDL 638
+K F +S+ L A +A + EAQ L
Sbjct: 711 EAKGFQLHLSIYRALICALCKAGQVEEAQAL 741
Score = 43.9 bits (102), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 50/225 (22%), Positives = 92/225 (40%), Gaps = 7/225 (3%)
Query: 284 ALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVL 343
AL + EE G + ES YNA+ + L +E+ K+ D+M +G + T ++
Sbjct: 532 ALSLLKRMEEMGCNPNVES-YNAVINGLSKENRFSEAEKICDKMVEQGLLPNVITYTTLI 590
Query: 344 GRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENG 403
+ A ++ K P++ + L+ + + D E G
Sbjct: 591 DGLCRNGRTQFAFKIFHDMEKRKCLPNLYTYSSLIYGLCQEGKADE------AERMSEIG 644
Query: 404 NVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEAN 463
T ++++ L GR E +++K M+E GF + + + D A
Sbjct: 645 CEPTLDTYSTLVSGLCRKGRFYEAEQLVKDMKERGFCPDREIYYSLLIAHCKNLEVDHAL 704
Query: 464 EFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKE 508
+ +EA G + ++ +LI C AG +++A F M+EKE
Sbjct: 705 KIFHSIEAKGFQLHLSIYRALICALCKAGQVEEAQALFDNMLEKE 749
>gi|357118714|ref|XP_003561096.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At5g39710-like [Brachypodium distachyon]
Length = 718
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 102/472 (21%), Positives = 168/472 (35%), Gaps = 82/472 (17%)
Query: 141 ESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLV-DVMKKKGYGVAS 199
++S ARR +L ++ + TYN+++R + G +E G+V D M+ G
Sbjct: 132 DASLPSARRLLASML-RDGVAPNVYTYNILVRALCARGQREEALGVVGDDMRGAGCAPNV 190
Query: 200 HVRNKMTEKFEKEGLESDLEKLKGIFATGSIDNSI---EKVASRICKVVRSDIWGDDVER 256
N + F + G E+L G+ G + S+ V + +CK R +
Sbjct: 191 VTYNTLVAAFCRAGEVDAAERLVGVMREGGVRPSLVTFNTVVNGLCKAGRME-------- 242
Query: 257 QLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDC 316
D K +F A E + D SYN + S + C
Sbjct: 243 ----------------------DARK---MFDEMAREG--LTPDGVSYNTLVSGYCKAGC 275
Query: 317 IDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTF 376
+ V EM KG ++ T ++ ++ AV L
Sbjct: 276 LHEALAVFAEMAQKGVVPDVVTFTSLIHAMCRAGNLERAVAL------------------ 317
Query: 377 LLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEE 436
V RE G + + +++ G + + +K M E
Sbjct: 318 -------------------VGQMRERGLRMNEFTFTALIDGFCRNGFLDDALLAMKEMRE 358
Query: 437 GGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDK 496
S + + G+ DEA E + MEA G + +++ G+C GD D
Sbjct: 359 CRIQPSVVCYNVLINGYCKLGRMDEARELIHEMEAKGMKPDVVTYSTILSGYCKIGDTDS 418
Query: 497 AADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEEL 556
A + +KM+ K+G L+ C + R DAC+ + + L+P TY L
Sbjct: 419 AFELNRKML-KKGVVPDAITYSSLIRGLCEERRLGDACELFEK-MLQLGLQPDEFTYTTL 476
Query: 557 IKNLLVQRGFKDALSLLCLMKDHGFPPFVDPF---IKYVSKSGTSDDAIAFL 605
I + + ALSL M G P V + I +SKS + +A L
Sbjct: 477 IDGHCKEGNVQKALSLHDEMIKKGVLPDVVTYSVLIDGLSKSARTKEAQRLL 528
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 61/252 (24%), Positives = 95/252 (37%), Gaps = 6/252 (2%)
Query: 394 KVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRL 453
++V V RE G + N+V+ L GRM + K+ M G + +
Sbjct: 211 RLVGVMREGGVRPSLVTFNTVVNGLCKAGRMEDARKMFDEMAREGLTPDGVSYNTLVSGY 270
Query: 454 SSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHA 513
AG EA M G + SLI C AG+L++A +M E+ G
Sbjct: 271 CKAGCLHEALAVFAEMAQKGVVPDVVTFTSLIHAMCRAGNLERAVALVGQMRER-GLRMN 329
Query: 514 GYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLL 573
+ L++ +C +N +D +RE ++P Y LI +A L+
Sbjct: 330 EFTFTALIDGFC-RNGFLDDALLAMKEMRECRIQPSVVCYNVLINGYCKLGRMDEARELI 388
Query: 574 CLMKDHGFPPFVDPFIKYVS---KSGTSDDAIAFLKGMTSKR-FPSMSVVLCLFAAFFQA 629
M+ G P V + +S K G +D A + M K P L +
Sbjct: 389 HEMEAKGMKPDVVTYSTILSGYCKIGDTDSAFELNRKMLKKGVVPDAITYSSLIRGLCEE 448
Query: 630 RRHSEAQDLLSK 641
RR +A +L K
Sbjct: 449 RRLGDACELFEK 460
Score = 49.7 bits (117), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 52/211 (24%), Positives = 85/211 (40%), Gaps = 8/211 (3%)
Query: 404 NVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEAN 463
NV+T N+++ A G + +++ M EGG S + + L AG+ ++A
Sbjct: 189 NVVT---YNTLVAAFCRAGEVDAAERLVGVMREGGVRPSLVTFNTVVNGLCKAGRMEDAR 245
Query: 464 EFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNT 523
+ D M G + +L+ G+C AG L +A F +M +K G L++
Sbjct: 246 KMFDEMAREGLTPDGVSYNTLVSGYCKAGCLHEALAVFAEMAQK-GVVPDVVTFTSLIHA 304
Query: 524 YCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPP 583
C A V +RE L+ T+ LI DAL + M++ P
Sbjct: 305 MCRAGNLERAVALVGQ-MRERGLRMNEFTFTALIDGFCRNGFLDDALLAMKEMRECRIQP 363
Query: 584 FV---DPFIKYVSKSGTSDDAIAFLKGMTSK 611
V + I K G D+A + M +K
Sbjct: 364 SVVCYNVLINGYCKLGRMDEARELIHEMEAK 394
>gi|296087527|emb|CBI34116.3| unnamed protein product [Vitis vinifera]
Length = 727
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 75/317 (23%), Positives = 123/317 (38%), Gaps = 41/317 (12%)
Query: 252 DDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVL 311
D V + DLN + V + L +EP A FF +ESGF +H+ +Y A+ VL
Sbjct: 52 DSVGDRFIDLNTS----RVVEIFYNLKNEPNLAWSFFTQLKESGF-QHNVDTYAALIRVL 106
Query: 312 GREDCIDRFWKVLDEMRSK-----GYEME------------------------METCVKV 342
R + +L E+ G+++ ++ VK
Sbjct: 107 CRWRLERKLQSLLSEIVGSKESVLGFDITALFDVLREGGGEVEGEHSSVLILVLDMLVKA 166
Query: 343 LGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFREN 402
R M EA+D P + C FL+ +++ ++DM + + R +
Sbjct: 167 YVRVG---MFDEAIDALFQTKRRGFVPHIMSCNFLMNRLIEHGKIDMAV--AIYRHLKRL 221
Query: 403 GNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEA 462
G D +KAL G E + + MEE G ++ S L S + D
Sbjct: 222 GLNPNDYTYGIFIKALCRKGNFEEAVDVFREMEEAGVNPNAVTCSTYIEGLCSHKRSDLG 281
Query: 463 NEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVN 522
E + + A+ + + ++I+G C L +A D F MV EG + GY L++
Sbjct: 282 YEALRALRAANWPIDTFAYTAVIRGFCSEMKLKEAEDVFIDMV-NEGIAPDGYIYGALIH 340
Query: 523 TYCSKNRAIDACKFVHN 539
YC + A +HN
Sbjct: 341 AYCKAGNLLQAVA-LHN 356
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/206 (21%), Positives = 90/206 (43%), Gaps = 8/206 (3%)
Query: 388 DMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKS 447
D ++ ++ + + GN+L L++ ++S G K + G + +
Sbjct: 331 DGYIYGALIHAYCKAGNLLQAVALHN---DMVSNGIKTNLVDQFKEFRDSGIFLDEVLYN 387
Query: 448 KIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEK 507
+ L GK +EA E ++ M+ + + +LI G+C+ G L A + F++M E+
Sbjct: 388 IVVDALCKLGKVEEAVELLNEMKGRRMSLDVVHYTTLIAGYCLQGKLVDAKNMFEEMKER 447
Query: 508 EGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFK 567
G ++LV + +A + + +C+ LKP T+ +I+ L + K
Sbjct: 448 -GIEPDIVTYNILVGGFSRNGLKKEALELL-DCIGTQGLKPNSATHNRIIEGLCMAGKVK 505
Query: 568 DALSLLCLMKD---HGFPPFVDPFIK 590
+A + L ++D + VD + K
Sbjct: 506 EAEAFLNTLEDKCLENYSAMVDGYCK 531
Score = 48.1 bits (113), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 47/207 (22%), Positives = 79/207 (38%), Gaps = 11/207 (5%)
Query: 410 MLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHM 469
+L+ ++KA + VG E L + GF+ + + RL GK D A H+
Sbjct: 159 VLDMLVKAYVRVGMFDEAIDALFQTKRRGFVPHIMSCNFLMNRLIEHGKIDMAVAIYRHL 218
Query: 470 EASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNR 529
+ G + D + IK C G+ ++A D F++M E+ G + + CS R
Sbjct: 219 KRLGLNPNDYTYGIFIKALCRKGNFEEAVDVFREM-EEAGVNPNAVTCSTYIEGLCSHKR 277
Query: 530 AIDACKFVHNCVREYDLKPWHT---TYEELIKNLLVQRGFKDALSLLCLMKDHGFPP--- 583
+ + +R W Y +I+ + K+A + M + G P
Sbjct: 278 S----DLGYEALRALRAANWPIDTFAYTAVIRGFCSEMKLKEAEDVFIDMVNEGIAPDGY 333
Query: 584 FVDPFIKYVSKSGTSDDAIAFLKGMTS 610
I K+G A+A M S
Sbjct: 334 IYGALIHAYCKAGNLLQAVALHNDMVS 360
Score = 41.2 bits (95), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 56/292 (19%), Positives = 118/292 (40%), Gaps = 16/292 (5%)
Query: 300 DESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLY 359
DE YN + L + ++ ++L+EM+ + +++ ++ + + + +A +++
Sbjct: 382 DEVLYNIVVDALCKLGKVEEAVELLNEMKGRRMSLDVVHYTTLIAGYCLQGKLVDAKNMF 441
Query: 360 EFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALI 419
E +P + L+ S+ + +++ G A N +++ L
Sbjct: 442 EEMKERGIEPDIVTYNILVGGF--SRNGLKKEALELLDCIGTQGLKPNSATHNRIIEGLC 499
Query: 420 SVGRMGECNKILKAMEEGGFIASSNMK--------SKIAFRLSSAGKKDEANEFMDHMEA 471
G++ E L +E+ S M ++ A+ L S K + + M A
Sbjct: 500 MAGKVKEAEAFLNTLEDKCLENYSAMVDGYCKANFTRKAYELFSRLSK----QGILRMLA 555
Query: 472 SGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAI 531
+ M+ LI C GD+ +A F +VE+ G + +++N YC N +
Sbjct: 556 LDVEPNQIMYGKLIGAFCRDGDMKRAQLVFDMLVER-GITPDVITYTMMINGYCRVN-CL 613
Query: 532 DACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPP 583
+ + N ++E +KP TY ++ +DA++L M G P
Sbjct: 614 REARDIFNDMKERGIKPDVITYTVVLDGHSKTNNLQDAINLYDEMIARGLQP 665
>gi|255660936|gb|ACU25637.1| pentatricopeptide repeat-containing protein [Citharexylum
ligustrinum]
Length = 484
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 84/391 (21%), Positives = 161/391 (41%), Gaps = 49/391 (12%)
Query: 258 LRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCI 317
+R+L +F ++LV V+ + + AL FFRW E S +H+ ++ + +LGR +
Sbjct: 3 IRNLVPSFDHELVYNVLHG-SKKSEHALQFFRWVERSNLFEHNRETHLKIIEILGRASKL 61
Query: 318 DRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFL 377
+ +L +M KG E + + V ++ + + +V+E+V
Sbjct: 62 NHARCILLDMPKKGLEWDEDLWVLMIDSYGKAGIVQESV--------------------- 100
Query: 378 LRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEG 437
+LF K+ E G T + + K ++ GR + M
Sbjct: 101 ------------KLFQKM----EELGVERTIKSYDVLFKVILRRGRYMMAKRYFNKMLSE 144
Query: 438 GFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKA 497
G + + + + + +GK + AN F + M++ + ++I G+ +++A
Sbjct: 145 GIEPTRHTFNIMIWGFFLSGKVETANRFFEDMKSRXITPDVITYNTMINGYYRVKKMEEA 204
Query: 498 ADCFQKMVEKEGTSHAGYAIDL--LVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEE 555
F VE +G + + L+ Y S +R DA + ++ + +KP TY
Sbjct: 205 EKYF---VEMKGRNIEPTVVTXTTLIKGYVSVDRVDDALRLXEE-MKGFGIKPNAITYST 260
Query: 556 LIKNLLVQRGFKDALSLLCLMKDHGFPPFVDP-FIKYVS---KSGTSDDAIAFLKGMTSK 611
L+ L +A S L M D P + F++ +S K+G D A L+ M
Sbjct: 261 LLPGLCNAEKMSEARSXLKEMVDKYIAPTDNSIFLRLISGQCKAGNLDAAADVLQAMIRL 320
Query: 612 RFPSMSVVL-CLFAAFFQARRHSEAQDLLSK 641
P+ + L + +A ++ +A +LL K
Sbjct: 321 SVPTEAGHYGVLIENYCKAGQYDKAINLLDK 351
Score = 50.1 bits (118), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 107/498 (21%), Positives = 204/498 (40%), Gaps = 81/498 (16%)
Query: 128 FTHEMVLKVLKNLESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLV 187
F HE+V VL + S + A +FF WV + +T+ ++ I+G + ++
Sbjct: 10 FDHELVYNVLHGSKKS-EHALQFFRWVERSNLFEHNRETHLKIIEILGRASKLNHARCIL 68
Query: 188 DVMKKKGYGVASHVRNKMTEKFEKEGLESDLEKLKGIFATGSIDNSIEKVASRICKVVRS 247
M KKG + M + + K G+ + KL +E++
Sbjct: 69 LDMPKKGLEWDEDLWVLMIDSYGKAGIVQESVKLF---------QKMEELG--------- 110
Query: 248 DIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAM 307
VER ++ +V F V+ + G F + E ++ ++N M
Sbjct: 111 ------VERTIKSYDVLFK------VILRRGRYMMAKRYFNKMLSEG--IEPTRHTFNIM 156
Query: 308 A---SVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMA 364
+ G+ + +RF+ ++M+S+ ++ T ++ + ++EA + Y M
Sbjct: 157 IWGFFLSGKVETANRFF---EDMKSRXITPDVITYNTMINGYYRVKKMEEA-EKYFVEMK 212
Query: 365 CKN-KPSVNCCTFLLRKIVVSKQLD--MRLFSKVVRVFRENGNVLTDAMLNSVLKALISV 421
+N +P+V T L++ V ++D +RL ++ + F N +T +++L L +
Sbjct: 213 GRNIEPTVVTXTTLIKGYVSVDRVDDALRLXEEM-KGFGIKPNAIT---YSTLLPGLCNA 268
Query: 422 GRMGECNKILKAMEEGGFIASSNMKSKIAFRLSS----AGKKDEANEFMDHMEASGSDVG 477
+M E LK M + +IA ++ + I RL S AG D A + + M
Sbjct: 269 EKMSEARSXLKEMVDK-YIAPTD--NSIFLRLISGQCKAGNLDAAADVLQAMIRLSVPTE 325
Query: 478 DKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFV 537
+ LI+ +C AG DKA + K++EK D+++ + +
Sbjct: 326 AGHYGVLIENYCKAGQYDKAINLLDKLIEK----------DIILRPQST----LHMEXIA 371
Query: 538 HNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPFIKYVSKSGT 597
+N + EY T E + L++ G +D+++L L+ H S+ G+
Sbjct: 372 YNPLIEYLCNNGRTAKAETLVRQLMKLGVQDSIALNTLILGH-------------SQEGS 418
Query: 598 SDDAIAFLKGMTSKRFPS 615
D A LK M ++ S
Sbjct: 419 PDSAFELLKIMLRRKIDS 436
>gi|242067353|ref|XP_002448953.1| hypothetical protein SORBIDRAFT_05g002330 [Sorghum bicolor]
gi|241934796|gb|EES07941.1| hypothetical protein SORBIDRAFT_05g002330 [Sorghum bicolor]
Length = 734
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 55/238 (23%), Positives = 100/238 (42%), Gaps = 6/238 (2%)
Query: 410 MLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHM 469
+ NS++ L +V + +++ M + G ++ + + L + G+ E +D M
Sbjct: 381 VFNSLVYGLCTVDKWERAEELVYEMLDQGICPNAVFFNTLICNLCNVGRVMEGRRLIDLM 440
Query: 470 EASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNR 529
E G + LI G+C+AG D+A F MV G S + L++ YCS +R
Sbjct: 441 EHVGVRPDAFSYTPLISGYCLAGRTDEAEKVFDGMVSI-GLSPTEVTYNTLLHGYCSASR 499
Query: 530 AIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFV---D 586
DA +R+ + P TY ++ L + F +A L M + G + +
Sbjct: 500 IDDAYCLFREMLRK-GVTPGVVTYNTILHGLFQTKRFSEAKELYLNMINSGTKCDIYTYN 558
Query: 587 PFIKYVSKSGTSDDAIAFLKGMTSKRFP-SMSVVLCLFAAFFQARRHSEAQDLLSKCP 643
+ + KS D+A + + SK ++ + A + R +A DL + P
Sbjct: 559 IILNGLCKSNCVDEAFKMFQSLCSKGLQLNIITFTIMIGALLKGGRKEDAMDLFAAIP 616
Score = 46.2 bits (108), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 34/150 (22%), Positives = 69/150 (46%), Gaps = 2/150 (1%)
Query: 298 KHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVD 357
K D +YN + + L + +C+D +K+ + SKG ++ + T ++G + ++A+D
Sbjct: 551 KCDIYTYNIILNGLCKSNCVDEAFKMFQSLCSKGLQLNIITFTIMIGALLKGGRKEDAMD 610
Query: 358 LYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKA 417
L FA N N T+ L + ++ + F + +NG MLN++++
Sbjct: 611 L--FAAIPANGLVPNVVTYRLVAENLIEEGSLEEFDSLFSAMEKNGTAPNSQMLNALVRR 668
Query: 418 LISVGRMGECNKILKAMEEGGFIASSNMKS 447
L+ G + L ++E F ++ S
Sbjct: 669 LLHRGDISRAGAYLSKLDERNFSVEASTTS 698
Score = 40.8 bits (94), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 69/359 (19%), Positives = 130/359 (36%), Gaps = 22/359 (6%)
Query: 303 SYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFA 362
+Y + L + DR V +M G + +T ++ + KE V + E
Sbjct: 209 TYTTVIDGLCKAQLFDRAEGVFQQMIDNGVKPNNDTYNCLIHGYLSIGKWKEVVQMLEKM 268
Query: 363 MACKNKPSVNCCTF--LLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALIS 420
A KP +C T+ LL + ++ + + ENG + N A
Sbjct: 269 SARGLKP--DCYTYGSLLNYLCALSEM-----HSFLDLMVENGLSPDHHIFNIFFSAYAK 321
Query: 421 VGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKM 480
G + + I M + G + + L G+ D+A + M G +
Sbjct: 322 CGMIDKAMDIFNKMRQHGLSPNVVNYGALIDALCKLGRVDDAEVKFNQMINEGVTPNIVV 381
Query: 481 WVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNC 540
+ SL+ G C ++A + +M++ +G + L+ C+ R ++ + + +
Sbjct: 382 FNSLVYGLCTVDKWERAEELVYEMLD-QGICPNAVFFNTLICNLCNVGRVMEGRRLI-DL 439
Query: 541 VREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPP---FVDPFIKYVSKSGT 597
+ ++P +Y LI + +A + M G P + + +
Sbjct: 440 MEHVGVRPDAFSYTPLISGYCLAGRTDEAEKVFDGMVSIGLSPTEVTYNTLLHGYCSASR 499
Query: 598 SDDAIAFLKGMTSKRF-PSMSVVLCLFAAFFQARRHSEAQDLL-------SKCPRYVRN 648
DDA + M K P + + FQ +R SEA++L +KC Y N
Sbjct: 500 IDDAYCLFREMLRKGVTPGVVTYNTILHGLFQTKRFSEAKELYLNMINSGTKCDIYTYN 558
>gi|255660852|gb|ACU25595.1| pentatricopeptide repeat-containing protein [Stachytarpheta
cayennensis]
Length = 418
Score = 63.5 bits (153), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 77/315 (24%), Positives = 121/315 (38%), Gaps = 14/315 (4%)
Query: 337 ETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVV 396
+TC KVL E K D Y+ + C S+ L+++ K+ +MRL V
Sbjct: 102 DTCRKVLEHLMEFRYFKLVWDFYKEVLECGYPASLYFFNILMQRFC--KEGEMRLAQSVF 159
Query: 397 RVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSA 456
+ G + N+++ I +G + E ++ AM G S + L
Sbjct: 160 DAITKWGLRPSVVSFNTLINGYIKLGDLDEGFRLKSAMHASGAQPDVYTYSILINGLCKE 219
Query: 457 GKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYA 516
GK DEANE + M +G + +LI GHC +D A + +++M+ +G S
Sbjct: 220 GKLDEANELFNEMLDNGLVPNGVTFTTLIHGHCKNEKVDLAMEIYKQMLS-QGLSPDLIT 278
Query: 517 IDLLVNTYCSKNRAIDACKFVHNCVREY---DLKPWHTTYEELIKNLLVQRGFKDALSLL 573
+ L+ C K K VH+ + E LKP +Y LI + + AL L
Sbjct: 279 YNTLIYGLCKKGEL----KQVHDLIDEMIMNGLKPDKISYTTLIDGSCKEGDLEIALELR 334
Query: 574 CLMKDHGF---PPFVDPFIKYVSKSGTSDDAIAFLKGMTSKRF-PSMSVVLCLFAAFFQA 629
M I + + G + DA L+ M S P + F +
Sbjct: 335 NKMIQESIRLDDVAYTALISCLCREGRASDAEKMLREMLSVGLKPDNGTYTMIINEFCKK 394
Query: 630 RRHSEAQDLLSKCPR 644
R A LL + R
Sbjct: 395 RDSKTASKLLREMQR 409
Score = 50.8 bits (120), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 54/224 (24%), Positives = 94/224 (41%), Gaps = 8/224 (3%)
Query: 364 ACKNKPSVNCCTFLLRKIVVSKQLDM--RLFSKVVRVFRENGNVLTDAMLNSVLKALISV 421
A +P V + L+ + +LD LF++++ +NG V +++
Sbjct: 199 ASGAQPDVYTYSILINGLCKEGKLDEANELFNEML----DNGLVPNGVTFTTLIHGHCKN 254
Query: 422 GRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMW 481
++ +I K M G + + + L G+ + ++ +D M +G +
Sbjct: 255 EKVDLAMEIYKQMLSQGLSPDLITYNTLIYGLCKKGELKQVHDLIDEMIMNGLKPDKISY 314
Query: 482 VSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCV 541
+LI G C GDL+ A + KM++ E A L++ C + RA DA K + +
Sbjct: 315 TTLIDGSCKEGDLEIALELRNKMIQ-ESIRLDDVAYTALISCLCREGRASDAEKMLREML 373
Query: 542 REYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFV 585
LKP + TY +I +R K A LL M+ G P V
Sbjct: 374 -SVGLKPDNGTYTMIINEFCKKRDSKTASKLLREMQRDGPLPGV 416
>gi|242065464|ref|XP_002454021.1| hypothetical protein SORBIDRAFT_04g023230 [Sorghum bicolor]
gi|241933852|gb|EES06997.1| hypothetical protein SORBIDRAFT_04g023230 [Sorghum bicolor]
Length = 729
Score = 63.5 bits (153), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 62/269 (23%), Positives = 114/269 (42%), Gaps = 10/269 (3%)
Query: 323 VLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIV 382
+LDEMR+KG E ++ T ++ V EA+++ + KP T +L+ +
Sbjct: 219 LLDEMRAKGCEPDIVTYNVLINAMCNEGDVDEALNILSDLPSHGCKPDAVTYTPVLKSLC 278
Query: 383 VSKQLDMRLFSKVVRVFRE---NGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGF 439
S++ + +V +F E N + N+++ +L G + K++ M E G
Sbjct: 279 GSER-----WKEVEELFAEMASNKCAPDEVTFNTIVTSLCQQGLVDRAIKVVDHMSEHGC 333
Query: 440 IASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAAD 499
I S I L G+ D+A E + +++ G + +++KG C + A +
Sbjct: 334 IPDIVTYSSILDGLCDVGRVDDAVELLSRLKSYGCKPDTIAYTTVLKGLCSIEQWEHAEE 393
Query: 500 CFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKN 559
+MV + + ++ + C K A K V + E P TY +I
Sbjct: 394 LMAEMVCSDCPPDE-VTFNTVIASLCQKGLVDRAIKVVEQ-MSENGCNPDIVTYNSIIDG 451
Query: 560 LLVQRGFKDALSLLCLMKDHGFPPFVDPF 588
L +R DA+ LL ++ +G P + F
Sbjct: 452 LCNERCIDDAMELLSNLQSYGCKPDIVTF 480
Score = 59.3 bits (142), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 75/337 (22%), Positives = 141/337 (41%), Gaps = 25/337 (7%)
Query: 289 RWAE--------ESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCV 340
RW E S DE ++N + + L ++ +DR KV+D M G ++ T
Sbjct: 282 RWKEVEELFAEMASNKCAPDEVTFNTIVTSLCQQGLVDRAIKVVDHMSEHGCIPDIVTYS 341
Query: 341 KVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDM--RLFSKVVRV 398
+L + V +AV+L + KP T +L+ + +Q + L +++V
Sbjct: 342 SILDGLCDVGRVDDAVELLSRLKSYGCKPDTIAYTTVLKGLCSIEQWEHAEELMAEMVCS 401
Query: 399 FRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGK 458
V N+V+ +L G + K+++ M E G + I L +
Sbjct: 402 DCPPDEV----TFNTVIASLCQKGLVDRAIKVVEQMSENGCNPDIVTYNSIIDGLCNERC 457
Query: 459 KDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAID 518
D+A E + ++++ G + +L+KG C + A M+ + A +
Sbjct: 458 IDDAMELLSNLQSYGCKPDIVTFNTLLKGLCSVDRWEDAEQLMVNMMHSDCPPDA-TTFN 516
Query: 519 LLVNTYCSKN---RAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCL 575
++ + C K +AI+ K + E P +TY ++ LL ++AL LL
Sbjct: 517 TVITSLCQKGLLLQAIETLKIMA----ENGCIPNQSTYNIVVDALLKAGKTQEALKLLSG 572
Query: 576 MKDHGFPPFV--DPFIKYVSKSGTSDDAIAFLKGMTS 610
M +G P + + I ++K+G ++A+ L+ M S
Sbjct: 573 MT-NGTPDLITYNTVISNITKAGKMEEALDLLRVMVS 608
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 72/345 (20%), Positives = 135/345 (39%), Gaps = 47/345 (13%)
Query: 300 DESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLY 359
DE ++N + + L ++ +DR KV+++M G ++ T ++ + +A++L
Sbjct: 406 DEVTFNTVIASLCQKGLVDRAIKVVEQMSENGCNPDIVTYNSIIDGLCNERCIDDAMELL 465
Query: 360 EFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAM-LNSVLKAL 418
+ KP + LL+ + +D ++ + V + + DA N+V+ +L
Sbjct: 466 SNLQSYGCKPDIVTFNTLLKGLC---SVDRWEDAEQLMVNMMHSDCPPDATTFNTVITSL 522
Query: 419 ISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGD 478
G + + + LK M E G I + + + + L AGK EA + + M D+
Sbjct: 523 CQKGLLLQAIETLKIMAENGCIPNQSTYNIVVDALLKAGKTQEALKLLSGMTNGTPDL-- 580
Query: 479 KMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVH 538
+ ++I AG +++A D + MV
Sbjct: 581 ITYNTVISNITKAGKMEEALDLLRVMVSN------------------------------- 609
Query: 539 NCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPP---FVDPFIKYVSKS 595
L P TY L + + G A+ +LC ++D G P F + + ++
Sbjct: 610 ------GLSPDTITYRSLAYGICREDGTDRAIRMLCRLQDMGLSPDATFYNDILLGFCQN 663
Query: 596 GTSDDAI-AFLKGMTSKRFPSMSVVLCLFAAFFQARRHSEAQDLL 639
+D AI F ++S P S + L A EA+ LL
Sbjct: 664 WRTDIAIDCFAHMVSSGCMPDESTYIILLEALAYECLLDEAKQLL 708
Score = 41.6 bits (96), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 66/321 (20%), Positives = 119/321 (37%), Gaps = 58/321 (18%)
Query: 221 LKGIFATGSIDNSIEKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDE 280
LKG+ + +++ E +A +C SD D+V N ++ K +VD+
Sbjct: 379 LKGLCSIEQWEHAEELMAEMVC----SDCPPDEVT-----FNTVIASLCQKGLVDR---- 425
Query: 281 PKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCV 340
A+ E+G D +YN++ L E CID ++L ++S G + ++ T
Sbjct: 426 ---AIKVVEQMSENG-CNPDIVTYNSIIDGLCNERCIDDAMELLSNLQSYGCKPDIVTFN 481
Query: 341 KVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVV---R 397
+L + ++A L M P TF V++ L + + +
Sbjct: 482 TLLKGLCSVDRWEDAEQLMVNMMHSDCPPDAT--TF---NTVITSLCQKGLLLQAIETLK 536
Query: 398 VFRENG--------NVLTDAML-------------------------NSVLKALISVGRM 424
+ ENG N++ DA+L N+V+ + G+M
Sbjct: 537 IMAENGCIPNQSTYNIVVDALLKAGKTQEALKLLSGMTNGTPDLITYNTVISNITKAGKM 596
Query: 425 GECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSL 484
E +L+ M G + +A+ + D A + ++ G + +
Sbjct: 597 EEALDLLRVMVSNGLSPDTITYRSLAYGICREDGTDRAIRMLCRLQDMGLSPDATFYNDI 656
Query: 485 IKGHCVAGDLDKAADCFQKMV 505
+ G C D A DCF MV
Sbjct: 657 LLGFCQNWRTDIAIDCFAHMV 677
>gi|297851460|ref|XP_002893611.1| hypothetical protein ARALYDRAFT_336125 [Arabidopsis lyrata subsp.
lyrata]
gi|297339453|gb|EFH69870.1| hypothetical protein ARALYDRAFT_336125 [Arabidopsis lyrata subsp.
lyrata]
Length = 814
Score = 63.5 bits (153), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 72/335 (21%), Positives = 132/335 (39%), Gaps = 5/335 (1%)
Query: 250 WGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMAS 309
W E Q+R+L + V V+ DE + AL FF WA+ +HD Y +M
Sbjct: 160 WNPKHEGQMRNLLRSLKPSQVCAVLRSQDDE-RVALKFFYWADRQWRYRHDPMVYYSMLE 218
Query: 310 VLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKP 369
VL + +VL M+ +G E ++V+ +S +++A+ + +P
Sbjct: 219 VLSKTKMCQGARRVLVLMKRRGIYRTPEAFLRVMVSYSRAGQLRDALKVLTLMQRAGVEP 278
Query: 370 SVNCCTFLLRKIVVSKQLDMRL-FSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECN 428
++ C + V + +L+ L F + ++V NV+T N +++ + R+ E
Sbjct: 279 NLLICNTTIDVFVRANRLEKALRFLERMQVVGIVPNVVT---YNCMIRGYCDLHRVEEAI 335
Query: 429 KILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGH 488
++L M G + I L + E + M M V D++ + +
Sbjct: 336 ELLDDMPSKGCLPDKVSYYTIMGYLCKEKRIVEVRDLMKKMAKEHGLVRDQVTYNTLIHM 395
Query: 489 CVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKP 548
D A F K E++G +V+ C + R +A ++ + + P
Sbjct: 396 LTKHDHADEALWFLKDAEEKGFRIDKVGYSAIVHALCKEGRMSEAKDLINEMLSKGHCPP 455
Query: 549 WHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPP 583
TY ++ A LL +M HG+ P
Sbjct: 456 DVVTYTAVVNGFCRLGEVDKAKKLLQIMHTHGYKP 490
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 69/298 (23%), Positives = 122/298 (40%), Gaps = 10/298 (3%)
Query: 279 DEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGY-EMEME 337
D +AL F + AEE GF + D+ Y+A+ L +E + +++EM SKG+ ++
Sbjct: 400 DHADEALWFLKDAEEKGF-RIDKVGYSAIVHALCKEGRMSEAKDLINEMLSKGHCPPDVV 458
Query: 338 TCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIV-VSKQLDMRLFSKVV 396
T V+ F V +A L + KP+ T LL + K L+ R +
Sbjct: 459 TYTAVVNGFCRLGEVDKAKKLLQIMHTHGYKPNTVSYTALLNGLCRTGKSLEAREMMNMS 518
Query: 397 RVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSA 456
+ N +T ++L + L G++ E +++ M GF + + L
Sbjct: 519 EEQWWSPNSITYSVL---MHGLRKEGKLSEACDVVREMVLKGFFPGPVEINLLLQSLCRD 575
Query: 457 GKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAG-Y 515
G+ EA +FM+ G + + ++I G C +LD A M HA +
Sbjct: 576 GRTHEARKFMEECLNKGCAINVVNFTTVIHGFCQNDELDAALSVLDDMYLI--NKHADVF 633
Query: 516 AIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLL 573
LV+ K R +A + + + + + P TY +I D +++L
Sbjct: 634 TYTTLVDALGKKGRIAEATELMKKMLHK-GIDPTPVTYRTVIHRYCQMEKVDDLVAIL 690
>gi|224125420|ref|XP_002329801.1| predicted protein [Populus trichocarpa]
gi|222870863|gb|EEF07994.1| predicted protein [Populus trichocarpa]
Length = 478
Score = 63.5 bits (153), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 72/305 (23%), Positives = 127/305 (41%), Gaps = 7/305 (2%)
Query: 282 KKALIFF--RWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETC 339
+KA I F AE S +HD +++ M S L + ++L+ M+ + + E
Sbjct: 29 RKAKIIFDSASAEYSNGFRHDHTTFGVMISKLVSANEFRPAEEMLNRMKEEKCRITEEIF 88
Query: 340 VKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVF 399
+ + + +M +A+ ++ KP+ + +V QL + + +
Sbjct: 89 LSICRGYGRVHMPLDAIRVFHKMNDFGCKPTDKSYISVFAILVEENQLKVAM--SFYKYM 146
Query: 400 RENGNVLTDAMLNSVLKALI-SVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGK 458
RE G + LN ++KAL + G + +I + M + G S + L GK
Sbjct: 147 REMGVRQSVVSLNVLIKALCKNSGTIDAAFEIFREMPKRGCDPDSYTYGTLINGLCKLGK 206
Query: 459 KDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAID 518
EA E M+ G + L+ G C AG++D+A F KM +K+ +
Sbjct: 207 TFEAKELFKEMDTKGCSPSVVTYSCLMHGLCQAGNVDEAMGLFDKM-KKKAIEPNVFTYS 265
Query: 519 LLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKD 578
L++ C +++A + + VR+ KP TY LI L + +A+ L MK
Sbjct: 266 SLMDGLCKNGGSLEAMELLEMMVRKRH-KPNMVTYSTLINGLCKEGKLAEAVETLDRMKL 324
Query: 579 HGFPP 583
G P
Sbjct: 325 QGLKP 329
>gi|326533642|dbj|BAK05352.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 860
Score = 63.2 bits (152), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 78/365 (21%), Positives = 142/365 (38%), Gaps = 22/365 (6%)
Query: 283 KALIFFRWAEESGFVKHDESSYNAMA---SVLGREDCIDRFWKVLDEMRSKGYEMEMETC 339
KA + R G + D +Y+ M + LGR + K+ EM+ +G + TC
Sbjct: 318 KAELVLRQMTTDG-AQPDTVTYSCMIHGYATLGR---LKEAAKMFREMKKRGLIPNIVTC 373
Query: 340 VKVLGRFSERNMVKEAVDLYEFAMACKNKPSV-NCCTFLLRKIVVSKQLDMRLFSKVVRV 398
L + KEA + ++ A +KP + + CT L F+ ++ +
Sbjct: 374 NSFLASLCKHGRSKEAAEFFDSMTAKGHKPDIFSYCTLL------HGYASEGCFADMIGL 427
Query: 399 F---RENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSS 455
F + NG + ++ A G + + I M++ G S + S
Sbjct: 428 FNSMKSNGIAANCHVFTILIHAYAKRGMVDDAMLIFTEMQQQGVSPDVVTYSTVISTFSR 487
Query: 456 AGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGY 515
G+ +A E + M A G ++ S+I+G C+ G L KA + +M+ K
Sbjct: 488 MGRLTDAMEKFNQMVARGIQPNTAVYSSIIQGFCMHGGLVKAKELVSEMINKGIPRPDIV 547
Query: 516 AIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCL 575
++N+ C R +DA + + + +P T+ LI + A +L
Sbjct: 548 FFSSVINSLCKDGRVMDA-HDIFDLATDIGERPGVITFNSLIDGYCLVGKMDKAFKILDA 606
Query: 576 MKDHGFPPFV---DPFIKYVSKSGTSDDAIAFLKGMTSKRF-PSMSVVLCLFAAFFQARR 631
M+ G P + + + K+G +D + + M K P+ + A F+A R
Sbjct: 607 MEVVGVEPDIVTYNTLLDGYFKNGRINDGLTLFREMQRKGVKPNTVTYGIMLAGLFRAGR 666
Query: 632 HSEAQ 636
A+
Sbjct: 667 TVAAR 671
Score = 52.4 bits (124), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 100/492 (20%), Positives = 183/492 (37%), Gaps = 55/492 (11%)
Query: 146 EARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRNKM 205
EA FF+ + K + +Y +L G + GL + MK G HV +
Sbjct: 388 EAAEFFDSMTAK-GHKPDIFSYCTLLHGYASEGCFADMIGLFNSMKSNGIAANCHVFTIL 446
Query: 206 TEKFEKEGLESDLEKLKGIFATGSIDNSIEKVASRICKVVRSDIWGDDVERQLRDLNVTF 265
+ K G+ D + + + ++ I R D +E+ F
Sbjct: 447 IHAYAKRGMVDDAMLIFTEMQQQGVSPDVVTYSTVISTFSRMGRLTDAMEK--------F 498
Query: 266 SNDLVKFVVDKLGDEPKKAL---IFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWK 322
+ + + G +P A+ I + G VK E + + R D I F
Sbjct: 499 NQMVAR------GIQPNTAVYSSIIQGFCMHGGLVKAKELVSEMINKGIPRPD-IVFFSS 551
Query: 323 VLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIV 382
V++ + G M+ A D+++ A +P V L+
Sbjct: 552 VINSLCKDGRVMD-------------------AHDIFDLATDIGERPGVITFNSLIDGYC 592
Query: 383 VSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIAS 442
+ ++D K++ G N++L GR+ + + + M+ G +
Sbjct: 593 LVGKMDKAF--KILDAMEVVGVEPDIVTYNTLLDGYFKNGRINDGLTLFREMQRKGVKPN 650
Query: 443 SNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQ 502
+ + L AG+ A + M SG+ V ++ ++ G C D+A FQ
Sbjct: 651 TVTYGIMLAGLFRAGRTVAARKKFHEMIESGTTVTVSIYGIILGGLCRNNCADEAIILFQ 710
Query: 503 KMVEKEGTSHAGYAIDLL---VNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKN 559
K+ GT + ++I +L +N R +A K + + L P +TY +I N
Sbjct: 711 KL----GTMNVKFSITILNTMINAMYKVQRKEEA-KELFATISASGLLPNESTYGVMIIN 765
Query: 560 LLVQRGFKDALSLLCLMKDHGFPP---FVDPFIKYVSKSGTSDDAIAFLKGMTSKRF--- 613
LL G +DA ++ M+ G P ++ I+ + + G A +L + KR
Sbjct: 766 LLKDGGVEDANNMFSSMEKSGIVPGSRLLNRIIRMLLEKGEIAKAGNYLSKVDGKRILLE 825
Query: 614 -PSMSVVLCLFA 624
+ S++L LF+
Sbjct: 826 ASTTSLMLSLFS 837
Score = 50.1 bits (118), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 59/253 (23%), Positives = 99/253 (39%), Gaps = 17/253 (6%)
Query: 365 CKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRM 424
C ++CC R L + LF ++R G + N++LK L R
Sbjct: 158 CTYNILMDCCCRARRP-----DLGLALFGCILR----TGLKMDQITANTLLKCLCYANRT 208
Query: 425 GEC-NKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKM--W 481
E N +L M E G + ++ S + L A + + M G + +
Sbjct: 209 EEAVNVLLHRMSELGCVPNAVSYSIVLKALCDNSMSQRALDLLQMMAKQGGACSPDVVAY 268
Query: 482 VSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCV 541
++I G G+ KA F +M ++G +L+++ C K RA+D + V +
Sbjct: 269 STVIHGFFNEGETGKACSLFHEMT-RQGVKPDVVTYNLIIDALC-KARAMDKAELVLRQM 326
Query: 542 REYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFV---DPFIKYVSKSGTS 598
+P TY +I K+A + MK G P + + F+ + K G S
Sbjct: 327 TTDGAQPDTVTYSCMIHGYATLGRLKEAAKMFREMKKRGLIPNIVTCNSFLASLCKHGRS 386
Query: 599 DDAIAFLKGMTSK 611
+A F MT+K
Sbjct: 387 KEAAEFFDSMTAK 399
Score = 41.6 bits (96), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 75/369 (20%), Positives = 144/369 (39%), Gaps = 20/369 (5%)
Query: 282 KKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVK 341
K+A FF G K D SY + E C + + M+S G
Sbjct: 387 KEAAEFFDSMTAKGH-KPDIFSYCTLLHGYASEGCFADMIGLFNSMKSNGIAANCHVFTI 445
Query: 342 VLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRE 401
++ +++R MV +A+ ++ P V + V+S M + + F +
Sbjct: 446 LIHAYAKRGMVDDAMLIFTEMQQQGVSPDV-----VTYSTVISTFSRMGRLTDAMEKFNQ 500
Query: 402 ---NGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMK--SKIAFRLSSA 456
G A+ +S+++ G + + +++ M G I ++ S + L
Sbjct: 501 MVARGIQPNTAVYSSIIQGFCMHGGLVKAKELVSEMINKG-IPRPDIVFFSSVINSLCKD 559
Query: 457 GKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYA 516
G+ +A++ D G G + SLI G+C+ G +DKA M E G
Sbjct: 560 GRVMDAHDIFDLATDIGERPGVITFNSLIDGYCLVGKMDKAFKILDAM-EVVGVEPDIVT 618
Query: 517 IDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLM 576
+ L++ Y R D R+ +KP TY ++ L A M
Sbjct: 619 YNTLLDGYFKNGRINDGLTLFREMQRK-GVKPNTVTYGIMLAGLFRAGRTVAARKKFHEM 677
Query: 577 KDHGFPPFVDPF---IKYVSKSGTSDDAIAFLK--GMTSKRFPSMSVVLCLFAAFFQARR 631
+ G V + + + ++ +D+AI + G + +F S++++ + A ++ +R
Sbjct: 678 IESGTTVTVSIYGIILGGLCRNNCADEAIILFQKLGTMNVKF-SITILNTMINAMYKVQR 736
Query: 632 HSEAQDLLS 640
EA++L +
Sbjct: 737 KEEAKELFA 745
>gi|255660854|gb|ACU25596.1| pentatricopeptide repeat-containing protein [Stachytarpheta
cayennensis]
Length = 418
Score = 63.2 bits (152), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 77/315 (24%), Positives = 121/315 (38%), Gaps = 14/315 (4%)
Query: 337 ETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVV 396
+TC KVL E K D Y+ + C S+ L+++ K+ +MRL V
Sbjct: 102 DTCRKVLEHLMEFRYFKLVWDFYKEVLECGYPASLYFFNILMQRFC--KEGEMRLAQSVF 159
Query: 397 RVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSA 456
+ G + N+++ I +G + E ++ AM G S + L
Sbjct: 160 DAITKWGLRPSVVSFNTLINGYIKLGDLDEGFRLKSAMHASGAQPDVYTYSILINGLCKE 219
Query: 457 GKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYA 516
GK DEANE + M +G + +LI GHC +D A + +++M+ +G S
Sbjct: 220 GKLDEANELFNEMLDNGLVPNGVTFTTLIHGHCKNEKVDLAMEIYKQMLS-QGLSPDLIT 278
Query: 517 IDLLVNTYCSKNRAIDACKFVHNCVREY---DLKPWHTTYEELIKNLLVQRGFKDALSLL 573
+ L+ C K K VH+ + E LKP +Y LI + + AL L
Sbjct: 279 YNTLIYGLCKKGEL----KQVHDLIDEMIMNGLKPDKISYTTLIDGSCKEGDLEIALELR 334
Query: 574 CLMKDHGF---PPFVDPFIKYVSKSGTSDDAIAFLKGMTSKRF-PSMSVVLCLFAAFFQA 629
M I + + G + DA L+ M S P + F +
Sbjct: 335 NKMIQESIRLDDVAYTALISCLCREGRAGDAEKMLREMLSVGLKPDNGTYTMIINEFCKK 394
Query: 630 RRHSEAQDLLSKCPR 644
R A LL + R
Sbjct: 395 RDSKTASKLLREMQR 409
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 54/224 (24%), Positives = 94/224 (41%), Gaps = 8/224 (3%)
Query: 364 ACKNKPSVNCCTFLLRKIVVSKQLDM--RLFSKVVRVFRENGNVLTDAMLNSVLKALISV 421
A +P V + L+ + +LD LF++++ +NG V +++
Sbjct: 199 ASGAQPDVYTYSILINGLCKEGKLDEANELFNEML----DNGLVPNGVTFTTLIHGHCKN 254
Query: 422 GRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMW 481
++ +I K M G + + + L G+ + ++ +D M +G +
Sbjct: 255 EKVDLAMEIYKQMLSQGLSPDLITYNTLIYGLCKKGELKQVHDLIDEMIMNGLKPDKISY 314
Query: 482 VSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCV 541
+LI G C GDL+ A + KM++ E A L++ C + RA DA K + +
Sbjct: 315 TTLIDGSCKEGDLEIALELRNKMIQ-ESIRLDDVAYTALISCLCREGRAGDAEKMLREML 373
Query: 542 REYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFV 585
LKP + TY +I +R K A LL M+ G P V
Sbjct: 374 -SVGLKPDNGTYTMIINEFCKKRDSKTASKLLREMQRDGPVPGV 416
>gi|168028441|ref|XP_001766736.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162681945|gb|EDQ68367.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 560
Score = 63.2 bits (152), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 80/351 (22%), Positives = 142/351 (40%), Gaps = 11/351 (3%)
Query: 236 KVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESG 295
+V +C ++R W D L +N T S + V+ K E AL FF WA+E
Sbjct: 3 EVVDHVCNILRQLNWRPDTLVALSRVNRTLSAFHINEVL-KHQKESGLALKFFDWAKEQE 61
Query: 296 FVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEA 355
KHD +Y M ++GR + ++L EMR +G E + T +++ + N + EA
Sbjct: 62 GYKHDVCTYTTMIGIMGRARNFEACSRLLQEMRREGCEPCVVTYNRLIHAYGRANFLGEA 121
Query: 356 VDL-YEFAMACKNKPSVNCCTFL-LRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNS 413
+ + Y+ + V CT + L M ++ K+ + D S
Sbjct: 122 MRIFYQMQEEGCSPDRVTYCTLVDLHSKAGFHDNAMDMYQKM-----QQAGFQPDTFTYS 176
Query: 414 V-LKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEAS 472
V + L G++ E K+ + M E GF S + I + +G A + + M+ +
Sbjct: 177 VIIHCLGKAGKVSEALKLFEEMVERGFAPSLVTYNIIIDLQAKSGNYVMAMKLYNDMQDA 236
Query: 473 GSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAID 532
G + +++ G L +A F +M E+ G ++V+ + A
Sbjct: 237 GFHPDRVTYSIMMEVLGQIGHLQEAELMFNEM-EQAGWVPDAPIYGVMVDMWGKARNAER 295
Query: 533 ACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPP 583
A ++ + + L P L+ + L + F A ++ MK G P
Sbjct: 296 ALEWYQKML-DSGLTPNVQISNSLLGSYLRMQQFDLAFGVIETMKAWGLVP 345
>gi|413955492|gb|AFW88141.1| hypothetical protein ZEAMMB73_138069 [Zea mays]
Length = 1091
Score = 63.2 bits (152), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 85/368 (23%), Positives = 141/368 (38%), Gaps = 44/368 (11%)
Query: 273 VVDKLGDEPKKALIFFRW-AEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKG 331
++DK GD + W A + + SY A+ L + +D V DEM+ KG
Sbjct: 317 LLDKCGDSGDSQSVVEVWNAMVADGYNDNIVSYTAVVDALCQVGRVDEALAVFDEMKEKG 376
Query: 332 YEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRL 391
E + ++ F + +M A++L+ AC PS N T +L K
Sbjct: 377 MSPEQYSYNSLISGFLKADMFDRALELFNHMNAC--GPSPNGYTHVLFINYYGKSGQSLK 434
Query: 392 FSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAF 451
+ + G V A N+VL +L GR+G ++ ++ G + + +
Sbjct: 435 AIQRYEHMKSKGIVPDVAAANAVLYSLAGSGRLGMAKRVFYELKAMGVSPDTITYTMMIK 494
Query: 452 RLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTS 511
S A K DEA F M SG CV L
Sbjct: 495 CCSKASKADEAMNFFSDMVESG---------------CVPDVL----------------- 522
Query: 512 HAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALS 571
A++ L++T + +A + H ++E ++P + TY L+ L + K+ +
Sbjct: 523 ----ALNSLIDTLYKGGKGNEAWQLFHK-LKEMKIEPTNGTYNTLLSGLGREGKVKEVMQ 577
Query: 572 LLCLMKDHGFPPFV---DPFIKYVSKSGTSDDAIAFLKGMTSKR-FPSMSVVLCLFAAFF 627
LL M +PP + + + +SK+G + AI L MT K P +S +
Sbjct: 578 LLEEMTRTIYPPNLITYNTVLDCLSKNGEVNCAIDMLYSMTEKGCAPDLSSYNTVMYGLI 637
Query: 628 QARRHSEA 635
+ R EA
Sbjct: 638 KEERLEEA 645
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/202 (23%), Positives = 85/202 (42%), Gaps = 4/202 (1%)
Query: 383 VSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIAS 442
+ K + + KV + G T N+++ L+ R+ + + + GF +
Sbjct: 811 MGKSMRVEEMLKVQKEMHRKGYESTYVTYNTIISGLVKSKRLEQAIDLYYNLMSEGFSPT 870
Query: 443 SNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQ 502
+ L +GK +A + M G + ++ L+ GH +AG+ + F+
Sbjct: 871 PCTYGPLLDGLLKSGKMVDAENLFNEMLEYGCEPNCTIYNILLNGHRIAGNTENVCQLFE 930
Query: 503 KMVEKEGTSHAGYAIDLLVNTYCSKNRAIDA-CKFVHNCVREYDLKPWHTTYEELIKNLL 561
KMVE +G + + +L++T C+ R D C F + E L+P Y LI L
Sbjct: 931 KMVE-QGINPDIKSYTILIDTLCTAGRLNDGLCYFRQ--LHELGLEPDLIVYNLLIDGLG 987
Query: 562 VQRGFKDALSLLCLMKDHGFPP 583
++A+SL MK G P
Sbjct: 988 KSERIEEAVSLFNEMKKKGIIP 1009
Score = 49.3 bits (116), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 64/307 (20%), Positives = 119/307 (38%), Gaps = 42/307 (13%)
Query: 300 DESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLY 359
DE +YN + +G+ ++ KV EM KGYE T ++ + +++A+DLY
Sbjct: 800 DEFTYNLILDAMGKSMRVEEMLKVQKEMHRKGYESTYVTYNTIISGLVKSKRLEQAIDLY 859
Query: 360 EFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALI 419
M+ P+ CT+ +L L+
Sbjct: 860 YNLMSEGFSPTP--CTY-----------------------------------GPLLDGLL 882
Query: 420 SVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDK 479
G+M + + M E G + + + + AG + + + M G + K
Sbjct: 883 KSGKMVDAENLFNEMLEYGCEPNCTIYNILLNGHRIAGNTENVCQLFEKMVEQGINPDIK 942
Query: 480 MWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHN 539
+ LI C AG L+ C+ + + + G +LL++ K+ I+ + N
Sbjct: 943 SYTILIDTLCTAGRLNDGL-CYFRQLHELGLEPDLIVYNLLIDGL-GKSERIEEAVSLFN 1000
Query: 540 CVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFV---DPFIKYVSKSG 596
+++ + P TY LI +L +A + + G+ P V + I+ S SG
Sbjct: 1001 EMKKKGIIPNLYTYNSLILHLGKAGKAAEAAQMYEELLRKGWKPSVFTYNALIRGYSVSG 1060
Query: 597 TSDDAIA 603
++D+A A
Sbjct: 1061 STDNAYA 1067
Score = 45.8 bits (107), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 104/523 (19%), Positives = 193/523 (36%), Gaps = 19/523 (3%)
Query: 136 VLKNLESSPD--EARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLVDVMKKK 193
V+ L S+PD EA F + ++ ++++ N ML ++ HG V + + D+M+K+
Sbjct: 71 VVHMLRSAPDPAEALELFTAAARQPTKVHTTESCNYMLELMRAHGRVGDMAQVFDLMQKQ 130
Query: 194 GYGVASHVRNKMTEKFEKEGLESDLEKLK---GIFATGSIDNSIEKVASRICKVVRS--D 248
V F G+E L + + + I +V+S D
Sbjct: 131 ---VVKTNVGTFATIFGGVGVEGGLRSAPVALPVMREAGMSLNAYTYNGLIYFLVKSGFD 187
Query: 249 IWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAE-ESGFVKHDESSYNAM 307
+V + + + ++ S ++ G + + + E E+ VK + SY
Sbjct: 188 AEAMEVYKAMVEDGISPSVRTYSVLMVAFGKKRDVDTVLWLLNEMEARGVKPNVYSYTIC 247
Query: 308 ASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKN 367
VLG+ D + +L +M G + ++ T ++ + + +A ++ A
Sbjct: 248 IRVLGQAARFDEAYHILGKMEDSGCKPDVVTHTVIIQVLCDAGRLSDAKAVFWKMKASDQ 307
Query: 368 KPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGEC 427
KP LL K S D + +V +G +V+ AL VGR+ E
Sbjct: 308 KPDRVTYITLLDKCGDSG--DSQSVVEVWNAMVADGYNDNIVSYTAVVDALCQVGRVDEA 365
Query: 428 NKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKG 487
+ M+E G + + A D A E +HM A G V I
Sbjct: 366 LAVFDEMKEKGMSPEQYSYNSLISGFLKADMFDRALELFNHMNACGPSPNGYTHVLFINY 425
Query: 488 HCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLK 547
+ +G KA ++ M K G A + ++ + R + K V ++ +
Sbjct: 426 YGKSGQSLKAIQRYEHMKSK-GIVPDVAAANAVLYSLAGSGR-LGMAKRVFYELKAMGVS 483
Query: 548 PWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFV---DPFIKYVSKSGTSDDAIAF 604
P TY +IK +A++ M + G P V + I + K G ++A
Sbjct: 484 PDTITYTMMIKCCSKASKADEAMNFFSDMVESGCVPDVLALNSLIDTLYKGGKGNEAWQL 543
Query: 605 LKGMTSKRF-PSMSVVLCLFAAFFQARRHSEAQDLLSKCPRYV 646
+ + P+ L + + + E LL + R +
Sbjct: 544 FHKLKEMKIEPTNGTYNTLLSGLGREGKVKEVMQLLEEMTRTI 586
Score = 45.1 bits (105), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 74/349 (21%), Positives = 141/349 (40%), Gaps = 54/349 (15%)
Query: 297 VKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAV 356
++ +YN + S LGRE + ++L+EM Y + T VL S+ V A+
Sbjct: 552 IEPTNGTYNTLLSGLGREGKVKEVMQLLEEMTRTIYPPNLITYNTVLDCLSKNGEVNCAI 611
Query: 357 DLYEFAMACKN-KPSVNCCTFLLRKIVVSKQLD--MRLFSKVVRVFRENGNVLTDAMLNS 413
D+ ++M K P ++ ++ ++ ++L+ R+F ++ ++ + A L +
Sbjct: 612 DML-YSMTEKGCAPDLSSYNTVMYGLIKEERLEEAFRMFCQMKKILAPD-----YATLCT 665
Query: 414 VLKALISVGRMGEC-----NKILKA------------MEEGGFIASSNMKSKIAF--RLS 454
+L + + G M E ILKA ME G + + ++ I F ++
Sbjct: 666 ILPSFVKNGLMKEALHTVKEYILKAGCNVDKSSFHSLME--GILKKAGVEKSIEFAENIA 723
Query: 455 SAG-------------------KKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLD 495
S G K EA++ + + G + + SLI+G +D
Sbjct: 724 SRGILLNDFFLCPLIRHLCKHKKALEAHQLFNKFKGLGVSLKTGSYNSLIRGLVDENLID 783
Query: 496 KAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEE 555
A D F +M ++ G + +L+++ R + K V + + + TY
Sbjct: 784 IAEDLFTEM-KRLGCGPDEFTYNLILDAMGKSMRVEEMLK-VQKEMHRKGYESTYVTYNT 841
Query: 556 LIKNLLVQRGFKDALSLLCLMKDHGFPP---FVDPFIKYVSKSGTSDDA 601
+I L+ + + A+ L + GF P P + + KSG DA
Sbjct: 842 IISGLVKSKRLEQAIDLYYNLMSEGFSPTPCTYGPLLDGLLKSGKMVDA 890
Score = 40.0 bits (92), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 64/276 (23%), Positives = 101/276 (36%), Gaps = 17/276 (6%)
Query: 398 VFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAG 457
V RE G L N ++ L+ G E ++ KAM E G S S +
Sbjct: 161 VMREAGMSLNAYTYNGLIYFLVKSGFDAEAMEVYKAMVEDGISPSVRTYSVLMVAFGKKR 220
Query: 458 KKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAI 517
D ++ MEA G + I+ A D+A KM E G
Sbjct: 221 DVDTVLWLLNEMEARGVKPNVYSYTICIRVLGQAARFDEAYHILGKM-EDSGCKPDVVTH 279
Query: 518 DLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMK 577
+++ C R DA K V ++ D KP TY L+ + + + M
Sbjct: 280 TVIIQVLCDAGRLSDA-KAVFWKMKASDQKPDRVTYITLLDKCGDSGDSQSVVEVWNAMV 338
Query: 578 DHGFPPFVDPFIKYVS---KSGTSDDAIAFL-----KGMTSKRFPSMSVVLCLFAAFFQA 629
G+ + + V + G D+A+A KGM+ +++ S L + F +A
Sbjct: 339 ADGYNDNIVSYTAVVDALCQVGRVDEALAVFDEMKEKGMSPEQYSYNS----LISGFLKA 394
Query: 630 RRHSEAQDL---LSKCPRYVRNHADVLNLLYSKKSG 662
A +L ++ C + VL + Y KSG
Sbjct: 395 DMFDRALELFNHMNACGPSPNGYTHVLFINYYGKSG 430
>gi|302757525|ref|XP_002962186.1| hypothetical protein SELMODRAFT_76934 [Selaginella moellendorffii]
gi|300170845|gb|EFJ37446.1| hypothetical protein SELMODRAFT_76934 [Selaginella moellendorffii]
Length = 855
Score = 63.2 bits (152), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 72/282 (25%), Positives = 118/282 (41%), Gaps = 7/282 (2%)
Query: 303 SYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFA 362
SYN + S L D +D +K + M G E ++ ++ F + + L A
Sbjct: 57 SYNTVISGLASIDKMDEAYKFFNSMIDNGCEPDVIAFTTLIHGFCKAGQPQVGHMLLNQA 116
Query: 363 MACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVG 422
+ + +P V T ++ + LD K++ G + A ++ L +G
Sbjct: 117 LK-RFRPDVFLYTSVIHGYCKAGDLDTGF--KILEEMLAAGCIPDAAAYFVLIDPLCKLG 173
Query: 423 RMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWV 482
R+ E ++ + M + G + + LS+ GK DEA E M G + ++
Sbjct: 174 RVDEAYELFERMRKSGCLGDYVTFMTLIEALSNHGKLDEACELYREMIERGYEPYLEVQD 233
Query: 483 SLIKGHCVAGDLDKAADCFQKMVEKE-GTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCV 541
SLI C AG +D+A + +Q +V K+ TS Y + L++ YC R D K + V
Sbjct: 234 SLIFALCKAGKVDEANEIYQTVVAKKVATSRVAY--NSLMDGYCKLGRVDDGLKLLLQMV 291
Query: 542 REYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPP 583
E D P TY L+ DAL L L+ +G P
Sbjct: 292 -ECDNFPDIQTYNILVAGFSRANRLDDALELFKLLSSYGCKP 332
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 74/162 (45%), Gaps = 2/162 (1%)
Query: 399 FRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGK 458
R++G + ++++AL + G++ E ++ + M E G+ ++ + F L AGK
Sbjct: 185 MRKSGCLGDYVTFMTLIEALSNHGKLDEACELYREMIERGYEPYLEVQDSLIFALCKAGK 244
Query: 459 KDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAID 518
DEANE + A + SL+ G+C G +D +MVE + +
Sbjct: 245 VDEANEIYQTVVAKKVATSRVAYNSLMDGYCKLGRVDDGLKLLLQMVECDNFPDI-QTYN 303
Query: 519 LLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNL 560
+LV + NR DA + + + Y KP TY +I+ L
Sbjct: 304 ILVAGFSRANRLDDALE-LFKLLSSYGCKPNAATYTTIIQGL 344
Score = 44.3 bits (103), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 59/284 (20%), Positives = 107/284 (37%), Gaps = 3/284 (1%)
Query: 300 DESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLY 359
D +Y + + +D K+LD M +KG E T ++ F + +M+ EA ++
Sbjct: 467 DTITYTTLIDGFSKASKMDEARKLLDVMLTKGPEPTAVTYGSIVHGFCKLDMINEAKEVI 526
Query: 360 EFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALI 419
+P + T LL + + + +V+ G + S++ L
Sbjct: 527 AQMRERGCEPGLFIFTSLLSYYLSKGRAEEAY--QVLTEMTARGCAPDVILYTSLIDLLF 584
Query: 420 SVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDK 479
S GR+ E + +M E G + I S G + A E ++ M SG
Sbjct: 585 STGRVPEARHVFDSMIEKGCAPDALTYGTIIQNFSKIGNVEAAGEILELMAKSGVGPDCF 644
Query: 480 MWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHN 539
+ SL+ G+ +D+A + +MV G ++L++ + A
Sbjct: 645 AYNSLMDGYVKLERVDQAFGVYDRMV-ASGIKPNAVTFNVLMHGLFKDGKTDRAFSLFKE 703
Query: 540 CVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPP 583
+ + ++ P +Y LI L +A S M D G P
Sbjct: 704 MLEKDEVPPTLVSYTILIDGLGKAGRVSEAFSQFQEMIDRGIIP 747
Score = 42.0 bits (97), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 41/181 (22%), Positives = 79/181 (43%), Gaps = 2/181 (1%)
Query: 352 VKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAML 411
V +A +Y+ +A KP+ L+ + + D R FS + ++ T
Sbjct: 659 VDQAFGVYDRMVASGIKPNAVTFNVLMHGLFKDGKTD-RAFSLFKEMLEKDEVPPTLVSY 717
Query: 412 NSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEA 471
++ L GR+ E + M + G I + + + + L+ AG+ EA + ++ M
Sbjct: 718 TILIDGLGKAGRVSEAFSQFQEMIDRGIIPECHTYTSLIYSLAKAGRIPEAKKLVEDMVK 777
Query: 472 SGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAI 531
G + + + +LI G + +D A D FQ+M+ K G + +L + + RA+
Sbjct: 778 LGVNPDVQAYSALITGLIDSSMVDTAWDVFQEMM-KRGCAPNEVTYKVLRRGFRAAGRAL 836
Query: 532 D 532
D
Sbjct: 837 D 837
Score = 40.0 bits (92), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 40/192 (20%), Positives = 82/192 (42%), Gaps = 3/192 (1%)
Query: 342 VLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRE 401
V+ ++ + EA +L+E P+V T ++ ++ + +++ L K
Sbjct: 369 VIKGLADSKRIDEACELFEKLKTAGCSPNVVAYTAVIDGLLKAGRIEDGL--KNFEDMSG 426
Query: 402 NGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDE 461
+ V T V+ L + + K+ + M + G + + + + S A K DE
Sbjct: 427 SSCVPTRTTYTVVIDGLCKAQMLPDACKVFEQMVQKGCVPDTITYTTLIDGFSKASKMDE 486
Query: 462 ANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLV 521
A + +D M G + + S++ G C +++A + +M E+ G + L+
Sbjct: 487 ARKLLDVMLTKGPEPTAVTYGSIVHGFCKLDMINEAKEVIAQMRER-GCEPGLFIFTSLL 545
Query: 522 NTYCSKNRAIDA 533
+ Y SK RA +A
Sbjct: 546 SYYLSKGRAEEA 557
>gi|115459104|ref|NP_001053152.1| Os04g0488500 [Oryza sativa Japonica Group]
gi|113564723|dbj|BAF15066.1| Os04g0488500 [Oryza sativa Japonica Group]
Length = 801
Score = 63.2 bits (152), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 80/352 (22%), Positives = 147/352 (41%), Gaps = 32/352 (9%)
Query: 283 KALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKV 342
KA + GFV D S+Y+ + + L +++ + + EM+ G ++ T +
Sbjct: 271 KAFQLIKEMMRKGFVP-DTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTPDVYTYTIL 329
Query: 343 LGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMR--LFSKVVRVFR 400
+ F + ++++A L+E + P+V T L+ + +KQ+ +F ++V
Sbjct: 330 IDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDAGC 389
Query: 401 ENGNVLTDAMLNSVLKA------------LISVGRMGECNKILKAMEEGGFIASSNMKSK 448
+V A+++ + KA LI + + + +
Sbjct: 390 RPNDVTYGALVDGLCKAGNISKAFEVYAKLIGTSDSADSDFYFPCEDRHTLAPNVVTYGA 449
Query: 449 IAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKE 508
+ L A K D A+E +D M +SG + ++ +LI G C AG +D A + F +M +
Sbjct: 450 LVDGLCKAHKVDHAHELLDAMLSSGCEPNHIVYDALIDGFCKAGKIDSAQEVFLQMTK-- 507
Query: 509 GTSHAGYAIDLLVNTYCS------KNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLV 562
GY V+TY S K+ +D V + + + P TY +I L
Sbjct: 508 ----CGYLPS--VHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCTPNVVTYTAMIDGLCR 561
Query: 563 QRGFKDALSLLCLMKDHGFPPFVDPF---IKYVSKSGTSDDAIAFLKGMTSK 611
+ AL LL LM++ G P V + I + K+G D ++ M+ K
Sbjct: 562 IGESEKALKLLSLMEEKGCSPNVVTYTALIDGLGKAGKIDLSLDLFTQMSRK 613
Score = 50.1 bits (118), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 54/215 (25%), Positives = 92/215 (42%), Gaps = 10/215 (4%)
Query: 287 FFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRF 346
F+ E+ + + +Y A+ L + +D ++LD M S G E ++ F
Sbjct: 430 FYFPCEDRHTLAPNVVTYGALVDGLCKAHKVDHAHELLDAMLSSGCEPNHIVYDALIDGF 489
Query: 347 SERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLD--MRLFSKVVRVFRENGN 404
+ + A +++ C PSV+ T L+ ++ +LD M++ S++++
Sbjct: 490 CKAGKIDSAQEVFLQMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCTPNV 549
Query: 405 VLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAF--RLSSAGKKDEA 462
V AM++ L +G + K+L MEE G S N+ + A L AGK D +
Sbjct: 550 VTYTAMID----GLCRIGESEKALKLLSLMEEKG--CSPNVVTYTALIDGLGKAGKIDLS 603
Query: 463 NEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKA 497
+ M G + LI C AG LDKA
Sbjct: 604 LDLFTQMSRKGCSPNYVTYRVLINHLCAAGLLDKA 638
Score = 41.2 bits (95), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 37/156 (23%), Positives = 64/156 (41%), Gaps = 2/156 (1%)
Query: 405 VLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANE 464
VL + + + L VG+ + +++K M GF+ ++ SK+ L A K ++A
Sbjct: 250 VLNKVNVANFARCLCGVGKFDKAFQLIKEMMRKGFVPDTSTYSKVITFLCHATKVEKAFL 309
Query: 465 FMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTY 524
M+ G + LI C AG +++A F++M G S L++ Y
Sbjct: 310 LFQEMKMVGVTPDVYTYTILIDSFCKAGLIEQAQWLFEEM-RSVGCSPTVVTYTALIHAY 368
Query: 525 CSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNL 560
+ A H V + +P TY L+ L
Sbjct: 369 LKAKQVPQANDIFHRMV-DAGCRPNDVTYGALVDGL 403
>gi|413953163|gb|AFW85812.1| hypothetical protein ZEAMMB73_202457 [Zea mays]
Length = 731
Score = 63.2 bits (152), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 122/563 (21%), Positives = 199/563 (35%), Gaps = 93/563 (16%)
Query: 48 LPTSSHTFYSRFSRLP--ICYSRLINLIDPKNPNFRNPMICSYSSEPAMEQKESDFTVVS 105
LPT+S S F LP +C+ R + L+ P + +I SY+S P + +
Sbjct: 89 LPTASRLVAS-FPPLPLLVCFLRALRLLPSSPPRPFDSLIKSYASLPNRASLAAAALAFA 147
Query: 106 DIFYKFSDVNDISKQLELSGVVFTHEMVLKVLKNLESSPDEARRFFNWVLEKESERLSSK 165
V + VL L ++S ARRFF+ +L + +
Sbjct: 148 RSAGYVPSV-------------LAYNAVLLALS--DASLTSARRFFDSMLS-DGVAPNVY 191
Query: 166 TYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRNKMTEKFEKEGLESDLEKLKGIF 225
TYN+++R + G +E ++ M+ G G N + F F
Sbjct: 192 TYNILVRALCGRGHRKEALSILRDMRGAGCGPNVVTYNTLVAAF---------------F 236
Query: 226 ATGSIDNSIEKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKAL 285
G +D A R+ ++R E L+ VTF N +V + K G
Sbjct: 237 RAGEVDG-----AERLVGMMR--------EGGLKPNLVTF-NSMVNGMC-KAGKMEDARK 281
Query: 286 IFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGR 345
+F E + D SYN + + C V EM KG ++ T ++
Sbjct: 282 VFDEMVREG--LAPDGVSYNTLVGGYCKAGCSHEALSVFAEMTQKGIMPDVVTFTSLIHV 339
Query: 346 FSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNV 405
+ ++ AV L VR RE G
Sbjct: 340 MCKAGNLERAVTL-------------------------------------VRQMRERGLQ 362
Query: 406 LTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEF 465
+ + +++ G + + ++ M++ S + + G+ DEA E
Sbjct: 363 MNEVTFTALIDGFCKKGFLDDALLAVRGMKQCRIKPSVVCYNALINGYCMVGRMDEAREL 422
Query: 466 MDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYC 525
+ MEA G + ++I +C D A + Q+M+EK G L+ C
Sbjct: 423 LHEMEAKGLKPDVVTYSTIISAYCKNCDTHSAFELNQQMLEK-GVLPDAITYSSLIRVLC 481
Query: 526 SKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFV 585
+ R DA N ++ L+P TY LI + + ALSL M G P V
Sbjct: 482 GEKRLSDAHVLFKNMIK-LGLQPDEFTYTSLIDGHCKEGNVESALSLHDKMVKAGVLPDV 540
Query: 586 DPF---IKYVSKSGTSDDAIAFL 605
+ I +SKS + +A L
Sbjct: 541 VTYSVLINGLSKSARAMEAQQLL 563
Score = 46.6 bits (109), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 57/249 (22%), Positives = 100/249 (40%), Gaps = 41/249 (16%)
Query: 395 VVRVFRENG---NVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAF 451
++R R G NV+T N+++ A G + +++ M EGG + + +
Sbjct: 212 ILRDMRGAGCGPNVVT---YNTLVAAFFRAGEVDGAERLVGMMREGGLKPNLVTFNSMVN 268
Query: 452 RLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTS 511
+ AGK ++A + D M G + +L+ G+C AG +A F +M +K
Sbjct: 269 GMCKAGKMEDARKVFDEMVREGLAPDGVSYNTLVGGYCKAGCSHEALSVFAEMTQK---- 324
Query: 512 HAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALS 571
G D++ T +H + +L+ T + + +RG +
Sbjct: 325 --GIMPDVVTFT-----------SLIHVMCKAGNLERAVTLVRQ-----MRERGLQ---- 362
Query: 572 LLCLMKDHGFPPFVDPFIKYVSKSGTSDDAIAFLKGMTSKRF-PSMSVVLCLFAAFFQAR 630
M + F +D F K G DDA+ ++GM R PS+ L +
Sbjct: 363 ----MNEVTFTALIDGF----CKKGFLDDALLAVRGMKQCRIKPSVVCYNALINGYCMVG 414
Query: 631 RHSEAQDLL 639
R EA++LL
Sbjct: 415 RMDEARELL 423
>gi|313851107|ref|NP_001186539.1| pentatricopeptide repeat protein [Zea mays]
gi|312064725|gb|ADQ27447.1| pentatricopeptide repeat protein [Zea mays]
gi|414872960|tpg|DAA51517.1| TPA: hypothetical protein ZEAMMB73_325693 [Zea mays]
Length = 489
Score = 63.2 bits (152), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 94/463 (20%), Positives = 189/463 (40%), Gaps = 50/463 (10%)
Query: 117 ISKQLELSGVVFTHEMVLKVLKNLESSPDEARRFFNWVLEKESERLSS--KTYNLMLRIV 174
+ +L+ SGV T E+ VLK+L+++ A RFF W +++ + ++Y+ ++ +
Sbjct: 57 LEHELDHSGVRVTPEIAESVLKHLDNAGMLAYRFFEWARKQKRGVCAHTVRSYHTVVTSL 116
Query: 175 GVHGLVQEFWGLVDVMKKKGYGVASHVRNKMTEKFEKEGLESDLEKLKGIFATGSIDN-- 232
Q W +V +M+K+G M + + L+ + + G N
Sbjct: 117 AKIRQYQLMWDVVAIMRKEGVANVETFGIIMRKYARAQKLDEAVYTFNVMEKYGVAHNLA 176
Query: 233 SIEKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAE 292
+ + S +CK + +R F DK+ +
Sbjct: 177 AFNSLLSALCK-----------SKNVRKAQEIF---------DKMNNR------------ 204
Query: 293 ESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMV 352
D +Y+ + GR + + +V +M + G + ++ T ++ + V
Sbjct: 205 ----FSPDAKTYSILLEGWGRAPSLPKMREVYSDMLAAGCQPDIVTYGIMVDALCKTGRV 260
Query: 353 KEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVF-RENGNVLTDAML 411
+EAV + + + +P+ TF+ +V + +DMR+ V E ++ D ++
Sbjct: 261 EEAVCVVQDMSSRGCQPT----TFIYSILVHTYGVDMRIEDAVAAFLDMEKDGIMPDVVV 316
Query: 412 -NSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHME 470
N+++ A V + +++ M+ G +S + I L S GK DEA M
Sbjct: 317 YNALITAFCKVKKFENAFRVMDDMQGHGISPNSRTWNIILNTLISLGKDDEAYRVFRSMI 376
Query: 471 ASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRA 530
D + +IK C ++ A ++ M K+ + + +L+N C K
Sbjct: 377 KRCKPDSDT-YTMMIKMFCENDKIEMALKVWKYMRLKQFLP-SMHTFSVLINGLCDKGEV 434
Query: 531 IDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLL 573
AC + + + E ++P +T+ +L + LL++ G KD L L
Sbjct: 435 SQACVLLEDMI-EKGIRPPGSTFGKL-RQLLLKEGRKDVLDFL 475
Score = 48.5 bits (114), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 72/357 (20%), Positives = 132/357 (36%), Gaps = 45/357 (12%)
Query: 229 SIDNSIEKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFF 288
S+D S ++ R+CK++ S +E +L V + ++ + V+ L + A FF
Sbjct: 34 SVDAS--DLSKRLCKLIISCRKASALEHELDHSGVRVTPEIAESVLKHLDNAGMLAYRFF 91
Query: 289 RWA--EESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRF 346
WA ++ G H SY+ + + L + W V+ MR +G
Sbjct: 92 EWARKQKRGVCAHTVRSYHTVVTSLAKIRQYQLMWDVVAIMRKEGV-------------- 137
Query: 347 SERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVL 406
+V ++RK +++LD +++ V + G
Sbjct: 138 ----------------------ANVETFGIIMRKYARAQKLDEAVYT--FNVMEKYGVAH 173
Query: 407 TDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFM 466
A NS+L AL + + +I M F + S + A + E
Sbjct: 174 NLAAFNSLLSALCKSKNVRKAQEIFDKMNN-RFSPDAKTYSILLEGWGRAPSLPKMREVY 232
Query: 467 DHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCS 526
M A+G + ++ C G +++A Q M + G + +LV+TY
Sbjct: 233 SDMLAAGCQPDIVTYGIMVDALCKTGRVEEAVCVVQDMSSR-GCQPTTFIYSILVHTYGV 291
Query: 527 KNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPP 583
R DA + ++ + P Y LI + F++A ++ M+ HG P
Sbjct: 292 DMRIEDAVAAFLDMEKD-GIMPDVVVYNALITAFCKVKKFENAFRVMDDMQGHGISP 347
>gi|255557743|ref|XP_002519901.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223540947|gb|EEF42505.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 777
Score = 63.2 bits (152), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 75/337 (22%), Positives = 138/337 (40%), Gaps = 14/337 (4%)
Query: 248 DIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAM 307
++W +E+ VT SN L+ + + E L+ + E G V D SYN +
Sbjct: 428 ELWYRLLEKGFAANTVT-SNALIHGLCEAGSKEEAAKLL--KEMLERGLVL-DSISYNTL 483
Query: 308 ASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKN 367
+E ++ +K+ +EM +G + +M T +L ++EA L+ N
Sbjct: 484 ILACCKEGKVEEGFKLKEEMVRRGIQPDMYTYNMLLHGLCNMGKIEEAGGLWHECKKNGN 543
Query: 368 KPSVNCCTFLLRKIVVSKQLDM--RLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMG 425
P ++ + +++ +LF ++V + E V+ ++++A G M
Sbjct: 544 FPDAYTYGIMIDGYCKANRVEEGEKLFQEMVTMKIEQNAVV----YGTLIRAYCENGNMR 599
Query: 426 ECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLI 485
E ++ M G +S S + LS+ G D AN+ +D M G + +LI
Sbjct: 600 EAFRLRDDMRSRGIPQTSATYSSLIHGLSNIGLVDSANQLLDEMRKEGLSPNVVCYTALI 659
Query: 486 KGHCVAGDLDKAADCFQKM-VEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREY 544
G+C G + K Q+M + + Y I ++N +C A K + N + +
Sbjct: 660 GGYCKLGQMHKVDSILQEMSINNVHPNKITYTI--MINGHCKLGNMKAAAKLL-NEMAQK 716
Query: 545 DLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGF 581
+ P TY L + ++AL + LM G
Sbjct: 717 GIVPDAVTYNALTNGFCKEGKMEEALKVCDLMSTGGI 753
Score = 54.7 bits (130), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 54/257 (21%), Positives = 108/257 (42%), Gaps = 10/257 (3%)
Query: 304 YNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAM 363
YN + R I ++ D+M S G TC ++ + + N ++ A L E +
Sbjct: 305 YNTLIDGYCRIGNISTALQIRDDMISNGISPNSVTCNSLIQGYCKSNQMEHAEHLLEEML 364
Query: 364 ACKNKPSVNCCTFLLRKIVVSKQLDMRLF---SKVVRVFRENGNVLTDAMLNSVLKALIS 420
+ T ++ ++ + + D L ++R F+ N D +L ++ L
Sbjct: 365 TGGGVINQGTFTSVIHRLCLKCRFDSALLFIMEMLLRNFKPN-----DGLLTLLVSGLCQ 419
Query: 421 VGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKM 480
G+ E ++ + E GF A++ + + L AG K+EA + + M G +
Sbjct: 420 NGKQSEAIELWYRLLEKGFAANTVTSNALIHGLCEAGSKEEAAKLLKEMLERGLVLDSIS 479
Query: 481 WVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNC 540
+ +LI C G +++ ++MV + G Y ++L++ C+ + +A H C
Sbjct: 480 YNTLILACCKEGKVEEGFKLKEEMV-RRGIQPDMYTYNMLLHGLCNMGKIEEAGGLWHEC 538
Query: 541 VREYDLKPWHTTYEELI 557
+ + P TY +I
Sbjct: 539 KKNGNF-PDAYTYGIMI 554
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 80/375 (21%), Positives = 146/375 (38%), Gaps = 24/375 (6%)
Query: 281 PKKALIFFRWAEESGF--------VKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGY 332
P+ A FF +A E+ F V Y+ LG +++ + +KG
Sbjct: 103 PRTAFNFFHFASETLFEPAVAVTVVDLLIHVYSTQFKHLG----FGVVFELFSLLANKGL 158
Query: 333 EMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLD--MR 390
++TC +L + N VK + +++ C P V + ++ ++D +
Sbjct: 159 FPSLKTCNFLLSSLVKANEVKMSYQVFDIMCHCGVTPDVYLFSTMVNAFCTGGRVDDAIE 218
Query: 391 LFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIA 450
LF K+ +V NV+T N+++ L GR+ E + + ME+ S +
Sbjct: 219 LFRKMEKVGVA-PNVVT---YNNIIHGLCKNGRLDEAFQFKEKMEKERVKPSLVTYGVLI 274
Query: 451 FRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGT 510
L + DEAN + M G + ++ +LI G+C G++ A M+ G
Sbjct: 275 NGLVKLERFDEANCILKEMSDRGYAPNNVVYNTLIDGYCRIGNISTALQIRDDMISN-GI 333
Query: 511 SHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDAL 570
S + L+ YC N+ A + + + T+ +I L ++ F AL
Sbjct: 334 SPNSVTCNSLIQGYCKSNQMEHAEHLLEEMLTGGGVIN-QGTFTSVIHRLCLKCRFDSAL 392
Query: 571 SLLCLMKDHGFPP---FVDPFIKYVSKSGTSDDAIAFLKGMTSKRFPSMSVVL-CLFAAF 626
+ M F P + + + ++G +AI + K F + +V L
Sbjct: 393 LFIMEMLLRNFKPNDGLLTLLVSGLCQNGKQSEAIELWYRLLEKGFAANTVTSNALIHGL 452
Query: 627 FQARRHSEAQDLLSK 641
+A EA LL +
Sbjct: 453 CEAGSKEEAAKLLKE 467
Score = 44.7 bits (104), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 61/311 (19%), Positives = 128/311 (41%), Gaps = 9/311 (2%)
Query: 305 NAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMA 364
N + S L + + + ++V D M G ++ ++ F V +A++L+
Sbjct: 166 NFLLSSLVKANEVKMSYQVFDIMCHCGVTPDVYLFSTMVNAFCTGGRVDDAIELFRKMEK 225
Query: 365 CKNKPSVNCCTFLLRKIVVSKQLDMRL-FSKVVRVFRENGNVLTDAMLNSVLKALISVGR 423
P+V ++ + + +LD F + + R +++T +L + L+ + R
Sbjct: 226 VGVAPNVVTYNNIIHGLCKNGRLDEAFQFKEKMEKERVKPSLVTYGVL---INGLVKLER 282
Query: 424 MGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVS 483
E N ILK M + G+ ++ + + + G A + D M ++G S
Sbjct: 283 FDEANCILKEMSDRGYAPNNVVYNTLIDGYCRIGNISTALQIRDDMISNGISPNSVTCNS 342
Query: 484 LIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVRE 543
LI+G+C + ++ A ++M+ G + G +++ C K R A F+ +
Sbjct: 343 LIQGYCKSNQMEHAEHLLEEMLTGGGVINQG-TFTSVIHRLCLKCRFDSALLFIMEMLLR 401
Query: 544 YDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFV---DPFIKYVSKSGTSDD 600
+ KP L+ L +A+ L + + GF + I + ++G+ ++
Sbjct: 402 -NFKPNDGLLTLLVSGLCQNGKQSEAIELWYRLLEKGFAANTVTSNALIHGLCEAGSKEE 460
Query: 601 AIAFLKGMTSK 611
A LK M +
Sbjct: 461 AAKLLKEMLER 471
Score = 40.0 bits (92), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 44/193 (22%), Positives = 78/193 (40%), Gaps = 2/193 (1%)
Query: 393 SKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFR 452
+K+++ E G VL N+++ A G++ E K+ + M G + +
Sbjct: 462 AKLLKEMLERGLVLDSISYNTLILACCKEGKVEEGFKLKEEMVRRGIQPDMYTYNMLLHG 521
Query: 453 LSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSH 512
L + GK +EA + +G+ + +I G+C A +++ FQ+MV + +
Sbjct: 522 LCNMGKIEEAGGLWHECKKNGNFPDAYTYGIMIDGYCKANRVEEGEKLFQEMVTMKIEQN 581
Query: 513 AGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSL 572
A L+ YC +A + + +R + TY LI L A L
Sbjct: 582 A-VVYGTLIRAYCENGNMREAFRLRDD-MRSRGIPQTSATYSSLIHGLSNIGLVDSANQL 639
Query: 573 LCLMKDHGFPPFV 585
L M+ G P V
Sbjct: 640 LDEMRKEGLSPNV 652
>gi|147778634|emb|CAN76112.1| hypothetical protein VITISV_005527 [Vitis vinifera]
Length = 1494
Score = 63.2 bits (152), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 76/368 (20%), Positives = 155/368 (42%), Gaps = 18/368 (4%)
Query: 281 PKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCV 340
P+ A AEE G + D S + + G+ + ++ +R K ++ +
Sbjct: 759 PETAHYLIDQAEEKGLLFDDVSIHTGVIEAYGKLKLWQKAESLVGSLRQKCTMVDRKVWN 818
Query: 341 KVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFR 400
++ ++ + A ++ M P+V+ L++ ++V +LD L+ V++ +
Sbjct: 819 ALIHAYAASGCYERARAIFNTMMRDGPSPTVDSVNGLMQALIVDGRLD-ELYV-VIQELQ 876
Query: 401 ENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKD 460
+ G ++ + + +L A G + E KI + M+ G+ + ++ +I L + GK+
Sbjct: 877 DMGFKISKSSITLMLDAFAHAGNIFEVKKIYQGMKAAGYFPTMHL-YRIMIGLLAKGKRV 935
Query: 461 EANEFM-DHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDL 519
E M ME + +W S++K + GD K +Q ++++ G +
Sbjct: 936 RDVEAMVSEMEVAXFKPDLSIWNSVLKLYTGIGDFKKTGQVYQ-LIQEAGLKPDEDTYNT 994
Query: 520 LVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELI----KNLLVQRG---FKDALSL 572
L+ YC R + +H +R L+P TY+ LI K +V++ F+ LS
Sbjct: 995 LILMYCRDRRPEEGLSLMHE-MRRVGLEPKLDTYKSLISAFGKLQMVEQAEELFEGLLSK 1053
Query: 573 LCLMKDHGFPPFVDPFIKYVSKSGTSDDAIAFLKGMTSKRF-PSMSVVLCLFAAFFQARR 631
C + F +K SG A L M P+++ + L ++ + +
Sbjct: 1054 ECKLDR----SFYHIMMKMFRNSGNHSKAEKLLGVMKEAGVEPTIATMHLLMVSYSGSGQ 1109
Query: 632 HSEAQDLL 639
EA+ +L
Sbjct: 1110 PEEAEKVL 1117
Score = 56.6 bits (135), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 70/368 (19%), Positives = 161/368 (43%), Gaps = 50/368 (13%)
Query: 145 DEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRNK 204
+ AR FN ++ ++ + + N +++ + V G + E + ++ ++ G+ ++
Sbjct: 831 ERARAIFNTMM-RDGPSPTVDSVNGLMQALIVDGRLDELYVVIQELQDMGFKISKSSITL 889
Query: 205 MTEKFEKEGLESDLEKL------KGIFATGSIDNSIEKVASRICKVVRSDIWGDDVERQL 258
M + F G +++K+ G F T + + + ++ +V + ++E
Sbjct: 890 MLDAFAHAGNIFEVKKIYQGMKAAGYFPTMHLYRIMIGLLAKGKRVRDVEAMVSEMEVAX 949
Query: 259 RDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCID 318
+++ N ++K +GD K ++ + +E+G +K DE +YN + + R+ +
Sbjct: 950 FKPDLSIWNSVLKLYTG-IGDFKKTGQVY-QLIQEAG-LKPDEDTYNTLILMYCRDRRPE 1006
Query: 319 RFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLL 378
++ EMR G E +++T ++ F + MV++A +L+E + S C
Sbjct: 1007 EGLSLMHEMRRVGLEPKLDTYKSLISAFGKLQMVEQAEELFEGLL------SKEC----- 1055
Query: 379 RKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGG 438
+LD + ++++FR +GN + K+L M+E G
Sbjct: 1056 -------KLDRSFYHIMMKMFRNSGN-------------------HSKAEKLLGVMKEAG 1089
Query: 439 FIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAA 498
+ + S +G+ +EA + +D+++ G + + S+I + GD + A
Sbjct: 1090 VEPTIATMHLLMVSYSGSGQPEEAEKVLDNLKVEGLPLSTLPYSSVIDAYLKNGDHNVA- 1148
Query: 499 DCFQKMVE 506
QK++E
Sbjct: 1149 --IQKLME 1154
Score = 47.4 bits (111), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 85/452 (18%), Positives = 161/452 (35%), Gaps = 76/452 (16%)
Query: 269 LVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMR 328
++ ++ LG ++AL +A + YNAM V R + ++LD MR
Sbjct: 222 MLATILSVLGKANQEALAVEIFARAEAAXGNTVQVYNAMMGVYARTGRFTKVQELLDLMR 281
Query: 329 SKGYE------------------MEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPS 370
S+G E M +++L + + + AC + +
Sbjct: 282 SRGCEPDLVSFNTLINARLKSGTMVTNLAIELLNEVRRSGIQPDIITYNTLISACSRESN 341
Query: 371 VNCCTFLLRKIVVSK-QLDMRLFSKVVRVF------RENGNVLTD----------AMLNS 413
+ + +V + Q D+ ++ ++ V+ RE G + D NS
Sbjct: 342 LEEAVKVYNDMVAHRCQPDLWTYNAMISVYGRCGMSREAGRLFKDLESKGFLPDAVTYNS 401
Query: 414 VLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASG 473
+L A G + + +I + M + GF + I G+ D A + M+ SG
Sbjct: 402 LLYAFAREGNVDKVKEICEDMVKMGFGKDEMTYNTIIHMYGKRGQHDLAFQLYSDMKLSG 461
Query: 474 SDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDA 533
+ LI A + +AA+ +M+ L+ Y + ++A
Sbjct: 462 RSPDAVTYTVLIDSLGKANMIKEAAEVMSEMLNAX-VKPTLRTFSALICGYAKAGKRVEA 520
Query: 534 CKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPP---FVDPFIK 590
+ +C+ +KP H Y ++ LL A+ L M H F P + ++
Sbjct: 521 -EETFDCMLRSGIKPDHLAYSVMLDILLRFNESGKAMKLYQEMVLHSFKPDHALYEVMLR 579
Query: 591 YVSKSGTSDDAIAFLK------GMTSKRFPSMSV-------------------------- 618
+ K +D +K GM S+ S+ V
Sbjct: 580 VLGKENREEDVHKVVKDMEELCGMNSQVICSILVKGECFDHAANMLRLAISQGCELDREN 639
Query: 619 VLCLFAAFFQARRHSEAQDLLSKCPRYVRNHA 650
+L + ++ + RH EA++LL ++R H+
Sbjct: 640 LLSILGSYGSSGRHLEARELLD----FLREHS 667
>gi|414869157|tpg|DAA47714.1| TPA: hypothetical protein ZEAMMB73_516901 [Zea mays]
Length = 853
Score = 63.2 bits (152), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 84/356 (23%), Positives = 145/356 (40%), Gaps = 30/356 (8%)
Query: 250 WGDDVERQLRDLNVTF----SNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYN 305
WG E L +L+ +N ++K + D AL FF+W + KHD +Y
Sbjct: 310 WGPMTEHVLDNLHCKIDAFQANQVLKLLHDH-----TVALGFFQWLKRQPGFKHDGHTYT 364
Query: 306 AMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMAC 365
M +LG+ ++LDEM + + T +++ + N +KEAV ++E
Sbjct: 365 TMIGILGQARQFGVLKELLDEMSRAHCKPTVVTYNRIIHAYGRANYLKEAVKVFEEMQEA 424
Query: 366 KNKPS-VNCCTFL-LRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGR 423
+P V CT + + + M L+ ++ V M+N + K G+
Sbjct: 425 GYEPDRVTYCTLIDIHAKAGYLDIAMDLYGRMQEVGLSPDTFTYSVMVNCLGKG----GQ 480
Query: 424 MGECNKILKAMEEGGFIASSNMKS---KIAFRLSSAGKKDEANEFMDHMEASGSDVGDKM 480
+ K+ M E G + N+ + IA + + ++ + D M+ +G DK+
Sbjct: 481 LAAAYKLFCEMIENG--CTPNLVTYNIMIALQAKARNYENVVKLYKD-MQVAGFRP-DKI 536
Query: 481 WVSLIK---GHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFV 537
S++ GHC G LD+A F +M Y LLV+ + K +D
Sbjct: 537 TYSIVMEVLGHC--GHLDEAEAVFIEMRRDWAPDEPVYG--LLVDLW-GKAGNVDKALGW 591
Query: 538 HNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPFIKYVS 593
+ + + L+P T L+ L F+DA +L M G P V + +S
Sbjct: 592 YQAMLQDGLQPNVPTCNSLLSAFLKMNRFQDAYIVLQNMLARGLVPSVQTYTLLLS 647
>gi|449476381|ref|XP_004154721.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g17140-like [Cucumis sativus]
Length = 875
Score = 63.2 bits (152), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 115/545 (21%), Positives = 208/545 (38%), Gaps = 80/545 (14%)
Query: 166 TYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRNKMTEKFEKEGLES-DLEKLKGI 224
T+NL++ + G ++ + D M +KG + + + GL S ++ L +
Sbjct: 155 TFNLLISALCEMGYLENAREVFDKMSEKGCKPNEFSLGILVRGYCRAGLHSHGIDLLDEM 214
Query: 225 FATGSIDNSI--EKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKF-----VVDKL 277
++G++ N + V S +C ++ + + + ++R+ V S D+V F + K
Sbjct: 215 RSSGALPNRVAYNTVISSLCGEGQT-VEAEKLVEKMRE--VGLSPDIVTFNCRIAALCKS 271
Query: 278 GDEPKKALIF--FRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEME 335
G + + IF + EE G K + +YN M E + + D M++
Sbjct: 272 GQILEASRIFRDMQIDEEMGLPKPNTVTYNLMLEGFCSEGMFEEARAIFDSMKNSETLSL 331
Query: 336 METCVKVLGRFSERNMVKEAVDLYEFAMACKN-KPSVNCCTFLLRKIVVSKQL-DMRLFS 393
+ +LG +++ + L E MA KN KP++ L+ + D R
Sbjct: 332 RSYNIWMLGLVRSGKLLEAHLILNE--MAEKNIKPNLYSYNILVHGLCKYGMFSDAR--- 386
Query: 394 KVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRL 453
++ + RE+G +++L G++ E N +L+ M + G + + + L
Sbjct: 387 SILGLMRESGVAPDTVTYSTLLHGYCRRGKILEANYVLREMIQVGCFPNMYTCNILLHSL 446
Query: 454 SSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHA 513
G+ EA + + M G + + ++I G C AG+LDKA + M + S
Sbjct: 447 WKEGRASEAEDLLQMMNERGYGLDNVTCNTMINGLCKAGNLDKAIEIVSGMWTRGSASLG 506
Query: 514 GYA---IDL-------------------LVNTYCSKNRAIDACK---------------- 535
IDL ++ C R +A K
Sbjct: 507 NLGNSFIDLFDIRNNGKKCLPDSITYATIIGGLCKVGRVDEAKKKLLEMIGKKLSPDSLI 566
Query: 536 ---FVHNCVREYDLKPWH---------------TTYEELIKNLLVQRGFKDALSLLCLMK 577
F++N ++ L TY LI+ L + + L+ MK
Sbjct: 567 FDTFIYNYCKQGKLSSAFRVLKEMEKKGCNKSLRTYNSLIQGLGSENQIFEIYGLMDEMK 626
Query: 578 DHGFPPFV---DPFIKYVSKSGTSDDAIAFLKGMTSKRF-PSMSVVLCLFAAFFQARRHS 633
+ G P V + I +S+ G DA L M K P++ L AFF+A
Sbjct: 627 ERGIFPNVYTYNNIISCLSEGGKLKDATCLLDEMLQKGISPNIYTFRILIGAFFKACDFG 686
Query: 634 EAQDL 638
AQ+L
Sbjct: 687 AAQEL 691
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 66/252 (26%), Positives = 109/252 (43%), Gaps = 17/252 (6%)
Query: 399 FRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGF---IASSNMKSKIAFRLSS 455
R +G + N+V+ +L G+ E K+++ M E G I + N +IA L
Sbjct: 214 MRSSGALPNRVAYNTVISSLCGEGQTVEAEKLVEKMREVGLSPDIVTFN--CRIA-ALCK 270
Query: 456 AGKKDEANEFMDHM---EASGSDVGDKMWVSL-IKGHCVAGDLDKAADCFQKMVEKEGTS 511
+G+ EA+ M E G + + +L ++G C G ++A F M E S
Sbjct: 271 SGQILEASRIFRDMQIDEEMGLPKPNTVTYNLMLEGFCSEGMFEEARAIFDSMKNSETLS 330
Query: 512 HAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALS 571
Y I +L + ++A + N + E ++KP +Y L+ L F DA S
Sbjct: 331 LRSYNIWML--GLVRSGKLLEA-HLILNEMAEKNIKPNLYSYNILVHGLCKYGMFSDARS 387
Query: 572 LLCLMKDHGFPP---FVDPFIKYVSKSGTSDDAIAFLKGMTSKR-FPSMSVVLCLFAAFF 627
+L LM++ G P + + G +A L+ M FP+M L + +
Sbjct: 388 ILGLMRESGVAPDTVTYSTLLHGYCRRGKILEANYVLREMIQVGCFPNMYTCNILLHSLW 447
Query: 628 QARRHSEAQDLL 639
+ R SEA+DLL
Sbjct: 448 KEGRASEAEDLL 459
>gi|359490016|ref|XP_002275236.2| PREDICTED: pentatricopeptide repeat-containing protein At3g18110,
chloroplastic-like [Vitis vinifera]
Length = 1442
Score = 63.2 bits (152), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 76/368 (20%), Positives = 155/368 (42%), Gaps = 18/368 (4%)
Query: 281 PKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCV 340
P+ A AEE G + D S + + G+ + ++ +R K ++ +
Sbjct: 727 PETAHYLIDQAEEKGLLFDDVSIHTGVIEAYGKLKLWQKAESLVGSLRQKCTMVDRKVWN 786
Query: 341 KVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFR 400
++ ++ + A ++ M P+V+ L++ ++V +LD L+ V++ +
Sbjct: 787 ALIHAYAASGCYERARAIFNTMMRDGPSPTVDSVNGLMQALIVDGRLD-ELYV-VIQELQ 844
Query: 401 ENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKD 460
+ G ++ + + +L A G + E KI + M+ G+ + ++ +I L + GK+
Sbjct: 845 DMGFKISKSSITLMLDAFAHAGNIFEVKKIYQGMKAAGYFPTMHL-YRIMIGLLAKGKRV 903
Query: 461 EANEFM-DHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDL 519
E M ME + +W S++K + GD K +Q ++++ G +
Sbjct: 904 RDVEAMVSEMEVARFKPDLSIWNSVLKLYTGIGDFKKTGQVYQ-LIQEAGLKPDEDTYNT 962
Query: 520 LVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELI----KNLLVQRG---FKDALSL 572
L+ YC R + +H +R L+P TY+ LI K +V++ F+ LS
Sbjct: 963 LILMYCRDRRPEEGLSLMHE-MRRVGLEPKLDTYKSLISAFGKLQMVEQAEELFEGLLSK 1021
Query: 573 LCLMKDHGFPPFVDPFIKYVSKSGTSDDAIAFLKGMTSKRF-PSMSVVLCLFAAFFQARR 631
C + F +K SG A L M P+++ + L ++ + +
Sbjct: 1022 ECKLDR----SFYHIMMKMFRNSGNHSKAEKLLGVMKEAGVEPTIATMHLLMVSYSGSGQ 1077
Query: 632 HSEAQDLL 639
EA+ +L
Sbjct: 1078 PEEAEKVL 1085
Score = 56.2 bits (134), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 77/374 (20%), Positives = 163/374 (43%), Gaps = 62/374 (16%)
Query: 145 DEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRNK 204
+ AR FN ++ ++ + + N +++ + V G + E + ++ ++ G+ ++
Sbjct: 799 ERARAIFNTMM-RDGPSPTVDSVNGLMQALIVDGRLDELYVVIQELQDMGFKISKSSITL 857
Query: 205 MTEKFEKEGLESDLEKL------KGIFATGSIDNSIEKVASRICKVVRSDIWGDDVERQL 258
M + F G +++K+ G F T + + + ++ K VR DVE +
Sbjct: 858 MLDAFAHAGNIFEVKKIYQGMKAAGYFPTMHLYRIMIGLLAK-GKRVR------DVEAMV 910
Query: 259 RDLNVT-FSNDL-----VKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLG 312
++ V F DL V + +GD K ++ + +E+G +K DE +YN + +
Sbjct: 911 SEMEVARFKPDLSIWNSVLKLYTGIGDFKKTGQVY-QLIQEAG-LKPDEDTYNTLILMYC 968
Query: 313 REDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVN 372
R+ + ++ EMR G E +++T ++ F + MV++A +L+E + S
Sbjct: 969 RDRRPEEGLSLMHEMRRVGLEPKLDTYKSLISAFGKLQMVEQAEELFEGLL------SKE 1022
Query: 373 CCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILK 432
C +LD + ++++FR +GN + K+L
Sbjct: 1023 C------------KLDRSFYHIMMKMFRNSGN-------------------HSKAEKLLG 1051
Query: 433 AMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAG 492
M+E G + + S +G+ +EA + +D+++ G + + S+I + G
Sbjct: 1052 VMKEAGVEPTIATMHLLMVSYSGSGQPEEAEKVLDNLKVEGLPLSTLPYSSVIDAYLKNG 1111
Query: 493 DLDKAADCFQKMVE 506
D + A QK++E
Sbjct: 1112 DHNVA---IQKLME 1122
Score = 47.4 bits (111), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 89/455 (19%), Positives = 164/455 (36%), Gaps = 82/455 (18%)
Query: 269 LVKFVVDKLGDEPKKAL---IFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLD 325
++ ++ LG ++AL IF R SG + YNAM V R + ++LD
Sbjct: 190 MLATILSVLGKANQEALAVEIFARAEAASG---NTVQVYNAMMGVYARTGRFTKVQELLD 246
Query: 326 EMRSKGYE------------------MEMETCVKVLGRFSERNMVKEAVDLYEFAMACKN 367
MRS+G E M +++L + + + AC
Sbjct: 247 LMRSRGCEPDLVSFNTLINARLKSGTMVTNLAIELLNEVRRSGIQPDIITYNTLISACSR 306
Query: 368 KPSVNCCTFLLRKIVVSK-QLDMRLFSKVVRVF------RENGNVLTD----------AM 410
+ ++ + +V + Q D+ ++ ++ V+ RE G + D
Sbjct: 307 ESNLEEAVKVYNDMVAHRCQPDLWTYNAMISVYGRCGMSREAGRLFKDLESKGFLPDAVT 366
Query: 411 LNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHME 470
NS+L A G + + +I + M + GF + I G+ D A + M+
Sbjct: 367 YNSLLYAFAREGNVDKVKEICEDMVKMGFGKDEMTYNTIIHMYGKRGQHDLAFQLYSDMK 426
Query: 471 ASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRA 530
SG + LI A + +AA+ +M+ L+ Y +
Sbjct: 427 LSGRSPDAVTYTVLIDSLGKANMIKEAAEVMSEMLNAR-VKPTLRTFSALICGYAKAGKR 485
Query: 531 IDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPP---FVDP 587
++A + +C+ +KP H Y ++ LL A+ L M H F P +
Sbjct: 486 VEA-EETFDCMLRSGIKPDHLAYSVMLDILLRFNESGKAMKLYQEMVLHSFKPDHALYEV 544
Query: 588 FIKYVSKSGTSDDAIAFLK------GMTSKRFPSMSV----------------------- 618
++ + K +D +K GM S+ S+ V
Sbjct: 545 MLRVLGKENREEDVHKVVKDMEELCGMNSQVICSILVKGECFDHAANMLRLAISQGCELD 604
Query: 619 ---VLCLFAAFFQARRHSEAQDLLSKCPRYVRNHA 650
+L + ++ + RH EA++LL ++R H+
Sbjct: 605 RENLLSILGSYGSSGRHLEARELLD----FLREHS 635
Score = 39.7 bits (91), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 62/342 (18%), Positives = 137/342 (40%), Gaps = 10/342 (2%)
Query: 303 SYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFA 362
S N + L + +D + V+ E++ G+++ + +L F+ + E +Y+
Sbjct: 819 SVNGLMQALIVDGRLDELYVVIQELQDMGFKISKSSITLMLDAFAHAGNIFEVKKIYQGM 878
Query: 363 MACKNKPSVNCCTFLLRKIVVSKQL-DMRLFSKVVRVFRENGNVLTDAMLNSVLKALISV 421
A P+++ ++ + K++ D+ + V R ++ ++ NSVLK +
Sbjct: 879 KAAGYFPTMHLYRIMIGLLAKGKRVRDVEAMVSEMEVARFKPDL---SIWNSVLKLYTGI 935
Query: 422 GRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMW 481
G + ++ + ++E G + + + + +E M M G + +
Sbjct: 936 GDFKKTGQVYQLIQEAGLKPDEDTYNTLILMYCRDRRPEEGLSLMHEMRRVGLEPKLDTY 995
Query: 482 VSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCV 541
SLI +++A + F+ ++ KE + +++ + + A K + +
Sbjct: 996 KSLISAFGKLQMVEQAEELFEGLLSKECKLDRSF-YHIMMKMFRNSGNHSKAEKLL-GVM 1053
Query: 542 REYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPFIKYVS---KSGTS 598
+E ++P T L+ + ++A +L +K G P P+ + K+G
Sbjct: 1054 KEAGVEPTIATMHLLMVSYSGSGQPEEAEKVLDNLKVEGLPLSTLPYSSVIDAYLKNGDH 1113
Query: 599 DDAIAFLKGMTSKRF-PSMSVVLCLFAAFFQARRHSEAQDLL 639
+ AI L M P + C A ++ SEA LL
Sbjct: 1114 NVAIQKLMEMKKDGLEPDHRIWTCFVRAASLSQHTSEAIVLL 1155
>gi|255660838|gb|ACU25588.1| pentatricopeptide repeat-containing protein [Neosparton
ephedroides]
Length = 418
Score = 63.2 bits (152), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 64/292 (21%), Positives = 117/292 (40%), Gaps = 5/292 (1%)
Query: 266 SNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLD 325
+ +L++ VV + G + A +F E G + D ++ + + + +
Sbjct: 32 AKNLIQIVVSRKGKDSASA-VFEAILEAKGAQRSDVYVFSGLITAYLESGFLHDALECFR 90
Query: 326 EMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSK 385
R + + +TC KVL F + K Y+ + C S+ L+ + K
Sbjct: 91 LTREHKFWVPFDTCRKVLEHFMKLKYFKSVWGFYKEILECGYPASLYFFNILMHRFC--K 148
Query: 386 QLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNM 445
+ +MRL V + G + N+++ I +G + E ++ AM G
Sbjct: 149 EGEMRLAQSVFDEITKWGLRPSVVSFNTLMNGYIRLGDLDEGFRLKSAMHGSGIQPDVYT 208
Query: 446 KSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMV 505
S + L K ++ANE D M +G + +LI GHC G +D A + +++M+
Sbjct: 209 YSVLINGLCKESKMNDANELFDEMIGNGLVPNGVTFTTLIDGHCKTGSIDLAMEAYKEML 268
Query: 506 EKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELI 557
++G S + L+ C + A + + LKP TY LI
Sbjct: 269 -RQGFSPDLITYNTLIYGLCKEGDLKQAQDLIDEMSMK-GLKPDKITYTTLI 318
Score = 45.8 bits (107), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 43/184 (23%), Positives = 72/184 (39%), Gaps = 2/184 (1%)
Query: 402 NGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDE 461
NG V +++ G + + K M GF + + + L G +
Sbjct: 235 NGLVPNGVTFTTLIDGHCKTGSIDLAMEAYKEMLRQGFSPDLITYNTLIYGLCKEGDLKQ 294
Query: 462 ANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLV 521
A + +D M G + +LI G C GDL+ A ++M+ KE A L+
Sbjct: 295 AQDLIDEMSMKGLKPDKITYTTLIDGSCKEGDLETAFKYKKRMI-KENIRLDDVAYTALI 353
Query: 522 NTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGF 581
+ C + +++ A K + + LKP + TY +I + K LL M+ G
Sbjct: 354 SGLCREGQSVGAEKMLREML-SVGLKPDNGTYTMIINEFCKKGDVKMGSKLLKEMQRDGH 412
Query: 582 PPFV 585
P V
Sbjct: 413 VPCV 416
>gi|242071495|ref|XP_002451024.1| hypothetical protein SORBIDRAFT_05g022840 [Sorghum bicolor]
gi|241936867|gb|EES10012.1| hypothetical protein SORBIDRAFT_05g022840 [Sorghum bicolor]
Length = 813
Score = 63.2 bits (152), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 72/322 (22%), Positives = 129/322 (40%), Gaps = 14/322 (4%)
Query: 322 KVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKI 381
+V +M S+G ++ T ++ + +K+A D+++ +MA K + + KI
Sbjct: 307 RVSKKMTSQGILPDVVTLNSLMASLCKHGKIKDARDVFD-SMAMKGQKT----DIFSYKI 361
Query: 382 VVSKQLDMRLFSKVVRVFR---ENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGG 438
+++ + +F +G + N ++KA G + I M E G
Sbjct: 362 MLNGYATKGCLVDLTELFNLMLSDGIAPDSHIFNVLIKAYAKCGMLDRATIIFNEMREQG 421
Query: 439 FIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAA 498
S + L GK D+A E + M G + LI+G C GDL KA
Sbjct: 422 VEPDVVTYSTVIAALCRIGKMDDAVEKFNQMIDQGVAPSISTYHFLIQGFCTHGDLLKAK 481
Query: 499 DCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIK 558
D +M+ K G + ++N C R +DA + + + L P Y L+
Sbjct: 482 DLVLQMMNKGMRPDIG-CFNFIINNLCKLGRVMDA-QNIFDFTISIGLHPNVMVYNTLMD 539
Query: 559 NLLVQRGFKDALSLLCLMKDHGFPPFVDPFIKYVS---KSGTSDDAIAFLKGMTSKRF-P 614
+ ++AL + +M G P V + V+ K G D+ ++ + + K P
Sbjct: 540 GYCLVGKMENALRVFDVMVSAGIQPNVVVYGTLVNGYCKVGRIDEGLSLFREILHKGIKP 599
Query: 615 SMSVVLCLFAAFFQARRHSEAQ 636
S ++ + FQA R A+
Sbjct: 600 STTLYNIILHGLFQAGRTVPAK 621
Score = 47.8 bits (112), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 62/355 (17%), Positives = 138/355 (38%), Gaps = 49/355 (13%)
Query: 297 VKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAV 356
+ D +N + + +DR + +EMR +G E ++ T V+ + +AV
Sbjct: 387 IAPDSHIFNVLIKAYAKCGMLDRATIIFNEMREQGVEPDVVTYSTVIAALCRIGKMDDAV 446
Query: 357 DLYEFAMACKNKPSVNCCTFLLR------KIVVSKQLDMRLFSKVVRVFRENGNVLTDAM 410
+ + + PS++ FL++ ++ +K L +++ +K +R
Sbjct: 447 EKFNQMIDQGVAPSISTYHFLIQGFCTHGDLLKAKDLVLQMMNKGMRP--------DIGC 498
Query: 411 LNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHME 470
N ++ L +GR+ + I G + + + + GK + A D M
Sbjct: 499 FNFIINNLCKLGRVMDAQNIFDFTISIGLHPNVMVYNTLMDGYCLVGKMENALRVFDVMV 558
Query: 471 ASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRA 530
++G ++ +L+ G+C G +D+ F++++ K G + +++++ R
Sbjct: 559 SAGIQPNVVVYGTLVNGYCKVGRIDEGLSLFREILHK-GIKPSTTLYNIILHGLFQAGRT 617
Query: 531 IDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPFIK 590
+ P + E+ ++ + + ++ L L K+
Sbjct: 618 V----------------PAKVKFHEMTESGIAMDRYTYSIVLGGLFKN------------ 649
Query: 591 YVSKSGTSDDAIAFLKGMTSKRFP-SMSVVLCLFAAFFQARRHSEAQDLLSKCPR 644
SD+AI K + + ++ + + A FQ RR EA+DL + R
Sbjct: 650 -----SCSDEAILLFKELHAMNVKIDITTLNIMIAGMFQIRRVEEAKDLFASISR 699
Score = 40.8 bits (94), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 49/201 (24%), Positives = 82/201 (40%), Gaps = 38/201 (18%)
Query: 414 VLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASG 473
VLK+L S + G+ +++L+ M EGG + N +A+
Sbjct: 185 VLKSLCSDRKSGQADELLRMMAEGGAVCLPN---AVAYN--------------------- 220
Query: 474 SDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDA 533
++I G GD++KA D F +MV++ G S + +VN C K RA+D
Sbjct: 221 ---------TVIDGFFKEGDVNKACDLFNEMVQR-GISPDLSTYNCVVNALC-KARAMDK 269
Query: 534 CKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFV---DPFIK 590
+ + + + + P + TY LI +K+A+ + M G P V + +
Sbjct: 270 AEAILRQMVDKGVLPDNWTYNSLIYGYSSTGQWKEAVRVSKKMTSQGILPDVVTLNSLMA 329
Query: 591 YVSKSGTSDDAIAFLKGMTSK 611
+ K G DA M K
Sbjct: 330 SLCKHGKIKDARDVFDSMAMK 350
>gi|125580078|gb|EAZ21224.1| hypothetical protein OsJ_36877 [Oryza sativa Japonica Group]
Length = 726
Score = 63.2 bits (152), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 94/457 (20%), Positives = 179/457 (39%), Gaps = 48/457 (10%)
Query: 231 DNSIEKVASRI----CKVVR-SDIWGDDVERQLRDLNVTFSNDLVKFVV--DKLGDEPKK 283
D+ E+ SR+ C+++ + W +E QLR L S V+ V+ GD ++
Sbjct: 51 DDLAEESRSRLVRDTCRLLELRESWSPKLEAQLRQLLRVLSPPQVRAVLRAQARGD-VRR 109
Query: 284 ALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVL 343
A FFRWA+ +H ++ M S+L D +V+ M +G E +++
Sbjct: 110 AFEFFRWADRQWRYRHAPEVFDEMLSLLSNTRLHDPARRVVRLMIRRGVRRGTEQFAQLM 169
Query: 344 GRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRL-FSKVVRVFREN 402
+S ++ A+ + P ++ C + +VV+ ++D L F++ +R
Sbjct: 170 LSYSRAGKLRSAMRVLHLMQKDGCAPDISICNMAVNVLVVAGRVDKALEFAERMRRVGVE 229
Query: 403 GNVLT---------------DAM-----------------LNSVLKALISVGRMGECNKI 430
+V T DAM +V+ L R+ E +
Sbjct: 230 PDVYTYNCLIKGLCGARRVVDAMEMIGVMLQNGCPPDKISYYTVMSFLCKEKRVEEVRGL 289
Query: 431 LKAME-EGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHC 489
L+ M + G + + L+ G DEA EF+ E V + + +++ C
Sbjct: 290 LQRMRNDAGLFPDQVTYNVLIHGLAKHGHADEALEFLRESEGKRFRVDEVGYSAIVHSFC 349
Query: 490 VAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPW 549
+ G + +A + +M+ K G +V+ +C A K + + + D KP
Sbjct: 350 LNGRMAEAKEIVGEMISK-GCQPDVVTYSTVVDGFCRIGELDQARKMMKHMYKN-DCKPN 407
Query: 550 HTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPP---FVDPFIKYVSKSGTSDDAIAFLK 606
T+ L+ L +A LL ++ + P + + G ++ +
Sbjct: 408 TVTHTALLNGLCKVGKTSEAWELLNKSEEEWWTPSDITYSVVMHGFRREGKLKESCDVVV 467
Query: 607 GMTSKR-FPSMSVVLCLFAAFFQARRHSEAQDLLSKC 642
M K FP+ + L A + R+ +EA+D + +C
Sbjct: 468 QMLQKGFFPTTVEINLLIHALCKDRKPAEAKDFMEQC 504
>gi|15240032|ref|NP_196258.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75171850|sp|Q9FNG8.1|PP366_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At5g06400, mitochondrial; Flags: Precursor
gi|9758420|dbj|BAB08962.1| unnamed protein product [Arabidopsis thaliana]
gi|332003627|gb|AED91010.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 1030
Score = 63.2 bits (152), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 77/356 (21%), Positives = 136/356 (38%), Gaps = 48/356 (13%)
Query: 237 VASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGF 296
V I VVR D +E +L L+ F ++V+ V+ + P A+ FF W ++
Sbjct: 125 VVHEITSVVRGDDVLVSMEDRLEKLSFRFEPEIVENVLKRCFKVPHLAMRFFNWVKQKDG 184
Query: 297 VKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAV 356
H YN M S+ G +D +++ EM G + ++ T ++ + + + + +
Sbjct: 185 FSHRVGIYNTMLSIAGEARNLDMVDELVSEMEKNGCDKDIRTWTILISVYGKAKKIGKGL 244
Query: 357 DLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLK 416
++E R++G L N +++
Sbjct: 245 LVFE-------------------------------------KMRKSGFELDATAYNIMIR 267
Query: 417 ALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHM----EAS 472
+L GR + K M E G + ++ + K D D M E S
Sbjct: 268 SLCIAGRGDLALEFYKEMMEKGITFGLRTYKMLLDCIAKSEKVDVVQSIADDMVRICEIS 327
Query: 473 GSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAID 532
D + L+K CV+G + +A + +++ KE A Y ++LV C NR +D
Sbjct: 328 EHDA----FGYLLKSFCVSGKIKEALELIRELKNKEMCLDAKY-FEILVKGLCRANRMVD 382
Query: 533 ACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPF 588
A + V + ++ L Y +I L Q AL ++K G PP V +
Sbjct: 383 ALEIV-DIMKRRKLDD-SNVYGIIISGYLRQNDVSKALEQFEVIKKSGRPPRVSTY 436
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 91/411 (22%), Positives = 162/411 (39%), Gaps = 19/411 (4%)
Query: 241 ICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHD 300
IC+V+ S + + L V F+ +LV V+ + L FF W + KH+
Sbjct: 618 ICRVLSSSRDWERTQEALEKSTVQFTPELVVEVLRHAKIQGNAVLRFFSWVGKRNGYKHN 677
Query: 301 ESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYE 360
+YN V G + + EMR +G + +T ++ ++ + A+ ++
Sbjct: 678 SEAYNMSIKVAGCGKDFKQMRSLFYEMRRQGCLITQDTWAIMIMQYGRTGLTNIAIRTFK 737
Query: 361 FAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRE---NGNVLTDAMLNSVLKA 417
PS + L+ + K R + R FRE +G V ++ L
Sbjct: 738 EMKDMGLIPSSSTFKCLITVLCEKKG---RNVEEATRTFREMIRSGFVPDRELVQDYLGC 794
Query: 418 LISVGRMGECNKILKAMEEGGFIASSNMKSKIAFR-LSSAGKKDEANEFMDHMEASGSDV 476
L VG + L ++ + GF + + I R L GK +EA + E S +
Sbjct: 795 LCEVGNTKDAKSCLDSLGKIGFPVT--VAYSIYIRALCRIGKLEEALSELASFEGERSLL 852
Query: 477 GDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKF 536
+ S++ G GDL KA D M KE + G + + Y K + ++ K
Sbjct: 853 DQYTYGSIVHGLLQRGDLQKALDKVNSM--KEIGTKPGVHVYTSLIVYFFKEKQLE--KV 908
Query: 537 VHNC--VREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPFIKYVS- 593
+ C + +P TY +I + ++A + M++ G P + K+++
Sbjct: 909 LETCQKMEGESCEPSVVTYTAMICGYMSLGKVEEAWNAFRNMEERGTSPDFKTYSKFINC 968
Query: 594 --KSGTSDDAIAFLKGMTSKRF-PSMSVVLCLFAAFFQARRHSEAQDLLSK 641
++ S+DA+ L M K PS +F + +H A+ L K
Sbjct: 969 LCQACKSEDALKLLSEMLDKGIAPSTINFRTVFYGLNREGKHDLARIALQK 1019
Score = 46.6 bits (109), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 88/413 (21%), Positives = 156/413 (37%), Gaps = 79/413 (19%)
Query: 128 FTHEMVLKVLKNLESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLV 187
F E+V VLK P A RFFNWV +K+ YN ML I G + LV
Sbjct: 153 FEPEIVENVLKRCFKVPHLAMRFFNWVKQKDGFSHRVGIYNTMLSIAGEARNLDMVDELV 212
Query: 188 DVMKKKG--------------YGVASHVRNKMT--EKFEKEGLESDLEKLKGIFATGSID 231
M+K G YG A + + EK K G E D + +
Sbjct: 213 SEMEKNGCDKDIRTWTILISVYGKAKKIGKGLLVFEKMRKSGFELDATAYNIMIRS---- 268
Query: 232 NSIEKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALI----- 286
+C R D+ + +++ + +TF K ++D + K ++
Sbjct: 269 ---------LCIAGRGDL-ALEFYKEMMEKGITFGLRTYKMLLDCIAKSEKVDVVQSIAD 318
Query: 287 -FFRWAEESGFVKHDESSY---------------NAMASVLGREDCID-RFWKVLDEMRS 329
R E S +HD Y + + +E C+D +++++L +
Sbjct: 319 DMVRICEIS---EHDAFGYLLKSFCVSGKIKEALELIRELKNKEMCLDAKYFEILVKGLC 375
Query: 330 KGYEM----EMETCVK------------VLGRFSERNMVKEAVDLYEFAMACKNKPSVNC 373
+ M E+ +K ++ + +N V +A++ +E P V+
Sbjct: 376 RANRMVDALEIVDIMKRRKLDDSNVYGIIISGYLRQNDVSKALEQFEVIKKSGRPPRVST 435
Query: 374 CTFLLRKIVVSKQLD--MRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKIL 431
T +++ + KQ + LF++++ ENG + +V+ + R+ E K+
Sbjct: 436 YTEIMQHLFKLKQFEKGCNLFNEMI----ENGIEPDSVAITAVVAGHLGQNRVAEAWKVF 491
Query: 432 KAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKM--WV 482
+MEE G + S L + + DE + + M AS + D + WV
Sbjct: 492 SSMEEKGIKPTWKSYSIFVKELCRSSRYDEIIKIFNQMHASKIVIRDDIFSWV 544
Score = 45.4 bits (106), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 51/94 (54%)
Query: 121 LELSGVVFTHEMVLKVLKNLESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLV 180
LE S V FT E+V++VL++ + + RFF+WV ++ + +S+ YN+ +++ G
Sbjct: 635 LEKSTVQFTPELVVEVLRHAKIQGNAVLRFFSWVGKRNGYKHNSEAYNMSIKVAGCGKDF 694
Query: 181 QEFWGLVDVMKKKGYGVASHVRNKMTEKFEKEGL 214
++ L M+++G + M ++ + GL
Sbjct: 695 KQMRSLFYEMRRQGCLITQDTWAIMIMQYGRTGL 728
>gi|125562258|gb|EAZ07706.1| hypothetical protein OsI_29963 [Oryza sativa Indica Group]
Length = 465
Score = 63.2 bits (152), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 72/344 (20%), Positives = 125/344 (36%), Gaps = 6/344 (1%)
Query: 241 ICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGD-EPKKALIFFRWAEESGFVKH 299
+ VVR D + + +LR L F DL V+ EP A F W
Sbjct: 58 LSTVVRRDFYLERTLNRLR-LPSPFPPDLALRVIRAAAPAEPLHAARFLAWLRAKPSFAA 116
Query: 300 DESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLY 359
++A+ L R W + +MR+ G + T V+ + + + +AV+++
Sbjct: 117 SADHFDALLLPLARARLFTHLWSLAADMRALGLPLSPSTFSAVISSYGQSRLTDQAVEVF 176
Query: 360 EFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALI 419
+ LL + + K++R G A ++++ A
Sbjct: 177 NRLPRFGCPQTTQVYNALLDALCANGSFAGAY--KLLRRMARKGVAPDRATFSTLVDAWC 234
Query: 420 SVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDK 479
+ G++ E L M E GF + + L AG+ +EA F M G
Sbjct: 235 AAGKLREAQAFLDDMAERGFHPPVRGRDLLVDGLVRAGRLEEAKAFALRMTKEGVLPDVA 294
Query: 480 MWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHN 539
+ SL + C +GD++ A G +++ R +A + +
Sbjct: 295 TFNSLAEALCSSGDVEFAVALLAD-ASSRGLCPDISTYKVMIPAVAKAGRIDEAFRLFYA 353
Query: 540 CVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPP 583
+ E +P+ + Y +IK L F DA + MK G PP
Sbjct: 354 AL-EDGHRPFPSLYAAIIKALCKAGRFADAFAFFGDMKSKGHPP 396
>gi|125604075|gb|EAZ43400.1| hypothetical protein OsJ_28005 [Oryza sativa Japonica Group]
Length = 461
Score = 63.2 bits (152), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 72/344 (20%), Positives = 125/344 (36%), Gaps = 6/344 (1%)
Query: 241 ICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGD-EPKKALIFFRWAEESGFVKH 299
+ VVR D + + +LR L F DL V+ EP A F W
Sbjct: 54 LSTVVRRDFYLERTLNRLR-LPSPFPPDLALRVIRAAAPAEPLHAARFLAWLRAKPSFAA 112
Query: 300 DESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLY 359
++A+ L R W + +MR+ G + T V+ + + + +AV+++
Sbjct: 113 SADHFDALLLPLARARLFTHLWSLAADMRALGLPLSPSTFSAVISSYGQSRLTDQAVEVF 172
Query: 360 EFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALI 419
+ LL + + K++R G A ++++ A
Sbjct: 173 NRLPRFGCPQTTQVYNALLDALCANGSFAGAY--KLLRRMARKGVAPDRATFSTLVDAWC 230
Query: 420 SVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDK 479
+ G++ E L M E GF + + L AG+ +EA F M G
Sbjct: 231 AAGKLREAQAFLDDMAERGFHPPVRGRDLLVDGLVRAGRLEEAKAFALRMTKEGVLPDVA 290
Query: 480 MWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHN 539
+ SL + C +GD++ A G +++ R +A + +
Sbjct: 291 TFNSLAEALCSSGDVEFAVALLAD-ASSRGLCPDISTYKVMIPAVAKAGRIDEAFRLFYA 349
Query: 540 CVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPP 583
+ E +P+ + Y +IK L F DA + MK G PP
Sbjct: 350 AL-EDGHRPFPSLYAAIIKALCKAGRFADAFAFFGDMKSKGHPP 392
>gi|449454285|ref|XP_004144886.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g17140-like [Cucumis sativus]
gi|449472527|ref|XP_004153621.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g17140-like [Cucumis sativus]
Length = 875
Score = 63.2 bits (152), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 115/545 (21%), Positives = 208/545 (38%), Gaps = 80/545 (14%)
Query: 166 TYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRNKMTEKFEKEGLES-DLEKLKGI 224
T+NL++ + G ++ + D M +KG + + + GL S ++ L +
Sbjct: 155 TFNLLISALCEMGYLENAREVFDKMSEKGCKPNEFSLGILVRGYCRAGLHSHGIDLLDEM 214
Query: 225 FATGSIDNSI--EKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKF-----VVDKL 277
++G++ N + V S +C ++ + + + ++R+ V S D+V F + K
Sbjct: 215 RSSGALPNRVAYNTVISSLCGEGQT-VEAEKLVEKMRE--VGLSPDIVTFNCRIAALCKS 271
Query: 278 GDEPKKALIF--FRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEME 335
G + + IF + EE G K + +YN M E + + D M++
Sbjct: 272 GQILEASRIFRDMQIDEEMGLPKPNTVTYNLMLEGFCSEGMFEEARAIFDSMKNSETLSL 331
Query: 336 METCVKVLGRFSERNMVKEAVDLYEFAMACKN-KPSVNCCTFLLRKIVVSKQL-DMRLFS 393
+ +LG +++ + L E MA KN KP++ L+ + D R
Sbjct: 332 RSYNIWMLGLVRSGKLLEAHLILNE--MAEKNIKPNLYSYNILVHGLCKYGMFSDAR--- 386
Query: 394 KVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRL 453
++ + RE+G +++L G++ E N +L+ M + G + + + L
Sbjct: 387 SILGLMRESGVAPDTVTYSTLLHGYCRRGKILEANYVLREMIQVGCFPNMYTCNILLHSL 446
Query: 454 SSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHA 513
G+ EA + + M G + + ++I G C AG+LDKA + M + S
Sbjct: 447 WKEGRASEAEDLLQMMNERGYGLDNVTCNTMINGLCKAGNLDKAIEIVSGMWTRGSASLG 506
Query: 514 GYA---IDL-------------------LVNTYCSKNRAIDACK---------------- 535
IDL ++ C R +A K
Sbjct: 507 NLGNSFIDLFDIRNNGKKCLPDSITYATIIGGLCKVGRVDEAKKKLLEMIGKKLSPDSLI 566
Query: 536 ---FVHNCVREYDLKPWH---------------TTYEELIKNLLVQRGFKDALSLLCLMK 577
F++N ++ L TY LI+ L + + L+ MK
Sbjct: 567 FDTFIYNYCKQGKLSSAFRVLKEMEKKGCNKSLRTYNSLIQGLGSENQIFEIYGLMDEMK 626
Query: 578 DHGFPPFV---DPFIKYVSKSGTSDDAIAFLKGMTSKRF-PSMSVVLCLFAAFFQARRHS 633
+ G P V + I +S+ G DA L M K P++ L AFF+A
Sbjct: 627 ERGIFPNVYTYNNIISCLSEGGKLKDATCLLDEMLQKGISPNIYTFRILIGAFFKACDFG 686
Query: 634 EAQDL 638
AQ+L
Sbjct: 687 AAQEL 691
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 66/252 (26%), Positives = 109/252 (43%), Gaps = 17/252 (6%)
Query: 399 FRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGF---IASSNMKSKIAFRLSS 455
R +G + N+V+ +L G+ E K+++ M E G I + N +IA L
Sbjct: 214 MRSSGALPNRVAYNTVISSLCGEGQTVEAEKLVEKMREVGLSPDIVTFN--CRIA-ALCK 270
Query: 456 AGKKDEANEFMDHM---EASGSDVGDKMWVSL-IKGHCVAGDLDKAADCFQKMVEKEGTS 511
+G+ EA+ M E G + + +L ++G C G ++A F M E S
Sbjct: 271 SGQILEASRIFRDMQIDEEMGLPKPNTVTYNLMLEGFCSEGMFEEARAIFDSMKNSETLS 330
Query: 512 HAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALS 571
Y I +L + ++A + N + E ++KP +Y L+ L F DA S
Sbjct: 331 LRSYNIWML--GLVRSGKLLEA-HLILNEMAEKNIKPNLYSYNILVHGLCKYGMFSDARS 387
Query: 572 LLCLMKDHGFPP---FVDPFIKYVSKSGTSDDAIAFLKGMTSKR-FPSMSVVLCLFAAFF 627
+L LM++ G P + + G +A L+ M FP+M L + +
Sbjct: 388 ILGLMRESGVAPDTVTYSTLLHGYCRRGKILEANYVLREMIQVGCFPNMYTCNILLHSLW 447
Query: 628 QARRHSEAQDLL 639
+ R SEA+DLL
Sbjct: 448 KEGRASEAEDLL 459
>gi|413949109|gb|AFW81758.1| hypothetical protein ZEAMMB73_033635 [Zea mays]
Length = 691
Score = 63.2 bits (152), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 118/563 (20%), Positives = 205/563 (36%), Gaps = 93/563 (16%)
Query: 48 LPTSSHTFYSRFSRLP--ICYSRLINLIDPKNPNFRNPMICSYSSEPAMEQKESDFTVVS 105
LPT+S S F LP +C+ R + L+ P + +I SY+S P + +
Sbjct: 49 LPTASRLVAS-FPPLPLLVCFLRALRLLPSSPPRPFDSLIKSYASLPNRASLAAAALAFA 107
Query: 106 DIFYKFSDVNDISKQLELSGVVFTHEMVLKVLKNLESSPDEARRFFNWVLEKESERLSSK 165
V + VL L ++S ARRFF+ +L + +
Sbjct: 108 RSAGYVPSV-------------LAYNAVLLALS--DASLTSARRFFDSMLS-DGVAPNVY 151
Query: 166 TYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRNKMTEKFEKEGLESDLEKLKGIF 225
TYN+++R + G +E ++ M+ G G N + F F
Sbjct: 152 TYNILIRALCGRGHRKEALSILRDMRGAGCGPNVVTYNTLVAAF---------------F 196
Query: 226 ATGSIDNSIEKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKAL 285
G +D + ER LV ++D
Sbjct: 197 RAGEVDGA---------------------ER------------LVGMMLD---------- 213
Query: 286 IFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGR 345
G +K + ++N+M + + + ++ KV DEM +G + + ++G
Sbjct: 214 ---------GGLKPNLVTFNSMVNGMCKAGKMEDARKVFDEMMREGLAPDGVSYNTLVGG 264
Query: 346 FSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNV 405
+ + EA+ ++ P V T L+ V+ K ++ +VR RE G
Sbjct: 265 YCKAGCSHEALSVFAEMTQKGIMPDVVTFTSLIH--VMCKAGNLEWAVTLVRQMRERGLQ 322
Query: 406 LTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEF 465
+ + +++ G + + ++ M + S + + G+ DEA E
Sbjct: 323 MNEVTFTALIDGFCKKGFLDDALLAVRGMRQCRIKPSVVCYNALINGYCMVGRMDEAREL 382
Query: 466 MDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYC 525
+ MEA G + ++I +C D A + Q+M+EK G L+ C
Sbjct: 383 LHEMEAKGLKPDVVTYSTIISAYCKNCDTHSAFELNQQMLEK-GVLPDAITYSSLIRVLC 441
Query: 526 SKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFV 585
+ R DA N ++ L+P TY LI + + ALSL M G P V
Sbjct: 442 EEKRLSDAHVLFKNMIK-LGLQPDEFTYTSLIDGHCKEGNVERALSLHDKMVKAGVLPDV 500
Query: 586 DPF---IKYVSKSGTSDDAIAFL 605
+ I +SKS + +A L
Sbjct: 501 VTYSVLINGLSKSARAMEAQQLL 523
Score = 46.6 bits (109), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 57/249 (22%), Positives = 101/249 (40%), Gaps = 41/249 (16%)
Query: 395 VVRVFRENG---NVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAF 451
++R R G NV+T N+++ A G + +++ M +GG + + +
Sbjct: 172 ILRDMRGAGCGPNVVT---YNTLVAAFFRAGEVDGAERLVGMMLDGGLKPNLVTFNSMVN 228
Query: 452 RLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTS 511
+ AGK ++A + D M G + +L+ G+C AG +A F +M +K
Sbjct: 229 GMCKAGKMEDARKVFDEMMREGLAPDGVSYNTLVGGYCKAGCSHEALSVFAEMTQK---- 284
Query: 512 HAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALS 571
G D++ T +H + +L+ W T ++ +RG +
Sbjct: 285 --GIMPDVVTFT-----------SLIHVMCKAGNLE-WAVTLVRQMR----ERGLQ---- 322
Query: 572 LLCLMKDHGFPPFVDPFIKYVSKSGTSDDAIAFLKGMTSKRF-PSMSVVLCLFAAFFQAR 630
M + F +D F K G DDA+ ++GM R PS+ L +
Sbjct: 323 ----MNEVTFTALIDGF----CKKGFLDDALLAVRGMRQCRIKPSVVCYNALINGYCMVG 374
Query: 631 RHSEAQDLL 639
R EA++LL
Sbjct: 375 RMDEARELL 383
>gi|125558723|gb|EAZ04259.1| hypothetical protein OsI_26403 [Oryza sativa Indica Group]
Length = 528
Score = 63.2 bits (152), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 88/386 (22%), Positives = 148/386 (38%), Gaps = 50/386 (12%)
Query: 297 VKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAV 356
++ D ++ + S R D ++L ++ G ++ V EA
Sbjct: 84 LEPDAPLFSDLISAFARARLPDAALELLASAQAIGLTPRSNAVTALISSLGSARRVAEAE 143
Query: 357 DLY-EFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVL 415
L+ EF +A + KP LL+ V K ++ +V+ + G +A + ++
Sbjct: 144 ALFLEFFLAGEIKPRTRAYNALLKGYV--KIGSLKNAEQVLDEMSQCGVAPDEATYSLLV 201
Query: 416 KALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGS- 474
A GR +LK ME G SS + S+I G+ +A + M ASG
Sbjct: 202 DAYTRAGRWESARILLKEMEADGVKPSSYVFSRILAGFRDRGEWQKAFAVLREMHASGVR 261
Query: 475 -----------------------DVGDKM-----------WVSLIKGHCVAGDLDKAADC 500
D D+M W +LI HC G D+A +
Sbjct: 262 PDRHFYNVMIDTFGKYNCLGHAMDAFDRMREEGIEPDVVTWNTLIDAHCKGGRHDRAIEL 321
Query: 501 FQKMVEKE---GTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELI 557
F +M E GT+ I+LL + + + + + ++E L P TY L+
Sbjct: 322 FDEMRESNCPLGTTTYNIMINLL-----GEEQRWEGVEAMLAEMKEQGLVPNIITYTTLV 376
Query: 558 KNLLVQRGFKDALSLLCLMKDHGFPP---FVDPFIKYVSKSGTSDDAIAFLKGMTSKRFP 614
FK+A+ + MK G P + ++ G +D A+ +K M +
Sbjct: 377 DVYGRSGRFKEAVDCIEAMKADGLKPSSTMYHALVNAYAQRGLADHALNVVKAMRADGLE 436
Query: 615 SMSVVL-CLFAAFFQARRHSEAQDLL 639
+ +VVL L AF + RR +EA +L
Sbjct: 437 ASTVVLNSLINAFGEDRRIAEAFSVL 462
Score = 46.6 bits (109), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 61/304 (20%), Positives = 111/304 (36%), Gaps = 40/304 (13%)
Query: 280 EPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETC 339
E +KA R SG V+ D YN M G+ +C+ D MR +G E ++ T
Sbjct: 244 EWQKAFAVLREMHASG-VRPDRHFYNVMIDTFGKYNCLGHAMDAFDRMREEGIEPDVVTW 302
Query: 340 VKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVF 399
++ + A++L++
Sbjct: 303 NTLIDAHCKGGRHDRAIELFD-------------------------------------EM 325
Query: 400 RENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKK 459
RE+ L N ++ L R +L M+E G + + + + +G+
Sbjct: 326 RESNCPLGTTTYNIMINLLGEEQRWEGVEAMLAEMKEQGLVPNIITYTTLVDVYGRSGRF 385
Query: 460 DEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDL 519
EA + ++ M+A G M+ +L+ + G D A + + M +G + ++
Sbjct: 386 KEAVDCIEAMKADGLKPSSTMYHALVNAYAQRGLADHALNVVKAM-RADGLEASTVVLNS 444
Query: 520 LVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDH 579
L+N + R +A V ++E L+P TY L+K L+ F+ + M
Sbjct: 445 LINAFGEDRRIAEAFS-VLQFMKENGLRPDVITYTTLMKALIRVEQFEKVPVIYEEMITS 503
Query: 580 GFPP 583
G P
Sbjct: 504 GCAP 507
>gi|413950074|gb|AFW82723.1| hypothetical protein ZEAMMB73_503137 [Zea mays]
Length = 643
Score = 63.2 bits (152), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 66/284 (23%), Positives = 113/284 (39%), Gaps = 12/284 (4%)
Query: 302 SSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEF 361
+SYNA+ L RE + + V+ +M +G + + T ++ F + ++ A +
Sbjct: 225 ASYNAIVLALCREFRMQEVFSVVSDMVGRGLQPNVITYTTIVDAFCKAGELRMACAILAR 284
Query: 362 AMACKNKPSVNCCTFLLRKIV----VSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKA 417
+ P+V T L+R + V LDM R G + N +++
Sbjct: 285 MVITGCTPNVVTFTALVRGLFDDGRVHDALDMW------RWMVAEGWAPSTVSYNILIRG 338
Query: 418 LISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVG 477
L SVG + + IL +ME+ G + S + S AG A + M SG
Sbjct: 339 LCSVGDLKGASSILNSMEQHGCFPNVRTYSTLIDGFSKAGDLGGAISIWNDMSRSGCKPN 398
Query: 478 DKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFV 537
++ +++ C ++A KM+ E + L+ + C R A
Sbjct: 399 VVVYTNMVDVFCKKLMFNQAKSLIDKML-LENCPPNTVTFNTLIRSLCDCRRVGRALGVF 457
Query: 538 HNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGF 581
H +R + P TY ELI L + DAL ++ M+ HG
Sbjct: 458 HE-MRRHGCVPNGRTYNELIHGLFREGNCGDALHMVTEMQSHGI 500
Score = 49.7 bits (117), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 85/372 (22%), Positives = 144/372 (38%), Gaps = 36/372 (9%)
Query: 303 SYNAMASVLGREDCIDRFWKVLDEMRSKGY---EMEMETCVKVLGRFSERNMVKEAVDLY 359
+YN + L + + + K+LDEM KG ++ T V VL + + E +
Sbjct: 161 TYNLLVRALCQNNRVGAARKMLDEMARKGCPPDDVTYATIVSVLCKLDRLDEATEVLAAM 220
Query: 360 EFAMACKNKPSVNCC-TFLLRKI--VVSK------QLDMRLFSKVVRVFRENGN------ 404
A N + C F ++++ VVS Q ++ ++ +V F + G
Sbjct: 221 PPVAASYNAIVLALCREFRMQEVFSVVSDMVGRGLQPNVITYTTIVDAFCKAGELRMACA 280
Query: 405 -----VLTDAMLNSV-----LKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFR-L 453
V+T N V ++ L GR+ + + + M G+ A S + I R L
Sbjct: 281 ILARMVITGCTPNVVTFTALVRGLFDDGRVHDALDMWRWMVAEGW-APSTVSYNILIRGL 339
Query: 454 SSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHA 513
S G A+ ++ ME G + + +LI G AGDL A + M + G
Sbjct: 340 CSVGDLKGASSILNSMEQHGCFPNVRTYSTLIDGFSKAGDLGGAISIWNDM-SRSGCKPN 398
Query: 514 GYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLL 573
+V+ +C K A + + E + P T+ LI++L R AL +
Sbjct: 399 VVVYTNMVDVFCKKLMFNQAKSLIDKMLLE-NCPPNTVTFNTLIRSLCDCRRVGRALGVF 457
Query: 574 CLMKDHGFPP---FVDPFIKYVSKSGTSDDAIAFLKGMTSKRFP-SMSVVLCLFAAFFQA 629
M+ HG P + I + + G DA+ + M S S+ + + Q
Sbjct: 458 HEMRRHGCVPNGRTYNELIHGLFREGNCGDALHMVTEMQSHGIELSLVTYNTVVSGLCQT 517
Query: 630 RRHSEAQDLLSK 641
R EA + K
Sbjct: 518 RMSREAMVFVGK 529
>gi|147798083|emb|CAN67256.1| hypothetical protein VITISV_039434 [Vitis vinifera]
Length = 722
Score = 63.2 bits (152), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 79/327 (24%), Positives = 144/327 (44%), Gaps = 22/327 (6%)
Query: 300 DESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLY 359
D +YN + L ++ + ++++EM+ KG E + T ++ RF + ++EA ++
Sbjct: 388 DIFTYNTLILGLCKKGYLVSARELMNEMQIKGCEPNVITYTILIDRFCKEGRLEEARNVL 447
Query: 360 EFAMACK----NKPSVNC-CTFLLRKIVVSKQLDM--RLFSKVVRVFRENGNVLTDAMLN 412
+ M+ K N NC + L + V L+M + SK + ++ T N
Sbjct: 448 D-EMSGKGLALNAVGYNCLISALCKDEKVQDALNMFGDMSSKGCK-----PDIFT---FN 498
Query: 413 SVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEAS 472
S++ L V + E + + M G IA++ + + G EA + ++ M
Sbjct: 499 SLIFGLCKVNKFEEALGLYQDMLLEGVIANTITYNTLIHAFLRRGAMQEALKLVNDMLFR 558
Query: 473 GSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAID 532
G + D + LIK C AG+++K F+ M+ K G + + ++L+N C
Sbjct: 559 GCPLDDITYNGLIKALCRAGNIEKGLALFEDMMSK-GLNPNNISCNILINGLCRTGNIQH 617
Query: 533 ACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPP---FVDPFI 589
A +F+ + + L P TY LI L ++AL+L ++ G P + I
Sbjct: 618 ALEFLRDMIHR-GLTPDIVTYNSLINGLCKTGRAQEALNLFDKLQVEGICPDAITYNTLI 676
Query: 590 KYVSKSGTSDDAIAFL-KGMTSKRFPS 615
+ K G DDA L +G+ S P+
Sbjct: 677 SWHCKEGMFDDAHLLLSRGVDSGFIPN 703
Score = 44.3 bits (103), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 82/380 (21%), Positives = 150/380 (39%), Gaps = 15/380 (3%)
Query: 268 DLVKFVVDKLG--DEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLD 325
D+ ++DKLG E K ++ G V ES + + GR + ++L
Sbjct: 112 DVYYMLIDKLGAAGEFKTIDALLMQMKQEGIV-FRESLFILIMKHYGRAGLPGQATRLLL 170
Query: 326 EMRS-KGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVS 384
+MR E + VL N K +++ ++ P+V +++ + +
Sbjct: 171 DMRGVYSCEPTFRSYNVVLDVLLAGNCPKVVPNVFYEMLSKGISPTVYTFGVVMKALCLV 230
Query: 385 KQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSN 444
++D +++ +G V + +++ AL VGR+ E K+L+ M G I N
Sbjct: 231 NEVDSA--CALLKDMTRHGCVPNAIVYQTLIHALXKVGRVNEVLKLLEEMLLMGCIPDVN 288
Query: 445 MKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKM 504
+ L + EA + +D M G + L+ G C G +D+A +M
Sbjct: 289 TFNDAIHGLCKMLRIHEAAKLVDRMLLRGFTPNSFTYGVLMHGLCRMGKVDEA-----RM 343
Query: 505 VEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQR 564
+ + + + L+N Y S+ R +A +H + P TY LI L +
Sbjct: 344 LLNKVPNPNVVLFNTLINGYVSRGRLDEAKAVMHESMLSVGCGPDIFTYNTLILGLCKKG 403
Query: 565 GFKDALSLLCLMKDHGFPPFVDPF---IKYVSKSGTSDDAIAFLKGMTSKRFPSMSVVL- 620
A L+ M+ G P V + I K G ++A L M+ K +V
Sbjct: 404 YLVSARELMNEMQIKGCEPNVITYTILIDRFCKEGRLEEARNVLDEMSGKGLALNAVGYN 463
Query: 621 CLFAAFFQARRHSEAQDLLS 640
CL +A + + +A ++
Sbjct: 464 CLISALCKDEKVQDALNMFG 483
>gi|115458970|ref|NP_001053085.1| Os04g0477200 [Oryza sativa Japonica Group]
gi|113564656|dbj|BAF14999.1| Os04g0477200, partial [Oryza sativa Japonica Group]
Length = 528
Score = 63.2 bits (152), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 78/334 (23%), Positives = 146/334 (43%), Gaps = 14/334 (4%)
Query: 282 KKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCV- 340
+ AL R E G + ++ +Y + S + +D KV DEM +KG E++ E +
Sbjct: 162 QAALDIMREMRERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKG-EVKPEAVMY 220
Query: 341 -KVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVF 399
++G + ++ + A+ LY M + ++ T+ L +V + +D R V
Sbjct: 221 NALIGGYCDQGKLDTAL-LYRDRMVERGV-AMTVATYNL--LVHALFMDGRGTEAYELVE 276
Query: 400 RENGNVLTDAML--NSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAG 457
G L + N ++ G + + +I + M G A+ + + + LS G
Sbjct: 277 EMGGKGLAPDVFTYNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTALIYALSKKG 336
Query: 458 KKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAI 517
+ E ++ D G ++ +LI H +G++D+A + +M EK+ +
Sbjct: 337 QVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEM-EKKRIAPDDVTY 395
Query: 518 DLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMK 577
+ L+ C R +A K + + E ++P TY LI ++ KDAL + M
Sbjct: 396 NTLMRGLCLLGRVDEARKLIDE-MTERGIQPDLVTYNTLISGYSMKGDVKDALRIRNEMM 454
Query: 578 DHGFPPFV---DPFIKYVSKSGTSDDAIAFLKGM 608
+ GF P + + I+ + K+G DDA +K M
Sbjct: 455 NKGFNPTLLTYNALIQGLCKNGQGDDAENMVKEM 488
Score = 52.8 bits (125), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 120/562 (21%), Positives = 217/562 (38%), Gaps = 102/562 (18%)
Query: 43 TLSSLLPTSSHTFYSRFSRLPICYSRLINLIDPKNPNFRNPMICSYSSEPAMEQKESDFT 102
+L +LL T+S + L + YSR+ +L P + +P++ + S PA F
Sbjct: 49 SLPNLLLTASAAVRPHATSLRL-YSRMKSLSLPISTASLHPLLSALPSAPA-------FA 100
Query: 103 VVSDIFYKFSDVNDISKQLELSGVVFTHEMVLKVLKNLESSPDEARRFFNWVLEKESERL 162
+ +D+F +L L T ++L+ +L S+ AR L ++ R
Sbjct: 101 LFADMF-----------RLRLPLCTTTFNIMLR---HLCSAGKPARAL---ELLRQMPRP 143
Query: 163 SSKTYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRNKMTEKFEKEGLESDLEKLK 222
++ TYN ++ G VQ ++ M+++G G+A N+ T
Sbjct: 144 NAVTYNTVIAGFCSRGRVQAALDIMREMRERG-GIAP---NQYT---------------- 183
Query: 223 GIFATGSIDNSIEKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPK 282
+ T V S CKV R D + L V + ++ D+ K
Sbjct: 184 --YGT---------VISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCDQGK 232
Query: 283 --KALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCV 340
AL++ E G V ++YN + L + +++++EM KG ++ T
Sbjct: 233 LDTALLYRDRMVERG-VAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKGLAPDVFTYN 291
Query: 341 KVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDM--RLFSKVVRV 398
++ + VK+A++++E + +V T L+ + Q+ +LF + VR
Sbjct: 292 ILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTALIYALSKKGQVQETDKLFDEAVRR 351
Query: 399 FRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGK 458
VL +A++NS S++G
Sbjct: 352 GIRPDLVLYNALINS---------------------------------------HSTSGN 372
Query: 459 KDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAID 518
D A E M ME D + +L++G C+ G +D+A +M E+ G +
Sbjct: 373 IDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTER-GIQPDLVTYN 431
Query: 519 LLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKD 578
L++ Y K DA + + N + P TY LI+ L DA +++ M +
Sbjct: 432 TLISGYSMKGDVKDALR-IRNEMMNKGFNPTLLTYNALIQGLCKNGQGDDAENMVKEMVE 490
Query: 579 HGFPPFVDPFIKYVSKSGTSDD 600
+G P +I + T D+
Sbjct: 491 NGITPDDSTYISLIEGLTTEDE 512
>gi|357447159|ref|XP_003593855.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355482903|gb|AES64106.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 790
Score = 63.2 bits (152), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 77/351 (21%), Positives = 145/351 (41%), Gaps = 11/351 (3%)
Query: 237 VASRICKVV--RSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEES 294
+ +C+++ RS+ W E LR L + + LV V+ DE + AL FF WA+
Sbjct: 133 IVREVCRLISLRSN-WNPKFEENLRHLLRSLNPRLVCAVLRSQDDE-RIALDFFYWADRQ 190
Query: 295 GFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKE 354
+HD Y M +L + ++L M +G E E V+ +S M++
Sbjct: 191 WRYRHDAIVYYTMLDILSKTRLCQGARRILRLMTRRGIERSPEAFSYVMVSYSRAGMLRN 250
Query: 355 AVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRL-FSKVVRVFRENGNVLTDAMLNS 413
A+ + +P ++ C + +V +L+ L F + ++V ++++ N
Sbjct: 251 ALRILTLMQKAGVEPDLSICNTAIYVLVKGNKLEKALRFLERMKVAGIEPDIVS---YNC 307
Query: 414 VLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASG 473
++K V R+ + +++ M G + L K +E M++M +
Sbjct: 308 LIKGYCDVHRIDDALELIAEMPFKGCPPDKVSYYTVMAFLCKDRKVEEVKRLMENMVQNS 367
Query: 474 SDVGDKM-WVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAID 532
+ + D++ + +LI G D A F + E++G +V+++C KN+ ID
Sbjct: 368 NLIPDQVTYNTLIYALSKHGHADDAL-VFLREAEEKGFHIDKVGYSAVVDSFC-KNKNID 425
Query: 533 ACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPP 583
K + + P TY +I +A +L M HG P
Sbjct: 426 KAKSLVIDMYSKGCNPDVVTYTAIIDGFCRVGKIDEAKKMLQQMYKHGCKP 476
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 54/222 (24%), Positives = 96/222 (43%), Gaps = 5/222 (2%)
Query: 284 ALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVL 343
AL+F R AEE GF D+ Y+A+ + ID+ ++ +M SKG ++ T ++
Sbjct: 392 ALVFLREAEEKGF-HIDKVGYSAVVDSFCKNKNIDKAKSLVIDMYSKGCNPDVVTYTAII 450
Query: 344 GRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVS-KQLDMRLFSKVVRVFREN 402
F + EA + + KP+ T LL + + K L+ R +++ V E+
Sbjct: 451 DGFCRVGKIDEAKKMLQQMYKHGCKPNTVTYTVLLNGLCHNGKSLEAR---EMINVSEEH 507
Query: 403 GNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEA 462
++V+ L G++ E + + M E GF+ + + + L A
Sbjct: 508 WWTPNAITYSAVMHGLRREGKLSEACDLTREMIEKGFLPNPVDINLLIQSLCRNQNVVGA 567
Query: 463 NEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKM 504
++++ G V + S+I G C GDLD A + M
Sbjct: 568 KKYLEECLHKGCAVNVVNFTSVIYGFCQIGDLDAALSMLEDM 609
>gi|242069877|ref|XP_002450215.1| hypothetical protein SORBIDRAFT_05g002040 [Sorghum bicolor]
gi|241936058|gb|EES09203.1| hypothetical protein SORBIDRAFT_05g002040 [Sorghum bicolor]
Length = 862
Score = 63.2 bits (152), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 75/355 (21%), Positives = 141/355 (39%), Gaps = 12/355 (3%)
Query: 297 VKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAV 356
+K + + Y + I +LD M + G VL ++++ M+ EA+
Sbjct: 405 IKPNVTIYGILLHGYAARGAIADLTDLLDLMVANGISPNNYIFNIVLCAYAKKAMIDEAM 464
Query: 357 DLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRL--FSKVVRVFRENGNVLTDAMLNSV 414
++ P V L+ + ++D + F++++ +G + NS+
Sbjct: 465 HIFSRMSQHGLSPDVVTYGILIDALCKLGRVDDAVLKFNQMI----NDGVTPNSVVFNSL 520
Query: 415 LKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGS 474
+ L +V R + ++ M + G + + I L + G+ A +D ME G
Sbjct: 521 VYGLCTVDRWEKAEELFFEMWDQGVRPNVVFFNTIMCNLCNEGQVMVAQRLIDSMERVGV 580
Query: 475 DVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDAC 534
+ +LI GHC+AG D+AA MV G + D L+ YC R +A
Sbjct: 581 RPNVISYNTLIGGHCLAGRTDEAAQLLDVMVSV-GLKPDLISYDTLLRGYCKTGRIDNAY 639
Query: 535 KFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFV---DPFIKY 591
+R+ + P TY +++ L R F +A L M G + + +
Sbjct: 640 CLFREMLRK-GVTPGAVTYSTILQGLFHTRRFSEAKELYLNMIKSGQQWDIYTYNIILNG 698
Query: 592 VSKSGTSDDAIAFLKGMTSKRF-PSMSVVLCLFAAFFQARRHSEAQDLLSKCPRY 645
+ K+ D+A + + SK P++ + F+ R +A DL + P +
Sbjct: 699 LCKTNCVDEAFKIFQSLCSKDLRPNIITFTIMIDVLFKGGRKKDAMDLFASIPSH 753
Score = 59.3 bits (142), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 83/368 (22%), Positives = 148/368 (40%), Gaps = 23/368 (6%)
Query: 286 IFFRWAEE-SGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLG 344
+F R A S V+ D +Y+ + R I+ + + G+ + ++L
Sbjct: 74 LFNRMARACSNKVRPDLCTYSILTGCFCRLGRIEHGFAAFGLILKTGWRVNEVVINQLLN 133
Query: 345 RFSERNMVKEAVDLYEFAM---ACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRE 401
+ V EA+D+ M C P+V C LL+ + K+++ L +++ E
Sbjct: 134 GLCDAKRVDEAMDILLRRMPEFGCM--PNVVSCNTLLKGLCNEKRVEEAL--ELLHTMAE 189
Query: 402 NG------NVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSS 455
+G NV+T N+++ L + +L+ M + G S I L
Sbjct: 190 DGGGNCTPNVVT---YNTIIDGLCKAQAVDRAEGVLQHMIDKGVKLDVVTYSTIIDGLCK 246
Query: 456 AGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGY 515
A D A + HM G + ++I G C A +D+A Q M++K G
Sbjct: 247 AQAVDRAEGVLQHMIDKGVKPDVVTYNTIIDGLCKAQAVDRAEGVLQHMIDK-GVKPDVV 305
Query: 516 AIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCL 575
+ +++ C K +A+D V + + D+KP TY LI L +K+ + L
Sbjct: 306 TYNTIIDGLC-KAQAVDRADGVLQHMIDKDVKPDIQTYNCLIHGYLSTGEWKEVVRRLEE 364
Query: 576 MKDHGFPPFVDPF---IKYVSKSGTSDDAIAFLKGMTSKRF-PSMSVVLCLFAAFFQARR 631
M G P V + + Y+ K+G +A M K P++++ L +
Sbjct: 365 MYARGLDPDVVTYSLLLDYLCKNGKCTEARKIFYCMIRKGIKPNVTIYGILLHGYAARGA 424
Query: 632 HSEAQDLL 639
++ DLL
Sbjct: 425 IADLTDLL 432
Score = 45.4 bits (106), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 48/226 (21%), Positives = 91/226 (40%), Gaps = 38/226 (16%)
Query: 412 NSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEA 471
N+++ L + G++ +++ +ME G + + + AG+ DEA + +D M +
Sbjct: 553 NTIMCNLCNEGQVMVAQRLIDSMERVGVRPNVISYNTLIGGHCLAGRTDEAAQLLDVMVS 612
Query: 472 SGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAG----------------- 514
G + +L++G+C G +D A F++M+ K T A
Sbjct: 613 VGLKPDLISYDTLLRGYCKTGRIDNAYCLFREMLRKGVTPGAVTYSTILQGLFHTRRFSE 672
Query: 515 -----------------YAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELI 557
Y ++++N C N +A K + + DL+P T+ +I
Sbjct: 673 AKELYLNMIKSGQQWDIYTYNIILNGLCKTNCVDEAFKIFQSLCSK-DLRPNIITFTIMI 731
Query: 558 KNLLVQRGFKDALSLLCLMKDHGFPPFVDPF---IKYVSKSGTSDD 600
L KDA+ L + HG P V + +K + + G D+
Sbjct: 732 DVLFKGGRKKDAMDLFASIPSHGLVPNVVTYCIMMKNIIQEGLLDE 777
Score = 42.0 bits (97), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 66/354 (18%), Positives = 124/354 (35%), Gaps = 43/354 (12%)
Query: 234 IEKVASRICKVVRSDIWGDDVERQLRDL----NVTFSNDLVKFVVDKLGDEPKKALIFFR 289
I ++ + +C R D D + R++ + NV N L+K + ++ E L+
Sbjct: 128 INQLLNGLCDAKRVDEAMDILLRRMPEFGCMPNVVSCNTLLKGLCNEKRVEEALELLHTM 187
Query: 290 WAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSER 349
+ G + +YN + L + +DR VL M KG ++++ T ++ +
Sbjct: 188 AEDGGGNCTPNVVTYNTIIDGLCKAQAVDRAEGVLQHMIDKGVKLDVVTYSTIIDGLCKA 247
Query: 350 NMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDA 409
V A + + + KP V
Sbjct: 248 QAVDRAEGVLQHMIDKGVKPDV-------------------------------------V 270
Query: 410 MLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHM 469
N+++ L + +L+ M + G + I L A D A+ + HM
Sbjct: 271 TYNTIIDGLCKAQAVDRAEGVLQHMIDKGVKPDVVTYNTIIDGLCKAQAVDRADGVLQHM 330
Query: 470 EASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNR 529
+ + LI G+ G+ + ++M + G LL++ C +
Sbjct: 331 IDKDVKPDIQTYNCLIHGYLSTGEWKEVVRRLEEMYAR-GLDPDVVTYSLLLDYLCKNGK 389
Query: 530 AIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPP 583
+A K + +R+ +KP T Y L+ + D LL LM +G P
Sbjct: 390 CTEARKIFYCMIRK-GIKPNVTIYGILLHGYAARGAIADLTDLLDLMVANGISP 442
>gi|242046334|ref|XP_002461038.1| hypothetical protein SORBIDRAFT_02g039560 [Sorghum bicolor]
gi|241924415|gb|EER97559.1| hypothetical protein SORBIDRAFT_02g039560 [Sorghum bicolor]
Length = 595
Score = 63.2 bits (152), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 52/200 (26%), Positives = 90/200 (45%), Gaps = 5/200 (2%)
Query: 412 NSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEA 471
+V++ L + R GE +L++M+ G A + L A + D A E +D M
Sbjct: 127 TTVMRGLCASRRTGEAVALLRSMQASGVRADVVTYGTLIRGLCDASELDAALELLDEMCG 186
Query: 472 SGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAI 531
SG ++ L++G+C +G F+ M + G L++ C + +
Sbjct: 187 SGVQPNVVVYSCLLRGYCRSGRWQDVGKVFEDM-SRRGIKPDVIMFTGLIDDLCKEGKTG 245
Query: 532 DACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFV---DPF 588
A K V + + + L+P TY LI +L + ++AL+L M D G P V +
Sbjct: 246 KAAK-VKDMMVQRGLEPNVVTYNVLINSLCKEGSVREALTLRKEMDDKGVAPDVVTYNTL 304
Query: 589 IKYVSKSGTSDDAIAFLKGM 608
I +S D+A++FL+ M
Sbjct: 305 IAGLSGVLEMDEAMSFLEEM 324
Score = 43.5 bits (101), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 75/359 (20%), Positives = 137/359 (38%), Gaps = 53/359 (14%)
Query: 297 VKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAV 356
+K D + + L +E + KV D M +G E + T ++ + V+EA+
Sbjct: 224 IKPDVIMFTGLIDDLCKEGKTGKAAKVKDMMVQRGLEPNVVTYNVLINSLCKEGSVREAL 283
Query: 357 DLYEFAMACKNKPSVNCCTFLLRKIVVSKQLD--MRLFSKVVRVFRENGNVLTD---AML 411
L + P V L+ + ++D M ++++ G+ + +
Sbjct: 284 TLRKEMDDKGVAPDVVTYNTLIAGLSGVLEMDEAMSFLEEMIQ-----GDTVVEPDVVTF 338
Query: 412 NSVLKALISVGRMGECNKILKAMEE--------------GGFI------ASSNMKSKIAF 451
NSV+ L +GRM + K+ + M E GGF+ + N+ ++A
Sbjct: 339 NSVIHGLCKIGRMTQAVKVREMMAERGCMCNLVTYNYLIGGFLRVHKVKMAMNLMDELAI 398
Query: 452 R---------------LSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDK 496
S + D A +F+ M G ++ L+ C G +++
Sbjct: 399 SGLEPDSFTYSILINGFSKMWEVDRAEKFLCTMRQRGIKAELFHYIPLLAAMCQQGMMER 458
Query: 497 AADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEEL 556
A F +M + G Y+ +++ C + + + + E L P TY L
Sbjct: 459 AMGLFNEMDKNCGLDAIAYST--MIHGACKSGDMKTVKQLIQDMLDE-GLAPDAVTYSML 515
Query: 557 IKNLLVQRG-FKDALSLLCLMKDHGFPPFV---DPFIKYVSKSGTSDDAIAFLKGMTSK 611
I N+ + G ++A +L M GF P V D IK S G +D + + M +K
Sbjct: 516 I-NMYAKLGDLEEAERVLKQMTASGFVPDVAVFDSLIKGYSAEGQTDKVLKLIHEMRAK 573
>gi|225465635|ref|XP_002270253.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g08310, mitochondrial [Vitis vinifera]
gi|296085293|emb|CBI29025.3| unnamed protein product [Vitis vinifera]
Length = 854
Score = 62.8 bits (151), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 84/346 (24%), Positives = 144/346 (41%), Gaps = 58/346 (16%)
Query: 256 RQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVL--GR 313
++LR+ ++++V+ V+ L K A FF WA + G H+ +YNAMAS L R
Sbjct: 84 QELRNFGSMLTHEVVENVLSGL-KSWKIAYRFFNWASDQGGFNHNCYTYNAMASCLSHAR 142
Query: 314 EDCIDRFWKVLDEMRSK-----GYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNK 368
++ +D + S+ G C+ G E N++ + V + + N
Sbjct: 143 QNAPLSLLS-MDIVNSRCAMSPGALGFFIRCLGSTGLVEEANLLFDQVKMMRLCVP--NS 199
Query: 369 PSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECN 428
S NC LL I S +D L ++ ++G L SVL+A + + +
Sbjct: 200 YSFNC---LLEAISKSGSID--LVEMRLKEMCDSGWEPDKYTLTSVLQAYCNSRKFDKAL 254
Query: 429 KILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGH 488
+ + G++ ++ S + S G+ D+A E ++ ME G + +K + LI G
Sbjct: 255 SVFNEIYGRGWV-DGHVLSILVLTFSKCGEVDKAFELIERMEDLGIRLNEKTFCVLIHGF 313
Query: 489 CVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKP 548
+DKA F+KM +G+A D+
Sbjct: 314 VRQSRVDKALQLFKKM------QKSGFAPDV----------------------------- 338
Query: 549 WHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPFIKYVSK 594
+ Y+ LI L ++ + AL LL MK+ G +DP I+ +SK
Sbjct: 339 --SVYDALIGGLCAKKEIEKALHLLSEMKELG----IDPDIQILSK 378
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 148/688 (21%), Positives = 260/688 (37%), Gaps = 148/688 (21%)
Query: 42 HTLSSLLPTSSHTFYSRFSRLPICYSRLINLIDPKNPNFRNPMICSYSSEPAMEQKESDF 101
+T SL + TF S+F RL IC + P + N +I ++ +P
Sbjct: 30 YTQKSLFTQNLSTF-SQFLRL-ICTKSSASFSSPHGAHITNALISIFTKQP--------- 78
Query: 102 TVVSDIFYKFSDVNDISKQLELSGVVFTHEMVLKVLKNLESSPDEARRFFNWVLEKESER 161
N +++L G + THE+V VL L+S A RFFNW ++
Sbjct: 79 ------------FNPDNQELRNFGSMLTHEVVENVLSGLKSW-KIAYRFFNWASDQGGFN 125
Query: 162 LSSKTYNLM-----------------------------------LRIVGVHGLVQEFWGL 186
+ TYN M +R +G GLV+E L
Sbjct: 126 HNCYTYNAMASCLSHARQNAPLSLLSMDIVNSRCAMSPGALGFFIRCLGSTGLVEEANLL 185
Query: 187 VDVMKKKGYGVA-SHVRNKMTEKFEKEGLESDLE-KLKGIFATGSIDN--SIEKVASRIC 242
D +K V S+ N + E K G +E +LK + +G + ++ V C
Sbjct: 186 FDQVKMMRLCVPNSYSFNCLLEAISKSGSIDLVEMRLKEMCDSGWEPDKYTLTSVLQAYC 245
Query: 243 KVVRSD----IWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVK 298
+ D ++ + R D +V ++ K G E KA E+ G ++
Sbjct: 246 NSRKFDKALSVFNEIYGRGWVDGHVL---SILVLTFSKCG-EVDKAFELIERMEDLG-IR 300
Query: 299 HDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDL 358
+E ++ + R+ +D+ ++ +M+ G+ ++ ++G + +++A+ L
Sbjct: 301 LNEKTFCVLIHGFVRQSRVDKALQLFKKMQKSGFAPDVSVYDALIGGLCAKKEIEKALHL 360
Query: 359 YEFAMACKNKPSVNCCTFLLRKIVV--SKQLDMRLFSKVVRVFRENGNVL-TDAML---N 412
P + +L K++ S+++D + R+ E L T+AML N
Sbjct: 361 LSEMKELGIDPDIQ----ILSKLIAYCSEEVD------IYRLIEERLEDLDTEAMLLLYN 410
Query: 413 SVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEAS 472
SVL L++ + + +L+AM + + N E N+F E
Sbjct: 411 SVLNGLVNGKSVDKAYYLLRAMTGDNY--TDNF---------------EVNKFFMVKEMV 453
Query: 473 GSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAID 532
D + +I G C G LD A F+ MV + G + L++ + NR ++
Sbjct: 454 RPDTTS--FSIVIDGLCNTGKLDLALSLFRDMV-RVGCKQNVLLYNNLIDKLSNSNR-LE 509
Query: 533 AC---------------KFVHN------CVRE--------------YDLKPWHTTYEELI 557
C +F HN C RE + +PW Y L+
Sbjct: 510 ECYLLLKEMKGSGFRPTQFTHNSIFGCLCRREDVTGALDMVREMRVHGHEPWIKHYTLLV 569
Query: 558 KNLLVQRGFKDALSLLCLMKDHGFPPFVDPF---IKYVSKSGTSDDAIAFLKGMTSKRF- 613
K L ++ +A + L M GF P + + I K D A+ + + ++ +
Sbjct: 570 KQLCKRKRSAEACNFLAEMVREGFLPDIVAYSAAIDGFVKIKAVDQALEIFRDICARGYC 629
Query: 614 PSMSVVLCLFAAFFQARRHSEAQDLLSK 641
P + L F + +R SEA D+L +
Sbjct: 630 PDVVAYNTLINGFCKVKRVSEAHDILDE 657
Score = 55.8 bits (133), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 82/393 (20%), Positives = 146/393 (37%), Gaps = 50/393 (12%)
Query: 254 VERQLRDLNVTFSNDLVKFVVDKLGDEPKK--ALIFFRWAEESGFVKHDESSYNAMASVL 311
V+ +R +FS V+D L + K AL FR G K + YN + L
Sbjct: 449 VKEMVRPDTTSFS-----IVIDGLCNTGKLDLALSLFRDMVRVG-CKQNVLLYNNLIDKL 502
Query: 312 GREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSV 371
+ ++ + +L EM+ G+ T + G R V A+D+ ++P +
Sbjct: 503 SNSNRLEECYLLLKEMKGSGFRPTQFTHNSIFGCLCRREDVTGALDMVREMRVHGHEPWI 562
Query: 372 NCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKIL 431
T L++++ K+ + + + RE G + ++ + + + + + +I
Sbjct: 563 KHYTLLVKQLCKRKR-SAEACNFLAEMVRE-GFLPDIVAYSAAIDGFVKIKAVDQALEIF 620
Query: 432 KAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVA 491
+ + G+ + + + EA++ +D M A G + LI G C
Sbjct: 621 RDICARGYCPDVVAYNTLINGFCKVKRVSEAHDILDEMVAKGLVPSVVTYNLLIDGWCKN 680
Query: 492 GDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHT 551
GD+D+A C +MV KE RE P
Sbjct: 681 GDIDQAFHCLSRMVGKE---------------------------------RE----PNVI 703
Query: 552 TYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPFIKYV---SKSGTSDDAIAFLKGM 608
TY LI L DA+ L M+ G P FI + K G D A+ + + M
Sbjct: 704 TYTTLIDGLCNAGRPDDAIHLWNEMRGKGCSPNRISFIALIHGLCKCGWPDAALLYFREM 763
Query: 609 TSKRFPSMSVVLCLFAAFFQARRHSEAQDLLSK 641
+ P V + L +F + + A ++L +
Sbjct: 764 GERETPDTIVYVALITSFISNKNPTLAFEILKE 796
>gi|255539453|ref|XP_002510791.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223549906|gb|EEF51393.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 475
Score = 62.8 bits (151), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 71/355 (20%), Positives = 141/355 (39%), Gaps = 13/355 (3%)
Query: 238 ASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFV---------VDKLGDEPKKALIFF 288
A+R+ ++R D G D + L +L++ S LV+ V +D K FF
Sbjct: 82 AARVLDILRQDGPGFDAKAALSELDLRVSGLLVREVLAGILRNIGIDNKTRCAKLGYKFF 141
Query: 289 RWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSE 348
W+ + +H ++Y+ + + + W++LDEM G+ T ++
Sbjct: 142 IWSSQQENYRHTANNYHLIMKIFADCEEFKAMWRLLDEMVENGFPTTARTFNILICTCGG 201
Query: 349 RNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTD 408
+ ++ V+ + + +P + +L ++ ++ +L V + G
Sbjct: 202 AGLARKVVERFIKSKTFNYRPFKHSYNAILLSLLAIREY--KLIEWVHQQMLVEGYCPDT 259
Query: 409 AMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDH 468
N ++ A +G++ +++L M GF + + + L K A + ++H
Sbjct: 260 LTYNILMCAKYRLGKLHHFHRLLDEMGRSGFSPDFHTYNILLHVLGKGNKPIAALKLLNH 319
Query: 469 MEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKN 528
M+ G D + +LI G AG+LD F +M+ K G +++ Y
Sbjct: 320 MKEIGFDPSILHFTTLIDGLSRAGNLDACNYFFDEMI-KNGFVPDVVCYTVMITGYIVAG 378
Query: 529 RAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPP 583
A + + L P TY +I+ L + F++A +L M G P
Sbjct: 379 ELEKAREIFDEMIARGQL-PNVFTYNSMIRGLCMAGKFEEARCMLKEMGSRGCKP 432
Score = 43.9 bits (102), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 78/402 (19%), Positives = 151/402 (37%), Gaps = 50/402 (12%)
Query: 121 LELSGVVFTHEMVLKVLKNL-----ESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVG 175
L +SG++ E++ +L+N+ +FF W ++E+ R ++ Y+L+++I
Sbjct: 107 LRVSGLL-VREVLAGILRNIGIDNKTRCAKLGYKFFIWSSQQENYRHTANNYHLIMKIFA 165
Query: 176 VHGLVQEFWGLVDVMKKKGYGVASHVRNKMTEKFEKEGLESDLEKLKGIFATGSIDNSIE 235
+ W L+D M + G+ + N + GL
Sbjct: 166 DCEEFKAMWRLLDEMVENGFPTTARTFNILICTCGGAGLA-------------------R 206
Query: 236 KVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESG 295
KV R ++S + R +++ L+ + + E K W +
Sbjct: 207 KVVERF---IKSKTF------NYRPFKHSYNAILLSLLAIR---EYK----LIEWVHQQM 250
Query: 296 FVKH---DESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMV 352
V+ D +YN + R + F ++LDEM G+ + T +L + N
Sbjct: 251 LVEGYCPDTLTYNILMCAKYRLGKLHHFHRLLDEMGRSGFSPDFHTYNILLHVLGKGNKP 310
Query: 353 KEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDM--RLFSKVVRVFRENGNVLTDAM 410
A+ L PS+ T L+ + + LD F ++++ NG V
Sbjct: 311 IAALKLLNHMKEIGFDPSILHFTTLIDGLSRAGNLDACNYFFDEMIK----NGFVPDVVC 366
Query: 411 LNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHME 470
++ I G + + +I M G + + + + L AGK +EA + M
Sbjct: 367 YTVMITGYIVAGELEKAREIFDEMIARGQLPNVFTYNSMIRGLCMAGKFEEARCMLKEMG 426
Query: 471 ASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSH 512
+ G ++ +L+ AG L +A + ++M E H
Sbjct: 427 SRGCKPNFLVYNTLVNNLRNAGKLSEAREVIKEMAENGQYVH 468
>gi|77557056|gb|ABA99852.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
Length = 726
Score = 62.8 bits (151), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 94/457 (20%), Positives = 179/457 (39%), Gaps = 48/457 (10%)
Query: 231 DNSIEKVASRI----CKVVR-SDIWGDDVERQLRDLNVTFSNDLVKFVV--DKLGDEPKK 283
D+ E+ SR+ C+++ + W +E QLR L S V+ V+ GD ++
Sbjct: 51 DDLAEESRSRLVRDTCRLLELRESWSPKLEAQLRHLLRVLSPPQVRAVLRAQARGD-VRR 109
Query: 284 ALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVL 343
A FFRWA+ +H ++ M S+L D +V+ M +G E +++
Sbjct: 110 AFEFFRWADRQWRYRHAPEVFDEMLSLLSNTRLHDPARRVVRLMIRRGVRRGTEQFAQLM 169
Query: 344 GRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRL-FSKVVRVFREN 402
+S ++ A+ + P ++ C + +VV+ ++D L F++ +R
Sbjct: 170 LSYSRAGKLRSAMRVLHLMQKDGCAPDISICNMAVNVLVVAGRVDKALEFAERMRRVGVE 229
Query: 403 GNVLT---------------DAM-----------------LNSVLKALISVGRMGECNKI 430
+V T DAM +V+ L R+ E +
Sbjct: 230 PDVYTYNCLIKGLCGARRVVDAMEMIGVMLQNGCPPDKISYYTVMSFLCKEKRVEEVRGL 289
Query: 431 LKAME-EGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHC 489
L+ M + G + + L+ G DEA EF+ E V + + +++ C
Sbjct: 290 LQRMRNDAGLFPDQVTYNVLIHGLAKHGHADEALEFLRESEGKRFRVDEVGYSAIVHSFC 349
Query: 490 VAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPW 549
+ G + +A + +M+ K G +V+ +C A K + + + D KP
Sbjct: 350 LNGRMAEAKEIVGEMISK-GCQPDVVTYSTVVDGFCRIGELDQARKMMKHMYKN-DCKPN 407
Query: 550 HTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPP---FVDPFIKYVSKSGTSDDAIAFLK 606
T+ L+ L +A LL ++ + P + + G ++ +
Sbjct: 408 TVTHTALLNGLCKVGKTSEAWELLNKSEEEWWTPSDITYSVVMHGFRREGKLKESCDVVV 467
Query: 607 GMTSKR-FPSMSVVLCLFAAFFQARRHSEAQDLLSKC 642
M K FP+ + L A + R+ +EA+D + +C
Sbjct: 468 QMLQKGFFPTTVEINLLIHALCKDRKPAEAKDFMEQC 504
>gi|297797589|ref|XP_002866679.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297312514|gb|EFH42938.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 915
Score = 62.8 bits (151), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 70/275 (25%), Positives = 115/275 (41%), Gaps = 17/275 (6%)
Query: 375 TFLLRKIVVSKQLD--MRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILK 432
T L+ + V +++D M LF K+ +++ T ++KAL R E ++K
Sbjct: 292 THLIHGLCVERRIDEAMDLFVKM----KDDDCYPTVRTYTVLIKALCGSERKSEALNLVK 347
Query: 433 AMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAG 492
MEE G + + + + L S K ++A E + M G + +LI G+C G
Sbjct: 348 EMEEKGIKPNIHTYTVLIDSLCSQCKLEKARELLGQMLEKGLMPNVITYNALINGYCKRG 407
Query: 493 DLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTT 552
++ A D + M E + L+ YC +N + V N + E + P T
Sbjct: 408 MIEDALDVVELM-ESRNLRPNTRTYNELIKGYCKRN--VHKAMGVLNKMLERKVLPDVVT 464
Query: 553 YEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPF-----IKYVSKSGTSDDAIAFLKG 607
Y LI F A LL LM D G P DP+ I + KS ++A
Sbjct: 465 YNSLIDGQCRSGNFDSAYRLLSLMNDRGLVP--DPWTYTSMIDSLCKSKRVEEACDLFDS 522
Query: 608 MTSKR-FPSMSVVLCLFAAFFQARRHSEAQDLLSK 641
+ K P++ + L + +A + +EA +L K
Sbjct: 523 LEQKDVIPNVVMYTALIDGYCKAGKVNEAHLMLEK 557
Score = 59.7 bits (143), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 72/338 (21%), Positives = 139/338 (41%), Gaps = 30/338 (8%)
Query: 278 GDEPK-KALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEM 336
G E K +AL + EE G +K + +Y + L + +++ ++L +M KG +
Sbjct: 335 GSERKSEALNLVKEMEEKG-IKPNIHTYTVLIDSLCSQCKLEKARELLGQMLEKGLMPNV 393
Query: 337 ETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKI----------VVSKQ 386
T ++ + +R M+++A+D+ E + +P+ L++ V++K
Sbjct: 394 ITYNALINGYCKRGMIEDALDVVELMESRNLRPNTRTYNELIKGYCKRNVHKAMGVLNKM 453
Query: 387 LDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMK 446
L+ ++ VV NS++ G ++L M + G +
Sbjct: 454 LERKVLPDVVTY-------------NSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDPWTY 500
Query: 447 SKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVE 506
+ + L + + +EA + D +E M+ +LI G+C AG +++A +KM+
Sbjct: 501 TSMIDSLCKSKRVEEACDLFDSLEQKDVIPNVVMYTALIDGYCKAGKVNEAHLMLEKMLS 560
Query: 507 KEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGF 566
K ++ + L++ C+ + +A V+ DL+P +T LI LL F
Sbjct: 561 KNCLPNS-LTFNALIHGLCTDGKLKEATLLEEKMVK-IDLQPTVSTDTILIHRLLKDGDF 618
Query: 567 KDALSLLCLMKDHGFPP---FVDPFIKYVSKSGTSDDA 601
A M G P FI+ + G DA
Sbjct: 619 DHAYRRFQQMLSSGTKPDAHTYTTFIQTYCREGRLQDA 656
Score = 55.5 bits (132), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 78/343 (22%), Positives = 132/343 (38%), Gaps = 29/343 (8%)
Query: 280 EPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETC 339
+PK AL F W ++ KH SY ++ ++L + +K+ M +++C
Sbjct: 102 DPKTALNFSHWISQNPRYKHSVYSYASLLTLLINNGYVGVVFKIRLLM--------IKSC 153
Query: 340 VKVLGRFSERNMVK-----EAVDL-YEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFS 393
V ++ + E+ +L Y+ + C N + F L + KQ+ M +
Sbjct: 154 DSVADTLFVLDLCRKMNKDESFELKYKLIIGCYNTLLNSLARFGL--VDEMKQVYMEMLE 211
Query: 394 KVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRL 453
V N+ T N ++ VG + E N+ + + E G + +
Sbjct: 212 DKV-----CPNIYT---YNKMVNGYCKVGNVEEANQYVSMIVEAGLDPDFFTYTSLIMGY 263
Query: 454 SSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHA 513
D A + M G + + LI G CV +D+A D F KM + +
Sbjct: 264 CQRKDLDSAFKVFKEMPLKGCRRNEVAYTHLIHGLCVERRIDEAMDLFVKMKDDDCYPTV 323
Query: 514 GYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLL 573
+L+ C R +A V + E +KP TY LI +L Q + A LL
Sbjct: 324 -RTYTVLIKALCGSERKSEALNLVKE-MEEKGIKPNIHTYTVLIDSLCSQCKLEKARELL 381
Query: 574 CLMKDHGFPPFV---DPFIKYVSKSGTSDDAIAFLKGMTSKRF 613
M + G P V + I K G +DA+ ++ M S+
Sbjct: 382 GQMLEKGLMPNVITYNALINGYCKRGMIEDALDVVELMESRNL 424
>gi|297740763|emb|CBI30945.3| unnamed protein product [Vitis vinifera]
Length = 796
Score = 62.8 bits (151), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 87/431 (20%), Positives = 165/431 (38%), Gaps = 27/431 (6%)
Query: 228 GSIDNSIEKVASRICKVVR-SDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALI 286
G D S + IC+++ W +E +LR L + V V+ DE + AL
Sbjct: 155 GGEDESRHPLVREICRLIELRSAWNPKLEGELRHLLRSLKPRQVCAVLQLQTDE-RVALR 213
Query: 287 FFRWAEESGFVKHD----ESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKV 342
FF WA+ +HD ++ + R + +VL M+ G E ++ C
Sbjct: 214 FFYWADRQWRYRHDPIRRPEAFGYVMVSYSRAGKLRNAMRVLTMMQKAGIEPDLSICNTA 273
Query: 343 LGRFSERNMVKEAVDLYEFAMACKNKPSV---NCCTFLLRKIVVSKQLDMRLFSKVVRVF 399
+ N + +AV E + +P+V NC ++ D+ + +
Sbjct: 274 IHVLVMGNRLDKAVRFLERMQIVEIEPNVITYNC--------LIKGYCDLHRLEDAMELI 325
Query: 400 RE---NGNVLTDAMLNSVLKALISVGRMGECNKIL-KAMEEGGFIASSNMKSKIAFRLSS 455
E G +V+ L R+ E ++ K +++ + + LS
Sbjct: 326 AEMPFKGCSPDKISYYTVMGFLCKEKRIKEVRLLMEKMLKDSNLLPDQVTYNTFVHMLSK 385
Query: 456 AGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGY 515
G DEA EF+ E V + +++ C G +DKA + +M K G
Sbjct: 386 HGHGDEALEFLREAEERRFRVDKVGYSAIVHSFCREGRMDKAKEIVNEMFSK-GCIPDVV 444
Query: 516 AIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCL 575
++N C + R +D K + + ++ KP +Y L+ L +A ++ +
Sbjct: 445 TYTSVINGLC-QERKVDQAKKMLRQMYKHGCKPNTVSYTALLNGLCKNGNSLEAREMMNM 503
Query: 576 MKDHGFPPFVDPF---IKYVSKSGTSDDAIAFLKGMTSKR-FPSMSVVLCLFAAFFQARR 631
++ + P + + + G S +A ++ M K FP+ + L + Q +
Sbjct: 504 SEEDWWIPNAITYSVLMHGFRREGKSSEACDLVREMIKKGFFPTPVEINLLIQSLCQEEK 563
Query: 632 HSEAQDLLSKC 642
EA+ + +C
Sbjct: 564 VDEAKRFMEQC 574
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 79/327 (24%), Positives = 133/327 (40%), Gaps = 17/327 (5%)
Query: 254 VERQLRDLN-----VTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMA 308
+E+ L+D N VT++ + GDE AL F R AEE F + D+ Y+A+
Sbjct: 360 MEKMLKDSNLLPDQVTYNTFVHMLSKHGHGDE---ALEFLREAEERRF-RVDKVGYSAIV 415
Query: 309 SVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNK 368
RE +D+ ++++EM SKG ++ T V+ + V +A + K
Sbjct: 416 HSFCREGRMDKAKEIVNEMFSKGCIPDVVTYTSVINGLCQERKVDQAKKMLRQMYKHGCK 475
Query: 369 PSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVL-KALISVGRMGEC 427
P+ T LL + + L ++ + E + +A+ SVL G+ E
Sbjct: 476 PNTVSYTALLNGLCKNGN---SLEAREMMNMSEEDWWIPNAITYSVLMHGFRREGKSSEA 532
Query: 428 NKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKG 487
+++ M + GF + + + L K DEA FM+ +G V + ++I G
Sbjct: 533 CDLVREMIKKGFFPTPVEINLLIQSLCQEEKVDEAKRFMEQCLNNGCAVNVVNFTTVIHG 592
Query: 488 HCVAGDLDKAADCFQKM-VEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDL 546
C DL+ A M + + Y +++ K R +A K +R L
Sbjct: 593 FCQKDDLEAALSLLDDMYLSNKHPDVVTYTT--IIDALGKKGRIEEATKLAMKMLR-VGL 649
Query: 547 KPWHTTYEELIKNLLVQRGFKDALSLL 573
P TY +I +D L LL
Sbjct: 650 IPTPVTYRTVIHQYCRMGRVEDLLKLL 676
>gi|224133318|ref|XP_002321537.1| predicted protein [Populus trichocarpa]
gi|222868533|gb|EEF05664.1| predicted protein [Populus trichocarpa]
Length = 834
Score = 62.8 bits (151), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 81/366 (22%), Positives = 144/366 (39%), Gaps = 15/366 (4%)
Query: 233 SIEKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAE 292
S V + +++R WG E L +LN V+ +L D AL FF W +
Sbjct: 271 STGHVVENVSQILRQLRWGPSAEEALVNLNCHMDAYQANQVLKQLQDH-TVALGFFHWLK 329
Query: 293 ESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMV 352
+ KHD +Y M +LGR K+LD+M G + + T +++ + N +
Sbjct: 330 QLPGFKHDGYTYTTMVGILGRAKQFVAINKLLDQMVRDGCQPTVVTYNRLIHSYGRANYL 389
Query: 353 KEAVDLYEFAMACKNKPS-VNCCTFL-LRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAM 410
+AV+++ +P V CT + + M ++ ++ M
Sbjct: 390 NDAVEVFNQMQKAGCEPDRVTYCTLIDIHAKAGFLNFAMEMYQRMQAAGLSPDTFTYSVM 449
Query: 411 LNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHME 470
+N + KA G + +K+ M E G + + + + + A A + M+
Sbjct: 450 INCLGKA----GHLAAADKLFCEMIEQGCVPNLVTYNIMIALQAKARNYQNALKLYRDMQ 505
Query: 471 ASGSDVGDKMWVSLIK---GHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSK 527
+G + DK+ S++ GH +G LD+A F +M K LLV+ +
Sbjct: 506 NAGFE-PDKVTYSIVMEVLGH--SGYLDEAEAIFSEMKRKNWVPDEP-VYGLLVDLWGKA 561
Query: 528 NRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDP 587
A ++ + + L P T L+ L DA +LL M + G P +
Sbjct: 562 GNVEKAWEW-YQAMLHAGLCPNVPTCNSLLSAFLRVNRLPDAYNLLQSMLNLGLNPSLQT 620
Query: 588 FIKYVS 593
+ +S
Sbjct: 621 YTLLLS 626
>gi|116309903|emb|CAH66938.1| OSIGBa0116M22.5 [Oryza sativa Indica Group]
Length = 568
Score = 62.8 bits (151), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 77/334 (23%), Positives = 146/334 (43%), Gaps = 14/334 (4%)
Query: 282 KKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCV- 340
+ AL R E G + ++ +Y + S + +D KV DEM +KG E++ E +
Sbjct: 202 QAALDIMREMRERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKG-EVKPEAVMY 260
Query: 341 -KVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFS--KVVR 397
++G + ++ + A+ LY M + ++ T+ L +V + +D R ++V
Sbjct: 261 NALIGGYCDQGKLDTAL-LYRDRMVERGV-AMTVATYNL--LVHALFMDGRGTEAYELVE 316
Query: 398 VFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAG 457
G L N ++ G + + +I + M G A+ + + + LS G
Sbjct: 317 EMGGKGLALDVFTYNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTSLIYALSKKG 376
Query: 458 KKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAI 517
+ E ++ D G ++ +LI H +G++D+A + +M EK+ +
Sbjct: 377 QVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEM-EKKRIAPDDVTY 435
Query: 518 DLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMK 577
+ L+ C R +A K + + ++P TY LI ++ KDAL + M
Sbjct: 436 NTLMRGLCLLGRVDEARKLIDEMTKR-GIQPDLVTYNTLISGYSMKGDVKDALRIRNEMM 494
Query: 578 DHGFPPFV---DPFIKYVSKSGTSDDAIAFLKGM 608
+ GF P + + I+ + K+G DDA +K M
Sbjct: 495 NKGFNPTLLTYNALIQGLCKNGQGDDAENMVKEM 528
Score = 53.5 bits (127), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 118/560 (21%), Positives = 216/560 (38%), Gaps = 98/560 (17%)
Query: 43 TLSSLLPTSSHTFYSRFSRLPICYSRLINLIDPKNPNFRNPMICSYSSEPAMEQKESDFT 102
+L +LL T+S + L + YSR+ +L P + +P++ + S PA F
Sbjct: 89 SLPNLLLTASAAVRPHATSLRL-YSRMKSLSLPISTASLHPLLSALPSAPA-------FA 140
Query: 103 VVSDIFYKFSDVNDISKQLELSGVVFTHEMVLKVLKNLESSPDEARRFFNWVLEKESERL 162
+ +D+F +L L T ++L+ +L S+ AR L ++ R
Sbjct: 141 LFADMF-----------RLRLPLCTTTFNIMLR---HLCSAGKPARAL---ELLRQMPRP 183
Query: 163 SSKTYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRNKMTEKFEKEGLESDLEKLK 222
++ TYN ++ G VQ ++ M+++G G+A N+ T
Sbjct: 184 NAVTYNTVIAGFCSRGRVQAALDIMREMRERG-GIAP---NQYT---------------- 223
Query: 223 GIFATGSIDNSIEKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPK 282
+ T V S CKV R D + L V + ++ D+ K
Sbjct: 224 --YGT---------VISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCDQGK 272
Query: 283 --KALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCV 340
AL++ E G V ++YN + L + +++++EM KG +++ T
Sbjct: 273 LDTALLYRDRMVERG-VAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKGLALDVFTYN 331
Query: 341 KVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFR 400
++ + VK+A++++E N +R VV+
Sbjct: 332 ILINGHCKEGNVKKALEIFE-----------NMSRRGVRATVVT---------------- 364
Query: 401 ENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKD 460
S++ AL G++ E +K+ G + + + S++G D
Sbjct: 365 ----------YTSLIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNID 414
Query: 461 EANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLL 520
A E M ME D + +L++G C+ G +D+A +M K G + L
Sbjct: 415 RAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMT-KRGIQPDLVTYNTL 473
Query: 521 VNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHG 580
++ Y K DA + + N + P TY LI+ L DA +++ M ++G
Sbjct: 474 ISGYSMKGDVKDALR-IRNEMMNKGFNPTLLTYNALIQGLCKNGQGDDAENMVKEMVENG 532
Query: 581 FPPFVDPFIKYVSKSGTSDD 600
P +I + T D+
Sbjct: 533 ITPDDSTYISLIEGLTTEDE 552
>gi|357440039|ref|XP_003590297.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355479345|gb|AES60548.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 661
Score = 62.8 bits (151), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 74/334 (22%), Positives = 134/334 (40%), Gaps = 33/334 (9%)
Query: 263 VTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWK 322
+ S +L+ ++ + D+ K AL FRWA KH + SY+ M +LGR +D+ +
Sbjct: 82 IHLSENLINRLLFRYKDDWKSALAIFRWAGSHSNFKHSQQSYDMMVDILGRMKAMDKMRE 141
Query: 323 VLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLY---EFAMACKNKPSVNCCTFLLR 379
+L+EMR + + + T KV+ RF K+AV ++ +F KN S+N L
Sbjct: 142 ILEEMRQESL-ITLNTIAKVMRRFVGARQWKDAVRIFDDLQFLGLEKNTESMNVLLDTLC 200
Query: 380 K---IVVSKQLDMRLFSKV----------------VRVFRENGNVLTDAMLNSVLKALIS 420
K + ++++ + L + +R E + + +IS
Sbjct: 201 KEKFVEQAREIYLELKHYIAPNAHTFNILIHGWCNIRRVEEAHWTIQEMKGYGCRPCVIS 260
Query: 421 VGRMGEC----------NKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHME 470
+ +C +L M+ + + I L+ A K +EA + ++ M
Sbjct: 261 YSTIIQCYCQEQNFDRVYDLLDEMQAQNCSPNVVTYTTIMCALAKAEKFEEALQVVERMN 320
Query: 471 ASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRA 530
A G + SLI AG +D A F+ + K + + +++ +C +
Sbjct: 321 AVGCRPDTLFFNSLIYTLGRAGRIDDATHVFKVAMPKASVAPNTSTYNSMISMFCYYAQE 380
Query: 531 IDACKFVHNCVREYDLKPWHTTYEELIKNLLVQR 564
A + + KP TY LIK+ R
Sbjct: 381 ERAFGILKEMEKSGLCKPDIQTYHPLIKSCFKMR 414
>gi|302806665|ref|XP_002985064.1| hypothetical protein SELMODRAFT_424099 [Selaginella moellendorffii]
gi|300147274|gb|EFJ13939.1| hypothetical protein SELMODRAFT_424099 [Selaginella moellendorffii]
Length = 1636
Score = 62.8 bits (151), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 77/330 (23%), Positives = 143/330 (43%), Gaps = 13/330 (3%)
Query: 284 ALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVL 343
A++ FR E S D +YN M + L + D +D ++L+EM G+ + + VL
Sbjct: 215 AVLHFR--EMSKTCPPDSVTYNTMINGLSKSDRLDDAIRLLEEMVDNGFAPNVFSYNTVL 272
Query: 344 GRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLD--MRLFSKVVRVFRE 401
F + N V+ A+ L E + P V T ++ + Q+D R+ K+++ +
Sbjct: 273 HGFCKANRVENALWLLEQMVTRGCPPDVVSYTTVINGLCKLDQVDEACRVMDKMIQRGCQ 332
Query: 402 NGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDE 461
NV+T +++ VG + ++++ M E G+ ++ + I +
Sbjct: 333 P-NVIT---YGTLVDGFCRVGDLDGAVELVRKMTERGYRPNAITYNNIMHVFCRRNDMER 388
Query: 462 ANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLV 521
A++ + M +G + ++I G C AG L +A D ++M+ + G + L+
Sbjct: 389 AHQVLQMMIQTGCPPDAINYSTIISGFCKAGKLREAHDLLEQMI-RRGCRPDVACLSTLI 447
Query: 522 NTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLM-KDHG 580
+ C K AID+ + + D P Y LI L + +A S L +M K+
Sbjct: 448 DALC-KAAAIDSAQELLRMSIGMDCAPDVVAYSILIHALCKAKRLPEAESWLDVMVKNRC 506
Query: 581 FPPFV--DPFIKYVSKSGTSDDAIAFLKGM 608
+P V + + + KS +DA M
Sbjct: 507 YPDVVTYNSVVDGLCKSRRINDAFLLFDRM 536
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 84/360 (23%), Positives = 141/360 (39%), Gaps = 27/360 (7%)
Query: 265 FSNDLVKFVVDKL------GDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCID 318
F+ L VV K+ GD AL FF WA HD + N + L R +
Sbjct: 805 FTGKLTTTVVGKVLQGVRNGD---AALGFFDWATSQEGYNHDTYTCNCLLQALLR---LK 858
Query: 319 RFWKVLDEMRSK-GYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFL 377
R L R+K M T ++ + A +L + M P +
Sbjct: 859 RPKDALQVYRNKLCCSPNMFTFTILIHGLCRAGDIGTAYELLK-EMPRHGVPQ----NVI 913
Query: 378 LRKIVVSKQLDMRLFSKVVRVFR---ENGNVLTDAML-NSVLKALISVGRMGECNKILKA 433
L +V+ R + +F+ E+G+ D ++++ +L+ G++ + ++++
Sbjct: 914 LHNVVIKGLCSARKLDSALELFKEMEESGSCPPDVFTYSTIVDSLVKSGKVDDACRLVED 973
Query: 434 MEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGD 493
M G + S + L AGK DEA + M SG + ++I GHC G
Sbjct: 974 MVSKGCSPNVVTYSSLLHGLCKAGKLDEATALLQRMTRSGCSPNIVTYNTIIDGHCKLGR 1033
Query: 494 LDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTY 553
+D+A ++MV+ G +L++ +C +A DA V V E P TY
Sbjct: 1034 IDEAYHLLEEMVDG-GCQPNVVTYTVLLDAFCKCGKAEDAIGLVEVMV-EKGYVPNLFTY 1091
Query: 554 EELIKNLLVQRGFKDALSLLCLMKDHGFPPFV---DPFIKYVSKSGTSDDAIAFLKGMTS 610
L+ + + A LL M G P V + I + K+ + + L+ M S
Sbjct: 1092 NSLLDMFCKKDEVERACQLLSSMIQKGCVPNVVSYNTVIAGLCKATKVHEGVLLLEQMLS 1151
Score = 59.3 bits (142), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 93/418 (22%), Positives = 152/418 (36%), Gaps = 53/418 (12%)
Query: 265 FSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKH------------------------- 299
S ++V V+ +L D P AL+FF WAE +H
Sbjct: 91 LSPEIVGKVLQRLID-PGAALVFFEWAETRDGYQHEIFCCNCLLNVLVKAHQYSQAHDLF 149
Query: 300 ----------DESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSER 349
D +Y+ + S R I +++ DEM KG + +L +
Sbjct: 150 RSRIEGQWGGDTVTYSTLISGFIRAGKILPAYELFDEMNRKGLKAHAGVHKSILRGLCDA 209
Query: 350 NMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLD--MRLFSKVVRVFRENGNVLT 407
+AV L+ M+ P ++ + S +LD +RL ++V +NG
Sbjct: 210 GQCSDAV-LHFREMSKTCPPDSVTYNTMINGLSKSDRLDDAIRLLEEMV----DNGFAPN 264
Query: 408 DAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMD 467
N+VL R+ +L+ M G + + L + DEA MD
Sbjct: 265 VFSYNTVLHGFCKANRVENALWLLEQMVTRGCPPDVVSYTTVINGLCKLDQVDEACRVMD 324
Query: 468 HMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSK 527
M G + +L+ G C GDLD A + +KM E+ G + +++ +C +
Sbjct: 325 KMIQRGCQPNVITYGTLVDGFCRVGDLDGAVELVRKMTER-GYRPNAITYNNIMHVFCRR 383
Query: 528 NRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFV-- 585
N A + + + + P Y +I ++A LL M G P V
Sbjct: 384 NDMERAHQVLQMMI-QTGCPPDAINYSTIISGFCKAGKLREAHDLLEQMIRRGCRPDVAC 442
Query: 586 -DPFIKYVSKSGTSDDAIAFLK---GMTSKRFPSMSVVLCLFAAFFQARRHSEAQDLL 639
I + K+ D A L+ GM P + L A +A+R EA+ L
Sbjct: 443 LSTLIDALCKAAAIDSAQELLRMSIGMDCA--PDVVAYSILIHALCKAKRLPEAESWL 498
Score = 58.9 bits (141), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 122/562 (21%), Positives = 221/562 (39%), Gaps = 63/562 (11%)
Query: 128 FTHEMVLKVLKNLESSPDEARRFFNWVLEKESERLSSKTYNLMLR--------------- 172
T +V KVL+ + + D A FF+W +E + T N +L+
Sbjct: 809 LTTTVVGKVLQGVRNG-DAALGFFDWATSQEGYNHDTYTCNCLLQALLRLKRPKDALQVY 867
Query: 173 -------------IVGVHGL-----VQEFWGLVDVMKKKGYGVASHVRNKMTEKF-EKEG 213
+ +HGL + + L+ M + G + N + +
Sbjct: 868 RNKLCCSPNMFTFTILIHGLCRAGDIGTAYELLKEMPRHGVPQNVILHNVVIKGLCSARK 927
Query: 214 LESDLEKLKGIFATGSIDNSIEKVASRICKVVRSDIWGDDVERQLRDLN--------VTF 265
L+S LE K + +GS + ++ + +V+S DD R + D+ VT+
Sbjct: 928 LDSALELFKEMEESGSCPPDVFTYSTIVDSLVKSGKV-DDACRLVEDMVSKGCSPNVVTY 986
Query: 266 SNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMA---SVLGREDCIDRFWK 322
S+ L DE A + SG + +YN + LGR ID +
Sbjct: 987 SSLLHGLCKAGKLDE---ATALLQRMTRSG-CSPNIVTYNTIIDGHCKLGR---IDEAYH 1039
Query: 323 VLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIV 382
+L+EM G + + T +L F + ++A+ L E + P++ LL +
Sbjct: 1040 LLEEMVDGGCQPNVVTYTVLLDAFCKCGKAEDAIGLVEVMVEKGYVPNLFTYNSLLD--M 1097
Query: 383 VSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIAS 442
K+ ++ +++ + G V N+V+ L ++ E +L+ M +
Sbjct: 1098 FCKKDEVERACQLLSSMIQKGCVPNVVSYNTVIAGLCKATKVHEGVLLLEQMLSNNCVPD 1157
Query: 443 SNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQ 502
+ I + + D A E + ++ SG + SL+ G C + D+A +
Sbjct: 1158 IVTFNTIIDAMCKTYRVDIAYELFNLIQESGCTPNLVTYNSLVHGLCKSRRFDQAEYLLR 1217
Query: 503 KMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLV 562
+M K+G S + +++ C R A K + + L P TY +I +L
Sbjct: 1218 EMTRKQGCSPDIITYNTVIDGLCKSKRVDRAYKLFLQMLSD-GLAPDDVTYSIVISSLCK 1276
Query: 563 QRGFKDALSLLCLMKDHGFPPFVDPF---IKYVSKSGTSDDAIAFLKGMTSK-RFPSMSV 618
R +A ++L LM +GF P + I K+G D A+ L+ + SK +P + V
Sbjct: 1277 WRFMDEANNVLELMLKNGFDPGAITYGTLIDGFCKTGNLDKALEILQLLLSKGSYPDV-V 1335
Query: 619 VLCLFAAFFQAR-RHSEAQDLL 639
+F + R R +A +LL
Sbjct: 1336 TFSIFIDWLSKRGRLRQAGELL 1357
Score = 55.8 bits (133), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 96/460 (20%), Positives = 180/460 (39%), Gaps = 46/460 (10%)
Query: 164 SKTYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRNKMTEKFEKEG-LESDLEKLK 222
S TYN M+ + + + L++ M G+ N + F K +E+ L L+
Sbjct: 230 SVTYNTMINGLSKSDRLDDAIRLLEEMVDNGFAPNVFSYNTVLHGFCKANRVENALWLLE 289
Query: 223 GIFATGSIDN--SIEKVASRICKVVRSD----IWGDDVERQLRDLNVTFSNDLVKFVVDK 276
+ G + S V + +CK+ + D + ++R + +T+ + F +
Sbjct: 290 QMVTRGCPPDVVSYTTVINGLCKLDQVDEACRVMDKMIQRGCQPNVITYGTLVDGFC--R 347
Query: 277 LGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEM 336
+GD A+ R E G+ + + +YN + V R + ++R +VL M G +
Sbjct: 348 VGD-LDGAVELVRKMTERGY-RPNAITYNNIMHVFCRRNDMERAHQVLQMMIQTGCPPDA 405
Query: 337 ETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLD-----MRL 391
++ F + ++EA DL E + +P V C + L+ + + +D +R+
Sbjct: 406 INYSTIISGFCKAGKLREAHDLLEQMIRRGCRPDVACLSTLIDALCKAAAIDSAQELLRM 465
Query: 392 ------------FSKVVRVFRE-----NGNVLTDAML-----------NSVLKALISVGR 423
+S ++ + D M+ NSV+ L R
Sbjct: 466 SIGMDCAPDVVAYSILIHALCKAKRLPEAESWLDVMVKNRCYPDVVTYNSVVDGLCKSRR 525
Query: 424 MGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVS 483
+ + + M G + S + D A + ++ M+ + + +
Sbjct: 526 INDAFLLFDRMRAAGVMPDVVTYSIVIHSFCKDNNLDSAFKMLERMKEAKCVPDVVTYSA 585
Query: 484 LIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVRE 543
LI G C AG +DKA D FQ+M+ G + + L++ C N+ A + + +R+
Sbjct: 586 LINGLCKAGTVDKAFDVFQEML-GCGCAPNLVTYNTLIDGLCKINKVEQAAEMLE-IMRK 643
Query: 544 YDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPP 583
P TY LI L ++A +L MKD G P
Sbjct: 644 QSCTPDSITYTCLINGLCNASRLEEAWRVLREMKDKGCLP 683
Score = 54.7 bits (130), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 121/564 (21%), Positives = 216/564 (38%), Gaps = 64/564 (11%)
Query: 69 LINLIDPKNP--NFRNPMICSYSSEPAMEQKESDFTVVSDIFYKFSDVN---DISKQLEL 123
L+ L PK+ +RN + CS P M FT++ + D+ ++ K++
Sbjct: 854 LLRLKRPKDALQVYRNKLCCS----PNM----FTFTILIHGLCRAGDIGTAYELLKEMPR 905
Query: 124 SGV---VFTHEMVLKVLKNLESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLV 180
GV V H +V+K L + D A F + E S TY+ ++ + G V
Sbjct: 906 HGVPQNVILHNVVIKGLCSARKL-DSALELFKEMEESGSCPPDVFTYSTIVDSLVKSGKV 964
Query: 181 QEFWGLVDVMKKKGYGVASHVRNKMTEKFEKEG-LESDLEKLKGIFATGSIDNSI--EKV 237
+ LV+ M KG + + K G L+ L+ + +G N + +
Sbjct: 965 DDACRLVEDMVSKGCSPNVVTYSSLLHGLCKAGKLDEATALLQRMTRSGCSPNIVTYNTI 1024
Query: 238 ASRICKVVRSD----IWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEE 293
CK+ R D + + V+ + VT++ L F K G + + A+ E
Sbjct: 1025 IDGHCKLGRIDEAYHLLEEMVDGGCQPNVVTYTVLLDAFC--KCG-KAEDAIGLVEVMVE 1081
Query: 294 SGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVK 353
G+V + +YN++ + ++D ++R ++L M KG + + V+ + V
Sbjct: 1082 KGYVP-NLFTYNSLLDMFCKKDEVERACQLLSSMIQKGCVPNVVSYNTVIAGLCKATKVH 1140
Query: 354 EAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDM------------------------ 389
E V L E ++ P + ++ + + ++D+
Sbjct: 1141 EGVLLLEQMLSNNCVPDIVTFNTIIDAMCKTYRVDIAYELFNLIQESGCTPNLVTYNSLV 1200
Query: 390 ------RLFSKVVRVFRE----NGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGF 439
R F + + RE G N+V+ L R+ K+ M G
Sbjct: 1201 HGLCKSRRFDQAEYLLREMTRKQGCSPDIITYNTVIDGLCKSKRVDRAYKLFLQMLSDGL 1260
Query: 440 IASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAAD 499
S + L DEAN ++ M +G D G + +LI G C G+LDKA +
Sbjct: 1261 APDDVTYSIVISSLCKWRFMDEANNVLELMLKNGFDPGAITYGTLIDGFCKTGNLDKALE 1320
Query: 500 CFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKN 559
Q ++ K G+ + ++ + R A + + +R L P TY L+K
Sbjct: 1321 ILQLLLSK-GSYPDVVTFSIFIDWLSKRGRLRQAGELLETMLRA-GLVPDTVTYNTLLKG 1378
Query: 560 LLVQRGFKDALSLLCLMKDHGFPP 583
+DA+ L +M+ G P
Sbjct: 1379 FCDASLTEDAVDLFEVMRQCGCEP 1402
>gi|255584056|ref|XP_002532772.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223527482|gb|EEF29611.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 647
Score = 62.8 bits (151), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 101/464 (21%), Positives = 176/464 (37%), Gaps = 66/464 (14%)
Query: 140 LESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVAS 199
L++ PD A RFF W +++ + + Y ++ ++ +G++ + K+ G +
Sbjct: 120 LQTKPDVAIRFFTWAGKQKKYTHNLECYVSLIDVLATNGVLDSVKSVFSKFKEMGLIMTV 179
Query: 200 HVRNKMTEKFEKEGLESDL------EKLKGI---------FATGSIDNSIEKVASRICKV 244
+ N + + F G+ ++ K GI G +++ + A R+ +V
Sbjct: 180 YSSNSLIKSFGNLGMVEEVLWVWRRMKENGIEPSLFSYNFLVNGLVNSKFIESAERVFEV 239
Query: 245 VRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSY 304
+ + G DV VT+ N ++K + + +KA + A E V D+ +Y
Sbjct: 240 MENGKIGPDV--------VTY-NTMIKGYCEV--GKTRKAFEKLK-AMELRNVAPDKITY 287
Query: 305 NAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMA 364
+ E D + EM KG E+ V+G + E ++E
Sbjct: 288 MTLIQACYAEGDFDSCLGLYHEMDEKGLEIPPHVYSLVIGGLCKDGKRVEGYTVFE---- 343
Query: 365 CKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRM 424
N S C NV A+ +++ + G M
Sbjct: 344 --NMISKGC----------------------------KANV---AIYTALIDSNAKCGNM 370
Query: 425 GECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSL 484
GE + K M++ G I L +G+ DEA E+M+ G V + SL
Sbjct: 371 GEAMLLFKRMKKEGLEPDEVTYGVIVNSLCKSGRLDEALEYMEFCSGKGVAVNAMFYSSL 430
Query: 485 IKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREY 544
I G +G +D+A F +MV K+G Y + L++ +K ID + +
Sbjct: 431 IDGLGKSGRVDEAERIFYEMV-KKGCPPDSYCYNALIDAL-AKCGKIDEALALSKRMEVD 488
Query: 545 DLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPF 588
TY LI L + ++AL+L LM D G P F
Sbjct: 489 GCDQTVYTYTILITGLFREHRNEEALTLWDLMIDKGITPTAAAF 532
>gi|356574119|ref|XP_003555199.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g08310, mitochondrial-like [Glycine max]
Length = 942
Score = 62.8 bits (151), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 66/278 (23%), Positives = 115/278 (41%), Gaps = 8/278 (2%)
Query: 282 KKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVK 341
K A FF WA GF +H +YN++AS+L R +L ++ +
Sbjct: 83 KLAHSFFHWASNQGF-RHTCYTYNSIASILSRSHQTSPLKTLLKQISDSAPCSFTPGALG 141
Query: 342 VLGR-FSERNMVKEAVDLY-EFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVF 399
L R + +EA L+ E + P+ C LL + S ++D L +
Sbjct: 142 FLIRCLGHAGLAREAHHLFDEMRLKGLCVPNDYCYNCLLEALSKSGEVD--LIEARLEEM 199
Query: 400 RENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKK 459
+ G L +L+A + R E ++ M E G++ ++ S +A S G
Sbjct: 200 KGFGWEFDKFTLTPLLQAYCNARRFDEALRVYNVMREKGWV-DGHVCSMLALSFSKWGDV 258
Query: 460 DEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDL 519
D+A E ++ ME G + +K + LI G G +D+A F M + G + D+
Sbjct: 259 DKAFELVERMEGHGMRLNEKTFCVLIHGFVKEGRVDRALQLFDIMC-RVGFTPPVSLFDV 317
Query: 520 LVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELI 557
L+ C + A + ++E+ + P + +LI
Sbjct: 318 LIGGLCRNGDSHRALSLLSE-MKEFGVTPDVGIFTKLI 354
Score = 49.3 bits (116), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 114/566 (20%), Positives = 210/566 (37%), Gaps = 106/566 (18%)
Query: 128 FTHEMVLKVL-KNLESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGL 186
+T+ + +L ++ ++SP + + + + ++R +G GL +E L
Sbjct: 102 YTYNSIASILSRSHQTSP--LKTLLKQISDSAPCSFTPGALGFLIRCLGHAGLAREAHHL 159
Query: 187 VDVMKKKGYGVAS-HVRNKMTEKFEKEG----LESDLEKLKGIFATGSIDNSIEKVASRI 241
D M+ KG V + + N + E K G +E+ LE++KG F ++ +
Sbjct: 160 FDEMRLKGLCVPNDYCYNCLLEALSKSGEVDLIEARLEEMKG-FGWEFDKFTLTPLLQAY 218
Query: 242 CKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDE 301
C R D LR NV V V + AL F +W +
Sbjct: 219 CNARRFD-------EALRVYNVMREKGWVDGHVCSM-----LALSFSKWGD--------- 257
Query: 302 SSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMET-CVKVLGRFSERNMVKEAVDLYE 360
+D+ +++++ M G + +T CV + G F + V A+ L++
Sbjct: 258 ---------------VDKAFELVERMEGHGMRLNEKTFCVLIHG-FVKEGRVDRALQLFD 301
Query: 361 F-----------------AMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENG 403
C+N S + L D+ +F+K++ F + G
Sbjct: 302 IMCRVGFTPPVSLFDVLIGGLCRNGDSHRALSLLSEMKEFGVTPDVGIFTKLISAFPDRG 361
Query: 404 ---NVLTDA-----------MLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKI 449
+L + + N+VL ++ G M E + L+ M ++SK
Sbjct: 362 VIAKLLEEVPGGEEERTLVLIYNAVLTCYVNDGLMDEACRFLRMM----------IQSKA 411
Query: 450 AFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEG 509
+ + G ++ + + AS S V I G LD A F M K+
Sbjct: 412 SGDVQMDGFFNKVKKLVFPNGASFSIV--------INGLLKNDQLDLALSLFNDM--KQF 461
Query: 510 TSHAGYAI-DLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKD 568
I + L+N+ C NR ++ + + ++E ++P H TY + L ++
Sbjct: 462 VDRPSVLIYNNLINSLCDSNRLEESRELLRE-MKESGVEPTHFTYNSIYGCLCKRKDVLG 520
Query: 569 ALSLLCLMKDHGFPPFVDP---FIKYVSKSGTSDDAIAFLKGMTSKRF-PSMSVVLCLFA 624
A+ +L M+ G P++ +K + G + +A FL M + F P +
Sbjct: 521 AIDMLKGMRACGHEPWIKNSTLLVKELCDHGMAIEACNFLDSMVQQGFLPDIVSYSAAIG 580
Query: 625 AFFQARRHSEAQDLLSKCPRYVRNHA 650
Q + + A L S Y R H
Sbjct: 581 GLIQIQELNRALQLFSD--LYSRGHC 604
Score = 45.8 bits (107), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 63/313 (20%), Positives = 118/313 (37%), Gaps = 35/313 (11%)
Query: 304 YNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAM 363
YN + + L + ++ ++L EM+ G E T + G +R V A+D+ +
Sbjct: 470 YNNLINSLCDSNRLEESRELLREMKESGVEPTHFTYNSIYGCLCKRKDVLGAIDMLKGMR 529
Query: 364 ACKNKP-----------------SVNCCTFL--------LRKIV-----VSKQLDMRLFS 393
AC ++P ++ C FL L IV + + ++ +
Sbjct: 530 ACGHEPWIKNSTLLVKELCDHGMAIEACNFLDSMVQQGFLPDIVSYSAAIGGLIQIQELN 589
Query: 394 KVVRVFRE---NGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIA 450
+ +++F + G+ N +++ L R+ E K+L + GF S + +
Sbjct: 590 RALQLFSDLYSRGHCPDVVASNILMRGLCKAYRVREAEKLLDEIVVKGFFPSVVTYNLLI 649
Query: 451 FRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGT 510
G D+A + M + + +L+ G C A D A + +M E++G
Sbjct: 650 DSWCKNGSVDKAMALLSRMSGEDREPNVITYSTLVDGFCRAERPDDALLVWNEM-ERKGC 708
Query: 511 SHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDAL 570
A L+ C R A ++ + + D+KP Y LI + L A
Sbjct: 709 FPNQIAFMALIYGLCKCCRPTTALHYLRE-MEQKDMKPDSFIYIALISSFLSDMDLASAF 767
Query: 571 SLLCLMKDHGFPP 583
+ M G+ P
Sbjct: 768 EIFKEMVYSGYFP 780
>gi|38344241|emb|CAE02059.2| OJ991113_30.18 [Oryza sativa Japonica Group]
Length = 736
Score = 62.8 bits (151), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 80/352 (22%), Positives = 147/352 (41%), Gaps = 32/352 (9%)
Query: 283 KALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKV 342
KA + GFV D S+Y+ + + L +++ + + EM+ G ++ T +
Sbjct: 206 KAFQLIKEMMRKGFVP-DTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTPDVYTYTIL 264
Query: 343 LGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMR--LFSKVVRVFR 400
+ F + ++++A L+E + P+V T L+ + +KQ+ +F ++V
Sbjct: 265 IDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDAGC 324
Query: 401 ENGNVLTDAMLNSVLKA------------LISVGRMGECNKILKAMEEGGFIASSNMKSK 448
+V A+++ + KA LI + + + +
Sbjct: 325 RPNDVTYGALVDGLCKAGNISKAFEVYAKLIGTSDSADSDFYFPCEDRHTLAPNVVTYGA 384
Query: 449 IAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKE 508
+ L A K D A+E +D M +SG + ++ +LI G C AG +D A + F +M +
Sbjct: 385 LVDGLCKAHKVDHAHELLDAMLSSGCEPNHIVYDALIDGFCKAGKIDSAQEVFLQMTK-- 442
Query: 509 GTSHAGYAIDLLVNTYCS------KNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLV 562
GY V+TY S K+ +D V + + + P TY +I L
Sbjct: 443 ----CGYLPS--VHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCTPNVVTYTAMIDGLCR 496
Query: 563 QRGFKDALSLLCLMKDHGFPPFVDPF---IKYVSKSGTSDDAIAFLKGMTSK 611
+ AL LL LM++ G P V + I + K+G D ++ M+ K
Sbjct: 497 IGESEKALKLLSLMEEKGCSPNVVTYTALIDGLGKAGKIDLSLDLFTQMSRK 548
Score = 49.7 bits (117), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 51/213 (23%), Positives = 89/213 (41%), Gaps = 6/213 (2%)
Query: 287 FFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRF 346
F+ E+ + + +Y A+ L + +D ++LD M S G E ++ F
Sbjct: 365 FYFPCEDRHTLAPNVVTYGALVDGLCKAHKVDHAHELLDAMLSSGCEPNHIVYDALIDGF 424
Query: 347 SERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVL 406
+ + A +++ C PSV+ T L+ ++ +LD+ + KV+ ++
Sbjct: 425 CKAGKIDSAQEVFLQMTKCGYLPSVHTYTSLIDRMFKDGRLDLAM--KVLSQMLKDSCTP 482
Query: 407 TDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAF--RLSSAGKKDEANE 464
+++ L +G + K+L MEE G S N+ + A L AGK D + +
Sbjct: 483 NVVTYTAMIDGLCRIGESEKALKLLSLMEEKG--CSPNVVTYTALIDGLGKAGKIDLSLD 540
Query: 465 FMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKA 497
M G + LI C AG LDKA
Sbjct: 541 LFTQMSRKGCSPNYVTYRVLINHLCAAGLLDKA 573
Score = 40.8 bits (94), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 37/156 (23%), Positives = 64/156 (41%), Gaps = 2/156 (1%)
Query: 405 VLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANE 464
VL + + + L VG+ + +++K M GF+ ++ SK+ L A K ++A
Sbjct: 185 VLNKVNVANFARCLCGVGKFDKAFQLIKEMMRKGFVPDTSTYSKVITFLCHATKVEKAFL 244
Query: 465 FMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTY 524
M+ G + LI C AG +++A F++M G S L++ Y
Sbjct: 245 LFQEMKMVGVTPDVYTYTILIDSFCKAGLIEQAQWLFEEM-RSVGCSPTVVTYTALIHAY 303
Query: 525 CSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNL 560
+ A H V + +P TY L+ L
Sbjct: 304 LKAKQVPQANDIFHRMV-DAGCRPNDVTYGALVDGL 338
>gi|413922833|gb|AFW62765.1| hypothetical protein ZEAMMB73_408366 [Zea mays]
Length = 820
Score = 62.8 bits (151), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 74/351 (21%), Positives = 139/351 (39%), Gaps = 14/351 (3%)
Query: 256 RQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGRED 315
R++ ++ LVK + D ++ L + +E G+ + +Y A+ + RE
Sbjct: 223 REMTQPDMYTHAALVKGLCD--AGRGEEGLCMLQKMKELGW-RPTTRAYAALVDLWCREQ 279
Query: 316 CIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCT 375
+ K+L+EM G + TC V+ + + AV ++E +P+V
Sbjct: 280 KAEEAEKILNEMFDSGLMPCVVTCTIVVNAYCREGRMSGAVRVFESMRFKGCEPNVWTYN 339
Query: 376 FLLRKIVVSKQL--DMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKA 433
+++ + ++ M L ++ RE G N +++ G +G ++L+
Sbjct: 340 AIVQGFCNAGKVYKAMALLDQM----RECGVEPDVVTYNLLIRGQCIDGHIGSAFRLLRL 395
Query: 434 MEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGD 493
ME G A + + L GK DEA D +E G + ++I G C AG
Sbjct: 396 MEGNGLAADQYTYNVLIDALCKTGKVDEACSLFDGLEYRGIRPNSVTFNTVINGLCKAGK 455
Query: 494 LDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTY 553
D A + M+ G + Y + C + + F+ +++ D+KP Y
Sbjct: 456 FDVACTFLENMISA-GYAPDTYTYSPFIENLCKTKGSQEGLFFIDEMLQK-DVKPSTVNY 513
Query: 554 EELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPF---IKYVSKSGTSDDA 601
+I L +R + A + M G P V + ++ G D+A
Sbjct: 514 TIVINRLFNERNYGLATRIWGQMVSQGCSPDVVTYTTSVRAYCNEGRLDEA 564
Score = 49.3 bits (116), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 43/199 (21%), Positives = 83/199 (41%), Gaps = 9/199 (4%)
Query: 387 LDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMK 446
L +RLF+ ++R T A N++++AL + + L M G+ +
Sbjct: 111 LMLRLFA---HMYRHAPPAPTGATYNALIRALCRRADLRHAQRYLSLMVRSGWRPDAFTF 167
Query: 447 SKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVE 506
+ + + + A++ M G + +LI+G C AG +D+A + F++M +
Sbjct: 168 NSLILGYCRTQQLEVAHDLFCKMPFRGFSQDAVSYAALIEGFCEAGRIDEALELFREMTQ 227
Query: 507 KEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGF 566
+ +HA LV C R + + ++E +P Y L+ ++
Sbjct: 228 PDMYTHAA-----LVKGLCDAGRGEEGLCMLQK-MKELGWRPTTRAYAALVDLWCREQKA 281
Query: 567 KDALSLLCLMKDHGFPPFV 585
++A +L M D G P V
Sbjct: 282 EEAEKILNEMFDSGLMPCV 300
>gi|20219038|gb|AAM15782.1|AC104428_3 Putative indole-3-acetate beta-glucosyltransferase [Oryza sativa
Japonica Group]
gi|108706351|gb|ABF94146.1| Rf1 protein, mitochondrial precursor, putative [Oryza sativa
Japonica Group]
gi|125585039|gb|EAZ25703.1| hypothetical protein OsJ_09536 [Oryza sativa Japonica Group]
Length = 648
Score = 62.8 bits (151), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 72/342 (21%), Positives = 136/342 (39%), Gaps = 8/342 (2%)
Query: 303 SYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFA 362
+YN++ L R D+ W+V EM G ++ + ++G F ++EA+ +Y+
Sbjct: 228 TYNSVLKGLCRSGMWDKAWEVFKEMDDFGVAPDVRSFTILIGGFCRVGEIEEALKIYKEM 287
Query: 363 MACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVG 422
KP + + L+ ++D + +R R G V + V+ G
Sbjct: 288 RHRGIKPDLVSFSCLIGLFARRGKMDHAM--AYLREMRCFGLVPDGVIYTMVIGGFCRAG 345
Query: 423 RMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWV 482
M + ++ M G + + + L + +A ++ M G +
Sbjct: 346 LMSDALRVRDEMVGCGCLPDVVTYNTLLNGLCKERRLLDAEGLLNEMRERGVPPDLCTFT 405
Query: 483 SLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVR 542
+LI G+C+ G LDKA F M+ + + L++ C + +D + + +
Sbjct: 406 TLIHGYCIEGKLDKALQLFDTMLNQRLRPDI-VTYNTLIDGMCRQG-DLDKANDLWDDMH 463
Query: 543 EYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFV---DPFIKYVSKSGTSD 599
++ P H TY LI + + +DA L M + G P + + IK +SG
Sbjct: 464 SREIFPNHVTYSILIDSHCEKGQVEDAFGFLDEMINKGILPNIMTYNSIIKGYCRSGNVS 523
Query: 600 DAIAFL-KGMTSKRFPSMSVVLCLFAAFFQARRHSEAQDLLS 640
FL K M +K P + L + + + +A LL+
Sbjct: 524 KGQKFLQKMMVNKVSPDLITYNTLIHGYIKEDKMHDAFKLLN 565
Score = 55.5 bits (132), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 71/323 (21%), Positives = 124/323 (38%), Gaps = 50/323 (15%)
Query: 244 VVRSDIWGD--DVERQLRDLNVTFSNDLVKFVVDKLG----DEPKKALIFFRWAEESGFV 297
+ RS +W +V +++ D V + D+ F + G E ++AL ++ G +
Sbjct: 236 LCRSGMWDKAWEVFKEMDDFGV--APDVRSFTILIGGFCRVGEIEEALKIYKEMRHRG-I 292
Query: 298 KHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVD 357
K D S++ + + R +D L EMR G + V+G F ++ +A+
Sbjct: 293 KPDLVSFSCLIGLFARRGKMDHAMAYLREMRCFGLVPDGVIYTMVIGGFCRAGLMSDALR 352
Query: 358 LYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKA 417
+ + + C P V N++L
Sbjct: 353 VRDEMVGCGCLPDV-------------------------------------VTYNTLLNG 375
Query: 418 LISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVG 477
L R+ + +L M E G + + GK D+A + D M
Sbjct: 376 LCKERRLLDAEGLLNEMRERGVPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRLRPD 435
Query: 478 DKMWVSLIKGHCVAGDLDKAADCFQKMVEKE-GTSHAGYAIDLLVNTYCSKNRAIDACKF 536
+ +LI G C GDLDKA D + M +E +H Y+I L++++C K + DA F
Sbjct: 436 IVTYNTLIDGMCRQGDLDKANDLWDDMHSREIFPNHVTYSI--LIDSHCEKGQVEDAFGF 493
Query: 537 VHNCVREYDLKPWHTTYEELIKN 559
+ + + + P TY +IK
Sbjct: 494 LDEMINK-GILPNIMTYNSIIKG 515
Score = 44.3 bits (103), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 51/207 (24%), Positives = 90/207 (43%), Gaps = 11/207 (5%)
Query: 440 IASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAAD 499
+ + N+ FR AG + A +D M + G G + S++KG C +G DKA +
Sbjct: 191 VVTHNVMVDARFR---AGDAEAAMALVDSMVSKGLKPGIVTYNSVLKGLCRSGMWDKAWE 247
Query: 500 CFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKN 559
F++M + G + + +L+ +C +A K ++ +R +KP ++ LI
Sbjct: 248 VFKEM-DDFGVAPDVRSFTILIGGFCRVGEIEEALK-IYKEMRHRGIKPDLVSFSCLI-G 304
Query: 560 LLVQRGFKD-ALSLLCLMKDHGFPP---FVDPFIKYVSKSGTSDDAIAFLKGMTS-KRFP 614
L +RG D A++ L M+ G P I ++G DA+ M P
Sbjct: 305 LFARRGKMDHAMAYLREMRCFGLVPDGVIYTMVIGGFCRAGLMSDALRVRDEMVGCGCLP 364
Query: 615 SMSVVLCLFAAFFQARRHSEAQDLLSK 641
+ L + RR +A+ LL++
Sbjct: 365 DVVTYNTLLNGLCKERRLLDAEGLLNE 391
>gi|83744088|gb|ABC42330.1| PPR protein [Oryza sativa Indica Group]
Length = 791
Score = 62.8 bits (151), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 75/363 (20%), Positives = 140/363 (38%), Gaps = 44/363 (12%)
Query: 280 EPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETC 339
+PK+A+ F + G V+ D +Y+ + L + K+ D M +G + E+ T
Sbjct: 281 QPKEAIGFLKKMRSDG-VEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKRGLKPEITTY 339
Query: 340 VKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVF 399
+L ++ + + E L + + P D +FS ++ +
Sbjct: 340 GTLLQGYATKGALVEMHGLLDLMVRNGIHP------------------DHYVFSILICAY 381
Query: 400 RENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKK 459
G V AML + M + G ++ + L +G+
Sbjct: 382 ANQGKV-DQAML------------------VFSKMRQQGLNPNAVTYGAVIGILCKSGRV 422
Query: 460 DEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDL 519
++A + + M G G+ ++ SLI G C ++A + +M+++ G +
Sbjct: 423 EDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDR-GICLNTIFFNS 481
Query: 520 LVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDH 579
+++++C + R I++ K VR +KP TY LI + +A+ LL M
Sbjct: 482 IIDSHCKEGRVIESEKLFELMVR-IGVKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSV 540
Query: 580 GFPPFV---DPFIKYVSKSGTSDDAIAFLKGMTSKRF-PSMSVVLCLFAAFFQARRHSEA 635
G P I K +DA+ K M S P + + FQ RR + A
Sbjct: 541 GLKPNTVTYSTLINGYCKISRMEDALVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAA 600
Query: 636 QDL 638
++L
Sbjct: 601 KEL 603
Score = 48.5 bits (114), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 78/350 (22%), Positives = 135/350 (38%), Gaps = 16/350 (4%)
Query: 242 CKVVRSDI----WGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFV 297
C+ R D+ G+ +++ R + F+ L DK + I R E G +
Sbjct: 98 CRAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMD--IVLRRMTELGCI 155
Query: 298 KHDESSYNAMASVLGREDCIDRFWKVLDEM---RSKGYEMEMETCVKVLGRFSERNMVKE 354
+ SYN + L E+ ++L M R G ++ + V+ F + +
Sbjct: 156 P-NVFSYNILLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYTTVINGFFKEGDSDK 214
Query: 355 AVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAML-NS 413
A Y + P V ++ + ++ +D + +V+ +NG V+ D M NS
Sbjct: 215 AYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAM--EVLNTMVKNG-VMPDCMTYNS 271
Query: 414 VLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASG 473
+L S G+ E LK M G S + L G+ EA + D M G
Sbjct: 272 ILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKRG 331
Query: 474 SDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDA 533
+ +L++G+ G L + MV + G Y +L+ Y ++ + +D
Sbjct: 332 LKPEITTYGTLLQGYATKGALVEMHGLLDLMV-RNGIHPDHYVFSILICAYANQGK-VDQ 389
Query: 534 CKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPP 583
V + +R+ L P TY +I L +DA+ M D G P
Sbjct: 390 AMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSP 439
>gi|357515141|ref|XP_003627859.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355521881|gb|AET02335.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 731
Score = 62.8 bits (151), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 89/434 (20%), Positives = 164/434 (37%), Gaps = 33/434 (7%)
Query: 230 IDNSIEKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGD---EPKKALI 286
I+ S + + +C ++ W + ++ + T ++ + V+ L EP
Sbjct: 7 IETSNKHLIESVCAIIVKGDWNNLLKPKTAS---TLTSTTIHQVILHLKQHRYEPFFIFH 63
Query: 287 FFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGY-------------- 332
FF+WA+ H S +M +L + +VLD+M +
Sbjct: 64 FFKWAQSIPHYTHSLHSSWSMIHMLTKHRHFKTAQQVLDKMAQREILSSPSVLTSLVRIH 123
Query: 333 ---EMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDM 389
E+ ++ +++ M +AV ++E C KP ++ CT L+ ++ K
Sbjct: 124 DDPEVNSHVLSWIVIHYAKSKMTHDAVQVFEQMSLCNLKPHLHACTVLMNSLL--KDGIT 181
Query: 390 RLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKI 449
+ KV + ++G V + N ++ A + IL ME G + + +
Sbjct: 182 SMVWKVYKRMVQDGVVPNIYVYNCLIHACSKSRDVERAEFILNEMEVKGVVPDIFTYNTL 241
Query: 450 AFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEG 509
G EA D ME G ++ + SLI G C G + +A F + ++
Sbjct: 242 IALYCKKGLHYEALSVQDKMEREGINLDIVSYNSLIYGFCKEGKMREAMRMFGE-IKDAI 300
Query: 510 TSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDA 569
+H Y L++ YC N +A + V + L P TY +++ L +DA
Sbjct: 301 PNHVTYTT--LIDGYCKANEFEEALRLREMMVAK-GLYPGVVTYNSILRKLCSDGRIRDA 357
Query: 570 LSLLCLMKDHGFPP---FVDPFIKYVSKSGTSDDAIAF-LKGMTSKRFPSMSVVLCLFAA 625
LL M + + I K G + A+ F K + + P+ L
Sbjct: 358 NKLLHEMSERKVQADSVTCNTLINAYCKIGDLNSALKFKTKMLEAGLTPNSFTYKALIHG 417
Query: 626 FFQARRHSEAQDLL 639
F + A++LL
Sbjct: 418 FCKTSELESAKELL 431
Score = 42.0 bits (97), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 53/117 (45%), Gaps = 1/117 (0%)
Query: 412 NSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEA 471
NS+L+ L S GR+ + NK+L M E A S + + G + A +F M
Sbjct: 342 NSILRKLCSDGRIRDANKLLHEMSERKVQADSVTCNTLINAYCKIGDLNSALKFKTKMLE 401
Query: 472 SGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKN 528
+G + +LI G C +L+ A + M++ G S +V++YC K+
Sbjct: 402 AGLTPNSFTYKALIHGFCKTSELESAKELLFGMLDA-GFSPNYRTYSWIVDSYCKKD 457
>gi|297739643|emb|CBI29825.3| unnamed protein product [Vitis vinifera]
Length = 722
Score = 62.8 bits (151), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 65/322 (20%), Positives = 133/322 (41%), Gaps = 7/322 (2%)
Query: 298 KHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVD 357
K D +YN++ V+ +++ V ++M Y T V +L + +A+
Sbjct: 163 KPDVFTYNSILHVMVQKEVFLLALAVYNQMLKLNYNPNRATFVILLNGLCKNGKTDDALK 222
Query: 358 LYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKA 417
+++ P+ T +L + +K+ D +++ + +G N++L
Sbjct: 223 MFDEMTQKGIPPNTMIYTIILSGLCQAKRTDD--VHRLLNTMKVSGCCPDSITCNALLDG 280
Query: 418 LISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVG 477
+G++ E +L+ E+ G++ S + L A + DE E+ M +G +
Sbjct: 281 FCKLGQIDEAFALLQLFEKEGYVLGIKGYSSLIDGLFRAKRYDEVQEWCRKMFKAGIEPD 340
Query: 478 DKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFV 537
++ LI+G C G +D A + M ++ G S Y + L+ +C +D + +
Sbjct: 341 VVLYTILIRGFCEVGMVDYALNMLNDMTQR-GLSPDTYCYNALIKGFCDVG-LLDKARSL 398
Query: 538 HNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPF---IKYVSK 594
+ + D P TY LI + +A + M++ G P + F I + K
Sbjct: 399 QLEISKNDCFPTSCTYTILICGMCRNGLLDEARQIFNQMENLGCSPSIMTFNALIDGLCK 458
Query: 595 SGTSDDAIAFLKGMTSKRFPSM 616
+G ++A M + PS+
Sbjct: 459 AGELEEARHLFYKMEIGKNPSL 480
Score = 58.9 bits (141), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 55/258 (21%), Positives = 117/258 (45%), Gaps = 5/258 (1%)
Query: 252 DDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVL 311
+ +E L L S+++V V+ + P+ FF W + ++N + +L
Sbjct: 49 NPMEDALEKLAPFLSSEIVNDVMRE-QRRPELGFRFFIWTTRRRSFR-SWVTHNLVIDML 106
Query: 312 GREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSV 371
++D D +WK+L+E+++ ++ T ++ +++ M ++AV+ + KP V
Sbjct: 107 AKDDGFDTYWKILEELKNSNIQIPPPTFSVLIAAYAKSGMAEKAVESFGKMKDFGCKPDV 166
Query: 372 NCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKIL 431
+L ++V K++ + + ++ + N N A +L L G+ + K+
Sbjct: 167 FTYNSILH-VMVQKEVFLLALAVYNQMLKLNYNP-NRATFVILLNGLCKNGKTDDALKMF 224
Query: 432 KAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVA 491
M + G ++ + + I L A + D+ + ++ M+ SG +L+ G C
Sbjct: 225 DEMTQKGIPPNTMIYTIILSGLCQAKRTDDVHRLLNTMKVSGCCPDSITCNALLDGFCKL 284
Query: 492 GDLDKAADCFQKMVEKEG 509
G +D+A Q + EKEG
Sbjct: 285 GQIDEAFALLQ-LFEKEG 301
>gi|302784458|ref|XP_002974001.1| hypothetical protein SELMODRAFT_100394 [Selaginella moellendorffii]
gi|300158333|gb|EFJ24956.1| hypothetical protein SELMODRAFT_100394 [Selaginella moellendorffii]
Length = 561
Score = 62.8 bits (151), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 72/317 (22%), Positives = 124/317 (39%), Gaps = 43/317 (13%)
Query: 300 DESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLY 359
+E +Y ++ L + +D+ +++LDEMR +G + V+ + +A+ +
Sbjct: 29 NEFTYGSLIHGLCKAGKLDQAYELLDEMRDRGIPPGVAVHNGVIKGLCKAGRFGDALGYF 88
Query: 360 EFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALI 419
+ K P + TF N+L DA++ S
Sbjct: 89 KTVAGTKCTPDI--ITF---------------------------NILVDALVKS------ 113
Query: 420 SVGRMGECNKILKAMEEGG-FIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGD 478
GR+ E +I ++M + + + + L GK D A E +D M +G
Sbjct: 114 --GRVEEAFQIFESMHTSSQCLPNVVTYTTVINGLCKDGKLDRAIELLDLMNETGCCPNV 171
Query: 479 KMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVH 538
+ L++G C AG DK Q+M + G + L+N C R +A + V
Sbjct: 172 ITYSVLVEGLCKAGRTDKGFTLLQEMTRR-GFQPDVIMYNTLLNGLCKSRRLDEALELVQ 230
Query: 539 NCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFV---DPFIKYVSKS 595
+R P TY L++ + A L+ +M + G PP V + I + +
Sbjct: 231 LMIRS-GCYPTVVTYNSLMELFCRSKQVDRAFRLIQVMSERGCPPDVINYNTVIAGLCRD 289
Query: 596 GTSDDAIAFLKGMTSKR 612
DDA A LK M + R
Sbjct: 290 ARLDDAQALLKQMVAAR 306
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 57/234 (24%), Positives = 97/234 (41%), Gaps = 8/234 (3%)
Query: 411 LNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHME 470
+N L L+ G+ G+ ++ + E + + + L AGK D+A E +D M
Sbjct: 1 MNCALNLLVRAGQHGQAVQLFR---EERCVPNEFTYGSLIHGLCKAGKLDQAYELLDEMR 57
Query: 471 ASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRA 530
G G + +IKG C AG A F+ + + T ++LV+ R
Sbjct: 58 DRGIPPGVAVHNGVIKGLCKAGRFGDALGYFKTVAGTKCTPDI-ITFNILVDALVKSGRV 116
Query: 531 IDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPF-- 588
+A + + P TY +I L A+ LL LM + G P V +
Sbjct: 117 EEAFQIFESMHTSSQCLPNVVTYTTVINGLCKDGKLDRAIELLDLMNETGCCPNVITYSV 176
Query: 589 -IKYVSKSGTSDDAIAFLKGMTSKRF-PSMSVVLCLFAAFFQARRHSEAQDLLS 640
++ + K+G +D L+ MT + F P + + L ++RR EA +L+
Sbjct: 177 LVEGLCKAGRTDKGFTLLQEMTRRGFQPDVIMYNTLLNGLCKSRRLDEALELVQ 230
>gi|224054827|ref|XP_002298371.1| predicted protein [Populus trichocarpa]
gi|222845629|gb|EEE83176.1| predicted protein [Populus trichocarpa]
Length = 915
Score = 62.4 bits (150), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 59/237 (24%), Positives = 93/237 (39%), Gaps = 6/237 (2%)
Query: 412 NSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEA 471
N+++ +L G+ E + K M E G A+ S + GK D A F+ M
Sbjct: 370 NALINSLCKDGKFDEAELLFKEMGEKGLCANDVTYSILIDSFCRRGKLDTAIHFLGKMIM 429
Query: 472 SGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAI 531
+G + + SLI GHC G+L A F +M++K G + L++ YC+K +
Sbjct: 430 AGIKITVYPYNSLINGHCKLGNLSAAVSFFDEMIDK-GLKPTVVSYTSLISGYCNKGKLH 488
Query: 532 DACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPP---FVDPF 588
+A + H + + P T+ LI L DA L M + P +
Sbjct: 489 EAFRLYHEMTGK-GIAPNTYTFTTLISALFRANRMTDAFRLFDEMLEQNMMPNEVTYNVM 547
Query: 589 IKYVSKSGTSDDAIAFLKGMTSKRF-PSMSVVLCLFAAFFQARRHSEAQDLLSKCPR 644
I+ K G + A L M K P L ++ R EA+ + R
Sbjct: 548 IEGHCKEGNTVKAFELLNQMVQKGLVPDTYTYRPLISSLCSTGRVCEAKKFIDDLHR 604
Score = 48.5 bits (114), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 60/304 (19%), Positives = 116/304 (38%), Gaps = 11/304 (3%)
Query: 325 DEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVS 384
DEM KG + + + ++ + + + EA LY P+ T L+ + +
Sbjct: 460 DEMIDKGLKPTVVSYTSLISGYCNKGKLHEAFRLYHEMTGKGIAPNTYTFTTLISALFRA 519
Query: 385 KQLD--MRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIAS 442
++ RLF +++ E + + N +++ G + ++L M + G +
Sbjct: 520 NRMTDAFRLFDEML----EQNMMPNEVTYNVMIEGHCKEGNTVKAFELLNQMVQKGLVPD 575
Query: 443 SNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQ 502
+ + L S G+ EA +F+D + + + + +L+ G+C G L A +
Sbjct: 576 TYTYRPLISSLCSTGRVCEAKKFIDDLHREHFKLNEMCYSALLHGYCKEGRLRDALGVCR 635
Query: 503 KMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLV 562
+MV K G +L++ + + N + + L+P Y +I
Sbjct: 636 EMV-KRGVDMDLVCYAVLIDGTIKEQDTSAVFGLLKN-MHDQRLRPDKVIYTSMIDGYSK 693
Query: 563 QRGFKDALSLLCLMKDHGFPPFVDPF---IKYVSKSGTSDDAIAFLKGMTSKRFPSMSVV 619
K A + +M D G P + + I + K+G D A K M V
Sbjct: 694 AGSVKKAFGIWDIMIDEGCTPNIVTYTTLINELCKAGLMDKAELLWKEMLVSNSTPNHVT 753
Query: 620 LCLF 623
C F
Sbjct: 754 YCCF 757
Score = 46.2 bits (108), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 45/214 (21%), Positives = 90/214 (42%), Gaps = 9/214 (4%)
Query: 297 VKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAV 356
++ D+ Y +M + + + + + D M +G + T ++ + ++ +A
Sbjct: 677 LRPDKVIYTSMIDGYSKAGSVKKAFGIWDIMIDEGCTPNIVTYTTLINELCKAGLMDKAE 736
Query: 357 DLYEFAMACKNKPS-VNCCTFLLRKIVVSKQLDMRLFSKVVRVFRE--NGNVLTDAMLNS 413
L++ + + P+ V C FL ++++ M K V++ + G + N
Sbjct: 737 LLWKEMLVSNSTPNHVTYCCFLDH---LAREGSME---KAVQLHNDMLKGLLANTVSYNI 790
Query: 414 VLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASG 473
+++ +GR+ E K+L M + S I ++ G D A EF D M G
Sbjct: 791 LVRGFCKLGRVEEATKLLDEMIDNAIFPDCITYSTIIYQCCRRGNLDGAIEFWDTMLNKG 850
Query: 474 SDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEK 507
+ LI G C+AG+L KA + M+ +
Sbjct: 851 LKPDTLAYNFLIYGCCIAGELGKAFELRDDMIRR 884
>gi|15225722|ref|NP_180822.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75160493|sp|Q8S8P6.1|PP180_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g32630
gi|20197234|gb|AAM14987.1| putative salt-inducible protein [Arabidopsis thaliana]
gi|330253613|gb|AEC08707.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 624
Score = 62.4 bits (150), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 66/295 (22%), Positives = 121/295 (41%), Gaps = 7/295 (2%)
Query: 322 KVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKI 381
K+ DEMR +G E ++ ++ + +K A L++ PS L+
Sbjct: 315 KLFDEMRERGIESDVHVYTSLISWNCRKGNMKRAFLLFDELTEKGLSPSSYTYGALIDG- 373
Query: 382 VVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIA 441
V K +M ++ + G +T + N+++ G + E + I ME+ GF A
Sbjct: 374 -VCKVGEMGAAEILMNEMQSKGVNITQVVFNTLIDGYCRKGMVDEASMIYDVMEQKGFQA 432
Query: 442 SSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCF 501
+ IA + + DEA +++ M G + + +LI +C G++++A F
Sbjct: 433 DVFTCNTIASCFNRLKRYDEAKQWLFRMMEGGVKLSTVSYTNLIDVYCKEGNVEEAKRLF 492
Query: 502 QKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLL 561
+M K G ++++ YC + + +A K N + + P TY LI
Sbjct: 493 VEMSSK-GVQPNAITYNVMIYAYCKQGKIKEARKLRAN-MEANGMDPDSYTYTSLIHGEC 550
Query: 562 VQRGFKDALSLLCLMKDHGFPPFVDPF---IKYVSKSGTSDDAIAFLKGMTSKRF 613
+ +A+ L M G + I +SK+G SD+A M K +
Sbjct: 551 IADNVDEAMRLFSEMGLKGLDQNSVTYTVMISGLSKAGKSDEAFGLYDEMKRKGY 605
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 49/229 (21%), Positives = 95/229 (41%), Gaps = 15/229 (6%)
Query: 282 KKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVK 341
K+A + F E G + +Y A+ + + + +++EM+SKG +
Sbjct: 346 KRAFLLFDELTEKG-LSPSSYTYGALIDGVCKVGEMGAAEILMNEMQSKGVNITQVVFNT 404
Query: 342 VLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFL------LRKIVVSKQLDMRLFSKV 395
++ + + MV EA +Y+ + V C + L++ +KQ R+
Sbjct: 405 LIDGYCRKGMVDEASMIYDVMEQKGFQADVFTCNTIASCFNRLKRYDEAKQWLFRMM--- 461
Query: 396 VRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSS 455
E G L+ +++ G + E ++ M G ++ + + +
Sbjct: 462 -----EGGVKLSTVSYTNLIDVYCKEGNVEEAKRLFVEMSSKGVQPNAITYNVMIYAYCK 516
Query: 456 AGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKM 504
GK EA + +MEA+G D + SLI G C+A ++D+A F +M
Sbjct: 517 QGKIKEARKLRANMEANGMDPDSYTYTSLIHGECIADNVDEAMRLFSEM 565
Score = 47.8 bits (112), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 51/261 (19%), Positives = 111/261 (42%), Gaps = 6/261 (2%)
Query: 322 KVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKI 381
+V D M KG ++ +C+ L +R + ++++ + K +V T ++ +
Sbjct: 175 RVFDYMVKKGLSIDERSCIVFLVAAKKRRRIDLCLEIFRRMVDSGVKITVYSLTIVVEGL 234
Query: 382 VVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIA 441
+++ K+++ F G N+++ A + +LK M++ G +
Sbjct: 235 CRRGEVEKS--KKLIKEFSVKGIKPEAYTYNTIINAYVKQRDFSGVEGVLKVMKKDGVVY 292
Query: 442 SSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCF 501
+ + + GK +A + D M G + ++ SLI +C G++ +A F
Sbjct: 293 NKVTYTLLMELSVKNGKMSDAEKLFDEMRERGIESDVHVYTSLISWNCRKGNMKRAFLLF 352
Query: 502 QKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLL 561
++ EK G S + Y L++ C K + A + + N ++ + + LI
Sbjct: 353 DELTEK-GLSPSSYTYGALIDGVC-KVGEMGAAEILMNEMQSKGVNITQVVFNTLIDG-Y 409
Query: 562 VQRGFKDALSLLC-LMKDHGF 581
++G D S++ +M+ GF
Sbjct: 410 CRKGMVDEASMIYDVMEQKGF 430
Score = 40.8 bits (94), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 90/388 (23%), Positives = 159/388 (40%), Gaps = 59/388 (15%)
Query: 111 FSDVNDISKQLELSGVVF---THEMVLKV-LKNLESSPDEARRFFNWVLEKESERLSSKT 166
FS V + K ++ GVV+ T+ +++++ +KN + S +A + F+ + E+ E
Sbjct: 275 FSGVEGVLKVMKKDGVVYNKVTYTLLMELSVKNGKMS--DAEKLFDEMRERGIES-DVHV 331
Query: 167 YNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRNKMTEKFEKEGLESDLEKL----- 221
Y ++ G ++ + L D + +KG +S+ + + K G E L
Sbjct: 332 YTSLISWNCRKGNMKRAFLLFDELTEKGLSPSSYTYGALIDGVCKVGEMGAAEILMNEMQ 391
Query: 222 -KGIFATGSIDNSIEKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVK-FVVDKLGD 279
KG+ T + N++ R V + + D +E++ +V N + F K D
Sbjct: 392 SKGVNITQVVFNTLIDGYCRKGMVDEASMIYDVMEQKGFQADVFTCNTIASCFNRLKRYD 451
Query: 280 EPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETC 339
E K+ L FR E G VK SY + V +E ++ ++ EM SKG + T
Sbjct: 452 EAKQWL--FRMME--GGVKLSTVSYTNLIDVYCKEGNVEEAKRLFVEMSSKGVQPNAITY 507
Query: 340 VKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLD--MRLFSKVVR 397
++ + ++ +KEA L A P T L+ ++ +D MRLFS+
Sbjct: 508 NVMIYAYCKQGKIKEARKLRANMEANGMDPDSYTYTSLIHGECIADNVDEAMRLFSE--- 564
Query: 398 VFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAG 457
MG LK +++ + + LS AG
Sbjct: 565 --------------------------MG-----LKGLDQNSVTYTVMISG-----LSKAG 588
Query: 458 KKDEANEFMDHMEASGSDVGDKMWVSLI 485
K DEA D M+ G + +K++ +LI
Sbjct: 589 KSDEAFGLYDEMKRKGYTIDNKVYTALI 616
>gi|255660948|gb|ACU25643.1| pentatricopeptide repeat-containing protein [Petrea racemosa]
Length = 484
Score = 62.4 bits (150), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 77/362 (21%), Positives = 145/362 (40%), Gaps = 44/362 (12%)
Query: 258 LRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCI 317
+R L +F ++LV V+ + + AL FFRW E S +H+ ++ + +LGR +
Sbjct: 3 IRSLVPSFDHELVYNVLHG-AKKAEHALQFFRWVERSNLFEHNRETHLKIIEILGRASKL 61
Query: 318 DRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFL 377
+ +L +M KG E + + V ++ + + +V+E+V
Sbjct: 62 NHARCILLDMPKKGLEWDEDLWVLMIDSYGKAGIVQESV--------------------- 100
Query: 378 LRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEG 437
+LF K+ E G T +++ K ++ GR + M
Sbjct: 101 ------------KLFQKM----EELGVERTIKSYDALFKVILRRGRYMMAKRYFNKMLSE 144
Query: 438 GFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKA 497
G + + + + + +GK D AN F + M++ + ++I G+ +++
Sbjct: 145 GIEPTRHTFNFMIWGFFLSGKVDTANRFFEXMKSREIMPDVITYNTMINGYYRVKKMEEX 204
Query: 498 ADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELI 557
+ F +M + L+ Y S +R DA + V ++ + + P TY L+
Sbjct: 205 ENYFMEM-KGRNIEPTVVTYTTLIKGYVSVDRIDDALRLVEE-MKGFGINPNAITYSTLL 262
Query: 558 KNLLVQRGFKDALSLLCLMKDHGFPPFVDP-FIKYVS---KSGTSDDAIAFLKGMTSKRF 613
L +A S+L M D P + F++ +S K G D A LK M
Sbjct: 263 PGLCNAEKMSEAQSILKEMVDKYIAPKDNSIFLRLISGQCKVGNLDAAADVLKVMIRLSV 322
Query: 614 PS 615
P+
Sbjct: 323 PT 324
Score = 47.8 bits (112), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 116/513 (22%), Positives = 201/513 (39%), Gaps = 111/513 (21%)
Query: 128 FTHEMVLKVLKNLESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLV 187
F HE+V VL + + + A +FF WV + +T+ ++ I+G + ++
Sbjct: 10 FDHELVYNVLHGAKKA-EHALQFFRWVERSNLFEHNRETHLKIIEILGRASKLNHARCIL 68
Query: 188 DVMKKKG--------------YGVASHVRN--KMTEKFEKEGLESDLEKLKGIFATGSID 231
M KKG YG A V+ K+ +K E+ G+E ++ +F
Sbjct: 69 LDMPKKGLEWDEDLWVLMIDSYGKAGIVQESVKLFQKMEELGVERTIKSYDALF------ 122
Query: 232 NSIEKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALI-FFRW 290
KV R + + + R N S G EP + F W
Sbjct: 123 ----KVILRRGRYMMAK----------RYFNKMLSE----------GIEPTRHTFNFMIW 158
Query: 291 AEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVL-GRFSER 349
GF + G+ D +RF+ + M+S+ ++ T ++ G + +
Sbjct: 159 ----GFF------------LSGKVDTANRFF---EXMKSREIMPDVITYNTMINGYYRVK 199
Query: 350 NMVKEAVDLYEFAMACKN-KPSVNCCTFLLRKIVVSKQLD--MRLFSKVVRVFRENGNVL 406
M E + Y M +N +P+V T L++ V ++D +RL ++ + F N N +
Sbjct: 200 KM--EEXENYFMEMKGRNIEPTVVTYTTLIKGYVSVDRIDDALRLVEEM-KGFGINPNAI 256
Query: 407 TDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSA----GKKDEA 462
T +++L L + +M E ILK M + +IA + + I RL S G D A
Sbjct: 257 T---YSTLLPGLCNAEKMSEAQSILKEMVDK-YIAPKD--NSIFLRLISGQCKVGNLDAA 310
Query: 463 NEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVN 522
+ + M + LI+ C AG D+A K++EK D+++
Sbjct: 311 ADVLKVMIRLSVPTEAGHYGVLIENCCKAGQYDRAVKFLDKVIEK----------DIILR 360
Query: 523 TYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFP 582
S + A +N + EY T E + L++ G D ++L L++ H
Sbjct: 361 PQSSLHMEPSA----YNPLIEYLCNNGQTAKAETLVRQLMKLGVLDPIALNTLIRGH--- 413
Query: 583 PFVDPFIKYVSKSGTSDDAIAFLKGMTSKRFPS 615
S+ G+ D A LK M ++ S
Sbjct: 414 ----------SQEGSPDSAFELLKIMLRRKVDS 436
>gi|449436014|ref|XP_004135789.1| PREDICTED: pentatricopeptide repeat-containing protein At1g07740,
mitochondrial-like [Cucumis sativus]
Length = 460
Score = 62.4 bits (150), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 82/374 (21%), Positives = 144/374 (38%), Gaps = 18/374 (4%)
Query: 270 VKFVVD-KLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMR 328
+ FV D K +P +AL F E GF KH SY+++ L R + +L +R
Sbjct: 50 IPFVTDVKEVKDPCEALALFENYHEKGF-KHHYPSYSSLIYKLARSRRFEAVETILGHLR 108
Query: 329 SKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLR-KIVVSKQL 387
++ V ++ + + ++V++ ++L+ PS NC L ++++ +
Sbjct: 109 NRNIRCNETLFVALIQHYGKAHLVEKGIELFH------QMPSFNCFRTLQSFNVLLNTLV 162
Query: 388 DMRLFSKVVRVFRENGNV---LTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSN 444
D FSK +F++ + N ++K I G + + M E G S
Sbjct: 163 DCDQFSKASEIFQQAYEMDFRPNSVSYNIMIKGWIKKGGWEQACNLFDEMLEKGVQPSVV 222
Query: 445 MKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKM 504
+ L G+ D A +M G + L++G C G +A M
Sbjct: 223 TYNSFLGVLCRKGEMDTALCLFKNMTEKGHHPNAVTYALLMEGWCFIGKYKEAKKLMFDM 282
Query: 505 VEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQR 564
E G +L+ T+ K ID + + N +++ LKP TY L+ L +
Sbjct: 283 -EFHGCKLRPVNYGVLM-THLGKTGNIDEMESLLNEMKKRRLKPDVVTYNILVNYLCKEG 340
Query: 565 GFKDALSLLCLMKDHGFPPFVDPF---IKYVSKSGTSDDAIAFLKGM-TSKRFPSMSVVL 620
DA +L M+ G P + I +G D A+ L M S +P +
Sbjct: 341 KVGDAYKVLVKMQVGGCDPNAATYRMMIDGYCNAGDFDGAMKILNAMLMSGHYPHLKTFA 400
Query: 621 CLFAAFFQARRHSE 634
L + + +
Sbjct: 401 SLVVGLLKGENNDD 414
Score = 40.8 bits (94), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 60/280 (21%), Positives = 106/280 (37%), Gaps = 12/280 (4%)
Query: 256 RQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGRED 315
R L+ NV L+ +VD D+ KA F+ A E F + + SYN M ++
Sbjct: 149 RTLQSFNV-----LLNTLVD--CDQFSKASEIFQQAYEMDF-RPNSVSYNIMIKGWIKKG 200
Query: 316 CIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCT 375
++ + DEM KG + + T LG + + A+ L++ + P+
Sbjct: 201 GWEQACNLFDEMLEKGVQPSVVTYNSFLGVLCRKGEMDTALCLFKNMTEKGHHPNAVTYA 260
Query: 376 FLLRK-IVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAM 434
L+ + K + + K++ +G L ++ L G + E +L M
Sbjct: 261 LLMEGWCFIGKYKEAK---KLMFDMEFHGCKLRPVNYGVLMTHLGKTGNIDEMESLLNEM 317
Query: 435 EEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDL 494
++ + + L GK +A + + M+ G D + +I G+C AGD
Sbjct: 318 KKRRLKPDVVTYNILVNYLCKEGKVGDAYKVLVKMQVGGCDPNAATYRMMIDGYCNAGDF 377
Query: 495 DKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDAC 534
D A M+ H L+V +N C
Sbjct: 378 DGAMKILNAMLMSGHYPHLKTFASLVVGLLKGENNDDYVC 417
>gi|83744086|gb|ABC42329.1| PPR protein [Oryza sativa Indica Group]
Length = 761
Score = 62.4 bits (150), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 75/357 (21%), Positives = 143/357 (40%), Gaps = 25/357 (7%)
Query: 297 VKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAV 356
+ D +Y+++ + L + +D+ +VL M G T ++ + KEA+
Sbjct: 227 ISPDVVTYSSIIAALCKGQAMDKAMEVLTSMVKNGVMPNCRTYTSIMHGYCSSGQPKEAI 286
Query: 357 DLYEFAMACKNKPS------VNCCTFLLRKIVVSKQLDMR-LFSKVVRVFRENGNVLTDA 409
+ + +P CT L + M L +VR NG
Sbjct: 287 GFLKKVRSDGVEPDGLEPDIATYCTLLQGYATKGALVGMHALLDLMVR----NGIHPDHY 342
Query: 410 MLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHM 469
+ N ++ A G++ E + M + G + + L +G+ ++A + + M
Sbjct: 343 VYNILICAYAKQGKVDEAMLVFSKMRQQGLNPDAVTYGAVIGILCKSGRVEDAMLYFEQM 402
Query: 470 EASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNR 529
G G+ ++ SLI G C ++A + +M+++ G + +++++C + R
Sbjct: 403 IDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDR-GICLNTIFFNSIIDSHCKEGR 461
Query: 530 AIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPP------ 583
I++ K VR +KP TY LI + +A+ LL M G P
Sbjct: 462 VIESEKLFDLMVR-IGVKPDIITYSTLIDGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYR 520
Query: 584 -FVDPFIKYVSKSGTSDDAIAFLKGMTSKRF-PSMSVVLCLFAAFFQARRHSEAQDL 638
++ + K +S+ G DA+ K M S P + + FQ RR + A++L
Sbjct: 521 TLINGYCK-ISRMG---DALVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKEL 573
Score = 48.9 bits (115), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 71/336 (21%), Positives = 122/336 (36%), Gaps = 12/336 (3%)
Query: 294 SGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVK 353
+G V +Y + R D +D + L + KG+ +E T +L
Sbjct: 80 AGKVTPTVHTYAILIGCCCRADRLDLGFAALGNVVKKGFRVEAITFTPLLKGLCADKRTS 139
Query: 354 EAVDLYEFAMA-CKNKPSVNCCTFLLRKIVVSKQLDMRL-FSKVVRVFRENGNVLTDAML 411
+A+D+ M P V CT LL+ + + L ++ R G+
Sbjct: 140 DAMDIVLRRMTELSCMPDVFSCTILLKGLCDENRSQEALELPHMMADGRGGGSAPDVVSY 199
Query: 412 NSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEA 471
+V+ G G+ M + S I L D+A E + M
Sbjct: 200 TTVINGFFKEGDSGKAYSTYHEMLDRRISPDVVTYSSIIAALCKGQAMDKAMEVLTSMVK 259
Query: 472 SGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDL-----LVNTYCS 526
+G + + S++ G+C +G K A F K V +G G D+ L+ Y +
Sbjct: 260 NGVMPNCRTYTSIMHGYCSSGQ-PKEAIGFLKKVRSDGVEPDGLEPDIATYCTLLQGYAT 318
Query: 527 KNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVD 586
K + + VR + P H Y LI Q +A+ + M+ G P
Sbjct: 319 KGALVGMHALLDLMVRN-GIHPDHYVYNILICAYAKQGKVDEAMLVFSKMRQQGLNPDAV 377
Query: 587 PF---IKYVSKSGTSDDAIAFLKGMTSKRFPSMSVV 619
+ I + KSG +DA+ + + M + ++V
Sbjct: 378 TYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIV 413
>gi|356540343|ref|XP_003538649.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22670,
mitochondrial-like [Glycine max]
Length = 543
Score = 62.4 bits (150), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 90/401 (22%), Positives = 165/401 (41%), Gaps = 56/401 (13%)
Query: 258 LRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCI 317
L L+ S+ LV V+++ ++ AL FF+WA+ +H N M +LG+
Sbjct: 115 LDGLSFQPSSGLVSQVLNRFSNDWVPALGFFKWAKSQTGYRHSPELCNLMVDILGKCKSF 174
Query: 318 DRFWKVLDEMR--SKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCT 375
D +++EM +GY + +ET KV+ R ++ ++A++ + +K VN T
Sbjct: 175 DPMSDLVEEMAKLEQGY-VTLETMAKVIRRLAKARKHEDAIEAFRRM----DKFGVNKDT 229
Query: 376 FLLRKIV--VSKQLDMRLFSKVVRVFR-------ENGNVLTDAM-----LNSVLKALISV 421
L ++ + K + KVV F+ + NVL ++ KA+ +
Sbjct: 230 AALNVLIDALVKGDSVEHAHKVVLEFKGLIPLSSHSFNVLMHGWCRARKFDNARKAMEDM 289
Query: 422 GRMG----------------------ECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKK 459
+G + +++L+ M E G ++ + + L AG+
Sbjct: 290 KELGFEPDVFSYTSFIEAYCHERDFRKVDQVLEEMRENGCPPNAVTYTTVMLHLGKAGQL 349
Query: 460 DEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDL 519
+A E + M+ G ++ +I AG L A D F+ M K+G +
Sbjct: 350 SKALEVYEKMKCDGCVADTPVYSCMIFILGKAGRLKDACDVFEDM-PKQGVVRDVVTYNT 408
Query: 520 LVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDH 579
+++T C+ +R A + + + + KP TY LL K + +L + DH
Sbjct: 409 MISTACAHSREETALRLLKE-MEDGSCKPNVGTYHP----LLKMCCKKKRMKVLKFLLDH 463
Query: 580 GFPPFVDP-------FIKYVSKSGTSDDAIAFLKGMTSKRF 613
F + P + + K+G DA +FL+ M K F
Sbjct: 464 MFKNDISPDLATYSLLVNALCKTGKVADAYSFLEEMVLKGF 504
Score = 44.3 bits (103), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 94/468 (20%), Positives = 166/468 (35%), Gaps = 79/468 (16%)
Query: 121 LELSGVVF--THEMVLKVLKNLESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVGVHG 178
L L G+ F + +V +VL + A FF W + R S + NLM+ I+G
Sbjct: 113 LALDGLSFQPSSGLVSQVLNRFSNDWVPALGFFKWAKSQTGYRHSPELCNLMVDILGKCK 172
Query: 179 LVQEFWGLVDVMKK--KGYGVASHVRNKMTEKFEKEGLESDLEKLKGIFATGSIDN-SIE 235
LV+ M K +GY V K+ + K D I A +D +
Sbjct: 173 SFDPMSDLVEEMAKLEQGY-VTLETMAKVIRRLAKARKHED-----AIEAFRRMDKFGVN 226
Query: 236 KVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESG 295
K + + ++ + + GD VE K ++ F+ G
Sbjct: 227 KDTAALNVLIDALVKGDSVEHA------------------------HKVVLEFK-----G 257
Query: 296 FVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEA 355
+ S+N + R D K +++M+ G+E ++ FS + ++
Sbjct: 258 LIPLSSHSFNVLMHGWCRARKFDNARKAMEDMKELGFEPDV---------FSYTSFIE-- 306
Query: 356 VDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVL 415
+ D R +V+ RENG +V+
Sbjct: 307 --------------------------AYCHERDFRKVDQVLEEMRENGCPPNAVTYTTVM 340
Query: 416 KALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSD 475
L G++ + ++ + M+ G +A + + S + F L AG+ +A + + M G
Sbjct: 341 LHLGKAGQLSKALEVYEKMKCDGCVADTPVYSCMIFILGKAGRLKDACDVFEDMPKQGVV 400
Query: 476 VGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACK 535
+ ++I C + A ++M + + G LL K + K
Sbjct: 401 RDVVTYNTMISTACAHSREETALRLLKEMEDGSCKPNVGTYHPLLKMCCKKKRMKV--LK 458
Query: 536 FVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPP 583
F+ + + + D+ P TY L+ L DA S L M GF P
Sbjct: 459 FLLDHMFKNDISPDLATYSLLVNALCKTGKVADAYSFLEEMVLKGFTP 506
>gi|302803484|ref|XP_002983495.1| hypothetical protein SELMODRAFT_118272 [Selaginella moellendorffii]
gi|300148738|gb|EFJ15396.1| hypothetical protein SELMODRAFT_118272 [Selaginella moellendorffii]
Length = 561
Score = 62.4 bits (150), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 72/317 (22%), Positives = 124/317 (39%), Gaps = 43/317 (13%)
Query: 300 DESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLY 359
+E +Y ++ L + +D+ +++LDEMR +G + V+ + +A+ +
Sbjct: 29 NEFTYGSLIHGLCKAGKLDQAYELLDEMRDRGIPPGVAVHNGVIRGLCKAGRFGDALGYF 88
Query: 360 EFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALI 419
+ K P + TF N+L DA++ S
Sbjct: 89 KTVAGTKCTPDI--ITF---------------------------NILVDALVKS------ 113
Query: 420 SVGRMGECNKILKAMEEGG-FIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGD 478
GR+ E +I ++M + + + + L GK D A E +D M +G
Sbjct: 114 --GRVEEAFQIFESMHTSSQCLPNVVTYTTVINGLCKDGKLDRAIELLDLMNETGCCPNV 171
Query: 479 KMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVH 538
+ L++G C AG DK Q+M + G + L+N C R +A + V
Sbjct: 172 ITYSVLVEGLCKAGRTDKGFTLLQEMTRR-GFQPDVIMYNTLLNGLCKSRRLDEALELVQ 230
Query: 539 NCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFV---DPFIKYVSKS 595
+R P TY L++ + A L+ +M + G PP V + I + +
Sbjct: 231 LMIRS-GCYPTVVTYNSLMELFCRSKQVDRAFRLIQVMSERGCPPDVINYNTVIAGLCRD 289
Query: 596 GTSDDAIAFLKGMTSKR 612
DDA A LK M + R
Sbjct: 290 ARLDDAQALLKQMVAAR 306
Score = 60.5 bits (145), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 56/234 (23%), Positives = 97/234 (41%), Gaps = 8/234 (3%)
Query: 411 LNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHME 470
+N L L+ G+ G+ ++ + E + + + L AGK D+A E +D M
Sbjct: 1 MNCALNLLVRAGQHGQAVQLFR---EERCVPNEFTYGSLIHGLCKAGKLDQAYELLDEMR 57
Query: 471 ASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRA 530
G G + +I+G C AG A F+ + + T ++LV+ R
Sbjct: 58 DRGIPPGVAVHNGVIRGLCKAGRFGDALGYFKTVAGTKCTPDI-ITFNILVDALVKSGRV 116
Query: 531 IDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPF-- 588
+A + + P TY +I L A+ LL LM + G P V +
Sbjct: 117 EEAFQIFESMHTSSQCLPNVVTYTTVINGLCKDGKLDRAIELLDLMNETGCCPNVITYSV 176
Query: 589 -IKYVSKSGTSDDAIAFLKGMTSKRF-PSMSVVLCLFAAFFQARRHSEAQDLLS 640
++ + K+G +D L+ MT + F P + + L ++RR EA +L+
Sbjct: 177 LVEGLCKAGRTDKGFTLLQEMTRRGFQPDVIMYNTLLNGLCKSRRLDEALELVQ 230
>gi|413938637|gb|AFW73188.1| hypothetical protein ZEAMMB73_055137 [Zea mays]
Length = 1115
Score = 62.4 bits (150), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 86/409 (21%), Positives = 160/409 (39%), Gaps = 19/409 (4%)
Query: 241 ICKVVRS-DIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKH 299
IC+++ S D WG ++ L +V FS LV ++ + AL FF W +
Sbjct: 702 ICQILSSSDDWGS-TQQALETRSVHFSPSLVDAILKRCKRNSCAALQFFSWVCRRPYYMP 760
Query: 300 DESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLY 359
+YN + G W + EM G ++T ++ ++ + ++A++ +
Sbjct: 761 STKTYNTAMKLAGSAKDFKHMWYLYREMLRTGCSPTVDTWNVMVCQYGNAGLSEKALNTF 820
Query: 360 EFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRE---NGNVLTDAMLNSVLK 416
C P L I+ + R V +F+E G++ +L L
Sbjct: 821 WDMKKCGFLPDKTTYNHL---IMYLTHIKGRKIDVAVTIFQEMCHAGHIPDKRILFMYLL 877
Query: 417 ALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDV 476
AL ++ + + ++ E GF + + S L A + +EA D +E G
Sbjct: 878 ALCECRKIEDATSSVVSLCELGFSVQA-VYSIFLRSLCRADRMEEALHLFDCIEKHGCSR 936
Query: 477 GDKMWVSLIKGHCVAGDLDKAADCFQKMVE--KEGTSHAGYAIDLLVNTYCSKNRAIDAC 534
M+ SLI V DK + K++E EG + + + Y K + A
Sbjct: 937 DQYMYGSLIH---VLLRRDKFEEAVAKLMEMKNEGILQSAHIYTSFIVYYFQKRDVVKAL 993
Query: 535 KFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPFIKYVS- 593
+ ++E +P T+ LI+ + +A + MK G P + + ++S
Sbjct: 994 DVLRE-MKENGCEPTVVTFSALIRGYMAMDMVSEAWDVFQQMKLKGPAPDFETYSMFMSC 1052
Query: 594 --KSGTSDDAIAFLKGMTSKRF-PSMSVVLCLFAAFFQARRHSEAQDLL 639
K+G S+D + + M+ F PS + + +H A+ +L
Sbjct: 1053 LCKAGRSEDGLHLIHDMSDCGFIPSTVNFMTVVHGLNVEGKHELAESVL 1101
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 77/377 (20%), Positives = 157/377 (41%), Gaps = 20/377 (5%)
Query: 223 GIFATGSIDNSIEKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPK 282
G+ +DN I + RI ++RS+ G VE++L L ++ +LV V+ + +
Sbjct: 170 GMTVDSDVDN-ISAMVHRITGILRSEAPGPPVEQKLESLGANYTPNLVNMVLKRCFKVRQ 228
Query: 283 KALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKV 342
FF WA+ H +YN M ++G +++ M + +++T +
Sbjct: 229 LGFWFFHWAKRLPDFHHTTETYNTMLYIVGEARSFGIMEELVGAMDREMCSKDIKTWTIL 288
Query: 343 LGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIV--VSKQLDMRLFSKVVRVFR 400
L + + + + + +E A + S+ + + R ++ + L + +
Sbjct: 289 LSSYGKTRQIGKMLSTFE---AMRKSESIWIDSKVYRTVLHALCNADKPELALEFYKDMP 345
Query: 401 ENGNVLTDAMLNSVLKALISVGRMGECNKILK-AMEEGGFIASSNMKSKIAFRLSSAGKK 459
N V TD +L +++ L + E +++ M EG ++ AGK
Sbjct: 346 SNMEVRTD-ILRLLMRCLATSDNTIEGVYLIRDDMIEGMKHPEEYCYTEALQSFCIAGKF 404
Query: 460 DEANEFMDHME----ASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGY 515
EA + M+ A+ S + + L++G C AG +D+A + M G + +
Sbjct: 405 GEAWKVFQKMKNKLLANSSALEN-----LLRGLCRAGRMDEALQVTEYMKRTSGLNSTMF 459
Query: 516 AIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCL 575
+ L+N Y K I+A + +REY P ++Y +++++L ++A L
Sbjct: 460 S--FLINGYLRKGEHINALDLLRE-MREYGCVPLASSYTQVMQHLFATDQCEEACGLFEE 516
Query: 576 MKDHGFPPFVDPFIKYV 592
M + P + F +
Sbjct: 517 MLKNRVEPDIVTFTALI 533
Score = 50.1 bits (118), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 92/450 (20%), Positives = 181/450 (40%), Gaps = 49/450 (10%)
Query: 117 ISKQLELSGVVFTHEMVLKVLKNLESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVGV 176
+ ++LE G +T +V VLK FF+W +++TYN ML IVG
Sbjct: 200 VEQKLESLGANYTPNLVNMVLKRCFKVRQLGFWFFHWAKRLPDFHHTTETYNTMLYIVG- 258
Query: 177 HGLVQEFWGLVDVMKKKGYGVASHVRNKMTEKFEKEGLESDLEKLKGIFATGSIDNSIEK 236
+ + +G+ + M ++E D++ + ++ I K
Sbjct: 259 --------------EARSFGIMEELVGAM----DREMCSKDIKTWTILLSSYGKTRQIGK 300
Query: 237 VASRICKVVRSD-IWGDDVERQLRDLNVTFSNDLVKFVVDKL--GDEPKKALIFFRWAEE 293
+ S + +S+ IW D + + + V+ L D+P+ AL F++
Sbjct: 301 MLSTFEAMRKSESIWID--------------SKVYRTVLHALCNADKPELALEFYKDMPS 346
Query: 294 SGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETC-VKVLGRFSERNMV 352
+ V+ D M + ++ I+ + + D+M +G + E C + L F
Sbjct: 347 NMEVRTDILRL-LMRCLATSDNTIEGVYLIRDDM-IEGMKHPEEYCYTEALQSFCIAGKF 404
Query: 353 KEAVDLYEFAMACKNKPSVNCCTF--LLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAM 410
EA +++ KNK N LLR + + ++D L V + + + L M
Sbjct: 405 GEAWKVFQ---KMKNKLLANSSALENLLRGLCRAGRMDEAL---QVTEYMKRTSGLNSTM 458
Query: 411 LNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHME 470
+ ++ + G +L+ M E G + ++ +++ L + + +EA + M
Sbjct: 459 FSFLINGYLRKGEHINALDLLREMREYGCVPLASSYTQVMQHLFATDQCEEACGLFEEML 518
Query: 471 ASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRA 530
+ + + +LI G+ +G + KA D F+ + K A + + C +R
Sbjct: 519 KNRVEPDIVTFTALIGGYVRSGHISKAWDVFRN-INKNVQKPTLKAYTVFMRELCKVSRP 577
Query: 531 IDACKFVHNCVREYDLKPWHTTYEELIKNL 560
++A + + EYD +P T+ LI L
Sbjct: 578 LEAVVLLKEML-EYDFRPSERTFCWLISAL 606
Score = 47.0 bits (110), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 30/128 (23%), Positives = 52/128 (40%)
Query: 87 SYSSEPAMEQKESDFTVVSDIFYKFSDVNDISKQLELSGVVFTHEMVLKVLKNLESSPDE 146
++ E + + D + I D + LE V F+ +V +LK + +
Sbjct: 685 THQKEQEQDYSDGDVEEICQILSSSDDWGSTQQALETRSVHFSPSLVDAILKRCKRNSCA 744
Query: 147 ARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRNKMT 206
A +FF+WV + S+KTYN +++ G + W L M + G N M
Sbjct: 745 ALQFFSWVCRRPYYMPSTKTYNTAMKLAGSAKDFKHMWYLYREMLRTGCSPTVDTWNVMV 804
Query: 207 EKFEKEGL 214
++ GL
Sbjct: 805 CQYGNAGL 812
>gi|255580124|ref|XP_002530894.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223529547|gb|EEF31500.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 519
Score = 62.4 bits (150), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 84/402 (20%), Positives = 156/402 (38%), Gaps = 39/402 (9%)
Query: 253 DVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLG 312
D+E L + S LV+ V+ + + A FF WA+ H + SY+ + +LG
Sbjct: 60 DLELSLTTYSSHISTTLVEQVLKRCKNLGFSAQRFFLWAKRIPGFDHSKESYHILVDILG 119
Query: 313 REDCIDRFWKVLDEMR-SKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSV 371
W L E+R S+ +E+ + V +S N+ +A+ ++ + KP++
Sbjct: 120 SSKQFALLWDFLIEIRESQDFEISPQVFWLVFRAYSRANLPSDAIRAFDRMVEFGLKPTI 179
Query: 372 NCCTFLLRKIVVSK----------------QLDMRLFSKVVR-------------VF--- 399
+ LL + K Q + +S +VR VF
Sbjct: 180 DDLDQLLYVLCKRKHAKHAQQIFDRVKHQFQTRAKTYSILVRGWGDIGESVSACKVFDEM 239
Query: 400 RENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKK 459
RE + NS+L+A G++ E K+ + M G + S A
Sbjct: 240 REQQCAVDVLAYNSLLEAFCKGGKVSEAYKMFREMGSNGIKPDACTFSIFIRAYCEANDI 299
Query: 460 DEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDL 519
A +D M+ + +IK C +++A +++E+ G A ++ +
Sbjct: 300 HLAYRVLDEMKRYDLVPNVFTYNCMIKKLCKKEKVEEAYQLLNEIIERSGQPDA-WSYNA 358
Query: 520 LVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDH 579
++ +C + A + + V++ L H +Y L+K L+ F A+ + M +
Sbjct: 359 ILAYHCEHSEVNSATRLISRMVKDNCLPDKH-SYNMLLKLLIRVGRFDRAIEVWESMGEK 417
Query: 580 GFPPFVDPFIKYV----SKSGTSDDAIAFLKGMTSKRFPSMS 617
GF P V + V K G ++A + + M + P S
Sbjct: 418 GFYPSVSTYSVMVHGLCKKKGKLEEACKYFEMMIDEGIPPYS 459
Score = 49.3 bits (116), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 92/426 (21%), Positives = 172/426 (40%), Gaps = 69/426 (16%)
Query: 103 VVSDIFYKFSDVNDISKQLELSGVVFTH-------EMVLKVLKNLESSPDEARRFFNWVL 155
+V++I SD + LELS ++ E VLK KNL S A+RFF W
Sbjct: 43 LVNEISRILSDHRNPHHDLELSLTTYSSHISTTLVEQVLKRCKNLGFS---AQRFFLWAK 99
Query: 156 EKESERLSSKTYNLMLRIVGVHGLVQEFWG-LVDVMKKKGYGVASHVRNKMTEKFEKEGL 214
S ++Y++++ I+G W L+++ + + + ++ V + + + L
Sbjct: 100 RIPGFDHSKESYHILVDILGSSKQFALLWDFLIEIRESQDFEISPQVFWLVFRAYSRANL 159
Query: 215 ESD----LEKLKGIFATGSIDNSIEKVASRICK--------------------------- 243
SD +++ +ID+ ++++ +CK
Sbjct: 160 PSDAIRAFDRMVEFGLKPTIDD-LDQLLYVLCKRKHAKHAQQIFDRVKHQFQTRAKTYSI 218
Query: 244 VVRSDIWG------------DDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWA 291
+VR WG D++ Q ++V N L++ G + +A FR
Sbjct: 219 LVRG--WGDIGESVSACKVFDEMREQQCAVDVLAYNSLLEAFCK--GGKVSEAYKMFREM 274
Query: 292 EESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNM 351
+G +K D +++ + I ++VLDEM+ + T ++ + ++
Sbjct: 275 GSNG-IKPDACTFSIFIRAYCEANDIHLAYRVLDEMKRYDLVPNVFTYNCMIKKLCKKEK 333
Query: 352 VKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLD--MRLFSKVVRVFRENGNVLTDA 409
V+EA L + +P +L +++ RL S++V+ N L D
Sbjct: 334 VEEAYQLLNEIIERSGQPDAWSYNAILAYHCEHSEVNSATRLISRMVK-----DNCLPDK 388
Query: 410 M-LNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRL-SSAGKKDEANEFMD 467
N +LK LI VGR ++ ++M E GF S + S + L GK +EA ++ +
Sbjct: 389 HSYNMLLKLLIRVGRFDRAIEVWESMGEKGFYPSVSTYSVMVHGLCKKKGKLEEACKYFE 448
Query: 468 HMEASG 473
M G
Sbjct: 449 MMIDEG 454
>gi|115450929|ref|NP_001049065.1| Os03g0165100 [Oryza sativa Japonica Group]
gi|113547536|dbj|BAF10979.1| Os03g0165100 [Oryza sativa Japonica Group]
Length = 695
Score = 62.4 bits (150), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 72/342 (21%), Positives = 136/342 (39%), Gaps = 8/342 (2%)
Query: 303 SYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFA 362
+YN++ L R D+ W+V EM G ++ + ++G F ++EA+ +Y+
Sbjct: 167 TYNSVLKGLCRSGMWDKAWEVFKEMDDFGVAPDVRSFTILIGGFCRVGEIEEALKIYKEM 226
Query: 363 MACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVG 422
KP + + L+ ++D + +R R G V + V+ G
Sbjct: 227 RHRGIKPDLVSFSCLIGLFARRGKMDHAM--AYLREMRCFGLVPDGVIYTMVIGGFCRAG 284
Query: 423 RMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWV 482
M + ++ M G + + + L + +A ++ M G +
Sbjct: 285 LMSDALRVRDEMVGCGCLPDVVTYNTLLNGLCKERRLLDAEGLLNEMRERGVPPDLCTFT 344
Query: 483 SLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVR 542
+LI G+C+ G LDKA F M+ + + L++ C + +D + + +
Sbjct: 345 TLIHGYCIEGKLDKALQLFDTMLNQRLRPDI-VTYNTLIDGMCRQG-DLDKANDLWDDMH 402
Query: 543 EYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFV---DPFIKYVSKSGTSD 599
++ P H TY LI + + +DA L M + G P + + IK +SG
Sbjct: 403 SREIFPNHVTYSILIDSHCEKGQVEDAFGFLDEMINKGILPNIMTYNSIIKGYCRSGNVS 462
Query: 600 DAIAFL-KGMTSKRFPSMSVVLCLFAAFFQARRHSEAQDLLS 640
FL K M +K P + L + + + +A LL+
Sbjct: 463 KGQKFLQKMMVNKVSPDLITYNTLIHGYIKEDKMHDAFKLLN 504
Score = 55.5 bits (132), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 72/323 (22%), Positives = 124/323 (38%), Gaps = 50/323 (15%)
Query: 244 VVRSDIWGD--DVERQLRDLNVTFSNDLVKFVVDKLG----DEPKKALIFFRWAEESGFV 297
+ RS +W +V +++ D V + D+ F + G E ++AL ++ G +
Sbjct: 175 LCRSGMWDKAWEVFKEMDDFGV--APDVRSFTILIGGFCRVGEIEEALKIYKEMRHRG-I 231
Query: 298 KHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVD 357
K D S++ + + R +D L EMR G + V+G F ++ +A+
Sbjct: 232 KPDLVSFSCLIGLFARRGKMDHAMAYLREMRCFGLVPDGVIYTMVIGGFCRAGLMSDALR 291
Query: 358 LYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKA 417
+ + + C P V N++L
Sbjct: 292 VRDEMVGCGCLPDV-------------------------------------VTYNTLLNG 314
Query: 418 LISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVG 477
L R+ + +L M E G + + GK D+A + D M
Sbjct: 315 LCKERRLLDAEGLLNEMRERGVPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRLRPD 374
Query: 478 DKMWVSLIKGHCVAGDLDKAADCFQKMVEKE-GTSHAGYAIDLLVNTYCSKNRAIDACKF 536
+ +LI G C GDLDKA D + M +E +H Y+I L++++C K + DA F
Sbjct: 375 IVTYNTLIDGMCRQGDLDKANDLWDDMHSREIFPNHVTYSI--LIDSHCEKGQVEDAFGF 432
Query: 537 VHNCVREYDLKPWHTTYEELIKN 559
+ + + L P TY +IK
Sbjct: 433 LDEMINKGIL-PNIMTYNSIIKG 454
Score = 44.3 bits (103), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 51/207 (24%), Positives = 90/207 (43%), Gaps = 11/207 (5%)
Query: 440 IASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAAD 499
+ + N+ FR AG + A +D M + G G + S++KG C +G DKA +
Sbjct: 130 VVTHNVMVDARFR---AGDAEAAMALVDSMVSKGLKPGIVTYNSVLKGLCRSGMWDKAWE 186
Query: 500 CFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKN 559
F++M + G + + +L+ +C +A K ++ +R +KP ++ LI
Sbjct: 187 VFKEM-DDFGVAPDVRSFTILIGGFCRVGEIEEALK-IYKEMRHRGIKPDLVSFSCLI-G 243
Query: 560 LLVQRGFKD-ALSLLCLMKDHGFPP---FVDPFIKYVSKSGTSDDAIAFLKGMTS-KRFP 614
L +RG D A++ L M+ G P I ++G DA+ M P
Sbjct: 244 LFARRGKMDHAMAYLREMRCFGLVPDGVIYTMVIGGFCRAGLMSDALRVRDEMVGCGCLP 303
Query: 615 SMSVVLCLFAAFFQARRHSEAQDLLSK 641
+ L + RR +A+ LL++
Sbjct: 304 DVVTYNTLLNGLCKERRLLDAEGLLNE 330
>gi|449444522|ref|XP_004140023.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g79540-like [Cucumis sativus]
Length = 783
Score = 62.4 bits (150), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 74/336 (22%), Positives = 146/336 (43%), Gaps = 14/336 (4%)
Query: 273 VVDKLGDEPKKALIF--FRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSK 330
+ L ++P L F F W+ +S ++ + + + L +E+ + +WKVL E+++
Sbjct: 64 ITSVLQEQPDTRLGFRLFIWSLKSWHLRC-RTVQDLIIGKLIKENAFELYWKVLQELKNS 122
Query: 331 GYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQ--LD 388
++ E ++ +SE M ++AV+ + KP + +L +V + L
Sbjct: 123 AIKISSEAFSVLIEAYSEAGMDEKAVESFGLMRDFDCKPDLFAFNLILHFLVRKEAFLLA 182
Query: 389 MRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSK 448
+ +++++++ N +V+T +L + L + + + M + G + + + S
Sbjct: 183 LAVYNQMLKC-NLNPDVVTYGIL---IHGLCKTCKTQDALVLFDEMTDRGILPNQIIYSI 238
Query: 449 IAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKE 508
+ L A K +A M ASG + + L+ G C +G LD A Q ++ K+
Sbjct: 239 VLSGLCQAKKIFDAQRLFSKMRASGCNRDLITYNVLLNGFCKSGYLDDAFTLLQ-LLTKD 297
Query: 509 GTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKD 568
G L+N R +A + +RE ++KP Y +I+ L + +
Sbjct: 298 GHILGVIGYGCLINGLFRARRYEEAHMWYQKMLRE-NIKPDVMLYTIMIRGLSQEGRVTE 356
Query: 569 ALSLLCLMKDHGFPP---FVDPFIKYVSKSGTSDDA 601
AL+LL M + G P + IK G D+A
Sbjct: 357 ALTLLGEMTERGLRPDTICYNALIKGFCDMGYLDEA 392
>gi|225441858|ref|XP_002278530.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g79540-like [Vitis vinifera]
Length = 798
Score = 62.4 bits (150), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 65/322 (20%), Positives = 133/322 (41%), Gaps = 7/322 (2%)
Query: 298 KHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVD 357
K D +YN++ V+ +++ V ++M Y T V +L + +A+
Sbjct: 163 KPDVFTYNSILHVMVQKEVFLLALAVYNQMLKLNYNPNRATFVILLNGLCKNGKTDDALK 222
Query: 358 LYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKA 417
+++ P+ T +L + +K+ D +++ + +G N++L
Sbjct: 223 MFDEMTQKGIPPNTMIYTIILSGLCQAKRTDD--VHRLLNTMKVSGCCPDSITCNALLDG 280
Query: 418 LISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVG 477
+G++ E +L+ E+ G++ S + L A + DE E+ M +G +
Sbjct: 281 FCKLGQIDEAFALLQLFEKEGYVLGIKGYSSLIDGLFRAKRYDEVQEWCRKMFKAGIEPD 340
Query: 478 DKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFV 537
++ LI+G C G +D A + M ++ G S Y + L+ +C +D + +
Sbjct: 341 VVLYTILIRGFCEVGMVDYALNMLNDMTQR-GLSPDTYCYNALIKGFCDVG-LLDKARSL 398
Query: 538 HNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPF---IKYVSK 594
+ + D P TY LI + +A + M++ G P + F I + K
Sbjct: 399 QLEISKNDCFPTSCTYTILICGMCRNGLLDEARQIFNQMENLGCSPSIMTFNALIDGLCK 458
Query: 595 SGTSDDAIAFLKGMTSKRFPSM 616
+G ++A M + PS+
Sbjct: 459 AGELEEARHLFYKMEIGKNPSL 480
Score = 58.5 bits (140), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 55/258 (21%), Positives = 117/258 (45%), Gaps = 5/258 (1%)
Query: 252 DDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVL 311
+ +E L L S+++V V+ + P+ FF W + ++N + +L
Sbjct: 49 NPMEDALEKLAPFLSSEIVNDVMRE-QRRPELGFRFFIWTTRRRSFR-SWVTHNLVIDML 106
Query: 312 GREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSV 371
++D D +WK+L+E+++ ++ T ++ +++ M ++AV+ + KP V
Sbjct: 107 AKDDGFDTYWKILEELKNSNIQIPPPTFSVLIAAYAKSGMAEKAVESFGKMKDFGCKPDV 166
Query: 372 NCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKIL 431
+L ++V K++ + + ++ + N N A +L L G+ + K+
Sbjct: 167 FTYNSILH-VMVQKEVFLLALAVYNQMLKLNYNP-NRATFVILLNGLCKNGKTDDALKMF 224
Query: 432 KAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVA 491
M + G ++ + + I L A + D+ + ++ M+ SG +L+ G C
Sbjct: 225 DEMTQKGIPPNTMIYTIILSGLCQAKRTDDVHRLLNTMKVSGCCPDSITCNALLDGFCKL 284
Query: 492 GDLDKAADCFQKMVEKEG 509
G +D+A Q + EKEG
Sbjct: 285 GQIDEAFALLQ-LFEKEG 301
>gi|302809589|ref|XP_002986487.1| hypothetical protein SELMODRAFT_182414 [Selaginella moellendorffii]
gi|300145670|gb|EFJ12344.1| hypothetical protein SELMODRAFT_182414 [Selaginella moellendorffii]
Length = 773
Score = 62.4 bits (150), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 72/358 (20%), Positives = 147/358 (41%), Gaps = 9/358 (2%)
Query: 283 KALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKV 342
+AL F++ + + K E Y M ++GRE +++ ++ ++M + + +
Sbjct: 64 RALRLFKYMQRQQWCKPTEHIYTIMIGIMGREGLLEKCSEIFEDMPENDVKWNVYAFTAL 123
Query: 343 LGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQ-LDMRLFSKVVRVFRE 401
+ + RN EA L+ A K + N T+ SK LD + R
Sbjct: 124 INAYG-RNGQYEA-SLHLLARMKKERVEPNLITYNTVLNACSKGGLDWEGLLNLFAQMRH 181
Query: 402 NGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDE 461
G N++L A S G + + + K M E G +A + + + + +
Sbjct: 182 EGIQPDLITYNTLLSACSSRGLVEQAAMVFKTMNESGVVADAVTYKSLVDTFAGSNQLGR 241
Query: 462 ANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLV 521
E + ME G+ + SLI+ + AG++ AA F++M ++ G + L+
Sbjct: 242 VEELLREMEDEGNSPDIAGYNSLIEAYADAGNVHGAAGVFKQM-QRGGCAPDVETYSTLL 300
Query: 522 NTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGF 581
Y ++ + + + + ++E P TY LI+ F+++++L M D G
Sbjct: 301 RIYGNQG-CFEQVRSLFSDMKELSTPPTVATYNSLIQVFGEGGYFQESINLFHDMVDSGV 359
Query: 582 PP---FVDPFIKYVSKSGTSDDAIAFLKGM-TSKRFPSMSVVLCLFAAFFQARRHSEA 635
P + + G + +A + M T++ PS+ L +++ + + +A
Sbjct: 360 KPDDATYSALLSVCGRGGLTREAAKIHQHMLTNESTPSLEASAGLISSYGKMAMYKDA 417
Score = 46.6 bits (109), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 48/235 (20%), Positives = 99/235 (42%), Gaps = 11/235 (4%)
Query: 302 SSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEF 361
++YN++ V G + +M G + + T +L + +EA +++
Sbjct: 329 ATYNSLIQVFGEGGYFQESINLFHDMVDSGVKPDDATYSALLSVCGRGGLTREAAKIHQH 388
Query: 362 AMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVF---RENGNVLTDAMLNSVLKAL 418
+ ++ PS+ L +S M ++ + + RE G + +++++
Sbjct: 389 MLTNESTPSLEASAGL-----ISSYGKMAMYKDALVSYYRIREAGLDPQVSAYDALIQGY 443
Query: 419 ISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEA-SGSDVG 477
G E L AM + GF A + + + S G DEA EF ++ GS+V
Sbjct: 444 AKGGLYVEAGSTLYAMNKAGFQAPVSSVNSVMEAYSKVGLHDEALEFFSELQQKEGSEVD 503
Query: 478 DKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAID 532
++ +L+ +C G L++A + F ++ KE + G + L+ + C + D
Sbjct: 504 ERTHETLLGVYCDMGLLEEAKEEF--VIIKETSKVPGARVYCLLLSLCVRRSKWD 556
Score = 46.6 bits (109), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 100/495 (20%), Positives = 188/495 (37%), Gaps = 92/495 (18%)
Query: 147 ARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQE-------------------FWGLV 187
A R F ++ ++ + + Y +M+ I+G GL+++ F L+
Sbjct: 65 ALRLFKYMQRQQWCKPTEHIYTIMIGIMGREGLLEKCSEIFEDMPENDVKWNVYAFTALI 124
Query: 188 DVMKKKG-YGVASHVRNKMTEKFEKEGLESDLEKLKGIF---ATGSIDNSIEKVASRICK 243
+ + G Y + H+ +M +KE +E +L + + G +D E + + +
Sbjct: 125 NAYGRNGQYEASLHLLARM----KKERVEPNLITYNTVLNACSKGGLD--WEGLLNLFAQ 178
Query: 244 VVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESS 303
+ I D + L+ S LV+ +A + F+ ESG V D +
Sbjct: 179 MRHEGIQPDLITYNTL-LSACSSRGLVE-----------QAAMVFKTMNESGVVA-DAVT 225
Query: 304 YNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAM 363
Y ++ + + R ++L EM +G ++ ++ +++ V A ++
Sbjct: 226 YKSLVDTFAGSNQLGRVEELLREMEDEGNSPDIAGYNSLIEAYADAGNVHGAAGVF---- 281
Query: 364 ACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGR 423
K C D+ +S ++R++ G L S +K L +
Sbjct: 282 --KQMQRGGCAP------------DVETYSTLLRIYGNQGCFEQVRSLFSDMKELSTPPT 327
Query: 424 MGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVS 483
+ N +++ EGG+ ++ N F D M SG D + +
Sbjct: 328 VATYNSLIQVFGEGGYF------------------QESINLFHD-MVDSGVKPDDATYSA 368
Query: 484 LIKGHCVAGDLDKAADCFQKMVEKEGT----SHAGYAIDLLVNTYCSKNRAIDACKFVHN 539
L+ G +AA Q M+ E T + AG L+++Y DA +
Sbjct: 369 LLSVCGRGGLTREAAKIHQHMLTNESTPSLEASAG-----LISSYGKMAMYKDALVSYYR 423
Query: 540 CVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGF-PPF--VDPFIKYVSKSG 596
+RE L P + Y+ LI+ + +A S L M GF P V+ ++ SK G
Sbjct: 424 -IREAGLDPQVSAYDALIQGYAKGGLYVEAGSTLYAMNKAGFQAPVSSVNSVMEAYSKVG 482
Query: 597 TSDDAIAFLKGMTSK 611
D+A+ F + K
Sbjct: 483 LHDEALEFFSELQQK 497
>gi|18394846|ref|NP_564110.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75174883|sp|Q9LN22.1|PPR54_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g20300, mitochondrial; Flags: Precursor
gi|9558596|gb|AAF88159.1|AC026234_10 Contains similarity to a hypothetical protein T3P18.15 gi|5454201
from Arabidopsis thaliana BAC T3P18 gb|AC005698 and
contains multiple PPR PF|01535 repeats [Arabidopsis
thaliana]
gi|17386104|gb|AAL38598.1|AF446865_1 At1g20300/F14O10_8 [Arabidopsis thaliana]
gi|15450347|gb|AAK96467.1| At1g20300/F14O10_8 [Arabidopsis thaliana]
gi|332191838|gb|AEE29959.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 537
Score = 62.4 bits (150), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 85/427 (19%), Positives = 169/427 (39%), Gaps = 61/427 (14%)
Query: 266 SNDLVKFVVDKLGD-----EPKKALIFFRWAEESGFVKHDES-SYNAMASVLGREDCIDR 319
S +V+ V++K G ++L FF WA H YN M + G+ D
Sbjct: 110 SPSVVRCVIEKCGSVRHGIPLHQSLAFFNWATSRDDYDHKSPHPYNEMIDLSGKVRQFDL 169
Query: 320 FWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAV-------------DLYEFAMACK 366
W ++D M+S+ E+ +ET ++ R+ + EAV D F++
Sbjct: 170 AWHLIDLMKSRNVEISIETFTILIRRYVRAGLASEAVHCFNRMEDYGCVPDKIAFSIVIS 229
Query: 367 N---------------------KPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRE---- 401
N +P V T L+R + ++ S+ +VF+E
Sbjct: 230 NLSRKRRASEAQSFFDSLKDRFEPDVIVYTNLVRGWCRAGEI-----SEAEKVFKEMKLA 284
Query: 402 --NGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKK 459
NV T ++ V+ AL G++ + + M + G ++ + + AG+
Sbjct: 285 GIEPNVYTYSI---VIDALCRCGQISRAHDVFADMLDSGCAPNAITFNNLMRVHVKAGRT 341
Query: 460 DEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDL 519
++ + + M+ G + + LI+ HC +L+ A M++K+ +A +
Sbjct: 342 EKVLQVYNQMKKLGCEPDTITYNFLIEAHCRDENLENAVKVLNTMIKKKCEVNASTFNTI 401
Query: 520 LVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDH 579
Y K R ++ +++ + E +P TY L++ + + L + M D
Sbjct: 402 F--RYIEKKRDVNGAHRMYSKMMEAKCEPNTVTYNILMRMFVGSKSTDMVLKMKKEMDDK 459
Query: 580 GFPPFVDPF---IKYVSKSGTSDDAIAFLKGMTSKR--FPSMSVVLCLFAAFFQARRHSE 634
P V+ + + G ++A K M ++ PS+S+ + A +A + +
Sbjct: 460 EVEPNVNTYRLLVTMFCGMGHWNNAYKLFKEMVEEKCLTPSLSLYEMVLAQLRRAGQLKK 519
Query: 635 AQDLLSK 641
++L+ K
Sbjct: 520 HEELVEK 526
Score = 38.9 bits (89), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 50/230 (21%), Positives = 98/230 (42%), Gaps = 13/230 (5%)
Query: 248 DIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAM 307
D++ D ++ +TF N+L++ V +K L + ++ G + D +YN +
Sbjct: 311 DVFADMLDSGCAPNAITF-NNLMRVHVK--AGRTEKVLQVYNQMKKLG-CEPDTITYNFL 366
Query: 308 ASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKN 367
R++ ++ KVL+ M K E+ T + ++ V A +Y M K
Sbjct: 367 IEAHCRDENLENAVKVLNTMIKKKCEVNASTFNTIFRYIEKKRDVNGAHRMYSKMMEAKC 426
Query: 368 KPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNS---VLKALISVGRM 424
+P+ L+R V SK DM V+++ +E + + +N+ ++ +G
Sbjct: 427 EPNTVTYNILMRMFVGSKSTDM-----VLKMKKEMDDKEVEPNVNTYRLLVTMFCGMGHW 481
Query: 425 GECNKILKAM-EEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASG 473
K+ K M EE S ++ + +L AG+ + E ++ M G
Sbjct: 482 NNAYKLFKEMVEEKCLTPSLSLYEMVLAQLRRAGQLKKHEELVEKMIQKG 531
>gi|255577256|ref|XP_002529510.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223531026|gb|EEF32879.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 804
Score = 62.4 bits (150), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 69/316 (21%), Positives = 139/316 (43%), Gaps = 12/316 (3%)
Query: 273 VVDKLGDEPKKALI---FFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRS 329
+V + P +L+ FF WA + ++ S+N + +L +++ + +W+VL E++
Sbjct: 61 IVTYIIKNPPNSLLGFRFFIWASKFRRLR-SWVSHNMIIDMLIKDNGFELYWQVLKEIKR 119
Query: 330 KGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDM 389
G+ + + ++ +++ +M+++AV+ +E KP V +L ++V K++ +
Sbjct: 120 CGFSISADAFTVLIQAYAKMDMIEKAVESFEMMKDFDCKPDVFTYNTVLH-VMVRKEVVL 178
Query: 390 RLFSKVVRVFREN--GNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKS 447
R+ + N N+ T ++L + + G+ ++ M + + + +
Sbjct: 179 LALGIYNRMLKLNCLPNIATFSIL---IDGMCKSGKTQNALQMFDEMTQRRILPNKITYT 235
Query: 448 KIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEK 507
I L A K D A M+ G + +L+ G C G +D+A K EK
Sbjct: 236 IIISGLCQAQKADVAYRLFIAMKDHGCIPDSVTYNALLHGFCKLGRVDEALGLL-KYFEK 294
Query: 508 EGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFK 567
+ L++ R DA + + + E+++KP Y ++K L FK
Sbjct: 295 DRYVLDKQGYSCLIDGLFRARRFEDA-QVWYRKMTEHNIKPDVILYTIMMKGLSKAGKFK 353
Query: 568 DALSLLCLMKDHGFPP 583
DAL LL M + G P
Sbjct: 354 DALRLLNEMTERGLVP 369
Score = 44.7 bits (104), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 107/593 (18%), Positives = 225/593 (37%), Gaps = 88/593 (14%)
Query: 100 DFTVVSDIFYKFSDVNDISKQLELSGVVFTHEMVLKVLKNLESSPDEARRFFNWVLEKES 159
DF + +++ VN I LE + +V ++KN +S RFF W +
Sbjct: 29 DFAISNEVLTIIDSVNPIEPALESKVPFLSPSIVTYIIKNPPNSL-LGFRFFIWASKFRR 87
Query: 160 ERLSSKTYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRNKMTEKFEK-EGLESDL 218
R S ++N+++ ++ + +W ++ +K+ G+ +++ + + + K + +E +
Sbjct: 88 LR-SWVSHNMIIDMLIKDNGFELYWQVLKEIKRCGFSISADAFTVLIQAYAKMDMIEKAV 146
Query: 219 EKLK-------------------------------GIFATGSIDNSIEKVAS------RI 241
E + GI+ N + +A+ +
Sbjct: 147 ESFEMMKDFDCKPDVFTYNTVLHVMVRKEVVLLALGIYNRMLKLNCLPNIATFSILIDGM 206
Query: 242 CKVVRSD----IWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIF--FRWAEESG 295
CK ++ ++ + +R++ +T++ ++ L K + + F ++ G
Sbjct: 207 CKSGKTQNALQMFDEMTQRRILPNKITYT-----IIISGLCQAQKADVAYRLFIAMKDHG 261
Query: 296 FVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEME--TCVKVLGRFSERNMVK 353
+ D +YNA+ + +D +L Y ++ + +C+ + G F R
Sbjct: 262 CIP-DSVTYNALLHGFCKLGRVDEALGLLKYFEKDRYVLDKQGYSCL-IDGLFRARRF-- 317
Query: 354 EAVDLYEFAMACKN-KPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLN 412
E ++ M N KP V T +++ + SK + +++ E G V N
Sbjct: 318 EDAQVWYRKMTEHNIKPDVILYTIMMKGL--SKAGKFKDALRLLNEMTERGLVPDTHCYN 375
Query: 413 SVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEAS 472
+++K +G + E + + + +S+ + + + +G +A + + ME
Sbjct: 376 ALIKGYCDLGLLDEAKSLHLEISKNDCFSSACTYTILICGMCRSGLVGDAQQIFNEMEKH 435
Query: 473 GSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAID 532
G + +LI G C AG+++KA F KM G L + NR +D
Sbjct: 436 GCYPSVVTFNALIDGFCKAGNIEKAQLLFYKM-------EIGRNPSLFLRLSQGANRVLD 488
Query: 533 ACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFV---DPFI 589
T E+L + L+ + + ++L + D GF P + + I
Sbjct: 489 TASL-------------QTMVEQLCDSGLILKAY----NILMQLTDSGFAPNIITYNILI 531
Query: 590 KYVSKSGTSDDAIAFLKGMTSKRFPSMSVVL-CLFAAFFQARRHSEAQDLLSK 641
K+G + A K + K SV L A R +A +L +
Sbjct: 532 HGFCKAGNINGAFKLFKELQLKGLSPDSVTYGTLINGLLSANREEDAFTVLDQ 584
>gi|147858101|emb|CAN78867.1| hypothetical protein VITISV_041982 [Vitis vinifera]
Length = 962
Score = 62.4 bits (150), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 72/346 (20%), Positives = 139/346 (40%), Gaps = 8/346 (2%)
Query: 300 DESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLY 359
D +Y ++ R +D + V D M +G + T ++ V EA+D+
Sbjct: 274 DVFTYTSLILGHCRNRNLDLAFGVFDRMVKEGCDPNSVTYSTLINGLCNEGRVDEALDML 333
Query: 360 EFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALI 419
E + +P+V T+ L + ++V ++ G +++ L
Sbjct: 334 EEMIEKGIEPTVY--TYTLPITALCAIEHEEEAIELVARMKKRGCRPNVQTYTALISGLS 391
Query: 420 SVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDK 479
+G++ + M + G + ++ + + L G+ A + ME GS +
Sbjct: 392 RLGKLEVAIGLYHKMLKEGLVPNTVTYNALINELCVGGRFSTALKIFHWMEGHGSLANTQ 451
Query: 480 MWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHN 539
+ +IKG C+ GD++KA F+KM+ K G + L+N Y +K +A + + +
Sbjct: 452 TYNEIIKGLCLGGDIEKAMVLFEKML-KMGPLPTVVTYNTLINGYLTKGNVNNAARLL-D 509
Query: 540 CVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPFIKYV---SKSG 596
++E +P TY EL+ + A M + G P + + SK G
Sbjct: 510 LMKENGCEPDEWTYNELVSGFSKWGKLESASFYFQEMVECGLNPNPVSYTTLIDGHSKDG 569
Query: 597 TSDDAIAFLKGMTSKRF-PSMSVVLCLFAAFFQARRHSEAQDLLSK 641
D A++ L+ M P++ + + R SEA+ + K
Sbjct: 570 KVDIALSLLERMEEMGCNPNVESYNAVINGLSKENRFSEAEKICDK 615
Score = 55.5 bits (132), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 78/380 (20%), Positives = 144/380 (37%), Gaps = 64/380 (16%)
Query: 225 FATGSIDNSIEKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKA 284
FA + + + SR+C ++ W E L+ L+ V +V + + +
Sbjct: 77 FAVPASREPFQAIVSRVCAILSRVQWKGSSE--LKQLSPQLKAHHVAEIV-AVHKDTESV 133
Query: 285 LIFFRWAEESGFVKHDESSYNAMASVLGR--------------------EDCIDRFWKVL 324
+ FF W + F KH+ + + +M + L R E+ I R L
Sbjct: 134 IQFFYWISKRPFYKHNMNCFISMLNRLVRDRVFAPADHIRILMIKACRNEEEIRRVADFL 193
Query: 325 DEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVS 384
+E+ G+ + +C +L + ++ MV+ A +LY+ + +PS
Sbjct: 194 NEISGMGFGFSLYSCNTLLIQLAKFEMVEGARNLYKQMLNSGIQPS-------------- 239
Query: 385 KQLDMRLFSKVVRVFRENGNVL-TDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASS 443
+ F+ ++ + + G V + +L+ + + +S + IL G +
Sbjct: 240 ----LLTFNTLINILSKKGKVREAELILSQIFQYDLSPDVFTYTSLIL------GHCRNR 289
Query: 444 NMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQK 503
N+ D A D M G D + +LI G C G +D+A D ++
Sbjct: 290 NL--------------DLAFGVFDRMVKEGCDPNSVTYSTLINGLCNEGRVDEALDMLEE 335
Query: 504 MVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQ 563
M+EK G Y L + C+ +A + V +++ +P TY LI L
Sbjct: 336 MIEK-GIEPTVYTYTLPITALCAIEHEEEAIELVAR-MKKRGCRPNVQTYTALISGLSRL 393
Query: 564 RGFKDALSLLCLMKDHGFPP 583
+ A+ L M G P
Sbjct: 394 GKLEVAIGLYHKMLKEGLVP 413
Score = 52.4 bits (124), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 118/569 (20%), Positives = 214/569 (37%), Gaps = 81/569 (14%)
Query: 141 ESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASH 200
E DEA ++EK E + TY L + + +E LV MKK+G
Sbjct: 323 EGRVDEALDMLEEMIEKGIEP-TVYTYTLPITALCAIEHEEEAIELVARMKKRGCRPNVQ 381
Query: 201 VRNKMTEKFEKEG-LESDLEKLKGIFATGSIDNSIEK--------VASRICKVVRSDIWG 251
+ + G LE + + G + N++ V R ++ W
Sbjct: 382 TYTALISGLSRLGKLEVAIGLYHKMLKEGLVPNTVTYNALINELCVGGRFSTALKIFHW- 440
Query: 252 DDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVL 311
+E N N+++K + LG + +KA++ F + G + +YN + +
Sbjct: 441 --MEGHGSLANTQTYNEIIKGLC--LGGDIEKAMVLFEKMLKMGPLP-TVVTYNTLINGY 495
Query: 312 GREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSV 371
+ ++ ++LD M+ G E + T +++ FS+ ++ A ++ + C P+
Sbjct: 496 LTKGNVNNAARLLDLMKENGCEPDEWTYNELVSGFSKWGKLESASFYFQEMVECGLNPNP 555
Query: 372 NCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKIL 431
T L+ ++D+ L ++ E G N+V+ L R E KI
Sbjct: 556 VSYTTLIDGHSKDGKVDIAL--SLLERMEEMGCNPNVESYNAVINGLSKENRFSEAEKIC 613
Query: 432 KAMEEGGFIAS------------SNMKSKIAFR-----------------------LSSA 456
M E G + + N +++ AF+ L
Sbjct: 614 DKMAEQGLLPNVITYTTLIDGLCRNGRTQFAFKIFHDMEKRKCLPNLYTYSSLIYGLCQE 673
Query: 457 GKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKE-GTSHAGY 515
GK DEA + ME G + + SLI G V G +D A ++MV+ ++ Y
Sbjct: 674 GKADEAEILLKEMERKGLAPDEVTFTSLIDGFVVLGRIDHAFLLLRRMVDVGCKPNYRTY 733
Query: 516 AIDL-------------------LVNTYCSKNRAIDACKFVHNCV---REYDLKPWHTTY 553
++ L V ++ + ++ + V N + E +P TY
Sbjct: 734 SVLLKGLQKECLLLEEKVAVQHEAVYSFSPHEKDVNF-EIVSNLLARMSEIGCEPTLDTY 792
Query: 554 EELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPFIKYV---SKSGTSDDAIAFLKGMTS 610
L+ L + F +A L+ MK+ GF P + + + K+ D A+ + +
Sbjct: 793 STLVSGLCRKGRFYEAEQLVKDMKERGFCPDREIYYSLLIAHCKNLEVDHALKIFHSIEA 852
Query: 611 KRFP-SMSVVLCLFAAFFQARRHSEAQDL 638
K F +S+ L A +A + EAQ L
Sbjct: 853 KGFQLHLSIYRALICALCKAGQVEEAQAL 881
Score = 43.1 bits (100), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 49/228 (21%), Positives = 88/228 (38%), Gaps = 22/228 (9%)
Query: 303 SYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFA 362
+Y+++ L +E D +L EM KG + T ++ F + A L
Sbjct: 662 TYSSLIYGLCQEGKADEAEILLKEMERKGLAPDEVTFTSLIDGFVVLGRIDHAFLLLRRM 721
Query: 363 MACKNKPSVNC-----------CTFLLRKIVVS-----------KQLDMRLFSKVVRVFR 400
+ KP+ C L K+ V K ++ + S ++
Sbjct: 722 VDVGCKPNYRTYSVLLKGLQKECLLLEEKVAVQHEAVYSFSPHEKDVNFEIVSNLLARMS 781
Query: 401 ENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKD 460
E G T ++++ L GR E +++K M+E GF + + + D
Sbjct: 782 EIGCEPTLDTYSTLVSGLCRKGRFYEAEQLVKDMKERGFCPDREIYYSLLIAHCKNLEVD 841
Query: 461 EANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKE 508
A + +EA G + ++ +LI C AG +++A F M+EKE
Sbjct: 842 HALKIFHSIEAKGFQLHLSIYRALICALCKAGQVEEAQALFDNMLEKE 889
>gi|42570531|ref|NP_850859.2| SNF1-like protein kinase [Arabidopsis thaliana]
gi|75160582|sp|Q8S9D1.1|PP395_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At5g21222; AltName: Full=SNF1-like protein kinase AtC401
gi|19071860|dbj|BAB85674.1| SNF1-like protein kinase [Arabidopsis thaliana]
gi|332005563|gb|AED92946.1| SNF1-like protein kinase [Arabidopsis thaliana]
Length = 831
Score = 62.4 bits (150), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 87/382 (22%), Positives = 158/382 (41%), Gaps = 26/382 (6%)
Query: 144 PDEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRN 203
P EA FN ++E E + S TY ++ + L+ ++K G + + N
Sbjct: 335 PQEAHSIFNTLIE-EGHKPSLITYTTLVTALTRQKHFHSLLSLISKVEKNGLKPDTILFN 393
Query: 204 KMTEKFEKEG-LESDL---EKLK--GIFATGSIDNSIEKVASRICKVVRSDIWGDDVER- 256
+ + G L+ + EK+K G T S N++ K +I K+ S D + R
Sbjct: 394 AIINASSESGNLDQAMKIFEKMKESGCKPTASTFNTLIKGYGKIGKLEESSRLLDMMLRD 453
Query: 257 QLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGR--- 313
++ N N LV+ ++ E +++ +S VK D ++N +A R
Sbjct: 454 EMLQPNDRTCNILVQAWCNQRKIEEAWNIVY---KMQSYGVKPDVVTFNTLAKAYARIGS 510
Query: 314 ----EDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKP 369
ED I + M + + TC ++ + E ++EA+ + P
Sbjct: 511 TCTAEDMI------IPRMLHNKVKPNVRTCGTIVNGYCEEGKMEEALRFFYRMKELGVHP 564
Query: 370 SVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNK 429
++ L++ + DM +VV + E G ++++ A SVG M C +
Sbjct: 565 NLFVFNSLIKGFLNIN--DMDGVGEVVDLMEEFGVKPDVVTFSTLMNAWSSVGDMKRCEE 622
Query: 430 ILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHC 489
I M EGG + S +A + AG+ ++A + ++ M G ++ +I G C
Sbjct: 623 IYTDMLEGGIDPDIHAFSILAKGYARAGEPEKAEQILNQMRKFGVRPNVVIYTQIISGWC 682
Query: 490 VAGDLDKAADCFQKMVEKEGTS 511
AG++ KA ++KM G S
Sbjct: 683 SAGEMKKAMQVYKKMCGIVGLS 704
Score = 42.4 bits (98), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 29/129 (22%), Positives = 61/129 (47%), Gaps = 1/129 (0%)
Query: 430 ILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHC 489
++ +E+ G + + + I S +G D+A + + M+ SG + +LIKG+
Sbjct: 376 LISKVEKNGLKPDTILFNAIINASSESGNLDQAMKIFEKMKESGCKPTASTFNTLIKGYG 435
Query: 490 VAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPW 549
G L++++ M+ E ++LV +C++ + +A V+ ++ Y +KP
Sbjct: 436 KIGKLEESSRLLDMMLRDEMLQPNDRTCNILVQAWCNQRKIEEAWNIVYK-MQSYGVKPD 494
Query: 550 HTTYEELIK 558
T+ L K
Sbjct: 495 VVTFNTLAK 503
>gi|242067038|ref|XP_002454808.1| hypothetical protein SORBIDRAFT_04g037860 [Sorghum bicolor]
gi|241934639|gb|EES07784.1| hypothetical protein SORBIDRAFT_04g037860 [Sorghum bicolor]
Length = 951
Score = 62.4 bits (150), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 70/318 (22%), Positives = 125/318 (39%), Gaps = 13/318 (4%)
Query: 297 VKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAV 356
V D YN++ + D +V++ M++ G E + T ++G + + + EA
Sbjct: 218 VALDVVGYNSLVAGFFHSGDADAALEVVERMKADGVEPNVVTYTALIGEYCKGKGMDEAF 277
Query: 357 DLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFREN---GNVLTDAMLNS 413
LYE + P V + L+ + Q FS+ +FRE G +
Sbjct: 278 SLYEGMVRSGVLPDVVTLSALVDGLCRDGQ-----FSEAYALFREMDKIGVAPNHVTYCT 332
Query: 414 VLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASG 473
++ +L R E +L M G + M + + RL GK +EA + + H ++
Sbjct: 333 LIDSLAKARRGSESLGLLGEMVSRGVVMDLVMYTALMDRLGKEGKIEEAKDVLRHAQSDN 392
Query: 474 SDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDA 533
+ L+ HC AG++D A +M EK + ++N + A
Sbjct: 393 ITPNFVTYTVLVDAHCRAGNIDGAEQVLLQMEEKSVIPNV-VTFSSIINGLVKRGCLGKA 451
Query: 534 CKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPP---FVDPFIK 590
++ +++ + P TY LI +G + AL + M G VD +
Sbjct: 452 ADYMRK-MKDSGIAPNVVTYGTLIDGFFKFQGQEAALDVYRDMLHEGVEANNFVVDSLVN 510
Query: 591 YVSKSGTSDDAIAFLKGM 608
+ K+G + A A K M
Sbjct: 511 GLRKNGNIEGAEALFKDM 528
Score = 43.9 bits (102), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 65/297 (21%), Positives = 110/297 (37%), Gaps = 40/297 (13%)
Query: 287 FFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRF 346
F + +G + D+++YN M + RE + K+L EM+ + + T ++
Sbjct: 594 FLKEMRNTGL-EPDQATYNTMIAARCREGKTSKALKLLKEMKRNSIKPNLITYTTLVVGL 652
Query: 347 SERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVL 406
E +VK+A FLL ++ + G
Sbjct: 653 LEAGVVKKA-------------------KFLLNEMASA------------------GFAP 675
Query: 407 TDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFM 466
T VL+A R +I + M G A + + + L G A +
Sbjct: 676 TSLTHQRVLQACSGSRRPDVILEIHELMMGAGLHADITVYNTLVHVLCCHGMARNATVVL 735
Query: 467 DHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCS 526
D M G + +LI GHC + LD A + +M+ +G S + L+ S
Sbjct: 736 DEMLTRGIAPDTITFNALILGHCKSSHLDNAFAIYAQMLH-QGLSPNIATFNTLLGGLES 794
Query: 527 KNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPP 583
R I V + +++ L+P + TY+ L+ + +AL L C M GF P
Sbjct: 795 AGR-IGEADTVLSDMKKVGLEPNNLTYDILVTGYAKKSNKVEALRLYCEMVSKGFIP 850
Score = 39.7 bits (91), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 34/148 (22%), Positives = 64/148 (43%), Gaps = 2/148 (1%)
Query: 409 AMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDH 468
A N++L L S GR+GE + +L M++ G ++ + + K EA
Sbjct: 783 ATFNTLLGGLESAGRIGEADTVLSDMKKVGLEPNNLTYDILVTGYAKKSNKVEALRLYCE 842
Query: 469 MEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKN 528
M + G + SL+ AG +++A + F +M ++ G H D+L+N +
Sbjct: 843 MVSKGFIPKASTYNSLMSDFAKAGMMNQAKELFSEM-KRRGVLHTSSTYDILLNGWSKLR 901
Query: 529 RAIDACKFVHNCVREYDLKPWHTTYEEL 556
I+ + + ++E KP T +
Sbjct: 902 NGIEV-RILLKDMKELGFKPSKGTISSM 928
>gi|125548803|gb|EAY94625.1| hypothetical protein OsI_16402 [Oryza sativa Indica Group]
Length = 769
Score = 62.4 bits (150), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 76/336 (22%), Positives = 139/336 (41%), Gaps = 29/336 (8%)
Query: 283 KALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKV 342
KA + GFV D S+Y+ + + L +++ + + EM+ G ++ T +
Sbjct: 440 KAFQLIKEMMRKGFVP-DTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTPDVYTYTIL 498
Query: 343 LGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMR--LFSKVVRVFR 400
+ F + ++++A L+E + P+V T L+ + +KQ+ +F ++V
Sbjct: 499 IDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDAGC 558
Query: 401 ENGNVLTDAMLNSVLKA------------LISVGRMGECNKILKAMEEGGFIASSNMKSK 448
+V A+++ + KA LI + + + +
Sbjct: 559 RPNDVTYGALVDGLCKAGNISKAFEVYAKLIGTSDSADSDFYFPCEDRHTLAPNVVTYGA 618
Query: 449 IAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKE 508
+ L A K D A+E +D M +SG + ++ +LI G C AG +D A + F +M
Sbjct: 619 LVDGLCKAHKVDHAHELLDAMLSSGCEPNHIVYDALIDGFCKAGKIDSAQEVFLQM---- 674
Query: 509 GTSHAGYAIDLLVNTYCS------KNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLV 562
+ GY V+TY S K+ +D V + + + P TY +I L
Sbjct: 675 --TKCGYLPS--VHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCTPNVVTYTAMIDGLCR 730
Query: 563 QRGFKDALSLLCLMKDHGFPPFVDPFIKYVSKSGTS 598
+ AL LL LM++ G P V + + G S
Sbjct: 731 IGESEKALKLLSLMEEKGCSPNVVTYTALIDGLGQS 766
Score = 42.7 bits (99), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 83/394 (21%), Positives = 151/394 (38%), Gaps = 38/394 (9%)
Query: 241 ICKVVRSDIWGDD----VERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGF 296
I K +R+ +G D ER LR ++ +V V+ + D P+ FF WAE
Sbjct: 77 ISKAIRA--FGADFDGKAERVLRRCRGFLTDSVVVAVLGAVRDAPELCARFFLWAERQVG 134
Query: 297 VKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAV 356
H + Y+A+A LG + ++L E+ + E+ ++ R M EA+
Sbjct: 135 YSHTGACYDALADALGFDGRARDAERLLREIGEEDREVLGRLLNVLVRRCCRGGMWNEAL 194
Query: 357 D----LYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLN 412
+ L +F +PS L++ + + Q+D+ +V + E+G + +
Sbjct: 195 EELGRLKDFGY----RPSKVTYNALVQVLSSAGQVDLGF--RVQKEMSESGFCMDRFTVG 248
Query: 413 SVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEAS 472
AL GR + L +E F + + + + L A DEA F+ M +
Sbjct: 249 CFAHALCKEGRWAD---ALDMIEREDFKLDTVLCTHMISGLMEASYFDEAMSFLHRMRCN 305
Query: 473 GSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAID 532
+ +L+ G L M+ EG + + LV++YC++
Sbjct: 306 SCIPNVVTYRTLLSGFLKKKQLGWCKRIINMMM-TEGCNPNPSLFNSLVHSYCNEKDYAY 364
Query: 533 ACKFVHNCVREYDLKPWHTTYEELIKNL-------------LVQRGFKDALSLLCLMKDH 579
A K + N + P + Y I ++ L ++ + + L+ C++
Sbjct: 365 AYKLL-NRMTTCGCPPGYVVYNIFIGSICGQEKLPSPDLLDLAEKIYGEMLAANCVLNKV 423
Query: 580 GFPPFVDPFIKYVSKSGTSDDAIAFLKGMTSKRF 613
V F + + G D A +K M K F
Sbjct: 424 N----VANFARCLCGVGKFDKAFQLIKEMMRKGF 453
Score = 41.2 bits (95), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 37/156 (23%), Positives = 64/156 (41%), Gaps = 2/156 (1%)
Query: 405 VLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANE 464
VL + + + L VG+ + +++K M GF+ ++ SK+ L A K ++A
Sbjct: 419 VLNKVNVANFARCLCGVGKFDKAFQLIKEMMRKGFVPDTSTYSKVITFLCHATKVEKAFL 478
Query: 465 FMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTY 524
M+ G + LI C AG +++A F++M G S L++ Y
Sbjct: 479 LFQEMKMVGVTPDVYTYTILIDSFCKAGLIEQAQWLFEEM-RSVGCSPTVVTYTALIHAY 537
Query: 525 CSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNL 560
+ A H V + +P TY L+ L
Sbjct: 538 LKAKQVPQANDIFHRMV-DAGCRPNDVTYGALVDGL 572
>gi|357146655|ref|XP_003574066.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g13630-like [Brachypodium distachyon]
Length = 795
Score = 62.4 bits (150), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 121/537 (22%), Positives = 202/537 (37%), Gaps = 98/537 (18%)
Query: 145 DEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLVDVMKKKGYG-------- 196
DEA F V E E +L + TYN ++ + GL +E ++ M+ +G
Sbjct: 290 DEAVDLFERVTE-EGMKLETVTYNSLINGYRLLGLTREVPKIIQFMRYQGIEPDIVTYTI 348
Query: 197 -VASH-----------VRNKMTEK---------------FEKEGLESDLEKLKGIFATGS 229
+A H +RN + ++ K+GL + E L G +
Sbjct: 349 LIAGHCESGDVEEGMKIRNDILDQGLQLNIVTYSVLLNALFKKGLVHEAENLLGEIHSIG 408
Query: 230 IDNSIEKVASRI---CKVVRSDIWGDDVERQLRDLNVTF-SNDLVKFVVDKL----GDEP 281
+D I + I CK+ ++ER L +V S +V ++ L G
Sbjct: 409 LDMDIIAYSILIHGYCKL-------GEIERALEVCDVMCCSQKVVPTSLNHLSILVGLCK 461
Query: 282 KKALIFFRWAEESGFVKH---DESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMET 338
K L+ RW E+ VK+ D YN + ID + K+ D
Sbjct: 462 KGLLVEARWYLENVAVKYQPGDVVLYNVV---------IDGYAKIGD------------- 499
Query: 339 CVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRV 398
+ AV LY+ + P++ C +L K D++ R
Sbjct: 500 -------------ISNAVGLYDQIVIAGMFPTIVTCNSILYG--YCKCGDLQAAESYFRA 544
Query: 399 FRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGK 458
+ + + T +++ AL G++ IL M E G ++ S + L +
Sbjct: 545 IQISSLLPTMVTYTTLMDALSEAGKVNTMLSILYEMVEKGIKPNAITYSVVIKGLCKELR 604
Query: 459 KDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAID 518
+A F+D+M G + + +LI+G C D+ A +MV G +
Sbjct: 605 FHDAIHFLDNMHGEGVNADPVTYNTLIQGFCEVQDIQMAFHIHDRMVYC-GIVPTPVTYN 663
Query: 519 LLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKD 578
L+N C K + I A +++ +RE ++ Y LIK + +A+SL + D
Sbjct: 664 FLINVLCLKGQVIQA-EYLLESLRERGIELRKFAYTTLIKAECAKGMPYEAISLFGKLLD 722
Query: 579 HGFPPFVDPF---IKYVSKSGTSDDAIAFLKGMTSKR-FPSMSVVLCLFAAFFQARR 631
GF V F I + K + +A+ F+ M S FP V L A Q R+
Sbjct: 723 DGFETTVKDFSAAINRLCKRKFAKEAVMFIPFMLSAGVFPDTQVYYVLVRA-LQKRK 778
Score = 40.4 bits (93), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 55/120 (45%), Gaps = 4/120 (3%)
Query: 495 DKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYE 554
D A + F++M E G S + Y+ ++++ C +++ +A F+ + KP ++
Sbjct: 184 DMALELFEEM-EAYGISKSEYSHSIIIDGLCKQDKVGEALSFLQEARKGERFKPLGMSFN 242
Query: 555 ELIKNLLVQRGFKDALSLLCLMKDHGFPP---FVDPFIKYVSKSGTSDDAIAFLKGMTSK 611
L+ L + A S LCLM +G P I + K G D+A+ + +T +
Sbjct: 243 VLMSALCNWGFIQPAKSFLCLMLKYGLNPDRYTYSTLIHGLCKIGFLDEAVDLFERVTEE 302
>gi|359497112|ref|XP_003635427.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
mitochondrial-like [Vitis vinifera]
Length = 740
Score = 62.4 bits (150), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 79/327 (24%), Positives = 144/327 (44%), Gaps = 22/327 (6%)
Query: 300 DESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLY 359
D +YN + L ++ + ++++EM+ KG E + T ++ RF + ++EA ++
Sbjct: 406 DIFTYNTLILGLCKKGYLVSARELMNEMQIKGCEPNVITYTILIDRFCKEGRLEEARNVL 465
Query: 360 EFAMACK----NKPSVNC-CTFLLRKIVVSKQLDM--RLFSKVVRVFRENGNVLTDAMLN 412
+ M+ K N NC + L + V L+M + SK + ++ T N
Sbjct: 466 D-EMSGKGLALNAVGYNCLISALCKDEKVQDALNMFGDMSSKGCK-----PDIFT---FN 516
Query: 413 SVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEAS 472
S++ L V + E + + M G IA++ + + G EA + ++ M
Sbjct: 517 SLIFGLCKVNKFEEALGLYQDMLLEGVIANTITYNTLIHAFLRRGAMQEALKLVNDMLFR 576
Query: 473 GSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAID 532
G + D + LIK C AG+++K F+ M+ K G + + ++L+N C
Sbjct: 577 GCPLDDITYNGLIKALCRAGNIEKGLALFEDMMSK-GLNPNNISCNILINGLCRTGNIQH 635
Query: 533 ACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPP---FVDPFI 589
A +F+ + + L P TY LI L ++AL+L ++ G P + I
Sbjct: 636 ALEFLRDMIHR-GLTPDIVTYNSLINGLCKTGRAQEALNLFDKLQVEGICPDAITYNTLI 694
Query: 590 KYVSKSGTSDDAIAFL-KGMTSKRFPS 615
+ K G DDA L +G+ S P+
Sbjct: 695 SWHCKEGMFDDAHLLLSRGVDSGFIPN 721
Score = 43.5 bits (101), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 82/380 (21%), Positives = 150/380 (39%), Gaps = 15/380 (3%)
Query: 268 DLVKFVVDKLG--DEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLD 325
D+ ++DKLG E K ++ G V ES + + GR + ++L
Sbjct: 130 DVYYMLIDKLGAAGEFKTTDALLMQMKQEGIV-FRESLFILIMKHYGRAGLPGQATRLLL 188
Query: 326 EMRS-KGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVS 384
+MR E + VL N K +++ ++ P+V +++ + +
Sbjct: 189 DMRGVYSCEPTFRSYNVVLDVLLAGNCPKVVPNVFYEMLSKGISPTVYTFGVVMKALCLV 248
Query: 385 KQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSN 444
++D +++ +G V + +++ AL VGR+ E K+L+ M G I N
Sbjct: 249 NEVDSA--CALLKDMTRHGCVPNAIVYQTLIHALSKVGRVNEVLKLLEEMLLMGCIPDVN 306
Query: 445 MKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKM 504
+ L + EA + +D M G + L+ G C G +D+A +M
Sbjct: 307 TFNDAIHGLCKMLRIHEAAKLVDRMLLRGFTPNSFTYGVLMHGLCRMGKVDEA-----RM 361
Query: 505 VEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQR 564
+ + + + L+N Y S+ R +A +H + P TY LI L +
Sbjct: 362 LLNKVPNPNVVLFNTLINGYVSRGRLDEAKAVMHESMLSVGCGPDIFTYNTLILGLCKKG 421
Query: 565 GFKDALSLLCLMKDHGFPPFVDPF---IKYVSKSGTSDDAIAFLKGMTSKRFPSMSVVL- 620
A L+ M+ G P V + I K G ++A L M+ K +V
Sbjct: 422 YLVSARELMNEMQIKGCEPNVITYTILIDRFCKEGRLEEARNVLDEMSGKGLALNAVGYN 481
Query: 621 CLFAAFFQARRHSEAQDLLS 640
CL +A + + +A ++
Sbjct: 482 CLISALCKDEKVQDALNMFG 501
>gi|19071826|dbj|BAB85657.1| PnC401 homologue [Arabidopsis thaliana]
Length = 831
Score = 62.4 bits (150), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 87/382 (22%), Positives = 158/382 (41%), Gaps = 26/382 (6%)
Query: 144 PDEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRN 203
P EA FN ++E E + S TY ++ + L+ ++K G + + N
Sbjct: 335 PQEAHSIFNTLIE-EGHKPSLITYTTLVTALTRQKHFHSLLSLISKVEKNGLKPDTILFN 393
Query: 204 KMTEKFEKEG-LESDL---EKLK--GIFATGSIDNSIEKVASRICKVVRSDIWGDDVER- 256
+ + G L+ + EK+K G T S N++ K +I K+ S D + R
Sbjct: 394 AIINASSESGNLDQAMKIFEKMKESGCKPTASTFNTLIKGYGKIGKLEESSRLLDMMLRD 453
Query: 257 QLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGR--- 313
++ N N LV+ ++ E +++ +S VK D ++N +A R
Sbjct: 454 EMLQPNDRTCNILVQAWCNQRKIEEAWNIVY---KMQSYGVKPDVVTFNTLAKAYARIGS 510
Query: 314 ----EDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKP 369
ED I + M + + TC ++ + E ++EA+ + P
Sbjct: 511 TCTAEDMI------IPRMLHNKVKPNVRTCGTIVNGYCEEGKMEEALRFFYRMKELGVHP 564
Query: 370 SVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNK 429
++ L++ + DM +VV + E G ++++ A SVG M C +
Sbjct: 565 NLFVFNSLIKGFLNIN--DMDGVGEVVDLMEEFGVKPDVVTFSTLMNAWSSVGDMKRCEE 622
Query: 430 ILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHC 489
I M EGG + S +A + AG+ ++A + ++ M G ++ +I G C
Sbjct: 623 IYTDMLEGGIDPDIHAFSILAKGYARAGEPEKAKQILNQMRKFGVRPNVVIYTQIISGWC 682
Query: 490 VAGDLDKAADCFQKMVEKEGTS 511
AG++ KA ++KM G S
Sbjct: 683 SAGEMKKAMQVYKKMCGIVGLS 704
Score = 42.4 bits (98), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 29/129 (22%), Positives = 61/129 (47%), Gaps = 1/129 (0%)
Query: 430 ILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHC 489
++ +E+ G + + + I S +G D+A + + M+ SG + +LIKG+
Sbjct: 376 LISKVEKNGLKPDTILFNAIINASSESGNLDQAMKIFEKMKESGCKPTASTFNTLIKGYG 435
Query: 490 VAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPW 549
G L++++ M+ E ++LV +C++ + +A V+ ++ Y +KP
Sbjct: 436 KIGKLEESSRLLDMMLRDEMLQPNDRTCNILVQAWCNQRKIEEAWNIVYK-MQSYGVKPD 494
Query: 550 HTTYEELIK 558
T+ L K
Sbjct: 495 VVTFNTLAK 503
>gi|115436822|ref|NP_001043145.1| Os01g0505500 [Oryza sativa Japonica Group]
gi|56201654|dbj|BAD73118.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|113532676|dbj|BAF05059.1| Os01g0505500 [Oryza sativa Japonica Group]
gi|125570544|gb|EAZ12059.1| hypothetical protein OsJ_01942 [Oryza sativa Japonica Group]
Length = 540
Score = 62.4 bits (150), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 100/468 (21%), Positives = 181/468 (38%), Gaps = 75/468 (16%)
Query: 117 ISKQLELSGVVFTHEMVLKVLKNLESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVGV 176
I+ L+ GV + ++V +VLKNL ++ A FF W ++ R S++ ++ ++ +G
Sbjct: 107 IAPVLDALGVTVSPQLVAEVLKNLSNAGILALAFFRWAERQQGFRYSAEGFHNLIEALGK 166
Query: 177 HGLVQEFWGLVDVMKKKG-------------YGVASHVRNKMTEKFEKE---GLESDLEK 220
+ W LV+ M+ + Y A V+ + E FEK GL++DL
Sbjct: 167 IKQFRLVWSLVEAMRCRSCLSKDTFKIIVRRYARARKVKEAV-ETFEKMSSFGLKTDL-- 223
Query: 221 LKGIFATGSIDNSIEKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDE 280
S N + + S+ +V ++ +++R+ R F DL + V G
Sbjct: 224 --------SDYNWLIDILSKSKQVKKAHAIFKEMKRKGR-----FIPDLKTYTVLMEGWG 270
Query: 281 PKKALIFFRWAEESGF---VKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEME 337
+K L+ + + +K D +Y + S + D KV EM G
Sbjct: 271 HEKDLLMLKAVYQEMLDAGIKPDVVAYGMLISAFCKSGKCDEAIKVFHEMEESG------ 324
Query: 338 TCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVR 397
C P V C L+ + ++LD L K +
Sbjct: 325 ---------------------------CMPSPHVYC--MLINGLGSMERLDEAL--KYFQ 353
Query: 398 VFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAG 457
+ +E+G + N+V+ A K++ M + G ++ I L +
Sbjct: 354 LSKESGFPMEVPTCNAVIGAYCRALEFHHAFKMVDEMRKSGIGPNTRTYDIILNHLIKSE 413
Query: 458 KKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAI 517
K +EA ME G + + ++ C +D A +++M EK G +
Sbjct: 414 KIEEAYNLFQRMERDGCEPELNTYTMMVGMFCSNERVDMALKVWKQMKEK-GVLPCMHMF 472
Query: 518 DLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRG 565
L+N C +NR +AC + + + ++P + L K LV+ G
Sbjct: 473 SALINGLCFENRLEEACVYFQEML-DKGIRPPGQLFSNL-KEALVEGG 518
>gi|29294052|gb|AAO73889.1| protein kinase family [Arabidopsis thaliana]
Length = 854
Score = 62.4 bits (150), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 87/382 (22%), Positives = 158/382 (41%), Gaps = 26/382 (6%)
Query: 144 PDEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRN 203
P EA FN ++E E + S TY ++ + L+ ++K G + + N
Sbjct: 358 PQEAHSIFNTLIE-EGHKPSLITYTTLVTALTRQKHFHSLLSLISKVEKNGLKPDTILFN 416
Query: 204 KMTEKFEKEG-LESDL---EKLK--GIFATGSIDNSIEKVASRICKVVRSDIWGDDVER- 256
+ + G L+ + EK+K G T S N++ K +I K+ S D + R
Sbjct: 417 AIINASSESGNLDQAMKIFEKMKESGCKPTASTFNTLIKGYGKIGKLEESSRLLDMMLRD 476
Query: 257 QLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGR--- 313
++ N N LV+ ++ E +++ +S VK D ++N +A R
Sbjct: 477 EMLQPNDRTCNILVQAWCNQRKIEEAWNIVY---KMQSYGVKPDVVTFNTLAKAYARIGS 533
Query: 314 ----EDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKP 369
ED I + M + + TC ++ + E ++EA+ + P
Sbjct: 534 TCTAEDMI------IPRMLHNKVKPNVRTCGTIVNGYCEEGKMEEALRFFYRMKELGVHP 587
Query: 370 SVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNK 429
++ L++ + DM +VV + E G ++++ A SVG M C +
Sbjct: 588 NLFVFNSLIKGFLNIN--DMDGVGEVVDLMEEFGVKPDVVTFSTLMNAWSSVGDMKRCEE 645
Query: 430 ILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHC 489
I M EGG + S +A + AG+ ++A + ++ M G ++ +I G C
Sbjct: 646 IYTDMLEGGIDPDIHAFSILAKGYARAGEPEKAEQILNQMRKFGVRPNVVIYTQIISGWC 705
Query: 490 VAGDLDKAADCFQKMVEKEGTS 511
AG++ KA ++KM G S
Sbjct: 706 SAGEMKKAMQVYKKMCGIVGLS 727
Score = 42.7 bits (99), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 29/129 (22%), Positives = 61/129 (47%), Gaps = 1/129 (0%)
Query: 430 ILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHC 489
++ +E+ G + + + I S +G D+A + + M+ SG + +LIKG+
Sbjct: 399 LISKVEKNGLKPDTILFNAIINASSESGNLDQAMKIFEKMKESGCKPTASTFNTLIKGYG 458
Query: 490 VAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPW 549
G L++++ M+ E ++LV +C++ + +A V+ ++ Y +KP
Sbjct: 459 KIGKLEESSRLLDMMLRDEMLQPNDRTCNILVQAWCNQRKIEEAWNIVYK-MQSYGVKPD 517
Query: 550 HTTYEELIK 558
T+ L K
Sbjct: 518 VVTFNTLAK 526
>gi|145360025|ref|NP_179305.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|122223754|sp|Q0WPZ6.1|PP158_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g17140
gi|110737729|dbj|BAF00803.1| hypothetical protein [Arabidopsis thaliana]
gi|330251496|gb|AEC06590.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 874
Score = 62.0 bits (149), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 126/574 (21%), Positives = 230/574 (40%), Gaps = 77/574 (13%)
Query: 119 KQLELSGV---VFTHEMVLKVLKNLESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVG 175
K + L G+ +T ++++ L + S D AR F+ + EK + + T+ +++R
Sbjct: 136 KDMVLCGIAPQTYTFNLLIRALCD-SSCVDAARELFDEMPEKGC-KPNEFTFGILVRGYC 193
Query: 176 VHGLVQEFWGLVDVMKKKGYGVASHVRNKMTEKFEKEGLESDLEKLKGIFATGSIDNSIE 235
GL + L++ M+ G + N + F +EG D EK+ + I
Sbjct: 194 KAGLTDKGLELLNAMESFGVLPNKVIYNTIVSSFCREGRNDDSEKMVEKMREEGLVPDIV 253
Query: 236 KVASRICKVVR-----------SDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKA 284
SRI + + SD+ D+ R ++T++ L F L ++ K
Sbjct: 254 TFNSRISALCKEGKVLDASRIFSDMELDEYLGLPRPNSITYNLMLKGFCKVGLLEDAKTL 313
Query: 285 LIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKG-------YEMEME 337
R ++ ++ SYN L R VL +M KG Y + M+
Sbjct: 314 FESIRENDDLASLQ----SYNIWLQGLVRHGKFIEAETVLKQMTDKGIGPSIYSYNILMD 369
Query: 338 TCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDM--RLFSKV 395
K LG S+ K V L + C + + C LL ++D L ++
Sbjct: 370 GLCK-LGMLSD---AKTIVGLMKRNGVCPDAVTYGC---LLHGYCSVGKVDAAKSLLQEM 422
Query: 396 VRVFRENGNVLTDA-MLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLS 454
+R N L +A N +L +L +GR+ E ++L+ M E G+ + + I L
Sbjct: 423 MR-----NNCLPNAYTCNILLHSLWKMGRISEAEELLRKMNEKGYGLDTVTCNIIVDGLC 477
Query: 455 SAGKKDEANEFMDHMEASGS----DVGDK-------------------MWVSLIKGHCVA 491
+G+ D+A E + M GS ++G+ + +L+ G C A
Sbjct: 478 GSGELDKAIEIVKGMRVHGSAALGNLGNSYIGLVDDSLIENNCLPDLITYSTLLNGLCKA 537
Query: 492 GDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHT 551
G +A + F +M+ E A ++ ++ +C + + A + +++ + K H
Sbjct: 538 GRFAEAKNLFAEMM-GEKLQPDSVAYNIFIHHFCKQGKISSAFRV----LKDMEKKGCHK 592
Query: 552 ---TYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPF---IKYVSKSGTSDDAIAFL 605
TY LI L ++ + L+ MK+ G P + + I+Y+ + +DA L
Sbjct: 593 SLETYNSLILGLGIKNQIFEIHGLMDEMKEKGISPNICTYNTAIQYLCEGEKVEDATNLL 652
Query: 606 KGMTSKRF-PSMSVVLCLFAAFFQARRHSEAQDL 638
M K P++ L AF + AQ++
Sbjct: 653 DEMMQKNIAPNVFSFKYLIEAFCKVPDFDMAQEV 686
Score = 43.9 bits (102), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 77/360 (21%), Positives = 146/360 (40%), Gaps = 26/360 (7%)
Query: 291 AEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERN 350
A ES V ++ YN + S RE D K++++MR +G ++ T + +
Sbjct: 207 AMESFGVLPNKVIYNTIVSSFCREGRNDDSEKMVEKMREEGLVPDIVTFNSRISALCKEG 266
Query: 351 MVKEA------VDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGN 404
V +A ++L E+ P N T+ L K + + REN +
Sbjct: 267 KVLDASRIFSDMELDEYL----GLPRPNSITYNLMLKGFCKVGLLEDAKTLFESIRENDD 322
Query: 405 VLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANE 464
+ + N L+ L+ G+ E +LK M + G S + + L G +A
Sbjct: 323 LASLQSYNIWLQGLVRHGKFIEAETVLKQMTDKGIGPSIYSYNILMDGLCKLGMLSDAKT 382
Query: 465 FMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTY 524
+ M+ +G + L+ G+C G +D A Q+M+ +A Y ++L+++
Sbjct: 383 IVGLMKRNGVCPDAVTYGCLLHGYCSVGKVDAAKSLLQEMMRNNCLPNA-YTCNILLHSL 441
Query: 525 CSKNRAIDACKFVHNCVREYDLKPW--HTTYEELIKNLLVQRGFKD-ALSLLCLMKDHGF 581
R +A +R+ + K + T +I + L G D A+ ++ M+ HG
Sbjct: 442 WKMGRISEA----EELLRKMNEKGYGLDTVTCNIIVDGLCGSGELDKAIEIVKGMRVHGS 497
Query: 582 PPFVDPFIKYVSKSGTSDDAIAFLKGMTSKRFPSMSVVLCLFAAFFQARRHSEAQDLLSK 641
+ Y+ G DD++ + + P + L +A R +EA++L ++
Sbjct: 498 AALGNLGNSYI---GLVDDSL-----IENNCLPDLITYSTLLNGLCKAGRFAEAKNLFAE 549
Score = 39.7 bits (91), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 75/385 (19%), Positives = 156/385 (40%), Gaps = 41/385 (10%)
Query: 166 TYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRNKMTEKFEKEG-LESDLEKLKGI 224
T N++L + G + E L+ M +KGYG+ + N + + G L+ +E +KG+
Sbjct: 433 TCNILLHSLWKMGRISEAEELLRKMNEKGYGLDTVTCNIIVDGLCGSGELDKAIEIVKGM 492
Query: 225 FATGS-------------IDNSI------------EKVASRICKVVR----SDIWGDDVE 255
GS +D+S+ + + +CK R +++ + +
Sbjct: 493 RVHGSAALGNLGNSYIGLVDDSLIENNCLPDLITYSTLLNGLCKAGRFAEAKNLFAEMMG 552
Query: 256 RQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGRED 315
+L+ +V ++ + F K G + A + E+ G K E+ YN++ LG ++
Sbjct: 553 EKLQPDSVAYNIFIHHFC--KQG-KISSAFRVLKDMEKKGCHKSLET-YNSLILGLGIKN 608
Query: 316 CIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCT 375
I ++DEM+ KG + T + E V++A +L + M P+V
Sbjct: 609 QIFEIHGLMDEMKEKGISPNICTYNTAIQYLCEGEKVEDATNLLDEMMQKNIAPNVFSFK 668
Query: 376 FLLRKIVVSKQLDM--RLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKA 433
+L+ DM +F V + + + + + + L++ G++ + ++L+A
Sbjct: 669 YLIEAFCKVPDFDMAQEVFETAVSICGQK-----EGLYSLMFNELLAAGQLLKATELLEA 723
Query: 434 MEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGD 493
+ + GF + + + L + + A+ + M G + +I G G+
Sbjct: 724 VLDRGFELGTFLYKDLVESLCKKDELEVASGILHKMIDRGYGFDPAALMPVIDGLGKMGN 783
Query: 494 LDKAADCFQKMVEKEGTSHAGYAID 518
+A KM+E +D
Sbjct: 784 KKEANSFADKMMEMASVGEVANKVD 808
>gi|356510681|ref|XP_003524064.1| PREDICTED: pentatricopeptide repeat-containing protein At5g18390,
mitochondrial-like [Glycine max]
Length = 450
Score = 62.0 bits (149), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 82/436 (18%), Positives = 158/436 (36%), Gaps = 53/436 (12%)
Query: 203 NKMTEKFEKEGLESDLEKLKGIFATGSID-NSIEKVASRICKVVRSDIWGDDVERQLRDL 261
+K+ + K L +L + T S + V + +VR D + +ER L L
Sbjct: 6 SKLILRHSKPRLLLNLHSITKTLTTASSSRDEYFAVIHHVSNIVRRDFY---LERTLNKL 62
Query: 262 NVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFW 321
+T + +LV V+ + P ++L FF WA + + + L R + W
Sbjct: 63 RITVTPELVFRVLRACSNNPTESLRFFNWARTHPSYSPTSLEFEQIVTTLARANTYQSMW 122
Query: 322 KVLDEMR-SKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRK 380
++ ++ + V+ + + V ++V ++ + N P
Sbjct: 123 ALIRQVTLHHRLSLSPSAVASVIEAYGDNRHVDQSVQVFNKSPLLLNCPQ---------- 172
Query: 381 IVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFI 440
T + N++L++L +++ M G
Sbjct: 173 --------------------------TLPLYNALLRSLCHNKLFHGAYALVRRMLRKGLR 206
Query: 441 ASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADC 500
+ + S GK EA F++ M G + + L++G AG ++ A
Sbjct: 207 PDKTTYAVLVNAWCSNGKLREAKLFLEEMSEKGFNPPVRGRDLLVEGLLNAGYVESAKGM 266
Query: 501 FQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNL 560
+ M+++ G + +V T ++ + C +++ V + P TY+ L+ +
Sbjct: 267 VRNMIKQGSVPDVG-TFNAVVETVSKED--VQFCVGLYHEVCALGMAPDVNTYKILVPAV 323
Query: 561 LVQRGFKDALSLLCLMKDHG---FPPFVDPFIKYVSKSGTSDDAIAFLKGMTSKRFP--- 614
+A LL + G FP P IK + + G DDA F M +K P
Sbjct: 324 SKSGMVDEAFRLLNNFIEDGHKPFPSLYAPVIKALCRRGQFDDAFCFFGDMKAKAHPPNR 383
Query: 615 ---SMSVVLCLFAAFF 627
+M + +C A F
Sbjct: 384 PLYTMLITMCGRAGKF 399
>gi|225464790|ref|XP_002268064.1| PREDICTED: pentatricopeptide repeat-containing protein At2g26790,
mitochondrial [Vitis vinifera]
Length = 817
Score = 62.0 bits (149), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 84/377 (22%), Positives = 145/377 (38%), Gaps = 45/377 (11%)
Query: 277 LGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSK-----G 331
L +EP A FF +ESGF +H+ +Y A+ VL R + +L E+ G
Sbjct: 73 LKNEPNLAWSFFTQLKESGF-QHNVDTYAALIRVLCRWRLERKLQSLLSEIVGSKESVLG 131
Query: 332 YEME------------------------METCVKVLGRFSERNMVKEAVDLYEFAMACKN 367
+++ ++ VK R M EA+D
Sbjct: 132 FDITALFDVLREGGGEVEGEHSSVLILVLDMLVKAYVRVG---MFDEAIDALFQTKRRGF 188
Query: 368 KPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGEC 427
P + C FL+ +++ ++DM + + R + G D +KAL G E
Sbjct: 189 VPHIMSCNFLMNRLIEHGKIDMAV--AIYRHLKRLGLNPNDYTYGIFIKALCRKGNFEEA 246
Query: 428 NKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKG 487
+ + MEE G ++ S L S + D E + + A+ + + ++I+G
Sbjct: 247 VDVFREMEEAGVNPNAVTCSTYIEGLCSHKRSDLGYEALRALRAANWPIDTFAYTAVIRG 306
Query: 488 HCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLK 547
C L +A D F MV EG + GY L++ YC + A +HN + +K
Sbjct: 307 FCSEMKLKEAEDVFIDMV-NEGIAPDGYIYGALIHAYCKAGNLLQAVA-LHNDMVSNGIK 364
Query: 548 PWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDP-----FIKYVSKSGTSDDAI 602
+++ L + + +D G F+D + + K G ++A+
Sbjct: 365 TNCVIVSSILQCLCEMGMASEVVDQFKEFRDSGI--FLDEVLYNIVVDALCKLGKVEEAV 422
Query: 603 AFLKGMTSKRFPSMSVV 619
L M +R S+ VV
Sbjct: 423 ELLNEMKGRRM-SLDVV 438
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/192 (22%), Positives = 85/192 (44%), Gaps = 5/192 (2%)
Query: 402 NGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDE 461
NG +++S+L+ L +G E K + G + + + L GK +E
Sbjct: 361 NGIKTNCVIVSSILQCLCEMGMASEVVDQFKEFRDSGIFLDEVLYNIVVDALCKLGKVEE 420
Query: 462 ANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLV 521
A E ++ M+ + + +LI G+C+ G L A + F++M E+ G ++LV
Sbjct: 421 AVELLNEMKGRRMSLDVVHYTTLIAGYCLQGKLVDAKNMFEEMKER-GIEPDIVTYNILV 479
Query: 522 NTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKD--- 578
+ +A + + +C+ LKP T+ +I+ L + K+A + L ++D
Sbjct: 480 GGFSRNGLKKEALELL-DCIGTQGLKPNSATHNRIIEGLCMAGKVKEAEAFLNTLEDKCL 538
Query: 579 HGFPPFVDPFIK 590
+ VD + K
Sbjct: 539 ENYSAMVDGYCK 550
Score = 45.1 bits (105), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 73/315 (23%), Positives = 131/315 (41%), Gaps = 42/315 (13%)
Query: 323 VLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIV 382
+ +EM+ +G E ++ T ++G FS + KEA++L + KP+ ++ +
Sbjct: 459 MFEEMKERGIEPDIVTYNILVGGFSRNGLKKEALELLDCIGTQGLKPNSATHNRIIEGLC 518
Query: 383 VSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGEC--NKILKAMEEGGFI 440
++ ++ K F N L D L + A++ G C N KA E +
Sbjct: 519 MAGKV------KEAEAFL---NTLEDKCLEN-YSAMVD----GYCKANFTRKAYELFSRL 564
Query: 441 ASSNM--KSKIAFRLSSA----GKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDL 494
+ + K K F+L S+ G+ D+A ++ M A + M+ LI C GD+
Sbjct: 565 SKQGILVKKKSCFKLLSSLCMEGEYDKALILLERMLALDVEPNQIMYGKLIGAFCRDGDM 624
Query: 495 DKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYE 554
+A F +VE+ G + +++N YC N + + + N ++E +KP TY
Sbjct: 625 KRAQLVFDMLVER-GITPDVITYTMMINGYCRVN-CLREARDIFNDMKERGIKPDVITYT 682
Query: 555 ELIK-----NLLVQRGFK----------DALSLLCLMKDHGFPPFVDPFIKYVS---KSG 596
++ NL + R + DA MK+ G P V + + K+
Sbjct: 683 VVLDGHSKVNLKMARSLQFSKGSEEEKMDASPFWSEMKEMGIKPDVVCYTVLIDSHCKTN 742
Query: 597 TSDDAIAFLKGMTSK 611
DAI M ++
Sbjct: 743 NLQDAINLYDEMIAR 757
>gi|357450627|ref|XP_003595590.1| hypothetical protein MTR_2g049740 [Medicago truncatula]
gi|355484638|gb|AES65841.1| hypothetical protein MTR_2g049740 [Medicago truncatula]
Length = 859
Score = 62.0 bits (149), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 74/307 (24%), Positives = 128/307 (41%), Gaps = 22/307 (7%)
Query: 323 VLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIV 382
V D++ G ++ C V+ + V A+++ E + +P+V L+ V
Sbjct: 213 VFDQIVGTGIVPDVYMCSIVVNAHCQVGRVDVAMEVLEKMVKEGLEPNVVTYNGLVNGYV 272
Query: 383 VSKQLDMRLFSKVVRVFRENG---NVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGF 439
+ D +V+R+ E G NV+T ML ++ G+M E K+L+ +EE
Sbjct: 273 --GRGDFEGVERVLRLMSERGVSRNVVTCTML---MRGYCKKGKMDEAEKLLREVEEDEL 327
Query: 440 -IASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAA 498
+ + + G+ ++A D M G V + +LIKG+C G + +A
Sbjct: 328 LVVDERVYGVLVDGYCQMGRMEDAVRIRDEMLRVGLKVNMVICNTLIKGYCKLGQVCEAE 387
Query: 499 DCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIK 558
F MV+ Y+ + L++ YC + + A + + + P TY +IK
Sbjct: 388 RVFVGMVDWNLKPDC-YSYNTLLDGYCREGKVSKAFMLCEEMLGD-GITPTVVTYNTVIK 445
Query: 559 NLLVQRGFKDALSLLCLMKDHGFPP-------FVDPFIKYVSKSGTSDDAIAFLKGMTSK 611
L+ + DAL L LM + G P +D F K G SD A+ K + +
Sbjct: 446 GLVDVGSYDDALHLWHLMVERGVTPNEISCCTMLDCFFKM----GDSDRAMMLWKEILGR 501
Query: 612 RFPSMSV 618
F +V
Sbjct: 502 GFTKSTV 508
Score = 55.5 bits (132), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 88/432 (20%), Positives = 156/432 (36%), Gaps = 68/432 (15%)
Query: 256 RQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGRED 315
+ L +L +S+ L ++ +L P L FF A ++ + SY+ + +L
Sbjct: 56 QSLHNLTFKYSDHLTDSLLRRLRLHPSACLSFFHLATQNSHYRPHSLSYSILLHILTHAR 115
Query: 316 CIDRFWKVLDEMRS-------KGYEM---------EMETCVKV----LGRFSERNMVKEA 355
VL ++ + Y + E C V + F+ER M K A
Sbjct: 116 LFPEATTVLRQLMDLHCTNNYRAYAVCNHVFSVYKEFGFCSGVFDMLMKAFAERGMTKHA 175
Query: 356 VDLYEFAMACKNKPSVNCCTFLLRKIVVSKQ--LDMRLFSKVVRVFRENGNVLTDAMLNS 413
+ +++ P + C+FLL K+V + + + +F ++V G V M +
Sbjct: 176 LYVFDEMSRIGRVPGLRSCSFLLGKLVQKGEGRVAVMVFDQIV----GTGIVPDVYMCSI 231
Query: 414 VLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASG 473
V+ A VGR+ ++L+ M + G + + + G + + M G
Sbjct: 232 VVNAHCQVGRVDVAMEVLEKMVKEGLEPNVVTYNGLVNGYVGRGDFEGVERVLRLMSERG 291
Query: 474 SDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDA 533
L++G+C G +D+A +++ E E +LV+ YC R DA
Sbjct: 292 VSRNVVTCTMLMRGYCKKGKMDEAEKLLREVEEDELLVVDERVYGVLVDGYCQMGRMEDA 351
Query: 534 --------------------------CKFVHNCVRE--------YDLKPWHTTYEELIKN 559
CK C E ++LKP +Y L+
Sbjct: 352 VRIRDEMLRVGLKVNMVICNTLIKGYCKLGQVCEAERVFVGMVDWNLKPDCYSYNTLLDG 411
Query: 560 LLVQRGFKDALSLLCLMKDHGFPPFV---DPFIKYVSKSGTSDDAIAFL-----KGMTSK 611
+ A L M G P V + IK + G+ DDA+ +G+T
Sbjct: 412 YCREGKVSKAFMLCEEMLGDGITPTVVTYNTVIKGLVDVGSYDDALHLWHLMVERGVTPN 471
Query: 612 RFPSMSVVLCLF 623
+++ C F
Sbjct: 472 EISCCTMLDCFF 483
Score = 53.1 bits (126), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 75/372 (20%), Positives = 141/372 (37%), Gaps = 53/372 (14%)
Query: 163 SSKTYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRNKMTEKFEKEGLESDLEKLK 222
S+ +N M+ + G + E + D MK+ G +++ + K G + ++K
Sbjct: 506 STVAFNTMISGLCKMGKLMEAGAVFDRMKELGLSPDEITYRTLSDGYCKNGNVQEAFQIK 565
Query: 223 GIFATGSIDNSIEKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPK 282
G+ ++ SIE S I D ++R LN D+ +V+
Sbjct: 566 GVMERQAMSASIEMYNSLI-----------DGLFKIRKLN-----DVTDLLVEM------ 603
Query: 283 KALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKV 342
++ + + +Y + S E +D+ + + EM +G+ + C K+
Sbjct: 604 ----------QTRGLSPNVVTYGTLISGWCDEQKLDKAFHLYFEMIERGFTPNVVVCSKI 653
Query: 343 LGRFSERNMVKEAV---------DLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFS 393
+ + + EA D+ C +K N T +KI + LD S
Sbjct: 654 VSSLYRDDRISEATVILDKMLDFDILAVHNKCSDKLVKNDLTLEAQKI--ADSLDK---S 708
Query: 394 KVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRL 453
+ N + N + L G++ E +L + GF+ + +
Sbjct: 709 DICNSLSNN------IVYNIAIDGLCKSGKLDEARSVLSVLMSRGFLPDNFTYCTLIHAC 762
Query: 454 SSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHA 513
S +G DEA + D M G ++ +LI G C G++D+A F K+ +K G
Sbjct: 763 SVSGNVDEAFKLRDEMLEKGLIPNITIYNALINGLCKLGNIDRAQRLFYKLYQK-GLVPN 821
Query: 514 GYAIDLLVNTYC 525
++L+ YC
Sbjct: 822 AVTYNILIGCYC 833
Score = 42.7 bits (99), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 70/337 (20%), Positives = 129/337 (38%), Gaps = 39/337 (11%)
Query: 207 EKFEKEGLESDL----EKLKGIFATGSIDNSIEKVASRICKVVRSDIWGDDVERQLRDLN 262
EK +E E +L E++ G+ G + A RI D++ R +N
Sbjct: 316 EKLLREVEEDELLVVDERVYGVLVDGYCQMGRMEDAVRI---------RDEMLRVGLKVN 366
Query: 263 VTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWK 322
+ N L+K KLG + +F + + +K D SYN + RE + + +
Sbjct: 367 MVICNTLIKGYC-KLGQVCEAERVFVGMVDWN--LKPDCYSYNTLLDGYCREGKVSKAFM 423
Query: 323 VLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPS-VNCCTFL---- 377
+ +EM G + T V+ + +A+ L+ + P+ ++CCT L
Sbjct: 424 LCEEMLGDGITPTVVTYNTVIKGLVDVGSYDDALHLWHLMVERGVTPNEISCCTMLDCFF 483
Query: 378 -----LRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILK 432
R +++ K++ R F+K F N+++ L +G++ E +
Sbjct: 484 KMGDSDRAMMLWKEILGRGFTKSTVAF------------NTMISGLCKMGKLMEAGAVFD 531
Query: 433 AMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAG 492
M+E G ++ G EA + ME +M+ SLI G
Sbjct: 532 RMKELGLSPDEITYRTLSDGYCKNGNVQEAFQIKGVMERQAMSASIEMYNSLIDGLFKIR 591
Query: 493 DLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNR 529
L+ D +M + G S L++ +C + +
Sbjct: 592 KLNDVTDLLVEM-QTRGLSPNVVTYGTLISGWCDEQK 627
>gi|224111364|ref|XP_002315827.1| predicted protein [Populus trichocarpa]
gi|222864867|gb|EEF01998.1| predicted protein [Populus trichocarpa]
Length = 472
Score = 62.0 bits (149), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 80/387 (20%), Positives = 158/387 (40%), Gaps = 50/387 (12%)
Query: 253 DVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLG 312
++E+ L L + + DLV V+ +L E K + FF WA H+ +YN M +L
Sbjct: 15 NLEKTLDQLGLELTTDLVLNVLGRLHFEEKTSFRFFMWAGHQKNYSHEPCAYNEMIDILT 74
Query: 313 REDCIDRFWKVLDEM-----RSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKN 367
R ++++ +M R+ + +E + +L ++E+ + + + +FA
Sbjct: 75 STKYKARQFRIVCDMLDYMKRNNKNVVPVEVLLTILRNYTEKYLTR----VQKFAKK--- 127
Query: 368 KPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGEC 427
++I V Q ++ F N+L DA+ L A + G
Sbjct: 128 -----------KRIRVKTQPEINAF-----------NLLLDALCKCCL-AEDAEGLFKRV 164
Query: 428 NKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKG 487
+K +N + + F + ++ M G +++ I
Sbjct: 165 KNKVK--------PDANTYNVMFFGWCRVRNPTRGMKVLEEMIQLGHTPDSFTYITAIDA 216
Query: 488 HCVAGDLDKAADCFQKMVEKEGT--SHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYD 545
C AG +++AA+ F+ M K T S +++ NR + K + + +
Sbjct: 217 FCRAGMVNEAAELFEFMRTKGSTMSSPTAKTYAIMIGALVRNNRMDECFKLLEDMINSGC 276
Query: 546 LKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFV---DPFIKYVSKSGTSDDAI 602
L P +T++ELI+ + +A L M + G+PP + + F+K + ++ S++A+
Sbjct: 277 L-PDVSTFKELIEGMCSAGKIDEAYRFLQEMGNKGYPPDIVTYNCFLKVLCENKNSEEAL 335
Query: 603 AFLKGMTSKR-FPSMSVVLCLFAAFFQ 628
+ M FPS+ L + FF+
Sbjct: 336 RLYERMIEAGCFPSVQTHNMLISMFFE 362
>gi|242067349|ref|XP_002448951.1| hypothetical protein SORBIDRAFT_05g002310 [Sorghum bicolor]
gi|241934794|gb|EES07939.1| hypothetical protein SORBIDRAFT_05g002310 [Sorghum bicolor]
Length = 799
Score = 62.0 bits (149), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 54/238 (22%), Positives = 99/238 (41%), Gaps = 6/238 (2%)
Query: 410 MLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHM 469
+ NS++ L +V + +++ M + G ++ + + L + G+ E +D M
Sbjct: 446 VFNSLVYGLCTVDKWERAEELVYEMLDQGICPNAVFFNTLICNLCNVGRVMEGRRLIDLM 505
Query: 470 EASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNR 529
E G + LI G+C+ G D+A F MV G S + L++ YCS +R
Sbjct: 506 EHVGVRPDAFSYTPLISGYCLTGRTDEAEKVFDGMVSI-GLSPTEVTYNTLLHGYCSASR 564
Query: 530 AIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPF- 588
DA +R+ + P TY ++ L + F +A L M + G + +
Sbjct: 565 IDDAYCLFREMLRK-GVTPGVVTYNTILHGLFQTKRFSEAKELYLNMINSGTKCDIYTYN 623
Query: 589 --IKYVSKSGTSDDAIAFLKGMTSKRFP-SMSVVLCLFAAFFQARRHSEAQDLLSKCP 643
+ + KS D+A + + SK ++ + A + R +A DL + P
Sbjct: 624 IILNGLCKSNCVDEAFKMFQSLCSKGLQLNIITFTIMIGALLKGGRKEDAMDLFAAIP 681
Score = 47.4 bits (111), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 34/151 (22%), Positives = 69/151 (45%), Gaps = 2/151 (1%)
Query: 297 VKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAV 356
K D +YN + + L + +C+D +K+ + SKG ++ + T ++G + ++A+
Sbjct: 615 TKCDIYTYNIILNGLCKSNCVDEAFKMFQSLCSKGLQLNIITFTIMIGALLKGGRKEDAM 674
Query: 357 DLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLK 416
DL FA N N T+ L + ++ + F + +NG MLN++++
Sbjct: 675 DL--FAAIPANGLVPNVVTYRLVAENLIEEGSLEEFDSLFSAMEKNGTAPNSQMLNALVR 732
Query: 417 ALISVGRMGECNKILKAMEEGGFIASSNMKS 447
L+ G + L ++E F ++ S
Sbjct: 733 RLLHRGDISRAGAYLSKLDERNFSVEASTTS 763
Score = 45.8 bits (107), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 67/344 (19%), Positives = 128/344 (37%), Gaps = 21/344 (6%)
Query: 321 WK----VLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTF 376
WK +L+EM ++G + + T +L + +EA ++ + KP V+
Sbjct: 285 WKEVVQMLEEMSARGLKPDCYTYGSLLNYLCKNGRCREARFFFDSMIRKGIKPKVSTYGI 344
Query: 377 LLRKIVVSKQL-DMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAME 435
L+ L +M F + + ENG + N A G + + I M
Sbjct: 345 LIHGYATKGALSEMHSF---LDLMVENGLSPDHHIFNIFFSAYAKCGMIDKAMDIFNKMR 401
Query: 436 EGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLD 495
+ G + + L G+ D+A + M G ++ SL+ G C +
Sbjct: 402 QHGLSPNVVNYGALIDALCKLGRVDDAEVKFNQMINEGVTPNIVVFNSLVYGLCTVDKWE 461
Query: 496 KAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEE 555
+A + +M++ +G + L+ C+ R ++ + + + + ++P +Y
Sbjct: 462 RAEELVYEMLD-QGICPNAVFFNTLICNLCNVGRVMEGRRLI-DLMEHVGVRPDAFSYTP 519
Query: 556 LIKNLLVQRGFKDALSLLCLMKDHGFPP---FVDPFIKYVSKSGTSDDAIAFLKGMTSKR 612
LI + +A + M G P + + + DDA + M K
Sbjct: 520 LISGYCLTGRTDEAEKVFDGMVSIGLSPTEVTYNTLLHGYCSASRIDDAYCLFREMLRKG 579
Query: 613 F-PSMSVVLCLFAAFFQARRHSEAQDLL-------SKCPRYVRN 648
P + + FQ +R SEA++L +KC Y N
Sbjct: 580 VTPGVVTYNTILHGLFQTKRFSEAKELYLNMINSGTKCDIYTYN 623
Score = 44.3 bits (103), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 53/221 (23%), Positives = 83/221 (37%), Gaps = 5/221 (2%)
Query: 382 VVSKQLDMRLFSKVVRVFRE---NGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGG 438
V+ +LF + VF++ NG + N ++ +S+G+ E ++L+ M G
Sbjct: 240 VIDGLCKAQLFDRAEGVFQQMIDNGFKPNNYTYNCLIHGYLSIGKWKEVVQMLEEMSARG 299
Query: 439 FIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAA 498
+ L G+ EA F D M G + LI G+ G L +
Sbjct: 300 LKPDCYTYGSLLNYLCKNGRCREARFFFDSMIRKGIKPKVSTYGILIHGYATKGALSEMH 359
Query: 499 DCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIK 558
MVE G S + ++ + Y +K ID + N +R++ L P Y LI
Sbjct: 360 SFLDLMVEN-GLSPDHHIFNIFFSAY-AKCGMIDKAMDIFNKMRQHGLSPNVVNYGALID 417
Query: 559 NLLVQRGFKDALSLLCLMKDHGFPPFVDPFIKYVSKSGTSD 599
L DA M + G P + F V T D
Sbjct: 418 ALCKLGRVDDAEVKFNQMINEGVTPNIVVFNSLVYGLCTVD 458
Score = 42.7 bits (99), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 66/289 (22%), Positives = 115/289 (39%), Gaps = 22/289 (7%)
Query: 365 CKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFR---ENGNVLTDAMLNSVLKALISV 421
C +K + N CT+ I++ + M F + G + +N +LK L
Sbjct: 82 CSDKVAPNLCTY---SILIGRFCRMGHLEHGFAAFGLILKTGWRMDHIAINQLLKGLCHG 138
Query: 422 GRMGEC-NKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKM 480
R+GE + +L+ M E G + + + + L + + +EA E + HM A D G +
Sbjct: 139 KRVGEAMDVLLQRMPELGCMPDTVSYTILLKGLCNEKRAEEALELL-HMMAD--DHGRRC 195
Query: 481 ------WVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDAC 534
+ +I G G +DK + F +M+++ G +++ C K + D
Sbjct: 196 PPNVVSYSIVINGFFTEGQVDKPYNLFLEMIDR-GIPPDVVTYTTVIDGLC-KAQLFDRA 253
Query: 535 KFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPP---FVDPFIKY 591
+ V + + KP + TY LI L +K+ + +L M G P + Y
Sbjct: 254 EGVFQQMIDNGFKPNNYTYNCLIHGYLSIGKWKEVVQMLEEMSARGLKPDCYTYGSLLNY 313
Query: 592 VSKSGTSDDAIAFLKGMTSKRF-PSMSVVLCLFAAFFQARRHSEAQDLL 639
+ K+G +A F M K P +S L + SE L
Sbjct: 314 LCKNGRCREARFFFDSMIRKGIKPKVSTYGILIHGYATKGALSEMHSFL 362
Score = 40.0 bits (92), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 93/489 (19%), Positives = 177/489 (36%), Gaps = 44/489 (8%)
Query: 146 EARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRNKM 205
EAR FF+ ++ K + S TY +++ G + E +D+M + G H+ N
Sbjct: 322 EARFFFDSMIRKGIKPKVS-TYGILIHGYATKGALSEMHSFLDLMVENGLSPDHHIFNIF 380
Query: 206 TEKFEKEGLESDLEKLKGIFATGSIDNSIEKVASRICKVVRSDIWGDDVERQLRDLNVTF 265
+ K G+ ID ++ DI+ + L NV
Sbjct: 381 FSAYAKCGM---------------IDKAM-------------DIFNKMRQHGLSP-NVVN 411
Query: 266 SNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLD 325
L+ + KLG + F + E V + +N++ L D +R +++
Sbjct: 412 YGALIDALC-KLGRVDDAEVKFNQMINEG--VTPNIVVFNSLVYGLCTVDKWERAEELVY 468
Query: 326 EMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSK 385
EM +G ++ V E L + +P T L+ ++
Sbjct: 469 EMLDQGICPNAVFFNTLICNLCNVGRVMEGRRLIDLMEHVGVRPDAFSYTPLISGYCLTG 528
Query: 386 QLDM--RLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASS 443
+ D ++F +V + G T+ N++L S R+ + + + M G
Sbjct: 529 RTDEAEKVFDGMVSI----GLSPTEVTYNTLLHGYCSASRIDDAYCLFREMLRKGVTPGV 584
Query: 444 NMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQK 503
+ I L + EA E +M SG+ + ++ G C + +D+A FQ
Sbjct: 585 VTYNTILHGLFQTKRFSEAKELYLNMINSGTKCDIYTYNIILNGLCKSNCVDEAFKMFQS 644
Query: 504 MVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQ 563
+ K G +++ R DA + L P TY + +NL+ +
Sbjct: 645 LCSK-GLQLNIITFTIMIGALLKGGRKEDAMDLF-AAIPANGLVPNVVTYRLVAENLIEE 702
Query: 564 RGFKDALSLLCLMKDHGFPP---FVDPFIKYVSKSGTSDDAIAFLKGMTSKRFPSMSVVL 620
++ SL M+ +G P ++ ++ + G A A+L + + F +
Sbjct: 703 GSLEEFDSLFSAMEKNGTAPNSQMLNALVRRLLHRGDISRAGAYLSKLDERNFSVEASTT 762
Query: 621 CLFAAFFQA 629
L + F +
Sbjct: 763 SLLMSIFTS 771
>gi|218195055|gb|EEC77482.1| hypothetical protein OsI_16315 [Oryza sativa Indica Group]
Length = 455
Score = 62.0 bits (149), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 77/334 (23%), Positives = 145/334 (43%), Gaps = 14/334 (4%)
Query: 282 KKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCV- 340
+ AL R E G + ++ +Y + S + +D KV DEM +KG E++ E +
Sbjct: 89 QAALDIMREMRERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKG-EVKPEAVMY 147
Query: 341 -KVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVF 399
++G + ++ + A+ LY M + ++ T+ L +V + +D R V
Sbjct: 148 NALIGGYCDQGKLDTAL-LYRDRM-VERGVAMTVATYNL--LVHALFMDGRGTEAYELVE 203
Query: 400 RENGNVLTDAML--NSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAG 457
G L + N ++ G + + +I + M G A+ + + + LS G
Sbjct: 204 EMGGKGLAPDVFTYNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTSLIYALSKKG 263
Query: 458 KKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAI 517
+ E ++ D G ++ +LI H +G++D+A + +M EK+ +
Sbjct: 264 QVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEM-EKKRIAPDDVTY 322
Query: 518 DLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMK 577
+ L+ C R +A K + + ++P TY LI ++ KDAL + M
Sbjct: 323 NTLMRGLCLLGRVDEARKLIDEMTKR-GIQPDLVTYNTLISGYSMKGDVKDALRIRNEMM 381
Query: 578 DHGFPPFV---DPFIKYVSKSGTSDDAIAFLKGM 608
+ GF P + + I+ + K+G DDA +K M
Sbjct: 382 NKGFNPTLLTYNALIQGLCKNGQGDDAENMVKEM 415
Score = 47.0 bits (110), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 52/247 (21%), Positives = 102/247 (41%), Gaps = 4/247 (1%)
Query: 288 FRWAEESGF--VKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGR 345
+ EE G + D +YN + + +E + + ++ + M +G + T ++
Sbjct: 199 YELVEEMGGKGLAPDVFTYNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTSLIYA 258
Query: 346 FSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNV 405
S++ V+E L++ A+ +P + L+ S +D R F +++ +
Sbjct: 259 LSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNID-RAF-EIMGEMEKKRIA 316
Query: 406 LTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEF 465
D N++++ L +GR+ E K++ M + G + + S G +A
Sbjct: 317 PDDVTYNTLMRGLCLLGRVDEARKLIDEMTKRGIQPDLVTYNTLISGYSMKGDVKDALRI 376
Query: 466 MDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYC 525
+ M G + + +LI+G C G D A + ++MVE T I L+
Sbjct: 377 RNEMMNKGFNPTLLTYNALIQGLCKNGQGDDAENMVKEMVENGITPDDSTYISLIEGLTT 436
Query: 526 SKNRAID 532
RAID
Sbjct: 437 EDERAID 443
Score = 46.2 bits (108), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 53/190 (27%), Positives = 78/190 (41%), Gaps = 7/190 (3%)
Query: 412 NSVLKALISVGRMGECNKILKAMEEGGFIASSNMK-SKIAFRLSSAGKKDEANEFMDHME 470
N+V+ S GR+ I++ M E G IA + + G+ DEA + D M
Sbjct: 76 NTVIAGFCSRGRVQAALDIMREMRERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEML 135
Query: 471 ASGSDVGDK-MWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNR 529
G + M+ +LI G+C G LD A +MVE+ G + +LLV+ R
Sbjct: 136 TKGEVKPEAVMYNALIGGYCDQGKLDTALLYRDRMVER-GVAMTVATYNLLVHALFMDGR 194
Query: 530 AIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPF- 588
+A + V + L P TY LI + K AL + M G V +
Sbjct: 195 GTEAYELVEE-MGGKGLAPDVFTYNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYT 253
Query: 589 --IKYVSKSG 596
I +SK G
Sbjct: 254 SLIYALSKKG 263
Score = 43.1 bits (100), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 49/118 (41%), Gaps = 4/118 (3%)
Query: 453 LSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSH 512
L SAGK A E + M + + ++I G C G + A D ++M E+ G +
Sbjct: 51 LCSAGKPARALELLRQMPRPNA----VTYNTVIAGFCSRGRVQAALDIMREMRERGGIAP 106
Query: 513 AGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDAL 570
Y +++ +C R +A K + + ++KP Y LI Q AL
Sbjct: 107 NQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCDQGKLDTAL 164
>gi|255660932|gb|ACU25635.1| pentatricopeptide repeat-containing protein [Rhaphithamnus
venustus]
Length = 484
Score = 62.0 bits (149), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 81/391 (20%), Positives = 160/391 (40%), Gaps = 49/391 (12%)
Query: 258 LRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCI 317
+R+L +F ++LV V+ + AL FFRW E S +H+ ++ + +LGR +
Sbjct: 3 IRNLVPSFDHELVYNVLHG-AKNSEHALQFFRWVERSNLFQHNRETHLKIIEILGRASKL 61
Query: 318 DRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFL 377
+ +L +M KG E + + V ++ + +V+E+V L++
Sbjct: 62 NHARCILLDMPKKGLEWDEDMWVLMIDSYGNGGIVQESVKLFQ----------------- 104
Query: 378 LRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEG 437
++D + ++ + +++ K + GR + M
Sbjct: 105 --------KMDELGVERTIKSY------------DALFKVISRRGRYMMAKRYFNKMLSE 144
Query: 438 GFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKA 497
G + + + + + +GK + AN F + M+ + ++I G+ +++A
Sbjct: 145 GIEPTRHTFNIMIWGFFLSGKVETANRFFEDMKNREITPDVITYNTMINGYYRVKKMEEA 204
Query: 498 ADCFQKMVEKEGTSHAGYAIDL--LVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEE 555
F VE +G + + L+ Y S ++ DA + V ++ Y +K TY
Sbjct: 205 EKYF---VEMKGRNIEPTVVTYTTLIKGYVSVDQVDDALRLVEE-MKGYGIKANAITYST 260
Query: 556 LIKNLLVQRGFKDALSLLCLMKDHGFPPFVDP-FIKYVS---KSGTSDDAIAFLKGMTSK 611
L+ L +A S+L M D P + F++ +S K+G D A LK M
Sbjct: 261 LLPGLCNAEKMSEARSILKEMVDKYIAPTDNSIFMRLISGQCKAGNLDAAADVLKAMIRL 320
Query: 612 RFPSMSVVL-CLFAAFFQARRHSEAQDLLSK 641
P+ + L + +A ++ +A LL K
Sbjct: 321 SVPTEAGHYGVLIENYCKAGQYDQAVKLLDK 351
Score = 48.5 bits (114), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 106/499 (21%), Positives = 200/499 (40%), Gaps = 83/499 (16%)
Query: 128 FTHEMVLKVLKNLESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLV 187
F HE+V VL ++S + A +FF WV E L L+I+ + G +
Sbjct: 10 FDHELVYNVLHGAKNS-EHALQFFRWV---ERSNLFQHNRETHLKIIEILGRASKL---- 61
Query: 188 DVMKKKGYGVASHVRNKMTEKFEKEGLESDLEK---LKGIFATGSIDNSIEKVASRICKV 244
+H R + + K+GLE D + + + G I K+ ++ ++
Sbjct: 62 -----------NHARCILLD-MPKKGLEWDEDMWVLMIDSYGNGGIVQESVKLFQKMDEL 109
Query: 245 VRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSY 304
VER ++ + F V+ + G F + E ++ ++
Sbjct: 110 --------GVERTIKSYDALFK------VISRRGRYMMAKRYFNKMLSEG--IEPTRHTF 153
Query: 305 NAMA---SVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEF 361
N M + G+ + +RF+ ++M+++ ++ T ++ + ++EA + Y
Sbjct: 154 NIMIWGFFLSGKVETANRFF---EDMKNREITPDVITYNTMINGYYRVKKMEEA-EKYFV 209
Query: 362 AMACKN-KPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALIS 420
M +N +P+V T L++ V Q+D L ++V + G +++L L +
Sbjct: 210 EMKGRNIEPTVVTYTTLIKGYVSVDQVDDAL--RLVEEMKGYGIKANAITYSTLLPGLCN 267
Query: 421 VGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSS----AGKKDEANEFMDHMEASGSDV 476
+M E ILK M + +IA ++ + I RL S AG D A + + M
Sbjct: 268 AEKMSEARSILKEMVDK-YIAPTD--NSIFMRLISGQCKAGNLDAAADVLKAMIRLSVPT 324
Query: 477 GDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKF 536
+ LI+ +C AG D+A K++EK D+++ + + A
Sbjct: 325 EAGHYGVLIENYCKAGQYDQAVKLLDKLIEK----------DIILRPQSTLHMESSA--- 371
Query: 537 VHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPFIKYVSKSG 596
+N + Y T E + L++ G +D +L L++ H S+ G
Sbjct: 372 -YNPLIGYLCNNGQTAKAEALVRQLMKLGVQDPTALNTLIRGH-------------SQEG 417
Query: 597 TSDDAIAFLKGMTSKRFPS 615
+ D A LK M ++ S
Sbjct: 418 SPDSAFELLKIMLRRKVDS 436
>gi|356499705|ref|XP_003518677.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g02420-like [Glycine max]
Length = 500
Score = 62.0 bits (149), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 83/392 (21%), Positives = 150/392 (38%), Gaps = 21/392 (5%)
Query: 238 ASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKL---GDEPKKALIFFRWAEES 294
++ ++ S + +++ L+ V SND++ V+ ++ P + L FFR+
Sbjct: 34 VQKVFGILSSTSTPEQLKQSLKSSGVFLSNDVIDQVLKRVRFSHGNPSQTLEFFRYTGRR 93
Query: 295 GFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYE-MEMETCVKVLGRFSERNMVK 353
H S + M +LGR + W++L E R K + T + VLGR ++ V+
Sbjct: 94 KGFYHSSFSLDTMLYILGRSRMFGQVWELLIEARRKDQTAITARTVMVVLGRIAKVCSVR 153
Query: 354 EAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQL-DMR-LFSKVVRVFRENGNVLTDAML 411
+ V+ + + NC LLR + K + D R ++ + FR N
Sbjct: 154 QTVESFRKFRKLVQEFDTNCFNALLRTLCQEKSMADARNVYHSLKHRFRPNLQTFN---- 209
Query: 412 NSVLKALISVGRMGE-CNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHME 470
L+S + E + K M+E G + + + ++A + +D M
Sbjct: 210 -----ILLSGWKTPEDADLFFKEMKEMGVTPDVVTYNSLMDVYCKGREIEKAYKMLDEMR 264
Query: 471 ASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRA 530
+ +I G + G DKA + ++M E G A + + +C R
Sbjct: 265 DQDFSPDVITYTCIIGGLGLIGQPDKARNVLKEMKEY-GCYPDAAAYNAAIRNFCIAKRL 323
Query: 531 IDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDP--- 587
DA V V + L P TTY + + + ++ M G P
Sbjct: 324 GDAHGLVEEMVTK-GLSPNATTYNLFFRVFYWSNDLQSSWNMYQRMMVEGCLPNTQSCMF 382
Query: 588 FIKYVSKSGTSDDAIAFLKGMTSKRFPSMSVV 619
I+ + + A+ F M K F S ++V
Sbjct: 383 LIRLFRRHEKVEMALQFWGDMVEKGFGSYTLV 414
>gi|242067062|ref|XP_002454820.1| hypothetical protein SORBIDRAFT_04g038070 [Sorghum bicolor]
gi|241934651|gb|EES07796.1| hypothetical protein SORBIDRAFT_04g038070 [Sorghum bicolor]
Length = 600
Score = 62.0 bits (149), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 71/293 (24%), Positives = 121/293 (41%), Gaps = 7/293 (2%)
Query: 276 KLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEME 335
K GD + + R ++ V D SYN + ++ ++ V D M +G +
Sbjct: 196 KAGDAARAEALVTRM--DAAGVPLDRFSYNTVIALYCKKGMRYEAMCVRDRMDKEGIRAD 253
Query: 336 METCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKV 395
T ++ + VKEA L+ A + P T L+ + ++ + K+
Sbjct: 254 TVTWNSLIHGLCKYGRVKEAAQLFTEMAAAQATPDNVTYTTLIDGYCRAGNIEEAV--KL 311
Query: 396 VRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSS 455
G + A N++L+ L G+M E N++L M+E A + +
Sbjct: 312 RGEMEATGMLPGVATYNAILRKLCEDGKMKEVNQLLNEMDERKVQADHVTCNTLINAYCK 371
Query: 456 AGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGY 515
G A + M SG + + +LI G C A +LD+A + F +MV+ G S
Sbjct: 372 RGHMTSACKVKKKMMESGLQLNQFTYKALIHGFCKAKELDEAKEAFFQMVD-AGFSPNYS 430
Query: 516 AIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKD 568
LV+ +C KN A DA + + + + L P Y LI+ L ++G D
Sbjct: 431 VFSWLVDGFCKKNNA-DAVLLIPDELMKRGLPPDKAVYRSLIRR-LCRKGLVD 481
Score = 45.8 bits (107), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 65/310 (20%), Positives = 109/310 (35%), Gaps = 44/310 (14%)
Query: 322 KVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKI 381
+V D+MR++G + C +L + M A +++ S + +L
Sbjct: 135 RVFDQMRARGLAPDAHACTALLTALARARMTATARRVFDEMARAGLAVSTHVYNAMLH-- 192
Query: 382 VVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIA 441
V K D +V G L N+V+ G E + M++ G A
Sbjct: 193 VCLKAGDAARAEALVTRMDAAGVPLDRFSYNTVIALYCKKGMRYEAMCVRDRMDKEGIRA 252
Query: 442 SSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAAD-- 499
+ + + L G+ EA + M A+ + + + +LI G+C AG++++A
Sbjct: 253 DTVTWNSLIHGLCKYGRVKEAAQLFTEMAAAQATPDNVTYTTLIDGYCRAGNIEEAVKLR 312
Query: 500 -----------------CFQKMVE--------------KEGTSHAGYAI-DLLVNTYCSK 527
+K+ E E A + + L+N YC +
Sbjct: 313 GEMEATGMLPGVATYNAILRKLCEDGKMKEVNQLLNEMDERKVQADHVTCNTLINAYCKR 372
Query: 528 NRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPP---- 583
ACK V + E L+ TY+ LI + +A M D GF P
Sbjct: 373 GHMTSACK-VKKKMMESGLQLNQFTYKALIHGFCKAKELDEAKEAFFQMVDAGFSPNYSV 431
Query: 584 ---FVDPFIK 590
VD F K
Sbjct: 432 FSWLVDGFCK 441
>gi|302794530|ref|XP_002979029.1| hypothetical protein SELMODRAFT_109908 [Selaginella moellendorffii]
gi|300153347|gb|EFJ19986.1| hypothetical protein SELMODRAFT_109908 [Selaginella moellendorffii]
Length = 500
Score = 62.0 bits (149), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 74/340 (21%), Positives = 137/340 (40%), Gaps = 8/340 (2%)
Query: 303 SYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFA 362
+Y+++ L +E + +KVL+EM + G ++ V+ F+ N +++A ++Y+
Sbjct: 12 TYSSIIKSLVKEAKPEESYKVLEEMMAAGCNPDVFAFNGVMQGFARSNNMEKAREVYQHM 71
Query: 363 MACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVG 422
+ KP L+ + +LD L K++ G + +S+++AL
Sbjct: 72 VESGYKPDNVSYHILIHGLAKIGKLDESL--KILSEMVMRGQTPSMQAYSSLVRALAKAR 129
Query: 423 RMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWV 482
R+ + + M GG M ++ L AGK +A+E M G ++
Sbjct: 130 RVDHASSLFDEMIRGGHHPDRLMFYELILGLCQAGKVKDASERFKQMPKHGCQPNVPVYN 189
Query: 483 SLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVR 542
L+ G C +G L++A F +M + S + L++ C R + CK +R
Sbjct: 190 VLLHGLCSSGQLEQANTLFAEM-KSHSCSPDVVTYNTLLDAVCKARRVEEGCKLFE-AMR 247
Query: 543 EYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPFIKYVSKSGTSDDAI 602
P T+ LI L + AL + M + G P + +S ++ I
Sbjct: 248 AAGYVPNVITFSTLIHGLCRTGELEKALEVFGSMLEAGCKPNKYTYTTLISGLCRAEKVI 307
Query: 603 A---FLKGMTSKRFPSMSVVL-CLFAAFFQARRHSEAQDL 638
+ MT P +V L A + + EA+ L
Sbjct: 308 QARELFEKMTQACIPPDAVAYNSLIAGYCKRGSMDEAEKL 347
Score = 58.9 bits (141), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 70/316 (22%), Positives = 133/316 (42%), Gaps = 10/316 (3%)
Query: 303 SYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFA 362
+Y+++ L + +D + DEM G+ + +++ + VK+A + ++
Sbjct: 117 AYSSLVRALAKARRVDHASSLFDEMIRGGHHPDRLMFYELILGLCQAGKVKDASERFKQM 176
Query: 363 MACKNKPSVNCCTFLLRKIVVSKQLDM--RLFSKVVRVFRENGNVLTDAMLNSVLKALIS 420
+P+V LL + S QL+ LF+++ + + +V+T N++L A+
Sbjct: 177 PKHGCQPNVPVYNVLLHGLCSSGQLEQANTLFAEM-KSHSCSPDVVT---YNTLLDAVCK 232
Query: 421 VGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKM 480
R+ E K+ +AM G++ + S + L G+ ++A E M +G
Sbjct: 233 ARRVEEGCKLFEAMRAAGYVPNVITFSTLIHGLCRTGELEKALEVFGSMLEAGCKPNKYT 292
Query: 481 WVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNC 540
+ +LI G C A + +A + F+KM + A A + L+ YC + +A K
Sbjct: 293 YTTLISGLCRAEKVIQARELFEKMTQACIPPDA-VAYNSLIAGYCKRGSMDEAEKLYREM 351
Query: 541 VREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPF---IKYVSKSGT 597
L+P T+ LI A L+ M G + I +S++
Sbjct: 352 SGGAGLQPTIVTFNTLIDGFCKLGKLGRANELVAEMGTKGLAADSCTYRILIAGLSRATK 411
Query: 598 SDDAIAFLKGMTSKRF 613
D+A+ K M K+F
Sbjct: 412 LDEALEVYKQMREKKF 427
Score = 41.2 bits (95), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 45/237 (18%), Positives = 94/237 (39%), Gaps = 34/237 (14%)
Query: 300 DESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLY 359
D +YN + + + ++ K+ + MR+ GY + T ++ +++A++++
Sbjct: 219 DVVTYNTLLDAVCKARRVEEGCKLFEAMRAAGYVPNVITFSTLIHGLCRTGELEKALEVF 278
Query: 360 EFAMACKNKPSVNCCTFLL------RKIVVSKQLDMRLFSKVV----------------- 396
+ KP+ T L+ K++ +++L ++ +
Sbjct: 279 GSMLEAGCKPNKYTYTTLISGLCRAEKVIQARELFEKMTQACIPPDAVAYNSLIAGYCKR 338
Query: 397 -------RVFRE----NGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNM 445
+++RE G T N+++ +G++G N+++ M G A S
Sbjct: 339 GSMDEAEKLYREMSGGAGLQPTIVTFNTLIDGFCKLGKLGRANELVAEMGTKGLAADSCT 398
Query: 446 KSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQ 502
+ LS A K DEA E M + VS + G C G++D+A F+
Sbjct: 399 YRILIAGLSRATKLDEALEVYKQMREKKFLLDPVSCVSFVGGLCKTGNIDQAYAVFE 455
>gi|302806388|ref|XP_002984944.1| hypothetical protein SELMODRAFT_121294 [Selaginella moellendorffii]
gi|300147530|gb|EFJ14194.1| hypothetical protein SELMODRAFT_121294 [Selaginella moellendorffii]
Length = 468
Score = 62.0 bits (149), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 77/336 (22%), Positives = 134/336 (39%), Gaps = 8/336 (2%)
Query: 283 KALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKV 342
KAL F+ + V+ D +YN + S L + K+L EMR K + T +
Sbjct: 63 KALDLFQSMKREKRVEPDRWTYNTLISGLCSSGNTEGARKLLSEMRDKNIAANVFTYSSI 122
Query: 343 LGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFREN 402
+ + +E+ + E MA P V +++ S +M +V + E+
Sbjct: 123 IKSLVKEAKPEESYKVLEEMMAAGCNPDVFAFNGVMQGFARSN--NMEKAREVYQHMVES 180
Query: 403 GNVLTDAMLNSVLKALISVGRMGECNKILK--AMEEGGFIASSNMKSKIAFRLSSAGKKD 460
G + + ++ L +G++ E KIL AM G++ + S + L G+ +
Sbjct: 181 GYKPDNVSYHILIHGLAKIGKLDESLKILSEMAMRAAGYVPNVITFSTLIHGLCRTGELE 240
Query: 461 EANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLL 520
+A E M +G + +LI G C A + +A + F+KM + A A + L
Sbjct: 241 KALEVFGSMLEAGCKPNKYTYTTLIAGLCRAEKVIQARELFEKMTQACIPPDA-VAYNSL 299
Query: 521 VNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHG 580
+ YC + +A K L+P T+ LI A L+ M G
Sbjct: 300 IAGYCKRGSMDEAEKLYREMSGGAGLQPTIVTFNTLIDGFCKLGKLGRANELVAEMGTKG 359
Query: 581 FPPFVDPF---IKYVSKSGTSDDAIAFLKGMTSKRF 613
+ I +S++ D+A+ K M K+F
Sbjct: 360 LAADTCTYRILIAGLSRATKLDEALEVYKQMREKKF 395
Score = 60.1 bits (144), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 73/345 (21%), Positives = 144/345 (41%), Gaps = 13/345 (3%)
Query: 303 SYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFA 362
+Y+++ L +E + +KVL+EM + G ++ V+ F+ N +++A ++Y+
Sbjct: 118 TYSSIIKSLVKEAKPEESYKVLEEMMAAGCNPDVFAFNGVMQGFARSNNMEKAREVYQHM 177
Query: 363 MACKNKPSVNCCTFLLRKIVVSKQLD--MRLFSKVVRVFRENGNVLTDAMLNSVLKALIS 420
+ KP L+ + +LD +++ S++ R G V ++++ L
Sbjct: 178 VESGYKPDNVSYHILIHGLAKIGKLDESLKILSEM--AMRAAGYVPNVITFSTLIHGLCR 235
Query: 421 VGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKM 480
G + + ++ +M E G + + + L A K +A E + M +
Sbjct: 236 TGELEKALEVFGSMLEAGCKPNKYTYTTLIAGLCRAEKVIQARELFEKMTQACIPPDAVA 295
Query: 481 WVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNC 540
+ SLI G+C G +D+A +++M G + L++ +C + A + V
Sbjct: 296 YNSLIAGYCKRGSMDEAEKLYREMSGGAGLQPTIVTFNTLIDGFCKLGKLGRANELVAE- 354
Query: 541 VREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDP-----FIKYVSKS 595
+ L TY LI L +AL + M++ F +DP F+ + K+
Sbjct: 355 MGTKGLAADTCTYRILIAGLSRATKLDEALEVYKQMREKKF--LLDPVSCVSFVGGLCKT 412
Query: 596 GTSDDAIAFLKGM-TSKRFPSMSVVLCLFAAFFQARRHSEAQDLL 639
G D A A + S P+ L + + R +AQ L+
Sbjct: 413 GNIDQAYAVFEATRKSGAVPNPETFRILSESLIKLGRVEDAQKLM 457
Score = 44.3 bits (103), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 55/257 (21%), Positives = 107/257 (41%), Gaps = 37/257 (14%)
Query: 282 KKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEM--RSKGYEMEMETC 339
+KA ++ ESG+ K D SY+ + L + +D K+L EM R+ GY + T
Sbjct: 168 EKAREVYQHMVESGY-KPDNVSYHILIHGLAKIGKLDESLKILSEMAMRAAGYVPNVITF 226
Query: 340 VKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLL------RKIVVSKQL------ 387
++ +++A++++ + KP+ T L+ K++ +++L
Sbjct: 227 STLIHGLCRTGELEKALEVFGSMLEAGCKPNKYTYTTLIAGLCRAEKVIQARELFEKMTQ 286
Query: 388 -----DMRLFSKVV-------------RVFRE----NGNVLTDAMLNSVLKALISVGRMG 425
D ++ ++ +++RE G T N+++ +G++G
Sbjct: 287 ACIPPDAVAYNSLIAGYCKRGSMDEAEKLYREMSGGAGLQPTIVTFNTLIDGFCKLGKLG 346
Query: 426 ECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLI 485
N+++ M G A + + LS A K DEA E M + VS +
Sbjct: 347 RANELVAEMGTKGLAADTCTYRILIAGLSRATKLDEALEVYKQMREKKFLLDPVSCVSFV 406
Query: 486 KGHCVAGDLDKAADCFQ 502
G C G++D+A F+
Sbjct: 407 GGLCKTGNIDQAYAVFE 423
>gi|357494039|ref|XP_003617308.1| Auxin response factor [Medicago truncatula]
gi|355518643|gb|AET00267.1| Auxin response factor [Medicago truncatula]
Length = 948
Score = 62.0 bits (149), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 89/390 (22%), Positives = 165/390 (42%), Gaps = 26/390 (6%)
Query: 262 NVTFSNDLVK-FVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRF 320
N N L+ +VV +E K L ++ +GF + D ++N M L ++ +
Sbjct: 335 NTVLYNTLINGYVVSGRFEEAKDLL--YKNMVIAGF-EPDAFTFNIMIDGLCKKGYLVSA 391
Query: 321 WKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACK----NKPSVNCCTF 376
+ LDEM KG+E + T ++ F ++ +EA + +M+ K N NC
Sbjct: 392 LEFLDEMVKKGFEPNVITYTILIDGFCKQGHFEEASKVVN-SMSAKGLSLNTVGYNCLIG 450
Query: 377 LL---RKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKA 433
L KI + Q+ + SK + ++ T NS++ L +M E + +
Sbjct: 451 ALCKDGKIQDALQMYGEMSSKGCK-----PDIYT---FNSLIYGLCKNDKMEEALGLYRD 502
Query: 434 MEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGD 493
M G IA++ + + +A++ + M G + + + LIK C G
Sbjct: 503 MLLEGVIANTVTYNTLIHAFLRLELIQQADKLVGEMRFRGCPLDNITYNGLIKALCKTGA 562
Query: 494 LDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTY 553
+K ++M +E + ++L+N++C + DA +F+ + ++ L P TY
Sbjct: 563 TEKCLGLIEQMFGEEIFPSIN-SCNILINSFCRTGKVNDALQFLRDMIQR-GLTPDIVTY 620
Query: 554 EELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPFIKYVSK---SGTSDDAIAFL-KGMT 609
LI L F++AL+L ++ G P + +S+ G +DA L KG++
Sbjct: 621 NSLINGLCKMGRFQEALNLFNGLQAKGIHPDAVTYNTLISRYCYEGLFNDACQLLFKGVS 680
Query: 610 SKRFPSMSVVLCLFAAFFQARRHSEAQDLL 639
+ P+ L F + SE +L
Sbjct: 681 NGFIPNEITWSILINYFVKNNSDSEQFTIL 710
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 69/297 (23%), Positives = 124/297 (41%), Gaps = 14/297 (4%)
Query: 303 SYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFA 362
YN + L ++ I ++ EM SKG + ++ T ++ + + ++EA+ LY
Sbjct: 444 GYNCLIGALCKDGKIQDALQMYGEMSSKGCKPDIYTFNSLIYGLCKNDKMEEALGLYRDM 503
Query: 363 M---ACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALI 419
+ N + N ++ + +Q D K+V R G L + N ++KAL
Sbjct: 504 LLEGVIANTVTYNTLIHAFLRLELIQQAD-----KLVGEMRFRGCPLDNITYNGLIKALC 558
Query: 420 SVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDK 479
G +C +++ M S N + + GK ++A +F+ M G
Sbjct: 559 KTGATEKCLGLIEQMFGEEIFPSINSCNILINSFCRTGKVNDALQFLRDMIQRGLTPDIV 618
Query: 480 MWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHN 539
+ SLI G C G +A + F + + +G + L++ YC + DAC+ +
Sbjct: 619 TYNSLINGLCKMGRFQEALNLFNGL-QAKGIHPDAVTYNTLISRYCYEGLFNDACQLLFK 677
Query: 540 CVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPFIKYVSKSG 596
V P T+ LI N V+ D+ LM + GF ++ I++VS G
Sbjct: 678 GVSN-GFIPNEITWSILI-NYFVKNN-SDSEQFTILMGNWGF--WLAAIIRHVSSIG 729
Score = 59.3 bits (142), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 83/372 (22%), Positives = 148/372 (39%), Gaps = 26/372 (6%)
Query: 252 DDVERQLRDLNVTFSNDLVKFVVDKLGDE--PKKA--LIFFRWAE---ESGFVKHDESSY 304
D + +Q++D F L ++ G P +A L+ W E F SY
Sbjct: 114 DKLLKQMKDEGCVFKESLFILIMRYYGKAGLPGQATRLLLDMWGVYCFEPTF-----KSY 168
Query: 305 NAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMA 364
N + +L +C V +M S+G + T V+ F N V A L
Sbjct: 169 NVVLEILVAGNCPKVAPNVFYDMLSRGISPTVYTFGVVMKAFCMVNEVDSACSLLRDMTK 228
Query: 365 CKNKPSVNCCTFLLRKIVVSKQLD--MRLFSKVVRVFRENGNVLTDAMLNSVLKALISVG 422
P+ L+ + + +++ M+L ++ + E +V T N V+ L G
Sbjct: 229 HGCVPNSIIYQMLIHALSENNRVNEAMKLLEEMFLMGCEP-DVQT---FNDVIHGLCKAG 284
Query: 423 RMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWV 482
R+ E K+ M F A + ++ + L GK DEA + + + ++
Sbjct: 285 RIHEAAKLHDRMLLRDFTADALIQGYLMHGLCRMGKVDEARAMLSKIPNPNT----VLYN 340
Query: 483 SLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVR 542
+LI G+ V+G ++A D K + G + +++++ C K + A +F+ V+
Sbjct: 341 TLINGYVVSGRFEEAKDLLYKNMVIAGFEPDAFTFNIMIDGLCKKGYLVSALEFLDEMVK 400
Query: 543 EYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFV---DPFIKYVSKSGTSD 599
+ +P TY LI Q F++A ++ M G + I + K G
Sbjct: 401 K-GFEPNVITYTILIDGFCKQGHFEEASKVVNSMSAKGLSLNTVGYNCLIGALCKDGKIQ 459
Query: 600 DAIAFLKGMTSK 611
DA+ M+SK
Sbjct: 460 DALQMYGEMSSK 471
Score = 39.7 bits (91), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 62/327 (18%), Positives = 134/327 (40%), Gaps = 13/327 (3%)
Query: 166 TYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRNKMTEKFEKEG-LESDLEKLKGI 224
T+N+M+ + G + +D M KKG+ + + F K+G E + + +
Sbjct: 374 TFNIMIDGLCKKGYLVSALEFLDEMVKKGFEPNVITYTILIDGFCKQGHFEEASKVVNSM 433
Query: 225 FATGSIDNSI--EKVASRICKVVRSD----IWGDDVERQLRDLNVTFSNDLVKFVVDKLG 278
A G N++ + +CK + ++G+ + + TF N L+ +
Sbjct: 434 SAKGLSLNTVGYNCLIGALCKDGKIQDALQMYGEMSSKGCKPDIYTF-NSLIYGLCKN-- 490
Query: 279 DEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMET 338
D+ ++AL +R G + + +YN + R + I + K++ EMR +G ++ T
Sbjct: 491 DKMEEALGLYRDMLLEGVIA-NTVTYNTLIHAFLRLELIQQADKLVGEMRFRGCPLDNIT 549
Query: 339 CVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRV 398
++ + ++ + L E + PS+N C L+ + +++ L + +R
Sbjct: 550 YNGLIKALCKTGATEKCLGLIEQMFGEEIFPSINSCNILINSFCRTGKVNDAL--QFLRD 607
Query: 399 FRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGK 458
+ G NS++ L +GR E + ++ G + + + R G
Sbjct: 608 MIQRGLTPDIVTYNSLINGLCKMGRFQEALNLFNGLQAKGIHPDAVTYNTLISRYCYEGL 667
Query: 459 KDEANEFMDHMEASGSDVGDKMWVSLI 485
++A + + ++G + W LI
Sbjct: 668 FNDACQLLFKGVSNGFIPNEITWSILI 694
>gi|449511317|ref|XP_004163923.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g02420-like [Cucumis sativus]
Length = 495
Score = 62.0 bits (149), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 72/323 (22%), Positives = 136/323 (42%), Gaps = 35/323 (10%)
Query: 225 FATGSIDNSIEKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKL---GDEP 281
F++ + + S+ + + +++ + D++ L V SN+L+ V+ ++ P
Sbjct: 29 FSSSTDNQSLHQNIETVFRIITTSSSSTDMKHSLESSRVFLSNELIDGVLKRVRFSHGNP 88
Query: 282 KKALIFFRW-AEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEM-EMETC 339
+AL FF + A+ GF H S + M +LGR D+ W VL +++ K + + T
Sbjct: 89 LQALEFFNYTAKRRGFY-HTSFSVDTMLYILGRSRKFDKIWDVLLDVKFKDPSLISLRTV 147
Query: 340 VKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQL-DMR-LFSKVVR 397
+ VLGR ++ V++ V+ + + V C LLR + K + D R ++ +
Sbjct: 148 MVVLGRIAKVCSVRQTVESFRKFKKFVPEFDVTCFNALLRTLCQEKSMMDARNVYHGLKS 207
Query: 398 VFREN---GNVLTDAMLNS-----VLKALISVG-------------------RMGECNKI 430
+FR N N+L +S +I +G M + K+
Sbjct: 208 MFRPNLQTFNILLSGWKSSEEAEGFFDEMIEMGVKPDVVSYNCLVDVYCKNREMDKAFKV 267
Query: 431 LKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCV 490
+ M + A + I L G+ D+A + M+ G + + I+ C+
Sbjct: 268 VGKMRDEDIPADVITYTSIIGGLGLVGQPDKARNILKEMKEYGCYPDVAAYNATIRNFCI 327
Query: 491 AGDLDKAADCFQKMVEKEGTSHA 513
A L +A D +MV K + +A
Sbjct: 328 AKRLHEAFDLLDEMVNKGLSPNA 350
>gi|449466251|ref|XP_004150840.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g02420-like [Cucumis sativus]
Length = 495
Score = 62.0 bits (149), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 72/323 (22%), Positives = 136/323 (42%), Gaps = 35/323 (10%)
Query: 225 FATGSIDNSIEKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKL---GDEP 281
F++ + + S+ + + +++ + D++ L V SN+L+ V+ ++ P
Sbjct: 29 FSSSTDNQSLHQNIETVFRIITTSSSSTDMKHSLESSRVFLSNELIDGVLKRVRFSHGNP 88
Query: 282 KKALIFFRW-AEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEM-EMETC 339
+AL FF + A+ GF H S + M +LGR D+ W VL +++ K + + T
Sbjct: 89 LQALEFFNYTAKRRGFY-HTSFSVDTMLYILGRSRKFDKIWDVLLDVKFKDPSLISLRTV 147
Query: 340 VKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQL-DMR-LFSKVVR 397
+ VLGR ++ V++ V+ + + V C LLR + K + D R ++ +
Sbjct: 148 MVVLGRIAKVCSVRQTVESFRKFKKFVPEFDVTCFNALLRTLCQEKSMMDARNVYHGLKS 207
Query: 398 VFREN---GNVLTDAMLNS-----VLKALISVG-------------------RMGECNKI 430
+FR N N+L +S +I +G M + K+
Sbjct: 208 MFRPNLQTFNILLSGWKSSEEAEGFFDEMIEMGVKPDVVSYNCLVDVYCKNREMDKAFKV 267
Query: 431 LKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCV 490
+ M + A + I L G+ D+A + M+ G + + I+ C+
Sbjct: 268 VGKMRDEDIPADVITYTSIIGGLGLVGQPDKARNILKEMKEYGCYPDVAAYNATIRNFCI 327
Query: 491 AGDLDKAADCFQKMVEKEGTSHA 513
A L +A D +MV K + +A
Sbjct: 328 AKRLHEAFDLLDEMVNKGLSPNA 350
>gi|47550658|dbj|BAD20284.1| hypothetical protein [Oryza sativa Indica Group]
Length = 791
Score = 62.0 bits (149), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 80/366 (21%), Positives = 144/366 (39%), Gaps = 48/366 (13%)
Query: 279 DEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMET 338
++PK+A+ F + G V+ D +YN++ L + K+ D M +G E ++ T
Sbjct: 280 EQPKEAIGFLKKMRSDG-VEPDVVTYNSLMDYLCKNGRSTEARKIFDSMTKRGLEPDIAT 338
Query: 339 CVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLD--MRLFSKVV 396
+L ++ + + E L + + P + L+ +++D M +FSK +
Sbjct: 339 YCTLLQGYATKGALVEMHALLDLMVRNGIHPDHHVFNILICAYAKQEKVDEAMLVFSK-M 397
Query: 397 RVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSA 456
R N NV+T A+I + L +
Sbjct: 398 RQHGLNPNVVT-------YGAVIGI-------------------------------LCKS 419
Query: 457 GKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYA 516
G D+A + + M G ++ SLI C+ DKA + +M+++ G
Sbjct: 420 GSVDDAMLYFEQMIDEGLTPNIIVYTSLIHSLCIFDKWDKAEELILEMLDR-GICLNTIF 478
Query: 517 IDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLM 576
+ +++++C + R I++ K VR +KP TY LI + +A LL M
Sbjct: 479 FNSIIHSHCKEGRVIESEKLFDLMVR-IGVKPNVITYSTLIDGYCLAGKMDEATKLLSSM 537
Query: 577 KDHGFPP---FVDPFIKYVSKSGTSDDAIAFLKGMTSKRF-PSMSVVLCLFAAFFQARRH 632
G P + I + DDA+A K M S P++ + F RR
Sbjct: 538 FSVGMKPDCVTYNTLINGYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLFHTRRT 597
Query: 633 SEAQDL 638
+ A++L
Sbjct: 598 AAAKEL 603
Score = 46.2 bits (108), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 51/222 (22%), Positives = 89/222 (40%), Gaps = 12/222 (5%)
Query: 412 NSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEA 471
+S++ AL M + ++L M + G + + + I S+ + EA F+ M +
Sbjct: 235 SSIIAALCKGQAMDKAMEVLTTMVKNGVMPNCMTYNSILHGYCSSEQPKEAIGFLKKMRS 294
Query: 472 SGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAI 531
G + + SL+ C G +A F M K G L+ Y +K +
Sbjct: 295 DGVEPDVVTYNSLMDYLCKNGRSTEARKIFDSMT-KRGLEPDIATYCTLLQGYATKGALV 353
Query: 532 DACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPF--- 588
+ + VR + P H + LI Q +A+ + M+ HG P V +
Sbjct: 354 EMHALLDLMVRN-GIHPDHHVFNILICAYAKQEKVDEAMLVFSKMRQHGLNPNVVTYGAV 412
Query: 589 IKYVSKSGTSDDAIAFLKGMTSKRFPSMSVV-------LCLF 623
I + KSG+ DDA+ + + M + +V LC+F
Sbjct: 413 IGILCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHSLCIF 454
Score = 38.9 bits (89), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 58/232 (25%), Positives = 93/232 (40%), Gaps = 21/232 (9%)
Query: 453 LSSAGKKDEANEFMDHMEA---SGSDVGDKM-WVSLIKGHCVAGDLDKAADCFQKMVEKE 508
L + EA E + HM A G D + + ++I G GD DKA + +M+++
Sbjct: 168 LCDENRSQEALELL-HMMADDRGGGSAPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRR 226
Query: 509 GTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKD 568
S ++ C K +A+D V + + + P TY ++ K+
Sbjct: 227 -ISPDVVTYSSIIAALC-KGQAMDKAMEVLTTMVKNGVMPNCMTYNSILHGYCSSEQPKE 284
Query: 569 ALSLLCLMKDHGFPPFV---DPFIKYVSKSGTSDDAIAFLKGMTSKRF-PSMSVVLCLFA 624
A+ L M+ G P V + + Y+ K+G S +A MT + P ++ L
Sbjct: 285 AIGFLKKMRSDGVEPDVVTYNSLMDYLCKNGRSTEARKIFDSMTKRGLEPDIATYCTLLQ 344
Query: 625 AFFQARRHSEAQDLLSKCPRYVRN--HAD--VLNLL---YSKKSGGDSAPAV 669
+ E LL VRN H D V N+L Y+K+ D A V
Sbjct: 345 GYATKGALVEMHALLD---LMVRNGIHPDHHVFNILICAYAKQEKVDEAMLV 393
>gi|225445998|ref|XP_002267263.1| PREDICTED: pentatricopeptide repeat-containing protein At2g18940
[Vitis vinifera]
gi|297735424|emb|CBI17864.3| unnamed protein product [Vitis vinifera]
Length = 821
Score = 62.0 bits (149), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 63/308 (20%), Positives = 127/308 (41%), Gaps = 12/308 (3%)
Query: 282 KKALIFFRWAEESGFVKH---DESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMET 338
K+A++ F+WA + + ++ D M +LGRE ++LDE+ + Y +++
Sbjct: 152 KRAVLLFKWAILNLYSRNEKIDNQLVELMVRILGRESQHSVALRLLDEISVEEYSLDVRA 211
Query: 339 CVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRV 398
+L +S + A+ ++E P++ +L V K R ++K++ +
Sbjct: 212 WTTILHAYSRIGKYERAITMFEKMRKTGLSPTLVTYNVMLD--VYGKM--GRSWNKILGL 267
Query: 399 F---RENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSS 455
R NG + ++V+ A G + E K ++ G++A + + +
Sbjct: 268 LDEMRSNGLEFDEFTCSTVISACGREGLLDEARKFFARLKSEGYVAGTFTYNSLLQVFGK 327
Query: 456 AGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGY 515
AG EA + ME + + L+ + AG ++ AD M+ K G
Sbjct: 328 AGIYSEALSILKEMEKNNCPPDLVTYNELVAAYVRAGFHEEGADFIDTMIRK-GIMPNAI 386
Query: 516 AIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCL 575
++N Y + A F ++E P TY ++ L + ++ + +LC
Sbjct: 387 TYTTVINAYGKAGKEDKALSFFRQ-MKESGCVPNVCTYNAILGMLGKKSRLEEMIDMLCD 445
Query: 576 MKDHGFPP 583
M+ +G P
Sbjct: 446 MRSNGCAP 453
Score = 58.5 bits (140), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 117/515 (22%), Positives = 203/515 (39%), Gaps = 71/515 (13%)
Query: 145 DEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRNK 204
DEAR+FF L+ E + TYN +L++ G G+ E ++ M+K N+
Sbjct: 297 DEARKFFA-RLKSEGYVAGTFTYNSLLQVFGKAGIYSEALSILKEMEKNNCPPDLVTYNE 355
Query: 205 MTEKFEKEGLESDLEKLKGIFATGSIDNSIEKVASRICKVVRSDIWGDDVERQLRDLNVT 264
+ + + G E+ A I ++R I + + T
Sbjct: 356 LVAAYVRAGFH-------------------EEGADFIDTMIRKGIMPNAI---------T 387
Query: 265 FSNDLVKFVVDKLGDEPK--KALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWK 322
++ V++ G K KAL FFR +ESG V + +YNA+ +LG++ ++
Sbjct: 388 YTT-----VINAYGKAGKEDKALSFFRQMKESGCVP-NVCTYNAILGMLGKKSRLEEMID 441
Query: 323 VLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIV 382
+L +MRS G T +L + M K ++ +C +P+ + L+
Sbjct: 442 MLCDMRSNGCAPNSVTWNTMLAMCGNKGMHKYVNRVFREMKSCGFEPNRDTFNALIGAYG 501
Query: 383 -VSKQLDM-RLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFI 440
Q+D+ +++ ++++ G N++L AL G ++ M+ GF
Sbjct: 502 RCGSQIDVVKMYEEMIKA----GFTPCVTTYNALLNALARRGDWEAAESVILDMKSKGFK 557
Query: 441 ASSNMKSKIAFRLSSAG-----KKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLD 495
+ S + + G +K E + H+ S W+ L V +
Sbjct: 558 PNETSYSLMLNCYAKGGNGRGIEKIEEEIYNGHIFPS--------WILLRT--LVLANFK 607
Query: 496 KAADCFQKMVEKEGTSHAGYAIDL-LVNTYCS---KNRAIDACKFVHNCVREYDLKPWHT 551
+ A + +E H GY DL L N+ S KN+ D + +RE L+P
Sbjct: 608 RRALMGMERAFQEFCKH-GYKPDLVLFNSMLSIFAKNKMYDRAHEMLRLIRESGLQPDLV 666
Query: 552 TYEELIKNLLVQRG---FKDALSLLCLMKDHGFPPFV--DPFIKYVSKSGTSDDAIAFLK 606
TY L+ + RG +K L + K G P V + IK + G +AI L
Sbjct: 667 TYNSLMD--MYARGGECWKGEEILKGIQKSGGKPDLVSYNTVIKGFCRQGLMQEAIRTLS 724
Query: 607 GMTSKRFPSMSVVLCLFAAFFQAR-RHSEAQDLLS 640
MT V F A + + SE ++++S
Sbjct: 725 EMTISGIRPCIVTYNTFVAGYSGKGMFSEVEEVIS 759
Score = 45.8 bits (107), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 74/327 (22%), Positives = 123/327 (37%), Gaps = 37/327 (11%)
Query: 273 VVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGY 332
V K+G K L +G ++ DE + + + S GRE +D K ++S+GY
Sbjct: 253 VYGKMGRSWNKILGLLDEMRSNG-LEFDEFTCSTVISACGREGLLDEARKFFARLKSEGY 311
Query: 333 EMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLF 392
T +L F + + EA+ + K NC L+ L
Sbjct: 312 VAGTFTYNSLLQVFGKAGIYSEALSI------LKEMEKNNCPPDLVTY--------NELV 357
Query: 393 SKVVRV-FRENGNVLTDAML-----------NSVLKALISVGRMGECNKILKAMEEGGFI 440
+ VR F E G D M+ +V+ A G+ + + M+E G +
Sbjct: 358 AAYVRAGFHEEGADFIDTMIRKGIMPNAITYTTVINAYGKAGKEDKALSFFRQMKESGCV 417
Query: 441 ASSNMKSKIAFRLSSAGKKDEANEFMD---HMEASGSDVGDKMWVSLIKGHCVAGDLDKA 497
+ + I L GKK E +D M ++G W +++ C + K
Sbjct: 418 PNVCTYNAI---LGMLGKKSRLEEMIDMLCDMRSNGCAPNSVTWNTML-AMCGNKGMHKY 473
Query: 498 ADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELI 557
+ + ++ G + L+ Y ID K ++ P TTY L+
Sbjct: 474 VNRVFREMKSCGFEPNRDTFNALIGAYGRCGSQIDVVKMYEEMIKA-GFTPCVTTYNALL 532
Query: 558 KNLLVQRG-FKDALSLLCLMKDHGFPP 583
N L +RG ++ A S++ MK GF P
Sbjct: 533 -NALARRGDWEAAESVILDMKSKGFKP 558
>gi|449437378|ref|XP_004136469.1| PREDICTED: pentatricopeptide repeat-containing protein At5g11310,
mitochondrial-like [Cucumis sativus]
gi|449503560|ref|XP_004162063.1| PREDICTED: pentatricopeptide repeat-containing protein At5g11310,
mitochondrial-like [Cucumis sativus]
Length = 615
Score = 62.0 bits (149), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 83/379 (21%), Positives = 148/379 (39%), Gaps = 47/379 (12%)
Query: 246 RSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYN 305
RS G +E L + S+ L++ V D PK F WA + + + +N
Sbjct: 99 RSVRPGAALEDALDRTGIVPSSSLLEAVFDHFDSSPKFLHSLFLWAAKKSGFRPSAALFN 158
Query: 306 AMASVLGREDCIDRFWKVLDEMRSKGYE---MEMETCVKVLGRFSERNMVKEAVDLYEFA 362
+ +VL + D W ++ G E + +E V ++ R++ MV+ A+ YEFA
Sbjct: 159 RLINVLAKSREFDSAWSLITSRLRGGEESFLVSVEVFVILIRRYARAGMVQPAIRTYEFA 218
Query: 363 MACKNKPSVNCCTFLLRKIVVS---KQLDMRLFSKVVRVFRENG----------NVLTDA 409
C + + L +I++ K+ +R+ S+ RE G N+L +
Sbjct: 219 --CNLETISGTGSEGLFEILLDSLCKEGHVRVASEYFNRKREMGSSFEPSIRAYNILING 276
Query: 410 ML-----------------NSVLKALISVGRM--GECN--------KILKAMEEGGFIAS 442
N + +++ G + G C +++ M G +
Sbjct: 277 WFRSRKLKHAQRLWFEMKKNKISPTVVTYGTLIEGYCRMRSVEIAIELVDEMRREGIEPN 336
Query: 443 SNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQ 502
+ + + I L AG+ EA M+ + SL+KG+C AGDL A+ +
Sbjct: 337 AIVYNPIVDALGEAGRFKEALGMMERFMVLEQGPTISTYNSLVKGYCKAGDLSGASKILK 396
Query: 503 KMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLV 562
M+ + G + + + SK I+ ++N + E P TY L+K L
Sbjct: 397 MMIGR-GFTPTPTTYNYFFR-FFSKYGKIEESMSLYNKMIESGYAPDKLTYHLLLKMLCE 454
Query: 563 QRGFKDALSLLCLMKDHGF 581
+ A+ + MK GF
Sbjct: 455 EERLNLAVQVCNEMKARGF 473
Score = 50.1 bits (118), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 77/403 (19%), Positives = 159/403 (39%), Gaps = 23/403 (5%)
Query: 121 LELSGVVFTHEMVLKVLKNLESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLV 180
L+ +G+V + ++ V + +SSP F W +K R S+ +N R++ V
Sbjct: 111 LDRTGIVPSSSLLEAVFDHFDSSPKFLHSLFLWAAKKSGFRPSAALFN---RLINVLAKS 167
Query: 181 QEF---WGLVDVMKKKG---YGVASHVRNKMTEKFEKEGLESDLEK-------LKGIFAT 227
+EF W L+ + G + V+ V + ++ + G+ + L+ I T
Sbjct: 168 REFDSAWSLITSRLRGGEESFLVSVEVFVILIRRYARAGMVQPAIRTYEFACNLETISGT 227
Query: 228 GSIDNSIEKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIF 287
GS + E + +CK + + R+ R++ +F + + + G + L
Sbjct: 228 GS-EGLFEILLDSLCKEGHVRVASEYFNRK-REMGSSFEPSIRAYNILINGWFRSRKLKH 285
Query: 288 FR--WAE-ESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLG 344
+ W E + + +Y + R ++ +++DEMR +G E ++
Sbjct: 286 AQRLWFEMKKNKISPTVVTYGTLIEGYCRMRSVEIAIELVDEMRREGIEPNAIVYNPIVD 345
Query: 345 RFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGN 404
E KEA+ + E M + P+++ L++ K D+ SK++++ G
Sbjct: 346 ALGEAGRFKEALGMMERFMVLEQGPTISTYNSLVKGYC--KAGDLSGASKILKMMIGRGF 403
Query: 405 VLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANE 464
T N + G++ E + M E G+ + L + + A +
Sbjct: 404 TPTPTTYNYFFRFFSKYGKIEESMSLYNKMIESGYAPDKLTYHLLLKMLCEEERLNLAVQ 463
Query: 465 FMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEK 507
+ M+A G D+ L+ C ++A F+ M+ +
Sbjct: 464 VCNEMKARGFDMDLATSTMLMHLLCKMHKFEEAFAEFEHMIHR 506
>gi|168011113|ref|XP_001758248.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162690704|gb|EDQ77070.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 658
Score = 62.0 bits (149), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 104/483 (21%), Positives = 196/483 (40%), Gaps = 25/483 (5%)
Query: 170 MLRIVGVHGL-----VQEFWGLVDVMKKKGYGVASHVRNKMTEKFEKEG-LESDLEKLKG 223
+L + + GL V+E L D +K+ G N + +E LE+ LE +
Sbjct: 79 LLSAIAITGLSKESRVEEAMLLFDQLKQLGVSPGPMAYNAIVGTCAREDRLETALELMNQ 138
Query: 224 IFATG-SIDNSIEKVASRIC--KVVRSDIWG---DDVERQLRDLNVTFSNDLVKFVVDKL 277
+ +G DN + + C K V D+ ++E++ +++ ND++ +
Sbjct: 139 MRGSGFQPDNVNYTLVFQACAKKRVGVDVISRVCANIEQEGLEMDTKLYNDVINAYC-RA 197
Query: 278 GDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEME 337
GD P KA + + V D SY+++ L +D EM+SK Y++ +
Sbjct: 198 GD-PDKAFQYMGLMQACDLVP-DVRSYSSLIETLVVVRRLDDAEAAYAEMKSKSYKINLR 255
Query: 338 TCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVR 397
T +L ++ ++++++ L + A K S L+ + +LD +K
Sbjct: 256 TLNALLSAYTRKSLLEQVEKLMQDAEDAGLKLSTFSYGLLIDAYSRAGRLDQ---AKAAF 312
Query: 398 VFRENGNVLTDAMLNSVLKALISVGRMGECN-KILKAMEEGGFIASSNMKSKIAFRLSSA 456
+ NV +A + S L R + ++LK M + + + +
Sbjct: 313 HNMKVENVPANAFIYSRLMVAYRNARQWDGTIRLLKDMYASNIKPNQFIFNILIDTYGKF 372
Query: 457 GKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYA 516
G+ +A M+ G W SLI+ HC AG + +A D ++M E+E +
Sbjct: 373 GRLPQAMRTFAQMDKEGFKPDVVTWNSLIEAHCRAGLITEALDLLKQMQERECVPSL-HT 431
Query: 517 IDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLM 576
++++N NR + + +R L P TY L+ + + +++A L M
Sbjct: 432 YNIILNALGWHNRWKEMALLLDE-MRFKGLDPNVVTYTTLVDSYGTSKRYREASEYLKQM 490
Query: 577 KDHGFPPFVDPFIKYV---SKSGTSDDAIAFLKGMTSKRFP-SMSVVLCLFAAFFQARRH 632
K G P + +K G + A+ K M ++S++ L AF A ++
Sbjct: 491 KSQGLQPSTSVYCALANSYAKRGLCEQAMEVFKSMEKDGVELNLSMLNLLINAFGVAGKY 550
Query: 633 SEA 635
EA
Sbjct: 551 VEA 553
Score = 47.8 bits (112), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 77/384 (20%), Positives = 161/384 (41%), Gaps = 16/384 (4%)
Query: 155 LEKESERLSSKTYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRNKMTEKFEKEGL 214
++ +S +++ +T N +L L+++ L+ + G +++ + + + + G
Sbjct: 245 MKSKSYKINLRTLNALLSAYTRKSLLEQVEKLMQDAEDAGLKLSTFSYGLLIDAYSRAG- 303
Query: 215 ESDLEKLKGIFATGSIDNSIEK--VASRICKVVRSDIWGDDVERQLRDL---NVTFSNDL 269
L++ K F ++N + SR+ R+ D R L+D+ N+ + +
Sbjct: 304 --RLDQAKAAFHNMKVENVPANAFIYSRLMVAYRNARQWDGTIRLLKDMYASNIKPNQFI 361
Query: 270 VKFVVD---KLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDE 326
++D K G P+ A+ F ++ GF K D ++N++ R I +L +
Sbjct: 362 FNILIDTYGKFGRLPQ-AMRTFAQMDKEGF-KPDVVTWNSLIEAHCRAGLITEALDLLKQ 419
Query: 327 MRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQ 386
M+ + + T +L N KE L + P+V T L+ SK+
Sbjct: 420 MQERECVPSLHTYNIILNALGWHNRWKEMALLLDEMRFKGLDPNVVTYTTLVDSYGTSKR 479
Query: 387 LDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMK 446
R S+ ++ + G + ++ ++ + G + ++ K+ME+ G + +M
Sbjct: 480 Y--REASEYLKQMKSQGLQPSTSVYCALANSYAKRGLCEQAMEVFKSMEKDGVELNLSML 537
Query: 447 SKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVE 506
+ + AGK EA D++ G + +L+K A LD+ D +++MV
Sbjct: 538 NLLINAFGVAGKYVEAFSVFDYILEVGMSPDVVTYTTLMKALIKAEQLDQVPDVYEQMV- 596
Query: 507 KEGTSHAGYAIDLLVNTYCSKNRA 530
+ G + A D+L + K R
Sbjct: 597 RAGCTPDDMAKDMLRSAQRFKQRG 620
>gi|449453449|ref|XP_004144470.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g13630-like [Cucumis sativus]
Length = 830
Score = 62.0 bits (149), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 104/488 (21%), Positives = 190/488 (38%), Gaps = 37/488 (7%)
Query: 145 DEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRNK 204
D AR FF ++ K S +YN++L + V G + E G D M+K G N
Sbjct: 288 DVARSFF-CLMVKNGLLHDSFSYNILLHGLCVAGSMDEALGFTDDMEKHGVEPDVVTYNT 346
Query: 205 MTEKFEKEGLESDLEKLKGIFATGSIDNSIEKVASRICKVVRSDIWGDDVERQLR----- 259
+ + F GL S K+ ++ + + IC + ++E L+
Sbjct: 347 LAKGFLLLGLMSGARKVVQKMLLQGLNPDLVTYTTLICGHCQMG----NIEEALKLRQET 402
Query: 260 -----DLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGRE 314
LNV F N L+ + K+G ++AL F E+ ++ D Y+ + L +E
Sbjct: 403 LSRGFKLNVIFYNMLLSCLC-KVG-RIEEALTLFD-EMETLRLEPDFIVYSILIHGLCKE 459
Query: 315 DCIDRFWKVLDEMRSK-GYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNC 373
+ R +++ ++MR K + +LG F N + EA + ++ V
Sbjct: 460 GFVQRAYQLYEQMRLKRKFPHHFAQRAVLLGLFKNGN-ISEARNYFDTWTRMDLMEDVVL 518
Query: 374 CTFLLRKIVVSKQLD-----MRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECN 428
++ V +LD M+L+ K++ E G + N+++ G + E
Sbjct: 519 YNIMIDGYV---RLDGIAEAMQLYYKMI----ERGITPSVVTFNTLINGFCRRGDLMEAR 571
Query: 429 KILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGH 488
K+L+ + G + S + + G E F+ MEA+ + LIKG
Sbjct: 572 KMLEVIRLKGLVPSVVTYTTLMNAYCEVGNMQEMFHFLHEMEANAVVPTHVTYTVLIKGL 631
Query: 489 CVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKP 548
C + ++ + M K G + ++ +C K + I ++N + ++ P
Sbjct: 632 CRQNKMHESLQLLEYMYAK-GLLPDSVTYNTIIQCFC-KGKEITKALQLYNMMLLHNCDP 689
Query: 549 WHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFP---PFVDPFIKYVSKSGTSDDAIAFL 605
TY+ LI L + KD ++ ++D IK G A+ +
Sbjct: 690 TQVTYKVLINALCIFGDLKDVDRMVVSIEDRNITLKKVTYMTIIKAHCAKGQVSKALGYF 749
Query: 606 KGMTSKRF 613
M +K F
Sbjct: 750 NQMLAKGF 757
>gi|413933767|gb|AFW68318.1| hypothetical protein ZEAMMB73_786057 [Zea mays]
Length = 645
Score = 62.0 bits (149), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 65/295 (22%), Positives = 125/295 (42%), Gaps = 16/295 (5%)
Query: 289 RWAEESGFVKH--------DESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCV 340
RW E G + D+ ++N + L + +DR +VL++M G ++ T
Sbjct: 337 RWEEAEGLLAEMFDKDCPLDDVTFNILVDFLCQNGLVDRVIEVLEQMLEHGCMPDVITYT 396
Query: 341 KVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQ-LDM-RLFSKVVRV 398
V+ F + ++ EAV L AC +P+ T +L+ + +++ +D L S+++
Sbjct: 397 TVINGFCKEGLIDEAVMLLRSMAACGCRPNTVSYTIVLKGLCSAERWVDAEELMSQMI-- 454
Query: 399 FRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGK 458
+ G N+++ L G + + ++LK M G S + L AG
Sbjct: 455 --QQGCPPNPVTFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGN 512
Query: 459 KDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAID 518
DEA E ++ M G ++ S+ G ++K F+ + + S A +
Sbjct: 513 TDEALELLNVMVKKGMSPNTIIYSSIASALSGEGRINKVIQMFENIQDTTVRSDA-VLYN 571
Query: 519 LLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLL 573
++++ C + A +F+ V P +TY LI+ L + K+A +L
Sbjct: 572 AVISSLCKRGETDRAIEFLAYMVSS-GCVPNESTYTILIRGLASEGFVKEAQEIL 625
>gi|147825385|emb|CAN75494.1| hypothetical protein VITISV_030525 [Vitis vinifera]
Length = 821
Score = 62.0 bits (149), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 63/308 (20%), Positives = 127/308 (41%), Gaps = 12/308 (3%)
Query: 282 KKALIFFRWAEESGFVKH---DESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMET 338
K+A++ F+WA + + ++ D M +LGRE ++LDE+ + Y +++
Sbjct: 152 KRAVLLFKWAILNLYSRNEKIDNQLVELMVRILGRESQHSVALRLLDEISVEEYSLDVRA 211
Query: 339 CVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRV 398
+L +S + A+ ++E P++ +L V K R ++K++ +
Sbjct: 212 WTTILHAYSRIGKYERAITMFEKMRKTGLSPTLVTYNVMLD--VYGKM--GRSWNKILGL 267
Query: 399 F---RENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSS 455
R NG + ++V+ A G + E K ++ G++A + + +
Sbjct: 268 LDEMRSNGLEFDEFTCSTVISACGREGLLDEARKFFARLKSEGYVAGTFTYNSLLQVFGK 327
Query: 456 AGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGY 515
AG EA + ME + + L+ + AG ++ AD M+ K G
Sbjct: 328 AGIYSEALSILKEMEKNNCPPDLVTYNELVAAYVRAGFHEEGADFIDTMIRK-GIMPNAI 386
Query: 516 AIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCL 575
++N Y + A F ++E P TY ++ L + ++ + +LC
Sbjct: 387 TYTTVINAYGKAGKEDKALSFFRQ-MKESGCVPNVCTYNAILGMLGKKSRLEEMIDMLCD 445
Query: 576 MKDHGFPP 583
M+ +G P
Sbjct: 446 MRSNGCAP 453
Score = 58.5 bits (140), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 117/515 (22%), Positives = 203/515 (39%), Gaps = 71/515 (13%)
Query: 145 DEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRNK 204
DEAR+FF L+ E + TYN +L++ G G+ E ++ M+K N+
Sbjct: 297 DEARKFFA-RLKSEGYVAGTFTYNSLLQVFGKAGIYSEALSILKEMEKNNCPPDLVTYNE 355
Query: 205 MTEKFEKEGLESDLEKLKGIFATGSIDNSIEKVASRICKVVRSDIWGDDVERQLRDLNVT 264
+ + + G E+ A I ++R I + + T
Sbjct: 356 LVAAYVRAGFH-------------------EEGADFIDTMIRKGIMPNAI---------T 387
Query: 265 FSNDLVKFVVDKLGDEPK--KALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWK 322
++ V++ G K KAL FFR +ESG V + +YNA+ +LG++ ++
Sbjct: 388 YTT-----VINAYGKAGKEDKALSFFRQMKESGCVP-NVCTYNAILGMLGKKSRLEEMID 441
Query: 323 VLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIV 382
+L +MRS G T +L + M K ++ +C +P+ + L+
Sbjct: 442 MLCDMRSNGCAPNSVTWNTMLAMCGNKGMHKYVNRVFREMKSCGFEPNRDTFNALIGAYG 501
Query: 383 -VSKQLDM-RLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFI 440
Q+D+ +++ ++++ G N++L AL G ++ M+ GF
Sbjct: 502 RCGSQIDVVKMYEEMIKA----GFTPCVTTYNALLNALARRGDWEAAESVILDMKSKGFK 557
Query: 441 ASSNMKSKIAFRLSSAG-----KKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLD 495
+ S + + G +K E + H+ S W+ L V +
Sbjct: 558 PNETSYSLMLNCYAKGGNGRGIEKIEEEIYNGHIFPS--------WILLRT--LVLANFK 607
Query: 496 KAADCFQKMVEKEGTSHAGYAIDL-LVNTYCS---KNRAIDACKFVHNCVREYDLKPWHT 551
+ A + +E H GY DL L N+ S KN+ D + +RE L+P
Sbjct: 608 RRALMGMERAFQEFCKH-GYKPDLVLFNSMLSIFAKNKMYDRAHEMLRLIRESGLQPDLV 666
Query: 552 TYEELIKNLLVQRG---FKDALSLLCLMKDHGFPPFV--DPFIKYVSKSGTSDDAIAFLK 606
TY L+ + RG +K L + K G P V + IK + G +AI L
Sbjct: 667 TYNSLMD--MYARGGECWKGEEILKGIQKSGGKPDLVSYNTVIKGFCRQGLMQEAIRTLS 724
Query: 607 GMTSKRFPSMSVVLCLFAAFFQAR-RHSEAQDLLS 640
MT V F A + + SE ++++S
Sbjct: 725 EMTISGIRPCIVTYNTFVAGYSGKGMFSEVEEVIS 759
Score = 45.8 bits (107), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 74/327 (22%), Positives = 123/327 (37%), Gaps = 37/327 (11%)
Query: 273 VVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGY 332
V K+G K L +G ++ DE + + + S GRE +D K ++S+GY
Sbjct: 253 VYGKMGRSWNKILGLLDEMRSNG-LEFDEFTCSTVISACGREGLLDEARKFFARLKSEGY 311
Query: 333 EMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLF 392
T +L F + + EA+ + K NC L+ L
Sbjct: 312 VAGTFTYNSLLQVFGKAGIYSEALSI------LKEMEKNNCPPDLVTY--------NELV 357
Query: 393 SKVVRV-FRENGNVLTDAML-----------NSVLKALISVGRMGECNKILKAMEEGGFI 440
+ VR F E G D M+ +V+ A G+ + + M+E G +
Sbjct: 358 AAYVRAGFHEEGADFIDTMIRKGIMPNAITYTTVINAYGKAGKEDKALSFFRQMKESGCV 417
Query: 441 ASSNMKSKIAFRLSSAGKKDEANEFMD---HMEASGSDVGDKMWVSLIKGHCVAGDLDKA 497
+ + I L GKK E +D M ++G W +++ C + K
Sbjct: 418 PNVCTYNAI---LGMLGKKSRLEEMIDMLCDMRSNGCAPNSVTWNTML-AMCGNKGMHKY 473
Query: 498 ADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELI 557
+ + ++ G + L+ Y ID K ++ P TTY L+
Sbjct: 474 VNRVFREMKSCGFEPNRDTFNALIGAYGRCGSQIDVVKMYEEMIKA-GFTPCVTTYNALL 532
Query: 558 KNLLVQRG-FKDALSLLCLMKDHGFPP 583
N L +RG ++ A S++ MK GF P
Sbjct: 533 -NALARRGDWEAAESVILDMKSKGFKP 558
>gi|326522214|dbj|BAK04235.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 966
Score = 62.0 bits (149), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 82/362 (22%), Positives = 151/362 (41%), Gaps = 50/362 (13%)
Query: 282 KKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVK 341
+KA + GFV D S+Y + + L + +D+ + + EM+ G ++ T
Sbjct: 434 EKAFQIVKEMMRKGFVP-DASTYTKVITFLCQAKRVDKAFLLFQEMKKVGVNPDVYTYTI 492
Query: 342 VLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMR--LFSKVVRVF 399
++ F + ++++A ++ + P+V T LL + SKQL +F ++V
Sbjct: 493 LIDSFCKAGLIEQAQSWFDEMRSAGCSPNVVTYTALLHAYLKSKQLYQANDIFHRMVGDA 552
Query: 400 RENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASS-NMKSKIAFR------ 452
+ A+++ + KA GE K + + I +S N++S F
Sbjct: 553 CYPNAITYSALIDGLCKA-------GEIQKACEVYAK--LIGTSDNIESDFYFEGKDTDT 603
Query: 453 --------------LSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAA 498
L A K +A++ +D M A+G + ++ +L+ G C G++D A
Sbjct: 604 ISPNVVTYGALVNGLCKAQKVSDAHDLLDAMLAAGCEPNQIVYDALVDGFCKVGEIDSAQ 663
Query: 499 DCFQKMVEKEGTSHAGYAIDLLVNTYCS------KNRAIDACKFVHNCVREYDLKPWHTT 552
+ F +M + GY V+TY S K+ +D V + + + P T
Sbjct: 664 EVFLRM------TKCGYLPS--VHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCNPNVVT 715
Query: 553 YEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPF---IKYVSKSGTSDDAIAFLKGMT 609
Y ++ L + AL+LL LM+ G P V + I + K+G D + M
Sbjct: 716 YTAMVDGLCKTGETEKALNLLSLMEKKGCSPNVVTYTALIDGLGKAGKVDAGLELFMQMK 775
Query: 610 SK 611
+K
Sbjct: 776 TK 777
Score = 47.4 bits (111), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 90/417 (21%), Positives = 166/417 (39%), Gaps = 40/417 (9%)
Query: 241 ICKVVRSDIWGDD----VERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGF 296
I K VR+ +G D ER LR ++ +V V+ + P+ + FF WAE
Sbjct: 73 ISKAVRA--YGADFDGKAERFLRRYREFLTDSVVVAVLGAV-RSPELCVRFFLWAERQVG 129
Query: 297 VKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAV 356
KH + Y+A+A VLG ED ++L E+ ++ ++ R + + EA+
Sbjct: 130 YKHTGACYDALAEVLGFEDPARTAERLLREIGEDDRDVLGRLLNVLVRRCCLQGLWGEAL 189
Query: 357 D----LYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLN 412
+ L +F +PS L++ + + Q++M +V + +G + + +
Sbjct: 190 EELGRLKDFGY----RPSAVTYNALVQVLASAGQVEMAF--RVQKEMSASGFCMDRSTVG 243
Query: 413 SVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEAS 472
S +AL GR G+ L +E F + + +++ L A +EA F+ M +
Sbjct: 244 SFAQALCKEGRWGD---ALDLLEREDFKLDTVLCTQMISGLMEASLFNEAMSFLHRMRCN 300
Query: 473 GSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAID 532
+ +L+ G L M+ EG + + + LV+TYC+
Sbjct: 301 SYIPNVVTYRTLLTGFLKKKQLGWCKRIINMMM-TEGCNPSPSLFNSLVHTYCNAEDYAY 359
Query: 533 ACKFVHNCVREYDLKPWHTTYEELIKNL-------------LVQRGFKDALSLLCLMKDH 579
A K + N + P + Y I ++ L ++ +++ L C++
Sbjct: 360 AYK-LFNRMNTCGCPPGYVVYNIFIGSICGREELPNPELLDLAEKVYEEMLVASCVLNKI 418
Query: 580 GFPPFVDPFIKYVSKSGTSDDAIAFLKGMTSKRF-PSMSVVLCLFAAFFQARRHSEA 635
F + + G + A +K M K F P S + QA+R +A
Sbjct: 419 NTANFA----RCLCGVGKFEKAFQIVKEMMRKGFVPDASTYTKVITFLCQAKRVDKA 471
Score = 42.4 bits (98), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 98/516 (18%), Positives = 194/516 (37%), Gaps = 44/516 (8%)
Query: 139 NLESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVA 198
E A R + E + + L + N+++R + GL E + +K GY +
Sbjct: 145 GFEDPARTAERLLREIGEDDRDVLG-RLLNVLVRRCCLQGLWGEALEELGRLKDFGYRPS 203
Query: 199 SHVRNKMTEKFEKEG-LESDLEKLKGIFATG-SIDNS-IEKVASRICKVVRSDIWGDDV- 254
+ N + + G +E K + A+G +D S + A +CK R WGD +
Sbjct: 204 AVTYNALVQVLASAGQVEMAFRVQKEMSASGFCMDRSTVGSFAQALCKEGR---WGDALD 260
Query: 255 --ERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLG 312
ER+ L+ ++ +++ +A+ F + ++ + +Y + +
Sbjct: 261 LLEREDFKLDTVLCTQMISGLME--ASLFNEAMSFLHRMRCNSYIP-NVVTYRTLLTGFL 317
Query: 313 REDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVN 372
++ + ++++ M ++G ++ + A L+ C P
Sbjct: 318 KKKQLGWCKRIINMMMTEGCNPSPSLFNSLVHTYCNAEDYAYAYKLFNRMNTCGCPPGYV 377
Query: 373 CCTFLLRKIVVSKQL-DMRLFSKVVRVFRENGNVLTDAMLNSV-----LKALISVGRMGE 426
+ I ++L + L +V+ E ++ +LN + + L VG+ +
Sbjct: 378 VYNIFIGSICGREELPNPELLDLAEKVYEEM--LVASCVLNKINTANFARCLCGVGKFEK 435
Query: 427 CNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIK 486
+I+K M GF+ ++ +K+ L A + D+A M+ G + + LI
Sbjct: 436 AFQIVKEMMRKGFVPDASTYTKVITFLCQAKRVDKAFLLFQEMKKVGVNPDVYTYTILID 495
Query: 487 GHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDL 546
C AG +++A F +M G S L++ Y + A H V +
Sbjct: 496 SFCKAGLIEQAQSWFDEM-RSAGCSPNVVTYTALLHAYLKSKQLYQANDIFHRMVGD-AC 553
Query: 547 KPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPFIKYVSKSGTSDDAIA--F 604
P TY LI L + A + Y GTSD+ + +
Sbjct: 554 YPNAITYSALIDGLCKAGEIQKACEV------------------YAKLIGTSDNIESDFY 595
Query: 605 LKGMTSKRF-PSMSVVLCLFAAFFQARRHSEAQDLL 639
+G + P++ L +A++ S+A DLL
Sbjct: 596 FEGKDTDTISPNVVTYGALVNGLCKAQKVSDAHDLL 631
Score = 38.9 bits (89), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 44/208 (21%), Positives = 87/208 (41%), Gaps = 6/208 (2%)
Query: 287 FFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRF 346
F+ +++ + + +Y A+ + L + + +LD M + G E ++ F
Sbjct: 594 FYFEGKDTDTISPNVVTYGALVNGLCKAQKVSDAHDLLDAMLAAGCEPNQIVYDALVDGF 653
Query: 347 SERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLD--MRLFSKVVRVFRENGN 404
+ + A +++ C PSV+ T L+ ++ +LD M++ S++++ N N
Sbjct: 654 CKVGEIDSAQEVFLRMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKD-SCNPN 712
Query: 405 VLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANE 464
V+T +++ L G + +L ME+ G + + + L AGK D E
Sbjct: 713 VVT---YTAMVDGLCKTGETEKALNLLSLMEKKGCSPNVVTYTALIDGLGKAGKVDAGLE 769
Query: 465 FMDHMEASGSDVGDKMWVSLIKGHCVAG 492
M+ G + LI C AG
Sbjct: 770 LFMQMKTKGCAPNYVTYRILINHCCAAG 797
>gi|224030417|gb|ACN34284.1| unknown [Zea mays]
gi|413950072|gb|AFW82721.1| hypothetical protein ZEAMMB73_503137 [Zea mays]
Length = 647
Score = 62.0 bits (149), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 66/284 (23%), Positives = 113/284 (39%), Gaps = 12/284 (4%)
Query: 302 SSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEF 361
+SYNA+ L RE + + V+ +M +G + + T ++ F + ++ A +
Sbjct: 229 ASYNAIVLALCREFRMQEVFSVVSDMVGRGLQPNVITYTTIVDAFCKAGELRMACAILAR 288
Query: 362 AMACKNKPSVNCCTFLLRKIV----VSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKA 417
+ P+V T L+R + V LDM R G + N +++
Sbjct: 289 MVITGCTPNVVTFTALVRGLFDDGRVHDALDMW------RWMVAEGWAPSTVSYNILIRG 342
Query: 418 LISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVG 477
L SVG + + IL +ME+ G + S + S AG A + M SG
Sbjct: 343 LCSVGDLKGASSILNSMEQHGCFPNVRTYSTLIDGFSKAGDLGGAISIWNDMSRSGCKPN 402
Query: 478 DKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFV 537
++ +++ C ++A KM+ E + L+ + C R A
Sbjct: 403 VVVYTNMVDVFCKKLMFNQAKSLIDKML-LENCPPNTVTFNTLIRSLCDCRRVGRALGVF 461
Query: 538 HNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGF 581
H +R + P TY ELI L + DAL ++ M+ HG
Sbjct: 462 HE-MRRHGCVPNGRTYNELIHGLFREGNCGDALHMVTEMQSHGI 504
Score = 43.9 bits (102), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 84/374 (22%), Positives = 132/374 (35%), Gaps = 55/374 (14%)
Query: 281 PKKAL-IFFRWAEESGFVKHDESS-YNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMET 338
P +AL F+R + G + E YN + L RE+ + V D MR G + T
Sbjct: 106 PDRALKTFYRAVHDLGCARPTEPRLYNHLIDALLRENMVGAVVLVYDNMRKDGVHPNVFT 165
Query: 339 CVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRV 398
++ + N V A + + MA K P
Sbjct: 166 YNLLVRALCQNNRVGAARKMLD-EMARKGCPP---------------------------- 196
Query: 399 FRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGK 458
D +++ L + R+ E ++L AM +A+S + I L +
Sbjct: 197 --------DDVTYATIVSVLCKLDRLDEATEVLAAMPP---VAAS--YNAIVLALCREFR 243
Query: 459 KDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAID 518
E + M G + +++ C AG+L A +MV T +
Sbjct: 244 MQEVFSVVSDMVGRGLQPNVITYTTIVDAFCKAGELRMACAILARMVITGCTPNV-VTFT 302
Query: 519 LLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKD 578
LV R DA V E P +Y LI+ L K A S+L M+
Sbjct: 303 ALVRGLFDDGRVHDALDMWRWMVAE-GWAPSTVSYNILIRGLCSVGDLKGASSILNSMEQ 361
Query: 579 HGFPPFVDPF---IKYVSKSGTSDDAIAFLKGMT-SKRFPSMSVVLCLFAAFFQARRHSE 634
HG P V + I SK+G AI+ M+ S P++ V + F + ++
Sbjct: 362 HGCFPNVRTYSTLIDGFSKAGDLGGAISIWNDMSRSGCKPNVVVYTNMVDVFCKKLMFNQ 421
Query: 635 AQDLLSK-----CP 643
A+ L+ K CP
Sbjct: 422 AKSLIDKMLLENCP 435
>gi|125582652|gb|EAZ23583.1| hypothetical protein OsJ_07284 [Oryza sativa Japonica Group]
Length = 667
Score = 62.0 bits (149), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 66/287 (22%), Positives = 120/287 (41%), Gaps = 9/287 (3%)
Query: 282 KKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVK 341
++ L+ R +E G+ + +Y A+ RE ++L EM KG + TC
Sbjct: 93 EEGLLMLRRMKELGW-RPSTRAYAAVVDFRCRERKAKEAEEMLQEMFEKGLAPCVVTCTA 151
Query: 342 VLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLD--MRLFSKVVRVF 399
V+ + + + +A+ + E KP+V L++ ++ M L +K+ R
Sbjct: 152 VINAYCKEGRMSDALRVLELMKLRGCKPNVWTYNALVQGFCNEGKVHKAMTLLNKM-RAC 210
Query: 400 RENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKK 459
N + +T N +++ G + ++L+ ME G IA + + L G+
Sbjct: 211 GVNPDAVT---YNLLIRGQCIDGHIESAFRLLRLMEGDGLIADQYTYNALINALCKDGRT 267
Query: 460 DEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDL 519
D+A D +E G + SLI G C +G D A +KMV G + Y
Sbjct: 268 DQACSLFDSLETRGIKPNAVTFNSLINGLCKSGKADIAWKFLEKMVSA-GCTPDTYTYSS 326
Query: 520 LVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGF 566
+ C + + F+ +++ D+KP Y +I LL +R +
Sbjct: 327 FIEHLCKMKGSQEGLSFIGEMLQK-DVKPSTVNYTIVIHKLLKERNY 372
Score = 53.9 bits (128), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 72/347 (20%), Positives = 138/347 (39%), Gaps = 36/347 (10%)
Query: 298 KHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAV- 356
+ D ++N++ R + +D + D+M +G+ ++ + ++ E + EAV
Sbjct: 7 RPDAYTFNSLIVGYCRTNQVDVARDLFDKMPLRGFAQDVVSYATLIEGLCEAGRIDEAVE 66
Query: 357 --------DLYEFAM----ACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVV------RV 398
D++ +A C + L R + + R ++ VV R
Sbjct: 67 LFGEMDQPDMHMYAALVKGLCNAERGEEGLLMLRRMKELGWRPSTRAYAAVVDFRCRERK 126
Query: 399 FRENGNVLTD----------AMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSK 448
+E +L + +V+ A GRM + ++L+ M+ G + +
Sbjct: 127 AKEAEEMLQEMFEKGLAPCVVTCTAVINAYCKEGRMSDALRVLELMKLRGCKPNVWTYNA 186
Query: 449 IAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKE 508
+ + GK +A ++ M A G + + LI+G C+ G ++ A +++E +
Sbjct: 187 LVQGFCNEGKVHKAMTLLNKMRACGVNPDAVTYNLLIRGQCIDGHIESAFRLL-RLMEGD 245
Query: 509 GTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKD 568
G Y + L+N C R AC + + +KP T+ LI N L + G D
Sbjct: 246 GLIADQYTYNALINALCKDGRTDQACSLFDS-LETRGIKPNAVTFNSLI-NGLCKSGKAD 303
Query: 569 -ALSLLCLMKDHGFPP---FVDPFIKYVSKSGTSDDAIAFLKGMTSK 611
A L M G P FI+++ K S + ++F+ M K
Sbjct: 304 IAWKFLEKMVSAGCTPDTYTYSSFIEHLCKMKGSQEGLSFIGEMLQK 350
Score = 42.0 bits (97), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 45/186 (24%), Positives = 76/186 (40%), Gaps = 10/186 (5%)
Query: 460 DEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDL 519
D A + D M G + +LI+G C AG +D+A + F +M + + +A
Sbjct: 27 DVARDLFDKMPLRGFAQDVVSYATLIEGLCEAGRIDEAVELFGEMDQPDMHMYAA----- 81
Query: 520 LVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDH 579
LV C+ R + + ++E +P Y ++ +R K+A +L M +
Sbjct: 82 LVKGLCNAERGEEGLLMLRR-MKELGWRPSTRAYAAVVDFRCRERKAKEAEEMLQEMFEK 140
Query: 580 GFPPFV---DPFIKYVSKSGTSDDAIAFLKGMTSKRF-PSMSVVLCLFAAFFQARRHSEA 635
G P V I K G DA+ L+ M + P++ L F + +A
Sbjct: 141 GLAPCVVTCTAVINAYCKEGRMSDALRVLELMKLRGCKPNVWTYNALVQGFCNEGKVHKA 200
Query: 636 QDLLSK 641
LL+K
Sbjct: 201 MTLLNK 206
Score = 41.2 bits (95), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 65/314 (20%), Positives = 118/314 (37%), Gaps = 33/314 (10%)
Query: 293 ESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMV 352
E+ +K + ++N++ + L + D WK L++M S G + T + +
Sbjct: 278 ETRGIKPNAVTFNSLINGLCKSGKADIAWKFLEKMVSAGCTPDTYTYSSFIEHLCKMKGS 337
Query: 353 KEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRE------NGNVL 406
+E + + KPS T IV+ K L R + V R + E N +V+
Sbjct: 338 QEGLSFIGEMLQKDVKPSTVNYT-----IVIHKLLKERNYGLVARTWGEMVSSGCNPDVV 392
Query: 407 TDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFM 466
T + ++A GR+ E +L M + G + + + +S G+ D A +
Sbjct: 393 T---YTTSMRAYCIEGRLNEAENVLMEMSKNGVTVDTMAYNTLMDGHASIGQTDHAVSIL 449
Query: 467 DHMEASGSDVGDKMWVSLIK-----------------GHCVAGDLDKAADCFQKMVEKEG 509
M + S + L++ G A +L F M + E
Sbjct: 450 KQMTSVASVPNQFTYFILLRHLVRMRLVEDVLPLTPAGVWKAIELTDVFGLFDVMKKNEF 509
Query: 510 TSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDA 569
++G +L + R +A V + ++E + Y L+ + + DA
Sbjct: 510 LPNSGTYSSIL-EGFSEDGRTEEATSLV-SLMKEDSISLNEDIYTALVTCFCKSKRYLDA 567
Query: 570 LSLLCLMKDHGFPP 583
L+C M HGF P
Sbjct: 568 WVLVCSMIQHGFIP 581
>gi|297805886|ref|XP_002870827.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297316663|gb|EFH47086.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 582
Score = 62.0 bits (149), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 78/372 (20%), Positives = 142/372 (38%), Gaps = 34/372 (9%)
Query: 237 VASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLG-----DEPKKALIFFRWA 291
+A IC V W + ++ ++ + + ++ V+ +L P + F+ W
Sbjct: 13 IAQSICATVLKGNWKNILKHKVD--SGLLKSSIITQVISELSLYSGYGGPSLSWSFYSWT 70
Query: 292 EESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSK--------------GYEMEME 337
+ KH S M +L + + ++LD++ + G + E
Sbjct: 71 DSLPSCKHSLQSSWKMILILTKHNHFKTAHQLLDKLSQRELLSSPLVLRSLVGGVSEDPE 130
Query: 338 TCVKVLGR----FSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDM--RL 391
V +++ M+ +++ ++E M+C KP + CT LL +V + D ++
Sbjct: 131 VLSHVFSWLMIFYAKSGMINDSIAVFEQIMSCGLKPHLQACTVLLNSLVKERLTDTVWKI 190
Query: 392 FSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAF 451
F K+V++ G V + N ++ A G + K+L MEE G + +
Sbjct: 191 FKKMVKL----GVVANIHVYNVLVHACSKSGDSEKAEKLLSEMEEKGVFPDIFTYNTLIS 246
Query: 452 RLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTS 511
EA D ME SG + SLI G G + +A F+K+ +
Sbjct: 247 VYCKKSMHFEALSVQDRMERSGVAPDIVTYNSLIHGFSREGRMREATRLFRKIKGVVMAN 306
Query: 512 HAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALS 571
H Y L++ YC N ID + + P TY +++ L ++A
Sbjct: 307 HVTYTT--LIDGYCRMND-IDEALRLREVMESRGFCPGVVTYNSILRKLCEDGRIREANR 363
Query: 572 LLCLMKDHGFPP 583
LL M P
Sbjct: 364 LLTEMSVKKIEP 375
Score = 47.4 bits (111), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 76/344 (22%), Positives = 138/344 (40%), Gaps = 19/344 (5%)
Query: 304 YNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAM 363
YN + + ++ K+L EM KG ++ T ++ + +++M EA+ + +
Sbjct: 206 YNVLVHACSKSGDSEKAEKLLSEMEEKGVFPDIFTYNTLISVYCKKSMHFEALSVQDRME 265
Query: 364 ACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVG- 422
P + L+ S++ MR + R+FR+ V+ M N V + G
Sbjct: 266 RSGVAPDIVTYNSLIHGF--SREGRMR---EATRLFRKIKGVV---MANHVTYTTLIDGY 317
Query: 423 -RMGECNKILK---AMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGD 478
RM + ++ L+ ME GF + I +L G+ EAN + M + +
Sbjct: 318 CRMNDIDEALRLREVMESRGFCPGVVTYNSILRKLCEDGRIREANRLLTEMSVKKIEPDN 377
Query: 479 KMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVH 538
+LI +C D+ A +KM+E G Y+ L++ +C K +D K
Sbjct: 378 ITCNTLINAYCKIEDMVSAVKVKKKMIE-SGLKLDMYSYKALIHGFC-KVLELDNAKEEL 435
Query: 539 NCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPF---IKYVSKS 595
+ E L P ++ Y L+ Q + L + G P V + I+ + K
Sbjct: 436 FSMIEKGLSPGYSAYSWLVDGFYNQNKQDEITKLPEEFEKRGLCPDVALYRGLIRRICKL 495
Query: 596 GTSDDAIAFLKGMTSKRFPSMSVVLCLFA-AFFQARRHSEAQDL 638
D A + M K SV+ A A+++ + ++A L
Sbjct: 496 EQVDYAKVLFESMEKKGLMGDSVIYTTMAYAYWRTGKVTDASAL 539
Score = 40.0 bits (92), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 77/361 (21%), Positives = 130/361 (36%), Gaps = 13/361 (3%)
Query: 179 LVQEFWGLVDVMKKKGYGVASHVRNKMTEKFEKEGLESDLEKL------KGIFATGSIDN 232
L W + M K G HV N + K G EKL KG+F N
Sbjct: 183 LTDTVWKIFKKMVKLGVVANIHVYNVLVHACSKSGDSEKAEKLLSEMEEKGVFPDIFTYN 242
Query: 233 SIEKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAE 292
++ V + + D +ER ++ N L+ + ++A FR +
Sbjct: 243 TLISVYCKKSMHFEALSVQDRMERSGVAPDIVTYNSLIHGFSRE--GRMREATRLFR--K 298
Query: 293 ESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMV 352
G V + +Y + R + ID ++ + M S+G+ + T +L + E +
Sbjct: 299 IKGVVMANHVTYTTLIDGYCRMNDIDEALRLREVMESRGFCPGVVTYNSILRKLCEDGRI 358
Query: 353 KEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLN 412
+EA L K +P C L+ K DM KV + E+G L
Sbjct: 359 REANRLLTEMSVKKIEPDNITCNTLIN--AYCKIEDMVSAVKVKKKMIESGLKLDMYSYK 416
Query: 413 SVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEAS 472
+++ V + + L +M E G + S + + K+DE + + E
Sbjct: 417 ALIHGFCKVLELDNAKEELFSMIEKGLSPGYSAYSWLVDGFYNQNKQDEITKLPEEFEKR 476
Query: 473 GSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAID 532
G ++ LI+ C +D A F+ M EK+G + Y + D
Sbjct: 477 GLCPDVALYRGLIRRICKLEQVDYAKVLFESM-EKKGLMGDSVIYTTMAYAYWRTGKVTD 535
Query: 533 A 533
A
Sbjct: 536 A 536
>gi|356574874|ref|XP_003555568.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04760,
chloroplastic-like [Glycine max]
Length = 576
Score = 62.0 bits (149), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 81/371 (21%), Positives = 142/371 (38%), Gaps = 47/371 (12%)
Query: 340 VKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVF 399
+K L R + EA+ E + KP V CT L++ + SK+ + + +V+ +
Sbjct: 81 MKALNRLCKTGKYTEALYFLEQMVKRGYKPDVILCTKLIKGLFTSKRTEKAV--RVMEIL 138
Query: 400 RENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKK 459
+ G+ + A N+V+ R N+++ M+ GF + + L + GK
Sbjct: 139 EQYGDPDSFA-YNAVISGFCRSDRFDAANRVILRMKYRGFSPDVVTYNILIGSLCARGKL 197
Query: 460 DEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDL 519
D A + MD + + + LI+ + G +D A +M+ + G Y ++
Sbjct: 198 DLALKVMDQLLEDNCNPTVITYTILIEATIIHGSIDDAMRLLDEMMSR-GLQPDMYTYNV 256
Query: 520 LVNTYCSKNRAIDACKFVHNC-------------------------------VREYDLKP 548
+V C + A +FV N + +P
Sbjct: 257 IVRGMCKRGLVDRAFEFVSNLNTTPSLNLYNLLLKGLLNEGRWEAGERLMSDMIVKGCEP 316
Query: 549 WHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPP---FVDPFIKYVSKSGTSDDAIAFL 605
TY LI +L +A+ +L +MK+ G P DP I K G D AI F+
Sbjct: 317 NIVTYSVLISSLCRDGKAGEAVDVLRVMKEKGLNPDAYCYDPLISAFCKEGKVDLAIGFV 376
Query: 606 KGMTSKRF-PSMSVVLCLFAAFFQARRHSEAQDLLSK-----CPRYVRNHADVLNLLYSK 659
M S + P + + + + R EA ++ K CP ++ + L+S
Sbjct: 377 DDMISAGWLPDIVNYNTIMGSLCKKGRADEALNIFKKLEEVGCPPNASSYNTMFGALWSS 436
Query: 660 KSGGDSAPAVT 670
GD A+T
Sbjct: 437 ---GDKIRALT 444
Score = 50.1 bits (118), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 67/326 (20%), Positives = 133/326 (40%), Gaps = 13/326 (3%)
Query: 282 KKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVK 341
+KA+ E+ G D +YNA+ S R D D +V+ M+ +G+ ++ T
Sbjct: 129 EKAVRVMEILEQYG--DPDSFAYNAVISGFCRSDRFDAANRVILRMKYRGFSPDVVTYNI 186
Query: 342 VLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLD--MRLFSKVVRVF 399
++G R + A+ + + + P+V T L+ ++ +D MRL +++
Sbjct: 187 LIGSLCARGKLDLALKVMDQLLEDNCNPTVITYTILIEATIIHGSIDDAMRLLDEMM--- 243
Query: 400 RENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKK 459
G N +++ + + G ++ + + S N+ + + L + G+
Sbjct: 244 -SRGLQPDMYTYNVIVRGMC---KRGLVDRAFEFVSNLNTTPSLNLYNLLLKGLLNEGRW 299
Query: 460 DEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDL 519
+ M M G + + LI C G +A D + M EK G + Y D
Sbjct: 300 EAGERLMSDMIVKGCEPNIVTYSVLISSLCRDGKAGEAVDVLRVMKEK-GLNPDAYCYDP 358
Query: 520 LVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDH 579
L++ +C + + A FV + + L P Y ++ +L + +AL++ +++
Sbjct: 359 LISAFCKEGKVDLAIGFVDDMISAGWL-PDIVNYNTIMGSLCKKGRADEALNIFKKLEEV 417
Query: 580 GFPPFVDPFIKYVSKSGTSDDAIAFL 605
G PP + +S D I L
Sbjct: 418 GCPPNASSYNTMFGALWSSGDKIRAL 443
Score = 43.5 bits (101), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 56/240 (23%), Positives = 97/240 (40%), Gaps = 6/240 (2%)
Query: 322 KVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKI 381
+++ +M KG E + T ++ EAVD+ P C L+
Sbjct: 304 RLMSDMIVKGCEPNIVTYSVLISSLCRDGKAGEAVDVLRVMKEKGLNPDAYCYDPLISAF 363
Query: 382 VVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIA 441
++D+ + V G + N+++ +L GR E I K +EE G
Sbjct: 364 CKEGKVDLAI--GFVDDMISAGWLPDIVNYNTIMGSLCKKGRADEALNIFKKLEEVGCPP 421
Query: 442 SSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCF 501
+++ + + L S+G K A + M ++G D + SLI C G +D+A
Sbjct: 422 NASSYNTMFGALWSSGDKIRALTMILEMLSNGVDPDRITYNSLISSLCRDGMVDEAIGLL 481
Query: 502 QKMVEKE-GTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNL 560
M E + Y I LL C +R +DA + + V + +P TTY L++ +
Sbjct: 482 VDMERTEWQPTVISYNIVLL--GLCKAHRIVDAIEVLAVMV-DNGCQPNETTYTLLVEGV 538
>gi|255540805|ref|XP_002511467.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223550582|gb|EEF52069.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 482
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 77/379 (20%), Positives = 151/379 (39%), Gaps = 18/379 (4%)
Query: 238 ASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFV 297
A+ + ++ + + L ++ ++ LV ++ +L + KAL FF+
Sbjct: 29 ATTLAALILNSTNSQTLAESLHSPSIQWTPQLVNTILKRLWNHGPKALHFFKILSHHPSY 88
Query: 298 KHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVD 357
H SS++ + R W ++ MRS T + R++ AV
Sbjct: 89 CHQASSFDHAIDICARLRDFRTLWFLVSRMRSCRLGPSPRTFAIIAERYAAMGKPHRAVT 148
Query: 358 LYEFAMACKNKPSVNCCTFLLRKIVVSKQLDM--RLFSKVVRVFRENGNVLTDAMLNSVL 415
++ ++ +L + SK+++M LF + F+ + N ++
Sbjct: 149 VFMSMHEYGCFQDLSSFNTILDVLCKSKRVEMAYNLFKALKGKFKADC-----VSYNIIV 203
Query: 416 KALISVGRMGECNKILKAMEEGGF---IASSNMKSKIAFRLSSAGKKDEANEFMDHMEAS 472
+ R + ++LK M E G + + N+ FR AG+ +EA F M+
Sbjct: 204 NGWCLIKRTPKALEMLKEMVERGLTPNLTTYNIMLNGYFR---AGQTNEAWGFFLEMKKR 260
Query: 473 GSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAID 532
D+ + S+I G V G++ +A + F +MV K+G + + L+ C K+ +
Sbjct: 261 KCDIDVVTYTSVIHGLGVVGEIKRARNVFNQMV-KDGVLPSVATFNALIQILCKKDSVEN 319
Query: 533 ACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPF---I 589
A V+ P TY +I+ L + A+ L+ M+D P V + I
Sbjct: 320 AILIFEEMVKR-GYVPNSITYNLVIRGLCHVGEMQRAMELMERMEDDDCEPNVQTYNILI 378
Query: 590 KYVSKSGTSDDAIAFLKGM 608
+Y +G + + + M
Sbjct: 379 RYFCDAGEIEKGLDLFQKM 397
>gi|302787647|ref|XP_002975593.1| hypothetical protein SELMODRAFT_103638 [Selaginella moellendorffii]
gi|300156594|gb|EFJ23222.1| hypothetical protein SELMODRAFT_103638 [Selaginella moellendorffii]
Length = 471
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 76/354 (21%), Positives = 145/354 (40%), Gaps = 13/354 (3%)
Query: 303 SYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFA 362
+YN++ + +E + ++ M KG+E ++ T ++ + V EA+++ F
Sbjct: 80 TYNSLLNAFCKETKMKEAMELFKTMAEKGFEPDVVTYSTIISGLCKTGKVTEALEML-FH 138
Query: 363 MACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVG 422
+ S N + + K ++ K++ G V + N++L L +G
Sbjct: 139 KMIERGCSANTVAYNALINGLCKDENIERAYKLLEEMASKGYVPDNITYNTILSGLCRMG 198
Query: 423 RMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWV 482
++ E + +M G+ + + L GK DEA + + A G +
Sbjct: 199 KVSEAKQFFDSMPSRGYSPDVVAYNGLLDALYKEGKTDEAMKLFKDVIAKGYMPDTVTYN 258
Query: 483 SLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVR 542
S++ G ++D+A + F+KMV G + G ++++ +C + DA K + +
Sbjct: 259 SILLGLARKSNMDEAEEMFKKMV-ASGCAPNGATYSIVLSGHCRAKKVDDAHKVLEE-MS 316
Query: 543 EYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPF---IKYVSKSGTSD 599
+ P TY L+ L A L M D+G P + + + + K+
Sbjct: 317 KIGAVPDVVTYNILLDGLCKTNLVDKAHELFSTMVDNGCAPDIVSYSVVLNGLCKTNKVH 376
Query: 600 DA-IAFLKGMTSKRFPSMSVVLCLFAAFFQARRHSEAQDLL-----SKC-PRYV 646
DA + F + + K P + L +A + EA+DLL S C P YV
Sbjct: 377 DARVLFDRMIERKLVPDVVTFNILMDGLCKAGKLDEAKDLLDQMTCSGCAPDYV 430
Score = 47.4 bits (111), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 56/262 (21%), Positives = 99/262 (37%), Gaps = 7/262 (2%)
Query: 385 KQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSN 444
KQ +R K+ +NG N ++ GR+ E N++ + M G S
Sbjct: 20 KQGKLRDGYKLFEQMLDNGISPDGIEYNILIDGYAKKGRVDEANRLYEEMVSVGLEPSIY 79
Query: 445 MKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAAD-CFQK 503
+ + K EA E M G + + ++I G C G + +A + F K
Sbjct: 80 TYNSLLNAFCKETKMKEAMELFKTMAEKGFEPDVVTYSTIISGLCKTGKVTEALEMLFHK 139
Query: 504 MVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQ 563
M+E+ G S A + L+N C A K + + P + TY ++ L
Sbjct: 140 MIER-GCSANTVAYNALINGLCKDENIERAYKLLEEMASK-GYVPDNITYNTILSGLCRM 197
Query: 564 RGFKDALSLLCLMKDHGFPPFV---DPFIKYVSKSGTSDDAIAFLKGMTSKRF-PSMSVV 619
+A M G+ P V + + + K G +D+A+ K + +K + P
Sbjct: 198 GKVSEAKQFFDSMPSRGYSPDVVAYNGLLDALYKEGKTDEAMKLFKDVIAKGYMPDTVTY 257
Query: 620 LCLFAAFFQARRHSEAQDLLSK 641
+ + EA+++ K
Sbjct: 258 NSILLGLARKSNMDEAEEMFKK 279
>gi|255660934|gb|ACU25636.1| pentatricopeptide repeat-containing protein [Tamonea boxiana]
Length = 484
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 78/364 (21%), Positives = 147/364 (40%), Gaps = 48/364 (13%)
Query: 258 LRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCI 317
+R+L +F ++LV V+ + + AL FFRW E S +H+ ++ + +LGR +
Sbjct: 3 IRNLVPSFDHELVYNVLHG-SKKSEHALQFFRWVERSNLFEHNRETHLKIIEILGRASKL 61
Query: 318 DRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFL 377
+ +L +M KG E + + V ++ + + +V+E+V
Sbjct: 62 NHARCILLDMPKKGLEWDEDLWVLMIDSYGKAGIVQESV--------------------- 100
Query: 378 LRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEG 437
+LF K+ E G T +++ K ++ GR + M
Sbjct: 101 ------------KLFQKM----EELGVERTIKSYDALFKVILRRGRYMMAKRYFNKMLSE 144
Query: 438 GFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKA 497
G + + + + + GK + AN F + M+ + ++I G+ +++A
Sbjct: 145 GIEPTRHTFNVMIWGFFLCGKVETANRFFEDMKXREISPDVITYNTMINGYYRVKKIEEA 204
Query: 498 ADCFQKMVEKEGTSHAGYAIDL--LVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEE 555
F VE +G + + L+ Y S +R DA + ++ + +KP TY
Sbjct: 205 EKYF---VEMKGRNIEPTVVTYTTLIKGYVSVDRVDDALTLLEE-MKGFGIKPNAITYST 260
Query: 556 LIKNLLVQRGFKDALSLLCLMKDHGFPPFVDP-FIKYVS---KSGTSDDAIAFLKGMTSK 611
L+ L +A +L M D P + F++ +S K+G D A LK M
Sbjct: 261 LLPGLCNAEKMSEASGILKEMVDKYIAPKDNSIFLRLISGQCKAGNLDAAADVLKAMIRL 320
Query: 612 RFPS 615
P+
Sbjct: 321 SVPT 324
Score = 49.7 bits (117), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 107/497 (21%), Positives = 201/497 (40%), Gaps = 79/497 (15%)
Query: 128 FTHEMVLKVLKNLESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLV 187
F HE+V VL + S + A +FF WV + +T+ ++ I+G + ++
Sbjct: 10 FDHELVYNVLHGSKKS-EHALQFFRWVERSNLFEHNRETHLKIIEILGRASKLNHARCIL 68
Query: 188 DVMKKKGYGVASHVRNKMTEKFEKEGLESDLEKLKGIFATGSIDNSIEKVASRICKVVRS 247
M KKG + M + + K G+ + KL +E++
Sbjct: 69 LDMPKKGLEWDEDLWVLMIDSYGKAGIVQESVKLF---------QKMEELG--------- 110
Query: 248 DIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAM 307
VER ++ + F V+ + G F + E ++ ++N M
Sbjct: 111 ------VERTIKSYDALFK------VILRRGRYMMAKRYFNKMLSEG--IEPTRHTFNVM 156
Query: 308 A---SVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMA 364
+ G+ + +RF+ ++M+ + ++ T ++ + ++EA + Y M
Sbjct: 157 IWGFFLCGKVETANRFF---EDMKXREISPDVITYNTMINGYYRVKKIEEA-EKYFVEMK 212
Query: 365 CKN-KPSVNCCTFLLRKIVVSKQLDMRL-FSKVVRVFRENGNVLTDAMLNSVLKALISVG 422
+N +P+V T L++ V ++D L + ++ F N +T +++L L +
Sbjct: 213 GRNIEPTVVTYTTLIKGYVSVDRVDDALTLLEEMKGFGIKPNAIT---YSTLLPGLCNAE 269
Query: 423 RMGECNKILKAMEEGGFIASSNMKSKIAFRLSS----AGKKDEANEFMDHMEASGSDVGD 478
+M E + ILK M + +IA + + I RL S AG D A + + M
Sbjct: 270 KMSEASGILKEMVDK-YIAPKD--NSIFLRLISGQCKAGNLDAAADVLKAMIRLSVPTEA 326
Query: 479 KMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVH 538
+ LI+ +C AGD +KA K++EK D+++ S + A +
Sbjct: 327 GHYGVLIENYCKAGDYEKAIKLLDKLIEK----------DIVLRPQSSLHMEPSA----Y 372
Query: 539 NCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPFIKYVSKSGTS 598
N + EY T E + L++ G +D +L L++ H S+ G+
Sbjct: 373 NPLVEYLCNNGQTAKAETLVRQLMKLGVQDPTALNTLIRGH-------------SQEGSP 419
Query: 599 DDAIAFLKGMTSKRFPS 615
D A LK M ++ S
Sbjct: 420 DSAFELLKIMLRRKIDS 436
>gi|297809467|ref|XP_002872617.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297318454|gb|EFH48876.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 584
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 64/293 (21%), Positives = 123/293 (41%), Gaps = 5/293 (1%)
Query: 303 SYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFA 362
+YN + + L ++ +KV DEMR +G + T ++G EA ++ +
Sbjct: 270 TYNCVMNQLCKDGRTKDAFKVFDEMRERGVSCNIVTYNTLIGGLCREMKANEANEVMDQM 329
Query: 363 MACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVG 422
+ P++ L+ ++L L + R + G + N ++ G
Sbjct: 330 KSDGINPNLITYNTLIDGFCGVRKLGKAL--SLCRDLKSRGLSPSLVTYNILVSGFCKKG 387
Query: 423 RMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWV 482
K++K MEE G S + + + + ++A + ME G +
Sbjct: 388 DTSGAGKVVKEMEERGIKPSKVTYTILIDTFARSDNMEKAIQLRSSMEELGLTPDVHTYS 447
Query: 483 SLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVR 542
LI G C+ G +++A+ F+ MVEK+ + + +V YC + + A + +
Sbjct: 448 VLIHGFCIKGRMNEASRLFKSMVEKKFEPNE-VIYNTMVLGYCKEGSSYRALRLFRE-ME 505
Query: 543 EYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPFIKYVSKS 595
E +L P +Y +I+ L +R K+A L+ M D G P D + +S++
Sbjct: 506 EKELPPNVASYRYMIEVLCKERKSKEAEGLVEKMIDSGIGP-SDSILNLISRA 557
>gi|255586139|ref|XP_002533731.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223526356|gb|EEF28650.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 835
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 83/338 (24%), Positives = 142/338 (42%), Gaps = 43/338 (12%)
Query: 283 KALIFFRWAEESGFVKHDESSYNAMASVLGRED-CIDRFWKVLDEMRSKGYEMEMETCVK 341
+A+ F ESG + +YN M V G+ D+ ++LDEMRS+G + + TC
Sbjct: 240 RAIEIFERMNESG-LSPSLVTYNVMLDVYGKMGRSWDKILELLDEMRSRGLDFDEFTCST 298
Query: 342 VLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLL----RKIVVSKQL---------- 387
VL ++ EA + + + KP LL + + S+ L
Sbjct: 299 VLSACGREGLIDEAREFFSGLKSEGYKPGTVTYNALLHVFGKAGIFSEALSVLSEMEENN 358
Query: 388 ---DMRLFSKVVRV-----FRENGNVLTDAML------NSVLKALI--SVGRMGECNKIL 431
D +++VV F E G V+ DAM N+V I + GR+G+ +K L
Sbjct: 359 CPPDAVTYNEVVAAYVRAGFHEEGAVVIDAMASKGIMPNAVTYTTIINAYGRVGDIDKAL 418
Query: 432 K---AMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGH 488
+ M E G + + + + L +E + + HM+ +G W +++
Sbjct: 419 EMFDQMMELGCVPNVATYNAVLGMLGKKSLSEEMMKILGHMKLNGCSPNHITWNTML-AM 477
Query: 489 CVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTY--CSKNRAIDACKFVHNCVREYDL 546
C + K + + ++ G + L++ Y C N DA K +H + +
Sbjct: 478 CGKKGMHKYVNQVFREMKNCGFEPDRDTFNTLISAYGRCGSNN--DAAK-MHEEMIKAGF 534
Query: 547 KPWHTTYEELIKNLLVQRG-FKDALSLLCLMKDHGFPP 583
P TY L+ N L +RG +K A S++ M++ GF P
Sbjct: 535 SPCINTYNALL-NALARRGDWKAAESVILDMRNKGFRP 571
>gi|359490245|ref|XP_002268526.2| PREDICTED: pentatricopeptide repeat-containing protein
At5g62370-like [Vitis vinifera]
Length = 1101
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 59/270 (21%), Positives = 117/270 (43%), Gaps = 5/270 (1%)
Query: 325 DEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVS 384
D + ++G + ET ++ + ++EA+ ++ + P C +LR++
Sbjct: 117 DYVIARGIIPDSETLNSMVICYCNLGKLEEAMAHFDRLFEVDSFPCKPACNAMLRELCAR 176
Query: 385 KQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEE-GGFIASS 443
+++ + F VR+ + G ++ N ++ L G + E + M E G A+
Sbjct: 177 ERV-LEAFDYFVRI-NDVGILMGLWCFNRLIDGLCDKGHVDEAFYMFDTMRERTGLPATI 234
Query: 444 NMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQK 503
++ + + L + +EA F+ ME+ G + M+ SLI G+C + A F +
Sbjct: 235 HLYKTLFYGLCRQERVEEAELFVGEMESEGHFIDKMMYTSLIHGYCRGKKMRTAMRVFLR 294
Query: 504 MVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQ 563
M+ K G Y + L++ + K D +HN + E+ L+P TY +I+ +
Sbjct: 295 ML-KMGCDPDTYTYNTLIHGFV-KLGLFDKGWILHNQMSEWGLQPNVVTYHIMIRRYCEE 352
Query: 564 RGFKDALSLLCLMKDHGFPPFVDPFIKYVS 593
AL+LL M P V + ++
Sbjct: 353 GKVDCALTLLSSMSSFNLTPSVHSYTVLIT 382
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 64/343 (18%), Positives = 134/343 (39%), Gaps = 43/343 (12%)
Query: 300 DESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLY 359
D +YN + + D+ W + ++M G + + T ++ R+ E V A+ L
Sbjct: 303 DTYTYNTLIHGFVKLGLFDKGWILHNQMSEWGLQPNVVTYHIMIRRYCEEGKVDCALTLL 362
Query: 360 EFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALI 419
+ PSV+ T L + +++EN
Sbjct: 363 SSMSSFNLTPSVHSYTVL-----------------ITALYKEN----------------- 388
Query: 420 SVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDK 479
R+ E ++ K M + G + + + + + A + + + +G ++ D
Sbjct: 389 ---RLVEVEELYKKMLDIGVVPDHVLFFTLMQKQPKGHELHLALKILQAIAKNGCNL-DL 444
Query: 480 MWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHN 539
+S H D+++ +C + + + A A + ++ C+ + A F+
Sbjct: 445 CLLSTSATHSPTQDVEQEIECLLGEIVRRNFALADVAFGIFISALCAAGKTDAALLFMDK 504
Query: 540 CVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPFIKYVSKSGTSD 599
V +P +TY LIK L +R +DA SL+ LM+++G P + ++ V +
Sbjct: 505 MV-SLGCRPLLSTYNSLIKCLFQERLVEDAKSLIDLMQENGIVPDLATYLIMVHEHCNHG 563
Query: 600 D---AIAFLKGMTSKRF-PSMSVVLCLFAAFFQARRHSEAQDL 638
D A L M + PS+++ + + +R EA+++
Sbjct: 564 DLASAFGLLDQMNERGLKPSVAIYDSIIGCLSRRKRILEAENV 606
Score = 48.5 bits (114), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 89/443 (20%), Positives = 174/443 (39%), Gaps = 40/443 (9%)
Query: 166 TYNLMLRIVGVHGLVQEFWGLVDVMKKKG-------YGVASHVRNKMTEKFEKEGLESDL 218
TYN +++ + LV++ L+D+M++ G Y + H + GL +
Sbjct: 516 TYNSLIKCLFQERLVEDAKSLIDLMQENGIVPDLATYLIMVHEHCNHGDLASAFGLLDQM 575
Query: 219 EKLKGIFATGSIDNSIEKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLG 278
+ +G+ + +I +SI SR +++ ++ +V + + + V D + +V G
Sbjct: 576 NE-RGLKPSVAIYDSIIGCLSRRKRILEAE----NVFKMMLEAGV--DPDAIIYVTMISG 628
Query: 279 DEPKKALI----FFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEM 334
+ I F E GF + SY A+ S L +E+ ID+ L +M G+
Sbjct: 629 YSKNRRAIEARQLFDKMIEHGF-QPSSHSYTAVISGLVKENMIDKGCSYLSDMLKDGFVP 687
Query: 335 EMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSK 394
++ +F + ++ A L + + + + C L+ + + R +
Sbjct: 688 NTVLYTSLINQFLRKGELEFAFRLVDLMDRNQIECDMITCIALVSGVSRNITPVRRRWYH 747
Query: 395 VVRVFRENGNVLTDAMLNSVLKALISVGR-------MGECNKI-------LKAMEEGGFI 440
V ++G+ +L +L + R G KI ++ ++ F+
Sbjct: 748 V-----KSGSARVREILLHLLHQSFVIPRENNLSFPRGSPRKIKYFALNLMQKIKGSSFM 802
Query: 441 ASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADC 500
+ + + I A +A + M+ G + LI GH G++D A
Sbjct: 803 PNLYLYNGIISGFCRANMIQDAYNHFELMQTEGVCPNQVTFTILINGHTRFGEIDHAIGL 862
Query: 501 FQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNL 560
F KM +G + G + L+ C R +DA H + + L P ++YE+L+K L
Sbjct: 863 FNKM-NADGLAPDGITYNALIKGLCKAGRLLDALSVSHT-MHKRGLFPNKSSYEKLLKCL 920
Query: 561 LVQRGFKDALSLLCLMKDHGFPP 583
A + M H + P
Sbjct: 921 CASHLGVHAFKIFEEMLSHDYVP 943
>gi|359473390|ref|XP_002268680.2| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
mitochondrial-like [Vitis vinifera]
Length = 748
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 82/365 (22%), Positives = 145/365 (39%), Gaps = 44/365 (12%)
Query: 260 DLNVTFSN--DLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCI 317
D+ V+F + + + + G +P+ IFF+ E+G +
Sbjct: 159 DVGVSFGHFVEQLIYTYKDWGSDPRVFDIFFQVLVEAGM--------------------L 198
Query: 318 DRFWKVLDEMRSKGYEMEMETCVKVLGRFSER-NMVKEAVDLY-EF--AMACKNKPSVNC 373
D K+ D+M + G + +++C + SE + +K A+ ++ EF C N S N
Sbjct: 199 DEARKLFDKMLNYGLLISVDSCNLFISHLSEDLDGIKIALKVFVEFPEVGVCWNTASYNI 258
Query: 374 CTF---LLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAM-LNSVLKALISVGRMGECNK 429
T L ++V + QL +++ E + D + ++V+ VG + K
Sbjct: 259 ITHSLCQLGRVVEAHQLLLQM---------ELRGCIPDVISYSTVINGYCQVGELQRVLK 309
Query: 430 ILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHC 489
+++ M+ G + + + L GK EA + M + G ++ +LI G C
Sbjct: 310 LIEEMQIKGLKPNPYTYNGVILLLCKTGKVAEAERVLREMISEGIAPDGVIYTTLIDGFC 369
Query: 490 VAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPW 549
G++ A F +M +K S ++ C R ++A K H V + L+P
Sbjct: 370 KLGNVSSAYRLFDEM-QKRKISPDFITYTAVICGLCQTGRVMEADKLFHEMVCK-RLEPD 427
Query: 550 HTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPFIKY---VSKSGTSDDAIAFLK 606
TY LI + K+A SL M G P + + + K G D A L
Sbjct: 428 EVTYTALIDGYCKEGKMKEAFSLHNQMLQMGLTPNIVTYTALADGLCKCGEVDTANELLH 487
Query: 607 GMTSK 611
M K
Sbjct: 488 EMCRK 492
Score = 58.5 bits (140), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 73/345 (21%), Positives = 139/345 (40%), Gaps = 12/345 (3%)
Query: 297 VKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAV 356
+K + +YN + +L + + +VL EM S+G + ++ F + V A
Sbjct: 319 LKPNPYTYNGVILLLCKTGKVAEAERVLREMISEGIAPDGVIYTTLIDGFCKLGNVSSAY 378
Query: 357 DLYEFAMACKNKPSVNCCTFLLRKIVVSKQL--DMRLFSKVVRVFRENGNVLTDAMLNSV 414
L++ K P T ++ + + ++ +LF ++V E V A+++
Sbjct: 379 RLFDEMQKRKISPDFITYTAVICGLCQTGRVMEADKLFHEMVCKRLEPDEVTYTALIDGY 438
Query: 415 LKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGS 474
K G+M E + M + G + + +A L G+ D ANE + M G
Sbjct: 439 CKE----GKMKEAFSLHNQMLQMGLTPNIVTYTALADGLCKCGEVDTANELLHEMCRKGL 494
Query: 475 DVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDAC 534
++ + SL+ G C AG++D+A + M E G L++ YC + A
Sbjct: 495 ELNIYTYNSLVNGLCKAGNIDQAVKLMKDM-EVAGFHPDAVTYTTLMDAYCKSREMVRAH 553
Query: 535 KFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPFIKYVSK 594
+ + + + +L+P T+ L+ + +D LL M + G P + + +
Sbjct: 554 ELLRQML-DRELQPTVVTFNVLMNGFCMSGMLEDGEKLLKWMLEKGIMPNATTYNSLIKQ 612
Query: 595 SGTSDDAIA---FLKGMTSKR-FPSMSVVLCLFAAFFQARRHSEA 635
++ A +GM +K P + L +AR EA
Sbjct: 613 YCIRNNMRATTEIYRGMCAKGVVPDGNTYNILIKGHCKARNMKEA 657
Score = 39.3 bits (90), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 45/205 (21%), Positives = 82/205 (40%), Gaps = 2/205 (0%)
Query: 303 SYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFA 362
+Y A+A L + +D ++L EM KG E+ + T ++ + + +AV L +
Sbjct: 465 TYTALADGLCKCGEVDTANELLHEMCRKGLELNIYTYNSLVNGLCKAGNIDQAVKLMKDM 524
Query: 363 MACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVG 422
P T L+ S++ M +++R + T N ++ G
Sbjct: 525 EVAGFHPDAVTYTTLMDAYCKSRE--MVRAHELLRQMLDRELQPTVVTFNVLMNGFCMSG 582
Query: 423 RMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWV 482
+ + K+LK M E G + ++ + + + E M A G +
Sbjct: 583 MLEDGEKLLKWMLEKGIMPNATTYNSLIKQYCIRNNMRATTEIYRGMCAKGVVPDGNTYN 642
Query: 483 SLIKGHCVAGDLDKAADCFQKMVEK 507
LIKGHC A ++ +A + MV K
Sbjct: 643 ILIKGHCKARNMKEAWFLHRDMVGK 667
>gi|242035667|ref|XP_002465228.1| hypothetical protein SORBIDRAFT_01g034600 [Sorghum bicolor]
gi|241919082|gb|EER92226.1| hypothetical protein SORBIDRAFT_01g034600 [Sorghum bicolor]
Length = 557
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 63/292 (21%), Positives = 117/292 (40%), Gaps = 13/292 (4%)
Query: 323 VLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIV 382
+L + +G + + ++G F+ + D ++ P ++ + V
Sbjct: 200 LLRDAARRGSPLPADAAADLIGAFAADGNFGKVSDTLHLMISTGCTPDK-----VIYQRV 254
Query: 383 VSKQLDMRLFSKVVRVFRE---NGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGF 439
+ R+ + +RVFRE G + + ++V+ L + +G+ ++ M + G
Sbjct: 255 IHGLFRRRMGGEALRVFREIKQRGYQIDRIIYSTVIHGLCEMRLIGDAQQMWDEMVDRGI 314
Query: 440 IASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAAD 499
+ + G ++A + D M A G LIKG CV G + A +
Sbjct: 315 QPNEYAYCSLVSYYCRVGDLEKARKVYDEMLAKGFKQTTVSCNILIKGFCVHGRVYDALE 374
Query: 500 CFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKN 559
F++M K G H D L+ C + +D+ ++ L+P +T+ LI
Sbjct: 375 VFEEMSVK-GIKHDVITYDTLIRGLCKVGK-LDSAIQMYEWFLSSGLEPTVSTFSPLIGA 432
Query: 560 LLVQRGFKDALSLLCLMKDHGFPPFV---DPFIKYVSKSGTSDDAIAFLKGM 608
+ A+ L+ LM+ G P V D I K SD+ +A+L GM
Sbjct: 433 MCENGQVHAAVDLINLMRAKGLEPLVWSNDRIINGFCKINRSDEGMAWLAGM 484
Score = 49.3 bits (116), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 54/261 (20%), Positives = 109/261 (41%), Gaps = 6/261 (2%)
Query: 322 KVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPS-VNCCTFLLRK 380
+V E++ +GY+++ V+ E ++ +A +++ + +P+ C+ +
Sbjct: 269 RVFREIKQRGYQIDRIIYSTVIHGLCEMRLIGDAQQMWDEMVDRGIQPNEYAYCSLVSYY 328
Query: 381 IVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFI 440
V D+ KV G T N ++K GR+ + ++ + M G
Sbjct: 329 CRVG---DLEKARKVYDEMLAKGFKQTTVSCNILIKGFCVHGRVYDALEVFEEMSVKGIK 385
Query: 441 ASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADC 500
+ L GK D A + + +SG + + LI C G + A D
Sbjct: 386 HDVITYDTLIRGLCKVGKLDSAIQMYEWFLSSGLEPTVSTFSPLIGAMCENGQVHAAVDL 445
Query: 501 FQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNL 560
M K G ++ D ++N +C NR+ + ++ +++ ++KP T++ L+++L
Sbjct: 446 INLMRAK-GLEPLVWSNDRIINGFCKINRSDEGMAWLAGMLKD-NIKPRKQTFDYLVESL 503
Query: 561 LVQRGFKDALSLLCLMKDHGF 581
DAL +L +M GF
Sbjct: 504 STCGRLDDALLVLNIMFKVGF 524
Score = 40.0 bits (92), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 46/232 (19%), Positives = 94/232 (40%), Gaps = 3/232 (1%)
Query: 297 VKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAV 356
++ +E +Y ++ S R +++ KV DEM +KG++ +C ++ F V +A+
Sbjct: 314 IQPNEYAYCSLVSYYCRVGDLEKARKVYDEMLAKGFKQTTVSCNILIKGFCVHGRVYDAL 373
Query: 357 DLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLK 416
+++E K V L+R + +LD + ++ F +G T + + ++
Sbjct: 374 EVFEEMSVKGIKHDVITYDTLIRGLCKVGKLDSAI--QMYEWFLSSGLEPTVSTFSPLIG 431
Query: 417 ALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDV 476
A+ G++ ++ M G +I + DE ++ M
Sbjct: 432 AMCENGQVHAAVDLINLMRAKGLEPLVWSNDRIINGFCKINRSDEGMAWLAGMLKDNIKP 491
Query: 477 GDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKN 528
+ + L++ G LD A M K G +A +LV+ C+ N
Sbjct: 492 RKQTFDYLVESLSTCGRLDDALLVLNIMF-KVGFGLGRFACTILVDKLCTGN 542
>gi|125526112|gb|EAY74226.1| hypothetical protein OsI_02107 [Oryza sativa Indica Group]
Length = 540
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 100/468 (21%), Positives = 180/468 (38%), Gaps = 75/468 (16%)
Query: 117 ISKQLELSGVVFTHEMVLKVLKNLESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVGV 176
I+ L+ GV + ++V +VLKNL ++ A FF W ++ R S++ ++ ++ +G
Sbjct: 107 IAPVLDALGVTVSPQLVAEVLKNLSNAGILALAFFRWAERQQGFRYSAEGFHNLIEALGK 166
Query: 177 HGLVQEFWGLVDVMKKKG-------------YGVASHVRNKMTEKFEKE---GLESDLEK 220
+ W LV+ M+ + Y A V+ + E FEK GL++DL
Sbjct: 167 IKQFRLVWSLVEAMRCRSCLSKDTFKIIVRRYARARKVKEAV-ETFEKMSSFGLKTDL-- 223
Query: 221 LKGIFATGSIDNSIEKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDE 280
S N + + S+ +V ++ +++R+ R F DL + V G
Sbjct: 224 --------SDYNWLIDILSKSKQVKKAHAIFKEMKRKGR-----FIPDLKTYTVLMEGWG 270
Query: 281 PKKALIFFRWAEESGF---VKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEME 337
+K L+ + + +K D +Y + S + D KV EM G
Sbjct: 271 HEKDLLMLKAVYQEMLDAGIKPDVVAYGMLISAFCKSGKCDEAIKVFHEMEESG------ 324
Query: 338 TCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVR 397
C P V C L+ + ++LD L K +
Sbjct: 325 ---------------------------CMPSPHVYC--MLINGLGSMERLDEAL--KYFQ 353
Query: 398 VFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAG 457
+ +E+G + N+V+ A K++ M + G ++ I L +
Sbjct: 354 LSKESGFPMEVPTCNAVIGAYCRALEFHHAFKMVDEMRKSGIGPNTRTYDIILNHLIKSE 413
Query: 458 KKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAI 517
K +EA ME G + + ++ C +D A +++M EK G +
Sbjct: 414 KIEEAYNLFQRMERDGCEPELNTYTMMVGMFCSNERVDMALKVWKQMKEK-GVLPCMHMF 472
Query: 518 DLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRG 565
L+N C NR +AC + + + ++P + L K LV+ G
Sbjct: 473 SALINGLCFDNRLEEACVYFQEML-DKGIRPPGQLFSNL-KEALVEGG 518
>gi|255660900|gb|ACU25619.1| pentatricopeptide repeat-containing protein [Glandularia incisa]
Length = 481
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 77/364 (21%), Positives = 146/364 (40%), Gaps = 48/364 (13%)
Query: 258 LRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCI 317
+R+L +F ++LV V+ + AL FFRW E S +H+ ++ + +LGR +
Sbjct: 3 IRNLVPSFDHELVYNVLHS-SKTSEHALQFFRWVERSNLFEHNRETHLKIIEILGRASKL 61
Query: 318 DRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFL 377
+ +L +M KG E + + V ++ + + +V+E+V
Sbjct: 62 NHARCILLDMPKKGLEWDEDMWVMMIDSYGKZGIVQESV--------------------- 100
Query: 378 LRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEG 437
++F K+ E G T N++ K ++ GR + M
Sbjct: 101 ------------KMFQKM----EELGVERTIKSYNALFKVILRRGRYMMAKRYFNKMLSE 144
Query: 438 GFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKA 497
G + + + + + +GK + AN F + M++ + + I G+ +++A
Sbjct: 145 GIEPTRHTFNVMIWGFFLSGKVETANRFFEDMKSREISPDVVTYNTXINGYYRVKKMEEA 204
Query: 498 ADCFQKMVEKEGTSHAGYAI--DLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEE 555
F VE +G + + L+ Y S ++ A + V ++ + +KP TY
Sbjct: 205 EKYF---VEMKGRNIEPTVVTYTTLIKGYVSVDQVDXALRLVEE-MKGFGIKPNAITYST 260
Query: 556 LIKNLLVQRGFKDALSLLCLMKDHGFPPFVDP-FIKYVSK---SGTSDDAIAFLKGMTSK 611
L+ L +A +L M D P + F++ +S SG D A LK M
Sbjct: 261 LLPGLCNAEKMSEARVILKEMMDKYLAPTDNSIFMRLISSHCXSGNLDAAADVLKAMXRL 320
Query: 612 RFPS 615
P+
Sbjct: 321 SVPT 324
Score = 49.3 bits (116), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 104/497 (20%), Positives = 192/497 (38%), Gaps = 79/497 (15%)
Query: 128 FTHEMVLKVLKNLESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLV 187
F HE+V VL + ++S + A +FF WV + +T+ ++ I+G + ++
Sbjct: 10 FDHELVYNVLHSSKTS-EHALQFFRWVERSNLFEHNRETHLKIIEILGRASKLNHARCIL 68
Query: 188 DVMKKKGYGVASHVRNKMTEKFEKEGLESDLEKLKGIFATGSIDNSIEKVASRICKVVRS 247
M KKG + M + + KZG+ + K+ +E++
Sbjct: 69 LDMPKKGLEWDEDMWVMMIDSYGKZGIVQESVKMF---------QKMEELG--------- 110
Query: 248 DIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAM 307
VER ++ N F V+ + G F + E ++ ++N M
Sbjct: 111 ------VERTIKSYNALFK------VILRRGRYMMAKRYFNKMLSEG--IEPTRHTFNVM 156
Query: 308 A---SVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMA 364
+ G+ + +RF+ ++M+S+ ++ T + + ++EA + Y M
Sbjct: 157 IWGFFLSGKVETANRFF---EDMKSREISPDVVTYNTXINGYYRVKKMEEA-EKYFVEMK 212
Query: 365 CKN-KPSVNCCTFLLRKIVVSKQLDMRL-FSKVVRVFRENGNVLTDAMLNSVLKALISVG 422
+N +P+V T L++ V Q+D L + ++ F N +T +++L L +
Sbjct: 213 GRNIEPTVVTYTTLIKGYVSVDQVDXALRLVEEMKGFGIKPNAIT---YSTLLPGLCNAE 269
Query: 423 RMGECNKILKAMEEGGFIASSNMKSKIAFRLSSA----GKKDEANEFMDHMEASGSDVGD 478
+M E ILK M + + N I RL S+ G D A + + M
Sbjct: 270 KMSEARVILKEMMDKYLAPTDN---SIFMRLISSHCXSGNLDAAADVLKAMXRLSVPTEA 326
Query: 479 KMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVH 538
+ LI+ C G DKA K++EK+ + L + Y
Sbjct: 327 GHYGVLIENFCKXGQYDKAVKLLDKLIEKDIILRPQSTLHLEPSAY-------------- 372
Query: 539 NCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPFIKYVSKSGTS 598
N EY E + L++ G +D +L L++ H S+ G+
Sbjct: 373 NPXIEYLCNNGQAXKAETLVRQLMKLGVQDPTALNTLIRGH-------------SQEGSP 419
Query: 599 DDAIAFLKGMTSKRFPS 615
D A LK M ++ S
Sbjct: 420 DSAFELLKIMLRRKVDS 436
>gi|225446845|ref|XP_002279656.1| PREDICTED: pentatricopeptide repeat-containing protein At1g79490,
mitochondrial-like [Vitis vinifera]
Length = 844
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 95/468 (20%), Positives = 185/468 (39%), Gaps = 61/468 (13%)
Query: 239 SRICKVVRSDIWGDDVERQLRDL----NVTFSNDLVKFVVDKLGDEPKKALIFFRWAE-E 293
++I ++V WG ++E QL L N++ +K V D +L FRWA+ +
Sbjct: 148 AKIVEIVNRWRWGPELETQLDKLHFVPNMSHVIQALKIVTDT-----DASLSLFRWAKRQ 202
Query: 294 SGFVKHDESSYNAMASVLGREDCIDRFWKVLDEM-------------------------- 327
+ ++ Y + L + D + DEM
Sbjct: 203 PWYSMLNDECYALLFDRLNQSRDFDAIQSLFDEMIRDSGDNNGVSSVIACNQVVRDLAKA 262
Query: 328 -------------RSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCC 374
+ G +++ T ++ F + + +A ++YE A +
Sbjct: 263 EKLEVAFCCFKKVQDSGCKIDTATYNSLITLFLNKGLPYKAFEVYESMEAAGCLLDGSTY 322
Query: 375 TFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAM 434
++ + S +LD K+ + +E + + S++ ++ GR+ K+ M
Sbjct: 323 ELMIPSLAKSGRLDAAF--KLFQEMKEKNLRPSFLVFASLVDSMGKAGRLDTSMKVYMEM 380
Query: 435 EEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDL 494
+ G S+ M + AGK + A D M+ +G ++ +++ H +G L
Sbjct: 381 QGFGLRPSATMYVSLIESFVKAGKLETALRIWDEMKKAGFRPNYGLYTMVVESHAKSGKL 440
Query: 495 DKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYE 554
+ A F M EK G L+ + + + +D+ ++N + L+P +TY
Sbjct: 441 ETAMSVFSDM-EKAGFLPTPSTYSCLLEMHSASGQ-VDSAMKLYNSMTNAGLRPGLSTYT 498
Query: 555 ELIKNLLVQRGFKDALSLLCLMKDHGFPPFV---DPFIKYVSKSGTSDDAIAFLKGMTSK 611
L+ L ++ A +L MK GF V D + Y+ K G+ D A+ +L+ M S
Sbjct: 499 ALLTLLANKKLVDVAAKVLLEMKAMGFSVDVSASDVLMVYI-KDGSVDLALRWLRFMGSS 557
Query: 612 RFPSMSVVL-CLFAAFFQARRHSEAQDLLSKCPRYVRNHADVLNLLYS 658
+ + ++ LF + + + A+ LL YV + A V +LY+
Sbjct: 558 GIRTNNFIIRQLFESCMKNGLYESAKPLLET---YVNSAAKVDLILYT 602
>gi|125602942|gb|EAZ42267.1| hypothetical protein OsJ_26834 [Oryza sativa Japonica Group]
Length = 1088
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 69/334 (20%), Positives = 134/334 (40%), Gaps = 8/334 (2%)
Query: 316 CIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCT 375
C + W++ +M++KG E + T ++ ++K A+ L+ P+
Sbjct: 505 CYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGLLKVAIGLFHRMSRDGVFPNTVTYN 564
Query: 376 FLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAME 435
L+ +V ++++ V+ + NG N ++K +G + ++ M
Sbjct: 565 ALINILVENRRIKYAFV--VLNLMGRNGLFTNIVTYNEMIKGYCILGDPKKAMLVMNNML 622
Query: 436 EGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLD 495
+ G A+ + I +G A +D M G + + LI G C ++
Sbjct: 623 QRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGFCKISKME 682
Query: 496 KAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEE 555
A F +MV+ +G L++ YC K+ +D + ++ +P TY
Sbjct: 683 SAFGLFNEMVD-DGLCPNEVTYTALIDGYC-KDEKLDTATSLLEHMKRSGCRPNVQTYNV 740
Query: 556 LIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPF---IKYVSKSGTSDDAIAFLKGMTSKR 612
LI L Q F A L +M + G P V + I + K+G++ A+ M +
Sbjct: 741 LIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALEMFNKMIEQG 800
Query: 613 -FPSMSVVLCLFAAFFQARRHSEAQDLLSKCPRY 645
P++ L A Q + EA++L ++ R+
Sbjct: 801 CLPNLLTYSSLIRALGQEGKVEEAENLFAELERH 834
Score = 42.7 bits (99), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 50/223 (22%), Positives = 91/223 (40%), Gaps = 9/223 (4%)
Query: 389 MRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSK 448
+++F+++ + E V ++N L GR+ E +++ M G + +++ +
Sbjct: 440 LQVFNQMAKEGCEPNTVTYSTLIN----GLCDSGRVNEAFDLIREMILHGILPTAHTCTG 495
Query: 449 IAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKE 508
L G ++A M+ G + + +LI G CV+G L A F +M ++
Sbjct: 496 PIIALCDMGCYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGLLKVAIGLFHRM-SRD 554
Query: 509 GTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKD 568
G + L+N +NR I V N + L TY E+IK + K
Sbjct: 555 GVFPNTVTYNALINILV-ENRRIKYAFVVLNLMGRNGLFTNIVTYNEMIKGYCILGDPKK 613
Query: 569 ALSLLCLMKDHGFPPFV---DPFIKYVSKSGTSDDAIAFLKGM 608
A+ ++ M G + + IK SG + A+ L M
Sbjct: 614 AMLVMNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLM 656
>gi|357115347|ref|XP_003559450.1| PREDICTED: pentatricopeptide repeat-containing protein At4g31850,
chloroplastic-like [Brachypodium distachyon]
Length = 1102
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 114/525 (21%), Positives = 199/525 (37%), Gaps = 77/525 (14%)
Query: 133 VLKVLKNLESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLVDVMKK 192
V+ +L++ + P EA + F V ++ ++++ N ML ++ HG V++ + D+M++
Sbjct: 81 VVHMLRSAAADPAEALQLFKSVAQQPRIVHTTESCNYMLELMRAHGRVRDMAQVFDLMQR 140
Query: 193 KGYGVASHVRNKMTEKFEKEGLESDLE---------KLKGIFATGSIDNSI--------- 234
+ V ++V +T F G+E L K GI N +
Sbjct: 141 Q--IVKANVGTFLT-IFRSLGMEGGLRSAPVALPMMKEAGIVLNSYTYNGLIYFLVKSGY 197
Query: 235 EKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEES 294
++ A + KV+ +D V R L + F V+ VV R E+
Sbjct: 198 DREAMEVYKVMATDGIVPSV-RTYSVLMLAFGKRDVETVV-----------WLLREMEDH 245
Query: 295 GFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKE 354
G VK + SY VLG+ + +K+L +M +G + ++ T ++ + V +
Sbjct: 246 G-VKPNVYSYTICIRVLGQAGRFEEAYKILQKMEDEGCKPDVVTNTVLIQILCDAGRVSD 304
Query: 355 AVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSV 414
A D++ A KP LL K D R ++ + +G +V
Sbjct: 305 AKDVFWKMKASDQKPDRVTYITLLDK--CGDNGDSRSVIEIWNAMKADGYNDNVVAYTAV 362
Query: 415 LKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGS 474
+ AL VGR+ DEA++ D M+ G
Sbjct: 363 VDALCQVGRV-----------------------------------DEASDVFDQMKQKGI 387
Query: 475 DVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDAC 534
+ + SLI G A L+ A + F M G + GY L +N Y ++ A
Sbjct: 388 EPQQYSYNSLISGFLKADRLNHALELFNHM-NIHGPTPNGYTYVLFINYYGKSGESLKAI 446
Query: 535 KFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPP---FVDPFIKY 591
K + ++ + P ++ +L A + +K G P IK
Sbjct: 447 KR-YELMKSKGIVPDVVAGNAVLYSLAKSGRLGMAKRVFHELKSIGVCPDNITYTMMIKC 505
Query: 592 VSKSGTSDDAIAFLKGMTSKR-FPSMSVVLCLFAAFFQARRHSEA 635
SK+ +D+A+ M R P + V L ++A R +EA
Sbjct: 506 CSKASNADEAMKVFSEMIETRCVPDVLAVNSLIDTLYKAGRGNEA 550
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 100/491 (20%), Positives = 189/491 (38%), Gaps = 80/491 (16%)
Query: 153 WVL---EKESERLSSKTYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRNKMTEKF 209
W+L E + + +Y + +R++G G +E + K+ +K
Sbjct: 237 WLLREMEDHGVKPNVYSYTICIRVLGQAGRFEEAY-------------------KILQKM 277
Query: 210 EKEGLESDLEKLKGIFATGSIDNSIEKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDL 269
E EG + D+ T ++ I A R+ + W Q D VT+
Sbjct: 278 EDEGCKPDV-------VTNTVLIQILCDAGRVSDA-KDVFWKMKASDQKPD-RVTYIT-- 326
Query: 270 VKFVVDKLGDEPKKALIFFRW-AEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMR 328
++DK GD + W A ++ + +Y A+ L + +D V D+M+
Sbjct: 327 ---LLDKCGDNGDSRSVIEIWNAMKADGYNDNVVAYTAVVDALCQVGRVDEASDVFDQMK 383
Query: 329 SKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLD 388
KG E + + ++ F + + + A++L+ + P+ N T++L K +
Sbjct: 384 QKGIEPQQYSYNSLISGFLKADRLNHALELFNHMNI--HGPTPNGYTYVLFINYYGKSGE 441
Query: 389 MRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSK 448
K + + G V N+VL +L GR+G ++ ++ G + N+
Sbjct: 442 SLKAIKRYELMKSKGIVPDVVAGNAVLYSLAKSGRLGMAKRVFHELKSIG-VCPDNITYT 500
Query: 449 IAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKE 508
+ + S +AS +D K++ +I+ CV L
Sbjct: 501 MMIKCCS--------------KASNADEAMKVFSEMIETRCVPDVL-------------- 532
Query: 509 GTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKD 568
A++ L++T R +A K H ++E +L P TY L+ L + K+
Sbjct: 533 -------AVNSLIDTLYKAGRGNEAWKIFHE-LKEMNLDPTDCTYNTLLAGLGREGKVKE 584
Query: 569 ALSLLCLMKDHGFPPFV---DPFIKYVSKSGTSDDAIAFLKGMTSKR-FPSMSVVLCLFA 624
+ LL M + +PP + + + + K+G + A+ L MT K P +S
Sbjct: 585 VMHLLEEMNSNSYPPNLITYNTVLDCLCKNGEVNYALGMLYNMTMKGCMPDLSSYNTALH 644
Query: 625 AFFQARRHSEA 635
+ R +EA
Sbjct: 645 GLVKEDRLTEA 655
Score = 54.7 bits (130), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 68/288 (23%), Positives = 121/288 (42%), Gaps = 12/288 (4%)
Query: 300 DESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLY 359
DE +YN + +G+ I+ KV EM KGYE T ++ + M+ EA+DLY
Sbjct: 810 DEFTYNLILDAMGKSMRIEDMLKVQKEMHCKGYESTYVTYNTIISGLVKSKMLYEAMDLY 869
Query: 360 EFAMACKNKPSVNCCTF--LLRKIVVSKQLD--MRLFSKVVRVFRENGNVLTDAMLNSVL 415
M+ P+ CT+ LL ++ +++ LF +++ + G A+ N +L
Sbjct: 870 YKLMSEGFSPTP--CTYGPLLDGLLKDGKIEDAEDLFDEML----DYGCKPNRAIYNILL 923
Query: 416 KALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSD 475
G + ++ + M + G + + L +AG+ +++ + + G +
Sbjct: 924 NGYRLAGNTEKVCELFQNMVDQGINPDIKSYTVLIGALCTAGRLNDSLSYFRQLTELGLE 983
Query: 476 VGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACK 535
+ LI G +G L++A F M EK G + Y + L+ + +A +A K
Sbjct: 984 PDLITYNLLIHGLGRSGRLEEAVSLFNDM-EKSGIAPNLYTYNSLILYLGKEGKAAEAGK 1042
Query: 536 FVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPP 583
++ KP TY LI V +A + M G PP
Sbjct: 1043 MYEELLKN-GWKPNVFTYNALIGGYSVSGSTDNAFASYGQMIVGGCPP 1089
Score = 41.2 bits (95), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 74/344 (21%), Positives = 129/344 (37%), Gaps = 52/344 (15%)
Query: 301 ESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVD-LY 359
+ +YN + + LGRE + +L+EM S Y + T VL + V A+ LY
Sbjct: 566 DCTYNTLLAGLGREGKVKEVMHLLEEMNSNSYPPNLITYNTVLDCLCKNGEVNYALGMLY 625
Query: 360 EFAM-ACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTD--AMLNSVLK 416
M C P ++ L +V +L ++ R+F + VL L ++L
Sbjct: 626 NMTMKGC--MPDLSSYNTALHGLVKEDRL-----TEAFRIFCQMKKVLAPDYTTLCTILP 678
Query: 417 ALISVGRMGECNKILKA--MEEG-------------GFIASSNMKSKIAF---------- 451
+ + G M E LK ++ G G + + M+ I F
Sbjct: 679 SFVKNGLMNEALHTLKEYILQPGSKADRSSFHSLMEGILKRAGMEKSIEFAENIALSRIL 738
Query: 452 -----------RLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADC 500
L + K EA+E + E+ G + + +LI G +D A
Sbjct: 739 LDDFFLSPLIRHLCKSKKALEAHELVKKFESLGVSLKTGSYNALICGLVDENLIDVAEGL 798
Query: 501 FQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNL 560
F +M ++ G + +L+++ R D K V + + + TY +I L
Sbjct: 799 FSEM-KRLGCDPDEFTYNLILDAMGKSMRIEDMLK-VQKEMHCKGYESTYVTYNTIISGL 856
Query: 561 LVQRGFKDALSLLCLMKDHGFPP---FVDPFIKYVSKSGTSDDA 601
+ + +A+ L + GF P P + + K G +DA
Sbjct: 857 VKSKMLYEAMDLYYKLMSEGFSPTPCTYGPLLDGLLKDGKIEDA 900
>gi|302780401|ref|XP_002971975.1| hypothetical protein SELMODRAFT_96626 [Selaginella moellendorffii]
gi|300160274|gb|EFJ26892.1| hypothetical protein SELMODRAFT_96626 [Selaginella moellendorffii]
Length = 755
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 82/361 (22%), Positives = 143/361 (39%), Gaps = 13/361 (3%)
Query: 287 FFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRF 346
FR E+G + + +YN + S L R +D +++LDEMR +G + + + ++
Sbjct: 218 LFRQMVENGCMP-NLVTYNTLLSGLCRNGLMDEAYELLDEMRERGLQPDKFSYDTLMAGL 276
Query: 347 SERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLD--MRLFSKVVRVFRENGN 404
+ + A+ ++E P V + L+ + + +LD +LF K+ REN
Sbjct: 277 CKTGKIDMALKVFEDNSNGDCPPDVVAYSTLIAGLCKAGRLDEACKLFEKM----RENSC 332
Query: 405 VLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANE 464
+++ L R+ E ++L+ ME+ + S + L G+ +A E
Sbjct: 333 EPDVVTFTALMDGLCKGDRLQEAQQVLETMEDRNCTPNVITYSSLIDGLCKTGQVRDAQE 392
Query: 465 FMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTY 524
M G + + SLI G C+ +D A ++M G + L++
Sbjct: 393 VFKRMIVRGIEPNVVTYNSLIHGFCMTNGVDSALLLMEEMTAT-GCLPDIITYNTLIDGL 451
Query: 525 CSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPF 584
C RA +A + + ++ P TY LI A +L M P
Sbjct: 452 CKTGRAPEANRLFGDMKAKF-CNPDVITYSCLIGGFCKLERIDMARTLFDDMLKQAVLPD 510
Query: 585 VDPFIKYVS---KSGTSDDAIAFLKGM-TSKRFPSMSVVLCLFAAFFQARRHSEAQDLLS 640
V F V +G DDA L+ M S P + L F + R EA+ +L
Sbjct: 511 VVTFSTLVEGYCNAGLVDDAERLLEEMVASDCSPDVYTYTSLVDGFCKVGRMVEARRVLK 570
Query: 641 K 641
+
Sbjct: 571 R 571
Score = 54.7 bits (130), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/162 (23%), Positives = 69/162 (42%), Gaps = 1/162 (0%)
Query: 412 NSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEA 471
S++ VGRM E ++LK M + G + + + AGK A ++ M
Sbjct: 550 TSLVDGFCKVGRMVEARRVLKRMAKRGCQPNVVTYTALIDAFCRAGKPTVAYRLLEEMVG 609
Query: 472 SGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAI 531
+G + SLI G C GDL++A +++ E +A ++++ C R
Sbjct: 610 NGVQPNVITYRSLIGGFCGTGDLEEARKILERLERDENCKADMFAYRVMMDGLCRTGRMS 669
Query: 532 DACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLL 573
A + + +++ P H Y LI+ L + A+ +L
Sbjct: 670 AALELLEA-IKQSGTPPRHDIYVALIRGLCQGKELGKAMEVL 710
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 78/367 (21%), Positives = 138/367 (37%), Gaps = 17/367 (4%)
Query: 280 EPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETC 339
+P AL FF WA + H+ +YN + L R ID +L G + T
Sbjct: 3 DPDAALRFFHWASKQQGFDHNVYTYNRLFEALLRARRIDETCHILKNGWPPGITPNVFTY 62
Query: 340 VKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVF 399
V+ + + +A +L E P F++ + ++ +K + F
Sbjct: 63 AVVIQGLCKSGDLDKACELLEEMRESGPVPDAAIYNFVIHALCKARNT-----AKALDYF 117
Query: 400 RE---NGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSA 456
R NV+T ++ + L R+ E M++ G + + + +
Sbjct: 118 RSMECEKNVITWTIM---IDGLCKANRLPEATTYFAKMKKKGTVPNEWTYNVLINGFCKV 174
Query: 457 GKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYA 516
K A + M+ SG + ++I G C +D A F++MVE G
Sbjct: 175 HKVHRAYLLLKEMKESGLAPNVVTYSTVIHGFCRQTKVDTAYKLFRQMVEN-GCMPNLVT 233
Query: 517 IDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLM 576
+ L++ C +N +D + + +RE L+P +Y+ L+ L AL +
Sbjct: 234 YNTLLSGLC-RNGLMDEAYELLDEMRERGLQPDKFSYDTLMAGLCKTGKIDMALKVFEDN 292
Query: 577 KDHGFPPFVDPF---IKYVSKSGTSDDAIAFLKGMTSKRF-PSMSVVLCLFAAFFQARRH 632
+ PP V + I + K+G D+A + M P + L + R
Sbjct: 293 SNGDCPPDVVAYSTLIAGLCKAGRLDEACKLFEKMRENSCEPDVVTFTALMDGLCKGDRL 352
Query: 633 SEAQDLL 639
EAQ +L
Sbjct: 353 QEAQQVL 359
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 94/440 (21%), Positives = 173/440 (39%), Gaps = 47/440 (10%)
Query: 166 TYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRNKMTEKFEKEGLESDLEKLKGIF 225
TYN +L + +GL+ E + L+D M+++G +KF + L + G+
Sbjct: 233 TYNTLLSGLCRNGLMDEAYELLDEMRERGL---------QPDKFSYDTL------MAGLC 277
Query: 226 ATGSIDNSIEKVASRICKVVRSDIWGD---DVERQLRDLNVTFSNDLVKFVVDKLGDEPK 282
TG ID ++ KV + GD DV V +S + DE
Sbjct: 278 KTGKIDMAL--------KVFEDNSNGDCPPDV--------VAYSTLIAGLCKAGRLDEAC 321
Query: 283 KALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKV 342
K +F + E S + D ++ A+ L + D + +VL+ M + + T +
Sbjct: 322 K--LFEKMRENS--CEPDVVTFTALMDGLCKGDRLQEAQQVLETMEDRNCTPNVITYSSL 377
Query: 343 LGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFREN 402
+ + V++A ++++ + +P+V L+ ++ +D L ++
Sbjct: 378 IDGLCKTGQVRDAQEVFKRMIVRGIEPNVVTYNSLIHGFCMTNGVDSALL--LMEEMTAT 435
Query: 403 GNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEA 462
G + N+++ L GR E N++ M+ S + + D A
Sbjct: 436 GCLPDIITYNTLIDGLCKTGRAPEANRLFGDMKAKFCNPDVITYSCLIGGFCKLERIDMA 495
Query: 463 NEFMDHM--EASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLL 520
D M +A DV + +L++G+C AG +D A ++MV + + Y L
Sbjct: 496 RTLFDDMLKQAVLPDV--VTFSTLVEGYCNAGLVDDAERLLEEMVASDCSPDV-YTYTSL 552
Query: 521 VNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHG 580
V+ +C R ++A + + + +P TY LI A LL M +G
Sbjct: 553 VDGFCKVGRMVEARRVLKRMAKR-GCQPNVVTYTALIDAFCRAGKPTVAYRLLEEMVGNG 611
Query: 581 FPPFVDPFIKYVSK-SGTSD 599
P V + + GT D
Sbjct: 612 VQPNVITYRSLIGGFCGTGD 631
Score = 48.5 bits (114), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 49/217 (22%), Positives = 85/217 (39%), Gaps = 5/217 (2%)
Query: 395 VVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLS 454
+++ +E+G ++V+ ++ K+ + M E G + + + + L
Sbjct: 183 LLKEMKESGLAPNVVTYSTVIHGFCRQTKVDTAYKLFRQMVENGCMPNLVTYNTLLSGLC 242
Query: 455 SAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAG 514
G DEA E +D M G + +L+ G C G +D A F+ +
Sbjct: 243 RNGLMDEAYELLDEMRERGLQPDKFSYDTLMAGLCKTGKIDMALKVFEDNSNGDCPPDV- 301
Query: 515 YAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLC 574
A L+ C R +ACK +RE +P T+ L+ L ++A +L
Sbjct: 302 VAYSTLIAGLCKAGRLDEACKLFEK-MRENSCEPDVVTFTALMDGLCKGDRLQEAQQVLE 360
Query: 575 LMKDHGFPPFVDPF---IKYVSKSGTSDDAIAFLKGM 608
M+D P V + I + K+G DA K M
Sbjct: 361 TMEDRNCTPNVITYSSLIDGLCKTGQVRDAQEVFKRM 397
>gi|224130936|ref|XP_002320961.1| predicted protein [Populus trichocarpa]
gi|222861734|gb|EEE99276.1| predicted protein [Populus trichocarpa]
Length = 474
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 62/257 (24%), Positives = 110/257 (42%), Gaps = 10/257 (3%)
Query: 389 MRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSK 448
+ + SK++++ E V +LN L G+M + + M G + +
Sbjct: 117 LSVLSKILKLGLEPSIVTFTTLLN----GLCMEGKMDQVMMLYDDMLVRGLQPNVYTYNV 172
Query: 449 IAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKE 508
I LS +GK +EA F+ ME G + +LI G+C+ G +D+A F MV K
Sbjct: 173 IINSLSKSGKANEALGFLKQMEKVGCVPNVVNYSTLIDGYCLRGQMDEARSVFDLMVSKG 232
Query: 509 GTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKD 568
T + Y L+N YC R +A + + +R+ L P T+ +I L
Sbjct: 233 CTPNV-YTYTSLMNGYCKIERIEEAVQLLDETLRK-GLVPDIVTFTTIISGLCRAGRPLA 290
Query: 569 ALSLLCLMKDHGFPPFVDPF---IKYVSKSGTSDDAIAFLKGMT-SKRFPSMSVVLCLFA 624
A L + HG P + + + + K G ++A A + M S P++ + L
Sbjct: 291 AQQLFRYICAHGHTPNIMTYGVLLDGLCKHGNLEEAFALFQEMQRSTVKPNLVIYTILID 350
Query: 625 AFFQARRHSEAQDLLSK 641
+ + + + ++L S+
Sbjct: 351 SLCKCGKIKDGKELFSR 367
>gi|357138018|ref|XP_003570595.1| PREDICTED: pentatricopeptide repeat-containing protein At1g73400,
mitochondrial-like [Brachypodium distachyon]
Length = 548
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 93/421 (22%), Positives = 166/421 (39%), Gaps = 57/421 (13%)
Query: 235 EKVAS---RICKVVRSDIWG--DDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFR 289
E+VAS RI V G D E L L + LV V+ +L E K A FF
Sbjct: 68 ERVASLSDRIYDAVTGTEEGSNDGTEAALDALGAELTTPLVSDVMHRLRYEEKLAFRFFA 127
Query: 290 WAEESGFVKHDESSYNAMASVLGREDCIDR----FWKVLDEM-RSKGYEMEMETCVKVLG 344
WA + +HD+++YN + L R VLD M R + + +E + +L
Sbjct: 128 WASQQDNYEHDQAAYNEVIDTLSGTRYKARQFGVLCDVLDHMKRHRTRSVPVEDLLAILR 187
Query: 345 RFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGN 404
++E+++ LRK+ +++ MR +
Sbjct: 188 AYTEKHLTN------------------------LRKLAKKRRVRMRTPPE---------- 213
Query: 405 VLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANE 464
TDA LN +L A G + E + ++ ++ + + F A +A +
Sbjct: 214 --TDA-LNILLDAFCKCGMVREAETVFGRVKR-KLQGNAETYNILFFGWCRARDPKKAMK 269
Query: 465 FMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEG---TSHAGYAIDLLV 521
++ M +++ I C AG + +A + F+ M EG +S A +++
Sbjct: 270 VLEEMILMKHAPESFTYIAAIDSFCSAGLVSEAKELFEFM-RTEGSSISSPTAKAYSVMI 328
Query: 522 NTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGF 581
+R D + + + ++ P +T+++LI+ + + A +L M GF
Sbjct: 329 VALVKADRMDDCFELISDMIK-LGCMPDVSTFKDLIEGMCLVDKIDTAYFVLEEMGKAGF 387
Query: 582 PPFV---DPFIKYVSKSGTSDDAIAFLKGMTSKRF-PSMSVVLCLFAAFFQARRHSEAQD 637
PP + + F++ + +DDA+ + M PS+ L FFQ R A D
Sbjct: 388 PPDIVTYNCFLEVLCNLQKADDALKLCERMIEAHCEPSVHTYNMLMVMFFQMREPHRALD 447
Query: 638 L 638
+
Sbjct: 448 I 448
>gi|326489757|dbj|BAK01859.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 746
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 59/284 (20%), Positives = 120/284 (42%), Gaps = 5/284 (1%)
Query: 287 FFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRF 346
F ++ G D ++ A+ + L R + +VL EM KG ++++ T ++ +
Sbjct: 379 LFEEMQKRGLAA-DRVTHTALINGLCRAGELKEADRVLQEMVDKGLDVDVVTYTVLIDGY 437
Query: 347 SERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVL 406
+R + EA ++ + + P N T+ + KQ D+R ++++ G L
Sbjct: 438 CKRGNMVEAFRVHNEMVGRRVAP--NVVTYTALSDGLCKQGDVRAANELLHEMCNKGLEL 495
Query: 407 TDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFM 466
NS++ L G + + +I+ ME G + + L +G+ D A+ +
Sbjct: 496 NVYTYNSLINGLCKFGNLEQAMRIMTEMEAAGHRTDVYTYTTLIDTLCKSGEFDRAHNML 555
Query: 467 DHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCS 526
M G + L+ G C++G ++ + M+EK + + L+ YC
Sbjct: 556 QEMLDKGIKPSIATYNVLMNGFCMSGRVEGGKKLLEWMLEKNVRPNV-VTYNSLMKQYCI 614
Query: 527 KNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDAL 570
++ + + ++ + ++ P TY LIK R K+AL
Sbjct: 615 -DKNMKSTTEIYKGMHSQEVAPNENTYNILIKGHCKARNMKEAL 657
Score = 53.9 bits (128), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 88/406 (21%), Positives = 148/406 (36%), Gaps = 54/406 (13%)
Query: 242 CKVVRSDIWGDD---VERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVK 298
C V S + D+ + R+L D NV N L+K ++ K A F
Sbjct: 231 CNAVLSRLPLDEAIALFRELPDKNVCSHNILLKALLS--AGRLKDACQHFDEMSSPP--- 285
Query: 299 HDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDL 358
D +Y M ++ K+LDEM +KG E V+ + V +A+ +
Sbjct: 286 -DVVTYGTMVHGYCVRGELENAVKLLDEMAAKGLESNATVYTSVIALLCNKGQVSDALRV 344
Query: 359 YEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKAL 418
E DM + +G L + +V+
Sbjct: 345 LE---------------------------DMTM----------HGVALDAVVFTTVISGF 367
Query: 419 ISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGD 478
S G + ++ + M++ G A + + L AG+ EA+ + M G DV
Sbjct: 368 CSKGDLAAARRLFEEMQKRGLAADRVTHTALINGLCRAGELKEADRVLQEMVDKGLDVDV 427
Query: 479 KMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVH 538
+ LI G+C G++ +A +MV + + L + C + A + +H
Sbjct: 428 VTYTVLIDGYCKRGNMVEAFRVHNEMVGRRVAPNV-VTYTALSDGLCKQGDVRAANELLH 486
Query: 539 N-CVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPF---IKYVSK 594
C + +L + TY LI L + A+ ++ M+ G V + I + K
Sbjct: 487 EMCNKGLELNVY--TYNSLINGLCKFGNLEQAMRIMTEMEAAGHRTDVYTYTTLIDTLCK 544
Query: 595 SGTSDDAIAFLKGMTSKRF-PSMSVVLCLFAAFFQARRHSEAQDLL 639
SG D A L+ M K PS++ L F + R + LL
Sbjct: 545 SGEFDRAHNMLQEMLDKGIKPSIATYNVLMNGFCMSGRVEGGKKLL 590
>gi|357130032|ref|XP_003566662.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
distachyon]
Length = 859
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 99/456 (21%), Positives = 173/456 (37%), Gaps = 50/456 (10%)
Query: 228 GSIDNSIE--KVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLG----DEP 281
G + N+I V +C RS D V+R ++ S D+V F G E
Sbjct: 222 GCVPNAISYNTVIKSLCGDSRSQEALDMVQRMAKE-GGRCSPDVVSFNTVIHGFFKQGEV 280
Query: 282 KKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVK 341
KA + G V+ D +YN++ L + +D+ VL +M KG E + T
Sbjct: 281 SKACNLINEMVQKG-VEPDVVTYNSIVDALCKARAMDKAELVLRQMVDKGVEPDGLTYTA 339
Query: 342 VLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRE 401
++ +S KE+ ++ + P + TF + K + ++ +
Sbjct: 340 IIHGYSCSGHWKESAKMFRKMTSKGLIPGI--VTFNSFMSSLCKHGRSKDAEEIFQYMTT 397
Query: 402 NGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDE 461
G++ + +L + GR + N + +M + G +A+ + + + + G DE
Sbjct: 398 KGHMPDLVSYSILLHGYATEGRFADMNNLFHSMADKGIVANCHCFNILISAHAKRGMMDE 457
Query: 462 ANEFMDHMEASG---------------------SDVGDK--------------MWVSLIK 486
A M+ G +D +K ++ SLI
Sbjct: 458 AMLVFTEMQGQGVRPDVVTYSTLISAFCRMGRLADAMEKFSQMISIGLEPNTVVYHSLIH 517
Query: 487 GHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDL 546
G C+ GDL KA + +M+ K ++++ C++ R +DA V N V
Sbjct: 518 GFCMHGDLVKAKELVSEMMSKGIPRPNIVFFSSIIHSLCNEGRVMDA-HDVFNLVIHIGD 576
Query: 547 KPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPFIKYVS---KSGTSDDAIA 603
+P T+ LI + + A +L M G P V + VS KSG DD +
Sbjct: 577 RPTIVTFNSLIDGYCLVGKMEKAFGVLDAMVSVGIEPDVVTYNTLVSGYCKSGKIDDGLI 636
Query: 604 FLKGMTSKRF-PSMSVVLCLFAAFFQARRHSEAQDL 638
+ M K+ P+ + F A R S A+ +
Sbjct: 637 LFREMLHKKVKPTTVTYSIVLDGLFHAGRTSAAKKM 672
Score = 41.6 bits (96), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 56/128 (43%), Gaps = 1/128 (0%)
Query: 410 MLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHM 469
+LN+V+ AL V R E N + A+ G + + + + L G +EA+ M
Sbjct: 722 ILNTVINALYKVRRREEANDLFAAISTSGLVPNVSTYGVMIHNLLKEGSVEEADTMFSSM 781
Query: 470 EASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNR 529
E SG ++ +I+ GD+ KA K V+ S LL++ + SK +
Sbjct: 782 EKSGCAPSSRLLNDIIRMLLQKGDIVKAGYYMSK-VDGTIISLEASTTSLLMSLFSSKGK 840
Query: 530 AIDACKFV 537
+ KF+
Sbjct: 841 HREQIKFL 848
>gi|242067341|ref|XP_002448947.1| hypothetical protein SORBIDRAFT_05g002250 [Sorghum bicolor]
gi|241934790|gb|EES07935.1| hypothetical protein SORBIDRAFT_05g002250 [Sorghum bicolor]
Length = 797
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 55/240 (22%), Positives = 99/240 (41%), Gaps = 6/240 (2%)
Query: 410 MLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHM 469
+ NS++ L +V + + + M G + I L + G+ +A +D M
Sbjct: 450 VFNSLVYGLCTVDKWEKAKEFYFEMLNQGIRPDVVFFNTILCNLCTKGQVMKAQRLIDLM 509
Query: 470 EASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNR 529
E G+ + +LI GHC+ G +D+AA M+ G + + L++ YC R
Sbjct: 510 ERVGTRPDVISYTTLIGGHCLVGRIDEAAKSLDVMLSV-GLKPDEWTYNTLLHGYCRAGR 568
Query: 530 AIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFV---D 586
DA +R + P TY ++ L R F +A L M G + +
Sbjct: 569 IDDAYGVFREMLRN-GITPGVVTYSTILHGLFTTRRFSEAKELYLNMITSGKQWNIWIYN 627
Query: 587 PFIKYVSKSGTSDDAIAFLKGMTSKRFP-SMSVVLCLFAAFFQARRHSEAQDLLSKCPRY 645
+ +SK+ D+A + + SK F ++ + A F++ R+ +A L + Y
Sbjct: 628 IILNGLSKNNCVDEAFKLFQSLCSKDFQLEITTFNIMIGALFKSGRNEDAMHLFATISSY 687
Score = 46.2 bits (108), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 45/188 (23%), Positives = 73/188 (38%), Gaps = 2/188 (1%)
Query: 412 NSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEA 471
N ++ +S+G+ E ++L+ M G + L + G+ EA F D M
Sbjct: 277 NCLIHGYLSIGKWKEVVRMLEEMSAHGLKPDCYTYGSLLNYLCNNGRCREARFFFDSMIR 336
Query: 472 SGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAI 531
G ++ LI G+ G L + D MVE G S + +++ Y +K I
Sbjct: 337 KGIKPNVAIYGILIHGYATKGALSEMHDLLNLMVEN-GLSPDHHIFNIIFTAY-AKKAMI 394
Query: 532 DACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPFIKY 591
D + N +++ L P + LI L DA+ M + G P + F
Sbjct: 395 DEAMHIFNKMKQQGLSPDVVNFGALIDALCKLGRVDDAVLKFNQMMNEGVAPNIFVFNSL 454
Query: 592 VSKSGTSD 599
V T D
Sbjct: 455 VYGLCTVD 462
Score = 45.1 bits (105), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 67/346 (19%), Positives = 126/346 (36%), Gaps = 8/346 (2%)
Query: 297 VKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAV 356
VK D +YN + ++L+EM + G + + T +L +EA
Sbjct: 269 VKPDNDTYNCLIHGYLSIGKWKEVVRMLEEMSAHGLKPDCYTYGSLLNYLCNNGRCREAR 328
Query: 357 DLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLK 416
++ + KP+V L+ L ++ + ENG + N +
Sbjct: 329 FFFDSMIRKGIKPNVAIYGILIHGYATKGALSE--MHDLLNLMVENGLSPDHHIFNIIFT 386
Query: 417 ALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDV 476
A + E I M++ G + L G+ D+A + M G
Sbjct: 387 AYAKKAMIDEAMHIFNKMKQQGLSPDVVNFGALIDALCKLGRVDDAVLKFNQMMNEGVAP 446
Query: 477 GDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKF 536
++ SL+ G C +KA + + +M+ + + +L N C+K + + A +
Sbjct: 447 NIFVFNSLVYGLCTVDKWEKAKEFYFEMLNQGIRPDVVFFNTILCN-LCTKGQVMKAQRL 505
Query: 537 VHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPP---FVDPFIKYVS 593
+ + + +P +Y LI + +A L +M G P + +
Sbjct: 506 I-DLMERVGTRPDVISYTTLIGGHCLVGRIDEAAKSLDVMLSVGLKPDEWTYNTLLHGYC 564
Query: 594 KSGTSDDAIAFLKGMTSKRF-PSMSVVLCLFAAFFQARRHSEAQDL 638
++G DDA + M P + + F RR SEA++L
Sbjct: 565 RAGRIDDAYGVFREMLRNGITPGVVTYSTILHGLFTTRRFSEAKEL 610
Score = 40.0 bits (92), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 51/228 (22%), Positives = 84/228 (36%), Gaps = 36/228 (15%)
Query: 297 VKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVL-GRFSERNMVKEA 355
+K DE +YN + R ID + V EM G + T +L G F+ R EA
Sbjct: 549 LKPDEWTYNTLLHGYCRAGRIDDAYGVFREMLRNGITPGVVTYSTILHGLFTTRRF-SEA 607
Query: 356 VDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNV---------- 405
+LY L I KQ ++ +++ ++ +N V
Sbjct: 608 KELY------------------LNMITSGKQWNIWIYNIILNGLSKNNCVDEAFKLFQSL 649
Query: 406 ------LTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKK 459
L N ++ AL GR + + + G + IA L G
Sbjct: 650 CSKDFQLEITTFNIMIGALFKSGRNEDAMHLFATISSYGLVPDVFTYCLIAENLIEEGYL 709
Query: 460 DEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEK 507
+E ++ ME SG+ +M +L++ GD+ +A K+ EK
Sbjct: 710 EEFDDLFSAMEKSGTTPNSRMLNALVRRLLHRGDITRAGAYLSKLDEK 757
>gi|449511869|ref|XP_004164076.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g48810-like [Cucumis sativus]
Length = 660
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 76/348 (21%), Positives = 139/348 (39%), Gaps = 15/348 (4%)
Query: 284 ALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVL 343
L FF S +H S+Y M LGRE +D +L +M+ G + + ++
Sbjct: 57 VLGFFSAIANSNAFQHTASTYRVMIERLGRECEMDMVQYILQQMKMDGINCCEDLFICII 116
Query: 344 GRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENG 403
+ ++A+ ++ KP+V LL ++ + M + + +++G
Sbjct: 117 NGYKRVGSAEQALKMFYRIGEFGCKPTVRIYNHLLDALLSENKFQM--INPLYTNMKKDG 174
Query: 404 NVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEAN 463
+ N +LKAL R+ +K+ M G + + + L AGK D+A
Sbjct: 175 LIPNVFTYNILLKALCKNDRVDAAHKLFVEMSNKGCPPDAVTYTTMVSSLCKAGKIDDAR 234
Query: 464 EFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNT 523
E + S ++ +LI G C G ++ A +M++ G + ++N+
Sbjct: 235 ELAGRFKPS-----VPVYNALIDGMCKEGRIEVAIKLLGEMMDN-GVDPNVVSYSCIINS 288
Query: 524 YC-SKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFP 582
C S N + F +R D T+ LIK ++ +AL L LM G
Sbjct: 289 LCVSGNVELAFALFAQMFLRGCDANI--HTFTPLIKGCFMRGKLYEALDLWKLMIQDGCE 346
Query: 583 PFV---DPFIKYVSKSGTSDDAIAFLKGMT-SKRFPSMSVVLCLFAAF 626
P V + I + +G+ ++A+ M S P+++ L F
Sbjct: 347 PNVVAYNTLIHGLCSNGSLEEALQVCDQMQRSGCLPNVTTYSILIDGF 394
Score = 48.9 bits (115), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 104/493 (21%), Positives = 195/493 (39%), Gaps = 42/493 (8%)
Query: 110 KFSDVNDISKQLELSGV---VFTHEMVLKVL-KNLESSPDEARRFFNWVLEKESERLSSK 165
KF +N + ++ G+ VFT+ ++LK L KN D A + F + K +
Sbjct: 159 KFQMINPLYTNMKKDGLIPNVFTYNILLKALCKN--DRVDAAHKLFVEMSNKGCPP-DAV 215
Query: 166 TYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRNKMTEKFEKEGLESDLEKLKGIF 225
TY M+ + G + + L K + V N + + KEG KL G
Sbjct: 216 TYTTMVSSLCKAGKIDDARELAGRFKP-----SVPVYNALIDGMCKEGRIEVAIKLLGEM 270
Query: 226 ATGSIDNSIEKVASRICKVVRSDIWGDDVERQ--------LR--DLNVTFSNDLVK--FV 273
+D V S C ++ S +VE LR D N+ L+K F+
Sbjct: 271 MDNGVD---PNVVSYSC-IINSLCVSGNVELAFALFAQMFLRGCDANIHTFTPLIKGCFM 326
Query: 274 VDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYE 333
KL +AL ++ + G + + +YN + L ++ +V D+M+ G
Sbjct: 327 RGKL----YEALDLWKLMIQDG-CEPNVVAYNTLIHGLCSNGSLEEALQVCDQMQRSGCL 381
Query: 334 MEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFS 393
+ T ++ F++ + A + + ++ +P+V T ++ + + D +
Sbjct: 382 PNVTTYSILIDGFAKSGDLVGASETWNRMISHGCRPNVVTYTCMVDVLCKNSMFDQA--N 439
Query: 394 KVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRL 453
+V G N+ +K L GR+ K+L+ M+ G + + +++ L
Sbjct: 440 SLVEKMTLEGCTPNTITFNTFIKGLCGNGRVEWAMKLLERMQGHGCLPNITTYNELLDAL 499
Query: 454 SSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHA 513
K +EA +EA + +++ G AG + +A F K + + GT+
Sbjct: 500 FRMNKYEEAFGLFQEIEARNLQPNLVTYNTVLYGFSRAGMMGEALQLFGKALVR-GTAPD 558
Query: 514 GYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWH---TTYEELIKNLLVQRGFKDAL 570
+ +++ YC + + A + V R +K WH TY LI ++A+
Sbjct: 559 SITYNTMIHAYCKQGKVKIAAQLVE---RVSSMKEWHPDIITYTSLIWGACNWMNIEEAM 615
Query: 571 SLLCLMKDHGFPP 583
+ L + G P
Sbjct: 616 AFLDKAINQGICP 628
Score = 45.4 bits (106), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 74/376 (19%), Positives = 143/376 (38%), Gaps = 44/376 (11%)
Query: 303 SYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFA 362
+YN + L + D +D K+ EM +KG + T ++ + + +A +L
Sbjct: 181 TYNILLKALCKNDRVDAAHKLFVEMSNKGCPPDAVTYTTMVSSLCKAGKIDDAREL---- 236
Query: 363 MACKNKPSVNCCTFLLRKIVVSKQLDMRL-----------------FSKVVRVFRENGNV 405
A + KPSV L+ + ++++ + +S ++ +GNV
Sbjct: 237 -AGRFKPSVPVYNALIDGMCKEGRIEVAIKLLGEMMDNGVDPNVVSYSCIINSLCVSGNV 295
Query: 406 L-------------TDAMLNS---VLKALISVGRMGECNKILKAMEEGGFIASSNMKSKI 449
DA +++ ++K G++ E + K M + G + + +
Sbjct: 296 ELAFALFAQMFLRGCDANIHTFTPLIKGCFMRGKLYEALDLWKLMIQDGCEPNVVAYNTL 355
Query: 450 AFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEG 509
L S G +EA + D M+ SG + LI G +GDL A++ + +M+ G
Sbjct: 356 IHGLCSNGSLEEALQVCDQMQRSGCLPNVTTYSILIDGFAKSGDLVGASETWNRMIS-HG 414
Query: 510 TSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDA 569
+V+ C + A V E P T+ IK L + A
Sbjct: 415 CRPNVVTYTCMVDVLCKNSMFDQANSLVEKMTLE-GCTPNTITFNTFIKGLCGNGRVEWA 473
Query: 570 LSLLCLMKDHGFPPFVDPF---IKYVSKSGTSDDAIAFLKGMTSKRF-PSMSVVLCLFAA 625
+ LL M+ HG P + + + + + ++A + + ++ P++ +
Sbjct: 474 MKLLERMQGHGCLPNITTYNELLDALFRMNKYEEAFGLFQEIEARNLQPNLVTYNTVLYG 533
Query: 626 FFQARRHSEAQDLLSK 641
F +A EA L K
Sbjct: 534 FSRAGMMGEALQLFGK 549
>gi|356573733|ref|XP_003555011.1| PREDICTED: pentatricopeptide repeat-containing protein At1g79490,
mitochondrial-like [Glycine max]
Length = 752
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 98/464 (21%), Positives = 186/464 (40%), Gaps = 56/464 (12%)
Query: 239 SRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVK 298
++I +VV+ WG +++ QL L + + + +GD L FRWA+ +
Sbjct: 61 AKIVEVVKRWKWGPELDTQLDKLQFVPNMTHIAQALKVVGDV-DACLSLFRWAKRQAWYV 119
Query: 299 HDESSYNAMASVLGREDCIDRFWKVLDEM------------------------------- 327
+ Y + L ++ + + DEM
Sbjct: 120 PSDDCYVMLFDGLNQKRDFEGIQLLFDEMVGDSADGVSLFAACNRVIRYLAKAEKLEVSF 179
Query: 328 ------RSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKI 381
+ G +++ ET ++ F + + +A ++YE + ++ +
Sbjct: 180 CCFKKILNAGCKVDTETYNSLITLFLNKGLPYKAFEMYESMEKAGCSLDGSTYELMIPNL 239
Query: 382 VVSKQLD--MRLFSKV-VRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGG 438
S +LD +LF ++ VR FR NV ++++S+ KA GR+ K+ M G
Sbjct: 240 AKSGRLDAAFKLFQEMKVRGFRPGLNVFA-SLVDSMGKA----GRLDSAMKVYMEMRGYG 294
Query: 439 FIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAA 498
+ + + +GK + A D M +G ++ +I+ H +G L+ A
Sbjct: 295 YKPPPTIYVSLIESYVKSGKLETALRLWDEMRMAGFRPNFGLYTLIIESHAKSGKLEIAM 354
Query: 499 DCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIK 558
F M EK G L+ + + + ID ++N + L+P +TY L+
Sbjct: 355 STFLDM-EKAGFLPTPSTYACLLEMHAASGQ-IDPAMKLYNSMTNAGLRPGLSTYTVLLT 412
Query: 559 NLLVQRGFKDALSLLCLMKDHGFPPFV---DPFIKYVSKSGTSDDAIAFLKGMTSKRFPS 615
L ++ A +L MK G+ V D + Y+ K G+ D A+ +L+ M S +
Sbjct: 413 LLANKKLVDVAAKILLEMKAMGYSVDVTASDILMVYI-KEGSVDLALRWLRFMGSSGIRT 471
Query: 616 MSVVL-CLFAAFFQARRHSEAQDLLSKCPRYVRNHADVLNLLYS 658
+ ++ LF + ++ A+ LL YV + A V +LY+
Sbjct: 472 NNFIIRQLFESCMKSGLFESAKPLLET---YVNSAAKVDLILYT 512
>gi|225464138|ref|XP_002265372.1| PREDICTED: pentatricopeptide repeat-containing protein At5g46100
[Vitis vinifera]
gi|296087974|emb|CBI35257.3| unnamed protein product [Vitis vinifera]
Length = 503
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 73/315 (23%), Positives = 127/315 (40%), Gaps = 7/315 (2%)
Query: 282 KKALIFF--RWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETC 339
+KA++ F AE + +H +++ M S L + ++L M+ + + +
Sbjct: 29 QKAIVIFDSATAEYTNGFRHSHQTFSLMISRLVSANHFRLAEELLCRMKEEKCNITEDIF 88
Query: 340 VKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVF 399
+ + + + +AV ++ + +PS + +V QL + L + R
Sbjct: 89 LSICRAYGRVHKPLDAVRVFRKMKEYECEPSQKSYITVFAILVGENQLKLAL--RFYRYM 146
Query: 400 RENGNVLTDAMLNSVLKALI-SVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGK 458
RE G + A LN ++KAL + G M +I + M G S + L GK
Sbjct: 147 REMGIPPSVASLNVLIKALCKNSGTMDAALRIFREMPNRGCPPDSYTYGTLINGLCRLGK 206
Query: 459 KDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAID 518
EA E ME + SLI G C + DLD A ++M K G +
Sbjct: 207 IGEAKELFKEMETKACSPTVVTYTSLIHGLCQSKDLDSAIRLLEEMASK-GIKPNVFTYS 265
Query: 519 LLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKD 578
L++ +C + A + + V L P TY L+ L + ++A+ +L MK
Sbjct: 266 SLMDGHCKSGCSSRALELLDMMVSRRHL-PNMITYSTLVHGLCKEGKLQEAVEILDRMKL 324
Query: 579 HGFPPFVDPFIKYVS 593
G P + K +S
Sbjct: 325 QGLRPDAGLYGKIIS 339
Score = 41.6 bits (96), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 52/234 (22%), Positives = 93/234 (39%), Gaps = 16/234 (6%)
Query: 279 DEPKKALIFFRWAEESGFVKHDESSYNAMASVLGRED-CIDRFWKVLDEMRSKGYEMEME 337
++ K AL F+R+ E G + +S N + L + +D ++ EM ++G +
Sbjct: 134 NQLKLALRFYRYMREMG-IPPSVASLNVLIKALCKNSGTMDAALRIFREMPNRGCPPDSY 192
Query: 338 TCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVR 397
T ++ + EA +L++ P+V T L+ + SK LD +R
Sbjct: 193 TYGTLINGLCRLGKIGEAKELFKEMETKACSPTVVTYTSLIHGLCQSKDLD-----SAIR 247
Query: 398 VFRENG------NVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAF 451
+ E NV T +S++ G ++L M + + S +
Sbjct: 248 LLEEMASKGIKPNVFT---YSSLMDGHCKSGCSSRALELLDMMVSRRHLPNMITYSTLVH 304
Query: 452 RLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMV 505
L GK EA E +D M+ G ++ +I G C +AA+ +MV
Sbjct: 305 GLCKEGKLQEAVEILDRMKLQGLRPDAGLYGKIISGFCDICKFHEAANFLDEMV 358
>gi|12320851|gb|AAG50561.1|AC073506_3 hypothetical protein [Arabidopsis thaliana]
Length = 802
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 73/335 (21%), Positives = 131/335 (39%), Gaps = 9/335 (2%)
Query: 250 WGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMAS 309
W E Q+R+L + V V+ DE + AL FF WA+ +HD Y +M
Sbjct: 157 WNPKHEGQMRNLLRSLKPSQVCAVLRSQDDE-RVALKFFYWADRQWRYRHDPMVYYSMLE 215
Query: 310 VLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKP 369
VL + +VL M+ +G E +V+ +S +++A+ + +P
Sbjct: 216 VLSKTKLCQGSRRVLVLMKRRGIYRTPEAFSRVMVSYSRAGQLRDALKVLTLMQRAGVEP 275
Query: 370 SVNCCTFLLRKIVVSKQLDMRL-FSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECN 428
++ C + V + +L+ L F + ++V NV+T N +++ + R+ E
Sbjct: 276 NLLICNTTIDVFVRANRLEKALRFLERMQVVGIVPNVVT---YNCMIRGYCDLHRVEEAI 332
Query: 429 KILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGH 488
++L+ M G + I L + E + M M V D++ + +
Sbjct: 333 ELLEDMHSKGCLPDKVSYYTIMGYLCKEKRIVEVRDLMKKMAKEHGLVPDQVTYNTLIHM 392
Query: 489 CVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKP 548
D A F K +++G +V+ C + R +A + + E D P
Sbjct: 393 LTKHDHADEALWFLKDAQEKGFRIDKLGYSAIVHALCKEGRMSEA----KDLINEMDCPP 448
Query: 549 WHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPP 583
TY ++ A LL +M HG P
Sbjct: 449 DVVTYTAVVNGFCRLGEVDKAKKLLQVMHTHGHKP 483
Score = 48.9 bits (115), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 65/297 (21%), Positives = 120/297 (40%), Gaps = 12/297 (4%)
Query: 279 DEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMET 338
D +AL F + A+E GF + D+ Y+A+ L +E + +++EM ++ T
Sbjct: 397 DHADEALWFLKDAQEKGF-RIDKLGYSAIVHALCKEGRMSEAKDLINEMDCPP---DVVT 452
Query: 339 CVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIV-VSKQLDMRLFSKVVR 397
V+ F V +A L + +KP+ T LL + K L+ R +
Sbjct: 453 YTAVVNGFCRLGEVDKAKKLLQVMHTHGHKPNTVSYTALLNGMCRTGKSLEAREMMNMSE 512
Query: 398 VFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAG 457
+ N +T ++ ++ L G++ E +++ M GF + + L G
Sbjct: 513 EHWWSPNSITYSV---IMHGLRREGKLSEACDVVREMVLKGFFPGPVEINLLLQSLCRDG 569
Query: 458 KKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAG-YA 516
+ EA +FM+ G + + ++I G C +LD A M HA +
Sbjct: 570 RTHEARKFMEECLNKGCAINVVNFTTVIHGFCQNDELDAALSVLDDMYLI--NKHADVFT 627
Query: 517 IDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLL 573
LV+T K R +A + + + + + P TY +I D +++L
Sbjct: 628 YTTLVDTLGKKGRIAEATELMKKMLHK-GIDPTPVTYRTVIHRYCQMGKVDDLVAIL 683
>gi|115460498|ref|NP_001053849.1| Os04g0612800 [Oryza sativa Japonica Group]
gi|38568022|emb|CAE05207.3| OSJNBa0070C17.14 [Oryza sativa Japonica Group]
gi|113565420|dbj|BAF15763.1| Os04g0612800 [Oryza sativa Japonica Group]
Length = 784
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 88/383 (22%), Positives = 157/383 (40%), Gaps = 49/383 (12%)
Query: 282 KKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVK 341
+ A F+ ++GF + +YNA+ S+L + ++VLDEM S G ++ T
Sbjct: 207 EPAFFCFKRLRDAGFRVLETHAYNALLSLLLTRGLAFKAFEVLDEMSSSGCALDEGTYEL 266
Query: 342 VLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRE 401
V+ + + A +++ +MR RE
Sbjct: 267 VVPALARAGRIDAARKMFD---------------------------EMRK--------RE 291
Query: 402 NGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDE 461
+ M ++ L GR+ + + M G AS + + + L AGK D
Sbjct: 292 GIGRASAGMYGVLVDVLAKAGRLDAAMGMYREMVAVGHRASPAVSTAVVEGLVRAGKLDA 351
Query: 462 ANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEG--TSHAGYAIDL 519
E + M G ++ +++ + +G LD A F M EK G + A YA
Sbjct: 352 GMELWEEMRRGGLRPSFGLYTMVVEANARSGRLDVATQLFGDM-EKSGFFPTPATYAC-- 408
Query: 520 LVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDH 579
LV + S + +DA +++ + +P +T+ L+ L +R A +L MK
Sbjct: 409 LVEMHASAGQ-VDAAMRLYHSMANAGQRPGLSTFTALLMMLANKRMLDLAAKVLLEMKAS 467
Query: 580 GFPPFV---DPFIKYVSKSGTSDDAIAFLKGMTSKRFPSMSVVL-CLFAAFFQARRHSEA 635
GFP V D + Y+ K G+++ A+ +L+ M S + + ++ LF + + + A
Sbjct: 468 GFPIEVTASDLLMIYI-KEGSTELALRWLRFMGSAGIRTNNFIIRQLFESCMKTGLYDSA 526
Query: 636 QDLLSKCPRYVRNHADVLNLLYS 658
+ LL YV A V +LY+
Sbjct: 527 RPLLET---YVAGAAKVDLILYT 546
>gi|302758676|ref|XP_002962761.1| hypothetical protein SELMODRAFT_165305 [Selaginella moellendorffii]
gi|300169622|gb|EFJ36224.1| hypothetical protein SELMODRAFT_165305 [Selaginella moellendorffii]
Length = 707
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 76/343 (22%), Positives = 142/343 (41%), Gaps = 46/343 (13%)
Query: 303 SYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFA 362
+YN + S L ++ +DR ++DE S G+ ++ T + +R + EA +L +
Sbjct: 82 TYNTLISGLCKQQNVDRAKTLVDEFVSSGFVPDVVTYSILADGLCKRGRIDEAFELVK-- 139
Query: 363 MACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVG 422
+ S N CT N++T N+++ L
Sbjct: 140 -----EMSGNGCT---------------------------PNLVT---YNTLIDGLCKAS 164
Query: 423 RMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWV 482
+ + ++L+ + GF+ + I L G+ D+A + ++ M G +
Sbjct: 165 KTEKAYELLETLVSSGFVPDVVTYTIIVDGLCKEGRLDKALKMVEGMLKRGCTPSVITYT 224
Query: 483 SLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVR 542
+L++G C G +D+A F++MV K+ T+ A A LVN YC +R +A K V +R
Sbjct: 225 ALMEGLCRTGRVDEAHHIFKEMVSKDCTADA-LAYVSLVNGYCKSSRTKEAQKVVDG-IR 282
Query: 543 EYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPF---IKYVSKSGTSD 599
P+ Y L+ + + ++ M G P + + + + K G D
Sbjct: 283 G---TPYIDVYNALMDGYCKEGRLDEIPNVFEDMACRGCVPNIKTYNIVMDGLCKHGKVD 339
Query: 600 DAIAFLKGMTSKR-FPSMSVVLCLFAAFFQARRHSEAQDLLSK 641
+A FL+ M S P + + F+A + EA+ +L +
Sbjct: 340 EAFPFLESMHSAGCVPDVVSYNIIIDGLFKASKPKEARQVLDQ 382
Score = 59.3 bits (142), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 106/485 (21%), Positives = 189/485 (38%), Gaps = 30/485 (6%)
Query: 154 VLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRNKMTEKFEKEG 213
V+ + + R S TYN ++ + V LVD G+ + + + K G
Sbjct: 70 VMAERNCRPSCCTYNTLISGLCKQQNVDRAKTLVDEFVSSGFVPDVVTYSILADGLCKRG 129
Query: 214 -LESDLEKLKGIFATGSIDNSI--EKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLV 270
++ E +K + G N + + +CK +++ + +E + + F D+V
Sbjct: 130 RIDEAFELVKEMSGNGCTPNLVTYNTLIDGLCKASKTEKAYELLETLV---SSGFVPDVV 186
Query: 271 KF--VVDKLGDEPK--KALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDE 326
+ +VD L E + KAL + G +Y A+ L R +D + E
Sbjct: 187 TYTIIVDGLCKEGRLDKALKMVEGMLKRGCTPS-VITYTALMEGLCRTGRVDEAHHIFKE 245
Query: 327 MRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQ 386
M SK + V ++ + + + KEA + + + P ++ L+ +
Sbjct: 246 MVSKDCTADALAYVSLVNGYCKSSRTKEAQKVVD---GIRGTPYIDVYNALMDGYCKEGR 302
Query: 387 LDMRLFSKVVRVFRE---NGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASS 443
LD ++ VF + G V N V+ L G++ E L++M G +
Sbjct: 303 LD-----EIPNVFEDMACRGCVPNIKTYNIVMDGLCKHGKVDEAFPFLESMHSAGCVPDV 357
Query: 444 NMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQK 503
+ I L A K EA + +D M +G + +L+ C D A +
Sbjct: 358 VSYNIIIDGLFKASKPKEARQVLDQMIQAGIPPDAVTYNTLMAQFCKEERFDDAVGILKN 417
Query: 504 MVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQ 563
M+ K G + L++ NR DA + +H +R + TTY +I L +
Sbjct: 418 MI-KAGVDPDNVTYNTLISGLSQTNRLGDAYELMHEMLRNGCVVSACTTYNTIIDRLCKE 476
Query: 564 RGFKDALSLLCLMKDHGFPPFV---DPFIKYVSKSGTSDDAIAFLKGMTSKR----FPSM 616
K AL L+ M HG + FI + K G D+A + L M + R + ++
Sbjct: 477 GCLKQALLLMDHMTGHGVEANTVTYNIFIDRLCKEGRLDEASSLLSEMDTLRDEVSYTTV 536
Query: 617 SVVLC 621
+ LC
Sbjct: 537 IIGLC 541
Score = 43.9 bits (102), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 77/354 (21%), Positives = 141/354 (39%), Gaps = 20/354 (5%)
Query: 165 KTYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRNKMTEKFEKEGLESDLEK-LKG 223
KTYN+++ + HG V E + ++ M G N + + K + + L
Sbjct: 323 KTYNIVMDGLCKHGKVDEAFPFLESMHSAGCVPDVVSYNIIIDGLFKASKPKEARQVLDQ 382
Query: 224 IFATGSIDNSI--EKVASRICKVVRSD----IWGDDVERQLRDLNVTFSNDLVKFV--VD 275
+ G +++ + ++ CK R D I + ++ + NVT+ N L+ + +
Sbjct: 383 MIQAGIPPDAVTYNTLMAQFCKEERFDDAVGILKNMIKAGVDPDNVTY-NTLISGLSQTN 441
Query: 276 KLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEME 335
+LGD A +G V ++YN + L +E C+ + ++D M G E
Sbjct: 442 RLGD----AYELMHEMLRNGCVVSACTTYNTIIDRLCKEGCLKQALLLMDHMTGHGVEAN 497
Query: 336 METCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKV 395
T + R + + EA L +++ S T ++ + ++QLD SK+
Sbjct: 498 TVTYNIFIDRLCKEGRLDEASSLLSEMDTLRDEVSY---TTVIIGLCKAEQLDRA--SKL 552
Query: 396 VR-VFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLS 454
R + G +T N ++ A R+ E +L+ M + G S + + L
Sbjct: 553 AREMVAVKGLCITSHTFNLLIDAFTKTKRLDEALTLLELMVQRGCSPSVITYNMVITCLC 612
Query: 455 SAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKE 508
K D+A E D M G + LI G C G +A ++M +
Sbjct: 613 KLDKVDKAWELFDEMAVRGIVASSVSYTVLIYGLCGQGRGKEALQVLEEMASSD 666
Score = 42.7 bits (99), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 63/294 (21%), Positives = 123/294 (41%), Gaps = 14/294 (4%)
Query: 272 FVVDKLGDEPK--KALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRS 329
V+D L K +A F +G V D SYN + L + +VLD+M
Sbjct: 327 IVMDGLCKHGKVDEAFPFLESMHSAGCVP-DVVSYNIIIDGLFKASKPKEARQVLDQMIQ 385
Query: 330 KGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLD- 388
G + T ++ +F + +AV + + + P L+ + + +L
Sbjct: 386 AGIPPDAVTYNTLMAQFCKEERFDDAVGILKNMIKAGVDPDNVTYNTLISGLSQTNRLGD 445
Query: 389 -MRLFSKVVRVFRENGNVLTDAML-NSVLKALISVGRMGECNKILKAMEEGGFIASSNMK 446
L +++R NG V++ N+++ L G + + ++ M G A++
Sbjct: 446 AYELMHEMLR----NGCVVSACTTYNTIIDRLCKEGCLKQALLLMDHMTGHGVEANTVTY 501
Query: 447 SKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVE 506
+ RL G+ DEA+ + M+ +V + ++I G C A LD+A+ ++MV
Sbjct: 502 NIFIDRLCKEGRLDEASSLLSEMDTLRDEVS---YTTVIIGLCKAEQLDRASKLAREMVA 558
Query: 507 KEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNL 560
+G + +LL++ + +K + +D + + + P TY +I L
Sbjct: 559 VKGLCITSHTFNLLIDAF-TKTKRLDEALTLLELMVQRGCSPSVITYNMVITCL 611
>gi|242038757|ref|XP_002466773.1| hypothetical protein SORBIDRAFT_01g013990 [Sorghum bicolor]
gi|241920627|gb|EER93771.1| hypothetical protein SORBIDRAFT_01g013990 [Sorghum bicolor]
Length = 487
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 96/466 (20%), Positives = 192/466 (41%), Gaps = 56/466 (12%)
Query: 117 ISKQLELSGVVFTHEMVLKVLKNLESSPDEARRFFNWVLEKESERLSS--KTYNLMLRIV 174
+ +L+ SGV T E+ +VL+ L+++ A RFF W ++ + ++Y+ ++ +
Sbjct: 55 VEHELDHSGVRVTPEVAERVLERLDNAGMLAYRFFEWARRQKRGGCAHTVRSYHTVVASL 114
Query: 175 GVHGLVQEFWGLVDVMKKKGYGVASHVRNKM-----TEKFEKEGLESDLEKLKGIFATGS 229
Q W +V VM+K+G M +KF++ ++ + G+ +
Sbjct: 115 AKIRQYQLMWDVVAVMRKEGVANVETFSIIMRKYARAQKFDEAVYTFNIMERYGVAHNLA 174
Query: 230 IDNSIEKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFR 289
NS+ +CK + +R F DK+ +
Sbjct: 175 AFNSL---LGALCK-----------SKNVRKAQEIF---------DKMNNR--------- 202
Query: 290 WAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSER 349
D +Y+ + GR + + +V +M + G + ++ T ++ +
Sbjct: 203 -------FSPDAKTYSILLEGWGRAPNLPKMREVYSDMLAAGCQPDIVTYGIMVDALCKT 255
Query: 350 NMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVF-RENGNVLTD 408
V+EAV + + + +P+ TF+ +V + +DMR+ V E ++ D
Sbjct: 256 GRVEEAVCVVQDMSSRGCQPT----TFIYSVLVHTYGVDMRIEDAVATFLDMEKDGIVPD 311
Query: 409 AML-NSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMD 467
++ N+++ A V + +++ ME G +S + I L S GK DEA
Sbjct: 312 VVVYNALVTAFCKVKKFDNAFRVMDDMEGHGISPNSRTWNIILNTLISLGKDDEAYRVFR 371
Query: 468 HMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSK 527
+M D + +IK C ++ A ++ M K+ + + +L+N C K
Sbjct: 372 NMIKRCKPDSDT-YTMMIKMFCENDKIEMALKVWKYMRLKQFLP-SMHTFSVLINGLCDK 429
Query: 528 NRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLL 573
AC + + + E ++P +T+ +L + LL++ G KD L L
Sbjct: 430 GEVSQACVLLEDMI-EKGIRPPGSTFGKL-RQLLLKEGRKDVLDFL 473
Score = 50.1 bits (118), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 89/415 (21%), Positives = 161/415 (38%), Gaps = 47/415 (11%)
Query: 237 VASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWA--EES 294
+A R+CK++ S VE +L V + ++ + V+++L + A FF WA ++
Sbjct: 38 LAKRLCKLIISCRKASAVEHELDHSGVRVTPEVAERVLERLDNAGMLAYRFFEWARRQKR 97
Query: 295 GFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKE 354
G H SY+ + + L + W V+ MR +G +ET ++ +++ E
Sbjct: 98 GGCAHTVRSYHTVVASLAKIRQYQLMWDVVAVMRKEGVA-NVETFSIIMRKYARAQKFDE 156
Query: 355 AVDLYEFAMACKNKPSVNCCTF--LLRKIVVSKQL----------------DMRLFSKVV 396
AV Y F + + + N F LL + SK + D + +S ++
Sbjct: 157 AV--YTFNIMERYGVAHNLAAFNSLLGALCKSKNVRKAQEIFDKMNNRFSPDAKTYSILL 214
Query: 397 RVFRENGN------VLTDAMLNS----------VLKALISVGRMGECNKILKAMEEGGFI 440
+ N V +D + ++ AL GR+ E +++ M G
Sbjct: 215 EGWGRAPNLPKMREVYSDMLAAGCQPDIVTYGIMVDALCKTGRVEEAVCVVQDMSSRGCQ 274
Query: 441 ASSNMKSKIAFRLSSAGK-KDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAAD 499
++ + S + + +D F+D ME G ++ +L+ C D A
Sbjct: 275 PTTFIYSVLVHTYGVDMRIEDAVATFLD-MEKDGIVPDVVVYNALVTAFCKVKKFDNAFR 333
Query: 500 CFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKN 559
M E G S ++++NT S + +A + N ++ KP TY +IK
Sbjct: 334 VMDDM-EGHGISPNSRTWNIILNTLISLGKDDEAYRVFRNMIKR--CKPDSDTYTMMIKM 390
Query: 560 LLVQRGFKDALSLLCLMKDHGFPPFVDPF---IKYVSKSGTSDDAIAFLKGMTSK 611
+ AL + M+ F P + F I + G A L+ M K
Sbjct: 391 FCENDKIEMALKVWKYMRLKQFLPSMHTFSVLINGLCDKGEVSQACVLLEDMIEK 445
>gi|50508175|dbj|BAD30981.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
gi|50508218|dbj|BAD31653.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
Length = 918
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 69/334 (20%), Positives = 134/334 (40%), Gaps = 8/334 (2%)
Query: 316 CIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCT 375
C + W++ +M++KG E + T ++ ++K A+ L+ P+
Sbjct: 335 CYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGLLKVAIGLFHRMSRDGVFPNTVTYN 394
Query: 376 FLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAME 435
L+ +V ++++ V+ + NG N ++K +G + ++ M
Sbjct: 395 ALINILVENRRIKYAFV--VLNLMGRNGCSPNIVTYNEMIKGYCILGDPKKAMLVMNNML 452
Query: 436 EGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLD 495
+ G A+ + I +G A +D M G + + LI G C ++
Sbjct: 453 QRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGFCKISKME 512
Query: 496 KAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEE 555
A F +MV+ +G L++ YC K+ +D + ++ +P TY
Sbjct: 513 SAFGLFNEMVD-DGLCPNEVTYTALIDGYC-KDEKLDTATSLLEHMKRSGCRPNVQTYNV 570
Query: 556 LIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPF---IKYVSKSGTSDDAIAFLKGMTSKR 612
LI L Q F A L +M + G P V + I + K+G++ A+ M +
Sbjct: 571 LIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALEMFNKMIEQG 630
Query: 613 -FPSMSVVLCLFAAFFQARRHSEAQDLLSKCPRY 645
P++ L A Q + EA++L ++ R+
Sbjct: 631 CLPNLLTYSSLIRALGQEGKVEEAENLFAELERH 664
Score = 46.2 bits (108), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 46/200 (23%), Positives = 82/200 (41%), Gaps = 5/200 (2%)
Query: 412 NSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEA 471
++++ L GR+ E +++ M G + +++ + L G ++A M+
Sbjct: 289 STLINGLCDSGRVNEAFDLIREMILHGILPTAHTCTGPIIALCDMGCYEDAWRLFVDMKN 348
Query: 472 SGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAI 531
G + + +LI G CV+G L A F +M ++G + L+N +NR I
Sbjct: 349 KGCEPNVYTYTALISGLCVSGLLKVAIGLFHRM-SRDGVFPNTVTYNALINILV-ENRRI 406
Query: 532 DACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFV---DPF 588
V N + P TY E+IK + K A+ ++ M G + +
Sbjct: 407 KYAFVVLNLMGRNGCSPNIVTYNEMIKGYCILGDPKKAMLVMNNMLQRGHSANLVTYNTI 466
Query: 589 IKYVSKSGTSDDAIAFLKGM 608
IK SG + A+ L M
Sbjct: 467 IKGYCDSGNTTSALRILDLM 486
>gi|255660836|gb|ACU25587.1| pentatricopeptide repeat-containing protein [Lampayo castellani]
Length = 418
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 64/292 (21%), Positives = 116/292 (39%), Gaps = 5/292 (1%)
Query: 266 SNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLD 325
+ +L++ VV + G + A +F E G + D ++ + + + +
Sbjct: 32 AKNLIQIVVSRKGKDSASA-VFEAILEAKGAQRSDVYVFSGLITAYLESGFLHDALECFR 90
Query: 326 EMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSK 385
R + + +TC KVL F + K Y+ + C S+ L+ + K
Sbjct: 91 LTREHKFWVPFDTCRKVLEHFMKLKYFKLVWGFYKEILECGYPASLYFFNILMHRFC--K 148
Query: 386 QLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNM 445
+ +MRL V + G + N+++ I +G + E ++ AM G
Sbjct: 149 EGEMRLAQSVFDEITKWGLRPSVVSFNTLMNGYIRLGDLDEGFRLKSAMHASGVQPDVYT 208
Query: 446 KSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMV 505
S + L K ++ANE M +G + +LI GHC G +D A + +++M+
Sbjct: 209 YSVLINGLCKESKMNDANELFGEMIGNGLVPNGVTFTTLIDGHCKTGSIDLAMETYKEML 268
Query: 506 EKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELI 557
++G S + L+ C K A + + LKP TY LI
Sbjct: 269 -RQGFSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMK-GLKPDKITYTTLI 318
Score = 49.7 bits (117), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 44/184 (23%), Positives = 73/184 (39%), Gaps = 2/184 (1%)
Query: 402 NGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDE 461
NG V +++ G + + K M GF + + + L G +
Sbjct: 235 NGLVPNGVTFTTLIDGHCKTGSIDLAMETYKEMLRQGFSPDLITYNTLIYGLCKKGDLKQ 294
Query: 462 ANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLV 521
A + +D M G + +LI G C GDL+ A ++M+ KE A L+
Sbjct: 295 AQDLIDEMSMKGLKPDKITYTTLIDGSCKEGDLETALYYRKRMI-KENIRLDDVAYTALI 353
Query: 522 NTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGF 581
+ C + +++DA K + + LKP + TY +I + K LL M+ G
Sbjct: 354 SGLCREGQSVDAEKMLREML-SVGLKPDNGTYTMIINEFCKKGDVKTGSKLLKEMQRDGH 412
Query: 582 PPFV 585
P V
Sbjct: 413 VPCV 416
>gi|224141013|ref|XP_002323869.1| predicted protein [Populus trichocarpa]
gi|222866871|gb|EEF04002.1| predicted protein [Populus trichocarpa]
Length = 1158
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/173 (28%), Positives = 83/173 (47%), Gaps = 2/173 (1%)
Query: 411 LNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHME 470
L++V+ L +G + + ++ + +E G+I S ++ I L K + A +F+D M
Sbjct: 905 LSTVITFLCDIGELDKVLELSREIELKGWILGSIAQNAIVEGLLFQDKVEAAKQFLDRMV 964
Query: 471 ASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRA 530
G + +LIK C G LDKA D M+ K+G + + D ++ +CS+N+
Sbjct: 965 YKGLTPQSISYDNLIKRFCCLGRLDKAIDLLNVML-KKGNMPSSTSYDSVICGFCSRNQL 1023
Query: 531 IDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPP 583
A F H + + +LKP T++ L+K Q +A LL M G P
Sbjct: 1024 NQAMDF-HAEMLDRNLKPSINTWDLLVKQYCQQGQPAEAAKLLLSMVQVGETP 1075
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 57/268 (21%), Positives = 115/268 (42%), Gaps = 10/268 (3%)
Query: 322 KVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKI 381
KVL+E++ +G + T ++ FS+ V + ++ + +PS +
Sbjct: 853 KVLNELQEEGLVLNEVTYNFLVYGFSKCKDVSTGMHYLSTMISKELRPSYRSLS-----T 907
Query: 382 VVSKQLDMRLFSKVVRVFRE---NGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGG 438
V++ D+ KV+ + RE G +L N++++ L+ ++ + L M G
Sbjct: 908 VITFLCDIGELDKVLELSREIELKGWILGSIAQNAIVEGLLFQDKVEAAKQFLDRMVYKG 967
Query: 439 FIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAA 498
S + R G+ D+A + ++ M G+ + S+I G C L++A
Sbjct: 968 LTPQSISYDNLIKRFCCLGRLDKAIDLLNVMLKKGNMPSSTSYDSVICGFCSRNQLNQAM 1027
Query: 499 DCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIK 558
D +M+++ DLLV YC + + +A K + + V+ + P Y +I
Sbjct: 1028 DFHAEMLDRNLKPSIN-TWDLLVKQYCQQGQPAEAAKLLLSMVQVGE-TPTRLMYCSVID 1085
Query: 559 NLLVQRGFKDALSLLCLMKDHGFPPFVD 586
++ + A L+ +M+ G+ P D
Sbjct: 1086 GYRMENNPRKASELMQMMQQSGYEPDFD 1113
>gi|413950073|gb|AFW82722.1| hypothetical protein ZEAMMB73_503137 [Zea mays]
Length = 620
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 66/284 (23%), Positives = 113/284 (39%), Gaps = 12/284 (4%)
Query: 302 SSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEF 361
+SYNA+ L RE + + V+ +M +G + + T ++ F + ++ A +
Sbjct: 202 ASYNAIVLALCREFRMQEVFSVVSDMVGRGLQPNVITYTTIVDAFCKAGELRMACAILAR 261
Query: 362 AMACKNKPSVNCCTFLLRKIV----VSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKA 417
+ P+V T L+R + V LDM R G + N +++
Sbjct: 262 MVITGCTPNVVTFTALVRGLFDDGRVHDALDMW------RWMVAEGWAPSTVSYNILIRG 315
Query: 418 LISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVG 477
L SVG + + IL +ME+ G + S + S AG A + M SG
Sbjct: 316 LCSVGDLKGASSILNSMEQHGCFPNVRTYSTLIDGFSKAGDLGGAISIWNDMSRSGCKPN 375
Query: 478 DKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFV 537
++ +++ C ++A KM+ E + L+ + C R A
Sbjct: 376 VVVYTNMVDVFCKKLMFNQAKSLIDKML-LENCPPNTVTFNTLIRSLCDCRRVGRALGVF 434
Query: 538 HNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGF 581
H +R + P TY ELI L + DAL ++ M+ HG
Sbjct: 435 HE-MRRHGCVPNGRTYNELIHGLFREGNCGDALHMVTEMQSHGI 477
>gi|147810269|emb|CAN75824.1| hypothetical protein VITISV_004157 [Vitis vinifera]
Length = 1512
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 78/359 (21%), Positives = 145/359 (40%), Gaps = 14/359 (3%)
Query: 282 KKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVK 341
K+AL FF+ E G + D +YN++ L R L+ M +G+ + T
Sbjct: 1137 KEALEFFKEMEGRG-ISADVYTYNSLIHGLSRAGLWKEVTWFLNLMVDRGFSPDAFTFTI 1195
Query: 342 VLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRE 401
++ + V EA + E +P + L+ + + QL+ +K+ +
Sbjct: 1196 LIDGLCKEGKVGEAQQILELMRHKGKEPDILTYNTLMNGLCLVGQLEDA--TKLFESLAD 1253
Query: 402 NGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDE 461
G L N ++ ++ E + + M G S+ + + L +G+
Sbjct: 1254 RGIKLNVFSYNILINGYCKDQKIDEAFRFFEEMRPKGLKPSTVTYNTLIGALCQSGRVRT 1313
Query: 462 ANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLV 521
A + M+ G + + L+ G C G L++A D FQ + + E + +L+
Sbjct: 1314 AQKLFVEMQTCGQFLKLSTYCVLLDGLCKNGHLEEAMDLFQSIKKTEHKPNI-EVFSILL 1372
Query: 522 NTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGF 581
+ C + +A K + + L+P Y LI L + +A+ LL M++ G
Sbjct: 1373 DGMCRAGKLEEAWKQFDE-ISKNGLEPDTIAYNILINGLCNKGMLSEAVKLLWQMEEKGC 1431
Query: 582 PPFVDPF---IKYVSKSGTSDDAIAFLKGMTSKRFPS----MSVVLCLFAAFFQARRHS 633
P F I+ + K +AI L+ M ++ F S++LCL A F + H+
Sbjct: 1432 LPDSITFNVIIQNLLKENEIHEAIQLLEEMRNRNFSPDEAVTSMLLCL--ASFDPQWHA 1488
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 63/252 (25%), Positives = 98/252 (38%), Gaps = 12/252 (4%)
Query: 403 GNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEA 462
G+V T M ++ AL G E + M G + + S + L G+ EA
Sbjct: 1083 GDVFTYGM---IIDALCKDGMTTEALDMFSEMIGAGILPDVVVYSSLMDGLCRFGRLKEA 1139
Query: 463 NEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVN 522
EF ME G + SLI G AG L K F ++ G S + +L++
Sbjct: 1140 LEFFKEMEGRGISADVYTYNSLIHGLSRAG-LWKEVTWFLNLMVDRGFSPDAFTFTILID 1198
Query: 523 TYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFP 582
C + + +A + + +R +P TY L+ L + +DA L + D G
Sbjct: 1199 GLCKEGKVGEAQQILE-LMRHKGKEPDILTYNTLMNGLCLVGQLEDATKLFESLADRGIK 1257
Query: 583 PFV---DPFIKYVSKSGTSDDAIAFLKGMTSKRF-PSMSVVLCLFAAFFQARRHSEAQDL 638
V + I K D+A F + M K PS L A Q+ R AQ L
Sbjct: 1258 LNVFSYNILINGYCKDQKIDEAFRFFEEMRPKGLKPSTVTYNTLIGALCQSGRVRTAQKL 1317
Query: 639 ---LSKCPRYVR 647
+ C ++++
Sbjct: 1318 FVEMQTCGQFLK 1329
Score = 48.1 bits (113), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 72/336 (21%), Positives = 147/336 (43%), Gaps = 24/336 (7%)
Query: 146 EARRFFNWVLEKESERLSSK--TYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRN 203
EA FF E E +S+ TYN ++ + GL +E +++M +G+ +
Sbjct: 1138 EALEFFK---EMEGRGISADVYTYNSLIHGLSRAGLWKEVTWFLNLMVDRGFSPDAFTFT 1194
Query: 204 KMTEKFEKEGLESDLEKLKGIFATGSIDNSI---EKVASRICKVVR----SDIWGDDVER 256
+ + KEG + +++ + + I + + +C V + + ++ +R
Sbjct: 1195 ILIDGLCKEGKVGEAQQILELMRHKGKEPDILTYNTLMNGLCLVGQLEDATKLFESLADR 1254
Query: 257 QLRDLNVTFSNDLVK-FVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGRED 315
++ LNV N L+ + D+ DE A FF G +K +YN + L +
Sbjct: 1255 GIK-LNVFSYNILINGYCKDQKIDE---AFRFFEEMRPKG-LKPSTVTYNTLIGALCQSG 1309
Query: 316 CIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCT 375
+ K+ EM++ G +++ T +L + ++EA+DL++ ++KP++ +
Sbjct: 1310 RVRTAQKLFVEMQTCGQFLKLSTYCVLLDGLCKNGHLEEAMDLFQSIKKTEHKPNIEVFS 1369
Query: 376 FLLRKIVVSKQLD--MRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKA 433
LL + + +L+ + F ++ + NG N ++ L + G + E K+L
Sbjct: 1370 ILLDGMCRAGKLEEAWKQFDEISK----NGLEPDTIAYNILINGLCNKGMLSEAVKLLWQ 1425
Query: 434 MEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHM 469
MEE G + S + I L + EA + ++ M
Sbjct: 1426 MEEKGCLPDSITFNVIIQNLLKENEIHEAIQLLEEM 1461
>gi|302780731|ref|XP_002972140.1| hypothetical protein SELMODRAFT_450859 [Selaginella moellendorffii]
gi|300160439|gb|EFJ27057.1| hypothetical protein SELMODRAFT_450859 [Selaginella moellendorffii]
Length = 482
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 77/332 (23%), Positives = 130/332 (39%), Gaps = 17/332 (5%)
Query: 269 LVKFVVDKL--GDEPKKALIFFRWAEE-SGFVKHDESSYNAMASVLGREDCIDRFWKVLD 325
LV +D L D KA +F+ ++ G V + SYN + + + ID ++
Sbjct: 68 LVNITIDSLCKSDMIDKAESWFQELKDFRGLV--NTVSYNILINAFCKTKRIDEAIQLFG 125
Query: 326 EMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSK 385
EM++ G T ++G + EA YE ++ S F+ I+V
Sbjct: 126 EMKAPGCAPSTSTYNTLIGGLCRVERLGEAQQFYERLLSSGAGAS-----FITYNILVDG 180
Query: 386 QLDMRLFSKVVRVFRE---NGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIAS 442
+ V + E G V+T A N ++ L G++ E ME+ G
Sbjct: 181 FCKADRVPEAVELLNELVARGGVVTSAPYNCIIDTLFKKGKIHEAELFFNRMEKDGVRPQ 240
Query: 443 SNMKSKIAFRLSSAGKKDEANE-FMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCF 501
+ + L A + A E F ++E+ GS + L+ G C G +D+A F
Sbjct: 241 EVTFTVLIDGLCKANRVARAKEIFFSYLESGGSP-SVVICSCLMDGFCKYGGVDEAWRIF 299
Query: 502 QKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLL 561
+ M + G + + ++L+N C R A + V+ KP TY + L
Sbjct: 300 ELMTNR-GCTPNDVSCNILINGLCKAKRLSQAREVFEEVVKR-QAKPDVVTYSTFMDGLC 357
Query: 562 VQRGFKDALSLLCLMKDHGFPPFVDPFIKYVS 593
A +LC++ D G P V + +S
Sbjct: 358 RAHRVDQARQVLCMLVDKGGTPDVVMYTALIS 389
Score = 40.4 bits (93), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 50/239 (20%), Positives = 101/239 (42%), Gaps = 16/239 (6%)
Query: 412 NSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEA 471
N ++ A R+ E ++ M+ G S++ + + L + EA +F + + +
Sbjct: 105 NILINAFCKTKRIDEAIQLFGEMKAPGCAPSTSTYNTLIGGLCRVERLGEAQQFYERLLS 164
Query: 472 SGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEG-TSHAGYAIDLLVNTYCSKNRA 530
SG+ + L+ G C A + +A + ++V + G + A Y + +++T K +
Sbjct: 165 SGAGASFITYNILVDGFCKADRVPEAVELLNELVARGGVVTSAPY--NCIIDTLFKKGKI 222
Query: 531 IDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFV----- 585
+A + N + + ++P T+ LI L A + + G P V
Sbjct: 223 HEA-ELFFNRMEKDGVRPQEVTFTVLIDGLCKANRVARAKEIFFSYLESGGSPSVVICSC 281
Query: 586 --DPFIKYVSKSGTSDDAIAFLKGMTSKRF-PSMSVVLCLFAAFFQARRHSEAQDLLSK 641
D F KY G D+A + MT++ P+ L +A+R S+A+++ +
Sbjct: 282 LMDGFCKY----GGVDEAWRIFELMTNRGCTPNDVSCNILINGLCKAKRLSQAREVFEE 336
Score = 40.4 bits (93), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 49/265 (18%), Positives = 99/265 (37%), Gaps = 3/265 (1%)
Query: 302 SSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEF 361
+ YN + L ++ I + M G + T ++ + N V A +++
Sbjct: 207 APYNCIIDTLFKKGKIHEAELFFNRMEKDGVRPQEVTFTVLIDGLCKANRVARAKEIFFS 266
Query: 362 AMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISV 421
+ PSV C+ L+ +D ++ + G D N ++ L
Sbjct: 267 YLESGGSPSVVICSCLMDGFCKYGGVDEAW--RIFELMTNRGCTPNDVSCNILINGLCKA 324
Query: 422 GRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMW 481
R+ + ++ + + + S L A + D+A + + + G M+
Sbjct: 325 KRLSQAREVFEEVVKRQAKPDVVTYSTFMDGLCRAHRVDQARQVLCMLVDKGGTPDVVMY 384
Query: 482 VSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCV 541
+LI G C G LD+A F+ + G + + ++LVN + R +A + V
Sbjct: 385 TALISGLCSLGRLDEARKVFEVDMRAAGCAPNNFTCNVLVNGFGLAGRLDEARELFQRFV 444
Query: 542 REYDLKPWHTTYEELIKNLLVQRGF 566
E ++P T+ + N G+
Sbjct: 445 -ERGVQPDCRTFSAMANNTAKTEGW 468
>gi|125591609|gb|EAZ31959.1| hypothetical protein OsJ_16132 [Oryza sativa Japonica Group]
Length = 756
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 90/385 (23%), Positives = 158/385 (41%), Gaps = 51/385 (13%)
Query: 280 EPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETC 339
EP A F+ ++GF + +YNA+ S+L + ++VLDEM S G ++ T
Sbjct: 164 EP--AFFCFKRLRDAGFRVLETHAYNALLSLLLTRGLAFKAFEVLDEMSSSGCALDEGTY 221
Query: 340 VKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVF 399
V+ + + A +++ +MR
Sbjct: 222 ELVVPALARAGRIDAARKMFD---------------------------EMRK-------- 246
Query: 400 RENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKK 459
RE + M ++ L GR+ + + M G AS + + + L AGK
Sbjct: 247 REGIGRASAGMYGVLVDVLAKAGRLDAAMGMYREMVAVGHRASPAVSTAVVEGLVRAGKL 306
Query: 460 DEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEG--TSHAGYAI 517
D E + M G ++ +++ + +G LD A F M EK G + A YA
Sbjct: 307 DAGMELWEEMRRGGLRPSFGLYTMVVEANARSGRLDVATQLFGDM-EKSGFFPTPATYAC 365
Query: 518 DLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMK 577
LV + S + +DA +++ + +P +T+ L+ L +R A +L MK
Sbjct: 366 --LVEMHASAGQ-VDAAMRLYHSMANAGQRPGLSTFTALLMMLANKRMLDLAAKVLLEMK 422
Query: 578 DHGFPPFV---DPFIKYVSKSGTSDDAIAFLKGMTSKRFPSMSVVL-CLFAAFFQARRHS 633
GFP V D + Y+ K G+++ A+ +L+ M S + + ++ LF + + +
Sbjct: 423 ASGFPIEVTASDLLMIYI-KEGSTELALRWLRFMGSAGIRTNNFIIRQLFESCMKTGLYD 481
Query: 634 EAQDLLSKCPRYVRNHADVLNLLYS 658
A+ LL YV A V +LY+
Sbjct: 482 SARPLLET---YVAGAAKVDLILYT 503
Score = 40.8 bits (94), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 48/218 (22%), Positives = 90/218 (41%), Gaps = 7/218 (3%)
Query: 411 LNSVLKALISVGRMGECNKILKAMEEGGF-IASSNMKSKIAFRLSSAGKKDEANEFMDHM 469
LN+VL AL + G + K + + GF + ++ + + L + G +A E +D M
Sbjct: 150 LNAVLSALATHGLLEPAFFCFKRLRDAGFRVLETHAYNALLSLLLTRGLAFKAFEVLDEM 209
Query: 470 EASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAI-DLLVNTYCSKN 528
+SG + + + ++ AG +D A F +M ++EG A + +LV+
Sbjct: 210 SSSGCALDEGTYELVVPALARAGRIDAARKMFDEMRKREGIGRASAGMYGVLVDVLAKAG 269
Query: 529 RAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPF 588
R +DA ++ + + +++ L+ + L M+ G P +
Sbjct: 270 R-LDAAMGMYREMVAVGHRASPAVSTAVVEGLVRAGKLDAGMELWEEMRRGGLRPSFGLY 328
Query: 589 IKYV---SKSGTSDDAIAFLKGM-TSKRFPSMSVVLCL 622
V ++SG D A M S FP+ + CL
Sbjct: 329 TMVVEANARSGRLDVATQLFGDMEKSGFFPTPATYACL 366
>gi|302808965|ref|XP_002986176.1| hypothetical protein SELMODRAFT_182249 [Selaginella moellendorffii]
gi|300146035|gb|EFJ12707.1| hypothetical protein SELMODRAFT_182249 [Selaginella moellendorffii]
Length = 609
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 64/278 (23%), Positives = 124/278 (44%), Gaps = 7/278 (2%)
Query: 303 SYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFA 362
+Y+A+ L + +VL+EM+++G + T ++ + + ++EA +
Sbjct: 286 TYSALIDGLCKSQKFLEAKEVLEEMKTRGVTPDAFTYSALIHGLCKADKIEEAEQMLRRM 345
Query: 363 MACKNKPSVNCCTFLLRKIVVS-KQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISV 421
P V + ++ S K L+ + + +R R++ +V+T N+V+ L +
Sbjct: 346 AGSGCTPDVVVYSSIIHAFCKSGKLLEAQKTLQEMRKQRKSPDVVT---YNTVIDGLCKL 402
Query: 422 GRMGECNKILKAMEEGGFIASSNMK-SKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKM 480
G++ E IL+ M+E G + + S + L + EA + +D M +G +
Sbjct: 403 GKIAEAQVILEQMQESGDVLPDVVTYSTVINGLCKSDMLVEAQKLLDRMCKAGCNPDVVT 462
Query: 481 WVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNC 540
+ ++I G C G L++A Q M ++ G + L++ C K R +D + V
Sbjct: 463 YTTIIDGLCKCGRLEEAEYLLQGM-KRAGCAPNVVTYTTLISGLC-KARKVDEAERVMEE 520
Query: 541 VREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKD 578
+R P TY ++ L V K+A L+ MKD
Sbjct: 521 MRNAGCPPNLVTYNTMVNGLCVSGRIKEAQQLVQRMKD 558
Score = 53.5 bits (127), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 70/302 (23%), Positives = 124/302 (41%), Gaps = 45/302 (14%)
Query: 269 LVKFVVDKLGDEPKKALIFFRWAEES--GFVKHDESSYNAMASVLGR----EDCIDRF-- 320
+V VV+ L D K AL FFRWA S GF H S+N++ VL R + D F
Sbjct: 45 IVGRVVNSLKDA-KLALAFFRWAPASIPGF-SHTAFSWNSLLQVLVRCKKHREAGDLFRS 102
Query: 321 -----------------------------WKVLDEMRSKGYEMEMETCVKVLGRFSERNM 351
++L+EM+S G+ + T ++ +
Sbjct: 103 ELLASCEPDVCSYNIVISGFCNAGDLHAALELLEEMKSAGFAPDAFTHTPIITAMANAGD 162
Query: 352 VKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAML 411
+ A+D + +M C P+V T L+ +K+L+ + K++ RE G
Sbjct: 163 LDGAMD-HLRSMGCD--PNVVTYTALIAAFARAKKLEEAM--KLLEEMRERGCPPNLVTY 217
Query: 412 NSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEA 471
N ++ AL + +G ++K M EGGF + + + G D+A + + M A
Sbjct: 218 NVLVDALCKLSMVGAAQDVVKKMIEGGFAPNVMTFNSLVDGFCKRGNVDDARKLLGIMVA 277
Query: 472 SGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAI 531
G + +LI G C + +A + ++M + G + + L++ C ++
Sbjct: 278 KGMRPNVVTYSALIDGLCKSQKFLEAKEVLEEM-KTRGVTPDAFTYSALIHGLCKADKIE 336
Query: 532 DA 533
+A
Sbjct: 337 EA 338
Score = 48.9 bits (115), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 71/346 (20%), Positives = 141/346 (40%), Gaps = 12/346 (3%)
Query: 166 TYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRNKMTEKFEKEGLESDLEKLKGIF 225
TYN+++ + +V +V M + G+ N + + F K G D KL GI
Sbjct: 216 TYNVLVDALCKLSMVGAAQDVVKKMIEGGFAPNVMTFNSLVDGFCKRGNVDDARKLLGIM 275
Query: 226 ATGSIDNSIEKVASRICKVVRSD--IWGDDVERQLRDLNVTFSNDLVKFVVDKL--GDEP 281
+ ++ ++ I + +S + +V +++ VT ++ L D+
Sbjct: 276 VAKGMRPNVVTYSALIDGLCKSQKFLEAKEVLEEMKTRGVTPDAFTYSALIHGLCKADKI 335
Query: 282 KKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVK 341
++A R SG D Y+++ + + K L EMR + ++ T
Sbjct: 336 EEAEQMLRRMAGSGCTP-DVVVYSSIIHAFCKSGKLLEAQKTLQEMRKQRKSPDVVTYNT 394
Query: 342 VLGRFSERNMVKEA-VDLYEFAMACKNKPSVNCCTFLLRKIVVSKQL--DMRLFSKVVRV 398
V+ + + EA V L + + P V + ++ + S L +L ++ +
Sbjct: 395 VIDGLCKLGKIAEAQVILEQMQESGDVLPDVVTYSTVINGLCKSDMLVEAQKLLDRMCKA 454
Query: 399 FRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGK 458
N +V+T +++ L GR+ E +L+ M+ G + + + L A K
Sbjct: 455 GC-NPDVVT---YTTIIDGLCKCGRLEEAEYLLQGMKRAGCAPNVVTYTTLISGLCKARK 510
Query: 459 KDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKM 504
DEA M+ M +G + +++ G CV+G + +A Q+M
Sbjct: 511 VDEAERVMEEMRNAGCPPNLVTYNTMVNGLCVSGRIKEAQQLVQRM 556
Score = 45.8 bits (107), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 73/344 (21%), Positives = 132/344 (38%), Gaps = 9/344 (2%)
Query: 303 SYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFA 362
+YN + L + + V+ +M G+ + T ++ F +R V +A L
Sbjct: 216 TYNVLVDALCKLSMVGAAQDVVKKMIEGGFAPNVMTFNSLVDGFCKRGNVDDARKLLGIM 275
Query: 363 MACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVL-KALISV 421
+A +P+V + L+ + S++ L +K V + V DA S L L
Sbjct: 276 VAKGMRPNVVTYSALIDGLCKSQKF---LEAKEVLEEMKTRGVTPDAFTYSALIHGLCKA 332
Query: 422 GRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMW 481
++ E ++L+ M G + S I +GK EA + + M +
Sbjct: 333 DKIEEAEQMLRRMAGSGCTPDVVVYSSIIHAFCKSGKLLEAQKTLQEMRKQRKSPDVVTY 392
Query: 482 VSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCV 541
++I G C G + +A ++M E ++N C + ++A K +
Sbjct: 393 NTVIDGLCKLGKIAEAQVILEQMQESGDVLPDVVTYSTVINGLCKSDMLVEAQKLLDRMC 452
Query: 542 REYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPFIKYVS---KSGTS 598
+ P TY +I L ++A LL MK G P V + +S K+
Sbjct: 453 KA-GCNPDVVTYTTIIDGLCKCGRLEEAEYLLQGMKRAGCAPNVVTYTTLISGLCKARKV 511
Query: 599 DDAIAFLKGMTSKRFPSMSVVL-CLFAAFFQARRHSEAQDLLSK 641
D+A ++ M + P V + + R EAQ L+ +
Sbjct: 512 DEAERVMEEMRNAGCPPNLVTYNTMVNGLCVSGRIKEAQQLVQR 555
>gi|255557939|ref|XP_002519998.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223540762|gb|EEF42322.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 498
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 70/261 (26%), Positives = 114/261 (43%), Gaps = 39/261 (14%)
Query: 386 QLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNM 445
QL+ ++SKV+ ++R+NG + K I I++ + E G ++
Sbjct: 158 QLNSFVYSKVIGLYRDNG----------MWKKAIG---------IIEEIREMGMPLDKHI 198
Query: 446 KSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMV 505
+ I G+ DEA E + +M+ G W SLI+ HC AG+L KA + F KM
Sbjct: 199 YNSIIDTFGKYGELDEALEVLSNMQQQGITPDIVTWNSLIRWHCKAGNLSKALELFSKM- 257
Query: 506 EKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVRE-YD-LKPWHTTYEELIKNLLV- 562
+ Y ++ T S R + K+ N +RE +D +K W I +LV
Sbjct: 258 ----QAQGLYPDPKILVTIIS--RLAEQGKW--NIIRENFDIMKSWGYKKSGAIYAILVD 309
Query: 563 ---QRG-FKDALSLLCLMKDHGFPPFVDPFIKYV---SKSGTSDDAIAFLKGMTSKRF-P 614
Q G F+DA + +K G P F ++ G + + L+ M ++ P
Sbjct: 310 IYGQYGRFQDAEECISALKSEGILPSASMFCVLANAYAQQGLCEQTVKVLQLMEAEGIEP 369
Query: 615 SMSVVLCLFAAFFQARRHSEA 635
++ ++ L AF A RH EA
Sbjct: 370 NLIMLNVLINAFGIAGRHREA 390
Score = 52.4 bits (124), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 64/326 (19%), Positives = 126/326 (38%), Gaps = 45/326 (13%)
Query: 321 WKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRK 380
W V++EM+ KG+++ KV+G + + M K+A+
Sbjct: 146 WSVINEMKQKGFQLNSFVYSKVIGLYRDNGMWKKAIG----------------------- 182
Query: 381 IVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFI 440
++ RE G L + NS++ G + E ++L M++ G
Sbjct: 183 --------------IIEEIREMGMPLDKHIYNSIIDTFGKYGELDEALEVLSNMQQQGIT 228
Query: 441 ASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADC 500
+ + AG +A E M+A G K+ V++I G + +
Sbjct: 229 PDIVTWNSLIRWHCKAGNLSKALELFSKMQAQGLYPDPKILVTIISRLAEQGKWNIIREN 288
Query: 501 FQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNL 560
F M + G +G +LV+ Y R DA + + + ++ + P + + ++ N
Sbjct: 289 FDIM-KSWGYKKSGAIYAILVDIYGQYGRFQDAEECI-SALKSEGILPSASMF-CVLANA 345
Query: 561 LVQRGF-KDALSLLCLMKDHGFPP---FVDPFIKYVSKSGTSDDAIAFLKGMTSKRF-PS 615
Q+G + + +L LM+ G P ++ I +G +A++ M P
Sbjct: 346 YAQQGLCEQTVKVLQLMEAEGIEPNLIMLNVLINAFGIAGRHREALSIYHHMKESGISPD 405
Query: 616 MSVVLCLFAAFFQARRHSEAQDLLSK 641
+ L A+ +AR+ E ++ S+
Sbjct: 406 VVTYSTLMKAYIRARKFDEVPEIYSE 431
Score = 42.4 bits (98), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 57/347 (16%), Positives = 142/347 (40%), Gaps = 44/347 (12%)
Query: 163 SSKTYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRNKMTEKFEKEGLESDLEKLK 222
+ +TY ++L G +++ W +++ MK+KG+ + S V +K+ + G+ +K
Sbjct: 125 NQETYEILLDYNVNAGRLEDTWSVINEMKQKGFQLNSFVYSKVIGLYRDNGM---WKKAI 181
Query: 223 GIFATGSIDNSIEKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLG--DE 280
GI ++R++ + + ++D G E
Sbjct: 182 GII------------------------------EEIREMGMPLDKHIYNSIIDTFGKYGE 211
Query: 281 PKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCV 340
+AL ++ G + D ++N++ + + + ++ +M+++G + + V
Sbjct: 212 LDEALEVLSNMQQQG-ITPDIVTWNSLIRWHCKAGNLSKALELFSKMQAQGLYPDPKILV 270
Query: 341 KVLGRFSER---NMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVR 397
++ R +E+ N+++E D+ + + K ++ + + + + + + +
Sbjct: 271 TIISRLAEQGKWNIIRENFDIMK-SWGYKKSGAI----YAILVDIYGQYGRFQDAEECIS 325
Query: 398 VFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAG 457
+ G + + +M + A G + K+L+ ME G + M + + AG
Sbjct: 326 ALKSEGILPSASMFCVLANAYAQQGLCEQTVKVLQLMEAEGIEPNLIMLNVLINAFGIAG 385
Query: 458 KKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKM 504
+ EA HM+ SG + +L+K + A D+ + + +M
Sbjct: 386 RHREALSIYHHMKESGISPDVVTYSTLMKAYIRARKFDEVPEIYSEM 432
>gi|449462136|ref|XP_004148797.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g48810-like [Cucumis sativus]
Length = 660
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 76/347 (21%), Positives = 139/347 (40%), Gaps = 15/347 (4%)
Query: 285 LIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLG 344
L FF S +H S+Y M LGRE +D +L +M+ G + + ++
Sbjct: 58 LGFFSAIANSNAFQHTASTYRVMIERLGRECEMDMVQYILQQMKMDGINCCEDLFICIIN 117
Query: 345 RFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGN 404
+ ++A+ ++ KP+V LL ++ + M + + +++G
Sbjct: 118 GYKRVGSAEQALKMFYRIGEFGCKPTVRIYNHLLDALLSENKFQM--INPLYTNMKKDGL 175
Query: 405 VLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANE 464
+ N +LKAL R+ +K+ M G + + + L AGK D+A E
Sbjct: 176 IPNVFTYNILLKALCKNDRVDAAHKLFVEMSNKGCPPDAVTYTTMVSSLCKAGKIDDARE 235
Query: 465 FMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTY 524
+ S ++ +LI G C G ++ A +M++ G + ++N+
Sbjct: 236 LAGRFKPS-----VPVYNALIDGMCKEGRIEVAIKLLGEMMDN-GVDPNVVSYSCIINSL 289
Query: 525 C-SKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPP 583
C S N + F +R D T+ LIK ++ +AL L LM G P
Sbjct: 290 CVSGNVELAFALFAQMFLRGCDANI--HTFTPLIKGCFMRGKLYEALDLWKLMIQDGCEP 347
Query: 584 FV---DPFIKYVSKSGTSDDAIAFLKGMT-SKRFPSMSVVLCLFAAF 626
V + I + +G+ ++A+ M S P+++ L F
Sbjct: 348 NVVAYNTLIHGLCSNGSLEEALQVCDQMQRSGCLPNVTTYSILIDGF 394
Score = 48.5 bits (114), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 104/493 (21%), Positives = 195/493 (39%), Gaps = 42/493 (8%)
Query: 110 KFSDVNDISKQLELSGV---VFTHEMVLKVL-KNLESSPDEARRFFNWVLEKESERLSSK 165
KF +N + ++ G+ VFT+ ++LK L KN D A + F + K +
Sbjct: 159 KFQMINPLYTNMKKDGLIPNVFTYNILLKALCKN--DRVDAAHKLFVEMSNKGCPP-DAV 215
Query: 166 TYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRNKMTEKFEKEGLESDLEKLKGIF 225
TY M+ + G + + L K + V N + + KEG KL G
Sbjct: 216 TYTTMVSSLCKAGKIDDARELAGRFKP-----SVPVYNALIDGMCKEGRIEVAIKLLGEM 270
Query: 226 ATGSIDNSIEKVASRICKVVRSDIWGDDVERQ--------LR--DLNVTFSNDLVK--FV 273
+D V S C ++ S +VE LR D N+ L+K F+
Sbjct: 271 MDNGVD---PNVVSYSC-IINSLCVSGNVELAFALFAQMFLRGCDANIHTFTPLIKGCFM 326
Query: 274 VDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYE 333
KL +AL ++ + G + + +YN + L ++ +V D+M+ G
Sbjct: 327 RGKL----YEALDLWKLMIQDG-CEPNVVAYNTLIHGLCSNGSLEEALQVCDQMQRSGCL 381
Query: 334 MEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFS 393
+ T ++ F++ + A + + ++ +P+V T ++ + + D +
Sbjct: 382 PNVTTYSILIDGFAKSGDLVGASETWNRMISHGCRPNVVTYTCMVDVLCKNSMFDQA--N 439
Query: 394 KVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRL 453
+V G N+ +K L GR+ K+L+ M+ G + + +++ L
Sbjct: 440 SLVEKMTLEGCTPNTMTFNTFIKGLCGNGRVEWAMKLLERMQGHGCLPNITTYNELLDAL 499
Query: 454 SSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHA 513
K +EA +EA + +++ G AG + +A F K + + GT+
Sbjct: 500 FRMNKYEEAFGLFQEIEARNLQPNLVTYNTVLYGFSRAGMMGEALQLFGKALVR-GTAPD 558
Query: 514 GYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWH---TTYEELIKNLLVQRGFKDAL 570
+ +++ YC + + A + V R +K WH TY LI ++A+
Sbjct: 559 SITYNTMIHAYCKQGKVKIAAQLVE---RVSSMKEWHPDIITYTSLIWGACNWMNIEEAM 615
Query: 571 SLLCLMKDHGFPP 583
+ L + G P
Sbjct: 616 AFLDKAINQGICP 628
Score = 45.1 bits (105), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 74/376 (19%), Positives = 143/376 (38%), Gaps = 44/376 (11%)
Query: 303 SYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFA 362
+YN + L + D +D K+ EM +KG + T ++ + + +A +L
Sbjct: 181 TYNILLKALCKNDRVDAAHKLFVEMSNKGCPPDAVTYTTMVSSLCKAGKIDDAREL---- 236
Query: 363 MACKNKPSVNCCTFLLRKIVVSKQLDMRL-----------------FSKVVRVFRENGNV 405
A + KPSV L+ + ++++ + +S ++ +GNV
Sbjct: 237 -AGRFKPSVPVYNALIDGMCKEGRIEVAIKLLGEMMDNGVDPNVVSYSCIINSLCVSGNV 295
Query: 406 L-------------TDAMLNS---VLKALISVGRMGECNKILKAMEEGGFIASSNMKSKI 449
DA +++ ++K G++ E + K M + G + + +
Sbjct: 296 ELAFALFAQMFLRGCDANIHTFTPLIKGCFMRGKLYEALDLWKLMIQDGCEPNVVAYNTL 355
Query: 450 AFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEG 509
L S G +EA + D M+ SG + LI G +GDL A++ + +M+ G
Sbjct: 356 IHGLCSNGSLEEALQVCDQMQRSGCLPNVTTYSILIDGFAKSGDLVGASETWNRMIS-HG 414
Query: 510 TSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDA 569
+V+ C + A V E P T+ IK L + A
Sbjct: 415 CRPNVVTYTCMVDVLCKNSMFDQANSLVEKMTLE-GCTPNTMTFNTFIKGLCGNGRVEWA 473
Query: 570 LSLLCLMKDHGFPPFVDPF---IKYVSKSGTSDDAIAFLKGMTSKRF-PSMSVVLCLFAA 625
+ LL M+ HG P + + + + + ++A + + ++ P++ +
Sbjct: 474 MKLLERMQGHGCLPNITTYNELLDALFRMNKYEEAFGLFQEIEARNLQPNLVTYNTVLYG 533
Query: 626 FFQARRHSEAQDLLSK 641
F +A EA L K
Sbjct: 534 FSRAGMMGEALQLFGK 549
>gi|41152688|dbj|BAD08213.1| hypothetical protein [Oryza sativa Indica Group]
Length = 762
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 80/366 (21%), Positives = 144/366 (39%), Gaps = 48/366 (13%)
Query: 279 DEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMET 338
++PK+A+ F + G V+ D +YN++ L + K+ D M +G E ++ T
Sbjct: 280 EQPKEAIGFLKKMRSDG-VEPDVVTYNSLMDYLCKNGRSTEARKIFDSMTKRGLEPDIAT 338
Query: 339 CVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLD--MRLFSKVV 396
+L ++ + + E L + + P + L+ +++D M +FSK +
Sbjct: 339 YCTLLQGYATKGALVEMHALLDLMVRNGIHPDHHVFNILICAYAKQEKVDEAMLVFSK-M 397
Query: 397 RVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSA 456
R N NV+T A+I + L +
Sbjct: 398 RQHGLNPNVVT-------YGAVIGI-------------------------------LCKS 419
Query: 457 GKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYA 516
G D+A + + M G ++ SLI C+ DKA + +M+++ G
Sbjct: 420 GSVDDAMLYFEQMIDEGLTPNIIVYTSLIHSLCIFDKWDKAEELILEMLDR-GICLNTIF 478
Query: 517 IDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLM 576
+ +++++C + R I++ K VR +KP TY LI + +A LL M
Sbjct: 479 FNSIIHSHCKEGRVIESEKLFDLMVR-IGVKPNVITYSTLIDGYCLAGKMDEATKLLSSM 537
Query: 577 KDHGFPP---FVDPFIKYVSKSGTSDDAIAFLKGMTSKRF-PSMSVVLCLFAAFFQARRH 632
G P + I + DDA+A K M S P++ + F RR
Sbjct: 538 FSVGMKPDCVTYNTLINGYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLFHTRRT 597
Query: 633 SEAQDL 638
+ A++L
Sbjct: 598 AAAKEL 603
Score = 45.8 bits (107), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 51/222 (22%), Positives = 89/222 (40%), Gaps = 12/222 (5%)
Query: 412 NSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEA 471
+S++ AL M + ++L M + G + + + I S+ + EA F+ M +
Sbjct: 235 SSIIAALCKGQAMDKAMEVLTTMVKNGVMPNCMTYNSILHGYCSSEQPKEAIGFLKKMRS 294
Query: 472 SGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAI 531
G + + SL+ C G +A F M K G L+ Y +K +
Sbjct: 295 DGVEPDVVTYNSLMDYLCKNGRSTEARKIFDSMT-KRGLEPDIATYCTLLQGYATKGALV 353
Query: 532 DACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPF--- 588
+ + VR + P H + LI Q +A+ + M+ HG P V +
Sbjct: 354 EMHALLDLMVRN-GIHPDHHVFNILICAYAKQEKVDEAMLVFSKMRQHGLNPNVVTYGAV 412
Query: 589 IKYVSKSGTSDDAIAFLKGMTSKRFPSMSVV-------LCLF 623
I + KSG+ DDA+ + + M + +V LC+F
Sbjct: 413 IGILCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHSLCIF 454
>gi|225459022|ref|XP_002285611.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09900-like isoform 1 [Vitis vinifera]
Length = 610
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 80/352 (22%), Positives = 144/352 (40%), Gaps = 13/352 (3%)
Query: 300 DESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLY 359
D +Y + +E + + K+LDEMR+KG + ++ T ++ + + EA+
Sbjct: 250 DVITYTILIEATCKESGVGQAMKLLDEMRNKGSKPDVVTYNVLINGICKEGRLDEAIKFL 309
Query: 360 EFAMACKNKPSVNCCTFLLRKIV-VSKQLDM-RLFSKVVRVFRENGNVLTDAMLNSVLKA 417
+ +P+V +LR + + +D +L S ++R G + N ++
Sbjct: 310 NNMPSYGCQPNVITHNIILRSMCSTGRWMDAEKLLSDMLR----KGCSPSVVTFNILINF 365
Query: 418 LISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVG 477
L G +G IL+ M G +S + + K D A E++D M + G
Sbjct: 366 LCRQGLLGRAIDILEKMPMHGCTPNSLSYNPLLHGFCKEKKMDRAIEYLDIMVSRGCYPD 425
Query: 478 DKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFV 537
+ +L+ C G +D A + ++ K G S + +++ + A K +
Sbjct: 426 IVTYNTLLTALCKDGKVDVAVEILNQLSSK-GCSPVLITYNTVIDGLSKVGKTERAIKLL 484
Query: 538 HNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFV---DPFIKYVSK 594
+R LKP TY L+ L + +A+ ++ G P + + + K
Sbjct: 485 DE-MRRKGLKPDIITYSSLVSGLSREGKVDEAIKFFHDLEGLGIRPNAITYNSIMLGLCK 543
Query: 595 SGTSDDAIAFLKGMTSKRF-PSMSVVLCLFAAFFQARRHSEAQDLLSK-CPR 644
S +D AI FL M SKR P+ + L EA DLL++ C R
Sbjct: 544 SRQTDRAIDFLAYMISKRCKPTEATYTILIEGIAYEGLAKEALDLLNELCSR 595
Score = 48.5 bits (114), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 76/351 (21%), Positives = 139/351 (39%), Gaps = 14/351 (3%)
Query: 297 VKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAV 356
V D +YN + L + + +VLD K ++ T ++ + + V +A+
Sbjct: 212 VAPDVVTYNTILRTLCDSGKLKQAMEVLDRQLQKECYPDVITYTILIEATCKESGVGQAM 271
Query: 357 DLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRL-FSKVVRVFRENGNVLTDAMLNSVL 415
L + +KP V L+ I +LD + F + + NV+T N +L
Sbjct: 272 KLLDEMRNKGSKPDVVTYNVLINGICKEGRLDEAIKFLNNMPSYGCQPNVITH---NIIL 328
Query: 416 KALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSD 475
+++ S GR + K+L M G S + + L G A + ++ M G
Sbjct: 329 RSMCSTGRWMDAEKLLSDMLRKGCSPSVVTFNILINFLCRQGLLGRAIDILEKMPMHGCT 388
Query: 476 VGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACK 535
+ L+ G C +D+A + MV + G + L+ C K+ +D
Sbjct: 389 PNSLSYNPLLHGFCKEKKMDRAIEYLDIMVSR-GCYPDIVTYNTLLTALC-KDGKVDVAV 446
Query: 536 FVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPF---IKYV 592
+ N + P TY +I L + A+ LL M+ G P + + + +
Sbjct: 447 EILNQLSSKGCSPVLITYNTVIDGLSKVGKTERAIKLLDEMRRKGLKPDIITYSSLVSGL 506
Query: 593 SKSGTSDDAIAF---LKGMTSKRFPSMSVVLCLFAAFFQARRHSEAQDLLS 640
S+ G D+AI F L+G+ + P+ + ++R+ A D L+
Sbjct: 507 SREGKVDEAIKFFHDLEGLGIR--PNAITYNSIMLGLCKSRQTDRAIDFLA 555
>gi|297832318|ref|XP_002884041.1| binding protein [Arabidopsis lyrata subsp. lyrata]
gi|297329881|gb|EFH60300.1| binding protein [Arabidopsis lyrata subsp. lyrata]
Length = 874
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 124/569 (21%), Positives = 229/569 (40%), Gaps = 67/569 (11%)
Query: 119 KQLELSGV---VFTHEMVLKVLKNLESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVG 175
K + L G+ +T ++++ L + S D AR F+ + EK + + T+ +++R
Sbjct: 136 KDMVLCGISPETYTFNLLIRALCD-SSCVDAARELFDEMPEKGC-KPNEFTFGILVRGYC 193
Query: 176 VHGLVQEFWGLVDVMKKKGYGVASHVRNKMTEKFEKEGLESDLEKLKGIFATGSIDNSIE 235
GL + L++ M+ G V N + F +EG D EKL + I
Sbjct: 194 KAGLTDKGLELLNSMESFGVLPNKVVYNTIVSSFCREGRNDDSEKLVEKMREEGLVPDIV 253
Query: 236 KVASRICKVVR-----------SDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKA 284
SRI + + SD+ D+ R ++T++ L F K+G
Sbjct: 254 TFNSRISALCKEGKVLDASRIFSDMELDEYLGLPRPNSITYNLMLKGFC--KVGLLEDAK 311
Query: 285 LIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLG 344
+F E V SYN L R VL +M KG + + ++
Sbjct: 312 TLFESIRENDDLVSL--QSYNIWLQGLVRHGKFIEAETVLKQMIDKGIGPSIYSYNILMD 369
Query: 345 RFSERNMVKEAVDLYEFAMACKNKPSVNCCTF--LLRKIVVSKQLDM--RLFSKVVRVFR 400
+ M+ +A + + +N S + T+ LL ++D L +++R
Sbjct: 370 GLCKLGMLSDAKTI--VGLMKRNGVSPDAVTYGCLLHGYCSVGKVDAAKSLLQEMMR--- 424
Query: 401 ENGNVLTDA-MLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKK 459
N L +A N +L +L ++GR+ E ++L+ M E G+ + + I L +G+
Sbjct: 425 --NNCLPNAYTCNILLHSLWNMGRISEAEELLRKMNEKGYGLDTVTCNIIVDGLCGSGEL 482
Query: 460 DEANEFMDHMEASGS----DVGDK-------------------MWVSLIKGHCVAGDLDK 496
D+A E + M GS ++G+ + +L+ G C AG +
Sbjct: 483 DKAIEIVKGMRVHGSAALGNLGNSYIGLVDDSLIENNCLPDLITYSTLLNGLCKAGRFAE 542
Query: 497 AADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHT---TY 553
A F +M+ E A ++ ++ +C + + A + +++ + K H TY
Sbjct: 543 AKTLFAEMM-GEKLQPDSLAYNIFIHHFCKQGKISSAFRV----LKDMEKKGCHKSLETY 597
Query: 554 EELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPF---IKYVSKSGTSDDAIAFLKGMTS 610
LI L ++ + L+ M++ G P + + I+Y+ + G +DA L M
Sbjct: 598 NSLILGLGIKNQIFEIHGLMDEMREKGISPNICTYNTAIQYLCEGGKVEDATNLLDEMMQ 657
Query: 611 KRF-PSMSVVLCLFAAFFQARRHSEAQDL 638
K P++ L AF + AQ++
Sbjct: 658 KNIAPNVFSFKYLIGAFCKVPDFDMAQEV 686
Score = 44.3 bits (103), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 76/358 (21%), Positives = 146/358 (40%), Gaps = 26/358 (7%)
Query: 293 ESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMV 352
ES V ++ YN + S RE D K++++MR +G ++ T + + V
Sbjct: 209 ESFGVLPNKVVYNTIVSSFCREGRNDDSEKLVEKMREEGLVPDIVTFNSRISALCKEGKV 268
Query: 353 KEA------VDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVL 406
+A ++L E+ P N T+ L K + + REN +++
Sbjct: 269 LDASRIFSDMELDEYL----GLPRPNSITYNLMLKGFCKVGLLEDAKTLFESIRENDDLV 324
Query: 407 TDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFM 466
+ N L+ L+ G+ E +LK M + G S + + L G +A +
Sbjct: 325 SLQSYNIWLQGLVRHGKFIEAETVLKQMIDKGIGPSIYSYNILMDGLCKLGMLSDAKTIV 384
Query: 467 DHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCS 526
M+ +G + L+ G+C G +D A Q+M+ +A Y ++L+++ +
Sbjct: 385 GLMKRNGVSPDAVTYGCLLHGYCSVGKVDAAKSLLQEMMRNNCLPNA-YTCNILLHSLWN 443
Query: 527 KNRAIDACKFVHNCVREYDLKPW--HTTYEELIKNLLVQRGFKD-ALSLLCLMKDHGFPP 583
R +A +R+ + K + T +I + L G D A+ ++ M+ HG
Sbjct: 444 MGRISEA----EELLRKMNEKGYGLDTVTCNIIVDGLCGSGELDKAIEIVKGMRVHGSAA 499
Query: 584 FVDPFIKYVSKSGTSDDAIAFLKGMTSKRFPSMSVVLCLFAAFFQARRHSEAQDLLSK 641
+ Y+ G DD++ + + P + L +A R +EA+ L ++
Sbjct: 500 LGNLGNSYI---GLVDDSL-----IENNCLPDLITYSTLLNGLCKAGRFAEAKTLFAE 549
Score = 41.6 bits (96), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 75/385 (19%), Positives = 157/385 (40%), Gaps = 41/385 (10%)
Query: 166 TYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRNKMTEKFEKEG-LESDLEKLKGI 224
T N++L + G + E L+ M +KGYG+ + N + + G L+ +E +KG+
Sbjct: 433 TCNILLHSLWNMGRISEAEELLRKMNEKGYGLDTVTCNIIVDGLCGSGELDKAIEIVKGM 492
Query: 225 FATGS-------------IDNSI------------EKVASRICKVVR----SDIWGDDVE 255
GS +D+S+ + + +CK R ++ + +
Sbjct: 493 RVHGSAALGNLGNSYIGLVDDSLIENNCLPDLITYSTLLNGLCKAGRFAEAKTLFAEMMG 552
Query: 256 RQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGRED 315
+L+ ++ ++ + F K G + A + E+ G K E+ YN++ LG ++
Sbjct: 553 EKLQPDSLAYNIFIHHFC--KQG-KISSAFRVLKDMEKKGCHKSLET-YNSLILGLGIKN 608
Query: 316 CIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCT 375
I ++DEMR KG + T + E V++A +L + M P+V
Sbjct: 609 QIFEIHGLMDEMREKGISPNICTYNTAIQYLCEGGKVEDATNLLDEMMQKNIAPNVFSFK 668
Query: 376 FLLRKIVVSKQLDM--RLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKA 433
+L+ DM +F V + + + + + + L++ G++ + ++L+A
Sbjct: 669 YLIGAFCKVPDFDMAQEVFETAVSICGQK-----EGLYSLMFNELLAAGQLLKATELLEA 723
Query: 434 MEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGD 493
+ + GF + + + L + + A+ + M G + +I G G+
Sbjct: 724 VLDRGFELGTFLYKDLVVSLCKKDELEVASGILHKMIDKGYGFDPAALMPVIDGLGKMGN 783
Query: 494 LDKAADCFQKMVEKEGTSHAGYAID 518
+A + +KM+E +D
Sbjct: 784 KKEANNFAEKMMEMASVGEVANKVD 808
>gi|168063537|ref|XP_001783727.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162664733|gb|EDQ51441.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 445
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 71/327 (21%), Positives = 133/327 (40%), Gaps = 13/327 (3%)
Query: 326 EMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLY-EFAMACKNKPSVNCCTFLLRKIVVS 384
EM+ +G + + ++ + +EA+ L E A +KP+ L++
Sbjct: 85 EMKERGCPLITSSYNTLIKGYGLDGQPEEAMKLLQEMAKDVNSKPNDRTFNMLIKAWAHD 144
Query: 385 KQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSN 444
K + V+ + R G N++ + +G+ + ++ M+ +
Sbjct: 145 KNPEKA--RNVISMMRAAGVGPDVVSYNTLAQLFAKLGKPWDAENVITEMQNVYLRPNER 202
Query: 445 MKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKM 504
+ +AG+ DE+ ++ M+ G ++ L+KG+ + K F K+
Sbjct: 203 TYGIVINGYIAAGQIDESLRLIERMKMDGISPTIAVFNHLVKGYSESMKPHKVDKVF-KL 261
Query: 505 VEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQR 564
+E G L++N +CS ID K V ++EYDL+P Y L+K Q
Sbjct: 262 MENFGVKPDVQTFGLIMNAWCSTG-LIDEAKAVLLRMKEYDLQPDVMAYSILVKGYSRQG 320
Query: 565 GFKDALSLLCLMKDHGFPPFVDPFIKYVSKS---GTSDDAIAFLKGMTSKR-FPSMSVVL 620
++ + L +M D P V + +S DDA+ + M S+ FP+M
Sbjct: 321 RPEEGEAFLNIMIDENLKPNVITYTTVISGYCSLAQMDDAMRVFQEMRSRSVFPNMQTFR 380
Query: 621 CLFAAFFQARRHSEAQDLLSKCPRYVR 647
L F +AR A+++L Y+R
Sbjct: 381 TLIWGFKEARWPRRAEEILE----YIR 403
Score = 48.9 bits (115), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 38/171 (22%), Positives = 76/171 (44%), Gaps = 1/171 (0%)
Query: 388 DMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKS 447
D R ++ R +G+ +L +LIS GR+GE +L+ MEE I + +
Sbjct: 5 DHRQVRSTLKNLRRDGHRPAKETYTLLLSSLISDGRLGEGPLLLQQMEEDNVIPDAIFFN 64
Query: 448 KIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEK 507
+ AGK EA + M+ G + + +LIKG+ + G ++A Q+M +
Sbjct: 65 TLLNGYCEAGKMKEAEALVLEMKERGCPLITSSYNTLIKGYGLDGQPEEAMKLLQEMAKD 124
Query: 508 EGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIK 558
+ ++L+ + + ++ + + V + +R + P +Y L +
Sbjct: 125 VNSKPNDRTFNMLIKAW-AHDKNPEKARNVISMMRAAGVGPDVVSYNTLAQ 174
>gi|357129487|ref|XP_003566393.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g08310, mitochondrial-like [Brachypodium distachyon]
Length = 837
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 68/257 (26%), Positives = 112/257 (43%), Gaps = 20/257 (7%)
Query: 257 QLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDC 316
+LR L+ + V+ V+ +L + AL FF+WA+E +H ++NAMAS+L R
Sbjct: 61 RLRRLSAHLTAPAVESVLVRL-PSWRHALDFFQWADEQPGFRHSCYTFNAMASLLPRHQA 119
Query: 317 IDRFWKVLDEMR-----SKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMAC----KN 367
D + + G + C+ G + A+ +++ A C N
Sbjct: 120 AHLDRLAADALAACCPMTPGALGFLLRCLGAAG------LPDAALLVFDGARTCLSCTPN 173
Query: 368 KPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGEC 427
+ NC L K + + RL VVR E+ + T L S+L+ + GR +
Sbjct: 174 SYTFNCLLDTLAKAGRADDAEARLQEMVVRCGDESVDKYT---LTSLLQCYCNAGRPDDA 230
Query: 428 NKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKG 487
N + + M + G++ ++ + +A S GK D A E + ME G +K L+ G
Sbjct: 231 NGVFERMSQRGWV-DEHVLTILAVAFSKWGKVDGAVELLGRMELLGMRPSEKTLSVLVHG 289
Query: 488 HCVAGDLDKAADCFQKM 504
LDKA + F KM
Sbjct: 290 FAKQLRLDKAMEMFDKM 306
Score = 44.7 bits (104), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 75/398 (18%), Positives = 157/398 (39%), Gaps = 49/398 (12%)
Query: 284 ALIFFRWAEESGFV-----------KHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGY 332
A+ F +W + G V + E + + + ++ +D+ ++ D+M S G+
Sbjct: 252 AVAFSKWGKVDGAVELLGRMELLGMRPSEKTLSVLVHGFAKQLRLDKAMEMFDKMGSYGF 311
Query: 333 EMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVS--KQLDMR 390
+ ++ ++ + +AV L+E + P LL+K++ + ++ D
Sbjct: 312 VAGLPMYSVLIEGLCQKKEIGKAVKLFEEMKRGEVAPDAR----LLKKMLEAFCREGDFA 367
Query: 391 L----FSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMK 446
+ ++ R + +G + A+ N VL+ ++ G+ ++L +M GG S +
Sbjct: 368 IAGLFINENARQLKPSGVI---ALFNVVLEGFVNHGQAEAAYQLLTSMIRGGQGISDGVT 424
Query: 447 -------------------SKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKG 487
+ + L K D A + M G M+ LI
Sbjct: 425 VGAHVVDISEDVKPNSDSFNIVVCGLCKVKKLDNALALIKDMTGIGCKGKLLMFNDLIHE 484
Query: 488 HCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLK 547
C LD+ F M + G + + + L C + A + + +R +
Sbjct: 485 LCSLDRLDEGYKMFNLM-KNLGLIPSEFTYNSLFYGICRRKDPNCALDLLRD-MRTNGHR 542
Query: 548 PWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPF---IKYVSKSGTSDDAIAF 604
PW E+++ L + +AL L M GF P + + + + K+G D+A+
Sbjct: 543 PWIKNCTEMVQQLCISGRITEALQFLDEMLKMGFLPDIVTYSAAMNGLCKTGEVDNALGI 602
Query: 605 LKGMTSKRF-PSMSVVLCLFAAFFQARRHSEAQDLLSK 641
+ ++SK + P + L F + + SEAQ+++ +
Sbjct: 603 FRDISSKYYLPDVVAHNILINGFRISGKLSEAQEVMEE 640
Score = 40.8 bits (94), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 64/317 (20%), Positives = 126/317 (39%), Gaps = 19/317 (5%)
Query: 304 YNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAM 363
+N + L D +D +K+ + M++ G T + R A+DL
Sbjct: 478 FNDLIHELCSLDRLDEGYKMFNLMKNLGLIPSEFTYNSLFYGICRRKDPNCALDLLRDMR 537
Query: 364 ACKNKPSVNCCTFLLRKIVVSKQLD--MRLFSKVVRVFRENGNVLTDAMLNSVLKALISV 421
++P + CT +++++ +S ++ ++ +++++ V A +N + K
Sbjct: 538 TNGHRPWIKNCTEMVQQLCISGRITEALQFLDEMLKMGFLPDIVTYSAAMNGLCK----T 593
Query: 422 GRMGECNKILKAMEEGGFIASSNMKSKI--AFRLSSAGKKDEANEFMDHMEASGSDVGDK 479
G + I + + ++ + + FR+S GK EA E M+ M G
Sbjct: 594 GEVDNALGIFRDISSKYYLPDVVAHNILINGFRIS--GKLSEAQEVMEEMLEKGLFPSIV 651
Query: 480 MWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHN 539
+ +I C +G+++KA C KM+++E S L++ CS R +A H
Sbjct: 652 TYNLMIDVWCKSGNIEKAIACLNKMIDEE-ESPTVVTYTSLIDGLCSTGRPDEAIALWHK 710
Query: 540 CVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDP-----FIKYVSK 594
+ + P Y + L + AL+ M GF +D FI ++
Sbjct: 711 -MMDKGCAPNKIAYTAFVNGLCKRARVDTALTYYEEMMTKGFE--LDTFSCLYFINFLIS 767
Query: 595 SGTSDDAIAFLKGMTSK 611
+G + LK + K
Sbjct: 768 TGNATKGCELLKEVLQK 784
>gi|125540047|gb|EAY86442.1| hypothetical protein OsI_07823 [Oryza sativa Indica Group]
Length = 703
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 66/287 (22%), Positives = 121/287 (42%), Gaps = 9/287 (3%)
Query: 282 KKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVK 341
++ L+ R +E G+ + +Y A+ E ++L EM KG + TC
Sbjct: 129 EEGLLMLRRMKELGW-RPSTRAYAAVVDFRCWERKAKEAEEMLQEMFEKGLAPCVVTCTA 187
Query: 342 VLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLD--MRLFSKVVRVF 399
V+ + + + +A+ + E KP+V L++ ++ M L +K+ RV
Sbjct: 188 VINAYCKEGRMSDALRVLELMKLRGCKPNVWTYNALVQGFCNEGKVHKAMALLNKM-RVC 246
Query: 400 RENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKK 459
N + +T N +++ G + ++L+ ME G IA + + L G+
Sbjct: 247 GVNPDAVT---YNLLIRGQCIDGHIESAFRLLRLMEGDGLIADQYTYNALINALCKDGRT 303
Query: 460 DEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDL 519
D+A D +E G + SLI G C +G +D A +KMV G + Y
Sbjct: 304 DQACSLFDSLETRGIKPNAVTFNSLINGLCKSGKVDIAWKFLEKMVSA-GCTPDTYTYSS 362
Query: 520 LVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGF 566
+ C + + F+ +++ D+KP Y +I LL +R +
Sbjct: 363 FIEHLCKMKGSQEGLSFIGEMLQK-DVKPSTVNYTIVIHKLLKERNY 408
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 74/360 (20%), Positives = 140/360 (38%), Gaps = 35/360 (9%)
Query: 284 ALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVL 343
AL + SG+ + D ++N++ R + +D + D+M +G+ ++ + ++
Sbjct: 30 ALRYLSLMVRSGW-RPDAYTFNSLIVGYCRTNQVDVARDLFDKMPLRGFAQDVVSYAALI 88
Query: 344 GRFSERNMVKEAV---------DLYEFAM----ACKNKPSVNCCTFLLRKIVVSKQLDMR 390
F E + EAV D++ +A CK L R + + R
Sbjct: 89 EGFCETGRIDEAVELFGEMDQPDMHMYAALVKGLCKAGRGEEGLLMLRRMKELGWRPSTR 148
Query: 391 LFSKVV------RVFRENGNVLTD----------AMLNSVLKALISVGRMGECNKILKAM 434
++ VV R +E +L + +V+ A GRM + ++L+ M
Sbjct: 149 AYAAVVDFRCWERKAKEAEEMLQEMFEKGLAPCVVTCTAVINAYCKEGRMSDALRVLELM 208
Query: 435 EEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDL 494
+ G + + + + GK +A ++ M G + + LI+G C+ G +
Sbjct: 209 KLRGCKPNVWTYNALVQGFCNEGKVHKAMALLNKMRVCGVNPDAVTYNLLIRGQCIDGHI 268
Query: 495 DKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYE 554
+ A +++E +G Y + L+N C R AC + + +KP T+
Sbjct: 269 ESAFRLL-RLMEGDGLIADQYTYNALINALCKDGRTDQACSLF-DSLETRGIKPNAVTFN 326
Query: 555 ELIKNLLVQRGFKDALSLLCLMKDHGFPP---FVDPFIKYVSKSGTSDDAIAFLKGMTSK 611
LI L A L M G P FI+++ K S + ++F+ M K
Sbjct: 327 SLINGLCKSGKVDIAWKFLEKMVSAGCTPDTYTYSSFIEHLCKMKGSQEGLSFIGEMLQK 386
Score = 43.1 bits (100), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 69/335 (20%), Positives = 127/335 (37%), Gaps = 36/335 (10%)
Query: 293 ESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMV 352
E+ +K + ++N++ + L + +D WK L++M S G + T + +
Sbjct: 314 ETRGIKPNAVTFNSLINGLCKSGKVDIAWKFLEKMVSAGCTPDTYTYSSFIEHLCKMKGS 373
Query: 353 KEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRE------NGNVL 406
+E + + KPS T IV+ K L R + V R + E N +V+
Sbjct: 374 QEGLSFIGEMLQKDVKPSTVNYT-----IVIHKLLKERNYGLVARTWGEMVSSGCNPDVV 428
Query: 407 TDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFM 466
T + ++A GR+ E +L M + G + + + +S G+ D A +
Sbjct: 429 T---YTTSMRAYCIEGRLNEAENVLMEMSKNGVTVDTMAYNTLMDGHASIGQTDHAVSIL 485
Query: 467 DHMEASGSDVGDKMWVSLIK-----------------GHCVAGDLDKAADCFQKMVEKEG 509
M + S + L++ G A +L F M + E
Sbjct: 486 KQMTSVASVPNQFTYFILLRHLVRMRLVEDVLPLTPAGVWKAIELTDVFGLFDVMKKNEF 545
Query: 510 TSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDA 569
++G +L + R +A V + ++E + Y L+ + + DA
Sbjct: 546 LPNSGTYSSIL-EGFSEDGRTEEATSLV-SLMKEDSISLNEDIYTALVTCFCKSKRYLDA 603
Query: 570 LSLLCLMKDHGFPPFVDPFIKYVSK---SGTSDDA 601
L+C M HGF P + + +S G +D A
Sbjct: 604 WVLVCSMIQHGFIPHLMSYQHLLSGLICEGQTDKA 638
Score = 43.1 bits (100), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 50/234 (21%), Positives = 91/234 (38%), Gaps = 10/234 (4%)
Query: 412 NSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEA 471
N+V+++L + + L M G+ + + + + D A + D M
Sbjct: 15 NAVIRSLCRRADLASALRYLSLMVRSGWRPDAYTFNSLIVGYCRTNQVDVARDLFDKMPL 74
Query: 472 SGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAI 531
G + +LI+G C G +D+A + F +M + + +A LV C R
Sbjct: 75 RGFAQDVVSYAALIEGFCETGRIDEAVELFGEMDQPDMHMYAA-----LVKGLCKAGRGE 129
Query: 532 DACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFV---DPF 588
+ + ++E +P Y ++ +R K+A +L M + G P V
Sbjct: 130 EGLLMLRR-MKELGWRPSTRAYAAVVDFRCWERKAKEAEEMLQEMFEKGLAPCVVTCTAV 188
Query: 589 IKYVSKSGTSDDAIAFLKGMTSKRF-PSMSVVLCLFAAFFQARRHSEAQDLLSK 641
I K G DA+ L+ M + P++ L F + +A LL+K
Sbjct: 189 INAYCKEGRMSDALRVLELMKLRGCKPNVWTYNALVQGFCNEGKVHKAMALLNK 242
>gi|359497434|ref|XP_003635514.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
mitochondrial-like [Vitis vinifera]
Length = 347
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 79/327 (24%), Positives = 144/327 (44%), Gaps = 22/327 (6%)
Query: 300 DESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLY 359
D +YN + L ++ + ++++EM+ KG E + T ++ RF + ++EA ++
Sbjct: 13 DIFTYNTLILGLCKKGYLVSARELMNEMQIKGCEPNVITYTILIDRFCKEGRLEEARNVL 72
Query: 360 EFAMACK----NKPSVNC-CTFLLRKIVVSKQLDM--RLFSKVVRVFRENGNVLTDAMLN 412
+ M+ K N NC + L + V L+M + SK + ++ T N
Sbjct: 73 D-EMSGKGLALNAVGYNCLISALCKDEKVQDALNMFGDMSSKGCKP-----DIFT---FN 123
Query: 413 SVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEAS 472
S++ L V + E + + M G IA++ + + G EA + ++ M
Sbjct: 124 SLIFGLCKVNKFEEALGLYQDMLLEGVIANTITYNTLIHAFLRRGAMQEALKLVNDMLFR 183
Query: 473 GSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAID 532
G + D + LIK C AG+++K F+ M+ K G + + ++L+N C
Sbjct: 184 GCPLDDITYNGLIKALCRAGNIEKGLALFEDMMSK-GLNPNNISCNILINGLCRTGNIQH 242
Query: 533 ACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPP---FVDPFI 589
A +F+ + + L P TY LI L ++AL+L ++ G P + I
Sbjct: 243 ALEFLRDMIHR-GLTPDIVTYNSLINGLCKTGRAQEALNLFDKLQVEGICPDAITYNTLI 301
Query: 590 KYVSKSGTSDDAIAFL-KGMTSKRFPS 615
+ K G DDA L +G+ S P+
Sbjct: 302 SWHCKEGMFDDAHLLLSRGVDSGFIPN 328
>gi|225456753|ref|XP_002268934.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g74580 [Vitis vinifera]
gi|297733985|emb|CBI15232.3| unnamed protein product [Vitis vinifera]
Length = 764
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 67/327 (20%), Positives = 132/327 (40%), Gaps = 35/327 (10%)
Query: 295 GFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKE 354
GFV DES+Y ++ + L ++ IDR V +E KG + + C ++ S++ ++ +
Sbjct: 350 GFVP-DESTYCSLINGLCQDGDIDRAINVFNEAMEKGLKPNLVLCNTLVKGLSQQGLILQ 408
Query: 355 AV-------------DLYEFAMACKNKPSVNCCT----FLLRKIVVSKQLDMRLFSKVV- 396
A+ D++ + + + C + ++ I D+ F+ ++
Sbjct: 409 ALKLMNEMSENGCSPDIWTYNLVINGLCKIGCVSDADNLVIDAIAKGHLPDVFTFNTLID 468
Query: 397 ----RVFRENGNVLTDAM-----------LNSVLKALISVGRMGECNKILKAMEEGGFIA 441
++ +N + D M NS+L L G+ + K M E G +
Sbjct: 469 GYCKKLKLDNAIEIVDRMWNHGVSPDVITYNSILNGLCKAGKYEDVMGTFKLMMEKGCVP 528
Query: 442 SSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCF 501
+ + + A K +EA ++ M+ G + +L+KG C GDLD A F
Sbjct: 529 NIITYNILTESFCKARKVEEALNLIEEMQNKGLTPDVVNFGTLMKGFCDNGDLDGAYQLF 588
Query: 502 QKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLL 561
+++ E+ SH ++++N + K ++ + + N + E P TY +I
Sbjct: 589 KRVDEQYKFSHTIATYNIMINAFAGK-LNMNMAEKLFNKMCENGFSPDSYTYRVMIDGFC 647
Query: 562 VQRGFKDALSLLCLMKDHGFPPFVDPF 588
S L + + G P + F
Sbjct: 648 KTGNINSGYSFLLVKIEKGLIPSLTTF 674
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 85/390 (21%), Positives = 145/390 (37%), Gaps = 71/390 (18%)
Query: 322 KVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKI 381
++L+ M S+G E V+G F E N EA +L+E + P + L+ +
Sbjct: 167 RLLNNMPSQGCESSAVAYCTVIGGFYEENHRVEAHELFEEMLGLGICPDIMAFNKLIHTL 226
Query: 382 VVSK--QLDMRLFSKVVR------VFREN---GNVLTDAMLNSVLKALISVGR------- 423
Q RL +KV++ +F N AMLN ++ L VGR
Sbjct: 227 CRKGHVQESERLLNKVLKRGVSPNLFTVNIFIQGFCQRAMLNEAIRLLDGVGRGLTPDVI 286
Query: 424 --------------MGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHM 469
+ E L+ M G+ + I G A++ +
Sbjct: 287 TYNTLICGLCKNFKVVEAEHYLRKMVNEGYEPDGFTYNSIIDGYCKLGMMQNADQILRDG 346
Query: 470 EASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEK-------------EGTSHAG-- 514
G + + SLI G C GD+D+A + F + +EK +G S G
Sbjct: 347 AFKGFVPDESTYCSLINGLCQDGDIDRAINVFNEAMEKGLKPNLVLCNTLVKGLSQQGLI 406
Query: 515 -------------------YAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEE 555
+ +L++N C DA V + + + L P T+
Sbjct: 407 LQALKLMNEMSENGCSPDIWTYNLVINGLCKIGCVSDADNLVIDAIAKGHL-PDVFTFNT 465
Query: 556 LIKNLLVQRGFKDALSLLCLMKDHGFPPFV---DPFIKYVSKSGTSDDAIAFLKGMTSKR 612
LI + +A+ ++ M +HG P V + + + K+G +D + K M K
Sbjct: 466 LIDGYCKKLKLDNAIEIVDRMWNHGVSPDVITYNSILNGLCKAGKYEDVMGTFKLMMEKG 525
Query: 613 -FPSMSVVLCLFAAFFQARRHSEAQDLLSK 641
P++ L +F +AR+ EA +L+ +
Sbjct: 526 CVPNIITYNILTESFCKARKVEEALNLIEE 555
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 71/312 (22%), Positives = 119/312 (38%), Gaps = 8/312 (2%)
Query: 274 VDKLGDEPKKAL-IFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGY 332
V K P KAL IF +E GF KH +Y M LG + +VL E R
Sbjct: 13 VVKYQKNPLKALEIFNSVKKEDGF-KHTLLTYKGMIEKLGFHGEFEAMEEVLAETRMNID 71
Query: 333 EMEMETC-VKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRL 391
+E + + + + ++EAVD++E +PSV ++ +V + D
Sbjct: 72 NGLLEGVYIGAMRNYGRKGKIQEAVDVFERMDFFNCEPSVQSYNAIMNILVEYRYFDQA- 130
Query: 392 FSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAF 451
KV R+ G V +K+ R ++L M G +S+ +
Sbjct: 131 -HKVYMRMRDKGIVPDVYTFTIRMKSFCRTSRPHAARRLLNNMPSQGCESSAVAYCTVIG 189
Query: 452 RLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTS 511
+ EA+E + M G + LI C G + ++ K++ K G S
Sbjct: 190 GFYEENHRVEAHELFEEMLGLGICPDIMAFNKLIHTLCRKGHVQESERLLNKVL-KRGVS 248
Query: 512 HAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALS 571
+ +++ + +C + +A + + R L P TY LI L +A
Sbjct: 249 PNLFTVNIFIQGFCQRAMLNEAIRLLDGVGR--GLTPDVITYNTLICGLCKNFKVVEAEH 306
Query: 572 LLCLMKDHGFPP 583
L M + G+ P
Sbjct: 307 YLRKMVNEGYEP 318
>gi|125549696|gb|EAY95518.1| hypothetical protein OsI_17364 [Oryza sativa Indica Group]
Length = 847
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 88/383 (22%), Positives = 157/383 (40%), Gaps = 49/383 (12%)
Query: 282 KKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVK 341
+ A F+ ++GF + +YNA+ S+L + ++VLDEM S G ++ T
Sbjct: 255 EPAFFCFKRLRDAGFRVLETHAYNALLSLLLTRGLAFKAFEVLDEMSSSGCALDEGTYEL 314
Query: 342 VLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRE 401
V+ + + A +++ +MR RE
Sbjct: 315 VVPALARAGRIDAARKMFD---------------------------EMRK--------RE 339
Query: 402 NGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDE 461
+ M ++ L GR+ + + M G AS + + + L AGK D
Sbjct: 340 GIGRASAGMYGVLVDVLAKAGRLDAAMGMYREMVAVGHRASPAVSTAMVEGLVRAGKLDA 399
Query: 462 ANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEG--TSHAGYAIDL 519
E + M G ++ +++ + +G LD A F M EK G + A YA
Sbjct: 400 GMELWEEMRRGGLRPSFGLYTMVVEANARSGRLDVATQLFGDM-EKSGFFPTPATYAC-- 456
Query: 520 LVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDH 579
LV + S + +DA +++ + +P +T+ L+ L +R A +L MK
Sbjct: 457 LVEMHASAGQ-VDAAMRLYHSMANAGQRPGLSTFTALLMMLANKRMLDLAAKVLLEMKAS 515
Query: 580 GFPPFV---DPFIKYVSKSGTSDDAIAFLKGMTSKRFPSMSVVL-CLFAAFFQARRHSEA 635
GFP V D + Y+ K G+++ A+ +L+ M S + + ++ LF + + + A
Sbjct: 516 GFPIEVTASDLLMIYI-KEGSTELALRWLRFMGSAGIRTNNFIIRQLFESCMKTGLYDSA 574
Query: 636 QDLLSKCPRYVRNHADVLNLLYS 658
+ LL YV A V +LY+
Sbjct: 575 RPLLET---YVAGAAKVDLILYT 594
>gi|449448914|ref|XP_004142210.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
chloroplastic-like [Cucumis sativus]
gi|449525343|ref|XP_004169677.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
chloroplastic-like [Cucumis sativus]
Length = 768
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 73/351 (20%), Positives = 140/351 (39%), Gaps = 12/351 (3%)
Query: 297 VKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAV 356
+K D YN + +VL + + M + ++ T ++ + + V+ A+
Sbjct: 164 IKPDTRFYNVLLNVLVDANKLKLVESAHSSMVRRRIRHDVSTFNILIKALCKAHQVRPAI 223
Query: 357 DLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLK 416
+ E + P T +++ + LD L ++ E G TD +N ++
Sbjct: 224 LMMEEMPSYGLSPDETTFTTIMQGYIEGGNLDGAL--RIKEQMVEYGCPCTDVTVNVLIN 281
Query: 417 ALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDV 476
GR+ + ++ GF + + L G A E +D M G D
Sbjct: 282 GFCKQGRIDQALSFIQEAVSEGFRPDQFTYNTLVNGLCKIGHAKHAMEVVDAMLLGGLDP 341
Query: 477 GDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKF 536
+ SLI G C G++++A +MV ++ + +A + ++++ C +NR +D
Sbjct: 342 DIYTYNSLISGLCKLGEIEEAVKILDQMVSRDCSPNA-VTYNAIISSLCKENR-VDEATE 399
Query: 537 VHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPF-----IKY 591
+ + + P T+ LI+ L + K A+ L MK G P D F I
Sbjct: 400 IARLLTSKGILPDVCTFNSLIQGLCLSSNHKSAMDLFEEMKGKGCRP--DEFTYNMLIDS 457
Query: 592 VSKSGTSDDAIAFLKGMTSKRFPSMSVVL-CLFAAFFQARRHSEAQDLLSK 641
+ S ++A+ LK M V+ L F + +R EA+++ +
Sbjct: 458 LCSSRKLEEALNLLKEMELNGCARNVVIYNTLIDGFCKNKRIEEAEEIFDE 508
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 63/281 (22%), Positives = 116/281 (41%), Gaps = 4/281 (1%)
Query: 303 SYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFA 362
+YNA+ S L +E+ +D ++ + SKG ++ T ++ + K A+DL+E
Sbjct: 380 TYNAIISSLCKENRVDEATEIARLLTSKGILPDVCTFNSLIQGLCLSSNHKSAMDLFEEM 439
Query: 363 MACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVG 422
+P L+ + S++L+ L +++ NG + N+++
Sbjct: 440 KGKGCRPDEFTYNMLIDSLCSSRKLEEAL--NLLKEMELNGCARNVVIYNTLIDGFCKNK 497
Query: 423 RMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWV 482
R+ E +I ME G S + + L + + ++A + MD M G +
Sbjct: 498 RIEEAEEIFDEMELQGVSRDSVTYNTLIDGLCKSKRVEDAAQLMDQMIMEGLRPDKFTYN 557
Query: 483 SLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVR 542
SL+ C GD+ KAAD Q M G + L++ C R A + + +
Sbjct: 558 SLLTHFCKTGDIKKAADIVQTMT-SSGCNPDIVTYATLISGLCKAGRVQVASRLLRSIQM 616
Query: 543 EYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPP 583
+ + H Y +I+ L + +A+ L M D PP
Sbjct: 617 KGMVLTPH-AYNPVIQALFKRNRTHEAMRLFREMLDKSEPP 656
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 84/365 (23%), Positives = 135/365 (36%), Gaps = 13/365 (3%)
Query: 284 ALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVL 343
AL F WA + S Y + LG+ + +VL+EM+ G E + + +
Sbjct: 80 ALRVFNWASKQPNFVPSSSVYEEILRKLGKAGSFEYMRRVLEEMKLSGCEFDRGIFLIFV 139
Query: 344 GRFSERNMVKEAVDLYEFAM-ACKNKPSVNCCTFLLRKIVVSKQLDM--RLFSKVVRVFR 400
+ + + E V + + + KP LL +V + +L + S +VR R
Sbjct: 140 ESYGKFELYDEVVGIVKVMEDEYRIKPDTRFYNVLLNVLVDANKLKLVESAHSSMVRR-R 198
Query: 401 ENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKD 460
+V T N ++KAL ++ +++ M G + I G D
Sbjct: 199 IRHDVST---FNILIKALCKAHQVRPAILMMEEMPSYGLSPDETTFTTIMQGYIEGGNLD 255
Query: 461 EANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLL 520
A + M G D LI G C G +D+A Q+ V EG + + L
Sbjct: 256 GALRIKEQMVEYGCPCTDVTVNVLINGFCKQGRIDQALSFIQEAV-SEGFRPDQFTYNTL 314
Query: 521 VNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHG 580
VN C A A + V + + L P TY LI L ++A+ +L M
Sbjct: 315 VNGLCKIGHAKHAMEVV-DAMLLGGLDPDIYTYNSLISGLCKLGEIEEAVKILDQMVSRD 373
Query: 581 FPPFV---DPFIKYVSKSGTSDDAIAFLKGMTSKR-FPSMSVVLCLFAAFFQARRHSEAQ 636
P + I + K D+A + +TSK P + L + H A
Sbjct: 374 CSPNAVTYNAIISSLCKENRVDEATEIARLLTSKGILPDVCTFNSLIQGLCLSSNHKSAM 433
Query: 637 DLLSK 641
DL +
Sbjct: 434 DLFEE 438
Score = 44.3 bits (103), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 55/249 (22%), Positives = 106/249 (42%), Gaps = 10/249 (4%)
Query: 262 NVTFSNDLVK-FVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRF 320
NV N L+ F +K +E ++ F E G V D +YN + L + ++
Sbjct: 482 NVVIYNTLIDGFCKNKRIEEAEE---IFDEMELQG-VSRDSVTYNTLIDGLCKSKRVEDA 537
Query: 321 WKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRK 380
+++D+M +G + T +L F + +K+A D+ + + P + L+
Sbjct: 538 AQLMDQMIMEGLRPDKFTYNSLLTHFCKTGDIKKAADIVQTMTSSGCNPDIVTYATLISG 597
Query: 381 IVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFI 440
+ + ++ ++ S+++R + G VLT N V++AL R E ++ + M +
Sbjct: 598 LCKAGRV--QVASRLLRSIQMKGMVLTPHAYNPVIQALFKRNRTHEAMRLFREMLDKSEP 655
Query: 441 ASSNMKSKIAFR--LSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAA 498
+ + KI +R + G EA +F M G+ +V L +G C D
Sbjct: 656 PDA-ITYKIVYRGLCNGGGPIGEAVDFTVEMIERGNIPEFSSFVMLAEGLCTLSMDDTLV 714
Query: 499 DCFQKMVEK 507
++EK
Sbjct: 715 KLVDMIMEK 723
>gi|302816960|ref|XP_002990157.1| hypothetical protein SELMODRAFT_131102 [Selaginella moellendorffii]
gi|300142012|gb|EFJ08717.1| hypothetical protein SELMODRAFT_131102 [Selaginella moellendorffii]
Length = 760
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 88/360 (24%), Positives = 144/360 (40%), Gaps = 29/360 (8%)
Query: 232 NSIEKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKF--VVD---KLGDEPKKALI 286
N++ +S IC RS VE + V +LV + V+D K GD P AL
Sbjct: 154 NNVFVYSSLICAYGRSGKLAKAVE-IFEAMKVVCKPNLVVYNAVIDACSKGGDYPT-ALR 211
Query: 287 FFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRF 346
FR E G + D ++N + S GR + + ++ EM +G + T ++ +
Sbjct: 212 IFREMLEQG-MSPDRITFNTLISAAGRANRWEECDRIFAEMEERGIARDDVTYNTLIATY 270
Query: 347 SERNMVKEAVDLYE-FAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRE--NG 403
+ L E A + +PSV + ++ + L + + +F+E N
Sbjct: 271 CRGGQMHLGAALMETMAKSSGIEPSV-----ITYSTMIDGYAKLGLAHEAIALFQEMRNQ 325
Query: 404 NVLTDAM-LNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEA 462
NV D + N+++ +G E + I +AMEE GF + + GK EA
Sbjct: 326 NVEPDGICYNTMVDIHARLGNFDEAHSIRRAMEEAGFAKDIVTYNALLDSYGKQGKFREA 385
Query: 463 NEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVN 522
++ M+ G+ + +LI +C G A FQ V+K G LV+
Sbjct: 386 MSLLEEMKQRGASPNILTYSALIDAYCKHGFHRDAMALFQD-VKKAGLQPDVVLYSTLVD 444
Query: 523 TYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFP 582
C KN + D + + + ++P TY L+ DA CLM FP
Sbjct: 445 G-CCKNGSPDEALALLEEMADNGIRPNVITYNSLL----------DAYGRQCLMVRKNFP 493
Score = 52.8 bits (125), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 78/358 (21%), Positives = 140/358 (39%), Gaps = 36/358 (10%)
Query: 268 DLVKFVVDKLG--DEPKKALIFFRW-AEESGFVKHDESSYNAMASVLGREDCIDRFWKVL 324
D + F+V +LG + +K + F W + + + + S LGR D +
Sbjct: 85 DDLPFIVRELGHSGQWEKVVKSFDWMVLQQNLRSQWDKVTSTIISSLGRLGRSDWAQLIF 144
Query: 325 DEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVS 384
D G+ + ++ + + +AV+++E AM KP++ ++ S
Sbjct: 145 DRAVGAGFGNNVFVYSSLICAYGRSGKLAKAVEIFE-AMKVVCKPNLVVYNAVID--ACS 201
Query: 385 KQLDMRLFSKVVRVFRE---NGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIA 441
K D + +R+FRE G N+++ A R EC++I MEE G
Sbjct: 202 KGGD---YPTALRIFREMLEQGMSPDRITFNTLISAAGRANRWEECDRIFAEMEERGIAR 258
Query: 442 SSNMKSKIAFRLSSAGKKDEANEFMDHM-EASGSDVGDKMWVSLIKGHCVAGDLDKAADC 500
+ + G+ M+ M ++SG + + ++I G+ G +A
Sbjct: 259 DDVTYNTLIATYCRGGQMHLGAALMETMAKSSGIEPSVITYSTMIDGYAKLGLAHEAIAL 318
Query: 501 FQKMVEKEGTSHAGYAIDLLVNTYC---------SKNRAIDACKFVHNCVREYDLKPWHT 551
FQ+M + G + +V+ + S RA++ F + V
Sbjct: 319 FQEM-RNQNVEPDGICYNTMVDIHARLGNFDEAHSIRRAMEEAGFAKDIV---------- 367
Query: 552 TYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFV---DPFIKYVSKSGTSDDAIAFLK 606
TY L+ + Q F++A+SLL MK G P + I K G DA+A +
Sbjct: 368 TYNALLDSYGKQGKFREAMSLLEEMKQRGASPNILTYSALIDAYCKHGFHRDAMALFQ 425
>gi|224125710|ref|XP_002319656.1| predicted protein [Populus trichocarpa]
gi|222858032|gb|EEE95579.1| predicted protein [Populus trichocarpa]
Length = 487
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 78/382 (20%), Positives = 153/382 (40%), Gaps = 42/382 (10%)
Query: 298 KHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVD 357
K D +YNA+ S + + I+ VLD M+ KG+ ++ T ++G F + + A+
Sbjct: 41 KPDVFAYNAVISGFCKANRIESAKTVLDRMKRKGFSPDVVTHNIMIGTFCGKGKIDLALK 100
Query: 358 LYEFAMACKN-KPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLK 416
++E + N KP++ T L+ ++ +D L K++ G N + +
Sbjct: 101 VFEELLKDNNCKPTLITYTILIEAYILEGGIDEAL--KLLDEMLSRGLEPDTFTYNVITR 158
Query: 417 ALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDV 476
L G++ + ++ + G + + L + GK DE ++M + + G +
Sbjct: 159 GLCKEGKVDRAFEFVRTLNSRGCKPDVITYNILLRALLNQGKWDEGEKWMSEIFSRGCEP 218
Query: 477 GDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKF 536
+ LI C G ++++ + + M EK G + Y D L+ +C + + A +F
Sbjct: 219 NVVTYSILISSLCRDGKIEESVNLVKVMKEK-GLTPDAYCYDPLIAAFCREGKLDMAIEF 277
Query: 537 V--------------HNCVR--------------------EYDLKPWHTTYEELIKNLLV 562
+ +N + E P ++Y ++ L
Sbjct: 278 LDCMICDGFLPDIVNYNTIMAALCKNGNGDHAVEIFGKLDEVGCPPNVSSYNTMLSALWS 337
Query: 563 QRGFKDALSLLCLMKDHGFPPFV---DPFIKYVSKSGTSDDAIAFLKGMTSKRF-PSMSV 618
AL ++ M G P V + I + + G D+AI L M S RF P++
Sbjct: 338 SGDRYRALGMISQMLSKGIDPDVITYNSLISCLCRDGMVDEAIGLLADMLSGRFQPNIVS 397
Query: 619 VLCLFAAFFQARRHSEAQDLLS 640
+ +A R +A ++L+
Sbjct: 398 YKTVLLGLCKAHRIDDAIEVLA 419
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 54/222 (24%), Positives = 94/222 (42%), Gaps = 31/222 (13%)
Query: 427 CNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASG-SDVGDKMWVSLI 485
C K++K GF S N+ D+A M +E G DV + ++I
Sbjct: 13 CTKLIK-----GFFNSRNI--------------DKATRVMGILEKHGKPDV--FAYNAVI 51
Query: 486 KGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYD 545
G C A ++ A +M +++G S ++++ T+C K + A K +++ +
Sbjct: 52 SGFCKANRIESAKTVLDRM-KRKGFSPDVVTHNIMIGTFCGKGKIDLALKVFEELLKDNN 110
Query: 546 LKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPF-----IKYVSKSGTSDD 600
KP TY LI+ +++ G +AL LL M G P D F + + K G D
Sbjct: 111 CKPTLITYTILIEAYILEGGIDEALKLLDEMLSRGLEP--DTFTYNVITRGLCKEGKVDR 168
Query: 601 AIAFLKGMTSKRF-PSMSVVLCLFAAFFQARRHSEAQDLLSK 641
A F++ + S+ P + L A + E + +S+
Sbjct: 169 AFEFVRTLNSRGCKPDVITYNILLRALLNQGKWDEGEKWMSE 210
Score = 48.1 bits (113), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 61/277 (22%), Positives = 118/277 (42%), Gaps = 36/277 (12%)
Query: 127 VFTHEMVLKVLKNLESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGL 186
V T+ ++L+ L N + DE ++ + + + E + TY++++ + G ++E L
Sbjct: 185 VITYNILLRALLN-QGKWDEGEKWMSEIFSRGCEP-NVVTYSILISSLCRDGKIEESVNL 242
Query: 187 VDVMKKKGYGVASHVRNKMTEKFEKEGLESDLEKLKGIFATGSIDNSIEKVASRICKVVR 246
V VMK+KG ++ + + F +EG +D +IE + IC
Sbjct: 243 VKVMKEKGLTPDAYCYDPLIAAFCREG---------------KLDMAIEFLDCMICDGFL 287
Query: 247 SDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNA 306
DI V ++ + + GD A+ F +E G + SSYN
Sbjct: 288 PDI-------------VNYNTIMAALCKNGNGDH---AVEIFGKLDEVG-CPPNVSSYNT 330
Query: 307 MASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACK 366
M S L R ++ +M SKG + ++ T ++ MV EA+ L ++ +
Sbjct: 331 MLSALWSSGDRYRALGMISQMLSKGIDPDVITYNSLISCLCRDGMVDEAIGLLADMLSGR 390
Query: 367 NKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENG 403
+P++ +L + + ++D + +V+ ENG
Sbjct: 391 FQPNIVSYKTVLLGLCKAHRIDDAI--EVLAAMIENG 425
Score = 43.1 bits (100), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 86/384 (22%), Positives = 151/384 (39%), Gaps = 18/384 (4%)
Query: 186 LVDVMKKKGYGVASHVRNKMTEKFEKEGLESDLEKLKGIFATGSIDNSIEKVASRICKVV 245
++D MK+KG+ N M F +G + DL LK +F DN+ + ++
Sbjct: 66 VLDRMKRKGFSPDVVTHNIMIGTFCGKG-KIDL-ALK-VFEELLKDNNCKPTLITYTILI 122
Query: 246 RSDIWGDDVERQLRDLNVTFSNDL------VKFVVDKLGDEPK--KALIFFRWAEESGFV 297
+ I ++ L+ L+ S L + L E K +A F R G
Sbjct: 123 EAYILEGGIDEALKLLDEMLSRGLEPDTFTYNVITRGLCKEGKVDRAFEFVRTLNSRG-C 181
Query: 298 KHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVD 357
K D +YN + L + D K + E+ S+G E + T ++ ++E+V+
Sbjct: 182 KPDVITYNILLRALLNQGKWDEGEKWMSEIFSRGCEPNVVTYSILISSLCRDGKIEESVN 241
Query: 358 LYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKA 417
L + P C L+ +LDM + + + +G + N+++ A
Sbjct: 242 LVKVMKEKGLTPDAYCYDPLIAAFCREGKLDMAI--EFLDCMICDGFLPDIVNYNTIMAA 299
Query: 418 LISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVG 477
L G +I ++E G + + + + L S+G + A + M + G D
Sbjct: 300 LCKNGNGDHAVEIFGKLDEVGCPPNVSSYNTMLSALWSSGDRYRALGMISQMLSKGIDPD 359
Query: 478 DKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSH-AGYAIDLLVNTYCSKNRAIDACKF 536
+ SLI C G +D+A M+ + Y LL C +R DA +
Sbjct: 360 VITYNSLISCLCRDGMVDEAIGLLADMLSGRFQPNIVSYKTVLL--GLCKAHRIDDAIEV 417
Query: 537 VHNCVREYDLKPWHTTYEELIKNL 560
+ + E +P TTY LI+ +
Sbjct: 418 LAAMI-ENGCQPNETTYTLLIEGI 440
>gi|147828617|emb|CAN73046.1| hypothetical protein VITISV_008668 [Vitis vinifera]
Length = 477
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 73/315 (23%), Positives = 127/315 (40%), Gaps = 7/315 (2%)
Query: 282 KKALIFF--RWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETC 339
+KA++ F AE + +H +++ M S L + ++L M+ + + +
Sbjct: 29 QKAIVIFDSATAEYTNGFRHSHQTFSLMISRLVSANHFRLAEELLCRMKEEKCNITEDIF 88
Query: 340 VKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVF 399
+ + + + +AV ++ + +PS + +V QL + L + R
Sbjct: 89 LSICRAYGRVHKPLDAVRVFRKMKEYECEPSQKSYITVFAILVGENQLKLAL--RFYRYM 146
Query: 400 RENGNVLTDAMLNSVLKALI-SVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGK 458
RE G + A LN ++KAL + G M +I + M G S + L GK
Sbjct: 147 REMGIPPSVASLNVLIKALCKNSGTMDAALRIFREMPNRGCPPHSYTYGTLIXGLCRLGK 206
Query: 459 KDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAID 518
EA E ME + SLI G C + DLD A ++M K G +
Sbjct: 207 IGEAKELFKEMETKACSPTVVTYXSLIHGLCQSKDLDSAIRLLEEMASK-GIKPNVFTYS 265
Query: 519 LLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKD 578
L++ +C + A + + V L P TY L+ L + ++A+ +L MK
Sbjct: 266 SLMDGHCKSGCSSRALELLDMMVSRRHL-PNMITYSTLVHGLCKEGKLQEAVEILDRMKL 324
Query: 579 HGFPPFVDPFIKYVS 593
G P + K +S
Sbjct: 325 QGLRPDAGLYGKIIS 339
>gi|414869870|tpg|DAA48427.1| TPA: hypothetical protein ZEAMMB73_860756 [Zea mays]
gi|414869871|tpg|DAA48428.1| TPA: hypothetical protein ZEAMMB73_860756 [Zea mays]
Length = 741
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 73/329 (22%), Positives = 135/329 (41%), Gaps = 8/329 (2%)
Query: 283 KALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKV 342
+A+ A GFV + + YNA+ ++ + M+SKG + T ++
Sbjct: 197 EAVALLTDAMGKGFVP-NVAVYNALIDGYCSTGDLELAIDIFKGMQSKGCLPNVRTYTQL 255
Query: 343 LGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFREN 402
+ F + V+ A+ LY + P+V T L++ L+ +++
Sbjct: 256 ICGFCKSGKVERAMVLYSRMIEAGLAPNVVTYTTLIQGQCSEGHLEHAF--RLLHSMEAC 313
Query: 403 GNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEA 462
G + ++ AL GR+ E + L ++ + G + + + + L +GK D A
Sbjct: 314 GLAPNEWTCLVLIDALCKHGRIEEAQQFLGSLVQKGIKVNQVIYTSMIDALCKSGKFDGA 373
Query: 463 NEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVN 522
+ M + G M+ SLI G C L +A M+E G +L++
Sbjct: 374 HNLMQKIITEGFVPDAHMYSSLIDGLCRENKLLEAISLLNDMIES-GVQANAVPFTILID 432
Query: 523 TYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFP 582
+ + R+ D+ K + + + +KP TY I++ +DA S++ M DHG
Sbjct: 433 KHLREFRS-DSPKMISDRMAAAGVKPDVVTYTVFIRSYCQDGRMEDAESMMIQMIDHGVR 491
Query: 583 PFVDPF---IKYVSKSGTSDDAIAFLKGM 608
P + + IK + G A + LK M
Sbjct: 492 PNLTTYNTLIKGYANLGLVSQAFSSLKNM 520
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 60/258 (23%), Positives = 105/258 (40%), Gaps = 9/258 (3%)
Query: 391 LFSKVVRVF---RENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKS 447
LF+ R+F + G T ++L+ L G + E + M G S++ S
Sbjct: 124 LFAHACRLFLLMPQRGCARTPFTYAALLQGLCGAGMVREAMAVFAGMWPDGCAPDSHVYS 183
Query: 448 KIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEK 507
+ L AG+ EA + G ++ +LI G+C GDL+ A D F+ M +
Sbjct: 184 IMVHGLCGAGRAGEAVALLTDAMGKGFVPNVAVYNALIDGYCSTGDLELAIDIFKGM-QS 242
Query: 508 EGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFK 567
+G L+ +C K+ ++ +++ + E L P TY LI+ + +
Sbjct: 243 KGCLPNVRTYTQLICGFC-KSGKVERAMVLYSRMIEAGLAPNVVTYTTLIQGQCSEGHLE 301
Query: 568 DALSLLCLMKDHGFPP---FVDPFIKYVSKSGTSDDAIAFLKGMTSKRFPSMSVVLC-LF 623
A LL M+ G P I + K G ++A FL + K V+ +
Sbjct: 302 HAFRLLHSMEACGLAPNEWTCLVLIDALCKHGRIEEAQQFLGSLVQKGIKVNQVIYTSMI 361
Query: 624 AAFFQARRHSEAQDLLSK 641
A ++ + A +L+ K
Sbjct: 362 DALCKSGKFDGAHNLMQK 379
>gi|218200911|gb|EEC83338.1| hypothetical protein OsI_28730 [Oryza sativa Indica Group]
gi|258644730|dbj|BAI39975.1| putative fertility restorer homologue [Oryza sativa Indica Group]
Length = 918
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 69/334 (20%), Positives = 134/334 (40%), Gaps = 8/334 (2%)
Query: 316 CIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCT 375
C + W++ +M++KG E + T ++ ++K A+ L+ P+
Sbjct: 335 CYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGILKVAIGLFHRMSRDGVFPNTVTYN 394
Query: 376 FLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAME 435
L+ +V ++++ V+ + NG N ++K +G + ++ M
Sbjct: 395 ALINILVENRRIKYAFV--VLNLMGRNGCSPNIVTYNEMIKGYCILGDPKKAMLVMNNML 452
Query: 436 EGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLD 495
+ G A+ + I +G A +D M G + + LI G C ++
Sbjct: 453 QRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGFCKISKME 512
Query: 496 KAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEE 555
A F +MV+ +G L++ YC K+ +D + ++ +P TY
Sbjct: 513 SAFGLFNEMVD-DGLCPNEVTYTALIDGYC-KDEKLDTATSLLEHMKRSGCRPNVQTYNV 570
Query: 556 LIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPF---IKYVSKSGTSDDAIAFLKGMTSKR 612
LI L Q F A L +M + G P V + I + K+G++ A+ M +
Sbjct: 571 LIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALEMFNKMIEQG 630
Query: 613 -FPSMSVVLCLFAAFFQARRHSEAQDLLSKCPRY 645
P++ L A Q + EA++L ++ R+
Sbjct: 631 CLPNLLTYSSLIRALGQEGKVEEAENLFAELERH 664
Score = 46.2 bits (108), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 46/200 (23%), Positives = 82/200 (41%), Gaps = 5/200 (2%)
Query: 412 NSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEA 471
++++ L GR+ E +++ M G + +++ + L G ++A M+
Sbjct: 289 STLINGLCDSGRVNEAFDLIREMILHGILPTAHTCTGPIIALCDMGCYEDAWRLFVDMKN 348
Query: 472 SGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAI 531
G + + +LI G CV+G L A F +M ++G + L+N +NR I
Sbjct: 349 KGCEPNVYTYTALISGLCVSGILKVAIGLFHRM-SRDGVFPNTVTYNALINILV-ENRRI 406
Query: 532 DACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFV---DPF 588
V N + P TY E+IK + K A+ ++ M G + +
Sbjct: 407 KYAFVVLNLMGRNGCSPNIVTYNEMIKGYCILGDPKKAMLVMNNMLQRGHSANLVTYNTI 466
Query: 589 IKYVSKSGTSDDAIAFLKGM 608
IK SG + A+ L M
Sbjct: 467 IKGYCDSGNTTSALRILDLM 486
>gi|440793601|gb|ELR14780.1| PPR repeat/pentatricopeptide repeat domain containing protein,
partial [Acanthamoeba castellanii str. Neff]
Length = 610
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 80/397 (20%), Positives = 156/397 (39%), Gaps = 45/397 (11%)
Query: 273 VVDKLG--DEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSK 330
+V LG E KA FF + G SYN+M R ID+ +L+ M+ K
Sbjct: 124 LVSALGRAGEVGKAQYFFNEIQRLGMTP-TLHSYNSMIMAFARAGRIDKVRDMLEVMKHK 182
Query: 331 GYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMR 390
G E ++ T +++ + V EA Y+ + ++ V Q D++
Sbjct: 183 GIEPDVRTYTEIINNSCKAGRVAEA---YQTFIEMQD---------------VGVQPDLK 224
Query: 391 LFSKVVRVFRENGNVLTDAML----------------NSVLKALISVGRMGECNKILKAM 434
++S ++ F G+ L L + +L L ++ E ++++AM
Sbjct: 225 VYSALIAGFSHVGDHLKAQQLKEEMEALGLEASMITYSGMLSGLARNRQLTEMERVIEAM 284
Query: 435 EEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDL 494
++ + ++ + R+S D+A + + +W +L++ A D+
Sbjct: 285 KKRNMVPNARALGDLINRMSDTMPMDQAFNMAQALVQKKVEANADVWHALLRVCAKADDV 344
Query: 495 DKAADCFQKMV--EKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTT 552
+K M E S + Y + L++T+ R + + +R++ +KP +
Sbjct: 345 EKGIRILDVMRSHSPELVSASSYCV--LIDTFAKAGRVSRGATLLAH-MRKHKIKPDVSI 401
Query: 553 YEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPF---IKYVSKSGTSDDAIAFLKGMT 609
Y I+ + + G+ AL + LMK G P F I +G ++A A M
Sbjct: 402 YNVFIEGAMRETGYSKALQVFELMKAEGVRPSHTTFSILIDAAGHAGRPEEAEAHFAAMG 461
Query: 610 SKRFPSMSVVLCLFAAFFQARRHSEAQDLLSKCPRYV 646
+ P + L A + + +A+ +L R+
Sbjct: 462 TSPRPDTNNYNSLIEALARNGQLDKAERVLDSLLRHT 498
>gi|297797161|ref|XP_002866465.1| hypothetical protein ARALYDRAFT_496372 [Arabidopsis lyrata subsp.
lyrata]
gi|297312300|gb|EFH42724.1| hypothetical protein ARALYDRAFT_496372 [Arabidopsis lyrata subsp.
lyrata]
Length = 977
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 58/234 (24%), Positives = 95/234 (40%), Gaps = 6/234 (2%)
Query: 412 NSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEA 471
+++K + R G+ ++LK M E G + + + LS A K DEA F+ M
Sbjct: 459 TTLIKTFLQKSRFGDAVRVLKEMREQGIAPDTFCYNSLIIGLSKAKKMDEARSFLLEMVE 518
Query: 472 SGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAI 531
+G + + I G+ AG+ A ++M+E G L+N YC K + I
Sbjct: 519 NGFKPDAFTYGAFISGYIEAGEFASADKYVKEMLEC-GVIPNKVLCTGLINEYCKKGKVI 577
Query: 532 DACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFV---DPF 588
+AC + V + L TY L+ L+ DA + M+ G P V
Sbjct: 578 EACSAFRSMVEQGILGDAK-TYTVLMNGLVKNGKVNDAEEIFHEMRGKGIAPDVFSYGTL 636
Query: 589 IKYVSKSGTSDDAIAFLKGMTSKRFPSMSVVL-CLFAAFFQARRHSEAQDLLSK 641
I SK G A + M S ++ L F ++ +A++LL +
Sbjct: 637 IDGFSKLGNMQKASSIFDEMVQAGLTSNVIIYNMLLGGFCRSGEIEKAKELLDE 690
Score = 44.7 bits (104), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 67/180 (37%), Gaps = 25/180 (13%)
Query: 484 LIKGHCVAGDLDKAADCFQKMVEKEGTSHAGY--------------------AIDLLVNT 523
LI HC G++ A D K E+ GT+ + +LL++
Sbjct: 230 LIGAHCRDGNVQLAKDVLLKTEEELGTATLNVDEALELKKSMSCKGLVPSRQSYNLLIDG 289
Query: 524 YCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGF-- 581
C + R DA + + L + Y LI LL R A L+ M HGF
Sbjct: 290 LCKQKRLEDAKSLLVE-MNSVGLFADNVAYSILIDGLLKGRNADAANGLVHEMVSHGFSI 348
Query: 582 -PPFVDPFIKYVSKSGTSDDAIAFLKGM-TSKRFPSMSVVLCLFAAFFQARRHSEAQDLL 639
P D FI +SK G + A A GM T P L FF+ + + +LL
Sbjct: 349 DPMMYDYFICVMSKEGAMEKAKALFDGMITFGVTPGARAYASLIEGFFREKNVRKGYELL 408
Score = 40.0 bits (92), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 29/123 (23%), Positives = 55/123 (44%), Gaps = 4/123 (3%)
Query: 412 NSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEA 471
+++ +G M + + I M + G ++ + + + +G+ ++A E +D M
Sbjct: 634 GTLIDGFSKLGNMQKASSIFDEMVQAGLTSNVIIYNMLLGGFCRSGEIEKAKELLDEMSG 693
Query: 472 SGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKN--- 528
G + ++I G+C +GDL +A F +M K G + LV+ C N
Sbjct: 694 KGFPPNAVTYCTIIDGYCKSGDLAEAFQLFDEMKLK-GLVPDSFVYTTLVDGCCRLNDVE 752
Query: 529 RAI 531
RAI
Sbjct: 753 RAI 755
>gi|34015232|gb|AAQ56425.1| putative fertility restorer [Oryza sativa Japonica Group]
gi|34015270|gb|AAQ56462.1| putative fertility restorer [Oryza sativa Japonica Group]
Length = 1007
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 69/334 (20%), Positives = 134/334 (40%), Gaps = 8/334 (2%)
Query: 316 CIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCT 375
C + W++ +M++KG E + T ++ ++K A+ L+ P+
Sbjct: 335 CYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGLLKVAIGLFHRMSRDGVFPNTVTYN 394
Query: 376 FLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAME 435
L+ +V ++++ V+ + NG N ++K +G + ++ M
Sbjct: 395 ALINILVENRRIKYAFV--VLNLMGRNGCSPNIVTYNEMIKGYCILGDPKKAMLVMNNML 452
Query: 436 EGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLD 495
+ G A+ + I +G A +D M G + + LI G C ++
Sbjct: 453 QRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGFCKISKME 512
Query: 496 KAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEE 555
A F +MV+ +G L++ YC K+ +D + ++ +P TY
Sbjct: 513 SAFGLFNEMVD-DGLCPNEVTYTALIDGYC-KDEKLDTATSLLEHMKRSGCRPNVQTYNV 570
Query: 556 LIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPF---IKYVSKSGTSDDAIAFLKGMTSKR 612
LI L Q F A L +M + G P V + I + K+G++ A+ M +
Sbjct: 571 LIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALEMFNKMIEQG 630
Query: 613 -FPSMSVVLCLFAAFFQARRHSEAQDLLSKCPRY 645
P++ L A Q + EA++L ++ R+
Sbjct: 631 CLPNLLTYSSLIRALGQEGKVEEAENLFAELERH 664
Score = 46.2 bits (108), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 50/223 (22%), Positives = 91/223 (40%), Gaps = 9/223 (4%)
Query: 389 MRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSK 448
+++F+++ + E V ++N L GR+ E +++ M G + +++ +
Sbjct: 270 LQVFNQMAKEGCEPNTVTYSTLIN----GLCDSGRVNEAFDLIREMILHGILPTAHTCTG 325
Query: 449 IAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKE 508
L G ++A M+ G + + +LI G CV+G L A F +M ++
Sbjct: 326 PIIALCDMGCYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGLLKVAIGLFHRM-SRD 384
Query: 509 GTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKD 568
G + L+N +NR I V N + P TY E+IK + K
Sbjct: 385 GVFPNTVTYNALINILV-ENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGYCILGDPKK 443
Query: 569 ALSLLCLMKDHGFPPFV---DPFIKYVSKSGTSDDAIAFLKGM 608
A+ ++ M G + + IK SG + A+ L M
Sbjct: 444 AMLVMNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLM 486
>gi|147833323|emb|CAN61988.1| hypothetical protein VITISV_026694 [Vitis vinifera]
Length = 553
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 80/352 (22%), Positives = 144/352 (40%), Gaps = 13/352 (3%)
Query: 300 DESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLY 359
D +Y + +E + + K+LDEMR+KG + ++ T ++ + + EA+
Sbjct: 193 DVITYTILIEATCKESGVGQAMKLLDEMRNKGSKPDVVTYNVLINGICKEGRLDEAIKFL 252
Query: 360 EFAMACKNKPSVNCCTFLLRKIV-VSKQLDM-RLFSKVVRVFRENGNVLTDAMLNSVLKA 417
+ +P+V +LR + + +D +L S ++R G + N ++
Sbjct: 253 NNMPSYGCQPNVITHNIILRSMCSTGRWMDAEKLLSDMLR----KGCSPSVVTFNILINF 308
Query: 418 LISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVG 477
L G +G IL+ M G +S + + K D A E++D M + G
Sbjct: 309 LCRQGLLGRAIDILEKMPMHGCTPNSLSYNPLLHGFCKEKKMDRAIEYLDIMVSRGCYPD 368
Query: 478 DKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFV 537
+ +L+ C G +D A + ++ K G S + +++ + A K +
Sbjct: 369 IVTYNTLLTALCKDGKVDVAVEILNQLSSK-GCSPVLITYNTVIDGLSKVGKTERAIKLL 427
Query: 538 HNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFV---DPFIKYVSK 594
+R LKP TY L+ L + +A+ ++ G P + + + K
Sbjct: 428 DE-MRRKGLKPDIITYSSLVSGLSREGKVDEAIKFFHDLEGLGIRPNAITYNSIMLGLCK 486
Query: 595 SGTSDDAIAFLKGMTSKRF-PSMSVVLCLFAAFFQARRHSEAQDLLSK-CPR 644
S +D AI FL M SKR P+ + L EA DLL++ C R
Sbjct: 487 SRQTDRAIDFLAYMISKRCKPTEATYTILIEGIAYEGLAKEALDLLNELCSR 538
Score = 48.5 bits (114), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 76/351 (21%), Positives = 139/351 (39%), Gaps = 14/351 (3%)
Query: 297 VKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAV 356
V D +YN + L + + +VLD K ++ T ++ + + V +A+
Sbjct: 155 VAPDVVTYNTILRTLCDSGKLKQAMEVLDRQLQKECYPDVITYTILIEATCKESGVGQAM 214
Query: 357 DLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRL-FSKVVRVFRENGNVLTDAMLNSVL 415
L + +KP V L+ I +LD + F + + NV+T N +L
Sbjct: 215 KLLDEMRNKGSKPDVVTYNVLINGICKEGRLDEAIKFLNNMPSYGCQPNVITH---NIIL 271
Query: 416 KALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSD 475
+++ S GR + K+L M G S + + L G A + ++ M G
Sbjct: 272 RSMCSTGRWMDAEKLLSDMLRKGCSPSVVTFNILINFLCRQGLLGRAIDILEKMPMHGCT 331
Query: 476 VGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACK 535
+ L+ G C +D+A + MV + G + L+ C K+ +D
Sbjct: 332 PNSLSYNPLLHGFCKEKKMDRAIEYLDIMVSR-GCYPDIVTYNTLLTALC-KDGKVDVAV 389
Query: 536 FVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPF---IKYV 592
+ N + P TY +I L + A+ LL M+ G P + + + +
Sbjct: 390 EILNQLSSKGCSPVLITYNTVIDGLSKVGKTERAIKLLDEMRRKGLKPDIITYSSLVSGL 449
Query: 593 SKSGTSDDAIAF---LKGMTSKRFPSMSVVLCLFAAFFQARRHSEAQDLLS 640
S+ G D+AI F L+G+ + P+ + ++R+ A D L+
Sbjct: 450 SREGKVDEAIKFFHDLEGLGIR--PNAITYNSIMLGLCKSRQTDRAIDFLA 498
>gi|242055005|ref|XP_002456648.1| hypothetical protein SORBIDRAFT_03g040130 [Sorghum bicolor]
gi|241928623|gb|EES01768.1| hypothetical protein SORBIDRAFT_03g040130 [Sorghum bicolor]
Length = 702
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 98/443 (22%), Positives = 170/443 (38%), Gaps = 55/443 (12%)
Query: 196 GVASHVRNKMTEKFEKEGLESDLEKLKGIFATGSIDNSIEKVASRICKVVRSDIWGDDVE 255
GV SH N + + F + SD + + G+ I ++RS DV+
Sbjct: 118 GVRSH--NTLLDAFVRARRYSDADAFFASLSHGAFGRRIAPNLQTYNIILRSLCARGDVD 175
Query: 256 R------QLRDLNVTFSNDLVKFVVDKLG--DEPKKALIFFRWAEESGFVKHDESSYNAM 307
R LR V ++ L D+ AL G V+ D YNA+
Sbjct: 176 RAVSLFSSLRRRGVAPDRVTYSTLMSGLAKHDQLDNALDLLDEMPNYG-VQADAVCYNAL 234
Query: 308 ASVLGREDCIDRFWKVLDEM-RSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACK 366
S R ++ KV +++ R G + T +L + KEA +++ MA
Sbjct: 235 LSGCFRTGMFEKAMKVWEQLVRDPGASPNLATYKVMLDGLCKLGRFKEAGEVWSRMMANN 294
Query: 367 NKPSVNCCTFLLRKIVVSKQLD--MRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRM 424
++ L+ + S +D R++S +V+ G VL ++ NS++K VGR
Sbjct: 295 HQADTVTYGILIHGLCRSGDVDSAARVYSDMVKA----GLVLDVSVYNSLIKGFCEVGRT 350
Query: 425 GEC------------------NKILKAMEEGGFIA------------SSNMKSKIAFR-- 452
GE N + K + + G ++ +S K+ F
Sbjct: 351 GEAWKFWDSTGFSGIRQITTYNIMTKGLLDSGMVSEATELLKQLENDASCSPDKVTFGTL 410
Query: 453 ---LSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEG 509
L G + A E ++ SG ++ + S+I C G A + ++ MV K+G
Sbjct: 411 IHGLCENGYANRAFEILEDARNSGEELDVFSYSSMINRFCKDGRTHDANEVYKNMV-KDG 469
Query: 510 TSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDA 569
+ + L+N +C ++ DA K ++ + P TY LI L +++A
Sbjct: 470 CKPNSHVYNALINGFCRVSKINDAIK-IYIEMTSNGCCPTIITYNTLIDGLCKAEKYQEA 528
Query: 570 LSLLCLMKDHGFPPFVDPFIKYV 592
SL M + GF P + + +
Sbjct: 529 SSLTKEMLERGFKPDIRTYASLI 551
Score = 50.8 bits (120), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 86/399 (21%), Positives = 160/399 (40%), Gaps = 24/399 (6%)
Query: 195 YGVASHVRNKMTEKFEKEGLESDLEKLKGIFATGSIDNSIEKVASRICKVVRSD----IW 250
YG+ H + + + SD+ K G+ S+ NS+ K C+V R+ W
Sbjct: 302 YGILIHGLCRSGDVDSAARVYSDMVK-AGLVLDVSVYNSLIK---GFCEVGRTGEAWKFW 357
Query: 251 GDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASV 310
+R +T N + K ++D +A + E D+ ++ +
Sbjct: 358 DSTGFSGIR--QITTYNIMTKGLLDS--GMVSEATELLKQLENDASCSPDKVTFGTLIHG 413
Query: 311 LGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPS 370
L +R +++L++ R+ G E+++ + ++ RF + +A ++Y+ + KP+
Sbjct: 414 LCENGYANRAFEILEDARNSGEELDVFSYSSMINRFCKDGRTHDANEVYKNMVKDGCKPN 473
Query: 371 VNCCTFLLRKIV-VSKQLDMRLFSKVVRVFRE---NGNVLTDAMLNSVLKALISVGRMGE 426
+ L+ VSK + ++++ E NG T N+++ L + E
Sbjct: 474 SHVYNALINGFCRVSK------INDAIKIYIEMTSNGCCPTIITYNTLIDGLCKAEKYQE 527
Query: 427 CNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIK 486
+ + K M E GF + + L K D A D + +G V + LI
Sbjct: 528 ASSLTKEMLERGFKPDIRTYASLIRGLCRDKKVDVALRIWDEILDAGLQVDVMVHNILIH 587
Query: 487 GHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDL 546
G C AG +D+A + +M EK + + L+ Y + +ID + + + L
Sbjct: 588 GLCSAGKVDEAFCIYLEMKEKNCSPNLVTYNTLMDGFY--EIGSIDKAASLWTAILDNGL 645
Query: 547 KPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFV 585
KP TY IK L + + LL + G P V
Sbjct: 646 KPDIVTYNTRIKGLCSCNRTPEGVLLLNEVLATGIMPTV 684
>gi|297727505|ref|NP_001176116.1| Os10g0368800 [Oryza sativa Japonica Group]
gi|20043026|gb|AAM08834.1|AC113335_14 Putative PPR-repeat protein [Oryza sativa Japonica Group]
gi|22830267|gb|AAN08650.1| hypothetical protein [Oryza sativa Japonica Group]
gi|31431615|gb|AAP53366.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
gi|255679344|dbj|BAH94844.1| Os10g0368800 [Oryza sativa Japonica Group]
Length = 913
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 90/409 (22%), Positives = 158/409 (38%), Gaps = 37/409 (9%)
Query: 263 VTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWK 322
TF+ + + +LG +AL R G V D Y + L + +
Sbjct: 174 TTFTFGVAARALCRLG-RADEALALLRGMARHGCVP-DAVLYQTVIHALCDQGGVTEAAT 231
Query: 323 VLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIV 382
+L+EM G ++ T V+ V+EA L + M P V FLL+ +
Sbjct: 232 LLNEMLLMGCAADVNTFDDVVRGMCGLGRVREAARLVDRMMTKGCMPGVMTYGFLLQGLC 291
Query: 383 VSKQ-------------LDMRLFSKVVRVFRENGNVL---------------TDAMLNSV 414
+Q L++ LF+ V+ G + DA S+
Sbjct: 292 RVRQADEARAMLGRVPELNVVLFNTVIGGCLAEGKLAEATELYETMGLKGCQPDAHTYSI 351
Query: 415 L-KALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASG 473
L L +GR+G ++L+ ME+ GF + + + G D+ ++ M A G
Sbjct: 352 LMHGLCKLGRIGSAVRLLREMEKKGFAPNVVTYTIVLHSFCKNGMWDDTRALLEEMSAKG 411
Query: 474 SDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDA 533
+ + + +I C G +D+A Q+M +G + + + ++ C+ + +A
Sbjct: 412 LTLNSQGYNGMIYALCKDGRMDEAMGLIQEM-RSQGCNPDICSYNTIIYHLCNNEQMEEA 470
Query: 534 CKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFV---DPFIK 590
N + E + TY +I LL ++DA+ L M HG V + IK
Sbjct: 471 EHMFENLLEE-GVVANGITYNTIIHALLRDGRWQDAVRLAKEMILHGCSLDVVSYNGLIK 529
Query: 591 YVSKSGTSDDAIAFLKGMTSKRF-PSMSVVLCLFAAFFQARRHSEAQDL 638
+ K G D ++ L+ M K P+ L + + RR +A +L
Sbjct: 530 AMCKDGNVDRSLVLLEEMAEKGIKPNNVSYNILISELCKERRVRDALEL 578
>gi|449454139|ref|XP_004144813.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09820-like [Cucumis sativus]
gi|449524964|ref|XP_004169491.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09820-like [Cucumis sativus]
Length = 611
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 68/311 (21%), Positives = 132/311 (42%), Gaps = 52/311 (16%)
Query: 297 VKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAV 356
V + ++N + +++ + KV +EM+S+G + + T ++ + EA
Sbjct: 299 VSPNSVTFNVLIDGFCKDENLSAALKVFEEMQSQGLKPTVVTYNSLVNGLCNEGKLNEAK 358
Query: 357 DLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENG------NVLTDAM 410
L + ++ KP+V + +++ +L + +F G NV+T
Sbjct: 359 VLLDEMLSSNLKPNV-----ITYNALINGYCKKKLLEEARELFDNIGKQGLTPNVIT--- 410
Query: 411 LNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHME 470
N++L G+M E + K M E GF+ +++ + + GK +E ++ M+
Sbjct: 411 FNTLLHGYCKFGKMEEAFLLQKVMLEKGFLPNASTYNCLIVGFCREGKMEEVKNLLNEMQ 470
Query: 471 ASG------------------------SDVGDKM-----------WVSLIKGHCVAGDLD 495
G + + D+M + L+ G+C+ G+L
Sbjct: 471 CRGVKADTVTYNILISAWCEKKEPKKAARLIDEMLDKGLKPSHLTYNILLNGYCMEGNL- 529
Query: 496 KAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEE 555
+AA +K +EKEG ++L+ YC K + DA + N + E L P TTY E
Sbjct: 530 RAALNLRKQMEKEGRWANVVTYNVLIQGYCRKGKLEDANGLL-NEMLEKGLIPNRTTY-E 587
Query: 556 LIKNLLVQRGF 566
+IK ++++GF
Sbjct: 588 IIKEEMMEKGF 598
Score = 42.7 bits (99), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 66/290 (22%), Positives = 111/290 (38%), Gaps = 59/290 (20%)
Query: 427 CNKILKAM----EEGG--FIASSNMKSKIAFRLSS----------AGKKDEANEFMDHME 470
CN +L A+ E GG F+ ++ KI+ L + GK ++A + +D M+
Sbjct: 198 CNPLLSALVKENEFGGVEFVYKEMIRRKISPNLITFNTVINGLCKVGKLNKAGDVVDDMK 257
Query: 471 ASGSDVGDKMWVSLIKGHCVAGDLDKA--ADCFQKMVEKEGTSHAGYAIDLLVNTYCSKN 528
G + +LI G+C G + K AD K + + S ++L++ +C K+
Sbjct: 258 VWGFWPNVVTYNTLIDGYCKMGRVGKMYKADAILKEMVENKVSPNSVTFNVLIDGFC-KD 316
Query: 529 RAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPP----- 583
+ A V ++ LKP TY L+ L + +A LL M P
Sbjct: 317 ENLSAALKVFEEMQSQGLKPTVVTYNSLVNGLCNEGKLNEAKVLLDEMLSSNLKPNVITY 376
Query: 584 --FVDPFIK------------YVSKSGTSDDAIAF-------------------LKGMTS 610
++ + K + K G + + I F K M
Sbjct: 377 NALINGYCKKKLLEEARELFDNIGKQGLTPNVITFNTLLHGYCKFGKMEEAFLLQKVMLE 436
Query: 611 KRF-PSMSVVLCLFAAFFQARRHSEAQDLLSKCP-RYVRNHADVLNLLYS 658
K F P+ S CL F + + E ++LL++ R V+ N+L S
Sbjct: 437 KGFLPNASTYNCLIVGFCREGKMEEVKNLLNEMQCRGVKADTVTYNILIS 486
>gi|302142099|emb|CBI19302.3| unnamed protein product [Vitis vinifera]
Length = 609
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 79/350 (22%), Positives = 143/350 (40%), Gaps = 13/350 (3%)
Query: 302 SSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEF 361
S ++ +E + + K+LDEMR+KG + ++ T ++ + + EA+
Sbjct: 83 SGFSFYVQTTCKESGVGQAMKLLDEMRNKGSKPDVVTYNVLINGICKEGRLDEAIKFLNN 142
Query: 362 AMACKNKPSVNCCTFLLRKIV-VSKQLDM-RLFSKVVRVFRENGNVLTDAMLNSVLKALI 419
+ +P+V +LR + + +D +L S ++R G + N ++ L
Sbjct: 143 MPSYGCQPNVITHNIILRSMCSTGRWMDAEKLLSDMLR----KGCSPSVVTFNILINFLC 198
Query: 420 SVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDK 479
G +G IL+ M G +S + + K D A E++D M + G
Sbjct: 199 RQGLLGRAIDILEKMPMHGCTPNSLSYNPLLHGFCKEKKMDRAIEYLDIMVSRGCYPDIV 258
Query: 480 MWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHN 539
+ +L+ C G +D A + ++ K G S + +++ + A K +
Sbjct: 259 TYNTLLTALCKDGKVDVAVEILNQLSSK-GCSPVLITYNTVIDGLSKVGKTERAIKLLDE 317
Query: 540 CVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPP---FVDPFIKYVSKSG 596
+R LKP TY L+ L + +A+ ++ G P + + + KS
Sbjct: 318 -MRRKGLKPDIITYSSLVSGLSREGKVDEAIKFFHDLEGLGIRPNAITYNSIMLGLCKSR 376
Query: 597 TSDDAIAFLKGMTSKRF-PSMSVVLCLFAAFFQARRHSEAQDLLSK-CPR 644
+D AI FL M SKR P+ + L EA DLL++ C R
Sbjct: 377 QTDRAIDFLAYMISKRCKPTEATYTILIEGIAYEGLAKEALDLLNELCSR 426
>gi|302791141|ref|XP_002977337.1| hypothetical protein SELMODRAFT_107186 [Selaginella moellendorffii]
gi|300154707|gb|EFJ21341.1| hypothetical protein SELMODRAFT_107186 [Selaginella moellendorffii]
Length = 636
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 82/361 (22%), Positives = 143/361 (39%), Gaps = 13/361 (3%)
Query: 287 FFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRF 346
FR E+G + + +YN + S L R +D +++LDEMR +G + + + ++
Sbjct: 99 LFRQMVENGCMPN-LVTYNTLLSGLCRNGLMDEAYELLDEMRERGLQPDKFSYDTLMAGL 157
Query: 347 SERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLD--MRLFSKVVRVFRENGN 404
+ + A+ ++E P V + L+ + + +LD +LF K+ REN
Sbjct: 158 CKTGKIDMALKVFEDNSNGDCPPDVVAYSTLIAGLCKTGRLDEACKLFEKM----RENSC 213
Query: 405 VLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANE 464
+++ L R+ E ++L+ ME+ + S + L G+ +A E
Sbjct: 214 EPDVVTFTALMDGLCKGDRLQEAQQVLETMEDRNCTPNVITYSSLIDGLCKTGQVRDAQE 273
Query: 465 FMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTY 524
M G + + SLI G C+ +D A ++M G + L++
Sbjct: 274 VFKRMIVRGIEPNVVTYNSLIHGFCMTNGVDSALLLMEEMTAT-GCLPDIITYNTLIDGL 332
Query: 525 CSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPF 584
C RA +A + + ++ P TY LI A +L M P
Sbjct: 333 CKTGRAPEANRLFGDMKAKF-CNPDVITYSCLIGGFCKLERIDMARTLFDDMLKQAVLPD 391
Query: 585 VDPFIKYVS---KSGTSDDAIAFLKGM-TSKRFPSMSVVLCLFAAFFQARRHSEAQDLLS 640
V F V +G DDA L+ M S P + L F + R EA+ +L
Sbjct: 392 VVTFSTLVEGYCNAGLVDDAERLLEEMVASDCSPDVYTYTSLVDGFCKVGRMVEARRVLK 451
Query: 641 K 641
+
Sbjct: 452 R 452
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/162 (23%), Positives = 70/162 (43%), Gaps = 1/162 (0%)
Query: 412 NSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEA 471
S++ VGRM E ++LK M + G + + + AGK A + ++ M
Sbjct: 431 TSLVDGFCKVGRMVEARRVLKRMAKRGCQPNVVTYTALIDAFCRAGKPTVAYKLLEEMVG 490
Query: 472 SGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAI 531
+G + SLI G C GDL++A +++ E +A ++++ C R
Sbjct: 491 NGVQPNVITYRSLIGGFCGTGDLEEARKMLERLERDENCKADMFAYRVMMDGLCRTGRMS 550
Query: 532 DACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLL 573
A + + +++ P H Y LI+ L + A+ +L
Sbjct: 551 AALELLEA-IKQSGTPPRHDIYVALIRGLCQGKELGKAMEVL 591
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 75/361 (20%), Positives = 141/361 (39%), Gaps = 11/361 (3%)
Query: 283 KALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKV 342
+A +F ++ G V + E +YN + + + + R + +L EM+ G + T V
Sbjct: 25 EATTYFAKMKKKGTVPN-EWTYNVLINGFCKVHKVHRAYLLLKEMKESGLAPNVVTYSTV 83
Query: 343 LGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFREN 402
+ F + V A L+ + P++ LL + + +D +++ RE
Sbjct: 84 IHGFCRQTKVDTAYKLFRQMVENGCMPNLVTYNTLLSGLCRNGLMDEAY--ELLDEMRER 141
Query: 403 GNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEA 462
G ++++ L G++ K+ + G S + L G+ DEA
Sbjct: 142 GLQPDKFSYDTLMAGLCKTGKIDMALKVFEDNSNGDCPPDVVAYSTLIAGLCKTGRLDEA 201
Query: 463 NEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVN 522
+ + M + + + +L+ G C L +A + M ++ T + L++
Sbjct: 202 CKLFEKMRENSCEPDVVTFTALMDGLCKGDRLQEAQQVLETMEDRNCTPNV-ITYSSLID 260
Query: 523 TYCSKNRAIDACK-FVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGF 581
C + DA + F VR ++P TY LI + G AL L+ M G
Sbjct: 261 GLCKTGQVRDAQEVFKRMIVR--GIEPNVVTYNSLIHGFCMTNGVDSALLLMEEMTATGC 318
Query: 582 PPFV---DPFIKYVSKSGTSDDAIAFLKGMTSKRF-PSMSVVLCLFAAFFQARRHSEAQD 637
P + + I + K+G + +A M +K P + CL F + R A+
Sbjct: 319 LPDIITYNTLIDGLCKTGRAPEANRLFGDMKAKFCNPDVITYSCLIGGFCKLERIDMART 378
Query: 638 L 638
L
Sbjct: 379 L 379
Score = 49.7 bits (117), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 94/440 (21%), Positives = 173/440 (39%), Gaps = 47/440 (10%)
Query: 166 TYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRNKMTEKFEKEGLESDLEKLKGIF 225
TYN +L + +GL+ E + L+D M+++G +KF + L + G+
Sbjct: 114 TYNTLLSGLCRNGLMDEAYELLDEMRERGL---------QPDKFSYDTL------MAGLC 158
Query: 226 ATGSIDNSIEKVASRICKVVRSDIWGD---DVERQLRDLNVTFSNDLVKFVVDKLGDEPK 282
TG ID ++ KV + GD DV V +S + DE
Sbjct: 159 KTGKIDMAL--------KVFEDNSNGDCPPDV--------VAYSTLIAGLCKTGRLDEAC 202
Query: 283 KALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKV 342
K +F + E S + D ++ A+ L + D + +VL+ M + + T +
Sbjct: 203 K--LFEKMRENS--CEPDVVTFTALMDGLCKGDRLQEAQQVLETMEDRNCTPNVITYSSL 258
Query: 343 LGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFREN 402
+ + V++A ++++ + +P+V L+ ++ +D L ++
Sbjct: 259 IDGLCKTGQVRDAQEVFKRMIVRGIEPNVVTYNSLIHGFCMTNGVDSALL--LMEEMTAT 316
Query: 403 GNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEA 462
G + N+++ L GR E N++ M+ S + + D A
Sbjct: 317 GCLPDIITYNTLIDGLCKTGRAPEANRLFGDMKAKFCNPDVITYSCLIGGFCKLERIDMA 376
Query: 463 NEFMDHM--EASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLL 520
D M +A DV + +L++G+C AG +D A ++MV + + Y L
Sbjct: 377 RTLFDDMLKQAVLPDV--VTFSTLVEGYCNAGLVDDAERLLEEMVASDCSPDV-YTYTSL 433
Query: 521 VNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHG 580
V+ +C R ++A + + + +P TY LI A LL M +G
Sbjct: 434 VDGFCKVGRMVEARRVLKRMAKR-GCQPNVVTYTALIDAFCRAGKPTVAYKLLEEMVGNG 492
Query: 581 FPPFVDPFIKYVSK-SGTSD 599
P V + + GT D
Sbjct: 493 VQPNVITYRSLIGGFCGTGD 512
>gi|242045792|ref|XP_002460767.1| hypothetical protein SORBIDRAFT_02g034620 [Sorghum bicolor]
gi|241924144|gb|EER97288.1| hypothetical protein SORBIDRAFT_02g034620 [Sorghum bicolor]
Length = 762
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 106/485 (21%), Positives = 187/485 (38%), Gaps = 73/485 (15%)
Query: 145 DEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLVDVMKKK----GYGVASH 200
DEA F + +K + +YN++L+++ G V++ L D M YG+ H
Sbjct: 248 DEAIELFQGLPDK-----NVCSYNILLKVLCGAGRVEDARQLFDEMASPPDVVTYGILIH 302
Query: 201 VRNKMTEKFEKEGLESDLEKLKGIFATGSIDNSIEKVASRICKVVRSDIWGDDVERQLRD 260
G A G ++N+++ + DD+ + +
Sbjct: 303 ----------------------GYCALGELENAVKLL--------------DDMVARGVE 326
Query: 261 LNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKH----DESSYNA-MASVLGRED 315
N T +V + DK AL V H DE+ Y ++ + D
Sbjct: 327 PNATVYTSVVALLCDK--GRVSDALTVVE-----DMVHHKVILDEAVYTTVLSGFCNKGD 379
Query: 316 CID-RFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCC 374
+ R W DEM+ KG + T ++ +KEA + + +A + V+
Sbjct: 380 LVSARRW--FDEMQRKGLATDGVTYTTLINGLCRAGELKEAEKVLQEMLA--RRLDVDEV 435
Query: 375 TFLLRKIVVSKQLDMRLFSKVVRVFRENG---NVLTDAMLNSVLKALISVGRMGECNKIL 431
T+ + K+ M +V + G NV+T L+ L G + N++L
Sbjct: 436 TYTVLVDGYCKRGKMAEAFQVHNTMVQRGVAPNVVTYTALSD---GLCKQGDVQAANELL 492
Query: 432 KAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVA 491
M G ++ + + L AG D+A M M+A+G + +LI C +
Sbjct: 493 HEMSNKGLELNACTYNSLINGLCKAGYLDQAMRTMADMDAAGLKPDVYTYTTLIDALCKS 552
Query: 492 GDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHT 551
G+LD+A D Q+M++ G ++L+N +C R ++ K + + E ++ P T
Sbjct: 553 GELDRAHDLLQEMLDN-GIKPTIVTYNVLMNGFCMSGR-VEGGKKLLEWMLEKNIHPNAT 610
Query: 552 TYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPF---IKYVSKSGTSDDAIAFLKGM 608
TY L+K + K + M P + + IK K+ + +A F M
Sbjct: 611 TYNSLMKQYCIGNNMKSTTEIYKGMCSRNVEPNENTYNILIKGHCKARSMKEAQYFHNEM 670
Query: 609 TSKRF 613
K F
Sbjct: 671 IEKGF 675
>gi|449491189|ref|XP_004158824.1| PREDICTED: pentatricopeptide repeat-containing protein At1g80550,
mitochondrial-like [Cucumis sativus]
Length = 450
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 71/342 (20%), Positives = 139/342 (40%), Gaps = 14/342 (4%)
Query: 259 RDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCID 318
R + F V+ +D ++ K++ FF W E H +YN M +LG+ D
Sbjct: 39 RPTHTNFDPFTVREALDSYCNDWKRSYEFFNWVESECKFDHTTETYNRMLDILGKFFEFD 98
Query: 319 RFWKVLDEMRSKGYEMEMETCVKVL-GRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFL 377
W +++ MR ++L R++ ++V EA+ YE K + + C L
Sbjct: 99 LSWVLINRMRQSPSASPDHATFRILFKRYALAHLVSEAIAAYERLREFKLRDETSFCN-L 157
Query: 378 LRKIVVSKQLDMRLFSKVVRVFRENGNVLTDA---MLNSVLKALISVGRMGECNKILKAM 434
+ + S+ +D F +N + D+ + N +L+ + +G +C + M
Sbjct: 158 IDALCESRHVD----EAQELCFGKNRKLDCDSSTKIHNLILRGWLKMGWWSKCRDFWEEM 213
Query: 435 EEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDL 494
++ G + S +GK +A + M+ G + + ++I ++ +
Sbjct: 214 DKKGVRKDLHSYSIYMDIQCKSGKPWKAVKLYKEMKKKGMKLDVVAYNTVIHAVGISEGV 273
Query: 495 DKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYE 554
D A+ F +M E G + ++ +C R DA + ++ D +P TY
Sbjct: 274 DFASRVFHEMKEM-GCKPNVVTCNTVIKLFCENGRFKDAHMMLDQMLKR-DCQPNVITYH 331
Query: 555 ELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPFIKYVSKSG 596
++L K+ L L M +G P +D ++ + K G
Sbjct: 332 CFFRSL---EKPKEILVLFDRMIKYGVHPKMDTYVMLLRKFG 370
>gi|147798989|emb|CAN61637.1| hypothetical protein VITISV_008458 [Vitis vinifera]
Length = 708
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 81/367 (22%), Positives = 139/367 (37%), Gaps = 28/367 (7%)
Query: 264 TFSNDLVKFVVDKLGDEPKK--ALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFW 321
+ ++D VV L DE AL F WA +H Y A+ L ++R
Sbjct: 95 SLTHDQAITVVASLADEAGSMVALSFLYWAIGFPKFRHFMRLYIVSATALIGNKNLERAN 154
Query: 322 KVLD--------------------EMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEF 361
+V+ EM+++G +T VL +V+ A ++ F
Sbjct: 155 EVMQCMVMNFAENGKLKEAVNMVVEMQNQGLVXSTQTLNCVLDVAVGMGLVEIAENM--F 212
Query: 362 AMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISV 421
C+ S +C +F L + + K + E G ++ +A ++ A
Sbjct: 213 VEMCQRGVSPDCVSFKLMVVACCNMGRVLEAEKWLNAMVERGFIVDNATCTLIIDAFCQK 272
Query: 422 GRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMW 481
G + M E G + + + L G +A E ++ M G
Sbjct: 273 GYVNRVVGYFWKMVEMGLAPNVINFTALINGLCKQGSIKQAFELLEEMVRRGWKPNVYTH 332
Query: 482 VSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCV 541
+LI G C G +KA F K+V +G + ++N YC +++ ++ + + + +
Sbjct: 333 TTLIDGLCKKGWTEKAFRLFLKLVRSDGYKPNVHTYTAMINGYCKEDK-LNRAEMLLSRM 391
Query: 542 REYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFV---DPFIKYVSKSGTS 598
+E L P TY LI F A L+ LM GF P + + I + K G+
Sbjct: 392 QEQGLVPNTNTYTTLIDGHCKVGNFVRAYELMDLMGKEGFSPNIYTYNAIIDGLCKKGSL 451
Query: 599 DDAIAFL 605
D+A L
Sbjct: 452 DEAYRLL 458
Score = 49.3 bits (116), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 73/335 (21%), Positives = 135/335 (40%), Gaps = 35/335 (10%)
Query: 293 ESGFVKHDESSYNAMASVLGREDCIDR----FWKVLDEMRSKGYEMEMETCVKVLGRFSE 348
E GF+ D ++ + ++ ++R FWK+++ G + ++ +
Sbjct: 252 ERGFIV-DNATCTLIIDAFCQKGYVNRVVGYFWKMVE----MGLAPNVINFTALINGLCK 306
Query: 349 RNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLD--MRLFSKVVRVFRENGNVL 406
+ +K+A +L E + KP+V T L+ + + RLF K+VR NV
Sbjct: 307 QGSIKQAFELLEEMVRRGWKPNVYTHTTLIDGLCKKGWTEKAFRLFLKLVRSDGYKPNVH 366
Query: 407 T-DAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEF 465
T AM+N K ++ +L M+E G + ++N + + G A E
Sbjct: 367 TYTAMINGYCKE----DKLNRAEMLLSRMQEQGLVPNTNTYTTLIDGHCKVGNFVRAYEL 422
Query: 466 MDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYC 525
MD M G + ++I G C G LD+A K V G G +L++ +C
Sbjct: 423 MDLMGKEGFSPNIYTYNAIIDGLCKKGSLDEAYRLLNK-VSVHGLQADGVTYTILMSVHC 481
Query: 526 SK---NRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQ-------RGFKDALSLLCL 575
+ NR++ N + + P +Y LI Q R F++A+SL +
Sbjct: 482 RQADTNRSL----VFFNKMLKVGFTPDIHSYTTLISXFCRQKQMKESERLFEEAVSLGLI 537
Query: 576 MKDHGFPPFVDPFIKYVSKSGTSDDAIAFLKGMTS 610
+ + + +Y G + A+ + M++
Sbjct: 538 PTKKTYTSMICGYCRY----GNTSLAVKLFQRMSN 568
Score = 38.9 bits (89), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 40/218 (18%), Positives = 90/218 (41%), Gaps = 17/218 (7%)
Query: 297 VKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAV 356
++ D +Y + SV R+ +R ++M G+ ++ + ++ F + +KE+
Sbjct: 466 LQADGVTYTILMSVHCRQADTNRSLVFFNKMLKVGFTPDIHSYTTLISXFCRQKQMKESE 525
Query: 357 DLYEFAMACKNKPSVNCCTFLLRKIVV--SKQLDMRLFSKVVRVFRENGNVLTDAMLNSV 414
L+E A++ P+ T ++ + L ++LF ++ +G ++
Sbjct: 526 RLFEEAVSLGLIPTKKTYTSMICGYCRYGNTSLAVKLFQRM----SNHGCAPDSITYGAL 581
Query: 415 LKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGS 474
+ L ++ + + AM + G + +A+ A +D +E
Sbjct: 582 ISGLCKESKLDDARNLYDAMMDKGLSPCEVTRLTLAYEYCKKDDSSTAINVLDRLE---- 637
Query: 475 DVGDKMWV----SLIKGHCVAGDLDKAADCFQKMVEKE 508
+ W+ +L++ C G LD AA F K+++KE
Sbjct: 638 ---KRQWIRTVNTLVRKLCSEGKLDMAALFFHKLLDKE 672
>gi|15221893|ref|NP_173324.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|42571539|ref|NP_973860.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75151479|sp|Q8GYP6.1|PPR49_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g18900
gi|26450017|dbj|BAC42129.1| unknown protein [Arabidopsis thaliana]
gi|28827402|gb|AAO50545.1| unknown protein [Arabidopsis thaliana]
gi|332191657|gb|AEE29778.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|332191658|gb|AEE29779.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 860
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 103/468 (22%), Positives = 180/468 (38%), Gaps = 39/468 (8%)
Query: 206 TEKFEKEGL-ESDLEKLKGIFATGSIDNSI---EKVASRICKVVRSDIWGDDVERQLRDL 261
+ +F G S +E +KG T + + V+R WG E L++L
Sbjct: 266 SNRFVPSGFSNSSVEMMKGPSGTALTSRQYCNSGHIVENVSSVLRRFRWGPAAEEALQNL 325
Query: 262 NVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFW 321
+ V+ ++ D AL FF W + KHD +Y M LGR
Sbjct: 326 GLRIDAYQANQVLKQMNDY-GNALGFFYWLKRQPGFKHDGHTYTTMVGNLGRAKQFGAIN 384
Query: 322 KVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPS-VNCCTFL-LR 379
K+LDEM G + T +++ + N + EA++++ KP V CT + +
Sbjct: 385 KLLDEMVRDGCQPNTVTYNRLIHSYGRANYLNEAMNVFNQMQEAGCKPDRVTYCTLIDIH 444
Query: 380 KIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSV-LKALISVGRMGECNKILKAMEEGG 438
+ M ++ ++ + G + D SV + L G + +K+ M + G
Sbjct: 445 AKAGFLDIAMDMYQRM-----QAGGLSPDTFTYSVIINCLGKAGHLPAAHKLFCEMVDQG 499
Query: 439 FIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIK---GHCVAGDLD 495
+ + + + A A + M+ +G + DK+ S++ GHC G L+
Sbjct: 500 CTPNLVTYNIMMDLHAKARNYQNALKLYRDMQNAGFEP-DKVTYSIVMEVLGHC--GYLE 556
Query: 496 KAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEE 555
+A F +M +K LLV+ + A ++ + + L+P T
Sbjct: 557 EAEAVFTEMQQKNWIPDEP-VYGLLVDLWGKAGNVEKAWQW-YQAMLHAGLRPNVPTCNS 614
Query: 556 LIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPFIKYVS--KSGTSDDAIAFL-KGMTSKR 612
L+ L +A LL M G P + + +S G S + F + M S
Sbjct: 615 LLSTFLRVNKIAEAYELLQNMLALGLRPSLQTYTLLLSCCTDGRSKLDMGFCGQLMASTG 674
Query: 613 FPSMSVVLCLFAAFFQARRHSEAQDLLSKCPRYVRNHA-DVLNLLYSK 659
P+ +L + AA VRNHA + L+L++S+
Sbjct: 675 HPAHMFLLKMPAAGPDGEN--------------VRNHANNFLDLMHSE 708
>gi|297844018|ref|XP_002889890.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297335732|gb|EFH66149.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 657
Score = 60.8 bits (146), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 109/491 (22%), Positives = 180/491 (36%), Gaps = 63/491 (12%)
Query: 128 FTHEMVLKVLKNLESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLV 187
T+ ++ +VL+ SSP A F+NWVLE + S + V +H LV W
Sbjct: 55 LTNPLISRVLRQFRSSPKLALEFYNWVLENNTVAKSENRFEA--SCVMIHLLVD--WRRF 110
Query: 188 DVMKKKGYGVASHVRNKMTEKFEKEGLESDLEKLKGIFATGSIDNSIEKVASRICKVVRS 247
D + M EG EKL + + S + S +
Sbjct: 111 D-----------DALSIMVNLMSVEG-----EKLSPLHVLSGLIRSYQACGSSL------ 148
Query: 248 DIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAM 307
D++ + LV+ GD + A GF + N M
Sbjct: 149 DVF----------------DSLVRACTQN-GD-AQGAYEVIEQTRTEGFWVSVHALNNFM 190
Query: 308 ASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKN 367
+L + ID FW V EM S GY + T V+ F + N + EA+ ++ + C
Sbjct: 191 GCLLNLNE-IDWFWMVYKEMDSLGYVENVNTFNLVIYSFCKENKLFEALSVFYRMLKCGI 249
Query: 368 KPSVNCCTFLLRKIVVSKQLDMRLFSKVV-RVFRENGNVLTDAML--NSVLKALISVGRM 424
P N +F + K DMR +++ ++ +GN ++ + NSV+ GR+
Sbjct: 250 WP--NVVSFNMMIDGACKTGDMRFALQLLGKMGVMSGNFVSPNAVTYNSVINGFCKAGRL 307
Query: 425 GECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSL 484
+I M + G + + AG DEA D M + G ++ S+
Sbjct: 308 DLAERIRGEMVKLGVDCNERTYGALVDAYGRAGSSDEALRLCDEMTSKGLVANTVIYNSI 367
Query: 485 IKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREY 544
+ + GD + A + MV K G+ ++V C +A +F H + E
Sbjct: 368 VYWLFMEGDTEGAMMVLRDMVRKR-MQIDGFTRAIVVRGLCRNGYVAEAVEF-HRQISEK 425
Query: 545 DLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHG-------FPPFVDPFIKYVSKSGT 597
L + L+ + + + +L M HG F +D ++ K G
Sbjct: 426 KLVEDIVCHNTLMHHFVRDKKLVCVDQILGSMLVHGLGLDTILFGTLIDGYL----KEGK 481
Query: 598 SDDAIAFLKGM 608
+ AI GM
Sbjct: 482 LERAIDIYDGM 492
Score = 39.3 bits (90), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 76/365 (20%), Positives = 144/365 (39%), Gaps = 52/365 (14%)
Query: 258 LRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCI 317
L + + +N L+ V+ + PK AL F+ W E+ V E+ + A ++ +
Sbjct: 48 LHQFSSSLTNPLISRVLRQFRSSPKLALEFYNWVLENNTVAKSENRFEASCVMI--HLLV 105
Query: 318 DRFWKVLDEMRSKGYEMEMETCVKVLG-RFSERNMVKEAVDLYEFAMACKNKPSVNCCTF 376
D W+ D+ S M + V G + S +++ + Y+ AC + S++
Sbjct: 106 D--WRRFDDALSI-----MVNLMSVEGEKLSPLHVLSGLIRSYQ---ACGS--SLDVFDS 153
Query: 377 LLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEE 436
L+R ++ D + +V+ R G ++ LN+ + L+++ + + K M+
Sbjct: 154 LVR--ACTQNGDAQGAYEVIEQTRTEGFWVSVHALNNFMGCLLNLNEIDWFWMVYKEMDS 211
Query: 437 GGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDK 496
G++ + N + + + K EA M G + +I G C GD+
Sbjct: 212 LGYVENVNTFNLVIYSFCKENKLFEALSVFYRMLKCGIWPNVVSFNMMIDGACKTGDMRF 271
Query: 497 AADCFQKMVEKEG--TSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYE 554
A KM G S + ++N +C R DL
Sbjct: 272 ALQLLGKMGVMSGNFVSPNAVTYNSVINGFCKAGR--------------LDLA------- 310
Query: 555 ELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPFIKYVSKSGTSDDAIAFLKGMTSKRFP 614
E I+ +V+ G C + +G VD + ++G+SD+A+ MTSK
Sbjct: 311 ERIRGEMVKLGVD------CNERTYG--ALVDAY----GRAGSSDEALRLCDEMTSKGLV 358
Query: 615 SMSVV 619
+ +V+
Sbjct: 359 ANTVI 363
>gi|449477323|ref|XP_004154991.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At1g18900-like [Cucumis sativus]
Length = 874
Score = 60.8 bits (146), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 90/379 (23%), Positives = 158/379 (41%), Gaps = 30/379 (7%)
Query: 227 TGSIDNSIEKVASRICKVVRSDIWGDDVERQLRDLNVTF----SNDLVKFVVDKLGDEPK 282
T S N+ V S C +++ WG E + LN + +N ++K V D+
Sbjct: 307 TSSFLNAPNVVESVSC-ILQQLKWGPAAEEAIGKLNCSIDAYQANQILKRV-----DDHA 360
Query: 283 KALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKV 342
AL FF W + +HD +Y M +LGR K+LD+M G + + T ++
Sbjct: 361 VALGFFYWLKRLPRFRHDGHTYTTMIGLLGRAKQFAAINKLLDQMIKDGCQPNVVTYNRI 420
Query: 343 LGRFSERNMVKEAVDLYEFAMACKNKPS-VNCCTFLLRKIVVSKQLD--MRLFSKVVRVF 399
+ + N +++AV++++ +P V CT L+ S LD M ++ K+
Sbjct: 421 IHSYGRANYLQDAVNVFKQMQEAGCEPDRVTYCT-LIDIHAKSGFLDVAMGMYEKM---- 475
Query: 400 RENGNVLTDAMLNSVL-KALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGK 458
++ + D SV+ L G + +++ M + G + + + I L + +
Sbjct: 476 -QDAGLTPDTFTYSVMINCLGKAGHLNAAHRLFCRMVDEGCVPNL-VTYNIMIALQAKAR 533
Query: 459 KDE-ANEFMDHMEASGSDVGDKMWVSLIK---GHCVAGDLDKAADCFQKMVEKEGTSHAG 514
E A + M+ SG + DK+ ++ GHC G L++A F +M +K
Sbjct: 534 NYEIALKLYRDMQQSGFEP-DKVTYCIVMEVLGHC--GFLEEAEGIFIEMQKKNWVPDEP 590
Query: 515 YAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLC 574
LLV+ + A ++ H ++ LKP T L+ L DA LL
Sbjct: 591 -VYGLLVDLWGKSGNVQKAWEWYHAMLKA-GLKPNVPTCNSLLSAFLRVHQLSDAYQLLQ 648
Query: 575 LMKDHGFPPFVDPFIKYVS 593
M G P + + +S
Sbjct: 649 SMLTFGLKPSLQTYTLLLS 667
>gi|357150350|ref|XP_003575429.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g16890, mitochondrial-like [Brachypodium distachyon]
Length = 684
Score = 60.5 bits (145), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 46/208 (22%), Positives = 93/208 (44%), Gaps = 6/208 (2%)
Query: 393 SKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFR 452
+++++ RE G + N+++ +G + +LK + E G I + +
Sbjct: 441 AEIIKEMREKGVLPNLVTFNTLISGYSKLGNVHNAKAVLKMLMEHGLIPDIITFTSLING 500
Query: 453 LSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSH 512
L + D+A + + M G + L+ C AG ++KA D KM +K+G +
Sbjct: 501 LCHTHQLDDAFDCFNEMAEWGVRPNAHTYNVLMHALCSAGHVNKAIDLLNKM-KKDGITP 559
Query: 513 AGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSL 572
Y+ + + ++C + + +D + + N + + P + TY LIK L +R +A +
Sbjct: 560 DAYSFNAPILSFC-RMKKVDKARNIFNAMLRLGVVPDNYTYNSLIKALCDERRIDEAKEI 618
Query: 573 LCLMKDHGFPPFVD----PFIKYVSKSG 596
L LM+ G P + ++K+G
Sbjct: 619 LLLMESSGSSATTHHTHLPIVSALTKTG 646
Score = 43.1 bits (100), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 48/207 (23%), Positives = 86/207 (41%), Gaps = 9/207 (4%)
Query: 414 VLKALI-SVGRMG---ECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHM 469
+L+ALI S GR+G +++ M G S+ + + + AG D A M
Sbjct: 143 LLRALIASWGRLGLAQYAHEVFVQMPRLGLRPSTAVYNALIVASVRAGAVDTAYLRFQQM 202
Query: 470 EASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNR 529
A G + +L+ G C G +D+A ++M E G + +LV+ +C+ R
Sbjct: 203 PADGCQPDCFTYNTLVHGVCQRGIIDEALRLVRQM-EGAGIRPNVFTYTMLVDGFCNAGR 261
Query: 530 AIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPF- 588
DA V + ++E + P +Y L+ G A +L PP +
Sbjct: 262 PEDAVH-VFDTMKEKGVSPNEASYRTLVHGAFRCLGRHKAYVMLTEWLGREPPPHHSAWQ 320
Query: 589 --IKYVSKSGTSDDAIAFLKGMTSKRF 613
+ +SK+ + + + K M S+ +
Sbjct: 321 CMLYCLSKNEMAKEVVEVTKKMNSRGY 347
Score = 40.0 bits (92), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 49/230 (21%), Positives = 93/230 (40%), Gaps = 9/230 (3%)
Query: 302 SSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEF 361
+SYN + + +D+ +++ EMR KG + T ++ +S+ V A + +
Sbjct: 422 TSYNMVIDCFVKAGAVDKAAEIIKEMREKGVLPNLVTFNTLISGYSKLGNVHNAKAVLKM 481
Query: 362 AMACKNKPSVNCCTFLLRKIVVSKQLD--MRLFSKVVR-VFRENGNVLTDAMLNSVLKAL 418
M P + T L+ + + QLD F+++ R N + N ++ AL
Sbjct: 482 LMEHGLIPDIITFTSLINGLCHTHQLDDAFDCFNEMAEWGVRPNAHT-----YNVLMHAL 536
Query: 419 ISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGD 478
S G + + +L M++ G + + K D+A + M G +
Sbjct: 537 CSAGHVNKAIDLLNKMKKDGITPDAYSFNAPILSFCRMKKVDKARNIFNAMLRLGVVPDN 596
Query: 479 KMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKN 528
+ SLIK C +D+A + M E G+S + L + + +K
Sbjct: 597 YTYNSLIKALCDERRIDEAKEILLLM-ESSGSSATTHHTHLPIVSALTKT 645
>gi|255660938|gb|ACU25638.1| pentatricopeptide repeat-containing protein [Citharexylum
montevidense]
Length = 481
Score = 60.5 bits (145), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 81/393 (20%), Positives = 159/393 (40%), Gaps = 53/393 (13%)
Query: 258 LRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCI 317
+R+L +F ++LV V+ + + AL FFRW Z S +H+ ++ + +LGR +
Sbjct: 3 IRNLVPSFDHELVYNVLHG-AKKSEHALQFFRWVZRSNLFEHNRETHLKIIEILGRASKL 61
Query: 318 DRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFL 377
+ +L +M KG + + + V ++ + + +V+E+V
Sbjct: 62 NHARCILLDMPKKGLQWDEDLWVLMIDSYGKAGIVQESV--------------------- 100
Query: 378 LRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEG 437
+LF K+ E G T + + K ++ GR + M
Sbjct: 101 ------------KLFHKM----EELGVERTIKSYDVLFKVILRRGRYMMAKRYFNKMLSE 144
Query: 438 GFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKA 497
G + + + + + +GK + A F + M++ + ++I G+ +++A
Sbjct: 145 GIEPTRHTFNIMIWGFFLSGKVETAXRFFEDMKSRDITPDVITYNTMINGYYRVKKMEEA 204
Query: 498 ADCFQKM----VEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTY 553
F +M +E +H L+ Y + +R DA + V ++ + +KP TY
Sbjct: 205 EKYFVEMKGRNIEPTVVTHTT-----LIKGYVAVDRVDDALRLVEE-MKGFGIKPNAITY 258
Query: 554 EELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDP-FIKYVS---KSGTSDDAIAFLKGMT 609
+ L +A S L M D P + F++ +S K+G D A LK M
Sbjct: 259 STXLPGLCNAEKMSEARSXLKEMVDKYIAPTDNSIFLRLISGQCKAGNLDAAADVLKAMI 318
Query: 610 SKRFPSMSVVL-CLFAAFFQARRHSEAQDLLSK 641
P+ + L + +A ++ +A LL K
Sbjct: 319 RLSVPTEAGHYGVLIENYCKAVQYDKAISLLDK 351
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 52/227 (22%), Positives = 99/227 (43%), Gaps = 37/227 (16%)
Query: 412 NSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHM-E 470
+++K ++V R+ + ++++ M+ G ++ S L +A K EA + M +
Sbjct: 224 TTLIKGYVAVDRVDDALRLVEEMKGFGIKPNAITYSTXLPGLCNAEKMSEARSXLKEMVD 283
Query: 471 ASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRA 530
+ + +++ LI G C AG+LD AAD + M+ + AG+ +L+ YC +
Sbjct: 284 KYIAPTDNSIFLRLISGQCKAGNLDAAADVLKAMIRLSVPTEAGH-YGVLIENYCKAVQY 342
Query: 531 IDACKFVHNCV-REYDLKPWHTT------YEELIKNL---------------LVQRGFKD 568
A + + ++ L+P T+ Y LI+ L L++ G +D
Sbjct: 343 DKAISLLDKLIEKDIILRPQSTSHMEPSAYNPLIEYLCNNGQTAKAETLVRQLMKLGVQD 402
Query: 569 ALSLLCLMKDHGFPPFVDPFIKYVSKSGTSDDAIAFLKGMTSKRFPS 615
A +L L++ H S+ G+ D A LK M ++ S
Sbjct: 403 ATALNTLIRGH-------------SQEGSPDSAFELLKIMLRRKXDS 436
>gi|255538538|ref|XP_002510334.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223551035|gb|EEF52521.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 947
Score = 60.5 bits (145), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 94/440 (21%), Positives = 175/440 (39%), Gaps = 75/440 (17%)
Query: 258 LRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCI 317
L+DLN FS+ ++ V+ KL P +L FF+ A + + + +S+ + +L R
Sbjct: 51 LKDLNFQFSDYILDSVLLKLKFNPIASLHFFKLASKQSNFRPNVNSHCKLVHILSRARMY 110
Query: 318 DRFWKVLDEMRS-------------------KGYEMEMETCVKVLGRFSERNMVKEAVDL 358
D L+E+ + + ++ +L + E+ M+K A+ +
Sbjct: 111 DETRSYLNELVTPSKNNYSSLVVWNELVRVFEDFKFSPTVFDMILKIYCEKGMIKNALHV 170
Query: 359 YEFAMACKNKPSVNCCTFLLRKIVVSKQ-----------------LDMRLFSKVVRVFRE 401
++ PS+ C LL +V + D+ S +V + +
Sbjct: 171 FDNMGKLGCVPSLRSCNRLLSSLVRKGESSNAILVYDHINRLGIVPDVFTCSIMVNAYCK 230
Query: 402 NG--NVLTD--------------AMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNM 445
+G NV D NS++ +S+G M +LK M E G +
Sbjct: 231 DGWVNVAVDFVKEMDYLGFELNVVTYNSLIDGCVSIGDMERAEMVLKLMGERGI-----L 285
Query: 446 KSKIAFRLSSAG-----KKDEANEFMDHMEASGSDVGDK-MWVSLIKGHCVAGDLDKAAD 499
++K+ L G K +EA + + ME S V D+ + LI G+C +D A
Sbjct: 286 RNKVTLTLLIKGYCRQCKLEEAEKVLREMERSEGMVLDEYAYGVLIDGYCRVCKMDDAVR 345
Query: 500 CFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKN 559
+M+ G + + L+N YC + +A + + V ++DL+P +Y L+
Sbjct: 346 LRDEMLNV-GLRMNLFICNALINGYCKNGQVSEAERLLMRMV-DWDLEPESYSYSTLMDG 403
Query: 560 LLVQRGFKDALSLLCLMKDHGFPPFV---DPFIKYVSKSGTSDDA-----IAFLKGMTSK 611
+ A+S+ M G V + +K + + G +DA + +G+T
Sbjct: 404 FCREGLVTKAISVYNEMLRVGIQSNVVTHNSLLKGLCRVGAFEDALHVWHLMLKRGVTPD 463
Query: 612 RFPSMSVVLCLF--AAFFQA 629
+++ LF FF+A
Sbjct: 464 EVSYCTLLDLLFKMGEFFRA 483
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 50/210 (23%), Positives = 85/210 (40%), Gaps = 4/210 (1%)
Query: 412 NSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEA 471
N + L G++ + KI ++ GF + + S+AG ++A D M
Sbjct: 713 NIAIAGLCKSGKVDDAKKIFSSLLLRGFSPDNFTYCTLIHGYSAAGNVNDAFSLRDEMLK 772
Query: 472 SGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAI 531
G + +LI G C +G+LD+A F K+ K G + + ++L++ YC
Sbjct: 773 RGLAPNIITYNALINGLCKSGNLDRAQKLFDKLHLK-GLAPNVISYNILIDGYCKNGNTR 831
Query: 532 DACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPFIKY 591
+A + ++E + P TY LI Q A +LL M++ + F+K
Sbjct: 832 EALDLRNKMLKE-GISPSLITYSALIYGFCKQGDMGKATNLLDEMRELFADQNIAKFVKL 890
Query: 592 VSKSGTSDDA--IAFLKGMTSKRFPSMSVV 619
V + IA L M P V+
Sbjct: 891 VEGHVKCGEVKKIAKLHNMMHITIPCAGVI 920
>gi|363543233|ref|NP_001241831.1| uncharacterized protein LOC100857030 [Zea mays]
gi|224033903|gb|ACN36027.1| unknown [Zea mays]
Length = 655
Score = 60.5 bits (145), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 65/295 (22%), Positives = 126/295 (42%), Gaps = 16/295 (5%)
Query: 289 RWAEESGFVKH--------DESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCV 340
RW E + D+ ++N + + +DR ++L++M +G ++ T
Sbjct: 347 RWEETEELLAEMFDKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLERGCMPDVITYT 406
Query: 341 KVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQ-LDMR-LFSKVVRV 398
V+ F + ++ EAV L + AC KP+ T +L+ + +++ +D L S+++
Sbjct: 407 TVINGFCKEGLIDEAVMLLKSMTACGCKPNTISYTIVLKGLCSAERWVDAEDLMSQMI-- 464
Query: 399 FRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGK 458
+ G L N+++ L G + + ++LK M G S + L AGK
Sbjct: 465 --QQGCPLNPITFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGK 522
Query: 459 KDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAID 518
DEA E ++ M G ++ S+ G ++K F + + S A +
Sbjct: 523 TDEALELLNVMVNKGMSPNTIIYSSIASALSREGRINKVIQMFDNIQDTTIRSDA-VLYN 581
Query: 519 LLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLL 573
++++ C + A +F+ V P +TY LI+ L + K+A +L
Sbjct: 582 AVISSLCKRGETERAIEFLAYMVSS-GCVPNESTYTILIRGLASEGFVKEAQEML 635
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 77/363 (21%), Positives = 144/363 (39%), Gaps = 53/363 (14%)
Query: 322 KVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKI 381
+VL+++ ++G +++ C VL ++ V EA+ L + +P V +L+ +
Sbjct: 178 RVLEDLHARGCALDVGNCNLVLNAICDQGSVDEALHLLRDLPSFGCEPDVVSYNAVLKGL 237
Query: 382 VVSKQLD--MRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGF 439
++K+ L ++VR+ N++T N+++ L G +++L M E G
Sbjct: 238 CMAKRWGCVQELMEEMVRMACPP-NIVT---FNTLISYLCRNGLFERVHEVLAQMVEHGC 293
Query: 440 IASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVA-------- 491
M + I + G + A+E ++ M + G + +L+KG C A
Sbjct: 294 TPDIRMYATIIDGICKEGHLEVAHEILNRMPSYGLKPNVVCYNTLLKGLCSAERWEETEE 353
Query: 492 ---------------------------GDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTY 524
G +D+ + ++M+E+ G ++N +
Sbjct: 354 LLAEMFDKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLER-GCMPDVITYTTVINGF 412
Query: 525 CSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFP-- 582
C K ID + + KP +Y ++K L + DA L+ M G P
Sbjct: 413 C-KEGLIDEAVMLLKSMTACGCKPNTISYTIVLKGLCSAERWVDAEDLMSQMIQQGCPLN 471
Query: 583 PFV-DPFIKYVSKSGTSDDAIAFLKGM----TSKRFPSMSVVLCLFAAFFQARRHSEAQD 637
P + I ++ K G + AI LK M S S S V+ +A + EA +
Sbjct: 472 PITFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVI---DGLGKAGKTDEALE 528
Query: 638 LLS 640
LL+
Sbjct: 529 LLN 531
Score = 44.3 bits (103), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 65/292 (22%), Positives = 115/292 (39%), Gaps = 26/292 (8%)
Query: 303 SYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFA 362
++N + S L R +R +VL +M G ++ ++ + ++ A ++
Sbjct: 264 TFNTLISYLCRNGLFERVHEVLAQMVEHGCTPDIRMYATIIDGICKEGHLEVAHEILNRM 323
Query: 363 MACKNKPSVNCCTFLLRKIVV------SKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLK 416
+ KP+V C LL+ + +++L +F K + N+L D + L
Sbjct: 324 PSYGLKPNVVCYNTLLKGLCSAERWEETEELLAEMFDKDCPLDDVTFNILVDFFCQNGL- 382
Query: 417 ALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDV 476
V R+ E +L+ M E G + + + G DEA + M A G
Sbjct: 383 ----VDRVIE---LLEQMLERGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMTACGCKP 435
Query: 477 GDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKN---RAIDA 533
+ ++KG C A A D +M++ +G + L+N C K +AI+
Sbjct: 436 NTISYTIVLKGLCSAERWVDAEDLMSQMIQ-QGCPLNPITFNTLINFLCKKGLVEQAIEL 494
Query: 534 CK--FVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPP 583
K V+ C P +Y +I L +AL LL +M + G P
Sbjct: 495 LKQMLVNGC------SPDLISYSTVIDGLGKAGKTDEALELLNVMVNKGMSP 540
>gi|334182677|ref|NP_001185030.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|332191659|gb|AEE29780.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 886
Score = 60.5 bits (145), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 103/468 (22%), Positives = 180/468 (38%), Gaps = 39/468 (8%)
Query: 206 TEKFEKEGL-ESDLEKLKGIFATGSIDNSI---EKVASRICKVVRSDIWGDDVERQLRDL 261
+ +F G S +E +KG T + + V+R WG E L++L
Sbjct: 266 SNRFVPSGFSNSSVEMMKGPSGTALTSRQYCNSGHIVENVSSVLRRFRWGPAAEEALQNL 325
Query: 262 NVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFW 321
+ V+ ++ D AL FF W + KHD +Y M LGR
Sbjct: 326 GLRIDAYQANQVLKQMNDY-GNALGFFYWLKRQPGFKHDGHTYTTMVGNLGRAKQFGAIN 384
Query: 322 KVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPS-VNCCTFL-LR 379
K+LDEM G + T +++ + N + EA++++ KP V CT + +
Sbjct: 385 KLLDEMVRDGCQPNTVTYNRLIHSYGRANYLNEAMNVFNQMQEAGCKPDRVTYCTLIDIH 444
Query: 380 KIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSV-LKALISVGRMGECNKILKAMEEGG 438
+ M ++ ++ + G + D SV + L G + +K+ M + G
Sbjct: 445 AKAGFLDIAMDMYQRM-----QAGGLSPDTFTYSVIINCLGKAGHLPAAHKLFCEMVDQG 499
Query: 439 FIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIK---GHCVAGDLD 495
+ + + + A A + M+ +G + DK+ S++ GHC G L+
Sbjct: 500 CTPNLVTYNIMMDLHAKARNYQNALKLYRDMQNAGFEP-DKVTYSIVMEVLGHC--GYLE 556
Query: 496 KAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEE 555
+A F +M +K LLV+ + A ++ + + L+P T
Sbjct: 557 EAEAVFTEMQQKNWIPDEP-VYGLLVDLWGKAGNVEKAWQW-YQAMLHAGLRPNVPTCNS 614
Query: 556 LIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPFIKYVS--KSGTSDDAIAFL-KGMTSKR 612
L+ L +A LL M G P + + +S G S + F + M S
Sbjct: 615 LLSTFLRVNKIAEAYELLQNMLALGLRPSLQTYTLLLSCCTDGRSKLDMGFCGQLMASTG 674
Query: 613 FPSMSVVLCLFAAFFQARRHSEAQDLLSKCPRYVRNHA-DVLNLLYSK 659
P+ +L + AA VRNHA + L+L++S+
Sbjct: 675 HPAHMFLLKMPAAGPDGEN--------------VRNHANNFLDLMHSE 708
>gi|357484175|ref|XP_003612374.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355513709|gb|AES95332.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 620
Score = 60.5 bits (145), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 96/422 (22%), Positives = 163/422 (38%), Gaps = 52/422 (12%)
Query: 269 LVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEM- 327
L + ++D+ +AL FRWA H +S+Y + L D ++LDEM
Sbjct: 41 LCQLILDQ--KTSSEALQTFRWASTFSKFTHSQSTYRTLIHKLCIFRRFDTVKQLLDEMP 98
Query: 328 RSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQL 387
S G + + ++ S M + + + + A PS+ +L ++V + +
Sbjct: 99 TSIGANPGEDIFITIVRGLSRAGMTRRVITVLDLAYKFHGTPSLKIFNSIL-DVLVKEDI 157
Query: 388 DM-RLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMK 446
DM R F + + E+G D ++K L R+GE K+L+ ++ G ++ +
Sbjct: 158 DMAREFYR--KSMMESGVRGDDYTFGILMKGLCLTNRIGEGFKLLQLIKNNGVTPNTVIY 215
Query: 447 SKIAFRLSSAGKKDEANEFMDHMEASG------------------------------SDV 476
+ + L GK A M+ M S V
Sbjct: 216 NTLLHALCRNGKVGRARSLMNEMVDPNEVTFNILISSYYKEENLVQALVLLEKCFALSLV 275
Query: 477 GDKMWVS-LIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACK 535
D + V+ +++ C AG + +AA+ ++ VE G S A + L+ +C +
Sbjct: 276 PDVVTVTKVVEILCNAGRVTEAAEVLER-VESLGGSLDAVAYNTLIKGFCGVGKVKVGLH 334
Query: 536 FVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHG----FPPFVDPFIKY 591
F+ + L P TY LI R AL L MK G F F D I+
Sbjct: 335 FLKQMENKGYL-PNVDTYNILIYGFCESRMLDLALDLFNDMKTDGINRNFVTF-DTMIRG 392
Query: 592 VSKSGTSDDAIAFLKGMTSKRFPS---MSVVLCLFAAFFQARRHSEAQDLLSKC----PR 644
+ G +D + L+ M + S +S + F+ R EA + L+K PR
Sbjct: 393 LCSEGRIEDGFSILELMEETKEGSKGHISPYNSIIYGLFKQNRFDEASEFLAKMGKLFPR 452
Query: 645 YV 646
V
Sbjct: 453 AV 454
Score = 43.9 bits (102), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 66/337 (19%), Positives = 135/337 (40%), Gaps = 14/337 (4%)
Query: 304 YNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAM 363
YN + L R + R +++EM E+ + + + E N+V +A+ L E
Sbjct: 215 YNTLLHALCRNGKVGRARSLMNEMVDPN---EVTFNILISSYYKEENLV-QALVLLEKCF 270
Query: 364 ACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGR 423
A P V T ++ + + ++ ++V+ G L N+++K VG+
Sbjct: 271 ALSLVPDVVTVTKVVEILCNAGRVTEA--AEVLERVESLGGSLDAVAYNTLIKGFCGVGK 328
Query: 424 MGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVS 483
+ LK ME G++ + + + + + + D A + + M+ G + + +
Sbjct: 329 VKVGLHFLKQMENKGYLPNVDTYNILIYGFCESRMLDLALDLFNDMKTDGINRNFVTFDT 388
Query: 484 LIKGHCVAGDLDKAADCFQKMVE-KEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVR 542
+I+G C G ++ + M E KEG+ + ++ +NR +A +F+ +
Sbjct: 389 MIRGLCSEGRIEDGFSILELMEETKEGSKGHISPYNSIIYGLFKQNRFDEASEFL---AK 445
Query: 543 EYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFV---DPFIKYVSKSGTSD 599
L P I + +DA ++ M D G P + + + S+ G+
Sbjct: 446 MGKLFPRAVDRSMTIIQKCKEGAIEDAKNIYDKMIDEGGIPSILVYNSLVHGFSQHGSIR 505
Query: 600 DAIAFLKGMTSKR-FPSMSVVLCLFAAFFQARRHSEA 635
+A+ + M S FP S + F + + A
Sbjct: 506 EAVELINEMISNNCFPIASTFNAIITEFCEQGKIESA 542
>gi|302762967|ref|XP_002964905.1| hypothetical protein SELMODRAFT_167316 [Selaginella moellendorffii]
gi|300167138|gb|EFJ33743.1| hypothetical protein SELMODRAFT_167316 [Selaginella moellendorffii]
Length = 773
Score = 60.5 bits (145), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 71/358 (19%), Positives = 147/358 (41%), Gaps = 9/358 (2%)
Query: 283 KALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKV 342
+AL F++ + + K E Y M ++GRE +++ ++ ++M + + +
Sbjct: 64 RALRLFKYMQRQQWCKPTEHIYTIMIGIMGREGLLEKCSEIFEDMPENDVKWNVYAFTAL 123
Query: 343 LGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQ-LDMRLFSKVVRVFRE 401
+ + RN EA L+ A K + N T+ SK LD + R
Sbjct: 124 INAYG-RNGQYEA-SLHLLARMKKEQVEPNLITYNTVLNACSKGGLDWEGLLNLFAQMRH 181
Query: 402 NGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDE 461
G N++L A S G + + + K M E G +A + + + + +
Sbjct: 182 EGIQPDLITYNTLLSACSSRGLVEQAAMVFKTMNESGVVADAVTYKSLVDTFAGSNQLGR 241
Query: 462 ANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLV 521
E + ME G+ + SLI+ + AG++ AA F++M ++ G + L+
Sbjct: 242 VEELLREMEDEGNPPDIAGYNSLIEAYADAGNVHGAAGVFKQM-QRGGCAPDVETYSTLL 300
Query: 522 NTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGF 581
Y ++ + + + + +++ P TY LI+ F+++++L M D G
Sbjct: 301 RIYGNQG-CFEQVRSLFSDMKDLSTPPTVATYNSLIQVFGEGGYFQESINLFHDMVDSGV 359
Query: 582 PP---FVDPFIKYVSKSGTSDDAIAFLKGM-TSKRFPSMSVVLCLFAAFFQARRHSEA 635
P + + G + +A + M T++ PS+ L +++ + + +A
Sbjct: 360 KPDDATYSALLSVCGRGGLTREAAKIHQHMLTNESTPSLEASAGLISSYGKMAMYKDA 417
Score = 46.6 bits (109), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 48/235 (20%), Positives = 99/235 (42%), Gaps = 11/235 (4%)
Query: 302 SSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEF 361
++YN++ V G + +M G + + T +L + +EA +++
Sbjct: 329 ATYNSLIQVFGEGGYFQESINLFHDMVDSGVKPDDATYSALLSVCGRGGLTREAAKIHQH 388
Query: 362 AMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVF---RENGNVLTDAMLNSVLKAL 418
+ ++ PS+ L +S M ++ + + RE G + +++++
Sbjct: 389 MLTNESTPSLEASAGL-----ISSYGKMAMYKDALVSYYRIREAGLDPQVSAYDALIQGY 443
Query: 419 ISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEA-SGSDVG 477
G E L AM + GF A + + + S G DEA EF ++ GS+V
Sbjct: 444 AKGGLYVEAGSTLYAMNKAGFQAPVSSVNSVMEAYSKVGLHDEALEFFSELQQKEGSEVD 503
Query: 478 DKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAID 532
++ +L+ +C G L++A + F ++ KE + G + L+ + C + D
Sbjct: 504 ERTHETLLGVYCDMGLLEEAKEEF--VIIKETSKVPGARVYCLLLSLCVRRSKWD 556
Score = 46.2 bits (108), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 100/495 (20%), Positives = 188/495 (37%), Gaps = 92/495 (18%)
Query: 147 ARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQE-------------------FWGLV 187
A R F ++ ++ + + Y +M+ I+G GL+++ F L+
Sbjct: 65 ALRLFKYMQRQQWCKPTEHIYTIMIGIMGREGLLEKCSEIFEDMPENDVKWNVYAFTALI 124
Query: 188 DVMKKKG-YGVASHVRNKMTEKFEKEGLESDLEKLKGIF---ATGSIDNSIEKVASRICK 243
+ + G Y + H+ +M +KE +E +L + + G +D E + + +
Sbjct: 125 NAYGRNGQYEASLHLLARM----KKEQVEPNLITYNTVLNACSKGGLD--WEGLLNLFAQ 178
Query: 244 VVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESS 303
+ I D + L+ S LV+ +A + F+ ESG V D +
Sbjct: 179 MRHEGIQPDLITYNTL-LSACSSRGLVE-----------QAAMVFKTMNESGVVA-DAVT 225
Query: 304 YNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAM 363
Y ++ + + R ++L EM +G ++ ++ +++ V A ++
Sbjct: 226 YKSLVDTFAGSNQLGRVEELLREMEDEGNPPDIAGYNSLIEAYADAGNVHGAAGVF---- 281
Query: 364 ACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGR 423
K C D+ +S ++R++ G L S +K L +
Sbjct: 282 --KQMQRGGCAP------------DVETYSTLLRIYGNQGCFEQVRSLFSDMKDLSTPPT 327
Query: 424 MGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVS 483
+ N +++ EGG+ ++ N F D M SG D + +
Sbjct: 328 VATYNSLIQVFGEGGYF------------------QESINLFHD-MVDSGVKPDDATYSA 368
Query: 484 LIKGHCVAGDLDKAADCFQKMVEKEGT----SHAGYAIDLLVNTYCSKNRAIDACKFVHN 539
L+ G +AA Q M+ E T + AG L+++Y DA +
Sbjct: 369 LLSVCGRGGLTREAAKIHQHMLTNESTPSLEASAG-----LISSYGKMAMYKDALVSYYR 423
Query: 540 CVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGF-PPF--VDPFIKYVSKSG 596
+RE L P + Y+ LI+ + +A S L M GF P V+ ++ SK G
Sbjct: 424 -IREAGLDPQVSAYDALIQGYAKGGLYVEAGSTLYAMNKAGFQAPVSSVNSVMEAYSKVG 482
Query: 597 TSDDAIAFLKGMTSK 611
D+A+ F + K
Sbjct: 483 LHDEALEFFSELQQK 497
>gi|297833514|ref|XP_002884639.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297330479|gb|EFH60898.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 864
Score = 60.5 bits (145), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 62/231 (26%), Positives = 102/231 (44%), Gaps = 8/231 (3%)
Query: 385 KQLDMRLFSKVVRVFRENGNVLTDAMLNSVL-KALISVGRMGECNKILKAMEEGGFIASS 443
+ L++R KV + G +++ S+L L VGR+ E + M E G S+
Sbjct: 242 RGLNLRDALKVFDLMSREGTCAPNSVSYSILIHGLCEVGRLEEAFGLKDQMGEKGCQPST 301
Query: 444 NMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQK 503
+ + L G D+A D M A G + LI G C G +++A +K
Sbjct: 302 RTYTVLIKALCDRGLIDKAFNLFDEMIARGCKPNVHTYTVLIDGLCRDGKIEEANGVCRK 361
Query: 504 MVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLL-V 562
MV K+G + + L+N YC R + A + + + + KP T+ EL++ L V
Sbjct: 362 MV-KDGIFPSVITYNALINGYCKDGRVVPAFELL-TVMEKRACKPNVRTFNELMEGLCRV 419
Query: 563 QRGFKDALSLLCLMKDHGFPPFV---DPFIKYVSKSGTSDDAIAFLKGMTS 610
+ +K A+ LL M D+G P + + I + + G + A L M S
Sbjct: 420 GKPYK-AVHLLKRMLDNGLSPDIVSYNVLIDGLCREGHMNVAYKLLTSMNS 469
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 77/384 (20%), Positives = 160/384 (41%), Gaps = 42/384 (10%)
Query: 163 SSKTYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRNKMTEKFEKEGLESDLEKL- 221
S++TY ++++ + GL+ + + L D M +G H + + ++G + +
Sbjct: 300 STRTYTVLIKALCDRGLIDKAFNLFDEMIARGCKPNVHTYTVLIDGLCRDGKIEEANGVC 359
Query: 222 -----KGIFATGSIDNSIEKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDK 276
GIF + N++ + +VV + +E++ NV N+L++ + +
Sbjct: 360 RKMVKDGIFPSVITYNALINGYCKDGRVVPAFELLTVMEKRACKPNVRTFNELMEGLC-R 418
Query: 277 LGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEM 336
+G +P KA+ + ++G D SYN + L RE ++ +K+L M S E +
Sbjct: 419 VG-KPYKAVHLLKRMLDNGL-SPDIVSYNVLIDGLCREGHMNVAYKLLTSMNSFDLEPDC 476
Query: 337 ETCVKVLGRFSERN-----------MVKEAVDLYEFAMACKNKPSVNC-----CTFLLRK 380
T ++ F ++ M+++ + L E N F+L
Sbjct: 477 LTFTAIINAFCKQGKADVASAFLGLMLRKGISLDEVTGTTLIDGVCNVGKTRDALFILET 536
Query: 381 IVVSKQLD--------MRLFSKVVRVFREN---------GNVLTDAMLNSVLKALISVGR 423
+V + L + + SK ++ E G V + +++ LI G
Sbjct: 537 LVKMRMLTTPHSLNVILDMLSKGCKLKEELAMLGKINKLGLVPSVVTYTTLVDGLIRSGD 596
Query: 424 MGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVS 483
+ ++L+ M+ G + + + I L G+ +EA + + M+ SG +
Sbjct: 597 ISGSFRMLELMKLSGCLPNVYPYTIIINGLCQFGRVEEAEKLLSAMQDSGVSPNHVTYTV 656
Query: 484 LIKGHCVAGDLDKAADCFQKMVEK 507
++KG+ G LD+A + + MVE+
Sbjct: 657 MVKGYVNNGKLDRALETVRAMVER 680
Score = 43.1 bits (100), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 68/340 (20%), Positives = 128/340 (37%), Gaps = 44/340 (12%)
Query: 278 GDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEME 337
G + AL F G + SY+ + L ++ + + D+M KG +
Sbjct: 243 GLNLRDALKVFDLMSREGTCAPNSVSYSILIHGLCEVGRLEEAFGLKDQMGEKGCQPSTR 302
Query: 338 TCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVR 397
T ++ +R ++ +A +L++ +A KP+V+ T
Sbjct: 303 TYTVLIKALCDRGLIDKAFNLFDEMIARGCKPNVHTYT---------------------- 340
Query: 398 VFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAG 457
VL D + G++ E N + + M + G S + + G
Sbjct: 341 -------VLIDGLCRD--------GKIEEANGVCRKMVKDGIFPSVITYNALINGYCKDG 385
Query: 458 KKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAI 517
+ A E + ME + + L++G C G KA ++M++ G S +
Sbjct: 386 RVVPAFELLTVMEKRACKPNVRTFNELMEGLCRVGKPYKAVHLLKRMLDN-GLSPDIVSY 444
Query: 518 DLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKD-ALSLLCLM 576
++L++ C + A K + + + +DL+P T+ +I N ++G D A + L LM
Sbjct: 445 NVLIDGLCREGHMNVAYKLLTS-MNSFDLEPDCLTFTAII-NAFCKQGKADVASAFLGLM 502
Query: 577 KDHGFP---PFVDPFIKYVSKSGTSDDAIAFLKGMTSKRF 613
G I V G + DA+ L+ + R
Sbjct: 503 LRKGISLDEVTGTTLIDGVCNVGKTRDALFILETLVKMRM 542
>gi|357518651|ref|XP_003629614.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355523636|gb|AET04090.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 592
Score = 60.5 bits (145), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 72/332 (21%), Positives = 136/332 (40%), Gaps = 19/332 (5%)
Query: 287 FFRWAEESGF--------VKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMET 338
F RW E V D S N + VL +E I + V+ M G ++ T
Sbjct: 264 FGRWKEAGSLLDEMMKMGVMPDLQSLNILVDVLCKEGKIMQAKSVIGFMILVGEVPDVFT 323
Query: 339 CVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLD--MRLFSKVV 396
++ R+ +N + EA ++E ++ P + T L+ K ++ M L +++
Sbjct: 324 YNSLIDRYCLQNQMDEATRVFELMVSRGCLPDIVAYTSLIHGWCKIKNINKAMHLLDEMI 383
Query: 397 RVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSA 456
+V G +++ VGR ++ M + G + + + I L +
Sbjct: 384 KV----GFTPDVVTWTTLIGGFCQVGRPLAAKELFLNMHKYGQVPNLQTCAIILDGLCKS 439
Query: 457 GKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYA 516
EA ME S D+ ++ ++ G C AG L+ A + F + K G YA
Sbjct: 440 QLLSEALSLFHAMEKSNLDLNIVIYSIILDGMCSAGKLNTALELFSCLPAK-GLQINVYA 498
Query: 517 IDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLM 576
+++N + +K +D + + + + E P TY ++ L+ +R ++ L +M
Sbjct: 499 YTIMINGF-AKQGLLDKAEDLLSNMEENGCMPDSCTYNVFVQGLVAEREIARSIKYLTMM 557
Query: 577 KDHGF---PPFVDPFIKYVSKSGTSDDAIAFL 605
+D GF + I Y+S + ++ FL
Sbjct: 558 RDKGFSVDATTTEMIINYLSTNQGDNELREFL 589
>gi|357125354|ref|XP_003564359.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09900-like [Brachypodium distachyon]
Length = 665
Score = 60.5 bits (145), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 59/272 (21%), Positives = 114/272 (41%), Gaps = 8/272 (2%)
Query: 303 SYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFA 362
+Y + + + + KVLDEMR+KG + T ++ + V +A +
Sbjct: 174 TYTVLLEAVCKSSGFGQAMKVLDEMRAKGCTPNIVTYNVIINGMCREDRVDDARQILNRL 233
Query: 363 MACKNKPSVNCCTFLLRKIVVSKQLD--MRLFSKVVRVFRENGNVLTDAMLNSVLKALIS 420
+ +P T +L+ + +K+ + LF ++V EN V + + +++
Sbjct: 234 SSYGFQPDTVSYTTVLKGLCAAKRWEDVEVLFCEMV----ENNCVPNEVTFDMLVRFFCR 289
Query: 421 VGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKM 480
G + ++L M E G A++ + + + + G+ D+A EF+++M + G
Sbjct: 290 GGMVERAIEVLDRMSEHGCTANTTLCNIVINSICKQGRVDDAFEFLNNMGSYGCSPDTIS 349
Query: 481 WVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNC 540
+ +++KG C AG + A + +MV K + + + C K ID +
Sbjct: 350 YTTVLKGLCRAGRWEDAKELLNEMVRKNCPPNE-VTFNTFICILCQKG-LIDQAILLIEQ 407
Query: 541 VREYDLKPWHTTYEELIKNLLVQRGFKDALSL 572
+ EY TY L+ VQ AL L
Sbjct: 408 MPEYGCSVGIVTYNALVNGFCVQGRVDSALEL 439
Score = 55.5 bits (132), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/205 (22%), Positives = 88/205 (42%), Gaps = 8/205 (3%)
Query: 412 NSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEA 471
+S L+ LI+ + E ++++ G + +K+ L G+ +A + E
Sbjct: 39 SSRLRRLIARDDLAEAARLVERSTSRGEAPDVYLCTKLIRNLCRRGRTSDAARVLRTAEG 98
Query: 472 SGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAI 531
SG+ V + +L+ G+C G LD A ++++ Y L+ C + R
Sbjct: 99 SGAPVDVFAYNTLVAGYCRYGRLDAA----RRLIASMPVPPDAYTYTPLIRGLCDRGRVG 154
Query: 532 DACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFV---DPF 588
DA + + +R + +P TY L++ + GF A+ +L M+ G P + +
Sbjct: 155 DALSLLDDMLRR-ECQPSVVTYTVLLEAVCKSSGFGQAMKVLDEMRAKGCTPNIVTYNVI 213
Query: 589 IKYVSKSGTSDDAIAFLKGMTSKRF 613
I + + DDA L ++S F
Sbjct: 214 INGMCREDRVDDARQILNRLSSYGF 238
Score = 52.4 bits (124), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 48/204 (23%), Positives = 88/204 (43%), Gaps = 10/204 (4%)
Query: 412 NSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEA 471
+VLK L GR + ++L M + + L G D+A ++ M
Sbjct: 351 TTVLKGLCRAGRWEDAKELLNEMVRKNCPPNEVTFNTFICILCQKGLIDQAILLIEQMPE 410
Query: 472 SGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAI 531
G VG + +L+ G CV G +D A + F + + T L+ C R +
Sbjct: 411 YGCSVGIVTYNALVNGFCVQGRVDSALELFNSLPCEPNT----ITYTTLLTGLCHAER-L 465
Query: 532 DACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGF-KDALSLLCLMKDHGFPPFVDPF-- 588
DA + + + D P + ++ + Q+GF ++A+ L+ M +HG P + F
Sbjct: 466 DAAAELLAEMMQNDC-PLNVVTFNVLVSFFCQKGFVEEAIELVQQMMEHGCTPNLITFNT 524
Query: 589 -IKYVSKSGTSDDAIAFLKGMTSK 611
+ +++ S++A+ L G+ SK
Sbjct: 525 LLDGITEDCNSEEALELLHGLVSK 548
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 53/270 (19%), Positives = 111/270 (41%), Gaps = 10/270 (3%)
Query: 343 LGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFREN 402
L R R+ + EA L E + + P V CT L+R + ++ ++V+R +
Sbjct: 42 LRRLIARDDLAEAARLVERSTSRGEAPDVYLCTKLIRNL--CRRGRTSDAARVLRTAEGS 99
Query: 403 GNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEA 462
G + N+++ GR+ +++ +M + + + L G+ +A
Sbjct: 100 GAPVDVFAYNTLVAGYCRYGRLDAARRLIASMP---VPPDAYTYTPLIRGLCDRGRVGDA 156
Query: 463 NEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVN 522
+D M + L++ C + +A +M K G + ++++N
Sbjct: 157 LSLLDDMLRRECQPSVVTYTVLLEAVCKSSGFGQAMKVLDEMRAK-GCTPNIVTYNVIIN 215
Query: 523 TYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFP 582
C ++R DA + + N + Y +P +Y ++K L + ++D L C M ++
Sbjct: 216 GMCREDRVDDA-RQILNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEVLFCEMVENNCV 274
Query: 583 P---FVDPFIKYVSKSGTSDDAIAFLKGMT 609
P D +++ + G + AI L M+
Sbjct: 275 PNEVTFDMLVRFFCRGGMVERAIEVLDRMS 304
>gi|238478688|ref|NP_174320.2| PPR repeat domain-containing protein [Arabidopsis thaliana]
gi|332193082|gb|AEE31203.1| PPR repeat domain-containing protein [Arabidopsis thaliana]
Length = 806
Score = 60.5 bits (145), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 71/335 (21%), Positives = 131/335 (39%), Gaps = 5/335 (1%)
Query: 250 WGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMAS 309
W E Q+R+L + V V+ DE + AL FF WA+ +HD Y +M
Sbjct: 157 WNPKHEGQMRNLLRSLKPSQVCAVLRSQDDE-RVALKFFYWADRQWRYRHDPMVYYSMLE 215
Query: 310 VLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKP 369
VL + +VL M+ +G E +V+ +S +++A+ + +P
Sbjct: 216 VLSKTKLCQGSRRVLVLMKRRGIYRTPEAFSRVMVSYSRAGQLRDALKVLTLMQRAGVEP 275
Query: 370 SVNCCTFLLRKIVVSKQLDMRL-FSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECN 428
++ C + V + +L+ L F + ++V NV+T N +++ + R+ E
Sbjct: 276 NLLICNTTIDVFVRANRLEKALRFLERMQVVGIVPNVVT---YNCMIRGYCDLHRVEEAI 332
Query: 429 KILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGH 488
++L+ M G + I L + E + M M V D++ + +
Sbjct: 333 ELLEDMHSKGCLPDKVSYYTIMGYLCKEKRIVEVRDLMKKMAKEHGLVPDQVTYNTLIHM 392
Query: 489 CVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKP 548
D A F K +++G +V+ C + R +A ++ + + P
Sbjct: 393 LTKHDHADEALWFLKDAQEKGFRIDKLGYSAIVHALCKEGRMSEAKDLINEMLSKGHCPP 452
Query: 549 WHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPP 583
TY ++ A LL +M HG P
Sbjct: 453 DVVTYTAVVNGFCRLGEVDKAKKLLQVMHTHGHKP 487
Score = 55.8 bits (133), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 68/298 (22%), Positives = 124/298 (41%), Gaps = 10/298 (3%)
Query: 279 DEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGY-EMEME 337
D +AL F + A+E GF + D+ Y+A+ L +E + +++EM SKG+ ++
Sbjct: 397 DHADEALWFLKDAQEKGF-RIDKLGYSAIVHALCKEGRMSEAKDLINEMLSKGHCPPDVV 455
Query: 338 TCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIV-VSKQLDMRLFSKVV 396
T V+ F V +A L + +KP+ T LL + K L+ R +
Sbjct: 456 TYTAVVNGFCRLGEVDKAKKLLQVMHTHGHKPNTVSYTALLNGMCRTGKSLEAREMMNMS 515
Query: 397 RVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSA 456
+ N +T ++ ++ L G++ E +++ M GF + + L
Sbjct: 516 EEHWWSPNSITYSV---IMHGLRREGKLSEACDVVREMVLKGFFPGPVEINLLLQSLCRD 572
Query: 457 GKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAG-Y 515
G+ EA +FM+ G + + ++I G C +LD A M HA +
Sbjct: 573 GRTHEARKFMEECLNKGCAINVVNFTTVIHGFCQNDELDAALSVLDDMYLI--NKHADVF 630
Query: 516 AIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLL 573
LV+T K R +A + + + + + P TY +I D +++L
Sbjct: 631 TYTTLVDTLGKKGRIAEATELMKKMLHK-GIDPTPVTYRTVIHRYCQMGKVDDLVAIL 687
>gi|297737176|emb|CBI26377.3| unnamed protein product [Vitis vinifera]
Length = 572
Score = 60.5 bits (145), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 78/359 (21%), Positives = 146/359 (40%), Gaps = 14/359 (3%)
Query: 282 KKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVK 341
K+AL FF+ E G + D +YN++ L R L+ M +G+ + T
Sbjct: 198 KEALEFFKEMEGRG-ISADVYTYNSLIHGLSRAGLWKEVTWFLNLMVDRGFSPDAFTFTI 256
Query: 342 VLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRE 401
++ + V EA + E +P + L+ + + QL+ +K+ +
Sbjct: 257 LIDGLCKEGKVGEAQQILELMHHKGKEPDILTYNTLMNGLCLVGQLEDA--TKLFESLAD 314
Query: 402 NGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDE 461
G L N ++ ++ E ++ + M G S+ + + L +G+
Sbjct: 315 RGIKLNVFSYNILINGYCKDQKIDEAFRLFEEMRPKGLKPSTVTYNTLIGALCQSGRVRT 374
Query: 462 ANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLV 521
A + M+ G + + L+ G C G L++A D FQ + + E + +L+
Sbjct: 375 AQKLFVEMQTCGQFLKLSTYCVLLDGLCKNGHLEEAIDLFQSIKKTEHKPNI-EVFSILL 433
Query: 522 NTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGF 581
+ C + +A K + + L+P Y LI L + +A+ LL M++ G
Sbjct: 434 DGMCRAGKLEEAWKQFDE-ISKNGLEPDTIAYNILINGLCNKGMLSEAVKLLWQMEEKGC 492
Query: 582 PPFVDPF---IKYVSKSGTSDDAIAFLKGMTSKRFPS----MSVVLCLFAAFFQARRHS 633
P F I+ + K +AI L+ M ++ F S++LCL A F + H+
Sbjct: 493 LPDSITFNVIIQNLLKENEIHEAIQLLEEMRNRNFSPDEAVTSMLLCL--ASFDPQWHA 549
Score = 48.5 bits (114), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 62/255 (24%), Positives = 99/255 (38%), Gaps = 18/255 (7%)
Query: 403 GNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEA 462
G+V T M ++ +L G E + M G + + S + L G+ EA
Sbjct: 144 GDVFTYGM---IIDSLCKDGMTTEALDMFSEMIGAGILPDVVVYSSLMDGLCRFGRLKEA 200
Query: 463 NEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVN 522
EF ME G + SLI G AG L K F ++ G S + +L++
Sbjct: 201 LEFFKEMEGRGISADVYTYNSLIHGLSRAG-LWKEVTWFLNLMVDRGFSPDAFTFTILID 259
Query: 523 TYCSKNRAIDA---CKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDH 579
C + + +A + +H+ +E D+ TY L+ L + +DA L + D
Sbjct: 260 GLCKEGKVGEAQQILELMHHKGKEPDI----LTYNTLMNGLCLVGQLEDATKLFESLADR 315
Query: 580 GFPPFV---DPFIKYVSKSGTSDDAIAFLKGMTSKRF-PSMSVVLCLFAAFFQARRHSEA 635
G V + I K D+A + M K PS L A Q+ R A
Sbjct: 316 GIKLNVFSYNILINGYCKDQKIDEAFRLFEEMRPKGLKPSTVTYNTLIGALCQSGRVRTA 375
Query: 636 QDL---LSKCPRYVR 647
Q L + C ++++
Sbjct: 376 QKLFVEMQTCGQFLK 390
Score = 45.4 bits (106), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 70/336 (20%), Positives = 147/336 (43%), Gaps = 24/336 (7%)
Query: 146 EARRFFNWVLEKESERLSSK--TYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRN 203
EA FF E E +S+ TYN ++ + GL +E +++M +G+ +
Sbjct: 199 EALEFFK---EMEGRGISADVYTYNSLIHGLSRAGLWKEVTWFLNLMVDRGFSPDAFTFT 255
Query: 204 KMTEKFEKEGLESDLEKLKGIFATGSIDNSI---EKVASRICKVVR----SDIWGDDVER 256
+ + KEG + +++ + + I + + +C V + + ++ +R
Sbjct: 256 ILIDGLCKEGKVGEAQQILELMHHKGKEPDILTYNTLMNGLCLVGQLEDATKLFESLADR 315
Query: 257 QLRDLNVTFSNDLVK-FVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGRED 315
++ LNV N L+ + D+ DE A F G +K +YN + L +
Sbjct: 316 GIK-LNVFSYNILINGYCKDQKIDE---AFRLFEEMRPKG-LKPSTVTYNTLIGALCQSG 370
Query: 316 CIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCT 375
+ K+ EM++ G +++ T +L + ++EA+DL++ ++KP++ +
Sbjct: 371 RVRTAQKLFVEMQTCGQFLKLSTYCVLLDGLCKNGHLEEAIDLFQSIKKTEHKPNIEVFS 430
Query: 376 FLLRKIVVSKQLD--MRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKA 433
LL + + +L+ + F ++ + E + + ++N L + G + E K+L
Sbjct: 431 ILLDGMCRAGKLEEAWKQFDEISKNGLEPDTIAYNILIN----GLCNKGMLSEAVKLLWQ 486
Query: 434 MEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHM 469
MEE G + S + I L + EA + ++ M
Sbjct: 487 MEEKGCLPDSITFNVIIQNLLKENEIHEAIQLLEEM 522
>gi|449440748|ref|XP_004138146.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g18900-like [Cucumis sativus]
Length = 874
Score = 60.5 bits (145), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 90/379 (23%), Positives = 158/379 (41%), Gaps = 30/379 (7%)
Query: 227 TGSIDNSIEKVASRICKVVRSDIWGDDVERQLRDLNVTF----SNDLVKFVVDKLGDEPK 282
T S N+ V S C +++ WG E + LN + +N ++K V D+
Sbjct: 307 TSSFLNAPNVVESVSC-ILQQLKWGPAAEEAIGKLNCSIDAYQANQILKRV-----DDHA 360
Query: 283 KALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKV 342
AL FF W + +HD +Y M +LGR K+LD+M G + + T ++
Sbjct: 361 VALGFFYWLKRLPRFRHDGHTYTTMIGLLGRAKQFAAINKLLDQMIKDGCQPNVVTYNRI 420
Query: 343 LGRFSERNMVKEAVDLYEFAMACKNKPS-VNCCTFLLRKIVVSKQLD--MRLFSKVVRVF 399
+ + N +++AV++++ +P V CT L+ S LD M ++ K+
Sbjct: 421 IHSYGRANYLQDAVNVFKQMQEAGCEPDRVTYCT-LIDIHAKSGFLDVAMGMYEKM---- 475
Query: 400 RENGNVLTDAMLNSVL-KALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGK 458
++ + D SV+ L G + +++ M + G + + + I L + +
Sbjct: 476 -QDAGLTPDTFTYSVMINCLGKAGHLNAAHRLFCRMVDEGCVPNL-VTYNIMIALQAKAR 533
Query: 459 KDE-ANEFMDHMEASGSDVGDKMWVSLIK---GHCVAGDLDKAADCFQKMVEKEGTSHAG 514
E A + M+ SG + DK+ ++ GHC G L++A F +M +K
Sbjct: 534 NYEIALKLYRDMQQSGFEP-DKVTYCIVMEVLGHC--GFLEEAEGIFIEMQKKNWVPDEP 590
Query: 515 YAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLC 574
LLV+ + A ++ H ++ LKP T L+ L DA LL
Sbjct: 591 -VYGLLVDLWGKSGNVQKAWEWYHAMLKA-GLKPNVPTCNSLLSAFLRVHQLSDAYQLLQ 648
Query: 575 LMKDHGFPPFVDPFIKYVS 593
M G P + + +S
Sbjct: 649 SMLTFGLKPSLQTYTLLLS 667
>gi|224143015|ref|XP_002324819.1| predicted protein [Populus trichocarpa]
gi|222866253|gb|EEF03384.1| predicted protein [Populus trichocarpa]
Length = 552
Score = 60.5 bits (145), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 52/256 (20%), Positives = 114/256 (44%), Gaps = 4/256 (1%)
Query: 297 VKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAV 356
++ D +YN +A+ ++ +D+ V+ EM++ G + TC ++ + + ++EA+
Sbjct: 185 IQPDVVTYNTIATAYAQKGALDQAEGVILEMQNNGVQPNERTCGIIMSGYCKEGRIREAL 244
Query: 357 DLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLK 416
P++ L++ V +D +V+ + E G ++++
Sbjct: 245 RFAYRMKELGIHPNLVIFNSLIKGFVAI--MDRDGVDEVLNLMEEFGVKPDVITFSTIMN 302
Query: 417 ALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDV 476
A + G M +C +I M + G ++ S +A A + ++A E + M SG
Sbjct: 303 AWSTAGFMEKCREIFDDMVKAGIEPDAHAYSILAKGYVRAQEPEKAEELLTTMIKSGFQP 362
Query: 477 GDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKF 536
++ ++I G C AG +D A F KM ++ G S + L+ + + A +
Sbjct: 363 NVVIFTTVISGWCSAGKMDYAVRVFDKMCQR-GISPNLKTFETLIWGFAEARQPWKAEEI 421
Query: 537 VHNCVREYDLKPWHTT 552
+ + E++++P +T
Sbjct: 422 LQ-IMTEFEVQPEKST 436
Score = 48.1 bits (113), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 40/173 (23%), Positives = 75/173 (43%), Gaps = 3/173 (1%)
Query: 412 NSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEA 471
++L AL R I+ +EE G S + + S +G + A E M+
Sbjct: 52 TTLLAALTMQKRFDSIYSIISQVEENGMNPDSIFFNAVINAFSESGNMESAMETFWKMQE 111
Query: 472 SGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAI 531
+G + +LIKG+ +AG +++ + M ++ ++LV +C+K R
Sbjct: 112 NGMKPTTSTYNTLIKGYGIAGKPEESVKLLELMSQEGNVKPNLRTYNVLVRAWCNKKRIT 171
Query: 532 DACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKD-ALSLLCLMKDHGFPP 583
+A V+ + ++P TY I Q+G D A ++ M+++G P
Sbjct: 172 EAWNVVYKMIAS-GIQPDVVTY-NTIATAYAQKGALDQAEGVILEMQNNGVQP 222
Score = 38.9 bits (89), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 34/168 (20%), Positives = 71/168 (42%), Gaps = 1/168 (0%)
Query: 418 LISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVG 477
L+ G+ E I ++ EGG S + + L+ + D + +E +G +
Sbjct: 23 LVEKGKPQEAESIFYSLIEGGHKPSLISYTTLLAALTMQKRFDSIYSIISQVEENGMNPD 82
Query: 478 DKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFV 537
+ ++I +G+++ A + F KM E G + L+ Y + ++ K +
Sbjct: 83 SIFFNAVINAFSESGNMESAMETFWKMQEN-GMKPTTSTYNTLIKGYGIAGKPEESVKLL 141
Query: 538 HNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFV 585
+E ++KP TY L++ ++ +A +++ M G P V
Sbjct: 142 ELMSQEGNVKPNLRTYNVLVRAWCNKKRITEAWNVVYKMIASGIQPDV 189
>gi|255660840|gb|ACU25589.1| pentatricopeptide repeat-containing protein [Pitraea cuneato-ovata]
Length = 418
Score = 60.5 bits (145), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 66/292 (22%), Positives = 116/292 (39%), Gaps = 5/292 (1%)
Query: 266 SNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLD 325
+ L++ VV + G + A +F E G + D ++ + + + +
Sbjct: 32 AKSLIQIVVSRKGKDSASA-VFATILETKGAQRSDIYVFSGLITAYLESGFLRDAIECFR 90
Query: 326 EMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSK 385
R Y + +TC KVL + K Y+ + C+ S+ L+ + K
Sbjct: 91 LTRENKYWVPFDTCRKVLEHLMKLKYFKLVWSFYKEILECRYPASLYFFNILMDRFC--K 148
Query: 386 QLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNM 445
+ ++RL V + G + N+++ I +G + E ++ AM G
Sbjct: 149 EGEIRLAQSVFDGITKWGLRPSVVSFNTLMNGYIKLGDLDEGFRLKSAMHASGVQPDVYT 208
Query: 446 KSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMV 505
S + L K DEA++ D M G + +LI GHC G LD A + +++M+
Sbjct: 209 YSVLINGLCKESKMDEAHKLFDEMLDRGLVPNGVTFTTLIDGHCKNGKLDLAMEIYKQML 268
Query: 506 EKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELI 557
+G S + L+ C K A K + + + LKP TY LI
Sbjct: 269 S-QGFSPDXITYNTLIYGLCKKGDLXQA-KDLXDEMSMKGLKPDKITYTTLI 318
Score = 49.7 bits (117), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 54/224 (24%), Positives = 93/224 (41%), Gaps = 16/224 (7%)
Query: 368 KPSVNCCTFLLRKIVVSKQLD--MRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMG 425
+P V + L+ + ++D +LF +++ + G V +++ G++
Sbjct: 203 QPDVYTYSVLINGLCKESKMDEAHKLFDEML----DRGLVPNGVTFTTLIDGHCKNGKLD 258
Query: 426 ECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLI 485
+I K M GF + + + L G +A + D M G + +LI
Sbjct: 259 LAMEIYKQMLSQGFSPDXITYNTLIYGLCKKGDLXQAKDLXDEMSMKGLKPDKITYTTLI 318
Query: 486 KGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYD 545
G C GDL+ A + ++M+ KE + L++ C + R++DA K + +
Sbjct: 319 DGSCKEGDLETAFEYRKRMI-KENIRLDDVSYTALISGLCKEGRSVDAEKMLREML-SVG 376
Query: 546 LKPWHTTY----EELIKNLLVQRGFKDALSLLCLMKDHGFPPFV 585
LKP TY E KN V+ G K LL M+ G P V
Sbjct: 377 LKPDTGTYTIVMHEFCKNGDVKMGSK----LLKEMQRDGHVPCV 416
>gi|255556314|ref|XP_002519191.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223541506|gb|EEF43055.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 719
Score = 60.5 bits (145), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 125/624 (20%), Positives = 225/624 (36%), Gaps = 81/624 (12%)
Query: 77 NPNFRNPMICSYSSEPAMEQKES---DFTVVSDIFYKFSDVNDISKQLELSGVVFTHEMV 133
NP F NP S+ P K S D S I + ++ + + + V
Sbjct: 57 NPQFTNPNSLKISNNPISANKYSKPIDHHYFSRILSRHDWFLLLNHEFKAKRITLNSHSV 116
Query: 134 LKVLKNLESSPDEARRFFNWV-----LEKESERLSSKTYNLMLRIVGVHGLVQEFWGLVD 188
VL+N E+ P +F+ WV L + + + N + R G V L+
Sbjct: 117 ASVLQNQEN-PLYPLKFYIWVSNMDPLFAKDQSVKGVLANCLYR----KGPVVLSVELLK 171
Query: 189 VMKKKGYGVASHVRNKMTEKFEKEGLESDLEKLKGIFATGSIDNSIEKVASRICKVVRSD 248
+K GY + + + + + GL +++ G + I S + I +V+S+
Sbjct: 172 DIKASGYRINEELLCILIGSWGRLGLAKYCDEIFGQISFLGISPSTRLYNAVIDALVKSN 231
Query: 249 -----------IWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFV 297
+ D+ + N+ VVD+ AL + E G+
Sbjct: 232 SLDLAYLKFQQMSADNCKPDRFTYNILIHGVCRSGVVDE-------ALRLVKQMEGLGY- 283
Query: 298 KHDESSYNAMASVLGREDCIDRFWKVLDEMRS------------------------KGYE 333
+ +Y + +D ++VL+ M++ K +E
Sbjct: 284 SPNVFTYTILIDGFFNAKKVDEAFRVLETMKARKVSPSEATIRSFIHGVFRCVAPNKAFE 343
Query: 334 MEME-----------TCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIV 382
+ +E C +L S +NM +EA L + +KP + TF +
Sbjct: 344 LAIEFIEREPVLQRLACDTLLCCLSSKNMAREAGALLKKFGKIGHKP--DSATFNIAMNC 401
Query: 383 VSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIAS 442
+ K D+ ++ F E G + +++KAL G++ E N M + G + +
Sbjct: 402 LIKGFDLNEVCNILDRFVEQGMKFGFSTYLALIKALYMAGKVTEGNHYFNQMVKDGLLCN 461
Query: 443 SNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQ 502
+ + D+A M+ G + +LI G+C G++ K+ D
Sbjct: 462 VCSYNMVIDCFCKTSMMDKATNTFKEMQYKGIPPNLVTFNTLIDGYCKGGEICKSRDLLV 521
Query: 503 KMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVRE---YDLKPWHTTYEELIKN 559
++E G + +++ C + DA C E + L P TY LI +
Sbjct: 522 MLLE-HGFKPDIFTFSSIIDGLCRAKQIEDAL----GCFSEMVMWGLSPNAVTYNILIHS 576
Query: 560 LLVQRGFKDALSLLCLMKDHGFPPFVDPF---IKYVSKSGTSDDAIAFLKGMTS-KRFPS 615
L + ++ LL M+ G P V F I+ + G +DA M S P
Sbjct: 577 LCIIGDVPRSMKLLRKMQTDGINPDVFSFNALIQSFCRMGKVEDAKKLFSSMLSLGLIPD 636
Query: 616 MSVVLCLFAAFFQARRHSEAQDLL 639
+ F Q+ R +EA++L
Sbjct: 637 NYTYVAFIKVFCQSGRFNEAKELF 660
Score = 41.6 bits (96), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 46/240 (19%), Positives = 104/240 (43%), Gaps = 7/240 (2%)
Query: 303 SYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFA 362
SYN + + +D+ EM+ KG + T ++ + + + ++ DL
Sbjct: 464 SYNMVIDCFCKTSMMDKATNTFKEMQYKGIPPNLVTFNTLIDGYCKGGEICKSRDLLVML 523
Query: 363 MACKNKPSVNCCTFLLRKIVVSKQLDMRL--FSKVVRVFRENGNVLTDAMLNSVLKALIS 420
+ KP + + ++ + +KQ++ L FS++V ++ + N +T N ++ +L
Sbjct: 524 LEHGFKPDIFTFSSIIDGLCRAKQIEDALGCFSEMV-MWGLSPNAVT---YNILIHSLCI 579
Query: 421 VGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKM 480
+G + K+L+ M+ G + + GK ++A + M + G +
Sbjct: 580 IGDVPRSMKLLRKMQTDGINPDVFSFNALIQSFCRMGKVEDAKKLFSSMLSLGLIPDNYT 639
Query: 481 WVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNC 540
+V+ IK C +G ++A + F M E G + +++++ +++ A K C
Sbjct: 640 YVAFIKVFCQSGRFNEAKELFLSM-EANGCMPDSFTCNIILDALVKQDQFEAAQKIAKTC 698
>gi|326513918|dbj|BAJ92109.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 459
Score = 60.5 bits (145), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 79/388 (20%), Positives = 142/388 (36%), Gaps = 13/388 (3%)
Query: 241 ICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLG-DEPKKALIFFRWAEESGFVKH 299
+ +VR D + + +LR L F DL V+ EP A F W
Sbjct: 52 LSTIVRRDFYLERTLNRLR-LPSPFPPDLALRVIRAAAPSEPLHAARFLAWIRAKPNFSP 110
Query: 300 DESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLY 359
++A+ L R W +MR+ G + T V+ + + ++AV+++
Sbjct: 111 SADHFDALLLPLARARLFTHLWTQASDMRALGLPLSPATFSAVISSYGHSRLAEQAVEVF 170
Query: 360 EFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALI 419
+ LL + + K++R G A ++++ A
Sbjct: 171 NRLPHFGCPQTTEVYNALLDALCANGNFAGAY--KLLRRMARKGVAPDRATFSTLVDAWC 228
Query: 420 SVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDK 479
+ G++ E L M GF + + L AG+ +EA F + G
Sbjct: 229 ASGKLREAQAFLDDMATRGFRPPVRGRDLLVDGLVRAGRLEEAKAFALRITKEGVLPDVA 288
Query: 480 MWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHN 539
+ SL + C AGD++ A G +++ R +A + +
Sbjct: 289 TFNSLAQALCDAGDVEFAVGLLAD-ASSRGMCPDISTYKVMLPAVAKAGRIEEAFRLFYA 347
Query: 540 CVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPFIKYVS---KSG 596
+ E +P+ + Y ++K L F DA + MK G PP ++ V + G
Sbjct: 348 AI-EDGHRPFPSLYAAIVKALCKAGRFADAFAFFGDMKSKGHPPNRPVYVMLVKMCVRGG 406
Query: 597 TSDDAIAFLKGMT----SKRFPSMSVVL 620
DA +L M+ + R P+ +VV+
Sbjct: 407 RFLDAANYLLEMSEAGFAPRAPTFNVVV 434
>gi|326510773|dbj|BAJ91734.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 711
Score = 60.5 bits (145), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 84/366 (22%), Positives = 150/366 (40%), Gaps = 20/366 (5%)
Query: 284 ALIFFRWAEESGFVKHDESSYNAMA---SVLGREDCIDRFWKVLDEMRSKGYEMEMETCV 340
A + R ++G V ++ +Y +M S LGR + K+ EM +G ++ +
Sbjct: 170 AELLLRQMVDNG-VPPNKVTYTSMIHGYSTLGRWE---EATKMFREMTGRGLIPDIVSWN 225
Query: 341 KVLGRFSERNMVKEAVDLYEFAMACK-NKPSVNCCTFLLRKIVVSKQL-DMRLFSKVVRV 398
+ + KEA +++ ++MA K ++P++ LL DM F
Sbjct: 226 SFMDSLCKHGRSKEAAEIF-YSMAAKGHRPNIVTYGILLHGYATEGCFADMMSF---FNT 281
Query: 399 FRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGK 458
+ +G V + ++ A G M E IL M+ G S + L G+
Sbjct: 282 MKGDGIVANCLVFTILIDAYAKRGMMDEAMLILSEMQGQGLSPDVFTYSTLISALCRMGR 341
Query: 459 KDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYA-I 517
+A + + M +G ++ SLI+G C GDL KA + +M+ G A
Sbjct: 342 LADAVDKFNQMIGTGVQPNTVVYHSLIQGFCTHGDLVKAKELVYEMMN-NGIPRPNIAFF 400
Query: 518 DLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMK 577
+ +V++ C + R +DA + + V++ + + LI + A S+L M
Sbjct: 401 NSIVHSICKEGRVMDA-HHIFDLVKDIGERSDIIMFNTLIDGYCLVGEMGKAFSVLDAMI 459
Query: 578 DHGFPPFVDPFIKYVS---KSGTSDDAIAFLKGMTSKRF-PSMSVVLCLFAAFFQARRHS 633
G P + V+ KSG DD + + M+ K+ P+ + F+A R
Sbjct: 460 SAGIGPDTFTYNTLVNGYFKSGRIDDGLNLFREMSDKKIKPTTVTYNIILDGLFRAGRTV 519
Query: 634 EAQDLL 639
AQ +L
Sbjct: 520 AAQKML 525
Score = 47.0 bits (110), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 49/234 (20%), Positives = 94/234 (40%), Gaps = 14/234 (5%)
Query: 412 NSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEA 471
N+V+ G++G+ + M + GF+ + I L A D A + M
Sbjct: 120 NTVIHGFFKEGKIGKACNLYHEMMQQGFVPDVVTHNSIINALCKARAVDNAELLLRQMVD 179
Query: 472 SGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAI 531
+G + S+I G+ G ++A F++M + G + + +++ C R+
Sbjct: 180 NGVPPNKVTYTSMIHGYSTLGRWEEATKMFREMTGR-GLIPDIVSWNSFMDSLCKHGRSK 238
Query: 532 DACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHG-------FPPF 584
+A + ++ + +P TY L+ + F D +S MK G F
Sbjct: 239 EAAEIFYSMAAKGH-RPNIVTYGILLHGYATEGCFADMMSFFNTMKGDGIVANCLVFTIL 297
Query: 585 VDPFIKYVSKSGTSDDAIAFLKGMTSKRF-PSMSVVLCLFAAFFQARRHSEAQD 637
+D + +K G D+A+ L M + P + L +A + R ++A D
Sbjct: 298 IDAY----AKRGMMDEAMLILSEMQGQGLSPDVFTYSTLISALCRMGRLADAVD 347
Score = 39.3 bits (90), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 76/364 (20%), Positives = 132/364 (36%), Gaps = 45/364 (12%)
Query: 223 GIFATGSIDNSIEKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDE-- 280
G+ A + N++ K +C R+D + R++ +L V+ +L D+
Sbjct: 38 GLKADKTAANTVLKC---LCCTKRTDDAVKVLLRRMTELGCVPDAFSYAIVLKRLCDDNR 94
Query: 281 PKKALIFFRW-AEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETC 339
++AL R A+E G D +YN + +E I + + EM +G+ ++ T
Sbjct: 95 SQQALDLLRMMAKEEGVCSPDVVTYNTVIHGFFKEGKIGKACNLYHEMMQQGFVPDVVT- 153
Query: 340 VKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVF 399
N + A+ CK + +V+ LLR++V
Sbjct: 154 ---------HNSIINAL--------CKAR-AVDNAELLLRQMV----------------- 178
Query: 400 RENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKK 459
+NG S++ ++GR E K+ + M G I + L G+
Sbjct: 179 -DNGVPPNKVTYTSMIHGYSTLGRWEEATKMFREMTGRGLIPDIVSWNSFMDSLCKHGRS 237
Query: 460 DEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDL 519
EA E M A G + L+ G+ G F M + +G +
Sbjct: 238 KEAAEIFYSMAAKGHRPNIVTYGILLHGYATEGCFADMMSFFNTM-KGDGIVANCLVFTI 296
Query: 520 LVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDH 579
L++ Y +K +D + + ++ L P TY LI L DA+ M
Sbjct: 297 LIDAY-AKRGMMDEAMLILSEMQGQGLSPDVFTYSTLISALCRMGRLADAVDKFNQMIGT 355
Query: 580 GFPP 583
G P
Sbjct: 356 GVQP 359
>gi|147789724|emb|CAN67401.1| hypothetical protein VITISV_025967 [Vitis vinifera]
Length = 592
Score = 60.5 bits (145), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 66/318 (20%), Positives = 136/318 (42%), Gaps = 13/318 (4%)
Query: 300 DESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLY 359
D +YNA+ S + + I+ +VL+ M+++G+ ++ T ++G R + A+ +
Sbjct: 146 DVFAYNAVISGFCKVNQIEAATQVLNRMKARGFLPDIVTYNIMIGSLCNRRKLGLALTVL 205
Query: 360 EFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALI 419
+ + P+V T L+ +V ++ + K++ G + N++++ +
Sbjct: 206 DQLLLDNCMPTVITYTILIEATIVEGGINEAM--KLLEEMLARGLLPDMYTYNAIIRGMC 263
Query: 420 SVGRMGECNKILKAMEEGGF---IASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDV 476
G + +++ ++ G + S N+ + AF + GK DE + + M + G +
Sbjct: 264 KEGMVERAAELITSLTSKGCEPDVISYNILLR-AFL--NQGKWDEGEKLVAEMFSRGCEP 320
Query: 477 GDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKF 536
+ LI C G +D+A + M+EKE T Y+ D L++ C + R +D
Sbjct: 321 NKVTYSILISSLCRFGRIDEAISVLKVMIEKELTPDT-YSYDPLISALCKEGR-LDLAIG 378
Query: 537 VHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPFIKYVS--- 593
+ + + P Y ++ L AL + ++ G PP V + +S
Sbjct: 379 IMDYMISNGCLPDIVNYNTILAALCKNGNANQALEIFNKLRGMGCPPNVSSYNTMISALW 438
Query: 594 KSGTSDDAIAFLKGMTSK 611
G A+ + M SK
Sbjct: 439 SCGDRSRALGMVPAMISK 456
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 75/340 (22%), Positives = 134/340 (39%), Gaps = 8/340 (2%)
Query: 303 SYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFA 362
+Y + E I+ K+L+EM ++G +M T ++ + MV+ A +L
Sbjct: 219 TYTILIEATIVEGGINEAMKLLEEMLARGLLPDMYTYNAIIRGMCKEGMVERAAELITSL 278
Query: 363 MACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVG 422
+ +P V LLR + + D K+V G + ++ +L G
Sbjct: 279 TSKGCEPDVISYNILLRAFLNQGKWDEG--EKLVAEMFSRGCEPNKVTYSILISSLCRFG 336
Query: 423 RMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWV 482
R+ E +LK M E + + L G+ D A MD+M ++G +
Sbjct: 337 RIDEAISVLKVMIEKELTPDTYSYDPLISALCKEGRLDLAIGIMDYMISNGCLPDIVNYN 396
Query: 483 SLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVR 542
+++ C G+ ++A + F K+ G + + +++ S A V +
Sbjct: 397 TILAALCKNGNANQALEIFNKL-RGMGCPPNVSSYNTMISALWSCGDRSRALGMVPAMIS 455
Query: 543 EYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPF---IKYVSKSGTSD 599
+ + P TY LI L ++A+ LL M+ GF P V + + + K D
Sbjct: 456 K-GIDPDEITYNSLISCLCRDGLVEEAIGLLDDMEQSGFRPTVISYNIVLLGLCKVRRID 514
Query: 600 DAIAFLKGMTSKRF-PSMSVVLCLFAAFFQARRHSEAQDL 638
DAI M K P+ + + L A +EA +L
Sbjct: 515 DAIGMFAEMIEKGCRPNETTYILLIEGIGFAGWRTEAMEL 554
>gi|8778269|gb|AAF79278.1|AC068602_1 F14D16.2 [Arabidopsis thaliana]
Length = 977
Score = 60.5 bits (145), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 103/468 (22%), Positives = 180/468 (38%), Gaps = 39/468 (8%)
Query: 206 TEKFEKEGL-ESDLEKLKGIFATGSIDNSI---EKVASRICKVVRSDIWGDDVERQLRDL 261
+ +F G S +E +KG T + + V+R WG E L++L
Sbjct: 383 SNRFVPSGFSNSSVEMMKGPSGTALTSRQYCNSGHIVENVSSVLRRFRWGPAAEEALQNL 442
Query: 262 NVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFW 321
+ V+ ++ D AL FF W + KHD +Y M LGR
Sbjct: 443 GLRIDAYQANQVLKQMNDY-GNALGFFYWLKRQPGFKHDGHTYTTMVGNLGRAKQFGAIN 501
Query: 322 KVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPS-VNCCTFL-LR 379
K+LDEM G + T +++ + N + EA++++ KP V CT + +
Sbjct: 502 KLLDEMVRDGCQPNTVTYNRLIHSYGRANYLNEAMNVFNQMQEAGCKPDRVTYCTLIDIH 561
Query: 380 KIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSV-LKALISVGRMGECNKILKAMEEGG 438
+ M ++ ++ + G + D SV + L G + +K+ M + G
Sbjct: 562 AKAGFLDIAMDMYQRM-----QAGGLSPDTFTYSVIINCLGKAGHLPAAHKLFCEMVDQG 616
Query: 439 FIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIK---GHCVAGDLD 495
+ + + + A A + M+ +G + DK+ S++ GHC G L+
Sbjct: 617 CTPNLVTYNIMMDLHAKARNYQNALKLYRDMQNAGFEP-DKVTYSIVMEVLGHC--GYLE 673
Query: 496 KAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEE 555
+A F +M +K LLV+ + A ++ + + L+P T
Sbjct: 674 EAEAVFTEMQQKNWIPDEP-VYGLLVDLWGKAGNVEKAWQW-YQAMLHAGLRPNVPTCNS 731
Query: 556 LIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPFIKYVS--KSGTSDDAIAFL-KGMTSKR 612
L+ L +A LL M G P + + +S G S + F + M S
Sbjct: 732 LLSTFLRVNKIAEAYELLQNMLALGLRPSLQTYTLLLSCCTDGRSKLDMGFCGQLMASTG 791
Query: 613 FPSMSVVLCLFAAFFQARRHSEAQDLLSKCPRYVRNHA-DVLNLLYSK 659
P+ +L + AA VRNHA + L+L++S+
Sbjct: 792 HPAHMFLLKMPAAGPDGEN--------------VRNHANNFLDLMHSE 825
>gi|308082018|ref|NP_001183846.1| uncharacterized protein LOC100502439 [Zea mays]
gi|238014984|gb|ACR38527.1| unknown [Zea mays]
gi|414872746|tpg|DAA51303.1| TPA: hypothetical protein ZEAMMB73_971718 [Zea mays]
Length = 623
Score = 60.5 bits (145), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 88/407 (21%), Positives = 152/407 (37%), Gaps = 40/407 (9%)
Query: 215 ESDLEKLKGIFATGSIDNSIEKVASRICKVVRSDIW----GDDVERQLRD---------- 260
+SD + +G ATG + + +AS C D D+V R LR
Sbjct: 95 KSDFSEQQGCSATGGGSSPLSILAS--CPASHEDAEFEADMDEVSRILRSRFASPEAIVI 152
Query: 261 ----LNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDC 316
V S LV V+ + ++ A FF WA H SY+ M +LG+
Sbjct: 153 TMDCCPVRVSARLVSKVLSRFSNDWVAAFGFFMWAGTQEGYCHCADSYDMMVDILGKFKQ 212
Query: 317 IDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYE----FAMACKNKPSVN 372
D ++ +M G + + T KV+ R N +A+D + F +A K+ ++N
Sbjct: 213 FDLMCGLIGQMHEIGGLVSLATMTKVMRRLCGANRWSDAIDAFHKMDRFGVA-KDTKAMN 271
Query: 373 CCTFLLRKIVVSKQLDMRLFSKVVRVFRE-NGNVLTD-AMLNSVLKALISVGRMGECNKI 430
+++ R + F+ G + D + N+++ + E +
Sbjct: 272 --------VLLDTLCKERSVKRARGAFQALKGTIPPDESSFNTLVHGWCKARMLKEARET 323
Query: 431 LKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCV 490
+K ME GF S + + + +D M G + ++
Sbjct: 324 MKEMERHGFSPSVTTYTCLIEAYCMEKDFQTVDGILDEMHTKGCTPNIITYTIVMHALGK 383
Query: 491 AGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWH 550
AG +A D F K V+++G + + L+ C R DA FV + + P
Sbjct: 384 AGRTQEALDTFDK-VKQDGCALDASFYNCLIYILCRAGRLQDA-NFVVEEMHRTGISPNL 441
Query: 551 TTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFV---DPFIKYVSK 594
TT+ LI ++AL LL M++ P + P +K +
Sbjct: 442 TTFNTLISAACDHSLAENALKLLVQMEEQSCNPDIKTYTPLLKLCCR 488
>gi|78708657|gb|ABB47632.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
Length = 1080
Score = 60.5 bits (145), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 120/593 (20%), Positives = 224/593 (37%), Gaps = 104/593 (17%)
Query: 131 EMVLKVLKNLESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLVDVM 190
E V+ L++ + P EA F K ++ + N ML ++ HG V + + DVM
Sbjct: 58 EDVIHALRSADG-PAEALERFRSAARKPRVAHTTASCNYMLELMRGHGRVGDMAEVFDVM 116
Query: 191 KKK--------------GYGVASHVRNK--MTEKFEKEGLESDLEKLKGIFATGSIDNSI 234
+++ G GV +R+ ++ G+ + G+ + +
Sbjct: 117 QRQIVKANVGTFAAIFGGLGVEGGLRSAPVALPVMKEAGIVLNAYTYNGLVYF-LVKSGF 175
Query: 235 EKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEES 294
++ A + +V+ D V +R T+S +V F + + + L R E
Sbjct: 176 DREALEVYRVMMVD----GVVPSVR----TYSVLMVAFGKRR---DVETVLWLLREMEAH 224
Query: 295 GFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKE 354
G VK + SY VLG+ D +++L +M ++G + ++ T ++ + + +
Sbjct: 225 G-VKPNVYSYTICIRVLGQAKRFDEAYRILAKMENEGCKPDVITHTVLIQVLCDAGRISD 283
Query: 355 AVDLYEFAMACKNKPSVNCCTFLLRKI------------------------VVSKQLDMR 390
A D++ KP LL K VV+ +
Sbjct: 284 AKDVFWKMKKSDQKPDRVTYITLLDKFGDNGDSQSVMEIWNAMKADGYNDNVVAYTAVID 343
Query: 391 LFSKVVRVF---------RENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGG--- 438
+V RVF ++ G V NS++ + R G+ ++ K M+ G
Sbjct: 344 ALCQVGRVFEALEMFDEMKQKGIVPEQYSYNSLISGFLKADRFGDALELFKHMDIHGPKP 403
Query: 439 ----------FIASSN-----------MKSK-----------IAFRLSSAGKKDEANEFM 466
+ S MKSK + F L+ +G+ A
Sbjct: 404 NGYTHVLFINYYGKSGESIKAIQRYELMKSKGIVPDVVAGNAVLFGLAKSGRLGMAKRVF 463
Query: 467 DHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCS 526
++A G + +IK A D+A F M+E A++ L++T
Sbjct: 464 HELKAMGVSPDTITYTMMIKCCSKASKFDEAVKIFYDMIENNCVPDV-LAVNSLIDTLYK 522
Query: 527 KNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFV- 585
R +A + + ++E +L+P TY L+ L + K+ + LL M +PP +
Sbjct: 523 AGRGDEAWRIFYQ-LKEMNLEPTDGTYNTLLAGLGREGKVKEVMHLLEEMYHSNYPPNLI 581
Query: 586 --DPFIKYVSKSGTSDDAIAFLKGMTSKR-FPSMSVVLCLFAAFFQARRHSEA 635
+ + + K+G +DA+ L MT+K P +S + + R++EA
Sbjct: 582 TYNTILDCLCKNGAVNDALDMLYSMTTKGCIPDLSSYNTVIYGLVKEERYNEA 634
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 83/410 (20%), Positives = 157/410 (38%), Gaps = 83/410 (20%)
Query: 199 SHVRNKMTEKFEKEGLESDLEKLKGIFATGSI--DNSIEKVASRICKVVRSDIWGDDVER 256
S + M +K G+E +E + I ++G D + + +CK ++ + ++ +
Sbjct: 686 SSCHSLMEGILKKAGIEKSIEFAEIIASSGITLDDFFLCPLIKHLCKQKKA-LEAHELVK 744
Query: 257 QLRDLNVTFSNDLVKFVVDKLGDEP--KKALIFFRWAEESGFVKHDESSYNAMASVLGRE 314
+ + V+ L ++ L DE A F +E G DE +YN + +G+
Sbjct: 745 KFKSFGVSLKTGLYNSLICGLVDENLIDIAEGLFAEMKELG-CGPDEFTYNLLLDAMGKS 803
Query: 315 DCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCC 374
I+ KV +EM KGYE T ++ + +++A+DLY M+ P+ C
Sbjct: 804 MRIEEMLKVQEEMHRKGYESTYVTYNTIISGLVKSRRLEQAIDLYYNLMSQGFSPTP--C 861
Query: 375 TFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAM 434
T+ +L L+ GR+ + + M
Sbjct: 862 TY-----------------------------------GPLLDGLLKAGRIEDAENLFNEM 886
Query: 435 EEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDL 494
E G A+ ++ L+ GH +AG+
Sbjct: 887 LEYGCKANCT-----------------------------------IYNILLNGHRIAGNT 911
Query: 495 DKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYE 554
+K FQ MV+ +G + + ++++T C + D + + E L+P TY
Sbjct: 912 EKVCHLFQDMVD-QGINPDIKSYTIIIDTLCKAGQLNDGLTYFRQLL-EMGLEPDLITYN 969
Query: 555 ELIKNLLVQRGFKDALSLLCLMKDHGFPPFV---DPFIKYVSKSGTSDDA 601
LI L + ++A+SL M+ G P + + I ++ K+G + +A
Sbjct: 970 LLIDGLGKSKRLEEAVSLFNEMQKKGIVPNLYTYNSLILHLGKAGKAAEA 1019
Score = 49.3 bits (116), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 77/366 (21%), Positives = 152/366 (41%), Gaps = 54/366 (14%)
Query: 278 GDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEME 337
GDE + IF++ E + ++ + +YN + + LGRE + +L+EM Y +
Sbjct: 526 GDEAWR--IFYQLKEMN--LEPTDGTYNTLLAGLGREGKVKEVMHLLEEMYHSNYPPNLI 581
Query: 338 TCVKVLGRFSERNMVKEAVDLYEFAMACKN-KPSVNCCTFLLRKIVVSKQLDMRLFSKVV 396
T +L + V +A+D+ ++M K P ++ ++ +V ++ +++
Sbjct: 582 TYNTILDCLCKNGAVNDALDML-YSMTTKGCIPDLSSYNTVIYGLVKEER-----YNEAF 635
Query: 397 RVFRENGNVLTD--AMLNSVLKALISVGRMGECNKILKA--MEEG-------------GF 439
+F + VL A L ++L + + +G M E I+K ++ G G
Sbjct: 636 SIFCQMKKVLIPDYATLCTILPSFVKIGLMKEALHIIKDYFLQPGSKTDRSSCHSLMEGI 695
Query: 440 IASSNMKSKIAFR--LSSAG-------------------KKDEANEFMDHMEASGSDVGD 478
+ + ++ I F ++S+G K EA+E + ++ G +
Sbjct: 696 LKKAGIEKSIEFAEIIASSGITLDDFFLCPLIKHLCKQKKALEAHELVKKFKSFGVSLKT 755
Query: 479 KMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVH 538
++ SLI G +D A F +M E G + +LL++ K+ I+ V
Sbjct: 756 GLYNSLICGLVDENLIDIAEGLFAEMKEL-GCGPDEFTYNLLLDAM-GKSMRIEEMLKVQ 813
Query: 539 NCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPP---FVDPFIKYVSKS 595
+ + + TY +I L+ R + A+ L + GF P P + + K+
Sbjct: 814 EEMHRKGYESTYVTYNTIISGLVKSRRLEQAIDLYYNLMSQGFSPTPCTYGPLLDGLLKA 873
Query: 596 GTSDDA 601
G +DA
Sbjct: 874 GRIEDA 879
>gi|359495078|ref|XP_002269066.2| PREDICTED: pentatricopeptide repeat-containing protein At4g20740-like
[Vitis vinifera]
Length = 1294
Score = 60.5 bits (145), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 100/422 (23%), Positives = 169/422 (40%), Gaps = 27/422 (6%)
Query: 230 IDNSIEKVASRICKVVRSDI-WGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFF 288
I ++ +A IC R WG V L L + LV V+ K+ +P FF
Sbjct: 621 IAKNLSPIARYICDSFRKHRNWGPPVVADLNKLR-RVTPVLVAEVL-KVQTDPVICSKFF 678
Query: 289 RWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFS- 347
WA + KH+ +SYNA A L R + +V + M +G + E ++L R
Sbjct: 679 HWAGKQKGYKHNFASYNAFAYCLNRSNQFRAADQVPELMNMQG-KPPSEKQFEILIRMHI 737
Query: 348 ERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLT 407
+ N +YE KP V ++ +V + LD+ + V F+E+G V
Sbjct: 738 DANRGLRVYYVYEKMKKFGIKPRVFLYNRIMDGLVKTGHLDLAM--SVYEDFKEDGLVEE 795
Query: 408 DAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMD 467
++K L GR+ E ++ + M + + + L + + E E
Sbjct: 796 SVTYMILVKGLCKAGRIDEVLEVWEEMRKDKVEPDVMAYTTLVAALCNGNRVGEGFELFK 855
Query: 468 HMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDL-----LVN 522
M+ + ++ SLI+G V + A D + +++ +GY DL L+
Sbjct: 856 EMKQKKYLIDRAIYGSLIEGFVVNERVGSACDLLKDLMD------SGYRADLAIYNSLIE 909
Query: 523 TYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFP 582
C+ + A K V E L+P T + ++ + + D SLL M+ GF
Sbjct: 910 GMCNVKQVDKAYKLFQVTVHE-SLEPNFLTVKPMLVSYAEMKRMDDFCSLLGQMQKLGF- 967
Query: 583 PFVDPFIKYVS----KSGTSDDAIAFLKGMTSKRFPSMSVVLCLFAAFFQARRHSEAQDL 638
P +D K+ S K A+ + + +K + S+S+ L A R E +
Sbjct: 968 PVIDDLSKFFSVMIEKGERLKLALEVFEHLKAKGYCSISIYNILMEAI---HRTGEVKKA 1024
Query: 639 LS 640
LS
Sbjct: 1025 LS 1026
>gi|255539805|ref|XP_002510967.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223550082|gb|EEF51569.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 774
Score = 60.5 bits (145), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 69/326 (21%), Positives = 137/326 (42%), Gaps = 16/326 (4%)
Query: 298 KHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVD 357
+ D ++N + L ++ + ++++M + G + T +L F ++N ++EA
Sbjct: 377 RPDVFTFNTLIHGLCKKGLMGSAVDMVNDMSANGCTPNLITYTTLLDGFCKKNQLEEAGY 436
Query: 358 LYEFAMACKNKPSVNCCTFLLRKIV----VSKQLDMRLFSKVVRVFRENGNVLTDAMLNS 413
+ A + ++ LLR + V K LDM + + G N+
Sbjct: 437 VLNEMSAKGFELNIMGYNVLLRALCKNGKVPKALDM------LGEMSDKGCKPDIFTFNT 490
Query: 414 VLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASG 473
++ L V R + + + M G IA++ + + G EA + ++ M G
Sbjct: 491 LIFGLCKVDRKEDALALYRDMLLDGVIANTVTYNTLIHAFLRGGAIQEALKLVNDMLFRG 550
Query: 474 SDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDA 533
+ + + LIK C G +KA F +MV K+ + + +LL+N C + +A
Sbjct: 551 CPLDEITYNGLIKAFCKLGATEKALGLFDEMVRKD-LVPSNISCNLLINGLCRVGKVCNA 609
Query: 534 CKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPP---FVDPFIK 590
+ + + + L P TY LI L ++A +L ++ G P + I
Sbjct: 610 LELLRDMIHR-GLAPDVVTYNSLINGLCKMGNIREAFNLFNKLQAEGIQPDAITYNTLIC 668
Query: 591 YVSKSGTSDDA-IAFLKGMTSKRFPS 615
+ ++G DDA + L+G+ + P+
Sbjct: 669 WHCRAGMFDDAYLLLLRGVENAFIPN 694
Score = 44.3 bits (103), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 69/352 (19%), Positives = 148/352 (42%), Gaps = 14/352 (3%)
Query: 268 DLVKFVVDKLGDEPKKALI--FFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLD 325
D+ ++DKLG + +I +E G + ES + + GR + + ++L
Sbjct: 103 DVYHVLIDKLGAAKEFKVIDKLLLQIKEEG-IAFRESLFICIMKYYGRANLPGQATRMLL 161
Query: 326 EMRS-KGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVS 384
+M+ E ++ VL N A +++ ++ P+V +++ + +
Sbjct: 162 DMKGVYCCEPTFKSYNVVLDILVSANCPSVAANVFYEMLSKGVIPTVYTFGVVMKALCMV 221
Query: 385 KQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSN 444
++D ++R ++G V + +++ AL R+ E K+L+ M G + +
Sbjct: 222 NEVDNA--CSLLRDMTKHGCVPNSVVYQTLIHALSKRDRVNEALKLLEEMFLMGCLPDVD 279
Query: 445 MKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKM 504
+ + + L + E + +D M G D + L+ G C G +D+A Q +
Sbjct: 280 TFNDVIYGLCRLNRIHEGAKLVDRMLFRGFTPNDITYGVLMNGLCRVGKVDEA----QVL 335
Query: 505 VEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQR 564
+ K T + + +L+N Y R +A F+++ + + +P T+ LI L +
Sbjct: 336 LNKVPTPNDVH-FTILINGYVKSGRLDEANAFLYDKMIKNGCRPDVFTFNTLIHGLCKKG 394
Query: 565 GFKDALSLLCLMKDHGFPPFVDPFIKYV---SKSGTSDDAIAFLKGMTSKRF 613
A+ ++ M +G P + + + K ++A L M++K F
Sbjct: 395 LMGSAVDMVNDMSANGCTPNLITYTTLLDGFCKKNQLEEAGYVLNEMSAKGF 446
>gi|222637127|gb|EEE67259.1| hypothetical protein OsJ_24425 [Oryza sativa Japonica Group]
Length = 799
Score = 60.5 bits (145), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 83/358 (23%), Positives = 131/358 (36%), Gaps = 45/358 (12%)
Query: 303 SYNAMASVLGREDCIDRFWKVLDEMRSK-----------GYEM--EMETCVKVLGRFSER 349
SYN + L I ++ DEM S GY E+ET +K+L + R
Sbjct: 255 SYNILLKALCTAGRIKDAHQLFDEMASPPDVVTYGIMVHGYCTLSELETAIKLLSEMAAR 314
Query: 350 NMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRE---NGNVL 406
+ V V++ D S VRV + +G VL
Sbjct: 315 GLELNPVAYTS---------------------VIALLCDEGQVSDAVRVVEDMVMHGVVL 353
Query: 407 TDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFM 466
A+ +V+ G + M++ G A + + L AG+ EA +
Sbjct: 354 DAAVFTTVMSGFCRKGDLAAARNWFDEMQKRGLAADGVTYTALINGLCRAGELKEAERVL 413
Query: 467 DHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCS 526
ME G DV + LI G+C G + +A KMV+K T + L + C
Sbjct: 414 QEMEDKGLDVDAVTYTVLIDGYCKVGKMTEAFLVHNKMVQKRVTPNV-VTYTALSDGLCK 472
Query: 527 KNRAIDACKFVHN-CVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFV 585
+ A + +H C + +L + TY LI L + A+ + M + G P V
Sbjct: 473 QGDVCAANELLHEMCSKGLELNIF--TYNSLINGLCKAGNLEQAMRTMIDMDEAGLKPDV 530
Query: 586 DPF---IKYVSKSGTSDDAIAFLKGMTSKRF-PSMSVVLCLFAAFFQARRHSEAQDLL 639
+ I + +S D A + L+ M K P++ L F + R + LL
Sbjct: 531 YTYTTIIGALCQSKELDRAHSLLQEMLDKGIKPTIVTYNVLMNGFCMSGRVEGGKRLL 588
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 91/449 (20%), Positives = 182/449 (40%), Gaps = 33/449 (7%)
Query: 145 DEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLVDVMKKK----GYGVASH 200
DEA + F + EK ++ +YN++L+ + G +++ L D M YG+ H
Sbjct: 239 DEAVQLFQELPEK-----NTCSYNILLKALCTAGRIKDAHQLFDEMASPPDVVTYGIMVH 293
Query: 201 VRNKMTEKFEKEGLESDLEKLKGIFATGSIDNSIEKVASRICKVVRSDIWGDDVERQLRD 260
++E LE+ ++ L + A G N + + + ++ + D R + D
Sbjct: 294 GYCTLSE------LETAIKLLSEMAARGLELNPV--AYTSVIALLCDEGQVSDAVRVVED 345
Query: 261 L--------NVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLG 312
+ F+ + F + GD A +F ++ G D +Y A+ + L
Sbjct: 346 MVMHGVVLDAAVFTTVMSGFC--RKGDL-AAARNWFDEMQKRGLAA-DGVTYTALINGLC 401
Query: 313 REDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVN 372
R + +VL EM KG +++ T ++ + + + EA ++ + + P N
Sbjct: 402 RAGELKEAERVLQEMEDKGLDVDAVTYTVLIDGYCKVGKMTEAFLVHNKMVQKRVTP--N 459
Query: 373 CCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILK 432
T+ + KQ D+ ++++ G L NS++ L G + + + +
Sbjct: 460 VVTYTALSDGLCKQGDVCAANELLHEMCSKGLELNIFTYNSLINGLCKAGNLEQAMRTMI 519
Query: 433 AMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAG 492
M+E G + I L + + D A+ + M G + L+ G C++G
Sbjct: 520 DMDEAGLKPDVYTYTTIIGALCQSKELDRAHSLLQEMLDKGIKPTIVTYNVLMNGFCMSG 579
Query: 493 DLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTT 552
++ + M+EK + + L+ YC + + + + ++ + ++ P T
Sbjct: 580 RVEGGKRLLEWMLEKNIHPNTT-TYNSLMKQYCIE-KNMKSTTEIYKGMLSQEVVPNENT 637
Query: 553 YEELIKNLLVQRGFKDALSLLCLMKDHGF 581
Y LIK R K+AL M + GF
Sbjct: 638 YNILIKGHCKARNMKEALYFHSEMIEKGF 666
>gi|218199706|gb|EEC82133.1| hypothetical protein OsI_26175 [Oryza sativa Indica Group]
Length = 799
Score = 60.5 bits (145), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 83/358 (23%), Positives = 131/358 (36%), Gaps = 45/358 (12%)
Query: 303 SYNAMASVLGREDCIDRFWKVLDEMRSK-----------GYEM--EMETCVKVLGRFSER 349
SYN + L I ++ DEM S GY E+ET +K+L + R
Sbjct: 255 SYNILLKALCTAGRIKDAHQLFDEMASPPDVVTYGIMVHGYCTLSELETAIKLLSEMAAR 314
Query: 350 NMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRE---NGNVL 406
+ V V++ D S VRV + +G VL
Sbjct: 315 GLELNPVAYTS---------------------VIALLCDEGQVSDAVRVVEDMVMHGVVL 353
Query: 407 TDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFM 466
A+ +V+ G + M++ G A + + L AG+ EA +
Sbjct: 354 DAAVFTTVMSGFCRKGDLAAARNWFDEMQKRGLAADGVTYTALINGLCRAGELKEAERVL 413
Query: 467 DHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCS 526
ME G DV + LI G+C G + +A KMV+K T + L + C
Sbjct: 414 QEMEDKGLDVDAVTYTVLIDGYCKVGKMTEAFLVHNKMVQKRVTPNV-VTYTALSDGLCK 472
Query: 527 KNRAIDACKFVHN-CVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFV 585
+ A + +H C + +L + TY LI L + A+ + M + G P V
Sbjct: 473 QGDVCAANELLHEMCSKGLELNIF--TYNSLINGLCKAGNLEQAMRTMIDMDEAGLKPDV 530
Query: 586 DPF---IKYVSKSGTSDDAIAFLKGMTSKRF-PSMSVVLCLFAAFFQARRHSEAQDLL 639
+ I + +S D A + L+ M K P++ L F + R + LL
Sbjct: 531 YTYTTIIGALCQSKELDRAHSLLQEMLDKGIKPTIVTYNVLMNGFCMSGRVEGGKRLL 588
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 91/449 (20%), Positives = 182/449 (40%), Gaps = 33/449 (7%)
Query: 145 DEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLVDVMKKK----GYGVASH 200
DEA + F + EK ++ +YN++L+ + G +++ L D M YG+ H
Sbjct: 239 DEAVQLFQELPEK-----NTCSYNILLKALCTAGRIKDAHQLFDEMASPPDVVTYGIMVH 293
Query: 201 VRNKMTEKFEKEGLESDLEKLKGIFATGSIDNSIEKVASRICKVVRSDIWGDDVERQLRD 260
++E LE+ ++ L + A G N + + + ++ + D R + D
Sbjct: 294 GYCTLSE------LETAIKLLSEMAARGLELNPV--AYTSVIALLCDEGQVSDAVRVVED 345
Query: 261 L--------NVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLG 312
+ F+ + F + GD A +F ++ G D +Y A+ + L
Sbjct: 346 MVMHGVVLDAAVFTTVMSGFC--RKGDL-AAARNWFDEMQKRGLAA-DGVTYTALINGLC 401
Query: 313 REDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVN 372
R + +VL EM KG +++ T ++ + + + EA ++ + + P N
Sbjct: 402 RAGELKEAERVLQEMEDKGLDVDAVTYTVLIDGYCKVGKMTEAFLVHNKMVQKRVTP--N 459
Query: 373 CCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILK 432
T+ + KQ D+ ++++ G L NS++ L G + + + +
Sbjct: 460 VVTYTALSDGLCKQGDVCAANELLHEMCSKGLELNIFTYNSLINGLCKAGNLEQAMRTMI 519
Query: 433 AMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAG 492
M+E G + I L + + D A+ + M G + L+ G C++G
Sbjct: 520 DMDEAGLKPDVYTYTTIIGALCQSKELDRAHSLLQEMLDKGIKPTIVTYNVLMNGFCMSG 579
Query: 493 DLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTT 552
++ + M+EK + + L+ YC + + + + ++ + ++ P T
Sbjct: 580 RVEGGKRLLEWMLEKNIHPNTT-TYNSLMKQYCIE-KNMKSTTEIYKGMLSQEVVPNENT 637
Query: 553 YEELIKNLLVQRGFKDALSLLCLMKDHGF 581
Y LIK R K+AL M + GF
Sbjct: 638 YNILIKGHCKARNMKEALYFHSEMIEKGF 666
>gi|357115900|ref|XP_003559723.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g19290-like, partial [Brachypodium distachyon]
Length = 907
Score = 60.5 bits (145), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 106/461 (22%), Positives = 187/461 (40%), Gaps = 42/461 (9%)
Query: 163 SSKTYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRNKMTEKFEKEG-LESDLEKL 221
++ TYN +L G + + L +M K+G + + + F K G E L
Sbjct: 374 TTLTYNTLLNGFCSRGAIDDALKLWFLMLKRGVVPNEISCSTLLDGFFKAGKTEQALNLW 433
Query: 222 KGIFATGSIDN--SIEKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVD---K 276
K A G N +I V + +CK R +++ ++++ + + + ++D K
Sbjct: 434 KETLARGLARNVVTINTVINGLCKN-RRMTEAEELFHRMKEWSCPCDSLTYRTLIDGYCK 492
Query: 277 LGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEM 336
LGD + I E GFV E +N+ + L + + EM +KG
Sbjct: 493 LGDLGRATQIRIEM-ENLGFVPSVEM-FNSFITGLFIAKQSGKVNDIRVEMSAKGLSPNT 550
Query: 337 ETCVKVLGRFSERNMVKEAVDLYEFAMACKN-KPSVNCCTFLLR-----------KIVVS 384
T ++ + + + +A LY F M K KP++ C+ L+ +V+
Sbjct: 551 VTYGALIAGWCKEGNLHDACILY-FEMVEKGLKPNLFICSVLVSCFYREGKVDEANLVLQ 609
Query: 385 KQLDMRLF----------SKVVRVFRE--NGNVLT-DAMLNSVLKALISVGRMGECNKIL 431
K D + KV + GN + M N V+ L +GR+ + +
Sbjct: 610 KLADTDMIQDCSASTLNIGKVAHIIESLAGGNHQSAKIMWNIVILGLCKLGRVADARNLF 669
Query: 432 KAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVA 491
+ ++ GFI + S + S++G D A D M ++ + SLI G C +
Sbjct: 670 EDLKVKGFIPDNFTYSSLIHGCSASGSIDLAFGLRDEMLSARLTPNIVTYNSLIYGLCKS 729
Query: 492 GDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHT 551
++ +A F K+ + +G S + L++ +C +A K ++E ++P
Sbjct: 730 CNVSRAVSLFNKL-QSKGISPNAITYNTLIDGHCKDGNTTEAFKLKQKMIKE-GIQPTVF 787
Query: 552 TYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDP-FIKY 591
TY LI L Q ++A+ LL D VDP FI Y
Sbjct: 788 TYTILIHGLCTQGYMEEAIKLL----DQMIENNVDPNFITY 824
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 62/257 (24%), Positives = 105/257 (40%), Gaps = 29/257 (11%)
Query: 404 NVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMK-SKIAFRLSSAGKKDEA 462
NV+T +L +K GRM E K++K ++E I + + G+ ++A
Sbjct: 233 NVVTYTLL---VKGYCKEGRMEEAEKVVKEIKENEKIVIDEVAYGALINGYCQRGRMEDA 289
Query: 463 NEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVN 522
N D M +G V ++ ++I G+C G + + Q E G + Y+ + LV+
Sbjct: 290 NRVRDEMIDAGVQVNMFVYNTMINGYCKLGRMGEVEKLLQAN-EYRGVNLDEYSYNTLVD 348
Query: 523 TYCSK---NRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDH 579
YC K +A + C + VR TY L+ + DAL L LM
Sbjct: 349 GYCRKGFMTKAFETCDMM---VRN-GFTGTTLTYNTLLNGFCSRGAIDDALKLWFLMLKR 404
Query: 580 GFPP-------FVDPFIKYVSKSGTSDDAIAFLKGMTSKRFPSMSVVL-CLFAAFFQARR 631
G P +D F K+G ++ A+ K ++ V + + + RR
Sbjct: 405 GVVPNEISCSTLLDGFF----KAGKTEQALNLWKETLARGLARNVVTINTVINGLCKNRR 460
Query: 632 HSEAQDLLSK-----CP 643
+EA++L + CP
Sbjct: 461 MTEAEELFHRMKEWSCP 477
Score = 47.8 bits (112), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 40/187 (21%), Positives = 80/187 (42%), Gaps = 2/187 (1%)
Query: 347 SERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVL 406
++ +K+A+ +++ ++ ++ C LL ++V + D+ V + R G +
Sbjct: 105 ADAGQLKDALYVFDEMGKAGSRRTLRSCNRLLNQLVQAG--DIGTAVAVFQQMRCAGTLP 162
Query: 407 TDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFM 466
D + + KA GR+ LK MEE G + + G+ + A + +
Sbjct: 163 DDFTVAIMAKAYCRDGRVAHAADFLKEMEEMGLDVNLVAYHAVMDGYCRIGQTEVARKLL 222
Query: 467 DHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCS 526
++ G + L+KG+C G +++A +++ E E A L+N YC
Sbjct: 223 HSLQVKGLSPNVVTYTLLVKGYCKEGRMEEAEKVVKEIKENEKIVIDEVAYGALINGYCQ 282
Query: 527 KNRAIDA 533
+ R DA
Sbjct: 283 RGRMEDA 289
Score = 43.5 bits (101), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 49/193 (25%), Positives = 75/193 (38%), Gaps = 10/193 (5%)
Query: 376 FLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAML---NSVLKALISVGRMGECNKILK 432
LLR + QL L+ VF E G + L N +L L+ G +G + +
Sbjct: 99 LLLRAHADAGQLKDALY-----VFDEMGKAGSRRTLRSCNRLLNQLVQAGDIGTAVAVFQ 153
Query: 433 AMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAG 492
M G + + +A G+ A +F+ ME G DV + +++ G+C G
Sbjct: 154 QMRCAGTLPDDFTVAIMAKAYCRDGRVAHAADFLKEMEEMGLDVNLVAYHAVMDGYCRIG 213
Query: 493 DLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTT 552
+ A + + +G S LLV YC + R +A K V +
Sbjct: 214 QTEVARKLLHSL-QVKGLSPNVVTYTLLVKGYCKEGRMEEAEKVVKEIKENEKIVIDEVA 272
Query: 553 YEELIKNLLVQRG 565
Y LI N QRG
Sbjct: 273 YGALI-NGYCQRG 284
>gi|242086791|ref|XP_002439228.1| hypothetical protein SORBIDRAFT_09g002630 [Sorghum bicolor]
gi|241944513|gb|EES17658.1| hypothetical protein SORBIDRAFT_09g002630 [Sorghum bicolor]
Length = 653
Score = 60.5 bits (145), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 63/284 (22%), Positives = 115/284 (40%), Gaps = 12/284 (4%)
Query: 302 SSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEF 361
+SYNA+ L RE + + V+ +M +G + + T ++ F + ++ A +
Sbjct: 235 ASYNAVILALCREFRMQEVFAVVGDMVGRGLQPNVITYTTIVNAFCKAGELRMACAILAR 294
Query: 362 AMACKNKPSVNCCTFLLRKIV----VSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKA 417
+ P+V T L+ + V LDM + G + N +++
Sbjct: 295 MVITGCTPNVATFTALVGGLFNDGRVHDALDMW------KCMVAEGWAPSTVSYNVLIRG 348
Query: 418 LISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVG 477
L SVG + + +L ME+ G ++ S + S AG D A + M SG
Sbjct: 349 LCSVGDLKGASSVLNDMEQHGCFPNARTYSTLIDGFSKAGDLDGAISIWNDMTRSGCKPN 408
Query: 478 DKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFV 537
++ +++ C ++A KM+ E + L+ + C+ R A
Sbjct: 409 VVVYTNMVGVFCKKLMFNQAESLIDKML-VENCPPNTVTFNTLIRSLCNCRRVGRALGVF 467
Query: 538 HNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGF 581
H +R + P TY EL+ L + DAL ++ M++HG
Sbjct: 468 HE-MRRHGCPPNGRTYNELLHGLFREGNCGDALQMVIEMQNHGI 510
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 76/321 (23%), Positives = 127/321 (39%), Gaps = 42/321 (13%)
Query: 297 VKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAV 356
V+ + +YN + L + + K+LDEM +KG + T ++ V EA
Sbjct: 165 VQPNVFTYNLLVRALCQNHRVGAARKMLDEMATKGCPPDDVTYGTIVSALCTLGRVDEAT 224
Query: 357 DLYEFA---MACKNKPSVNCC-------TFLLRKIVVSK--QLDMRLFSKVVRVFRENGN 404
++ A A N + C F + +V + Q ++ ++ +V F + G
Sbjct: 225 EVLSAAPPVAASYNAVILALCREFRMQEVFAVVGDMVGRGLQPNVITYTTIVNAFCKAGE 284
Query: 405 -----------VLTD-----AMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSK 448
V+T A +++ L + GR+ + + K M G+ S+ +
Sbjct: 285 LRMACAILARMVITGCTPNVATFTALVGGLFNDGRVHDALDMWKCMVAEGWAPSTVSYNV 344
Query: 449 IAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKE 508
+ L S G A+ ++ ME G + + +LI G AGDLD A + M +
Sbjct: 345 LIRGLCSVGDLKGASSVLNDMEQHGCFPNARTYSTLIDGFSKAGDLDGAISIWNDMT-RS 403
Query: 509 GTSHAGYAIDLLVNTYCSK---NRA---IDACKFVHNCVREYDLKPWHTTYEELIKNLLV 562
G +V +C K N+A ID V NC P T+ LI++L
Sbjct: 404 GCKPNVVVYTNMVGVFCKKLMFNQAESLIDK-MLVENC------PPNTVTFNTLIRSLCN 456
Query: 563 QRGFKDALSLLCLMKDHGFPP 583
R AL + M+ HG PP
Sbjct: 457 CRRVGRALGVFHEMRRHGCPP 477
Score = 48.1 bits (113), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 84/372 (22%), Positives = 134/372 (36%), Gaps = 52/372 (13%)
Query: 317 IDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFA---MACKNKPSVNC 373
+D L EMR +G V +G F+ A+ + A + C +
Sbjct: 77 VDGVQLELQEMRLRGVPCTEGALVAAVGAFARAGAPDRALKTFYRAVHDLGCARPTAPRL 136
Query: 374 CTFLLRKIVVSKQLDMRLFSKVVRVFRENG---NVLTDAMLNSVLKALISVGRMGECNKI 430
L+ ++ + + V R++G NV T N +++AL R+G K+
Sbjct: 137 YNHLIDALLRENMVGA--VALVCGNMRKDGVQPNVFT---YNLLVRALCQNHRVGAARKM 191
Query: 431 LKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMD--------------------HME 470
L M G I L + G+ DEA E + M+
Sbjct: 192 LDEMATKGCPPDDVTYGTIVSALCTLGRVDEATEVLSAAPPVAASYNAVILALCREFRMQ 251
Query: 471 ASGSDVGDKM----------WVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLL 520
+ VGD + + +++ C AG+L A +MV T + L
Sbjct: 252 EVFAVVGDMVGRGLQPNVITYTTIVNAFCKAGELRMACAILARMVITGCTPNVA-TFTAL 310
Query: 521 VNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHG 580
V + R DA C+ P +Y LI+ L K A S+L M+ HG
Sbjct: 311 VGGLFNDGRVHDALDM-WKCMVAEGWAPSTVSYNVLIRGLCSVGDLKGASSVLNDMEQHG 369
Query: 581 FPPFVDPF---IKYVSKSGTSDDAIAFLKGMT-SKRFPSMSVVLCLFAAFFQARRHSEAQ 636
P + I SK+G D AI+ MT S P++ V + F + ++A+
Sbjct: 370 CFPNARTYSTLIDGFSKAGDLDGAISIWNDMTRSGCKPNVVVYTNMVGVFCKKLMFNQAE 429
Query: 637 DLLSK-----CP 643
L+ K CP
Sbjct: 430 SLIDKMLVENCP 441
>gi|242065566|ref|XP_002454072.1| hypothetical protein SORBIDRAFT_04g024190 [Sorghum bicolor]
gi|241933903|gb|EES07048.1| hypothetical protein SORBIDRAFT_04g024190 [Sorghum bicolor]
Length = 820
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 84/392 (21%), Positives = 151/392 (38%), Gaps = 31/392 (7%)
Query: 197 VASHVRNKMTEKFEKEGLESDLEKLKGIFATGSIDNSIEKVASRICKVVRSDIWGDDVER 256
VA + +KM + + S ++G TG +D ++E + R
Sbjct: 182 VAQDLFDKMPLRGFSQDAVSYAALIEGFCETGRVDEALE------------------LFR 223
Query: 257 QLRDLNVTFSNDLVKFVVD-KLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGRED 315
+L ++ LVK + D + G+E L + +E G+ + +Y A+ + RE
Sbjct: 224 ELEQPDMYTHAALVKGLCDARRGEE---GLYMLQKMKELGW-RPATRAYAALVDLWCREQ 279
Query: 316 CIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCT 375
+ K+L+EM G TC V+ + + AV ++E +P+V
Sbjct: 280 KAEEAEKMLNEMFDNGLVPCAVTCTAVVNAYCREGRMSGAVRVFESMKLKGCEPNVWTYN 339
Query: 376 FLLRKIVVSKQL--DMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKA 433
+++ ++ M L ++ RE G N +++ G + ++L+
Sbjct: 340 AMVQGFCNVGKVYKAMALLDQM----RECGVEPDVVTYNLLIRGQCIDGHIESAFRLLRL 395
Query: 434 MEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGD 493
ME G A + + L GK DEA D +E G + ++I G C G
Sbjct: 396 MEGNGLAADQYTYNVLIDALCKTGKVDEACSLFDGLEYRGIRPNSVTFNTVINGLCKGGK 455
Query: 494 LDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTY 553
D A +KMV G + Y + C + + F+ +++ D+KP Y
Sbjct: 456 FDVACTFLEKMVSA-GCAPDTYTYSPFIENLCKTKGSREGLSFIDEMLQK-DVKPSTVNY 513
Query: 554 EELIKNLLVQRGFKDALSLLCLMKDHGFPPFV 585
+I L +R + A + M G P V
Sbjct: 514 TIVIDRLFKERNYGLATRIWGQMVSLGCSPDV 545
Score = 57.4 bits (137), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 70/347 (20%), Positives = 137/347 (39%), Gaps = 36/347 (10%)
Query: 298 KHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAV- 356
+ D ++N++ R +D + D+M +G+ + + ++ F E V EA+
Sbjct: 161 RPDAFTFNSLILGYCRTQQLDVAQDLFDKMPLRGFSQDAVSYAALIEGFCETGRVDEALE 220
Query: 357 --------DLYEFAM----ACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVF-RENG 403
D+Y A C + L + + + R ++ +V ++ RE
Sbjct: 221 LFRELEQPDMYTHAALVKGLCDARRGEEGLYMLQKMKELGWRPATRAYAALVDLWCREQK 280
Query: 404 NVLTDAMLN---------------SVLKALISVGRMGECNKILKAMEEGGFIASSNMKSK 448
+ MLN +V+ A GRM ++ ++M+ G + +
Sbjct: 281 AEEAEKMLNEMFDNGLVPCAVTCTAVVNAYCREGRMSGAVRVFESMKLKGCEPNVWTYNA 340
Query: 449 IAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKE 508
+ + GK +A +D M G + + LI+G C+ G ++ A +++E
Sbjct: 341 MVQGFCNVGKVYKAMALLDQMRECGVEPDVVTYNLLIRGQCIDGHIESAFRLL-RLMEGN 399
Query: 509 GTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREY-DLKPWHTTYEELIKNLLVQRGFK 567
G + Y ++L++ C + +AC EY ++P T+ +I L F
Sbjct: 400 GLAADQYTYNVLIDALCKTGKVDEACSLFDGL--EYRGIRPNSVTFNTVINGLCKGGKFD 457
Query: 568 DALSLLCLMKDHGFPP---FVDPFIKYVSKSGTSDDAIAFLKGMTSK 611
A + L M G P PFI+ + K+ S + ++F+ M K
Sbjct: 458 VACTFLEKMVSAGCAPDTYTYSPFIENLCKTKGSREGLSFIDEMLQK 504
Score = 48.1 bits (113), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 41/197 (20%), Positives = 81/197 (41%), Gaps = 9/197 (4%)
Query: 387 LDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMK 446
L +RLF+ ++ T A N++++AL + + L M G+ +
Sbjct: 111 LMLRLFA---HMYHHGPPAPTGATYNALIRALCRRADLRHAQRYLSLMVRSGWRPDAFTF 167
Query: 447 SKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVE 506
+ + + D A + D M G + +LI+G C G +D+A + F+++ +
Sbjct: 168 NSLILGYCRTQQLDVAQDLFDKMPLRGFSQDAVSYAALIEGFCETGRVDEALELFRELEQ 227
Query: 507 KEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGF 566
+ +HA LV C R + + ++E +P Y L+ ++
Sbjct: 228 PDMYTHAA-----LVKGLCDARRGEEGLYMLQK-MKELGWRPATRAYAALVDLWCREQKA 281
Query: 567 KDALSLLCLMKDHGFPP 583
++A +L M D+G P
Sbjct: 282 EEAEKMLNEMFDNGLVP 298
Score = 47.0 bits (110), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 83/403 (20%), Positives = 154/403 (38%), Gaps = 81/403 (20%)
Query: 282 KKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVK 341
+ A R E +G D+ +YN + L + +D + D + +G T
Sbjct: 387 ESAFRLLRLMEGNGLAA-DQYTYNVLIDALCKTGKVDEACSLFDGLEYRGIRPNSVTFNT 445
Query: 342 VL------GRFSERNMVKE-------AVDLYEFAM----ACKNKPSVNCCTF---LLRK- 380
V+ G+F E A D Y ++ CK K S +F +L+K
Sbjct: 446 VINGLCKGGKFDVACTFLEKMVSAGCAPDTYTYSPFIENLCKTKGSREGLSFIDEMLQKD 505
Query: 381 ---------IVVSKQLDMRLFSKVVRVFRE------NGNVLTDAMLNSVLKALISVGRMG 425
IV+ + R + R++ + + +V+T + ++A + GR+
Sbjct: 506 VKPSTVNYTIVIDRLFKERNYGLATRIWGQMVSLGCSPDVVT---YTTSVRAYCNEGRLH 562
Query: 426 ECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGS----------- 474
E ++ M++GG I + + + +S GK D A + HM S
Sbjct: 563 EAENVVMEMKKGGIIVDAMAYNTLIDGHTSIGKTDHAVTILKHMTGVASMPNHFTFFILL 622
Query: 475 ----------DVGDK---MWVSLIKGHCVAGDLDKAADCFQ--KMVEKEGTSHAGYAIDL 519
DV K +W ++ + AD F+ ++++K + A
Sbjct: 623 RHLLQRRLAEDVPLKTTSVWKTI-----------ELADVFELFELMKKNSVPSSARAYLA 671
Query: 520 LVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDH 579
++ + S+ R +D + + ++E DL Y L+ R + DA +LLC M H
Sbjct: 672 ILEGF-SEERRLDEVTSLVSHMKEDDLPLNEDIYTSLVNCFCKLRMYPDAWALLCSMIGH 730
Query: 580 GFPPFVDPFIKYVS---KSGTSDDAIAFLKGMTSKRFPSMSVV 619
GF P + + +S G +D A +G+ K + + +V
Sbjct: 731 GFLPNLISYQYLLSGFTAEGQADRAKEIFRGLRWKEYNTDEIV 773
>gi|222612706|gb|EEE50838.1| hypothetical protein OsJ_31258 [Oryza sativa Japonica Group]
Length = 897
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 90/409 (22%), Positives = 158/409 (38%), Gaps = 37/409 (9%)
Query: 263 VTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWK 322
TF+ + + +LG +AL R G V D Y + L + +
Sbjct: 158 TTFTFGVAARALCRLG-RADEALALLRGMARHGCVP-DAVLYQTVIHALCDQGGVTEAAT 215
Query: 323 VLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIV 382
+L+EM G ++ T V+ V+EA L + M P V FLL+ +
Sbjct: 216 LLNEMLLMGCAADVNTFDDVVRGMCGLGRVREAARLVDRMMTKGCMPGVMTYGFLLQGLC 275
Query: 383 VSKQ-------------LDMRLFSKVVRVFRENGNVL---------------TDAMLNSV 414
+Q L++ LF+ V+ G + DA S+
Sbjct: 276 RVRQADEARAMLGRVPELNVVLFNTVIGGCLAEGKLAEATELYETMGLKGCQPDAHTYSI 335
Query: 415 L-KALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASG 473
L L +GR+G ++L+ ME+ GF + + + G D+ ++ M A G
Sbjct: 336 LMHGLCKLGRIGSAVRLLREMEKKGFAPNVVTYTIVLHSFCKNGMWDDTRALLEEMSAKG 395
Query: 474 SDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDA 533
+ + + +I C G +D+A Q+M +G + + + ++ C+ + +A
Sbjct: 396 LTLNSQGYNGMIYALCKDGRMDEAMGLIQEM-RSQGCNPDICSYNTIIYHLCNNEQMEEA 454
Query: 534 CKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFV---DPFIK 590
N + E + TY +I LL ++DA+ L M HG V + IK
Sbjct: 455 EHMFENLLEE-GVVANGITYNTIIHALLRDGRWQDAVRLAKEMILHGCSLDVVSYNGLIK 513
Query: 591 YVSKSGTSDDAIAFLKGMTSKRF-PSMSVVLCLFAAFFQARRHSEAQDL 638
+ K G D ++ L+ M K P+ L + + RR +A +L
Sbjct: 514 AMCKDGNVDRSLVLLEEMAEKGIKPNNVSYNILISELCKERRVRDALEL 562
>gi|115482066|ref|NP_001064626.1| Os10g0421800 [Oryza sativa Japonica Group]
gi|113639235|dbj|BAF26540.1| Os10g0421800, partial [Oryza sativa Japonica Group]
Length = 973
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 120/593 (20%), Positives = 224/593 (37%), Gaps = 104/593 (17%)
Query: 131 EMVLKVLKNLESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLVDVM 190
E V+ L++ + P EA F K ++ + N ML ++ HG V + + DVM
Sbjct: 93 EDVIHALRSADG-PAEALERFRSAARKPRVAHTTASCNYMLELMRGHGRVGDMAEVFDVM 151
Query: 191 KKK--------------GYGVASHVRNKMT--EKFEKEGLESDLEKLKGIFATGSIDNSI 234
+++ G GV +R+ ++ G+ + G+ + +
Sbjct: 152 QRQIVKANVGTFAAIFGGLGVEGGLRSAPVALPVMKEAGIVLNAYTYNGLVYF-LVKSGF 210
Query: 235 EKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEES 294
++ A + +V+ D V +R T+S +V F + + + L R E
Sbjct: 211 DREALEVYRVMMVD----GVVPSVR----TYSVLMVAFGKRR---DVETVLWLLREMEAH 259
Query: 295 GFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKE 354
G VK + SY VLG+ D +++L +M ++G + ++ T ++ + + +
Sbjct: 260 G-VKPNVYSYTICIRVLGQAKRFDEAYRILAKMENEGCKPDVITHTVLIQVLCDAGRISD 318
Query: 355 AVDLYEFAMACKNKPSVNCCTFLLRKI------------------------VVSKQLDMR 390
A D++ KP LL K VV+ +
Sbjct: 319 AKDVFWKMKKSDQKPDRVTYITLLDKFGDNGDSQSVMEIWNAMKADGYNDNVVAYTAVID 378
Query: 391 LFSKVVRVF---------RENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGG--- 438
+V RVF ++ G V NS++ + R G+ ++ K M+ G
Sbjct: 379 ALCQVGRVFEALEMFDEMKQKGIVPEQYSYNSLISGFLKADRFGDALELFKHMDIHGPKP 438
Query: 439 ----------FIASSN-----------MKSK-----------IAFRLSSAGKKDEANEFM 466
+ S MKSK + F L+ +G+ A
Sbjct: 439 NGYTHVLFINYYGKSGESIKAIQRYELMKSKGIVPDVVAGNAVLFGLAKSGRLGMAKRVF 498
Query: 467 DHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCS 526
++A G + +IK A D+A F M+E A++ L++T
Sbjct: 499 HELKAMGVSPDTITYTMMIKCCSKASKFDEAVKIFYDMIENNCVPDV-LAVNSLIDTLYK 557
Query: 527 KNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFV- 585
R +A + + ++E +L+P TY L+ L + K+ + LL M +PP +
Sbjct: 558 AGRGDEAWRIFYQ-LKEMNLEPTDGTYNTLLAGLGREGKVKEVMHLLEEMYHSNYPPNLI 616
Query: 586 --DPFIKYVSKSGTSDDAIAFLKGMTSKR-FPSMSVVLCLFAAFFQARRHSEA 635
+ + + K+G +DA+ L MT+K P +S + + R++EA
Sbjct: 617 TYNTILDCLCKNGAVNDALDMLYSMTTKGCIPDLSSYNTVIYGLVKEERYNEA 669
Score = 48.9 bits (115), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 77/366 (21%), Positives = 152/366 (41%), Gaps = 54/366 (14%)
Query: 278 GDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEME 337
GDE + IF++ E + ++ + +YN + + LGRE + +L+EM Y +
Sbjct: 561 GDEAWR--IFYQLKEMN--LEPTDGTYNTLLAGLGREGKVKEVMHLLEEMYHSNYPPNLI 616
Query: 338 TCVKVLGRFSERNMVKEAVDLYEFAMACKN-KPSVNCCTFLLRKIVVSKQLDMRLFSKVV 396
T +L + V +A+D+ ++M K P ++ ++ +V ++ +++
Sbjct: 617 TYNTILDCLCKNGAVNDALDML-YSMTTKGCIPDLSSYNTVIYGLVKEER-----YNEAF 670
Query: 397 RVFRENGNVLTD--AMLNSVLKALISVGRMGECNKILKA--MEEG-------------GF 439
+F + VL A L ++L + + +G M E I+K ++ G G
Sbjct: 671 SIFCQMKKVLIPDYATLCTILPSFVKIGLMKEALHIIKDYFLQPGSKTDRSSCHSLMEGI 730
Query: 440 IASSNMKSKIAFR--LSSAG-------------------KKDEANEFMDHMEASGSDVGD 478
+ + ++ I F ++S+G K EA+E + ++ G +
Sbjct: 731 LKKAGIEKSIEFAEIIASSGITLDDFFLCPLIKHLCKQKKALEAHELVKKFKSFGVSLKT 790
Query: 479 KMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVH 538
++ SLI G +D A F +M E G + +LL++ K+ I+ V
Sbjct: 791 GLYNSLICGLVDENLIDIAEGLFAEMKEL-GCGPDEFTYNLLLDAM-GKSMRIEEMLKVQ 848
Query: 539 NCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPP---FVDPFIKYVSKS 595
+ + + TY +I L+ R + A+ L + GF P P + + K+
Sbjct: 849 EEMHRKGYESTYVTYNTIISGLVKSRRLEQAIDLYYNLMSQGFSPTPCTYGPLLDGLLKA 908
Query: 596 GTSDDA 601
G +DA
Sbjct: 909 GRIEDA 914
Score = 40.4 bits (93), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 43/182 (23%), Positives = 81/182 (44%), Gaps = 8/182 (4%)
Query: 199 SHVRNKMTEKFEKEGLESDLEKLKGIFATGSI--DNSIEKVASRICKVVRSDIWGDDVER 256
S + M +K G+E +E + I ++G D + + +CK ++ + ++ +
Sbjct: 721 SSCHSLMEGILKKAGIEKSIEFAEIIASSGITLDDFFLCPLIKHLCKQKKA-LEAHELVK 779
Query: 257 QLRDLNVTFSNDLVKFVVDKLGDEP--KKALIFFRWAEESGFVKHDESSYNAMASVLGRE 314
+ + V+ L ++ L DE A F +E G DE +YN + +G+
Sbjct: 780 KFKSFGVSLKTGLYNSLICGLVDENLIDIAEGLFAEMKELG-CGPDEFTYNLLLDAMGKS 838
Query: 315 DCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCC 374
I+ KV +EM KGYE T ++ + +++A+DLY M+ P+ C
Sbjct: 839 MRIEEMLKVQEEMHRKGYESTYVTYNTIISGLVKSRRLEQAIDLYYNLMSQGFSPTP--C 896
Query: 375 TF 376
T+
Sbjct: 897 TY 898
>gi|222612845|gb|EEE50977.1| hypothetical protein OsJ_31558 [Oryza sativa Japonica Group]
Length = 1263
Score = 60.1 bits (144), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 120/593 (20%), Positives = 224/593 (37%), Gaps = 104/593 (17%)
Query: 131 EMVLKVLKNLESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLVDVM 190
E V+ L++ + P EA F K ++ + N ML ++ HG V + + DVM
Sbjct: 183 EDVIHALRSADG-PAEALERFRSAARKPRVAQTTASCNYMLELMRGHGRVGDMAEVFDVM 241
Query: 191 KKK--------------GYGVASHVRNKMT--EKFEKEGLESDLEKLKGIFATGSIDNSI 234
+++ G GV +R+ ++ G+ + G+ + +
Sbjct: 242 QRQIVKANVGTFAAIFGGLGVEGGLRSAPVALPVMKEAGIVLNAYTYNGLVYF-LVKSGF 300
Query: 235 EKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEES 294
++ A + +V+ D V +R T+S +V F + + + L R E
Sbjct: 301 DREALEVYRVMMVD----GVVPSVR----TYSVLMVAFGKRR---DVETVLWLLREMEAH 349
Query: 295 GFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKE 354
G VK + SY VLG+ D +++L +M ++G + ++ T ++ + + +
Sbjct: 350 G-VKPNVYSYTICIRVLGQAKRFDEAYRILAKMENEGCKPDVITHTVLIQVLCDAGRISD 408
Query: 355 AVDLYEFAMACKNKPSVNCCTFLLRKI------------------------VVSKQLDMR 390
A D++ KP LL K VV+ +
Sbjct: 409 AKDVFWKMKKSDQKPDRVTYITLLDKFGDNGDSQSVMEIWNAMKADGYNDNVVAYTAVID 468
Query: 391 LFSKVVRVF---------RENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGG--- 438
+V RVF ++ G V NS++ + R G+ ++ K M+ G
Sbjct: 469 ALCQVGRVFEALEMFDEMKQKGIVPEQYSYNSLISGFLKADRFGDALELFKHMDIHGPKP 528
Query: 439 ----------FIASSN-----------MKSK-----------IAFRLSSAGKKDEANEFM 466
+ S MKSK + F L+ +G+ A
Sbjct: 529 NGYTHVLFINYYGKSGESIKAIQRYELMKSKGIVPDVVAGNAVLFGLAKSGRLGMAKRVF 588
Query: 467 DHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCS 526
++A G + +IK A D+A F M+E A++ L++T
Sbjct: 589 HELKAMGVSPDTITYTMMIKCCSKASKFDEAVKIFYDMIENNCVPDV-LAVNSLIDTLYK 647
Query: 527 KNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFV- 585
R +A + + ++E +L+P TY L+ L + K+ + LL M +PP +
Sbjct: 648 AGRGDEAWRIFYQ-LKEMNLEPTDGTYNTLLAGLGREGKVKEVMHLLEEMYHSNYPPNLI 706
Query: 586 --DPFIKYVSKSGTSDDAIAFLKGMTSKR-FPSMSVVLCLFAAFFQARRHSEA 635
+ + + K+G +DA+ L MT+K P +S + + R++EA
Sbjct: 707 TYNTILDCLCKNGAVNDALDMLYSMTTKGCIPDLSSYNTVIYGLVKEERYNEA 759
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 50/230 (21%), Positives = 98/230 (42%), Gaps = 5/230 (2%)
Query: 375 TFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAM 434
T+ L + K + + KV G T N+++ L+ R+ + + +
Sbjct: 917 TYNLLLDAMGKSMRIEEMLKVQEEMHRKGYESTYVTYNTIISGLVKSRRLEQAIDLYYNL 976
Query: 435 EEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDL 494
GF + + L AG+ ++A + M G ++ L+ GH +AG+
Sbjct: 977 MSQGFSPTPCTYGPLLDGLLKAGRIEDAENLFNEMLEYGCKANCTIYNILLNGHRIAGNT 1036
Query: 495 DKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYE 554
+K FQ MV+ +G + + ++++T C + D + + E L+P TY
Sbjct: 1037 EKVCHLFQDMVD-QGINPDIKSYTIIIDTLCKAGQLNDGLTYFRQLL-EMGLEPDLITYN 1094
Query: 555 ELIKNLLVQRGFKDALSLLCLMKDHGFPPFV---DPFIKYVSKSGTSDDA 601
LI L + ++A+SL M+ G P + + I ++ K+G + +A
Sbjct: 1095 LLIDGLGKSKRLEEAVSLFNEMQKKGIVPNLYTYNSLILHLGKAGKAAEA 1144
Score = 48.5 bits (114), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 77/366 (21%), Positives = 152/366 (41%), Gaps = 54/366 (14%)
Query: 278 GDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEME 337
GDE + IF++ E + ++ + +YN + + LGRE + +L+EM Y +
Sbjct: 651 GDEAWR--IFYQLKEMN--LEPTDGTYNTLLAGLGREGKVKEVMHLLEEMYHSNYPPNLI 706
Query: 338 TCVKVLGRFSERNMVKEAVDLYEFAMACKN-KPSVNCCTFLLRKIVVSKQLDMRLFSKVV 396
T +L + V +A+D+ ++M K P ++ ++ +V ++ +++
Sbjct: 707 TYNTILDCLCKNGAVNDALDML-YSMTTKGCIPDLSSYNTVIYGLVKEER-----YNEAF 760
Query: 397 RVFRENGNVLTD--AMLNSVLKALISVGRMGECNKILKA--MEEG-------------GF 439
+F + VL A L ++L + + +G M E I+K ++ G G
Sbjct: 761 SIFCQMKKVLIPDYATLCTILPSFVKIGLMKEALHIIKDYFLQPGSKTDRSSCHSLMEGI 820
Query: 440 IASSNMKSKIAFR--LSSAG-------------------KKDEANEFMDHMEASGSDVGD 478
+ + ++ I F ++S+G K EA+E + ++ G +
Sbjct: 821 LKKAGIEKSIEFAEIIASSGITLDDFFLCPLIKHLCKQKKALEAHELVKKFKSFGVSLKT 880
Query: 479 KMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVH 538
++ SLI G +D A F +M E G + +LL++ K+ I+ V
Sbjct: 881 GLYNSLICGLVDENLIDIAEGLFAEMKEL-GCGPDEFTYNLLLDAM-GKSMRIEEMLKVQ 938
Query: 539 NCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPP---FVDPFIKYVSKS 595
+ + + TY +I L+ R + A+ L + GF P P + + K+
Sbjct: 939 EEMHRKGYESTYVTYNTIISGLVKSRRLEQAIDLYYNLMSQGFSPTPCTYGPLLDGLLKA 998
Query: 596 GTSDDA 601
G +DA
Sbjct: 999 GRIEDA 1004
>gi|302786208|ref|XP_002974875.1| hypothetical protein SELMODRAFT_150113 [Selaginella moellendorffii]
gi|300157770|gb|EFJ24395.1| hypothetical protein SELMODRAFT_150113 [Selaginella moellendorffii]
Length = 382
Score = 60.1 bits (144), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 54/213 (25%), Positives = 91/213 (42%), Gaps = 6/213 (2%)
Query: 434 MEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMD-HMEASGSDVGDKMWVSLIKGHCVAG 492
M+ G + S I L G+ +A E D +E + + + +LI G C G
Sbjct: 1 MDVEGMQCNDRTTSIILQGLCRCGRVAQALEHFDASLELAHAQPDVVSYTTLINGLCKLG 60
Query: 493 DLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTT 552
+D A D F+KMV G + + LV+ C ++R +DA + V R+ D P T
Sbjct: 61 RVDAAFDLFRKMVAAGGCRPNAFTYNALVDGLCKQDR-LDAARAVIAEARKRDFAPDVVT 119
Query: 553 YEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPF---IKYVSKSGTSDDAIAFLKGMT 609
Y L+ L +AL+ M + G+ P + F I + ++ DA+ M
Sbjct: 120 YNTLMAALFQLGRVDEALATFTQMTEEGYVPTLVSFNAIITGLCRARRLADALEVFNEMI 179
Query: 610 SKRF-PSMSVVLCLFAAFFQARRHSEAQDLLSK 641
+ F P++ + ++ + EAQ LL +
Sbjct: 180 DRDFHPNLVTYSVVIDGLCKSDQLDEAQQLLDR 212
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 62/306 (20%), Positives = 122/306 (39%), Gaps = 19/306 (6%)
Query: 284 ALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVL 343
A FR +G + + +YNA+ L ++D +D V+ E R + + ++ T ++
Sbjct: 65 AFDLFRKMVAAGGCRPNAFTYNALVDGLCKQDRLDAARAVIAEARKRDFAPDVVTYNTLM 124
Query: 344 GRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRE-- 401
+ V EA+ + P T + +++ R + + VF E
Sbjct: 125 AALFQLGRVDEALATFTQMTEEGYVP-----TLVSFNAIITGLCRARRLADALEVFNEMI 179
Query: 402 ----NGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAG 457
+ N++T + V+ L ++ E ++L M G + + S+AG
Sbjct: 180 DRDFHPNLVT---YSVVIDGLCKSDQLDEAQQLLDRMVSEGCRPDLVAYTPLVLGFSAAG 236
Query: 458 KKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAI 517
+ D A + M + G + +I C G +D A + F+++V + + +
Sbjct: 237 RLDSALGLLRRMVSQGCIPDVVTYTVVIDKLCKVGRVDDAHEIFRELVANKCSPNV-VTY 295
Query: 518 DLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMK 577
L+ YC +R + K +RE +P TY +I L + ++A + M
Sbjct: 296 SALIGGYCRASRVDEGGKV----MREMACRPNVVTYNTMIWGLSMVDRNEEAYGMFREMS 351
Query: 578 DHGFPP 583
+ GF P
Sbjct: 352 ECGFVP 357
>gi|255547888|ref|XP_002515001.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223546052|gb|EEF47555.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 466
Score = 60.1 bits (144), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 84/367 (22%), Positives = 154/367 (41%), Gaps = 24/367 (6%)
Query: 262 NVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFW 321
++ S++LV ++ + D+ K AL FRWAE KH +Y+ M ++G+ +D+
Sbjct: 46 SIHLSHELVDKLLFRFKDDWKSALGVFRWAESRAGYKHSPEAYDTMVDIMGKMKQMDQME 105
Query: 322 KVLDEMRSKGYEMEMETCVKVLGRFSE----RNMVKEAVDLYEFAMACKNKPSVNCCTFL 377
+L+EM KG + ++T K + RF+ N+++ L F + KN S+N
Sbjct: 106 FLLEEME-KGQHVTLKTVGKAMRRFAGARQWENVLRVFDKLGTFGLE-KNTESMNLLLDT 163
Query: 378 L---RKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAM 434
L RK+ +++++ + L S + N N N + V R+ E ++ M
Sbjct: 164 LCKERKVELAREIFLDLKSHI----SPNANT-----FNIFIHGWCKVNRVEEAYWTIQEM 214
Query: 435 EEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDL 494
+ G S I + E +D MEA G + S++ + +
Sbjct: 215 KGHGCTPCVISYSTIVQFYCHRSNFSKVYELLDEMEAQGLIPNVVTYTSVMSALAKSEEY 274
Query: 495 DKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYE 554
++A Q+M + G + L++T R +A + + + P +TY
Sbjct: 275 EEALQIAQRM-KSVGCKPDTLFYNSLIHTLGKAGRPEEAIQVFEVEMPNTGVPPNTSTYN 333
Query: 555 ELIKNLLVQRGFKDALSLLCLMKDHGF-PPFVD---PFIKYVSKSGTSDDAIA-FLKGMT 609
+I L + AL+LL ++ P V P +K K+G+ D ++ L M
Sbjct: 334 SMIAMLCHHSQERKALNLLKEIEASIICKPDVQTYYPLLKSCFKAGSIDSLLSQLLDDMV 393
Query: 610 SKRFPSM 616
K S+
Sbjct: 394 KKHHLSL 400
>gi|414871539|tpg|DAA50096.1| TPA: ATP binding protein [Zea mays]
Length = 692
Score = 60.1 bits (144), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 65/295 (22%), Positives = 125/295 (42%), Gaps = 16/295 (5%)
Query: 289 RWAEESGFVKH--------DESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCV 340
RW E + D+ ++N + + +DR ++L++M G ++ T
Sbjct: 384 RWEETEELLAEMFDKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLEHGCMPDVITYT 443
Query: 341 KVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQ-LDMR-LFSKVVRV 398
V+ F + ++ EAV L + AC KP+ T +L+ + +++ +D L S+++
Sbjct: 444 TVINGFCKEGLIDEAVMLLKSMTACGCKPNTISYTIVLKGLCSAERWVDAEDLMSQMI-- 501
Query: 399 FRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGK 458
+ G L N+++ L G + + ++LK M G S + L AGK
Sbjct: 502 --QQGCPLNPITFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGK 559
Query: 459 KDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAID 518
DEA E ++ M G ++ S+ G ++K F + + S A +
Sbjct: 560 TDEALELLNVMVNKGMSPNTIIYSSIASALSREGRINKVIQMFDNIQDTTIRSDA-VLYN 618
Query: 519 LLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLL 573
++++ C + A +F+ V P +TY LI+ L + K+A +L
Sbjct: 619 AVISSLCKRGETERAIEFLAYMVSS-GCVPNESTYTILIRGLASEGFVKEAQEML 672
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 74/349 (21%), Positives = 142/349 (40%), Gaps = 52/349 (14%)
Query: 322 KVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKI 381
+VL+++ ++G +++ C VL ++ V EA+ L + +P V +L+ +
Sbjct: 215 RVLEDLHARGCALDVGNCNLVLNAICDQGSVDEALHLLRDLPSFGCEPDVVSYNAVLKGL 274
Query: 382 VVSKQLD--MRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGF 439
++K+ L ++VR+ N++T N+++ L G +++L M E G
Sbjct: 275 CMAKRWGCVQELMEEMVRMACPP-NIVT---FNTLISYLCRNGLFERVHEVLAQMVEHGC 330
Query: 440 IASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAAD 499
M + I + G + A+E ++ M + G + +L+KG C A ++ +
Sbjct: 331 TPDIRMYATIIDGICKEGHLEVAHEILNRMPSYGLKPNVVCYNTLLKGLCSAERWEETEE 390
Query: 500 CFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKN 559
+M +K+ ++LV+ +C +N
Sbjct: 391 LLAEMFDKD-CPLDDVTFNILVDFFC--------------------------------QN 417
Query: 560 LLVQRGFKDALSLLCLMKDHGFPPFVDPFIKYVS---KSGTSDDAIAFLKGMTSKRF-PS 615
LV R + LL M +HG P V + ++ K G D+A+ LK MT+ P+
Sbjct: 418 GLVDR----VIELLEQMLEHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMTACGCKPN 473
Query: 616 MSVVLCLFAAFFQARRHSEAQDLLSK-----CPRYVRNHADVLNLLYSK 659
+ A R +A+DL+S+ CP ++N L K
Sbjct: 474 TISYTIVLKGLCSAERWVDAEDLMSQMIQQGCPLNPITFNTLINFLCKK 522
Score = 45.1 bits (105), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 65/292 (22%), Positives = 115/292 (39%), Gaps = 26/292 (8%)
Query: 303 SYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFA 362
++N + S L R +R +VL +M G ++ ++ + ++ A ++
Sbjct: 301 TFNTLISYLCRNGLFERVHEVLAQMVEHGCTPDIRMYATIIDGICKEGHLEVAHEILNRM 360
Query: 363 MACKNKPSVNCCTFLLRKIVV------SKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLK 416
+ KP+V C LL+ + +++L +F K + N+L D + L
Sbjct: 361 PSYGLKPNVVCYNTLLKGLCSAERWEETEELLAEMFDKDCPLDDVTFNILVDFFCQNGL- 419
Query: 417 ALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDV 476
V R+ E +L+ M E G + + + G DEA + M A G
Sbjct: 420 ----VDRVIE---LLEQMLEHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMTACGCKP 472
Query: 477 GDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKN---RAIDA 533
+ ++KG C A A D +M++ +G + L+N C K +AI+
Sbjct: 473 NTISYTIVLKGLCSAERWVDAEDLMSQMIQ-QGCPLNPITFNTLINFLCKKGLVEQAIEL 531
Query: 534 CK--FVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPP 583
K V+ C P +Y +I L +AL LL +M + G P
Sbjct: 532 LKQMLVNGC------SPDLISYSTVIDGLGKAGKTDEALELLNVMVNKGMSP 577
>gi|357143144|ref|XP_003572818.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74900,
mitochondrial-like [Brachypodium distachyon]
Length = 496
Score = 60.1 bits (144), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 58/214 (27%), Positives = 87/214 (40%), Gaps = 16/214 (7%)
Query: 430 ILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGS-------DVGDKMWV 482
+L+ M E G + + I AG+ A F M+ GS DV +
Sbjct: 226 LLRQMAESGIAPTKTTYNVILKGFFRAGQLQHAWNFFLQMKKRGSKDENCKPDVVS--YT 283
Query: 483 SLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVR 542
++I G VAG LDKA F +M KEG + L+ C K DA + +R
Sbjct: 284 TIIHGLGVAGQLDKARKLFDEM-SKEGCPPTIATYNALIQVICKKGNVEDAVTVFDDMIR 342
Query: 543 EYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPF---IKYVSKSGTSD 599
+ D P TY LI+ L A+ L+ MK+ G P V + I+Y + G D
Sbjct: 343 K-DYIPNVVTYTVLIRGLCHVGKIDRAMKLMERMKNEGCEPVVQTYNVLIRYSFEEGEMD 401
Query: 600 DAIAFLKGMTSKR--FPSMSVVLCLFAAFFQARR 631
A+ + M+ P+ + +A F +R
Sbjct: 402 KALHLFERMSKGEECLPNQDTYNIVISAMFVRKR 435
Score = 44.7 bits (104), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 59/284 (20%), Positives = 111/284 (39%), Gaps = 47/284 (16%)
Query: 258 LRDLNVTFSNDLVKFVVDKLGD------EPKKALIFFRWAEESGFVKHDESSYNAMASVL 311
+R L F D+V + + L D + +AL R ESG + +++YN +
Sbjct: 193 VRALERRFPPDVVTY--NTLADGWCRVKDTSRALDLLRQMAESG-IAPTKTTYNVILKGF 249
Query: 312 GREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSV 371
R + W +M+ +G + E C KP V
Sbjct: 250 FRAGQLQHAWNFFLQMKKRGSKDE--NC----------------------------KPDV 279
Query: 372 NCCTFLLRKIVVSKQLDMRLFSKVVRVFRE---NGNVLTDAMLNSVLKALISVGRMGECN 428
T ++ + V+ QLD K ++F E G T A N++++ + G + +
Sbjct: 280 VSYTTIIHGLGVAGQLD-----KARKLFDEMSKEGCPPTIATYNALIQVICKKGNVEDAV 334
Query: 429 KILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGH 488
+ M +I + + + L GK D A + M+ M+ G + + + LI+
Sbjct: 335 TVFDDMIRKDYIPNVVTYTVLIRGLCHVGKIDRAMKLMERMKNEGCEPVVQTYNVLIRYS 394
Query: 489 CVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAID 532
G++DKA F++M + E +++++ + RA D
Sbjct: 395 FEEGEMDKALHLFERMSKGEECLPNQDTYNIVISAMFVRKRAED 438
>gi|326520119|dbj|BAK03984.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 485
Score = 60.1 bits (144), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 89/459 (19%), Positives = 187/459 (40%), Gaps = 47/459 (10%)
Query: 120 QLELSGVVFTHEMVLKVLKNLESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGL 179
+L+ S + T ++ +VL+ L+++ A RFF W ++ + T +V
Sbjct: 55 ELDHSDLRVTPDVAERVLERLDNAGMLAYRFFEWARKQRRGGGCAHTVRSFHTVVASLAK 114
Query: 180 VQEF---WGLVDVMKKKGYGVASHVRNKMTEKFEKEGLESDLEKLKGIFATGSIDNSIEK 236
++++ W +V +M+++G M + + ++ + + G + N +
Sbjct: 115 IRQYQLMWDVVAIMRRQGVVNVETFGIIMRKYARAQKVDEAVYTFNVMEKYGVVPN-LAA 173
Query: 237 VASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGF 296
S +C + +S NV + ++ + + +G
Sbjct: 174 FNSLLCALCKSK-------------NVRKAQEI--------------------FEQMNGR 200
Query: 297 VKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAV 356
D +Y+ + GR + + KV +M G + ++ T ++ + V+EAV
Sbjct: 201 FSPDAKTYSILLEGWGRAPNLPKMRKVYSDMLDAGCQPDIVTYGIMVDSLCKTGRVEEAV 260
Query: 357 DLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVF--RENGNVLTDAMLNSV 414
+ + + +P+ TF+ +V + ++MR+ V +++G V + N++
Sbjct: 261 FVVQDMTSRGCQPT----TFIYSVLVHTYGVEMRIEDAVATFLDMQKDGIVPDVVVYNAL 316
Query: 415 LKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGS 474
+ A V + +++ ME G +S + I +L S GK DEA M
Sbjct: 317 VTAFCKVKKFDNAFRVMDDMEGHGITPNSRTWNIILNKLISLGKDDEAYRVFRRMIKRCQ 376
Query: 475 DVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDAC 534
D + +IK C L+ A ++ M K+ + +L+N C K AC
Sbjct: 377 PDSDT-YTMMIKMFCENDRLEMALKVWKYMRLKQFLPSM-HTFSVLINGLCDKGEVSQAC 434
Query: 535 KFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLL 573
+ + + E ++P +T+ +L + LL++ G KD L L
Sbjct: 435 VLLEDMI-EKGIRPPGSTFGKL-RQLLLKEGRKDVLEFL 471
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 82/354 (23%), Positives = 146/354 (41%), Gaps = 24/354 (6%)
Query: 226 ATGSIDNSIEKV--ASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKK 283
G D ++E A R+CK++ S +E +L ++ + D+ + V+++L +
Sbjct: 22 GVGGSDAAVEAFDPAKRLCKLIISCRQASGLEIELDHSDLRVTPDVAERVLERLDNAGML 81
Query: 284 ALIFFRWAEE---SGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCV 340
A FF WA + G H S++ + + L + W V+ MR +G + +ET
Sbjct: 82 AYRFFEWARKQRRGGGCAHTVRSFHTVVASLAKIRQYQLMWDVVAIMRRQGV-VNVETFG 140
Query: 341 KVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTF--LLRKIVVSKQLDMRLFSKVVRV 398
++ +++ V EAV Y F + K N F LL + SK + K +
Sbjct: 141 IIMRKYARAQKVDEAV--YTFNVMEKYGVVPNLAAFNSLLCALCKSKNV-----RKAQEI 193
Query: 399 FRE-NGNVLTDAMLNSVLKALISVGR---MGECNKILKAMEEGGFIASSNMKSKIAFRLS 454
F + NG DA S+L L GR + + K+ M + G + L
Sbjct: 194 FEQMNGRFSPDAKTYSIL--LEGWGRAPNLPKMRKVYSDMLDAGCQPDIVTYGIMVDSLC 251
Query: 455 SAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAG 514
G+ +EA + M + G ++ L+ + V ++ A F M +K+G
Sbjct: 252 KTGRVEEAVFVVQDMTSRGCQPTTFIYSVLVHTYGVEMRIEDAVATFLDM-QKDGIVPDV 310
Query: 515 YAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKD 568
+ LV +C K + D V + + + + P T+ +I N L+ G D
Sbjct: 311 VVYNALVTAFC-KVKKFDNAFRVMDDMEGHGITPNSRTW-NIILNKLISLGKDD 362
>gi|225453062|ref|XP_002266822.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04760,
chloroplastic-like [Vitis vinifera]
Length = 582
Score = 60.1 bits (144), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 62/315 (19%), Positives = 131/315 (41%), Gaps = 7/315 (2%)
Query: 300 DESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLY 359
D +YNA+ S + + I+ +VL+ M+++G+ ++ T ++G R + A+ +
Sbjct: 136 DVFAYNAVISGFCKVNRIEAATQVLNRMKARGFLPDIVTYNIMIGSLCNRRKLGLALKVL 195
Query: 360 EFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALI 419
+ + P+V T L+ +V ++ + K++ G + N++++ +
Sbjct: 196 DQLLLDNCMPTVITYTILIEATIVEGGINEAM--KLLEEMLARGLLPDMYTYNAIIRGMC 253
Query: 420 SVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDK 479
G + +++ ++ G + + + GK DE + + M + G +
Sbjct: 254 KEGMVERAAELITSLTSKGCKPDVISYNILLRAFLNQGKWDEGEKLVAEMFSRGCEPNKV 313
Query: 480 MWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHN 539
+ LI C G +D+A + M+EKE T Y+ D L++ C + R +D + +
Sbjct: 314 TYSILISSLCRFGRIDEAISVLKVMIEKELTPDT-YSYDPLISALCKEGR-LDLAIGIMD 371
Query: 540 CVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPFIKYVS---KSG 596
+ P Y ++ L AL + ++ G PP V + +S G
Sbjct: 372 YMISNGCLPDIVNYNTILAALCKNGNANQALEIFNKLRGMGCPPNVSSYNTMISALWSCG 431
Query: 597 TSDDAIAFLKGMTSK 611
A+ + M SK
Sbjct: 432 DRSRALGMVPAMISK 446
Score = 55.5 bits (132), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 76/340 (22%), Positives = 134/340 (39%), Gaps = 8/340 (2%)
Query: 303 SYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFA 362
+Y + E I+ K+L+EM ++G +M T ++ + MV+ A +L
Sbjct: 209 TYTILIEATIVEGGINEAMKLLEEMLARGLLPDMYTYNAIIRGMCKEGMVERAAELITSL 268
Query: 363 MACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVG 422
+ KP V LLR + + D K+V G + ++ +L G
Sbjct: 269 TSKGCKPDVISYNILLRAFLNQGKWDEG--EKLVAEMFSRGCEPNKVTYSILISSLCRFG 326
Query: 423 RMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWV 482
R+ E +LK M E + + L G+ D A MD+M ++G +
Sbjct: 327 RIDEAISVLKVMIEKELTPDTYSYDPLISALCKEGRLDLAIGIMDYMISNGCLPDIVNYN 386
Query: 483 SLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVR 542
+++ C G+ ++A + F K+ G + + +++ S A V +
Sbjct: 387 TILAALCKNGNANQALEIFNKL-RGMGCPPNVSSYNTMISALWSCGDRSRALGMVPAMIS 445
Query: 543 EYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPF---IKYVSKSGTSD 599
+ + P TY LI L ++A+ LL M+ GF P V + + + K D
Sbjct: 446 K-GVDPDEITYNSLISCLCRDGLVEEAIGLLDDMEQSGFRPTVISYNIVLLGLCKVRRID 504
Query: 600 DAIAFLKGMTSKRF-PSMSVVLCLFAAFFQARRHSEAQDL 638
DAI M K P+ + + L A +EA +L
Sbjct: 505 DAIGMFAEMIEKGCRPNETTYILLIEGIGFAGWRTEAMEL 544
Score = 42.0 bits (97), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 55/263 (20%), Positives = 103/263 (39%), Gaps = 4/263 (1%)
Query: 298 KHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVD 357
K D SYN + + D K++ EM S+G E T ++ + EA+
Sbjct: 274 KPDVISYNILLRAFLNQGKWDEGEKLVAEMFSRGCEPNKVTYSILISSLCRFGRIDEAIS 333
Query: 358 LYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKA 417
+ + + + P L+ + +LD+ + ++ NG + N++L A
Sbjct: 334 VLKVMIEKELTPDTYSYDPLISALCKEGRLDLAI--GIMDYMISNGCLPDIVNYNTILAA 391
Query: 418 LISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVG 477
L G + +I + G + + + + L S G + A + M + G D
Sbjct: 392 LCKNGNANQALEIFNKLRGMGCPPNVSSYNTMISALWSCGDRSRALGMVPAMISKGVDPD 451
Query: 478 DKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFV 537
+ + SLI C G +++A M E+ G + ++++ C R DA
Sbjct: 452 EITYNSLISCLCRDGLVEEAIGLLDDM-EQSGFRPTVISYNIVLLGLCKVRRIDDAIGMF 510
Query: 538 HNCVREYDLKPWHTTYEELIKNL 560
+ E +P TTY LI+ +
Sbjct: 511 AEMI-EKGCRPNETTYILLIEGI 532
>gi|224061569|ref|XP_002300545.1| predicted protein [Populus trichocarpa]
gi|222847803|gb|EEE85350.1| predicted protein [Populus trichocarpa]
Length = 567
Score = 60.1 bits (144), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 69/310 (22%), Positives = 134/310 (43%), Gaps = 19/310 (6%)
Query: 311 LGREDCIDRFWKV------LDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMA 364
+GR+D +R ++ L+ + KG++ ++ ++L + N +K+A + E +
Sbjct: 66 VGRKDTRNRDIRLNDAFFHLEFIVRKGHKPDVAQATQLLYDLCKSNKMKKATRVMEMTIE 125
Query: 365 CKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRM 424
P TFL+ + K+ ++ ++V ENG NS+++ L G +
Sbjct: 126 SGIIPDAASYTFLVNNLC--KRGNIGYAMQLVEKMEENGCPTNTVTYNSLVRGLCKHGNL 183
Query: 425 GECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKK---DEANEFMDHMEASGSDVGDKMW 481
+ ++L + G + + S F L +A K+ DEA + +D + A G +
Sbjct: 184 NQSLQLLDKLMRKGLVPNEFTHS---FLLEAAYKERGVDEAMKLLDGIIAKGGKPNLVSY 240
Query: 482 VSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCV 541
L+ G C G ++A F+ + K G + + ++++ + C + R +A + V
Sbjct: 241 NVLLTGLCKEGRTEEAIQFFRDLPSK-GFNPNVVSCNIILRSLCCEGRWEEANELVAEMD 299
Query: 542 REYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFV---DPFIKYVSKSGTS 598
E + P TY LI +L + A +L M F P +P I ++ K G +
Sbjct: 300 SE-ERSPSLVTYNILIGSLASHGRIQHAFQVLDEMMRASFQPSAATFNPIISHLCKEGKA 358
Query: 599 DDAIAFLKGM 608
D + L M
Sbjct: 359 DLVVKCLDQM 368
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 67/340 (19%), Positives = 141/340 (41%), Gaps = 13/340 (3%)
Query: 313 REDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVN 372
+E +D K+LD + +KG + + + +L + +EA+ + + P+V
Sbjct: 214 KERGVDEAMKLLDGIIAKGGKPNLVSYNVLLTGLCKEGRTEEAIQFFRDLPSKGFNPNVV 273
Query: 373 CCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILK 432
C +LR + + + +++V + N ++ +L S GR+ ++L
Sbjct: 274 SCNIILRSLCCEGRWEEA--NELVAEMDSEERSPSLVTYNILIGSLASHGRIQHAFQVLD 331
Query: 433 AMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAG 492
M F S+ + I L GK D + +D M + D + + I C G
Sbjct: 332 EMMRASFQPSAATFNPIISHLCKEGKADLVVKCLDQMIHHCCNPNDGTF-NAIAVLCEGG 390
Query: 493 DLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTT 552
+ +A Q + K+ +S + ++++ C K A + ++ ++ P T
Sbjct: 391 RVQRAFSIIQSLGNKQNSSTHDFYRG-VISSLCRKGNTYPAFQLLYEMIQS-GFVPDPYT 448
Query: 553 YEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPF---IKYVSKSGTSDDAIAFLKGMT 609
Y LI+ L V+ +AL + L++++ + P + F I KSG +D ++ + M
Sbjct: 449 YSSLIRGLCVEGMLDEALEIFRLLEENDYRPILGNFNALILGFCKSGRTDLSLEIFEMMI 508
Query: 610 SKRFPSMSVVLCLFAAFFQARRHSEAQDLLSKCPR--YVR 647
K + + + H E ++L ++ + Y+R
Sbjct: 509 LKGYTPNETT---YTILVEGIAHEEEKELAAEVLKELYIR 545
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 95/433 (21%), Positives = 169/433 (39%), Gaps = 67/433 (15%)
Query: 155 LEKESERLSSKTYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRNKMTEKF----- 209
+E+ ++ TYN ++R + HG + + L+D + +KG V N+ T F
Sbjct: 158 MEENGCPTNTVTYNSLVRGLCKHGNLNQSLQLLDKLMRKGL-----VPNEFTHSFLLEAA 212
Query: 210 -EKEGLESDLEKLKGIFATGSIDN--SIEKVASRICKVVRSDIWGDDVERQLRDL-NVTF 265
++ G++ ++ L GI A G N S + + +CK R+ ++ + RDL + F
Sbjct: 213 YKERGVDEAMKLLDGIIAKGGKPNLVSYNVLLTGLCKEGRT----EEAIQFFRDLPSKGF 268
Query: 266 SNDLV--KFVVDKLGDEPKKALIFFRWAEESGFVKHDES--------SYNAMASVLGRED 315
+ ++V ++ L E RW E + V +S +YN + L
Sbjct: 269 NPNVVSCNIILRSLCCEG-------RWEEANELVAEMDSEERSPSLVTYNILIGSLASHG 321
Query: 316 CIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCC- 374
I ++VLDEM ++ T ++ + + + C ++ +CC
Sbjct: 322 RIQHAFQVLDEMMRASFQPSAATFNPIISHLCKEGKA-------DLVVKCLDQMIHHCCN 374
Query: 375 ----TFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKI 430
TF ++ R FS +++ N T V+ +L G ++
Sbjct: 375 PNDGTFNAIAVLCEGGRVQRAFS-IIQSLGNKQNSSTHDFYRGVISSLCRKGNTYPAFQL 433
Query: 431 LKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCV 490
L M + GF+ S + L G DEA E +E + + +LI G C
Sbjct: 434 LYEMIQSGFVPDPYTYSSLIRGLCVEGMLDEALEIFRLLEENDYRPILGNFNALILGFCK 493
Query: 491 AGDLDKAADCFQKMVEK-------------EGTSH---AGYAIDLLVNTYCSKNRAIDAC 534
+G D + + F+ M+ K EG +H A ++L Y R +
Sbjct: 494 SGRTDLSLEIFEMMILKGYTPNETTYTILVEGIAHEEEKELAAEVLKELYI---RQVMRR 550
Query: 535 KFVHNCVREYDLK 547
V V +YDLK
Sbjct: 551 NTVERLVMQYDLK 563
Score = 43.5 bits (101), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 48/238 (20%), Positives = 95/238 (39%), Gaps = 43/238 (18%)
Query: 409 AMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDH 468
A +L L +M + ++++ E G I + + + L G A + ++
Sbjct: 98 AQATQLLYDLCKSNKMKKATRVMEMTIESGIIPDAASYTFLVNNLCKRGNIGYAMQLVEK 157
Query: 469 MEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKN 528
ME +G + SL++G C G+L+++ K++ K
Sbjct: 158 MEENGCPTNTVTYNSLVRGLCKHGNLNQSLQLLDKLMRK--------------------- 196
Query: 529 RAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLL-CLMKDHGFPPFV-- 585
L P T+ L++ +RG +A+ LL ++ G P V
Sbjct: 197 ----------------GLVPNEFTHSFLLEAAYKERGVDEAMKLLDGIIAKGGKPNLVSY 240
Query: 586 DPFIKYVSKSGTSDDAIAFLKGMTSKRFPSMSVVLC--LFAAFFQARRHSEAQDLLSK 641
+ + + K G +++AI F + + SK F + +VV C + + R EA +L+++
Sbjct: 241 NVLLTGLCKEGRTEEAIQFFRDLPSKGF-NPNVVSCNIILRSLCCEGRWEEANELVAE 297
>gi|302775582|ref|XP_002971208.1| hypothetical protein SELMODRAFT_94745 [Selaginella moellendorffii]
gi|300161190|gb|EFJ27806.1| hypothetical protein SELMODRAFT_94745 [Selaginella moellendorffii]
Length = 599
Score = 60.1 bits (144), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 106/504 (21%), Positives = 195/504 (38%), Gaps = 46/504 (9%)
Query: 110 KFSDVNDISKQLELSGVVFTHEMVLKVLKNL--ESSPDEARRFFNWVLEKESERLSSKTY 167
K +D ++ ++L SGV + ++ L +S D+AR F + + S TY
Sbjct: 25 KLNDARNLFQKLLHSGVTPSTVAYTSLIHGLCMANSFDDARELFAD-MNRRGCPPSPVTY 83
Query: 168 NLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRNKMTEKFEKEGL--ESDLEKLKGIF 225
N+M+ G+++E L+ M + G HV + +T +GL S +E+ +F
Sbjct: 84 NVMIDASCKRGMLEEACDLIKKMIEDG-----HVPDVVTYNTVMDGLCKSSRVEEALLLF 138
Query: 226 ATGSIDNSIEKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKAL 285
N +E++ C R R N + +D+
Sbjct: 139 ------NEMERLG---CTPNR------------RSHNTIILGLCQQSKIDQ------ACQ 171
Query: 286 IFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGR 345
+F E+ + D SY + L + ++ +K+ M G T V+
Sbjct: 172 VFHEM--EAKDIPPDSWSYGILIDGLAKAGKLNEAYKLFQRMLDSGITPSAVTYNVVIHG 229
Query: 346 FSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNV 405
+ EA++L++ + +PS L+ +LD ++++ ++G+V
Sbjct: 230 MCLAYTLDEALELFKSMRSKGCRPSRFTFNILIDAHCKRGKLDEAF--RLLKRMTDDGHV 287
Query: 406 LTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEF 465
++++ L S+ R+ + +L+ M + + ++ + L AG+ EA E
Sbjct: 288 PDVVTYSTLISGLCSIARVDDARHLLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREV 347
Query: 466 MDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYC 525
+D M +SG + +L+ GHC AG ++A + MV + G + LV+ C
Sbjct: 348 LDAMVSSGQSPDVVTYNTLVHGHCRAGQTERARELLSDMVAR-GLAPNVVTYTALVSGLC 406
Query: 526 SKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPP-- 583
NR +AC ++ P TY LI L L M G P
Sbjct: 407 KANRLPEACGVFAQ-MKSSGCAPNLFTYTALILGFCSAGQVDGGLKLFGEMVCAGISPDH 465
Query: 584 -FVDPFIKYVSKSGTSDDAIAFLK 606
+ KSG S A+ L+
Sbjct: 466 VVYGTLAAELCKSGRSARALEILR 489
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 60/251 (23%), Positives = 105/251 (41%), Gaps = 10/251 (3%)
Query: 395 VVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLS 454
+++ E+G+V N+V+ L R+ E + ME G + + I L
Sbjct: 102 LIKKMIEDGHVPDVVTYNTVMDGLCKSSRVEEALLLFNEMERLGCTPNRRSHNTIILGLC 161
Query: 455 SAGKKDEANEFMDHMEASGSDVGDKMWVS--LIKGHCVAGDLDKAADCFQKMVEKEGTSH 512
K D+A + MEA D+ W LI G AG L++A FQ+M++ G +
Sbjct: 162 QQSKIDQACQVFHEMEAK--DIPPDSWSYGILIDGLAKAGKLNEAYKLFQRMLDS-GITP 218
Query: 513 AGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSL 572
+ +++++ C +A + + +R +P T+ LI + +A L
Sbjct: 219 SAVTYNVVIHGMCLAYTLDEALELFKS-MRSKGCRPSRFTFNILIDAHCKRGKLDEAFRL 277
Query: 573 LCLMKDHGFPPFVDPFIKYVS---KSGTSDDAIAFLKGMTSKRF-PSMSVVLCLFAAFFQ 628
L M D G P V + +S DDA L+ M ++ P++ L +
Sbjct: 278 LKRMTDDGHVPDVVTYSTLISGLCSIARVDDARHLLEDMVKRQCKPTVVTQNTLIHGLCK 337
Query: 629 ARRHSEAQDLL 639
A R EA+++L
Sbjct: 338 AGRIKEAREVL 348
Score = 44.3 bits (103), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 61/300 (20%), Positives = 116/300 (38%), Gaps = 12/300 (4%)
Query: 346 FSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLD--MRLFSKVVRVFRENG 403
++ + +A +L++ + PS T L+ + ++ D LF+ + R G
Sbjct: 20 LAKAGKLNDARNLFQKLLHSGVTPSTVAYTSLIHGLCMANSFDDARELFADMNR----RG 75
Query: 404 NVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEAN 463
+ N ++ A G + E ++K M E G + + + L + + +EA
Sbjct: 76 CPPSPVTYNVMIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNTVMDGLCKSSRVEEAL 135
Query: 464 EFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNT 523
+ ME G + ++I G C +D+A F +M E + ++ +L++
Sbjct: 136 LLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQVFHEM-EAKDIPPDSWSYGILIDG 194
Query: 524 YCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPP 583
+ +A K + + + P TY +I + + +AL L M+ G P
Sbjct: 195 LAKAGKLNEAYKLFQRML-DSGITPSAVTYNVVIHGMCLAYTLDEALELFKSMRSKGCRP 253
Query: 584 ---FVDPFIKYVSKSGTSDDAIAFLKGMT-SKRFPSMSVVLCLFAAFFQARRHSEAQDLL 639
+ I K G D+A LK MT P + L + R +A+ LL
Sbjct: 254 SRFTFNILIDAHCKRGKLDEAFRLLKRMTDDGHVPDVVTYSTLISGLCSIARVDDARHLL 313
>gi|357504477|ref|XP_003622527.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355497542|gb|AES78745.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 721
Score = 60.1 bits (144), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 112/529 (21%), Positives = 185/529 (34%), Gaps = 139/529 (26%)
Query: 227 TGSIDNSIE-----------KVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVD 275
T I+N +E K A I ++ W D++ L + S V F
Sbjct: 37 TQKINNEVEQQQQPRSRNNSKTAKTIANLINYKPWSDEL---LSSFTTSLSKTTV-FQTL 92
Query: 276 KLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCI------------------ 317
+ P KA +FF W E GF H+ +Y M +LGRE +
Sbjct: 93 RHIKVPTKAFLFFNWIHEKGF-SHNPQTYFIMLEILGREKNLNIARNFLYSIEKRSNGEV 151
Query: 318 ---DRFW-----------------KVLDEMRSKGYE---MEMETCVKVLGRFSERNMVKE 354
DRF+ K+ + M+ G + + + VL + NM KE
Sbjct: 152 KLEDRFFNSLIRSYGEAGLFKESVKLFENMKLIGVSPGVVTFNSVLLVLLKRGRTNMAKE 211
Query: 355 AVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRL-FSKVVRVFRENGNVLTDAMLNS 413
D E KP L+R + +D F K + F + +V+T N+
Sbjct: 212 VYD--EMLKTYGVKPDTYTYNILIRGFCKNSMVDEGFYFFKEMTSFDCDPDVVT---YNT 266
Query: 414 VLKALISVGRM-----------------------------GECNK--------ILKAMEE 436
++ L G++ G C K IL+ M
Sbjct: 267 LVDGLCRAGKIKVAHNLVNGMSKKCKDLSPDVVTYTTLIRGYCRKQEVDEALDILEEMNG 326
Query: 437 GGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDK-MWVSLIKGHCVAGDLD 495
G + + + L A K D+ E ++ M+ G + D + +LI HC AG+LD
Sbjct: 327 RGLKPNIVTYNTLIKGLCEAQKWDKMKEILEQMKGDGGSIPDACTFNTLINSHCCAGNLD 386
Query: 496 KAADCFQKMVEKEGTS-HAGYAIDLLVNTYCSKNRAIDACKFV----------------- 537
+A F+ M + E ++ A Y++ L+ T C K A
Sbjct: 387 EAFKVFENMKKLEVSADSASYSV--LIRTLCQKGDYGKAEMLFDELFEKEILLSSYGPKP 444
Query: 538 ----HNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPFIKYVS 593
+ C+ +Y + T E + L++RG +D LS ++ H
Sbjct: 445 LAASYKCMFQYLCENGKTKKAERVLRQLMKRGTQDPLSYQIVILGH-------------C 491
Query: 594 KSGTSDDAIAFLKGMTSKRF-PSMSVVLCLFAAFFQARRHSEAQDLLSK 641
K G+ ++ L M + F P + + L F + + A++ L K
Sbjct: 492 KEGSYENGYGLLVWMLRRDFLPDIDIYDYLIDGFLRKDKPLLAKETLEK 540
>gi|297833172|ref|XP_002884468.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297330308|gb|EFH60727.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 598
Score = 60.1 bits (144), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 79/382 (20%), Positives = 152/382 (39%), Gaps = 41/382 (10%)
Query: 296 FVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEA 355
F + D +YNA+ + + + ID +VLD MRSK + + T ++G R + A
Sbjct: 149 FGQPDVFAYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLA 208
Query: 356 VDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVL 415
+ + + ++ +P+V T L+ ++ +D L K++ G N+++
Sbjct: 209 LKVLDQLLSDNCQPTVITYTILIEATMLEGGVDEAL--KLLDEMLSRGLKPDMFTYNTII 266
Query: 416 KALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSD 475
+ + G + ++++ +E G + + L + GK +E + M M + D
Sbjct: 267 RGMCKEGMVDRAFEMIRNLELKGCEPDVISYNILLRALLNQGKWEEGEKLMTKMFSEKCD 326
Query: 476 VGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACK 535
+ LI C G +++A + + M EK G + Y+ D L+ +C + R A +
Sbjct: 327 PNVVTYSILITTLCRDGKIEEAMNLLKLMKEK-GLTPDAYSYDPLIAAFCREGRLDVAIE 385
Query: 536 FVHNCVRE---YDLKPWHTTYEELIKNLLVQRGFK------------------------- 567
F+ + + D+ ++T L KN + +
Sbjct: 386 FLETMISDGCLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVGCSPNSSSYNTMFSALW 445
Query: 568 ------DALSLLCLMKDHGFPP---FVDPFIKYVSKSGTSDDAIAFLKGMTSKRF-PSMS 617
AL ++ M +G P + I + + G D A L M S F PS+
Sbjct: 446 SSGDKIRALHMILEMVSNGIDPDEITYNSMISCLCREGMVDKAFELLVDMRSCEFHPSVV 505
Query: 618 VVLCLFAAFFQARRHSEAQDLL 639
+ F +A R +A D+L
Sbjct: 506 TYNIVLLGFCKAHRIEDAIDVL 527
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 62/294 (21%), Positives = 145/294 (49%), Gaps = 16/294 (5%)
Query: 116 DISKQLELSGV---VFTHEMVLKVLKNLESSPDEARRFFNWVLEKESERLSSKTYNLMLR 172
++ + LEL G V ++ ++L+ L N + +E + + ++ + + TY++++
Sbjct: 280 EMIRNLELKGCEPDVISYNILLRALLN-QGKWEEGEKLMTKMFSEKCDP-NVVTYSILIT 337
Query: 173 IVGVHGLVQEFWGLVDVMKKKGYGVASHVRNKMTEKFEKEG-LESDLEKLKGIFATGSID 231
+ G ++E L+ +MK+KG ++ + + F +EG L+ +E L+ + + G +
Sbjct: 338 TLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLETMISDGCLP 397
Query: 232 NSIE--KVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKL---GDEPKKALI 286
+ + V + +CK ++D ++ +L ++ + ++ + L GD+ + +
Sbjct: 398 DIVNYNTVLATLCKNGKAD-QALEIFGKLGEVGCSPNSSSYNTMFSALWSSGDKIRALHM 456
Query: 287 FFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRF 346
S + DE +YN+M S L RE +D+ +++L +MRS + + T VL F
Sbjct: 457 ILEMV--SNGIDPDEITYNSMISCLCREGMVDKAFELLVDMRSCEFHPSVVTYNIVLLGF 514
Query: 347 SERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVS--KQLDMRLFSKVVRV 398
+ + +++A+D+ + + +P+ T L+ I + + M L + +VR+
Sbjct: 515 CKAHRIEDAIDVLDSMVGNGCRPNETTYTVLIEGIGFAGYRAEAMELANDLVRI 568
Score = 55.8 bits (133), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 70/292 (23%), Positives = 126/292 (43%), Gaps = 10/292 (3%)
Query: 323 VLDEMRSKGYEMEMETCVKVL-GRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKI 381
+L+ M KGY ++ C K++ G F+ RN V +AV + E + +P V L+
Sbjct: 107 LLETMVRKGYNPDVILCTKLIKGFFTLRN-VPKAVRVMEI-LEKFGQPDVFAYNALINGF 164
Query: 382 VVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIA 441
++D ++V+ R N ++ +L S G++ K+L +
Sbjct: 165 CKMNRIDDA--TRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLALKVLDQLLSDNCQP 222
Query: 442 SSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCF 501
+ + + G DEA + +D M + G + ++I+G C G +D+A +
Sbjct: 223 TVITYTILIEATMLEGGVDEALKLLDEMLSRGLKPDMFTYNTIIRGMCKEGMVDRAFEMI 282
Query: 502 QKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLL 561
+ + E +G + ++L+ ++ + + K + E P TY LI L
Sbjct: 283 RNL-ELKGCEPDVISYNILLRALLNQGKWEEGEKLMTKMFSE-KCDPNVVTYSILITTLC 340
Query: 562 VQRGFKDALSLLCLMKDHGFPPFV---DPFIKYVSKSGTSDDAIAFLKGMTS 610
++A++LL LMK+ G P DP I + G D AI FL+ M S
Sbjct: 341 RDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLETMIS 392
Score = 40.4 bits (93), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 68/298 (22%), Positives = 121/298 (40%), Gaps = 37/298 (12%)
Query: 297 VKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAV 356
+K D +YN + + +E +DR ++++ + KG E ++ + +L + +E
Sbjct: 255 LKPDMFTYNTIIRGMCKEGMVDRAFEMIRNLELKGCEPDVISYNILLRALLNQGKWEEGE 314
Query: 357 DLYEFAMACKNKPSVNCCTFL---------------LRKIVVSKQL--DMRLFSKVVRVF 399
L + K P+V + L L K++ K L D + ++ F
Sbjct: 315 KLMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAF 374
Query: 400 RENG----------NVLTDAML------NSVLKALISVGRMGECNKILKAMEEGGFIASS 443
G +++D L N+VL L G+ + +I + E G +S
Sbjct: 375 CREGRLDVAIEFLETMISDGCLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVGCSPNS 434
Query: 444 NMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQK 503
+ + + L S+G K A + M ++G D + + S+I C G +DKA +
Sbjct: 435 SSYNTMFSALWSSGDKIRALHMILEMVSNGIDPDEITYNSMISCLCREGMVDKAFELLVD 494
Query: 504 MVEKE-GTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNL 560
M E S Y I LL +C +R DA + + V +P TTY LI+ +
Sbjct: 495 MRSCEFHPSVVTYNIVLL--GFCKAHRIEDAIDVLDSMVGN-GCRPNETTYTVLIEGI 549
>gi|356508608|ref|XP_003523047.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g18900-like [Glycine max]
Length = 879
Score = 60.1 bits (144), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 82/392 (20%), Positives = 151/392 (38%), Gaps = 17/392 (4%)
Query: 207 EKFEKEGLESDLEKLKGIFATGSIDNSIEKVASRICKVVRSDIWGDDVERQLRDLNVTFS 266
E F K DL GI T + V + +++ WG E+ L +LN +
Sbjct: 292 ESFNKH--TRDLNMPAGIVPTKRHFTNSGHVVEVVKDILKQLRWGPATEKTLYNLNFSID 349
Query: 267 NDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDE 326
++ +L D A+ FF W + HD +Y M +LGR K+L++
Sbjct: 350 AYQANQILKQLQDH-SVAVGFFCWLKRQPGFWHDGHTYTTMVGILGRAREFGAINKLLEQ 408
Query: 327 MRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYE--FAMACKNKPSVNCCTFLLRKIVVS 384
M G + + T +++ + N ++EA++++ M C+ C +
Sbjct: 409 MVKDGCQPNVVTYNRLIHSYGRANYLREALNVFNQMQEMGCEPDRVTYCTLIDIHAKAGF 468
Query: 385 KQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSN 444
+ M ++ ++ V M+N + K+ G + +++ M + G + +
Sbjct: 469 LDVAMSMYERMQEVGLSPDTFTYSVMINCLGKS----GNLSAAHRLFCEMVDQGCVPNIV 524
Query: 445 MKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIK---GHCVAGDLDKAADCF 501
+ + + A A E M+ +G DK+ S++ GHC G L++A F
Sbjct: 525 TYNILIALQAKARNYQTALELYRDMQNAGFKP-DKVTYSIVMEVLGHC--GYLEEAEAVF 581
Query: 502 QKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLL 561
+M + LLV+ + A ++ H +R L P T L+ L
Sbjct: 582 FEMRQNHWVPDEP-VYGLLVDLWGKAGNVEKAWEWYHTMLRA-GLLPNVPTCNSLLSAFL 639
Query: 562 VQRGFKDALSLLCLMKDHGFPPFVDPFIKYVS 593
DA +LL M G P + + +S
Sbjct: 640 RVHRLPDAYNLLQNMVTLGLNPSLQTYTLLLS 671
>gi|255547043|ref|XP_002514579.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223546183|gb|EEF47685.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 840
Score = 60.1 bits (144), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 75/355 (21%), Positives = 150/355 (42%), Gaps = 12/355 (3%)
Query: 293 ESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMV 352
E+ ++ D +YN +A I+ W ++ +M KG + T ++ + V
Sbjct: 343 ENHGLEPDMVTYNILAKGFRLLGLINGAWNIIQKMLIKGPNPNLVTYTVLICGHCQIGNV 402
Query: 353 KEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDM--RLFSKVVRVFRENGNVLTDAM 410
+EA+ LY+ ++ + S+ T LL + S+Q+D+ +LF ++ NG
Sbjct: 403 EEALKLYKEMISHGFQLSIISSTVLLGSLCKSRQVDVAFKLFCEM----EANGLRPDLIT 458
Query: 411 LNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHME 470
++++ L G + + + + M I +S + I L GK +A + D++
Sbjct: 459 YSTLIHGLCKQGEVQQAILLYEKMCSNRIIPNSLIHGAILMGLCEKGKISQARMYFDYLI 518
Query: 471 ASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRA 530
S + ++ +I G+ G+ +A ++++ EK G S + L+ +C NR
Sbjct: 519 TSNLSLDIILYNIMIDGYIKRGNTREAVKLYKQLGEK-GISPTIVTFNSLMYGFCI-NRK 576
Query: 531 IDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPF-- 588
+ + + + ++ + L+P TY L+ + + L LL MK P +
Sbjct: 577 LSQARRLLDTIKLHGLEPNAVTYTTLMNVYCEEGNMQSLLELLSEMKAKAIGPTHITYTV 636
Query: 589 -IKYVSKSGTSDDAIAFLKGMTSKRF-PSMSVVLCLFAAFFQARRHSEAQDLLSK 641
IK + K ++ L+ M + P + AF +AR +A L K
Sbjct: 637 VIKGLCKQWKLQESCQLLEDMDAVGLTPDQVSYNTIIQAFCKARDMRKAFQLYDK 691
>gi|297844992|ref|XP_002890377.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297336219|gb|EFH66636.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 537
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 83/428 (19%), Positives = 169/428 (39%), Gaps = 61/428 (14%)
Query: 265 FSNDLVKFVVDKLGD-----EPKKALIFFRWA-EESGFVKHDESSYNAMASVLGREDCID 318
S +V+ V++K G ++L FF WA + + YN M + G+ D
Sbjct: 109 ISPSVVRCVIEKCGSVRHGIPLHQSLAFFNWATSRDDYDQKSPHPYNEMIDLAGKVRQFD 168
Query: 319 RFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAV-------------DLYEFAMAC 365
W ++D M+S+ E+ +ET ++ R+ + EAV D F++
Sbjct: 169 LAWHLIDLMKSRNVEISIETFTILIRRYVRAGLASEAVHCFNRMEDYGCVPDQIAFSIVI 228
Query: 366 KN---------------------KPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRE--- 401
N +P V T L+R + ++ S+ +VF++
Sbjct: 229 SNLSRKRRASEAQSFFDSLKDRFEPDVIVYTNLVRGWCRAGEI-----SEAEKVFKDMKL 283
Query: 402 ---NGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGK 458
NV T ++ V+ AL G++ + + M + G ++ + + AG+
Sbjct: 284 AGIEPNVYTYSI---VIDALCRCGQISRAHDVFADMLDSGCAPNAITFNNLMRVHVKAGR 340
Query: 459 KDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAID 518
++ + + M+ G + + LI+ HC +L+ A M++K+ +A
Sbjct: 341 PEKVLQVYNQMKKLGCEPDTITYNFLIETHCRDENLENAVKVLNTMIKKKCEVNASTFNT 400
Query: 519 LLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKD 578
+ Y K R ++ +++ + E +P TY L++ + L + M D
Sbjct: 401 IF--RYIEKKRDVNGAHRMYSKMMEAKCEPNTVTYNILMRMFAGSKSTDMVLKMKKDMDD 458
Query: 579 HGFPPFVDPF---IKYVSKSGTSDDAIAFLKGMTSKR--FPSMSVVLCLFAAFFQARRHS 633
P V+ + + G ++A K M ++ PS+S+ + A +A +
Sbjct: 459 KEVEPNVNTYRLLVTMFCGMGHWNNAYKLFKEMVEEKCLTPSLSLYEMVLAQLRRAGQLK 518
Query: 634 EAQDLLSK 641
+ ++L+ K
Sbjct: 519 KHEELVEK 526
Score = 40.0 bits (92), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 65/267 (24%), Positives = 113/267 (42%), Gaps = 11/267 (4%)
Query: 210 EKEGLESDLEKLKGIFATGSIDNSIEKVASRICKVVRS-DIWGDDVERQLRDLNVTFSND 268
E E + D+ KL GI + + R ++ R+ D++ D ++ +TF N+
Sbjct: 273 EAEKVFKDM-KLAGIEPNVYTYSIVIDALCRCGQISRAHDVFADMLDSGCAPNAITF-NN 330
Query: 269 LVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMR 328
L++ V K G P+K L + ++ G + D +YN + R++ ++ KVL+ M
Sbjct: 331 LMRVHV-KAG-RPEKVLQVYNQMKKLG-CEPDTITYNFLIETHCRDENLENAVKVLNTMI 387
Query: 329 SKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLD 388
K E+ T + ++ V A +Y M K +P+ L+R SK D
Sbjct: 388 KKKCEVNASTFNTIFRYIEKKRDVNGAHRMYSKMMEAKCEPNTVTYNILMRMFAGSKSTD 447
Query: 389 MRLFSKVVRVFRE-NGNVLTDAMLNSVLKALISVGRMGECNKILKAM-EEGGFIASSNMK 446
M L K +E NV T +L + +G K+ K M EE S ++
Sbjct: 448 MVLKMKKDMDDKEVEPNVNTYRLL---VTMFCGMGHWNNAYKLFKEMVEEKCLTPSLSLY 504
Query: 447 SKIAFRLSSAGKKDEANEFMDHMEASG 473
+ +L AG+ + E ++ M G
Sbjct: 505 EMVLAQLRRAGQLKKHEELVEKMIQKG 531
>gi|115472343|ref|NP_001059770.1| Os07g0513200 [Oryza sativa Japonica Group]
gi|27818007|dbj|BAC55770.1| putative CRP1 protein [Oryza sativa Japonica Group]
gi|50509504|dbj|BAD31185.1| putative CRP1 protein [Oryza sativa Japonica Group]
gi|113611306|dbj|BAF21684.1| Os07g0513200 [Oryza sativa Japonica Group]
gi|215715304|dbj|BAG95055.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 754
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 83/358 (23%), Positives = 131/358 (36%), Gaps = 45/358 (12%)
Query: 303 SYNAMASVLGREDCIDRFWKVLDEMRSK-----------GYEM--EMETCVKVLGRFSER 349
SYN + L I ++ DEM S GY E+ET +K+L + R
Sbjct: 255 SYNILLKALCTAGRIKDAHQLFDEMASPPDVVTYGIMVHGYCTLSELETAIKLLSEMAAR 314
Query: 350 NMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRE---NGNVL 406
+ V V++ D S VRV + +G VL
Sbjct: 315 GLELNPVAYTS---------------------VIALLCDEGQVSDAVRVVEDMVMHGVVL 353
Query: 407 TDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFM 466
A+ +V+ G + M++ G A + + L AG+ EA +
Sbjct: 354 DAAVFTTVMSGFCRKGDLAAARNWFDEMQKRGLAADGVTYTALINGLCRAGELKEAERVL 413
Query: 467 DHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCS 526
ME G DV + LI G+C G + +A KMV+K T + L + C
Sbjct: 414 QEMEDKGLDVDAVTYTVLIDGYCKVGKMTEAFLVHNKMVQKRVTPNV-VTYTALSDGLCK 472
Query: 527 KNRAIDACKFVHN-CVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFV 585
+ A + +H C + +L + TY LI L + A+ + M + G P V
Sbjct: 473 QGDVCAANELLHEMCSKGLELNIF--TYNSLINGLCKAGNLEQAMRTMIDMDEAGLKPDV 530
Query: 586 DPF---IKYVSKSGTSDDAIAFLKGMTSKRF-PSMSVVLCLFAAFFQARRHSEAQDLL 639
+ I + +S D A + L+ M K P++ L F + R + LL
Sbjct: 531 YTYTTIIGALCQSKELDRAHSLLQEMLDKGIKPTIVTYNVLMNGFCMSGRVEGGKRLL 588
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 91/449 (20%), Positives = 182/449 (40%), Gaps = 33/449 (7%)
Query: 145 DEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLVDVMKKK----GYGVASH 200
DEA + F + EK ++ +YN++L+ + G +++ L D M YG+ H
Sbjct: 239 DEAVQLFQELPEK-----NTCSYNILLKALCTAGRIKDAHQLFDEMASPPDVVTYGIMVH 293
Query: 201 VRNKMTEKFEKEGLESDLEKLKGIFATGSIDNSIEKVASRICKVVRSDIWGDDVERQLRD 260
++E LE+ ++ L + A G N + + + ++ + D R + D
Sbjct: 294 GYCTLSE------LETAIKLLSEMAARGLELNPV--AYTSVIALLCDEGQVSDAVRVVED 345
Query: 261 L--------NVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLG 312
+ F+ + F + GD A +F ++ G D +Y A+ + L
Sbjct: 346 MVMHGVVLDAAVFTTVMSGFC--RKGDL-AAARNWFDEMQKRGLAA-DGVTYTALINGLC 401
Query: 313 REDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVN 372
R + +VL EM KG +++ T ++ + + + EA ++ + + P N
Sbjct: 402 RAGELKEAERVLQEMEDKGLDVDAVTYTVLIDGYCKVGKMTEAFLVHNKMVQKRVTP--N 459
Query: 373 CCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILK 432
T+ + KQ D+ ++++ G L NS++ L G + + + +
Sbjct: 460 VVTYTALSDGLCKQGDVCAANELLHEMCSKGLELNIFTYNSLINGLCKAGNLEQAMRTMI 519
Query: 433 AMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAG 492
M+E G + I L + + D A+ + M G + L+ G C++G
Sbjct: 520 DMDEAGLKPDVYTYTTIIGALCQSKELDRAHSLLQEMLDKGIKPTIVTYNVLMNGFCMSG 579
Query: 493 DLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTT 552
++ + M+EK + + L+ YC + + + + ++ + ++ P T
Sbjct: 580 RVEGGKRLLEWMLEKNIHPNTT-TYNSLMKQYCIE-KNMKSTTEIYKGMLSQEVVPNENT 637
Query: 553 YEELIKNLLVQRGFKDALSLLCLMKDHGF 581
Y LIK R K+AL M + GF
Sbjct: 638 YNILIKGHCKARNMKEALYFHSEMIEKGF 666
>gi|222641578|gb|EEE69710.1| hypothetical protein OsJ_29377 [Oryza sativa Japonica Group]
Length = 577
Score = 59.7 bits (143), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 73/313 (23%), Positives = 123/313 (39%), Gaps = 33/313 (10%)
Query: 303 SYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFA 362
+Y M L EDCI + EM+ G + T ++ +R+ +K A+ Y
Sbjct: 210 TYTTMICALCEEDCIGDAEGLFLEMKEAGMRPNLYTYNALMSSHFKRDNIKHALVFYYDL 269
Query: 363 MACKNKPSVNCCTFLL------RKIVVSKQ--LDMRLF----------SKVVRVFRENGN 404
+ C P+ T L+ +I +K LDM + S + FR
Sbjct: 270 LKCGLVPNDVIFTTLIDGLCQANRITEAKNIFLDMPRYEVAPTVPVYNSLIHGAFRSGYA 329
Query: 405 VLTDAMLNSVLKALI-------SVGRMGECNKILKA--MEEGGFIASSNMKSKIAFRLSS 455
A +++ + S+ G C+ ++ M E G S + S
Sbjct: 330 QEALAFFQEIIRKGLRPDEFTCSIVVRGLCDALVTCTRMSEVGVEPHVVTYSSLIDGHSK 389
Query: 456 AGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGY 515
G+ + A M A G + + +LI GH GD+D AA QK +E++G
Sbjct: 390 NGEMEIAMAIYTEMVAKGVEPNVVTYTALIHGHAKNGDMD-AAFWLQKEMEEKGIYSNAI 448
Query: 516 AIDLLVNTYCSKNRAIDACKFV--HNCVREYDLKPW---HTTYEELIKNLLVQRGFKDAL 570
+ +LV+ C +NR DA +F+ ++ ++ + P TY LI L + + +A
Sbjct: 449 TVSVLVDGLCRENRVQDAVRFIMEYSGQKKSEKNPSIANSVTYMTLIYGLYIDGQYNEAC 508
Query: 571 SLLCLMKDHGFPP 583
M+D G P
Sbjct: 509 HFFSCMRDSGMVP 521
>gi|255660844|gb|ACU25591.1| pentatricopeptide repeat-containing protein [Rhaphithamnus
venustus]
Length = 418
Score = 59.7 bits (143), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 65/292 (22%), Positives = 115/292 (39%), Gaps = 5/292 (1%)
Query: 266 SNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLD 325
+ L++ VV + G + A +F E G + D ++ + + I +
Sbjct: 32 AKSLIQIVVSRKGKDSASA-VFAAILETKGTQRSDIYVFSGLITAYLESGFIRDAIEFFR 90
Query: 326 EMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSK 385
R + + +TC KVL + K Y+ + C S+ L+ + K
Sbjct: 91 LTREHKFWVPFDTCRKVLEHLMKLKYFKLVWGFYKEILECGYPASLYFFNILMHRFC--K 148
Query: 386 QLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNM 445
+ +MRL V + G + N+++ I +G + E ++ AM G
Sbjct: 149 EGEMRLAQSVFDAITKWGLRPSVVSFNTLMSGYIRLGDLDEGFRLKSAMHASGVQPDVYT 208
Query: 446 KSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMV 505
S + L K DEANE + M +G + +LI GHC G +D A + +++++
Sbjct: 209 YSVLINGLCKESKMDEANELFNEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQLL 268
Query: 506 EKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELI 557
+G S + L+ C K A + + +LKP TY LI
Sbjct: 269 S-QGFSPDLITYNTLIFGLCKKGDLKQARDLIDEMSMK-ELKPDKITYTTLI 318
>gi|60390261|sp|Q76C99.1|RF1_ORYSI RecName: Full=Protein Rf1, mitochondrial; AltName: Full=Fertility
restorer; AltName: Full=Protein PPR; AltName:
Full=Restorer for CMS; Flags: Precursor
gi|33859440|dbj|BAC77665.2| PPR protein [Oryza sativa Indica Group]
gi|33859442|dbj|BAC77666.2| Rf1 [Oryza sativa Indica Group]
gi|41152689|dbj|BAD08214.1| fertility restorer [Oryza sativa Indica Group]
gi|46091159|dbj|BAD13708.1| PPR protein [Oryza sativa Indica Group]
gi|47550657|dbj|BAD20283.1| restorer for CMS [Oryza sativa Indica Group]
Length = 791
Score = 59.7 bits (143), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 77/376 (20%), Positives = 150/376 (39%), Gaps = 39/376 (10%)
Query: 300 DESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLY 359
D +YN++ + L + +D+ +VL+ M G + T +L + KEA+
Sbjct: 230 DVVTYNSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGFL 289
Query: 360 EFAMACKNKPSVNCCTFLL------------RKIVVSK-----QLDMRLFSKVVRVFREN 402
+ + +P V + L+ RKI S + ++ + +++ +
Sbjct: 290 KKMRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKRGLKPEITTYGTLLQGYATK 349
Query: 403 GNV-----LTDAMLNS-------VLKALISV----GRMGECNKILKAMEEGGFIASSNMK 446
G + L D M+ + V LI G++ + + M + G ++
Sbjct: 350 GALVEMHGLLDLMVRNGIHPDHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPNAVTY 409
Query: 447 SKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVE 506
+ L +G+ ++A + + M G G+ ++ SLI G C ++A + +M++
Sbjct: 410 GAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLD 469
Query: 507 KEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGF 566
+ G + +++++C + R I++ K VR +KP TY LI +
Sbjct: 470 R-GICLNTIFFNSIIDSHCKEGRVIESEKLFELMVR-IGVKPNVITYNTLINGYCLAGKM 527
Query: 567 KDALSLLCLMKDHGFPPFV---DPFIKYVSKSGTSDDAIAFLKGMTSKRF-PSMSVVLCL 622
+A+ LL M G P I K +DA+ K M S P + +
Sbjct: 528 DEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDALVLFKEMESSGVSPDIITYNII 587
Query: 623 FAAFFQARRHSEAQDL 638
FQ RR + A++L
Sbjct: 588 LQGLFQTRRTAAAKEL 603
Score = 48.1 bits (113), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 79/350 (22%), Positives = 134/350 (38%), Gaps = 16/350 (4%)
Query: 242 CKVVRSDI----WGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFV 297
C+ R D+ G+ +++ R + F+ L DK + I R E G +
Sbjct: 98 CRAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMD--IVLRRMTELGCI 155
Query: 298 KHDESSYNAMASVLGREDCIDRFWKVLDEM---RSKGYEMEMETCVKVLGRFSERNMVKE 354
+ SYN + L E+ ++L M R G ++ + V+ F + +
Sbjct: 156 P-NVFSYNILLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYTTVINGFFKEGDSDK 214
Query: 355 AVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAML-NS 413
A Y + P V ++ + ++ +D + +V+ +NG V+ D M NS
Sbjct: 215 AYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAM--EVLNTMVKNG-VMPDCMTYNS 271
Query: 414 VLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASG 473
+L S G+ E LK M G S + L G+ EA + D M G
Sbjct: 272 ILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKRG 331
Query: 474 SDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDA 533
+ +L++G+ G L + MV + G Y +L+ Y +K +D
Sbjct: 332 LKPEITTYGTLLQGYATKGALVEMHGLLDLMV-RNGIHPDHYVFSILICAY-AKQGKVDQ 389
Query: 534 CKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPP 583
V + +R+ L P TY +I L +DA+ M D G P
Sbjct: 390 AMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSP 439
Score = 47.0 bits (110), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 78/397 (19%), Positives = 151/397 (38%), Gaps = 42/397 (10%)
Query: 280 EPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETC 339
+PK+A+ F + G V+ D +Y+ + L + K+ D M +G + E+ T
Sbjct: 281 QPKEAIGFLKKMRSDG-VEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKRGLKPEITTY 339
Query: 340 VKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLD--MRLFSK--- 394
+L ++ + + E L + + P + L+ ++D M +FSK
Sbjct: 340 GTLLQGYATKGALVEMHGLLDLMVRNGIHPDHYVFSILICAYAKQGKVDQAMLVFSKMRQ 399
Query: 395 ------------VVRVFRENGNVLTDAML-----------------NSVLKALISVGRMG 425
V+ + ++G V DAML NS++ L + +
Sbjct: 400 QGLNPNAVTYGAVIGILCKSGRV-EDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWE 458
Query: 426 ECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLI 485
+++ M + G ++ + I G+ E+ + + M G + +LI
Sbjct: 459 RAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFELMVRIGVKPNVITYNTLI 518
Query: 486 KGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYD 545
G+C+AG +D+A MV G L+N YC +R DA +
Sbjct: 519 NGYCLAGKMDEAMKLLSGMVSV-GLKPNTVTYSTLINGYCKISRMEDALVLFKE-MESSG 576
Query: 546 LKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPF---IKYVSKSGTSDDAI 602
+ P TY +++ L R A L + + G + + + + K+ +DDA+
Sbjct: 577 VSPDIITYNIILQGLFQTRRTAAAKELYVRITESGTQIELSTYNIILHGLCKNKLTDDAL 636
Query: 603 AFLKGMTSKRFPSMSVVL-CLFAAFFQARRHSEAQDL 638
+ + + + A + R+ EA+DL
Sbjct: 637 QMFQNLCLMDLKLEARTFNIMIDALLKVGRNDEAKDL 673
>gi|125541207|gb|EAY87602.1| hypothetical protein OsI_09013 [Oryza sativa Indica Group]
Length = 555
Score = 59.7 bits (143), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 95/460 (20%), Positives = 179/460 (38%), Gaps = 57/460 (12%)
Query: 224 IFATGSIDNSIEKVASRICKVVRSDIWG--DDVERQLRDLNVTFSNDLVKFVVDKLGDEP 281
+ T D ++ RI V G + E L L + LV V+ +L +
Sbjct: 67 VLPTNLQDERFAALSDRIYDAVIETAAGSSEGTEAALDALGAELTTPLVADVLHRLRYDE 126
Query: 282 KKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDR----FWKVLDEM-RSKGYEMEM 336
K A FF WA G +H+ ++YN + +L R VLD M R + + +
Sbjct: 127 KLAFRFFVWASHQGGYEHEAATYNDVIDILSGTRYKARQFGVLCDVLDHMKRRRTRSVPV 186
Query: 337 ETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVV 396
+ + +L ++E+++ LRK+ +++ MR +
Sbjct: 187 DDLLGILRAYTEKHLTH------------------------LRKLAKKRRVRMRTPPE-- 220
Query: 397 RVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSA 456
TDA LN +L A G + E + ++ + ++ S + F A
Sbjct: 221 ----------TDA-LNVLLDAFCKSGMVREAEAVFSRVKR-KLLGNAETYSILFFGWCRA 268
Query: 457 GKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGT--SHAG 514
A + ++ M + + + I C AG + +A D F+ M + T S
Sbjct: 269 RDPKRAMKVLEEMIQMKHTPENFTYNAAIDSFCSAGLVSEARDLFEFMRTEGSTISSPTA 328
Query: 515 YAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLC 574
+++ +K ++ C + + +R+ P +TY++LI+ +L+ A +L
Sbjct: 329 KTYSIMIAAL-AKAGQMEECFELISEMRKCGCMPDVSTYKDLIEGMLLVDKLDAAYCVLD 387
Query: 575 LMKDHGFPPFV---DPFIKYVSKSGTSDDAIAFLKGMTSKRF-PSMSVVLCLFAAFFQAR 630
M GFPP + + F+K + +DDA+ + M PS+ L FF+ R
Sbjct: 388 EMAKAGFPPDIVTYNCFLKVLCGLQKADDALELCERMIEAHCEPSVHTYNMLMVMFFEMR 447
Query: 631 RHSEAQDLLSK-----CPRYVRNHADVLNLLYSKKSGGDS 665
A ++ + C R V + +++ L+ D+
Sbjct: 448 EPDRAINIWIEMDKRGCHRAVDTYETMIDGLFDSGRTEDA 487
>gi|334183972|ref|NP_177860.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|193806398|sp|Q9FVX2.2|PP129_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g77360, mitochondrial; Flags: Precursor
gi|332197848|gb|AEE35969.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 517
Score = 59.7 bits (143), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 104/494 (21%), Positives = 182/494 (36%), Gaps = 82/494 (16%)
Query: 104 VSDIFYKFSDVNDISKQLEL------SGVVFTHEMVLKVLKNLESSPDEARRFFNWVLEK 157
V+D+ S V S QL L SG+ + E+V VL ++ RFF W ++
Sbjct: 68 VADVAKNISKVLMSSPQLVLDSALDQSGLRVSQEVVEDVLNRFRNAGLLTYRFFQWSEKQ 127
Query: 158 ESERLSSKTYNLMLRIVGVHGLVQEFWGLVDVMKKKG-------------YGVASHVRNK 204
S + Y++M+ + W L++ M+KK Y A V
Sbjct: 128 RHYEHSVRAYHMMIESTAKIRQYKLMWDLINAMRKKKMLNVETFCIVMRKYARAQKVDEA 187
Query: 205 MT--EKFEKEGLESDLEKLKGIFATGSIDNSIEKVASRICKVVRSDIWGDDVERQLRDLN 262
+ EK L +L G+ + ++ K +V +RD
Sbjct: 188 IYAFNVMEKYDLPPNLVAFNGLLSALCKSKNVRK--------------AQEVFENMRD-R 232
Query: 263 VTFSNDLVKFVVDKLGDEPK--KALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRF 320
T + +++ G EP KA FR ++G D +Y+ M +L + +D
Sbjct: 233 FTPDSKTYSILLEGWGKEPNLPKAREVFREMIDAG-CHPDIVTYSIMVDILCKAGRVDEA 291
Query: 321 WKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRK 380
++ M + ++ + N ++EAVD +
Sbjct: 292 LGIVRSMDPSICKPTTFIYSVLVHTYGTENRLEEAVDTF--------------------- 330
Query: 381 IVVSKQLDMRLFSKVVRVFRENGNVLTD-AMLNSVLKALISVGRMGECNKILKAMEEGGF 439
L+M E + D A+ NS++ A RM ++LK M+ G
Sbjct: 331 ------LEM-----------ERSGMKADVAVFNSLIGAFCKANRMKNVYRVLKEMKSKGV 373
Query: 440 IASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAAD 499
+S + I L G+KDEA + M D + +IK C +++ AD
Sbjct: 374 TPNSKSCNIILRHLIERGEKDEAFDVFRKMIKVCEPDADT-YTMVIKMFCEKKEME-TAD 431
Query: 500 CFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKN 559
K + K+G + + +L+N C + AC + + E ++P T+ L +
Sbjct: 432 KVWKYMRKKGVFPSMHTFSVLINGLCEERTTQKACVLLEEMI-EMGIRPSGVTFGRL-RQ 489
Query: 560 LLVQRGFKDALSLL 573
LL++ +D L L
Sbjct: 490 LLIKEEREDVLKFL 503
>gi|356541430|ref|XP_003539180.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74900,
mitochondrial-like [Glycine max]
Length = 492
Score = 59.7 bits (143), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 89/395 (22%), Positives = 156/395 (39%), Gaps = 46/395 (11%)
Query: 263 VTFSNDLVKFVVDKLGDEPKKALIFFRWAEES-GFVKHDESSYNAMASVLGREDCIDRFW 321
+ ++ +LV + +L + KAL+FF+ + H SS++ + R + W
Sbjct: 62 IHWTPELVNKTLKRLWNHGPKALLFFKHLDRHLPSYTHSPSSFDHAVDIAARMRDFNSAW 121
Query: 322 KVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKI 381
++ MRS + + K L +ER A KP TFL
Sbjct: 122 ALVGRMRS----LRLGPSPKTLAILAER-------------YASIGKPHRAVRTFLSMHE 164
Query: 382 VVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKA----------LISVG-----RMGE 426
Q D+ F+ ++ + ++ V T L LK+ +++ G R
Sbjct: 165 HGLHQ-DLHSFNTLLDILCKSNRVETAHDLLRTLKSRFRPDTVSYNILANGYCLKKRTPM 223
Query: 427 CNKILKAMEEGGF---IASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVS 483
++LK M + G + + N K FR + + EA EF M+ ++ + +
Sbjct: 224 ALRVLKEMVQRGIEPTMVTYNTMLKGYFR---SNQIKEAWEFYLEMKKRKCEIDVVSYTT 280
Query: 484 LIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVRE 543
+I G AG++ KA F +MV KEG + + L+ +C K+ +A VRE
Sbjct: 281 VIHGFGEAGEVKKAKRVFDEMV-KEGVAPNVATYNALIQVFCKKDSVQNAVAVFEEMVRE 339
Query: 544 YDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPF---IKYVSKSGTSDD 600
P T+ +I+ L + AL + M +HG V + I+Y +G +
Sbjct: 340 GVCSPNVVTFNVVIRGLCHVGDMERALGFMERMGEHGLRASVQTYNVVIRYFCDAGEIEK 399
Query: 601 AIAFLKGMTSKR-FPSMSVVLCLFAAFFQARRHSE 634
+ M P++ L +A F R+ SE
Sbjct: 400 GLEVFGKMGDGLCLPNLDTYNVLISAMF-VRKKSE 433
Score = 44.7 bits (104), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 88/394 (22%), Positives = 151/394 (38%), Gaps = 46/394 (11%)
Query: 99 SDFTVVSDIFYKFSDVNDISKQLELSGVVFTHEMVLKVLKNLESSPDEARRFFNWV-LEK 157
SD T+ + SD +S+ L + +T E+V K LK L + +A FF +
Sbjct: 37 SDATIAKLVLE--SDPRTLSEALTKPRIHWTPELVNKTLKRLWNHGPKALLFFKHLDRHL 94
Query: 158 ESERLSSKTYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRNKMTEKF-------- 209
S S +++ + I W LV M+ G + + E++
Sbjct: 95 PSYTHSPSSFDHAVDIAARMRDFNSAWALVGRMRSLRLGPSPKTLAILAERYASIGKPHR 154
Query: 210 --------EKEGLESDLEKLKGIFATGSIDNSIEKVASRICKVVRSDIWGDDVERQLRDL 261
+ GL DL +S + +CK R + D LR L
Sbjct: 155 AVRTFLSMHEHGLHQDL-------------HSFNTLLDILCKSNRVETAHD----LLRTL 197
Query: 262 NVTFSNDLVKFVVDKLGDEPKK----ALIFFRWAEESGFVKHDESSYNAMASVLGREDCI 317
F D V + + G KK AL + + G ++ +YN M R + I
Sbjct: 198 KSRFRPDTVSYNILANGYCLKKRTPMALRVLKEMVQRG-IEPTMVTYNTMLKGYFRSNQI 256
Query: 318 DRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFL 377
W+ EM+ + E+++ + V+ F E VK+A +++ + P+V L
Sbjct: 257 KEAWEFYLEMKKRKCEIDVVSYTTVIHGFGEAGEVKKAKRVFDEMVKEGVAPNVATYNAL 316
Query: 378 LRKIVV--SKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAME 435
++ S Q + +F ++VR + NV+T N V++ L VG M ++ M
Sbjct: 317 IQVFCKKDSVQNAVAVFEEMVREGVCSPNVVT---FNVVIRGLCHVGDMERALGFMERMG 373
Query: 436 EGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHM 469
E G AS + + AG+ ++ E M
Sbjct: 374 EHGLRASVQTYNVVIRYFCDAGEIEKGLEVFGKM 407
>gi|224149779|ref|XP_002336862.1| predicted protein [Populus trichocarpa]
gi|222837029|gb|EEE75408.1| predicted protein [Populus trichocarpa]
Length = 370
Score = 59.7 bits (143), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 54/270 (20%), Positives = 110/270 (40%), Gaps = 15/270 (5%)
Query: 264 TFSNDLVKFVVDKLGD-----EPKKALIFFRWAE-ESGFVKHDESSYNAMASVLGREDCI 317
+ S +++ V+++ G + L FF WA + GF K E ++N M G+
Sbjct: 105 SISPSIIRHVIEQSGGVRHGIPVPQVLAFFNWASYQDGFDKSPE-AFNEMVDFAGKVRMF 163
Query: 318 DRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFL 377
D W V+D M+++ E+ +ET ++ R+ + EA+ + KP + L
Sbjct: 164 DLAWHVIDLMKARDVEITVETFSILMRRYVRAGLAAEAIHAFNRMEDYNCKPDKIAFSIL 223
Query: 378 LRKIVVSKQLD--MRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAME 435
+ + ++ F + F + V T+ +++ G + E ++ M+
Sbjct: 224 ISILCRKRRASEAQEFFDSLKDKFEPDVIVYTN-----LVRGWCRAGNISEAERVFGEMK 278
Query: 436 EGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLD 495
G + S + L G+ A++ M +G + SL++ H AG +
Sbjct: 279 VAGIKPNVYTYSIVIDSLCRCGQITRAHDVFAEMLDAGCQPNSITYNSLMRIHVKAGRTE 338
Query: 496 KAADCFQKMVEKEGTSHAGYAIDLLVNTYC 525
K + +M ++ G + L+ T+C
Sbjct: 339 KVLQVYNQM-KRLGCEPDTVTYNFLIETHC 367
>gi|449437410|ref|XP_004136485.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20300,
mitochondrial-like [Cucumis sativus]
gi|449519964|ref|XP_004167004.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20300,
mitochondrial-like [Cucumis sativus]
Length = 534
Score = 59.7 bits (143), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 67/342 (19%), Positives = 134/342 (39%), Gaps = 44/342 (12%)
Query: 264 TFSNDLVKFVVDKLGDEPK-----KALIFFRWAEESGFVKHDESSYNAMASVLGREDCID 318
+ S +V++V++K G AL FF WA +H YN M + G+
Sbjct: 106 SVSPAVVRYVIEKSGAVRHGIPFLPALAFFNWATAGEGFEHSPQPYNEMIDLAGKVKQFG 165
Query: 319 RFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAV-------------DLYEF---- 361
W ++D M+++ E+ + T ++ R+ + EAV D+ F
Sbjct: 166 LAWYLIDLMKARNVEITVVTFSMLVRRYVRAGLAAEAVHAFNRMEDYGCNADIIAFSNVI 225
Query: 362 AMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISV 421
++ CK + +V +F F + F + V T S++
Sbjct: 226 SILCKKRRAVEAQSF---------------FDNLKHKFEPDVIVYT-----SLVHGWCRA 265
Query: 422 GRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMW 481
G + E + + M+ G + S + L +G+ A++ M +G + +
Sbjct: 266 GDISEAESVFREMKMAGISPNVYTYSIVIDALCRSGQITRAHDVFAEMLDAGCNPNSVTF 325
Query: 482 VSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCV 541
+LI+ H AG +K + +M ++ + + L+ T+C + +A K V N +
Sbjct: 326 NNLIRVHLRAGRTEKVLQVYNQM-KRLRCAADLITYNFLIETHCKDDNLGEAIK-VLNSM 383
Query: 542 REYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPP 583
+ D P +++ + + + + A + MK+ G P
Sbjct: 384 AKNDCTPNASSFNPIFRCIAKSQDVNGAHRMFARMKEVGCKP 425
>gi|3107905|dbj|BAA25906.1| leaf protein [Ipomoea nil]
Length = 665
Score = 59.7 bits (143), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 65/287 (22%), Positives = 115/287 (40%), Gaps = 4/287 (1%)
Query: 297 VKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAV 356
+K D+ +YN + ++ I++ W V+ M G + ++ T + ++ A
Sbjct: 205 IKPDDRTYNILVQAWCNKNNIEKAWGVVHRMVGAGLKPDVVTYNTIARAYARGKETSRAA 264
Query: 357 DLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLK 416
+L K P+V C ++ SK+ +M K + + G + NS+LK
Sbjct: 265 ELISQMQNNKVAPNVRTCGIVVDG--YSKEGNMADALKFIYKMQGFGVHPNLFIFNSLLK 322
Query: 417 ALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDV 476
+ + ++ L M+E G S I SSAG ++ E M SG +
Sbjct: 323 GFLDITDTKGVDETLTLMQEFGVKPDVVTYSTIMNAWSSAGLMEKCEEMFQDMIKSGIEP 382
Query: 477 GDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKF 536
+ + L KG+ AG+ KA + M G +++ +CS + DA +
Sbjct: 383 DNHAFSILAKGYVRAGEPKKAEALLEAMA-THGAHPNVVMFTTIISGWCSAAKMEDALRV 441
Query: 537 VHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPP 583
R D++P T+E LI A LL +M++ G P
Sbjct: 442 YDRMCR-MDVQPNLNTFETLIWGYGEANEPWKAEELLQIMEEMGVLP 487
Score = 52.4 bits (124), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 51/217 (23%), Positives = 85/217 (39%), Gaps = 4/217 (1%)
Query: 395 VVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLS 454
+ + E G+ T +VL AL R +LK +E+ G S + +
Sbjct: 90 ITKGLTEEGHRPTLVTYTTVLAALTLQKRFKSIPLLLKKVEQNGLRPDSIFFNPMINAFC 149
Query: 455 SAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAG 514
+G EA + M G + +LIKG + G ++++ + M +E
Sbjct: 150 ESGNVKEAMKIFRKMREKGCKPTASTFNALIKGFGIIGKPEESSKLLEIMSREENIKPDD 209
Query: 515 YAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLC 574
++LV +C+KN A VH V LKP TY + + + A L+
Sbjct: 210 RTYNILVQAWCNKNNIEKAWGVVHRMVGA-GLKPDVVTYNTIARAYARGKETSRAAELIS 268
Query: 575 LMKDHGFPPFVDP---FIKYVSKSGTSDDAIAFLKGM 608
M+++ P V + SK G DA+ F+ M
Sbjct: 269 QMQNNKVAPNVRTCGIVVDGYSKEGNMADALKFIYKM 305
>gi|255557937|ref|XP_002519997.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223540761|gb|EEF42321.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 1429
Score = 59.7 bits (143), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 62/277 (22%), Positives = 121/277 (43%), Gaps = 10/277 (3%)
Query: 369 PSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECN 428
P+V+ LL+ ++V +L+ L+ V + ++ G ++ + + +L A V + E
Sbjct: 803 PTVDSINGLLQALIVDGRLE-ELYV-VTQEIQDMGFQISKSSILLILDAFARVSNIAEAK 860
Query: 429 KILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFM-DHMEASGSDVGDKMWVSLIKG 487
KI + M+ G+ + ++ +I L GK+ E M ME +G +W S+++
Sbjct: 861 KIYQGMKAAGYFPTMHL-YRIMIGLLCKGKRVRDVEAMVTEMEEAGFRPDLSIWNSMLRL 919
Query: 488 HCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLK 547
+ D K +Q+ ++++G + L+ YC +R + C +H +R L+
Sbjct: 920 YTGIDDFRKTVQIYQR-IKEDGLQPDEDTYNTLIVMYCRDHRPEEGCSLMHE-MRRIGLE 977
Query: 548 PWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFP---PFVDPFIKYVSKSGTSDDAIAF 604
P TY+ LI Q+ DA L + G F +K SG A
Sbjct: 978 PKLDTYKSLIAAFGKQQLVVDAEELFEELLSKGSKLDRSFYHIMMKIYRNSGNHSKAEKL 1037
Query: 605 LKGMTSKRF-PSMSVVLCLFAAFFQARRHSEAQDLLS 640
L M P+++ + L ++ + + EA+ +L+
Sbjct: 1038 LSMMKDAGVEPTIATMHLLMVSYGSSGQPQEAEKVLT 1074
Score = 42.7 bits (99), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 67/377 (17%), Positives = 161/377 (42%), Gaps = 60/377 (15%)
Query: 145 DEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRNK 204
++AR FN ++ ++ + + N +L+ + V G ++E + + ++ G+ ++
Sbjct: 787 EQARAVFNTMM-RDGPSPTVDSINGLLQALIVDGRLEELYVVTQEIQDMGFQISKSSILL 845
Query: 205 MTEKFEKEGLESDLEKL-KGIFATGSIDNS--IEKVASRICKVVRSDIWGDDVERQLRDL 261
+ + F + ++ +K+ +G+ A G + +CK R DVE + ++
Sbjct: 846 ILDAFARVSNIAEAKKIYQGMKAAGYFPTMHLYRIMIGLLCKGKRVR----DVEAMVTEM 901
Query: 262 -------NVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGRE 314
+++ N +++ D+ +K + ++ +E G ++ DE +YN + + R+
Sbjct: 902 EEAGFRPDLSIWNSMLRLYTGI--DDFRKTVQIYQRIKEDG-LQPDEDTYNTLIVMYCRD 958
Query: 315 DCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCC 374
+ ++ EMR G E +++T ++ F ++ +V +A +L+E ++ +K
Sbjct: 959 HRPEEGCSLMHEMRRIGLEPKLDTYKSLIAAFGKQQLVVDAEELFEELLSKGSK------ 1012
Query: 375 TFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAM 434
LD + +++++R +GN + K+L M
Sbjct: 1013 ------------LDRSFYHIMMKIYRNSGN-------------------HSKAEKLLSMM 1041
Query: 435 EEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDL 494
++ G + + S+G+ EA + + +++ G + + S+I + D
Sbjct: 1042 KDAGVEPTIATMHLLMVSYGSSGQPQEAEKVLTNLKEMGLSLSTLPYSSVIDAYLKNKDY 1101
Query: 495 DKAADCFQKMVE--KEG 509
QK+VE KEG
Sbjct: 1102 SVG---IQKLVEMKKEG 1115
>gi|297816088|ref|XP_002875927.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297321765|gb|EFH52186.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 657
Score = 59.7 bits (143), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 80/398 (20%), Positives = 149/398 (37%), Gaps = 53/398 (13%)
Query: 284 ALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVL 343
AL FF+ S KH ++ M L + +D +L +M+ +G+ + + V+
Sbjct: 58 ALHFFKSIANSNLFKHTPLTFEVMIRKLAMDGQVDSVQYLLQQMKLQGFHCSEDLFISVI 117
Query: 344 GRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENG 403
+ + + + AV+++ PSV +L ++ ++ M V R + +G
Sbjct: 118 SVYRQVGLAERAVEMFYRIKEFGCDPSVKIYNHVLDTLLGENRIQM--IYMVYRDMKRDG 175
Query: 404 ---NVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKD 460
NV T N +LKAL ++ K+L M G ++ + + + G
Sbjct: 176 FEPNVFT---YNVLLKALCKNNKVDGAKKLLVEMSNKGCCPNAVSYTTVISSMCEVGMVK 232
Query: 461 EANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLL 520
E + + E S ++ +LI G C D + +MVEK G S + L
Sbjct: 233 EGRQLAERFEPVVS-----VYNALINGLCKERDYKGGVELMSEMVEK-GISPNVISYSTL 286
Query: 521 VNTY--------------------CSKN---------------RAIDACKFVHNCVREYD 545
+N C N DA + +R +
Sbjct: 287 INELSNSGQIELAFSLLAQMLKRGCHPNIHTLSSLVKGCFVRGTTFDALDMWNQMIRGFG 346
Query: 546 LKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPF---IKYVSKSGTSDDAI 602
L+P Y L++ A+S+ M++ G P + + I +K G+ + A+
Sbjct: 347 LQPNVVAYNTLVQGFCSHGNIDKAVSVFLHMEEIGCSPNIRTYGSLINGFTKRGSLEGAV 406
Query: 603 AFL-KGMTSKRFPSMSVVLCLFAAFFQARRHSEAQDLL 639
K +TS P++ V + A + + EA+ L+
Sbjct: 407 YIWNKMLTSGCCPNVVVYTSMVEALCRHSKFKEAESLI 444
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 109/514 (21%), Positives = 203/514 (39%), Gaps = 52/514 (10%)
Query: 133 VLKVLKNLESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLVDVMKK 192
VLK L+ ES A FF + + + T+ +M+R + + G V L+ MK
Sbjct: 45 VLKRLRQ-ESCVPLALHFFKSIANSNLFKHTPLTFEVMIRKLAMDGQVDSVQYLLQQMKL 103
Query: 193 KGYGVASHVRNKMTEKFEKEGLESDLEKLKGIFATGSIDNSIEKVASRICKVVRSDIWGD 252
+G+ + + + + + GL E+ +F
Sbjct: 104 QGFHCSEDLFISVISVYRQVGLA---ERAVEMFY-------------------------- 134
Query: 253 DVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIF--FRWAEESGFVKHDESSYNAMASV 310
++++ S + V+D L E + +I+ +R + GF + + +YN +
Sbjct: 135 ----RIKEFGCDPSVKIYNHVLDTLLGENRIQMIYMVYRDMKRDGF-EPNVFTYNVLLKA 189
Query: 311 LGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPS 370
L + + +D K+L EM +KG + V+ E MVKE L E + +P
Sbjct: 190 LCKNNKVDGAKKLLVEMSNKGCCPNAVSYTTVISSMCEVGMVKEGRQLAE-----RFEPV 244
Query: 371 VNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKI 430
V+ L+ + K+ D + +++ E G ++++ L + G++ +
Sbjct: 245 VSVYNALINGL--CKERDYKGGVELMSEMVEKGISPNVISYSTLINELSNSGQIELAFSL 302
Query: 431 LKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHM-EASGSDVGDKMWVSLIKGHC 489
L M + G + + S + G +A + + M G + +L++G C
Sbjct: 303 LAQMLKRGCHPNIHTLSSLVKGCFVRGTTFDALDMWNQMIRGFGLQPNVVAYNTLVQGFC 362
Query: 490 VAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPW 549
G++DKA F M E+ G S L+N + +K +++ ++ N + P
Sbjct: 363 SHGNIDKAVSVFLHM-EEIGCSPNIRTYGSLINGF-TKRGSLEGAVYIWNKMLTSGCCPN 420
Query: 550 HTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFV---DPFIKYVSKSGTSDDAIAFLK 606
Y +++ L FK+A SL+ +M P V + FIK + +G D A +
Sbjct: 421 VVVYTSMVEALCRHSKFKEAESLIEIMSKENCAPSVPTFNAFIKGLCDAGRLDWAEKVFR 480
Query: 607 GMTSK-RFPSMSVVLC-LFAAFFQARRHSEAQDL 638
M + R P V L +A R EA L
Sbjct: 481 QMEQQYRCPPNIVTYNELLDGLAKANRIEEAYGL 514
>gi|296081012|emb|CBI18516.3| unnamed protein product [Vitis vinifera]
Length = 967
Score = 59.7 bits (143), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 61/239 (25%), Positives = 98/239 (41%), Gaps = 10/239 (4%)
Query: 346 FSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRE---N 402
+ + M+ AV+ +E KPSV C +L +V K+ ++ V +FRE
Sbjct: 173 YLKEGMIDYAVETFELVGLVGFKPSVYTCNMILASMVKDKRTEL-----VWSLFREMSDK 227
Query: 403 GNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEA 462
G N ++ L G + + +LK MEE GF+ + + + G+ A
Sbjct: 228 GICPNVGTFNILINGLCVEGNLKKAGNLLKQMEENGFVPTIVTYNTLLNWYCKKGRYKAA 287
Query: 463 NEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVN 522
E +D+M G + + I C KA +KM KE S + L+N
Sbjct: 288 IELIDYMICKGIEADVCTYNVFIDNLCTNHRSAKAYLLLKKM-RKEMISPNEVTYNTLIN 346
Query: 523 TYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGF 581
+ + + I V N + ++DL P TY LI F++AL LL M+ G
Sbjct: 347 GFVKEGK-IGVAAQVFNEMSKFDLSPNCVTYNALIGGHCHVGDFEEALRLLDHMEAAGL 404
Score = 45.8 bits (107), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 112/555 (20%), Positives = 190/555 (34%), Gaps = 108/555 (19%)
Query: 92 PAMEQKESDFTVVSDIFYKFSDVNDISKQLELSGVVFTHEMVLKVLKNLESSPDEARRFF 151
P S F ++ ++ K ++ + EL G+V V L S + R
Sbjct: 157 PLCNSIPSVFDLLIRVYLKEGMIDYAVETFELVGLVGFKPSVYTCNMILASMVKDKRTEL 216
Query: 152 NWVLEKESERLSSK-------TYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRNK 204
W L +E +S K T+N+++ + V G +++ L+ M++ G+ N
Sbjct: 217 VWSLFRE---MSDKGICPNVGTFNILINGLCVEGNLKKAGNLLKQMEENGFVPTIVTYNT 273
Query: 205 MTEKFEKEGLESDLEKLKGIFATGSIDNSIEKVASRICKVVRSDIWGDDVERQLRDLNVT 264
+ + K+G +IE + ICK + +D+ +V
Sbjct: 274 LLNWYCKKG---------------RYKAAIELIDYMICKGIEADVCTYNV---------- 308
Query: 265 FSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVL 324
F ++L KA + + + + +E +YN + + +E I +V
Sbjct: 309 FIDNLCT------NHRSAKAYLLLKKMRKE-MISPNEVTYNTLINGFVKEGKIGVAAQVF 361
Query: 325 DEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVS 384
+EM T ++G +EA+ L + A LR ++
Sbjct: 362 NEMSKFDLSPNCVTYNALIGGHCHVGDFEEALRLLDHMEAAG-----------LR---LN 407
Query: 385 KQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSN 444
+ ++ KV V NG+ N ++ +L G++GE K L M G + +S
Sbjct: 408 EHGNVTEAMKVYAVMNCNGHGADHFTCNVLVSSLCRDGKLGEAEKFLCHMSRIGLVPNSI 467
Query: 445 MKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGH---------------- 488
I S G A F D M G + SL+KG
Sbjct: 468 TYDCIINGYGSIGDPLNAFSFFDDMIKCGQHPSFFTYGSLLKGLCKGGNLVEAKKFLNRL 527
Query: 489 -------------------CVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNR 529
C +G+L +A F KMV+ + Y L+ C K +
Sbjct: 528 HYIPGAVDSVMYNTLLAETCKSGNLHEAVALFDKMVQNNVLPDS-YTYSSLLTGLCRKGK 586
Query: 530 AIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPFI 589
A+ A + L P H Y L+ D LS G P F
Sbjct: 587 AVTAVCLFGTAMGRGTLFPNHVMYTCLV----------DGLS------KAGHPKAAFYFF 630
Query: 590 KYVSKSGTSDDAIAF 604
+ + K GT D +AF
Sbjct: 631 EEMMKKGTCPDTVAF 645
>gi|449534287|ref|XP_004174096.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g43820-like, partial [Cucumis sativus]
Length = 331
Score = 59.7 bits (143), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 56/219 (25%), Positives = 90/219 (41%), Gaps = 13/219 (5%)
Query: 254 VERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGR 313
+E L + +V S D+V V++ + + FF WA + + D SSYN + LGR
Sbjct: 105 IEHALANTDVILSQDVVSKVLNTGSLGSEAMVTFFYWAIKQPSIPKDASSYNIILKALGR 164
Query: 314 EDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAV----DLYEFAMACKNKP 369
D VL M +G E +E V+ + + V +A+ +L E + C +
Sbjct: 165 RGFFDSMMDVLYNMTREGVEATLEMVSIVVDSLVKGHQVSKALQFFRNLKEIGLKCDTET 224
Query: 370 SVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAML-NSVLKALISVGRMGECN 428
+ R+ V +K GN+ + M N V+ GR GE
Sbjct: 225 LNILLQCMCRRSHVGAANSFFNLTK--------GNIPFNVMTYNIVIGGWSRYGRHGEVE 276
Query: 429 KILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMD 467
++LKAME GF + + L A + D+A + D
Sbjct: 277 QMLKAMELDGFSPDCLTHTYLIECLGRANQIDDAVKIFD 315
>gi|115438490|ref|NP_001043552.1| Os01g0611900 [Oryza sativa Japonica Group]
gi|21104680|dbj|BAB93270.1| fertility restorer homologue-like [Oryza sativa Japonica Group]
gi|113533083|dbj|BAF05466.1| Os01g0611900 [Oryza sativa Japonica Group]
gi|125571150|gb|EAZ12665.1| hypothetical protein OsJ_02580 [Oryza sativa Japonica Group]
gi|215767882|dbj|BAH00111.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 800
Score = 59.7 bits (143), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 79/396 (19%), Positives = 151/396 (38%), Gaps = 39/396 (9%)
Query: 280 EPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETC 339
+ +AL+ R +++GFV D ++N++ VL + ++ + DE+ + G +M +
Sbjct: 227 DANRALLVLRKMQDAGFVPWD-FTFNSVVDVLVKGGRMEEALHIKDELLATGKKMSVVLA 285
Query: 340 VKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLR-------------------- 379
++ + + V++A+D++E + P+ T L+R
Sbjct: 286 TTLMHGYCLQREVRKALDIFEETLRDGLVPTDVTYTVLIRGCTEEGMPEKAYELCRQMRD 345
Query: 380 ----------KIVVSKQLDMRLFSKVVRVFRENGNV-LTDAML-NSVLKALISVGRMGEC 427
+V+ L+ +L+ V +F+E + + DA N ++ L ++ E
Sbjct: 346 HGLLPSTNEFNMVIKGLLNDKLWKDAVSLFKEMADSGIPDAFTYNILIHWLCQRRKIREA 405
Query: 428 NKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKG 487
+ + M E G + G DEA + M G + +L+KG
Sbjct: 406 LNLWEKMNETGVKPYIVTYHSLLLCYCVNGCMDEAVKLYTEMPGKGFTPNVVTYTTLMKG 465
Query: 488 HCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLK 547
H DKA +M ++ G S Y + L+N C R + + + E
Sbjct: 466 HINKAAFDKAYALLAEM-KQNGVSCNDYTYNTLINGLCVVGRVCEVGEMLKRFETE-GFV 523
Query: 548 PWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPFIKYVS---KSGTSDDAIAF 604
P TY +I + A ++ M G PP + + ++ K+ D A+
Sbjct: 524 PTAMTYNSIINGFIKAGMMGSAFAVYQQMCAKGIPPNIVTYTSFIDGYCKTSCCDLALKM 583
Query: 605 LKGMTSKRF-PSMSVVLCLFAAFFQARRHSEAQDLL 639
L + K P ++ L F Q S A +L
Sbjct: 584 LNDVRCKGLRPDIAAYNSLIFGFCQEGNMSHALQVL 619
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/197 (23%), Positives = 96/197 (48%), Gaps = 9/197 (4%)
Query: 391 LFSKVVRVFRE--NGNVLTDAMLNSVLKALISVGRMGECNK---ILKAMEEGGFIASSNM 445
++ VR+F E + D + SV A+ S+ ++ + N+ +L+ M++ GF+
Sbjct: 192 MYDDAVRLFDEMPASEIEPDQRVCSV--AIASLCKLRDANRALLVLRKMQDAGFVPWDFT 249
Query: 446 KSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMV 505
+ + L G+ +EA D + A+G + + +L+ G+C+ ++ KA D F++ +
Sbjct: 250 FNSVVDVLVKGGRMEEALHIKDELLATGKKMSVVLATTLMHGYCLQREVRKALDIFEETL 309
Query: 506 EKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRG 565
++G +L+ C++ + + +R++ L P + +IK LL +
Sbjct: 310 -RDGLVPTDVTYTVLIRG-CTEEGMPEKAYELCRQMRDHGLLPSTNEFNMVIKGLLNDKL 367
Query: 566 FKDALSLLCLMKDHGFP 582
+KDA+SL M D G P
Sbjct: 368 WKDAVSLFKEMADSGIP 384
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 75/340 (22%), Positives = 128/340 (37%), Gaps = 43/340 (12%)
Query: 256 RQLRDLNVTFSNDLVKFVVDKLGDEP--KKALIFFRWAEESGFVKHDESSYNAMASVLGR 313
RQ+RD + S + V+ L ++ K A+ F+ +SG D +YN + L +
Sbjct: 341 RQMRDHGLLPSTNEFNMVIKGLLNDKLWKDAVSLFKEMADSGI--PDAFTYNILIHWLCQ 398
Query: 314 EDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNC 373
I + ++M G + + T +L + + EAV LY P+V
Sbjct: 399 RRKIREALNLWEKMNETGVKPYIVTYHSLLLCYCVNGCMDEAVKLYTEMPGKGFTPNVVT 458
Query: 374 CTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKA 433
T L++ + D + ++ + + ++NG D N+++ L VGR+ E ++LK
Sbjct: 459 YTTLMKGHINKAAFD-KAYALLAEM-KQNGVSCNDYTYNTLINGLCVVGRVCEVGEMLKR 516
Query: 434 MEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGD 493
E GF+ ++ + I AG A M A G + S I G+C
Sbjct: 517 FETEGFVPTAMTYNSIINGFIKAGMMGSAFAVYQQMCAKGIPPNIVTYTSFIDGYC---- 572
Query: 494 LDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTY 553
TS A+ +L N VR L+P Y
Sbjct: 573 ---------------KTSCCDLALKML------------------NDVRCKGLRPDIAAY 599
Query: 554 EELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPFIKYVS 593
LI + AL +L LM G P + + +++
Sbjct: 600 NSLIFGFCQEGNMSHALQVLVLMLKDGLLPNISVYNSFIT 639
>gi|297842741|ref|XP_002889252.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297335093|gb|EFH65511.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 780
Score = 59.7 bits (143), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 64/299 (21%), Positives = 125/299 (41%), Gaps = 8/299 (2%)
Query: 287 FFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRF 346
FF WA ++ ES + + +L ++ D +W+ L+E++S G ++ ++ +
Sbjct: 79 FFIWASRRERLRSGES-FGLVIDMLSEDNGCDLYWQTLEELKSGGVSVDSYCFCVLISAY 137
Query: 347 SERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFREN--GN 404
++ + ++AV+ + +P V +LR ++ M F+ + + N N
Sbjct: 138 AKMGLAEKAVESFGRMKEFDCRPDVFTYNVILRIMMREDVFFMLAFAVYNEMLKCNCSPN 197
Query: 405 VLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANE 464
+ T +L + L GR + K+ M G + + + L G ++A +
Sbjct: 198 LYTFGIL---MDGLYKKGRTSDAQKMFDDMTGRGISPNRVTYTILISGLCQRGSPEDARK 254
Query: 465 FMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTY 524
M+ASG+ +L+ G C G + +A + ++ EK+G L++
Sbjct: 255 LFYEMKASGNYPDSVAHNALLDGFCKLGRMVEAFELL-RLFEKDGFVLGLRGYSSLIDGL 313
Query: 525 CSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPP 583
R A + N ++ ++KP Y LI+ L +DAL LL M G P
Sbjct: 314 FRARRYTQAFELYANMLKR-NIKPDIILYTILIQGLSKAGKIEDALKLLRSMPSKGITP 371
Score = 41.6 bits (96), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 55/249 (22%), Positives = 93/249 (37%), Gaps = 19/249 (7%)
Query: 344 GRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENG 403
G F R +A +LY + KP + T L++ + + +++ L K++R G
Sbjct: 312 GLFRARRYT-QAFELYANMLKRNIKPDIILYTILIQGLSKAGKIEDAL--KLLRSMPSKG 368
Query: 404 NVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEAN 463
N+V+KAL G + E + M E + + + + G +A
Sbjct: 369 ITPDTYCYNAVIKALCGRGLLEEGRSLQLEMSETESFPDACTHTILICSMCRNGLVRKAE 428
Query: 464 EFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNT 523
E +E SG + +LI G C +G+L +A KM G L +
Sbjct: 429 EIFLEIEKSGCSPSVATFNALIDGLCKSGELKEARLLLHKM-------EVGRPASLFLRL 481
Query: 524 YCSKNRAIDACKFVHNCVREY---------DLKPWHTTYEELIKNLLVQRGFKDALSLLC 574
S NR+ D + ++ Y P +Y LI + AL LL
Sbjct: 482 AHSGNRSFDTMVQSGSILKAYKNLAHFADTGNSPDIVSYNVLINGFCREGDIDGALKLLN 541
Query: 575 LMKDHGFPP 583
+++ G P
Sbjct: 542 VLQLKGLSP 550
>gi|224138176|ref|XP_002326537.1| predicted protein [Populus trichocarpa]
gi|222833859|gb|EEE72336.1| predicted protein [Populus trichocarpa]
Length = 826
Score = 59.7 bits (143), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 77/331 (23%), Positives = 134/331 (40%), Gaps = 14/331 (4%)
Query: 288 FRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFS 347
RW E+G + D ++YN + S R+ + ++L+ +G + ++ +
Sbjct: 333 LRWITENG-CEPDITTYNTLISGSCRDGKVHEAEELLEHAIKRGLSPNKLSYTPLIHVYC 391
Query: 348 ERNMVKEAVDLYEFAMACKNKP-SVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVL 406
++ A DL+ M K P + L+ +V + ++D+ L + V R VL
Sbjct: 392 KQGKCLRAFDLF-IGMTEKGHPLDLVAYGALVHGLVAAGEVDVALTVRDKMVER---GVL 447
Query: 407 TDA-MLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEF 465
DA + N ++ L GR+ +L M + + + + GK DEA +
Sbjct: 448 PDANVYNVLMNGLCKKGRLSAAKLLLVEMLHQNLSLDAFVSATLVDGFIRHGKLDEAKKL 507
Query: 466 MDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGT-SHAGYAIDLLVNTY 524
+ A G D G + ++IKG+C G ++ A C Q+M K+G S + +++ Y
Sbjct: 508 FELTIAKGMDPGVVGYNAMIKGYCKFGMMNDALTCVQRM--KDGDHSPDEFTYSTIIDGY 565
Query: 525 CSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPF 584
+N +A K V++ KP TY LI A M+ G P
Sbjct: 566 VKQNDLHNALKLFGQMVKQ-KCKPNVVTYTSLINGFCRTGDSSRAEKTFEEMRSSGLKPN 624
Query: 585 VDPF---IKYVSKSGTSDDAIAFLKGMTSKR 612
V + I K G A +F + M R
Sbjct: 625 VVTYTILIGCFCKEGKISKACSFFELMLLNR 655
Score = 50.1 bits (118), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 81/381 (21%), Positives = 135/381 (35%), Gaps = 32/381 (8%)
Query: 250 WGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKH--DESSYNAM 307
W +E + D S + FV D++ D P L F WA + D S +++
Sbjct: 48 WEKSLETRFSDCETPVSG-IAHFVFDRIRD-PGLGLKLFEWASKRSDFNDLLDGFSCSSL 105
Query: 308 ASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKN 367
+L R +L+ M+ K E V+G + + +V A++LY A N
Sbjct: 106 LKLLARCRVFVEVENLLETMKCKDLAPTREALSFVVGAYVDSGLVNRALELYHIAYDIHN 165
Query: 368 K-PSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGE 426
P V C LL ++ K++++ KV + + + +++ L ++ E
Sbjct: 166 YLPDVIACNALLNALIQQKKVEIA--RKVYEEMVKRDGCWDNYSVCIMVRGLCKERKVEE 223
Query: 427 CNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIK 486
K++ G I + + + G + AN ++ G + + +I
Sbjct: 224 GRKLINDRWGKGCIPNIVFYNTLVDGYWKRGDVERANGLFKELKMKGFLPTTETYGIMIN 283
Query: 487 GHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNC------ 540
G C + +M E+ +D+ V Y N +DA + H C
Sbjct: 284 GLCKKCNFKAVDGLLVEMKER--------GVDVNVQVY---NSIVDA-QIKHGCKIEVGK 331
Query: 541 ----VREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPP---FVDPFIKYVS 593
+ E +P TTY LI +A LL G P P I
Sbjct: 332 TLRWITENGCEPDITTYNTLISGSCRDGKVHEAEELLEHAIKRGLSPNKLSYTPLIHVYC 391
Query: 594 KSGTSDDAIAFLKGMTSKRFP 614
K G A GMT K P
Sbjct: 392 KQGKCLRAFDLFIGMTEKGHP 412
>gi|50878351|gb|AAT85126.1| hypothetical protein [Oryza sativa Japonica Group]
Length = 920
Score = 59.7 bits (143), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 54/257 (21%), Positives = 107/257 (41%), Gaps = 12/257 (4%)
Query: 303 SYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFA 362
+Y A+ + +E + + EM + G + C ++ F + V EA + +
Sbjct: 606 TYGALIAGWCKEGNLHEACNLYFEMVNNGMNPNVFICSALMSCFYKEGKVDEANLVLQKL 665
Query: 363 MACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVG 422
+ P + T + KI S VV + + M N ++ L G
Sbjct: 666 VNIDMIPGCSISTIEIDKI-----------SHVVDTIADGNPHSANVMWNVIIFGLCKSG 714
Query: 423 RMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWV 482
R+ + + +++ F+ + S + +++G DEA D M ++G +
Sbjct: 715 RIADAKSLFESLRNKRFLPDNFTYSSLIHGCAASGSIDEAFSLRDVMLSAGLTPNIITYN 774
Query: 483 SLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVR 542
SLI G C +G L +A + F K+ + +G S G + L++ YC + + +A K V
Sbjct: 775 SLIYGLCKSGKLSRAVNLFNKL-QSKGISPNGITYNTLIDEYCKEGKTTEAFKLKQKMVE 833
Query: 543 EYDLKPWHTTYEELIKN 559
E ++ +++I+N
Sbjct: 834 EGYMEEAIKLLDQMIEN 850
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 52/238 (21%), Positives = 102/238 (42%), Gaps = 5/238 (2%)
Query: 347 SERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVL 406
++ + A+++++ +PS+ C LL K+V S D + + V R G VL
Sbjct: 159 ADAGQLSSALNVFDGMGKVGCRPSLRSCNRLLNKLVQSG--DPGMAAMVYGQMRIAG-VL 215
Query: 407 TDAMLNSVL-KALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEF 465
D +++ KA GR+ + + ++ ME G + + G ++A
Sbjct: 216 PDEFTVAIMAKAYCRDGRVAQAVEFVEEMEGMGLEVNLVAYHAVMDCYCGMGWTEDARRI 275
Query: 466 MDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYC 525
++ ++ G + L+KG+C G +++A ++M E A +++N YC
Sbjct: 276 LESLQRKGLSPNVVTYTLLVKGYCKDGRMEEAERVVKEMKETGDIVVDEVAYGMMINGYC 335
Query: 526 SKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPP 583
+ R DA + V N +R+ + Y +I L ++ +L M+D G P
Sbjct: 336 QRGRMDDATR-VRNEMRDAGIHVNLFVYNTMINGLCKLGRMEEVQKVLQEMEDVGMRP 392
>gi|359475386|ref|XP_003631674.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g39710-like [Vitis vinifera]
Length = 762
Score = 59.7 bits (143), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 72/311 (23%), Positives = 131/311 (42%), Gaps = 11/311 (3%)
Query: 287 FFRWAEESGFVKHDESS-YNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGR 345
F+ ++S V + S+ ++ M + ID+ ++ +S G+ + + VL
Sbjct: 127 IFQCLKDSYHVYNSSSAVFDLMVKSYSHLNMIDQAVNTINLAKSSGFMPGVLSYNSVLDA 186
Query: 346 F-SERNMVK-EAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRL--FSKVVRVFRE 401
R VK A ++Y + + P+V L+R +L L F ++ R
Sbjct: 187 IVRSRGSVKLSAEEVYREMIRSRVSPNVYTYNILIRGFCSVGELQKGLGCFGEMER---- 242
Query: 402 NGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDE 461
NG + N+++ A +GR+ E +LK+M G + + I L G E
Sbjct: 243 NGCLPNVVTYNTLIDAYCKMGRIDEAFGLLKSMSSKGMQPNLISYNVIINGLCREGSMKE 302
Query: 462 ANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLV 521
A E ++ M G + + +L+ G+C G+ +A +MV + G S + L+
Sbjct: 303 AWEILEEMGYKGFTPDEVTYNTLLNGYCKEGNFHQALVIHAEMV-RNGVSPSVVTYTALI 361
Query: 522 NTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGF 581
N+ C K R ++ + +R L+P TY LI Q +A +L M + GF
Sbjct: 362 NSMC-KARNLNRAMEFFDQMRIRGLRPNERTYTTLIDGFSRQGLLNEAYRILNEMTESGF 420
Query: 582 PPFVDPFIKYV 592
P V + ++
Sbjct: 421 SPSVVTYNAFI 431
Score = 54.7 bits (130), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 78/375 (20%), Positives = 144/375 (38%), Gaps = 26/375 (6%)
Query: 303 SYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFA 362
+Y A+ + + + ++R + D+MR +G T ++ FS + ++ EA +
Sbjct: 356 TYTALINSMCKARNLNRAMEFFDQMRIRGLRPNERTYTTLIDGFSRQGLLNEAYRILNEM 415
Query: 363 MACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVG 422
PSV + V ++++ L VV+ E G ++++ G
Sbjct: 416 TESGFSPSVVTYNAFIHGHCVLERMEEAL--GVVQEMVEKGLAPDVVSYSTIISGFCRKG 473
Query: 423 RMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWV 482
+ ++ + M E G + S + L + EA + M G + +
Sbjct: 474 ELDRAFQMKQEMVEKGVSPDAVTYSSLIQGLCEMRRLTEACDLSQEMLDMGLPPDEFTYT 533
Query: 483 SLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVR 542
+LI +CV GDL+KA +M+ K G +L+N + R +A + + +
Sbjct: 534 TLINAYCVEGDLNKALHLHDEMIHK-GFLPDAVTYSVLINGLNKQARTREAKRLLFKLIY 592
Query: 543 EYDLKPWHTTYEELIKNLLVQRGFKDALSLL---CLM-----KDHGFPPFVD-------- 586
E + P TY+ LI+N FK ++L+ C+ D F V+
Sbjct: 593 EESV-PSDVTYDTLIEN-CSNIEFKSVVALIKGFCMKGLMHEADRVFESMVERNHKPGEA 650
Query: 587 ---PFIKYVSKSGTSDDAIAFLKGMTSKRF-PSMSVVLCLFAAFFQARRHSEAQDLLSKC 642
I + G A K M F P V+ L A F+ + E +++
Sbjct: 651 VYNVIIHGHCRGGNLPKAFNLYKEMIHSGFVPHTVTVITLIKALFKEGMNEEMSEVIGDT 710
Query: 643 PRYVR-NHADVLNLL 656
R R N A++ +L
Sbjct: 711 LRSCRLNEAELAKVL 725
Score = 44.3 bits (103), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 82/409 (20%), Positives = 147/409 (35%), Gaps = 57/409 (13%)
Query: 166 TYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRNKMTEKFEKEGLESDLEKLKGIF 225
+YN+++ + G ++E W +++ M KG+ N + + KEG +
Sbjct: 286 SYNVIINGLCREGSMKEAWEILEEMGYKGFTPDEVTYNTLLNGYCKEGNFHQALVIHAEM 345
Query: 226 ATGSIDNSIEKVASRICKVVRSDIWGDDVE-------RQLRDLNVTFSNDLVKFVVDKLG 278
+ S+ + I + ++ +E R LR T++ + F L
Sbjct: 346 VRNGVSPSVVTYTALINSMCKARNLNRAMEFFDQMRIRGLRPNERTYTTLIDGFSRQGLL 405
Query: 279 DEPKKAL-----------------------IFFRWAEESGFVKH--------DESSYNAM 307
+E + L + R E G V+ D SY+ +
Sbjct: 406 NEAYRILNEMTESGFSPSVVTYNAFIHGHCVLERMEEALGVVQEMVEKGLAPDVVSYSTI 465
Query: 308 ASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKN 367
S R+ +DR +++ EM KG + T ++ E + EA DL + +
Sbjct: 466 ISGFCRKGELDRAFQMKQEMVEKGVSPDAVTYSSLIQGLCEMRRLTEACDLSQEMLDMGL 525
Query: 368 KPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVL-KALISVGRMGE 426
P T L+ V L+ L + + L DA+ SVL L R E
Sbjct: 526 PPDEFTYTTLINAYCVEGDLNKALHLHDEMIHK---GFLPDAVTYSVLINGLNKQARTRE 582
Query: 427 CNKILKAMEEGGFIAS-----------SNMKSKIAFRLSSA----GKKDEANEFMDHMEA 471
++L + + S SN++ K L G EA+ + M
Sbjct: 583 AKRLLFKLIYEESVPSDVTYDTLIENCSNIEFKSVVALIKGFCMKGLMHEADRVFESMVE 642
Query: 472 SGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLL 520
G+ ++ +I GHC G+L KA + +++M+ H I L+
Sbjct: 643 RNHKPGEAVYNVIIHGHCRGGNLPKAFNLYKEMIHSGFVPHTVTVITLI 691
>gi|297844848|ref|XP_002890305.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297336147|gb|EFH66564.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 860
Score = 59.7 bits (143), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 92/457 (20%), Positives = 164/457 (35%), Gaps = 60/457 (13%)
Query: 178 GLVQEFWGLVDVMKKKGYGVASHVRNKMTEKFEKEGLESD-----------LEKLKGIFA 226
G V+ F + + M K ++ K T ++ ++S+ +E +KG
Sbjct: 228 GFVKGFRQVSNSMVGKSLPTTNNTYGKRTSVLQRPHIDSNRFVPSGFSNSSMEMVKGPPG 287
Query: 227 TGSIDNSI---EKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKK 283
T + + V+R WG E L++L + V+ ++ D
Sbjct: 288 TALTSRQYCNSGYIVENVSSVLRRFRWGPAAEEALQNLGLRIDAYQANQVLKQMNDY-GN 346
Query: 284 ALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVL 343
AL FF W + KHD +Y M LGR K+LDEM G + T +++
Sbjct: 347 ALGFFYWLKRQPGFKHDGHTYTTMVGNLGRAKQFGAINKLLDEMVRDGCQPNTVTYNRLI 406
Query: 344 GRFSERNMVKEAVDLYEFAMACKNKPS-VNCCTFL----------------LRKIVVSKQ 386
+ N + EA++++ KP V CT + R
Sbjct: 407 HSYGRANYLNEAMNVFNQMQEAGCKPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQAGGLS 466
Query: 387 LDMRLFSKVVRVFRENGNVLTDAML------NSVLKALISVGRMGECN----------KI 430
D +S ++ + G++ L L++ M + + K+
Sbjct: 467 PDTFTYSVIINCLGKAGHLPAAHKLFCEMVDQGCTPNLVTYNIMMDLHAKARNYQSALKL 526
Query: 431 LKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCV 490
+ M+ GF S + L G +EA M+ + ++ L+
Sbjct: 527 YRDMQNAGFEPDKVTYSIVMEVLGHCGYLEEAEAVFTEMQQKNWIPDEPVYGLLVDLWGK 586
Query: 491 AGDLDKAADCFQKMVEKEGTSHAGYAIDL-----LVNTYCSKNRAIDACKFVHNCVREYD 545
AG+++KA +Q M+ HAG ++ L++T+ N+ +A + + N +
Sbjct: 587 AGNVEKAWQWYQAML------HAGLLPNVPTCNSLLSTFLRVNKIAEAYELLQNML-ALG 639
Query: 546 LKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFP 582
L+P TY L+ R D LM G P
Sbjct: 640 LRPSLQTYTLLLSCCTDGRSKLDMGYCGQLMASTGHP 676
>gi|255581238|ref|XP_002531431.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223528950|gb|EEF30943.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 737
Score = 59.7 bits (143), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 87/441 (19%), Positives = 172/441 (39%), Gaps = 42/441 (9%)
Query: 241 ICKVV-RSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKH 299
+C+++ R W +E LR L + V V+ DE + AL FF WA +H
Sbjct: 76 VCRLIERRSAWNAKLEGDLRRLLRSLKPRQVCAVLQLQSDE-RIALDFFYWAGRQWRYRH 134
Query: 300 DESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLY 359
D Y M VL + +VL M +G E V+ +S ++ A+ +
Sbjct: 135 DPIVYYMMLQVLSKTKLCQGARRVLRLMVRRGIARRPEAFAHVMVSYSRAGKLRNAMQVL 194
Query: 360 EFAMACKNKPSVNCCTFLLRKIVVSKQLDMRL-FSKVVRVFRENGNVLTDAML------- 411
+P++ C + +V++ +L+ L F + +++ NV+T L
Sbjct: 195 TMMQKAGVEPNLLICNTAIHVLVMANKLEKALRFLERMQLVGITPNVVTYNCLIKGYCDL 254
Query: 412 -------------------------NSVLKALISVGRMGECNKILKAM-EEGGFIASSNM 445
+V+ L R+ E +++ M ++
Sbjct: 255 YQVEHAMELIAEMPFKGCPPDKVSYYTVMGFLCQDKRIKEVRNLMEKMVKDNKLFPDQVT 314
Query: 446 KSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMV 505
+ + LS G DEA EF+ E G V + +++ C+ G +D+A + +M+
Sbjct: 315 YNTLVHMLSKHGHADEALEFLRETEERGFQVDKVGYSAIVNSFCMQGRMDRAKEIVNEMI 374
Query: 506 EKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRG 565
K G S +VN C + +A K + + ++ KP +Y L+ L
Sbjct: 375 TK-GCSPDVVTYTAVVNGLCKVGKVEEAKKMLQQ-MYKHGCKPNTVSYTALLNGLCQHGN 432
Query: 566 FKDALSLLCLMKDHGFPPFVDPF---IKYVSKSGTSDDAIAFLKGMTSKR-FPSMSVVLC 621
+A ++ ++ + P + + + + G +A ++ M +K FP+ +
Sbjct: 433 SLEAREMMNTSEEDWWTPNAITYSVVMHGLRREGKLSEACDVVREMLTKGFFPTPVEINL 492
Query: 622 LFAAFFQARRHSEAQDLLSKC 642
L + ++ +EA+ + +C
Sbjct: 493 LIKSLCLEQKMNEAKKFMEEC 513
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 75/340 (22%), Positives = 136/340 (40%), Gaps = 30/340 (8%)
Query: 283 KALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKV 342
+AL F R EE GF + D+ Y+A+ + + +DR ++++EM +KG ++ T V
Sbjct: 330 EALEFLRETEERGF-QVDKVGYSAIVNSFCMQGRMDRAKEIVNEMITKGCSPDVVTYTAV 388
Query: 343 LGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVV-SKQLDMRLFSKVVRVFRE 401
+ + V+EA + + KP+ T LL + L+ R
Sbjct: 389 VNGLCKVGKVEEAKKMLQQMYKHGCKPNTVSYTALLNGLCQHGNSLEAREMMNTSEEDWW 448
Query: 402 NGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDE 461
N +T ++ V+ L G++ E +++ M GF + + + L K +E
Sbjct: 449 TPNAITYSV---VMHGLRREGKLSEACDVVREMLTKGFFPTPVEINLLIKSLCLEQKMNE 505
Query: 462 ANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLV 521
A +FM+ G V + ++I G C + ++D A M A ++
Sbjct: 506 AKKFMEECLNRGCAVNAVNFTTVIHGFCQSDNIDTALSLLDDMYLNNKHPDA-VTFTAII 564
Query: 522 NTYCSKNRAIDACKFVHNCVREYDLKPWHTTY-------------EELIKNL--LVQR-- 564
+ K R +A + +++ L P TY EELIK L ++ R
Sbjct: 565 DALGKKGRIEEATVYTMKMLKK-GLDPTPVTYRAVIHQYCKMGRVEELIKLLGKMLSRSK 623
Query: 565 ---GFKDALSLLCLMKDHGFPPFVDPFIKYVSKSGTSDDA 601
+ + LC + G P D + V ++ + DA
Sbjct: 624 CRTAYNQVIEKLC---NFGNPEAADKVVGLVLRTASRIDA 660
>gi|218184398|gb|EEC66825.1| hypothetical protein OsI_33257 [Oryza sativa Indica Group]
Length = 948
Score = 59.3 bits (142), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 89/409 (21%), Positives = 157/409 (38%), Gaps = 37/409 (9%)
Query: 263 VTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWK 322
TF+ + + +LG +AL R G V D Y + L + +
Sbjct: 174 TTFTFGVAARALCRLG-RANEALALLRGMARHGCVP-DAVLYQTVIHALCDQGGVTEAAT 231
Query: 323 VLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIV 382
+L+EM G ++ T V+ V+EA L + M P V FLL+ +
Sbjct: 232 LLNEMLLMGCAADVNTFDDVVRGMCGLGRVREAARLVDRMMTKGCMPGVMTYGFLLQGLC 291
Query: 383 VSKQ-------------LDMRLFSKVVRVFRENGNVL---------------TDAMLNSV 414
+Q L++ LF+ V+ G + DA S+
Sbjct: 292 RVRQADEARAMLGRVPELNVVLFNTVIGGCLAEGKLAEATELYETMGLKGCQPDAHTYSI 351
Query: 415 L-KALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASG 473
L L +GR+ ++L+ ME+ GF + + + G D+ ++ M A G
Sbjct: 352 LMHGLCKLGRISSAVRLLREMEKKGFAPNVVTYTIVLHSFCKNGMWDDTRALLEEMSAKG 411
Query: 474 SDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDA 533
+ + + +I C G +D+A Q+M +G + + + ++ C+ + +A
Sbjct: 412 LTLNSQGYNGMIYALCKDGRMDEAMGLIQEM-RSQGCNPDICSYNTIIYHLCNNEQMEEA 470
Query: 534 CKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFV---DPFIK 590
N + E + TY +I LL ++DA+ L M HG V + IK
Sbjct: 471 EHMFENLLEE-GVVANGITYNTIIHALLRDGRWQDAVRLAKEMILHGCSLDVVSYNGLIK 529
Query: 591 YVSKSGTSDDAIAFLKGMTSKRF-PSMSVVLCLFAAFFQARRHSEAQDL 638
+ K G D ++ L+ M K P+ L + + RR +A +L
Sbjct: 530 AMCKDGNVDRSLVLLEEMAEKGIKPNNVSYNILISELCKERRVRDALEL 578
Score = 48.1 bits (113), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 72/351 (20%), Positives = 132/351 (37%), Gaps = 58/351 (16%)
Query: 342 VLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRE 401
V+G + EA +LYE +P + + L+ + + S VR+ RE
Sbjct: 317 VIGGCLAEGKLAEATELYETMGLKGCQPDAHTYSILMHGLC-----KLGRISSAVRLLRE 371
Query: 402 ------NGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSS 455
NV+T + VL + G + +L+ M G +S + + + L
Sbjct: 372 MEKKGFAPNVVTYTI---VLHSFCKNGMWDDTRALLEEMSAKGLTLNSQGYNGMIYALCK 428
Query: 456 AGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGY 515
G+ DEA + M + G + + ++I C +++A F+ ++E EG G
Sbjct: 429 DGRMDEAMGLIQEMRSQGCNPDICSYNTIIYHLCNNEQMEEAEHMFENLLE-EGVVANGI 487
Query: 516 AIDLLVNTYCSKNRAIDACKF-----VHNC-----------------------------V 541
+ +++ R DA + +H C +
Sbjct: 488 TYNTIIHALLRDGRWQDAVRLAKEMILHGCSLDVVSYNGLIKAMCKDGNVDRSLVLLEEM 547
Query: 542 REYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFV---DPFIKYVSKSGTS 598
E +KP + +Y LI L +R +DAL L M + G P + + I + K G
Sbjct: 548 AEKGIKPNNVSYNILISELCKERRVRDALELSKQMLNQGLAPDIVTYNTLINGLCKMGWM 607
Query: 599 DDAIAFLKGMTSKRF-PSMSVVLCLFAAFFQARRHSEAQDLLSK-----CP 643
A+ L+ + ++ P + L + + R +A LL++ CP
Sbjct: 608 HAALNLLEKLHNENVHPDIITYNILISWHCKVRLLDDAAMLLNRAMAAVCP 658
>gi|15224262|ref|NP_179484.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75099137|sp|O64624.1|PP163_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g18940
gi|3004555|gb|AAC09028.1| putative salt-inducible protein [Arabidopsis thaliana]
gi|15983785|gb|AAL10489.1| At2g18940/F19F24.14 [Arabidopsis thaliana]
gi|38564280|gb|AAR23719.1| At2g18940/F19F24.14 [Arabidopsis thaliana]
gi|330251736|gb|AEC06830.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 822
Score = 59.3 bits (142), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 63/315 (20%), Positives = 127/315 (40%), Gaps = 26/315 (8%)
Query: 282 KKALIFFRW---AEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMET 338
++A+ F W + SG +K D +LGRE K+LD++ + Y +++
Sbjct: 153 ERAVFLFEWLVLSSNSGALKLDHQVIEIFVRILGRESQYSVAAKLLDKIPLQEYLLDVRA 212
Query: 339 CVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRV 398
+L +S ++A+DL+E P+ +V+ + + +F K+ R
Sbjct: 213 YTTILHAYSRTGKYEKAIDLFERMKEMGPSPT-----------LVTYNVILDVFGKMGRS 261
Query: 399 FRENGNVLTDA----------MLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSK 448
+R+ VL + ++VL A G + E + ++ G+ + +
Sbjct: 262 WRKILGVLDEMRSKGLKFDEFTCSTVLSACAREGLLREAKEFFAELKSCGYEPGTVTYNA 321
Query: 449 IAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKE 508
+ AG EA + ME + + L+ + AG +AA + M+ K+
Sbjct: 322 LLQVFGKAGVYTEALSVLKEMEENSCPADSVTYNELVAAYVRAGFSKEAAGVIE-MMTKK 380
Query: 509 GTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKD 568
G +++ Y + +A K ++ ++E P TY ++ L + +
Sbjct: 381 GVMPNAITYTTVIDAYGKAGKEDEALKLFYS-MKEAGCVPNTCTYNAVLSLLGKKSRSNE 439
Query: 569 ALSLLCLMKDHGFPP 583
+ +LC MK +G P
Sbjct: 440 MIKMLCDMKSNGCSP 454
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 70/321 (21%), Positives = 132/321 (41%), Gaps = 48/321 (14%)
Query: 303 SYNAMASVLGREDCIDRFWK----VLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDL 358
+YN + V G+ + R W+ VLDEMRSKG + + TC VL + +++EA +
Sbjct: 247 TYNVILDVFGK---MGRSWRKILGVLDEMRSKGLKFDEFTCSTVLSACAREGLLREAKEF 303
Query: 359 YEFAMACKNKPSVNCCTFLLR----------KIVVSKQL-------DMRLFSKVVRVFRE 401
+ +C +P LL+ + V K++ D ++++V +
Sbjct: 304 FAELKSCGYEPGTVTYNALLQVFGKAGVYTEALSVLKEMEENSCPADSVTYNELVAAYVR 363
Query: 402 NG---------------NVLTDAML-NSVLKALISVGRMGECNKILKAMEEGGFIASSNM 445
G V+ +A+ +V+ A G+ E K+ +M+E G + ++
Sbjct: 364 AGFSKEAAGVIEMMTKKGVMPNAITYTTVIDAYGKAGKEDEALKLFYSMKEAGCVPNTCT 423
Query: 446 KSKIAFRLSSAGKKDEANEFMD---HMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQ 502
+ + LS GKK +NE + M+++G W +++ C +DK +
Sbjct: 424 YNAV---LSLLGKKSRSNEMIKMLCDMKSNGCSPNRATWNTML-ALCGNKGMDKFVNRVF 479
Query: 503 KMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLV 562
+ ++ G + L++ Y +DA K R TTY L+ L
Sbjct: 480 REMKSCGFEPDRDTFNTLISAYGRCGSEVDASKMYGEMTRA-GFNACVTTYNALLNALAR 538
Query: 563 QRGFKDALSLLCLMKDHGFPP 583
+ ++ +++ MK GF P
Sbjct: 539 KGDWRSGENVISDMKSKGFKP 559
>gi|388490582|gb|AFK33357.1| unknown [Medicago truncatula]
Length = 389
Score = 59.3 bits (142), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 66/314 (21%), Positives = 138/314 (43%), Gaps = 12/314 (3%)
Query: 303 SYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFA 362
+Y+ + +E +D K+LD++ +KG + + + +L + ++A+ L++
Sbjct: 26 TYSILIEAAYKERGVDEAMKLLDDIIAKGGKPNLVSYNVLLTGLCKEGRTEDAIKLFKEL 85
Query: 363 MACKNKPSVNCCTFLLRKIVVSKQLD--MRLFSKVVRVFRENGNVLTDAMLNSVLKALIS 420
KP V LLR + + D L + + R +G + N ++ +L
Sbjct: 86 PEKGFKPCVVSHNILLRSLCYEGRWDEAYELMAGMDR----DGQAPSVVTYNVLITSLSI 141
Query: 421 VGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKM 480
GR+ + K+L M + GF S+N + I RL G+ D + +D M +
Sbjct: 142 DGRIEQAFKVLDEMTKSGFKVSANSYNPIIARLCKEGRVDLVVQCLDQMINRRFHLNGGT 201
Query: 481 WVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNC 540
+ + I C G + +A +++ +K+ + + + ++ C K A + ++
Sbjct: 202 Y-NAIALLCERGMVKEAFLILERLGKKQNYPISDFYKN-VITLLCRKGSTYPAFQILYE- 258
Query: 541 VREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPF---IKYVSKSGT 597
+ + P TY LI+ + + +AL + ++++HG+ P VD + I + KS
Sbjct: 259 MTVHGFTPDSYTYSSLIRGMCREGMLDEALQIFGILEEHGYVPHVDNYNALILGLCKSQR 318
Query: 598 SDDAIAFLKGMTSK 611
D +I + M +K
Sbjct: 319 IDMSIEIFQMMVNK 332
Score = 40.0 bits (92), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 44/185 (23%), Positives = 78/185 (42%), Gaps = 12/185 (6%)
Query: 293 ESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMV 352
+SGF K +SYN + + L +E +D + LD+M ++ + + T + ER MV
Sbjct: 157 KSGF-KVSANSYNPIIARLCKEGRVDLVVQCLDQMINRRFHLNGGT-YNAIALLCERGMV 214
Query: 353 KEAVDLYEFAMACKNKPSV----NCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTD 408
KEA + E +N P N T L RK + L+ V F + +
Sbjct: 215 KEAFLILERLGKKQNYPISDFYKNVITLLCRKGSTYPAFQI-LYEMTVHGFTPDSYTYS- 272
Query: 409 AMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDH 468
S+++ + G + E +I +EE G++ + + + L + + D + E
Sbjct: 273 ----SLIRGMCREGMLDEALQIFGILEEHGYVPHVDNYNALILGLCKSQRIDMSIEIFQM 328
Query: 469 MEASG 473
M G
Sbjct: 329 MVNKG 333
>gi|225428586|ref|XP_002281132.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g15980-like [Vitis vinifera]
Length = 492
Score = 59.3 bits (142), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 50/198 (25%), Positives = 77/198 (38%), Gaps = 4/198 (2%)
Query: 414 VLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASG 473
++ A GRMGE K+ + M + I G+ + E ME SG
Sbjct: 286 LMAAFCDEGRMGEVEKLWEEMRMKKMEHDIMAYNTIIGGFCRIGEIERGEELFREMELSG 345
Query: 474 SDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDA 533
+ LI G+C GD+D A ++ M K G +D ++ C+ R +A
Sbjct: 346 IQSTCVTYEHLINGYCEIGDVDSAVLLYKDMCRK-GFRAEARTVDGMILLLCNNRRVHEA 404
Query: 534 CKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVD---PFIK 590
K + + + P +YE LIK + ++A L M GF P ++ FI
Sbjct: 405 LKLLRVAMGNVEFAPRGKSYETLIKGFCEEGKMEEASKLQSEMVGKGFKPTLEIYSAFID 464
Query: 591 YVSKSGTSDDAIAFLKGM 608
K G + A K M
Sbjct: 465 GYMKQGNKEIAETLRKEM 482
>gi|255566203|ref|XP_002524089.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223536657|gb|EEF38299.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 1072
Score = 59.3 bits (142), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 78/384 (20%), Positives = 156/384 (40%), Gaps = 14/384 (3%)
Query: 232 NSIEKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRW- 290
+S E+ ICK++ S ++ L + F+ LV ++ AL FF W
Sbjct: 650 SSNEQDLKEICKILSSSKDWCIMQEALEKCTLQFTPGLVLEILHNCSMHGNAALKFFSWL 709
Query: 291 AEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERN 350
++G+ H + +YN + GRE + EMR KG + +T ++ ++
Sbjct: 710 GVQTGYC-HTKETYNMAMKISGREKDFKHMRSLFYEMRRKGCLITPDTWAIMIMQYGRTG 768
Query: 351 MVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRE---NGNVLT 407
+ + ++ + P+ + +LL + K R + +++F E +
Sbjct: 769 LTEISLKTFTEMKDNGYIPNDSTYKYLLISLCGKKG---RKVDEAIKIFHEMIRTRYIPD 825
Query: 408 DAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMD 467
++ + L L GR+ E K ++ G+ + I L +G+ +EA +D
Sbjct: 826 REVVGTYLSCLCEAGRLSEARKSTDSLCRIGYTIPLSYSLYIR-ALCRSGRLEEALSLLD 884
Query: 468 HMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSK 527
+ S + + +L+ G G ++A + M E L+V+ + K
Sbjct: 885 EVGTERSTLDQYTYGTLVHGLLRKGRQEEALAKIESMKEAGINPTVHVYTSLIVHFF--K 942
Query: 528 NRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDP 587
+ I+ + +++ +P TY LI+ + DA S+L +K G P
Sbjct: 943 EKQIEKAMQIFEKMQQDGCEPTVVTYSALIRGYMNMERADDAWSVLNHLKLKGPKPDFKT 1002
Query: 588 FIKYVS---KSGTSDDAIAFLKGM 608
+ ++S K+G S++A+ L M
Sbjct: 1003 YSMFISCLCKAGKSEEALQLLSRM 1026
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 80/455 (17%), Positives = 176/455 (38%), Gaps = 43/455 (9%)
Query: 234 IEKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEE 293
+ V I +VR++ +E +L +L F ++V+ V+ + P A FF W +
Sbjct: 143 VSPVVREITGIVRAENDLVAMEERLENLGFYFEPEIVEKVLKRCFKVPHLAFRFFSWVKM 202
Query: 294 SGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVK 353
H +Y M + G +++EM E +++T ++ +F + ++
Sbjct: 203 RDGFCHTTKTYYTMLYIAGEAKEFKVVDDLVEEMEKNSCEKDIKTWSILISQFGKAKLIG 262
Query: 354 EAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNS 413
+A+ +E +P ++ + + + ++ L + + L ++
Sbjct: 263 KALLFFEKMKTSGCEPDEKIYKMMVHSLCNAGKGEVAL--AFYKEMVQKDMRLDLSLYKI 320
Query: 414 VLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASG 473
+L ++ G +G + + M I ++ I AGK EA E + ++
Sbjct: 321 LLISMAKSGDVGAVHLVANDMSRLSQIPEHDVNVCILKSFCVAGKIREALELIRDLKNKD 380
Query: 474 SDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDA 533
+ + +L+KG C + A + + M ++ Y I ++N Y K A
Sbjct: 381 ILIDYEYLGTLVKGLCRGDRITDAVEIVEIMKKRNLIDAKIYGI--IINGYLRKKDLSKA 438
Query: 534 CKFVHNCVREYDLKPWHTTYEELIK---------------NLLVQRGFK-DALSLLCL-- 575
+ ++E ++P +TY EL++ N +++RG + D+++ + +
Sbjct: 439 IELFQR-MKESGIQPITSTYTELMQCLFNLNQYDKGFELFNEMLERGIRVDSVATMAIVA 497
Query: 576 -----------------MKDHGFPPF---VDPFIKYVSKSGTSDDAIAFLKGMTSKRFPS 615
MKD G P FIK + + +D+ + L M + +
Sbjct: 498 AHVRQNHISEAWEVFNTMKDKGANPTWKSYSIFIKELCRVSRTDEILKVLYKMQASKIFI 557
Query: 616 MSVVLCLFAAFFQARRHSEAQDLLSKCPRYVRNHA 650
+ + L AF + + + + + R R H+
Sbjct: 558 NNDIFNLAIAFMEKKGEVDNVQKVKQMQRICRLHS 592
Score = 40.8 bits (94), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 39/72 (54%)
Query: 104 VSDIFYKFSDVNDISKQLELSGVVFTHEMVLKVLKNLESSPDEARRFFNWVLEKESERLS 163
++ I +D+ + ++LE G F E+V KVLK P A RFF+WV ++ +
Sbjct: 150 ITGIVRAENDLVAMEERLENLGFYFEPEIVEKVLKRCFKVPHLAFRFFSWVKMRDGFCHT 209
Query: 164 SKTYNLMLRIVG 175
+KTY ML I G
Sbjct: 210 TKTYYTMLYIAG 221
Score = 40.4 bits (93), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 34/148 (22%), Positives = 61/148 (41%), Gaps = 1/148 (0%)
Query: 86 CSYSSEPAMEQKESDFTVVSDIFYKFSDVNDISKQLELSGVVFTHEMVLKVLKNLESSPD 145
C + E D + I D + + LE + FT +VL++L N +
Sbjct: 641 CQLAKPHPKSSNEQDLKEICKILSSSKDWCIMQEALEKCTLQFTPGLVLEILHNCSMHGN 700
Query: 146 EARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRNKM 205
A +FF+W+ + + +TYN+ ++I G + L M++KG + M
Sbjct: 701 AALKFFSWLGVQTGYCHTKETYNMAMKISGREKDFKHMRSLFYEMRRKGCLITPDTWAIM 760
Query: 206 TEKFEKEGL-ESDLEKLKGIFATGSIDN 232
++ + GL E L+ + G I N
Sbjct: 761 IMQYGRTGLTEISLKTFTEMKDNGYIPN 788
>gi|449487696|ref|XP_004157755.1| PREDICTED: uncharacterized protein LOC101223774 [Cucumis sativus]
Length = 1315
Score = 59.3 bits (142), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 102/500 (20%), Positives = 195/500 (39%), Gaps = 52/500 (10%)
Query: 121 LELSGVVFTHEMVLKVLKNLESSPDE--ARRFFNWVLEKESERLSSKTYNL-MLRIVG-- 175
L++ THE + + L S A FF W + R + Y + + +VG
Sbjct: 696 LDMDAASLTHEQAISAVALLASEEGSMVALSFFYWAVGFPKFRYFMRLYIVCTMSLVGKC 755
Query: 176 ----VHGLVQEFWGL----------VDV---MKKKGYGVASHVRNKMT------EKFEKE 212
H +V+ G+ VD+ M+ +G + + V N++ E
Sbjct: 756 NLERAHEVVECMVGVFAEIGKLKEAVDMILDMRNQGLVLTTRVMNRIILVAAEMRLVEYA 815
Query: 213 GLESDLEKLKGIFATGSIDNSIEKVASRICKVVRSDIW-GDDVERQLRDLNVTFSNDLVK 271
G D +G++ I R V+ +D W + +ER N T + +
Sbjct: 816 GNVFDEMSARGVYPDSCTYKYIIVGYCRNGNVLEADRWICEMMERGFVVDNATLTLIITA 875
Query: 272 FVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKG 331
F L + +A+ FF + G + + +Y++M S L + + + +++L+EM G
Sbjct: 876 FCEKSLVN---RAVWFFHKVTKMG-LSPNLINYSSMISGLCKRGSVKQAFELLEEMVKNG 931
Query: 332 YEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKN-KPSVNCCTFLLRKIVVSKQLDMR 390
++ + T ++ ++ + A L+ + N KP+V+ T ++ ++L
Sbjct: 932 WKPNVYTHTSLIHGLCKKGWTERAFRLFLKLIRSDNYKPNVHTYTAMISGYCKEEKLSRA 991
Query: 391 --LFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSK 448
LF ++ +E G V +++ G + ++++ M GF ++ +
Sbjct: 992 EMLFERM----KEQGLVPNTNTYTTLIDGHCKAGNFSKAYELMELMSNEGFFPNTCTYNS 1047
Query: 449 IAFRLSSAGKKDEA-----NEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQK 503
I L G+ +EA F + +EA G + LI C D+++A K
Sbjct: 1048 IVDGLCKRGRAEEAFKLLNTGFQNQIEADGV-----TYTILISEQCKRADMNQALVFLNK 1102
Query: 504 MVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQ 563
M K G + L+ +C +N D+ K ++ L P TY +I +
Sbjct: 1103 MF-KVGFQPDIHLYTTLIAAFCRQNMMKDSEKLFDEVIK-LGLAPTKETYTSMICGYCRE 1160
Query: 564 RGFKDALSLLCLMKDHGFPP 583
+ A+ M DHG P
Sbjct: 1161 KKVSLAVKFFQKMSDHGCAP 1180
Score = 47.0 bits (110), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 61/290 (21%), Positives = 118/290 (40%), Gaps = 15/290 (5%)
Query: 323 VLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIV 382
+LD MR++G + +++ +E +V+ A ++++ A P + CT+ +
Sbjct: 784 ILD-MRNQGLVLTTRVMNRIILVAAEMRLVEYAGNVFDEMSARGVYP--DSCTYKYIIVG 840
Query: 383 VSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGEC----NKILKAMEEGG 438
+ ++ + + E G V+ +A L ++ A + +K+ K
Sbjct: 841 YCRNGNVLEADRWICEMMERGFVVDNATLTLIITAFCEKSLVNRAVWFFHKVTKMGLSPN 900
Query: 439 FIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAA 498
I S+M S + R G +A E ++ M +G SLI G C G ++A
Sbjct: 901 LINYSSMISGLCKR----GSVKQAFELLEEMVKNGWKPNVYTHTSLIHGLCKKGWTERAF 956
Query: 499 DCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIK 558
F K++ + + +++ YC K + + + ++E L P TY LI
Sbjct: 957 RLFLKLIRSDNYKPNVHTYTAMISGYC-KEEKLSRAEMLFERMKEQGLVPNTNTYTTLID 1015
Query: 559 NLLVQRGFKDALSLLCLMKDHGFPPFV---DPFIKYVSKSGTSDDAIAFL 605
F A L+ LM + GF P + + + K G +++A L
Sbjct: 1016 GHCKAGNFSKAYELMELMSNEGFFPNTCTYNSIVDGLCKRGRAEEAFKLL 1065
>gi|297741402|emb|CBI32533.3| unnamed protein product [Vitis vinifera]
Length = 299
Score = 59.3 bits (142), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 50/198 (25%), Positives = 77/198 (38%), Gaps = 4/198 (2%)
Query: 414 VLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASG 473
++ A GRMGE K+ + M + I G+ + E ME SG
Sbjct: 93 LMAAFCDEGRMGEVEKLWEEMRMKKMEHDIMAYNTIIGGFCRIGEIERGEELFREMELSG 152
Query: 474 SDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDA 533
+ LI G+C GD+D A ++ M K G +D ++ C+ R +A
Sbjct: 153 IQSTCVTYEHLINGYCEIGDVDSAVLLYKDMCRK-GFRAEARTVDGMILLLCNNRRVHEA 211
Query: 534 CKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVD---PFIK 590
K + + + P +YE LIK + ++A L M GF P ++ FI
Sbjct: 212 LKLLRVAMGNVEFAPRGKSYETLIKGFCEEGKMEEASKLQSEMVGKGFKPTLEIYSAFID 271
Query: 591 YVSKSGTSDDAIAFLKGM 608
K G + A K M
Sbjct: 272 GYMKQGNKEIAETLRKEM 289
>gi|147797621|emb|CAN62945.1| hypothetical protein VITISV_002230 [Vitis vinifera]
Length = 912
Score = 59.3 bits (142), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 72/289 (24%), Positives = 126/289 (43%), Gaps = 21/289 (7%)
Query: 303 SYNAMASVLGREDCIDRFWKVLDEMRSKGY-EMEMETCVKVLGRFSERNMVKEAVDLYEF 361
SYNA+ V + + I V D++ +G + ++ T ++ + + M++ A ++++
Sbjct: 219 SYNAILGVFVKANRIMLARAVFDQIVKEGVVKPDVSTYTTIIRGYCKMGMIENAKNVFD- 277
Query: 362 AMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISV 421
M CK N T+ K+ M K+V E + + D + + L +
Sbjct: 278 EMGCKP----NLVTYNTMINGFCKKGLMESAMKIVDQMTETEDCMPDTVTYTTL--IDGY 331
Query: 422 GRMGECNKILKAMEEGGFIASSNMK------SKIAFRLSSAGKKDEANEFMDHMEASGSD 475
+ GE + +K MEE + S N + + I + L G DEA M M +G
Sbjct: 332 CKRGELEEAMKYMEE---MVSRNCEPNVLTYNAIIYGLCLNGNVDEAKRMMTRMRLNGLK 388
Query: 476 VGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACK 535
S++KG CV G LD AA ++MV G A ++VN YC +A DA
Sbjct: 389 DNVATHTSILKGLCVVGKLDDAARHLKEMV-GLGMEADAKAYGVVVNEYCKIGKADDAIS 447
Query: 536 FVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLC-LMKDHGFPP 583
+ ++ + P +++ + + +LV+ G D L+ MK G P
Sbjct: 448 LLKE-MKSRGINPSVSSFNAVFR-ILVESGKTDKAGLILRQMKQLGCTP 494
Score = 49.7 bits (117), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 66/322 (20%), Positives = 140/322 (43%), Gaps = 12/322 (3%)
Query: 303 SYNAMASVLGREDCIDRFWKVLDEMRSKGYEM-EMETCVKVLGRFSERNMVKEAVDLYEF 361
+YN M + ++ ++ K++D+M M + T ++ + +R ++EA+ E
Sbjct: 287 TYNTMINGFCKKGLMESAMKIVDQMTETEDCMPDTVTYTTLIDGYCKRGELEEAMKYMEE 346
Query: 362 AMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISV 421
++ +P+V ++ + ++ +D +++ R NG A S+LK L V
Sbjct: 347 MVSRNCEPNVLTYNAIIYGLCLNGNVDEA--KRMMTRMRLNGLKDNVATHTSILKGLCVV 404
Query: 422 GRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMW 481
G++ + + LK M G A + + GK D+A + M++ G + +
Sbjct: 405 GKLDDAARHLKEMVGLGMEADAKAYGVVVNEYCKIGKADDAISLLKEMKSRGINPSVSSF 464
Query: 482 VSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYC-SKNRAIDACKFVHN- 539
++ + +G DKA ++M ++ G + + +++ C +K R + +FV +
Sbjct: 465 NAVFRILVESGKTDKAGLILRQM-KQLGCTPNFLSYSTVIDGLCKAKGRMHEVEEFVDDM 523
Query: 540 CVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPFIKYVSKSGTSD 599
C + L + Y L+K A+ L C M D G+ ++ F+ +V +
Sbjct: 524 CRNGHHLDA--SMYSWLVKGYCEDGNADMAMRLFCEMLDMGYVINLESFLAFVKGLSAKE 581
Query: 600 DAI---AFLKGMTSKRFPSMSV 618
A F + M S+R P + +
Sbjct: 582 KAFEVEKFFEEM-SRRCPGIDI 602
Score = 46.6 bits (109), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 44/160 (27%), Positives = 72/160 (45%), Gaps = 16/160 (10%)
Query: 411 LNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSA-GKKDEANEFMDHM 469
N+V + L+ G+ + IL+ M++ G + S + L A G+ E EF+D M
Sbjct: 464 FNAVFRILVESGKTDKAGLILRQMKQLGCTPNFLSYSTVIDGLCKAKGRMHEVEEFVDDM 523
Query: 470 EASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDL-----LVNTY 524
+G + M+ L+KG+C G+ D A F +M++ GY I+L V
Sbjct: 524 CRNGHHLDASMYSWLVKGYCEDGNADMAMRLFCEMLD------MGYVINLESFLAFVKGL 577
Query: 525 CSKNRAIDACKFVHNCVRE---YDLKPWHTTYEE-LIKNL 560
+K +A + KF R D+ + +E L KNL
Sbjct: 578 SAKEKAFEVEKFFEEMSRRCPGIDIHKYRRILDEHLCKNL 617
>gi|11079489|gb|AAG29201.1|AC078898_11 hypothetical protein [Arabidopsis thaliana]
Length = 481
Score = 59.3 bits (142), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 104/494 (21%), Positives = 182/494 (36%), Gaps = 82/494 (16%)
Query: 104 VSDIFYKFSDVNDISKQLEL------SGVVFTHEMVLKVLKNLESSPDEARRFFNWVLEK 157
V+D+ S V S QL L SG+ + E+V VL ++ RFF W ++
Sbjct: 32 VADVAKNISKVLMSSPQLVLDSALDQSGLRVSQEVVEDVLNRFRNAGLLTYRFFQWSEKQ 91
Query: 158 ESERLSSKTYNLMLRIVGVHGLVQEFWGLVDVMKKKG-------------YGVASHVRNK 204
S + Y++M+ + W L++ M+KK Y A V
Sbjct: 92 RHYEHSVRAYHMMIESTAKIRQYKLMWDLINAMRKKKMLNVETFCIVMRKYARAQKVDEA 151
Query: 205 MT--EKFEKEGLESDLEKLKGIFATGSIDNSIEKVASRICKVVRSDIWGDDVERQLRDLN 262
+ EK L +L G+ + ++ K +V +RD
Sbjct: 152 IYAFNVMEKYDLPPNLVAFNGLLSALCKSKNVRK--------------AQEVFENMRD-R 196
Query: 263 VTFSNDLVKFVVDKLGDEPK--KALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRF 320
T + +++ G EP KA FR ++G D +Y+ M +L + +D
Sbjct: 197 FTPDSKTYSILLEGWGKEPNLPKAREVFREMIDAG-CHPDIVTYSIMVDILCKAGRVDEA 255
Query: 321 WKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRK 380
++ M + ++ + N ++EAVD +
Sbjct: 256 LGIVRSMDPSICKPTTFIYSVLVHTYGTENRLEEAVDTF--------------------- 294
Query: 381 IVVSKQLDMRLFSKVVRVFRENGNVLTD-AMLNSVLKALISVGRMGECNKILKAMEEGGF 439
L+M E + D A+ NS++ A RM ++LK M+ G
Sbjct: 295 ------LEM-----------ERSGMKADVAVFNSLIGAFCKANRMKNVYRVLKEMKSKGV 337
Query: 440 IASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAAD 499
+S + I L G+KDEA + M D + +IK C +++ AD
Sbjct: 338 TPNSKSCNIILRHLIERGEKDEAFDVFRKMIKVCEPDADT-YTMVIKMFCEKKEME-TAD 395
Query: 500 CFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKN 559
K + K+G + + +L+N C + AC + + E ++P T+ L +
Sbjct: 396 KVWKYMRKKGVFPSMHTFSVLINGLCEERTTQKACVLLEEMI-EMGIRPSGVTFGRL-RQ 453
Query: 560 LLVQRGFKDALSLL 573
LL++ +D L L
Sbjct: 454 LLIKEEREDVLKFL 467
>gi|357487731|ref|XP_003614153.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355515488|gb|AES97111.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 691
Score = 59.3 bits (142), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 58/202 (28%), Positives = 90/202 (44%), Gaps = 10/202 (4%)
Query: 412 NSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAG-KKDEANEFMDHME 470
N+ + L+ GR + K+ ++ME G + S + + G +A +F + M
Sbjct: 252 NAAISGLLYDGRYKDAWKVYESMETDGVLPDHVTCSIMIIGMRKLGHSAKDAWQFFEKMN 311
Query: 471 ASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRA 530
G G + + +LIK CV G L +A Q +EK+G S + L++ YC NR
Sbjct: 312 QKGVRWGKEAFGALIKSFCVEGLLSEAL-IIQSEMEKKGISSNAIVYNTLMDAYCKSNRV 370
Query: 531 IDA-CKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPFI 589
+A FV ++ +KP T+ L+ + K SLL MKD G P + +
Sbjct: 371 EEAEGLFVE--MKAKGIKPTAVTFNILMYAYSRRMQPKIVESLLAEMKDFGLKPNANSYT 428
Query: 590 KYVSKSG----TSDDAI-AFLK 606
+S G SD A AFLK
Sbjct: 429 CLISAYGRQKKMSDMAADAFLK 450
>gi|359472741|ref|XP_003631192.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g19890-like [Vitis vinifera]
Length = 708
Score = 59.3 bits (142), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 80/367 (21%), Positives = 139/367 (37%), Gaps = 28/367 (7%)
Query: 264 TFSNDLVKFVVDKLGDEPKK--ALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFW 321
+ ++D VV L DE AL F WA +H Y A+ L ++R
Sbjct: 95 SLTHDQAITVVASLADEAGSMVALSFLYWAIGFPKFRHFMRLYIVSATALIGNKNLERAN 154
Query: 322 KVLD--------------------EMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEF 361
+V+ EM+++G +T VL +V+ A ++ F
Sbjct: 155 EVMQCMVMNFAENGKLKEAVNMVVEMQNQGLVPSTQTLNCVLDVAVGMGLVEIAENM--F 212
Query: 362 AMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISV 421
C+ S +C +F L + + + + E G ++ +A ++ A
Sbjct: 213 VEMCQRGVSPDCVSFKLMVVACCNMGRVLEAERWLNAMVERGFIVDNATCTLIIDAFCQK 272
Query: 422 GRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMW 481
G + M E G + + + L G +A E ++ M G
Sbjct: 273 GYVNRVVGYFWKMVEMGLAPNVINFTALINGLCKQGSIKQAFELLEEMVRRGWKPNVYTH 332
Query: 482 VSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCV 541
+LI G C G +KA F K+V +G + ++N YC +++ ++ + + + +
Sbjct: 333 TTLIDGLCKKGWTEKAFRLFLKLVRSDGYKPNVHTYTAMINGYCKEDK-LNRAEMLLSRM 391
Query: 542 REYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFV---DPFIKYVSKSGTS 598
+E L P TY LI F A L+ LM GF P + + I + K G+
Sbjct: 392 QEQGLVPNTNTYTTLIDGHCKVGNFVRAYELMDLMGKEGFSPNIYTYNAIIDGLCKKGSL 451
Query: 599 DDAIAFL 605
D+A L
Sbjct: 452 DEAYRLL 458
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 75/342 (21%), Positives = 137/342 (40%), Gaps = 38/342 (11%)
Query: 289 RWAE---ESGFVKHDESSYNAMASVLGREDCIDR----FWKVLDEMRSKGYEMEMETCVK 341
RW E GF+ D ++ + ++ ++R FWK+++ G +
Sbjct: 245 RWLNAMVERGFIV-DNATCTLIIDAFCQKGYVNRVVGYFWKMVE----MGLAPNVINFTA 299
Query: 342 VLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLD--MRLFSKVVRVF 399
++ ++ +K+A +L E + KP+V T L+ + + RLF K+VR
Sbjct: 300 LINGLCKQGSIKQAFELLEEMVRRGWKPNVYTHTTLIDGLCKKGWTEKAFRLFLKLVRSD 359
Query: 400 RENGNVLT-DAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGK 458
NV T AM+N K ++ +L M+E G + ++N + + G
Sbjct: 360 GYKPNVHTYTAMINGYCKE----DKLNRAEMLLSRMQEQGLVPNTNTYTTLIDGHCKVGN 415
Query: 459 KDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAID 518
A E MD M G + ++I G C G LD+A K V G G
Sbjct: 416 FVRAYELMDLMGKEGFSPNIYTYNAIIDGLCKKGSLDEAYRLLNK-VSVHGLQADGVTYT 474
Query: 519 LLVNTYCSK---NRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQ-------RGFKD 568
+L++ +C + NR++ N + + P +Y LI Q R F++
Sbjct: 475 ILMSVHCRQADTNRSL----VFFNKMLKVGFTPDIHSYTTLISTFCRQKQMKESERLFEE 530
Query: 569 ALSLLCLMKDHGFPPFVDPFIKYVSKSGTSDDAIAFLKGMTS 610
A+SL + + + + +Y G + A+ + M++
Sbjct: 531 AVSLGLIPTKKTYTSMICGYCRY----GNTSLAVKLFQRMSN 568
Score = 38.9 bits (89), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 40/218 (18%), Positives = 90/218 (41%), Gaps = 17/218 (7%)
Query: 297 VKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAV 356
++ D +Y + SV R+ +R ++M G+ ++ + ++ F + +KE+
Sbjct: 466 LQADGVTYTILMSVHCRQADTNRSLVFFNKMLKVGFTPDIHSYTTLISTFCRQKQMKESE 525
Query: 357 DLYEFAMACKNKPSVNCCTFLLRKIVV--SKQLDMRLFSKVVRVFRENGNVLTDAMLNSV 414
L+E A++ P+ T ++ + L ++LF ++ +G ++
Sbjct: 526 RLFEEAVSLGLIPTKKTYTSMICGYCRYGNTSLAVKLFQRM----SNHGCAPDSITYGAL 581
Query: 415 LKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGS 474
+ L ++ + + AM + G + +A+ A +D +E
Sbjct: 582 ISGLCKESKLDDARNLYDAMMDKGLSPCEVTRLTLAYEYCKKDDSSTAINVLDRLE---- 637
Query: 475 DVGDKMWV----SLIKGHCVAGDLDKAADCFQKMVEKE 508
+ W+ +L++ C G LD AA F K+++KE
Sbjct: 638 ---KRQWIRTVNTLVRKLCSEGKLDMAALFFHKLLDKE 672
>gi|357121994|ref|XP_003562701.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
mitochondrial-like [Brachypodium distachyon]
Length = 726
Score = 59.3 bits (142), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 50/213 (23%), Positives = 89/213 (41%), Gaps = 5/213 (2%)
Query: 396 VRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSS 455
+++ + GN N+V++ G++ E ++ AM++GG + ++ S + L
Sbjct: 269 LQMLCQRGNPCNTYCFNAVIQGFCREGQVQEAIEVFDAMKKGGLVPDTHSYSILVDGLCK 328
Query: 456 AGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGY 515
G + + M +G + SL+ G C AG ++ A + F+++ E++G H
Sbjct: 329 QGDVLTGYDLLVEMARNGIAPTLVSYSSLLHGLCRAGKVELAFELFRRL-EEQGFKHDHI 387
Query: 516 AIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCL 575
+++N C C ++ V ++ P Y LI R DAL + L
Sbjct: 388 VYSIILNGCCQHLNIEVVCDLWNDMV-HHNFVPDAYNYTSLIYAFCRHRNLTDALGVFEL 446
Query: 576 MKDHGFPPFVDPFIKYVSKSGTS---DDAIAFL 605
M D G P V V G D+A FL
Sbjct: 447 MLDSGVSPNVVTCTILVDGFGKERMIDEAFLFL 479
Score = 49.7 bits (117), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 78/384 (20%), Positives = 150/384 (39%), Gaps = 20/384 (5%)
Query: 155 LEKESERLSSKTYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRNKMTEKFEKEG- 213
+E + + ++ TY L + V W + ++ ++G ++ N + + F +EG
Sbjct: 237 MEMKGVKPNAATYGTYLYGLSRTRQVASAWNFLQMLCQRGNPCNTYCFNAVIQGFCREGQ 296
Query: 214 LESDLEKLKGIFATGSIDN--SIEKVASRICK----VVRSDIWGDDVERQLRDLNVTFSN 267
++ +E + G + + S + +CK + D+ + + V++S+
Sbjct: 297 VQEAIEVFDAMKKGGLVPDTHSYSILVDGLCKQGDVLTGYDLLVEMARNGIAPTLVSYSS 356
Query: 268 DLVKFVVDKLGDEPKKALIF--FRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLD 325
++ L K L F FR EE GF KHD Y+ + + + I+ + +
Sbjct: 357 -----LLHGLCRAGKVELAFELFRRLEEQGF-KHDHIVYSIILNGCCQHLNIEVVCDLWN 410
Query: 326 EMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSK 385
+M + + ++ F + +A+ ++E + P+V CT L+ +
Sbjct: 411 DMVHHNFVPDAYNYTSLIYAFCRHRNLTDALGVFELMLDSGVSPNVVTCTILVDGFGKER 470
Query: 386 QLDMR-LFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSN 444
+D LF VR F G V M ++ L V + I M + G++ +
Sbjct: 471 MIDEAFLFLHKVRQF---GIVPNLCMYRVIINGLCKVNKSDHVWGIFADMIKRGYVPDTV 527
Query: 445 MKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKM 504
+ S I A K EA M G+ + SLI G C L + F+ M
Sbjct: 528 VYSIIIDSFVKALKLPEAFRLFHKMLDEGTKPNVFTYTSLINGLCHDDRLPEVVTLFKHM 587
Query: 505 VEKEGTSHAGYAIDLLVNTYCSKN 528
+ EG + L+ YC ++
Sbjct: 588 IW-EGLTPDRILYTSLIVCYCKRS 610
>gi|357505881|ref|XP_003623229.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355498244|gb|AES79447.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 770
Score = 59.3 bits (142), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 57/233 (24%), Positives = 98/233 (42%), Gaps = 6/233 (2%)
Query: 412 NSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEA 471
N+V+ L R+ E ++ K M+ G +S S + G +E ++ ME
Sbjct: 168 NTVINGLCKGKRLVEAKELFKEMKGGECKPNSVTFSALIDGFCKNGDVEEGFGLLEEMEK 227
Query: 472 SGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAI 531
G + ++ +LI G C GD+++ + F +M+ K T + L+N C K +
Sbjct: 228 MGLEGDVFVYSALISGFCSKGDIERGKELFNEMLRKNVTPNV-VTYSCLMNALCKKQKWK 286
Query: 532 DACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPP---FVDPF 588
+A + + + + ++P Y L L DA+ +L LM G P +
Sbjct: 287 EAAQML-DTMTGCKVRPDVVAYTVLADGLSKNGRASDAIKVLDLMVKRGEEPNNVTYNAI 345
Query: 589 IKYVSKSGTSDDAIAFLKGMTSK-RFPSMSVVLCLFAAFFQARRHSEAQDLLS 640
I + K G DDA+ L+ M K + P + L + EA DLL+
Sbjct: 346 INGLCKEGRVDDALGILETMAKKGKKPDVVTYSTLVKGLCGVGKIDEAVDLLN 398
Score = 48.9 bits (115), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 97/483 (20%), Positives = 191/483 (39%), Gaps = 31/483 (6%)
Query: 146 EARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRNKM 205
EA+ F + E + +S T++ ++ +G V+E +GL++ M+K G V + +
Sbjct: 182 EAKELFKEMKGGEC-KPNSVTFSALIDGFCKNGDVEEGFGLLEEMEKMGLEGDVFVYSAL 240
Query: 206 TEKFEKEGLESDLEKLKGIFATGSIDNSIEKVASRIC---KVVRSDIWGDDVERQLRDLN 262
F +G D+E+ K +F N V + C + + W + +
Sbjct: 241 ISGFCSKG---DIERGKELFNEMLRKNVTPNVVTYSCLMNALCKKQKWKEAAQMLDTMTG 297
Query: 263 VTFSNDLVKFVV--------DKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGRE 314
D+V + V + D K + + EE V +YNA+ + L +E
Sbjct: 298 CKVRPDVVAYTVLADGLSKNGRASDAIKVLDLMVKRGEEPNNV-----TYNAIINGLCKE 352
Query: 315 DCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACK--NKPSVN 372
+D +L+ M KG + ++ T ++ + EAVDL M+ + KP V
Sbjct: 353 GRVDDALGILETMAKKGKKPDVVTYSTLVKGLCGVGKIDEAVDLLNLLMSKEFHIKPDVF 412
Query: 373 CCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILK 432
+++++ KQ +R +V E G N ++ +S G++ + ++ K
Sbjct: 413 AFNLVIQELC--KQRRLRHAKRVYYTMVERGFPSNIVTYNILIDGYLSAGKLTKALELWK 470
Query: 433 AMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAG 492
+ G ++ + + L A + ASG+ + +L+ C
Sbjct: 471 DAVDSGISPNAATYTVLINGLCKMQMLSIAKGLFNKKRASGTRPTVSEYNTLMASLCRES 530
Query: 493 DLDKAADCFQKMVEKEGTSHAGYAIDL-LVNTYCSKNRAIDACKFVHNCVREYDLKPWHT 551
+++A + FQ+M +H + ++ K +++ K + + +L P +
Sbjct: 531 SVEQARNLFQEM---RNANHDPDVVSFNIIIDGTLKAGDVESAKELLLEMLNMNLVPDNI 587
Query: 552 TYEELIKNLLVQRGFKDALSLLCLMKDHGFPP---FVDPFIKYVSKSGTSDDAIAFLKGM 608
T+ LI L +A SL M G P D +K S G ++ ++ L+ M
Sbjct: 588 TFSILINRFLKLGQLDEAASLYERMVSCGHVPDAVLFDSLLKGYSLKGKTEKVVSMLQQM 647
Query: 609 TSK 611
K
Sbjct: 648 ADK 650
>gi|226528493|ref|NP_001147073.1| ATP binding protein [Zea mays]
gi|195607078|gb|ACG25369.1| ATP binding protein [Zea mays]
Length = 655
Score = 59.3 bits (142), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 65/295 (22%), Positives = 125/295 (42%), Gaps = 16/295 (5%)
Query: 289 RWAEESGFVKH--------DESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCV 340
RW E + D+ ++N + + +DR ++L++M G ++ T
Sbjct: 347 RWEETEELLAEMFDKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLVHGCMPDVITYT 406
Query: 341 KVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQ-LDMR-LFSKVVRV 398
V+ F + ++ EAV L + AC KP+ T +L+ + +++ +D L S+++
Sbjct: 407 TVINGFCKEGLIDEAVMLLKSMTACGCKPNTISYTIVLKGLCSAERWVDAEDLMSQMI-- 464
Query: 399 FRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGK 458
+ G L N+++ L G + + ++LK M G S + L AGK
Sbjct: 465 --QQGCPLNPITFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGK 522
Query: 459 KDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAID 518
DEA E ++ M G ++ S+ G ++K F + + S A +
Sbjct: 523 TDEALELLNVMVNKGMSPNTIIYSSIASALSREGRINKVIQMFDNIQDTTIRSDA-VLYN 581
Query: 519 LLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLL 573
++++ C + A +F+ V P +TY LI+ L + K+A +L
Sbjct: 582 AVISSLCKRGETERAIEFLAYMVSS-GCVPNESTYTILIRGLASEGFVKEAQEML 635
Score = 49.3 bits (116), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 76/362 (20%), Positives = 146/362 (40%), Gaps = 51/362 (14%)
Query: 322 KVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKI 381
+VL+++ ++G +++ C VL ++ V +A+ L + +P V +L+ +
Sbjct: 178 RVLEDLHARGCALDVGNCNLVLNAICDQGSVDKALHLLRDLPSFGCEPDVVSYNAVLKGL 237
Query: 382 VVSKQLD--MRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGF 439
++K+ L ++VR+ N++T N+++ L G +++L M E G
Sbjct: 238 CMAKRWGCVQELMEEMVRMACPP-NIVT---FNTLISYLCRNGLFERVHEVLAQMAEHGC 293
Query: 440 IASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAAD 499
M + I + G A+E ++ M + G + +L+KG C A ++ +
Sbjct: 294 TPDIRMYATIIDGICKEGHLKVAHEILNRMPSYGLKPNVVCYNTLLKGLCSAERWEETEE 353
Query: 500 CFQKMVEKEGTSHAGYAIDLLVNTYCSK---NRAIDACK--FVHNCVREY---------- 544
+M +K+ ++LV+ +C +R I+ + VH C+ +
Sbjct: 354 LLAEMFDKD-CPLDDVTFNILVDFFCQNGLVDRVIELLEQMLVHGCMPDVITYTTVINGF 412
Query: 545 -------------------DLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFP--P 583
KP +Y ++K L + DA L+ M G P P
Sbjct: 413 CKEGLIDEAVMLLKSMTACGCKPNTISYTIVLKGLCSAERWVDAEDLMSQMIQQGCPLNP 472
Query: 584 FV-DPFIKYVSKSGTSDDAIAFLKGM----TSKRFPSMSVVLCLFAAFFQARRHSEAQDL 638
+ I ++ K G + AI LK M S S S V+ +A + EA +L
Sbjct: 473 ITFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVI---DGLGKAGKTDEALEL 529
Query: 639 LS 640
L+
Sbjct: 530 LN 531
>gi|297806115|ref|XP_002870941.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297316778|gb|EFH47200.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 719
Score = 59.3 bits (142), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 104/466 (22%), Positives = 177/466 (37%), Gaps = 60/466 (12%)
Query: 166 TYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRNKMTEKFEKEGLESDLEKLKGIF 225
TYN ++ GL++E + L+ M KG+ + N + K G E+ K +F
Sbjct: 262 TYNTLISAYSSQGLMEEAFELMHAMPSKGFSPGVYTYNTVINGLCKHG---KYERAKEVF 318
Query: 226 A----TG-SIDNSIEK-VASRICK----VVRSDIWGDDVERQLRDLNVTFSNDLVKFVVD 275
A +G S D++ + + CK V +I+ D R + V FS+ + F
Sbjct: 319 AEMLRSGLSPDSTTYRSLLMEACKKGDAVETENIFSDMRSRDVVPDLVCFSSMMSLFTRS 378
Query: 276 KLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEME 335
D KAL++F +E+G + D Y + R+ I + +EM +G M+
Sbjct: 379 GNLD---KALMYFNSVKEAGLIP-DNVIYTILIQGYCRKGMISEAMNLRNEMLQQGCAMD 434
Query: 336 METCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRK--IVVSKQLDMRLFS 393
+ T +L +R M+ EA L+ P T L+ + + Q M LF
Sbjct: 435 VVTYNTILHGLCKRKMLGEADKLFNEMTERGLFPDSYTLTILIDGHCKLGNLQNAMELFK 494
Query: 394 KVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRL 453
K+ +E L N++L VG + +I M + + S + L
Sbjct: 495 KM----KEKRIKLDVVTYNTLLDGFGKVGDIDTAKEIWADMVSKEILPTPISFSILVNAL 550
Query: 454 SSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAG--------------------- 492
S G EA D M + + S+IKG+C +G
Sbjct: 551 CSKGHLSEAFRVWDEMISKSIKPTVMICNSMIKGYCRSGNASDGEIFLEKMISEGFVPDC 610
Query: 493 --------------DLDKAADCFQKMVEKEGTSHAG-YAIDLLVNTYCSKNRAIDACKFV 537
++ KA +KM EK+G + + +++ +C +N+ +A +
Sbjct: 611 ISYNTLIYGFVKEENMSKAFGLVKKMEEKQGGLVPDVFTYNSILHGFCRENQMKEAEAVL 670
Query: 538 HNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPP 583
+ E + P +TY LI + Q +A M GF P
Sbjct: 671 RKMI-ERGVNPDRSTYTSLINGFVSQDNLTEAFRFHDEMLQRGFSP 715
Score = 49.7 bits (117), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 57/268 (21%), Positives = 102/268 (38%), Gaps = 20/268 (7%)
Query: 321 WKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRK 380
++ +RSKGY + ++ C ++G V+ A +Y+ ++ VN T +
Sbjct: 175 YEAFTLLRSKGYTVSIDACNALIGSLVRIGWVELAWRIYQ--EISRSGVGVNVYTLNIMV 232
Query: 381 IVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFI 440
+ K M + +E G N+++ A S G M E +++ AM GF
Sbjct: 233 NALCKDGKMEKVGTFLSEVQEKGVYPDIVTYNTLISAYSSQGLMEEAFELMHAMPSKGFS 292
Query: 441 ASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADC 500
+ + L GK + A E M SG + SL+ C GD + +
Sbjct: 293 PGVYTYNTVINGLCKHGKYERAKEVFAEMLRSGLSPDSTTYRSLLMEACKKGDAVETENI 352
Query: 501 FQKMVEKEGTSHAGYAIDLLVNTYC--------SKNRAIDACKFVHNCVREYDLKPWHTT 552
F M + D++ + C +++ +D N V+E L P +
Sbjct: 353 FSDMRSR----------DVVPDLVCFSSMMSLFTRSGNLDKALMYFNSVKEAGLIPDNVI 402
Query: 553 YEELIKNLLVQRGFKDALSLLCLMKDHG 580
Y LI+ + +A++L M G
Sbjct: 403 YTILIQGYCRKGMISEAMNLRNEMLQQG 430
Score = 49.3 bits (116), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 99/476 (20%), Positives = 171/476 (35%), Gaps = 56/476 (11%)
Query: 178 GLVQEFWGLVDVMKKKGYGVASHVRNKMTEKFEKEGLESDLEKLKGIFATGSIDNSIEKV 237
G V+ W + + + G GV + N M K+G +EKV
Sbjct: 204 GWVELAWRIYQEISRSGVGVNVYTLNIMVNALCKDG-------------------KMEKV 244
Query: 238 ASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFV 297
+ + +V ++ D V T++ + + L +E A GF
Sbjct: 245 GTFLSEVQEKGVYPDIV---------TYNTLISAYSSQGLMEE---AFELMHAMPSKGF- 291
Query: 298 KHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVD 357
+YN + + L + +R +V EM G + T +L ++ E +
Sbjct: 292 SPGVYTYNTVINGLCKHGKYERAKEVFAEMLRSGLSPDSTTYRSLLMEACKKGDAVETEN 351
Query: 358 LYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRL--FSKVVRVFRENGNVLTDAMLNSVL 415
++ + P + C + ++ S LD L F+ V +E G + + + ++
Sbjct: 352 IFSDMRSRDVVPDLVCFSSMMSLFTRSGNLDKALMYFNSV----KEAGLIPDNVIYTILI 407
Query: 416 KALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSD 475
+ G + E + M + G + I L EA++ + M G
Sbjct: 408 QGYCRKGMISEAMNLRNEMLQQGCAMDVVTYNTILHGLCKRKMLGEADKLFNEMTERGLF 467
Query: 476 VGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCS------KNR 529
LI GHC G+L A + F+KM EK I L V TY + K
Sbjct: 468 PDSYTLTILIDGHCKLGNLQNAMELFKKMKEKR--------IKLDVVTYNTLLDGFGKVG 519
Query: 530 AIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFV---D 586
ID K + + ++ P ++ L+ L + +A + M P V +
Sbjct: 520 DIDTAKEIWADMVSKEILPTPISFSILVNALCSKGHLSEAFRVWDEMISKSIKPTVMICN 579
Query: 587 PFIKYVSKSGTSDDAIAFLKGMTSKRF-PSMSVVLCLFAAFFQARRHSEAQDLLSK 641
IK +SG + D FL+ M S+ F P L F + S+A L+ K
Sbjct: 580 SMIKGYCRSGNASDGEIFLEKMISEGFVPDCISYNTLIYGFVKEENMSKAFGLVKK 635
Score = 48.1 bits (113), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 51/240 (21%), Positives = 100/240 (41%), Gaps = 8/240 (3%)
Query: 346 FSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSK--QLDMRLFSKVVRVFRENG 403
F + ++EA + + + S++ C L+ +V +L R++ ++ R +G
Sbjct: 165 FVQARKLREAYEAFTLLRSKGYTVSIDACNALIGSLVRIGWVELAWRIYQEISR----SG 220
Query: 404 NVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEAN 463
+ LN ++ AL G+M + L ++E G + + SS G +EA
Sbjct: 221 VGVNVYTLNIMVNALCKDGKMEKVGTFLSEVQEKGVYPDIVTYNTLISAYSSQGLMEEAF 280
Query: 464 EFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNT 523
E M M + G G + ++I G C G ++A + F +M+ + G S L+
Sbjct: 281 ELMHAMPSKGFSPGVYTYNTVINGLCKHGKYERAKEVFAEML-RSGLSPDSTTYRSLLME 339
Query: 524 YCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPP 583
C K A++ + + + +R D+ P + ++ AL +K+ G P
Sbjct: 340 ACKKGDAVET-ENIFSDMRSRDVVPDLVCFSSMMSLFTRSGNLDKALMYFNSVKEAGLIP 398
>gi|242063942|ref|XP_002453260.1| hypothetical protein SORBIDRAFT_04g002660 [Sorghum bicolor]
gi|241933091|gb|EES06236.1| hypothetical protein SORBIDRAFT_04g002660 [Sorghum bicolor]
Length = 866
Score = 59.3 bits (142), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 89/359 (24%), Positives = 136/359 (37%), Gaps = 32/359 (8%)
Query: 293 ESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMV 352
+ G + D+ +++ M S +D ++D MR G+ +E+ + L V
Sbjct: 273 QHGLPRPDQVTFDVMLSGFCDAGFVDEARVLVDIMRCGGFLRRVESYNRWLSGLVRNGRV 332
Query: 353 KEAVDLYEFAMACKNKPSVNCCTFLLRKIVVS------KQLDMRLFSKVVRVFRENGNVL 406
EA +L +P N T+ I+VS K D R +R + +V+
Sbjct: 333 GEAQELLREMAHEGIQP--NSYTY---NIIVSGLCKEGKAFDARRVENFIRSGVMSPDVV 387
Query: 407 TDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFM 466
T S+L A S G + N+IL M + G +S + + L AG+ EA +
Sbjct: 388 T---YTSLLHAYCSKGNIAAANRILDEMAQKGCAPNSFTYNVLLQSLWRAGRTTEAERLL 444
Query: 467 DHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCS 526
+ M G + +I G C LD A D M E EG+ A+ L N++ S
Sbjct: 445 ERMNEKGYSLDTAGCNIIIDGLCRNSRLDVAMDIVDGMWE-EGSG----ALGRLGNSFLS 499
Query: 527 KNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPP--- 583
+ C+ P TY LI L + F +A L M P
Sbjct: 500 ---VVSDSSISQRCL------PDQITYSILISALCKEGRFDEAKKKLLEMIVKDISPDSV 550
Query: 584 FVDPFIKYVSKSGTSDDAIAFLKGMTSKRF-PSMSVVLCLFAAFFQARRHSEAQDLLSK 641
D FI K G + AI L+ M K PS L F + + E L+S+
Sbjct: 551 IYDTFIHGYCKHGKTSLAIKVLRDMEKKGCNPSTRTYNLLIRGFEEKHKSEEIMKLMSE 609
Score = 43.1 bits (100), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 49/227 (21%), Positives = 91/227 (40%), Gaps = 9/227 (3%)
Query: 394 KVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEG---GFIASSNMKSKIA 450
++V R G N+ + AL GR+ + +I + M+E G + +
Sbjct: 228 RLVERMRVQGLAPNVVTFNARISALCKAGRVLDAYRIFQDMQEDWQHGLPRPDQVTFDVM 287
Query: 451 FR-LSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEG 509
AG DEA +D M G + + + G G + +A + ++M EG
Sbjct: 288 LSGFCDAGFVDEARVLVDIMRCGGFLRRVESYNRWLSGLVRNGRVGEAQELLREMAH-EG 346
Query: 510 TSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDA 569
Y +++V+ C + +A DA + V N +R + P TY L+ + A
Sbjct: 347 IQPNSYTYNIIVSGLCKEGKAFDA-RRVENFIRSGVMSPDVVTYTSLLHAYCSKGNIAAA 405
Query: 570 LSLLCLMKDHGFPP---FVDPFIKYVSKSGTSDDAIAFLKGMTSKRF 613
+L M G P + ++ + ++G + +A L+ M K +
Sbjct: 406 NRILDEMAQKGCAPNSFTYNVLLQSLWRAGRTTEAERLLERMNEKGY 452
Score = 42.4 bits (98), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 78/402 (19%), Positives = 152/402 (37%), Gaps = 61/402 (15%)
Query: 166 TYNLMLRIVGVHGLVQEFWGLVDVMKKKGY---------GVASHVRN-------KMTEKF 209
T+++ML G V E LVD+M+ G+ ++ VRN ++ +
Sbjct: 283 TFDVMLSGFCDAGFVDEARVLVDIMRCGGFLRRVESYNRWLSGLVRNGRVGEAQELLREM 342
Query: 210 EKEGLESDLEKLKGIFATGSIDNSIEKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDL 269
EG++ + I +G A R+ +RS + DV VT+++ L
Sbjct: 343 AHEGIQPN-SYTYNIIVSGLCKEGKAFDARRVENFIRSGVMSPDV--------VTYTSLL 393
Query: 270 VKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRS 329
+ G+ I A++ + +YN + L R ++L+ M
Sbjct: 394 HAYCSK--GNIAAANRILDEMAQKG--CAPNSFTYNVLLQSLWRAGRTTEAERLLERMNE 449
Query: 330 KGYEMEMETCVKVLGRFSERNMVKEAVDLYE-----------------FAMACKNKPSVN 372
KGY ++ C ++ + + A+D+ + ++ + S
Sbjct: 450 KGYSLDTAGCNIIIDGLCRNSRLDVAMDIVDGMWEEGSGALGRLGNSFLSVVSDSSISQR 509
Query: 373 CC------TFLLRKIVVSKQLD---MRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGR 423
C + L+ + + D +L +V+ + +V+ D ++ K G+
Sbjct: 510 CLPDQITYSILISALCKEGRFDEAKKKLLEMIVKDISPD-SVIYDTFIHGYCKH----GK 564
Query: 424 MGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVS 483
K+L+ ME+ G S+ + + K +E + M M+ G + S
Sbjct: 565 TSLAIKVLRDMEKKGCNPSTRTYNLLIRGFEEKHKSEEIMKLMSEMKEKGISPNVMTYNS 624
Query: 484 LIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYC 525
LIK C G ++KA +M++ E + + DLL+ YC
Sbjct: 625 LIKSFCQQGMVNKAMPLLDEMLQNELVPNI-TSFDLLIKAYC 665
Score = 39.7 bits (91), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 62/307 (20%), Positives = 125/307 (40%), Gaps = 40/307 (13%)
Query: 294 SGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKG-------YEMEMETCVKVLGRF 346
SG + D +Y ++ + I ++LDEM KG Y + +++ + GR
Sbjct: 379 SGVMSPDVVTYTSLLHAYCSKGNIAAANRILDEMAQKGCAPNSFTYNVLLQSLWRA-GRT 437
Query: 347 SERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVL 406
+E + E ++ +++ C ++ + + +LD+ + +V E G+
Sbjct: 438 TEAERLLERMNEKGYSLDTAG------CNIIIDGLCRNSRLDVAM--DIVDGMWEEGSG- 488
Query: 407 TDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFR-----LSSAGKKDE 461
++GR+G N L + + I+ + +I + L G+ DE
Sbjct: 489 -------------ALGRLG--NSFLSVVSDSS-ISQRCLPDQITYSILISALCKEGRFDE 532
Query: 462 ANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLV 521
A + + M ++ + I G+C G A + M EK+G + + +LL+
Sbjct: 533 AKKKLLEMIVKDISPDSVIYDTFIHGYCKHGKTSLAIKVLRDM-EKKGCNPSTRTYNLLI 591
Query: 522 NTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGF 581
+ K+++ + K + ++E + P TY LIK+ Q A+ LL M +
Sbjct: 592 RGFEEKHKSEEIMKLMSE-MKEKGISPNVMTYNSLIKSFCQQGMVNKAMPLLDEMLQNEL 650
Query: 582 PPFVDPF 588
P + F
Sbjct: 651 VPNITSF 657
>gi|242058841|ref|XP_002458566.1| hypothetical protein SORBIDRAFT_03g035845 [Sorghum bicolor]
gi|241930541|gb|EES03686.1| hypothetical protein SORBIDRAFT_03g035845 [Sorghum bicolor]
Length = 796
Score = 59.3 bits (142), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 102/530 (19%), Positives = 207/530 (39%), Gaps = 60/530 (11%)
Query: 145 DEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRNK 204
D AR+ F + + ++ TY M++ + G + + ++ +++ G N
Sbjct: 192 DVARKVFGEMRDGKTVAPDVHTYTAMIKALCRAGEIDAAFAMLAELRRSGIQPTVVTYNV 251
Query: 205 MTEKFEKEGLESDLEKLKGIFATGSIDNSIEKVASRICKVVRSDIWGD--DVERQLRDLN 262
+ + K G + +LKG G + SI I + R +G+ V ++++
Sbjct: 252 LMDALCKSGRVEEAFRLKGRMVEGRVRPSIVTFGILISGLARGQQFGEVGAVLQEMQGFG 311
Query: 263 VT----FSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCID 318
+T N+++ + K +AL F G +K +YN +A L +E ++
Sbjct: 312 ITPNEVIYNEMIGWHCRK--GHCSEALKLFDEMVSKG-IKQTVVTYNLIAKALCKEGEME 368
Query: 319 RFWKVLDEMRSKG---------------------YEMEMETCVKVLGRFSERNMVKEAVD 357
K+LDEM G ++ + ++L RF + N
Sbjct: 369 HAEKILDEMLLAGMMVHCSLFNSVVAWHLRGTGRLDLVLRLIREMLARFLKPNDALMTAC 428
Query: 358 LYEFAMACKNKPSVNCCTFLLRK-----IVVSKQL--------DMRLFSKVVRVFRENGN 404
+ E + K++ + +L K + S L +M+ +KV++ +G
Sbjct: 429 IQELCKSGKHEEAAEIWFQVLGKGLGVNVATSNALIHGLCQGNNMKEATKVLKAMVNSGV 488
Query: 405 VLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANE 464
L N +++ +M E ++ M + GF + + GK +E
Sbjct: 489 ELDRITYNIMIQGCCKASKMDEAIQLRDDMIKRGFKPDLFTFNIFLHTYCNLGKVEEILH 548
Query: 465 FMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTY 524
+D M++ G + ++I G+C A D+ KA + +++ K G + L+ Y
Sbjct: 549 LLDQMKSEGLKPDIVTYGTIIDGYCKAKDMHKANEYLTELM-KNGLRPNAVIYNALIGGY 607
Query: 525 CSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLL---CLMKD--- 578
+N I + + ++ ++P TY L+ + G + + + C++KD
Sbjct: 608 -GRNGNISDAIGILDTMKYNGIQPTPVTYNSLMY-WMCHAGLVEEVKAVFAQCIVKDIEL 665
Query: 579 --HGFPPFVDPFIKYVSKSGTSDDAIAFLKGMTSKRFPS--MSVVLCLFA 624
G+ + F K G D+A+ + K M S+ P M+ +FA
Sbjct: 666 GVIGYTIIIQGFCKI----GKIDEAVMYFKEMHSRGIPPNKMTYTTLMFA 711
Score = 40.8 bits (94), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 28/124 (22%), Positives = 57/124 (45%), Gaps = 5/124 (4%)
Query: 414 VLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASG 473
+++ +G++ E K M G + + + F S +G K+EA++ D M + G
Sbjct: 673 IIQGFCKIGKIDEAVMYFKEMHSRGIPPNKMTYTTLMFAYSKSGNKEEASKLFDEMVSLG 732
Query: 474 SDVGDKMWVSLIKGHCVAGDLDK----AADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNR 529
+ +LI G C LDK A+ ++++++G S+ + +D + +C K
Sbjct: 733 IVPDSVSYNTLISGFCEVDSLDKMVESPAEMSSQVLKQDGCSYNAF-VDGITTPWCQKEA 791
Query: 530 AIDA 533
+A
Sbjct: 792 VSNA 795
>gi|255556189|ref|XP_002519129.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223541792|gb|EEF43340.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 643
Score = 59.3 bits (142), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 57/237 (24%), Positives = 95/237 (40%), Gaps = 6/237 (2%)
Query: 412 NSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEA 471
N ++ L G++ + + +ME G + + + S G+ + A +D M+
Sbjct: 240 NIMINVLCKEGKLKKAKDFIGSMENLGVKPNVVTYNTVIHGYCSRGRVEGARMVLDIMKN 299
Query: 472 SGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAI 531
G + + SLI G C G L++A+ +KM E G + L++ YC+K +
Sbjct: 300 RGVEPDSYTYGSLISGMCKGGKLEEASGILEKMKEI-GLLPTAVTYNTLIDGYCNKGDLV 358
Query: 532 DACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPP---FVDPF 588
A + VR L P +TY LI L ++ +A ++ M D G P +
Sbjct: 359 KAFGYRDEMVRRAIL-PTVSTYNLLIHALFLEGKMDEADGMIKDMGDSGIVPDSITYNIL 417
Query: 589 IKYVSKSGTSDDAIAFLKGMTSKRF-PSMSVVLCLFAAFFQARRHSEAQDLLSKCPR 644
I + G + A M SK P++ L + R A DL K R
Sbjct: 418 INGYCRCGNAKKAFNLHDEMISKGIQPTLVTYTSLIYVLSKRNRMKAADDLFEKIIR 474
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 92/396 (23%), Positives = 173/396 (43%), Gaps = 17/396 (4%)
Query: 120 QLELSGVVFTHEMVLKVLKNLESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGL 179
+L++ V+T +++ VL E +A+ F +E + + TYN ++ G
Sbjct: 229 RLKIKSTVYTFNIMINVLCK-EGKLKKAKDFIGS-MENLGVKPNVVTYNTVIHGYCSRGR 286
Query: 180 VQEFWGLVDVMKKKGYGVASHVRNKMTEKFEKEG-LESD---LEKLK--GIFATGSIDNS 233
V+ ++D+MK +G S+ + K G LE LEK+K G+ T N+
Sbjct: 287 VEGARMVLDIMKNRGVEPDSYTYGSLISGMCKGGKLEEASGILEKMKEIGLLPTAVTYNT 346
Query: 234 IEKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVK--FVVDKLGDEPKKALIFFRWA 291
+ +V++ + D++ R+ V+ N L+ F+ K+ DE +
Sbjct: 347 LIDGYCNKGDLVKAFGYRDEMVRRAILPTVSTYNLLIHALFLEGKM-DEADG---MIKDM 402
Query: 292 EESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNM 351
+SG V D +YN + + R + + + DEM SKG + + T ++ S+RN
Sbjct: 403 GDSGIVP-DSITYNILINGYCRCGNAKKAFNLHDEMISKGIQPTLVTYTSLIYVLSKRNR 461
Query: 352 VKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAML 411
+K A DL+E + P + L+ + LD R F+ + + + N V +
Sbjct: 462 MKAADDLFEKIIREGASPDLIMFNALIDGHCANGNLD-RAFALLKEMDKRN-IVPDEVTY 519
Query: 412 NSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEA 471
N++++ G++ E ++LK M+ G + + S G ++A D M +
Sbjct: 520 NTLMQGRCREGKVEEARELLKEMKRRGIRPDHISYNTLISGYSKRGDINDAFTIRDEMLS 579
Query: 472 SGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEK 507
G + + +LI+G C D A + ++MV K
Sbjct: 580 IGFNPTLLTYNALIQGLCKNQQGDLAEELLKEMVSK 615
Score = 52.4 bits (124), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 87/401 (21%), Positives = 150/401 (37%), Gaps = 56/401 (13%)
Query: 282 KKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVK 341
KKA F E G VK + +YN + ++ VLD M+++G E + T
Sbjct: 253 KKAKDFIGSMENLG-VKPNVVTYNTVIHGYCSRGRVEGARMVLDIMKNRGVEPDSYTYGS 311
Query: 342 VLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRE 401
++ + ++EA + E P+ L+ L V+ F
Sbjct: 312 LISGMCKGGKLEEASGILEKMKEIGLLPTAVTYNTLIDGYCNKGDL--------VKAFGY 363
Query: 402 NGNVLTDAML------NSVLKALISVGRMGECNKILKAMEEGGFIASS------------ 443
++ A+L N ++ AL G+M E + ++K M + G + S
Sbjct: 364 RDEMVRRAILPTVSTYNLLIHALFLEGKMDEADGMIKDMGDSGIVPDSITYNILINGYCR 423
Query: 444 ------------NMKSK-----------IAFRLSSAGKKDEANEFMDHMEASGSDVGDKM 480
M SK + + LS + A++ + + G+ M
Sbjct: 424 CGNAKKAFNLHDEMISKGIQPTLVTYTSLIYVLSKRNRMKAADDLFEKIIREGASPDLIM 483
Query: 481 WVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNC 540
+ +LI GHC G+LD+A ++M +K + L+ C + + +A + +
Sbjct: 484 FNALIDGHCANGNLDRAFALLKEM-DKRNIVPDEVTYNTLMQGRCREGKVEEARELLKEM 542
Query: 541 VREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFV---DPFIKYVSKSGT 597
R ++P H +Y LI + DA ++ M GF P + + I+ + K+
Sbjct: 543 KRR-GIRPDHISYNTLISGYSKRGDINDAFTIRDEMLSIGFNPTLLTYNALIQGLCKNQQ 601
Query: 598 SDDAIAFLKGMTSKRF-PSMSVVLCLFAAFFQARRHSEAQD 637
D A LK M SK P S L + SEA D
Sbjct: 602 GDLAEELLKEMVSKGITPDDSTYFSLIEGIGKVDDSSEASD 642
>gi|449531231|ref|XP_004172591.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g32630-like, partial [Cucumis sativus]
Length = 602
Score = 59.3 bits (142), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 80/363 (22%), Positives = 147/363 (40%), Gaps = 54/363 (14%)
Query: 318 DRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFL 377
D +V D R KG+E++ +C +EF +A K ++ C
Sbjct: 135 DSSLEVFDYARKKGFEIDERSC-------------------FEFLLALKRSGNMELCVEF 175
Query: 378 LRKIVVSKQLDMRL--FSKVVRVFRENGNV-----LTDAML-----------NSVLKALI 419
LR++V S +++R+ ++ VV + G V L D ++ N++L I
Sbjct: 176 LRQMVDSG-IEIRVCSWTAVVDGLCKKGEVVRAKALMDELVCKGFKPSVITYNTLLNGYI 234
Query: 420 SVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDK 479
+ +G N+IL ME+ + + + S + K +EA + D M G +
Sbjct: 235 EIKDVGGVNEILSLMEKNVVDYNVTTYTMLIEWYSRSSKIEEAEKLFDEMLKKGIEPDVY 294
Query: 480 MWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHN 539
++ S+I +C G++ +A F +M E+ +A Y L+N C K + A + + N
Sbjct: 295 IYTSIINWNCKFGNMKRAFVLFDEMTERRLVPNA-YTYGALINGAC-KAGEMKAAEMMVN 352
Query: 540 CVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPFIKYVSKSG--- 596
++ + + L+ + +AL L +M+ GF +D F + SG
Sbjct: 353 DMQSKGVDVNRVIFNTLMDGYCKKGMIDEALRLQNIMQQKGFE--IDAFTCNIIASGFCR 410
Query: 597 --TSDDAIAFLKGMTSK-------RFPSMSVVLCLFAAFFQARRHSEAQDLLSKCPRYVR 647
++A L M + F + + C F +ARR + + K P V
Sbjct: 411 SNRREEAKRLLLTMEERGVAPNVVSFSILIDIYCKEQNFAEARRLFKVMEKKGKAPSVVT 470
Query: 648 NHA 650
+A
Sbjct: 471 YNA 473
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 69/322 (21%), Positives = 129/322 (40%), Gaps = 7/322 (2%)
Query: 293 ESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMV 352
E V ++ ++Y + R I+ K+ DEM KG E ++ ++ + +
Sbjct: 250 EKNVVDYNVTTYTMLIEWYSRSSKIEEAEKLFDEMLKKGIEPDVYIYTSIINWNCKFGNM 309
Query: 353 KEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLN 412
K A L++ + P+ L+ K +M+ +V + G + + N
Sbjct: 310 KRAFVLFDEMTERRLVPNAYTYGALING--ACKAGEMKAAEMMVNDMQSKGVDVNRVIFN 367
Query: 413 SVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEAS 472
+++ G + E ++ M++ GF + + IA + +++EA + ME
Sbjct: 368 TLMDGYCKKGMIDEALRLQNIMQQKGFEIDAFTCNIIASGFCRSNRREEAKRLLLTMEER 427
Query: 473 GSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAID 532
G + LI +C + +A F K++EK+G + + + + YC K + +
Sbjct: 428 GVAPNVVSFSILIDIYCKEQNFAEARRLF-KVMEKKGKAPSVVTYNAFIERYCKKGKMEE 486
Query: 533 ACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPF---I 589
A K + N ++E L P TY LI AL L M G V + I
Sbjct: 487 AYKLI-NEMQERGLMPDTYTYTSLIDGERASGNVDRALELFNEMPQLGLNRNVVTYTVII 545
Query: 590 KYVSKSGTSDDAIAFLKGMTSK 611
+SK G +D+A M +
Sbjct: 546 SGLSKDGRADEAFKLYDEMNKE 567
Score = 45.1 bits (105), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 43/206 (20%), Positives = 87/206 (42%), Gaps = 3/206 (1%)
Query: 304 YNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAM 363
+N + ++ ID ++ + M+ KG+E++ TC + F N +EA L
Sbjct: 366 FNTLMDGYCKKGMIDEALRLQNIMQQKGFEIDAFTCNIIASGFCRSNRREEAKRLLLTME 425
Query: 364 ACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGR 423
P+V + L+ + K+ + ++ +V + G + N+ ++ G+
Sbjct: 426 ERGVAPNVVSFSILID--IYCKEQNFAEARRLFKVMEKKGKAPSVVTYNAFIERYCKKGK 483
Query: 424 MGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVS 483
M E K++ M+E G + + + + ++G D A E + M G + +
Sbjct: 484 MEEAYKLINEMQERGLMPDTYTYTSLIDGERASGNVDRALELFNEMPQLGLNRNVVTYTV 543
Query: 484 LIKGHCVAGDLDKAADCFQKMVEKEG 509
+I G G D+A + +M KEG
Sbjct: 544 IISGLSKDGRADEAFKLYDEM-NKEG 568
Score = 41.2 bits (95), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 59/136 (43%), Gaps = 2/136 (1%)
Query: 425 GECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSL 484
E ++ K ME+ G S + R GK +EA + ++ M+ G + SL
Sbjct: 450 AEARRLFKVMEKKGKAPSVVTYNAFIERYCKKGKMEEAYKLINEMQERGLMPDTYTYTSL 509
Query: 485 IKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREY 544
I G +G++D+A + F +M + G + ++++ RA +A K +E
Sbjct: 510 IDGERASGNVDRALELFNEM-PQLGLNRNVVTYTVIISGLSKDGRADEAFKLYDEMNKE- 567
Query: 545 DLKPWHTTYEELIKNL 560
+ P Y LI +L
Sbjct: 568 GIVPDDGIYSSLIASL 583
>gi|326520353|dbj|BAK07435.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 652
Score = 59.3 bits (142), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 80/350 (22%), Positives = 142/350 (40%), Gaps = 46/350 (13%)
Query: 167 YNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRNKMTEKFEKEGLESDLEKLKGIFA 226
YNL+LR G ++ GL+ M+ +G + F L + L +
Sbjct: 122 YNLLLRAASRAGQLRLASGLLLEMRARGVA---------ADGFSYSTLLAALTR------ 166
Query: 227 TGSIDNSIEKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALI 286
G +D+++ ++ +D D+ V FSN L+ + + GD PK +
Sbjct: 167 AGHLDHALT-----FLPLMEADAVAPDL--------VLFSN-LIHLAL-RAGDAPKALAL 211
Query: 287 FFRWAEESGFVKHDESSYNAMASVLGREDCI-DRFWKVLDEMRSKGYEMEMETCVKVLGR 345
F R + ++ D +YNA + + D + D +L ++ + G + E+ VL
Sbjct: 212 FSRL--RAAGIRPDLKAYNAAIAAYCKSDLLRDAKRLLLHDVPADGVAPDAESYAPVLAA 269
Query: 346 FSERNMVKEAVDLYEFAMA-CKNKPSVNCCTFLLRKIVVSKQLDM-RLFSKVVRVFRENG 403
+ R AV L+ A + KP ++ +L QLD+ R ++ R G
Sbjct: 270 LARRGRHLAAVSLFSHMRAVARVKPDLSVFNIVLNAY---GQLDLARDADRLFWSMRRAG 326
Query: 404 NVLTDAMLNSVLKALISVGRMGECNKILKAM----EEGGFIASSNM---KSKIAFRLSSA 456
+ N++L+ G GE + M +GG + N+ + IA A
Sbjct: 327 VPPSVVTYNTMLRVYGDAGLFGEAVHLFGLMYSTASDGGTVVRPNVVTYNTMIAIH-GKA 385
Query: 457 GKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVE 506
+ D+A + M+ASG + +++ AG LD+AA F K+ E
Sbjct: 386 LEDDKAGSLVQQMQASGIQPNAVTYSTVLSIWVKAGKLDRAAKLFDKLRE 435
>gi|242039913|ref|XP_002467351.1| hypothetical protein SORBIDRAFT_01g026260 [Sorghum bicolor]
gi|241921205|gb|EER94349.1| hypothetical protein SORBIDRAFT_01g026260 [Sorghum bicolor]
Length = 846
Score = 59.3 bits (142), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 99/485 (20%), Positives = 195/485 (40%), Gaps = 28/485 (5%)
Query: 83 PMICSYSSEPAMEQKESDFTVVSDIFYKFSDVNDISKQLELSGVVFTHEMVLKVLKNLES 142
P +CSY+ + + F D F F +++ + V T+ +++ VL + E
Sbjct: 252 PNVCSYN---ILIKGHCVFGWSRDAFKLFEEMHRSGCE----PTVVTYNILVDVLCH-EG 303
Query: 143 SPDEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVR 202
EARR F+ + + + ++ T+N+++ G + + MK +G S
Sbjct: 304 RMPEARRLFD-EMAQVGIQANTITFNVLIDGYAKTGRMDQACAAYREMKARGLVPDSCTF 362
Query: 203 NKMTEKFEKEGLESDLEKLKGIFATGSIDNSIEKVASRICKVVR-SDIWG--DDVERQLR 259
N + K G + L +F + + + ++ + R+C R D W Q
Sbjct: 363 NIIAAGAYKFGHAAQLVHDHDMFGSHMLADGMDMLVCRLCWDCRLDDAWELLRGAIEQGA 422
Query: 260 DLNVTFSNDLVK-FVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCID 318
L+VT N L+ + + L +E A +R + G S++N + L + +D
Sbjct: 423 PLSVTGFNALIAAYSKEGLHEE---AFELYRIMNKLGLAP-SSSTFNYLIMGLCNQGRLD 478
Query: 319 RFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLL 378
+L+ M SKGY + + + F E N V A+ ++ +P F+
Sbjct: 479 EAQLLLEHMVSKGYCLSTSFTICLDASFREGNAVC-ALKCWDDMGKLGLQPD-----FIA 532
Query: 379 RKIVVSKQLDMRLFSKVVRVFRE---NGNVLTDAMLNSVLKALISVGRMGECNKILKAME 435
++ + ++ + F E G V + NS++ AL G M E K+ + M
Sbjct: 533 FSAYINGLCRLDYVNEAYQAFAEMTARGIVPNNFTYNSIISALCRAGNMTEALKLQQNMR 592
Query: 436 EGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLD 495
+ G + + + L GK + + + M ++G + ++I +C A D++
Sbjct: 593 QNGLVPDIYTSNILIDGLCREGKLEMVDNLLLDMCSNGLTPDTVTYNTIINAYCRAKDMN 652
Query: 496 KAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEE 555
A + KM+ G + ++ +++ CS + A K + V P TY
Sbjct: 653 SAMNFMNKML-AAGCEPDIFTYNIWMHSLCSNHMLNQAGKVLDELV-AMGCPPDSVTYNT 710
Query: 556 LIKNL 560
L+ +
Sbjct: 711 LMDGI 715
Score = 47.0 bits (110), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 75/320 (23%), Positives = 125/320 (39%), Gaps = 31/320 (9%)
Query: 321 WKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRK 380
W V +EM ++G + T ++ F R +V+ A L P+V C++
Sbjct: 204 WNVFEEMAARGPRPSLATFNAMILGFCHRGLVRVASGLLGIMGEFGIVPNV--CSY---N 258
Query: 381 IVVSKQLDMRLFSKVVRVFRE---NGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEG 437
I++ ++F E +G T N ++ L GRM E ++ M +
Sbjct: 259 ILIKGHCVFGWSRDAFKLFEEMHRSGCEPTVVTYNILVDVLCHEGRMPEARRLFDEMAQV 318
Query: 438 GFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIK------GHCVA 491
G A++ + + + G+ D+A M+A G V D ++I GH A
Sbjct: 319 GIQANTITFNVLIDGYAKTGRMDQACAAYREMKARGL-VPDSCTFNIIAAGAYKFGH--A 375
Query: 492 GDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHT 551
L D F + +G +D+LV C R DA + + + + P
Sbjct: 376 AQLVHDHDMFGSHMLADG-------MDMLVCRLCWDCRLDDAWELLRGAIEQG--APLSV 426
Query: 552 T-YEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPF---IKYVSKSGTSDDAIAFLKG 607
T + LI + ++A L +M G P F I + G D+A L+
Sbjct: 427 TGFNALIAAYSKEGLHEEAFELYRIMNKLGLAPSSSTFNYLIMGLCNQGRLDEAQLLLEH 486
Query: 608 MTSKRFP-SMSVVLCLFAAF 626
M SK + S S +CL A+F
Sbjct: 487 MVSKGYCLSTSFTICLDASF 506
>gi|297809453|ref|XP_002872610.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297318447|gb|EFH48869.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 575
Score = 59.3 bits (142), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 67/301 (22%), Positives = 123/301 (40%), Gaps = 6/301 (1%)
Query: 303 SYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFA 362
+YN + + L ++ +KV DEMR +G + T ++G EA + +
Sbjct: 270 TYNCVMNQLCKDGRTKDAFKVFDEMRERGVSCNIVTYNTLIGGLCREMKANEANKVMDQM 329
Query: 363 MACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVG 422
+ P++ L+ +L L + R + G + N ++ G
Sbjct: 330 KSYVINPNLITYNTLIDGFCSVGKLGKAL--SLCRDLKSRGLSPSLVTYNVLVSGFCRKG 387
Query: 423 RMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWV 482
K++K MEE G S + + + + + A + ME G +
Sbjct: 388 DTSGAAKMVKEMEERGIKPSKVTYTILIDTFARSDNMETAIQLRSSMEELGLVPDVHTYS 447
Query: 483 SLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVR 542
LI G C+ G +++A+ F+ MVEK + + ++ YC + + A + + +
Sbjct: 448 VLIHGFCIKGQMNEASRLFKSMVEKMLEPNE-VIYNTMILGYCKEGSSYRALRLFRD-ME 505
Query: 543 EYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPFIKYVSKSGTSDDAI 602
E +L P +Y LI+ L +R K+A L+ M D G P D +S++ T D +
Sbjct: 506 EKELAPNVASYSYLIRVLCKERKLKEAEDLVEKMIDSGIDP-SDTICNLISRAKT-DSPV 563
Query: 603 A 603
A
Sbjct: 564 A 564
>gi|15226583|ref|NP_179165.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75216226|sp|Q9ZQF1.1|PP152_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At2g15630, mitochondrial; Flags: Precursor
gi|4335729|gb|AAD17407.1| putative salt-inducible protein [Arabidopsis thaliana]
gi|330251331|gb|AEC06425.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 627
Score = 59.3 bits (142), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 92/428 (21%), Positives = 167/428 (39%), Gaps = 40/428 (9%)
Query: 218 LEKLKGIFATGSIDNSIEKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKL 277
L K KG + N I + SR+ ++ + ++ D+ R NV N ++ + +
Sbjct: 180 LMKEKGFYPKTETCNHILTLLSRLNRIENAWVFYADMYRMEIKSNVYTFNIMINVLCKE- 238
Query: 278 GDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEME 337
+ KKA F E G +K +YN + I+ ++ EM+SKG++ +M+
Sbjct: 239 -GKLKKAKGFLGIMEVFG-IKPTIVTYNTLVQGFSLRGRIEGARLIISEMKSKGFQPDMQ 296
Query: 338 TCVKVL------GRFSE--RNM-----VKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVS 384
T +L GR SE R M V ++V C N + F R +V
Sbjct: 297 TYNPILSWMCNEGRASEVLREMKEIGLVPDSVSYNILIRGCSNNGDLEM-AFAYRDEMVK 355
Query: 385 KQLDMRLFSK------------------VVRVFRENGNVLTDAMLNSVLKALISVGRMGE 426
+ + ++ ++R RE G VL N ++ G +
Sbjct: 356 QGMVPTFYTYNTLIHGLFMENKIEAAEILIREIREKGIVLDSVTYNILINGYCQHGDAKK 415
Query: 427 CNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIK 486
+ M G + + + + L K EA+E + + G M +L+
Sbjct: 416 AFALHDEMMTDGIQPTQFTYTSLIYVLCRKNKTREADELFEKVVGKGMKPDLVMMNTLMD 475
Query: 487 GHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDL 546
GHC G++D+A ++M + + + L+ C + + +A + + R +
Sbjct: 476 GHCAIGNMDRAFSLLKEM-DMMSINPDDVTYNCLMRGLCGEGKFEEARELMGEMKRR-GI 533
Query: 547 KPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFV---DPFIKYVSKSGTSDDAIA 603
KP H +Y LI + K A + M GF P + + +K +SK+ + A
Sbjct: 534 KPDHISYNTLISGYSKKGDTKHAFMVRDEMLSLGFNPTLLTYNALLKGLSKNQEGELAEE 593
Query: 604 FLKGMTSK 611
L+ M S+
Sbjct: 594 LLREMKSE 601
Score = 43.1 bits (100), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 76/385 (19%), Positives = 148/385 (38%), Gaps = 53/385 (13%)
Query: 120 QLELSGVVFTHEMVLKVLKNLESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGL 179
++E+ V+T +++ VL E +A+ F ++E + + TYN +++ + G
Sbjct: 218 RMEIKSNVYTFNIMINVLCK-EGKLKKAKGFLG-IMEVFGIKPTIVTYNTLVQGFSLRGR 275
Query: 180 VQEFWGLVDVMKKKGYGVASHVRNKMTEKFEKEGLESDLEKLKGIFATGSIDNSIE-KVA 238
++ ++ MK KG+ N + EG S E L+ + G + +S+ +
Sbjct: 276 IEGARLIISEMKSKGFQPDMQTYNPILSWMCNEGRAS--EVLREMKEIGLVPDSVSYNIL 333
Query: 239 SRICK----VVRSDIWGDDVERQLRDLNVTFSNDLVK--FVVDKLGDEPKKALIFFRWAE 292
R C + + + D++ +Q N L+ F+ +K+ + A I R
Sbjct: 334 IRGCSNNGDLEMAFAYRDEMVKQGMVPTFYTYNTLIHGLFMENKI----EAAEILIREIR 389
Query: 293 ESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMV 352
E G V D +YN + + + + + + DEM + G + T ++ +N
Sbjct: 390 EKGIVL-DSVTYNILINGYCQHGDAKKAFALHDEMMTDGIQPTQFTYTSLIYVLCRKNKT 448
Query: 353 KEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLN 412
+EA +L+E + KP + M+N
Sbjct: 449 READELFEKVVGKGMKPDL-------------------------------------VMMN 471
Query: 413 SVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEAS 472
+++ ++G M +LK M+ + + L GK +EA E M M+
Sbjct: 472 TLMDGHCAIGNMDRAFSLLKEMDMMSINPDDVTYNCLMRGLCGEGKFEEARELMGEMKRR 531
Query: 473 GSDVGDKMWVSLIKGHCVAGDLDKA 497
G + +LI G+ GD A
Sbjct: 532 GIKPDHISYNTLISGYSKKGDTKHA 556
>gi|224108788|ref|XP_002314968.1| predicted protein [Populus trichocarpa]
gi|222864008|gb|EEF01139.1| predicted protein [Populus trichocarpa]
Length = 662
Score = 59.3 bits (142), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 87/401 (21%), Positives = 159/401 (39%), Gaps = 29/401 (7%)
Query: 252 DDVERQLRDLNVTFSNDLVKFVVDKLGDEPK--KALIFFRWAEESGFVKHDESSYNAMAS 309
+ ++ + +DLN+ ++ V++KL +EP AL FF+ S KH +Y M
Sbjct: 26 NPLQNEQKDLNLLKESE----VLNKLKNEPNILLALHFFKSIANSNSFKHTPLTYTTMIK 81
Query: 310 VLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKP 369
LG E ID +L M+ +G + V V+ + + ++A+ + KP
Sbjct: 82 RLGYERDIDGIQYLLQLMKLEGISCNEDLFVIVINAYRRAGLAEQALKTFYRIGEFGCKP 141
Query: 370 SVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNK 429
SV +L ++ + M + + + +G L N +LKAL R+ K
Sbjct: 142 SVKIYNHVLDALLSENKFQM--INGIYNNMKRDGIELNVYTYNMLLKALCKNDRVDAARK 199
Query: 430 ILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHC 489
+L M G I + + + + GK +EA E +++ ++ +LI G C
Sbjct: 200 LLAEMSYKGCIPDAVSYTTVVSSMCRLGKVEEARELSMRIKSF-----VPVYNALINGFC 254
Query: 490 VAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNR-----AIDACKFVHNCVREY 544
+++ + F +M EG ++NT A+ A F+ C
Sbjct: 255 REHKMEEVFELFNEMA-VEGIDPDVITYSTVINTLSEMGNVEMALAVLAKMFLRGC---- 309
Query: 545 DLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFV---DPFIKYVSKSGTSDDA 601
P T+ L+K + +AL L M G P + I + G +A
Sbjct: 310 --SPNVHTFTSLMKGYFMGGRLCEALDLWNRMIQEGSEPNTVAYNTLIHGLCSYGKMVEA 367
Query: 602 IAFLKGMT-SKRFPSMSVVLCLFAAFFQARRHSEAQDLLSK 641
++ + M + FP+ + L F +A A ++ +K
Sbjct: 368 VSVSQKMERNGVFPNETTYSTLIDGFAKAGDLVGASEIWNK 408
Score = 48.9 bits (115), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 101/486 (20%), Positives = 176/486 (36%), Gaps = 68/486 (13%)
Query: 135 KVLKNLESSPD--EARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLVDVMKK 192
+VL L++ P+ A FF + S + + TY M++ +G + L+ +MK
Sbjct: 42 EVLNKLKNEPNILLALHFFKSIANSNSFKHTPLTYTTMIKRLGYERDIDGIQYLLQLMKL 101
Query: 193 KGYGVASHVRNKMTEKFEKEGLESDLEKLKGIFATGSIDNSIEKVASRICKVVRSDIWGD 252
+G + + + + GL + LK + G CK
Sbjct: 102 EGISCNEDLFVIVINAYRRAGLAE--QALKTFYRIGEFG----------CKP-------- 141
Query: 253 DVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALI--FFRWAEESGFVKHDESSYNAMASV 310
S + V+D L E K +I + + G ++ + +YN +
Sbjct: 142 -------------SVKIYNHVLDALLSENKFQMINGIYNNMKRDG-IELNVYTYNMLLKA 187
Query: 311 LGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEA----------VDLYE 360
L + D +D K+L EM KG + + V+ V+EA V +Y
Sbjct: 188 LCKNDRVDAARKLLAEMSYKGCIPDAVSYTTVVSSMCRLGKVEEARELSMRIKSFVPVYN 247
Query: 361 FAMA--CKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNV-LTDAML------ 411
+ C+ V D+ +S V+ E GNV + A+L
Sbjct: 248 ALINGFCREHKMEEVFELFNEMAVEGIDPDVITYSTVINTLSEMGNVEMALAVLAKMFLR 307
Query: 412 ---------NSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEA 462
S++K GR+ E + M + G ++ + + L S GK EA
Sbjct: 308 GCSPNVHTFTSLMKGYFMGGRLCEALDLWNRMIQEGSEPNTVAYNTLIHGLCSYGKMVEA 367
Query: 463 NEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVN 522
ME +G + + +LI G AGDL A++ + KM+ G +V+
Sbjct: 368 VSVSQKMERNGVFPNETTYSTLIDGFAKAGDLVGASEIWNKMI-TNGCLPNVVVYTCMVD 426
Query: 523 TYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFP 582
C + A + N + + P T+ IK L + A+ +L M+ +G
Sbjct: 427 VLCRNSMFNHALHLIEN-MANGNCPPNTITFNTFIKGLCCSGKTEWAMKVLNQMRQYGCA 485
Query: 583 PFVDPF 588
P V +
Sbjct: 486 PNVTTY 491
>gi|224103961|ref|XP_002313262.1| predicted protein [Populus trichocarpa]
gi|222849670|gb|EEE87217.1| predicted protein [Populus trichocarpa]
Length = 559
Score = 59.3 bits (142), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 56/212 (26%), Positives = 90/212 (42%), Gaps = 6/212 (2%)
Query: 404 NVLTDAM-LNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEA 462
N+L D + N+++ L R+ + +L ME +S + L G+ +EA
Sbjct: 5 NILPDIVSYNTIINGLCKEKRLEKAVDLLVEMEGSSCEPNSFTYCILMDGLCKEGRVEEA 64
Query: 463 NEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVN 522
+ M+ G +V ++ +LI G C G LD+ F +M+EK G S L+N
Sbjct: 65 MRLLGEMKRKGLEVDVVVYSTLISGFCSKGCLDRGKALFDEMLEK-GISPNVVVYSCLIN 123
Query: 523 TYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFP 582
+C K +A +H + E ++P TY +I L + AL L LM + G
Sbjct: 124 GFCKKGLWREATAVLHT-MTERGIQPDVYTYTCMIGGLCKDGRARKALDLFDLMTEKGEE 182
Query: 583 PFV---DPFIKYVSKSGTSDDAIAFLKGMTSK 611
P + I + K G DA + M K
Sbjct: 183 PSTVTYNVLINGLCKEGCIGDAFKIFETMLEK 214
Score = 47.8 bits (112), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 53/261 (20%), Positives = 110/261 (42%), Gaps = 35/261 (13%)
Query: 279 DEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMET 338
DE K +F E+ +V+ D ++N + L +E +D+ ++ D M +G + T
Sbjct: 237 DEAMK--LFSSLLEDGNYVEPDVITFNTVIQGLCKEGRLDKAVEIYDTMIERGSFGNLFT 294
Query: 339 CVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMR--LFSKVV 396
C ++G + + ++ +A++L++ PS + ++ L+ LFS++
Sbjct: 295 CHILIGEYIKSGIIDKAMELWKRVHKLGLVPSSTTYSVMIDGFCKMHMLNFAKGLFSRMK 354
Query: 397 ----------------------------RVFRE--NGNVLTDAM-LNSVLKALISVGRMG 425
R+F+E N D + N ++ + G +
Sbjct: 355 ISGLSPTLFDYNTLMASLCKESSLEQARRLFQEMKESNCEPDTISFNIMIDGTLKAGDIH 414
Query: 426 ECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLI 485
++L M++ G + S RLS G+ +EA D M ASG + ++ SLI
Sbjct: 415 SAKELLNDMQQMGLTPDAYTYSSFINRLSKLGQMEEAKGAFDSMIASGITPDNHVYDSLI 474
Query: 486 KGHCVAGDLDKAADCFQKMVE 506
KG + ++++ + ++M +
Sbjct: 475 KGFGLNDEIEEVINLLRQMAD 495
Score = 47.8 bits (112), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 95/462 (20%), Positives = 179/462 (38%), Gaps = 61/462 (13%)
Query: 155 LEKESERLSSKTYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRNKMTEKFEKEGL 214
+E S +S TY +++ + G V+E L+ MK+KG V V + + F +G
Sbjct: 36 MEGSSCEPNSFTYCILMDGLCKEGRVEEAMRLLGEMKRKGLEVDVVVYSTLISGFCSKGC 95
Query: 215 ESDLEKLKGIF---ATGSIDNSIEKVASRICKVVRSDIWGDDV-------ERQLRDLNVT 264
L++ K +F I ++ + I + +W + ER ++ T
Sbjct: 96 ---LDRGKALFDEMLEKGISPNVVVYSCLINGFCKKGLWREATAVLHTMTERGIQPDVYT 152
Query: 265 FSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVL 324
++ + D +KAL F E G + +YN + + L +E CI +K+
Sbjct: 153 YTCMIGGLCKD---GRARKALDLFDLMTEKG-EEPSTVTYNVLINGLCKEGCIGDAFKIF 208
Query: 325 DEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVS 384
+ M KG +E+ + ++ + EA
Sbjct: 209 ETMLEKGKRLEVVSYNTLIMGLCNNGKLDEA----------------------------- 239
Query: 385 KQLDMRLFSKVVRVFRENGNVLTDAML--NSVLKALISVGRMGECNKILKAMEEGGFIAS 442
M+LFS ++ E+GN + ++ N+V++ L GR+ + +I M E G +
Sbjct: 240 ----MKLFSSLL----EDGNYVEPDVITFNTVIQGLCKEGRLDKAVEIYDTMIERGSFGN 291
Query: 443 SNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQ 502
+ +G D+A E + G + +I G C L+ A F
Sbjct: 292 LFTCHILIGEYIKSGIIDKAMELWKRVHKLGLVPSSTTYSVMIDGFCKMHMLNFAKGLFS 351
Query: 503 KMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLV 562
+M + G S + + L+ + C K +++ + + ++E + +P ++ +I L
Sbjct: 352 RM-KISGLSPTLFDYNTLMASLC-KESSLEQARRLFQEMKESNCEPDTISFNIMIDGTLK 409
Query: 563 QRGFKDALSLLCLMKDHGFPP---FVDPFIKYVSKSGTSDDA 601
A LL M+ G P FI +SK G ++A
Sbjct: 410 AGDIHSAKELLNDMQQMGLTPDAYTYSSFINRLSKLGQMEEA 451
>gi|296089773|emb|CBI39592.3| unnamed protein product [Vitis vinifera]
Length = 577
Score = 59.3 bits (142), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 61/239 (25%), Positives = 99/239 (41%), Gaps = 9/239 (3%)
Query: 404 NVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEAN 463
NV+T + V+ L VG+ + +++ M+ GF S + I AGK +A+
Sbjct: 228 NVVT---FDVVINGLCKVGKFQKAGDVVEDMKAWGFSPSVITYNTIIDGYCKAGKMFKAD 284
Query: 464 EFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNT 523
+ M A + + LI G C ++ A F++M +++G + L+N
Sbjct: 285 ALLKEMVAKRIHPNEITFNILIDGFCRDENVTAAKKVFEEM-QRQGLQPNVVTYNSLING 343
Query: 524 YCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPP 583
CS N +D + + + LKP TY LI ++ K+A +L + G P
Sbjct: 344 LCS-NGKLDEALGLQDKMSGMGLKPNVVTYNALINGFCKKKMLKEAREMLDDIGKRGLAP 402
Query: 584 FVDPF---IKYVSKSGTSDDAIAFLKGMTSKRF-PSMSVVLCLFAAFFQARRHSEAQDL 638
V F I K+G DDA M P++S CL F + EA+ L
Sbjct: 403 NVITFNTLIDAYGKAGRMDDAFLLRSMMLDTGVCPNVSTYNCLIVGFCREGNVKEARKL 461
Score = 42.0 bits (97), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 64/304 (21%), Positives = 126/304 (41%), Gaps = 10/304 (3%)
Query: 208 KFEKEGLESDLEKLKGIFATGSIDNSIEKVASRICKVVRSD-IWGDDVERQLRDLNVTFS 266
KF+K G + K G + N+I + K+ ++D + + V +++ +TF+
Sbjct: 244 KFQKAGDVVEDMKAWGFSPSVITYNTIIDGYCKAGKMFKADALLKEMVAKRIHPNEITFN 303
Query: 267 NDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDE 326
+ F D+ KK F + G ++ + +YN++ + L +D + D+
Sbjct: 304 ILIDGFCRDENVTAAKKV---FEEMQRQG-LQPNVVTYNSLINGLCSNGKLDEALGLQDK 359
Query: 327 MRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQ 386
M G + + T ++ F ++ M+KEA ++ + P+V L+ + +
Sbjct: 360 MSGMGLKPNVVTYNALINGFCKKKMLKEAREMLDDIGKRGLAPNVITFNTLIDAYGKAGR 419
Query: 387 LDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMK 446
+D + + + + G + N ++ G + E K+ K ME G A
Sbjct: 420 MDDAFLLRSMML--DTGVCPNVSTYNCLIVGFCREGNVKEARKLAKEMEGNGLKADLVTY 477
Query: 447 SKIAFRLSSAGKKDEANEFMDHM---EASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQK 503
+ + L G+ +A +D M E G + LIKG C G L++A +
Sbjct: 478 NILVDALCKKGETRKAVRLLDEMTLMEKKGRRANIVTYNVLIKGFCNKGKLEEANRLLNE 537
Query: 504 MVEK 507
M+EK
Sbjct: 538 MLEK 541
>gi|115463377|ref|NP_001055288.1| Os05g0355200 [Oryza sativa Japonica Group]
gi|55168028|gb|AAV43896.1| unknown protein [Oryza sativa Japonica Group]
gi|55168069|gb|AAV43937.1| unknown protein [Oryza sativa Japonica Group]
gi|113578839|dbj|BAF17202.1| Os05g0355200 [Oryza sativa Japonica Group]
Length = 632
Score = 59.3 bits (142), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 83/419 (19%), Positives = 161/419 (38%), Gaps = 53/419 (12%)
Query: 254 VERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEE----SGFVKHDESSYNAMAS 309
+E L L+ S LV V+D+ + + FFRWA SG H +Y M
Sbjct: 170 LEAALTALSPPLSETLVLAVLDRFKHAHRPSHRFFRWAAAAAAASGGFAHTTITYCKMVH 229
Query: 310 VLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMAC---K 366
+LG+ ++ EM +G + M+ + F+ +K AV ++E
Sbjct: 230 ILGKARQFQSMVALIQEMGKEG-ALCMDAFKIAIKSFAAAGEIKNAVGVFEMMRTHGFDD 288
Query: 367 NKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGE 426
S NC L + + ++ + ++F ++ + + T ML A + + E
Sbjct: 289 GVESFNCLLVALAQEGLGREAN-QVFDRMRDRYAPDLRSYTALML-----AWCNARNLVE 342
Query: 427 CNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIK 486
++ M E G + + + L ++ EA + + M+A G + LI+
Sbjct: 343 AGRVWNEMLENGLKPDVVVHNTMIEGLLRGQRRPEAVKMFELMKAKGPAPNVWTYTMLIR 402
Query: 487 GHCVAGDLDKAADCFQKM----------------------------------VEKEGTSH 512
HC G +D A CF++M + ++G
Sbjct: 403 DHCKRGKMDMAMRCFEEMQDVGCQPDVATYTCLLVGYGNAKRMDRVTALLEEMTQKGCPP 462
Query: 513 AGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKN-LLVQRGFKDALS 571
G + L+ ++N DA + +++ L+P TY ++K+ L R + +
Sbjct: 463 DGRTYNALIKLLTNRNMPDDAARIYKKMIKK-GLEPTIHTYNMMMKSYFLGGRNYMMGCA 521
Query: 572 LLCLMKDHGFPPFVDPFIKYVS---KSGTSDDAIAFLKGMTSKRFPSMSVVLCLFAAFF 627
+ M G P V+ + +++ + G ++A +++ M K + + FAA F
Sbjct: 522 VWEEMHRKGICPDVNSYTVFINGHIRHGRPEEACKYIEEMIQKGMKTPQIDYNKFAADF 580
Score = 45.8 bits (107), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 86/428 (20%), Positives = 161/428 (37%), Gaps = 56/428 (13%)
Query: 128 FTHEMVLKVLKNLESSPDEARRFFNWVLEKESER----LSSKTYNLMLRIVGVHGLVQEF 183
+ +VL VL + + + RFF W + ++ TY M+ I+G Q
Sbjct: 181 LSETLVLAVLDRFKHAHRPSHRFFRWAAAAAAASGGFAHTTITYCKMVHILGKARQFQSM 240
Query: 184 WGLVDVMKKKGYGVASHVRNKMTEKFEKEGLESDLEK--LKGIFATGSIDNSIEKVASRI 241
L+ M K+G L D K +K A G I N++ +
Sbjct: 241 VALIQEMGKEG------------------ALCMDAFKIAIKSFAAAGEIKNAVG-----V 277
Query: 242 CKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDE 301
+++R+ + D VE +F+ LV + LG E + +F R + D
Sbjct: 278 FEMMRTHGFDDGVE--------SFNCLLVALAQEGLGREANQ--VFDRMRDRYA---PDL 324
Query: 302 SSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEM---ETCVKVLGRFSERNMVKEAVDL 358
SY A+ + +V +EM G + ++ T ++ L R R EAV +
Sbjct: 325 RSYTALMLAWCNARNLVEAGRVWNEMLENGLKPDVVVHNTMIEGLLRGQRR---PEAVKM 381
Query: 359 YEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKAL 418
+E A P+V T L+R ++DM +R F E +V + + L
Sbjct: 382 FELMKAKGPAPNVWTYTMLIRDHCKRGKMDM-----AMRCFEEMQDVGCQPDVATYTCLL 436
Query: 419 ISVG---RMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSD 475
+ G RM +L+ M + G + + L++ D+A M G +
Sbjct: 437 VGYGNAKRMDRVTALLEEMTQKGCPPDGRTYNALIKLLTNRNMPDDAARIYKKMIKKGLE 496
Query: 476 VGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACK 535
+ ++K + + G + + ++G + + +N + R +ACK
Sbjct: 497 PTIHTYNMMMKSYFLGGRNYMMGCAVWEEMHRKGICPDVNSYTVFINGHIRHGRPEEACK 556
Query: 536 FVHNCVRE 543
++ +++
Sbjct: 557 YIEEMIQK 564
>gi|255584797|ref|XP_002533116.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223527079|gb|EEF29261.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 1204
Score = 59.3 bits (142), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 81/173 (46%), Gaps = 2/173 (1%)
Query: 411 LNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHME 470
+ + + + +G++ E ++ + ME+ G+I S +++ I S K EA F+D M
Sbjct: 945 IRTAVTCMCDLGQLSEVLELSQEMEKRGWIHGSFVQNAIVESFLSHDKLQEAEYFLDRMA 1004
Query: 471 ASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRA 530
+G + +LIK C G L+KA D M+ K G + + + D ++ C N+
Sbjct: 1005 DNGLIPDTINYDNLIKRFCFCGRLNKAVDLLNIMLRK-GNTPSSASYDCIIQGLCIWNQL 1063
Query: 531 IDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPP 583
+A F H + + +L+P T+ ++ NL +A LL M G P
Sbjct: 1064 NEAMDF-HTEMLDRELRPSMKTWNMIVHNLCQLGRTAEAEGLLISMAQLGETP 1115
Score = 41.2 bits (95), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 59/292 (20%), Positives = 111/292 (38%), Gaps = 34/292 (11%)
Query: 300 DESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLY 359
+ +Y A+ L + + D ++ + E++ C ++G MVK ++L
Sbjct: 591 ENGTYTALIVGLCKRGDLQAVRDCWDIAQNSKWLPELKDCKSLVGCLCYHRMVKGVIELL 650
Query: 360 EFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALI 419
E M L ++ ++ + K+V + G V + + + +L+ L
Sbjct: 651 ESMMVFYPHLRAEIFHMFLEELSITGFTSIA--HKLVDELLQQGCVFDNVVYSYLLRGLC 708
Query: 420 SVGRMGECNKILKAMEEGGFIASSNMKSKIAFR---------------LSSAGKKDEANE 464
+E +IA+S M ++ R L A + D A
Sbjct: 709 ---------------KERKYIAASTMAGEVLARNLVPCLDVSVILIPQLCKADRLDIAIA 753
Query: 465 FMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTY 524
D S + +L+KG C G + +AA+ Q M+ K G ++L Y
Sbjct: 754 LRDISLREQSVSQLSVDCALVKGFCKTGKIGEAANMLQNMLLK-GLLPDAEIYNMLFQGY 812
Query: 525 CSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLM 576
C N + + +R++ L P ++Y+ L + + + F ALSL LM
Sbjct: 813 CQANNWKKVRELLSVLIRKF-LSPSVSSYQNLARLMCMHGSFTSALSLKVLM 863
>gi|449527621|ref|XP_004170808.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
repeat-containing protein At1g13630-like [Cucumis
sativus]
Length = 830
Score = 59.3 bits (142), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 103/488 (21%), Positives = 190/488 (38%), Gaps = 37/488 (7%)
Query: 145 DEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRNK 204
D AR F ++ K S +YN++L + V G + E G D M+K G N
Sbjct: 288 DVARSXF-CLMVKNGLLHDSFSYNILLHGLCVAGSMDEALGFTDDMEKHGVEPDVVTYNT 346
Query: 205 MTEKFEKEGLESDLEKLKGIFATGSIDNSIEKVASRICKVVRSDIWGDDVERQLR----- 259
+ + F GL S K+ ++ + + IC + ++E L+
Sbjct: 347 LAKGFLLLGLMSGARKVVQKMLLQGLNPDLVTYTTLICGHCQMG----NIEEALKLRQET 402
Query: 260 -----DLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGRE 314
LNV F N L+ + K+G ++AL F E+ ++ D Y+ + L +E
Sbjct: 403 LSRGFKLNVIFYNMLLSCLC-KVG-RIEEALTLFD-EMETLRLEPDFIVYSILIHGLCKE 459
Query: 315 DCIDRFWKVLDEMRSK-GYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNC 373
+ R +++ ++MR K + +LG F N + EA + ++ V
Sbjct: 460 GFVQRAYQLYEQMRLKRKFPHHFAQRAVLLGLFKNGN-ISEARNYFDTWTRMDLMEDVVL 518
Query: 374 CTFLLRKIVVSKQLD-----MRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECN 428
++ V +LD M+L+ K++ E G + N+++ G + E
Sbjct: 519 YNIMIDGYV---RLDGIAEAMQLYYKMI----ERGITPSVVTFNTLINGFCRRGDLMEAR 571
Query: 429 KILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGH 488
K+L+ + G + S + + G E F+ MEA+ + LIKG
Sbjct: 572 KMLEVIRLKGLVPSVVTYTTLMNAYCEVGNMQEMFHFLHEMEANAVVPTHVTYTVLIKGL 631
Query: 489 CVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKP 548
C + ++ + M K G + ++ +C K + I ++N + ++ P
Sbjct: 632 CRQNKMHESLQLLEYMYAK-GLLPDSVTYNTIIQCFC-KGKEITKALQLYNMMLLHNCDP 689
Query: 549 WHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPF---IKYVSKSGTSDDAIAFL 605
TY+ LI L + KD ++ ++D + IK G A+ +
Sbjct: 690 TQVTYKVLINALCIFGDLKDVDRMVVSIEDRNITLKKXTYMTIIKAHCAKGQVSKALGYF 749
Query: 606 KGMTSKRF 613
M +K F
Sbjct: 750 NQMLAKGF 757
>gi|9502388|gb|AAF88095.1|AC025417_23 T12C24.15 [Arabidopsis thaliana]
Length = 735
Score = 59.3 bits (142), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 65/284 (22%), Positives = 116/284 (40%), Gaps = 11/284 (3%)
Query: 331 GYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMR 390
GYE + T ++ V EA++L + + +KP++ L +V L+ +
Sbjct: 137 GYEPDTVTFSTLINGLCLEGRVSEALELVDRMVEMGHKPTL----ITLNALVNGLCLNGK 192
Query: 391 LFSKVVRVFR--ENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSK 448
+ V+ + R E G + VLK + G+ ++L+ MEE + S
Sbjct: 193 VSDAVLLIDRMVETGFQPNEVTYGPVLKVMCKSGQTALAMELLRKMEERKIKLDAVKYSI 252
Query: 449 IAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKE 508
I L G D A + ME G ++ +LI+G C AG D A + M++++
Sbjct: 253 IIDGLCKDGSLDNAFNLFNEMEIKGFKADIIIYTTLIRGFCYAGRWDDGAKLLRDMIKRK 312
Query: 509 GTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKD 568
T A L++ + + + +A + +H + + + P TY LI +
Sbjct: 313 ITPDV-VAFSALIDCFVKEGKLREA-EELHKEMIQRGISPDTVTYTSLIDGFCKENQLDK 370
Query: 569 ALSLLCLMKDHGFPPFVDPF---IKYVSKSGTSDDAIAFLKGMT 609
A +L LM G P + F I K+ DD + + M+
Sbjct: 371 ANHMLDLMVSKGCGPNIRTFNILINGYCKANLIDDGLELFRKMS 414
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 102/459 (22%), Positives = 187/459 (40%), Gaps = 78/459 (16%)
Query: 140 LESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLVDVMKKKG----- 194
LE EA + ++E + + T N ++ + ++G V + L+D M + G
Sbjct: 154 LEGRVSEALELVDRMVEM-GHKPTLITLNALVNGLCLNGKVSDAVLLIDRMVETGFQPNE 212
Query: 195 --YGVASHVRNK---------MTEKFEKEGLESDLEK----LKGIFATGSIDNSIEKVAS 239
YG V K + K E+ ++ D K + G+ GS+DN+
Sbjct: 213 VTYGPVLKVMCKSGQTALAMELLRKMEERKIKLDAVKYSIIIDGLCKDGSLDNAFNLFNE 272
Query: 240 RICKVVRSDI---------------WGDDVERQLRDL-NVTFSNDLVKF--VVDKLGDEP 281
K ++DI W DD + LRD+ + D+V F ++D E
Sbjct: 273 MEIKGFKADIIIYTTLIRGFCYAGRW-DDGAKLLRDMIKRKITPDVVAFSALIDCFVKEG 331
Query: 282 KKALIFFRWAEE------SGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEME 335
K R AEE + D +Y ++ +E+ +D+ +LD M SKG
Sbjct: 332 K-----LREAEELHKEMIQRGISPDTVTYTSLIDGFCKENQLDKANHMLDLMVSKGCGPN 386
Query: 336 METCVKVLGRFSERNMVKEAVDLY-EFAMACKNKPSVNCCTFL-----LRKIVVSKQLDM 389
+ T ++ + + N++ + ++L+ + ++ +V T + L K+ V+K+L
Sbjct: 387 IRTFNILINGYCKANLIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLEVAKELFQ 446
Query: 390 RLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKI 449
+ S+ VR + +L D + ++ GE K L+ E+ I S M+ I
Sbjct: 447 EMVSRRVRPDIVSYKILLDGLCDN-----------GEPEKALEIFEK---IEKSKMELDI 492
Query: 450 AF------RLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQK 503
+ +A K D+A + + G K + +I G C G L +A F+K
Sbjct: 493 GIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPDVKTYNIMIGGLCKKGSLSEADLLFRK 552
Query: 504 MVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVR 542
M E++G S G ++L+ + + A + K + R
Sbjct: 553 M-EEDGHSPNGCTYNILIRAHLGEGDATKSAKLIEEIKR 590
>gi|297832604|ref|XP_002884184.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297330024|gb|EFH60443.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 829
Score = 59.3 bits (142), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 80/372 (21%), Positives = 152/372 (40%), Gaps = 52/372 (13%)
Query: 303 SYNAMASVLGREDCIDRFWK----VLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDL 358
+YN + V G+ + R W+ VL+EMRSKG + + TC VL + +++EA D
Sbjct: 254 TYNVILDVFGK---MGRSWRKILGVLEEMRSKGLKFDEFTCSTVLSACAREGLLREAKDF 310
Query: 359 YEFAMACKNKPSVNCCTFLLR----------KIVVSKQL-------DMRLFSKVVRVFRE 401
+ +C +P LL+ + V K++ D ++++V +
Sbjct: 311 FAELKSCGYEPGTVTYNALLQVFGKAGVYTEALSVLKEMEENNCPADSVTYNELVAAYAR 370
Query: 402 NG---------------NVLTDAML-NSVLKALISVGRMGECNKILKAMEEGGFIASSNM 445
G V+ +A+ +V+ A G+ E K+ +M+E G + ++
Sbjct: 371 AGFSKEAAVVIEMMTQKGVMPNAITYTTVIDAYGKAGKEDEALKLFYSMKEAGCVPNTCT 430
Query: 446 KSKIAFRLSSAGKKDEANEFMD---HMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQ 502
+ + LS GKK +NE + M+++G W +++ C +DK +
Sbjct: 431 YNAV---LSMLGKKSRSNEMIKMLCDMKSNGCFPNRATWNTIL-ALCGNKGMDKFVNRVF 486
Query: 503 KMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLV 562
+ ++ G + L++ Y +DA K R TTY L+ L
Sbjct: 487 REMKSCGFEPDRDTFNTLISAYGRCGSEVDASKMYGEMTRA-GFNACVTTYNALLNALAR 545
Query: 563 QRGFKDALSLLCLMKDHGFPPFVDPF---IKYVSKSGTSDDAIAFLKGMTSKR-FPSMSV 618
+ ++ +++ MK GF P + ++ +K G +G+ + FPS +
Sbjct: 546 KGDWRSGENVISDMKSKGFKPTETSYSLMLQCYAKGGNYLGIERIEEGINEGQIFPSWML 605
Query: 619 VLCLFAAFFQAR 630
+ L A F+ R
Sbjct: 606 LRTLLLANFKCR 617
Score = 58.2 bits (139), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 67/324 (20%), Positives = 129/324 (39%), Gaps = 10/324 (3%)
Query: 265 FSNDLVKFV--VDKLGDEPKKALIFFRW---AEESGFVKHDESSYNAMASVLGREDCIDR 319
+ DLV V +D G ++A+ F W + SG +K D + +LGRE
Sbjct: 142 LTTDLVSLVKGLDDSGHW-ERAVFLFEWLVLSSNSGALKLDHHVIEILVRILGRESQYSV 200
Query: 320 FWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLR 379
K+LD++ + Y +++ +L +S ++A++L+E P++ +L
Sbjct: 201 AAKLLDKIPLQDYMLDVRAYTTILHAYSRTGKYEKAINLFERMKEMGPSPTLVTYNVIL- 259
Query: 380 KIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGF 439
+ R V+ R G + ++VL A G + E ++ G+
Sbjct: 260 DVFGKMGRSWRKILGVLEEMRSKGLKFDEFTCSTVLSACAREGLLREAKDFFAELKSCGY 319
Query: 440 IASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAAD 499
+ + + AG EA + ME + + L+ + AG +AA
Sbjct: 320 EPGTVTYNALLQVFGKAGVYTEALSVLKEMEENNCPADSVTYNELVAAYARAGFSKEAAV 379
Query: 500 CFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKN 559
+ M +K G +++ Y + +A K ++ ++E P TY ++
Sbjct: 380 VIEMMTQK-GVMPNAITYTTVIDAYGKAGKEDEALKLFYS-MKEAGCVPNTCTYNAVLSM 437
Query: 560 LLVQRGFKDALSLLCLMKDHG-FP 582
L + + + +LC MK +G FP
Sbjct: 438 LGKKSRSNEMIKMLCDMKSNGCFP 461
>gi|222636287|gb|EEE66419.1| hypothetical protein OsJ_22769 [Oryza sativa Japonica Group]
Length = 1393
Score = 59.3 bits (142), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 86/370 (23%), Positives = 153/370 (41%), Gaps = 17/370 (4%)
Query: 166 TYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVR-NKMTEKFEKEGLESD-LEKLKG 223
TYN+ +R + G + E LVD M+ Y V V N + K+ + + + L+
Sbjct: 223 TYNIWIRGLCEAGRLPEAVRLVDGMR--AYAVPDVVTYNTLIRGLCKKSMPQEAMHYLRR 280
Query: 224 IFATGSI--DNSIEKVASRICKVV----RSDIWGDDVERQLRDLNVTFSNDLVKFVVDKL 277
+ G + D + + CK+ +++ D V + VT+ + + +
Sbjct: 281 MMNQGCLPDDFTYNTIIDGYCKISMVQEATELLKDAVFKGFVPDQVTYCSLINGLCAE-- 338
Query: 278 GDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEME 337
GD ++AL F A+ G +K D YN++ L + I +V++EM +G +++
Sbjct: 339 GDV-ERALELFNEAQAKG-IKPDIVVYNSLVKGLCLQGLILHALQVMNEMAEEGCHPDIQ 396
Query: 338 TCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVR 397
T V+ + + +A + A+ P V L+ +LD L ++V
Sbjct: 397 TYNIVINGLCKMGNISDATVVMNDAIMKGYLPDVFTFNTLIDGYCKRLKLDSAL--QLVE 454
Query: 398 VFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAG 457
E G NSVL L G++ E N+ + M G + + + +
Sbjct: 455 RMWEYGIAPDTITYNSVLNGLCKAGKVNEVNETFQEMILKGCHPNPITYNILIENFCRSN 514
Query: 458 KKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAI 517
K +EA++ + M G + +LI G C GDL+ A FQK+ EK G S
Sbjct: 515 KMEEASKVIVKMSQEGLHPDAVSFNTLIYGFCRNGDLEGAYLLFQKLEEK-GYSATADTF 573
Query: 518 DLLVNTYCSK 527
+ L+ + K
Sbjct: 574 NTLIGAFSGK 583
Score = 44.7 bits (104), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 41/188 (21%), Positives = 76/188 (40%), Gaps = 2/188 (1%)
Query: 396 VRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSS 455
+R G + D N+++ + + E ++LK GF+ + L +
Sbjct: 278 LRRMMNQGCLPDDFTYNTIIDGYCKISMVQEATELLKDAVFKGFVPDQVTYCSLINGLCA 337
Query: 456 AGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGY 515
G + A E + +A G ++ SL+KG C+ G + A +M E EG
Sbjct: 338 EGDVERALELFNEAQAKGIKPDIVVYNSLVKGLCLQGLILHALQVMNEMAE-EGCHPDIQ 396
Query: 516 AIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCL 575
++++N C DA +++ + + L P T+ LI + AL L+
Sbjct: 397 TYNIVINGLCKMGNISDATVVMNDAIMKGYL-PDVFTFNTLIDGYCKRLKLDSALQLVER 455
Query: 576 MKDHGFPP 583
M ++G P
Sbjct: 456 MWEYGIAP 463
>gi|414885390|tpg|DAA61404.1| TPA: hypothetical protein ZEAMMB73_280584 [Zea mays]
Length = 645
Score = 58.9 bits (141), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 95/433 (21%), Positives = 157/433 (36%), Gaps = 50/433 (11%)
Query: 184 WGLVDVMKKKGYGVASHVRNKMTEKFEKEGLESDLEKLKGIFATGSIDNSIEKVASRICK 243
W L D M ++G + N + +G + +++ ID ++ + IC
Sbjct: 171 WELFDEMLRRGLVPSVVTYNTLINACRFQGTVAKAQEVWDQMVAQQIDPNVVTYTTMICA 230
Query: 244 VVRSDIWGDDVERQLRDL-------NVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGF 296
+ GD ER + N N L+ + D+ A++ ++ +SG
Sbjct: 231 LCEEGCIGD-AERLFDAMKEAGMQPNQYTYNVLMSGHCQR--DDVNSAVVLYQELLKSGL 287
Query: 297 VKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEME-----TCVKVL-----GRF 346
N A + ID F K +KG +EM V V G F
Sbjct: 288 --------NPNAVIF--TTLIDGFCKAKRFSEAKGMFLEMPRFGVAPTVPVYNSLMDGAF 337
Query: 347 SERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVL 406
N +EA+ LY+ P C+ ++R + Q M + + ++ +E+G L
Sbjct: 338 RSGN-AQEALALYQEMTRLGLCPDEFTCSIVVRGLCDGGQ--MHVADRFLQGVQEDGVNL 394
Query: 407 TDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFM 466
A N+++ +G + E M E G + S + S GK A
Sbjct: 395 NAAAYNALIDEYCRIGNLEEALATCTRMTEVGIEPNVVSYSSLIDGHSKRGKMQIAMAIY 454
Query: 467 DHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCS 526
M A G + + +LI GH G +D A ++M+E G S + +LV+ C
Sbjct: 455 TEMVAKGIEPNVVTYTALIHGHAKNGGIDAAFRLHKEMIEN-GISPNAITVSVLVDGLCR 513
Query: 527 KNRAIDACKFVHN----------------CVREYDLKPWHTTYEELIKNLLVQRGFKDAL 570
+NR +A +FV + E L P Y LI L + +A
Sbjct: 514 ENRVQEAVRFVMEYSGLKCSDIHSVFSNFTIEEECLIPNSVIYMTLIYGLYLDGQHCEAG 573
Query: 571 SLLCLMKDHGFPP 583
L M+ G P
Sbjct: 574 KLFSYMRKSGMIP 586
Score = 48.5 bits (114), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 49/232 (21%), Positives = 91/232 (39%), Gaps = 5/232 (2%)
Query: 381 IVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFI 440
++V M L + + VFR + N+VL L+ R G ++ M G +
Sbjct: 124 VLVIALSQMGLLDEALYVFRRLRTLPALPACNAVLDGLVKARRPGCAWELFDEMLRRGLV 183
Query: 441 ASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADC 500
S + + G +A E D M A D + ++I C G + A
Sbjct: 184 PSVVTYNTLINACRFQGTVAKAQEVWDQMVAQQIDPNVVTYTTMICALCEEGCIGDAERL 243
Query: 501 FQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNL 560
F M E G Y ++L++ +C ++ +++ ++ + + L P + LI
Sbjct: 244 FDAMKEA-GMQPNQYTYNVLMSGHCQRDD-VNSAVVLYQELLKSGLNPNAVIFTTLIDGF 301
Query: 561 LVQRGFKDALSLLCLMKDHGFPPFV---DPFIKYVSKSGTSDDAIAFLKGMT 609
+ F +A + M G P V + + +SG + +A+A + MT
Sbjct: 302 CKAKRFSEAKGMFLEMPRFGVAPTVPVYNSLMDGAFRSGNAQEALALYQEMT 353
>gi|410109873|gb|AFV61016.1| pentatricopeptide repeat-containing protein 11, partial [Aloysia
citrodora]
Length = 380
Score = 58.9 bits (141), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 66/265 (24%), Positives = 103/265 (38%), Gaps = 24/265 (9%)
Query: 293 ESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMV 352
ESGF++ Y L RE +FW LD TC KVL +
Sbjct: 76 ESGFLRDAIECYR-----LTREH---KFWVPLD------------TCRKVLEHLMKLKYF 115
Query: 353 KEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLN 412
K Y+ + C S+ L+++ K+ D+R+ V+ + G + N
Sbjct: 116 KLVWGFYKEILECGYPASLYFFNILMQRFC--KEGDIRVAQLVLNAITKWGLRPSVVSFN 173
Query: 413 SVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEAS 472
+++ I +G + E ++ AM G S + L K D+ANE D M
Sbjct: 174 TLINGYIRLGDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDK 233
Query: 473 GSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAID 532
G + +LI GHC G +D A + +++M+ + S + L+ C K
Sbjct: 234 GMVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLS-QSLSPDLITYNTLIYGLCKKGELKQ 292
Query: 533 ACKFVHNCVREYDLKPWHTTYEELI 557
A + E LKP TY LI
Sbjct: 293 AHDLIDEMSME-GLKPDKITYTTLI 316
>gi|449440401|ref|XP_004137973.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g32630-like [Cucumis sativus]
Length = 606
Score = 58.9 bits (141), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 80/363 (22%), Positives = 147/363 (40%), Gaps = 54/363 (14%)
Query: 318 DRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFL 377
D +V D R KG+E++ +C +EF +A K ++ C
Sbjct: 139 DSSLEVFDYARKKGFEIDERSC-------------------FEFLLALKRSGNMELCVEF 179
Query: 378 LRKIVVSKQLDMRL--FSKVVRVFRENGNV-----LTDAML-----------NSVLKALI 419
LR++V S +++R+ ++ VV + G V L D ++ N++L I
Sbjct: 180 LRQMVDSG-IEIRVCSWTAVVDGLCKKGEVVRAKALMDELVCKGFKPSVITYNTLLNGYI 238
Query: 420 SVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDK 479
+ +G N+IL ME+ + + + S + K +EA + D M G +
Sbjct: 239 EIKDVGGVNEILSLMEKNVVDYNVTTYTMLIEWYSRSSKIEEAEKLFDEMLKKGIEPDVY 298
Query: 480 MWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHN 539
++ S+I +C G++ +A F +M E+ +A Y L+N C K + A + + N
Sbjct: 299 IYTSIINWNCKFGNMKRAFVLFDEMTERRLVPNA-YTYGALINGAC-KAGEMKAAEMMVN 356
Query: 540 CVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPFIKYVSKSG--- 596
++ + + L+ + +AL L +M+ GF +D F + SG
Sbjct: 357 DMQSKGVDVNRVIFNTLMDGYCKKGMIDEALRLQNIMQQKGFE--IDAFTCNIIASGFCR 414
Query: 597 --TSDDAIAFLKGMTSK-------RFPSMSVVLCLFAAFFQARRHSEAQDLLSKCPRYVR 647
++A L M + F + + C F +ARR + + K P V
Sbjct: 415 SNRREEAKRLLLTMEERGVAPNVVSFSILIDIYCKEQNFAEARRLFKVMEKKGKAPSVVT 474
Query: 648 NHA 650
+A
Sbjct: 475 YNA 477
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 69/322 (21%), Positives = 129/322 (40%), Gaps = 7/322 (2%)
Query: 293 ESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMV 352
E V ++ ++Y + R I+ K+ DEM KG E ++ ++ + +
Sbjct: 254 EKNVVDYNVTTYTMLIEWYSRSSKIEEAEKLFDEMLKKGIEPDVYIYTSIINWNCKFGNM 313
Query: 353 KEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLN 412
K A L++ + P+ L+ K +M+ +V + G + + N
Sbjct: 314 KRAFVLFDEMTERRLVPNAYTYGALING--ACKAGEMKAAEMMVNDMQSKGVDVNRVIFN 371
Query: 413 SVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEAS 472
+++ G + E ++ M++ GF + + IA + +++EA + ME
Sbjct: 372 TLMDGYCKKGMIDEALRLQNIMQQKGFEIDAFTCNIIASGFCRSNRREEAKRLLLTMEER 431
Query: 473 GSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAID 532
G + LI +C + +A F K++EK+G + + + + YC K + +
Sbjct: 432 GVAPNVVSFSILIDIYCKEQNFAEARRLF-KVMEKKGKAPSVVTYNAFIERYCKKGKMEE 490
Query: 533 ACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPF---I 589
A K + N ++E L P TY LI AL L M G V + I
Sbjct: 491 AYKLI-NEMQERGLMPDTYTYTSLIDGERASGNVDRALELFNEMPQLGLNRNVVTYTVII 549
Query: 590 KYVSKSGTSDDAIAFLKGMTSK 611
+SK G +D+A M +
Sbjct: 550 SGLSKDGRADEAFKLYDEMNKE 571
Score = 45.1 bits (105), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 43/206 (20%), Positives = 87/206 (42%), Gaps = 3/206 (1%)
Query: 304 YNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAM 363
+N + ++ ID ++ + M+ KG+E++ TC + F N +EA L
Sbjct: 370 FNTLMDGYCKKGMIDEALRLQNIMQQKGFEIDAFTCNIIASGFCRSNRREEAKRLLLTME 429
Query: 364 ACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGR 423
P+V + L+ + K+ + ++ +V + G + N+ ++ G+
Sbjct: 430 ERGVAPNVVSFSILID--IYCKEQNFAEARRLFKVMEKKGKAPSVVTYNAFIERYCKKGK 487
Query: 424 MGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVS 483
M E K++ M+E G + + + + ++G D A E + M G + +
Sbjct: 488 MEEAYKLINEMQERGLMPDTYTYTSLIDGERASGNVDRALELFNEMPQLGLNRNVVTYTV 547
Query: 484 LIKGHCVAGDLDKAADCFQKMVEKEG 509
+I G G D+A + +M KEG
Sbjct: 548 IISGLSKDGRADEAFKLYDEM-NKEG 572
Score = 40.8 bits (94), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 59/136 (43%), Gaps = 2/136 (1%)
Query: 425 GECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSL 484
E ++ K ME+ G S + R GK +EA + ++ M+ G + SL
Sbjct: 454 AEARRLFKVMEKKGKAPSVVTYNAFIERYCKKGKMEEAYKLINEMQERGLMPDTYTYTSL 513
Query: 485 IKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREY 544
I G +G++D+A + F +M + G + ++++ RA +A K +E
Sbjct: 514 IDGERASGNVDRALELFNEM-PQLGLNRNVVTYTVIISGLSKDGRADEAFKLYDEMNKE- 571
Query: 545 DLKPWHTTYEELIKNL 560
+ P Y LI +L
Sbjct: 572 GIVPDDGIYSSLIASL 587
>gi|357508583|ref|XP_003624580.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355499595|gb|AES80798.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 585
Score = 58.9 bits (141), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 84/403 (20%), Positives = 164/403 (40%), Gaps = 78/403 (19%)
Query: 253 DVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLG 312
+++++L D NV S++LV V+ ++ ++ + A FF WA + H Y++M SVLG
Sbjct: 117 EIKQKLEDCNVKASSELVVEVLSRVRNDWEAAFTFFLWAGKQPGYDHSVREYHSMISVLG 176
Query: 313 REDCIDRFWKVLDEMRSKGYEMEM----ETCVKVLGRFSERNMVKEAVD----------- 357
+ D W +++EMR +G E +T + ++ ++ + V A++
Sbjct: 177 KMRRFDTAWALVEEMR-RGKTGESIVTPQTLLIMIRKYCAVHDVGRAINTFYAFKRFNFQ 235
Query: 358 --LYEF----AMACKNK--------------------PSVNCCTFLLRKIVVSKQLDMRL 391
LYEF + C+ K S N ++VS + R+
Sbjct: 236 VGLYEFQGLLSALCRYKNVQDAEHLLFCNKNVFPLDTKSFNIILNGWCNLIVSARNAERI 295
Query: 392 FSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAF 451
+ ++ + R +V++ A S++ ++ ++ + M++ + + + F
Sbjct: 296 WEEMSKR-RIQHDVVSYA---SIISCYSKSSKLYRVLQLFEQMKKRNITPDRKVYNAVIF 351
Query: 452 RLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKE--- 508
L+ EA + ME + + SLIK C A +D+A + F M+E+
Sbjct: 352 SLAKNRMVKEAVNLIIKMEDNNVTPDAITYNSLIKPLCKARKIDEAKEIFNVMLERGISP 411
Query: 509 --GTSHAGYAI--------------------------DLLVNTYCSKNRAIDACKFVHNC 540
T HA + I +L+ +C + R +D K + N
Sbjct: 412 SIRTFHAFFRILRVKEEVFELLDKMKELGCNPTIETYIMLIRKFC-RWRQLDEVKRIWNA 470
Query: 541 VREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPP 583
+RE + ++Y LI L + ++A M++ GF P
Sbjct: 471 MREDGIGHDRSSYIVLIHGLFLNCKVEEAYKYYIEMQEKGFLP 513
>gi|357120446|ref|XP_003561938.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g16880-like [Brachypodium distachyon]
Length = 787
Score = 58.9 bits (141), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 110/492 (22%), Positives = 179/492 (36%), Gaps = 63/492 (12%)
Query: 166 TYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRNKMTEKFEKEGLESDLEKLKGIF 225
TYN +L G++ E L+ MKK G N + + +
Sbjct: 241 TYNTLLNAHCRKGMLGEARALLARMKKDGVAPTRPTYNTLVSAYAR-------------- 286
Query: 226 ATGSIDNSIEKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVD---KLGDEPK 282
G I + + V + D+W NV + VD +L DE
Sbjct: 287 -LGWIKQATKVVEAMTANGFEPDLW---------TYNVLAAGLCQAGKVDEAFRLKDE-- 334
Query: 283 KALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKV 342
E G + D +YN +A + C ++L+EMR KG + + T V
Sbjct: 335 --------MERLGTLLPDVVTYNTLADACFKCRCSSDALRLLEEMREKGVKATLVTHNIV 386
Query: 343 LGRFSERNMVKEAVDLYEFAMACKNK-------PSVNCCTFLLRKIVVSKQL--DMRLFS 393
+ + + K+ E A+ C NK P V L+ + + L
Sbjct: 387 I-----KGLCKDGE--LEGALGCLNKMADDGLAPDVITYNTLIHAHCKAGNIAKAYTLMD 439
Query: 394 KVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRL 453
++VR G L LN+VL L R E +L++ + GF+ +
Sbjct: 440 EMVR----RGLKLDTFTLNTVLYNLCKEKRYEEAQGLLQSPPQRGFMPDEVSYGTVMAAY 495
Query: 454 SSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHA 513
+ A D M + +LIKG G L +A D +++EK G
Sbjct: 496 FKEYNSEPALRLWDEMIEKKLTPSISTYNTLIKGLSRMGRLKEAIDKLNELMEK-GLVPD 554
Query: 514 GYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLL 573
+++++ YC + +A +F HN + E KP T L+ L + AL L
Sbjct: 555 DTTYNIIIHAYCKEGDLENAFQF-HNKMVENSFKPDVVTCNTLMNGLCLNGKLDKALKLF 613
Query: 574 CLMKDHGFPPFV---DPFIKYVSKSGTSDDAIAFLKGMTSKRF-PSMSVVLCLFAAFFQA 629
+ G V + I+ + K G D A+ F M ++ P + +A +A
Sbjct: 614 ESWVEKGKKVDVITYNTLIQTMCKDGDVDTALHFFADMEARGLQPDAFTYNVVLSALSEA 673
Query: 630 RRHSEAQDLLSK 641
R EAQ++L K
Sbjct: 674 GRTEEAQNMLHK 685
Score = 47.4 bits (111), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 58/238 (24%), Positives = 98/238 (41%), Gaps = 7/238 (2%)
Query: 412 NSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEA 471
N++L A G +GE +L M++ G + + + + G +A + ++ M A
Sbjct: 243 NTLLNAHCRKGMLGEARALLARMKKDGVAPTRPTYNTLVSAYARLGWIKQATKVVEAMTA 302
Query: 472 SGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNR-A 530
+G + + L G C AG +D+A +M E+ GT + C K R +
Sbjct: 303 NGFEPDLWTYNVLAAGLCQAGKVDEAFRLKDEM-ERLGTLLPDVVTYNTLADACFKCRCS 361
Query: 531 IDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFV---DP 587
DA + + +RE +K T+ +IK L + AL L M D G P V +
Sbjct: 362 SDALRLLEE-MREKGVKATLVTHNIVIKGLCKDGELEGALGCLNKMADDGLAPDVITYNT 420
Query: 588 FIKYVSKSGTSDDAIAFLKGMTSKRFPSMSVVL-CLFAAFFQARRHSEAQDLLSKCPR 644
I K+G A + M + + L + + +R+ EAQ LL P+
Sbjct: 421 LIHAHCKAGNIAKAYTLMDEMVRRGLKLDTFTLNTVLYNLCKEKRYEEAQGLLQSPPQ 478
Score = 40.4 bits (93), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 55/125 (44%), Gaps = 5/125 (4%)
Query: 515 YAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLC 574
Y +LLV+T+CSK DA + + ++ + L P TY L+ + +A +LL
Sbjct: 205 YTFNLLVHTHCSKGTLADALSTL-STMQGFGLSPDAVTYNTLLNAHCRKGMLGEARALLA 263
Query: 575 LMKDHGFPPFVDPFIKYVS---KSGTSDDAIAFLKGMTSKRF-PSMSVVLCLFAAFFQAR 630
MK G P + VS + G A ++ MT+ F P + L A QA
Sbjct: 264 RMKKDGVAPTRPTYNTLVSAYARLGWIKQATKVVEAMTANGFEPDLWTYNVLAAGLCQAG 323
Query: 631 RHSEA 635
+ EA
Sbjct: 324 KVDEA 328
Score = 39.3 bits (90), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 49/229 (21%), Positives = 92/229 (40%), Gaps = 5/229 (2%)
Query: 302 SSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEF 361
S+YN + L R + L+E+ KG + T ++ + + ++ A +
Sbjct: 521 STYNTLIKGLSRMGRLKEAIDKLNELMEKGLVPDDTTYNIIIHAYCKEGDLENAFQFHNK 580
Query: 362 AMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISV 421
+ KP V C L+ + ++ +LD L K+ + E G + N++++ +
Sbjct: 581 MVENSFKPDVVTCNTLMNGLCLNGKLDKAL--KLFESWVEKGKKVDVITYNTLIQTMCKD 638
Query: 422 GRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMW 481
G + ME G + + + LS AG+ +EA + + SG+ +
Sbjct: 639 GDVDTALHFFADMEARGLQPDAFTYNVVLSALSEAGRTEEAQNMLHKLAESGT-LSQSFS 697
Query: 482 VSLIKGHCV-AGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNR 529
L+K V + K A ++ VE S A A LVN C+ +
Sbjct: 698 SPLLKPSSVDEAESGKDAKTEEETVENPQDS-ASEAYTKLVNGLCTSGQ 745
>gi|449437886|ref|XP_004136721.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g06400, mitochondrial-like [Cucumis sativus]
gi|449501176|ref|XP_004161299.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g06400, mitochondrial-like [Cucumis sativus]
Length = 1037
Score = 58.9 bits (141), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 71/353 (20%), Positives = 144/353 (40%), Gaps = 8/353 (2%)
Query: 231 DNSIEKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRW 290
+N + V I V+R +E +L +L+V FS+++V+ V+ + P AL FF W
Sbjct: 123 ENDVSSVVHEITAVIRGGNGLVSMEERLGNLDVMFSSEIVEKVLKRCFKFPHLALGFFNW 182
Query: 291 AEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERN 350
+ + + +N + S+ G K+L+EM S +++T ++ +
Sbjct: 183 VKSRDGFQCTTNVFNTVLSIAGEARDFKLIDKLLEEMESYSLLKDIKTWTILISLYGNAK 242
Query: 351 MVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVS--KQLDMRLFSKVVRVFRENGNVLTD 408
+ +++ +Y +P L+ + + +L M + ++ ++ +V+
Sbjct: 243 LTGKSLMVYSKMKESGCEPDGVVYKTLICSLSAAGKPELAMEFYQEMA---KKGISVVDM 299
Query: 409 AMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDH 468
M +L +L G I K M + ++ I + + EA EF+
Sbjct: 300 KMCKMLLSSLAGSGDTASVLDIAKDMVALFNVQERDVYHYILKSFCISRRIKEALEFIRD 359
Query: 469 MEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKN 528
+ + G + + + LI G C A ++ A + + K Y I ++N Y KN
Sbjct: 360 LNSKGIVLDSEYFEILIGGLCRANRIEDALELINIIKRKGDVDGKIYGI--IINWYLRKN 417
Query: 529 RAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGF 581
A N ++E P +TY +L+++L ++ L M + G
Sbjct: 418 EVSKALDLFQN-MKEMGYFPTTSTYTQLMQHLFSLAEYEKGFELYKEMLEKGI 469
Score = 57.4 bits (137), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 75/381 (19%), Positives = 148/381 (38%), Gaps = 43/381 (11%)
Query: 241 ICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHD 300
I K++ S +++ L + +V FS +LV ++ K + A FF W + H
Sbjct: 623 IYKILSSSTDWKLIKKALENCSVEFSPELVIEILRKCSLDGCAAFNFFAWVGKQPGYNHT 682
Query: 301 ESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYE 360
+YN + G + EMR +G + T ++ +++ + + A+ YE
Sbjct: 683 TETYNMAIKIAGLGKDFKHMRSLFYEMRRRGCSITPYTWTIMIMQYARAGLTEIALKSYE 742
Query: 361 FAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRE--NGNVLTDA-MLNSVLKA 417
KP+ N +L+ + SK+ R + + +F+E + + D +L + L
Sbjct: 743 EMKEINIKPNANTYKYLIMSLCESKR---RKVDEAITLFQEMIHSKYIPDKELLETYLGC 799
Query: 418 LISVGRMGECNKILKAMEEGGFIA-----------------------------------S 442
L + R+ + K + + + GF
Sbjct: 800 LCKLSRLSDAKKCIDHLRKVGFSIPLTYSLYIRALCRARKLDEALTLLEEVVGDERSKLD 859
Query: 443 SNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQ 502
S + + + L G+ +EA M+ M+ G + ++ S I +A +
Sbjct: 860 SYIYGSLVYGLLQTGRTEEALAKMNSMKQVGINPTVHVYTSFIVYSFKEKQTRRALEILA 919
Query: 503 KMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLV 562
KM++ EG + +V+ Y + + +A K V N +++Y P Y LI L
Sbjct: 920 KMLQ-EGCEPSIATYSAIVHGYMNMGKVCEAWK-VFNYMKKYGPSPDFKAYTMLISCLCK 977
Query: 563 QRGFKDALSLLCLMKDHGFPP 583
++AL ++ M ++G P
Sbjct: 978 AGRSEEALEIISDMLNNGIAP 998
Score = 49.3 bits (116), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 56/118 (47%)
Query: 97 KESDFTVVSDIFYKFSDVNDISKQLELSGVVFTHEMVLKVLKNLESSPDEARRFFNWVLE 156
+E D + I +D I K LE V F+ E+V+++L+ A FF WV +
Sbjct: 616 REEDLDAIYKILSSSTDWKLIKKALENCSVEFSPELVIEILRKCSLDGCAAFNFFAWVGK 675
Query: 157 KESERLSSKTYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRNKMTEKFEKEGL 214
+ +++TYN+ ++I G+ + L M+++G + + M ++ + GL
Sbjct: 676 QPGYNHTTETYNMAIKIAGLGKDFKHMRSLFYEMRRRGCSITPYTWTIMIMQYARAGL 733
Score = 49.3 bits (116), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 82/411 (19%), Positives = 175/411 (42%), Gaps = 51/411 (12%)
Query: 126 VVFTHEMVLKVLKNLESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVG-------VHG 178
V+F+ E+V KVLK P A FFNWV ++ + ++ +N +L I G +
Sbjct: 155 VMFSSEIVEKVLKRCFKFPHLALGFFNWVKSRDGFQCTTNVFNTVLSIAGEARDFKLIDK 214
Query: 179 LVQEF--WGLVDVMKKKGYGVASHVRNKMT-------EKFEKEGLESDLEKLKGIFATGS 229
L++E + L+ +K ++ + K+T K ++ G E D K + + S
Sbjct: 215 LLEEMESYSLLKDIKTWTILISLYGNAKLTGKSLMVYSKMKESGCEPDGVVYKTLICSLS 274
Query: 230 ---------------IDNSIEKVASRICKVVRSDIWGD-------DVERQLRDLNVTFSN 267
I V ++CK++ S + G D+ + + L
Sbjct: 275 AAGKPELAMEFYQEMAKKGISVVDMKMCKMLLSSLAGSGDTASVLDIAKDMVALFNVQER 334
Query: 268 DLVKFVVDK--LGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLD 325
D+ +++ + K+AL F R G V D + + L R + I+ ++++
Sbjct: 335 DVYHYILKSFCISRRIKEALEFIRDLNSKGIV-LDSEYFEILIGGLCRANRIEDALELIN 393
Query: 326 EMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKI--VV 383
++ KG +++ + ++ + +N V +A+DL++ P+ + T L++ + +
Sbjct: 394 IIKRKG-DVDGKIYGIIINWYLRKNEVSKALDLFQNMKEMGYFPTTSTYTQLMQHLFSLA 452
Query: 384 SKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASS 443
+ L+ +++ E G L + +V+ + R+ E + + ME S
Sbjct: 453 EYEKGFELYKEML----EKGIELDTVAIMTVVVGNVRQNRITEAWNVFRTMENKPTWKSC 508
Query: 444 NMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDL 494
++ + FR+S + DE + ++ M+ + DK++ S++ GD+
Sbjct: 509 SVFIRELFRIS---RTDEIVKVLNEMQELNIVIPDKLFRSVVSYMEKNGDV 556
>gi|359488009|ref|XP_003633686.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g12700, mitochondrial-like [Vitis vinifera]
Length = 579
Score = 58.9 bits (141), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 77/348 (22%), Positives = 143/348 (41%), Gaps = 14/348 (4%)
Query: 300 DESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLY 359
D +++ + + E I + D+M +G+ ++ T ++ + A+ L
Sbjct: 130 DTATFTTLIRGIYVEGKIGEALHLFDKMIGEGFRPDVVTYGTLINGLCKVGNTSAAIRLL 189
Query: 360 EFAMACKN-KPSVNCCTFLLRKIVVSKQLD--MRLFSKVVRVFRENGNVLTDAMLNSVLK 416
+M KN +P+V ++ + +Q+ LFS++V G NS++
Sbjct: 190 G-SMVQKNCQPNVFAYNTIIDSLCKDRQVTEAFNLFSEMV----TKGISPDIFTYNSLIH 244
Query: 417 ALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDV 476
AL ++ +L M + + + + L GK EA++ +D M G +
Sbjct: 245 ALCNLCEWKHVATLLNEMVDSKIMPDVVSFNTVVDALCKEGKVTEAHDVVDKMIQRGVEP 304
Query: 477 GDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKF 536
+ +L+ GHC+ ++D+A F MV K G + + L+N YC R ID +
Sbjct: 305 NVVTYTALMDGHCLLSEMDEAVKVFDTMVCK-GCMPNVISYNTLINGYCKIQR-IDKAMY 362
Query: 537 VHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPF---IKYVS 593
+ + +L P TY LI L +DA++L M P + + + Y+
Sbjct: 363 LFGEMCRQELIPDTVTYSTLIHGLCHVERLQDAIALFHEMVACSQIPNLVTYRILLDYLC 422
Query: 594 KSGTSDDAIAFLKGMTSKRF-PSMSVVLCLFAAFFQARRHSEAQDLLS 640
K+ +A+A LK + P + V +A A+DL S
Sbjct: 423 KNRYLAEAMALLKAIEGSNLDPDIQVNNIAIDGMCRAGELEAARDLFS 470
Score = 43.9 bits (102), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 110/543 (20%), Positives = 205/543 (37%), Gaps = 88/543 (16%)
Query: 88 YSSEPAMEQKESDFTVVSDIFYKFSDVNDISKQLELSGVVFTHEMVLKVLKNLESSPDEA 147
+S+ ++ + F + +I+ +N L+ V F ++ K+LK L PD A
Sbjct: 77 HSTLLSLSHQMDSFGIPPNIYTLHILINSFC---HLNRVGFAFSVLAKILK-LGHQPDTA 132
Query: 148 RRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRNKMTE 207
T+ ++R + V G + E L D M +G+
Sbjct: 133 ------------------TFTTLIRGIYVEGKIGEALHLFDKMIGEGF------------ 162
Query: 208 KFEKEGLESDLEKLKGIFATGSIDNSIEKVASRICKVVRSDIWGDD--VERQLRDLNVTF 265
+ + + + G+ G+ +I + S + K + +++ + ++ +D VT
Sbjct: 163 ---RPDVVTYGTLINGLCKVGNTSAAIRLLGSMVQKNCQPNVFAYNTIIDSLCKDRQVTE 219
Query: 266 SNDLVKFVVDKLGDEPK----KALI-----FFRWAEESGFVKH--------DESSYNAMA 308
+ +L +V K G P +LI W + + D S+N +
Sbjct: 220 AFNLFSEMVTK-GISPDIFTYNSLIHALCNLCEWKHVATLLNEMVDSKIMPDVVSFNTVV 278
Query: 309 SVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKN- 367
L +E + V+D+M +G E + T ++ + + EAV +++ M CK
Sbjct: 279 DALCKEGKVTEAHDVVDKMIQRGVEPNVVTYTALMDGHCLLSEMDEAVKVFD-TMVCKGC 337
Query: 368 KPSVNCCTFLLRKIVVSKQLD--MRLFSKVVRVFRENGNVLTDAMLNSVL-KALISVGRM 424
P+V L+ +++D M LF ++ R ++ D + S L L V R+
Sbjct: 338 MPNVISYNTLINGYCKIQRIDKAMYLFGEMCR-----QELIPDTVTYSTLIHGLCHVERL 392
Query: 425 GECNKILKAMEEGGFIASSNMKSKIAFR-----LSSAGKKDEANEFMDHMEASGSDVGDK 479
+ + M +A S + + + +R L EA + +E S D +
Sbjct: 393 QDAIALFHEM-----VACSQIPNLVTYRILLDYLCKNRYLAEAMALLKAIEGSNLDPDIQ 447
Query: 480 MWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHN 539
+ I G C AG+L+ A D F + K G + +++N C + +A K
Sbjct: 448 VNNIAIDGMCRAGELEAARDLFSNLSSK-GLQPDVWTYSIMINGLCRRGLLDEASKL--- 503
Query: 540 CVREYDLKPWH---TTYEELIKNLLVQRGFKDALSLLCLMKDHGF---PPFVDPFIKYVS 593
RE D Y + + L A+ LL M GF + F+K +S
Sbjct: 504 -FREMDENGCTLNGCIYNTITRGFLRNNETSRAIQLLQEMVARGFSADASTMTLFVKMLS 562
Query: 594 KSG 596
G
Sbjct: 563 DDG 565
>gi|125551971|gb|EAY97680.1| hypothetical protein OsI_19602 [Oryza sativa Indica Group]
Length = 586
Score = 58.9 bits (141), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 83/419 (19%), Positives = 161/419 (38%), Gaps = 53/419 (12%)
Query: 254 VERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEE----SGFVKHDESSYNAMAS 309
+E L L+ S LV V+D+ + + FFRWA SG H +Y M
Sbjct: 170 LEAALTALSPPLSETLVLAVLDRFKHAHRPSHRFFRWAAAAAAASGGFAHTTITYCKMVH 229
Query: 310 VLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACK--- 366
+LG+ ++ EM +G + M+ + F+ +K AV ++E
Sbjct: 230 ILGKARQFQSMVALIQEMGKEG-ALCMDAFKIAIKSFAAAGEIKNAVGVFEMMRTHGFDD 288
Query: 367 NKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGE 426
S NC L + + ++ + ++F ++ + + T ML A + + E
Sbjct: 289 GVESFNCLLVALAQEGLGREAN-QVFDRMRDRYAPDLRSYTALML-----AWCNARNLVE 342
Query: 427 CNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIK 486
++ M E G + + + L ++ EA + + M+A G + LI+
Sbjct: 343 AGRVWNEMLENGLKPDVVVHNTMIEGLLRGQRRPEAVKMFELMKAKGPAPNVWTYTMLIR 402
Query: 487 GHCVAGDLDKAADCFQKM----------------------------------VEKEGTSH 512
HC G +D A CF++M + ++G
Sbjct: 403 DHCKRGKMDMAMRCFEEMQDVGCQPDVATYTCLLVGYGNAKRMDRVTALLEEMTQKGCPP 462
Query: 513 AGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKN-LLVQRGFKDALS 571
G + L+ ++N DA + +++ L+P TY ++K+ L R + +
Sbjct: 463 DGRTYNALIKLLTNRNMPDDAARIYKKMIKK-GLEPTIHTYNMMMKSYFLGGRNYMMGCA 521
Query: 572 LLCLMKDHGFPPFVDPFIKYVS---KSGTSDDAIAFLKGMTSKRFPSMSVVLCLFAAFF 627
+ M G P V+ + +++ + G ++A +++ M K + + FAA F
Sbjct: 522 VWEEMHRKGICPDVNSYTVFINGHIRHGRPEEACKYIEEMIQKGMKTPQIDYNKFAADF 580
Score = 45.4 bits (106), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 86/428 (20%), Positives = 161/428 (37%), Gaps = 56/428 (13%)
Query: 128 FTHEMVLKVLKNLESSPDEARRFFNWVLEKESER----LSSKTYNLMLRIVGVHGLVQEF 183
+ +VL VL + + + RFF W + ++ TY M+ I+G Q
Sbjct: 181 LSETLVLAVLDRFKHAHRPSHRFFRWAAAAAAASGGFAHTTITYCKMVHILGKARQFQSM 240
Query: 184 WGLVDVMKKKGYGVASHVRNKMTEKFEKEGLESDLEK--LKGIFATGSIDNSIEKVASRI 241
L+ M K+G L D K +K A G I N++ +
Sbjct: 241 VALIQEMGKEG------------------ALCMDAFKIAIKSFAAAGEIKNAVG-----V 277
Query: 242 CKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDE 301
+++R+ + D VE +F+ LV + LG E + +F R + D
Sbjct: 278 FEMMRTHGFDDGVE--------SFNCLLVALAQEGLGREANQ--VFDRMRDRYA---PDL 324
Query: 302 SSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEM---ETCVKVLGRFSERNMVKEAVDL 358
SY A+ + +V +EM G + ++ T ++ L R R EAV +
Sbjct: 325 RSYTALMLAWCNARNLVEAGRVWNEMLENGLKPDVVVHNTMIEGLLRGQRR---PEAVKM 381
Query: 359 YEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKAL 418
+E A P+V T L+R ++DM +R F E +V + + L
Sbjct: 382 FELMKAKGPAPNVWTYTMLIRDHCKRGKMDM-----AMRCFEEMQDVGCQPDVATYTCLL 436
Query: 419 ISVG---RMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSD 475
+ G RM +L+ M + G + + L++ D+A M G +
Sbjct: 437 VGYGNAKRMDRVTALLEEMTQKGCPPDGRTYNALIKLLTNRNMPDDAARIYKKMIKKGLE 496
Query: 476 VGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACK 535
+ ++K + + G + + ++G + + +N + R +ACK
Sbjct: 497 PTIHTYNMMMKSYFLGGRNYMMGCAVWEEMHRKGICPDVNSYTVFINGHIRHGRPEEACK 556
Query: 536 FVHNCVRE 543
++ +++
Sbjct: 557 YIEEMIQK 564
>gi|255660860|gb|ACU25599.1| pentatricopeptide repeat-containing protein [Petrea racemosa]
Length = 418
Score = 58.9 bits (141), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 64/292 (21%), Positives = 114/292 (39%), Gaps = 5/292 (1%)
Query: 266 SNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLD 325
+ L++ VV + G + A +F E G + D ++ + + I +
Sbjct: 32 AKSLIQTVVSRKGKDSASA-VFAAILETKGTQRSDIYVFSGLITAYLESGFIRDAIECFR 90
Query: 326 EMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSK 385
+ + + +TC VL + K Y+ + C S+ L+ + K
Sbjct: 91 LTKKHSFRVPFDTCRNVLEHLMKXKYFKLVWGFYKEILECGYPASLYFFNILMHRFC--K 148
Query: 386 QLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNM 445
+ +MRL V + G + N+++ I +G + E ++ AM G
Sbjct: 149 EGEMRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMRASGVQPDVYT 208
Query: 446 KSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMV 505
S + L + DEAN M +G + +LI GHC G LD A D +++M+
Sbjct: 209 YSVLINGLCKESRMDEANGLFGEMLDNGLVPNGVTFTTLIDGHCKNGRLDLAMDIYRQML 268
Query: 506 EKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELI 557
+G S + L+ C K A +++ + + LKP TY LI
Sbjct: 269 -NQGFSPDVVTYNTLIYGLCKKGDLKQA-RYLLDEMSRKGLKPDKITYTTLI 318
Score = 56.2 bits (134), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 47/185 (25%), Positives = 75/185 (40%), Gaps = 2/185 (1%)
Query: 401 ENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKD 460
+NG V +++ GR+ I + M GF + + + L G
Sbjct: 234 DNGLVPNGVTFTTLIDGHCKNGRLDLAMDIYRQMLNQGFSPDVVTYNTLIYGLCKKGDLK 293
Query: 461 EANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLL 520
+A +D M G + +LI G C GDL+ A + ++M+ KE L
Sbjct: 294 QARYLLDEMSRKGLKPDKITYTTLIDGSCKEGDLETAFELRERMI-KESIRLDDVVYTAL 352
Query: 521 VNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHG 580
+ C + RA+DA K + +R LKP TY ++ + K A LL M+ +G
Sbjct: 353 IFGLCQEGRAVDAEKMLREMLR-VGLKPDDETYTMIMNEFCKKGDVKKASELLREMQRNG 411
Query: 581 FPPFV 585
P V
Sbjct: 412 RVPCV 416
>gi|218198940|gb|EEC81367.1| hypothetical protein OsI_24568 [Oryza sativa Indica Group]
Length = 1380
Score = 58.9 bits (141), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 86/370 (23%), Positives = 153/370 (41%), Gaps = 17/370 (4%)
Query: 166 TYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVR-NKMTEKFEKEGLESD-LEKLKG 223
TYN+ +R + G + E LVD M+ Y V V N + K+ + + + L+
Sbjct: 224 TYNIWIRGLCEAGRLPEAVRLVDGMR--AYAVPDVVTYNTLIRGLCKKSMPQEAMHYLRR 281
Query: 224 IFATGSI--DNSIEKVASRICKVV----RSDIWGDDVERQLRDLNVTFSNDLVKFVVDKL 277
+ G + D + + CK+ +++ D V + VT+ + + +
Sbjct: 282 MMNQGCLPDDFTYNTIIDGYCKISMVQEATELLKDAVFKGFVPDQVTYCSLINGLCAE-- 339
Query: 278 GDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEME 337
GD ++AL F A+ G +K D YN++ L + I +V++EM +G +++
Sbjct: 340 GDV-ERALELFNEAQAKG-IKPDIVVYNSLVKGLCLQGLILHALQVMNEMAEEGCHPDIQ 397
Query: 338 TCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVR 397
T V+ + + +A + A+ P V L+ +LD L ++V
Sbjct: 398 TYNIVINGLCKMGNISDATVVMNDAIMKGYLPDVFTFNTLIDGYCKRLKLDSAL--QLVE 455
Query: 398 VFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAG 457
E G NSVL L G++ E N+ + M G + + + +
Sbjct: 456 RMWEYGIAPDTITYNSVLNGLCKAGKVNEVNETFQEMILKGCHPNPITYNILIENFCRSN 515
Query: 458 KKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAI 517
K +EA++ + M G + +LI G C GDL+ A FQK+ EK G S
Sbjct: 516 KMEEASKVIVKMSQEGLHPDAVSFNTLIYGFCRNGDLEGAYLLFQKLEEK-GYSATADTF 574
Query: 518 DLLVNTYCSK 527
+ L+ + K
Sbjct: 575 NTLIGAFSGK 584
Score = 44.7 bits (104), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 41/188 (21%), Positives = 76/188 (40%), Gaps = 2/188 (1%)
Query: 396 VRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSS 455
+R G + D N+++ + + E ++LK GF+ + L +
Sbjct: 279 LRRMMNQGCLPDDFTYNTIIDGYCKISMVQEATELLKDAVFKGFVPDQVTYCSLINGLCA 338
Query: 456 AGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGY 515
G + A E + +A G ++ SL+KG C+ G + A +M E EG
Sbjct: 339 EGDVERALELFNEAQAKGIKPDIVVYNSLVKGLCLQGLILHALQVMNEMAE-EGCHPDIQ 397
Query: 516 AIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCL 575
++++N C DA +++ + + L P T+ LI + AL L+
Sbjct: 398 TYNIVINGLCKMGNISDATVVMNDAIMKGYL-PDVFTFNTLIDGYCKRLKLDSALQLVER 456
Query: 576 MKDHGFPP 583
M ++G P
Sbjct: 457 MWEYGIAP 464
>gi|15234349|ref|NP_194530.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75208278|sp|Q9SUD8.1|PP340_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g28010
gi|4455360|emb|CAB36770.1| putative protein [Arabidopsis thaliana]
gi|7269655|emb|CAB79603.1| putative protein [Arabidopsis thaliana]
gi|332660020|gb|AEE85420.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 704
Score = 58.9 bits (141), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 75/160 (46%), Gaps = 5/160 (3%)
Query: 456 AGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGY 515
AGK DEA F+ M+ G + ++ SLI+G C G+LD+ F +++E+ G S
Sbjct: 225 AGKMDEAMGFLKEMKFMGLEADLVVYTSLIRGFCDCGELDRGKALFDEVLER-GDSPCAI 283
Query: 516 AIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCL 575
+ L+ +C + +A + + E ++P TY LI L K+AL LL L
Sbjct: 284 TYNTLIRGFCKLGQLKEASEIFEFMI-ERGVRPNVYTYTGLIDGLCGVGKTKEALQLLNL 342
Query: 576 MKDHGFPPFVDPF---IKYVSKSGTSDDAIAFLKGMTSKR 612
M + P + I + K G DA+ ++ M +R
Sbjct: 343 MIEKDEEPNAVTYNIIINKLCKDGLVADAVEIVELMKKRR 382
Score = 40.4 bits (93), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 76/345 (22%), Positives = 144/345 (41%), Gaps = 26/345 (7%)
Query: 315 DC--IDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVN 372
DC +DR + DE+ +G T ++ F + +KEA +++EF + +P+V
Sbjct: 259 DCGELDRGKALFDEVLERGDSPCAITYNTLIRGFCKLGQLKEASEIFEFMIERGVRPNVY 318
Query: 373 CCTFLLRKI--VVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKI 430
T L+ + V + ++L + ++ E V + ++N + K G + + +I
Sbjct: 319 TYTGLIDGLCGVGKTKEALQLLNLMIEKDEEPNAVTYNIIINKLCKD----GLVADAVEI 374
Query: 431 LKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHM--EASGSDVGDKMWVSLIKGH 488
++ M++ + + + L + G DEA++ + M ++S +D + +LI G
Sbjct: 375 VELMKKRRTRPDNITYNILLGGLCAKGDLDEASKLLYLMLKDSSYTDPDVISYNALIHGL 434
Query: 489 CVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSK---NRAIDACKFVHN--CVRE 543
C L +A D + +VEK G ++L+N+ N+A++ K + + VR
Sbjct: 435 CKENRLHQALDIYDLLVEKLGAGDR-VTTNILLNSTLKAGDVNKAMELWKQISDSKIVRN 493
Query: 544 YDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFV---DPFIKYVSKSGTSDD 600
D TY +I A LLC M+ P V + + + K G+ D
Sbjct: 494 SD------TYTAMIDGFCKTGMLNVAKGLLCKMRVSELQPSVFDYNCLLSSLCKEGSLDQ 547
Query: 601 AIAFLKGMT-SKRFPSMSVVLCLFAAFFQARRHSEAQDLLSKCPR 644
A + M FP + + +A A+ LL R
Sbjct: 548 AWRLFEEMQRDNNFPDVVSFNIMIDGSLKAGDIKSAESLLVGMSR 592
Score = 39.7 bits (91), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 84/370 (22%), Positives = 155/370 (41%), Gaps = 47/370 (12%)
Query: 146 EARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRNKM 205
EA + N ++EK+ E ++ TYN+++ + GLV + +V++MKK+ + N +
Sbjct: 335 EALQLLNLMIEKDEEP-NAVTYNIIINKLCKDGLVADAVEIVELMKKRRTRPDNITYNIL 393
Query: 206 TEKFEKEGLESDLEKLKGIFATGSIDNSIEKVASRICKVVRSDIWGDDVERQLRDLNVTF 265
L G+ A G +D AS++ ++ D D +V
Sbjct: 394 ---------------LGGLCAKGDLDE-----ASKLLYLMLKD-------SSYTDPDVIS 426
Query: 266 SNDLVKFVVDKLGDEPKKAL-IFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVL 324
N L+ + + + +AL I+ E+ G D + N + + + +++ ++
Sbjct: 427 YNALIHGLCKE--NRLHQALDIYDLLVEKLG--AGDRVTTNILLNSTLKAGDVNKAMELW 482
Query: 325 DEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSV---NCCTFLLRKI 381
++ +T ++ F + M+ A L + +PSV NC LL +
Sbjct: 483 KQISDSKIVRNSDTYTAMIDGFCKTGMLNVAKGLLCKMRVSELQPSVFDYNC---LLSSL 539
Query: 382 VVSKQLDM--RLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGF 439
LD RLF ++ R V + M++ LKA G + +L M G
Sbjct: 540 CKEGSLDQAWRLFEEMQRDNNFPDVVSFNIMIDGSLKA----GDIKSAESLLVGMSRAGL 595
Query: 440 IASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVA-GDLDKAA 498
SK+ R G DEA F D M SG + + S++K +C++ G+ DK
Sbjct: 596 SPDLFTYSKLINRFLKLGYLDEAISFFDKMVDSGFEPDAHICDSVLK-YCISQGETDKLT 654
Query: 499 DCFQKMVEKE 508
+ +K+V+K+
Sbjct: 655 ELVKKLVDKD 664
>gi|11994279|dbj|BAB01462.1| unnamed protein product [Arabidopsis thaliana]
Length = 648
Score = 58.9 bits (141), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 78/362 (21%), Positives = 141/362 (38%), Gaps = 9/362 (2%)
Query: 284 ALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVL 343
L F + E +G ++HD + M + R+ + + VL GYE + T ++
Sbjct: 118 VLGFCKGMELNG-IEHDMYTMTIMINCYCRKKKLLFAFSVLGRAWKLGYEPDTITFSTLV 176
Query: 344 GRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENG 403
F V EAV L + + K +P + + L+ + + ++ L ++ E G
Sbjct: 177 NGFCLEGRVSEAVALVDRMVEMKQRPDLVTVSTLINGLCLKGRVSEALV--LIDRMVEYG 234
Query: 404 NVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEAN 463
+ VL L G + + MEE AS S + L G D+A
Sbjct: 235 FQPDEVTYGPVLNRLCKSGNSALALDLFRKMEERNIKASVVQYSIVIDSLCKDGSFDDAL 294
Query: 464 EFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNT 523
+ ME G + SLI G C G D A ++M+ + L++
Sbjct: 295 SLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDV-VTFSALIDV 353
Query: 524 YCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPP 583
+ + + ++A K ++N + + P TY LI + +A + LM G P
Sbjct: 354 FVKEGKLLEA-KELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEP 412
Query: 584 FVDPF---IKYVSKSGTSDDAIAFLKGMTSKRF-PSMSVVLCLFAAFFQARRHSEAQDLL 639
+ + I K+ DD + + ++SK P+ L F Q+ + + A++L
Sbjct: 413 DIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELF 472
Query: 640 SK 641
+
Sbjct: 473 QE 474
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 79/351 (22%), Positives = 147/351 (41%), Gaps = 12/351 (3%)
Query: 237 VASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPK--KALIFFRWAEES 294
V +R+CK S + D+ R++ + N+ S V+D L + AL F E
Sbjct: 245 VLNRLCKSGNSAL-ALDLFRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMK 303
Query: 295 GFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKE 354
G +K D +Y+++ L + D K+L EM + ++ T ++ F + + E
Sbjct: 304 G-IKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLE 362
Query: 355 AVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDM--RLFSKVVRVFRENGNVLTDAMLN 412
A +LY + P L+ L ++F +V E V ++N
Sbjct: 363 AKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILIN 422
Query: 413 SVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEAS 472
S KA R+ + ++ + + G I ++ + + +GK + A E M +
Sbjct: 423 SYCKA----KRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSR 478
Query: 473 GSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAID 532
G + L+ G C G+L+KA + F+KM + T G +++++ C+ ++ D
Sbjct: 479 GVPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMTLGIGI-YNIIIHGMCNASKVDD 537
Query: 533 ACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPP 583
A + + + +KP TY +I L + +A L MK+ G P
Sbjct: 538 AWSLFCS-LSDKGVKPDVVTYNVMIGGLCKKGSLSEADMLFRKMKEDGCTP 587
>gi|357485117|ref|XP_003612846.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355514181|gb|AES95804.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 892
Score = 58.9 bits (141), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 68/345 (19%), Positives = 135/345 (39%), Gaps = 43/345 (12%)
Query: 297 VKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAV 356
V+ ++ + V ++ V + G E+ + +C +L E N V
Sbjct: 132 VEKSNVVFDMLIKVFASNSMLEHANYVFVRAKDDGIELNIMSCNFLLKCLVEDNRVDGVR 191
Query: 357 DLYEFAMACKNKPSVNCCTFLLRKIV--VSKQLDMRLFSKVVRVFRENGNVLTDAMLNSV 414
L+E + +P+++ T ++ V +D+R S+++ +G +
Sbjct: 192 LLFEVLIKFGPRPNIHTYTIMMNFFCRGVGCSVDIRRASEILGKIYMSGETPNVVTYGTY 251
Query: 415 LKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGS 474
+K L VG G ++++ + +++ + + + L G DEA+E M+ SG
Sbjct: 252 IKGLCKVGLFGVAWRLIQNLCRKNQPLNNHCFNAVIYGLCQGGILDEASEVFKEMKNSGI 311
Query: 475 DVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDAC 534
+ LI G C G +D+A++ F++M G Y+ +L++ +C + R A
Sbjct: 312 LPDVYSYSILIDGFCRKGRVDQASEVFKEM-RNSGILPNIYSYSILIDGFCKEGRVDKAL 370
Query: 535 KFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPF---IKY 591
+ +EE MK+ G P V + I
Sbjct: 371 E----------------VFEE--------------------MKNSGILPDVYSYSILIDG 394
Query: 592 VSKSGTSDDAIAFLKGMTSKRFPSMSVVLC-LFAAFFQARRHSEA 635
+ G D AI F + MTS F + C L ++++++ + A
Sbjct: 395 FCRKGDMDSAIKFWEEMTSNNFSPSAFNYCSLIKGYYKSKQFANA 439
Score = 47.0 bits (110), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 65/286 (22%), Positives = 111/286 (38%), Gaps = 24/286 (8%)
Query: 366 KNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRE--NGNVLTDAMLNSVL-KALISVG 422
KN+P N C V+ + + VF+E N +L D S+L G
Sbjct: 274 KNQPLNNHCF----NAVIYGLCQGGILDEASEVFKEMKNSGILPDVYSYSILIDGFCRKG 329
Query: 423 RMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWV 482
R+ + +++ K M G + + S + G+ D+A E + M+ SG +
Sbjct: 330 RVDQASEVFKEMRNSGILPNIYSYSILIDGFCKEGRVDKALEVFEEMKNSGILPDVYSYS 389
Query: 483 SLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVR 542
LI G C GD+D A +++M + A L+ Y SK A N ++
Sbjct: 390 ILIDGFCRKGDMDSAIKFWEEMTSNNFSPSAFNYCSLIKGYYKSKQFA--------NALK 441
Query: 543 EY----DLKPWHTTY--EELIKNLLVQRGFKDALSLLCLMKDHG--FPPF-VDPFIKYVS 593
E+ L W T ++ + F AL+L +++G F P+ + FI +
Sbjct: 442 EFRIMQKLGMWPDTIACNHILSIYCRKPDFNKALALSEKFQENGVHFNPYSYNEFIHRIC 501
Query: 594 KSGTSDDAIAFLKGMTSKRFPSMSVVLCLFAAFFQARRHSEAQDLL 639
+ + A+ L M + V + F R +SE +L
Sbjct: 502 RGSVPEKALQLLPVMLKRNVLPDVVNYSTLISCFAKRLNSEKAVML 547
>gi|296084128|emb|CBI24516.3| unnamed protein product [Vitis vinifera]
Length = 970
Score = 58.9 bits (141), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 55/221 (24%), Positives = 97/221 (43%), Gaps = 12/221 (5%)
Query: 377 LLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAML---NSVLKALISVGRMGECNKILKA 433
L+R+ V+S L +VVR + ++DA+L ++ L G + E +
Sbjct: 50 LIRRGVLS------LGQQVVRRMIKQSPSVSDAILAVDKRLIDGLCDKGHVDEAFYMFDT 103
Query: 434 MEE-GGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAG 492
M E G A+ ++ + + L + +EA F+ ME+ G + M+ SLI G+C
Sbjct: 104 MRERTGLPATIHLYKTLFYGLCRQERVEEAELFVGEMESEGHFIDKMMYTSLIHGYCRGK 163
Query: 493 DLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTT 552
+ A F +M+ K G Y + L++ + K D +HN + E+ L+P T
Sbjct: 164 KMRTAMRVFLRML-KMGCDPDTYTYNTLIHGFV-KLGLFDKGWILHNQMSEWGLQPNVVT 221
Query: 553 YEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPFIKYVS 593
Y +I+ + AL+LL M P V + ++
Sbjct: 222 YHIMIRRYCEEGKVDCALTLLSSMSSFNLTPSVHSYTVLIT 262
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 64/343 (18%), Positives = 134/343 (39%), Gaps = 43/343 (12%)
Query: 300 DESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLY 359
D +YN + + D+ W + ++M G + + T ++ R+ E V A+ L
Sbjct: 183 DTYTYNTLIHGFVKLGLFDKGWILHNQMSEWGLQPNVVTYHIMIRRYCEEGKVDCALTLL 242
Query: 360 EFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALI 419
+ PSV+ T L + +++EN
Sbjct: 243 SSMSSFNLTPSVHSYTVL-----------------ITALYKEN----------------- 268
Query: 420 SVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDK 479
R+ E ++ K M + G + + + + + A + + + +G ++ D
Sbjct: 269 ---RLVEVEELYKKMLDIGVVPDHVLFFTLMQKQPKGHELHLALKILQAIAKNGCNL-DL 324
Query: 480 MWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHN 539
+S H D+++ +C + + + A A + ++ C+ + A F+
Sbjct: 325 CLLSTSATHSPTQDVEQEIECLLGEIVRRNFALADVAFGIFISALCAAGKTDAALLFMDK 384
Query: 540 CVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPFIKYVSKSGTSD 599
V +P +TY LIK L +R +DA SL+ LM+++G P + ++ V +
Sbjct: 385 MV-SLGCRPLLSTYNSLIKCLFQERLVEDAKSLIDLMQENGIVPDLATYLIMVHEHCNHG 443
Query: 600 D---AIAFLKGMTSKRF-PSMSVVLCLFAAFFQARRHSEAQDL 638
D A L M + PS+++ + + +R EA+++
Sbjct: 444 DLASAFGLLDQMNERGLKPSVAIYDSIIGCLSRRKRILEAENV 486
Score = 47.4 bits (111), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 89/420 (21%), Positives = 171/420 (40%), Gaps = 40/420 (9%)
Query: 166 TYNLMLRIVGVHGLVQEFWGLVDVMKKKG-------YGVASHVRNKMTEKFEKEGLESDL 218
TYN +++ + LV++ L+D+M++ G Y + H + GL +
Sbjct: 396 TYNSLIKCLFQERLVEDAKSLIDLMQENGIVPDLATYLIMVHEHCNHGDLASAFGLLDQM 455
Query: 219 EKLKGIFATGSIDNSIEKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLG 278
+ +G+ + +I +SI SR +++ ++ +V + + + V D + +V G
Sbjct: 456 NE-RGLKPSVAIYDSIIGCLSRRKRILEAE----NVFKMMLEAGV--DPDAIIYVTMISG 508
Query: 279 DEPKKALI----FFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEM 334
+ I F E GF + SY A+ S L +E+ ID+ L +M G+
Sbjct: 509 YSKNRRAIEARQLFDKMIEHGF-QPSSHSYTAVISGLVKENMIDKGCSYLSDMLKDGFVP 567
Query: 335 EMETCVKVLGRFSERNMVKEAVDLYEF----AMACKNKPSVNCCTFLLRKIVVSKQLDMR 390
++ +F + ++ A L + + C + + + R I ++
Sbjct: 568 NTVLYTSLINQFLRKGELEFAFRLVDLMDRNQIECDMITCIALVSGVSRNITPVRRRWYH 627
Query: 391 LFSKVVRVFRENGNVLTDAMLNSVL---KALISVGRMGECNKI-------LKAMEEGGFI 440
+ S RV RE +L + S + + +S R G KI ++ ++ F+
Sbjct: 628 VKSGSARV-RE---ILLHLLHQSFVIPRENNLSFPR-GSPRKIKYFALNLMQKIKGSSFM 682
Query: 441 ASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADC 500
+ + + I A +A + M+ G + LI GH G++D A
Sbjct: 683 PNLYLYNGIISGFCRANMIQDAYNHFELMQTEGVCPNQVTFTILINGHTRFGEIDHAIGL 742
Query: 501 FQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNL 560
F KM +G + G + L+ C R +DA H + + L P ++YE+L+K L
Sbjct: 743 FNKM-NADGLAPDGITYNALIKGLCKAGRLLDALSVSHT-MHKRGLFPNKSSYEKLLKCL 800
>gi|15219409|ref|NP_178072.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75200774|sp|Q9SAJ5.1|PP133_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g79540
gi|4835755|gb|AAD30222.1|AC007202_4 Contains similarity to gi|2827663 F18F4.190 membrane-associated
salt-inducible-like protein from Arabidopsis thaliana
BAC gb|AL021637 [Arabidopsis thaliana]
gi|332198140|gb|AEE36261.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 780
Score = 58.9 bits (141), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 72/334 (21%), Positives = 137/334 (41%), Gaps = 13/334 (3%)
Query: 254 VERQLRDLNVTFSNDLVKFVVDKLGDEPKKAL--IFFRWAEESGFVKHDESSYNAMASVL 311
+E L L S +++ V+ DE + L FF WA S+ + +L
Sbjct: 47 IEPALEPLVPFLSKNIITSVIK---DEVNRQLGFRFFIWASRR-ERLRSRESFGLVIDML 102
Query: 312 GREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSV 371
++ D +W+ L+E++S G ++ ++ +++ M ++AV+ + +P V
Sbjct: 103 SEDNGCDLYWQTLEELKSGGVSVDSYCFCVLISAYAKMGMAEKAVESFGRMKEFDCRPDV 162
Query: 372 NCCTFLLRKIVVSKQLDMRLFSKVVRVFREN--GNVLTDAMLNSVLKALISVGRMGECNK 429
+LR ++ + M F+ + + N N+ T +L + L GR + K
Sbjct: 163 FTYNVILRVMMREEVFFMLAFAVYNEMLKCNCSPNLYTFGIL---MDGLYKKGRTSDAQK 219
Query: 430 ILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHC 489
+ M G + + + L G D+A + M+ SG+ +L+ G C
Sbjct: 220 MFDDMTGRGISPNRVTYTILISGLCQRGSADDARKLFYEMQTSGNYPDSVAHNALLDGFC 279
Query: 490 VAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPW 549
G + +A + ++ EK+G L++ R A + N +++ ++KP
Sbjct: 280 KLGRMVEAFELL-RLFEKDGFVLGLRGYSSLIDGLFRARRYTQAFELYANMLKK-NIKPD 337
Query: 550 HTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPP 583
Y LI+ L +DAL LL M G P
Sbjct: 338 IILYTILIQGLSKAGKIEDALKLLSSMPSKGISP 371
Score = 41.2 bits (95), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 57/249 (22%), Positives = 93/249 (37%), Gaps = 19/249 (7%)
Query: 344 GRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENG 403
G F R +A +LY + KP + T L++ + + +++ L K++ G
Sbjct: 312 GLFRARRYT-QAFELYANMLKKNIKPDIILYTILIQGLSKAGKIEDAL--KLLSSMPSKG 368
Query: 404 NVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEAN 463
N+V+KAL G + E + M E + + + + G EA
Sbjct: 369 ISPDTYCYNAVIKALCGRGLLEEGRSLQLEMSETESFPDACTHTILICSMCRNGLVREAE 428
Query: 464 EFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNT 523
E +E SG + +LI G C +G+L +A KM G L +
Sbjct: 429 EIFTEIEKSGCSPSVATFNALIDGLCKSGELKEARLLLHKM-------EVGRPASLFLRL 481
Query: 524 YCSKNRAIDACKFVHNCVREY-DL--------KPWHTTYEELIKNLLVQRGFKDALSLLC 574
S NR+ D + ++ Y DL P +Y LI AL LL
Sbjct: 482 SHSGNRSFDTMVESGSILKAYRDLAHFADTGSSPDIVSYNVLINGFCRAGDIDGALKLLN 541
Query: 575 LMKDHGFPP 583
+++ G P
Sbjct: 542 VLQLKGLSP 550
>gi|224113511|ref|XP_002316516.1| predicted protein [Populus trichocarpa]
gi|222865556|gb|EEF02687.1| predicted protein [Populus trichocarpa]
Length = 761
Score = 58.9 bits (141), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 71/318 (22%), Positives = 127/318 (39%), Gaps = 10/318 (3%)
Query: 279 DEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMET 338
DE +AL F A G +K YN + L +E I + ++++EM G ++ T
Sbjct: 370 DEIDRALALFNAALGKG-LKPTVILYNMLIKGLCQEGLILQALQMMNEMSENGCSSDIWT 428
Query: 339 CVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIV--VSKQLDMRLFSKVV 396
V+ + V +A +L A+A P V F ++ KQL M +++
Sbjct: 429 YNLVINGLCKMGCVSDANNLMNDAIAKGYVPDV----FTFNTLIDGYCKQLKMETTIQIL 484
Query: 397 RVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSA 456
+G NSVL L + + + + M E G + + + + L A
Sbjct: 485 NKMWSHGVTPDVITYNSVLNGLSKAVKNEDLMETFETMVEKGCVPNKITYNILTESLCKA 544
Query: 457 GKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYA 516
GK +EA + +D + G + ++I G GDL A F++M E+ SH
Sbjct: 545 GKVNEALDLVDEILNKGITPDTVSFATIISGFANNGDLKGAYQLFRRMGEQYKVSHTTAT 604
Query: 517 IDLLVNTYCSK-NRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCL 575
++++N + K + + F+ + P TY +I + L
Sbjct: 605 YNIMINAFAEKLDLHMGEKLFLE--MGAGGCAPDTYTYRVMIDGFCITGNTDSGYKFLLE 662
Query: 576 MKDHGFPPFVDPFIKYVS 593
M + GF P + F + ++
Sbjct: 663 MIEKGFIPSLTTFGRVIN 680
Score = 43.1 bits (100), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 60/267 (22%), Positives = 102/267 (38%), Gaps = 20/267 (7%)
Query: 322 KVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKI 381
++L+ M S+G ++ V+ F E N EA +L+ + P V+ LL +
Sbjct: 167 RLLNNMVSQGCQLNAVAYCTVVAGFYEENYRVEAYELFNDMLRIGIFPDVSTFNKLLHTL 226
Query: 382 VVSKQLDM--RLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGF 439
++ RL +KV++ G N ++ L G + +L ++ G
Sbjct: 227 CKKGEVQESERLLNKVLK----KGMCSNLFTFNIFIQGLCRKGMLSGAMSMLDSVIREGL 282
Query: 440 IASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAAD 499
+ + L EA +++ + G + + +LI G+C G L A
Sbjct: 283 TPDVVTYNTLICGLCKNSNVVEAEKYLHKLVNGGLEPDGFTYNTLIDGYCKMGMLQNAEK 342
Query: 500 CFQKMVEKEGTSHAGYAIDLLVNTYCS------KNRAIDACKFVHNCVREYDLKPWHTTY 553
Q + K G+ D TYCS +N ID + N LKP Y
Sbjct: 343 ILQGAICK------GFVPDEF--TYCSLINGLCQNDEIDRALALFNAALGKGLKPTVILY 394
Query: 554 EELIKNLLVQRGFKDALSLLCLMKDHG 580
LIK L + AL ++ M ++G
Sbjct: 395 NMLIKGLCQEGLILQALQMMNEMSENG 421
Score = 39.7 bits (91), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 73/342 (21%), Positives = 130/342 (38%), Gaps = 16/342 (4%)
Query: 280 EPKKAL-IFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMET 338
+P KAL +F + E GF KH +Y + LG VL E R +E
Sbjct: 19 DPLKALEMFNKVKREDGF-KHSLLTYKCIIQKLGFHGNFVAMENVLAETRMDIDNSLLEG 77
Query: 339 C-VKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVR 397
+ + + + V+EAVD++E +PSV L +++ ++ F + +
Sbjct: 78 VYIGAMKSYGRKGKVQEAVDVFERMDFYNCEPSV-----LSYNAIMNILVESGYFKQAHK 132
Query: 398 VF--RENGNVLTDAMLNSV-LKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLS 454
VF +N ++ D ++ +K+ R ++L M G ++ +
Sbjct: 133 VFLRMKNVGIVPDVYTFTIRIKSFCRTKRPHSALRLLNNMVSQGCQLNAVAYCTVVAGFY 192
Query: 455 SAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAG 514
+ EA E + M G + L+ C G++ ++ K++ K+G
Sbjct: 193 EENYRVEAYELFNDMLRIGIFPDVSTFNKLLHTLCKKGEVQESERLLNKVL-KKGMCSNL 251
Query: 515 YAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLC 574
+ ++ + C K A + + +RE L P TY LI L +A L
Sbjct: 252 FTFNIFIQGLCRKGMLSGAMSMLDSVIRE-GLTPDVVTYNTLICGLCKNSNVVEAEKYLH 310
Query: 575 LMKDHGFPP---FVDPFIKYVSKSGTSDDAIAFLKGMTSKRF 613
+ + G P + I K G +A L+G K F
Sbjct: 311 KLVNGGLEPDGFTYNTLIDGYCKMGMLQNAEKILQGAICKGF 352
>gi|255582957|ref|XP_002532249.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223528067|gb|EEF30143.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 507
Score = 58.9 bits (141), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 66/289 (22%), Positives = 115/289 (39%), Gaps = 32/289 (11%)
Query: 254 VERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGR 313
+E L N T + DL+ V+ + + K ALIFF W + G V +YN + +LG+
Sbjct: 67 IELALTQCNPTVTEDLILKVLKRHRSDWKPALIFFNWVSKGGKVLMGSGAYNEILDILGK 126
Query: 314 EDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLY----EFAMACKNKP 369
D +VLD M + + ET ++ R++ + V+EA++++ + +
Sbjct: 127 MRRFDELSQVLDIMSKREGLVNEETYRVLVNRYAAAHKVEEAIEIFNTRRDIGLEIDLVS 186
Query: 370 SVNCCTFLLR--------KIVVSKQLDMRLFSKVVRVFRENGNVLTDA------------ 409
N FL R ++ SK D + K + + VL +
Sbjct: 187 FQNLLMFLCRYKHVQIAESLLYSKGKDFGMDIKTMNIVLNGWCVLGNVHEAKRFWKDIIG 246
Query: 410 --------MLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDE 461
+ +KAL G++G KI +AM E + + I L + E
Sbjct: 247 SKCKPDLFTYGTFIKALTKKGKLGTALKIYRAMWEKQCKPDVVICNCIIDALCFKNRVPE 306
Query: 462 ANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGT 510
A E M G + SLIK ++K + +M++K+G+
Sbjct: 307 ALEVFREMSQQGCLPNGATYNSLIKHFSRIRRMEKVYELLDEMLDKKGS 355
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 93/430 (21%), Positives = 171/430 (39%), Gaps = 41/430 (9%)
Query: 109 YKFSDVNDISKQLELSGVVFTHEMVLKVLKNLESSPDEARRFFNWVLEKESERLSSKTYN 168
Y+ S I L T +++LKVLK S A FFNWV + + S YN
Sbjct: 59 YRDSPTRKIELALTQCNPTVTEDLILKVLKRHRSDWKPALIFFNWVSKGGKVLMGSGAYN 118
Query: 169 LMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRNKMTEKFEKEGLESDLEKLKGIFATG 228
+L I+G E ++D+M K+ V + ++ A
Sbjct: 119 EILDILGKMRRFDELSQVLDIMSKREGLVNEETYRVLVNRYA---------------AAH 163
Query: 229 SIDNSIEKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFF 288
++ +IE + R DI G ++ DL V+F N L+ F+ + ++L++
Sbjct: 164 KVEEAIEIFNT------RRDI-GLEI-----DL-VSFQN-LLMFLCRYKHVQIAESLLYS 209
Query: 289 RWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSE 348
+ + +K N VLG RFWK + + K T +K L ++
Sbjct: 210 KGKDFGMDIKTMNIVLNGWC-VLGNVHEAKRFWKDIIGSKCKPDLFTYGTFIKAL---TK 265
Query: 349 RNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTD 408
+ + A+ +Y + KP V C ++ + ++ L +V R + G +
Sbjct: 266 KGKLGTALKIYRAMWEKQCKPDVVICNCIIDALCFKNRVPEAL--EVFREMSQQGCLPNG 323
Query: 409 AMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFR--LSSAGKKDEANEFM 466
A NS++K + RM + ++L M + S M I F L + K +E +
Sbjct: 324 ATYNSLIKHFSRIRRMEKVYELLDEMLDK---KGSCMPDHITFNYLLKALKKPEELPLVL 380
Query: 467 DHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCS 526
+ ME +G + + +++ + ++ D + +M EK G + ++++
Sbjct: 381 ERMERNGCMISTDTYNLILRLYADWDCEERVGDTWNEM-EKLGLGPDRRSYTIMIHWLYE 439
Query: 527 KNRAIDACKF 536
K R DA +
Sbjct: 440 KGRINDALHY 449
>gi|357481045|ref|XP_003610808.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355512143|gb|AES93766.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 1084
Score = 58.9 bits (141), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 76/340 (22%), Positives = 142/340 (41%), Gaps = 32/340 (9%)
Query: 295 GFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKE 354
GFV D+S+Y+ + L +++ + + +EM+ G + T ++ F + ++++
Sbjct: 455 GFVP-DDSTYSKVIGFLCDASKVEKAFSLFEEMKRNGIVPSVYTYTILIDSFCKAGLIQQ 513
Query: 355 AVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDM--RLFSKVVRVFRENGNVLTDAMLN 412
A ++ + P+V T L+ + +KQ+ + LF ++ + V A+++
Sbjct: 514 ARKWFDEMLHKGCTPNVVTYTALIHAYLKAKQMPVADELFEMMLLEGCKPNVVTYTALID 573
Query: 413 SVLKALISVGRMGECNKILKAMEEGGFIASSNMK------------------SKIAFRLS 454
KA G++ + +I M G I SS+M + L
Sbjct: 574 GHCKA----GQIEKACQIYARMR--GDIESSDMDKYFKLDHNNCEGPNVITYGALVDGLC 627
Query: 455 SAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAG 514
A + EA+E +D M A G + ++ ++I G C G L A + F KM E+ G S
Sbjct: 628 KANRVKEAHELLDTMLAHGCEPNQIVYDAVIDGFCKIGKLQDAQEVFTKMSER-GYSPNL 686
Query: 515 YAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLC 574
Y ++ NR +D V + + E P Y E++ L +A L+
Sbjct: 687 YTYSSFIDCLFKDNR-LDLVLKVLSKMLENSCTPNVVIYTEMVDGLCKIGKTDEAYKLML 745
Query: 575 LMKDHGFPPFVDPFIKYV---SKSGTSDDAIAFLKGMTSK 611
M++ G P V + + KSG + + + M SK
Sbjct: 746 KMEEKGCNPNVVTYTAMIDGFGKSGKIEQCLELFRDMCSK 785
Score = 40.4 bits (93), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 42/215 (19%), Positives = 86/215 (40%), Gaps = 4/215 (1%)
Query: 303 SYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFA 362
+Y + S R+ + R ++L M ++G E ++ + + A L++
Sbjct: 316 TYRILLSGCLRKGQLGRCKRILSMMITEGCYPNREIFNSLIHAYCKSRDYSYAYKLFKKM 375
Query: 363 MACKNKPSVNCCTFLLRKIVVSKQLD----MRLFSKVVRVFRENGNVLTDAMLNSVLKAL 418
+ C +P + + +++ + L K + G VL +++ + L
Sbjct: 376 IKCGCQPGYLVYNIFIGSVCSNEEQPSSDILDLVEKAYSEMLDLGVVLNKVNVSNFARCL 435
Query: 419 ISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGD 478
G+ + KI+ M GF+ + SK+ L A K ++A + M+ +G
Sbjct: 436 CGAGKFDQAFKIICEMMGKGFVPDDSTYSKVIGFLCDASKVEKAFSLFEEMKRNGIVPSV 495
Query: 479 KMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHA 513
+ LI C AG + +A F +M+ K T +
Sbjct: 496 YTYTILIDSFCKAGLIQQARKWFDEMLHKGCTPNV 530
>gi|224092436|ref|XP_002309609.1| predicted protein [Populus trichocarpa]
gi|222855585|gb|EEE93132.1| predicted protein [Populus trichocarpa]
Length = 841
Score = 58.9 bits (141), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 64/252 (25%), Positives = 113/252 (44%), Gaps = 24/252 (9%)
Query: 333 EMEMETCVKVLGRF----SERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLD 388
E ++ C+ V+ F + NM++EA D+Y MA K +C T +++ +
Sbjct: 182 EKDIVPCLTVMNIFLSELVKNNMIREARDVYN-KMASKGVKG-DCATI---SVMIRASMR 236
Query: 389 MRLFSKVVRVFRE--NGNVLTDA-----MLNSVLKALISVGRMGECNKILKAMEEGGFIA 441
+ FRE N V DA ++ +V K SV +G +L+ M + G++
Sbjct: 237 EGKLEEAEGWFREAKNKGVELDARAYSIVIEAVCKKPDSVAALG----LLREMRDKGWVP 292
Query: 442 SSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCF 501
+ +++ GK EA + M + G + + +L+KG+C GDLD A + F
Sbjct: 293 HEVIFTRVIGVCMKQGKMLEAVKVKGEMLSCGKPMNVVVATTLMKGYCKQGDLDSALELF 352
Query: 502 QKMVEKE-GTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNL 560
KM E ++ YA+ + +C KN +D ++N ++ D+ P LI+
Sbjct: 353 DKMNENGICPNNVTYAV---IIEWCCKNGNMDKAYEIYNQMKNKDISPTVFNVNSLIRGY 409
Query: 561 LVQRGFKDALSL 572
L R ++A L
Sbjct: 410 LKARSPEEASKL 421
Score = 47.0 bits (110), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 123/621 (19%), Positives = 224/621 (36%), Gaps = 121/621 (19%)
Query: 128 FTHEMVLKVLKNLESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVG--------VHGL 179
T + L N ++ P A +F W +K S ++L I+ L
Sbjct: 62 LTQTQYIDTLLNHQNDPQSALSYFTWASQKRGLIKSVDALCVLLHILTKSTETCGKARNL 121
Query: 180 VQEF----WGLVDVMKKKGYGVASHVRNKMTEKFEKEGLESDLEK----LKGIFATGSID 231
+ F WG V S V ++ E + ESD L T I+
Sbjct: 122 LNRFASDDWG----------PVPSVVVARLIESSRRLDFESDSRVFNYLLNSYVKTKRIN 171
Query: 232 NSIEKVASRICK----------VVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLG--- 278
++++ S I K + S++ +++ R+ RD+ ++ VK +
Sbjct: 172 DAVDCFNSLIEKDIVPCLTVMNIFLSELVKNNMIREARDVYNKMASKGVKGDCATISVMI 231
Query: 279 ------DEPKKALIFFRWAEESGFVKHDESSYN-AMASVLGREDCIDRFWKVLDEMRSKG 331
+ ++A +FR A+ G V+ D +Y+ + +V + D + +L EMR KG
Sbjct: 232 RASMREGKLEEAEGWFREAKNKG-VELDARAYSIVIEAVCKKPDSVAAL-GLLREMRDKG 289
Query: 332 YEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLD--M 389
+ +V+G ++ + EAV + ++C +V T L++ LD +
Sbjct: 290 WVPHEVIFTRVIGVCMKQGKMLEAVKVKGEMLSCGKPMNVVVATTLMKGYCKQGDLDSAL 349
Query: 390 RLFSK---------------VVRVFRENGNV-----LTDAM-----------LNSVLKAL 418
LF K ++ +NGN+ + + M +NS+++
Sbjct: 350 ELFDKMNENGICPNNVTYAVIIEWCCKNGNMDKAYEIYNQMKNKDISPTVFNVNSLIRGY 409
Query: 419 ISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGD 478
+ E +K+ G S +++ L GK EA + M G
Sbjct: 410 LKARSPEEASKLFDEAVACGIANVFTYNSLLSW-LCKEGKMSEACSIWEKMVRKGVRPSV 468
Query: 479 KMWVSLIKGHCVAGDLDKAADCFQKMVEK------------------------------- 507
+ ++I GHC GD+D A F +M+EK
Sbjct: 469 VSYNNMILGHCQQGDMDSANGVFVEMLEKGLKPNLITYSVLMDGYFKKGDTEYAFGLYDR 528
Query: 508 ---EGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQR 564
E + + + ++++N C R ++ + V+E P TY +I + +
Sbjct: 529 MRGENIAPSDFTCNIIINGLCKAGRTSESQDRLKKLVQE-GFIPTCMTYNCIIDGFVKEG 587
Query: 565 GFKDALSLLCLMKDHGFPPFVDPFIKYVS---KSGTSDDAIAFLKGMTSKRFPSMSVVLC 621
AL++ M G P V + ++ KS D A+ + M +K V C
Sbjct: 588 SVNSALAVYTEMCKIGVSPNVFTYTNLINGFCKSNNMDLALKVMDEMKNKGIELDVTVYC 647
Query: 622 -LFAAFFQARRHSEAQDLLSK 641
L F + A LLS+
Sbjct: 648 ALIDGFCRKGDMVNASQLLSE 668
>gi|357521641|ref|XP_003631109.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355525131|gb|AET05585.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 687
Score = 58.9 bits (141), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 50/210 (23%), Positives = 90/210 (42%), Gaps = 13/210 (6%)
Query: 234 IEKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEE 293
+ V I + ++ W D ++QL++L + + + V V+ K +KA +FF WA
Sbjct: 168 MRNVIGNIYRTLKYSSW-DSAQQQLQNLPLKWDSYTVNQVL-KSHPPMEKAWLFFNWASR 225
Query: 294 SGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVK 353
KHD+ +Y M + G I V ++M KG +++ T ++ S V
Sbjct: 226 LKGFKHDQFTYTTMLDIFGEAGRISSMKHVFNQMHEKGIKIDSVTYTSMMHWLSTSGNVD 285
Query: 354 EAVDLYEFAMACKNKPSVNCC--TFLLRKIVVSKQLDMRLFSKVVRVFRE---NGNVLTD 408
EA+ L++ S CC T + + D + +++E NG V
Sbjct: 286 EAIALWD------EMKSKGCCYPTVVSYTAFIKILFDNHRVKEATAIYKEMLHNGCVPNC 339
Query: 409 AMLNSVLKALISVGRMGECNKILKAMEEGG 438
++ LI+ G+ E +I + M+E G
Sbjct: 340 YTYTVLMDHLIASGKCKEALEIFQKMQEAG 369
>gi|115455297|ref|NP_001051249.1| Os03g0746400 [Oryza sativa Japonica Group]
gi|113549720|dbj|BAF13163.1| Os03g0746400, partial [Oryza sativa Japonica Group]
Length = 613
Score = 58.9 bits (141), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 82/396 (20%), Positives = 152/396 (38%), Gaps = 55/396 (13%)
Query: 262 NVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFW 321
+V + LV ++ + ++ A FF W G H SY+ M +LG+ D W
Sbjct: 186 SVRVTGCLVDKILTRFSNDWVAAFGFFMWVGTQGGYCHCADSYDLMVDILGKFKQFDLMW 245
Query: 322 KVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYE----FAMACKNKPSVNCCTFL 377
++++M G M + T KV+ R + + EA+D + F + K+ ++N
Sbjct: 246 GLINQMVEVGGLMSLMTMTKVMRRLAGASRWTEAIDAFHKMDRFGVV-KDTKAMN----- 299
Query: 378 LRKIVVSKQLDMRLFSKVVRVFRE-NGNVLTDA-MLNSVLKALISVGRMGECNKILKAME 435
+++ R + VF+E G + D N+++ + E ++ M+
Sbjct: 300 ---VLLDTLCKERSVKRARGVFQELRGTIPPDENSFNTLVHGWCKARMLKEALDTMEEMK 356
Query: 436 EGGFIAS------------------------SNMKSK-----------IAFRLSSAGKKD 460
+ GF S M+ + + L AG+
Sbjct: 357 QHGFSPSVVTYTSLVEAYCMEKDFQTVYALLDEMRKRRCPPNVVTYTILMHALGKAGRTR 416
Query: 461 EANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLL 520
EA + D ++ G + SLI AG L+ A ++M G + + L
Sbjct: 417 EALDTFDKLKEDGVAPDASFYNSLIYILGRAGRLEDAYSVVEEM-RTTGIAPNVTTFNTL 475
Query: 521 VNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHG 580
++ C ++A +A K + + E P TY L+K ++ K L L+C M
Sbjct: 476 ISAACDHSQAENALKLLVK-MEEQSCNPDIKTYTPLLKLCCKRQWVKILLFLVCHMFRKD 534
Query: 581 FPPFVDPF---IKYVSKSGTSDDAIAFLKGMTSKRF 613
P + + ++ ++G + FL+ M SK F
Sbjct: 535 ISPDFSTYTLLVSWLCRNGKVAQSCLFLEEMVSKGF 570
Score = 44.7 bits (104), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 64/150 (42%), Gaps = 7/150 (4%)
Query: 496 KAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEE 555
+A D F KM ++ G A+++L++T C K R++ + V +R + P ++
Sbjct: 278 EAIDAFHKM-DRFGVVKDTKAMNVLLDTLC-KERSVKRARGVFQELRG-TIPPDENSFNT 334
Query: 556 LIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPFIKYVSKSGTSDD---AIAFLKGMTSKR 612
L+ R K+AL + MK HGF P V + V D A L M +R
Sbjct: 335 LVHGWCKARMLKEALDTMEEMKQHGFSPSVVTYTSLVEAYCMEKDFQTVYALLDEMRKRR 394
Query: 613 FPSMSVVLC-LFAAFFQARRHSEAQDLLSK 641
P V L A +A R EA D K
Sbjct: 395 CPPNVVTYTILMHALGKAGRTREALDTFDK 424
>gi|326505926|dbj|BAJ91202.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 669
Score = 58.9 bits (141), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 50/231 (21%), Positives = 100/231 (43%), Gaps = 9/231 (3%)
Query: 415 LKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGS 474
L+ LI+ + E ++++ G + +K+ L G+ +A + EASG+
Sbjct: 46 LRRLIARDDLAEAARLVETSSSRGEAPDVYLCTKLIRNLCRRGRTSDAARVLRTAEASGA 105
Query: 475 DVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDAC 534
V + +L+ G+C G LD A ++++ Y ++ C + R DA
Sbjct: 106 PVDVFAYNTLVAGYCRYGRLDAA----RRLIASMPVPPDAYTYTPIIRGLCDRGRVGDAL 161
Query: 535 KFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFV---DPFIKY 591
+ + + + +P TY L++ + GF +A+++L M+ G P + + I
Sbjct: 162 ALLDD-MLQRGCQPSVVTYTVLLEAVCKSSGFGEAMNVLDEMRAKGCTPNIVTYNVIING 220
Query: 592 VSKSGTSDDAIAFLKGMTSKRF-PSMSVVLCLFAAFFQARRHSEAQDLLSK 641
+ + G DDA L ++S F P + + ARR + + L ++
Sbjct: 221 MCREGRVDDAKEILNRLSSYGFQPDIVSYTTVLKGLCAARRWDDVKVLFAE 271
Score = 58.5 bits (140), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 66/342 (19%), Positives = 138/342 (40%), Gaps = 9/342 (2%)
Query: 303 SYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFA 362
+Y + + + VLDEMR+KG + T ++ V +A ++
Sbjct: 178 TYTVLLEAVCKSSGFGEAMNVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDAKEILNRL 237
Query: 363 MACKNKPSVNCCTFLLRKIVVSKQLD--MRLFSKVVRVFRENGNVLTDAMLNSVLKALIS 420
+ +P + T +L+ + +++ D LF+++V + V + + +++
Sbjct: 238 SSYGFQPDIVSYTTVLKGLCAARRWDDVKVLFAEMV----DKKCVPNEVTFDMLVRFFCR 293
Query: 421 VGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKM 480
G + ++L+ M + G ++ + + + + G+ D+A +F+++M G +
Sbjct: 294 GGMVERAIQVLQQMSQHGCTPNTTLCNIVINAICKQGRVDDAYDFLNNMGMYGCNPDTIS 353
Query: 481 WVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNC 540
+ ++++G C AG + A + +MV K + + + C K A K +
Sbjct: 354 YTTVLRGLCRAGRWEHAKELLPEMVRKNCPPNE-VTFNTFICILCQKGLIEQAIKLIE-L 411
Query: 541 VREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPFIKYVSKSGTSDD 600
+ EY TY L+ VQ AL L + + + + D
Sbjct: 412 MPEYGCSVGIVTYNALVHGFCVQGRVDSALELFNNLPCEPNTITYTTLLTGLCHAERLDA 471
Query: 601 AIAFLKGMTSKRFPSMSVVLCLFAAFF-QARRHSEAQDLLSK 641
A L GM K P +V + +FF Q EA +L+++
Sbjct: 472 AAELLAGMIQKDCPLNAVTFNVLVSFFCQKGFVEEAMELVNQ 513
Score = 56.6 bits (135), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 64/307 (20%), Positives = 124/307 (40%), Gaps = 11/307 (3%)
Query: 343 LGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFREN 402
L R R+ + EA L E + + P V CT L+R + ++ ++V+R +
Sbjct: 46 LRRLIARDDLAEAARLVETSSSRGEAPDVYLCTKLIRNL--CRRGRTSDAARVLRTAEAS 103
Query: 403 GNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEA 462
G + N+++ GR+ +++ +M + + I L G+ +A
Sbjct: 104 GAPVDVFAYNTLVAGYCRYGRLDAARRLIASMP---VPPDAYTYTPIIRGLCDRGRVGDA 160
Query: 463 NEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVN 522
+D M G + L++ C + +A + +M K G + ++++N
Sbjct: 161 LALLDDMLQRGCQPSVVTYTVLLEAVCKSSGFGEAMNVLDEMRAK-GCTPNIVTYNVIIN 219
Query: 523 TYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFP 582
C + R DA K + N + Y +P +Y ++K L R + D L M D
Sbjct: 220 GMCREGRVDDA-KEILNRLSSYGFQPDIVSYTTVLKGLCAARRWDDVKVLFAEMVDKKCV 278
Query: 583 P---FVDPFIKYVSKSGTSDDAIAFLKGMTSKRF-PSMSVVLCLFAAFFQARRHSEAQDL 638
P D +++ + G + AI L+ M+ P+ ++ + A + R +A D
Sbjct: 279 PNEVTFDMLVRFFCRGGMVERAIQVLQQMSQHGCTPNTTLCNIVINAICKQGRVDDAYDF 338
Query: 639 LSKCPRY 645
L+ Y
Sbjct: 339 LNNMGMY 345
Score = 39.7 bits (91), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 44/195 (22%), Positives = 85/195 (43%), Gaps = 2/195 (1%)
Query: 303 SYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFA 362
+Y + + L + +D ++L M K + T ++ F ++ V+EA++L
Sbjct: 455 TYTTLLTGLCHAERLDAAAELLAGMIQKDCPLNAVTFNVLVSFFCQKGFVEEAMELVNQM 514
Query: 363 MACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVG 422
M P++ LL I +K + +++ G L +SV+ L
Sbjct: 515 MEHGCTPNLITFNTLLDGI--TKDCNSEEALELLHGLVSKGVSLDTITYSSVVDVLSRED 572
Query: 423 RMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWV 482
R E ++L A+++ G M +KI F L + D+A +F +M ++G + ++
Sbjct: 573 RTEEAIQMLHAVQDMGMRPKVGMYNKILFALCKRCETDQAIDFFAYMVSNGCMPNESTYI 632
Query: 483 SLIKGHCVAGDLDKA 497
LI+G G L +A
Sbjct: 633 ILIEGLAHEGLLKEA 647
>gi|297738205|emb|CBI27406.3| unnamed protein product [Vitis vinifera]
Length = 821
Score = 58.9 bits (141), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 75/350 (21%), Positives = 133/350 (38%), Gaps = 52/350 (14%)
Query: 303 SYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFA 362
+Y + S L + ID +L EM G + ++ T R V+EA++LYE
Sbjct: 412 TYTVLLSSLCKSGRIDEAVILLHEMEVIGLKPDLLT--------YSRGAVEEAIELYEEM 463
Query: 363 MACKNKPSVNCCTFLLRKIVVSKQLD--MRLFSKVVRVFRENGNVLTDAMLNSVLKALIS 420
+ + P+ C+ ++ + + F V + +L + M++ K
Sbjct: 464 CSKRIYPNSFVCSAIISGLFEKGAISEAQMYFDSVTKSDVAEEIILYNIMIDGYAK---- 519
Query: 421 VGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKM 480
+G +GE + K + E G + + + + GK EA + +D ++ G
Sbjct: 520 LGNIGEAVRSYKQIIEKGISPTIVTFNSLIYGFCKKGKLAEAVKLLDTIKVHGLVPTSVT 579
Query: 481 WVSLIKGHCVAGDLDKAADCFQKM------------------VEKEGTSHAG-------Y 515
+ +L+ G+C GD+ D +M + KEG H Y
Sbjct: 580 YTTLMNGYCEEGDMHSMFDMLHEMEAKAIKPTQITYTVVVKGLCKEGRLHESVQLLKYMY 639
Query: 516 AIDL---------LVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGF 566
A L ++ ++C + A + +HN + ++ L+P TY LI L V
Sbjct: 640 ARGLFPDQITYNTVIQSFCKAHDLQKAFQ-LHNQMLQHSLQPSPVTYNVLINGLCVYGNL 698
Query: 567 KDALSLLCLMKDHGF---PPFVDPFIKYVSKSGTSDDAIAFLKGMTSKRF 613
KDA LL ++D IK G +A+ F M + F
Sbjct: 699 KDADRLLVTLQDQSIRLTKVAYTTIIKAHCAKGDVQNALVFFHQMVERGF 748
Score = 52.8 bits (125), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 78/364 (21%), Positives = 151/364 (41%), Gaps = 23/364 (6%)
Query: 282 KKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVK 341
++AL F E G V+ D +YN +A+ I WKV+ M G ++ T
Sbjct: 322 EEALEFTNDMENHG-VEPDIVTYNILANGFRILGLISGAWKVVQRMLLNGLNPDLVTYTI 380
Query: 342 VLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLD-MRLFSKVVRVFR 400
++ + ++E+ L E ++ K S+ T LL + S ++D + + V
Sbjct: 381 LICGHCQMGNIEESFKLKEKMLSQGLKLSIVTYTVLLSSLCKSGRIDEAVILLHEMEVIG 440
Query: 401 ENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKD 460
++LT S G + E ++ + M +S + S I L G
Sbjct: 441 LKPDLLT-----------YSRGAVEEAIELYEEMCSKRIYPNSFVCSAIISGLFEKGAIS 489
Query: 461 EANEFMDHMEASGSDVGDK--MWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAID 518
EA + D + SDV ++ ++ +I G+ G++ +A +++++EK G S +
Sbjct: 490 EAQMYFD--SVTKSDVAEEIILYNIMIDGYAKLGNIGEAVRSYKQIIEK-GISPTIVTFN 546
Query: 519 LLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKD 578
L+ +C K + +A K + + ++ + L P TY L+ + +L M+
Sbjct: 547 SLIYGFCKKGKLAEAVKLL-DTIKVHGLVPTSVTYTTLMNGYCEEGDMHSMFDMLHEMEA 605
Query: 579 HGFPPFVDPF---IKYVSKSGTSDDAIAFLKGMTSK-RFPSMSVVLCLFAAFFQARRHSE 634
P + +K + K G +++ LK M ++ FP + +F +A +
Sbjct: 606 KAIKPTQITYTVVVKGLCKEGRLHESVQLLKYMYARGLFPDQITYNTVIQSFCKAHDLQK 665
Query: 635 AQDL 638
A L
Sbjct: 666 AFQL 669
Score = 49.3 bits (116), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 66/177 (37%), Gaps = 2/177 (1%)
Query: 407 TDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFM 466
T V+K L GR+ E ++LK M G + + A +A +
Sbjct: 611 TQITYTVVVKGLCKEGRLHESVQLLKYMYARGLFPDQITYNTVIQSFCKAHDLQKAFQLH 670
Query: 467 DHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCS 526
+ M + LI G CV G+L K AD ++ + A ++ +C+
Sbjct: 671 NQMLQHSLQPSPVTYNVLINGLCVYGNL-KDADRLLVTLQDQSIRLTKVAYTTIIKAHCA 729
Query: 527 KNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPP 583
K +A F H V E + Y +I L + DA C+M HG PP
Sbjct: 730 KGDVQNALVFFHQMV-ERGFEVSIRDYSAVINRLCKRNLITDAKFFFCMMLTHGIPP 785
>gi|255561437|ref|XP_002521729.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223539120|gb|EEF40716.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 629
Score = 58.9 bits (141), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 85/402 (21%), Positives = 155/402 (38%), Gaps = 73/402 (18%)
Query: 283 KALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEM-RSKGYEMEMETCVK 341
KAL F+WA H +S+Y A+ L D +++LDEM + G + E +
Sbjct: 54 KALQTFKWASNLPKFTHSQSTYRALIQKLCAFHRFDTVYQLLDEMPHAIGSPPDEEIFLT 113
Query: 342 VLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIV----------VSKQL---- 387
V+ M+ + + + PS+ +L +V KQ+
Sbjct: 114 VIRGLGRARMIPHVIKVLDLISKFGKNPSLKIFNSILDVLVKVDIDVAREFYRKQMMGSG 173
Query: 388 ---DMRLFS----------------KVVRVFRENGNVLTDAMLNSVLKALISVGRMGECN 428
D F+ ++++V + G + N++L AL G++G
Sbjct: 174 VQGDDYTFAILMKGLCLTNRIGDGFRLLQVMKSRGVKPNAVVYNTLLHALCKNGKVGRAR 233
Query: 429 KILKAMEEG-------------------------------GFIASSNMKSKIAFRLSSAG 457
++ +EE GF+ +K+ L +AG
Sbjct: 234 SLMDEIEEPNDVTFNVLIAAYCKEENLVQALVLLEKSFSLGFVPDVVTMTKVVEILCNAG 293
Query: 458 KKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAI 517
+ EA E ++ +E G V + +L++G C G + K A F K +E++G
Sbjct: 294 RVTEAVEMLERVEYKGGLVDVVAYNTLLRGFCRLGKI-KVAHRFLKEMERKGCLPNVETY 352
Query: 518 DLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMK 577
++L++ +C D + N ++ + TY+ LIK L ++ L +L LM+
Sbjct: 353 NILISGFCDSG-MFDMALDMFNDMKTDGISWNFDTYDTLIKGLFFGGRIEEGLKILELME 411
Query: 578 DH--GFPPFVDPF---IKYVSKSGTSDDAIAFLKGMTSKRFP 614
+ G + P+ + + K D+A+ FL M K FP
Sbjct: 412 ESKGGSGGRISPYNSVLYGLYKKNMWDEALEFLMKM-EKLFP 452
Score = 45.8 bits (107), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 63/286 (22%), Positives = 110/286 (38%), Gaps = 8/286 (2%)
Query: 300 DESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLY 359
D +YN + R I + L EM KG +ET ++ F + M A+D++
Sbjct: 313 DVVAYNTLLRGFCRLGKIKVAHRFLKEMERKGCLPNVETYNILISGFCDSGMFDMALDMF 372
Query: 360 EFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFREN--GNVLTDAMLNSVLKA 417
+ + L++ + +++ L K++ + E+ G+ + NSVL
Sbjct: 373 NDMKTDGISWNFDTYDTLIKGLFFGGRIEEGL--KILELMEESKGGSGGRISPYNSVLYG 430
Query: 418 LISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVG 477
L E + L ME+ + +S G A D M G
Sbjct: 431 LYKKNMWDEALEFLMKMEK--LFPRAVDRSLRILGFCEKGAVKNAKMVFDQMINEGGTPN 488
Query: 478 DKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFV 537
++ L+ G C G+L +A + +MV G + L++ +C + + A K +
Sbjct: 489 ILVYDCLVHGFCQEGNLREAFELMNEMV-GHGYFLVASGFNALIHGFCGQGKDESALKLL 547
Query: 538 HNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPP 583
+ V P TY LI L + F+ ALS+ M + G P
Sbjct: 548 DDMVGR-GCVPDRGTYSPLIDALCRKGNFQKALSIFNQMIEKGITP 592
>gi|225451899|ref|XP_002279045.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g38730-like [Vitis vinifera]
Length = 590
Score = 58.9 bits (141), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 68/317 (21%), Positives = 123/317 (38%), Gaps = 29/317 (9%)
Query: 287 FFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGR- 345
FF+W E + KH S M L + +L+ + + Y + + + + R
Sbjct: 61 FFKWVESNLNHKHSLQSSWTMIHTLAKHKQFKTAQNLLERIAVRDY-LSSPSVLNAVVRI 119
Query: 346 -----------------FSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLD 388
++ M ++A+ ++E KP ++ CT LL + ++ +
Sbjct: 120 HDDPDSNSQILSWLVIFYANSRMTQDAIQVFEHMRVHGFKPHLHACTVLLNSLAKARLTN 179
Query: 389 M--RLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMK 446
M +++ K+VRV G V + N ++ A G + + ++L ME
Sbjct: 180 MVWKVYKKMVRV----GVVPNIHIFNVLIHACCKSGDVEKAEQLLNEMESRFIFPDLFTY 235
Query: 447 SKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVE 506
+ + G EA D ME G + SLI G C G + +A F++ +
Sbjct: 236 NTLISLYCKKGMHYEALGIQDRMERGGVSPDIVTYNSLIYGFCREGRMREALRLFRE-IN 294
Query: 507 KEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGF 566
+H Y L++ YC N +A + + + L P TY +++ L +
Sbjct: 295 GATPNHVTYTT--LIDGYCRVNDLEEALR-LREVMEVEGLHPGVVTYNSILRKLCEEGKI 351
Query: 567 KDALSLLCLMKDHGFPP 583
KDA LL M + P
Sbjct: 352 KDANRLLNEMSERKVEP 368
Score = 48.5 bits (114), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 70/345 (20%), Positives = 140/345 (40%), Gaps = 16/345 (4%)
Query: 304 YNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAM 363
+N + + +++ ++L+EM S+ ++ T ++ + ++ M EA+ + +
Sbjct: 200 FNVLIHACCKSGDVEKAEQLLNEMESRFIFPDLFTYNTLISLYCKKGMHYEALGIQDRME 259
Query: 364 ACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRE-NGNVLTDAMLNSVLKALISVG 422
P + L+ ++ MR + +R+FRE NG +++ V
Sbjct: 260 RGGVSPDIVTYNSLIYGF--CREGRMR---EALRLFREINGATPNHVTYTTLIDGYCRVN 314
Query: 423 RMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWV 482
+ E ++ + ME G + I +L GK +AN ++ M + +
Sbjct: 315 DLEEALRLREVMEVEGLHPGVVTYNSILRKLCEEGKIKDANRLLNEMSERKVEPDNVTCN 374
Query: 483 SLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVR 542
+LI +C GD+ A +KM+E G + L++ +C + A +F+ +
Sbjct: 375 TLINAYCKIGDMGSAMKVKKKMLEA-GLKPDQFTFKALIHGFCKLHEVDSAKEFLFEML- 432
Query: 543 EYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVD-----PFIKYVSKSGT 597
+ P ++TY L+ + Q + + L + G FVD I+ + K
Sbjct: 433 DAGFSPSYSTYSWLVDSYYDQDNKEAVIRLPDELSRKGL--FVDISVYRALIRRLCKIDK 490
Query: 598 SDDAIAFLKGMTSKRFPSMSVVLCLFA-AFFQARRHSEAQDLLSK 641
+ A M K SVV A A+F+A + A D+L +
Sbjct: 491 IESAERIFTLMQGKGMKGDSVVYTSLAYAYFKAGKAIAASDMLDE 535
>gi|255586858|ref|XP_002534039.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223525946|gb|EEF28343.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 634
Score = 58.9 bits (141), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 88/438 (20%), Positives = 177/438 (40%), Gaps = 61/438 (13%)
Query: 258 LRDLNVTFSNDLVKFVVDKLGDEPK--KALIFFRWAEESGFVKHDESSYNAMASVLGRED 315
+RD ++FS + V+ + K +AL F ++ G++ D ++ + +
Sbjct: 1 MRDQGLSFSKYTLTPVLQVYCNAGKFDEALNVFNEIQDHGWL--DAYVFSILVLSFSKWG 58
Query: 316 CIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLY----EFAMA------- 364
+D+ ++ +++M + + + +T ++ F +++ V + V L+ ++ ++
Sbjct: 59 QVDKSFEFIEKMEEQNFRLNEKTFCNLIHGFVKQSRVDKGVQLFYKMQKYGLSPDISLYD 118
Query: 365 ------CKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENG-------------NV 405
C NK + ++ Q D+ + SK++ F E G N+
Sbjct: 119 VLIGGFCSNKKLDKALSLYAEMKMLKIQPDIGVVSKLISSFPEEGKLIDILEETLEDMNI 178
Query: 406 LTDAML-NSVLKALISVGRMGECNKILKAMEEGGFIASSNMK--------------SKIA 450
T +L NSVL +L++ G + + +L+ M G K S +
Sbjct: 179 ETQTLLCNSVLSSLVNSGLIDKACCLLRNMMGNGDDDDVQYKLFRDEKIRPNTASFSIVI 238
Query: 451 FRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGT 510
L A K D A M G + ++ +LI G C + L+++ ++M E+ G
Sbjct: 239 NGLMQACKLDLAVCLFQDMAEIGCNRDLLLYNNLINGLCNSDRLEESYKLLKEM-EESGF 297
Query: 511 SHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDAL 570
+ ++ + C + A V +R Y +PW Y L++ L +A
Sbjct: 298 KPTQFTLNSIFGCLCKRQDVSGALDLVKK-MRLYGCEPWVKHYTLLVRKLCKHGKAAEAS 356
Query: 571 SLLCLMKDHGFPPFVDPFIKYVSKSG------TSDDAIAFLKGMTSK-RFPSMSVVLCLF 623
L M GFPP + I Y + G D A+ K ++++ R P + L
Sbjct: 357 IFLTDMVQEGFPPNI---IAYSALLGGLIEVQEVDQALKLFKDISARGRCPDVIAYNILM 413
Query: 624 AAFFQARRHSEAQDLLSK 641
++A R EA++L ++
Sbjct: 414 KGLYEAHRTEEARNLFNE 431
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 74/315 (23%), Positives = 127/315 (40%), Gaps = 14/315 (4%)
Query: 252 DDVERQL-RDLNVTFSNDLVKFVVDKLGDEPKK--ALIFFRWAEESGFVKHDESSYNAMA 308
DDV+ +L RD + + V++ L K A+ F+ E G D YN +
Sbjct: 215 DDVQYKLFRDEKIRPNTASFSIVINGLMQACKLDLAVCLFQDMAEIG-CNRDLLLYNNLI 273
Query: 309 SVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNK 368
+ L D ++ +K+L EM G++ T + G +R V A+DL + +
Sbjct: 274 NGLCNSDRLEESYKLLKEMEESGFKPTQFTLNSIFGCLCKRQDVSGALDLVKKMRLYGCE 333
Query: 369 PSVNCCTFLLRKIVV-SKQLDMRLFSKVVRVFREN--GNVLTDAMLNSVLKALISVGRMG 425
P V T L+RK+ K + +F + + +E N++ +++L LI V +
Sbjct: 334 PWVKHYTLLVRKLCKHGKAAEASIF--LTDMVQEGFPPNIIA---YSALLGGLIEVQEVD 388
Query: 426 ECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLI 485
+ K+ K + G + + L A + +EA + M G + LI
Sbjct: 389 QALKLFKDISARGRCPDVIAYNILMKGLYEAHRTEEARNLFNEMVMKGLIPSVVTYNLLI 448
Query: 486 KGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYD 545
G C G +D A +C M KE + + L++ C R DA + N +R
Sbjct: 449 DGWCKNGCIDDAMNCLCSMSAKEREPNV-FTYTTLIDGLCKAGRPDDAV-MLWNEMRRRG 506
Query: 546 LKPWHTTYEELIKNL 560
+P + I L
Sbjct: 507 CRPNRVAFMGFIHGL 521
>gi|449511130|ref|XP_004163870.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09900-like [Cucumis sativus]
Length = 847
Score = 58.9 bits (141), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 98/485 (20%), Positives = 177/485 (36%), Gaps = 79/485 (16%)
Query: 134 LKVLKNLESSPDE--ARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLVDVMK 191
L+V L S DE A RFF W R S Y +ML I+ L Q ++ +M
Sbjct: 214 LQVCAVLLSQEDERNALRFFYWADRLWRYRHDSSVYLVMLEILSKTKLCQGAKRILRLMT 273
Query: 192 KKGYGVASHVRNKMTEKFEKEGLESDLEKLKGIFATGSIDNSIEKVASRICKVVRSDIWG 251
++ + + + + G D K+ + ++
Sbjct: 274 RRRIQLCPEAFGFVMVSYSRAGRLRDAMKVLTLMQKAGVEP------------------- 314
Query: 252 DDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFV--KHDESSYNAMAS 309
N++ N + +V +G+E KKAL R+AE + + +YN +
Sbjct: 315 ----------NLSICNTAIHILV--MGNELKKAL---RFAERMVLIGIAPNVVTYNCLIK 359
Query: 310 VLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKP 369
+D+ +++D+M SKG + + V+G + E
Sbjct: 360 GYCNVHQVDQAMELIDQMPSKGCSPDKVSYYTVMGLLCRDKRLNE--------------- 404
Query: 370 SVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNK 429
+R+++ Q D +L V NS+++ L G E +
Sbjct: 405 --------IRELIKKMQTDSKLLPDHV-------------TYNSLIQMLSKHGHGDEALE 443
Query: 430 ILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHC 489
IL+ E+ F S I GK +A E + M + G D + S++ G C
Sbjct: 444 ILQEAEKLRFKVDKVEYSAIVHAYCKEGKIQKAKELVSEMFSKGCDPDVVTYTSVLDGFC 503
Query: 490 VAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPW 549
G LD+A Q+M + +A +N C ++++A K ++ E+ P
Sbjct: 504 RIGKLDQAKKMMQQMYKHHCKPNA-VTYTTFLNGLCRNGKSLEARKMMNMSEEEW-WTPN 561
Query: 550 HTTYEELIKNLLVQRGFKDALSLLCLMKDHGF---PPFVDPFIKYVSKSGTSDDAIAFLK 606
TY ++ L + +A ++ M GF P ++ + + + G +A LK
Sbjct: 562 AITYSVVVHGLRREGKLNEACDVVREMIGKGFFPNPVEINLLVHSLCRDGKPREANQLLK 621
Query: 607 GMTSK 611
+K
Sbjct: 622 ECMNK 626
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 85/440 (19%), Positives = 175/440 (39%), Gaps = 42/440 (9%)
Query: 242 CKVVR-SDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHD 300
CK+++ S W E +LR L + + V V+ DE + AL FF WA+ +HD
Sbjct: 187 CKLIQLSSSWNRKFEGELRYLVRSLNPLQVCAVLLSQEDE-RNALRFFYWADRLWRYRHD 245
Query: 301 ESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYE 360
S Y M +L + ++L M + ++ E V+ +S +++A+ +
Sbjct: 246 SSVYLVMLEILSKTKLCQGAKRILRLMTRRRIQLCPEAFGFVMVSYSRAGRLRDAMKVLT 305
Query: 361 FAMACKNKPSVNCCTFLLRKIVVSKQLDMRL-FSKVVRVFRENGNVLT------------ 407
+P+++ C + +V+ +L L F++ + + NV+T
Sbjct: 306 LMQKAGVEPNLSICNTAIHILVMGNELKKALRFAERMVLIGIAPNVVTYNCLIKGYCNVH 365
Query: 408 ---------DAMLN-----------SVLKALISVGRMGECNKILKAME-EGGFIASSNMK 446
D M + +V+ L R+ E +++K M+ + +
Sbjct: 366 QVDQAMELIDQMPSKGCSPDKVSYYTVMGLLCRDKRLNEIRELIKKMQTDSKLLPDHVTY 425
Query: 447 SKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVE 506
+ + LS G DEA E + E V + +++ +C G + KA + +M
Sbjct: 426 NSLIQMLSKHGHGDEALEILQEAEKLRFKVDKVEYSAIVHAYCKEGKIQKAKELVSEMFS 485
Query: 507 KEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGF 566
K G +++ +C + +D K + + ++ KP TY + L
Sbjct: 486 K-GCDPDVVTYTSVLDGFCRIGK-LDQAKKMMQQMYKHHCKPNAVTYTTFLNGLCRNGKS 543
Query: 567 KDALSLLCLMKDHGFPPFVDPF---IKYVSKSGTSDDAIAFLKGMTSKR-FPSMSVVLCL 622
+A ++ + ++ + P + + + + G ++A ++ M K FP+ + L
Sbjct: 544 LEARKMMNMSEEEWWTPNAITYSVVVHGLRREGKLNEACDVVREMIGKGFFPNPVEINLL 603
Query: 623 FAAFFQARRHSEAQDLLSKC 642
+ + + EA LL +C
Sbjct: 604 VHSLCRDGKPREANQLLKEC 623
Score = 47.8 bits (112), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 70/284 (24%), Positives = 115/284 (40%), Gaps = 16/284 (5%)
Query: 278 GDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEME 337
GDE AL + AE+ F K D+ Y+A+ +E I + +++ EM SKG + ++
Sbjct: 438 GDE---ALEILQEAEKLRF-KVDKVEYSAIVHAYCKEGKIQKAKELVSEMFSKGCDPDVV 493
Query: 338 TCVKVLGRFSERNMVKEAVDLYEFAMACKNKP-SVNCCTFLLRKIVVSKQLDMRLFSKVV 396
T VL F + +A + + KP +V TFL K L+ R K++
Sbjct: 494 TYTSVLDGFCRIGKLDQAKKMMQQMYKHHCKPNAVTYTTFLNGLCRNGKSLEAR---KMM 550
Query: 397 RVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSA 456
+ E + V+ L G++ E +++ M GF + + + L
Sbjct: 551 NMSEEEWWTPNAITYSVVVHGLRREGKLNEACDVVREMIGKGFFPNPVEINLLVHSLCRD 610
Query: 457 GKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMV---EKEGTSHA 513
GK EAN+ + G V + ++I G C DL+ A M + T
Sbjct: 611 GKPREANQLLKECMNKGCAVNVVNFTTVIHGFCQKDDLEAALSLLDDMYLCNKHPDTVTY 670
Query: 514 GYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELI 557
ID L T +R +A + +R+ L P TY +I
Sbjct: 671 TALIDALAKT----DRIEEATELTMKMLRQ-GLVPSPVTYRSVI 709
>gi|242044666|ref|XP_002460204.1| hypothetical protein SORBIDRAFT_02g024500 [Sorghum bicolor]
gi|241923581|gb|EER96725.1| hypothetical protein SORBIDRAFT_02g024500 [Sorghum bicolor]
Length = 637
Score = 58.9 bits (141), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 78/389 (20%), Positives = 146/389 (37%), Gaps = 20/389 (5%)
Query: 184 WGLVDVMKKKGYGVASHVRNKMTEKFEKEGLESDLEKLKGIFATGSIDNSIEKVASRICK 243
W L D M ++G + N + +G + +++ ID ++ S IC
Sbjct: 163 WELFDEMLRRGMVPSVVTYNTLINACRYQGAVAKAQEMWDQMVARQIDPNVITYTSMICV 222
Query: 244 VVRSDIWGDD-------VERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGF 296
+ GD E +R T++ V GD+ A + ++ SG
Sbjct: 223 LCEEGCIGDAERLFDAMKEAGMRPNQYTYN---VLMSGHCQGDDVNSAFVLYQELLNSGL 279
Query: 297 VKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAV 356
+ + + + + + +M G + ++ +EA+
Sbjct: 280 IP-NAVVFTTLIDGFCKAKRFSEAKDMFRDMPRFGVAPTVPVYNSLMDGAFRSGDAQEAL 338
Query: 357 DLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLK 416
LY+ P C+ ++R + Q+ ++ ++ + RE+G L A N+++
Sbjct: 339 SLYQEMTRLGLCPDEFTCSIVVRGLCDGGQI--QVAARFLEGVREDGVNLNAAAYNALID 396
Query: 417 ALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDV 476
G + E M E G + S + S GK A M A G +
Sbjct: 397 EYCRNGNLEEALATCTRMTEVGVEPNVVSYSSLIDGHSKLGKMQIAMAIYTEMVAKGIEP 456
Query: 477 GDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKF 536
+ +LI GH G +D A ++M+E G S + +LV+ C +NR DA +F
Sbjct: 457 NVVTYTALIHGHAKNGGIDAAFRFHKEMIEN-GISPNAITVSVLVDGLCRENRVQDAVRF 515
Query: 537 V--HNCVREYDLKPWHTTY----EELIKN 559
V H+ ++ D+ + + + E LI N
Sbjct: 516 VMEHSGIKYSDIHSFFSNFTTEEEPLIPN 544
>gi|302767030|ref|XP_002966935.1| hypothetical protein SELMODRAFT_87043 [Selaginella moellendorffii]
gi|300164926|gb|EFJ31534.1| hypothetical protein SELMODRAFT_87043 [Selaginella moellendorffii]
Length = 428
Score = 58.9 bits (141), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 56/188 (29%), Positives = 79/188 (42%), Gaps = 7/188 (3%)
Query: 453 LSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSH 512
L A K A E + M A+G D + +LI G C +GDLD A QKM + G +
Sbjct: 20 LCKARKPRHALELLHVMAANGYDASVVTYTTLIDGLCKSGDLDAAQALLQKMADA-GCAP 78
Query: 513 AGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDA-LS 571
L++ C R DA + V +R +P TY LI L + DA L
Sbjct: 79 NVVTYTALIDGLCKARRPHDAIQTVKRMLRS-GCEPDLVTYNSLIHGLCMANRMDDAGLV 137
Query: 572 LLCLMKDHGFPPFV---DPFIKYVSKSGTSDDAIAFLKGMTSKRFPSMSVVLC-LFAAFF 627
L LM + G P V + FI + K+G D + L+ M V C + +
Sbjct: 138 LQELMIESGRIPDVVTYNTFISGLCKAGKLDKGLEMLEEMDRGGISPDVVTFCSIISGLC 197
Query: 628 QARRHSEA 635
+A R +A
Sbjct: 198 KANRIDDA 205
Score = 46.2 bits (108), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 81/380 (21%), Positives = 142/380 (37%), Gaps = 43/380 (11%)
Query: 300 DESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLY 359
D + YN + + L + ++L M + GY+ + T ++ + + A L
Sbjct: 9 DAAIYNTLIAGLCKARKPRHALELLHVMAANGYDASVVTYTTLIDGLCKSGDLDAAQALL 68
Query: 360 EFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALI 419
+ P+V T L+ + +++ V R+ R +G NS++ L
Sbjct: 69 QKMADAGCAPNVVTYTALIDGLCKARR-PHDAIQTVKRMLR-SGCEPDLVTYNSLIHGLC 126
Query: 420 SVGRMGECNKILKA-MEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGD 478
RM + +L+ M E G I + L AGK D+ E ++ M+ G
Sbjct: 127 MANRMDDAGLVLQELMIESGRIPDVVTYNTFISGLCKAGKLDKGLEMLEEMDRGGISPDV 186
Query: 479 KMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNR--------- 529
+ S+I G C A +D A F+ M+E+ G ++++ NR
Sbjct: 187 VTFCSIISGLCKANRIDDAFQVFKGMLER-GCVPDSLTYSIMLDNLSRANRLDTVEEVLE 245
Query: 530 --------AIDA--CKFVHNCVREYDLKPWHTTYEE-----LIKNLLVQRGFKDALS--- 571
A+ A +H +R D++ YE+ + + F AL
Sbjct: 246 HMVKSGHYALSATYAPLIHALIRAGDIESASWAYEQAMEAGCVMEVYTHNAFIGALCRSG 305
Query: 572 --------LLCLMKDHGFPPFV--DPFIKYVSKSGTSDDAIAFLKGMTSKRFPSMSVVL- 620
LL +++ P + + I + KSG DDA + M V+
Sbjct: 306 KFPLAKNILLGMIESGSLPNLLSYNFVIDGLCKSGNVDDAWKLSRKMLDSGCCKPDVIFF 365
Query: 621 -CLFAAFFQARRHSEAQDLL 639
L + F +A R S+AQ LL
Sbjct: 366 NTLISGFCKAGRLSQAQQLL 385
Score = 43.1 bits (100), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 51/211 (24%), Positives = 80/211 (37%), Gaps = 6/211 (2%)
Query: 413 SVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEAS 472
S++ L R+ + ++ K M E G + S S + LS A + D E ++HM S
Sbjct: 191 SIISGLCKANRIDDAFQVFKGMLERGCVPDSLTYSIMLDNLSRANRLDTVEEVLEHMVKS 250
Query: 473 GSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAID 532
G + LI AGD++ A+ +++ +E G Y + + C +
Sbjct: 251 GHYALSATYAPLIHALIRAGDIESASWAYEQAMEA-GCVMEVYTHNAFIGALCRSGKFPL 309
Query: 533 ACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPP----FVDPF 588
A + + L P +Y +I L DA L M D G F +
Sbjct: 310 AKNILLGMIESGSL-PNLLSYNFVIDGLCKSGNVDDAWKLSRKMLDSGCCKPDVIFFNTL 368
Query: 589 IKYVSKSGTSDDAIAFLKGMTSKRFPSMSVV 619
I K+G A LK M +K VV
Sbjct: 369 ISGFCKAGRLSQAQQLLKEMKAKNICVPDVV 399
>gi|147767652|emb|CAN77908.1| hypothetical protein VITISV_033177 [Vitis vinifera]
Length = 1563
Score = 58.9 bits (141), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 58/293 (19%), Positives = 119/293 (40%), Gaps = 19/293 (6%)
Query: 264 TFSNDLVKFVVDKLGD-----EPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCID 318
+ S+ +V+ V++K G + L FF WA H Y M + G+ D
Sbjct: 1136 SVSSAIVRRVIEKCGGVRHGIPFPQTLAFFNWATNLEEFGHSPEPYMEMIDLAGKVRQFD 1195
Query: 319 RFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKP-----SVNC 373
W+++D M+++ E+ +ET ++ R+ + + EAV + KP SV
Sbjct: 1196 LAWQLIDLMKTRNVEIPVETFTILVRRYVKAGLAAEAVHAFNRMEDYGCKPDKIAFSVVI 1255
Query: 374 CTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKA 433
+ ++ + Q F + F + V T S++ G + E ++
Sbjct: 1256 SSLSKKRRAIEAQ---SFFDSLKDRFEPDVVVYT-----SLVHGWCRAGNISEAERVFGE 1307
Query: 434 MEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGD 493
M+ G + S + L +G+ A++ M G D + +L++ H AG
Sbjct: 1308 MKMAGIXPNVYTYSIVIDALCRSGQITRAHDVFSEMIDVGCDPNAITFNNLMRVHVKAGR 1367
Query: 494 LDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDL 546
+K + +M ++ G + L+ ++C + +A K +++ + +L
Sbjct: 1368 TEKVLQVYNQM-KRLGCPPDAITYNFLIESHCRDDNLEEAVKILNSVKKGCNL 1419
>gi|18391414|ref|NP_563911.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75167758|sp|Q9ASZ8.1|PPR37_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g12620
gi|13605505|gb|AAK32746.1|AF361578_1 At1g12620/T12C24_25 [Arabidopsis thaliana]
gi|24111307|gb|AAN46777.1| At1g12620/T12C24_25 [Arabidopsis thaliana]
gi|332190781|gb|AEE28902.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 621
Score = 58.9 bits (141), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 73/324 (22%), Positives = 132/324 (40%), Gaps = 13/324 (4%)
Query: 331 GYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMR 390
GYE + T ++ V EA++L + + +KP++ L +V L+ +
Sbjct: 137 GYEPDTVTFSTLINGLCLEGRVSEALELVDRMVEMGHKPTL----ITLNALVNGLCLNGK 192
Query: 391 LFSKVVRVFR--ENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSK 448
+ V+ + R E G + VLK + G+ ++L+ MEE + S
Sbjct: 193 VSDAVLLIDRMVETGFQPNEVTYGPVLKVMCKSGQTALAMELLRKMEERKIKLDAVKYSI 252
Query: 449 IAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKE 508
I L G D A + ME G ++ +LI+G C AG D A + M++++
Sbjct: 253 IIDGLCKDGSLDNAFNLFNEMEIKGFKADIIIYTTLIRGFCYAGRWDDGAKLLRDMIKRK 312
Query: 509 GTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKD 568
T A L++ + + + +A + +H + + + P TY LI +
Sbjct: 313 ITPDV-VAFSALIDCFVKEGKLREA-EELHKEMIQRGISPDTVTYTSLIDGFCKENQLDK 370
Query: 569 ALSLLCLMKDHGFPPFVDPF---IKYVSKSGTSDDAIAFLKGMTSKRFPSMSVVL-CLFA 624
A +L LM G P + F I K+ DD + + M+ + + +V L
Sbjct: 371 ANHMLDLMVSKGCGPNIRTFNILINGYCKANLIDDGLELFRKMSLRGVVADTVTYNTLIQ 430
Query: 625 AFFQARRHSEAQDLLSK-CPRYVR 647
F + + A++L + R VR
Sbjct: 431 GFCELGKLEVAKELFQEMVSRRVR 454
Score = 49.3 bits (116), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 102/459 (22%), Positives = 187/459 (40%), Gaps = 78/459 (16%)
Query: 140 LESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLVDVMKKKG----- 194
LE EA + ++E + + T N ++ + ++G V + L+D M + G
Sbjct: 154 LEGRVSEALELVDRMVEM-GHKPTLITLNALVNGLCLNGKVSDAVLLIDRMVETGFQPNE 212
Query: 195 --YGVASHVRNK---------MTEKFEKEGLESDLEK----LKGIFATGSIDNSIEKVAS 239
YG V K + K E+ ++ D K + G+ GS+DN+
Sbjct: 213 VTYGPVLKVMCKSGQTALAMELLRKMEERKIKLDAVKYSIIIDGLCKDGSLDNAFNLFNE 272
Query: 240 RICKVVRSDI---------------WGDDVERQLRDL-NVTFSNDLVKF--VVDKLGDEP 281
K ++DI W DD + LRD+ + D+V F ++D E
Sbjct: 273 MEIKGFKADIIIYTTLIRGFCYAGRW-DDGAKLLRDMIKRKITPDVVAFSALIDCFVKEG 331
Query: 282 KKALIFFRWAEE------SGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEME 335
K R AEE + D +Y ++ +E+ +D+ +LD M SKG
Sbjct: 332 K-----LREAEELHKEMIQRGISPDTVTYTSLIDGFCKENQLDKANHMLDLMVSKGCGPN 386
Query: 336 METCVKVLGRFSERNMVKEAVDLY-EFAMACKNKPSVNCCTFL-----LRKIVVSKQLDM 389
+ T ++ + + N++ + ++L+ + ++ +V T + L K+ V+K+L
Sbjct: 387 IRTFNILINGYCKANLIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLEVAKELFQ 446
Query: 390 RLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKI 449
+ S+ VR + +L D + ++ GE K L+ E+ I S M+ I
Sbjct: 447 EMVSRRVRPDIVSYKILLDGLCDN-----------GEPEKALEIFEK---IEKSKMELDI 492
Query: 450 AF------RLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQK 503
+ +A K D+A + + G K + +I G C G L +A F+K
Sbjct: 493 GIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPDVKTYNIMIGGLCKKGSLSEADLLFRK 552
Query: 504 MVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVR 542
M E++G S G ++L+ + + A + K + R
Sbjct: 553 M-EEDGHSPNGCTYNILIRAHLGEGDATKSAKLIEEIKR 590
>gi|115482710|ref|NP_001064948.1| Os10g0495100 [Oryza sativa Japonica Group]
gi|22128714|gb|AAM92826.1| putative chloroplast RNA processing protein [Oryza sativa Japonica
Group]
gi|31432837|gb|AAP54424.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
sativa Japonica Group]
gi|113639557|dbj|BAF26862.1| Os10g0495100 [Oryza sativa Japonica Group]
gi|125575261|gb|EAZ16545.1| hypothetical protein OsJ_32018 [Oryza sativa Japonica Group]
Length = 461
Score = 58.9 bits (141), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 65/283 (22%), Positives = 116/283 (40%), Gaps = 5/283 (1%)
Query: 303 SYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFA 362
+Y+ + R +D + L + KG+ +E T +L +A+D+
Sbjct: 86 TYSVLIGCCCRAGRLDLGFAALGNVIKKGFRVEAITFTPLLKGLCADKRTSDAMDIVLCR 145
Query: 363 MA-CKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAML-NSVLKALIS 420
M P+V CT LL+ + + + + + G+ D +L N+V+
Sbjct: 146 MTQLGCIPNVFSCTILLKGLC-DENRSQEALELLQMMPDDGGDCPPDVVLYNTVINGFFK 204
Query: 421 VGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKM 480
G + M + G + S I L A D+A E ++ M +G +
Sbjct: 205 EGDPDKAYATYHEMFDQGILPDVVTYSSIIAALCKAQAMDKAMEVLNTMVKNGVMPNCRT 264
Query: 481 WVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNC 540
+ S++ G+C +G L +A F KM+ +G +LL++ C R +A K + N
Sbjct: 265 YNSIVHGYCSSGQLTEAIG-FLKMMCSDGVEPDVVTCNLLMDYLCKNRRCTEARK-IFNS 322
Query: 541 VREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPP 583
+ + LKP TTY L++ + + LL LM +G P
Sbjct: 323 MTKCGLKPDITTYCTLLQGYATKGALVEMHDLLDLMVWNGIQP 365
>gi|357457245|ref|XP_003598903.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355487951|gb|AES69154.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 767
Score = 58.5 bits (140), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 97/442 (21%), Positives = 160/442 (36%), Gaps = 80/442 (18%)
Query: 226 ATGSIDNSIEKVASRICKVVR--SDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKK 283
AT S + +A I R ++ WG V +L L + LV V+ K+ P
Sbjct: 79 ATFSASLRLSPIARFILDAFRKNNNNWGPPVVTELNKLR-RVTPTLVAEVL-KVQTNPTL 136
Query: 284 ALIFFRWAEESGFVKHDESSYNAMASVLGRED---CIDRFWKVLDEMRSKGYEMEMETCV 340
A FF W E+ H+ +SYNA L R + D+ +++D E + E +
Sbjct: 137 AFKFFHWVEKQKGYHHNFASYNAFTYCLNRANHFRAADQLPELMDAQGKPPSEKQFEILI 196
Query: 341 KVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKI----VVSKQLDMRLFSKVV 396
++ + + +Y +NK V FL +I V + LD+ L V
Sbjct: 197 RM------HSDAGRGLRVYHVYDKMRNKFGVKPRVFLYNRIMDALVKTGHLDLAL--SVY 248
Query: 397 RVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEE-------------------- 436
FRE+G V ++K L G++ E ++L M E
Sbjct: 249 NDFREDGLVEESVTFMILIKGLCKGGKIDEMLEVLGRMREKLCKPDVFAYTALVRIMVKE 308
Query: 437 ----GGFIASSNMK-----------SKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMW 481
G MK I L+ G+ E E M++ G + ++
Sbjct: 309 GNLDGCLRVWKEMKRDRVDPDVMAYGTIIGGLAKGGRVSEGYELFKEMKSKGHLIDRAIY 368
Query: 482 VSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDL-----LVNTYCSKNRAIDACKF 536
SL++ + A D + +V +GY DL L+ C+ N+ A K
Sbjct: 369 GSLVESFVAGNKVGLAFDLLKDLVS------SGYRADLGMYNNLIEGLCNLNKVEKAYKL 422
Query: 537 VHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPFIKYVSKSG 596
++E L+P + + L+ + ++ LL MK GFP
Sbjct: 423 FQVTIQE-GLEPDFLSVKPLLLAYAEAKRMEEFFMLLEKMKKLGFP-------------- 467
Query: 597 TSDDAIAFLKGMTSKRFPSMSV 618
DD F + K+ P M++
Sbjct: 468 VIDDLSKFFSHLVEKKGPEMAL 489
>gi|449455469|ref|XP_004145475.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g19890-like [Cucumis sativus]
Length = 728
Score = 58.5 bits (140), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 102/500 (20%), Positives = 195/500 (39%), Gaps = 52/500 (10%)
Query: 121 LELSGVVFTHEMVLKVLKNLESSPDE--ARRFFNWVLEKESERLSSKTYNL-MLRIVG-- 175
L++ THE + + L S A FF W + R + Y + + +VG
Sbjct: 109 LDMDAASLTHEQAISAVALLASEEGSMVALSFFYWAVGFPKFRYFMRLYIVCTMSLVGKC 168
Query: 176 ----VHGLVQEFWGL----------VDV---MKKKGYGVASHVRNKMT------EKFEKE 212
H +V+ G+ VD+ M+ +G + + V N++ E
Sbjct: 169 NLERAHEVVECMVGVFAEIGKLKEAVDMILDMRNQGLVLTTRVMNRIILVAAEMRLVEYA 228
Query: 213 GLESDLEKLKGIFATGSIDNSIEKVASRICKVVRSDIW-GDDVERQLRDLNVTFSNDLVK 271
G D +G++ I R V+ +D W + +ER N T + +
Sbjct: 229 GNVFDEMSARGVYPDSCTYKYIIVGYCRNGNVLEADRWICEMMERGFVVDNATLTLIITA 288
Query: 272 FVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKG 331
F L + +A+ FF + G + + +Y++M S L + + + +++L+EM G
Sbjct: 289 FCEKSLVN---RAVWFFHKVTKMG-LSPNLINYSSMISGLCKRGSVKQAFELLEEMVKNG 344
Query: 332 YEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKN-KPSVNCCTFLLRKIVVSKQLDMR 390
++ + T ++ ++ + A L+ + N KP+V+ T ++ ++L
Sbjct: 345 WKPNVYTHTSLIHGLCKKGWTERAFRLFLKLIRSDNYKPNVHTYTAMISGYCKEEKLSRA 404
Query: 391 --LFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSK 448
LF ++ +E G V +++ G + ++++ M GF ++ +
Sbjct: 405 EMLFERM----KEQGLVPNTNTYTTLIDGHCKAGNFSKAYELMELMSNEGFFPNTCTYNS 460
Query: 449 IAFRLSSAGKKDEA-----NEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQK 503
I L G+ +EA F + +EA G + LI C D+++A K
Sbjct: 461 IVDGLCKRGRAEEAFKLLNTGFQNQIEADGVT-----YTILISEQCKRADMNQALVFLNK 515
Query: 504 MVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQ 563
M K G + L+ +C +N D+ K ++ L P TY +I +
Sbjct: 516 MF-KVGFQPDIHLYTTLIAAFCRQNMMKDSEKLFDEVIK-LGLAPTKETYTSMICGYCRE 573
Query: 564 RGFKDALSLLCLMKDHGFPP 583
+ A+ M DHG P
Sbjct: 574 KKVSLAVKFFQKMSDHGCAP 593
Score = 45.8 bits (107), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 61/290 (21%), Positives = 118/290 (40%), Gaps = 15/290 (5%)
Query: 323 VLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIV 382
+LD MR++G + +++ +E +V+ A ++++ A P + CT+ +
Sbjct: 197 ILD-MRNQGLVLTTRVMNRIILVAAEMRLVEYAGNVFDEMSARGVYP--DSCTYKYIIVG 253
Query: 383 VSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGEC----NKILKAMEEGG 438
+ ++ + + E G V+ +A L ++ A + +K+ K
Sbjct: 254 YCRNGNVLEADRWICEMMERGFVVDNATLTLIITAFCEKSLVNRAVWFFHKVTKMGLSPN 313
Query: 439 FIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAA 498
I S+M S + R G +A E ++ M +G SLI G C G ++A
Sbjct: 314 LINYSSMISGLCKR----GSVKQAFELLEEMVKNGWKPNVYTHTSLIHGLCKKGWTERAF 369
Query: 499 DCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIK 558
F K++ + + +++ YC K + + + ++E L P TY LI
Sbjct: 370 RLFLKLIRSDNYKPNVHTYTAMISGYC-KEEKLSRAEMLFERMKEQGLVPNTNTYTTLID 428
Query: 559 NLLVQRGFKDALSLLCLMKDHGFPPFV---DPFIKYVSKSGTSDDAIAFL 605
F A L+ LM + GF P + + + K G +++A L
Sbjct: 429 GHCKAGNFSKAYELMELMSNEGFFPNTCTYNSIVDGLCKRGRAEEAFKLL 478
>gi|357130030|ref|XP_003566661.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
distachyon]
Length = 827
Score = 58.5 bits (140), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 78/361 (21%), Positives = 139/361 (38%), Gaps = 10/361 (2%)
Query: 283 KALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKV 342
KA R + G V+ D +YNA+ K+ +M SKG + T
Sbjct: 285 KAEFVLRQMVDKG-VEPDGVTYNAIIHGYSCSGHWKESAKMFRKMTSKGLIPDTVTFSSF 343
Query: 343 LGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQL-DMRLFSKVVRVFRE 401
+ + K+A +++++ + P + + LL + DM + + +
Sbjct: 344 MSSLCKHGRSKDAEEIFQYMTTKGHMPDIVSYSILLHGYATEGRFADM---NNLFHSMAD 400
Query: 402 NGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDE 461
G V +N ++ A G M E + M+ G + S + G+ +
Sbjct: 401 KGIVSNCHCINILISAHAKRGMMDEAMLVFTEMQGQGVRPNVVTYSTLISAFCRMGRLAD 460
Query: 462 ANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLV 521
A E M + G + ++ SLI G C+ GDL KA + +M+ K ++
Sbjct: 461 AMEKFSQMISIGIEPNTAVYHSLIHGFCMHGDLVKAKEFISEMMSKGLHRPNIVFFSSII 520
Query: 522 NTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGF 581
++ C + R +DA + V N V +P T+ LI + + A +L M G
Sbjct: 521 HSLCIEGRVMDA-QDVFNLVIHIGDRPTIVTFNSLIDGYCLVGKMEKAFGVLDAMVSVGI 579
Query: 582 PPFV---DPFIKYVSKSGTSDDAIAFLKGMTSKRF-PSMSVVLCLFAAFFQARRHSEAQD 637
P V + + KSG DD + + M K+ P+ + +A R S A+
Sbjct: 580 EPDVVTNNTLVSGYCKSGKIDDGLILFREMLHKKVKPTTVTYNIVLDGLLRAGRTSAAKK 639
Query: 638 L 638
+
Sbjct: 640 M 640
Score = 44.7 bits (104), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 57/258 (22%), Positives = 106/258 (41%), Gaps = 10/258 (3%)
Query: 412 NSVLKALISVGRMGEC-NKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHME 470
+ LK L R E + +L M E + + + + L + EA + + M
Sbjct: 163 TTFLKCLCHAKRTDEAVDVLLHRMSELSCVPDAISYNTVIKSLCGDSRSQEALDMVQRMA 222
Query: 471 ASGSDVGDKM--WVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKN 528
G + + ++I G G++ KA + F +MV+K G + +V+ C K
Sbjct: 223 KEGGRCSPDVVSFNTVIHGFFKQGEVSKACNLFNEMVQKGVVPDVG-TYNSIVDALC-KA 280
Query: 529 RAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPF 588
RA+D +FV + + ++P TY +I +K++ + M G P F
Sbjct: 281 RAMDKAEFVLRQMVDKGVEPDGVTYNAIIHGYSCSGHWKESAKMFRKMTSKGLIPDTVTF 340
Query: 589 IKYVS---KSGTSDDAIAFLKGMTSK-RFPSMSVVLCLFAAFFQARRHSEAQDLL-SKCP 643
++S K G S DA + MT+K P + L + R ++ +L S
Sbjct: 341 SSFMSSLCKHGRSKDAEEIFQYMTTKGHMPDIVSYSILLHGYATEGRFADMNNLFHSMAD 400
Query: 644 RYVRNHADVLNLLYSKKS 661
+ + ++ +N+L S +
Sbjct: 401 KGIVSNCHCINILISAHA 418
Score = 39.3 bits (90), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 56/128 (43%), Gaps = 1/128 (0%)
Query: 410 MLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHM 469
+LN+++ AL V R E N + A+ G + + + + L G +EA+ M
Sbjct: 690 ILNTMINALYKVRRREEANDLFAAISTSGLVPNVSTYGVMIRNLLKEGSVEEADTMFSSM 749
Query: 470 EASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNR 529
E SG ++ +I+ GD+ KA K V+ S LL++ + SK +
Sbjct: 750 EKSGCAPSSRLLNDIIRMLLQKGDIVKAGYYMSK-VDGTIISLEASTTSLLMSLFSSKGK 808
Query: 530 AIDACKFV 537
+ KF+
Sbjct: 809 HREQIKFL 816
>gi|15240991|ref|NP_198689.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75171307|sp|Q9FKR3.1|PP404_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g38730
gi|10176899|dbj|BAB10131.1| unnamed protein product [Arabidopsis thaliana]
gi|332006971|gb|AED94354.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 596
Score = 58.5 bits (140), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 55/240 (22%), Positives = 97/240 (40%), Gaps = 9/240 (3%)
Query: 346 FSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDM--RLFSKVVRVFRENG 403
+++ M+ +++ ++E +C KP + CT LL +V + D ++F K+V++ G
Sbjct: 143 YAKAGMINDSIVVFEQIRSCGLKPHLQACTVLLNSLVKQRLTDTVWKIFKKMVKL----G 198
Query: 404 NVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEAN 463
V + N ++ A G + K+L MEE G + + EA
Sbjct: 199 VVANIHVYNVLVHACSKSGDPEKAEKLLSEMEEKGVFPDIFTYNTLISVYCKKSMHFEAL 258
Query: 464 EFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNT 523
D ME SG + S I G G + +A F+++ + +H Y L++
Sbjct: 259 SVQDRMERSGVAPNIVTYNSFIHGFSREGRMREATRLFREIKDDVTANHVTYTT--LIDG 316
Query: 524 YCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPP 583
YC N ID + + P TY +++ L ++A LL M P
Sbjct: 317 YCRMND-IDEALRLREVMESRGFSPGVVTYNSILRKLCEDGRIREANRLLTEMSGKKIEP 375
Score = 46.6 bits (109), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 74/344 (21%), Positives = 137/344 (39%), Gaps = 19/344 (5%)
Query: 304 YNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAM 363
YN + + ++ K+L EM KG ++ T ++ + +++M EA+ + +
Sbjct: 206 YNVLVHACSKSGDPEKAEKLLSEMEEKGVFPDIFTYNTLISVYCKKSMHFEALSVQDRME 265
Query: 364 ACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVG- 422
P++ + S++ MR + R+FRE + D N V + G
Sbjct: 266 RSGVAPNIVTYNSFIHGF--SREGRMR---EATRLFRE---IKDDVTANHVTYTTLIDGY 317
Query: 423 -RMGECNKILK---AMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGD 478
RM + ++ L+ ME GF + I +L G+ EAN + M + +
Sbjct: 318 CRMNDIDEALRLREVMESRGFSPGVVTYNSILRKLCEDGRIREANRLLTEMSGKKIEPDN 377
Query: 479 KMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVH 538
+LI +C D+ A +KM+E G Y+ L++ +C +A + +
Sbjct: 378 ITCNTLINAYCKIEDMVSAVKVKKKMIE-SGLKLDMYSYKALIHGFCKVLELENAKEELF 436
Query: 539 NCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPF---IKYVSKS 595
+ + E P + TY L+ Q + LL + G V + I+ + K
Sbjct: 437 SMI-EKGFSPGYATYSWLVDGFYNQNKQDEITKLLEEFEKRGLCADVALYRGLIRRICKL 495
Query: 596 GTSDDAIAFLKGMTSKRFPSMSVVLCLFA-AFFQARRHSEAQDL 638
D A + M K SV+ A A+++ + +EA L
Sbjct: 496 EQVDYAKVLFESMEKKGLVGDSVIFTTMAYAYWRTGKVTEASAL 539
Score = 42.0 bits (97), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 74/337 (21%), Positives = 125/337 (37%), Gaps = 13/337 (3%)
Query: 179 LVQEFWGLVDVMKKKGYGVASHVRNKMTEKFEKEGLESDLEKL------KGIFATGSIDN 232
L W + M K G HV N + K G EKL KG+F N
Sbjct: 183 LTDTVWKIFKKMVKLGVVANIHVYNVLVHACSKSGDPEKAEKLLSEMEEKGVFPDIFTYN 242
Query: 233 SIEKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAE 292
++ V + + D +ER N+ N + + ++A FR +
Sbjct: 243 TLISVYCKKSMHFEALSVQDRMERSGVAPNIVTYNSFIHGFSRE--GRMREATRLFREIK 300
Query: 293 ESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMV 352
+ V + +Y + R + ID ++ + M S+G+ + T +L + E +
Sbjct: 301 DD--VTANHVTYTTLIDGYCRMNDIDEALRLREVMESRGFSPGVVTYNSILRKLCEDGRI 358
Query: 353 KEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLN 412
+EA L K +P C L+ K DM KV + E+G L
Sbjct: 359 REANRLLTEMSGKKIEPDNITCNTLIN--AYCKIEDMVSAVKVKKKMIESGLKLDMYSYK 416
Query: 413 SVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEAS 472
+++ V + + L +M E GF S + + K+DE + ++ E
Sbjct: 417 ALIHGFCKVLELENAKEELFSMIEKGFSPGYATYSWLVDGFYNQNKQDEITKLLEEFEKR 476
Query: 473 GSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEG 509
G ++ LI+ C +D A F+ M EK+G
Sbjct: 477 GLCADVALYRGLIRRICKLEQVDYAKVLFESM-EKKG 512
>gi|414865591|tpg|DAA44148.1| TPA: hypothetical protein ZEAMMB73_616668 [Zea mays]
Length = 838
Score = 58.5 bits (140), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 67/270 (24%), Positives = 113/270 (41%), Gaps = 18/270 (6%)
Query: 282 KKALIFFRWAEESGFVKHDESSYNAMASVLG--REDCIDRFWKVLDEMRSKGYEMEMETC 339
+ AL FFRWA E +H S NAMAS+L + +DR R +
Sbjct: 82 RHALDFFRWAAEQPGFRHSCYSLNAMASLLPPHQRAHLDRLATDALVSRCSMTPGALGFL 141
Query: 340 VKVLGRFSERNMVKEAVDLYEFAMACK-NKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRV 398
++ LG + D + ++C N + NC L K ++ + RL VV
Sbjct: 142 LRRLGAAGLPDTAARVFDAAKTTLSCAPNSYTYNCLLDALAKAGRAEDAEARLQEMVVTC 201
Query: 399 FRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGK 458
E+ + T L S+L+ + GR + + +L+ M + ++ ++ + + S GK
Sbjct: 202 GDESVDRYT---LTSLLQCYCNAGRPEDASAVLQRMSKRAWV-DEHVLTMLIVAYSKWGK 257
Query: 459 KDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAID 518
++A E + MEA +K L+ G G +D A + F KM + G+++D
Sbjct: 258 VEDAVELLGRMEALDMRPNEKTLSVLVHGLARQGRVDVAMNMFGKM------ASYGFSVD 311
Query: 519 L-----LVNTYCSKNRAIDACKFVHNCVRE 543
L L+ C N A K + R+
Sbjct: 312 LAMYSVLIEGLCHGNEMGKAVKLFEDMKRD 341
Score = 53.9 bits (128), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 80/374 (21%), Positives = 153/374 (40%), Gaps = 38/374 (10%)
Query: 297 VKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAV 356
++ +E + + + L R+ +D + +M S G+ +++ ++ N + +AV
Sbjct: 273 MRPNEKTLSVLVHGLARQGRVDVAMNMFGKMASYGFSVDLAMYSVLIEGLCHGNEMGKAV 332
Query: 357 DLYEFAMACKNKPSVNCCTFLLRKIVVS--KQLDMRLFSKVVRVFRENGNVLTDA----M 410
L+E + P V LL+KI+ + +Q D FS V EN L +
Sbjct: 333 KLFEDMKRDRITPDVR----LLKKIIEAFCRQGD---FSTVGPFINENAVHLKPGSAVLL 385
Query: 411 LNSVLKALISVGRMGECNKILKAMEEGG-------------FIASSNMKSK------IAF 451
N +L LI+ G + ++L +M G F+ + ++K +
Sbjct: 386 YNVILDGLINHGEVEAAYQLLSSMVRGDQRVSDDDTVGVHIFVITEDVKPNSDSFNIVVC 445
Query: 452 RLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTS 511
L K D A M G M+ LI C +G LD+A + F +M + G
Sbjct: 446 GLCKVKKLDLALALTKDMVGLGCKGKLLMFNDLILELCNSGKLDEAYEIFNQM-KDLGLK 504
Query: 512 HAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALS 571
+ + + L+ C + A + +R KPW ++++ L + +AL
Sbjct: 505 PSEFTYNSLLYGICRRKDTSAAADLLRE-MRANAHKPWIKNCTDMVQQLCLSGRITEALQ 563
Query: 572 LLCLMKDHGFPPFVDPF---IKYVSKSGTSDDAIAFLKGMTSKRF-PSMSVVLCLFAAFF 627
L M + GF P + + + + K G ++A+ ++SK + P + L F
Sbjct: 564 FLDGMLELGFLPDIVTYSAAMNGMCKVGDIENALGLFLDISSKCYLPDVVAHNILINGFR 623
Query: 628 QARRHSEAQDLLSK 641
+A + EAQ+++ +
Sbjct: 624 KAGKFDEAQEIMEE 637
Score = 48.9 bits (115), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 58/269 (21%), Positives = 108/269 (40%), Gaps = 12/269 (4%)
Query: 317 IDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTF 376
+D +++ ++M+ G + T +L R A DL A +KP + CT
Sbjct: 488 LDEAYEIFNQMKDLGLKPSEFTYNSLLYGICRRKDTSAAADLLREMRANAHKPWIKNCTD 547
Query: 377 LLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEE 436
+++++ +S ++ L + + E G + ++ + + VG + + +
Sbjct: 548 MVQQLCLSGRITEAL--QFLDGMLELGFLPDIVTYSAAMNGMCKVGDIENALGLFLDISS 605
Query: 437 GGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDK 496
++ + + AGK DEA E M+ M + G + +I C +G +DK
Sbjct: 606 KCYLPDVVAHNILINGFRKAGKFDEAQEIMEEMLSKGMLPSVVTYNLMIDIWCKSGSIDK 665
Query: 497 AADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDA----CKFVHNCVREYDLKPWHTT 552
A C KM+++E LL + C+ R +A CK +RE P
Sbjct: 666 AITCVYKMIDEEKPPTVVTYTSLL-DGLCNAGRPDEAIVLWCK-----MREKGCSPNGIA 719
Query: 553 YEELIKNLLVQRGFKDALSLLCLMKDHGF 581
Y L+ L + A++ MK GF
Sbjct: 720 YTALVNGLCKCGRMETAVNYYEEMKTKGF 748
>gi|358346916|ref|XP_003637510.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355503445|gb|AES84648.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 718
Score = 58.5 bits (140), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 136/634 (21%), Positives = 246/634 (38%), Gaps = 108/634 (17%)
Query: 35 LTLHESLHTLSSLLPTSSHTFYSRFSRLPICYSRLINLIDPKNPNFRNPMICSYSSEPAM 94
+TL LH+L P + + P+ +S N F+ P +C+ S
Sbjct: 1 MTLLSPLHSLPHPFPRTLNPHPHSTPTPPLSFS--------SNSTFKFPTLCTTPSSTTH 52
Query: 95 EQKESDFTVVSDIFYK--FSDVNDISKQLELSGVV------------FT--HEM--VLKV 136
+ T++ + F + + KQL+ SG + FT HE+ +LK+
Sbjct: 53 HPLPPNETLLLQLTQSSSFDSITTLLKQLKSSGSIPNATTFATLIQSFTNFHEIENLLKI 112
Query: 137 LKN-LESSPDEARRFFNWVLE--------KESERLSSK-----------TYNLMLRIVGV 176
L+N L PD F+N L K E L SK T+N++++ +
Sbjct: 113 LENELGFKPD--TNFYNIALNALVEDNKLKLVEMLHSKMVNEGIVLDVSTFNVLIKALCK 170
Query: 177 HGLVQEFWGLVDVMKKKGYGVASHVRNKMTEKFEKEG-LESDLEKLKGIFATGSI--DNS 233
++ +++ M G + + F +EG L L+ K + G + + S
Sbjct: 171 AHQLRPAILMLEEMANHGLKPDEITFTTLMQGFIEEGDLNGALKMKKQMLGYGCLLTNVS 230
Query: 234 IEKVASRICKVVRSDIWGDDVERQLR-DLNVT---FSNDLVKF--VVD---KLGDEPKKA 284
++ + + CK R VE LR L V+ FS D V F +V+ ++G+ A
Sbjct: 231 VKVLVNGFCKEGR-------VEEALRFVLEVSEEGFSPDQVTFNSLVNGFCRIGN-VNDA 282
Query: 285 LIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLG 344
L + E GF D +YN++ S + + ++ ++L +M + T ++
Sbjct: 283 LDIVDFMIEKGF-DPDVYTYNSLISGMCKLGEFEKAIEILQQMILRECSPNTVTYNTLIS 341
Query: 345 RFSERNMVKEAVDLYEFAMACKNKPSVNCCTF--LLRKIVVSKQLD--MRLFSK------ 394
+ N ++ A DL ++ P V CTF L++ + +SK D M +F +
Sbjct: 342 ALCKENEIEAATDLARILVSKGLLPDV--CTFNTLIQGLCLSKNQDIAMEMFEEMKNKGC 399
Query: 395 -------------------------VVRVFRENGNVLTDAMLNSVLKALISVGRMGECNK 429
+++ +G + N+++ L R+ + +
Sbjct: 400 KPDEFTYSILIDSLCYERRLKEALMLLKEMESSGCARNAVVYNTLIDGLCKSRRIEDAEE 459
Query: 430 ILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHC 489
I ME G SS + + L + +EA++ MD M G + SL+ C
Sbjct: 460 IFDQMELLGVSRSSVTYNTLIDGLCKNKRVEEASQLMDQMIMEGLKPDKFTYNSLLTYFC 519
Query: 490 VAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPW 549
GD++KA D Q M G + L+ C R A K + + + +
Sbjct: 520 RVGDIEKAGDIVQTMASN-GCEPDIFTYGTLIGGLCRAGRVDVASKLLRSVQMKGIVLTP 578
Query: 550 HTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPP 583
H Y +I+ L +++ K+ + L M + PP
Sbjct: 579 H-AYNPVIQALFMRKRTKEGMRLFREMMEKSDPP 611
Score = 58.2 bits (139), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 76/355 (21%), Positives = 151/355 (42%), Gaps = 13/355 (3%)
Query: 293 ESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMV 352
E GF K D + YN + L ++ + + +M ++G +++ T ++ + + +
Sbjct: 116 ELGF-KPDTNFYNIALNALVEDNKLKLVEMLHSKMVNEGIVLDVSTFNVLIKALCKAHQL 174
Query: 353 KEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLN 412
+ A+ + E KP T L++ + L+ L K+ + G +LT+ +
Sbjct: 175 RPAILMLEEMANHGLKPDEITFTTLMQGFIEEGDLNGAL--KMKKQMLGYGCLLTNVSVK 232
Query: 413 SVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEAS 472
++ GR+ E + + + E GF + + G ++A + +D M
Sbjct: 233 VLVNGFCKEGRVEEALRFVLEVSEEGFSPDQVTFNSLVNGFCRIGNVNDALDIVDFMIEK 292
Query: 473 GSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAID 532
G D + SLI G C G+ +KA + Q+M+ +E + + + L++ C +N I+
Sbjct: 293 GFDPDVYTYNSLISGMCKLGEFEKAIEILQQMILRECSPNT-VTYNTLISALCKENE-IE 350
Query: 533 ACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPF---- 588
A + + L P T+ LI+ L + + A+ + MK+ G P D F
Sbjct: 351 AATDLARILVSKGLLPDVCTFNTLIQGLCLSKNQDIAMEMFEEMKNKGCKP--DEFTYSI 408
Query: 589 -IKYVSKSGTSDDAIAFLKGMTSKRFPSMSVVL-CLFAAFFQARRHSEAQDLLSK 641
I + +A+ LK M S +VV L ++RR +A+++ +
Sbjct: 409 LIDSLCYERRLKEALMLLKEMESSGCARNAVVYNTLIDGLCKSRRIEDAEEIFDQ 463
>gi|302784708|ref|XP_002974126.1| hypothetical protein SELMODRAFT_100773 [Selaginella moellendorffii]
gi|300158458|gb|EFJ25081.1| hypothetical protein SELMODRAFT_100773 [Selaginella moellendorffii]
Length = 538
Score = 58.5 bits (140), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 81/348 (23%), Positives = 143/348 (41%), Gaps = 18/348 (5%)
Query: 262 NVTFSNDLVKFVVDKL--GDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDR 319
V + K VVD L +AL R E SG YN + + L R +
Sbjct: 49 GVVYGETTYKLVVDGLCGAGMANQALELVR--ELSGVYTPTVFIYNGIITGLCRASRVMD 106
Query: 320 FWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLR 379
+KVL++M + + T +L N K A ++++ KP+ L++
Sbjct: 107 AYKVLEKMVEESIVPNVFTYTILLNGLCRSNKTKLAREVFQEMKRNGCKPNPITYGTLIQ 166
Query: 380 KIVVSKQLDMRLFSKVVRVFRENGNV--LTDAML-NSVLKALISVGRMGECNKILKAMEE 436
+ + ++D + +RV E ++ TD + +++ L R+ + K ++ M +
Sbjct: 167 HLSRAGEID-----EALRVMIEQRSLELPTDVITCTTIVGGLCKASRLDDALKFMEEMRQ 221
Query: 437 GGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEA-SGSDVGDKMWVSLIKGHCVAGDLD 495
G + S + G+ D F + +A G + + + C AG LD
Sbjct: 222 MGVRPNEVTYSNLVHGFRQHGELDRVIRFFEEEKARKGGSLEAAAYPGYLDALCKAGYLD 281
Query: 496 KAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEE 555
+A +++ + G +L+NT+ + DA + +R +KP TY
Sbjct: 282 RARKSVEEL-RQSGVVPDVVTYSMLINTFARAGQ-FDASLELLEDMRRNGVKPDVVTYST 339
Query: 556 LIKNLLVQRGFKDALSLLCLMKDHGFPPFV---DPFIKYVSKSGTSDD 600
LI L +R F+DA LL LM+ G PP V + + + KSG D+
Sbjct: 340 LINVLCKERKFQDAFRLLELMEAAGSPPNVVTYNSVMDGLCKSGKMDE 387
>gi|224092336|ref|XP_002309564.1| predicted protein [Populus trichocarpa]
gi|222855540|gb|EEE93087.1| predicted protein [Populus trichocarpa]
Length = 593
Score = 58.5 bits (140), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 65/305 (21%), Positives = 122/305 (40%), Gaps = 16/305 (5%)
Query: 287 FFRWAEESGFVKH--------DESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMET 338
F +W E S + D ++N + + +E + VL M G E ++ T
Sbjct: 286 FSQWKEASALLNEMRSLNIMPDIVTFNVLVDTICKEGKVSEAQGVLKTMTEMGVEPDVVT 345
Query: 339 CVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLD--MRLFSKVV 396
++ +S R+ V EA L++ + KP V L+ K++D +LF++++
Sbjct: 346 YSSLMYGYSLRSEVVEARKLFDAMITKGCKPDVFSYNILINGYCKVKRIDEAKQLFNEMI 405
Query: 397 RVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSA 456
G + N+++ L +G + E + K M G + + S +
Sbjct: 406 ----HQGLTPNNVSYNTLIHGLCQLGSLREARNLFKNMHTNGNLPNLFTYSILLDGFCKQ 461
Query: 457 GKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYA 516
G +A M+++ S M+ LI C +G+L A F ++ K G
Sbjct: 462 GYFGKAFRLFRAMQSTYSKPNLVMYNILIDAMCKSGNLRDARKLFSELFVK-GLQPNAQI 520
Query: 517 IDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLM 576
++N C + +A + N + E P +Y +I+ L + A+ L+ M
Sbjct: 521 YTTIINGLCKEGLLDEALEAFRN-MEEDGCPPDEISYNVIIRGFLHHKDESRAVQLIGEM 579
Query: 577 KDHGF 581
+D GF
Sbjct: 580 RDKGF 584
Score = 45.4 bits (106), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 41/160 (25%), Positives = 70/160 (43%), Gaps = 5/160 (3%)
Query: 453 LSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSH 512
L GK +A E D M A G + ++I G C G+ AA +KM E+ G
Sbjct: 178 LCKVGKFAQAMELFDDMVARGCRPDVYTYTTIINGLCKIGETAAAAGLLKKM-EEAGCQP 236
Query: 513 AGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSL 572
+++++ K+R ++ + + ++ + P TY LI+ L +K+A +L
Sbjct: 237 NVVTYSTIIDSH-RKDRRVNEALDIFSYMKVKGISPDIFTYNSLIQGLCNFSQWKEASAL 295
Query: 573 LCLMKDHGFPPFVDPF---IKYVSKSGTSDDAIAFLKGMT 609
L M+ P + F + + K G +A LK MT
Sbjct: 296 LNEMRSLNIMPDIVTFNVLVDTICKEGKVSEAQGVLKTMT 335
Score = 42.4 bits (98), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 60/283 (21%), Positives = 110/283 (38%), Gaps = 9/283 (3%)
Query: 323 VLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIV 382
+L +M G + + T ++ + V EA+D++ + P + L++ +
Sbjct: 225 LLKKMEEAGCQPNVVTYSTIIDSHRKDRRVNEALDIFSYMKVKGISPDIFTYNSLIQGLC 284
Query: 383 VSKQLDMRLFSKVVRVFRENGNVLTDAM-LNSVLKALISVGRMGECNKILKAMEEGGFIA 441
Q + S ++ R + N++ D + N ++ + G++ E +LK M E G
Sbjct: 285 NFSQ--WKEASALLNEMR-SLNIMPDIVTFNVLVDTICKEGKVSEAQGVLKTMTEMGVEP 341
Query: 442 SSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCF 501
S + + S + EA + D M G + LI G+C +D+A F
Sbjct: 342 DVVTYSSLMYGYSLRSEVVEARKLFDAMITKGCKPDVFSYNILINGYCKVKRIDEAKQLF 401
Query: 502 QKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLL 561
+M+ +G + + + L++ C +A N +L P TY L+
Sbjct: 402 NEMIH-QGLTPNNVSYNTLIHGLCQLGSLREARNLFKNMHTNGNL-PNLFTYSILLDGFC 459
Query: 562 VQRGFKDALSLLCLMKDHGFPP---FVDPFIKYVSKSGTSDDA 601
Q F A L M+ P + I + KSG DA
Sbjct: 460 KQGYFGKAFRLFRAMQSTYSKPNLVMYNILIDAMCKSGNLRDA 502
>gi|15228763|ref|NP_188886.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75223290|sp|Q6NQ83.1|PP247_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At3g22470, mitochondrial; Flags: Precursor
gi|34365775|gb|AAQ65199.1| At3g22470 [Arabidopsis thaliana]
gi|51968798|dbj|BAD43091.1| hypothetical protein [Arabidopsis thaliana]
gi|332643122|gb|AEE76643.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 619
Score = 58.5 bits (140), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 78/364 (21%), Positives = 145/364 (39%), Gaps = 13/364 (3%)
Query: 284 ALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVL 343
L F + E +G ++HD + M + R+ + + VL GYE + T ++
Sbjct: 89 VLGFCKGMELNG-IEHDMYTMTIMINCYCRKKKLLFAFSVLGRAWKLGYEPDTITFSTLV 147
Query: 344 GRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLD--MRLFSKVVRVFRE 401
F V EAV L + + K +P + + L+ + + ++ + L ++V +
Sbjct: 148 NGFCLEGRVSEAVALVDRMVEMKQRPDLVTVSTLINGLCLKGRVSEALVLIDRMVEYGFQ 207
Query: 402 NGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDE 461
V +LN + K+ G + + MEE AS S + L G D+
Sbjct: 208 PDEVTYGPVLNRLCKS----GNSALALDLFRKMEERNIKASVVQYSIVIDSLCKDGSFDD 263
Query: 462 ANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLV 521
A + ME G + SLI G C G D A ++M+ + L+
Sbjct: 264 ALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDV-VTFSALI 322
Query: 522 NTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGF 581
+ + + + ++A K ++N + + P TY LI + +A + LM G
Sbjct: 323 DVFVKEGKLLEA-KELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKGC 381
Query: 582 PPFVDPF---IKYVSKSGTSDDAIAFLKGMTSKRF-PSMSVVLCLFAAFFQARRHSEAQD 637
P + + I K+ DD + + ++SK P+ L F Q+ + + A++
Sbjct: 382 EPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKE 441
Query: 638 LLSK 641
L +
Sbjct: 442 LFQE 445
Score = 56.2 bits (134), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 79/351 (22%), Positives = 147/351 (41%), Gaps = 12/351 (3%)
Query: 237 VASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPK--KALIFFRWAEES 294
V +R+CK S + D+ R++ + N+ S V+D L + AL F E
Sbjct: 216 VLNRLCKSGNSAL-ALDLFRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMK 274
Query: 295 GFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKE 354
G +K D +Y+++ L + D K+L EM + ++ T ++ F + + E
Sbjct: 275 G-IKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLE 333
Query: 355 AVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDM--RLFSKVVRVFRENGNVLTDAMLN 412
A +LY + P L+ L ++F +V E V ++N
Sbjct: 334 AKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILIN 393
Query: 413 SVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEAS 472
S KA R+ + ++ + + G I ++ + + +GK + A E M +
Sbjct: 394 SYCKA----KRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSR 449
Query: 473 GSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAID 532
G + L+ G C G+L+KA + F+KM + T G +++++ C+ ++ D
Sbjct: 450 GVPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMTLGIGIY-NIIIHGMCNASKVDD 508
Query: 533 ACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPP 583
A + + + +KP TY +I L + +A L MK+ G P
Sbjct: 509 AWSLFCS-LSDKGVKPDVVTYNVMIGGLCKKGSLSEADMLFRKMKEDGCTP 558
>gi|18397002|ref|NP_566237.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75207286|sp|Q9SR00.1|PP213_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At3g04760, chloroplastic; Flags: Precursor
gi|6175176|gb|AAF04902.1|AC011437_17 hypothetical protein [Arabidopsis thaliana]
gi|15810359|gb|AAL07067.1| unknown protein [Arabidopsis thaliana]
gi|22136960|gb|AAM91709.1| unknown protein [Arabidopsis thaliana]
gi|332640611|gb|AEE74132.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 602
Score = 58.5 bits (140), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 78/382 (20%), Positives = 152/382 (39%), Gaps = 41/382 (10%)
Query: 296 FVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEA 355
F + D +YNA+ + + + ID +VLD MRSK + + T ++G R + A
Sbjct: 153 FGQPDVFAYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLA 212
Query: 356 VDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVL 415
+ + ++ +P+V T L+ ++ +D L K++ G N+++
Sbjct: 213 LKVLNQLLSDNCQPTVITYTILIEATMLEGGVDEAL--KLMDEMLSRGLKPDMFTYNTII 270
Query: 416 KALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSD 475
+ + G + ++++ +E G + + L + GK +E + M M + D
Sbjct: 271 RGMCKEGMVDRAFEMVRNLELKGCEPDVISYNILLRALLNQGKWEEGEKLMTKMFSEKCD 330
Query: 476 VGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACK 535
+ LI C G +++A + + M EK G + Y+ D L+ +C + R A +
Sbjct: 331 PNVVTYSILITTLCRDGKIEEAMNLLKLMKEK-GLTPDAYSYDPLIAAFCREGRLDVAIE 389
Query: 536 FVHNCVRE---YDLKPWHTTYEELIKNLLVQRGFK------------------------- 567
F+ + + D+ ++T L KN + +
Sbjct: 390 FLETMISDGCLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVGCSPNSSSYNTMFSALW 449
Query: 568 ------DALSLLCLMKDHGFPP---FVDPFIKYVSKSGTSDDAIAFLKGMTSKRF-PSMS 617
AL ++ M +G P + I + + G D+A L M S F PS+
Sbjct: 450 SSGDKIRALHMILEMMSNGIDPDEITYNSMISCLCREGMVDEAFELLVDMRSCEFHPSVV 509
Query: 618 VVLCLFAAFFQARRHSEAQDLL 639
+ F +A R +A ++L
Sbjct: 510 TYNIVLLGFCKAHRIEDAINVL 531
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 71/292 (24%), Positives = 126/292 (43%), Gaps = 10/292 (3%)
Query: 323 VLDEMRSKGYEMEMETCVKVL-GRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKI 381
+L+ M KGY ++ C K++ G F+ RN+ K AV + E + +P V L+
Sbjct: 111 LLETMVRKGYNPDVILCTKLIKGFFTLRNIPK-AVRVMEI-LEKFGQPDVFAYNALINGF 168
Query: 382 VVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIA 441
++D ++V+ R N ++ +L S G++ K+L +
Sbjct: 169 CKMNRIDDA--TRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLALKVLNQLLSDNCQP 226
Query: 442 SSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCF 501
+ + + G DEA + MD M + G + ++I+G C G +D+A +
Sbjct: 227 TVITYTILIEATMLEGGVDEALKLMDEMLSRGLKPDMFTYNTIIRGMCKEGMVDRAFEMV 286
Query: 502 QKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLL 561
+ + E +G + ++L+ ++ + + K + E P TY LI L
Sbjct: 287 RNL-ELKGCEPDVISYNILLRALLNQGKWEEGEKLMTKMFSE-KCDPNVVTYSILITTLC 344
Query: 562 VQRGFKDALSLLCLMKDHGFPPFV---DPFIKYVSKSGTSDDAIAFLKGMTS 610
++A++LL LMK+ G P DP I + G D AI FL+ M S
Sbjct: 345 RDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLETMIS 396
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 62/294 (21%), Positives = 144/294 (48%), Gaps = 16/294 (5%)
Query: 116 DISKQLELSGV---VFTHEMVLKVLKNLESSPDEARRFFNWVLEKESERLSSKTYNLMLR 172
++ + LEL G V ++ ++L+ L N + +E + + ++ + + TY++++
Sbjct: 284 EMVRNLELKGCEPDVISYNILLRALLN-QGKWEEGEKLMTKMFSEKCDP-NVVTYSILIT 341
Query: 173 IVGVHGLVQEFWGLVDVMKKKGYGVASHVRNKMTEKFEKEG-LESDLEKLKGIFATGSID 231
+ G ++E L+ +MK+KG ++ + + F +EG L+ +E L+ + + G +
Sbjct: 342 TLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLETMISDGCLP 401
Query: 232 NSIE--KVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKL---GDEPKKALI 286
+ + V + +CK ++D ++ +L ++ + ++ + L GD+ + +
Sbjct: 402 DIVNYNTVLATLCKNGKAD-QALEIFGKLGEVGCSPNSSSYNTMFSALWSSGDKIRALHM 460
Query: 287 FFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRF 346
S + DE +YN+M S L RE +D +++L +MRS + + T VL F
Sbjct: 461 ILEMM--SNGIDPDEITYNSMISCLCREGMVDEAFELLVDMRSCEFHPSVVTYNIVLLGF 518
Query: 347 SERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVS--KQLDMRLFSKVVRV 398
+ + +++A+++ E + +P+ T L+ I + + M L + +VR+
Sbjct: 519 CKAHRIEDAINVLESMVGNGCRPNETTYTVLIEGIGFAGYRAEAMELANDLVRI 572
>gi|356495741|ref|XP_003516732.1| PREDICTED: pentatricopeptide repeat-containing protein At1g52640,
mitochondrial-like [Glycine max]
Length = 523
Score = 58.5 bits (140), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 72/332 (21%), Positives = 123/332 (37%), Gaps = 41/332 (12%)
Query: 253 DVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLG 312
D+E L + S +LV+ V+ + + A FF WA+ +H S++ + +LG
Sbjct: 63 DLELSLNPFSAQLSTNLVEQVLKRCKNLGFSAHRFFLWAKSIPGFQHSVMSFHILVEILG 122
Query: 313 REDCIDRFWKVLDEMR-SKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSV 371
W L EMR S YE+ E + +S+ N+ A+ + KP++
Sbjct: 123 SCKQFAILWDFLTEMRESHHYEINSEIFWLIFRAYSQANLPDGAIRSFNRMDEFGVKPTI 182
Query: 372 NCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKIL 431
+ LD LF R + L N
Sbjct: 183 H-------------DLDKLLFILCKRKHVKQAQQLFHQAKNR------------------ 211
Query: 432 KAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVA 491
F ++ S + G ++A + M G V + +L++ C
Sbjct: 212 -------FSLTAKTYSILISGWGEIGDSEKACDLFQAMLEQGCPVDLLAYNNLLQALCKG 264
Query: 492 GDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHT 551
G +D+A + F M+ K A + + +++YC + A + V + +R Y+L P
Sbjct: 265 GRVDEAKNIFHDMLSKRVEPDA-FTYSIFIHSYCDADDVQSAFR-VLDKMRRYNLLPNVF 322
Query: 552 TYEELIKNLLVQRGFKDALSLLCLMKDHGFPP 583
TY +IK L ++A LL M G P
Sbjct: 323 TYNCIIKQLCKNEHVEEAYQLLDEMISRGVKP 354
>gi|297816676|ref|XP_002876221.1| hypothetical protein ARALYDRAFT_906766 [Arabidopsis lyrata subsp.
lyrata]
gi|297322059|gb|EFH52480.1| hypothetical protein ARALYDRAFT_906766 [Arabidopsis lyrata subsp.
lyrata]
Length = 754
Score = 58.5 bits (140), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 73/316 (23%), Positives = 131/316 (41%), Gaps = 15/316 (4%)
Query: 300 DESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLY 359
D +YN++ S L + + + LD+M ++ T ++ + N V+EA +L
Sbjct: 329 DVYTYNSVISGLCKLGEVKEAVEFLDQMITRDCSPNTVTYNTLISTLCKENQVEEATELA 388
Query: 360 EFAMACKNKPSVNCCTF--LLRKIVVSK--QLDMRLFSKVVRVFRENGNVLTDAMLNSVL 415
+ P V CTF L++ + +++ ++ M LF ++ R G + N ++
Sbjct: 389 RVLTSKGILPDV--CTFNSLIQGLCLTRNHRVAMELFEEM----RSKGCEPDEFTYNMLI 442
Query: 416 KALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSD 475
+L S G++ E +LK ME G S + + A K EA E D ME G
Sbjct: 443 DSLCSKGKLDEALNMLKQMELSGCARSVITYNTLIDGFCKANKIREAEEIFDEMEVHGVS 502
Query: 476 VGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACK 535
+ +LI G C + ++ A+ +M+ EG + + L+ +C A
Sbjct: 503 RNSVTYNTLIDGLCKSRRVEDASQLMDQMI-MEGQKPDKFTYNSLLTHFCRGGDIKKAAD 561
Query: 536 FVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGF---PPFVDPFIKYV 592
V + +P TY LI L + A LL ++ G P +P I+ +
Sbjct: 562 IVQ-AMTSNGCEPDIVTYGTLISGLCKAGRVEVASKLLRSIQMKGIALTPHAYNPVIQGL 620
Query: 593 SKSGTSDDAIAFLKGM 608
+ + +AI + M
Sbjct: 621 FRKRKTTEAINLFREM 636
Score = 48.9 bits (115), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 76/369 (20%), Positives = 139/369 (37%), Gaps = 20/369 (5%)
Query: 284 ALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVL 343
AL F A + + + Y + LGR D K+L++M++ G EM + ++
Sbjct: 66 ALRLFNLASKKPNFSPEPALYEEILLRLGRSGSFDDMRKILEDMKNSGCEMGTSPFLILI 125
Query: 344 GRFSERNMVKEAVDLY-----EFAMACKNKPSVNCCTFLLRKIVVSKQLDM-RLFSKVVR 397
+++ + E + + +F + KP + +L +V L + + +
Sbjct: 126 ESYAQFELQDEILGVVHWMIDDFGL----KPDTHFYNRMLNLLVDGNNLKLVEIAHAKMS 181
Query: 398 VFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAG 457
V+ +V T N ++KAL ++ +L+ M G + + I G
Sbjct: 182 VWGIKPDVST---FNVLIKALCRAHQLRPAILMLEDMPSYGLVPDEKTFTTIMQGYIEEG 238
Query: 458 KKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAI 517
D A + M G + ++ G C G ++ A + Q+M ++G Y
Sbjct: 239 DLDGALRIREQMVEFGCSWSNVSVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYTF 298
Query: 518 DLLVNTYCSKNRAIDACKFVHNCVRE-YDLKPWHTTYEELIKNLLVQRGFKDALSLLCLM 576
+ LVN C A + + ++E YD P TY +I L K+A+ L M
Sbjct: 299 NTLVNGLCKAGHVKHAIEIMDVMLQEGYD--PDVYTYNSVISGLCKLGEVKEAVEFLDQM 356
Query: 577 KDHGFPPFV---DPFIKYVSKSGTSDDAIAFLKGMTSKR-FPSMSVVLCLFAAFFQARRH 632
P + I + K ++A + +TSK P + L R H
Sbjct: 357 ITRDCSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTRNH 416
Query: 633 SEAQDLLSK 641
A +L +
Sbjct: 417 RVAMELFEE 425
Score = 44.3 bits (103), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 88/461 (19%), Positives = 173/461 (37%), Gaps = 92/461 (19%)
Query: 166 TYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRNKMTEKFEKEGLESDLEKLKGIF 225
T+N ++ + G V+ ++DVM ++GY + N + + G+
Sbjct: 297 TFNTLVNGLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSV---------------ISGLC 341
Query: 226 ATGSIDNSIE---KVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPK 282
G + ++E ++ +R C N N L+ + + ++ +
Sbjct: 342 KLGEVKEAVEFLDQMITRDCSP-----------------NTVTYNTLISTLCKE--NQVE 382
Query: 283 KALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKV----LDEMRSKGYEMEMET 338
+A R G + D ++N++ L C+ R +V +EMRSKG E + T
Sbjct: 383 EATELARVLTSKGILP-DVCTFNSLIQGL----CLTRNHRVAMELFEEMRSKGCEPDEFT 437
Query: 339 CVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRV 398
++ + + EA+++ KQ+++ ++ V
Sbjct: 438 YNMLIDSLCSKGKLDEALNML-------------------------KQMELSGCARSVIT 472
Query: 399 FRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGK 458
+ N+++ ++ E +I ME G +S + + L + +
Sbjct: 473 Y------------NTLIDGFCKANKIREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRR 520
Query: 459 KDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAID 518
++A++ MD M G + SL+ C GD+ KAAD Q M G
Sbjct: 521 VEDASQLMDQMIMEGQKPDKFTYNSLLTHFCRGGDIKKAADIVQAMTSN-GCEPDIVTYG 579
Query: 519 LLVNTYCSKNRAIDACKFVHNC-VREYDLKPWHTTYEELIKNLLVQRGFKDALSLL--CL 575
L++ C R A K + + ++ L P Y +I+ L +R +A++L L
Sbjct: 580 TLISGLCKAGRVEVASKLLRSIQMKGIALTPH--AYNPVIQGLFRKRKTTEAINLFREML 637
Query: 576 MKDHGFPPFVDPFIKY---VSKSGTSDDAIAFLKGMTSKRF 613
++ P V I + + G +A+ FL + K F
Sbjct: 638 EQNEAAPDAVSYRIVFRGLCNGGGPIREAVDFLVELLEKGF 678
>gi|147838532|emb|CAN65388.1| hypothetical protein VITISV_038361 [Vitis vinifera]
Length = 676
Score = 58.5 bits (140), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 65/260 (25%), Positives = 108/260 (41%), Gaps = 16/260 (6%)
Query: 389 MRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSK 448
+R F +++RV G V T N +L L+ + C ++ + ME G + +
Sbjct: 253 LRSFRRMLRV----GFVPTVITSNYLLNGLLKLNYTDRCWEVYEEMERFGIAPNLYTFNI 308
Query: 449 IAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKE 508
+ L G + N+F++ ME G D + +LI +C G LD A + K++ +
Sbjct: 309 LTHVLCKDGDTGKVNKFLEKMEEEGFDPDIVTYNTLINSYCRKGRLDDAFYLY-KIMYRR 367
Query: 509 GTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKD 568
G + L+N C + R +A + H V L P TY LI + ++
Sbjct: 368 GVVPDLVSYTALMNGLCKEGRVREAHQLFHRMVHR-GLSPDIVTYNTLIHGYCKEGKMQE 426
Query: 569 ALSLLCLMKDHGFPPFVDPFIKYVSKSGTSDDAIAFLKGMT----SKRFP---SMSVVLC 621
+ SLL M +G P D F +V G + FL + +RF S +
Sbjct: 427 SRSLLHDMIWNGISP--DSFTCWVLVEGYGKEG-KFLSALNLVVELQRFGVSISQDIYSY 483
Query: 622 LFAAFFQARRHSEAQDLLSK 641
L A + R A++LL +
Sbjct: 484 LIVALCRENRPFAAKNLLER 503
Score = 45.1 bits (105), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 47/205 (22%), Positives = 84/205 (40%), Gaps = 9/205 (4%)
Query: 409 AMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDH 468
+ + ++KA + +GR+ E + + M GF+ + + + L D E +
Sbjct: 234 VVFDMLVKAYLRMGRVREGLRSFRRMLRVGFVPTVITSNYLLNGLLKLNYTDRCWEVYEE 293
Query: 469 MEASGSDVGDKMWVSLIKGH--CVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCS 526
ME G + ++ I H C GD K +KM E+EG + L+N+YC
Sbjct: 294 MERFG--IAPNLYTFNILTHVLCKDGDTGKVNKFLEKM-EEEGFDPDIVTYNTLINSYCR 350
Query: 527 KNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFV- 585
K R DA +++ + + P +Y L+ L + ++A L M G P +
Sbjct: 351 KGRLDDAF-YLYKIMYRRGVVPDLVSYTALMNGLCKEGRVREAHQLFHRMVHRGLSPDIV 409
Query: 586 --DPFIKYVSKSGTSDDAIAFLKGM 608
+ I K G ++ + L M
Sbjct: 410 TYNTLIHGYCKEGKMQESRSLLHDM 434
>gi|449479180|ref|XP_004155527.1| PREDICTED: pentatricopeptide repeat-containing protein At1g03560,
mitochondrial-like [Cucumis sativus]
Length = 653
Score = 58.5 bits (140), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 77/324 (23%), Positives = 128/324 (39%), Gaps = 23/324 (7%)
Query: 292 EESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNM 351
EE G S + + + C++ + V + M KG + ++ +S+
Sbjct: 317 EERGLEIPPHSYSLVIGGLCKQRKCMEAY-AVFETMNQKGCRANVAIYTALIDSYSKNGS 375
Query: 352 VKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLD--MRLFSKVVRVFRENGNVLTDA 409
++EA+ L+E +P + L+ + S +LD M LF F N V +A
Sbjct: 376 MEEAMRLFERMKNEGFEPDAVTYSVLVNGLCKSGRLDDGMELFD-----FCRNKGVAINA 430
Query: 410 ML-NSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDH 468
M S++ L GR+ + + + M E G S + I L+ GK D+A
Sbjct: 431 MFYASLIDGLGKAGRIEDAENLFEEMSEKGCARDSYCYNAIIDALAKHGKIDQALALFGR 490
Query: 469 MEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKN 528
ME G D + LI G ++A + KM++K G + + L C
Sbjct: 491 MEEEGCDQTVYTFTILIDGLFKEHKNEEAIKFWDKMIDK-GITPTVASFRALAIGLCLCG 549
Query: 529 RAIDACKFVHNCVREYDLKPW----HTTYEELIKNLLVQRGFKDALSLLCLMKDHG--FP 582
+ ACK + DL P T +E++I L + K+A L + D G P
Sbjct: 550 KVARACKILD------DLAPMGIIPETAFEDMINTLCKAQRIKEACKLADGIVDRGREIP 603
Query: 583 PFVDP-FIKYVSKSGTSDDAIAFL 605
+ I + K+G SD I +
Sbjct: 604 GRIRTVLINALRKAGNSDLVIKLM 627
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 59/264 (22%), Positives = 116/264 (43%), Gaps = 12/264 (4%)
Query: 399 FRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGK 458
++ G ++T++ NS++K+ ++G + E + + M+E G S + + L ++
Sbjct: 176 LKDRGLLMTESAANSLIKSFGNLGLVEELLWVWRRMKENGIDPSLYTYNFLVNGLVNSMF 235
Query: 459 KDEANEFMDHMEASGSDVGDKM-WVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAI 517
+ A + + M+ G V D + + +IKG+C AG L KA + F+ M K +
Sbjct: 236 IESAEKVFEVMDG-GKIVPDTVTYNIMIKGYCKAGKLQKAMEKFRDMEMKNVKPDKITYM 294
Query: 518 DLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMK 577
L+ C R D C ++ + E L+ +Y +I L QR +A ++ M
Sbjct: 295 TLI--QACYSERDFDTCLSLYLEMEERGLEIPPHSYSLVIGGLCKQRKCMEAYAVFETMN 352
Query: 578 DHGFPPFVDPFIKYV---SKSGTSDDAIAFLKGMTSKRF-PSMSVVLCLFAAFFQARRHS 633
G V + + SK+G+ ++A+ + M ++ F P L ++ R
Sbjct: 353 QKGCRANVAIYTALIDSYSKNGSMEEAMRLFERMKNEGFEPDAVTYSVLVNGLCKSGRLD 412
Query: 634 EAQDLLSKCPRYVRNHADVLNLLY 657
+ +L C RN +N ++
Sbjct: 413 DGMELFDFC----RNKGVAINAMF 432
>gi|302770855|ref|XP_002968846.1| hypothetical protein SELMODRAFT_90583 [Selaginella moellendorffii]
gi|300163351|gb|EFJ29962.1| hypothetical protein SELMODRAFT_90583 [Selaginella moellendorffii]
Length = 538
Score = 58.5 bits (140), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 81/348 (23%), Positives = 143/348 (41%), Gaps = 18/348 (5%)
Query: 262 NVTFSNDLVKFVVDKL--GDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDR 319
V + K VVD L +AL R E SG YN + + L R +
Sbjct: 49 GVVYGETTYKLVVDGLCGAGMANQALELVR--ELSGVYTPTLFIYNGIITGLCRASRVMD 106
Query: 320 FWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLR 379
+KVL++M + + T +L N K A ++++ KP+ L++
Sbjct: 107 AYKVLEKMVEESIVPNVFTYTILLNGLCRSNKTKLAREVFQEMKRNGCKPNPITYGTLIQ 166
Query: 380 KIVVSKQLDMRLFSKVVRVFRENGNV--LTDAML-NSVLKALISVGRMGECNKILKAMEE 436
+ + ++D + +RV E ++ TD + +++ L R+ + K ++ M +
Sbjct: 167 HLSRAGEID-----EALRVMIEQRSLELPTDVITCTTIVGGLCKASRLDDALKFMEEMRQ 221
Query: 437 GGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEA-SGSDVGDKMWVSLIKGHCVAGDLD 495
G + S + G+ D F + +A G + + + C AG LD
Sbjct: 222 MGVRPNEVTYSNLVHGFRQHGELDRVIRFFEEEKARKGGSLEAAAYPGYLDALCKAGYLD 281
Query: 496 KAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEE 555
+A +++ + G +L+NT+ + DA + +R +KP TY
Sbjct: 282 RARKSVEEL-RQSGVVPDVVTYSMLINTFARAGQ-FDASLELLEDMRRNGVKPDVVTYST 339
Query: 556 LIKNLLVQRGFKDALSLLCLMKDHGFPPFV---DPFIKYVSKSGTSDD 600
LI L +R F+DA LL LM+ G PP V + + + KSG D+
Sbjct: 340 LINVLCKERKFQDAFRLLELMEAAGSPPNVVTYNSVMDGLCKSGKMDE 387
>gi|326513116|dbj|BAK06798.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 489
Score = 58.5 bits (140), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 56/214 (26%), Positives = 88/214 (41%), Gaps = 16/214 (7%)
Query: 430 ILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGS-------DVGDKMWV 482
+L+ M E G + + I AG+ A F M+ G+ D+ +
Sbjct: 219 LLRQMAESGVTPTKTTYNIILKGFFRAGQIQHAWNFFLQMKKRGAKDESCKPDIVS--YT 276
Query: 483 SLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVR 542
++I G VAG LDKA F +M KEG + + + L+ C K DA + VR
Sbjct: 277 TIIHGLGVAGQLDKARKLFDEM-SKEGCTPSVATYNALIQVICKKGNVEDAVTVFDDMVR 335
Query: 543 EYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPF---IKYVSKSGTSD 599
+ D P TY LI+ L A+ L+ MK G P V + I+Y + G +
Sbjct: 336 K-DYMPNVVTYTVLIRGLCHVGKIDRAMKLMERMKGEGCEPVVQTYNVLIRYSFEEGEIE 394
Query: 600 DAIAFLKGMTSKR--FPSMSVVLCLFAAFFQARR 631
A+ + M+ P+ + +A F +R
Sbjct: 395 KALCLFERMSKGEDCLPNQDTYNIIISAMFVRKR 428
Score = 43.1 bits (100), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 57/284 (20%), Positives = 112/284 (39%), Gaps = 47/284 (16%)
Query: 258 LRDLNVTFSNDLVKFVVDKLGD------EPKKALIFFRWAEESGFVKHDESSYNAMASVL 311
+R L F D+V + + L D + +AL R ESG V +++YN +
Sbjct: 186 VRALERRFPPDVVTY--NTLADGWCRAKDTSRALDLLRQMAESG-VTPTKTTYNIILKGF 242
Query: 312 GREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSV 371
R I W +M+ +G + E+C KP +
Sbjct: 243 FRAGQIQHAWNFFLQMKKRG--AKDESC----------------------------KPDI 272
Query: 372 NCCTFLLRKIVVSKQLDMRLFSKVVRVFRE---NGNVLTDAMLNSVLKALISVGRMGECN 428
T ++ + V+ QLD K ++F E G + A N++++ + G + +
Sbjct: 273 VSYTTIIHGLGVAGQLD-----KARKLFDEMSKEGCTPSVATYNALIQVICKKGNVEDAV 327
Query: 429 KILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGH 488
+ M ++ + + + L GK D A + M+ M+ G + + + LI+
Sbjct: 328 TVFDDMVRKDYMPNVVTYTVLIRGLCHVGKIDRAMKLMERMKGEGCEPVVQTYNVLIRYS 387
Query: 489 CVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAID 532
G+++KA F++M + E +++++ + RA D
Sbjct: 388 FEEGEIEKALCLFERMSKGEDCLPNQDTYNIIISAMFVRKRAED 431
Score = 40.0 bits (92), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 62/281 (22%), Positives = 117/281 (41%), Gaps = 39/281 (13%)
Query: 163 SSKTYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRNKMTEKFEKEGLESDLEKLK 222
+ TYN++L+ G +Q W MKK+G ++ K + S +
Sbjct: 231 TKTTYNIILKGFFRAGQIQHAWNFFLQMKKRG----------AKDESCKPDIVSYTTIIH 280
Query: 223 GIFATGSIDNSIEKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPK 282
G+ G +D + + D++ ++ +V N L++ + K G+
Sbjct: 281 GLGVAGQLDKARK--------------LFDEMSKEGCTPSVATYNALIQVICKK-GNVED 325
Query: 283 KALIFFRWAEESGFVKHDESSYNAMASVLGREDC----IDRFWKVLDEMRSKGYEMEMET 338
+F V+ D +VL R C IDR K+++ M+ +G E ++T
Sbjct: 326 AVTVF------DDMVRKDYMPNVVTYTVLIRGLCHVGKIDRAMKLMERMKGEGCEPVVQT 379
Query: 339 CVKVLGRFS-ERNMVKEAVDLYEFAMACKN-KPSVNCCTFLLRKIVVSKQL-DMRLFSKV 395
VL R+S E +++A+ L+E ++ P+ + ++ + V K+ DM +++
Sbjct: 380 -YNVLIRYSFEEGEIEKALCLFERMSKGEDCLPNQDTYNIIISAMFVRKRAEDMATAARM 438
Query: 396 VRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEE 436
V E G + MLN VL L+ G +L+ E+
Sbjct: 439 VMEMVERGYLPRRFMLNRVLNGLMLTGNQQISRDLLRMQEK 479
>gi|297610666|ref|NP_001064867.2| Os10g0479200 [Oryza sativa Japonica Group]
gi|255679497|dbj|BAF26781.2| Os10g0479200 [Oryza sativa Japonica Group]
Length = 818
Score = 58.5 bits (140), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 67/300 (22%), Positives = 122/300 (40%), Gaps = 7/300 (2%)
Query: 342 VLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRE 401
V+ +++ + AV LY+ P++ C LL K D++L R +
Sbjct: 506 VIDGYAKLGDIVNAVRLYDQITVAGMHPTIVTCNSLLYG--YCKIGDLQLAESYFRAIQL 563
Query: 402 NGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDE 461
+G + T +++ AL G + + M A++ S I L + DE
Sbjct: 564 SGLLPTAVTYTTLMDALSEAGEVNTMLSLFDEMVAKRIKANAVTYSVIVKGLCKQLRFDE 623
Query: 462 ANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLV 521
A + M++ G + + +LI+G C + ++ A M+ + G +LL+
Sbjct: 624 AINVLKDMDSKGINADPITYNTLIQGFCESENVQMAFHIHDIMLCR-GLVPTPVTYNLLI 682
Query: 522 NTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGF 581
N C K + I A + + +RE +K Y LIK + +A+ L+ + D GF
Sbjct: 683 NVLCLKGKVIQA-EILLESLRENGIKLRKFAYTTLIKAQCAKGMPINAVLLVGKLLDAGF 741
Query: 582 PPFVDPF---IKYVSKSGTSDDAIAFLKGMTSKRFPSMSVVLCLFAAFFQARRHSEAQDL 638
++ F I + K + +A F+ M S + + C+ Q R + QDL
Sbjct: 742 EASIEDFSAAINRLCKRQFAKEAFMFVPIMLSVGIYPDTQIYCVLGRALQKNRTGKTQDL 801
Score = 45.4 bits (106), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 57/120 (47%), Gaps = 4/120 (3%)
Query: 495 DKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYE 554
D A + F++M E G S + Y+ +++N C +++ +A F+ +E KP T+
Sbjct: 200 DVALELFEEM-ESCGVSPSEYSHSIIINGLCKQDKVGEALSFLQEARKEGKFKPLGMTFN 258
Query: 555 ELIKNLLVQRGFKDALSLLCLMKDHGFPP---FVDPFIKYVSKSGTSDDAIAFLKGMTSK 611
L+ L + A S LCLM +G P I + K G+ ++A+ + +T +
Sbjct: 259 ILMSALCNWGFVQSAKSFLCLMLKYGLVPDRYTFSTLIHGLCKVGSMEEALDLFERVTKE 318
>gi|224095732|ref|XP_002310456.1| predicted protein [Populus trichocarpa]
gi|222853359|gb|EEE90906.1| predicted protein [Populus trichocarpa]
Length = 721
Score = 58.5 bits (140), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 77/356 (21%), Positives = 148/356 (41%), Gaps = 37/356 (10%)
Query: 282 KKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVK 341
+KA R GF+ D S+Y+ + L +++ +++ EM+ G ++
Sbjct: 204 EKAYNVIREMMSKGFIP-DTSTYSKVIGYLCNASKVEKAFQLFQEMKRNGIAPDVYVYTT 262
Query: 342 VLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRE 401
++ F + +++A + ++ P+V T L+ + S+++ ++V +
Sbjct: 263 LIDSFCKAGFIEQARNWFDEMERDGCAPNVVTYTALIHAYLKSRKVSKA--NEVYEMMLS 320
Query: 402 NGNVLTDAMLNSVLKALISVGRMGECNKILKAME-EGGFIASSNMKSKIA---------F 451
G +++ L G++ + ++I K M+ E I +M ++ F
Sbjct: 321 KGCTPNIVTYTALIDGLCKAGKIEKASQIYKIMKKENVEIPDVDMHFRVVDGASNEPNVF 380
Query: 452 R-------LSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKM 504
L A + EA + + M G + ++ +LI G C AG LD+A + F M
Sbjct: 381 TYGALVDGLCKAYQVKEARDLLKSMSVEGCEPNHVVYDALIDGCCKAGKLDEAQEVFTTM 440
Query: 505 VEKEGTSHAGYAIDLLVNTYCS------KNRAIDACKFVHNCVREYDLKPWHTTYEELIK 558
+E GY D V TY S K++ +D V + + E P Y E+I
Sbjct: 441 LE------CGY--DPNVYTYSSLIDRLFKDKRLDLALKVLSKMLENSCAPNVVIYTEMID 492
Query: 559 NLLVQRGFKDALSLLCLMKDHGFPPFVDPFIKYV---SKSGTSDDAIAFLKGMTSK 611
L +A L+ +M++ G P V + + KSG + + L+ M+SK
Sbjct: 493 GLCKVGKTDEAYKLMVMMEEKGCNPNVVTYTAMIDGFGKSGRVEKCLELLQQMSSK 548
Score = 55.5 bits (132), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 57/240 (23%), Positives = 102/240 (42%), Gaps = 18/240 (7%)
Query: 401 ENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKD 460
E G VL +++ + L +G+ + +++ M GFI ++ SK+ L +A K +
Sbjct: 180 EAGVVLNKVNISNFSRCLCGIGKFEKAYNVIREMMSKGFIPDTSTYSKVIGYLCNASKVE 239
Query: 461 EANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLL 520
+A + M+ +G ++ +LI C AG +++A + F +M E++G + L
Sbjct: 240 KAFQLFQEMKRNGIAPDVYVYTTLIDSFCKAGFIEQARNWFDEM-ERDGCAPNVVTYTAL 298
Query: 521 VNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHG 580
++ Y K+R + V+ + P TY LI L + A + +MK
Sbjct: 299 IHAY-LKSRKVSKANEVYEMMLSKGCTPNIVTYTALIDGLCKAGKIEKASQIYKIMKKEN 357
Query: 581 FP-PFVDPFIKYVSKSGTSDDAIAFLKGMTSKRFPSMSVVLCLFAAFFQARRHSEAQDLL 639
P VD + V G S++ F G L +A + EA+DLL
Sbjct: 358 VEIPDVDMHFRVV--DGASNEPNVFTYGA-------------LVDGLCKAYQVKEARDLL 402
Score = 40.8 bits (94), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 56/251 (22%), Positives = 91/251 (36%), Gaps = 43/251 (17%)
Query: 429 KILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGH 488
K+L M E + + +++ L GK DEA + M ME G + + ++I G
Sbjct: 470 KVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMVMMEEKGCNPNVVTYTAMIDGF 529
Query: 489 CVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSK--------------------- 527
+G ++K + Q+M K G + +L+N CS
Sbjct: 530 GKSGRVEKCLELLQQMSSK-GCAPNFVTYRVLINHCCSTGLLDEAHKLLEEMKQTYWPRH 588
Query: 528 -----------NRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLM 576
NR A ++ + E D P Y LI N + + AL L
Sbjct: 589 VAGYRKVIEGFNREFIASLYLSFEISENDSVPVAPVYRVLIDNFIKAGRLEIALEL--NE 646
Query: 577 KDHGFPPFVDP-------FIKYVSKSGTSDDAIAFLKGMTSK-RFPSMSVVLCLFAAFFQ 628
+ F PF I+ +S + +D A M S+ P +S+++ L +
Sbjct: 647 ELSSFSPFSAANQNIHITLIENLSLAHKADKAFELYADMISRGSIPELSILVHLIKGLLR 706
Query: 629 ARRHSEAQDLL 639
R EA LL
Sbjct: 707 VNRWEEALQLL 717
>gi|302143554|emb|CBI22115.3| unnamed protein product [Vitis vinifera]
Length = 765
Score = 58.5 bits (140), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 87/428 (20%), Positives = 179/428 (41%), Gaps = 26/428 (6%)
Query: 239 SRICKVVRSDIWGDDVERQLRDL----NVTFSNDLVKFVVDKLGDEPKKALIFFRWAEES 294
++I ++V WG ++E QL L N++ +K V D + +
Sbjct: 106 AKIVEIVNRWRWGPELETQLDKLHFVPNMSHVIQALKIVTDTDAS--------LNSGDNN 157
Query: 295 GFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKE 354
G + N + L + + ++ + +++ G +++ T ++ F + + +
Sbjct: 158 GV--SSVIACNQVVRDLAKAEKLEVAFCCFKKVQDSGCKIDTATYNSLITLFLNKGLPYK 215
Query: 355 AVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSV 414
A ++YE A + ++ + S +LD K+ + +E + + S+
Sbjct: 216 AFEVYESMEAAGCLLDGSTYELMIPSLAKSGRLDAAF--KLFQEMKEKNLRPSFLVFASL 273
Query: 415 LKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGS 474
+ ++ GR+ K+ M+ G S+ M + AGK + A D M+ +G
Sbjct: 274 VDSMGKAGRLDTSMKVYMEMQGFGLRPSATMYVSLIESFVKAGKLETALRIWDEMKKAGF 333
Query: 475 DVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDAC 534
++ +++ H +G L+ A F M EK G L+ + + + +D+
Sbjct: 334 RPNYGLYTMVVESHAKSGKLETAMSVFSDM-EKAGFLPTPSTYSCLLEMHSASGQ-VDSA 391
Query: 535 KFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFV---DPFIKY 591
++N + L+P +TY L+ L ++ A +L MK GF V D + Y
Sbjct: 392 MKLYNSMTNAGLRPGLSTYTALLTLLANKKLVDVAAKVLLEMKAMGFSVDVSASDVLMVY 451
Query: 592 VSKSGTSDDAIAFLKGMTSKRFPSMSVVL-CLFAAFFQARRHSEAQDLLSKCPRYVRNHA 650
+ K G+ D A+ +L+ M S + + ++ LF + + + A+ LL YV + A
Sbjct: 452 I-KDGSVDLALRWLRFMGSSGIRTNNFIIRQLFESCMKNGLYESAKPLLET---YVNSAA 507
Query: 651 DVLNLLYS 658
V +LY+
Sbjct: 508 KVDLILYT 515
>gi|357140400|ref|XP_003571756.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
mitochondrial-like [Brachypodium distachyon]
Length = 673
Score = 58.5 bits (140), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 92/414 (22%), Positives = 158/414 (38%), Gaps = 47/414 (11%)
Query: 263 VTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWK 322
TF+ + + +LG +AL R G V D Y + L + ++
Sbjct: 171 TTFTFSIAARALCRLG-RADEALTMLRSMARHGCVP-DTVLYQTVIHALCAQGGVNEAAT 228
Query: 323 VLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIV 382
+LDEM G ++ T ++ ++EA L + M P+ FLL+ +
Sbjct: 229 LLDEMFLMGCSADVNTFNDIVHGLCTLGRLREAARLVDRMMIRGCVPNAITYGFLLKGLC 288
Query: 383 VSKQ-------------LDMRLFSKVVRVFRENGNV---------------LTDAMLNSV 414
++ Q L++ LF+ V+ +G + DA S+
Sbjct: 289 LASQVEEARTMLGRVPELNVVLFNTVIGRCLLDGKLKEAAELYETMGSKGCPPDAHTYSI 348
Query: 415 L-KALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASG 473
L L +GR+G K+L+ ME+ GF S + + G D ++ M G
Sbjct: 349 LIHGLCKLGRLGSAMKLLREMEDKGFAPSIVTYTILLHSFCRNGMWDNIRAMLEVMSDKG 408
Query: 474 SDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDL-----LVNTYCSKN 528
+ + + +I C +D A Q+M + GY D+ ++ C+ N
Sbjct: 409 LSMNLEGYNGMICAVCKDRRMDDAMRFMQEMKSQ------GYKPDICTYNTIIYHLCNNN 462
Query: 529 RAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFV--- 585
+ +A N + E + TY LI LL ++DA+SL M HG +
Sbjct: 463 QMEEAEYLFENLLHE-GVVANAITYNTLIHALLRNGSWQDAISLANDMVLHGCSLDIVSY 521
Query: 586 DPFIKYVSKSGTSDDAIAFLKGMTSKRF-PSMSVVLCLFAAFFQARRHSEAQDL 638
+ IK + + G D +I L M K P+ L + + RR +A +L
Sbjct: 522 NGLIKALCRDGNVDRSIMLLSEMAEKGIKPNNVSYNLLISELCKTRRVRDALEL 575
>gi|357139998|ref|XP_003571561.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
distachyon]
Length = 807
Score = 58.5 bits (140), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 58/242 (23%), Positives = 102/242 (42%), Gaps = 5/242 (2%)
Query: 342 VLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRE 401
V G F E V EA DL+ P+V ++ + ++ +D ++R
Sbjct: 218 VHGLFKE-GKVGEACDLFHEMTQQGVPPNVVTYNSVIHALCKARAVDKA--QGILRQMVG 274
Query: 402 NGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDE 461
NG + N+++ ++G+ + ++ K M G I ++ S L G+ +E
Sbjct: 275 NGVQPDNVTYNTLIHGYSTLGQWKQAVRMFKEMTSRGVIPNTVTCSTFVAFLCKHGRIEE 334
Query: 462 ANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLV 521
A EF D M A G + + +L+ G+ AG L ++ F MV ++G + ++LV
Sbjct: 335 AREFFDSMLAKGHKLNIISYSTLLHGYATAGCLVDMSNLFNLMV-RDGIVPNQHVFNILV 393
Query: 522 NTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGF 581
N Y +K + F+ +++ L P TY +I DA+ M D G
Sbjct: 394 NGY-AKCGMVREAMFIFEDMQKRGLNPDVLTYLAVIHAFCRMGSMDDAMDKFNHMIDKGV 452
Query: 582 PP 583
P
Sbjct: 453 EP 454
Score = 56.2 bits (134), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 76/354 (21%), Positives = 142/354 (40%), Gaps = 18/354 (5%)
Query: 297 VKHDESSYNAMA---SVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVK 353
V+ D +YN + S LG+ R +K EM S+G TC + + ++
Sbjct: 277 VQPDNVTYNTLIHGYSTLGQWKQAVRMFK---EMTSRGVIPNTVTCSTFVAFLCKHGRIE 333
Query: 354 EAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQL-DM-RLFSKVVRVFRENGNVLTDAML 411
EA + ++ +A +K ++ + LL + L DM LF+ +VR +G V +
Sbjct: 334 EAREFFDSMLAKGHKLNIISYSTLLHGYATAGCLVDMSNLFNLMVR----DGIVPNQHVF 389
Query: 412 NSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEA 471
N ++ G + E I + M++ G + G D+A + +HM
Sbjct: 390 NILVNGYAKCGMVREAMFIFEDMQKRGLNPDVLTYLAVIHAFCRMGSMDDAMDKFNHMID 449
Query: 472 SGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAI 531
G + ++ LI+G C GDL KA + + + +G + L+N C + R
Sbjct: 450 KGVEPNFAVYQCLIQGFCTHGDLVKAEELVYE-IRNKGLGPCILSFASLINHLCKEGRVF 508
Query: 532 DACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPFIKY 591
+A + +R + K + LI + +A + M G P + +
Sbjct: 509 EAQRIFDMIIRTGE-KADVNIFTSLIDGYCLIGKMSEAFRVHDAMVSVGIEPDIVTYGTL 567
Query: 592 VS---KSGTSDDAIAFLKGMTSKRF-PSMSVVLCLFAAFFQARRHSEAQDLLSK 641
V+ K+G DD + + + K P+ + F A R + A+++ +
Sbjct: 568 VNGCCKNGRIDDGLILFRELLHKGVKPTTFTYGIILDGLFHAGRTAAAKEMFQE 621
Score = 49.3 bits (116), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 67/333 (20%), Positives = 136/333 (40%), Gaps = 12/333 (3%)
Query: 233 SIEKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKF--VVDKLGDEPK--KALIFF 288
S V +C RS W D+ R ++V + VV L E K +A F
Sbjct: 176 SYSTVLKSVCDDGRSQ-WALDILRMAVKQGGGCPCNVVVYSTVVHGLFKEGKVGEACDLF 234
Query: 289 RWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSE 348
+ G V + +YN++ L + +D+ +L +M G + + T ++ +S
Sbjct: 235 HEMTQQG-VPPNVVTYNSVIHALCKARAVDKAQGILRQMVGNGVQPDNVTYNTLIHGYST 293
Query: 349 RNMVKEAVDLYEFAMACKNKP-SVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLT 407
K+AV +++ + P +V C TF+ + + R F + N+++
Sbjct: 294 LGQWKQAVRMFKEMTSRGVIPNTVTCSTFVAFLCKHGRIEEAREFFDSMLAKGHKLNIIS 353
Query: 408 DAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMD 467
+++L + G + + + + M G + + ++ + + + G EA +
Sbjct: 354 ---YSTLLHGYATAGCLVDMSNLFNLMVRDGIVPNQHVFNILVNGYAKCGMVREAMFIFE 410
Query: 468 HMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSK 527
M+ G + ++++I C G +D A D F M++K G L+ +C+
Sbjct: 411 DMQKRGLNPDVLTYLAVIHAFCRMGSMDDAMDKFNHMIDK-GVEPNFAVYQCLIQGFCTH 469
Query: 528 NRAIDACKFVHNCVREYDLKPWHTTYEELIKNL 560
+ A + V+ +R L P ++ LI +L
Sbjct: 470 GDLVKAEELVYE-IRNKGLGPCILSFASLINHL 501
Score = 46.2 bits (108), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 96/501 (19%), Positives = 193/501 (38%), Gaps = 56/501 (11%)
Query: 145 DEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRNK 204
+EAR FF+ +L K +L+ +Y+ +L G + + L ++M + G HV N
Sbjct: 333 EEAREFFDSMLAK-GHKLNIISYSTLLHGYATAGCLVDMSNLFNLMVRDGIVPNQHVFNI 391
Query: 205 MTEKFEKEGLESDLEKLKGIFATGSIDNSIEKVASRICKVVRSDIWGDDVERQLRDLNVT 264
+ + K G+ + + ++ + + I R D +++
Sbjct: 392 LVNGYAKCGMVREAMFIFEDMQKRGLNPDVLTYLAVIHAFCRMGSMDDAMDK-------- 443
Query: 265 FSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVL 324
++DK G EP A+ GF H + + + +++
Sbjct: 444 -----FNHMIDK-GVEPNFAVY---QCLIQGFCTHGD---------------LVKAEELV 479
Query: 325 DEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVS 384
E+R+KG + + ++ + V EA +++ + K VN T L+ +
Sbjct: 480 YEIRNKGLGPCILSFASLINHLCKEGRVFEAQRIFDMIIRTGEKADVNIFTSLIDGYCLI 539
Query: 385 KQLD--MRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIAS 442
++ R+ +V V E V ++N K GR+ + + + + G +
Sbjct: 540 GKMSEAFRVHDAMVSVGIEPDIVTYGTLVNGCCKN----GRIDDGLILFRELLHKGVKPT 595
Query: 443 SNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQ 502
+ I L AG+ A E M SG V + L+ G C ++A FQ
Sbjct: 596 TFTYGIILDGLFHAGRTAAAKEMFQEMIESGIAVTIPTYSILLTGLCRNNCTEEAITVFQ 655
Query: 503 KMVEKEGTSHAGYAIDLLV-NTYCSK---NRAIDACKFVHNCVREYDLKPWHTTYEELIK 558
K+ D+++ N SK R + + + + +Y L P TY +++
Sbjct: 656 KLCAMN------VKFDIVILNIMISKMFKARRREEAEGLFASIPDYGLVPTVQTYTIMME 709
Query: 559 NLLVQRGFKDALSLLCLMKDHGFPP---FVDPFIKYVSKSGTSDDAIAFLKGMTSKRF-- 613
NL+ + ++A + +M G P F++ ++ + + G A ++ + K
Sbjct: 710 NLIKEGSVEEAEGVFSVMLKSGLSPTSHFINVIVRTLLEKGEIVKAGIYMCRVDGKSILF 769
Query: 614 --PSMSVVLCLFAAFFQARRH 632
+ S++L LF+ + R H
Sbjct: 770 EASTASMLLSLFSCKGKHREH 790
Score = 44.7 bits (104), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 46/197 (23%), Positives = 78/197 (39%), Gaps = 6/197 (3%)
Query: 453 LSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSH 512
L G+ EA D + +G ++ SLI G+C+ G + +A MV G
Sbjct: 501 LCKEGRVFEAQRIFDMIIRTGEKADVNIFTSLIDGYCLIGKMSEAFRVHDAMVSV-GIEP 559
Query: 513 AGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSL 572
LVN C KN ID + + +KP TY ++ L A +
Sbjct: 560 DIVTYGTLVNG-CCKNGRIDDGLILFRELLHKGVKPTTFTYGIILDGLFHAGRTAAAKEM 618
Query: 573 LCLMKDHGFP---PFVDPFIKYVSKSGTSDDAIAFLKGMTSKRFPSMSVVL-CLFAAFFQ 628
M + G P + + ++ +++AI + + + V+L + + F+
Sbjct: 619 FQEMIESGIAVTIPTYSILLTGLCRNNCTEEAITVFQKLCAMNVKFDIVILNIMISKMFK 678
Query: 629 ARRHSEAQDLLSKCPRY 645
ARR EA+ L + P Y
Sbjct: 679 ARRREEAEGLFASIPDY 695
>gi|413937324|gb|AFW71875.1| hypothetical protein ZEAMMB73_225396 [Zea mays]
Length = 818
Score = 58.5 bits (140), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 58/286 (20%), Positives = 119/286 (41%), Gaps = 4/286 (1%)
Query: 303 SYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFA 362
+Y+ + +E + +LDEMR+KG E ++ T ++ V EA+++
Sbjct: 288 TYSILLDATCKESGYRQAMALLDEMRAKGCEPDIVTYNVLINAMCNEGDVDEALNILSNL 347
Query: 363 MACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVG 422
+ KP T +L+ + S++ + +++ N + N+++ +L G
Sbjct: 348 PSHGCKPDAVTYTPVLKSLCGSER--WKEVEELLAEMTSNNCAPDEVTFNTIVTSLCQQG 405
Query: 423 RMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWV 482
+ +++ M E G +A S I L G+ D+A E + +++ G +
Sbjct: 406 LVDRAIEVVDHMSEHGCVADIVTYSSILDGLCDVGRVDDAVELLSRLKSYGCKPDTIAYT 465
Query: 483 SLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVR 542
+++KG C ++A + +M+ + + +V + C K A + V +
Sbjct: 466 TVLKGLCSTEQWERAEELMAEMLCSDCPPDE-VTFNTVVASLCQKGLVDRAIRVVEQ-MS 523
Query: 543 EYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPF 588
E P TY +I L + DA+ LL ++ G P + F
Sbjct: 524 ENGCSPDIVTYNCIIDGLCNESCIDDAMELLSDLQSCGCKPDIVTF 569
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 73/340 (21%), Positives = 142/340 (41%), Gaps = 29/340 (8%)
Query: 289 RWAE--------ESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCV 340
RW E S DE ++N + + L ++ +DR +V+D M G ++ T
Sbjct: 371 RWKEVEELLAEMTSNNCAPDEVTFNTIVTSLCQQGLVDRAIEVVDHMSEHGCVADIVTYS 430
Query: 341 KVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFR 400
+L + V +AV+L + KP T +L+ + ++Q + R + +
Sbjct: 431 SILDGLCDVGRVDDAVELLSRLKSYGCKPDTIAYTTVLKGLCSTEQWE-RAEELMAEMLC 489
Query: 401 ENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKD 460
+ + N+V+ +L G + ++++ M E G + I L + D
Sbjct: 490 SDCPP-DEVTFNTVVASLCQKGLVDRAIRVVEQMSENGCSPDIVTYNCIIDGLCNESCID 548
Query: 461 EANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVE--KEGTSHAGYAID 518
+A E + +++ G + +L+KG C +D+ D Q M + +
Sbjct: 549 DAMELLSDLQSCGCKPDIVTFNTLLKGLC---GVDRWEDAEQLMANMMRSNCPPDELTFN 605
Query: 519 LLVNTYCSK---NRAIDACKFV--HNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLL 573
++ + C K +AI+ K + + CV P +TY ++ LL + AL LL
Sbjct: 606 TVITSLCQKGLLTQAIETLKIMAENGCV------PNSSTYSIVVDALLKAGKAQAALELL 659
Query: 574 CLMKDHGFPPFV--DPFIKYVSKSGTSDDAIAFLKGMTSK 611
M +G P + + I ++K+G ++A+ L+ M S
Sbjct: 660 SGMT-NGTPDLITYNTVISNLTKAGKMEEALDLLRVMVSN 698
Score = 46.6 bits (109), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 66/321 (20%), Positives = 120/321 (37%), Gaps = 58/321 (18%)
Query: 221 LKGIFATGSIDNSIEKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDE 280
LKG+ +T + + E +A +C SD D+V N ++ K +VD+
Sbjct: 468 LKGLCSTEQWERAEELMAEMLC----SDCPPDEVT-----FNTVVASLCQKGLVDR---- 514
Query: 281 PKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCV 340
A+ E+G D +YN + L E CID ++L +++S G + ++ T
Sbjct: 515 ---AIRVVEQMSENG-CSPDIVTYNCIIDGLCNESCIDDAMELLSDLQSCGCKPDIVTFN 570
Query: 341 KVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVV---R 397
+L + ++A L M P L V++ L ++ + +
Sbjct: 571 TLLKGLCGVDRWEDAEQLMANMMRSNCPPD-----ELTFNTVITSLCQKGLLTQAIETLK 625
Query: 398 VFRENG--------NVLTDAML-------------------------NSVLKALISVGRM 424
+ ENG +++ DA+L N+V+ L G+M
Sbjct: 626 IMAENGCVPNSSTYSIVVDALLKAGKAQAALELLSGMTNGTPDLITYNTVISNLTKAGKM 685
Query: 425 GECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSL 484
E +L+ M G + +A+ + D A + ++ +G + +
Sbjct: 686 EEALDLLRVMVSNGLCPDTTTYRSLAYGVCREDGTDRAVRMLRRVQDTGLSPDTTFYNDV 745
Query: 485 IKGHCVAGDLDKAADCFQKMV 505
+ G C D A DCF MV
Sbjct: 746 LLGFCRDRRTDLAIDCFAHMV 766
Score = 42.7 bits (99), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 55/268 (20%), Positives = 106/268 (39%), Gaps = 17/268 (6%)
Query: 348 ERNMVKEAVDLYEFAMAC---KNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGN 404
+R + EA+ L++ +MA +N P V C L++++ ++ S RVF G
Sbjct: 162 QRGEIDEALVLFD-SMASGGGRNCPPVVPCNILIKRLCSDGRV-----SDAERVFAALGP 215
Query: 405 VLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANE 464
T N+++ GR+ + +++ M F + + + L G+ +A
Sbjct: 216 SATVVTYNTMVNGYCRAGRIEDARRLINGMP---FPPDTFTFNPLIRALCVRGRIPDALA 272
Query: 465 FMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTY 524
D M G + L+ C +A +M K G ++L+N
Sbjct: 273 VFDDMLHRGCSPSVVTYSILLDATCKESGYRQAMALLDEMRAK-GCEPDIVTYNVLINAM 331
Query: 525 CSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPP- 583
C++ +A + N + + KP TY ++K+L +K+ LL M + P
Sbjct: 332 CNEGDVDEALNILSN-LPSHGCKPDAVTYTPVLKSLCGSERWKEVEELLAEMTSNNCAPD 390
Query: 584 --FVDPFIKYVSKSGTSDDAIAFLKGMT 609
+ + + + G D AI + M+
Sbjct: 391 EVTFNTIVTSLCQQGLVDRAIEVVDHMS 418
>gi|224123318|ref|XP_002319049.1| predicted protein [Populus trichocarpa]
gi|222857425|gb|EEE94972.1| predicted protein [Populus trichocarpa]
Length = 585
Score = 58.5 bits (140), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 57/237 (24%), Positives = 95/237 (40%), Gaps = 6/237 (2%)
Query: 413 SVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEAS 472
+++K L +G ++LK MEE G + + L + +EA F M
Sbjct: 181 TIIKGLCKIGHTTNALQLLKKMEEKGCKPDVVAYNTVIDSLCKDRRANEAMYFFSEMVDQ 240
Query: 473 GSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAID 532
G + S++ G C G L++A F++M+ + + +LV+ C + ++
Sbjct: 241 GIPPNVVTYSSILHGFCNLGQLNEATSLFKQMIGRNVMPNT-VTFTILVDGLCKEGMILE 299
Query: 533 ACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFV---DPFI 589
A + V + E ++P TY L+ +Q +A L +M GF P V + I
Sbjct: 300 A-RRVFEMMTENGVEPDAYTYSALMDGYCLQSQMDEAQKLFDIMVGKGFAPSVRVYNILI 358
Query: 590 KYVSKSGTSDDAIAFLKGMTSKRF-PSMSVVLCLFAAFFQARRHSEAQDLLSKCPRY 645
KS ++A L M + P L F QA R AQ L + Y
Sbjct: 359 NGHCKSRRLNEAKTLLSEMYDRDLTPDTVTYSTLMQGFCQAGRPQVAQKLFKEMCSY 415
Score = 47.4 bits (111), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 99/484 (20%), Positives = 197/484 (40%), Gaps = 24/484 (4%)
Query: 111 FSDVNDISKQLELSGV---VFTHEMVLKVLKNLESSPDEARRFFNWV--LEKESERLSSK 165
+S V + KQ++LS + V+T +++ L S+ D F+ + + K + +
Sbjct: 85 YSTVISLCKQMDLSNIRPNVYTLTILINCL--CHSNRDHVHFAFSALGKMFKLGLQPTHV 142
Query: 166 TYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRNKMTEKFEKEGLESD-LEKLKGI 224
T+ +L + + + L D + K G+ + + + K G ++ L+ LK +
Sbjct: 143 TFGTLLNGLCSKAKIIDAVKLFDEIGKMGFAPSLITYTTIIKGLCKIGHTTNALQLLKKM 202
Query: 225 FATGSIDNSI--EKVASRICKVVRSD----IWGDDVERQLRDLNVTFSNDLVKFVVDKLG 278
G + + V +CK R++ + + V++ + VT+S+ L F LG
Sbjct: 203 EEKGCKPDVVAYNTVIDSLCKDRRANEAMYFFSEMVDQGIPPNVVTYSSILHGFC--NLG 260
Query: 279 DEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMET 338
+ +F + + V + ++ + L +E I +V + M G E + T
Sbjct: 261 QLNEATSLFKQMIGRN--VMPNTVTFTILVDGLCKEGMILEARRVFEMMTENGVEPDAYT 318
Query: 339 CVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRV 398
++ + ++ + EA L++ + PSV L+ S++L+ +K +
Sbjct: 319 YSALMDGYCLQSQMDEAQKLFDIMVGKGFAPSVRVYNILINGHCKSRRLNE---AKTLLS 375
Query: 399 FRENGNVLTDAMLNSVL-KALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAG 457
+ ++ D + S L + GR K+ K M G + S S + L G
Sbjct: 376 EMYDRDLTPDTVTYSTLMQGFCQAGRPQVAQKLFKEMCSYGLLPDSITYSILLDGLCKHG 435
Query: 458 KKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAI 517
DEA + M+ S + ++ LI+G C G L+ A + F + K G +
Sbjct: 436 HLDEAFRLLKAMQESKIEPHICIYNILIQGMCNFGKLEAARELFSNLFVK-GIQPSVVTY 494
Query: 518 DLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMK 577
++++ + + +AC+ V L P TY I+ L +A+ L+ M
Sbjct: 495 TVMISGLLKEGLSNEACEMFRKMVVNGCL-PNSCTYNVAIQGFLRNGDPSNAVRLIEEMV 553
Query: 578 DHGF 581
GF
Sbjct: 554 GRGF 557
Score = 46.6 bits (109), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 66/304 (21%), Positives = 108/304 (35%), Gaps = 44/304 (14%)
Query: 284 ALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVL 343
AL + EE G K D +YN + L ++ + EM +G + T +L
Sbjct: 195 ALQLLKKMEEKG-CKPDVVAYNTVIDSLCKDRRANEAMYFFSEMVDQGIPPNVVTYSSIL 253
Query: 344 GRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENG 403
F + EA L+ KQ+ R
Sbjct: 254 HGFCNLGQLNEATSLF-------------------------KQMIGR------------- 275
Query: 404 NVLTDAMLNSVL-KALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEA 462
NV+ + + ++L L G + E ++ + M E G + S + + DEA
Sbjct: 276 NVMPNTVTFTILVDGLCKEGMILEARRVFEMMTENGVEPDAYTYSALMDGYCLQSQMDEA 335
Query: 463 NEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVN 522
+ D M G +++ LI GHC + L++A +M +++ T L+
Sbjct: 336 QKLFDIMVGKGFAPSVRVYNILINGHCKSRRLNEAKTLLSEMYDRDLTPDT-VTYSTLMQ 394
Query: 523 TYCSKNRAIDACK-FVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGF 581
+C R A K F C Y L P TY L+ L +A LL M++
Sbjct: 395 GFCQAGRPQVAQKLFKEMC--SYGLLPDSITYSILLDGLCKHGHLDEAFRLLKAMQESKI 452
Query: 582 PPFV 585
P +
Sbjct: 453 EPHI 456
>gi|147812173|emb|CAN61517.1| hypothetical protein VITISV_033966 [Vitis vinifera]
Length = 635
Score = 58.5 bits (140), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/210 (20%), Positives = 96/210 (45%), Gaps = 2/210 (0%)
Query: 297 VKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAV 356
++ D +YN +A+ + + ++ EM++ + TC ++G + + +KEA+
Sbjct: 244 LQPDAVTYNTIATAYAQNGEASQAEGIILEMQNSNVQPNERTCCIIIGGYCKEGKIKEAL 303
Query: 357 DLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLK 416
+P++ L++ + +D ++V+ + E G ++++
Sbjct: 304 QFVYRMKDLGLQPNLVVFNSLIKGFI--DAVDRDGVNEVLTLMEEFGVKPDVITFSTIMN 361
Query: 417 ALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDV 476
A + G M +C +I M + +++ S +A AG+ ++A E ++ M SG
Sbjct: 362 AWSAAGFMDKCREIFDDMVKARIQPDAHVYSILAKGYVRAGEPEKAEEILNAMIKSGFHP 421
Query: 477 GDKMWVSLIKGHCVAGDLDKAADCFQKMVE 506
M+ ++I G C AG ++ A F+KM E
Sbjct: 422 NVVMFTTIINGWCSAGRMEYAIKIFEKMCE 451
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 69/346 (19%), Positives = 134/346 (38%), Gaps = 54/346 (15%)
Query: 340 VKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVF 399
K++ E+ +E + + + +KPS+ T LL + + K D ++
Sbjct: 76 TKLMNIMIEKGRPQEVQSILDSIIEGGHKPSLVTYTTLLAALTIQKHFDS--IHSIISQV 133
Query: 400 RENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKK 459
ENG N+V+ A G M E K M+E G +++ + + AG+
Sbjct: 134 EENGMEPDSIFFNAVINAFSESGNMQEAMKYFWKMKESGSKPTTSTFNTLIKGYGIAGEP 193
Query: 460 DEANEFMDHMEASGSDVGD-KMWVSLIKGHCVAGDLDKAADCFQKMVEK----------- 507
+E+ + ++ M + + + + L++ C ++ KA + KMV
Sbjct: 194 EESQKLLZLMSQDENVRPNLRTYNVLVRAWCNKXNIMKAWNVVYKMVASGLQPDAVTYNT 253
Query: 508 ---------EGTSHAGYAIDL--------------LVNTYCSKNRAIDACKFVHNCVREY 544
E + G +++ ++ YC + + +A +FV+ +++
Sbjct: 254 IATAYAQNGEASQAEGIILEMQNSNVQPNERTCCIIIGGYCKEGKIKEALQFVYR-MKDL 312
Query: 545 DLKPWHTTYEELIKNLLVQRGFKDAL------SLLCLMKDHGFPPFVDPF---IKYVSKS 595
L+P + LIK GF DA+ +L LM++ G P V F + S +
Sbjct: 313 GLQPNLVVFNSLIK------GFIDAVDRDGVNEVLTLMEEFGVKPDVITFSTIMNAWSAA 366
Query: 596 GTSDDAIAFLKGMTSKRF-PSMSVVLCLFAAFFQARRHSEAQDLLS 640
G D M R P V L + +A +A+++L+
Sbjct: 367 GFMDKCREIFDDMVKARIQPDAHVYSILAKGYVRAGEPEKAEEILN 412
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 67/309 (21%), Positives = 124/309 (40%), Gaps = 8/309 (2%)
Query: 277 LGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEM 336
+ EP+++ + V+ + +YN + + I + W V+ +M + G + +
Sbjct: 189 IAGEPEESQKLLZLMSQDENVRPNLRTYNVLVRAWCNKXNIMKAWNVVYKMVASGLQPDA 248
Query: 337 ETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVV 396
T + +++ +A + +P+ C ++ ++ L + V
Sbjct: 249 VTYNTIATAYAQNGEASQAEGIILEMQNSNVQPNERTCCIIIGGYCKEGKIKEAL--QFV 306
Query: 397 RVFRENGNVLTDAMLNSVLKALI-SVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSS 455
++ G + NS++K I +V R G N++L MEE G S I S+
Sbjct: 307 YRMKDLGLQPNLVVFNSLIKGFIDAVDRDG-VNEVLTLMEEFGVKPDVITFSTIMNAWSA 365
Query: 456 AGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGY 515
AG D+ E D M + ++ L KG+ AG+ +KA + M+ K G
Sbjct: 366 AGFMDKCREIFDDMVKARIQPDAHVYSILAKGYVRAGEPEKAEEILNAMI-KSGFHPNVV 424
Query: 516 AIDLLVNTYCSKNRAIDACK-FVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLC 574
++N +CS R A K F C E + P T+E LI R + +L
Sbjct: 425 MFTTIINGWCSAGRMEYAIKIFEKMC--ECGIAPNLKTFETLIWGYGEARQPWKSEEVLQ 482
Query: 575 LMKDHGFPP 583
+M++ P
Sbjct: 483 IMEEFNVQP 491
>gi|62320494|dbj|BAD95034.1| hypothetical protein [Arabidopsis thaliana]
Length = 602
Score = 58.5 bits (140), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 78/382 (20%), Positives = 152/382 (39%), Gaps = 41/382 (10%)
Query: 296 FVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEA 355
F + D +YNA+ + + + ID +VLD MRSK + + T ++G R + A
Sbjct: 153 FGQPDVFAYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLA 212
Query: 356 VDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVL 415
+ + ++ +P+V T L+ ++ +D L K++ G N+++
Sbjct: 213 LKVLNQLLSDNCQPTVITYTILIEATMLEGGVDEAL--KLMDEMLSRGLKPDMFTYNTII 270
Query: 416 KALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSD 475
+ + G + ++++ +E G + + L + GK +E + M M + D
Sbjct: 271 RGMCKEGMVDRAFEMVRNLELKGSEPDVISYNILLRALLNQGKWEEGEKLMTKMFSEKCD 330
Query: 476 VGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACK 535
+ LI C G +++A + + M EK G + Y+ D L+ +C + R A +
Sbjct: 331 PNVVTYSILITTLCRDGKIEEAMNLLKLMKEK-GLTPDAYSYDPLIAAFCREGRLDVAIE 389
Query: 536 FVHNCVRE---YDLKPWHTTYEELIKNLLVQRGFK------------------------- 567
F+ + + D+ ++T L KN + +
Sbjct: 390 FLETMISDGCLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVGCSPNSSSYNTMFSALW 449
Query: 568 ------DALSLLCLMKDHGFPP---FVDPFIKYVSKSGTSDDAIAFLKGMTSKRF-PSMS 617
AL ++ M +G P + I + + G D+A L M S F PS+
Sbjct: 450 SSGDKIRALHMILEMMSNGIDPDEITYNSMISCLCREGMVDEAFELLVDMRSCEFHPSVV 509
Query: 618 VVLCLFAAFFQARRHSEAQDLL 639
+ F +A R +A ++L
Sbjct: 510 TYNIVLLGFCKAHRIEDAINVL 531
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 71/292 (24%), Positives = 127/292 (43%), Gaps = 10/292 (3%)
Query: 323 VLDEMRSKGYEMEMETCVKVL-GRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKI 381
+L+ M KGY ++ C K++ G F+ RN+ K AV + E + +P V L+
Sbjct: 111 LLETMVRKGYNPDVILCTKLIKGFFTLRNIPK-AVRVMEI-LEKFGQPDVFAYNALINGF 168
Query: 382 VVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIA 441
++D ++V+ R N ++ +L S G++ K+L +
Sbjct: 169 CKMNRIDDA--TRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLALKVLNQLLSDNCQP 226
Query: 442 SSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCF 501
+ + + G DEA + MD M + G + ++I+G C G +D+A +
Sbjct: 227 TVITYTILIEATMLEGGVDEALKLMDEMLSRGLKPDMFTYNTIIRGMCKEGMVDRAFEMV 286
Query: 502 QKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLL 561
+ + E +G+ + ++L+ ++ + + K + E P TY LI L
Sbjct: 287 RNL-ELKGSEPDVISYNILLRALLNQGKWEEGEKLMTKMFSE-KCDPNVVTYSILITTLC 344
Query: 562 VQRGFKDALSLLCLMKDHGFPPFV---DPFIKYVSKSGTSDDAIAFLKGMTS 610
++A++LL LMK+ G P DP I + G D AI FL+ M S
Sbjct: 345 RDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLETMIS 396
Score = 55.8 bits (133), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 62/294 (21%), Positives = 144/294 (48%), Gaps = 16/294 (5%)
Query: 116 DISKQLELSGV---VFTHEMVLKVLKNLESSPDEARRFFNWVLEKESERLSSKTYNLMLR 172
++ + LEL G V ++ ++L+ L N + +E + + ++ + + TY++++
Sbjct: 284 EMVRNLELKGSEPDVISYNILLRALLN-QGKWEEGEKLMTKMFSEKCDP-NVVTYSILIT 341
Query: 173 IVGVHGLVQEFWGLVDVMKKKGYGVASHVRNKMTEKFEKEG-LESDLEKLKGIFATGSID 231
+ G ++E L+ +MK+KG ++ + + F +EG L+ +E L+ + + G +
Sbjct: 342 TLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLETMISDGCLP 401
Query: 232 NSIE--KVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKL---GDEPKKALI 286
+ + V + +CK ++D ++ +L ++ + ++ + L GD+ + +
Sbjct: 402 DIVNYNTVLATLCKNGKAD-QALEIFGKLGEVGCSPNSSSYNTMFSALWSSGDKIRALHM 460
Query: 287 FFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRF 346
S + DE +YN+M S L RE +D +++L +MRS + + T VL F
Sbjct: 461 ILEMM--SNGIDPDEITYNSMISCLCREGMVDEAFELLVDMRSCEFHPSVVTYNIVLLGF 518
Query: 347 SERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVS--KQLDMRLFSKVVRV 398
+ + +++A+++ E + +P+ T L+ I + + M L + +VR+
Sbjct: 519 CKAHRIEDAINVLESMVGNGCRPNETTYTVLIEGIGFAGYRAEAMELANDLVRI 572
>gi|356540361|ref|XP_003538658.1| PREDICTED: pentatricopeptide repeat-containing protein At1g52640,
mitochondrial-like [Glycine max]
Length = 523
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 71/332 (21%), Positives = 126/332 (37%), Gaps = 41/332 (12%)
Query: 253 DVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLG 312
D+E L + S +LV V+ + + A FF WA+ +H S++ + +LG
Sbjct: 63 DLELSLNPFSAQISTNLVDQVLKRCNNLGFSAHRFFLWAKSIPGFQHSVMSFHILVEILG 122
Query: 313 REDCIDRFWKVLDEMR-SKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSV 371
W L EMR S YE+ E + +S+ N+ A+ + KP++
Sbjct: 123 SCKQFAILWDFLIEMRGSCHYEINSEIFWLIFRAYSQANLPDGAIRSFNRMDEFGIKPTI 182
Query: 372 NCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKIL 431
N LL + +K + + + F + N
Sbjct: 183 NDFDKLLFILCKTKHV-----KQAQQFFDQAKN--------------------------- 210
Query: 432 KAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVA 491
F+ ++ S + G ++A+E M G V + +L++ C
Sbjct: 211 ------RFLLTAKTYSILISGWGDIGDSEKAHELFQAMLEQGCPVDLLAYNNLLQALCKG 264
Query: 492 GDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHT 551
G +D+A F M+ K A + + +++YC + A + V + +R Y++ P
Sbjct: 265 GCVDEAKTIFHDMLSKRVEPDA-FTYSIFIHSYCDADDVQSALR-VLDKMRRYNILPNVF 322
Query: 552 TYEELIKNLLVQRGFKDALSLLCLMKDHGFPP 583
TY +IK L ++A LL M G P
Sbjct: 323 TYNCIIKRLCKNEHVEEAYLLLDEMISRGVRP 354
>gi|449438480|ref|XP_004137016.1| PREDICTED: pentatricopeptide repeat-containing protein At1g03560,
mitochondrial-like [Cucumis sativus]
Length = 651
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 77/324 (23%), Positives = 128/324 (39%), Gaps = 23/324 (7%)
Query: 292 EESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNM 351
EE G S + + + C++ + V + M KG + ++ +S+
Sbjct: 315 EERGLEIPPHSYSLVIGGLCKQRKCMEAY-AVFETMNQKGCRANVAIYTALIDSYSKNGS 373
Query: 352 VKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLD--MRLFSKVVRVFRENGNVLTDA 409
++EA+ L+E +P + L+ + S +LD M LF F N V +A
Sbjct: 374 MEEAMRLFERMKNEGFEPDAVTYSVLVNGLCKSGRLDDGMELFD-----FCRNKGVAINA 428
Query: 410 ML-NSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDH 468
M S++ L GR+ + + + M E G S + I L+ GK D+A
Sbjct: 429 MFYASLIDGLGKAGRIEDAENLFEEMSEKGCARDSYCYNAIIDALAKHGKIDQALALFGR 488
Query: 469 MEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKN 528
ME G D + LI G ++A + KM++K G + + L C
Sbjct: 489 MEEEGCDQTVYTFTILIDGLFKEHKNEEAIKFWDKMIDK-GITPTVASFRALAIGLCLCG 547
Query: 529 RAIDACKFVHNCVREYDLKPW----HTTYEELIKNLLVQRGFKDALSLLCLMKDHG--FP 582
+ ACK + DL P T +E++I L + K+A L + D G P
Sbjct: 548 KVARACKILD------DLAPMGIIPETAFEDMINTLCKAQRIKEACKLADGIVDRGREIP 601
Query: 583 PFVDP-FIKYVSKSGTSDDAIAFL 605
+ I + K+G SD I +
Sbjct: 602 GRIRTVLINALRKAGNSDLVIKLM 625
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 59/264 (22%), Positives = 116/264 (43%), Gaps = 12/264 (4%)
Query: 399 FRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGK 458
++ G ++T++ NS++K+ ++G + E + + M+E G S + + L ++
Sbjct: 174 LKDRGLLMTESAANSLIKSFGNLGLVEELLWVWRRMKENGIDPSLYTYNFLVNGLVNSMF 233
Query: 459 KDEANEFMDHMEASGSDVGDKM-WVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAI 517
+ A + + M+ G V D + + +IKG+C AG L KA + F+ M K +
Sbjct: 234 IESAEKVFEVMDG-GKIVPDTVTYNIMIKGYCKAGKLQKAMEKFRDMEMKNVKPDKITYM 292
Query: 518 DLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMK 577
L+ C R D C ++ + E L+ +Y +I L QR +A ++ M
Sbjct: 293 TLI--QACYSERDFDTCLSLYLEMEERGLEIPPHSYSLVIGGLCKQRKCMEAYAVFETMN 350
Query: 578 DHGFPPFVDPFIKYV---SKSGTSDDAIAFLKGMTSKRF-PSMSVVLCLFAAFFQARRHS 633
G V + + SK+G+ ++A+ + M ++ F P L ++ R
Sbjct: 351 QKGCRANVAIYTALIDSYSKNGSMEEAMRLFERMKNEGFEPDAVTYSVLVNGLCKSGRLD 410
Query: 634 EAQDLLSKCPRYVRNHADVLNLLY 657
+ +L C RN +N ++
Sbjct: 411 DGMELFDFC----RNKGVAINAMF 430
>gi|255558614|ref|XP_002520332.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223540551|gb|EEF42118.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 441
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 70/290 (24%), Positives = 115/290 (39%), Gaps = 28/290 (9%)
Query: 283 KALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSK----GYEM---E 335
KA+ FF W E + H ES+ M VL R + +D+ W L EM + G ++
Sbjct: 108 KAMEFFYWVETNCDFIHTESTCREMGFVLARANRLDKLWNFLQEMAKREVFDGRKLVTTN 167
Query: 336 METC-VKVLGRFSERNMVKEAVDLYEFAMACKNKPSV---NCCTFLLRKIVVSKQLDMRL 391
TC +KVLG E +VKEA+ L+ KP V N + L +I K+ L
Sbjct: 168 AVTCLIKVLG---EEGLVKEALSLFYRMKKYHCKPDVYAYNTIIYALCRIGNFKKARYLL 224
Query: 392 FSKVVRVFRENGNVLT-DAMLNSVLKALISVG-------RMGECNKILKAMEEGGFIASS 443
+ F + T M++S K + G R+ E N + + M GF
Sbjct: 225 EQMELPGFYCPPDTFTYTIMISSYCKYSLQTGCRKAIRRRLWEANHLFRIMLFKGFAPDV 284
Query: 444 NMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQK 503
+ + + + A E + M G + S I+ + ++DKA + ++
Sbjct: 285 VTYNCLIDGCCKTYRIERALELFEDMNRRGCVPNRVTYNSFIRYYSAVNEIDKAVEMLRR 344
Query: 504 MVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCV------REYDLK 547
M + +++ C +R ++A F+ V REY K
Sbjct: 345 MQNMNHGLATSSSYTPIIHALCEADRVLEARDFLLELVDGGSIPREYTYK 394
>gi|224085950|ref|XP_002307751.1| predicted protein [Populus trichocarpa]
gi|222857200|gb|EEE94747.1| predicted protein [Populus trichocarpa]
Length = 480
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 53/258 (20%), Positives = 104/258 (40%), Gaps = 10/258 (3%)
Query: 283 KALIFFRWA-EESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVK 341
+ L FF WA + GF K E +YN M G+ D W +D M+++ ++ +ET +
Sbjct: 76 QVLAFFNWASNQDGFRKSPE-AYNEMVDFSGQVMMFDVAWYFIDLMKARNVDVTVETFLI 134
Query: 342 VLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLD--MRLFSKVVRVF 399
++ R+ + EA+ + KP + L+ + ++ F + F
Sbjct: 135 LMRRYVRAGLAAEAIHAFNRMEDYNCKPDKIAFSILISILCRERRASQAQEFFDSLKDKF 194
Query: 400 RENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKK 459
+ V T+ +++ G + E ++ M+ G + S + L G+
Sbjct: 195 EPDVIVYTN-----LVRGWCRAGNISEAERVFGEMKVAGIKPNVYTYSIVIDSLCRCGQI 249
Query: 460 DEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDL 519
A++ M +G + SL++ H AG +K + +M ++ G +
Sbjct: 250 TRAHDIFAEMLDAGCQPNSITYNSLMRIHVKAGRTEKVLQVYNQM-KRLGCEPDTVTYNF 308
Query: 520 LVNTYCSKNRAIDACKFV 537
L+ T+C DA K +
Sbjct: 309 LIETHCKDENLEDAIKVI 326
>gi|302774757|ref|XP_002970795.1| hypothetical protein SELMODRAFT_441332 [Selaginella moellendorffii]
gi|302806735|ref|XP_002985099.1| hypothetical protein SELMODRAFT_121414 [Selaginella moellendorffii]
gi|300147309|gb|EFJ13974.1| hypothetical protein SELMODRAFT_121414 [Selaginella moellendorffii]
gi|300161506|gb|EFJ28121.1| hypothetical protein SELMODRAFT_441332 [Selaginella moellendorffii]
Length = 543
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 74/346 (21%), Positives = 139/346 (40%), Gaps = 18/346 (5%)
Query: 303 SYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFA 362
+YN + + ++R +++L EM+ +G+ ++ T ++ + A+ + +
Sbjct: 107 TYNTLIGGFCKAGDMERAFQLLAEMKERGHSPDVVTHSSIVQALCNTGNLSRAMQYFRES 166
Query: 363 MACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVG 422
+ C P L+ + + QL +++ E G V NS++ L
Sbjct: 167 VEC--APDSVLFNILVHGLCKANQLSEA--RQMIEEMSERGIVPDVVTYNSLIDGLCKSY 222
Query: 423 RMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWV 482
RM E ++L+ M + + + + + G A++ ++ M SG+ +
Sbjct: 223 RMEEARQLLETMVKRKVRPNLVTYNTLIYGYCKTGCTGLAHQLIERMIQSGTHPDVVTFN 282
Query: 483 SLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAI-DLLVNTYCSKNRAIDACKFVHNCV 541
SLI G C +DKA + M K+G ++L++ C RA +AC+ + +
Sbjct: 283 SLISGFCQKSKIDKACEVLHLM--KKGLCAPNLVTYNVLISGLCDAGRANEACELLSE-M 339
Query: 542 REYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPFIKYVS------KS 595
+ P TY LI + A + LM + G P I Y + KS
Sbjct: 340 DGRGILPDIITYNSLIGIFCRNFQIEQAFQIQNLMVERGVIP---DGISYCTLAVALLKS 396
Query: 596 GTSDDAIAFLKGM-TSKRFPSMSVVLCLFAAFFQARRHSEAQDLLS 640
D+A A L M + P++ L +RR EA+ LL+
Sbjct: 397 ERFDEAFALLDNMFDAGAIPNLFTFNSLMEGLCCSRRLDEARHLLA 442
>gi|255660870|gb|ACU25604.1| pentatricopeptide repeat-containing protein [Verbena halei]
Length = 476
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 82/385 (21%), Positives = 154/385 (40%), Gaps = 49/385 (12%)
Query: 264 TFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKV 323
+F ++LV V+ + A FFRW E S +H+ ++ + +LGR ++ +
Sbjct: 1 SFDHELVYNVLHS-SKTSEHAFHFFRWVERSNLFEHNRETHLKIIEILGRASKLNHARCI 59
Query: 324 LDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVV 383
L +M KG E + + V ++ + + +V+E+V
Sbjct: 60 LLDMPKKGLEWDEDMWVMMIDSYGKEGIVQESV--------------------------- 92
Query: 384 SKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASS 443
++F K+ E G T N++ K ++ GR + M G +
Sbjct: 93 ------KMFQKM----EELGVERTIKSYNALFKVILRRGRYMMGKRYFNKMLSEGIEPTR 142
Query: 444 NMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQK 503
+ + + + +GK + A F + M++ + ++I G+ +++A F
Sbjct: 143 HTFNVMIWGFFLSGKVETAIRFFEDMKSREISPDVVTYNTMINGYYRVKKMEEAEKYF-- 200
Query: 504 MVEKEGTSHAGYAIDL--LVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLL 561
VE +G + + L+ Y S ++ DA + V ++ + KP TY L+ L
Sbjct: 201 -VEMKGRNIEPTVVTYTTLIKGYVSVDQVDDALRLVEE-MKGFGTKPNAITYSTLLPGLC 258
Query: 562 VQRGFKDALSLLCLMKDHGFPPFVDP-FIKYVS---KSGTSDDAIAFLKGMTSKRFPSMS 617
+A +L M D P + F++ +S KSG D A LK M P+ +
Sbjct: 259 NAEKMSEARVILKEMMDKYLAPTDNSIFMRLISSHCKSGNLDAAADVLKAMIRLSVPTEA 318
Query: 618 VVL-CLFAAFFQARRHSEAQDLLSK 641
L F +A ++ +A LL K
Sbjct: 319 GHYGLLIENFCKAGQYDKAVKLLDK 343
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 105/495 (21%), Positives = 195/495 (39%), Gaps = 75/495 (15%)
Query: 128 FTHEMVLKVLKNLESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLV 187
F HE+V VL + ++S + A FF WV + +T+ ++ I+G + ++
Sbjct: 2 FDHELVYNVLHSSKTS-EHAFHFFRWVERSNLFEHNRETHLKIIEILGRASKLNHARCIL 60
Query: 188 DVMKKKGYGVASHVRNKMTEKFEKEGLESDLEKLKGIFATGSIDNSIEKVASRICKVVRS 247
M KKG + M + + KEG+ + K+ +E++
Sbjct: 61 LDMPKKGLEWDEDMWVMMIDSYGKEGIVQESVKMF---------QKMEELG--------- 102
Query: 248 DIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAM 307
VER ++ N F V+ + G F + E ++ ++N M
Sbjct: 103 ------VERTIKSYNALFK------VILRRGRYMMGKRYFNKMLSEG--IEPTRHTFNVM 148
Query: 308 ASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKN 367
++ + ++M+S+ ++ T ++ + ++EA + Y M +N
Sbjct: 149 IWGFFLSGKVETAIRFFEDMKSREISPDVVTYNTMINGYYRVKKMEEA-EKYFVEMKGRN 207
Query: 368 -KPSVNCCTFLLRKIVVSKQLD--MRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRM 424
+P+V T L++ V Q+D +RL ++ + F N +T +++L L + +M
Sbjct: 208 IEPTVVTYTTLIKGYVSVDQVDDALRLVEEM-KGFGTKPNAIT---YSTLLPGLCNAEKM 263
Query: 425 GECNKILKAMEEGGFIASSNMKSKIAFRLSSA----GKKDEANEFMDHMEASGSDVGDKM 480
E ILK M + + N I RL S+ G D A + + M
Sbjct: 264 SEARVILKEMMDKYLAPTDN---SIFMRLISSHCKSGNLDAAADVLKAMIRLSVPTEAGH 320
Query: 481 WVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNC 540
+ LI+ C AG DKA K++EK D+++ + + A HN
Sbjct: 321 YGLLIENFCKAGQYDKAVKLLDKLIEK----------DIMLRPQSTLHLEPSA----HNP 366
Query: 541 VREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPFIKYVSKSGTSDD 600
+ EY + E + L++ G +D +L L++ H S+ G+ D
Sbjct: 367 MIEYLCNNGQASKAETLVRQLMKLGVQDPTALNTLIRGH-------------SQEGSPDS 413
Query: 601 AIAFLKGMTSKRFPS 615
A LK M ++ S
Sbjct: 414 AFELLKIMLRRKVDS 428
>gi|357473123|ref|XP_003606846.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355507901|gb|AES89043.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 624
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 67/135 (49%), Gaps = 5/135 (3%)
Query: 480 MWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHN 539
M+ +LI GHCV G++D+A ++M + + L+ YC + R ++ K + +
Sbjct: 464 MFNALIDGHCVNGNIDRAFQLLKEM-DNAKVVPDEVTFNTLMQGYC-RERKVEEAKKLLD 521
Query: 540 CVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFV---DPFIKYVSKSG 596
++E +KP H +Y LI + KDAL + M GF P + + I+ SK G
Sbjct: 522 EMKERGIKPDHISYNTLISGYSKRGDMKDALEVFDEMLSLGFDPTLLTYNALIQGYSKIG 581
Query: 597 TSDDAIAFLKGMTSK 611
+D A L+ M SK
Sbjct: 582 EADHAEELLREMQSK 596
Score = 47.8 bits (112), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 49/227 (21%), Positives = 87/227 (38%), Gaps = 39/227 (17%)
Query: 453 LSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSH 512
L GK +A +F+ HME G + ++I G+C+ G + A+ F+ M +K
Sbjct: 227 LCREGKWKKAKDFIGHMEVYGVKPNVVTYNTVINGYCLRGKFEAASKIFKTMKDKNLKPD 286
Query: 513 AGYAIDLLVNTYCSKNRAIDA----CK---------------FVHNCVREYDLKPWHT-- 551
Y + ++ C + R +A CK + C + DL
Sbjct: 287 C-YTYNSFISRLCKERRIEEASGVLCKLLESGLVPNAVTYNALIDGCCNKGDLDKAFAYR 345
Query: 552 -------------TYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPF---IKYVSKS 595
TY LI L +++ ++A ++ M++ G P V + I +
Sbjct: 346 DEMMNRGIVASVFTYNLLIHALFLEKRIEEAEDMIKEMREKGVEPDVVTYNIQINGYCRC 405
Query: 596 GTSDDAIAFLKGMTSKRF-PSMSVVLCLFAAFFQARRHSEAQDLLSK 641
G + A++ M K P++ L F + R SEA++ K
Sbjct: 406 GNAKKALSLFDEMVEKNIRPTVETYTSLIDVFGKRNRMSEAEEKFKK 452
Score = 46.2 bits (108), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 48/212 (22%), Positives = 92/212 (43%), Gaps = 4/212 (1%)
Query: 297 VKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAV 356
V+ D +YN + R + + DEM K +ET ++ F +RN + EA
Sbjct: 388 VEPDVVTYNIQINGYCRCGNAKKALSLFDEMVEKNIRPTVETYTSLIDVFGKRNRMSEAE 447
Query: 357 DLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAM-LNSVL 415
+ ++ ++ P + L+ V+ +D R F + + +N V+ D + N+++
Sbjct: 448 EKFKKSIKEGMLPDIIMFNALIDGHCVNGNID-RAFQLLKEM--DNAKVVPDEVTFNTLM 504
Query: 416 KALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSD 475
+ ++ E K+L M+E G + + S G +A E D M + G D
Sbjct: 505 QGYCRERKVEEAKKLLDEMKERGIKPDHISYNTLISGYSKRGDMKDALEVFDEMLSLGFD 564
Query: 476 VGDKMWVSLIKGHCVAGDLDKAADCFQKMVEK 507
+ +LI+G+ G+ D A + ++M K
Sbjct: 565 PTLLTYNALIQGYSKIGEADHAEELLREMQSK 596
Score = 43.1 bits (100), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 80/385 (20%), Positives = 142/385 (36%), Gaps = 49/385 (12%)
Query: 297 VKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAV 356
+K ++N M ++L RE + + M G + + T V+ + R + A
Sbjct: 213 IKSSIVTFNIMINILCREGKWKKAKDFIGHMEVYGVKPNVVTYNTVINGYCLRGKFEAAS 272
Query: 357 DLYEFAMACKN-KPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVL 415
+++ M KN KP +C T+ + K+ + S V+ E+G V N+++
Sbjct: 273 KIFK-TMKDKNLKP--DCYTYNSFISRLCKERRIEEASGVLCKLLESGLVPNAVTYNALI 329
Query: 416 KALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSD 475
+ G + + M G +AS + + L + +EA + + M G +
Sbjct: 330 DGCCNKGDLDKAFAYRDEMMNRGIVASVFTYNLLIHALFLEKRIEEAEDMIKEMREKGVE 389
Query: 476 VGDKMWVSLIKGHCVAGDLDKAADCFQKMVE----------------------------- 506
+ I G+C G+ KA F +MVE
Sbjct: 390 PDVVTYNIQINGYCRCGNAKKALSLFDEMVEKNIRPTVETYTSLIDVFGKRNRMSEAEEK 449
Query: 507 -----KEGTSHAGYAIDLLVNTYCSK---NRAIDACKFVHNCVREYDLKPWHTTYEELIK 558
KEG + L++ +C +RA K + N + P T+ L++
Sbjct: 450 FKKSIKEGMLPDIIMFNALIDGHCVNGNIDRAFQLLKEMDNA----KVVPDEVTFNTLMQ 505
Query: 559 NLLVQRGFKDALSLLCLMKDHGFPP---FVDPFIKYVSKSGTSDDAIAFLKGMTSKRF-P 614
+R ++A LL MK+ G P + I SK G DA+ M S F P
Sbjct: 506 GYCRERKVEEAKKLLDEMKERGIKPDHISYNTLISGYSKRGDMKDALEVFDEMLSLGFDP 565
Query: 615 SMSVVLCLFAAFFQARRHSEAQDLL 639
++ L + + A++LL
Sbjct: 566 TLLTYNALIQGYSKIGEADHAEELL 590
>gi|115461911|ref|NP_001054555.1| Os05g0132000 [Oryza sativa Japonica Group]
gi|52353663|gb|AAU44229.1| hypothetical protein [Oryza sativa Japonica Group]
gi|113578106|dbj|BAF16469.1| Os05g0132000 [Oryza sativa Japonica Group]
gi|125550727|gb|EAY96436.1| hypothetical protein OsI_18334 [Oryza sativa Indica Group]
Length = 637
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 66/313 (21%), Positives = 121/313 (38%), Gaps = 41/313 (13%)
Query: 289 RWAEESGFVKHD---ESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGR 345
R E GF+ ++SYNA+ L E + + V++EM +G + + T ++
Sbjct: 207 RVEEARGFLAETVPVQASYNAVVHALCGEFRMWEVFSVVNEMVQRGLQPNVVTYTTIVDA 266
Query: 346 FSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNV 405
F CK + C L R + + ++ F+ +V+ F E+G V
Sbjct: 267 F------------------CKARELRMACAILARMVSMGCTPNVLTFTALVKGFFEDGKV 308
Query: 406 LTDAM-----------------LNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSK 448
DA+ N +++ L +G + +M+ + ++ S
Sbjct: 309 -HDALSMWHWMVDEGWAPSTISYNVLIRGLCCIGDLKGALDFFNSMKRNALLPNATTYST 367
Query: 449 IAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKE 508
+ S+AG D A + M++SG ++ ++I C D+A KM+
Sbjct: 368 LVDGFSNAGDLDGAMLIWNEMKSSGCKPNVVVYTNMIDVLCKKMMFDQAESLIDKMLMDN 427
Query: 509 GTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKD 568
+ + L+ C R A H +R P TY EL+ L + KD
Sbjct: 428 CPPNT-VTFNTLIGRLCDCGRVGRALNVFHG-MRRNGCHPNDRTYNELLHGLFREGNHKD 485
Query: 569 ALSLLCLMKDHGF 581
A +++ M ++GF
Sbjct: 486 AFAMVIEMLNNGF 498
>gi|449523421|ref|XP_004168722.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
mitochondrial-like [Cucumis sativus]
Length = 628
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 71/323 (21%), Positives = 120/323 (37%), Gaps = 57/323 (17%)
Query: 318 DRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFL 377
D ++ M+ KG +ETC +L F + N + A LY + K SV TF
Sbjct: 168 DEAFECFYTMKEKGVLPTIETCNSLLSLFLKLNRTEAAWVLYAEMFRLRIKSSVY--TFN 225
Query: 378 LRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEG 437
+ V+ K+ ++ V +G N+++ S GR+ + IL M+
Sbjct: 226 IMINVLCKEGKLKKAKDFVGHMETSGVKPNIVTYNTIVHGYCSSGRVEAADAILTTMKRQ 285
Query: 438 GFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKA 497
S + + G+ +EA++ + M G ++ +LI G C G+LD A
Sbjct: 286 KIEPDSFTYGSLISGMCKQGRLEEASKIFEEMVQKGLRPSAVIYNTLIDGFCNKGNLDMA 345
Query: 498 ----------------------------------ADCFQKMVEKEGTSHAGYAIDLLVNT 523
A+C K ++++G S ++L+N
Sbjct: 346 SAYKDEMLKKGISPTMSTYNSLIHALFMEQRTDEAECMIKEIQEKGISPDAITYNILING 405
Query: 524 YCSKNRAIDACK--FVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGF 581
YC R +A K +H+ + +KP TY L+ L + K+A
Sbjct: 406 YC---RCANAKKAFLLHDEMLASGIKPTKKTYTSLLHVLSKKNRMKEA------------ 450
Query: 582 PPFVDPFIKYVSKSGTSDDAIAF 604
D K ++ G DAI F
Sbjct: 451 ----DDLFKKITSEGVLPDAIMF 469
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 60/281 (21%), Positives = 122/281 (43%), Gaps = 16/281 (5%)
Query: 369 PSVNCCTFLLRKIVVSKQLDMR--LFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGE 426
P++ C LL + + + L++++ R+ R +V T N ++ L G++ +
Sbjct: 184 PTIETCNSLLSLFLKLNRTEAAWVLYAEMFRL-RIKSSVYT---FNIMINVLCKEGKLKK 239
Query: 427 CNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIK 486
+ ME G + + I S+G+ + A+ + M+ + + SLI
Sbjct: 240 AKDFVGHMETSGVKPNIVTYNTIVHGYCSSGRVEAADAILTTMKRQKIEPDSFTYGSLIS 299
Query: 487 GHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDL 546
G C G L++A+ F++MV+K G + + L++ +C+K +D + + + +
Sbjct: 300 GMCKQGRLEEASKIFEEMVQK-GLRPSAVIYNTLIDGFCNKGN-LDMASAYKDEMLKKGI 357
Query: 547 KPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPFIKYVSKSG---TSDDAIA 603
P +TY LI L +++ +A ++ +++ G P D + +G ++ A
Sbjct: 358 SPTMSTYNSLIHALFMEQRTDEAECMIKEIQEKGISP--DAITYNILINGYCRCANAKKA 415
Query: 604 FL---KGMTSKRFPSMSVVLCLFAAFFQARRHSEAQDLLSK 641
FL + + S P+ L + R EA DL K
Sbjct: 416 FLLHDEMLASGIKPTKKTYTSLLHVLSKKNRMKEADDLFKK 456
Score = 48.1 bits (113), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 94/420 (22%), Positives = 169/420 (40%), Gaps = 21/420 (5%)
Query: 153 WVLEKESERLSSK----TYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRNKMTEK 208
WVL E RL K T+N+M+ ++ G +++ V M+ G N +
Sbjct: 206 WVLYAEMFRLRIKSSVYTFNIMINVLCKEGKLKKAKDFVGHMETSGVKPNIVTYNTIVHG 265
Query: 209 FEKEGLESDLEKLKGIFATGSIDN---SIEKVASRICKVVR----SDIWGDDVERQLRDL 261
+ G + + I+ + + S +CK R S I+ + V++ LR
Sbjct: 266 YCSSGRVEAADAILTTMKRQKIEPDSFTYGSLISGMCKQGRLEEASKIFEEMVQKGLRPS 325
Query: 262 NVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFW 321
V + N L+ +K + A ++ + S+YN++ L E D
Sbjct: 326 AVIY-NTLIDGFCNKGNLDMASA---YKDEMLKKGISPTMSTYNSLIHALFMEQRTDEAE 381
Query: 322 KVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKI 381
++ E++ KG + T ++ + K+A L++ +A KP+ T LL
Sbjct: 382 CMIKEIQEKGISPDAITYNILINGYCRCANAKKAFLLHDEMLASGIKPTKKTYTSLLH-- 439
Query: 382 VVSKQLDMRLFSKVVRVFRENGNVLTDA-MLNSVLKALISVGRMGECNKILKAMEEGGFI 440
V+SK+ M+ + + G VL DA M N+++ S + ++LK M+
Sbjct: 440 VLSKKNRMKEADDLFKKITSEG-VLPDAIMFNALIDGHCSNSNVKGAFELLKDMDRMKVP 498
Query: 441 ASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADC 500
+ I GK +EA E D M+ G + +LI G+ GD+ A
Sbjct: 499 PDEVTFNTIMQGHCREGKVEEARELFDEMKRRGIKPDHISFNTLISGYSRRGDIKDAFRV 558
Query: 501 FQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNL 560
+M++ G + + LV C KN+ D + + + + P TTY LI+ +
Sbjct: 559 RNEMLDT-GFNPTVLTYNALVQGLC-KNQEGDLAEELLKEMVSKGMTPDDTTYFTLIEGI 616
>gi|449438705|ref|XP_004137128.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
mitochondrial-like [Cucumis sativus]
Length = 628
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 79/367 (21%), Positives = 138/367 (37%), Gaps = 45/367 (12%)
Query: 318 DRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFL 377
D ++ M+ KG +ETC +L F + N + A LY + K SV TF
Sbjct: 168 DEAFECFYTMKEKGVLPTIETCNSLLSLFLKLNRTEAAWVLYAEMFRLRIKSSVY--TFN 225
Query: 378 LRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEG 437
+ V+ K+ ++ V +G N+++ S GR+ + IL M+
Sbjct: 226 IMINVLCKEGKLKKAKDFVGHMETSGVKPNIVTYNTIVHGYCSSGRVEAADAILTTMKRQ 285
Query: 438 GFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKA 497
S + + G+ +EA++ + M G ++ +LI G C G+LD A
Sbjct: 286 KIEPDSFTYGSLISGMCKQGRLEEASKIFEEMVQKGLRPSAVIYNTLIDGFCNKGNLDMA 345
Query: 498 ----------------------------------ADCFQKMVEKEGTSHAGYAIDLLVNT 523
A+C K ++++G S ++L+N
Sbjct: 346 SAYKDEMLKKGISPTMSTYNSLIHALFMEQRTDEAECMIKEIQEKGISPDAITYNILING 405
Query: 524 YCSKNRAIDACK--FVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGF 581
YC R +A K +H+ + +KP TY L+ L + K+A L + G
Sbjct: 406 YC---RCANAKKAFLLHDEMLASGIKPTKKTYTSLLHVLSKKNRMKEADDLFKKITSEGV 462
Query: 582 PPFVDPFIKYVSKSGTSDD---AIAFLKGMTSKRFPSMSVVL-CLFAAFFQARRHSEAQD 637
P V F + ++ + A LK M + P V + + + EA++
Sbjct: 463 LPDVIMFNALIDGHCSNSNVKGAFELLKDMDRMKVPPDEVTFNTIMQGHCREGKVEEARE 522
Query: 638 LLSKCPR 644
L + R
Sbjct: 523 LFDEMKR 529
Score = 46.6 bits (109), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 93/420 (22%), Positives = 168/420 (40%), Gaps = 21/420 (5%)
Query: 153 WVLEKESERLSSK----TYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRNKMTEK 208
WVL E RL K T+N+M+ ++ G +++ V M+ G N +
Sbjct: 206 WVLYAEMFRLRIKSSVYTFNIMINVLCKEGKLKKAKDFVGHMETSGVKPNIVTYNTIVHG 265
Query: 209 FEKEGLESDLEKLKGIFATGSIDN---SIEKVASRICKVVR----SDIWGDDVERQLRDL 261
+ G + + I+ + + S +CK R S I+ + V++ LR
Sbjct: 266 YCSSGRVEAADAILTTMKRQKIEPDSFTYGSLISGMCKQGRLEEASKIFEEMVQKGLRPS 325
Query: 262 NVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFW 321
V + N L+ +K + A ++ + S+YN++ L E D
Sbjct: 326 AVIY-NTLIDGFCNKGNLDMASA---YKDEMLKKGISPTMSTYNSLIHALFMEQRTDEAE 381
Query: 322 KVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKI 381
++ E++ KG + T ++ + K+A L++ +A KP+ T LL
Sbjct: 382 CMIKEIQEKGISPDAITYNILINGYCRCANAKKAFLLHDEMLASGIKPTKKTYTSLLH-- 439
Query: 382 VVSKQLDMRLFSKVVRVFRENGNVLTDA-MLNSVLKALISVGRMGECNKILKAMEEGGFI 440
V+SK+ M+ + + G VL D M N+++ S + ++LK M+
Sbjct: 440 VLSKKNRMKEADDLFKKITSEG-VLPDVIMFNALIDGHCSNSNVKGAFELLKDMDRMKVP 498
Query: 441 ASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADC 500
+ I GK +EA E D M+ G + +LI G+ GD+ A
Sbjct: 499 PDEVTFNTIMQGHCREGKVEEARELFDEMKRRGIKPDHISFNTLISGYSRRGDIKDAFRV 558
Query: 501 FQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNL 560
+M++ G + + LV C KN+ D + + + + P TTY LI+ +
Sbjct: 559 RNEMLDT-GFNPTVLTYNALVQGLC-KNQEGDLAEELLKEMVSKGMTPDDTTYFTLIEGI 616
>gi|224084978|ref|XP_002307458.1| predicted protein [Populus trichocarpa]
gi|222856907|gb|EEE94454.1| predicted protein [Populus trichocarpa]
Length = 440
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 103/482 (21%), Positives = 183/482 (37%), Gaps = 80/482 (16%)
Query: 112 SDVNDISKQLELSGVVFTHEMVLKVLKNLESSPDEARRFFNWVLEKESERLSSKTYNLML 171
S V + L+ SGV + ++V VLK E++ A RFF W ++ S K ++ ++
Sbjct: 4 SSVVTLDTALDQSGVRVSEQIVEDVLKKFENAGMVAYRFFEWAEKQRHYNHSVKAFHTVI 63
Query: 172 RIVGVHGLVQEFWGLVDVMKKK-------------GYGVASHVRNKMT--EKFEKEGLES 216
+ Q W +V VMK K Y A V + +K +
Sbjct: 64 DSLAKIRQYQLMWDVVKVMKSKRMVNVETFCIIMRKYARAQKVEEAVYTFNIMDKYDVPP 123
Query: 217 DLEKLKGIFATGSIDNSIEKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDK 276
+L G+ + ++ K +I+ +R + D + T+S +++
Sbjct: 124 NLAAFNGLLSALCKSKNVRKA---------QEIFDSIKDRFVPD-SKTYS-----ILLEG 168
Query: 277 LGDEPK--KALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEM 334
G +P KA FR +G + D +Y M VL + +D +++EM S
Sbjct: 169 WGKDPNLPKAREIFREMVSNG-CRPDIVTYGIMVDVLCKAGRVDEALGIVNEMDST---- 223
Query: 335 EMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSK 394
CK P F+ +V + ++ R+
Sbjct: 224 -----------------------------VCKPTP------FIYSVLVHTYGIENRIEDA 248
Query: 395 VVRVFR-ENGNVLTD-AMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFR 452
V EN + D A+ N+++ A R+ ++L M+ G +S + I
Sbjct: 249 VSTFLEMENNGIEPDVAVYNALIGAFCKANRLKNVYRVLNEMDCKGVTPNSRTFNIILSS 308
Query: 453 LSSAGKKDEANE-FMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTS 511
L G+ DEA F+ ++ D + +IK C +L KA ++ M K
Sbjct: 309 LIGRGETDEAYRVFLRMIKVCEPDAD--TYTMMIKMFCERDELKKALKVWKYMKLKRFMP 366
Query: 512 HAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALS 571
+ + +L+N C K AC + + E ++P T+ L + LL++ G +D L
Sbjct: 367 -SMHTFQVLINGLCEKGDVTQACVLLEEMI-EKGIRPSGVTFGRL-RQLLIKEGREDVLK 423
Query: 572 LL 573
L
Sbjct: 424 FL 425
Score = 50.1 bits (118), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 90/392 (22%), Positives = 153/392 (39%), Gaps = 29/392 (7%)
Query: 263 VTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWK 322
V S +V+ V+ K + A FF WAE+ H +++ + L + W
Sbjct: 18 VRVSEQIVEDVLKKFENAGMVAYRFFEWAEKQRHYNHSVKAFHTVIDSLAKIRQYQLMWD 77
Query: 323 VLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIV 382
V+ M+SK + +ET ++ +++ V+EAV Y F + K N F
Sbjct: 78 VVKVMKSKRM-VNVETFCIIMRKYARAQKVEEAV--YTFNIMDKYDVPPNLAAF------ 128
Query: 383 VSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIAS 442
+ L SK VR +E + + D + I + G+ + KA E + S
Sbjct: 129 -NGLLSALCKSKNVRKAQEIFDSIKDRFVPDSKTYSILLEGWGKDPNLPKAREIFREMVS 187
Query: 443 SNMKSKIAFR------LSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDK 496
+ + I L AG+ DEA ++ M+++ ++ L+ + + ++
Sbjct: 188 NGCRPDIVTYGIMVDVLCKAGRVDEALGIVNEMDSTVCKPTPFIYSVLVHTYGIENRIED 247
Query: 497 AADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLK---PWHTTY 553
A F +M E G + L+ +C NR K V+ + E D K P T+
Sbjct: 248 AVSTFLEM-ENNGIEPDVAVYNALIGAFCKANR----LKNVYRVLNEMDCKGVTPNSRTF 302
Query: 554 EELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPF---IKYVSKSGTSDDAIAFLKGMTS 610
+I + L+ RG D + L P D + IK + A+ K M
Sbjct: 303 -NIILSSLIGRGETDEAYRVFLRMIKVCEPDADTYTMMIKMFCERDELKKALKVWKYMKL 361
Query: 611 KRF-PSMSVVLCLFAAFFQARRHSEAQDLLSK 641
KRF PSM L + ++A LL +
Sbjct: 362 KRFMPSMHTFQVLINGLCEKGDVTQACVLLEE 393
>gi|218184541|gb|EEC66968.1| hypothetical protein OsI_33625 [Oryza sativa Indica Group]
Length = 1351
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 120/593 (20%), Positives = 223/593 (37%), Gaps = 104/593 (17%)
Query: 131 EMVLKVLKNLESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLVDVM 190
E V+ L++ + P EA F + ++ + N ML ++ HG V + + DVM
Sbjct: 137 EDVIHALRSADG-PAEALERFRSAARRPRVVHTTASCNYMLDLMRDHGRVGDMAEVFDVM 195
Query: 191 KKK--------------GYGVASHVRNK--MTEKFEKEGLESDLEKLKGIFATGSIDNSI 234
+++ G GV +R+ ++ G+ + G+ + +
Sbjct: 196 QRQIVKANVGTFAAIFGGLGVEGGLRSAPVALPVMKEAGIVLNAYTYNGLVYF-LVKSGF 254
Query: 235 EKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEES 294
++ A + KV+ D V +R T+S +V F + + + L R E
Sbjct: 255 DREALEVYKVMMVD----GVVPSVR----TYSVLMVAFGKRR---DVETVLWLLREMEAH 303
Query: 295 GFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKE 354
G VK + SY VLG+ D +++L EM ++G + ++ T ++ + + +
Sbjct: 304 G-VKPNVYSYTICIRVLGQARRFDEAYRILAEMENEGCKPDVITHTVLIQVLCDAGRISD 362
Query: 355 AVDLYEFAMACKNKPSVNCCTFLLRKI------------------------VVSKQLDMR 390
A D++ KP LL K VV+ +
Sbjct: 363 AKDVFWKMKKSDQKPDRVTYITLLDKFADNGESQSVMEIWNAMKADGYNDNVVAYTAVID 422
Query: 391 LFSKVVRVF---------RENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGG--- 438
+V RVF ++ G V NS++ + R G+ ++ K M+ G
Sbjct: 423 ALCQVGRVFEALEMFDEMKQKGIVPEQYSYNSLISGFLKADRFGDALELFKYMDIHGPKP 482
Query: 439 ----------FIASSN-----------MKSK-----------IAFRLSSAGKKDEANEFM 466
+ S MKSK + F L+ +G+ A
Sbjct: 483 NGYTHVLFINYYGKSGESIKAIQRYELMKSKGIVPDVVAGNAVLFGLAKSGRLGMAKRVF 542
Query: 467 DHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCS 526
++A G + +IK A D+A F M+E ++ L++T
Sbjct: 543 HELKAMGVSPDTITYTMMIKCCSKASKFDEAVKIFYDMIENNCVPDV-LVVNSLIDTLYK 601
Query: 527 KNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFV- 585
R +A + + ++E +L+P TY L+ L + K+ + LL M +PP +
Sbjct: 602 AGRGDEAWQIFYQ-LKEMNLEPTDGTYNTLLAGLGREGKVKEVMHLLEEMYHSNYPPNLI 660
Query: 586 --DPFIKYVSKSGTSDDAIAFLKGMTSKR-FPSMSVVLCLFAAFFQARRHSEA 635
+ + + K+G +DA+ L MT+K P +S + + R++EA
Sbjct: 661 TYNTILDCLCKNGAVNDALDMLYSMTTKGCIPDLSSYNTVIYGLVKEERYNEA 713
Score = 56.2 bits (134), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 50/230 (21%), Positives = 98/230 (42%), Gaps = 5/230 (2%)
Query: 375 TFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAM 434
T+ L + K + + KV G T N+++ L+ R+ + + +
Sbjct: 871 TYNLLLDAMGKSMRIEEMLKVQEEMHRKGYESTYVTYNTIISGLVKSRRLEQAIDLYYNL 930
Query: 435 EEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDL 494
GF + + L AG+ ++A + M G ++ L+ GH +AG+
Sbjct: 931 MSQGFSPTPCTYGPLLDGLLKAGRIEDAENLFNEMLEYGCKANCTIYNILLNGHRIAGNT 990
Query: 495 DKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYE 554
+K FQ MV+ +G + + ++++T C + D + + E L+P TY
Sbjct: 991 EKVCHLFQDMVD-QGINPDIKSYTIIIDTLCKAGQLNDGLTYFRQLL-EMGLEPDLITYN 1048
Query: 555 ELIKNLLVQRGFKDALSLLCLMKDHGFPPFV---DPFIKYVSKSGTSDDA 601
LI L + ++A+SL M+ G P + + I ++ K+G + +A
Sbjct: 1049 LLIDGLGKSKRLEEAVSLFNEMQKKGIVPNLYTYNSLILHLGKAGKAAEA 1098
Score = 46.2 bits (108), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 77/366 (21%), Positives = 150/366 (40%), Gaps = 54/366 (14%)
Query: 278 GDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEME 337
GDE + IF++ E + ++ + +YN + + LGRE + +L+EM Y +
Sbjct: 605 GDEAWQ--IFYQLKEMN--LEPTDGTYNTLLAGLGREGKVKEVMHLLEEMYHSNYPPNLI 660
Query: 338 TCVKVLGRFSERNMVKEAVDLYEFAMACKN-KPSVNCCTFLLRKIVVSKQLDMRLFSKVV 396
T +L + V +A+D+ ++M K P ++ ++ +V ++ +++
Sbjct: 661 TYNTILDCLCKNGAVNDALDML-YSMTTKGCIPDLSSYNTVIYGLVKEER-----YNEAF 714
Query: 397 RVFRENGNVLTD--AMLNSVLKALISVGRMGECNKILKA--MEEG-------------GF 439
+F + VL A L ++L + + +G M E I+K ++ G G
Sbjct: 715 SIFCQMKKVLIPDYATLCTILPSFVKIGLMKEALHIIKEYFLQPGSKTDRSSCHSLMEGI 774
Query: 440 IASSNMKSKIAFR--LSSAG-------------------KKDEANEFMDHMEASGSDVGD 478
+ + + I F ++S+G K EA+E + ++ G +
Sbjct: 775 LKKAGTEKSIEFAEIIASSGITLDDFFLCPLIKHLCKQKKALEAHELVKKFKSFGVSLKT 834
Query: 479 KMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVH 538
+ SLI G +D A F +M E G + +LL++ K+ I+ V
Sbjct: 835 GSYNSLICGLVDENLIDIAEGLFAEMKEL-GCGPDEFTYNLLLDAM-GKSMRIEEMLKVQ 892
Query: 539 NCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPP---FVDPFIKYVSKS 595
+ + + TY +I L+ R + A+ L + GF P P + + K+
Sbjct: 893 EEMHRKGYESTYVTYNTIISGLVKSRRLEQAIDLYYNLMSQGFSPTPCTYGPLLDGLLKA 952
Query: 596 GTSDDA 601
G +DA
Sbjct: 953 GRIEDA 958
>gi|225437663|ref|XP_002279193.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g02420-like [Vitis vinifera]
Length = 526
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 96/395 (24%), Positives = 153/395 (38%), Gaps = 46/395 (11%)
Query: 213 GLESDLEKLKGIF---------ATGSIDNSIEKVASRICKVVRSDIWGDDVERQLRDLNV 263
GL S+ + +F A ++DN + RI V S ++++ L+ V
Sbjct: 29 GLNSNPQNPSSVFSRLYWSETIAETTVDNGDVETVFRI---VSSASSTRNLKQSLKSSGV 85
Query: 264 TFSNDLVKFVVDKL---GDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRF 320
SNDL+ V+ ++ P +AL FF + + H S + M +LGR D+
Sbjct: 86 FLSNDLIDKVLKRVRFSHGNPFQALAFFNYTNKRKGFYHTPFSLDTMLYILGRSRRFDQI 145
Query: 321 WKVLDEMRSKGYEMEMETCVK-VLGRFSERNMVKEAVDLY--------EFAMACKNKPSV 371
W++L +MR K + V+ VLGR ++ VK+ V+ + EF AC N
Sbjct: 146 WELLVDMRRKDQSLISPRSVQVVLGRIAKVCSVKQTVESFRKFKKLVPEFDTACFNA--- 202
Query: 372 NCCTFLLRKIVVSKQL-DMR-LFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNK 429
LLR + K + D R ++ + FR + N +L S E
Sbjct: 203 -----LLRTLCQEKSMRDARNVYHSLKHDFRPDLRT-----FNILLSGWKSA---EEAEG 249
Query: 430 ILKAMEEGGFIASSNMKSKIAFRLSSAGKKDE-ANEFMDHMEASGSDVGDKMWVSLIKGH 488
M E G + + + G++ E A + +D M + S+I G
Sbjct: 250 FFDEMREMG-VEPDVVSYNCLIDVYCKGREIERAYKVIDKMRDEQISPDVISYTSIIGGL 308
Query: 489 CVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKP 548
+ G DKA D ++M E G A + + +C NR DA + V + L P
Sbjct: 309 GLVGQPDKARDVLKEMKEY-GCYPDVAAYNAAIRNFCIANRLGDADGLMDEMVGK-GLSP 366
Query: 549 WHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPP 583
TTY + + L MK G P
Sbjct: 367 NATTYNLFFRCFYWSNDLGRSCGLYQRMKKTGCLP 401
Score = 47.0 bits (110), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 70/285 (24%), Positives = 124/285 (43%), Gaps = 25/285 (8%)
Query: 74 DPKNPNFRNPMICSYSSEPAMEQK--ESDFTVVSDIFYKFSDVNDISKQLELSGVVFTHE 131
+P+NP+ + Y SE E D V I S ++ + L+ SGV +++
Sbjct: 33 NPQNPSSVFSRL--YWSETIAETTVDNGDVETVFRIVSSASSTRNLKQSLKSSGVFLSND 90
Query: 132 MVLKVLKNLESS---PDEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLVD 188
++ KVLK + S P +A FFN+ +++ + + + ML I+G + W L+
Sbjct: 91 LIDKVLKRVRFSHGNPFQALAFFNYTNKRKGFYHTPFSLDTMLYILGRSRRFDQIWELLV 150
Query: 189 VMKKKGYGVASH-----VRNKMTEKFE-KEGLES--DLEKLKGIFATGSIDNSIEKVASR 240
M++K + S V ++ + K+ +ES +KL F T + + +
Sbjct: 151 DMRRKDQSLISPRSVQVVLGRIAKVCSVKQTVESFRKFKKLVPEFDTACFNALLRTLCQE 210
Query: 241 ICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLG-DEPKKALIFFRWAEESGFVKH 299
K +R D L F DL F + G ++A FF E G V+
Sbjct: 211 --KSMR------DARNVYHSLKHDFRPDLRTFNILLSGWKSAEEAEGFFDEMREMG-VEP 261
Query: 300 DESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLG 344
D SYN + V + I+R +KV+D+MR + ++ + ++G
Sbjct: 262 DVVSYNCLIDVYCKGREIERAYKVIDKMRDEQISPDVISYTSIIG 306
>gi|255546727|ref|XP_002514422.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223546418|gb|EEF47918.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 809
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 84/437 (19%), Positives = 164/437 (37%), Gaps = 100/437 (22%)
Query: 270 VKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVL------------------ 311
V ++ L +EP A +F +ESG+ HD +Y A+ +L
Sbjct: 62 VVITLNNLRNEPSLAFSYFNQLKESGY-SHDPYTYAAIVRILCFWGWSRKLDSILMEIIK 120
Query: 312 --GRED--CIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKN 367
G D ++ F + D + ++ + + ++ ++ M +A D+ C
Sbjct: 121 KDGNLDFGIVNLFEALGDGIANESFSVLVQVSDALIKVCVASGMFDQAFDVLLQTKHCGF 180
Query: 368 KPSVNCCTFLLRKIVVSKQLDMRL-FSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGE 426
P + C FL+ ++V S+++DM + + ++ F N N D +K G + E
Sbjct: 181 APQILSCNFLMNRLVESRKVDMAIAIYRQLKAFGLNPN---DYTYTIAIKGFCRKGNLAE 237
Query: 427 CNKILKAMEEGGFIASS------------NMKSKIAFRL--------------------- 453
+ + MEE G +S + +S + F++
Sbjct: 238 AIDVFRDMEESGVTPNSFSYTTFIEGLCLHGRSDLGFKVLQDVINAKIPMDVFAYTVVIR 297
Query: 454 --SSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEK---- 507
S K EA + ME G ++ +LI G+C+ G+L KA +MV K
Sbjct: 298 GFCSEMKLKEAESILREMEKQGFAPDVYVYCALISGYCMVGNLLKALALHDEMVSKGVKT 357
Query: 508 ---------EGTSHAGYA---------------------IDLLVNTYCSKNRAIDACKFV 537
+G S G A +++++ C + +A + +
Sbjct: 358 NCVILSSILQGLSQMGMASEVANQFKEFKKMGIFFDEACYNVVMDALCKLGKVEEAVELL 417
Query: 538 HNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFV---DPFIKYVSK 594
++ + P Y +I ++ DAL++ MKD G P + + S+
Sbjct: 418 VE-MKGKKMVPDIINYTTVISGYFLKGKVVDALNIYREMKDIGHKPDIVTYNVLAGGFSR 476
Query: 595 SGTSDDAIAFLKGMTSK 611
+G + +A++ L M ++
Sbjct: 477 NGLTQEALSLLNYMETQ 493
Score = 43.1 bits (100), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 51/238 (21%), Positives = 103/238 (43%), Gaps = 16/238 (6%)
Query: 326 EMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSK 385
EM+ G++ ++ T + G FS + +EA+ L + KP ++ + +
Sbjct: 454 EMKDIGHKPDIVTYNVLAGGFSRNGLTQEALSLLNYMETQGVKPDTVTHNMIIEGLCIGG 513
Query: 386 QLD--MRLFSKVVRVFRENGNVLTDAML--NSVLKALISVGRMGECNKILKAMEEGGFIA 441
++D F + EN + + + N V KA + R+ + +ILK + F
Sbjct: 514 KVDDAQAFFDNLEEKCLENYSAMVNGYCEANHVNKAFALLIRLSKQGRILK---KASFF- 569
Query: 442 SSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCF 501
K+ L S G ++A ++ M A + M+ +I AG+++KA F
Sbjct: 570 ------KLLGNLCSEGDSEKALCLLETMVALNINPTMIMYSKVIGALFQAGEMEKAQYVF 623
Query: 502 QKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKN 559
+V++ G + +++N YC N+ +A + + ++ ++P TY L+ N
Sbjct: 624 NMLVDR-GLAPDVITYTIMINGYCRMNKMKEAWHVLGD-MKNRGIEPDVITYTVLLNN 679
Score = 39.3 bits (90), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 75/367 (20%), Positives = 130/367 (35%), Gaps = 64/367 (17%)
Query: 282 KKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVK 341
K+A R E+ GF D Y A+ S + + + DEM SKG +
Sbjct: 306 KEAESILREMEKQGFAP-DVYVYCALISGYCMVGNLLKALALHDEMVSKGVKTNCVILSS 364
Query: 342 VLGRFSERNMVKEAVDLYE--------FAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFS 393
+L S+ M E + ++ F AC N +V+ +
Sbjct: 365 ILQGLSQMGMASEVANQFKEFKKMGIFFDEACYN-------------VVMDALCKLGKVE 411
Query: 394 KVVRVFRE-NGNVLTDAMLN--SVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIA 450
+ V + E G + ++N +V+ G++ + I + M++ G + +A
Sbjct: 412 EAVELLVEMKGKKMVPDIINYTTVISGYFLKGKVVDALNIYREMKDIGHKPDIVTYNVLA 471
Query: 451 FRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGT 510
S G EA +++ME G +I+G C+ G +D A F + EK
Sbjct: 472 GGFSRNGLTQEALSLLNYMETQGVKPDTVTHNMIIEGLCIGGKVDDAQAFFDNLEEKCLE 531
Query: 511 SHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDAL 570
+++ +VN YC N A + ++ +L + F L
Sbjct: 532 NYSA-----MVNGYCEANHVNKAFALLIRLSKQ--------------GRILKKASFFKLL 572
Query: 571 SLLCLMKDHGFPPFVDPFIKYVSKSGTSDDAIAFLKGMTSKRF-PSMSVVLCLFAAFFQA 629
LC G S+ A+ L+ M + P+M + + A FQA
Sbjct: 573 GNLC-------------------SEGDSEKALCLLETMVALNINPTMIMYSKVIGALFQA 613
Query: 630 RRHSEAQ 636
+AQ
Sbjct: 614 GEMEKAQ 620
>gi|224069254|ref|XP_002302938.1| predicted protein [Populus trichocarpa]
gi|222844664|gb|EEE82211.1| predicted protein [Populus trichocarpa]
Length = 599
Score = 58.2 bits (139), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 96/475 (20%), Positives = 190/475 (40%), Gaps = 36/475 (7%)
Query: 144 PDEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLVD-VMKKKGYGVASHVR 202
P FF+++ + + ++Y M+ + H + Q+ L+ V+ +KG G AS V
Sbjct: 90 PKSLLSFFDFLSSYPTFSHTVQSYCSMVHFLIAHRMNQQAESLLHFVVSRKGKGSASSVF 149
Query: 203 NKMTEKFEKEGLESDLEKLKGIFATGSIDNSIEKVASRICKVVRSDIWGDDVE--RQLRD 260
+ E KG ++ + +++ V + V D ++ R +
Sbjct: 150 ASILET-------------KGTLSSSFVFDALMSVYTEFGYV------SDAIQCFRLTKK 190
Query: 261 LNVTFSNDLVKFVVDKL--GDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCID 318
N+ + K +++++ P AL F+ +SG+ + ++N + + L +E +
Sbjct: 191 HNLKIPFNGCKCLLERMIKMSSPMVALEFYLEILDSGY-PPNVYTFNVLMNRLCKEGKVK 249
Query: 319 RFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLL 378
+ DE+R G + + ++ + + ++E L + P V + L+
Sbjct: 250 DAQLIFDEIRKTGLQPTAVSFNTLINGYCKSGNLEEGFRLKMVMEEFRVFPDVFTYSALI 309
Query: 379 RKIVVSKQLD--MRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEE 436
+ QL+ LF ++ + G V D +++ GR+ +I + M
Sbjct: 310 DGLCKECQLEDANHLFKEMC----DRGLVPNDVTFTTLINGQCKNGRVDLALEIYQQMFT 365
Query: 437 GGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDK 496
G A + + + L G EA +F+ M G + +L+ G C GDL+
Sbjct: 366 KGLKADLVLYNTLIDGLCKGGYFREARKFVGEMTKRGLIPDKFTYTTLLDGSCKEGDLEL 425
Query: 497 AADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEEL 556
A + ++MV KEG A +++ C + +DA + + +R LKP TY +
Sbjct: 426 ALEMRKEMV-KEGIQLDNVAFTAIISGLCRDGKIVDAERTLREMLRA-GLKPDDGTYTMV 483
Query: 557 IKNLLVQRGFKDALSLLCLMKDHGFPPFV---DPFIKYVSKSGTSDDAIAFLKGM 608
+ + K LL M+ G P V + + + K G +A L M
Sbjct: 484 MDGFCKKGDVKMGFKLLKEMQSDGHIPGVITYNVLMNGLCKQGQVKNADMLLNAM 538
>gi|297832060|ref|XP_002883912.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297329752|gb|EFH60171.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 623
Score = 58.2 bits (139), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 95/428 (22%), Positives = 168/428 (39%), Gaps = 40/428 (9%)
Query: 218 LEKLKGIFATGSIDNSIEKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKL 277
L K KG N I + SR+ ++ + ++ D+ R NV N ++ V+ K
Sbjct: 181 LMKEKGFDPKTETCNHILSLLSRLNRIENAWVFYADMYRMEIKSNVYTFNIMIN-VLCKE 239
Query: 278 GDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEME 337
G + KKA F E G +K +YN + I+ ++ EM+SKG++ +++
Sbjct: 240 G-KLKKAKGFLGIMESFG-IKPTIVTYNTLVQGYSLRGRIEGARMIISEMKSKGFQPDLQ 297
Query: 338 TCVKVL------GRFSE--RNM-----VKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVS 384
T +L GR SE R M V ++V C N + F R +V
Sbjct: 298 TYNPILSWMCNEGRASEVLREMKGIGLVPDSVSYNILIRGCSNNGDLET-AFAYRDEMVK 356
Query: 385 KQLDMRLFSK------------------VVRVFRENGNVLTDAMLNSVLKALISVGRMGE 426
+ + ++ ++R RE G VL N V+ G +
Sbjct: 357 QGMVPTFYTYNTLIHGLFMENKIEAAEILIREIREKGIVLDSVTYNIVINGYCQHGDAKK 416
Query: 427 CNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIK 486
+ M G + + + + L K EA+E + + G M +L+
Sbjct: 417 AFALHDEMMTDGIKPTQFTYTSLIYVLCRRNKTREADELFEKVVGKGMKPDLVMMNTLMD 476
Query: 487 GHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDL 546
GHC G++D+A ++M ++ + L+ C + + +A + + R +
Sbjct: 477 GHCATGNMDRAFSLLKEM-DRMNIDPDDVTYNCLMRGLCGEGKFEEARELMGEMKRR-GI 534
Query: 547 KPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFV---DPFIKYVSKSGTSDDAIA 603
KP H +Y LI + K A + M GF P + + +K +SK+ + A
Sbjct: 535 KPDHISYNTLISGYSKKGDTKHAFIVRDEMLSLGFNPTLLTYNALLKGLSKNQDGELAEE 594
Query: 604 FLKGMTSK 611
L+ M S+
Sbjct: 595 LLREMKSE 602
Score = 48.5 bits (114), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 83/393 (21%), Positives = 165/393 (41%), Gaps = 20/393 (5%)
Query: 120 QLELSGVVFTHEMVLKVLKNLESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGL 179
++E+ V+T +++ VL E +A+ F ++E + + TYN +++ + G
Sbjct: 219 RMEIKSNVYTFNIMINVLCK-EGKLKKAKGFLG-IMESFGIKPTIVTYNTLVQGYSLRGR 276
Query: 180 VQEFWGLVDVMKKKGYGVASHVRNKMTEKFEKEGLESD-LEKLKGIFATGSIDNSIE-KV 237
++ ++ MK KG+ N + EG S+ L ++KGI G + +S+ +
Sbjct: 277 IEGARMIISEMKSKGFQPDLQTYNPILSWMCNEGRASEVLREMKGI---GLVPDSVSYNI 333
Query: 238 ASRICK----VVRSDIWGDDVERQLRDLNVTFSNDLVK--FVVDKLGDEPKKALIFFRWA 291
R C + + + D++ +Q N L+ F+ +K+ + A I R
Sbjct: 334 LIRGCSNNGDLETAFAYRDEMVKQGMVPTFYTYNTLIHGLFMENKI----EAAEILIREI 389
Query: 292 EESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNM 351
E G V D +YN + + + + + + DEM + G + T ++ RN
Sbjct: 390 REKGIVL-DSVTYNIVINGYCQHGDAKKAFALHDEMMTDGIKPTQFTYTSLIYVLCRRNK 448
Query: 352 VKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAML 411
+EA +L+E + KP + L+ + +D R FS + + R N + D
Sbjct: 449 TREADELFEKVVGKGMKPDLVMMNTLMDGHCATGNMD-RAFSLLKEMDRMNIDP-DDVTY 506
Query: 412 NSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEA 471
N +++ L G+ E +++ M+ G + + S G A D M +
Sbjct: 507 NCLMRGLCGEGKFEEARELMGEMKRRGIKPDHISYNTLISGYSKKGDTKHAFIVRDEMLS 566
Query: 472 SGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKM 504
G + + +L+KG D + A + ++M
Sbjct: 567 LGFNPTLLTYNALLKGLSKNQDGELAEELLREM 599
>gi|225428276|ref|XP_002279589.1| PREDICTED: pentatricopeptide repeat-containing protein At2g17140
[Vitis vinifera]
gi|297744485|emb|CBI37747.3| unnamed protein product [Vitis vinifera]
Length = 878
Score = 58.2 bits (139), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 135/576 (23%), Positives = 229/576 (39%), Gaps = 83/576 (14%)
Query: 127 VFTHEMVLKVLKNLESSPDEAR-RFFNWVLEKES-ERLSSKTYNLMLRIVGV--HGLVQE 182
V+ + MVL ESS E + F+W+ + +S +TY L L I G+ G ++
Sbjct: 116 VYLYNMVL------ESSLREDKVDSFSWLYKDMVVAGVSPETYTLNLLIAGLCDSGRFED 169
Query: 183 FWGLVDVMKKKGYGVASHVRNKMTEKFEKEGLE-SDLEKLKGIFATGSIDNSI--EKVAS 239
+ D M KG + + + GL LE L G+ + G N + + S
Sbjct: 170 AREVFDKMGVKGCRPNEFSFGILVRGYCRAGLSMRALELLDGMGSFGVQPNKVIYNTLIS 229
Query: 240 RICKVVRSDIWGDDVERQLRDL----NVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESG 295
C+ R++ VER D VTF++ + E + + EE G
Sbjct: 230 SFCREGRNEEAERLVERMREDGLFPDVVTFNSRISALCSAGKILEASRIFRDMQIDEELG 289
Query: 296 FVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVL------GRFSER 349
+ + +++N M +E ++ +++ M+ G ME+E+ L G+ E
Sbjct: 290 LPRPNITTFNLMLEGFCKEGMLEEAKTLVESMKRNGNLMELESYNIWLLGLVRNGKLLEA 349
Query: 350 NM-VKEAVD------LYEFAMA----CKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVV-- 396
+ +KE VD +Y F CKN + + I D +S ++
Sbjct: 350 QLALKEMVDKGIEPNIYSFNTVMDGLCKNGLISDARMIMGLMISSGIGPDTVTYSTLLHG 409
Query: 397 -----RVFRENGNVLTDAM----------LNSVLKALISVGRMGECNKILKAMEEGGFIA 441
+V + N N+L + M N +L +L GR+ E K+L+ M E +
Sbjct: 410 CCSTGKVLKAN-NILHEMMRRGCSPNTYTCNILLHSLWKEGRIFEAEKLLQKMNERSYDL 468
Query: 442 SSNMKSKIAFRLSSAGKKDEANEFMDHMEASGS----DVGDKM----------------- 480
+ + + L +GK DEA E ++ M GS ++G+
Sbjct: 469 DNVTCNIVIDGLCKSGKLDEAVEIVEGMWIHGSAALGNLGNSFIGLVDSSSNGKKCLPDL 528
Query: 481 --WVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAI-DLLVNTYCSKNRAIDACKFV 537
+ +I G C AG LD+A F +MV K + H I D ++++C + A + +
Sbjct: 529 ITYSIIINGLCKAGRLDEARKKFIEMVGK--SLHPDSIIYDTFIHSFCKHGKISSAFRVL 586
Query: 538 HNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFV---DPFIKYVSK 594
+ + K TY LI L + + LL MK+ G P + + I + +
Sbjct: 587 KDMEKRGCNKSLQ-TYNSLILGLGSKNQIFEIYGLLDDMKEKGITPNICTYNNMISCLCE 645
Query: 595 SGTSDDAIAFLKGMTSKRF-PSMSVVLCLFAAFFQA 629
G DA + L M K P++S L AF +A
Sbjct: 646 GGRIKDATSLLDEMLQKGISPNISSFRLLIKAFCKA 681
Score = 41.6 bits (96), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 49/201 (24%), Positives = 81/201 (40%), Gaps = 22/201 (10%)
Query: 412 NSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEA 471
NS++ L S ++ E +L M+E G + + + L G+ +A +D M
Sbjct: 602 NSLILGLGSKNQIFEIYGLLDDMKEKGITPNICTYNNMISCLCEGGRIKDATSLLDEMLQ 661
Query: 472 SGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAI---DLLVNTYCSKN 528
G + LIK C A D + F+ + G A Y++ +LL+ S+
Sbjct: 662 KGISPNISSFRLLIKAFCKASDFGVVKEVFEIALSICGHKEALYSLMFNELLIGGEVSEA 721
Query: 529 R-----AIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGF-- 581
+ A+D C +DL + Y +LI+ L ++A +L M D G+
Sbjct: 722 KELFDAALDRC---------FDLGNFQ--YNDLIEKLCKDEMLENASDILHKMIDKGYRF 770
Query: 582 -PPFVDPFIKYVSKSGTSDDA 601
P P I + K G DA
Sbjct: 771 DPASFMPVIDGLGKRGKKHDA 791
>gi|302756343|ref|XP_002961595.1| hypothetical protein SELMODRAFT_76510 [Selaginella moellendorffii]
gi|300170254|gb|EFJ36855.1| hypothetical protein SELMODRAFT_76510 [Selaginella moellendorffii]
Length = 603
Score = 58.2 bits (139), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 78/361 (21%), Positives = 138/361 (38%), Gaps = 39/361 (10%)
Query: 282 KKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVK 341
++AL+ F E G + S+N + L ++ ID+ +V EM ++ + +
Sbjct: 132 EEALLLFNEMERLGCTP-NRRSHNTIILGLCQQSKIDQACQVFHEMEARDIPPDSWSYGI 190
Query: 342 VLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLD--MRLF----SKV 395
++ ++ + EA L+ + PS ++ + ++ LD + LF SK
Sbjct: 191 LIDGLAKAGKLNEAYKLFRRMLDSGITPSAVTYNVVIHGMCLAYTLDEALELFKSMRSKG 250
Query: 396 VRVFRENGNVLTDA---------------------------MLNSVLKALISVGRMGECN 428
R R N+L DA ++++ L S+ R+ +
Sbjct: 251 CRPSRFTFNILIDAHCKRGKMDEAFRLLKRMTDDGHVPDVVTYSTLISGLCSIARVDDAR 310
Query: 429 KILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGH 488
+L+ M + + ++ + L AG+ EA E +D M +SG + +L+ GH
Sbjct: 311 HLLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVSSGQSPDVVTYNTLVHGH 370
Query: 489 CVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKP 548
C AG ++A + MV + G + LV+ C NR +AC ++ P
Sbjct: 371 CRAGQTERARELLSDMVAR-GLAPNVVTYTALVSGLCKANRLPEACGVFAQ-MKSSGCAP 428
Query: 549 WHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPP---FVDPFIKYVSKSGTSDDAIAFL 605
TY LI L L M G P + KSG S A+ L
Sbjct: 429 NLFTYTALILGFCSAGQVDGGLKLFGEMVCAGISPDHVVYGTLAAELCKSGRSARALEIL 488
Query: 606 K 606
+
Sbjct: 489 R 489
Score = 53.1 bits (126), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 116/571 (20%), Positives = 223/571 (39%), Gaps = 32/571 (5%)
Query: 110 KFSDVNDISKQLELSGVVFTHEMVLKVLKNL--ESSPDEARRFFNWVLEKESERLSSKTY 167
K +D D+ ++L SGV + ++ L +S D+AR F + + S TY
Sbjct: 25 KLNDARDLFQKLLHSGVTPSTVAYTSLIHGLCMANSFDDARELFAD-MNRRGCPPSPVTY 83
Query: 168 NLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRNKMTEKFEKEG-LESDLEKLKGIFA 226
N+++ G+++E L+ M + G+ N + + K G +E L +
Sbjct: 84 NVIIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNTVMDGLCKSGRVEEALLLFNEMER 143
Query: 227 TGSIDN--SIEKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPK-- 282
G N S + +C+ + D V ++ ++ + ++D L K
Sbjct: 144 LGCTPNRRSHNTIILGLCQQSKID-QACQVFHEMEARDIPPDSWSYGILIDGLAKAGKLN 202
Query: 283 KALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKV 342
+A FR +SG + +YN + + +D ++ MRSKG T +
Sbjct: 203 EAYKLFRRMLDSG-ITPSAVTYNVVIHGMCLAYTLDEALELFKSMRSKGCRPSRFTFNIL 261
Query: 343 LGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIV-VSKQLDMRLFSKVVRVFRE 401
+ +R + EA L + + P V + L+ + +++ D R + + +
Sbjct: 262 IDAHCKRGKMDEAFRLLKRMTDDGHVPDVVTYSTLISGLCSIARVDDARHLLEDMVKRQC 321
Query: 402 NGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDE 461
V+T N+++ L GR+ E ++L AM G + + AG+ +
Sbjct: 322 KPTVVTQ---NTLIHGLCKAGRIKEAREVLDAMVSSGQSPDVVTYNTLVHGHCRAGQTER 378
Query: 462 ANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLV 521
A E + M A G + +L+ G C A L +A F +M + G + + L+
Sbjct: 379 ARELLSDMVARGLAPNVVTYTALVSGLCKANRLPEACGVFAQM-KSSGCAPNLFTYTALI 437
Query: 522 NTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLC----LMK 577
+CS + K V + P H Y L L AL +L ++
Sbjct: 438 LGFCSAGQVDGGLKLFGEMVCA-GISPDHVVYGTLAAELCKSGRSARALEILREGRESLR 496
Query: 578 DHGFPPFVDPF-IKYVSKSGTSDDAIAFLKGMT-SKRFPSMSVVLCLFAAFFQARRHSEA 635
+ V F + + +G + A+ F++ M + P+ L A ++ + EA
Sbjct: 497 SEAWGDEVYRFAVDGLLDAGKMEMALGFVRDMVRGGQLPAPERCASLVAGLCKSGQGGEA 556
Query: 636 QDLLSKCPRYVRNHADVLNLLYSKKSGGDSA 666
+ +L ++++L Y K+ G +A
Sbjct: 557 RAVLE----------EIMDLAYGGKARGKAA 577
Score = 49.3 bits (116), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 63/300 (21%), Positives = 116/300 (38%), Gaps = 12/300 (4%)
Query: 346 FSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLD--MRLFSKVVRVFRENG 403
++ + +A DL++ + PS T L+ + ++ D LF+ + R G
Sbjct: 20 LAKAGKLNDARDLFQKLLHSGVTPSTVAYTSLIHGLCMANSFDDARELFADMNR----RG 75
Query: 404 NVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEAN 463
+ N ++ A G + E ++K M E G + + + L +G+ +EA
Sbjct: 76 CPPSPVTYNVIIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNTVMDGLCKSGRVEEAL 135
Query: 464 EFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNT 523
+ ME G + ++I G C +D+A F +M E ++ +L++
Sbjct: 136 LLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQVFHEM-EARDIPPDSWSYGILIDG 194
Query: 524 YCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPP 583
+ +A K + + + P TY +I + + +AL L M+ G P
Sbjct: 195 LAKAGKLNEAYKLFRRML-DSGITPSAVTYNVVIHGMCLAYTLDEALELFKSMRSKGCRP 253
Query: 584 ---FVDPFIKYVSKSGTSDDAIAFLKGMT-SKRFPSMSVVLCLFAAFFQARRHSEAQDLL 639
+ I K G D+A LK MT P + L + R +A+ LL
Sbjct: 254 SRFTFNILIDAHCKRGKMDEAFRLLKRMTDDGHVPDVVTYSTLISGLCSIARVDDARHLL 313
>gi|302806733|ref|XP_002985098.1| hypothetical protein SELMODRAFT_121399 [Selaginella moellendorffii]
gi|300147308|gb|EFJ13973.1| hypothetical protein SELMODRAFT_121399 [Selaginella moellendorffii]
Length = 659
Score = 58.2 bits (139), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 105/506 (20%), Positives = 190/506 (37%), Gaps = 82/506 (16%)
Query: 176 VHGLVQ-----EFWGLVDVMKKKGYGVASHVRNKMTEKFEKEGLESDLEKLKGIFATGSI 230
+HGL Q E + L+D M +K + V N + + G+ G I
Sbjct: 99 IHGLCQCQRIDEAYQLLDEMIQKDCHPDAAVYNCL---------------IAGLCKMGKI 143
Query: 231 DNSIEKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRW 290
D A + K++ +ER +T+++ +V DE +K
Sbjct: 144 D-----AARNVLKMM--------LERSCVPDVITYTSLIVGCCQTNALDEARK---LMEK 187
Query: 291 AEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERN 350
+ESG D +YNA+ + L +++ ++ K+L+EM G E + + V+ E
Sbjct: 188 MKESGLTP-DTVAYNALLNGLCKQNQLEEVSKLLEEMVEAGREPDTFSYNTVVACLCESG 246
Query: 351 MVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLD--MRLFSKVV------------ 396
+EA + E + K P V L+ ++D RL +V
Sbjct: 247 KYEEAGKILEKMIEKKCGPDVVTYNSLMDGFCKVSKMDEAERLLEDMVGRRCAPTVITYT 306
Query: 397 ----------------RVFRE--NGNVLTDAML-NSVLKALISVGRMGECNKILKAMEEG 437
RV + + D + N +L L G++ E +++L+ M E
Sbjct: 307 TLIGGFSRADRLADAYRVMEDMFKAGISPDLVTYNCLLDGLCKAGKLEEAHELLEVMVEK 366
Query: 438 GFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKA 497
S + L GK D+A ++ M G + ++I G C AG +D+
Sbjct: 367 DCAPDVVTYSILVNGLCKLGKVDDARLLLEMMLERGCQPNLVTFNTMIDGFCKAGKVDEG 426
Query: 498 ADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELI 557
+ M E T L++ YC NR DA + + P +Y ++
Sbjct: 427 HKVLELMKEVSCTPDV-VTYSTLIDGYCKANRMQDAFAILG-------ISPDKASYSSML 478
Query: 558 KNLLVQRGFKDALSLLCLMKDHGFPPFVDPF---IKYVSKSGTSDDAIAFLKGMTSKRF- 613
+ L ++A ++ LM G PP + I + D+A+ L+ M+ +
Sbjct: 479 EGLCSTGKVEEAQEVMDLMTKQGCPPTSSHYALIIGGLCDVERGDEALKMLQVMSERGCE 538
Query: 614 PSMSVVLCLFAAFFQARRHSEAQDLL 639
P++ L + +R +A ++L
Sbjct: 539 PNLYTYSILINGLCKTKRVEDAINVL 564
Score = 52.4 bits (124), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 78/366 (21%), Positives = 148/366 (40%), Gaps = 21/366 (5%)
Query: 283 KALIFFR---WAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETC 339
+AL FR W + F +Y + L + ID +++LDEM K +
Sbjct: 77 RALSHFRGKMWCSPTAF------TYCILIHGLCQCQRIDEAYQLLDEMIQKDCHPDAAVY 130
Query: 340 VKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVF 399
++ + + A ++ + + P V T L+ + LD K++
Sbjct: 131 NCLIAGLCKMGKIDAARNVLKMMLERSCVPDVITYTSLIVGCCQTNALDEA--RKLMEKM 188
Query: 400 RENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKK 459
+E+G N++L L ++ E +K+L+ M E G + + + L +GK
Sbjct: 189 KESGLTPDTVAYNALLNGLCKQNQLEEVSKLLEEMVEAGREPDTFSYNTVVACLCESGKY 248
Query: 460 DEANEFMDHM--EASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAI 517
+EA + ++ M + G DV + SL+ G C +D+A + MV + +
Sbjct: 249 EEAGKILEKMIEKKCGPDV--VTYNSLMDGFCKVSKMDEAERLLEDMVGRR-CAPTVITY 305
Query: 518 DLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMK 577
L+ + +R DA + + + + + P TY L+ L ++A LL +M
Sbjct: 306 TTLIGGFSRADRLADAYRVMEDMFKA-GISPDLVTYNCLLDGLCKAGKLEEAHELLEVMV 364
Query: 578 DHGFPPFVDPF---IKYVSKSGTSDDAIAFLKGMTSKRF-PSMSVVLCLFAAFFQARRHS 633
+ P V + + + K G DDA L+ M + P++ + F +A +
Sbjct: 365 EKDCAPDVVTYSILVNGLCKLGKVDDARLLLEMMLERGCQPNLVTFNTMIDGFCKAGKVD 424
Query: 634 EAQDLL 639
E +L
Sbjct: 425 EGHKVL 430
Score = 49.7 bits (117), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 61/291 (20%), Positives = 119/291 (40%), Gaps = 12/291 (4%)
Query: 303 SYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFA 362
+Y + R D + ++V+++M G ++ T +L + ++EA +L E
Sbjct: 304 TYTTLIGGFSRADRLADAYRVMEDMFKAGISPDLVTYNCLLDGLCKAGKLEEAHELLEVM 363
Query: 363 MACKNKPSVNCCTFLLRKIV-VSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISV 421
+ P V + L+ + + K D RL + + E G N+++
Sbjct: 364 VEKDCAPDVVTYSILVNGLCKLGKVDDARLL---LEMMLERGCQPNLVTFNTMIDGFCKA 420
Query: 422 GRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMW 481
G++ E +K+L+ M+E S + + G +AN D G +
Sbjct: 421 GKVDEGHKVLELMKE-----VSCTPDVVTYSTLIDGYC-KANRMQDAFAILGISPDKASY 474
Query: 482 VSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCV 541
S+++G C G +++A + M K+G L++ C R +A K + +
Sbjct: 475 SSMLEGLCSTGKVEEAQEVMDLMT-KQGCPPTSSHYALIIGGLCDVERGDEALKMLQ-VM 532
Query: 542 REYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPFIKYV 592
E +P TY LI L + +DA+++L +M + G P V + +
Sbjct: 533 SERGCEPNLYTYSILINGLCKTKRVEDAINVLDVMLEKGCVPDVATYTSLI 583
Score = 45.1 bits (105), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 41/175 (23%), Positives = 75/175 (42%), Gaps = 2/175 (1%)
Query: 409 AMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDH 468
A +S+L+ L S G++ E +++ M + G +S+ + I L + DEA + +
Sbjct: 472 ASYSSMLEGLCSTGKVEEAQEVMDLMTKQGCPPTSSHYALIIGGLCDVERGDEALKMLQV 531
Query: 469 MEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKN 528
M G + + LI G C ++ A + M+EK G L++ +C N
Sbjct: 532 MSERGCEPNLYTYSILINGLCKTKRVEDAINVLDVMLEK-GCVPDVATYTSLIDGFCKIN 590
Query: 529 RAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPP 583
+ +DA +R+ +P Y LI + A+ ++ LM + G P
Sbjct: 591 K-MDAAYQCFKTMRDSGCEPDKLAYNILISGFCQSGNVEKAIEVMQLMLEKGCNP 644
>gi|15240891|ref|NP_195731.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75174092|sp|Q9LFC5.1|PP360_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g01110
gi|6759434|emb|CAB69839.1| putative protein [Arabidopsis thaliana]
gi|28973740|gb|AAO64186.1| unknown protein [Arabidopsis thaliana]
gi|110736884|dbj|BAF00399.1| hypothetical protein [Arabidopsis thaliana]
gi|332002917|gb|AED90300.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 729
Score = 58.2 bits (139), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 101/431 (23%), Positives = 171/431 (39%), Gaps = 25/431 (5%)
Query: 166 TYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRNKMTEKFEKEGLESDLEKLKGIF 225
TYN ++ GL++E + L++ M KG+ + N + K G E+ K +F
Sbjct: 272 TYNTLISAYSSKGLMEEAFELMNAMPGKGFSPGVYTYNTVINGLCKHG---KYERAKEVF 328
Query: 226 A----TG-SIDNSIEK-VASRICK---VVRSD-IWGDDVERQLRDLNVTFSNDLVKFVVD 275
A +G S D++ + + CK VV ++ ++ D R + V FS+ + F
Sbjct: 329 AEMLRSGLSPDSTTYRSLLMEACKKGDVVETEKVFSDMRSRDVVPDLVCFSSMMSLFTRS 388
Query: 276 KLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEME 335
D KAL++F +E+G + D Y + R+ I + +EM +G M+
Sbjct: 389 GNLD---KALMYFNSVKEAGLIP-DNVIYTILIQGYCRKGMISVAMNLRNEMLQQGCAMD 444
Query: 336 METCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRK--IVVSKQLDMRLFS 393
+ T +L +R M+ EA L+ P T L+ + + Q M LF
Sbjct: 445 VVTYNTILHGLCKRKMLGEADKLFNEMTERALFPDSYTLTILIDGHCKLGNLQNAMELFQ 504
Query: 394 KVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRL 453
K+ +E L N++L VG + +I M + + S + L
Sbjct: 505 KM----KEKRIRLDVVTYNTLLDGFGKVGDIDTAKEIWADMVSKEILPTPISYSILVNAL 560
Query: 454 SSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHA 513
S G EA D M + + S+IKG+C +G+ +KM+ EG
Sbjct: 561 CSKGHLAEAFRVWDEMISKNIKPTVMICNSMIKGYCRSGNASDGESFLEKMIS-EGFVPD 619
Query: 514 GYAIDLLVNTYCSKNRAIDACKFVHNCVREY-DLKPWHTTYEELIKNLLVQRGFKDALSL 572
+ + L+ + + A V E L P TY ++ Q K+A +
Sbjct: 620 CISYNTLIYGFVREENMSKAFGLVKKMEEEQGGLVPDVFTYNSILHGFCRQNQMKEAEVV 679
Query: 573 LCLMKDHGFPP 583
L M + G P
Sbjct: 680 LRKMIERGVNP 690
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 100/476 (21%), Positives = 171/476 (35%), Gaps = 56/476 (11%)
Query: 178 GLVQEFWGLVDVMKKKGYGVASHVRNKMTEKFEKEGLESDLEKLKGIFATGSIDNSIEKV 237
G V+ WG+ + + G G+ + N M K+G +EKV
Sbjct: 214 GWVELAWGVYQEISRSGVGINVYTLNIMVNALCKDG-------------------KMEKV 254
Query: 238 ASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFV 297
+ + +V ++ D V T++ + + L +E A GF
Sbjct: 255 GTFLSQVQEKGVYPDIV---------TYNTLISAYSSKGLMEE---AFELMNAMPGKGF- 301
Query: 298 KHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVD 357
+YN + + L + +R +V EM G + T +L ++ V E
Sbjct: 302 SPGVYTYNTVINGLCKHGKYERAKEVFAEMLRSGLSPDSTTYRSLLMEACKKGDVVETEK 361
Query: 358 LYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRL--FSKVVRVFRENGNVLTDAMLNSVL 415
++ + P + C + ++ S LD L F+ V +E G + + + ++
Sbjct: 362 VFSDMRSRDVVPDLVCFSSMMSLFTRSGNLDKALMYFNSV----KEAGLIPDNVIYTILI 417
Query: 416 KALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSD 475
+ G + + M + G + I L EA++ + M
Sbjct: 418 QGYCRKGMISVAMNLRNEMLQQGCAMDVVTYNTILHGLCKRKMLGEADKLFNEMTERALF 477
Query: 476 VGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCS------KNR 529
LI GHC G+L A + FQKM EK I L V TY + K
Sbjct: 478 PDSYTLTILIDGHCKLGNLQNAMELFQKMKEKR--------IRLDVVTYNTLLDGFGKVG 529
Query: 530 AIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFV---D 586
ID K + + ++ P +Y L+ L + +A + M P V +
Sbjct: 530 DIDTAKEIWADMVSKEILPTPISYSILVNALCSKGHLAEAFRVWDEMISKNIKPTVMICN 589
Query: 587 PFIKYVSKSGTSDDAIAFLKGMTSKRF-PSMSVVLCLFAAFFQARRHSEAQDLLSK 641
IK +SG + D +FL+ M S+ F P L F + S+A L+ K
Sbjct: 590 SMIKGYCRSGNASDGESFLEKMISEGFVPDCISYNTLIYGFVREENMSKAFGLVKK 645
>gi|297842515|ref|XP_002889139.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297334980|gb|EFH65398.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 482
Score = 58.2 bits (139), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 104/477 (21%), Positives = 186/477 (38%), Gaps = 80/477 (16%)
Query: 117 ISKQLELSGVVFTHEMVLKVLKNLESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVGV 176
I L+ SG+ + E+V VL ++ A RFF W ++ S + Y++M+
Sbjct: 52 IDSALDQSGLRVSPEVVEDVLYRFRNAGLLAYRFFQWSEKQRHYEHSVRAYHMMIESTAK 111
Query: 177 HGLVQEFWGLVD-VMKKKGYGVAS-------HVRNKMTEK-------FEKEGLESDLEKL 221
+ W L++ +MKKK V + + R + ++ EK L +L
Sbjct: 112 IRQYKLMWDLINAMMKKKMLNVETFCIVMRKYARAQKVDEAIYAFNVMEKYDLPPNLVAF 171
Query: 222 KGIFATGSIDNSIEKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEP 281
G+ + ++ K ++ +RD T + +++ G EP
Sbjct: 172 NGLLSALCKSKNVRK--------------AQEIFENMRD-RFTPDSKTYSILLEGWGKEP 216
Query: 282 K--KALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETC 339
KA FR ++G + D +Y+ M +L + +D + L +RS M+ C
Sbjct: 217 NLPKAREVFREMVDAGSLP-DIVTYSIMVDILCKAGRVD---EALGIVRS----MDPSIC 268
Query: 340 VKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVF 399
KP+ TF+ +V + + RL + V F
Sbjct: 269 ----------------------------KPT----TFIYSVLVHTYGTETRL-EEAVDTF 295
Query: 400 RE---NGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSA 456
E +G A+ NS++ A RM ++LK M+ G +S + I L
Sbjct: 296 LEMERSGMKADVAVFNSLIGAFCKTNRMKNVYRVLKEMKSKGVTPNSKSCNIILRHLIDR 355
Query: 457 GKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYA 516
G+KDEA + M D + +IK C +++ AD K + K+G + +
Sbjct: 356 GEKDEAFDVFRKMIKVCEPDADT-YTMMIKMFCEKKEME-TADKVWKYMRKKGVFPSMHT 413
Query: 517 IDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLL 573
+L+N C + AC + + E ++P T+ L + LL++ +D L L
Sbjct: 414 FSVLINGLCEEPNTQKACVLLEEMI-EMGIRPSGATFGRL-RQLLLKEDREDVLKFL 468
>gi|302769784|ref|XP_002968311.1| hypothetical protein SELMODRAFT_89033 [Selaginella moellendorffii]
gi|300163955|gb|EFJ30565.1| hypothetical protein SELMODRAFT_89033 [Selaginella moellendorffii]
Length = 600
Score = 58.2 bits (139), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 76/319 (23%), Positives = 119/319 (37%), Gaps = 43/319 (13%)
Query: 298 KHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVD 357
K D SYNA+ L RE + K+ + +GYE E+ T ++ + + V EA +
Sbjct: 255 KPDIVSYNALIHGLAREQGVSEALKLFGSVLRQGYEPEVPTYNILIDGLLKEDRVNEAFE 314
Query: 358 LYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKA 417
LFS +V+ E + ++ + KA
Sbjct: 315 ---------------------------------LFSGLVKHGLEPDAITYTVFIDGLCKA 341
Query: 418 LISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVG 477
GR+ + +LK M+E G + + + L + DEA + MEA G
Sbjct: 342 ----GRVEDALLMLKDMDEKGCVPDVVSHNAVINGLCKEKRVDEAEVLLSGMEAKGCSPN 397
Query: 478 DKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRA--IDACK 535
+ +LI G C AG KA F++M+ K G ++LV+ C + I
Sbjct: 398 AISFNTLICGQCRAGKWKKAMTTFKEML-KRGVKPTVVTYNILVDGLCKARQEGRIKEAI 456
Query: 536 FVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFV---DPFIKYV 592
+ + + E P TY LI L DA LL M+ G P V + I +
Sbjct: 457 TLFDAMIEKGRVPDVVTYSALIDGLGKAGKLDDARRLLGAMEAKGCIPNVYTYNSLISGL 516
Query: 593 SKSGTSDDAIAFLKGMTSK 611
D+A+ M K
Sbjct: 517 CGLDKVDEALELFVAMVEK 535
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 84/348 (24%), Positives = 136/348 (39%), Gaps = 16/348 (4%)
Query: 300 DESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLY 359
D S++N S L R I V D MR G+ T +L + +A LY
Sbjct: 49 DISTFNIYISGLCRASRIGDAQTVFDGMRKHGFWPNRITYNALLSGLCNGGRMSDAQALY 108
Query: 360 EFAMACKNKPSVNCCTFLLRKIVVSKQLD--MRLFSKVVRVFRENGNVLTDAMLNSVLKA 417
E + P V LL +LD +++F V+ V +A++N KA
Sbjct: 109 ERMIKAGYSPDVVTYNTLLHGFCKVGKLDEALKIFDGAVKRGFVPDVVTYNALINGFCKA 168
Query: 418 LISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVG 477
++ E +IL+ M + + + L G+ DEA + S + +
Sbjct: 169 ----DKLDEAQRILQRMVSESLVPDVVTYNSLVNGLCKNGRVDEARMLIVDKGFSPNVI- 223
Query: 478 DKMWVSLIKGHCVA-GDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKF 536
+ +LI G C L+ A +KMV G + + L++ + +A K
Sbjct: 224 --TYSTLISGLCRELRRLESARQLLEKMV-LNGCKPDIVSYNALIHGLAREQGVSEALKL 280
Query: 537 VHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPP---FVDPFIKYVS 593
+ +R+ +P TY LI LL + +A L + HG P FI +
Sbjct: 281 FGSVLRQ-GYEPEVPTYNILIDGLLKEDRVNEAFELFSGLVKHGLEPDAITYTVFIDGLC 339
Query: 594 KSGTSDDAIAFLKGMTSKR-FPSMSVVLCLFAAFFQARRHSEAQDLLS 640
K+G +DA+ LK M K P + + + +R EA+ LLS
Sbjct: 340 KAGRVEDALLMLKDMDEKGCVPDVVSHNAVINGLCKEKRVDEAEVLLS 387
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 73/290 (25%), Positives = 110/290 (37%), Gaps = 17/290 (5%)
Query: 294 SGFVKH----DESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSER 349
SG VKH D +Y L + ++ +L +M KG ++ + V+ +
Sbjct: 317 SGLVKHGLEPDAITYTVFIDGLCKAGRVEDALLMLKDMDEKGCVPDVVSHNAVINGLCKE 376
Query: 350 NMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRE---NGNVL 406
V EA L A P N +F ++ Q + K + F+E G
Sbjct: 377 KRVDEAEVLLSGMEAKGCSP--NAISF---NTLICGQCRAGKWKKAMTTFKEMLKRGVKP 431
Query: 407 TDAMLNSVLKALISV---GRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEAN 463
T N ++ L GR+ E + AM E G + S + L AGK D+A
Sbjct: 432 TVVTYNILVDGLCKARQEGRIKEAITLFDAMIEKGRVPDVVTYSALIDGLGKAGKLDDAR 491
Query: 464 EFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNT 523
+ MEA G + SLI G C +D+A + F MVEK G +++
Sbjct: 492 RLLGAMEAKGCIPNVYTYNSLISGLCGLDKVDEALELFVAMVEK-GCVPDTITYGTIISA 550
Query: 524 YCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLL 573
C K +D + + E + P Y LI L +AL LL
Sbjct: 551 LC-KQEMVDKALALFDGSLEAGVVPTSGMYFSLIDGLCAVARVDEALKLL 599
>gi|410109901|gb|AFV61030.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
microcephala]
Length = 431
Score = 58.2 bits (139), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 67/295 (22%), Positives = 113/295 (38%), Gaps = 11/295 (3%)
Query: 266 SNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLD 325
+ L++ VV + G A +F E G + D ++ + + + +
Sbjct: 38 AKSLIQVVVSRKGKGSASA-VFAAILETRGTQRSDIYVFSGLITAYLESGFLRDAIECYR 96
Query: 326 EMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSK 385
R + + ++TC KVL + K YE + C S+ L+ + K
Sbjct: 97 LTREHKFWVPIDTCRKVLEHLMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFC--K 154
Query: 386 QLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNM 445
D+RL V + G + N+++ I +G + E ++ AM G
Sbjct: 155 DGDIRLAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYT 214
Query: 446 KSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMV 505
S + L K D+ANE D M G + +LI GHC G +D A + +++M+
Sbjct: 215 YSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQML 274
Query: 506 EKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYD---LKPWHTTYEELI 557
+ S + L+ C K K H+ + E LKP TY LI
Sbjct: 275 S-QSLSPDLITYNTLIYGLCKKGDL----KQAHHLIDEMSVKGLKPDKITYTTLI 324
Score = 45.8 bits (107), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 91/446 (20%), Positives = 164/446 (36%), Gaps = 36/446 (8%)
Query: 150 FFNWVLEKESE--RLSSKTYNLMLRIVGVHGLVQEFWGLVDVM-KKKGYGVASHVRNKMT 206
FF W+ + R + +Y M+ + H ++ E L+ V+ +KG G AS V +
Sbjct: 3 FFTWLSSPANSNFRHTLHSYCTMIHFLCTHQMLSEAKSLIQVVVSRKGKGSASAVFAAIL 62
Query: 207 EKFEKEGLESDLEKLKGIFATGSIDNSIEKVASRICKVVRSDIWGDDVE--RQLRDLNVT 264
E G+ + I + I + S D +E R R+
Sbjct: 63 E------------------TRGTQRSDIYVFSGLITAYLESGFLRDAIECYRLTREHKFW 104
Query: 265 FSNDLVKFVVDKLGDEPKKALI--FFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWK 322
D + V++ L L+ F+ E G+ +N + ++ I
Sbjct: 105 VPIDTCRKVLEHLMKLKYFKLVWGFYEEILECGY-PASLYFFNILMHRFCKDGDIRLAQS 163
Query: 323 VLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIV 382
V D + G + + ++ + + E L +A +P V + L+ +
Sbjct: 164 VFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLC 223
Query: 383 VSKQLD--MRLFSK-VVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGF 439
++D LF + +V+ NG T +++ GR+ +I K M
Sbjct: 224 KESKMDDANELFDEMLVKGLVPNGVTFT-----TLIDGHCKNGRVDLAMEIYKQMLSQSL 278
Query: 440 IASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAAD 499
+ + + L G +A+ +D M G + +LI G C GDLD A +
Sbjct: 279 SPDLITYNTLIYGLCKKGDLKQAHHLIDEMSVKGLKPDKITYTTLIDGCCKEGDLDSAFE 338
Query: 500 CFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKN 559
++M++ E A L++ C + R++DA K + + LKP TY +I
Sbjct: 339 HRKRMIQ-ENIRLDEVAYTALISGLCQEGRSVDAEKMLREML-SVGLKPDARTYTMIINE 396
Query: 560 LLVQRGFKDALSLLCLMKDHGFPPFV 585
+ LL M+ G P V
Sbjct: 397 FCKKGDVWKGSKLLKEMQRDGHVPSV 422
>gi|410109879|gb|AFV61019.1| pentatricopeptide repeat-containing protein 11, partial [Aloysia
macrostachya]
Length = 414
Score = 58.2 bits (139), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 67/268 (25%), Positives = 103/268 (38%), Gaps = 30/268 (11%)
Query: 293 ESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMV 352
ESGF++ Y L RE +FW D TC KVL +
Sbjct: 67 ESGFLRDAIECYR-----LTREH---KFWVPFD------------TCRKVLEHMMKLKYF 106
Query: 353 KEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLN 412
K YE + C S+ L+ + K+ D+R+ V + G + N
Sbjct: 107 KLVWGFYEEILECGYPASLYFFNILMHRFC--KEGDIRVAQSVFNAITKWGLRPSVVSFN 164
Query: 413 SVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEAS 472
+++ I +G + E ++ AM G S + L K D+ANE D M
Sbjct: 165 TLMNGYIRLGDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDK 224
Query: 473 GSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAID 532
G + +LI GHC +G +D A + +++M+ + S + L+ C K
Sbjct: 225 GLVPNGVTFTTLIDGHCKSGRVDLAMEIYKQMLS-QSLSPDLITYNTLIYGLCKKGDL-- 281
Query: 533 ACKFVHNCVREYD---LKPWHTTYEELI 557
K H+ + E LKP TY LI
Sbjct: 282 --KQAHDLIDEMSMKGLKPDKITYTTLI 307
Score = 42.4 bits (98), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 48/220 (21%), Positives = 87/220 (39%), Gaps = 8/220 (3%)
Query: 368 KPSVNCCTFLLRKIVVSKQLD--MRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMG 425
+P V + L+ + ++D LF +++ + G V +++ GR+
Sbjct: 192 QPDVYTYSVLINGLCKESKMDDANELFDEML----DKGLVPNGVTFTTLIDGHCKSGRVD 247
Query: 426 ECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLI 485
+I K M + + + L G +A++ +D M G + +LI
Sbjct: 248 LAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKITYTTLI 307
Query: 486 KGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYD 545
G C GDL+ A + ++M++ E A L++ C + R +DA K + +
Sbjct: 308 DGCCKEGDLETAFEHRKRMIQ-ENIRLDDVAYTALISGLCQEGRYLDAEKVLREMLSA-G 365
Query: 546 LKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFV 585
LKP TY +I + LL M+ G P V
Sbjct: 366 LKPDTGTYTMIINEFCKKGDVWTGSKLLKEMQRDGHVPSV 405
>gi|147841262|emb|CAN75614.1| hypothetical protein VITISV_022293 [Vitis vinifera]
Length = 590
Score = 58.2 bits (139), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 56/240 (23%), Positives = 100/240 (41%), Gaps = 10/240 (4%)
Query: 346 FSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDM--RLFSKVVRVFRENG 403
++ M ++A+ ++E KP ++ CT LL + ++ +M +++ K+VRV G
Sbjct: 137 YANSRMTQDAIQVFEHMRVHGFKPHLHACTVLLNSLAKARLTNMVWKVYKKMVRV----G 192
Query: 404 NVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEAN 463
V + N ++ A G + + ++L ME + + G EA
Sbjct: 193 VVPNIHIFNVLIHACCKSGDVEKAEQLLNEMESRFIFPDLFTYNTLISLYCKKGMHYEAL 252
Query: 464 EFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNT 523
D ME G + SLI G C G + +A F++ + +H Y L++
Sbjct: 253 GIQDRMERGGVSPDIVTYNSLIYGFCREGRMREALRLFRE-INGATPNHVTYTT--LIDG 309
Query: 524 YCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPP 583
YC N +A + + + L P TY +++ L + KDA LL M + P
Sbjct: 310 YCRVNDLEEALR-LREVMEVEGLHPGVVTYNSILRKLCEEGKIKDANRLLNEMSERKVEP 368
Score = 48.9 bits (115), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 70/345 (20%), Positives = 140/345 (40%), Gaps = 16/345 (4%)
Query: 304 YNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAM 363
+N + + +++ ++L+EM S+ ++ T ++ + ++ M EA+ + +
Sbjct: 200 FNVLIHACCKSGDVEKAEQLLNEMESRFIFPDLFTYNTLISLYCKKGMHYEALGIQDRME 259
Query: 364 ACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRE-NGNVLTDAMLNSVLKALISVG 422
P + L+ ++ MR + +R+FRE NG +++ V
Sbjct: 260 RGGVSPDIVTYNSLIYGF--CREGRMR---EALRLFREINGATPNHVTYTTLIDGYCRVN 314
Query: 423 RMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWV 482
+ E ++ + ME G + I +L GK +AN ++ M + +
Sbjct: 315 DLEEALRLREVMEVEGLHPGVVTYNSILRKLCEEGKIKDANRLLNEMSERKVEPDNVTCN 374
Query: 483 SLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVR 542
+LI +C GD+ A +KM+E G + L++ +C + A +F+ +
Sbjct: 375 TLINAYCKIGDMGSAMKVKKKMLEA-GLKPDQFTFKALIHGFCKLHEVDSAKEFLFEML- 432
Query: 543 EYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVD-----PFIKYVSKSGT 597
+ P ++TY L+ + Q + + L + G FVD I+ + K
Sbjct: 433 DAGFSPSYSTYSWLVDSYYDQDNKEAVIRLPDELSRKGL--FVDISVYRALIRRLCKIDK 490
Query: 598 SDDAIAFLKGMTSKRFPSMSVVLCLFA-AFFQARRHSEAQDLLSK 641
+ A M K SVV A A+F+A + A D+L +
Sbjct: 491 IESAERIFTLMQGKGMKGDSVVYTSLAYAYFKAGKAIAASDMLDE 535
>gi|15242446|ref|NP_198787.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75170916|sp|Q9FIX3.1|PP407_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At5g39710; AltName: Full=Protein EMBRYO DEFECTIVE 2745
gi|10177971|dbj|BAB11377.1| unnamed protein product [Arabidopsis thaliana]
gi|332007083|gb|AED94466.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 747
Score = 58.2 bits (139), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 78/345 (22%), Positives = 128/345 (37%), Gaps = 47/345 (13%)
Query: 303 SYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFA 362
SYN + + L RE + VL EM +GY ++ T ++ + + +A+ ++
Sbjct: 277 SYNVVINGLCREGRMKEVSFVLTEMNRRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEM 336
Query: 363 MACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVG 422
+ PSV + ++++S+ KA G
Sbjct: 337 LRHGLTPSV---------------------------------ITYTSLIHSMCKA----G 359
Query: 423 RMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWV 482
M + L M G + + + S G +EA + M +G +
Sbjct: 360 NMNRAMEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYN 419
Query: 483 SLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVR 542
+LI GHCV G ++ A + M EK G S + +++ +C ++ +D V +
Sbjct: 420 ALINGHCVTGKMEDAIAVLEDMKEK-GLSPDVVSYSTVLSGFC-RSYDVDEALRVKREMV 477
Query: 543 EYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPF-----IKYVSKSGT 597
E +KP TY LI+ QR K+A L M G PP D F I G
Sbjct: 478 EKGIKPDTITYSSLIQGFCEQRRTKEACDLYEEMLRVGLPP--DEFTYTALINAYCMEGD 535
Query: 598 SDDAIAFLKGMTSKR-FPSMSVVLCLFAAFFQARRHSEAQDLLSK 641
+ A+ M K P + L + R EA+ LL K
Sbjct: 536 LEKALQLHNEMVEKGVLPDVVTYSVLINGLNKQSRTREAKRLLLK 580
Score = 48.9 bits (115), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 77/324 (23%), Positives = 137/324 (42%), Gaps = 63/324 (19%)
Query: 250 WGDDVERQLRDLNVT-FSNDLVKF--------VVDKLGDEPKKALIFFRWAEESGFVKHD 300
+ ++ R LR++N FS +V + V K+ D A+ +E G + D
Sbjct: 395 YMNEAYRVLREMNDNGFSPSVVTYNALINGHCVTGKMED----AIAVLEDMKEKG-LSPD 449
Query: 301 ESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYE 360
SY+ + S R +D +V EM KG + + T ++ F E+ KEA DLYE
Sbjct: 450 VVSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPDTITYSSLIQGFCEQRRTKEACDLYE 509
Query: 361 FAMACKNKPSVNCCTFLLRKIVVSKQLD--MRLFSKVVRVFRENGNVLTDAMLNSVL-KA 417
+ P T L+ + L+ ++L +++V E G VL D + SVL
Sbjct: 510 EMLRVGLPPDEFTYTALINAYCMEGDLEKALQLHNEMV----EKG-VLPDVVTYSVLING 564
Query: 418 LISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVG 477
L R E ++L + ++ S + + + + S++
Sbjct: 565 LNKQSRTREAKRLLLKL-----FYEESVPSDVTYHT---------------LIENCSNIE 604
Query: 478 DKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHA--GYAIDLLVNTYCSKNRAIDACK 535
K VSLIKG C+ G + +A F+ M+ G +H G A +++++ +C
Sbjct: 605 FKSVVSLIKGFCMKGMMTEADQVFESML---GKNHKPDGTAYNIMIHGHC---------- 651
Query: 536 FVHNCVREYDLKPWHTTYEELIKN 559
R D++ +T Y+E++K+
Sbjct: 652 ------RAGDIRKAYTLYKEMVKS 669
Score = 41.2 bits (95), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 50/194 (25%), Positives = 72/194 (37%), Gaps = 39/194 (20%)
Query: 484 LIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFV------ 537
LI+G C AG++D A F KM E +G + L++ YC + D K +
Sbjct: 211 LIRGFCFAGNIDVALTLFDKM-ETKGCLPNVVTYNTLIDGYCKLRKIDDGFKLLRSMALK 269
Query: 538 --------HNCV-----REYDLKPW---------------HTTYEELIKNLLVQRGFKDA 569
+N V RE +K TY LIK + F A
Sbjct: 270 GLEPNLISYNVVINGLCREGRMKEVSFVLTEMNRRGYSLDEVTYNTLIKGYCKEGNFHQA 329
Query: 570 LSLLCLMKDHGFPPFVDPF---IKYVSKSGTSDDAIAFLKGMTSKRF-PSMSVVLCLFAA 625
L + M HG P V + I + K+G + A+ FL M + P+ L
Sbjct: 330 LVMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLCPNERTYTTLVDG 389
Query: 626 FFQARRHSEAQDLL 639
F Q +EA +L
Sbjct: 390 FSQKGYMNEAYRVL 403
>gi|297604045|ref|NP_001054898.2| Os05g0207200 [Oryza sativa Japonica Group]
gi|218196267|gb|EEC78694.1| hypothetical protein OsI_18845 [Oryza sativa Indica Group]
gi|222630569|gb|EEE62701.1| hypothetical protein OsJ_17504 [Oryza sativa Japonica Group]
gi|255676129|dbj|BAF16812.2| Os05g0207200 [Oryza sativa Japonica Group]
Length = 467
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 72/300 (24%), Positives = 118/300 (39%), Gaps = 41/300 (13%)
Query: 297 VKHDESSYNA-MASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEA 355
+ D +YN M + + +D + DEM +G + T ++ F E ++EA
Sbjct: 151 IHPDACTYNILMRAAVADSGSVDNACLLFDEMLQRGIAPTVVTFGTLVTAFCEAGRLEEA 210
Query: 356 VDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVL 415
+ E V+S Q ++R N +V S++
Sbjct: 211 FKVKE---------------------VMSLQYNIR----------PNAHVYA-----SLM 234
Query: 416 KALISVGRMGECNKILKAM-EEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGS 474
KAL G++ + +++ + M + S + +A L GKK E ++ M+ G
Sbjct: 235 KALCEKGKVDDAHRLKEEMVSNSEPLVDSGAYATLARALFRLGKKGEVVSLLEEMKEKGI 294
Query: 475 DVGDKMWVSLIKGHCV-AGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDA 533
VG ++ S+I G C GDLD A M +K G + + LV C R DA
Sbjct: 295 KVGREVHNSMIAGFCEDEGDLDAAFAALDDM-QKGGCKPDSVSYNTLVGGLCKMGRWRDA 353
Query: 534 CKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPFIKYVS 593
+ V + R +P TY L + GF +A + M GF P D K+V+
Sbjct: 354 SELVEDMPRR-GCRPDVVTYRRLFDGICDAGGFSEARRVFNEMVFKGFAPSKDGVRKFVA 412
>gi|222630089|gb|EEE62221.1| hypothetical protein OsJ_17008 [Oryza sativa Japonica Group]
Length = 584
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 66/313 (21%), Positives = 121/313 (38%), Gaps = 41/313 (13%)
Query: 289 RWAEESGFVKHD---ESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGR 345
R E GF+ ++SYNA+ L E + + V++EM +G + + T ++
Sbjct: 154 RVEEARGFLAETVPVQASYNAVVHALCGEFRMWEVFSVVNEMVQRGLQPNVVTYTTIVDA 213
Query: 346 FSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNV 405
F CK + C L R + + ++ F+ +V+ F E+G V
Sbjct: 214 F------------------CKARELRMACAILARMVSMGCTPNVLTFTALVKGFFEDGKV 255
Query: 406 LTDAM-----------------LNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSK 448
DA+ N +++ L +G + +M+ + ++ S
Sbjct: 256 -HDALSMWHWMVDEGWAPSTISYNVLIRGLCCIGDLKGALDFFNSMKRNALLPNATTYST 314
Query: 449 IAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKE 508
+ S+AG D A + M++SG ++ ++I C D+A KM+
Sbjct: 315 LVDGFSNAGDLDGAMLIWNEMKSSGCKPNVVVYTNMIDVLCKKMMFDQAESLIDKMLMDN 374
Query: 509 GTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKD 568
+ + L+ C R A H +R P TY EL+ L + KD
Sbjct: 375 CPPNT-VTFNTLIGRLCDCGRVGRALNVFHG-MRRNGCHPNDRTYNELLHGLFREGNHKD 432
Query: 569 ALSLLCLMKDHGF 581
A +++ M ++GF
Sbjct: 433 AFAMVIEMLNNGF 445
>gi|449438681|ref|XP_004137116.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g39710-like [Cucumis sativus]
Length = 749
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 77/348 (22%), Positives = 128/348 (36%), Gaps = 53/348 (15%)
Query: 303 SYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFA 362
SYN + + L RE + ++L+EM + Y + T ++ + +A+ L+ A
Sbjct: 275 SYNVVINGLCREGQMKETSEILEEMSKRRYVPDRVTFNTLINGYCNVGNFHQALVLH--A 332
Query: 363 MACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVG 422
KN S N T+ ++NS+ KA G
Sbjct: 333 EMVKNGLSPNVVTY-------------------------------TTLINSMCKA----G 357
Query: 423 RMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWV 482
+ + L M + G + + + S G +A + M M +G +
Sbjct: 358 NLNRAMEFLDQMRDRGLHPNGRTYTTLIDGFSQQGFLKQAYQIMKEMVENGFTPTIITYN 417
Query: 483 SLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDL-----LVNTYCSKNRAIDACKFV 537
+LI GHC+ G ++ A+ Q+M+E+ G+ D+ +++ +C A +
Sbjct: 418 ALINGHCILGRMEDASGLLQEMIER------GFIPDVVSYSTIISGFCRNQELEKAFQLK 471
Query: 538 HNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPP---FVDPFIKYVSK 594
V + + P TY LI+ L QR + L M G PP I
Sbjct: 472 VEMVAK-GISPDVATYSSLIQGLCKQRRLGEVCDLFQEMLSLGLPPDEVTYTSLINAYCI 530
Query: 595 SGTSDDAIAFLKGMTSKRF-PSMSVVLCLFAAFFQARRHSEAQDLLSK 641
G D A+ M K F P + L F + R EA+ LL K
Sbjct: 531 EGDLDKALRLHDEMIQKGFSPDIVTYNVLINGFNKQSRTKEAKRLLLK 578
Score = 43.5 bits (101), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 59/286 (20%), Positives = 124/286 (43%), Gaps = 28/286 (9%)
Query: 293 ESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMV 352
E GF+ D SY+ + S R +++ +++ EM +KG ++ T ++ ++ +
Sbjct: 441 ERGFIP-DVVSYSTIISGFCRNQELEKAFQLKVEMVAKGISPDVATYSSLIQGLCKQRRL 499
Query: 353 KEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLD--MRLFSKVVRVFRENGNVLTDAM 410
E DL++ ++ P T L+ + LD +RL ++++ V + +
Sbjct: 500 GEVCDLFQEMLSLGLPPDEVTYTSLINAYCIEGDLDKALRLHDEMIQKGFSPDIVTYNVL 559
Query: 411 LNSVLKALISVGRMGECNKIL-KAMEEGGFIAS----------SNMKSKIAFRLSSA--- 456
+N K R E ++L K + E +N++ K A L
Sbjct: 560 INGFNKQ----SRTKEAKRLLLKLLYEESVPNEITYNTLIDNCNNLEFKSALALMKGFCM 615
Query: 457 -GKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGY 515
G +EA+ ++ M G + ++++ +I GH G+++KA + +++M+ H+G+
Sbjct: 616 KGLMNEADRVLESMLQKGYKLNEEVYNVIIHGHSKVGNIEKAYNLYKEML------HSGF 669
Query: 516 AIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLL 561
A + +K+ + + N + +Y LK T L K L+
Sbjct: 670 APHSVTIMALAKSLYHEGKEVELNQLLDYTLKSCRITEAALAKVLI 715
>gi|297734265|emb|CBI15512.3| unnamed protein product [Vitis vinifera]
Length = 660
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 65/260 (25%), Positives = 108/260 (41%), Gaps = 16/260 (6%)
Query: 389 MRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSK 448
+R F +++RV G V T N +L L+ + C ++ + ME G + +
Sbjct: 208 LRSFRRMLRV----GFVPTVITSNYLLNGLLKLNYTDRCWEVYEEMERFGIAPNLYTFNI 263
Query: 449 IAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKE 508
+ L G + N+F++ ME G D + +LI +C G LD A + K++ +
Sbjct: 264 LTHVLCKDGDTGKVNKFLEKMEEEGFDPDIVTYNTLINSYCRKGRLDDAFYLY-KIMYRR 322
Query: 509 GTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKD 568
G + L+N C + R +A + H V L P TY LI + ++
Sbjct: 323 GVVPDLVSYTALMNGLCKEGRVREAHQLFHRMVHR-GLSPDIVTYNTLIHGYCKEGKMQE 381
Query: 569 ALSLLCLMKDHGFPPFVDPFIKYVSKSGTSDDAIAFLKGMT----SKRFP---SMSVVLC 621
+ SLL M +G P D F +V G + FL + +RF S +
Sbjct: 382 SRSLLHDMIWNGISP--DSFTCWVLVEGYGKEG-KFLSALNLVVELQRFGVSISQDIYSY 438
Query: 622 LFAAFFQARRHSEAQDLLSK 641
L A + R A++LL +
Sbjct: 439 LIVALCRENRPFAAKNLLER 458
Score = 44.3 bits (103), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 47/200 (23%), Positives = 82/200 (41%), Gaps = 9/200 (4%)
Query: 414 VLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASG 473
++KA + +GR+ E + + M GF+ + + + L D E + ME G
Sbjct: 194 LVKAYLRMGRVREGLRSFRRMLRVGFVPTVITSNYLLNGLLKLNYTDRCWEVYEEMERFG 253
Query: 474 SDVGDKMWVSLIKGH--CVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAI 531
+ ++ I H C GD K +KM E+EG + L+N+YC K R
Sbjct: 254 --IAPNLYTFNILTHVLCKDGDTGKVNKFLEKM-EEEGFDPDIVTYNTLINSYCRKGRLD 310
Query: 532 DACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFV---DPF 588
DA +++ + + P +Y L+ L + ++A L M G P + +
Sbjct: 311 DAF-YLYKIMYRRGVVPDLVSYTALMNGLCKEGRVREAHQLFHRMVHRGLSPDIVTYNTL 369
Query: 589 IKYVSKSGTSDDAIAFLKGM 608
I K G ++ + L M
Sbjct: 370 IHGYCKEGKMQESRSLLHDM 389
>gi|357145546|ref|XP_003573680.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g65560-like [Brachypodium distachyon]
Length = 739
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/181 (25%), Positives = 78/181 (43%), Gaps = 2/181 (1%)
Query: 403 GNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEA 462
G V T ++L L G + E + M+ G ++ + + L AG+ EA
Sbjct: 137 GCVRTAFTYTALLHGLCGAGMVREAMSVFAGMQADGCAPDPHVYATMVHGLCGAGRTREA 196
Query: 463 NEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVN 522
+ A G + ++ +LI G+C GDL+ A D F++M + G S L++
Sbjct: 197 ETLLSDAMAEGFEPNVVVYNALIDGYCNVGDLELAVDVFERM-DVNGCSPNVRTYTELIS 255
Query: 523 TYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFP 582
+C K+R +D + + + + L P TY LI+ A LL M++ G
Sbjct: 256 GFC-KSRKLDRAMMLFSRMVDAGLVPNVVTYTALIQGQCSDGQLDCAYRLLQSMENSGLV 314
Query: 583 P 583
P
Sbjct: 315 P 315
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 63/284 (22%), Positives = 123/284 (43%), Gaps = 11/284 (3%)
Query: 323 VLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIV 382
+L + ++G+E + ++ + ++ AVD++E P+V T L+
Sbjct: 199 LLSDAMAEGFEPNVVVYNALIDGYCNVGDLELAVDVFERMDVNGCSPNVRTYTELISGFC 258
Query: 383 VSKQLD--MRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFI 440
S++LD M LFS++V + G V ++++ S G++ ++L++ME G +
Sbjct: 259 KSRKLDRAMMLFSRMV----DAGLVPNVVTYTALIQGQCSDGQLDCAYRLLQSMENSGLV 314
Query: 441 ASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADC 500
+ S + L + EA + + G V + ++ SLI G C AG AAD
Sbjct: 315 PNEWTCSVLIDALCKHERVGEAQLLLGSLIQKGIKVNEIVYTSLIDGLCKAGRF-AAADR 373
Query: 501 FQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNL 560
+ + +G + L++ C + + + V + + E ++P TY +I L
Sbjct: 374 LMQTLVSQGFVPDAHTYSSLIDGLC-RQKELSEAMLVLDDMMEKGVQPSPVTYTIIIDEL 432
Query: 561 LVQRGFKDALSLLCLMKDHGFPPFV---DPFIKYVSKSGTSDDA 601
+ + G + +L M G P V F++ G +DA
Sbjct: 433 VREVGADGSKKILDKMIAAGIKPDVFTYTIFVRSYCHEGRMEDA 476
Score = 45.1 bits (105), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 54/261 (20%), Positives = 110/261 (42%), Gaps = 4/261 (1%)
Query: 323 VLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIV 382
V + M G + T +++ F + + A+ L+ + P+V T L++
Sbjct: 234 VFERMDVNGCSPNVRTYTELISGFCKSRKLDRAMMLFSRMVDAGLVPNVVTYTALIQGQC 293
Query: 383 VSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIAS 442
QLD ++++ +G V + + ++ AL R+GE +L ++ + G +
Sbjct: 294 SDGQLDCAY--RLLQSMENSGLVPNEWTCSVLIDALCKHERVGEAQLLLGSLIQKGIKVN 351
Query: 443 SNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQ 502
+ + + L AG+ A+ M + + G + SLI G C +L +A
Sbjct: 352 EIVYTSLIDGLCKAGRFAAADRLMQTLVSQGFVPDAHTYSSLIDGLCRQKELSEAMLVLD 411
Query: 503 KMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLV 562
M+EK G + ++++ + A D K + + + +KP TY +++
Sbjct: 412 DMMEK-GVQPSPVTYTIIIDELVREVGA-DGSKKILDKMIAAGIKPDVFTYTIFVRSYCH 469
Query: 563 QRGFKDALSLLCLMKDHGFPP 583
+ +DA ++ M DHG P
Sbjct: 470 EGRMEDAEHMMLHMVDHGVCP 490
>gi|15233383|ref|NP_193806.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75211707|sp|Q9SVH3.1|PP328_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g20740
gi|5262214|emb|CAB45840.1| putative protein [Arabidopsis thaliana]
gi|7268870|emb|CAB79074.1| putative protein [Arabidopsis thaliana]
gi|332658957|gb|AEE84357.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 727
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 92/422 (21%), Positives = 160/422 (37%), Gaps = 54/422 (12%)
Query: 250 WGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMAS 309
WG V +L L + + + V KLG++ A FF WA + KHD ++YNA A
Sbjct: 109 WGPSVVSELNKLRRVTPSIVAE--VLKLGNDAAVAAKFFHWAGKQKGYKHDFAAYNAFAY 166
Query: 310 VLGRED---CIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACK 366
L R D+ +++D E + E +++ ++ +YE
Sbjct: 167 CLNRNGHFRAADQLPELMDSQGRPPSEKQFEILIRM---HADNRRGLRVYYVYEKMKKFG 223
Query: 367 NKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGE 426
KP V ++ +V + D+ L V F+E+G V ++K L GR+ E
Sbjct: 224 FKPRVFLYNRIMDALVKNGYFDLAL--AVYEDFKEDGLVEESTTFMILVKGLCKAGRIEE 281
Query: 427 CNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIK 486
+IL+ M E + + L S G D + D M + +L+
Sbjct: 282 MLEILQRMRENLCKPDVFAYTAMIKTLVSEGNLDASLRVWDEMRRDEIKPDVMAYGTLVV 341
Query: 487 GHCVAGDLDKAADCFQKMVEK-----------------------------EGTSHAGYAI 517
G C G +++ + F +M K E +GY
Sbjct: 342 GLCKDGRVERGYELFMEMKGKQILIDREIYRVLIEGFVADGKVRSACNLWEDLVDSGYIA 401
Query: 518 DL-----LVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSL 572
D+ ++ CS N+ A K + E +L+P T ++ +V D ++
Sbjct: 402 DIGIYNAVIKGLCSVNQVDKAYKLFQVAIEE-ELEPDFETLSPIMVAYVVMNRLSDFSNV 460
Query: 573 LCLMKDHGFP--PFVDPFIKYV----SKSGTSDDAIAFLKGMTSKRFPSMSVVLCLFAAF 626
L + + G+P ++ F K + K+ + D LK +K S+SV L A
Sbjct: 461 LERIGELGYPVSDYLTQFFKLLCADEEKNAMALDVFYILK---TKGHGSVSVYNILMEAL 517
Query: 627 FQ 628
++
Sbjct: 518 YK 519
>gi|449495714|ref|XP_004159923.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At5g39710-like [Cucumis sativus]
Length = 749
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 77/348 (22%), Positives = 128/348 (36%), Gaps = 53/348 (15%)
Query: 303 SYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFA 362
SYN + + L RE + ++L+EM + Y + T ++ + +A+ L+ A
Sbjct: 275 SYNVVINGLCREGQMKETSEILEEMSKRRYVPDRVTFNTLINGYCNVGNFHQALVLH--A 332
Query: 363 MACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVG 422
KN S N T+ ++NS+ KA G
Sbjct: 333 EMVKNGLSPNVVTY-------------------------------TTLINSMCKA----G 357
Query: 423 RMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWV 482
+ + L M + G + + + S G +A + M M +G +
Sbjct: 358 NLNRAMEFLDQMRDRGLHPNGRTYTTLIDGFSQQGFLKQAYQIMKEMVENGFTPTIITYN 417
Query: 483 SLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDL-----LVNTYCSKNRAIDACKFV 537
+LI GHC+ G ++ A+ Q+M+E+ G+ D+ +++ +C A +
Sbjct: 418 ALINGHCILGRMEDASGLLQEMIER------GFIPDVVSYSTIISGFCRNQELEKAFQLK 471
Query: 538 HNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPP---FVDPFIKYVSK 594
V + + P TY LI+ L QR + L M G PP I
Sbjct: 472 VEMVAK-GISPDVATYSSLIQGLCKQRRLGEVCDLFQEMLSLGLPPDEVTYTSLINAYCI 530
Query: 595 SGTSDDAIAFLKGMTSKRF-PSMSVVLCLFAAFFQARRHSEAQDLLSK 641
G D A+ M K F P + L F + R EA+ LL K
Sbjct: 531 EGDLDKALRLHDEMIQKGFSPDIVTYNVLINGFNKQSRTKEAKRLLLK 578
Score = 43.5 bits (101), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 59/286 (20%), Positives = 124/286 (43%), Gaps = 28/286 (9%)
Query: 293 ESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMV 352
E GF+ D SY+ + S R +++ +++ EM +KG ++ T ++ ++ +
Sbjct: 441 ERGFIP-DVVSYSTIISGFCRNQELEKAFQLKVEMVAKGISPDVATYSSLIQGLCKQRRL 499
Query: 353 KEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLD--MRLFSKVVRVFRENGNVLTDAM 410
E DL++ ++ P T L+ + LD +RL ++++ V + +
Sbjct: 500 GEVCDLFQEMLSLGLPPDEVTYTSLINAYCIEGDLDKALRLHDEMIQKGFSPDIVTYNVL 559
Query: 411 LNSVLKALISVGRMGECNKIL-KAMEEGGFIAS----------SNMKSKIAFRLSSA--- 456
+N K R E ++L K + E +N++ K A L
Sbjct: 560 INGFNKQ----SRTKEAKRLLLKLLYEESVPNEITYNTLIDNCNNLEFKSALALMKGFCM 615
Query: 457 -GKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGY 515
G +EA+ ++ M G + ++++ +I GH G+++KA + +++M+ H+G+
Sbjct: 616 KGLMNEADRVLESMLQKGYKLNEEVYNVIIHGHSKVGNIEKAYNLYKEML------HSGF 669
Query: 516 AIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLL 561
A + +K+ + + N + +Y LK T L K L+
Sbjct: 670 APHSVTIMALAKSLYHEGKEVELNQLLDYTLKSCRITEAALAKVLI 715
>gi|357450985|ref|XP_003595769.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355484817|gb|AES66020.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 497
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 61/269 (22%), Positives = 116/269 (43%), Gaps = 27/269 (10%)
Query: 246 RSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYN 305
R D + +E+ L + + +N+LV V+ + + K A IFF+W ++ YN
Sbjct: 76 RRDKPTEQIEQALNLIGIHPNNNLVLQVLQRHRSDWKPAFIFFKWVSKTNNYTPSCEVYN 135
Query: 306 AMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLY----EF 361
+ ++LG+ C + +VLDEM + + ET ++ RF + ++EA++++ EF
Sbjct: 136 EIINILGKMKCFEELHQVLDEMSQRKEFINEETFCILIRRFVAAHKLEEAINIFYRREEF 195
Query: 362 AMACKNKPSVNCCTFLLRKIVVSKQLD--MRLFSKVVRVFRENGNVLTDAMLNSVLKALI 419
+ N+ LL + K ++ LF + + FR ++ T N +L
Sbjct: 196 GL--DNELDSKAFRTLLMWMCRYKHIEEAETLFHRNLNKFRFCRDIKT---WNVILNGWC 250
Query: 420 SVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDK 479
+G E ++ K + IA++ G E ++ E+ DV
Sbjct: 251 VLGNTHEAKRLWKDI--------------IAYKCKEIGNCFEVVQWDVEEESCKPDVV-- 294
Query: 480 MWVSLIKGHCVAGDLDKAADCFQKMVEKE 508
++ LI G C + +A F M E++
Sbjct: 295 IFNCLIDGLCFKKRIPEALQVFHDMKERD 323
>gi|302760809|ref|XP_002963827.1| hypothetical protein SELMODRAFT_79421 [Selaginella moellendorffii]
gi|300169095|gb|EFJ35698.1| hypothetical protein SELMODRAFT_79421 [Selaginella moellendorffii]
Length = 616
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 79/354 (22%), Positives = 149/354 (42%), Gaps = 15/354 (4%)
Query: 288 FRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFS 347
FR ++ + D + N + S + ++ ++ ++LD M+ G ++ T ++
Sbjct: 191 FREKMKAAGINPDVLTCNILVSGICKDGDVEEALEILDGMKLAGPVPDVITYNSIIHALC 250
Query: 348 ERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLT 407
V EA ++ + M+C P + LL + L R + + REN +L
Sbjct: 251 VAGKVVEAAEILK-TMSCS--PDLVTFNTLLDGFCKAGMLP-RALEVLEEMCREN--ILP 304
Query: 408 DAMLNSVL-KALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFM 466
D + ++L L VG++ +L+ + G+I + + L +G+ +EA++ +
Sbjct: 305 DVITYTILVNGLCRVGQVQVAFYLLEEIVRQGYIPDVIAYTSLVDGLCKSGEIEEAHKLV 364
Query: 467 DHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCS 526
M G G M+ SL+ G+C AG++ KA + +MV + ++++
Sbjct: 365 KEMSVRGCRTGVVMYSSLVSGYCRAGNVHKAREILAEMVSINMVPPL-FTYNIVLGGLIK 423
Query: 527 KNRAIDACKFVHNCV-REYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHG-FPPF 584
A + + V R Y P TY LI L ++A L M G FP
Sbjct: 424 DGSISKAVSLISDLVARGY--VPDVVTYNTLIDGLCKANRVREACDLADEMASRGCFPND 481
Query: 585 V--DPFIKYVSKSGTSDDAIAFLKGMTSKRF-PSMSVVLCLFAAFFQARRHSEA 635
V + + + G DDA + + M+ KR P++ V L ++ R +A
Sbjct: 482 VTLGSVVFGLCRVGRVDDAWSLVVEMSRKRHAPNVVVYTSLIDGLCKSDRMDDA 535
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 89/403 (22%), Positives = 157/403 (38%), Gaps = 50/403 (12%)
Query: 281 PKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMET-- 338
P A+ FF WA E KHD SYN + +L + R KV ++ G + T
Sbjct: 7 PDLAIQFFDWAGEQDGYKHDVHSYNHLLDILVKSGHHFRTGKVYKDLLHSGCSPNLVTFK 66
Query: 339 ------C----------------------------VKVLGRFSERNMVKEAVDLYEFAMA 364
C V + G F + N +AV L+E +
Sbjct: 67 ILIRGNCKAGQAMRALEFLRALDEFSVAPDVYIFNVLIHGLFKDGN-PDQAVKLFENMES 125
Query: 365 CKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAML-NSVLKALISVGR 423
+ KP + ++ + S L+ + + + R+ G D + N+++ A R
Sbjct: 126 SRVKPEIVTYNTVISGLCKSGNLE-KARELLEEMIRKGGKSAPDIVTYNTLINAFYRASR 184
Query: 424 MGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVS 483
+ E + M+ G + + + G +EA E +D M+ +G + S
Sbjct: 185 IREACAFREKMKAAGINPDVLTCNILVSGICKDGDVEEALEILDGMKLAGPVPDVITYNS 244
Query: 484 LIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVRE 543
+I CVAG + +AA+ + M S + L++ +C A + + RE
Sbjct: 245 IIHALCVAGKVVEAAEILKTM----SCSPDLVTFNTLLDGFCKAGMLPRALEVLEEMCRE 300
Query: 544 YDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPFIKYVS---KSGTSDD 600
++ P TY L+ L + A LL + G+ P V + V KSG ++
Sbjct: 301 -NILPDVITYTILVNGLCRVGQVQVAFYLLEEIVRQGYIPDVIAYTSLVDGLCKSGEIEE 359
Query: 601 AIAFLKGMTSKRFPSMSVVL--CLFAAFFQARRHSEAQDLLSK 641
A +K M S R VV+ L + + +A +A+++L++
Sbjct: 360 AHKLVKEM-SVRGCRTGVVMYSSLVSGYCRAGNVHKAREILAE 401
>gi|222640310|gb|EEE68442.1| hypothetical protein OsJ_26820 [Oryza sativa Japonica Group]
Length = 621
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 69/302 (22%), Positives = 130/302 (43%), Gaps = 28/302 (9%)
Query: 329 SKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLD 388
S G+E + ++ + ++ A+ ++E + P+V T L+ + S +++
Sbjct: 205 SNGFEPNIVVYNALIDGYCNAGEMEHALKVFEGMDGNRCSPNVRTYTELIHGLCKSGKVE 264
Query: 389 --MRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECN--------KILKAMEEGG 438
M LFS++V E NV+T ALI G+CN ++L ME G
Sbjct: 265 RAMVLFSRMVEAGLEP-NVVT-------YTALIQ----GQCNEGHLQCAFRLLHLMETNG 312
Query: 439 FIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAA 498
+ + S + L K +EA F+ + G V + ++ SLI G C G +D A
Sbjct: 313 LVPNDWTFSVLIDALCKREKVEEAQLFLGSLVKKGVKVNEVVYTSLIDGLCKTGKIDAAD 372
Query: 499 DCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIK 558
+ QKM+ EG ++ L++ C + + A + + + E ++ TY +I
Sbjct: 373 ELMQKMI-SEGFVPDAHSYSSLIDGLCRQKKLSQATLMLED-MMEKGIQASPVTYTIIID 430
Query: 559 NLLVQRGFKDALSLLCLMKDHGFPPFV---DPFIKYVSKSGTSDDAIAFLKGMTSKR-FP 614
L+ + G + + M G P + F++ + G +DA + + M + FP
Sbjct: 431 ELVREVGSEGPKKIFDKMIATGINPDIVTYTVFVRSYCEEGRMEDAESMIVQMVDRGVFP 490
Query: 615 SM 616
++
Sbjct: 491 NL 492
Score = 40.8 bits (94), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 42/196 (21%), Positives = 87/196 (44%), Gaps = 5/196 (2%)
Query: 391 LFSKVVRVF---RENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKS 447
+ + RVF G + T ++L L+ G + E + M +++ +
Sbjct: 122 MLTHACRVFVLMPLRGCLRTAFTYTALLHGLLGAGMVREAMAVFVGMRADSCAPDTHVYA 181
Query: 448 KIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEK 507
+ L AG+ +EA ++ ++G + ++ +LI G+C AG+++ A F+ M
Sbjct: 182 TMVHGLCEAGRTEEAEVLLEEAMSNGFEPNIVVYNALIDGYCNAGEMEHALKVFEGMDGN 241
Query: 508 EGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFK 567
+ + + L++ C K+ ++ + + + E L+P TY LI+ + +
Sbjct: 242 RCSPNVRTYTE-LIHGLC-KSGKVERAMVLFSRMVEAGLEPNVVTYTALIQGQCNEGHLQ 299
Query: 568 DALSLLCLMKDHGFPP 583
A LL LM+ +G P
Sbjct: 300 CAFRLLHLMETNGLVP 315
>gi|147833070|emb|CAN77584.1| hypothetical protein VITISV_034996 [Vitis vinifera]
Length = 913
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 101/493 (20%), Positives = 174/493 (35%), Gaps = 116/493 (23%)
Query: 262 NVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFW 321
N+ N L+K K + K L+ + W + GF D SY + + L + +
Sbjct: 123 NLQTYNILIKISCRKKQFDKAKELLNWMWGQ--GF-SPDVFSYGTLINSLAKNGYMSDAL 179
Query: 322 KVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAM----ACKNKPSVN----- 372
K+ DEM +G ++ ++ F ++ + A +++E + N PS N
Sbjct: 180 KLFDEMPERGVTPDVACYNILIDGFFKKGDILNASEIWERLLKGPSVYPNIPSYNVMING 239
Query: 373 ---CCTF------------------------LLRKIVVSKQLDMRLFSKVVRVFRENGNV 405
C F L+ + S LD ++V + ENG
Sbjct: 240 LCKCGKFDESFEIWHRMKKNERGQDLYTYSTLIHGLCGSGNLDGA--TRVYKEMAENGVS 297
Query: 406 LTDAMLNSVLKALISVGRMGECNKILKAMEEGG--FIASSNMKSKIAFR----------- 452
+ N++L + GR+ EC ++ K ME+ G + S N+ + F
Sbjct: 298 PDVVVYNTMLNGYLRAGRIEECLELWKVMEKEGCRTVVSYNILIRGLFENAKVDEAISIW 357
Query: 453 ---------------------LSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVA 491
L G ++A ++ E D+ + S+I G C
Sbjct: 358 ELLPEKDCCADSMTYGVLVHGLCKNGYLNKALSILEEAENGRGDLDTFAYSSMINGLCRE 417
Query: 492 GDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHT 551
G LD+ A +M K G Y + ++N + ++ DA +F N V + P
Sbjct: 418 GRLDEVAGVLDQMT-KHGCKPNPYVCNAVINGFVRASKLEDALRFFGNMVSK-GCFPTVV 475
Query: 552 TYEELIKNL---------------LVQRGFKD--------------------ALSLLCLM 576
TY LI L ++Q+G+K AL+L C
Sbjct: 476 TYNTLINGLSKAERFSEAYALVKEMLQKGWKPNMITYSLLMNGLCQGKKLDMALNLWCQA 535
Query: 577 KDHGFPPFV---DPFIKYVSKSGTSDDAIAFLKGMTSKR-FPSMSVVLCLFAAFFQARRH 632
+ GF P V + I + SG +DA+ M + P++ L F++ R
Sbjct: 536 LEKGFKPDVKMHNIIIHGLCSSGKVEDALQLYSEMKQRNCVPNLVTHNTLMEGFYKVRDF 595
Query: 633 SEAQDLLSKCPRY 645
A + +Y
Sbjct: 596 ERASKIWDHILQY 608
Score = 48.5 bits (114), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 79/383 (20%), Positives = 159/383 (41%), Gaps = 34/383 (8%)
Query: 293 ESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMV 352
E+G D +Y++M + L RE +D VLD+M G + C V+ F + +
Sbjct: 396 ENGRGDLDTFAYSSMINGLCREGRLDEVAGVLDQMTKHGCKPNPYVCNAVINGFVRASKL 455
Query: 353 KEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRE------NGNVL 406
++A+ + ++ P+V L+ + +++ FS+ + +E N++
Sbjct: 456 EDALRFFGNMVSKGCFPTVVTYNTLINGLSKAER-----FSEAYALVKEMLQKGWKPNMI 510
Query: 407 TDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFM 466
T ++L + L ++ + E GF M + I L S+GK ++A +
Sbjct: 511 TYSLL---MNGLCQGKKLDMALNLWCQALEKGFKPDVKMHNIIIHGLCSSGKVEDALQLY 567
Query: 467 DHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCS 526
M+ +L++G D ++A+ + +++ G + ++ + CS
Sbjct: 568 SEMKQRNCVPNLVTHNTLMEGFYKVRDFERASKIWDHILQY-GLQPDIISYNITLKGLCS 626
Query: 527 KNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVD 586
+R DA F+++ V + + P T+ L++ L +G+ + + + MK G P
Sbjct: 627 CHRISDAVGFLNDAV-DRGVLPTAITWNILVQGYLALKGYMEPVFVPASMK--GNPGMQM 683
Query: 587 PFIKYVSKSGTSDDAIA------FLKGMT-SKRFPSMSVVLCLFAAFFQARRHSEAQDLL 639
+ +V +S + FL T K FP+ ++ + + A HS +
Sbjct: 684 RYFGFVCDKLSSPLDVQQPVLCLFLVSETLRKSFPNFMCIIAEWYVYLPAVVHSPS---- 739
Query: 640 SKCPRYVRNHADVLNLLYSKKSG 662
R R H D + L+ K SG
Sbjct: 740 ----RSQRYHQDQI-LMMQKLSG 757
>gi|218188645|gb|EEC71072.1| hypothetical protein OsI_02831 [Oryza sativa Indica Group]
Length = 800
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/197 (23%), Positives = 96/197 (48%), Gaps = 9/197 (4%)
Query: 391 LFSKVVRVFRE--NGNVLTDAMLNSVLKALISVGRMGECNK---ILKAMEEGGFIASSNM 445
++ VR+F E + D + SV A+ S+ ++ + N+ +L+ M++ GF+
Sbjct: 192 MYDDAVRLFDEMPASEIEPDQRVCSV--AIASLCKLRDANRALLVLRKMQDAGFVPWDFT 249
Query: 446 KSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMV 505
+ + L G+ +EA D + A+G + + +L+ G+C+ ++ KA D F++ +
Sbjct: 250 FNSVVDVLVKGGRMEEALHIKDELLATGKKMSVVLATTLMHGYCLQREVRKALDIFEETL 309
Query: 506 EKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRG 565
++G +L+ C++ + + +R++ L P + +IK LL +
Sbjct: 310 -RDGLVPTDVTYTVLIRG-CTEEGMPEKAYELCRQMRDHGLLPSTNEFNMVIKGLLNDKL 367
Query: 566 FKDALSLLCLMKDHGFP 582
+KDA+SL M D G P
Sbjct: 368 WKDAVSLFKEMADSGIP 384
Score = 55.8 bits (133), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 75/340 (22%), Positives = 128/340 (37%), Gaps = 43/340 (12%)
Query: 256 RQLRDLNVTFSNDLVKFVVDKLGDEP--KKALIFFRWAEESGFVKHDESSYNAMASVLGR 313
RQ+RD + S + V+ L ++ K A+ F+ +SG D +YN + L +
Sbjct: 341 RQMRDHGLLPSTNEFNMVIKGLLNDKLWKDAVSLFKEMADSGI--PDAFTYNILIHWLCQ 398
Query: 314 EDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNC 373
I + ++M G + + T +L + + EAV LY P+V
Sbjct: 399 RRKIREALNLWEKMNETGVKPYIVTYHSLLLCYCVNGCMDEAVKLYTEMPGKGFTPNVVT 458
Query: 374 CTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKA 433
T L++ + D + ++ + + ++NG D N+++ L VGR+ E ++LK
Sbjct: 459 YTTLMKGHINKAAFD-KAYALLAEM-KQNGVSCNDYTYNTLINGLCVVGRVCEVGEMLKR 516
Query: 434 MEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGD 493
E GF+ ++ + I AG A M A G + S I G+C
Sbjct: 517 FETEGFVPTAMTYNSIINGFIKAGMMGSAFAVYQQMCAKGIPPNIVTYTSFIDGYC---- 572
Query: 494 LDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTY 553
TS A+ +L N VR L+P Y
Sbjct: 573 ---------------KTSCCDLALKML------------------NDVRCKGLRPDIAAY 599
Query: 554 EELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPFIKYVS 593
LI + AL +L LM G P + + +++
Sbjct: 600 NSLIYGFCQEGNMSHALQVLVLMLKDGLLPNISVYNSFIT 639
Score = 42.0 bits (97), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 65/314 (20%), Positives = 127/314 (40%), Gaps = 13/314 (4%)
Query: 262 NVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMAS---VLGREDCID 318
NV L+K ++K + KA +++G V ++ +YN + + V+GR +
Sbjct: 455 NVVTYTTLMKGHINKAAFD--KAYALLAEMKQNG-VSCNDYTYNTLINGLCVVGR---VC 508
Query: 319 RFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLL 378
++L ++G+ T ++ F + M+ A +Y+ A P++ T +
Sbjct: 509 EVGEMLKRFETEGFVPTAMTYNSIINGFIKAGMMGSAFAVYQQMCAKGIPPNIVTYTSFI 568
Query: 379 RKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGG 438
+ D+ L K++ R G A NS++ G M ++L M + G
Sbjct: 569 DGYCKTSCCDLAL--KMLNDVRCKGLRPDIAAYNSLIYGFCQEGNMSHALQVLVLMLKDG 626
Query: 439 FIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAA 498
+ + ++ + + +EA F + M G D+ + +LI G G++ A
Sbjct: 627 LLPNISVYNSFITGYKNLKMMEEALRFYEKMIKEGIDLDTATYTTLIDGFSKDGNVTFAL 686
Query: 499 DCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIK 558
+ +MV K G L + C +N ID + + + + D++P Y LI
Sbjct: 687 KLYSEMVAK-GNIPDHITFTALTHGLC-RNGDIDDARKLLDEMNRLDIRPNVLMYNMLIN 744
Query: 559 NLLVQRGFKDALSL 572
L ++A L
Sbjct: 745 GYLRNGKLQEAFRL 758
>gi|225425882|ref|XP_002266563.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04130,
mitochondrial [Vitis vinifera]
Length = 496
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 79/367 (21%), Positives = 148/367 (40%), Gaps = 23/367 (6%)
Query: 263 VTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWK 322
+ S +LV ++ + D+ K AL FRWAE +H +Y+ M +LG+ +D+
Sbjct: 74 IPMSQNLVDVLLHRFKDDWKSALGLFRWAESRLGYEHAPEAYDMMVDILGKLKQVDKMRA 133
Query: 323 VLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAV----DLYEFAMACKNKPSVNCCTFLL 378
+++EMR +G + + T K + R + ++AV DL F + KN S+N L
Sbjct: 134 LMEEMR-QGNLVRLSTVAKAMRRLAGAGEWEDAVRVFDDLGNFELE-KNTESMNLLLDTL 191
Query: 379 ---RKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAME 435
RK+ ++ + + L + + N T N + R+ E ++ M+
Sbjct: 192 CKERKVEQARAIFLELKPHI------SPNTHT---FNIFIHGWCKANRVDEAEWTIQEMK 242
Query: 436 EGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLD 495
G S I + E +D M+A G + +++ +
Sbjct: 243 GHGCRPCVISYSTIIQSYCRQSNFRKVYELLDDMQAQGCAPNVVTYTTIMCSLTKVEQFE 302
Query: 496 KAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEE 555
+A ++M G + L++T + +A + + + + P +TY
Sbjct: 303 EALQIAERM-RSVGCKPDTLFYNALIHTLGRAGQLREAVRVFEVEMPKTGVPPNTSTYNS 361
Query: 556 LIKNLLVQRGFKDALSLLCLMKDHGF-PPFVD---PFIKYVSKSGTSDDAIAFLKGMTSK 611
+I + AL+LL +++ F P + P +K K+G D FL M +K
Sbjct: 362 MIAMFCHHSQEQKALNLLREIENSTFCKPDIQTYYPVLKSCFKTGKIDSLSNFLDDMVNK 421
Query: 612 RFPSMSV 618
S+ V
Sbjct: 422 HHLSLDV 428
>gi|108711050|gb|ABF98845.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
gi|215693326|dbj|BAG88708.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222625789|gb|EEE59921.1| hypothetical protein OsJ_12549 [Oryza sativa Japonica Group]
Length = 554
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 82/396 (20%), Positives = 152/396 (38%), Gaps = 55/396 (13%)
Query: 262 NVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFW 321
+V + LV ++ + ++ A FF W G H SY+ M +LG+ D W
Sbjct: 127 SVRVTGCLVDKILTRFSNDWVAAFGFFMWVGTQGGYCHCADSYDLMVDILGKFKQFDLMW 186
Query: 322 KVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYE----FAMACKNKPSVNCCTFL 377
++++M G M + T KV+ R + + EA+D + F + K+ ++N
Sbjct: 187 GLINQMVEVGGLMSLMTMTKVMRRLAGASRWTEAIDAFHKMDRFGVV-KDTKAMN----- 240
Query: 378 LRKIVVSKQLDMRLFSKVVRVFRE-NGNVLTDA-MLNSVLKALISVGRMGECNKILKAME 435
+++ R + VF+E G + D N+++ + E ++ M+
Sbjct: 241 ---VLLDTLCKERSVKRARGVFQELRGTIPPDENSFNTLVHGWCKARMLKEALDTMEEMK 297
Query: 436 EGGFIAS------------------------SNMKSK-----------IAFRLSSAGKKD 460
+ GF S M+ + + L AG+
Sbjct: 298 QHGFSPSVVTYTSLVEAYCMEKDFQTVYALLDEMRKRRCPPNVVTYTILMHALGKAGRTR 357
Query: 461 EANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLL 520
EA + D ++ G + SLI AG L+ A ++M G + + L
Sbjct: 358 EALDTFDKLKEDGVAPDASFYNSLIYILGRAGRLEDAYSVVEEM-RTTGIAPNVTTFNTL 416
Query: 521 VNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHG 580
++ C ++A +A K + + E P TY L+K ++ K L L+C M
Sbjct: 417 ISAACDHSQAENALKLLVK-MEEQSCNPDIKTYTPLLKLCCKRQWVKILLFLVCHMFRKD 475
Query: 581 FPPFVDPF---IKYVSKSGTSDDAIAFLKGMTSKRF 613
P + + ++ ++G + FL+ M SK F
Sbjct: 476 ISPDFSTYTLLVSWLCRNGKVAQSCLFLEEMVSKGF 511
Score = 44.7 bits (104), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 64/150 (42%), Gaps = 7/150 (4%)
Query: 496 KAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEE 555
+A D F KM ++ G A+++L++T C K R++ + V +R + P ++
Sbjct: 219 EAIDAFHKM-DRFGVVKDTKAMNVLLDTLC-KERSVKRARGVFQELRG-TIPPDENSFNT 275
Query: 556 LIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPFIKYVSKSGTSDD---AIAFLKGMTSKR 612
L+ R K+AL + MK HGF P V + V D A L M +R
Sbjct: 276 LVHGWCKARMLKEALDTMEEMKQHGFSPSVVTYTSLVEAYCMEKDFQTVYALLDEMRKRR 335
Query: 613 FPSMSVVLC-LFAAFFQARRHSEAQDLLSK 641
P V L A +A R EA D K
Sbjct: 336 CPPNVVTYTILMHALGKAGRTREALDTFDK 365
>gi|296086456|emb|CBI32045.3| unnamed protein product [Vitis vinifera]
Length = 648
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 73/345 (21%), Positives = 139/345 (40%), Gaps = 12/345 (3%)
Query: 297 VKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAV 356
+K + +YN + +L + + +VL EM S+G + ++ F + V A
Sbjct: 219 LKPNPYTYNGVILLLCKTGKVAEAERVLREMISEGIAPDGVIYTTLIDGFCKLGNVSSAY 278
Query: 357 DLYEFAMACKNKPSVNCCTFLLRKIVVSKQL--DMRLFSKVVRVFRENGNVLTDAMLNSV 414
L++ K P T ++ + + ++ +LF ++V E V A+++
Sbjct: 279 RLFDEMQKRKISPDFITYTAVICGLCQTGRVMEADKLFHEMVCKRLEPDEVTYTALIDGY 338
Query: 415 LKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGS 474
K G+M E + M + G + + +A L G+ D ANE + M G
Sbjct: 339 CKE----GKMKEAFSLHNQMLQMGLTPNIVTYTALADGLCKCGEVDTANELLHEMCRKGL 394
Query: 475 DVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDAC 534
++ + SL+ G C AG++D+A + M E G L++ YC + A
Sbjct: 395 ELNIYTYNSLVNGLCKAGNIDQAVKLMKDM-EVAGFHPDAVTYTTLMDAYCKSREMVRAH 453
Query: 535 KFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPFIKYVSK 594
+ + + + +L+P T+ L+ + +D LL M + G P + + +
Sbjct: 454 ELLRQML-DRELQPTVVTFNVLMNGFCMSGMLEDGEKLLKWMLEKGIMPNATTYNSLIKQ 512
Query: 595 SGTSDDAIA---FLKGMTSKR-FPSMSVVLCLFAAFFQARRHSEA 635
++ A +GM +K P + L +AR EA
Sbjct: 513 YCIRNNMRATTEIYRGMCAKGVVPDGNTYNILIKGHCKARNMKEA 557
Score = 49.7 bits (117), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 70/287 (24%), Positives = 108/287 (37%), Gaps = 45/287 (15%)
Query: 361 FAMAC-KNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNV---------LTDAM 410
F AC + PS+ + + SK D+++ K+++ F N N+ L D M
Sbjct: 115 FEWACLRRDPSLEARCIVAQIATASK--DLKMARKLIQDFWVNPNLDVGVSFARKLFDKM 172
Query: 411 LNSVLKALISVGRMGECN-----------------------KILKAMEEGGFIASSNMKS 447
LN L LISV CN K+++ M+ G + +
Sbjct: 173 LNYGL--LISVD---SCNLFISHLSEDLDGIKIALKGEWVLKLIEEMQIKGLKPNPYTYN 227
Query: 448 KIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEK 507
+ L GK EA + M + G ++ +LI G C G++ A F +M +K
Sbjct: 228 GVILLLCKTGKVAEAERVLREMISEGIAPDGVIYTTLIDGFCKLGNVSSAYRLFDEM-QK 286
Query: 508 EGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFK 567
S ++ C R ++A K H V + L+P TY LI + K
Sbjct: 287 RKISPDFITYTAVICGLCQTGRVMEADKLFHEMVCK-RLEPDEVTYTALIDGYCKEGKMK 345
Query: 568 DALSLLCLMKDHGFPPFVDPFIKY---VSKSGTSDDAIAFLKGMTSK 611
+A SL M G P + + + K G D A L M K
Sbjct: 346 EAFSLHNQMLQMGLTPNIVTYTALADGLCKCGEVDTANELLHEMCRK 392
>gi|343887304|dbj|BAK61850.1| PPR containing protein [Citrus unshiu]
Length = 567
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 93/431 (21%), Positives = 173/431 (40%), Gaps = 49/431 (11%)
Query: 118 SKQLELSGVVFTHEMVLKVLKNLESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVGVH 177
+KQ+E ++++ +L VL + +S A FF+ ++++ TY M+R
Sbjct: 149 AKQIENGACLYSYNSLLGVLVRV-NSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKM 207
Query: 178 GLVQEFWGLVDVMKKKGYGVASHVRNKMTEKFEKEGLESDLEKLKGIFATGSIDNSIEKV 237
G+++ + DVM K +A N M F K+G D+E + +F +++
Sbjct: 208 GMIENAKKVFDVMTVKPNLLA---YNTMINGFCKKG---DMESARLVF---------DRM 252
Query: 238 ASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFV 297
S G+D +VT++ + + +E KK + G
Sbjct: 253 MS-----------GEDCLPN----HVTYTTLIDGYCKKGELEEAKKCM---NEMMNRG-C 293
Query: 298 KHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVD 357
+ +E +YNAM L +D ++ +MR G++ + T +L +AV
Sbjct: 294 RPNELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGKFDQAVG 353
Query: 358 LYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKA 417
M P V ++ + D + +++ R G T N+V +
Sbjct: 354 YLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAI--SLLKEMRARGLKPTVFSFNAVFRI 411
Query: 418 LISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSA-GKKDEANEFMDHMEASGSDV 476
L+ G + +LK M + + + + I L A G+ + + +D M SG ++
Sbjct: 412 LVENGELDRAILLLKQMPQMDCLPNFVSYNTIICGLCMAKGRMQDVEDLVDRMIRSGHNL 471
Query: 477 GDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDL-----LVNTYCSKNRAI 531
M+ L+KG+C G+++ +MV K+ Y I L LV C+K +
Sbjct: 472 DFTMYSCLLKGYCEEGNVENVMQIAHEMVTKK------YVIGLESFSVLVKQLCAKGKVT 525
Query: 532 DACKFVHNCVR 542
+A K C R
Sbjct: 526 EAEKLFDTCSR 536
Score = 44.3 bits (103), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 93/433 (21%), Positives = 163/433 (37%), Gaps = 67/433 (15%)
Query: 266 SNDLVKFVVDKLGDEPKKALIFFRWAEESGF----VKHDESSYNAMASVLGREDCIDRFW 321
SN + K + ++ P AL FF WA H Y A+ VL I
Sbjct: 55 SNIVTKVIYEQ--TNPYHALFFFNWASNPNPNPNKYHHTTPCYTAITDVLLSHSLISIAA 112
Query: 322 KVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKI 381
+L +K + + +K G +R VK A+ + A +N + LL +
Sbjct: 113 SLLKN-SNKLSDFFISKLIKAYG---DRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVL 168
Query: 382 VV--SKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEE--- 436
V S +L F ++V+ EN + ++++ +G + K+ M
Sbjct: 169 VRVNSIKLAEEFFHQIVK---ENVVPPDVSTYTTMIRGYCKMGMIENAKKVFDVMTVKPN 225
Query: 437 --------GGFIASSNMKS-KIAF-RLSSA--------------------GKKDEANEFM 466
GF +M+S ++ F R+ S G+ +EA + M
Sbjct: 226 LLAYNTMINGFCKKGDMESARLVFDRMMSGEDCLPNHVTYTTLIDGYCKKGELEEAKKCM 285
Query: 467 DHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKM----VEKEGTSHAGYAIDLLVN 522
+ M G + + ++I G C+ G +D+A KM + ++H ++
Sbjct: 286 NEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKS-----MLK 340
Query: 523 TYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFP 582
C + A ++ N V E ++ P +YE +I +A+SLL M+ G
Sbjct: 341 GLCVVGKFDQAVGYLRN-VMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRARGLK 399
Query: 583 PFVDPF---IKYVSKSGTSDDAIAFLKGMTS----KRFPSMSVVLCLFAAFFQARRHSEA 635
P V F + + ++G D AI LK M F S + ++C R +
Sbjct: 400 PTVFSFNAVFRILVENGELDRAILLLKQMPQMDCLPNFVSYNTIIC--GLCMAKGRMQDV 457
Query: 636 QDLLSKCPRYVRN 648
+DL+ + R N
Sbjct: 458 EDLVDRMIRSGHN 470
>gi|218193742|gb|EEC76169.1| hypothetical protein OsI_13484 [Oryza sativa Indica Group]
Length = 1874
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 82/396 (20%), Positives = 152/396 (38%), Gaps = 55/396 (13%)
Query: 262 NVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFW 321
+V + LV ++ + ++ A FF W G H SY+ M +LG+ D W
Sbjct: 1447 SVRVTGCLVDKILTRFSNDWVAAFGFFMWVGTQGGYCHCADSYDLMVDILGKFKQFDLMW 1506
Query: 322 KVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYE----FAMACKNKPSVNCCTFL 377
++++M G M + T KV+ R + + EA+D + F + K+ ++N
Sbjct: 1507 GLINQMVEVGGLMSLMTMTKVMRRLAGASRWTEAIDAFHKMDRFGVV-KDTKAMN----- 1560
Query: 378 LRKIVVSKQLDMRLFSKVVRVFRE-NGNVLTDA-MLNSVLKALISVGRMGECNKILKAME 435
+++ R + VF+E G + D N+++ + E ++ M+
Sbjct: 1561 ---VLLDTLCKERSVKRARGVFQELRGTIPPDENSFNTLVHGWCKARMLKEALDTMEEMK 1617
Query: 436 EGGFIAS------------------------SNMKSK-----------IAFRLSSAGKKD 460
+ GF S M+ + + L AG+
Sbjct: 1618 QHGFSPSVVTYTSLVEAYCMEKDFQTVYALLDEMRKRRCPPNVVTYTILMHALGKAGRTR 1677
Query: 461 EANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLL 520
EA + D ++ G + SLI AG L+ A ++M G + + L
Sbjct: 1678 EALDTFDKLKEDGVAPDASFYNSLIYILGRAGRLEDAYSVVEEM-RTTGIAPNVTTFNTL 1736
Query: 521 VNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHG 580
++ C ++A +A K + + E P TY L+K ++ K L L+C M
Sbjct: 1737 ISAACDHSQAENALKLLVK-MEEQSCNPDIKTYTPLLKLCCKRQWVKILLFLVCHMFRKD 1795
Query: 581 FPPFVDPF---IKYVSKSGTSDDAIAFLKGMTSKRF 613
P + + ++ ++G + FL+ M SK F
Sbjct: 1796 ISPDFSTYTLLVSWLCRNGKVAQSCLFLEEMVSKGF 1831
Score = 46.2 bits (108), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 65/155 (41%), Gaps = 7/155 (4%)
Query: 491 AGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWH 550
A +A D F KM ++ G A+++L++T C K R++ + V +R + P
Sbjct: 1534 ASRWTEAIDAFHKM-DRFGVVKDTKAMNVLLDTLC-KERSVKRARGVFQELRG-TIPPDE 1590
Query: 551 TTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPFIKYVSKSGTSDD---AIAFLKG 607
++ L+ R K+AL + MK HGF P V + V D A L
Sbjct: 1591 NSFNTLVHGWCKARMLKEALDTMEEMKQHGFSPSVVTYTSLVEAYCMEKDFQTVYALLDE 1650
Query: 608 MTSKRFPSMSVVLC-LFAAFFQARRHSEAQDLLSK 641
M +R P V L A +A R EA D K
Sbjct: 1651 MRKRRCPPNVVTYTILMHALGKAGRTREALDTFDK 1685
>gi|297723907|ref|NP_001174317.1| Os05g0275100 [Oryza sativa Japonica Group]
gi|255676205|dbj|BAH93045.1| Os05g0275100, partial [Oryza sativa Japonica Group]
Length = 213
Score = 57.8 bits (138), Expect = 2e-05, Method: Composition-based stats.
Identities = 45/156 (28%), Positives = 75/156 (48%), Gaps = 7/156 (4%)
Query: 439 FIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAA 498
F+ + S + +++G DEA D M ++G + SLI G C +G L +A
Sbjct: 5 FLPDNFTYSSLIHGCAASGSIDEAFSLRDVMLSAGLTPNIITYNSLIYGLCKSGKLSRAV 64
Query: 499 DCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIK 558
+ F K+ + +G S G + L++ YC + + +A K V E ++P TY LI
Sbjct: 65 NLFNKL-QSKGISPNGITYNTLIDEYCKEGKTTEAFKLKQKMVEE-GIQPTVITYSILIY 122
Query: 559 NLLVQRGFKDALSLLCLMKDHGFPPFVDP-FIKYVS 593
L Q ++A+ LL M ++ VDP +I Y +
Sbjct: 123 GLCTQGYMEEAIKLLDQMIENN----VDPNYITYCT 154
>gi|297853022|ref|XP_002894392.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297340234|gb|EFH70651.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 525
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 72/333 (21%), Positives = 122/333 (36%), Gaps = 40/333 (12%)
Query: 252 DDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVL 311
DD+E L + S++LV+ V+ + + A FF WA+ +H SY+ + +L
Sbjct: 53 DDLEHTLAAYSPRVSSNLVEQVLKRCKNLGFPAHRFFLWAKRIPDFEHSLESYHILVEIL 112
Query: 312 GREDCIDRFWKVLDEMRSKGY-EMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPS 370
G W L E R Y E+ + V +S N+ EA + + KP
Sbjct: 113 GCSKQFALLWDFLIEAREYNYFEITSKVFWIVFRAYSRANLPSEASRAFNRMVEFGIKPC 172
Query: 371 VNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKI 430
V+ L+ +L +L + +
Sbjct: 173 VD-------------------------------------DLDQLLHSLCDRKHVNHAQEF 195
Query: 431 LKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCV 490
+ G + S+ S + + A + D M + V + +L+ C
Sbjct: 196 FDKAKGFGIVPSAKTYSILVRGWARIRDASGARKVFDEMLENNCVVDLLAYNALLDALCK 255
Query: 491 AGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWH 550
+GD+D A FQ+M G Y+ + +++YC + A + V + ++ YDL P
Sbjct: 256 SGDVDGAYKMFQEM-GNLGLKPDAYSFAIFIHSYCDASDVHSAYQ-VLDRMKRYDLVPNV 313
Query: 551 TTYEELIKNLLVQRGFKDALSLLCLMKDHGFPP 583
T+ +IK L DA LL M G P
Sbjct: 314 YTFNHIIKTLCKNEKVDDAYLLLDEMIQKGANP 346
>gi|225459754|ref|XP_002284756.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20300,
mitochondrial-like [Vitis vinifera]
Length = 531
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 57/286 (19%), Positives = 116/286 (40%), Gaps = 19/286 (6%)
Query: 264 TFSNDLVKFVVDKLGD-----EPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCID 318
+ S+ +V+ V++K G + L FF WA H Y M + G+ D
Sbjct: 104 SVSSAIVRRVIEKCGGVRHGIPFPQTLAFFNWATNLEEFGHSPEPYMEMIDLAGKVRQFD 163
Query: 319 RFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKP-----SVNC 373
W+++D M+++ E+ +ET ++ R+ + + EAV + KP SV
Sbjct: 164 LAWQLIDLMKTRNVEIPVETFTILVRRYVKAGLAAEAVHAFNRMEDYGCKPDKIAFSVVI 223
Query: 374 CTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKA 433
+ ++ + Q F + F + V T S++ G + E ++
Sbjct: 224 SSLSKKRRAIEAQ---SFFDSLKDRFEPDVVVYT-----SLVHGWCRAGNISEAERVFGE 275
Query: 434 MEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGD 493
M+ G + S + L +G+ A++ M G D + +L++ H AG
Sbjct: 276 MKMAGIQPNVYTYSIVIDALCRSGQITRAHDVFSEMIDVGCDPNAITFNNLMRVHVKAGR 335
Query: 494 LDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHN 539
+K + +M ++ G + L+ ++C + +A K +++
Sbjct: 336 TEKVLQVYNQM-KRLGCPPDAITYNFLIESHCRDDNLEEAVKILNS 380
>gi|449453087|ref|XP_004144290.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g65560-like [Cucumis sativus]
gi|449522905|ref|XP_004168466.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g65560-like [Cucumis sativus]
Length = 915
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 74/360 (20%), Positives = 140/360 (38%), Gaps = 13/360 (3%)
Query: 269 LVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMR 328
++ F + +LG + + +F E+ + + +Y + L + D K+L+ M
Sbjct: 314 VIIFALCQLGRKTEALNMFKEMTEKH--CQPNVHTYTVLICSLCEDSNFDDAKKILNGML 371
Query: 329 SKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLD 388
KG + T ++ + ++ + A+++ + P+ L+ K +
Sbjct: 372 EKGLIPSVVTYNALIDGYCKKGLSASALEILSLMESNNCSPNARTYNELILGFCRGKNIH 431
Query: 389 --MRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMK 446
M L K++ + NV+T N ++ G +G K+L M E G +
Sbjct: 432 KAMSLLHKMLER-KLQPNVVT---YNILIHGQCKEGDLGSAYKLLSLMNESGLVPDEWTY 487
Query: 447 SKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVE 506
S L G +EA + ++ G + ++ +LI G+C G + KM+
Sbjct: 488 SVFIDTLCKRGLVEEARSLFESLKEKGIKANEVIYSTLIDGYCKVGKVSDGRFLLDKMLS 547
Query: 507 KEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGF 566
G + L++ YC K + + + + + + D++P TY LI NLL F
Sbjct: 548 A-GCVPNSITYNSLIDGYC-KEKNFKEARLLVDIMIKRDIEPAADTYTILIDNLLKDDEF 605
Query: 567 KDALSLLCLMKDHGFPPFV---DPFIKYVSKSGTSDDAIAFLKGMTSKRFPSMSVVLCLF 623
A + M G P V FI G DA + M +K +++ LF
Sbjct: 606 DQAHDMFDQMLSTGSHPDVFIYTAFIHAYCSHGRLKDAEVLICKMNAKGIMPDTMLYTLF 665
Score = 50.1 bits (118), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 83/373 (22%), Positives = 141/373 (37%), Gaps = 27/373 (7%)
Query: 277 LGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEM-- 334
L +P+ AL FF W + KH+ S+ +M ++L + + ++ + MR +
Sbjct: 86 LNLDPQTALAFFNWIGQKHGFKHNVQSHVSMLNIL----VPNGYLRIAENMRILMIKSTD 141
Query: 335 EMETCVKVLGRFSERNMVKEAVDLYEFAMA--CKNKPSVNCCTFLLRKIVVSKQLDMRLF 392
E + VL N VD ++F + C N + FL+ I K + + +
Sbjct: 142 SSENALFVLEMLRSMN---RRVDAFKFKLTLRCYNMLLMLLSRFLM--IDEMKSVYLEML 196
Query: 393 SKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFR 452
+V N+ T LN+++ +G + E + + + G + + +
Sbjct: 197 DDMV-----TPNIFT---LNTMVNGYCKLGNVVEAELYVSKIVQAGLSLDTFTYTSLILG 248
Query: 453 LSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSH 512
D AN M G + + +LI G C A +D+A F +M E +
Sbjct: 249 YCRNKNVDAANAIFLSMPNKGCLRNEVSYTNLIHGFCEARRVDEALKLFSQMHE-DNCWP 307
Query: 513 AGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSL 572
+++ C R +A + E +P TY LI +L F DA +
Sbjct: 308 TVRTYTVIIFALCQLGRKTEALNMFKE-MTEKHCQPNVHTYTVLICSLCEDSNFDDAKKI 366
Query: 573 LCLMKDHGFPPFV---DPFIKYVSKSGTSDDAIAFLKGMTSKRF-PSMSVVLCLFAAFFQ 628
L M + G P V + I K G S A+ L M S P+ L F +
Sbjct: 367 LNGMLEKGLIPSVVTYNALIDGYCKKGLSASALEILSLMESNNCSPNARTYNELILGFCR 426
Query: 629 ARRHSEAQDLLSK 641
+ +A LL K
Sbjct: 427 GKNIHKAMSLLHK 439
>gi|357117807|ref|XP_003560653.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At2g02150-like [Brachypodium distachyon]
Length = 692
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 129/615 (20%), Positives = 244/615 (39%), Gaps = 55/615 (8%)
Query: 2 RHQWRFLLFRNYPRSSLQFTGSSYYFQVPFNPNLTLHESL------HTLSSLLPTSSHT- 54
R RF+ F +++ + P + L L SL H LS LP+S+H
Sbjct: 16 RRNPRFIPF-CIAATAISTLPTGTTAATPISDRLRLLHSLQAVPADHLLSHPLPSSAHLC 74
Query: 55 ----FYSRFSRLPICYSRLINLIDP-KNPNFRNPMI-CSYSSEPAMEQKESDFTVVSDIF 108
+R P S L L+ P +P+ ++ + + A+ + S V D
Sbjct: 75 LAAHILARARLFPHSRSLLSRLLAPGHHPHLAASLVDLLHRAALALGPRRSALPSVVDTL 134
Query: 109 YKFSDVNDISKQLELSGVVFTHEMVLKVLKNLESSPDEARRFFNWVL-----EKESE--- 160
L G++ + L ++ L P+ R N +L E+ SE
Sbjct: 135 LSL---------LADRGLLDDAVLALARVRELRVPPNT--RTCNHILLCLARERSSELAW 183
Query: 161 RLSSK-------TYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRNKMTEKFEKEG 213
RL + T+N+M+ + G + E L+ MK G N + + + K G
Sbjct: 184 RLFEQLPAPNVFTFNIMIDFLCKEGDLAEARALLARMKAIGCSPDVVTYNSLIDGYGKCG 243
Query: 214 LESDLEKLKG-IFATGS-----IDNSIEKVASRICKVVRSDIWGDDVERQLRDLNV-TFS 266
++EKL G + G N++ + ++ R+ + +++R+ NV TFS
Sbjct: 244 ELEEVEKLVGEMRGCGCRPDVVTYNALVNCFCKFGRMERAYSYFAEMKREGVMANVVTFS 303
Query: 267 NDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDE 326
+ F + + ++A+ F G +K +E +Y + + +D + +E
Sbjct: 304 TFVDAFCKNGM---VREAMKLFAQMRMKG-MKPNEVTYTCLVDGTCKAGRLDDALVLTNE 359
Query: 327 MRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQ 386
M +G + + T ++ + V EA D++ + + T L+ V K
Sbjct: 360 MVQQGVPLNVVTYTVLVDGLCKEGKVAEAEDVFRLMERAGIRANELLYTTLIHGHFVYKN 419
Query: 387 LDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMK 446
+ L ++ ++ G L ++ +++ L ++ ++ E +L M+E G ++ +
Sbjct: 420 SERAL--SLLSEMKDKGMELDVSLYGALIWGLCNLQKLDEAKSLLNKMDECGLKPNNVIY 477
Query: 447 SKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVE 506
+ I A K+ EA + M SG + +L+ G C AG +D+A F KMV+
Sbjct: 478 TNIMDACFKARKESEAIALLQKMMDSGFRPNIVTYCALVDGLCKAGSIDEAISHFNKMVD 537
Query: 507 KEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGF 566
G A LV+ C KN +D + + + + + + L+ L Q
Sbjct: 538 L-GLEPNVQAYTALVDGLC-KNGRLDKAVLLLDEMIDKGMSLDNVVCTSLMDGHLKQGNL 595
Query: 567 KDALSLLCLMKDHGF 581
+DA +L M + G
Sbjct: 596 QDAFALKAKMINSGL 610
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 68/320 (21%), Positives = 128/320 (40%), Gaps = 52/320 (16%)
Query: 298 KHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVD 357
+ D +YNA+ + + ++R + EM+ +G + T + F + MV+EA
Sbjct: 261 RPDVVTYNALVNCFCKFGRMERAYSYFAEMKREGVMANVVTFSTFVDAFCKNGMVREA-- 318
Query: 358 LYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKA 417
M+LF+++ + V +++ KA
Sbjct: 319 -------------------------------MKLFAQMRMKGMKPNEVTYTCLVDGTCKA 347
Query: 418 LISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVG 477
GR+ + + M + G + + + L GK EA + ME +G
Sbjct: 348 ----GRLDDALVLTNEMVQQGVPLNVVTYTVLVDGLCKEGKVAEAEDVFRLMERAGIRAN 403
Query: 478 DKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDL-----LVNTYCSKNRAID 532
+ ++ +LI GH V + ++A +M +K G +D+ L+ C+ + +D
Sbjct: 404 ELLYTTLIHGHFVYKNSERALSLLSEMKDK------GMELDVSLYGALIWGLCNLQK-LD 456
Query: 533 ACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPFIKYV 592
K + N + E LKP + Y ++ R +A++LL M D GF P + + V
Sbjct: 457 EAKSLLNKMDECGLKPNNVIYTNIMDACFKARKESEAIALLQKMMDSGFRPNIVTYCALV 516
Query: 593 ---SKSGTSDDAIAFLKGMT 609
K+G+ D+AI+ M
Sbjct: 517 DGLCKAGSIDEAISHFNKMV 536
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 58/234 (24%), Positives = 90/234 (38%), Gaps = 6/234 (2%)
Query: 412 NSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEA 471
N+++ GRM M+ G +A+ S G EA + M
Sbjct: 268 NALVNCFCKFGRMERAYSYFAEMKREGVMANVVTFSTFVDAFCKNGMVREAMKLFAQMRM 327
Query: 472 SGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAI 531
G + + L+ G C AG LD A +MV+ +G +LV+ C + +
Sbjct: 328 KGMKPNEVTYTCLVDGTCKAGRLDDALVLTNEMVQ-QGVPLNVVTYTVLVDGLCKEGKVA 386
Query: 532 DACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFP---PFVDPF 588
+A + V + ++ Y LI V + + ALSLL MKD G
Sbjct: 387 EA-EDVFRLMERAGIRANELLYTTLIHGHFVYKNSERALSLLSEMKDKGMELDVSLYGAL 445
Query: 589 IKYVSKSGTSDDAIAFLKGMTSKRF-PSMSVVLCLFAAFFQARRHSEAQDLLSK 641
I + D+A + L M P+ + + A F+AR+ SEA LL K
Sbjct: 446 IWGLCNLQKLDEAKSLLNKMDECGLKPNNVIYTNIMDACFKARKESEAIALLQK 499
>gi|255660818|gb|ACU25578.1| pentatricopeptide repeat-containing protein [Junellia uniflora]
Length = 418
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 64/289 (22%), Positives = 115/289 (39%), Gaps = 5/289 (1%)
Query: 269 LVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMR 328
L++ VV + G A +F E G + D ++ + + + + +
Sbjct: 35 LIQIVVSRKGKGSASA-VFAAILETKGTQRSDIYVFSGLITAYLESGFLRDAIECYRLTK 93
Query: 329 SKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLD 388
+ + +TC KVL + K YE ++ C S+ L+ K+ +
Sbjct: 94 EHKFRVPFDTCRKVLEHLMKLKYFKLVWGFYEESLECGYPASLYFFNILMHSFC--KEGE 151
Query: 389 MRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSK 448
+RL V + G + N+++ I +G + E ++ AM+ G S
Sbjct: 152 IRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLNEGFRLKNAMQASGVQPDVYTYSV 211
Query: 449 IAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKE 508
+ L K D+ANE D M +G + +LI GHC G +D A + +++M+ +
Sbjct: 212 LINGLCKESKLDDANELFDEMLDNGLVPNSVSFTTLIDGHCKDGRVDLAMEIYKQMLS-Q 270
Query: 509 GTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELI 557
S + L+ C KN + + + N + LKP TY LI
Sbjct: 271 SLSPDLITYNTLIYGLC-KNGDLKQAQDLINEMSMKGLKPDKITYTTLI 318
Score = 48.5 bits (114), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 96/438 (21%), Positives = 171/438 (39%), Gaps = 44/438 (10%)
Query: 161 RLSSKTYNLMLRIVGVHGLVQEFWGLVD-VMKKKGYGVASHVRNKMTEKFEKEGLESDLE 219
R + ++Y M+ + H ++ E L+ V+ +KG G AS V + E K SD+
Sbjct: 10 RHTLQSYCTMIHFLCTHQMLPEAKTLIQIVVSRKGKGSASAVFAAILET--KGTQRSDIY 67
Query: 220 KLKGIFA----TGSIDNSIEKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVD 275
G+ +G + ++IE R+ K E + R V F D + V++
Sbjct: 68 VFSGLITAYLESGFLRDAIE--CYRLTK-----------EHKFR---VPF--DTCRKVLE 109
Query: 276 KLGDEPKKALIFFR--WA--EESGFVKHDESSY--NAMASVLGREDCIDRFWKVLDEMRS 329
L L +F+ W EES + S Y N + +E I V D +
Sbjct: 110 HL-----MKLKYFKLVWGFYEESLECGYPASLYFFNILMHSFCKEGEIRLAQSVFDAITK 164
Query: 330 KGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLD- 388
G + + ++ + + + E L A +P V + L+ + +LD
Sbjct: 165 WGLRPSVVSFNTLMNGYIKLGDLNEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKLDD 224
Query: 389 -MRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKS 447
LF +++ +NG V +++ GR+ +I K M +
Sbjct: 225 ANELFDEML----DNGLVPNSVSFTTLIDGHCKDGRVDLAMEIYKQMLSQSLSPDLITYN 280
Query: 448 KIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEK 507
+ + L G +A + ++ M G + +LI G C GDL+ A + ++M+ K
Sbjct: 281 TLIYGLCKNGDLKQAQDLINEMSMKGLKPDKITYTTLIDGSCKEGDLETAFEYRKRMI-K 339
Query: 508 EGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFK 567
E A L++ C + R++DA K + + LKP TY +I +
Sbjct: 340 ENIRLDDVAYTALISGLCQEGRSVDAEKMLREML-SVGLKPEIGTYTMIINEFCKKGDVW 398
Query: 568 DALSLLCLMKDHGFPPFV 585
L+ M+ G+ P V
Sbjct: 399 TGSKLMKEMQRDGYVPSV 416
>gi|334184106|ref|NP_178323.3| tetratricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|218546751|sp|P0C894.1|PP143_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At2g02150
gi|330250459|gb|AEC05553.1| tetratricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 761
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 88/434 (20%), Positives = 176/434 (40%), Gaps = 13/434 (2%)
Query: 145 DEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRNK 204
D+ +RFF ++ R + TYN+M+ + G V+ GL + MK +G + N
Sbjct: 244 DDVKRFFKDMI-GAGARPTVFTYNIMIDCMCKEGDVEAARGLFEEMKFRGLVPDTVTYNS 302
Query: 205 MTEKFEKEGLESD----LEKLKGIFATGSIDNSIEKVASRICKVVRSDIWGDDVERQLRD 260
M + F K G D E++K + + + + + CK + I G + R+++
Sbjct: 303 MIDGFGKVGRLDDTVCFFEEMKDMCCEPDV-ITYNALINCFCKFGKLPI-GLEFYREMKG 360
Query: 261 LNVTFSNDLVKFVVDKLGDEP--KKALIFFRWAEESGFVKHDESSYNAMASVLGREDCID 318
+ + +VD E ++A+ F+ G V +E +Y ++ + +
Sbjct: 361 NGLKPNVVSYSTLVDAFCKEGMMQQAIKFYVDMRRVGLVP-NEYTYTSLIDANCKIGNLS 419
Query: 319 RFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLL 378
+++ +EM G E + T ++ + +KEA +L+ P++ L+
Sbjct: 420 DAFRLGNEMLQVGVEWNVVTYTALIDGLCDAERMKEAEELFGKMDTAGVIPNLASYNALI 479
Query: 379 RKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGG 438
V +K +D L +++ + G + + + L S+ ++ ++ M+E G
Sbjct: 480 HGFVKAKNMDRAL--ELLNELKGRGIKPDLLLYGTFIWGLCSLEKIEAAKVVMNEMKECG 537
Query: 439 FIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAA 498
A+S + + + +G E +D M+ +V + LI G C + KA
Sbjct: 538 IKANSLIYTTLMDAYFKSGNPTEGLHLLDEMKELDIEVTVVTFCVLIDGLCKNKLVSKAV 597
Query: 499 DCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIK 558
D F ++ G +++ C N+ A V++ L P T Y L+
Sbjct: 598 DYFNRISNDFGLQANAAIFTAMIDGLCKDNQVEAATTLFEQMVQK-GLVPDRTAYTSLMD 656
Query: 559 NLLVQRGFKDALSL 572
Q +AL+L
Sbjct: 657 GNFKQGNVLEALAL 670
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 77/334 (23%), Positives = 132/334 (39%), Gaps = 29/334 (8%)
Query: 243 KVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDES 302
KVV +D+W D +L DL T + V V+ +L ++PK A FF+W+ KH
Sbjct: 86 KVVHNDLWDDPGLEKLFDL--TLAPIWVPRVLVELKEDPKLAFKFFKWSMTRNGFKHSVE 143
Query: 303 SYNAMASVLGREDCIDRFW---KVLDEMRSKGYEMEM--------ETCVKVLGRFSERNM 351
SY +A +L C ++ VL EM + ++ CV G F
Sbjct: 144 SYCIVAHILF---CARMYYDANSVLKEMVLSKADCDVFDVLWSTRNVCVPGFGVFDALFS 200
Query: 352 VKEAVDLYEFAMACKNK-------PSVNCCTFLLRKIV-VSKQLDMRLFSKVVRVFRENG 403
V + + E A+ C +K P C LL + + K D++ F K +
Sbjct: 201 VLIDLGMLEEAIQCFSKMKRFRVFPKTRSCNGLLHRFAKLGKTDDVKRFFKDMIGAGARP 260
Query: 404 NVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEAN 463
V T N ++ + G + + + M+ G + + + + G+ D+
Sbjct: 261 TVFT---YNIMIDCMCKEGDVEAARGLFEEMKFRGLVPDTVTYNSMIDGFGKVGRLDDTV 317
Query: 464 EFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNT 523
F + M+ + + +LI C G L + +++M + G + LV+
Sbjct: 318 CFFEEMKDMCCEPDVITYNALINCFCKFGKLPIGLEFYREM-KGNGLKPNVVSYSTLVDA 376
Query: 524 YCSKNRAIDACKFVHNCVREYDLKPWHTTYEELI 557
+C + A KF + +R L P TY LI
Sbjct: 377 FCKEGMMQQAIKFYVD-MRRVGLVPNEYTYTSLI 409
>gi|357449339|ref|XP_003594946.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|124359380|gb|ABN05846.1| Tetratricopeptide-like helical [Medicago truncatula]
gi|355483994|gb|AES65197.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 849
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 72/306 (23%), Positives = 112/306 (36%), Gaps = 82/306 (26%)
Query: 282 KKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFW----KVLDEMRSKGYEMEME 337
K+A+ F +E+G + +YN M V G+ + R W ++LDEMRSKG E +
Sbjct: 254 KRAIEIFEKMKETG-LDPTLVTYNVMLDVYGK---MGRAWSMILELLDEMRSKGLEFDEF 309
Query: 338 TCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVR 397
TC V+ ++ EA ++ D++L
Sbjct: 310 TCTTVISACGREGILDEARRFFD---------------------------DLKL------ 336
Query: 398 VFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAG 457
NG A NS+L+ G E ILK ME+ + +++ AG
Sbjct: 337 ----NGYKPGTATYNSMLQVFGKAGVYTEALNILKEMEDNNCEPDAITYNELVAAYVRAG 392
Query: 458 KKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAI 517
DE +D M + G + ++I + AGD DKA + F +M E
Sbjct: 393 FHDEGAAVIDTMASKGVMPNAITYTTVINAYGKAGDADKALEVFGQMKEL---------- 442
Query: 518 DLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMK 577
CV P TY ++ L + +D + +LC MK
Sbjct: 443 ---------------------GCV------PNVCTYNNVLVLLGKRSRSEDMIKILCDMK 475
Query: 578 DHGFPP 583
+G PP
Sbjct: 476 LNGCPP 481
>gi|255660814|gb|ACU25576.1| pentatricopeptide repeat-containing protein [Junellia spathulata]
Length = 418
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 63/289 (21%), Positives = 113/289 (39%), Gaps = 5/289 (1%)
Query: 269 LVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMR 328
L++ VV + G + A +F E G + D ++ + + + + +
Sbjct: 35 LIQIVVSRKGKDSASA-VFAAILETRGTQRSDIYVFSGLITAYLESGFLRDAIECXRLTK 93
Query: 329 SKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLD 388
+ + +TC KVL + K YE ++ C S+ L+ K+ +
Sbjct: 94 EHKFRVPFDTCRKVLEHLMKLKYFKLVWGFYEESLECGYPASLYFFNILMHSFC--KEGE 151
Query: 389 MRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSK 448
+RL V + G + N+++ I +G + E ++ AM+ G S
Sbjct: 152 IRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLNEGFRLKNAMQASGVQPDVYTYSV 211
Query: 449 IAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKE 508
+ L K D+ANE D M +G + +LI GHC G +D A + +++M+ +
Sbjct: 212 LINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLS-Q 270
Query: 509 GTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELI 557
S + L+ C K A + + LKP TY LI
Sbjct: 271 SLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMK-GLKPDKITYTTLI 318
Score = 45.8 bits (107), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 42/185 (22%), Positives = 74/185 (40%), Gaps = 2/185 (1%)
Query: 401 ENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKD 460
+NG V +++ GR+ +I K M + + + L G
Sbjct: 234 DNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLK 293
Query: 461 EANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLL 520
+A + +D M G + +LI G C GDL+ A + ++K++ KE A L
Sbjct: 294 QAQDLIDEMSMKGLKPDKITYTTLIDGSCKEGDLETAFE-YRKIMIKENIRLDDVAYTAL 352
Query: 521 VNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHG 580
++ C + R++DA K + + LK TY +I + L+ M+ G
Sbjct: 353 ISGLCQEGRSVDAEKMLREML-SVGLKLEIGTYTMIINEFCKKGDVWTGSKLMKEMQRDG 411
Query: 581 FPPFV 585
+ P V
Sbjct: 412 YVPSV 416
>gi|255660792|gb|ACU25565.1| pentatricopeptide repeat-containing protein [Verbena bonariensis]
Length = 418
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 63/292 (21%), Positives = 113/292 (38%), Gaps = 5/292 (1%)
Query: 266 SNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLD 325
+ L++ VV + G A +F E G ++ D ++ + + + +
Sbjct: 32 AKTLIQIVVSRKGKGSASA-VFAAILETKGTLRSDIYVFSGLITAYLESGFLRDAIECYR 90
Query: 326 EMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSK 385
+ + + +TC KVL + K YE + C S+ L+ V K
Sbjct: 91 LTKEHKFRVPFDTCRKVLEHLMKLKYFKLVWGFYEENLECGYPASLYFFNILMHSFV--K 148
Query: 386 QLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNM 445
+ ++RL V + G + N+++ I +G + E ++ AM+ G
Sbjct: 149 EGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLNEGFRLKNAMQASGVQPDVYT 208
Query: 446 KSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMV 505
S + L K D+AN D M G + +LI GHC G +D A + +++M+
Sbjct: 209 YSVLINGLCKESKMDDANVLFDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQML 268
Query: 506 EKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELI 557
+ S + L+ C K A + + + LKP TY LI
Sbjct: 269 S-QSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMIMK-GLKPDKFTYTTLI 318
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 102/442 (23%), Positives = 174/442 (39%), Gaps = 52/442 (11%)
Query: 161 RLSSKTYNLMLRIVGVHGLVQEFWGLVD-VMKKKGYGVASHVRNKMTEKFEKEGLESDLE 219
R + ++Y M+ + H ++ E L+ V+ +KG G AS V + E K L SD+
Sbjct: 10 RHTLQSYCTMIHFLCTHQMLPEAKTLIQIVVSRKGKGSASAVFAAILET--KGTLRSDIY 67
Query: 220 KLKGIFA----TGSIDNSIEKVASRICKVVRSDIWGDDVERQLRDL-NVTFSNDLVKFVV 274
G+ +G + ++IE R+ K + + D + L L + + + F
Sbjct: 68 VFSGLITAYLESGFLRDAIE--CYRLTKEHKFRVPFDTCRKVLEHLMKLKYFKLVWGFYE 125
Query: 275 DKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEM 334
+ L +L FF S FVK E SV D I + W + + S +
Sbjct: 126 ENLECGYPASLYFFNILMHS-FVK--EGEIRLAQSVF---DAITK-WGLRPSVVS--FNT 176
Query: 335 EMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSK 394
M +K LG +E +K A+ A +P V + L+ + ++D
Sbjct: 177 LMNGYIK-LGDLNEGFRLKNAMQ------ASGVQPDVYTYSVLINGLCKESKMD------ 223
Query: 395 VVRVFRENGNVLTDAMLN-----------SVLKALISVGRMGECNKILKAMEEGGFIASS 443
+ NVL D ML+ +++ GR+ +I K M
Sbjct: 224 -------DANVLFDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDL 276
Query: 444 NMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQK 503
+ + + L G +A + +D M G + +LI G+C GDL+ A + ++
Sbjct: 277 ITYNTLIYGLCKKGDLKQAQDLIDEMIMKGLKPDKFTYTTLIDGNCKEGDLETAFEYRKR 336
Query: 504 MVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQ 563
M+ KE A L++ C + R++DA K + + LKP TY +I +
Sbjct: 337 MI-KENIRLDDVAYTALISGLCQEGRSVDAEKMLREML-SVGLKPEIGTYTMIINEFCKK 394
Query: 564 RGFKDALSLLCLMKDHGFPPFV 585
LL M+ G+ P V
Sbjct: 395 GDVWTGSKLLKEMQRDGYKPSV 416
>gi|296088471|emb|CBI37462.3| unnamed protein product [Vitis vinifera]
Length = 673
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 61/281 (21%), Positives = 123/281 (43%), Gaps = 26/281 (9%)
Query: 253 DVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLG 312
D+E+ L + V + DLV ++ K+ E K A FF WA H+ +YN M +L
Sbjct: 252 DMEKALDLVGVELTTDLVIEILGKIHFEEKMAFRFFMWAGHQDCYSHEPRAYNEMIDILS 311
Query: 313 REDCIDRFWKVLDEM-----RSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFA----M 363
+ ++++ +M R+ + +E + +L +++E+++ L++FA +
Sbjct: 312 STKYKVKQFRIVCDMLDYMKRNDKKSVPVEVLLMILRKYTEKHLAH----LHKFAKKKKI 367
Query: 364 ACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGR 423
K +P +N LL + + MR+ +++ E G+ N+ + + G
Sbjct: 368 RVKTQPEINALNLLLDALCKNPSRGMRVLEEMI----EMGHTPDSFTYNTAIDSFCKAGM 423
Query: 424 MGECNKILKAMEEGGFIASSNMKSKIA---FRLSSAGKKDEANEFMDHMEASGSDVGDKM 480
+ E ++ + M G SS A L + + +E + + M SG
Sbjct: 424 VTEATELFEFMRTKGSTMSSPTAKTYAIMILALVQSDRTEECFKLIKDMINSGVLPDVST 483
Query: 481 WVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLV 521
+ +I+G C+AG +++A ++M K GY D++
Sbjct: 484 YKQVIEGMCLAGKVEEAYKFLEEMGNK------GYRPDIVT 518
>gi|125527955|gb|EAY76069.1| hypothetical protein OsI_03997 [Oryza sativa Indica Group]
Length = 684
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/234 (20%), Positives = 99/234 (42%), Gaps = 9/234 (3%)
Query: 412 NSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEA 471
N+ L+ LI+ + E +++ G + +K+ L G+ +A + E
Sbjct: 47 NARLRRLIARDDLAEAARLVDRATSRGEAPDVYLCTKLIRNLCRRGRTSDAARVLRAAER 106
Query: 472 SGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAI 531
SG+ V + +L+ G+C G LD A ++++ + Y ++ C + R
Sbjct: 107 SGTAVDVFAYNTLVAGYCRYGQLDAA----RRLIASMPVAPDAYTYTPIIRGLCDRGRVG 162
Query: 532 DACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFV---DPF 588
+A + + + +P TY L++ + GF A+ +L M+ G P + +
Sbjct: 163 EALSLLDDMLHR-GCQPSVVTYTVLLEAVCKSTGFGQAMEVLDEMRAKGCTPNIVTYNVI 221
Query: 589 IKYVSKSGTSDDAIAFLKGMTSKRF-PSMSVVLCLFAAFFQARRHSEAQDLLSK 641
I + + G DDA FL ++S F P + A+R + ++L ++
Sbjct: 222 INGMCREGRVDDAREFLNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEELFAE 275
Score = 55.5 bits (132), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 56/271 (20%), Positives = 115/271 (42%), Gaps = 10/271 (3%)
Query: 343 LGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFREN 402
L R R+ + EA L + A + P V CT L+R + ++ ++V+R +
Sbjct: 50 LRRLIARDDLAEAARLVDRATSRGEAPDVYLCTKLIRNL--CRRGRTSDAARVLRAAERS 107
Query: 403 GNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEA 462
G + N+++ G++ +++ +M + + I L G+ EA
Sbjct: 108 GTAVDVFAYNTLVAGYCRYGQLDAARRLIASMP---VAPDAYTYTPIIRGLCDRGRVGEA 164
Query: 463 NEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVN 522
+D M G + L++ C + +A + +M K G + ++++N
Sbjct: 165 LSLLDDMLHRGCQPSVVTYTVLLEAVCKSTGFGQAMEVLDEMRAK-GCTPNIVTYNVIIN 223
Query: 523 TYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLC-LMKDHGF 581
C + R DA +F+ N + Y +P +Y ++K L + ++D L +M+ +
Sbjct: 224 GMCREGRVDDAREFL-NRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEELFAEMMEKNCM 282
Query: 582 PPFV--DPFIKYVSKSGTSDDAIAFLKGMTS 610
P V D +++ + G + AI L+ M+
Sbjct: 283 PNEVTFDMLVRFFCRGGMVERAIQVLEQMSG 313
Score = 53.1 bits (126), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 76/372 (20%), Positives = 147/372 (39%), Gaps = 79/372 (21%)
Query: 310 VLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVL------GRFSERNMV-------KEAV 356
++ R+D + +++D S+G ++ C K++ GR S+ V AV
Sbjct: 53 LIARDD-LAEAARLVDRATSRGEAPDVYLCTKLIRNLCRRGRTSDAARVLRAAERSGTAV 111
Query: 357 DLYEFAMACKNKPSVNCCTF----LLRKIVVSKQL--DMRLFSKVVRVFRENGNV----- 405
D++ + N C + R+++ S + D ++ ++R + G V
Sbjct: 112 DVFAY-----NTLVAGYCRYGQLDAARRLIASMPVAPDAYTYTPIIRGLCDRGRVGEALS 166
Query: 406 LTDAMLNS-----------VLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLS 454
L D ML+ +L+A+ G+ ++L M G + + I +
Sbjct: 167 LLDDMLHRGCQPSVVTYTVLLEAVCKSTGFGQAMEVLDEMRAKGCTPNIVTYNVIINGMC 226
Query: 455 SAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEK------- 507
G+ D+A EF++ + + G + +++KG C A + + F +M+EK
Sbjct: 227 REGRVDDAREFLNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEELFAEMMEKNCMPNEV 286
Query: 508 ----------------------EGTSHAGYA-----IDLLVNTYCSKNRAIDACKFVHNC 540
E S G A ++++NT C + R DA +F++N
Sbjct: 287 TFDMLVRFFCRGGMVERAIQVLEQMSGHGCAANTTLCNIVINTICKQGRVDDAFQFLNN- 345
Query: 541 VREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPP---FVDPFIKYVSKSGT 597
+ Y P +Y ++K L ++DA LL M PP + FI + + G
Sbjct: 346 MGSYGCSPDTISYTTVLKGLCRAERWEDAKELLKEMVRKNCPPNEVTFNTFICILCQKGL 405
Query: 598 SDDAIAFLKGMT 609
+ A ++ M+
Sbjct: 406 IEQATMLIEQMS 417
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 65/345 (18%), Positives = 135/345 (39%), Gaps = 47/345 (13%)
Query: 303 SYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFA 362
+Y + + + + +VLDEMR+KG + T ++ V +A +
Sbjct: 182 TYTVLLEAVCKSTGFGQAMEVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDAREFLNRL 241
Query: 363 MACKNKPSVNCCTFLLRKIVVSKQLD--MRLFSKVVRVFRENGNVLTDAMLNSVLKALIS 420
+ +P T +L+ + +K+ + LF++++ E + + + +++
Sbjct: 242 SSYGFQPDTVSYTTVLKGLCAAKRWEDVEELFAEMM----EKNCMPNEVTFDMLVRFFCR 297
Query: 421 VGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKM 480
G + ++L+ M G A++ + + + + G+ D+A +F+++M + G
Sbjct: 298 GGMVERAIQVLEQMSGHGCAANTTLCNIVINTICKQGRVDDAFQFLNNMGSYGCSPDTIS 357
Query: 481 WVSLIKGHCVAGDLDKAADCFQKMVEK-----------------------------EGTS 511
+ +++KG C A + A + ++MV K E S
Sbjct: 358 YTTVLKGLCRAERWEDAKELLKEMVRKNCPPNEVTFNTFICILCQKGLIEQATMLIEQMS 417
Query: 512 HAGYAIDL-----LVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGF 566
G +++ LVN +C + R A + ++ KP TY L+ L
Sbjct: 418 EHGCEVNIVTYNALVNGFCVQGRVDSALELFYS----MPCKPNTITYTTLLTGLCNAERL 473
Query: 567 KDALSLLCLMKDHGFPPFVDPF---IKYVSKSGTSDDAIAFLKGM 608
A LL M P V F + + + G D+AI ++ M
Sbjct: 474 DAAAELLAEMLQKDCAPNVVTFNVLVSFFCQKGLMDEAIELVEQM 518
>gi|115440343|ref|NP_001044451.1| Os01g0783100 [Oryza sativa Japonica Group]
gi|20804869|dbj|BAB92551.1| putative PPR protein [Oryza sativa Japonica Group]
gi|113533982|dbj|BAF06365.1| Os01g0783100 [Oryza sativa Japonica Group]
Length = 684
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/234 (20%), Positives = 99/234 (42%), Gaps = 9/234 (3%)
Query: 412 NSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEA 471
N+ L+ LI+ + E +++ G + +K+ L G+ +A + E
Sbjct: 47 NARLRRLIARDDLAEAARLVDRATSRGEAPDVYLCTKLIRNLCRRGRTSDAARVLRAAER 106
Query: 472 SGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAI 531
SG+ V + +L+ G+C G LD A ++++ + Y ++ C + R
Sbjct: 107 SGTAVDVFAYNTLVAGYCRYGQLDAA----RRLIASMPVAPDAYTYTPIIRGLCDRGRVG 162
Query: 532 DACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFV---DPF 588
+A + + + +P TY L++ + GF A+ +L M+ G P + +
Sbjct: 163 EALSLLDDMLHR-GCQPSVVTYTVLLEAVCKSTGFGQAMEVLDEMRAKGCTPNIVTYNVI 221
Query: 589 IKYVSKSGTSDDAIAFLKGMTSKRF-PSMSVVLCLFAAFFQARRHSEAQDLLSK 641
I + + G DDA FL ++S F P + A+R + ++L ++
Sbjct: 222 INGMCREGRVDDAREFLNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEELFAE 275
Score = 55.5 bits (132), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 56/271 (20%), Positives = 115/271 (42%), Gaps = 10/271 (3%)
Query: 343 LGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFREN 402
L R R+ + EA L + A + P V CT L+R + ++ ++V+R +
Sbjct: 50 LRRLIARDDLAEAARLVDRATSRGEAPDVYLCTKLIRNL--CRRGRTSDAARVLRAAERS 107
Query: 403 GNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEA 462
G + N+++ G++ +++ +M + + I L G+ EA
Sbjct: 108 GTAVDVFAYNTLVAGYCRYGQLDAARRLIASMP---VAPDAYTYTPIIRGLCDRGRVGEA 164
Query: 463 NEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVN 522
+D M G + L++ C + +A + +M K G + ++++N
Sbjct: 165 LSLLDDMLHRGCQPSVVTYTVLLEAVCKSTGFGQAMEVLDEMRAK-GCTPNIVTYNVIIN 223
Query: 523 TYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLC-LMKDHGF 581
C + R DA +F+ N + Y +P +Y ++K L + ++D L +M+ +
Sbjct: 224 GMCREGRVDDAREFL-NRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEELFAEMMEKNCM 282
Query: 582 PPFV--DPFIKYVSKSGTSDDAIAFLKGMTS 610
P V D +++ + G + AI L+ M+
Sbjct: 283 PNEVTFDMLVRFFCRGGMVERAIQVLEQMSG 313
Score = 53.1 bits (126), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 76/372 (20%), Positives = 147/372 (39%), Gaps = 79/372 (21%)
Query: 310 VLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVL------GRFSERNMV-------KEAV 356
++ R+D + +++D S+G ++ C K++ GR S+ V AV
Sbjct: 53 LIARDD-LAEAARLVDRATSRGEAPDVYLCTKLIRNLCRRGRTSDAARVLRAAERSGTAV 111
Query: 357 DLYEFAMACKNKPSVNCCTF----LLRKIVVSKQL--DMRLFSKVVRVFRENGNV----- 405
D++ + N C + R+++ S + D ++ ++R + G V
Sbjct: 112 DVFAY-----NTLVAGYCRYGQLDAARRLIASMPVAPDAYTYTPIIRGLCDRGRVGEALS 166
Query: 406 LTDAMLNS-----------VLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLS 454
L D ML+ +L+A+ G+ ++L M G + + I +
Sbjct: 167 LLDDMLHRGCQPSVVTYTVLLEAVCKSTGFGQAMEVLDEMRAKGCTPNIVTYNVIINGMC 226
Query: 455 SAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEK------- 507
G+ D+A EF++ + + G + +++KG C A + + F +M+EK
Sbjct: 227 REGRVDDAREFLNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEELFAEMMEKNCMPNEV 286
Query: 508 ----------------------EGTSHAGYA-----IDLLVNTYCSKNRAIDACKFVHNC 540
E S G A ++++NT C + R DA +F++N
Sbjct: 287 TFDMLVRFFCRGGMVERAIQVLEQMSGHGCAANTTLCNIVINTICKQGRVDDAFQFLNN- 345
Query: 541 VREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPP---FVDPFIKYVSKSGT 597
+ Y P +Y ++K L ++DA LL M PP + FI + + G
Sbjct: 346 MGSYGCSPDTISYTTVLKGLCRAERWEDAKELLKEMVRKNCPPNEVTFNTFICILCQKGL 405
Query: 598 SDDAIAFLKGMT 609
+ A ++ M+
Sbjct: 406 IEQATMLIEQMS 417
Score = 50.1 bits (118), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 65/345 (18%), Positives = 135/345 (39%), Gaps = 47/345 (13%)
Query: 303 SYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFA 362
+Y + + + + +VLDEMR+KG + T ++ V +A +
Sbjct: 182 TYTVLLEAVCKSTGFGQAMEVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDAREFLNRL 241
Query: 363 MACKNKPSVNCCTFLLRKIVVSKQLD--MRLFSKVVRVFRENGNVLTDAMLNSVLKALIS 420
+ +P T +L+ + +K+ + LF++++ E + + + +++
Sbjct: 242 SSYGFQPDTVSYTTVLKGLCAAKRWEDVEELFAEMM----EKNCMPNEVTFDMLVRFFCR 297
Query: 421 VGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKM 480
G + ++L+ M G A++ + + + + G+ D+A +F+++M + G
Sbjct: 298 GGMVERAIQVLEQMSGHGCAANTTLCNIVINTICKQGRVDDAFQFLNNMGSYGCSPDTIS 357
Query: 481 WVSLIKGHCVAGDLDKAADCFQKMVEK-----------------------------EGTS 511
+ +++KG C A + A + ++MV K E S
Sbjct: 358 YTTVLKGLCRAERWEDAKELLKEMVRKNCPPNEVTFNTFICILCQKGLIEQATMLIEQMS 417
Query: 512 HAGYAIDL-----LVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGF 566
G +++ LVN +C + R A + ++ KP TY L+ L
Sbjct: 418 EHGCEVNIVTYNALVNGFCVQGRVDSALELFYS----MPCKPNTITYTTLLTGLCNAERL 473
Query: 567 KDALSLLCLMKDHGFPPFVDPF---IKYVSKSGTSDDAIAFLKGM 608
A LL M P V F + + + G D+AI ++ M
Sbjct: 474 DAAAELLAEMLQKDCAPNVVTFNVLVSFFCQKGLMDEAIELVEQM 518
>gi|302806475|ref|XP_002984987.1| hypothetical protein SELMODRAFT_20977 [Selaginella moellendorffii]
gi|300147197|gb|EFJ13862.1| hypothetical protein SELMODRAFT_20977 [Selaginella moellendorffii]
Length = 471
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 78/364 (21%), Positives = 150/364 (41%), Gaps = 14/364 (3%)
Query: 303 SYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFA 362
+Y A+ + R ++ K+L+EMR +G + T ++ + +MV A D+ +
Sbjct: 59 TYTALIAAFARAKKLEEAMKLLEEMRERGCPPNLVTYNVLVDALCKLSMVGAAQDVVKKM 118
Query: 363 MACKNKPSVNCCTFLLRKIVVSKQL-DMRLFSKVVRVFRENGNVLTDAMLNSVLKALISV 421
+ P+V L+ + D R ++ NV+T ++++ L
Sbjct: 119 IEGGFAPNVMTFNSLVDGFCKRGNVDDARKLLGIMVAKGMRPNVVT---YSALIDGLCKS 175
Query: 422 GRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMW 481
+ E ++L+ M+ G + S + L A K +EA + + M SG ++
Sbjct: 176 QKFLEAKEVLEEMKASGVTPDAFTYSALIHGLCKADKIEEAEQMLRRMAGSGCTPDVVVY 235
Query: 482 VSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCV 541
S+I C +G L +A Q+M K+ S + +++ C + +A +
Sbjct: 236 SSIIHAFCKSGKLLEAQKTLQEM-RKQRKSPDVVTYNTVIDGLCKLGKIAEAQVILDQMQ 294
Query: 542 REYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPF---IKYVSKSGTS 598
D+ P TY +I L +A LL M G P V + I + K G
Sbjct: 295 ESGDVLPDVVTYSTVINGLCKSDMLVEAQKLLDRMCKAGCNPDVVTYTTIIDGLCKCGRL 354
Query: 599 DDAIAFLKGMT-SKRFPSMSVVLCLFAAFFQARRHSEAQDLLSK-----CPRYVRNHADV 652
++A L+GM + P++ L + +AR+ EA+ ++ + CP + + +
Sbjct: 355 EEAEYLLQGMKRAGCAPNVVTYTTLISGLCKARKVDEAERVMEEMRNAGCPPNLVTYNTM 414
Query: 653 LNLL 656
+N L
Sbjct: 415 VNGL 418
Score = 56.6 bits (135), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 64/278 (23%), Positives = 122/278 (43%), Gaps = 7/278 (2%)
Query: 303 SYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFA 362
+Y+A+ L + +VL+EM++ G + T ++ + + ++EA +
Sbjct: 164 TYSALIDGLCKSQKFLEAKEVLEEMKASGVTPDAFTYSALIHGLCKADKIEEAEQMLRRM 223
Query: 363 MACKNKPSVNCCTFLLRKIVVS-KQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISV 421
P V + ++ S K L+ + + +R R++ +V+T N+V+ L +
Sbjct: 224 AGSGCTPDVVVYSSIIHAFCKSGKLLEAQKTLQEMRKQRKSPDVVT---YNTVIDGLCKL 280
Query: 422 GRMGECNKILKAMEEGGFIASSNMK-SKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKM 480
G++ E IL M+E G + + S + L + EA + +D M +G +
Sbjct: 281 GKIAEAQVILDQMQESGDVLPDVVTYSTVINGLCKSDMLVEAQKLLDRMCKAGCNPDVVT 340
Query: 481 WVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNC 540
+ ++I G C G L++A Q M ++ G + L++ C K R +D + V
Sbjct: 341 YTTIIDGLCKCGRLEEAEYLLQGM-KRAGCAPNVVTYTTLISGLC-KARKVDEAERVMEE 398
Query: 541 VREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKD 578
+R P TY ++ L V K+A L+ MKD
Sbjct: 399 MRNAGCPPNLVTYNTMVNGLCVSGRIKEAQQLVQRMKD 436
Score = 45.1 bits (105), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 71/346 (20%), Positives = 141/346 (40%), Gaps = 12/346 (3%)
Query: 166 TYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRNKMTEKFEKEGLESDLEKLKGIF 225
TYN+++ + +V +V M + G+ N + + F K G D KL GI
Sbjct: 94 TYNVLVDALCKLSMVGAAQDVVKKMIEGGFAPNVMTFNSLVDGFCKRGNVDDARKLLGIM 153
Query: 226 ATGSIDNSIEKVASRICKVVRSD--IWGDDVERQLRDLNVTFSNDLVKFVVDKL--GDEP 281
+ ++ ++ I + +S + +V +++ VT ++ L D+
Sbjct: 154 VAKGMRPNVVTYSALIDGLCKSQKFLEAKEVLEEMKASGVTPDAFTYSALIHGLCKADKI 213
Query: 282 KKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVK 341
++A R SG D Y+++ + + K L EMR + ++ T
Sbjct: 214 EEAEQMLRRMAGSGCTP-DVVVYSSIIHAFCKSGKLLEAQKTLQEMRKQRKSPDVVTYNT 272
Query: 342 VLGRFSERNMVKEA-VDLYEFAMACKNKPSVNCCTFLLRKIVVSKQL--DMRLFSKVVRV 398
V+ + + EA V L + + P V + ++ + S L +L ++ +
Sbjct: 273 VIDGLCKLGKIAEAQVILDQMQESGDVLPDVVTYSTVINGLCKSDMLVEAQKLLDRMCKA 332
Query: 399 FRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGK 458
N +V+T +++ L GR+ E +L+ M+ G + + + L A K
Sbjct: 333 GC-NPDVVT---YTTIIDGLCKCGRLEEAEYLLQGMKRAGCAPNVVTYTTLISGLCKARK 388
Query: 459 KDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKM 504
DEA M+ M +G + +++ G CV+G + +A Q+M
Sbjct: 389 VDEAERVMEEMRNAGCPPNLVTYNTMVNGLCVSGRIKEAQQLVQRM 434
Score = 43.5 bits (101), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 65/266 (24%), Positives = 106/266 (39%), Gaps = 47/266 (17%)
Query: 429 KILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGH 488
++L+ M+ GF + + I +++AG D A MDH+ + G D + +LI
Sbjct: 11 ELLEEMKSAGFAPDAFTHTPIITAMANAGDLDGA---MDHLRSMGCDPNVVTYTALIAAF 67
Query: 489 CVAGDLDKAADCFQKMVEKEGT----------------SHAGYAIDL------------- 519
A L++A ++M E+ S G A D+
Sbjct: 68 ARAKKLEEAMKLLEEMRERGCPPNLVTYNVLVDALCKLSMVGAAQDVVKKMIEGGFAPNV 127
Query: 520 -----LVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLC 574
LV+ +C + DA K + V + ++P TY LI L + F +A +L
Sbjct: 128 MTFNSLVDGFCKRGNVDDARKLLGIMVAK-GMRPNVVTYSALIDGLCKSQKFLEAKEVLE 186
Query: 575 LMKDHGFPPFVDPF-----IKYVSKSGTSDDAIAFLKGMT-SKRFPSMSVVLCLFAAFFQ 628
MK G P D F I + K+ ++A L+ M S P + V + AF +
Sbjct: 187 EMKASGVTP--DAFTYSALIHGLCKADKIEEAEQMLRRMAGSGCTPDVVVYSSIIHAFCK 244
Query: 629 ARRHSEAQDLLSKCPRYVRNHADVLN 654
+ + EAQ L + R R DV+
Sbjct: 245 SGKLLEAQKTLQE-MRKQRKSPDVVT 269
Score = 43.5 bits (101), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 46/213 (21%), Positives = 94/213 (44%), Gaps = 6/213 (2%)
Query: 321 WKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRK 380
++L+EM+S G+ + T ++ + + A+D + +M C P+V T L+
Sbjct: 10 LELLEEMKSAGFAPDAFTHTPIITAMANAGDLDGAMD-HLRSMGCD--PNVVTYTALIAA 66
Query: 381 IVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFI 440
+K+L+ + K++ RE G N ++ AL + +G ++K M EGGF
Sbjct: 67 FARAKKLEEAM--KLLEEMRERGCPPNLVTYNVLVDALCKLSMVGAAQDVVKKMIEGGFA 124
Query: 441 ASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADC 500
+ + + G D+A + + M A G + +LI G C + +A +
Sbjct: 125 PNVMTFNSLVDGFCKRGNVDDARKLLGIMVAKGMRPNVVTYSALIDGLCKSQKFLEAKEV 184
Query: 501 FQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDA 533
++M + G + + L++ C ++ +A
Sbjct: 185 LEEM-KASGVTPDAFTYSALIHGLCKADKIEEA 216
Score = 42.4 bits (98), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 73/344 (21%), Positives = 131/344 (38%), Gaps = 9/344 (2%)
Query: 303 SYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFA 362
+YN + L + + V+ +M G+ + T ++ F +R V +A L
Sbjct: 94 TYNVLVDALCKLSMVGAAQDVVKKMIEGGFAPNVMTFNSLVDGFCKRGNVDDARKLLGIM 153
Query: 363 MACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVL-KALISV 421
+A +P+V + L+ + S++ L +K V + V DA S L L
Sbjct: 154 VAKGMRPNVVTYSALIDGLCKSQKF---LEAKEVLEEMKASGVTPDAFTYSALIHGLCKA 210
Query: 422 GRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMW 481
++ E ++L+ M G + S I +GK EA + + M +
Sbjct: 211 DKIEEAEQMLRRMAGSGCTPDVVVYSSIIHAFCKSGKLLEAQKTLQEMRKQRKSPDVVTY 270
Query: 482 VSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCV 541
++I G C G + +A +M E ++N C + ++A K +
Sbjct: 271 NTVIDGLCKLGKIAEAQVILDQMQESGDVLPDVVTYSTVINGLCKSDMLVEAQKLLDRMC 330
Query: 542 REYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPFIKYVS---KSGTS 598
+ P TY +I L ++A LL MK G P V + +S K+
Sbjct: 331 KA-GCNPDVVTYTTIIDGLCKCGRLEEAEYLLQGMKRAGCAPNVVTYTTLISGLCKARKV 389
Query: 599 DDAIAFLKGMTSKRFPSMSVVL-CLFAAFFQARRHSEAQDLLSK 641
D+A ++ M + P V + + R EAQ L+ +
Sbjct: 390 DEAERVMEEMRNAGCPPNLVTYNTMVNGLCVSGRIKEAQQLVQR 433
>gi|297607630|ref|NP_001060305.2| Os07g0621100 [Oryza sativa Japonica Group]
gi|255677977|dbj|BAF22219.2| Os07g0621100 [Oryza sativa Japonica Group]
Length = 734
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 83/350 (23%), Positives = 141/350 (40%), Gaps = 19/350 (5%)
Query: 286 IFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGR 345
+F +E+ ++ D Y + L + + V+D M +G E + T ++
Sbjct: 207 VFVEMSEKG--IEPDVVMYTGLIDSLCKVGKAKKAHGVMDMMVRRGLEPNVVTYNVLINC 264
Query: 346 FSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLD--MRLFSKVVR---VFR 400
+ VKEA+ + + P V L++ + ++D M L ++VR + +
Sbjct: 265 MCKEGSVKEAIGVLKKMSEKGVAPDVVTYNTLIKGLSDVLEMDEAMWLLEEMVRGKNIVK 324
Query: 401 ENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKD 460
N V+T NSV++ L +GRM + ++ MEE G + + + + L K
Sbjct: 325 PN--VVT---FNSVIQGLCDIGRMRQAFQVRAMMEETGCMVNLVTYNLLIGGLLRVHKVR 379
Query: 461 EANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLL 520
+A E MD M + G + + LIKG C +D+A D M ++ + I LL
Sbjct: 380 KAMELMDEMTSLGLEPDSFTYSILIKGFCKMWQVDRAEDLLSTMRDRGIEPELFHYIPLL 439
Query: 521 VNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHG 580
V C + A + + L Y +I K A LL + D G
Sbjct: 440 V-AMCEQGMMERARNLFNEMDNNFPLDV--VAYSTMIHGACKAGDLKTAKELLKSIVDEG 496
Query: 581 FPPFVDPF---IKYVSKSGTSDDAIAFLKGMTSKRF-PSMSVVLCLFAAF 626
P + I +KSG + A LK MT+ F P ++V L +
Sbjct: 497 LTPDAVTYSIVINMFAKSGDMEAANGVLKQMTASGFLPDVAVFDSLIQGY 546
Score = 52.4 bits (124), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 81/183 (44%), Gaps = 5/183 (2%)
Query: 430 ILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHC 489
+L++M G A + L A + D+A E M M SG + ++ SL++G+C
Sbjct: 137 LLRSMRSAGVRADVVTYGTLIRGLCDAAEVDKAVELMGEMCESGIEPNVVVYSSLLQGYC 196
Query: 490 VAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPW 549
+G + F +M EK G L+++ C +A A + VR L+P
Sbjct: 197 KSGRWEDVGKVFVEMSEK-GIEPDVVMYTGLIDSLCKVGKAKKAHGVMDMMVRR-GLEPN 254
Query: 550 HTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFV---DPFIKYVSKSGTSDDAIAFLK 606
TY LI + + K+A+ +L M + G P V + IK +S D+A+ L+
Sbjct: 255 VVTYNVLINCMCKEGSVKEAIGVLKKMSEKGVAPDVVTYNTLIKGLSDVLEMDEAMWLLE 314
Query: 607 GMT 609
M
Sbjct: 315 EMV 317
>gi|115470153|ref|NP_001058675.1| Os07g0101200 [Oryza sativa Japonica Group]
gi|50508922|dbj|BAD31827.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
gi|113610211|dbj|BAF20589.1| Os07g0101200 [Oryza sativa Japonica Group]
Length = 738
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 86/370 (23%), Positives = 153/370 (41%), Gaps = 17/370 (4%)
Query: 166 TYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVR-NKMTEKFEKEGLESD-LEKLKG 223
TYN+ +R + G + E LVD M+ Y V V N + K+ + + + L+
Sbjct: 226 TYNIWIRGLCEAGRLPEAVRLVDGMR--AYAVPDVVTYNTLIRGLCKKSMPQEAMHYLRR 283
Query: 224 IFATGSI--DNSIEKVASRICKVV----RSDIWGDDVERQLRDLNVTFSNDLVKFVVDKL 277
+ G + D + + CK+ +++ D V + VT+ + + +
Sbjct: 284 MMNQGCLPDDFTYNTIIDGYCKISMVQEATELLKDAVFKGFVPDQVTYCSLINGLCAE-- 341
Query: 278 GDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEME 337
GD ++AL F A+ G +K D YN++ L + I +V++EM +G +++
Sbjct: 342 GDV-ERALELFNEAQAKG-IKPDIVVYNSLVKGLCLQGLILHALQVMNEMAEEGCHPDIQ 399
Query: 338 TCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVR 397
T V+ + + +A + A+ P V L+ +LD L ++V
Sbjct: 400 TYNIVINGLCKMGNISDATVVMNDAIMKGYLPDVFTFNTLIDGYCKRLKLDSAL--QLVE 457
Query: 398 VFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAG 457
E G NSVL L G++ E N+ + M G + + + +
Sbjct: 458 RMWEYGIAPDTITYNSVLNGLCKAGKVNEVNETFQEMILKGCHPNPITYNILIENFCRSN 517
Query: 458 KKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAI 517
K +EA++ + M G + +LI G C GDL+ A FQK+ EK G S
Sbjct: 518 KMEEASKVIVKMSQEGLHPDAVSFNTLIYGFCRNGDLEGAYLLFQKLEEK-GYSATADTF 576
Query: 518 DLLVNTYCSK 527
+ L+ + K
Sbjct: 577 NTLIGAFSGK 586
Score = 43.1 bits (100), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 41/188 (21%), Positives = 76/188 (40%), Gaps = 2/188 (1%)
Query: 396 VRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSS 455
+R G + D N+++ + + E ++LK GF+ + L +
Sbjct: 281 LRRMMNQGCLPDDFTYNTIIDGYCKISMVQEATELLKDAVFKGFVPDQVTYCSLINGLCA 340
Query: 456 AGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGY 515
G + A E + +A G ++ SL+KG C+ G + A +M E EG
Sbjct: 341 EGDVERALELFNEAQAKGIKPDIVVYNSLVKGLCLQGLILHALQVMNEMAE-EGCHPDIQ 399
Query: 516 AIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCL 575
++++N C DA +++ + + L P T+ LI + AL L+
Sbjct: 400 TYNIVINGLCKMGNISDATVVMNDAIMKGYL-PDVFTFNTLIDGYCKRLKLDSALQLVER 458
Query: 576 MKDHGFPP 583
M ++G P
Sbjct: 459 MWEYGIAP 466
>gi|115475796|ref|NP_001061494.1| Os08g0300700 [Oryza sativa Japonica Group]
gi|34015356|gb|AAQ56545.1| putative fertility restorer [Oryza sativa Japonica Group]
gi|34015369|gb|AAQ56557.1| putative fertility restorer [Oryza sativa Japonica Group]
gi|35215067|dbj|BAC92425.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|113623463|dbj|BAF23408.1| Os08g0300700 [Oryza sativa Japonica Group]
gi|215678779|dbj|BAG95216.1| unnamed protein product [Oryza sativa Japonica Group]
gi|258644436|dbj|BAI39696.1| putative fertility restorer [Oryza sativa Indica Group]
Length = 735
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 64/294 (21%), Positives = 130/294 (44%), Gaps = 12/294 (4%)
Query: 329 SKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLD 388
S G+E + ++ + ++ A+ ++E + P+V T L+ + S +++
Sbjct: 205 SNGFEPNIVVYNALIDGYCNAGEMEHALKVFEGMDGNRCSPNVRTYTELIHGLCKSGKVE 264
Query: 389 --MRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMK 446
M LFS++V E NV+T ++++ + G + ++L ME G + +
Sbjct: 265 RAMVLFSRMVEAGLEP-NVVT---YTALIQGQCNEGHLQCAFRLLHLMETNGLVPNDWTF 320
Query: 447 SKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVE 506
S + L K +EA F+ + G V + ++ SLI G C G +D A + QKM+
Sbjct: 321 SVLIDALCKREKVEEAQLFLGSLVKKGVKVNEVVYTSLIDGLCKTGKIDAADELMQKMI- 379
Query: 507 KEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGF 566
EG ++ L++ C + + A + + + E ++ TY +I L+ + G
Sbjct: 380 SEGFVPDAHSYSSLIDGLCRQKKLSQATLMLED-MMEKGIQASPVTYTIIIDELVREVGS 438
Query: 567 KDALSLLCLMKDHGFPPFV---DPFIKYVSKSGTSDDAIAFLKGMTSKR-FPSM 616
+ + M G P + F++ + G +DA + + M + FP++
Sbjct: 439 EGPKKIFDKMIATGINPDIVTYTVFVRSYCEEGRMEDAESMIVQMVDRGVFPNL 492
Score = 40.8 bits (94), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 42/196 (21%), Positives = 87/196 (44%), Gaps = 5/196 (2%)
Query: 391 LFSKVVRVF---RENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKS 447
+ + RVF G + T ++L L+ G + E + M +++ +
Sbjct: 122 MLTHACRVFVLMPLRGCLRTAFTYTALLHGLLGAGMVREAMAVFVGMRADSCAPDTHVYA 181
Query: 448 KIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEK 507
+ L AG+ +EA ++ ++G + ++ +LI G+C AG+++ A F+ M
Sbjct: 182 TMVHGLCEAGRTEEAEVLLEEAMSNGFEPNIVVYNALIDGYCNAGEMEHALKVFEGMDGN 241
Query: 508 EGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFK 567
+ + + L++ C K+ ++ + + + E L+P TY LI+ + +
Sbjct: 242 RCSPNVRTYTE-LIHGLC-KSGKVERAMVLFSRMVEAGLEPNVVTYTALIQGQCNEGHLQ 299
Query: 568 DALSLLCLMKDHGFPP 583
A LL LM+ +G P
Sbjct: 300 CAFRLLHLMETNGLVP 315
>gi|357521009|ref|XP_003630793.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355524815|gb|AET05269.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 584
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 67/305 (21%), Positives = 119/305 (39%), Gaps = 6/305 (1%)
Query: 281 PKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCV 340
P +A+ + G VK +E +YN + ++ ++ W V+ +M + G + ++ T
Sbjct: 164 PHEAMKLLEMMIQDGNVKPNERTYNILIQAWCTKNELEEAWNVMHKMVNSGMQPDIVTYN 223
Query: 341 KVLGRFSERNMVKEAVDLYEFAMACKNK--PSVNCCTFLLRKIVVSKQLDMRLFSKVVRV 398
+ F++ A L NK P+ C ++R K+ +M + +
Sbjct: 224 TLARAFAQNGETDNAERLILKMQQYNNKVKPNERTCGIIIRGYC--KEGNMTEALRFLYK 281
Query: 399 FRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGK 458
+E G + NS++K + + + L MEE G S I SS+G
Sbjct: 282 MKELGVHPNPVVFNSLIKGYLDITDTDGVEEALTLMEEFGIKPDVVTYSTIMNAWSSSGL 341
Query: 459 KDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAID 518
D E D M + + + + L KG+ AG DKA M K G
Sbjct: 342 MDNCEEIFDDMVKAEIEPDIQAYSILAKGYVRAGQPDKAEALLNSMT-KYGLQANVVIFT 400
Query: 519 LLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKD 578
+++ +C+ + +D ++ + E TYE LI + A LL M++
Sbjct: 401 TIISGWCAAGK-MDCALRLYEKMNEMGTPLNLKTYETLIWGYGEAKQPWKAEELLVTMEE 459
Query: 579 HGFPP 583
G P
Sbjct: 460 SGVAP 464
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 57/249 (22%), Positives = 100/249 (40%), Gaps = 13/249 (5%)
Query: 370 SVNCCTFLLRKIVVSKQLDMRLFSKVVRVFR---ENGNVLTDAMLNSVLKALISVGRMGE 426
S +C T + R ++S + + V +F E G+ T +++ AL + R
Sbjct: 37 SNSCQTVISRTKLMSTLIRKGKPHEAVTIFNSLTEEGHKPTIITYTTLVAALTRLKRFNS 96
Query: 427 CNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIK 486
+L +EE G S + + + S +GK EA + M+ G + +LIK
Sbjct: 97 IPSLLSKVEENGVKPDSILFNAMINAFSDSGKVHEAMKIFRKMKECGCKPTTSTFNTLIK 156
Query: 487 GHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDL 546
G + G +A + M++ ++L+ +C+KN +A +H V +
Sbjct: 157 GFGIVGRPHEAMKLLEMMIQDGNVKPNERTYNILIQAWCTKNELEEAWNVMHKMVNS-GM 215
Query: 547 KPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDP-------FIKYVSKSGTSD 599
+P TY L + Q G D L ++K + V P I+ K G
Sbjct: 216 QPDIVTYNTLAR-AFAQNGETDNAERL-ILKMQQYNNKVKPNERTCGIIIRGYCKEGNMT 273
Query: 600 DAIAFLKGM 608
+A+ FL M
Sbjct: 274 EALRFLYKM 282
Score = 48.1 bits (113), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 71/372 (19%), Positives = 132/372 (35%), Gaps = 45/372 (12%)
Query: 280 EPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETC 339
+P +A+ F E G K +Y + + L R + +L ++ G + +
Sbjct: 58 KPHEAVTIFNSLTEEGH-KPTIITYTTLVAALTRLKRFNSIPSLLSKVEENGVKPDSILF 116
Query: 340 VKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVF 399
++ FS+ V EA+ ++ C KP
Sbjct: 117 NAMINAFSDSGKVHEAMKIFRKMKECGCKP------------------------------ 146
Query: 400 RENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRL-SSAGK 458
T + N+++K VGR E K+L+ M + G + + I + + +
Sbjct: 147 -------TTSTFNTLIKGFGIVGRPHEAMKLLEMMIQDGNVKPNERTYNILIQAWCTKNE 199
Query: 459 KDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAG-YAI 517
+EA M M SG + +L + G+ D A KM +
Sbjct: 200 LEEAWNVMHKMVNSGMQPDIVTYNTLARAFAQNGETDNAERLILKMQQYNNKVKPNERTC 259
Query: 518 DLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMK 577
+++ YC + +A +F++ ++E + P + LIK L L LM+
Sbjct: 260 GIIIRGYCKEGNMTEALRFLYK-MKELGVHPNPVVFNSLIKGYLDITDTDGVEEALTLME 318
Query: 578 DHGFPPFVDPFIKYV---SKSGTSDDAIAFLKGMTSKRF-PSMSVVLCLFAAFFQARRHS 633
+ G P V + + S SG D+ M P + L + +A +
Sbjct: 319 EFGIKPDVVTYSTIMNAWSSSGLMDNCEEIFDDMVKAEIEPDIQAYSILAKGYVRAGQPD 378
Query: 634 EAQDLLSKCPRY 645
+A+ LL+ +Y
Sbjct: 379 KAEALLNSMTKY 390
>gi|302801478|ref|XP_002982495.1| hypothetical protein SELMODRAFT_116601 [Selaginella moellendorffii]
gi|300149594|gb|EFJ16248.1| hypothetical protein SELMODRAFT_116601 [Selaginella moellendorffii]
Length = 448
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 80/357 (22%), Positives = 148/357 (41%), Gaps = 23/357 (6%)
Query: 293 ESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMV 352
E G V D SYN + L + +D+ +L M +GY+ ++ TC ++ +F E V
Sbjct: 3 EDGVVP-DRDSYNLLVRGLTKLSSVDQARAMLSTMVGEGYDPDVVTCGLLVDKFCEMKRV 61
Query: 353 KEAVDLYEFAMACKNKPSVNCCTF--LLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAM 410
E +L++ + N +V + +L+ ++ S D K + +G++
Sbjct: 62 GEVCELFQELES--NGVAVGMLAYNAILKALMCSGDFDGGF--KFSDIAVGDGSLPHVLA 117
Query: 411 LNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHME 470
++L LI G+ E ++++ M + + I+ L + D+A + D M
Sbjct: 118 YKTMLDCLIKTGKTREASEVVGEMIKKSVPDGMTYTALISV-LCKHNRADDAMKVFDIMV 176
Query: 471 ASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKE-GTSHAGYAIDLLVNTYCSKNR 529
++ SL+ HC LD A F +M+++ G S + Y LL+ C+ R
Sbjct: 177 EKEIVPNLDVYTSLLAAHCRTRKLDGAYRLFVEMIQRGYGPSASTYG--LLLRCLCNGGR 234
Query: 530 AIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRG-------FKDALSLLCLMKDHGFP 582
+ A +H+ +R P TY LI + FK+ L + D G
Sbjct: 235 SYLAYD-IHSSMRSRGHVPDENTYASLIYGCCMAGRITEAKVLFKEVLEGEKALLDAG-- 291
Query: 583 PFVDPFIKYVSKSGTSDDAIAFLKGMTSKR-FPSMSVVLCLFAAFFQARRHSEAQDL 638
+ I+ + ++ ++A+ GM K P++ L FF+A +A L
Sbjct: 292 -IYNVLIEGLCRASKVEEALEVTAGMVDKGCIPTLQTYNALIMGFFKANEVDKALQL 347
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 52/231 (22%), Positives = 91/231 (39%), Gaps = 5/231 (2%)
Query: 412 NSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEA 471
S+L A ++ ++ M + G+ S++ + L + G+ A + M +
Sbjct: 188 TSLLAAHCRTRKLDGAYRLFVEMIQRGYGPSASTYGLLLRCLCNGGRSYLAYDIHSSMRS 247
Query: 472 SGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAI 531
G + + SLI G C+AG + +A F++++E E ++L+ C ++
Sbjct: 248 RGHVPDENTYASLIYGCCMAGRITEAKVLFKEVLEGEKALLDAGIYNVLIEGLCRASKVE 307
Query: 532 DACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPP---FVDPF 588
+A + V + P TY LI AL L +M++ GF P F
Sbjct: 308 EALEVTAGMV-DKGCIPTLQTYNALIMGFFKANEVDKALQLFRVMEEKGFSPNTMIYSTF 366
Query: 589 IKYVSKSGTSDDAIAFLKGMTSKR-FPSMSVVLCLFAAFFQARRHSEAQDL 638
I + K G ++A F + + P L F A R EA L
Sbjct: 367 IDGLCKVGKINEAHEFFQQSVERGCVPDNVTYNALIRGLFGANRMDEAHRL 417
>gi|302821471|ref|XP_002992398.1| hypothetical protein SELMODRAFT_135281 [Selaginella moellendorffii]
gi|300139814|gb|EFJ06548.1| hypothetical protein SELMODRAFT_135281 [Selaginella moellendorffii]
Length = 698
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 77/373 (20%), Positives = 152/373 (40%), Gaps = 11/373 (2%)
Query: 267 NDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDE 326
NDL+ F + +P + + F + SG V D SY ++ LG+ +L+E
Sbjct: 251 NDLI-FACGQ-AHKPNEGMFFLEKLQASGLVA-DRDSYISLMLSLGKHGRTAEAEALLEE 307
Query: 327 MRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQ 386
M+ G ++ +LG +S + +++ +D + + S+N T+ L ++
Sbjct: 308 MKWYGLRPNLKAYNTLLGGYSRKGQLQQ-IDTVK-TLLRDTGMSINKITYCLLIDAYARA 365
Query: 387 LDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMK 446
M + + R+ M ++ G+ + K+L+ M++ G +++
Sbjct: 366 GLMDRLEALYQEMRDCDIRPNTYMYARMITIYRDTGQWQKGVKLLREMQQAGVTPDAHVY 425
Query: 447 SKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVE 506
+ I + ++A M+ G + W SLI C AG +A + KMV
Sbjct: 426 NVIINTFGRTRQLEQARIAFFKMQDGGIEPDVVSWNSLIDACCKAGQPLEARKLYYKMV- 484
Query: 507 KEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGF 566
+G + +++++ R D + V +R + P TY L+ R F
Sbjct: 485 NDGCAPTAQTFNIVIHGLGEHKRWNDVNEMVEE-MRSKGMFPNVVTYTTLVDVYAQARLF 543
Query: 567 KDALSLLCLMKDHGFPPFVDPF---IKYVSKSGTSDDAIAFLKGMTSKRFP-SMSVVLCL 622
+DA+ L MK+ G P + ++ G + + L+ M + +++++ L
Sbjct: 544 QDAVECLQTMKEDGMGPSPTAYSALANAYAQLGMCEQTLHVLQTMEKENIEINLAMLNLL 603
Query: 623 FAAFFQARRHSEA 635
AF A R EA
Sbjct: 604 INAFSMAGRSQEA 616
Score = 41.6 bits (96), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 79/382 (20%), Positives = 152/382 (39%), Gaps = 22/382 (5%)
Query: 161 RLSSKTYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRNKMTEKFEKEGLESDLEK 220
R + K YN +L G +Q+ + +++ G + + + + + GL LE
Sbjct: 314 RPNLKAYNTLLGGYSRKGQLQQIDTVKTLLRDTGMSINKITYCLLIDAYARAGLMDRLEA 373
Query: 221 LKGIFATGSIDNSIEKVASRICKVVRSDIWGDDVE--RQLRDLNVTFSNDLVKFVVDKLG 278
L I + A I + W V+ R+++ VT + +++ G
Sbjct: 374 LYQEMRDCDIRPNTYMYARMITIYRDTGQWQKGVKLLREMQQAGVTPDAHVYNVIINTFG 433
Query: 279 D--EPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEM 336
+ ++A I F + + G ++ D S+N++ + K+ +M + G
Sbjct: 434 RTRQLEQARIAF-FKMQDGGIEPDVVSWNSLIDACCKAGQPLEARKLYYKMVNDGCAPTA 492
Query: 337 ET---CVKVLGRFSERNMVKEAVDLYEFAMACKNK-PSVNCCTFLLRKIVVSKQLDMRLF 392
+T + LG N V E V+ M K P+V T L V RLF
Sbjct: 493 QTFNIVIHGLGEHKRWNDVNEMVE----EMRSKGMFPNVVTYTTL-----VDVYAQARLF 543
Query: 393 SKVV---RVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKI 449
V + +E+G + +++ A +G + +L+ ME+ + M + +
Sbjct: 544 QDAVECLQTMKEDGMGPSPTAYSALANAYAQLGMCEQTLHVLQTMEKENIEINLAMLNLL 603
Query: 450 AFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEG 509
S AG+ EA ++++ +G + +L+K A LD+ + F +M+ K G
Sbjct: 604 INAFSMAGRSQEAFAVFEYIKEAGLTADKITYTTLMKALIRAEKLDEVSGVFDEMI-KAG 662
Query: 510 TSHAGYAIDLLVNTYCSKNRAI 531
G A D+L + + K R +
Sbjct: 663 CRPDGKAKDMLRSAFRFKEREL 684
>gi|334186267|ref|NP_192012.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|223635642|sp|Q9SV26.2|PP297_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At4g01030, mitochondrial; Flags: Precursor
gi|332656570|gb|AEE81970.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 768
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 78/340 (22%), Positives = 136/340 (40%), Gaps = 35/340 (10%)
Query: 302 SSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEF 361
SS+N++ S + +D +LDEM G + ++ T +L ++ + + K+A+ + +
Sbjct: 156 SSWNSILSSYTKLGYVDDAIGLLDEMEICGLKPDIVTWNSLLSGYASKGLSKDAIAVLKR 215
Query: 362 AMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKAL-IS 420
KPS + + LL+ + L + K + + + D + + L + I
Sbjct: 216 MQIAGLKPSTSSISSLLQAVAEPGHLKL---GKAIHGYILRNQLWYDVYVETTLIDMYIK 272
Query: 421 VGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKM 480
G + + M+ +A +++ S +++ A +A M ME G
Sbjct: 273 TGYLPYARMVFDMMDAKNIVAWNSLVSGLSY----ACLLKDAEALMIRMEKEGIKPDAIT 328
Query: 481 WVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLL----VNTYCSKNRAIDACKF 536
W SL G+ G +KA D KM EK G A +++ + + CSKN
Sbjct: 329 WNSLASGYATLGKPEKALDVIGKMKEK------GVAPNVVSWTAIFSGCSKNGNFRNALK 382
Query: 537 VHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKD-HGF---------PPFVD 586
V ++E + P T L+K L LSLL K+ HGF
Sbjct: 383 VFIKMQEEGVGPNAATMSTLLKIL-------GCLSLLHSGKEVHGFCLRKNLICDAYVAT 435
Query: 587 PFIKYVSKSGTSDDAIAFLKGMTSKRFPSMSVVLCLFAAF 626
+ KSG AI G+ +K S + +L +A F
Sbjct: 436 ALVDMYGKSGDLQSAIEIFWGIKNKSLASWNCMLMGYAMF 475
>gi|21686921|gb|AAK71569.2|AC087852_29 putative reverse transcriptase [Oryza sativa Japonica Group]
Length = 1833
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 82/396 (20%), Positives = 152/396 (38%), Gaps = 55/396 (13%)
Query: 262 NVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFW 321
+V + LV ++ + ++ A FF W G H SY+ M +LG+ D W
Sbjct: 1406 SVRVTGCLVDKILTRFSNDWVAAFGFFMWVGTQGGYCHCADSYDLMVDILGKFKQFDLMW 1465
Query: 322 KVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYE----FAMACKNKPSVNCCTFL 377
++++M G M + T KV+ R + + EA+D + F + K+ ++N
Sbjct: 1466 GLINQMVEVGGLMSLMTMTKVMRRLAGASRWTEAIDAFHKMDRFGVV-KDTKAMN----- 1519
Query: 378 LRKIVVSKQLDMRLFSKVVRVFRE-NGNVLTDA-MLNSVLKALISVGRMGECNKILKAME 435
+++ R + VF+E G + D N+++ + E ++ M+
Sbjct: 1520 ---VLLDTLCKERSVKRARGVFQELRGTIPPDENSFNTLVHGWCKARMLKEALDTMEEMK 1576
Query: 436 EGGFIAS------------------------SNMKSK-----------IAFRLSSAGKKD 460
+ GF S M+ + + L AG+
Sbjct: 1577 QHGFSPSVVTYTSLVEAYCMEKDFQTVYALLDEMRKRRCPPNVVTYTILMHALGKAGRTR 1636
Query: 461 EANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLL 520
EA + D ++ G + SLI AG L+ A ++M G + + L
Sbjct: 1637 EALDTFDKLKEDGVAPDASFYNSLIYILGRAGRLEDAYSVVEEM-RTTGIAPNVTTFNTL 1695
Query: 521 VNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHG 580
++ C ++A +A K + + E P TY L+K ++ K L L+C M
Sbjct: 1696 ISAACDHSQAENALKLLVK-MEEQSCNPDIKTYTPLLKLCCKRQWVKILLFLVCHMFRKD 1754
Query: 581 FPPFVDPF---IKYVSKSGTSDDAIAFLKGMTSKRF 613
P + + ++ ++G + FL+ M SK F
Sbjct: 1755 ISPDFSTYTLLVSWLCRNGKVAQSCLFLEEMVSKGF 1790
Score = 46.2 bits (108), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 65/155 (41%), Gaps = 7/155 (4%)
Query: 491 AGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWH 550
A +A D F KM ++ G A+++L++T C K R++ + V +R + P
Sbjct: 1493 ASRWTEAIDAFHKM-DRFGVVKDTKAMNVLLDTLC-KERSVKRARGVFQELRG-TIPPDE 1549
Query: 551 TTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPFIKYVSKSGTSDD---AIAFLKG 607
++ L+ R K+AL + MK HGF P V + V D A L
Sbjct: 1550 NSFNTLVHGWCKARMLKEALDTMEEMKQHGFSPSVVTYTSLVEAYCMEKDFQTVYALLDE 1609
Query: 608 MTSKRFPSMSVVLC-LFAAFFQARRHSEAQDLLSK 641
M +R P V L A +A R EA D K
Sbjct: 1610 MRKRRCPPNVVTYTILMHALGKAGRTREALDTFDK 1644
>gi|357517409|ref|XP_003628993.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355523015|gb|AET03469.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 819
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 76/328 (23%), Positives = 144/328 (43%), Gaps = 19/328 (5%)
Query: 251 GDDVERQLRDLNVTFS---NDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAM 307
G VE ++ VT+ N LVKF +K DE L+ GF +E +NA+
Sbjct: 300 GRMVENKVNPSLVTYGILVNGLVKF--EKF-DEANSVLV---EMYSKGF-SPNEFVFNAL 352
Query: 308 ASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKN 367
R+ +D +V D+M KG + T +L F N +++A + E+ ++ N
Sbjct: 353 IDGYSRKGNMDDALRVRDDMTLKGLKPNAVTHNTLLQGFCRTNQMEQAEQVLEYLLS--N 410
Query: 368 KPSVN--CCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMG 425
SVN C+++L + S + D L K+V+ + D++L ++ L G+
Sbjct: 411 VLSVNEDACSYVLHLLCKSSKFDSAL--KIVKALLLRNIKVNDSLLTLLVCGLCKCGKHL 468
Query: 426 ECNKI-LKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSL 484
E + + ++ G A++ + + + L G +E M G + + +L
Sbjct: 469 EAIDLWFRLADKKGLAANTTTSNALLYGLCERGNMEEVFPVCKEMVERGLVLDGISYNTL 528
Query: 485 IKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREY 544
I G C +G +++A +KM+ K+G Y + L+ K + D + +H +++
Sbjct: 529 IFGCCKSGKIEEAFKLKEKMM-KQGFKPDTYTYNFLMKGLADKGKMDDVGRVLHE-AKDH 586
Query: 545 DLKPWHTTYEELIKNLLVQRGFKDALSL 572
+ P TY +++ +A+SL
Sbjct: 587 GVVPNIYTYALMLEGYCNADRIDNAVSL 614
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 81/326 (24%), Positives = 132/326 (40%), Gaps = 36/326 (11%)
Query: 346 FSERNMVKEAVDLYEFAMACKN---KPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFREN 402
F+ V L F+ A KN + +V L+R ++ S + F+ + R+ N
Sbjct: 83 FTHHTTVNLKTTLDFFSFASKNFKFRFTVRSYCILIRLLLASNHIPRAKFT-LKRLIEGN 141
Query: 403 GNVL---TDAMLNSVLKALISVGR--MGECNKILKAM----EEGGFIAS----------- 442
N TDA L+ + A + +G GE + ++ + + GF +
Sbjct: 142 ANTPLKKTDARLSEIASAFLELGERSHGELDLLIYILCSQFQHLGFHWAFDTFMLFTSKG 201
Query: 443 --SNMKSKIAFRLSSAGKKDEANE---FMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKA 497
++KS F +SS K +E ++ D M G + + + I +C G +D+A
Sbjct: 202 VFPSLKS-CNFLMSSLVKSNELHKSFRVFDAMCRGGVLIDVYTYATAINAYCKGGKIDEA 260
Query: 498 ADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELI 557
F KM E G + L++ C R +A F V E + P TY L+
Sbjct: 261 VGLFLKMGEG-GVLPNVVTYNNLIDGLCKSGRLEEALMFKGRMV-ENKVNPSLVTYGILV 318
Query: 558 KNLLVQRGFKDALSLLCLMKDHGFPP--FV-DPFIKYVSKSGTSDDAIAFLKGMTSKRF- 613
L+ F +A S+L M GF P FV + I S+ G DDA+ MT K
Sbjct: 319 NGLVKFEKFDEANSVLVEMYSKGFSPNEFVFNALIDGYSRKGNMDDALRVRDDMTLKGLK 378
Query: 614 PSMSVVLCLFAAFFQARRHSEAQDLL 639
P+ L F + + +A+ +L
Sbjct: 379 PNAVTHNTLLQGFCRTNQMEQAEQVL 404
Score = 44.7 bits (104), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 62/277 (22%), Positives = 111/277 (40%), Gaps = 14/277 (5%)
Query: 369 PSVNCCTFLLRKIVVSKQL--DMRLFSKVVRVFRENGNVLTDA-MLNSVLKALISVGRMG 425
PS+ C FL+ +V S +L R+F + R G VL D + + A G++
Sbjct: 204 PSLKSCNFLMSSLVKSNELHKSFRVFDAMCR-----GGVLIDVYTYATAINAYCKGGKID 258
Query: 426 ECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLI 485
E + M EGG + + + + L +G+ +EA F M + + + L+
Sbjct: 259 EAVGLFLKMGEGGVLPNVVTYNNLIDGLCKSGRLEEALMFKGRMVENKVNPSLVTYGILV 318
Query: 486 KGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYD 545
G D+A +M K G S + + L++ Y K DA + V + +
Sbjct: 319 NGLVKFEKFDEANSVLVEMYSK-GFSPNEFVFNALIDGYSRKGNMDDALR-VRDDMTLKG 376
Query: 546 LKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDP---FIKYVSKSGTSDDAI 602
LKP T+ L++ + A +L + + D + + KS D A+
Sbjct: 377 LKPNAVTHNTLLQGFCRTNQMEQAEQVLEYLLSNVLSVNEDACSYVLHLLCKSSKFDSAL 436
Query: 603 AFLKGMTSKRFP-SMSVVLCLFAAFFQARRHSEAQDL 638
+K + + + S++ L + +H EA DL
Sbjct: 437 KIVKALLLRNIKVNDSLLTLLVCGLCKCGKHLEAIDL 473
>gi|297804088|ref|XP_002869928.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297315764|gb|EFH46187.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 731
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 79/376 (21%), Positives = 143/376 (38%), Gaps = 57/376 (15%)
Query: 250 WGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMAS 309
WG V +L L + + + V KLG++ A FF WA + KHD ++YNA A
Sbjct: 113 WGPSVVSELNKLRRVTPSIVAE--VLKLGNDATAAAKFFHWAGKQKGYKHDFAAYNAFAY 170
Query: 310 VLGRED---CIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACK 366
L R D+ +++D E + E +++ ++ +YE
Sbjct: 171 CLNRNGHFRAADQLPELMDSQGRPPSEKQFEILIRM---HADNRRGLRVYYVYEKMKKFG 227
Query: 367 NKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGE 426
KP V ++ +V + D+ L V F+E+G V ++K L GR+ E
Sbjct: 228 FKPRVFLYNRIMDALVKNGYFDLAL--AVYEDFKEDGLVEESTTFMILVKGLCKAGRIEE 285
Query: 427 CNKILKAMEEG--------------GFIASSNMKSK---------------------IAF 451
+IL+ M E ++ N+ + +
Sbjct: 286 MLEILQRMRENLCKPDVFAYTAMIKTLVSEGNLDASLRVWDEMKRDEIKPDVMAYGTLVV 345
Query: 452 RLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTS 511
L G+ + E M+ + +++ LI+G G + A D ++ +V+
Sbjct: 346 GLCKDGRIERGYELFMEMKGKQILIDREIYRVLIEGFVADGKVRSACDLWKDLVD----- 400
Query: 512 HAGYAIDL-----LVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGF 566
+GY DL ++ CS N+ A + E +L+P T ++ +V
Sbjct: 401 -SGYIADLGIYNAVIKGLCSVNQVDKAYNLFQVAIEE-ELEPDFETLSPIMVAYVVMNRL 458
Query: 567 KDALSLLCLMKDHGFP 582
D +LL + + G+P
Sbjct: 459 SDFSNLLERIGELGYP 474
>gi|255660812|gb|ACU25575.1| pentatricopeptide repeat-containing protein [Glandularia incisa]
Length = 418
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 55/226 (24%), Positives = 91/226 (40%), Gaps = 4/226 (1%)
Query: 332 YEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRL 391
+ + +TC KVL + K YE ++ C S+ L+ V K+ ++RL
Sbjct: 97 FRVPFDTCRKVLEHLMKLKYFKLVWGFYEESLECGYPASLYFFNILMHSFV--KEGEIRL 154
Query: 392 FSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAF 451
V + G + N+++ I +G + E ++ AM+ G S +
Sbjct: 155 AQSVFDAITKWGLRPSVVSFNTLMNGYIKLGNLDEGFRLKNAMQASGVQPDVYTYSVLIN 214
Query: 452 RLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTS 511
L K D+ANE D M +G + +LI GHC G +D A + +++M+ + S
Sbjct: 215 GLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLS-QSLS 273
Query: 512 HAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELI 557
+ L+ C K A + LKP TY LI
Sbjct: 274 PDLITYNTLIYGLCKKGDLKQAQDLTDEMSMK-GLKPDKITYTTLI 318
Score = 49.3 bits (116), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 99/434 (22%), Positives = 172/434 (39%), Gaps = 36/434 (8%)
Query: 161 RLSSKTYNLMLRIVGVHGLVQEFWGLVD-VMKKKGYGVASHVRNKMTEKFEKEGLE-SDL 218
R + ++Y M+ + H ++ E L+ V+ +KG G AS V + E +G + SD+
Sbjct: 10 RHTLQSYCTMIHFLCTHQMIPEAKTLIQIVVSRKGKGSASAVFAAI---LETKGTQISDI 66
Query: 219 EKLKGIFA----TGSIDNSIEKVASRICKVVRSDIWGDDVERQLRDL-NVTFSNDLVKFV 273
G+ +G + ++IE R+ K + + D + L L + + + F
Sbjct: 67 YVFSGLITAYLESGFLRDAIE--CYRLTKEHKFRVPFDTCRKVLEHLMKLKYFKLVWGFY 124
Query: 274 VDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYE 333
+ L +L FF S FVK E SV D I + W + + S +
Sbjct: 125 EESLECGYPASLYFFNILMHS-FVK--EGEIRLAQSVF---DAITK-WGLRPSVVS--FN 175
Query: 334 MEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLD--MRL 391
M +K LG E +K A+ A +P V + L+ + ++D L
Sbjct: 176 TLMNGYIK-LGNLDEGFRLKNAMQ------ASGVQPDVYTYSVLINGLCKESKMDDANEL 228
Query: 392 FSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAF 451
F +++ +NG V +++ GR+ +I K M + + +
Sbjct: 229 FDEML----DNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIY 284
Query: 452 RLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTS 511
L G +A + D M G + +LI G C G L+ A + ++M+ KE
Sbjct: 285 GLCKKGDLKQAQDLTDEMSMKGLKPDKITYTTLIDGSCKEGHLETAFEYRKRMI-KENIR 343
Query: 512 HAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALS 571
A L++ C + R++DA K + + LKP TY +I +
Sbjct: 344 LDDVAYTALISGLCQEGRSVDAEKMLREML-SVGLKPEIGTYTMIINEFCKKGDVWTGSK 402
Query: 572 LLCLMKDHGFPPFV 585
LL M+ G+ P V
Sbjct: 403 LLKEMQRDGYAPSV 416
>gi|449493486|ref|XP_004159312.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At1g22960, mitochondrial-like [Cucumis sativus]
Length = 772
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 110/585 (18%), Positives = 219/585 (37%), Gaps = 73/585 (12%)
Query: 101 FTVVSDIFYKFSDVNDISKQLELSGVVFTHEMVLKVLKNLESSPDEARRFFNWVLEKESE 160
F + + + F N +S Q V+ + ++VL ++ P A RFF WV+ +
Sbjct: 58 FDTIKEKPWAFCKNNWVSDQF--GAVITDPHLFIRVLHSMRIRPRVALRFFRWVMAQPDF 115
Query: 161 RLSSKTYNLMLRI-VGVHGLVQEFWGLVDVMKKKGYGV-----ASHVRNKMT-EKFEKEG 213
+ S + +L I VG + +W + V+ + +GV A HV + +K + G
Sbjct: 116 KESEFVFCAILDILVGNDLMHAAYWVMERVVSFEMHGVVDVLIAGHVXCLLVFDKMIRNG 175
Query: 214 LESDLEKLKGIFATGSIDNSIEKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFV 273
L D++ I +N + K +++G + ++ VT++ L +
Sbjct: 176 LLPDVKNCNRILRVLRDENLLSKA---------KNVYGMMEQFGIKPTVVTYNTMLDSYC 226
Query: 274 VDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYE 333
+ D+ AL +E G +D +YN + + L ++ +++ +++EM + G
Sbjct: 227 KEGRVDQ---ALELLSEMQERGCYPND-VTYNVLVNGLSKKGELEQAKGLIEEMLNSGLN 282
Query: 334 MEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQL------ 387
+ T ++ F ++ + EA DL E + + P+++ L+ + Q+
Sbjct: 283 VSAYTYNPLINGFCQKGLFVEAFDLVEEMVNRRAFPTLSTYNTLMYGLCKWVQVTGVRLR 342
Query: 388 -----------DMRLFSKVVRVFRENGNVLTDAML-----------------NSVLKALI 419
D+ F+ ++ + G +++A L N+++ L
Sbjct: 343 FSDMLKSKFTPDIVSFNSLLYGYCRTG-CISEAFLLFDELKCRDLVPTVITYNTLIHGLC 401
Query: 420 SVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDK 479
G + ++ K M + G + + G A F + M + G
Sbjct: 402 MWGYLDAALRLKKEMTDQGLFPDIFTYTILVNGCFKLGYVSMARGFFNEMLSKGLKPDRF 461
Query: 480 MWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLL-----VNTYCSKNRAIDAC 534
+ + I G D A ++M+ AG+ D++ V+ C + +AC
Sbjct: 462 AYNTRIVGEMKIADTSVAFSMQEEMLA------AGFPPDVITYNVFVHALCQQGNFEEAC 515
Query: 535 KFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPFIKYVSK 594
+ N V + L P H TY +I + + A + M G P V + +
Sbjct: 516 DLLENMVSD-GLIPDHVTYTSIINGFVKNGHLRKAREVFNEMLSKGVAPSVVTYTVLIHA 574
Query: 595 SGTS---DDAIAFLKGMTSKRFPSMSVVL-CLFAAFFQARRHSEA 635
D A + M K P+ + + RR EA
Sbjct: 575 HAAKQMLDLAFMYFSKMLEKSVPANVITYNAIINGLCMTRRMDEA 619
Score = 38.9 bits (89), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 42/172 (24%), Positives = 64/172 (37%), Gaps = 2/172 (1%)
Query: 412 NSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEA 471
N + AL G E +L+ M G I + I G +A E + M +
Sbjct: 499 NVFVHALCQQGNFEEACDLLENMVSDGLIPDHVTYTSIINGFVKNGHLRKAREVFNEMLS 558
Query: 472 SGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAI 531
G + LI H LD A F KM+EK ++ + ++N C R
Sbjct: 559 KGVAPSVVTYTVLIHAHAAKQMLDLAFMYFSKMLEKSVPANV-ITYNAIINGLCMTRRMD 617
Query: 532 DACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPP 583
+A K+ + E + P +Y LI +++AL L M D P
Sbjct: 618 EAYKYFDE-MEEKGILPNKFSYTILINESCNMGYWEEALRLYREMLDRKIQP 668
>gi|356562834|ref|XP_003549673.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g74580-like [Glycine max]
Length = 747
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 87/375 (23%), Positives = 153/375 (40%), Gaps = 30/375 (8%)
Query: 158 ESERLSSKTY------NLMLRIVGVHGLVQEFWGLVD--VMKKKGYGVASHVRNKMTEKF 209
ESERL K NL + V GL +E G +D V + ++R + F
Sbjct: 234 ESERLLGKVLKRGVCPNLFTFNIFVQGLCRE--GALDRAVRNSRVVEAEEYLRKMVNGGF 291
Query: 210 EKEGLESDLEKLKGIFATGSIDNSIEKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDL 269
E + L + + G G + + A+R+ K D V + + T+ + +
Sbjct: 292 EPDDLTYN-SIIDGYCKKGMVQD-----ANRVLK--------DAVFKGFKPDEFTYCSLI 337
Query: 270 VKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRS 329
F D GD P +A+ F+ G ++ YN + L ++ I ++++EM
Sbjct: 338 NGFCKD--GD-PDRAMAVFKDGLGKG-LRPSIVLYNTLIKGLSQQGLILPALQLMNEMAE 393
Query: 330 KGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDM 389
G + T V+ + V +A L + A+A P + L+ KQL +
Sbjct: 394 NGCLPNIWTYNLVINGLCKMGCVSDASHLVDDAIAKGCPPDIFTYNTLIDG--YCKQLKL 451
Query: 390 RLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKI 449
+++V G N++L L G+ E +I KAMEE G + + I
Sbjct: 452 DSATEMVNRMWSQGMTPDVITYNTLLNGLCKAGKSEEVMEIFKAMEEKGCTPNIITYNII 511
Query: 450 AFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEG 509
L A K +EA + + M++ G + +L G C GD+D A F++M ++
Sbjct: 512 VDSLCKAKKVNEAVDLLGEMKSKGLKPDVVSFGTLFTGFCKIGDIDGAYQLFRRMEKQYD 571
Query: 510 TSHAGYAIDLLVNTY 524
H +++V+ +
Sbjct: 572 VCHTTATYNIIVSAF 586
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 85/372 (22%), Positives = 146/372 (39%), Gaps = 24/372 (6%)
Query: 274 VDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYE 333
V K+ +P KAL F A+ KH S+Y + LG + K+L EMR
Sbjct: 13 VVKIQTDPLKALEMFNSAKSEDGFKHTASTYKCIVQKLGHHGEFEEMEKLLSEMRENVNN 72
Query: 334 MEMETC-VKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLF 392
+E ++ + + + V+EAVD +E PSV+ ++ +V +
Sbjct: 73 ALLEGAYIEAMKNYGRKGKVQEAVDTFERMDFYNCDPSVHSHNAIMNILVEFGYHNQA-- 130
Query: 393 SKVVRVFRENGNVLTDAMLNSV-LKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAF 451
KV R+ G V +D ++ +K+ R ++L+ M E G +++ +
Sbjct: 131 HKVYMRMRDRG-VQSDVYTYTIRIKSFCKTARPYAALRLLRNMPELGCDSNAVAYCTVVA 189
Query: 452 RLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTS 511
L +G+ D A E D M A + L+ C G + ++ K++ K G
Sbjct: 190 GLYDSGEHDHARELFDEMLARCLCPDVVAFNKLVHVLCKKGLVFESERLLGKVL-KRGVC 248
Query: 512 HAGYAIDLLVNTYCSK---------NRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLV 562
+ ++ V C + +R ++A +++ V +P TY +I
Sbjct: 249 PNLFTFNIFVQGLCREGALDRAVRNSRVVEAEEYLRKMVNG-GFEPDDLTYNSIIDGYCK 307
Query: 563 QRGFKDALSLLCLMKDHGFPPFVDPF-----IKYVSKSGTSDDAIAFLK-GMTSKRFPSM 616
+ +DA +L GF P D F I K G D A+A K G+ PS+
Sbjct: 308 KGMVQDANRVLKDAVFKGFKP--DEFTYCSLINGFCKDGDPDRAMAVFKDGLGKGLRPSI 365
Query: 617 SVVLCLFAAFFQ 628
+ L Q
Sbjct: 366 VLYNTLIKGLSQ 377
>gi|294460219|gb|ADE75692.1| unknown [Picea sitchensis]
Length = 433
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 91/387 (23%), Positives = 153/387 (39%), Gaps = 64/387 (16%)
Query: 237 VASRICKVVRSDIWGD-DVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESG 295
A IC+V+ GD D+E L L V + LV V DK+ P AL FF+WA+
Sbjct: 100 AAREICQVLEK---GDEDMEEALSQLGVHLTPQLVNIVFDKIS-VPSLALRFFQWAKLQP 155
Query: 296 FVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEA 355
KH S+Y+ + ++LGR + +VL E+ + V +S +
Sbjct: 156 GFKHATSNYDRLVNILGRSKDFEALQRVLLEISA------------VCCNYSAKT----- 198
Query: 356 VDLYEFAMACKNKPS-VNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSV 414
+ FA A + P +N +L K+ +S + D + ++ V + N
Sbjct: 199 ---FSFATAWHDDPDMLNEVMEMLEKLELSLRRDA--YEMLISVLCQK---------NHA 244
Query: 415 LKALISVGRMG--ECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEAS 472
AL+ + +MG +C +++ + S N + D+ E D ++
Sbjct: 245 NAALMVLEKMGSRDCAPRMQSYRPLIQLYSQN------------NRMDKVQEIFDMLKDC 292
Query: 473 GSDVGDKMWVSLI-KGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAI 531
GD + ++ C +A + ++MV G ++++ C+ +
Sbjct: 293 P---GDPICYHIVLSALCNKKQFAEAVEFVKRMVNM-GWKPDAITYNIMIRAACNLGKIQ 348
Query: 532 DACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDP---- 587
A K +E L P + TY ++ L RGF A S L++ G +D
Sbjct: 349 GALKLFDRS-KEEGLTPLYHTYVNILDGLFRIRGFDGAHSF--LIQHSGKDRKLDSTNYI 405
Query: 588 -FIKYVSKSGTSDDAIAFLKGMTSKRF 613
IK SKSG A K M +K F
Sbjct: 406 HLIKLSSKSGQEQGARNLRKEMKAKGF 432
>gi|218191848|gb|EEC74275.1| hypothetical protein OsI_09511 [Oryza sativa Indica Group]
Length = 933
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 76/337 (22%), Positives = 132/337 (39%), Gaps = 15/337 (4%)
Query: 276 KLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEME 335
++GD P + R + + D YN + + R +D VLD M+ G +
Sbjct: 181 RVGDTPAALSVADRMTAQG--LPMDVVGYNTLVAGFCRAGQVDAARGVLDMMKEAGVDPN 238
Query: 336 METCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKV 395
+ T + + V+EA DLYE + +N ++ T L +V D R FS+
Sbjct: 239 VATYTPFIVYYCRTKGVEEAFDLYEGMV--RNGVLLDVVT--LSALVAGLCRDGR-FSEA 293
Query: 396 VRVFREN---GNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFR 452
+FRE G V +++ +L GR E +L M G + + +
Sbjct: 294 YALFREMDKVGAVPNHVTYCTLIDSLAKAGRGKELLSLLGEMVSRGVVMDLVTYTALMDW 353
Query: 453 LSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSH 512
L GK DE + + + + + LI C A ++D+A +M EK + +
Sbjct: 354 LGKQGKTDEVKDTLRFALSDNLSLNGVTYTVLIDALCKAHNVDEAEQVLLEMEEKSISPN 413
Query: 513 AGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSL 572
++N + K +D ++E + P TY LI +G AL +
Sbjct: 414 V-VTFSSVINGFV-KRGLLDKATEYKRMMKERGINPNVVTYGTLIDGFFKFQGQDAALEV 471
Query: 573 LCLMKDHGFPP---FVDPFIKYVSKSGTSDDAIAFLK 606
M G VD + + ++G ++A+A K
Sbjct: 472 YHDMLCEGVEVNKFIVDSLVNGLRQNGKIEEAMALFK 508
Score = 39.3 bits (90), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 74/347 (21%), Positives = 135/347 (38%), Gaps = 43/347 (12%)
Query: 297 VKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAV 356
+K D+S+YN M R+ + K+L EM+ + + T ++ V++A
Sbjct: 585 LKPDQSTYNTMIVSHCRKGETAKALKLLHEMKMSSIKPNLITYNTLVAGLFGTGAVEKAK 644
Query: 357 DLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLK 416
L ++ PS +L+ S++LD+ L + + M+N+ L
Sbjct: 645 YLLNEMVSAGFSPSSLTHRRVLQACSQSRRLDVILD-------------IHEWMMNAGLH 691
Query: 417 ALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDV 476
A I+V N +L+ L G +A ++ M SG
Sbjct: 692 ADITV-----YNTLLQV-------------------LCYHGMTRKATVVLEEMLGSGIAP 727
Query: 477 GDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKF 536
+ +LI GHC + LD A + +M+ + + + + L+ S R +A
Sbjct: 728 DTITFNALILGHCKSSHLDNAFATYAQMLHQNISPNIA-TFNTLLGGLESVGRIGEAGTV 786
Query: 537 VHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPFIKYVS--- 593
+ + + L+P + TY+ L+ Q +A+ L C M GF P V + +S
Sbjct: 787 LIE-MEKSGLEPNNLTYDILVTGHGKQSNKVEAMRLYCEMVGKGFVPKVSTYNALISDFT 845
Query: 594 KSGTSDDAIAFLKGMTSKRF-PSMSVVLCLFAAFFQARRHSEAQDLL 639
K+G A K M + P+ L + + + R +E + L
Sbjct: 846 KAGMMTQAKELFKDMQKRGVHPTSCTYDILVSGWSRIRNGTEVKKCL 892
>gi|15228825|ref|NP_188906.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75274241|sp|Q9LUJ4.1|PP248_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At3g22670, mitochondrial; Flags: Precursor
gi|9279685|dbj|BAB01242.1| unnamed protein product [Arabidopsis thaliana]
gi|332643142|gb|AEE76663.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 562
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 100/440 (22%), Positives = 175/440 (39%), Gaps = 45/440 (10%)
Query: 116 DISKQLELSGVVFTHEMVLKVLKNLESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVG 175
D+ K+L VV T +VL+VL+ + ++A FF W + S TYN M+ ++G
Sbjct: 118 DVVKELSKCDVVVTESLVLQVLRRFSNGWNQAYGFFIWANSQTGYVHSGHTYNAMVDVLG 177
Query: 176 VHGLVQEFWGLVDVMKKKGYG--VASHVRNKMTEKFEKEGLES-------DLEKLKGI-- 224
W LV+ M K V +K+ + K G + ++EK G+
Sbjct: 178 KCRNFDLMWELVNEMNKNEESKLVTLDTMSKVMRRLAKSGKYNKAVDAFLEMEKSYGVKT 237
Query: 225 --FATGSI------DNSIEKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDK 276
A S+ +NSIE K+ D ++ R N+ F +
Sbjct: 238 DTIAMNSLMDALVKENSIEHAHEVFLKLF------DTIKPDARTFNILIHG----FCKAR 287
Query: 277 LGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEM 336
D+ + + + E + D +Y + +E R ++L+EMR G +
Sbjct: 288 KFDDARAMMDLMKVTEFTP----DVVTYTSFVEAYCKEGDFRRVNEMLEEMRENGCNPNV 343
Query: 337 ETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVV 396
T V+ + V EA+ +YE P + L+ ++SK F
Sbjct: 344 VTYTIVMHSLGKSKQVAEALGVYEKMKEDGCVPDAKFYSSLIH--ILSKT---GRFKDAA 398
Query: 397 RVFRE--NGNVLTDAML-NSVLKALISVGRMGECNKILKAME-EGGFIASSNMKSKIAFR 452
+F + N V D ++ N+++ A + R ++LK ME E G S N+++
Sbjct: 399 EIFEDMTNQGVRRDVLVYNTMISAALHHSRDEMALRLLKRMEDEEGESCSPNVETYAPLL 458
Query: 453 LSSAGKKDEA--NEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGT 510
KK + HM + + ++ LI+G C++G +++A F++ V K G
Sbjct: 459 KMCCHKKKMKLLGILLHHMVKNDVSIDVSTYILLIRGLCMSGKVEEACLFFEEAVRK-GM 517
Query: 511 SHAGYAIDLLVNTYCSKNRA 530
+LV+ KN A
Sbjct: 518 VPRDSTCKMLVDELEKKNMA 537
Score = 55.8 bits (133), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 78/358 (21%), Positives = 147/358 (41%), Gaps = 51/358 (14%)
Query: 232 NSIEKVASRICKVV----RSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIF 287
N ++K I KV + D +DV ++L +V + LV V+ + + +A F
Sbjct: 93 NVVKKPVEDIDKVCDFLNKKDTSHEDVVKELSKCDVVVTESLVLQVLRRFSNGWNQAYGF 152
Query: 288 FRWAE-ESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYE---MEMETCVKVL 343
F WA ++G+V H +YNAM VLG+ D W++++EM +K E + ++T KV+
Sbjct: 153 FIWANSQTGYV-HSGHTYNAMVDVLGKCRNFDLMWELVNEM-NKNEESKLVTLDTMSKVM 210
Query: 344 GRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENG 403
R ++ +AVD + L+M ++
Sbjct: 211 RRLAKSGKYNKAVDAF---------------------------LEM----------EKSY 233
Query: 404 NVLTDAM-LNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEA 462
V TD + +NS++ AL+ + +++ + + + + + A K D+A
Sbjct: 234 GVKTDTIAMNSLMDALVKENSIEHAHEVFLKLFD-TIKPDARTFNILIHGFCKARKFDDA 292
Query: 463 NEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVN 522
MD M+ + + S ++ +C GD + + ++M +E + +V
Sbjct: 293 RAMMDLMKVTEFTPDVVTYTSFVEAYCKEGDFRRVNEMLEEM--RENGCNPNVVTYTIVM 350
Query: 523 TYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHG 580
K++ + V+ ++E P Y LI L FKDA + M + G
Sbjct: 351 HSLGKSKQVAEALGVYEKMKEDGCVPDAKFYSSLIHILSKTGRFKDAAEIFEDMTNQG 408
>gi|218194640|gb|EEC77067.1| hypothetical protein OsI_15461 [Oryza sativa Indica Group]
Length = 548
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 77/183 (42%), Gaps = 5/183 (2%)
Query: 460 DEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDL 519
D+A E HM G + ++ LI+G C GDL KA + M+ K
Sbjct: 174 DDAMEKFKHMIDIGVPLDTAVYGCLIQGQCNRGDLVKAKELISDMLSKGIPPPCIKFFTS 233
Query: 520 LVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDH 579
++N C + R + K + + + +P T+ L+ + K+A+ LL M+
Sbjct: 234 IINNLCKEGRVAEG-KDIVDLIIHTGQRPNLITFNSLVDGYCLVGNMKEAVGLLDSMESV 292
Query: 580 GFPPFV---DPFIKYVSKSGTSDDAIAFLKGMTSKRFPSMSVVL-CLFAAFFQARRHSEA 635
G P + + + K G DDA+ + M KR SV + FQARR A
Sbjct: 293 GVEPDIYTYNTLVDGYCKHGRIDDALTLFRDMLHKRVTLTSVSYNIILHGLFQARRTVVA 352
Query: 636 QDL 638
+++
Sbjct: 353 KEM 355
>gi|225434476|ref|XP_002278184.1| PREDICTED: pentatricopeptide repeat-containing protein At3g09060
[Vitis vinifera]
Length = 691
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 117/534 (21%), Positives = 196/534 (36%), Gaps = 64/534 (11%)
Query: 145 DEARRFFNWVLEKESERLSS--KTYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVR 202
DEA FF L E+ LS +TYN++++I + L++ M ++G+
Sbjct: 131 DEAESFF---LYFETMGLSPNLQTYNILIKISCRKKQFDKAKELLNWMWEQGFSPDVFSY 187
Query: 203 NKMTEKFEKEGLESDLEKL--------------------KGIFATGSIDNSIEKVASRIC 242
+ K G SD KL G F G I N+
Sbjct: 188 GTLINSLAKNGYMSDALKLFDEMPERGVTPDVACYNILIDGFFKKGDILNA--------- 238
Query: 243 KVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRW----AEESGFVK 298
S+IW ER L+ +V + +++ L K F W E G
Sbjct: 239 ----SEIW----ERLLKGPSVYPNIPSYNVMINGLCKCGKFDESFEIWHRMKKNERG--- 287
Query: 299 HDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDL 358
D +Y+ + L +D +V EM G ++ +L + ++E ++L
Sbjct: 288 QDLYTYSTLIHGLCGSGNLDGATRVYKEMAENGVSPDVVVYNTMLNGYLRAGRIEECLEL 347
Query: 359 YEFAM--ACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVL- 415
++ C+ S N L+R + + ++D + + + E + D+M VL
Sbjct: 348 WKVMEKEGCRTVVSYN---ILIRGLFENAKVDEAI--SIWELLPEK-DCCADSMTYGVLV 401
Query: 416 KALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSD 475
L G + + IL+ E G + S + L G+ DE +D M G
Sbjct: 402 HGLCKNGYLNKALSILEEAENGRGDLDTFAYSSMINGLCREGRLDEVAGVLDQMTKHGCK 461
Query: 476 VGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACK 535
+ ++I G A L+ A F MV K G + L+N R +A
Sbjct: 462 PNPHVCNAVINGFVRASKLEDALRFFGNMVSK-GCFPTVVTYNTLINGLSKAERFSEAYA 520
Query: 536 FVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFV---DPFIKYV 592
V + + KP TY L+ L + AL+L C + GF P V + I +
Sbjct: 521 LVKEMLHK-GWKPNMITYSLLMNGLCQGKKLDMALNLWCQALEKGFKPDVKMHNIIIHGL 579
Query: 593 SKSGTSDDAIAFLKGMTSKR-FPSMSVVLCLFAAFFQARRHSEAQDLLSKCPRY 645
SG +DA+ M ++ P++ L F++ R A + +Y
Sbjct: 580 CSSGKVEDALQLYSEMKQRKCVPNLVTHNTLMEGFYKVRDFERASKIWDHILQY 633
Score = 41.2 bits (95), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 55/275 (20%), Positives = 119/275 (43%), Gaps = 16/275 (5%)
Query: 293 ESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMV 352
E+G D +Y++M + L RE +D VLD+M G + C V+ F + +
Sbjct: 421 ENGRGDLDTFAYSSMINGLCREGRLDEVAGVLDQMTKHGCKPNPHVCNAVINGFVRASKL 480
Query: 353 KEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRE------NGNVL 406
++A+ + ++ P+V L+ + +++ FS+ + +E N++
Sbjct: 481 EDALRFFGNMVSKGCFPTVVTYNTLINGLSKAER-----FSEAYALVKEMLHKGWKPNMI 535
Query: 407 TDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFM 466
T ++L + L ++ + E GF M + I L S+GK ++A +
Sbjct: 536 TYSLL---MNGLCQGKKLDMALNLWCQALEKGFKPDVKMHNIIIHGLCSSGKVEDALQLY 592
Query: 467 DHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCS 526
M+ +L++G D ++A+ + +++ G + ++ + CS
Sbjct: 593 SEMKQRKCVPNLVTHNTLMEGFYKVRDFERASKIWDHILQY-GPQPDIISYNITLKGLCS 651
Query: 527 KNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLL 561
+R DA F+++ V + + P T+ L++ +L
Sbjct: 652 CHRISDAVGFLNDAV-DRGVLPTAITWNILVRAVL 685
Score = 40.8 bits (94), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 63/151 (41%), Gaps = 5/151 (3%)
Query: 482 VSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCV 541
+++IK + D+A D FQ+M E G + + L+N N+ +A F
Sbjct: 82 LTVIKAYAKNSMPDQALDIFQRMHEIFGCQPGIRSYNSLLNALIESNKWDEAESFFLY-F 140
Query: 542 REYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFV---DPFIKYVSKSGTS 598
L P TY LIK ++ F A LL M + GF P V I ++K+G
Sbjct: 141 ETMGLSPNLQTYNILIKISCRKKQFDKAKELLNWMWEQGFSPDVFSYGTLINSLAKNGYM 200
Query: 599 DDAIAFLKGMTSKRF-PSMSVVLCLFAAFFQ 628
DA+ M + P ++ L FF+
Sbjct: 201 SDALKLFDEMPERGVTPDVACYNILIDGFFK 231
>gi|410109913|gb|AFV61036.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
aristata]
Length = 431
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 66/295 (22%), Positives = 112/295 (37%), Gaps = 11/295 (3%)
Query: 266 SNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLD 325
+ L++ VV + G A +F E G + D ++ + + + +
Sbjct: 38 AKSLIQVVVSRKGKGSASA-VFAAIXETXGTQRSDJYVFSGLITAYLESGFLRDAIECYR 96
Query: 326 EMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSK 385
R + + +TC KVL + K YE + C S+ L+ + K
Sbjct: 97 LTREHKFWVPFDTCRKVLEHLMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFC--K 154
Query: 386 QLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNM 445
D+RJ V + G + N+++ I +G + E ++ AM G
Sbjct: 155 DGDIRJAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYT 214
Query: 446 KSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMV 505
S + L K D+ANE D M G + +LI GHC G +D A + +++M+
Sbjct: 215 YSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQML 274
Query: 506 EKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYD---LKPWHTTYEELI 557
+ S + L+ C K A H+ + E LKP TY LI
Sbjct: 275 S-QSLSPDLITYNTLIYGLCKKGDLKQA----HHLIDEMSVKGLKPDKITYTTLI 324
Score = 47.4 bits (111), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 92/446 (20%), Positives = 164/446 (36%), Gaps = 36/446 (8%)
Query: 150 FFNWVLEKESE--RLSSKTYNLMLRIVGVHGLVQEFWGLVDVM-KKKGYGVASHVRNKMT 206
FF W+ + R + Y M+ + H ++ E L+ V+ +KG G AS V +
Sbjct: 3 FFTWLSSPANSTFRHTLHXYCTMIHFLCTHQMLSEAKSLIQVVVSRKGKGSASAVFAAIX 62
Query: 207 EKFEKEGLESDLEKLKGIFATGSIDNSIEKVASRICKVVRSDIWGDDVE--RQLRDLNVT 264
E + SDJ G+ I + S D +E R R+
Sbjct: 63 ETXGTQ--RSDJYVFSGL----------------ITAYLESGFLRDAIECYRLTREHKFW 104
Query: 265 FSNDLVKFVVDKLGDEPKKALI--FFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWK 322
D + V++ L L+ F+ E G+ +N + ++ I
Sbjct: 105 VPFDTCRKVLEHLMKLKYFKLVWGFYEEILECGY-PASLYFFNILMHRFCKDGDIRJAQS 163
Query: 323 VLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIV 382
V D + G + + ++ + + E L +A +P V + L+ +
Sbjct: 164 VFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLC 223
Query: 383 VSKQLD--MRLFSK-VVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGF 439
++D LF + +V+ NG T +++ GR+ +I K M
Sbjct: 224 KESKMDDANELFDEMLVKGLVPNGVTFT-----TLIDGHCKNGRVDLAMEIYKQMLSQSL 278
Query: 440 IASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAAD 499
+ + + L G +A+ +D M G + +LI G C GDLD A +
Sbjct: 279 SPDLITYNTLIYGLCKKGDLKQAHHLIDEMSVKGLKPDKITYTTLIDGCCKEGDLDSAFE 338
Query: 500 CFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKN 559
++M++ E A L++ C + R++DA K + + LKP TY +I
Sbjct: 339 HRKRMIQ-ENIRLDEVAYTALISGLCQEGRSVDAEKMLREML-SVGLKPDARTYTMIINE 396
Query: 560 LLVQRGFKDALSLLCLMKDHGFPPFV 585
+ LL M+ G P V
Sbjct: 397 FCKKGDVWKGXKLLKEMQRDGHVPSV 422
>gi|30679784|ref|NP_195903.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|332278227|sp|Q8GYL7.3|PP361_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At5g02830, chloroplastic; Flags: Precursor
gi|332003140|gb|AED90523.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 852
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 93/414 (22%), Positives = 165/414 (39%), Gaps = 61/414 (14%)
Query: 253 DVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLG 312
DV + N+ + VD D K+A + E SG +K D +Y + V
Sbjct: 330 DVTADMTSYNILLKTCCLAGRVDLAQDIYKEA----KRMESSGLLKLDAFTYCTIIKVFA 385
Query: 313 REDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVN 372
KV D+M+S G T ++ + +V++A L+E +A +P+
Sbjct: 386 DAKMWKWALKVKDDMKSVGVTPNTHTWSSLISACANAGLVEQANHLFEEMLASGCEPNSQ 445
Query: 373 CCTFLLRKIVVSKQLDMRLFSKVVRVFRE-NGNVLTDAMLNSVLKALISVGRMGECNKIL 431
C LL V + Q D + R+F+ G+ + +++ ++S GR N IL
Sbjct: 446 CFNILLHACVEACQYD-----RAFRLFQSWKGSSVNESLYAD---DIVSKGRTSSPN-IL 496
Query: 432 KAMEEGGFIASSN------MKSKIAFRLSSAGKKD----------EANEFMDHMEASGSD 475
K G + ++ + F+ ++A E MD M++ G
Sbjct: 497 KNNGPGSLVNRNSNSPYIQASKRFCFKPTTATYNILLKACGTDYYRGKELMDEMKSLGLS 556
Query: 476 VGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNT----YCSKNRAI 531
W +LI +GD++ A + M AG D++ T C++N+ +
Sbjct: 557 PNQITWSTLIDMCGGSGDVEGAVRILRTM------HSAGTRPDVVAYTTAIKICAENKCL 610
Query: 532 DACKFVHNCVREYDLKPWHTTYEELIK------NLLVQRGFKDALSLLCLMKDHGFPPFV 585
+ +R Y +KP TY L+K +LL R L++ M++ G+ P
Sbjct: 611 KLAFSLFEEMRRYQIKPNWVTYNTLLKARSKYGSLLEVR---QCLAIYQDMRNAGYKPN- 666
Query: 586 DPFIK---------YVSKSGTSDDAIAFLKGMTSKRFPSMSVVLCLFAAFFQAR 630
D F+K + ++G S D I+ +G + R +S+++ A Q R
Sbjct: 667 DHFLKELIEEWCEGVIQENGQSQDKISDQEGDNAGR--PVSLLIEKVATHMQER 718
>gi|224053663|ref|XP_002297917.1| predicted protein [Populus trichocarpa]
gi|222845175|gb|EEE82722.1| predicted protein [Populus trichocarpa]
Length = 670
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 80/353 (22%), Positives = 143/353 (40%), Gaps = 17/353 (4%)
Query: 278 GDEPKKALI--FFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEME 335
G EP + F+ + G + +S++ ++ + KVLD M+ + +
Sbjct: 65 GIEPDPPISDKIFKSGPKMGSYRLGDSTFYSLINNYANLGDFKSLEKVLDRMKCEKRVIF 124
Query: 336 METCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTF-LLRKIVVSKQLDMRLFSK 394
+ + + + + ++ ++AVDL++ MAC+ + +F + +++ + L R
Sbjct: 125 EKCFIVIFKAYGKAHLPEKAVDLFD-RMACEFECKRTGKSFNSVLNVIIQEGLFHRALEF 183
Query: 395 VVRVFRENG-----NVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKI 449
V G NVLT N V+KA+ VG + + ++ + M +
Sbjct: 184 YNHVIGAKGVSISPNVLT---FNLVIKAMCKVGLVDDAIQVFRDMTIRKCEPDVYTYCTL 240
Query: 450 AFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEG 509
L A + DEA +D M+ G + LI G C GDL +AA M K G
Sbjct: 241 MDGLCKADRIDEAVSLLDEMQIDGCFPSPVTFNVLINGLCKKGDLSRAAKLVDNMFLK-G 299
Query: 510 TSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDA 569
+ L++ C K + A + V + P TY +I L+ Q D
Sbjct: 300 CIPNEVTYNTLIHGLCLKGKLEKAISLLDRMVSSKCV-PNVVTYGTIINGLVKQGRALDG 358
Query: 570 LSLLCLMKDHGF---PPFVDPFIKYVSKSGTSDDAIAFLKGMTSKRFPSMSVV 619
+L LM++ G+ I + K G S +A+ K MT K + ++V
Sbjct: 359 ACVLALMEERGYCVNEYVYSTLISGLFKEGKSQEAMHLFKEMTVKGYELNTIV 411
Score = 55.5 bits (132), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 73/314 (23%), Positives = 119/314 (37%), Gaps = 31/314 (9%)
Query: 342 VLGRFSERNMVKEAVDLYEFAMACKN-KPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFR 400
VL + + A++ Y + K S N TF +V+ + L ++VFR
Sbjct: 167 VLNVIIQEGLFHRALEFYNHVIGAKGVSISPNVLTF---NLVIKAMCKVGLVDDAIQVFR 223
Query: 401 E------NGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLS 454
+ +V T L + L R+ E +L M+ G S + + L
Sbjct: 224 DMTIRKCEPDVYTYCTL---MDGLCKADRIDEAVSLLDEMQIDGCFPSPVTFNVLINGLC 280
Query: 455 SAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAG 514
G A + +D+M G + + +LI G C+ G L+KA +MV + +
Sbjct: 281 KKGDLSRAAKLVDNMFLKGCIPNEVTYNTLIHGLCLKGKLEKAISLLDRMVSSKCVPNV- 339
Query: 515 YAIDLLVNTYCSKNRAID-ACKFV-----HNCVREYDLKPWHTTYEELIKNLLVQRGFKD 568
++N + RA+D AC CV EY Y LI L + ++
Sbjct: 340 VTYGTIINGLVKQGRALDGACVLALMEERGYCVNEY-------VYSTLISGLFKEGKSQE 392
Query: 569 ALSLLCLMKDHGF---PPFVDPFIKYVSKSGTSDDAIAFLKGMTSKRF-PSMSVVLCLFA 624
A+ L M G+ I + + G DDA+ L MT+K P+ L
Sbjct: 393 AMHLFKEMTVKGYELNTIVYSAVIDGLCRDGKPDDAVEVLSEMTNKGCTPNAYTCSSLMK 452
Query: 625 AFFQARRHSEAQDL 638
FF+A A ++
Sbjct: 453 GFFEAGNSHRAVEV 466
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 83/358 (23%), Positives = 139/358 (38%), Gaps = 32/358 (8%)
Query: 300 DESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLY 359
D +Y + L + D ID +LDEM+ G T ++ ++ + A L
Sbjct: 233 DVYTYCTLMDGLCKADRIDEAVSLLDEMQIDGCFPSPVTFNVLINGLCKKGDLSRAAKLV 292
Query: 360 E--FAMAC-KNKPSVN------CCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAM 410
+ F C N+ + N C L K + LD + SK V NV+T
Sbjct: 293 DNMFLKGCIPNEVTYNTLIHGLCLKGKLEKAI--SLLDRMVSSKCVP------NVVT--- 341
Query: 411 LNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHME 470
+++ L+ GR + +L MEE G+ + + S + L GK EA M
Sbjct: 342 YGTIINGLVKQGRALDGACVLALMEERGYCVNEYVYSTLISGLFKEGKSQEAMHLFKEMT 401
Query: 471 ASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKN-- 528
G ++ ++ ++I G C G D A + +M K T +A L+ + + N
Sbjct: 402 VKGYELNTIVYSAVIDGLCRDGKPDDAVEVLSEMTNKGCTPNAYTCSSLMKGFFEAGNSH 461
Query: 529 RAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPF 588
RA++ K + +++ Y LI L K+A+ + M G P V +
Sbjct: 462 RAVEVWKD----MAKHNFTQNEVCYSVLIHGLCKDGKVKEAMMVWTQMLGKGCKPDVVAY 517
Query: 589 ---IKYVSKSGTSDDAIAFLKGMTSK---RFPSMSVVLCLFAAFFQARRHSEAQDLLS 640
I +S +G +DA+ M + P + L + S A DLL+
Sbjct: 518 SSMINGLSIAGLVEDAMQLYNEMLCQGPDSQPDVVTYNILLNTLCKQSSISRAIDLLN 575
Score = 45.8 bits (107), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 65/317 (20%), Positives = 126/317 (39%), Gaps = 39/317 (12%)
Query: 303 SYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFA 362
++N + + L ++ + R K++D M KG T ++ + +++A+ L +
Sbjct: 271 TFNVLINGLCKKGDLSRAAKLVDNMFLKGCIPNEVTYNTLIHGLCLKGKLEKAISLLDRM 330
Query: 363 MACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVG 422
++ K P+V ++ +V KQ + V+ + E G + + + ++++ L G
Sbjct: 331 VSSKCVPNVVTYGTIINGLV--KQGRALDGACVLALMEERGYCVNEYVYSTLISGLFKEG 388
Query: 423 RMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWV 482
+ E + K M G+ ++ + S + L GK D+A E + M G
Sbjct: 389 KSQEAMHLFKEMTVKGYELNTIVYSAVIDGLCRDGKPDDAVEVLSEMTNKGCTPNAYTCS 448
Query: 483 SLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDA--------- 533
SL+KG AG+ +A + ++ M + T + +L++ C + +A
Sbjct: 449 SLMKGFFEAGNSHRAVEVWKDMAKHNFTQNE-VCYSVLIHGLCKDGKVKEAMMVWTQMLG 507
Query: 534 --CK-----------------FVHNCVREY--------DLKPWHTTYEELIKNLLVQRGF 566
CK V + ++ Y D +P TY L+ L Q
Sbjct: 508 KGCKPDVVAYSSMINGLSIAGLVEDAMQLYNEMLCQGPDSQPDVVTYNILLNTLCKQSSI 567
Query: 567 KDALSLLCLMKDHGFPP 583
A+ LL M D G P
Sbjct: 568 SRAIDLLNSMLDRGCDP 584
>gi|115452873|ref|NP_001050037.1| Os03g0336000 [Oryza sativa Japonica Group]
gi|108708021|gb|ABF95816.1| expressed protein [Oryza sativa Japonica Group]
gi|113548508|dbj|BAF11951.1| Os03g0336000 [Oryza sativa Japonica Group]
gi|125543773|gb|EAY89912.1| hypothetical protein OsI_11461 [Oryza sativa Indica Group]
gi|215712300|dbj|BAG94427.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 545
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/188 (26%), Positives = 74/188 (39%), Gaps = 2/188 (1%)
Query: 397 RVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSA 456
R R NG + ++ L G E + L M GF + S + L
Sbjct: 152 RALRPNGVTPDAQSYATAVQCLCRKGAPDEAKEALDEMVARGFRPTVATFSAVVGCLCKR 211
Query: 457 GKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYA 516
G+ A E D M A G + + + SLI G C G L++A D K+ E + Y
Sbjct: 212 GRVTRAMEVFDTMRAVGCEPTIRTYNSLIGGLCYVGRLEEALDLLNKLKESPKQTPDIYT 271
Query: 517 IDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLM 576
++++ +C R +A H+ VR L P TY L+ + A SLL M
Sbjct: 272 FTIVLDGFCKVGRTDEATPIFHDAVRN-GLSPTIFTYNALLNGHCKEGNPLKAYSLLMEM 330
Query: 577 -KDHGFPP 583
+ PP
Sbjct: 331 CGNAACPP 338
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 59/279 (21%), Positives = 115/279 (41%), Gaps = 10/279 (3%)
Query: 252 DDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVL 311
D ++R L V+ ND++ + + + A+ FR +G V D SY L
Sbjct: 117 DLLQRDDGALTVSDYNDILSALA--MAGDHDSAVALFRALRPNG-VTPDAQSYATAVQCL 173
Query: 312 GREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSV 371
R+ D + LDEM ++G+ + T V+G +R V A+++++ A +P++
Sbjct: 174 CRKGAPDEAKEALDEMVARGFRPTVATFSAVVGCLCKRGRVTRAMEVFDTMRAVGCEPTI 233
Query: 372 NCCTFLLRKIVVSKQLD--MRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNK 429
L+ + +L+ + L +K+ ++ ++ T VL VGR E
Sbjct: 234 RTYNSLIGGLCYVGRLEEALDLLNKLKESPKQTPDIYT---FTIVLDGFCKVGRTDEATP 290
Query: 430 ILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLI-KGH 488
I G + + + G +A + M + + D++ S++ +
Sbjct: 291 IFHDAVRNGLSPTIFTYNALLNGHCKEGNPLKAYSLLMEMCGNAACPPDRISFSIVLQAL 350
Query: 489 CVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSK 527
AG+ A +++M E+ G G A+D L C +
Sbjct: 351 LRAGETSAAWQAYKRM-ERAGFEADGRALDTLARGLCRQ 388
>gi|317106735|dbj|BAJ53231.1| JHL06P13.11 [Jatropha curcas]
Length = 826
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 75/375 (20%), Positives = 153/375 (40%), Gaps = 41/375 (10%)
Query: 243 KVVRSD-IWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDE 301
++++++ +W + +E + + + S ++ FV D++ D P+ L FF WA + + +
Sbjct: 37 RIIKTETLWQEALEIRFSETDTRVS-EIAHFVFDQIHD-PRLGLNFFEWASKQSTLSNSL 94
Query: 302 SSY--NAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLY 359
+ +++ +L R +L+ M+SK E V+ ++ +VKEA++LY
Sbjct: 95 DGFVCSSLLKLLARFRVFKEIENLLETMKSKELIPTCEALSFVISAYAGSGLVKEALELY 154
Query: 360 EFAMACKN-KPSVNCCTFLLRKIVVSKQLDM--RLFSKVV-------------------- 396
+ N P V C LL +V ++++ +++ ++V
Sbjct: 155 NTVIDVHNCVPDVFACNSLLNLLVHHGKVEIARKVYDEMVDRNGDVDNYTVCIVTKGLCK 214
Query: 397 -------RVFRE----NGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNM 445
R E G V N+++ G + N + K ++ GF+ +
Sbjct: 215 EGKVEEGRHLIEKRWGKGCVPNIVFYNTLIDGYCKNGDIERANLLFKELKVKGFLPTVKT 274
Query: 446 KSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMV 505
+ GK + ++ + M+ G V +++ +I G +AAD + M+
Sbjct: 275 YGAMINAFCKKGKFEAVDKLLVEMKERGLAVSLQIFNGIIDARFKHGCEIEAADAVRWMI 334
Query: 506 EKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRG 565
E G + L+N CSK + +A + + + +R L P +Y LI
Sbjct: 335 E-SGCEPDMATYNTLINGSCSKGKVREAEELLEHAIRR-GLFPNKFSYTPLIHAFSKNGE 392
Query: 566 FKDALSLLCLMKDHG 580
+ A LL M + G
Sbjct: 393 YVRASELLIEMSERG 407
Score = 40.8 bits (94), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 49/219 (22%), Positives = 89/219 (40%), Gaps = 5/219 (2%)
Query: 393 SKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFR 452
+ VR E+G A N+++ S G++ E ++L+ G + + +
Sbjct: 327 ADAVRWMIESGCEPDMATYNTLINGSCSKGKVREAEELLEHAIRRGLFPNKFSYTPLIHA 386
Query: 453 LSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSH 512
S G+ A+E + M G + + +L+ G VAG++D A KM+E+ G
Sbjct: 387 FSKNGEYVRASELLIEMSERGHTLDLIAYGALVHGLVVAGEVDVALTVRDKMMER-GILP 445
Query: 513 AGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSL 572
++L++ C K R A K + + + ++ P L+ + +A L
Sbjct: 446 DANIYNVLMSGLCKKGR-FPAAKQLLVEMLDQNVTPDAFVNATLVDGFIRHGNLDEAKKL 504
Query: 573 LCLMKDHGFPPFV---DPFIKYVSKSGTSDDAIAFLKGM 608
L + G V + IK K G +DA+ K M
Sbjct: 505 FQLTIERGIDTSVVECNAMIKGYCKYGMMNDALLCFKRM 543
>gi|125561029|gb|EAZ06477.1| hypothetical protein OsI_28715 [Oryza sativa Indica Group]
Length = 621
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 64/294 (21%), Positives = 130/294 (44%), Gaps = 12/294 (4%)
Query: 329 SKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLD 388
S G+E + ++ + ++ A+ ++E + P+V T L+ + S +++
Sbjct: 205 SNGFEPNIVVYNALIDGYCNAGEMEHALKVFEGMDGNRCSPNVRTYTELIHGLCKSGKVE 264
Query: 389 --MRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMK 446
M LFS++V E NV+T ++++ + G + ++L ME G + +
Sbjct: 265 RAMVLFSRMVEAGLEP-NVVT---YTALIQGQCNEGHLQCAFRLLHLMETNGLVPNDWTF 320
Query: 447 SKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVE 506
S + L K +EA F+ + G V + ++ SLI G C G +D A + QKM+
Sbjct: 321 SVLIDALCKREKVEEAQLFLGSLVKKGVKVNEVVYTSLIDGLCKTGKIDAADELMQKMI- 379
Query: 507 KEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGF 566
EG ++ L++ C + + A + + + E ++ TY +I L+ + G
Sbjct: 380 SEGFVPDAHSYSSLIDGLCRQKKLSQATLMLED-MMEKGIQASPVTYTIIIDELVREVGS 438
Query: 567 KDALSLLCLMKDHGFPPFV---DPFIKYVSKSGTSDDAIAFLKGMTSKR-FPSM 616
+ + M G P + F++ + G +DA + + M + FP++
Sbjct: 439 EGPKKIFDKMIATGINPDIVTYTVFVRSYCEEGRMEDAESMIVQMVDRGVFPNL 492
Score = 40.8 bits (94), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 42/196 (21%), Positives = 87/196 (44%), Gaps = 5/196 (2%)
Query: 391 LFSKVVRVF---RENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKS 447
+ + RVF G + T ++L L+ G + E + M +++ +
Sbjct: 122 MLTHACRVFVLMPLRGCLRTAFTYTALLHGLLGAGMVREAMTVFVGMRADSCAPDTHVYA 181
Query: 448 KIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEK 507
+ L AG+ +EA ++ ++G + ++ +LI G+C AG+++ A F+ M
Sbjct: 182 TMVHGLCEAGRTEEAEVLLEEAMSNGFEPNIVVYNALIDGYCNAGEMEHALKVFEGMDGN 241
Query: 508 EGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFK 567
+ + + L++ C K+ ++ + + + E L+P TY LI+ + +
Sbjct: 242 RCSPNVRTYTE-LIHGLC-KSGKVERAMVLFSRMVEAGLEPNVVTYTALIQGQCNEGHLQ 299
Query: 568 DALSLLCLMKDHGFPP 583
A LL LM+ +G P
Sbjct: 300 CAFRLLHLMETNGLVP 315
>gi|297801170|ref|XP_002868469.1| hypothetical protein ARALYDRAFT_330235 [Arabidopsis lyrata subsp.
lyrata]
gi|297314305|gb|EFH44728.1| hypothetical protein ARALYDRAFT_330235 [Arabidopsis lyrata subsp.
lyrata]
Length = 448
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 73/337 (21%), Positives = 136/337 (40%), Gaps = 44/337 (13%)
Query: 304 YNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAM 363
YNA+ S R+ ++ +VLD M+ + + ETC +L + ++E+ +
Sbjct: 74 YNALLSGYLRKGQLELAVRVLDHMKEENVDKNQETCEILLNYYVSAGRLEES---WRVVN 130
Query: 364 ACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGR 423
K + F L V + K++R++R+NG M L
Sbjct: 131 EMKKR------MFRLNSFV---------YGKIIRIYRDNG------MWKKAL-------- 161
Query: 424 MGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASG-SDVGDKMWV 482
I++ ++E G + + I G+ DEA + ++ M++S S W
Sbjct: 162 -----GIVEEIKEIGLPMDVEIYNSIIDTFGKYGELDEALDVLEKMQSSSDSKPNISTWN 216
Query: 483 SLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVR 542
SLI+ HC G LD A + F M ++ ++L+ T +N + ++
Sbjct: 217 SLIRWHCHHGALDMALELFTMMQDQGLYPDPRMFVNLI--TRLGENGNWNMIDKHFESIK 274
Query: 543 EYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPFIKYV---SKSGTSD 599
+ K Y L++ + F+D L+ +K G P + F + ++ G
Sbjct: 275 CKEHKDTRAIYAALVQIIGQFGSFQDVEELVGKLKSQGVAPSANLFCTFANAYAQQGLYK 334
Query: 600 DAIAFLKGMTSKRF-PSMSVVLCLFAAFFQARRHSEA 635
+ LK M ++ P++ ++ L AF A +H EA
Sbjct: 335 QTVKVLKMMENEGIEPNLIMLNVLINAFGTAGKHMEA 371
Score = 42.7 bits (99), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 74/384 (19%), Positives = 150/384 (39%), Gaps = 43/384 (11%)
Query: 155 LEKESERLSSKTYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRNKMTEKFEKEGL 214
+++E+ + +T ++L G ++E W +V+ MKK+ + + S V K+ +
Sbjct: 97 MKEENVDKNQETCEILLNYYVSAGRLEESWRVVNEMKKRMFRLNSFVYGKIIRIYR---- 152
Query: 215 ESDLEKLKGIFATGSIDNSIEKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVV 274
DN + K A I + +++++ + ++ ++
Sbjct: 153 ----------------DNGMWKKALGIVE-------------EIKEIGLPMDVEIYNSII 183
Query: 275 DKLG--DEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGY 332
D G E +AL + S K + S++N++ +D ++ M+ +G
Sbjct: 184 DTFGKYGELDEALDVLEKMQSSSDSKPNISTWNSLIRWHCHHGALDMALELFTMMQDQGL 243
Query: 333 EMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLF 392
+ V ++ R E N +D + ++ CK L +I+ + +
Sbjct: 244 YPDPRMFVNLITRLGE-NGNWNMIDKHFESIKCKEHKDTRAIYAALVQII-GQFGSFQDV 301
Query: 393 SKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFR 452
++V + G + + + A G + K+LK ME G + M + +
Sbjct: 302 EELVGKLKSQGVAPSANLFCTFANAYAQQGLYKQTVKVLKMMENEGIEPNLIMLNVLINA 361
Query: 453 LSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSH 512
+AGK EA H++ SG + +L+K A +K + F++M E G +
Sbjct: 362 FGTAGKHMEALSIYHHIKESGFTPDVVTYSTLMKAFTRAKKYEKVPEIFREM-EASGCTA 420
Query: 513 AGYAIDLLVNTYCSKNRAIDACKF 536
A LL N + S+ CKF
Sbjct: 421 DRKARQLLQNAFMSQ-----TCKF 439
Score = 40.8 bits (94), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 45/244 (18%), Positives = 105/244 (43%), Gaps = 9/244 (3%)
Query: 320 FWK----VLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYE-FAMACKNKPSVNCC 374
WK +++E++ G M++E ++ F + + EA+D+ E + +KP+++
Sbjct: 156 MWKKALGIVEEIKEIGLPMDVEIYNSIIDTFGKYGELDEALDVLEKMQSSSDSKPNISTW 215
Query: 375 TFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAM 434
L+R LDM L ++ + ++ G M +++ L G +K +++
Sbjct: 216 NSLIRWHCHHGALDMAL--ELFTMMQDQGLYPDPRMFVNLITRLGENGNWNMIDKHFESI 273
Query: 435 EEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDL 494
+ + + + + + G + E + +++ G ++ + + G L
Sbjct: 274 KCKEHKDTRAIYAALVQIIGQFGSFQDVEELVGKLKSQGVAPSANLFCTFANAYAQQG-L 332
Query: 495 DKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYE 554
K KM+E EG +++L+N + + + ++A H+ ++E P TY
Sbjct: 333 YKQTVKVLKMMENEGIEPNLIMLNVLINAFGTAGKHMEALSIYHH-IKESGFTPDVVTYS 391
Query: 555 ELIK 558
L+K
Sbjct: 392 TLMK 395
Score = 39.7 bits (91), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 88/375 (23%), Positives = 150/375 (40%), Gaps = 64/375 (17%)
Query: 120 QLELSGVVFTHEMVLKVLKNLESSP------------DEARRFFNWVLEKESERLSSKTY 167
QLEL+ V H V KN E+ +E+ R N ++K RL+S Y
Sbjct: 86 QLELAVRVLDHMKEENVDKNQETCEILLNYYVSAGRLEESWRVVN-EMKKRMFRLNSFVY 144
Query: 168 NLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRNKMTEKFEKEG-LESDLEKLKGIFA 226
++RI +G+ ++ G+V+ +K+ G + + N + + F K G L+ L+ L
Sbjct: 145 GKIIRIYRDNGMWKKALGIVEEIKEIGLPMDVEIYNSIIDTFGKYGELDEALDVL----- 199
Query: 227 TGSIDNSIEKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALI 286
EK+ S SD N++ N L+++ AL
Sbjct: 200 --------EKMQSS------SD----------SKPNISTWNSLIRWHCHH--GALDMALE 233
Query: 287 FFRWAEESGFVKHDESSYNAMASVLGRE---DCIDRFWKVLDEMRSKGYEMEMETCVKVL 343
F ++ G D + + + LG + ID+ ++ + K V+++
Sbjct: 234 LFTMMQDQGLYP-DPRMFVNLITRLGENGNWNMIDKHFESIKCKEHKDTRAIYAALVQII 292
Query: 344 GRFSERNMVKEAVD-LYEFAMACKNKPSVNC-CTFLLRKIVVSKQLDMRLFSKVVRVFR- 400
G+F V+E V L +A PS N CTF + L+ + V+V +
Sbjct: 293 GQFGSFQDVEELVGKLKSQGVA----PSANLFCTF------ANAYAQQGLYKQTVKVLKM 342
Query: 401 -ENGNVLTD-AMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGK 458
EN + + MLN ++ A + G+ E I ++E GF S + + A K
Sbjct: 343 MENEGIEPNLIMLNVLINAFGTAGKHMEALSIYHHIKESGFTPDVVTYSTLMKAFTRAKK 402
Query: 459 KDEANEFMDHMEASG 473
++ E MEASG
Sbjct: 403 YEKVPEIFREMEASG 417
>gi|148907853|gb|ABR17050.1| unknown [Picea sitchensis]
gi|224284228|gb|ACN39850.1| unknown [Picea sitchensis]
Length = 420
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 73/311 (23%), Positives = 127/311 (40%), Gaps = 13/311 (4%)
Query: 283 KALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKV 342
+A+ FR EE G D +YN + + L ++ ++ ++DEM+++G+ + T +
Sbjct: 109 EAMEIFREMEEKGSAP-DSFTYNILINGLCKDAQLEMGVSLMDEMQARGFSPTVVTYTTL 167
Query: 343 LGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFREN 402
+ F V A+D+ + P+ T L++ + +++ + R N
Sbjct: 168 IHGFCTAGRVDAAMDILDEMEHRGITPNTVTYTALIQGLCDCGEVERAILVLKEMKLRGN 227
Query: 403 ---GNVLTDAMLNSVL--KALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAG 457
NV+T L L K L +G + L M G ++ + + L G
Sbjct: 228 ECCPNVVTYTQLIHGLCQKGLFEMGM-----EFLDEMIISGCFPNNATYTALIHGLCQKG 282
Query: 458 KKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAI 517
EA ++ M A G ++ ++ SLI G C G+LD A + MVEK G + +
Sbjct: 283 SFLEAAVLLNEMVAIGCELDVVIYNSLIDGLCKMGELDFAREMQILMVEK-GVAPDVFTY 341
Query: 518 DLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMK 577
L+ C +A + +R + P TY LI AL L+ MK
Sbjct: 342 TSLIQGLCDAGLLDEALGLMQE-MRAKGIVPNSVTYTTLINGFTQADRTDHALQLVNEMK 400
Query: 578 DHGFPPFVDPF 588
+G P D +
Sbjct: 401 SNGLMPAGDIY 411
Score = 46.6 bits (109), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 63/155 (40%), Gaps = 7/155 (4%)
Query: 415 LKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGS 474
+ L G++ E +I + MEE G S + + L + + MD M+A G
Sbjct: 98 INGLCKKGQIAEAMEIFREMEEKGSAPDSFTYNILINGLCKDAQLEMGVSLMDEMQARGF 157
Query: 475 DVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYC---SKNRAI 531
+ +LI G C AG +D A D +M E G + L+ C RAI
Sbjct: 158 SPTVVTYTTLIHGFCTAGRVDAAMDILDEM-EHRGITPNTVTYTALIQGLCDCGEVERAI 216
Query: 532 DACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGF 566
K + +R + P TY +LI L Q+G
Sbjct: 217 LVLKEMK--LRGNECCPNVVTYTQLIHG-LCQKGL 248
>gi|449467169|ref|XP_004151297.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g21222-like [Cucumis sativus]
gi|449518833|ref|XP_004166440.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g21222-like [Cucumis sativus]
Length = 609
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 83/400 (20%), Positives = 154/400 (38%), Gaps = 73/400 (18%)
Query: 144 PDEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRN 203
P EA+ FN ++E + R ++ TY ++ + + GL+ M++ G S + N
Sbjct: 73 PQEAQFIFNSLVE-QGHRPTTVTYTALVAALTRQKRFKAISGLLSEMEETGIKPDSILLN 131
Query: 204 KMTEKFEKEGLESDLEKLKGIFATGSIDNSIEKVASRICKVVRSDIWGDDVERQLRDLNV 263
+ F + G ++++ IF +K+ CK S
Sbjct: 132 AIINAFSESG---NVKEAMEIF---------QKMEESGCKPTTS---------------- 163
Query: 264 TFSNDLVKF--VVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFW 321
TF N L+K ++ K P++++ + +K + +YN + L ++ I W
Sbjct: 164 TF-NTLIKGYGIIRK----PEESMKLLELMTRTTNLKPNNRTYNILVGALCKKKSIKEAW 218
Query: 322 KVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKI 381
V+ +M + G + ++ T + +++ +A + + K P+ C ++
Sbjct: 219 NVVHQMLASGVQPDVVTYNTLARAYAQDGETNKAESIIVDMLNKKVNPNERTCGIIVGGY 278
Query: 382 VVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIA 441
L L +VV R+ G + NS++K + +G +K L MEE G
Sbjct: 279 CEQGNLAEAL--RVVYRMRDLGIHPNLVIFNSLIKGFLDIGDSDGVDKALTMMEESGVKP 336
Query: 442 SSNMKSKIAFRLSSAGKKDEANEFMDHMEASG---------------------------- 473
S I SSAG+ D+ E D M SG
Sbjct: 337 DVITFSTIMNGWSSAGRMDKCQEIFDDMLKSGIEPDIHVFSILAKGFVRAGEPVKAESLL 396
Query: 474 ---SDVGDK----MWVSLIKGHCVAGDLDKAADCFQKMVE 506
S G + ++ ++I G C AG ++KA F+ M +
Sbjct: 397 NFMSKYGVRPNVVIFTTIISGWCTAGKMEKAWKVFEHMCD 436
Score = 49.3 bits (116), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 48/236 (20%), Positives = 103/236 (43%), Gaps = 9/236 (3%)
Query: 382 VVSKQLDMRLFSKVVRVFREN--GNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGF 439
+VS +D ++ S+ + N G V + L + L+ G+ E I ++ E G
Sbjct: 32 LVSTPVDSQIQSRCLLCLGNNSCGTVRSRTKL---MNILVERGKPQEAQFIFNSLVEQGH 88
Query: 440 IASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAAD 499
++ + + L+ + + + ME +G + ++I +G++ +A +
Sbjct: 89 RPTTVTYTALVAALTRQKRFKAISGLLSEMEETGIKPDSILLNAIINAFSESGNVKEAME 148
Query: 500 CFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKN 559
FQKM E+ G + L+ Y + ++ K + R +LKP + TY L+
Sbjct: 149 IFQKM-EESGCKPTTSTFNTLIKGYGIIRKPEESMKLLELMTRTTNLKPNNRTYNILVGA 207
Query: 560 LLVQRGFKDALSLLCLMKDHGFPPFV---DPFIKYVSKSGTSDDAIAFLKGMTSKR 612
L ++ K+A +++ M G P V + + ++ G ++ A + + M +K+
Sbjct: 208 LCKKKSIKEAWNVVHQMLASGVQPDVVTYNTLARAYAQDGETNKAESIIVDMLNKK 263
>gi|357438771|ref|XP_003589662.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355478710|gb|AES59913.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 988
Score = 57.4 bits (137), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 113/535 (21%), Positives = 201/535 (37%), Gaps = 82/535 (15%)
Query: 108 FYKFSDVNDISKQL--ELSGVVFTHEMVLKVLKNLESSPDEARRFFNWVLEKESERLSSK 165
FY FS I + V E +L+VL +++ P A RFF WV ++ + S
Sbjct: 27 FYPFSTNPQIDNSVNPHFHSAVTQPEFLLRVLNSVKHRPLTALRFFRWVEKQPNFHRSET 86
Query: 166 TYNLMLRIVGVHGLVQE-FW------------GLVDVMKKKGYGVASHVRNK----MTEK 208
+ +L I+ +G ++ +W G++DV+ G G S V K + +
Sbjct: 87 AFVAILDILAKNGFMKPAYWVMEKAIEVKVDGGVLDVLVGIGCGRNSEVSVKLLDLLIQV 146
Query: 209 FEKEGLESDLEKLKGIFATGSIDNSIEKV--ASRICKVVRSDIWGDDVER--------QL 258
F K+ + LEK +F + + V +R+ K+++ ++VE Q+
Sbjct: 147 FAKKLI---LEKCLMVFYKMVNNGLLPDVRNCNRVLKLLKDKSMVNEVEEVYSVMIKCQI 203
Query: 259 RDLNVTFSNDLVKFVVDKLGDEPK--KALIFFRWAEESGFVKHDESSYNAMASVLGREDC 316
R VTF+ ++D E + +A+ G +D SYN + + L +
Sbjct: 204 RPTIVTFNT-----MMDSRCKEGEVGRAVEVLDVMRMFGCDPND-VSYNVLVNGLSGKGE 257
Query: 317 IDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTF 376
DR +++++M G ++ T ++ F ++ M +EA DL + P+V
Sbjct: 258 FDRAKELIEQMSMLGLKVSAHTYNPLIRGFCKKEMFEEANDLRREMLGRGALPTV----- 312
Query: 377 LLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEE 436
N+++ +L +GR+ + + L M
Sbjct: 313 --------------------------------VTYNTIMYSLCRLGRVSDARRYLDVMVN 340
Query: 437 GGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDK 496
+ + + + S G EA + + + +LI G C G+LD
Sbjct: 341 EDLMPDLVSYNTLIYGYSRLGNFAEALLLFSELRSKNLVPSVVTYNTLIDGGCRTGNLDI 400
Query: 497 AADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEEL 556
A M+ K G +LV +C + K + + + LKP Y
Sbjct: 401 AKGMKDDMI-KHGLCPDVVTFTILVRGFCQMGN-LPMAKELFDEMLSRGLKPDCIAYTTR 458
Query: 557 IKNLLVQRGFKDALSLLCLMKDHGFPPFV---DPFIKYVSKSGTSDDAIAFLKGM 608
I L A + MK GFPP + + I + K G DDA ++ M
Sbjct: 459 IVGELKLGNPSKAFGMKEEMKAEGFPPDLITYNVLINGLCKLGNFDDANELVQKM 513
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 54/212 (25%), Positives = 91/212 (42%), Gaps = 18/212 (8%)
Query: 388 DMRLFSKVVRVFRENGNV-----LTDAMLNSVLKA--------LISVGRMGECNKILKAM 434
D+ F+ +VR F + GN+ L D ML+ LK ++ ++G +K
Sbjct: 416 DVVTFTILVRGFCQMGNLPMAKELFDEMLSRGLKPDCIAYTTRIVGELKLGNPSKAFGMK 475
Query: 435 EE---GGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVA 491
EE GF + + L G D+ANE + M G + S+I H ++
Sbjct: 476 EEMKAEGFPPDLITYNVLINGLCKLGNFDDANELVQKMRLEGIVPDHVTYTSIIHAHLIS 535
Query: 492 GDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHT 551
G L KA + F M+ K+G + +L+++Y + R +D K + +++ + P
Sbjct: 536 GLLRKAEEVFSDML-KKGIHPSVVTYTVLIHSYAVRGR-LDFAKKYFDEMQDKGVSPNVI 593
Query: 552 TYEELIKNLLVQRGFKDALSLLCLMKDHGFPP 583
TY LI L + A +L M+ G P
Sbjct: 594 TYNALIYGLCKENMMDVAYNLFAEMESKGVSP 625
>gi|302773712|ref|XP_002970273.1| hypothetical protein SELMODRAFT_411148 [Selaginella moellendorffii]
gi|300161789|gb|EFJ28403.1| hypothetical protein SELMODRAFT_411148 [Selaginella moellendorffii]
Length = 831
Score = 57.4 bits (137), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 83/337 (24%), Positives = 145/337 (43%), Gaps = 18/337 (5%)
Query: 283 KALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMET-CVK 341
+AL FFRW + F KHD +YN + L R + + +V ++M ++G T V
Sbjct: 112 EALTFFRWLQARNF-KHDVFTYNCLLDKLIRHRDLKQAGQVFEKMVAQGVVPNGFTYAVL 170
Query: 342 VLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRE 401
V ERN EAV + + KPS + L +K+ + + + RVF
Sbjct: 171 VQSSCYERNS-DEAVRFFGEMVDKGFKPS----STLYQKVTECLKATGKE-GEFSRVFGR 224
Query: 402 N--GNVLTDAML-NSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGK 458
+ V + ML ++L + + E +K+ +AM + G + + S +
Sbjct: 225 DLEKRVAVEMMLKKALLVNFVIQDKAIEASKLFRAMVKSGCKPDATIYSYMVLAHCKLEN 284
Query: 459 KDEANE-FMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAI 517
DEA + F++ S + + + W + + G C +G +++A + + M E +S Y
Sbjct: 285 LDEAFKLFLEMAVESKAPLNNVAWTAFLSGLCKSGKIEQAFEACRTMQESLSSSQPVY-- 342
Query: 518 DLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMK 577
D+L+ R ID + + +++P T +I+ L ALSLL M
Sbjct: 343 DMLIRLLIESGR-IDKAEEACLEIAGRNIQPSSGTCHSVIQELCKAGRVDSALSLLETMI 401
Query: 578 DHGFPPFVDP---FIKYVSKSGTSDDAIAFLKGMTSK 611
G+ P + I + K+ +A FL+GM K
Sbjct: 402 KRGYCPDMATHSMLINELCKADKIQEAQEFLQGMDRK 438
Score = 40.8 bits (94), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 56/276 (20%), Positives = 105/276 (38%), Gaps = 46/276 (16%)
Query: 302 SSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEF 361
++YNA + L R+ I V +EM + G ++ T ++ FS +A +L+E
Sbjct: 518 TTYNAFLNGLMRKGRIADAQGVYEEMVAAGCSPDVITYSTLIHGFSLARKHDQAHELFET 577
Query: 362 AMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISV 421
++ +P N T+ N +L L
Sbjct: 578 MISRGCRP--NAVTY-----------------------------------NCLLHGLCKE 600
Query: 422 GRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMW 481
+ E +++ + M E G + + + + GK ++A E D M + G D +
Sbjct: 601 SKPDEAHELFRKMVERGCDPDRVTYTTLLYGFCNVGKIEQAVEVFDEMVSKGHDPDVVAY 660
Query: 482 VSLIKGHCVAGDLDKAADCFQKMVEKE----GTSHAGYAIDLLVNTYCSKNRAIDACKFV 537
L+KG AG +A FQ MV ++ SH +++++ R DA +
Sbjct: 661 NCLLKGFFRAGKPGEAKQLFQVMVSRQCKPDTVSH-----NIMIDGLSKAKRLDDAVEVF 715
Query: 538 HNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLL 573
+++ P TY LI L ++ +A+ +
Sbjct: 716 ERMEQDHGCSPDLVTYNSLIFGLCGEQRLSEAMKVF 751
>gi|225427482|ref|XP_002263209.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g12700, mitochondrial-like [Vitis vinifera]
Length = 592
Score = 57.4 bits (137), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 67/315 (21%), Positives = 135/315 (42%), Gaps = 13/315 (4%)
Query: 300 DESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLY 359
D +++ + L E I + D+M +G++ T ++ + + A+ L
Sbjct: 143 DTATFTTLIRGLCVEGKIGEALHLFDKMVGEGFQPNGVTYGTLIHGLCKVGNSRAAIRLL 202
Query: 360 EFAMACKN-KPSVNCCTFLLRKIVVSKQLD--MRLFSKVVRVFRENGNVLTDAMLNSVLK 416
+M KN +P+V ++ + +Q++ + +FS+++ G + NS++
Sbjct: 203 R-SMVQKNCEPNVITYNTIIDCLFKDRQVNEALNIFSEMI----AKGISPNVSTYNSIIH 257
Query: 417 ALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDV 476
L ++ M + + + + + + L G A++ +D M G +
Sbjct: 258 GLCKFSEWKHVATLMNEMVDSKIMPNVVIFTTLVDALCKEGMVTIAHDVVDVMIQRGVEP 317
Query: 477 GDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKF 536
+ +L+ GHC+ ++D+A F MV K G + + L+N YC R ID +
Sbjct: 318 DVVTYTALMDGHCLRSEMDEADKVFDTMVRK-GCAPNVISYSTLINGYCKIQR-IDKAMY 375
Query: 537 VHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPF---IKYVS 593
+ + + +L P TY LI L +DA++L M G P + + + Y+
Sbjct: 376 LFEEMCQRELVPNIVTYNTLIHGLCHVGRLRDAIALFHEMVASGQIPDLVTYRILLDYLC 435
Query: 594 KSGTSDDAIAFLKGM 608
K+ D A+A LK +
Sbjct: 436 KTRHLDQAMAMLKAI 450
Score = 44.7 bits (104), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 62/289 (21%), Positives = 118/289 (40%), Gaps = 26/289 (8%)
Query: 304 YNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAM 363
+ + L +E + V+D M +G E ++ T ++ R+ + EA +++ +
Sbjct: 287 FTTLVDALCKEGMVTIAHDVVDVMIQRGVEPDVVTYTALMDGHCLRSEMDEADKVFDTMV 346
Query: 364 ACKNKPSVNCCTFLLRKIVVSKQLD--MRLFSKVVRVFRE-NGNVLTDAMLNSVLKALIS 420
P+V + L+ +++D M LF ++ + RE N++T N+++ L
Sbjct: 347 RKGCAPNVISYSTLINGYCKIQRIDKAMYLFEEMCQ--RELVPNIVT---YNTLIHGLCH 401
Query: 421 VGRMGECNKILKAMEEGGFIASSNMKSKIAFR-----LSSAGKKDEANEFMDHMEASGSD 475
VGR+ + + M +AS + + +R L D+A + +E S
Sbjct: 402 VGRLRDAIALFHEM-----VASGQIPDLVTYRILLDYLCKTRHLDQAMAMLKAIEGSNLA 456
Query: 476 VGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACK 535
+ + +I G C G+L+ A D F + K G + +++N C + +A K
Sbjct: 457 PDIQSYNIVIDGMCRVGELEAAGDLFSSLSSK-GLHPDVWTYTIMINGLCLQGLLAEATK 515
Query: 536 FVHNCVREYD---LKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGF 581
RE + P TY + + L A+ LL M GF
Sbjct: 516 L----FREMNTDGCSPDDCTYNLITRGFLRNNETLSAIQLLQEMLGRGF 560
Score = 43.1 bits (100), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 64/145 (44%), Gaps = 5/145 (3%)
Query: 501 FQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNL 560
K ++ G Y + +++N++C NR +D V + + +P T+ LI+ L
Sbjct: 96 LSKQMDSLGIPSDVYTLAIVINSFCHLNR-VDFGFSVLAKIFKLGHQPDTATFTTLIRGL 154
Query: 561 LVQRGFKDALSLLCLMKDHGFPP---FVDPFIKYVSKSGTSDDAIAFLKGMTSKRF-PSM 616
V+ +AL L M GF P I + K G S AI L+ M K P++
Sbjct: 155 CVEGKIGEALHLFDKMVGEGFQPNGVTYGTLIHGLCKVGNSRAAIRLLRSMVQKNCEPNV 214
Query: 617 SVVLCLFAAFFQARRHSEAQDLLSK 641
+ F+ R+ +EA ++ S+
Sbjct: 215 ITYNTIIDCLFKDRQVNEALNIFSE 239
>gi|224071479|ref|XP_002303480.1| predicted protein [Populus trichocarpa]
gi|222840912|gb|EEE78459.1| predicted protein [Populus trichocarpa]
Length = 836
Score = 57.4 bits (137), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 45/200 (22%), Positives = 88/200 (44%), Gaps = 5/200 (2%)
Query: 415 LKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGS 474
+ LI + ++ E N +LK M E GF+ + + + + G EA + D M + G
Sbjct: 333 INGLIKLEKIDEANCVLKEMSELGFVPNEVVYNTLIDGYCKMGNISEALKIRDDMLSKGI 392
Query: 475 DVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDAC 534
SLI+G C + + +A + ++M+ + + G + +++N C K R + A
Sbjct: 393 SPNSVTLNSLIQGFCKSDQIGQAENVLEEMIGRGLPINQG-SFSMVINWLCLKFRFVTAL 451
Query: 535 KFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFV---DPFIKY 591
F+ + +L+P L+ L +A+ L C + GF P + + I
Sbjct: 452 HFIREMLLR-NLRPNDGLLTTLVSGLCKAGKQGEAVELWCRLLGKGFVPNIVTSNALIHG 510
Query: 592 VSKSGTSDDAIAFLKGMTSK 611
+ K+G + + L+ M +
Sbjct: 511 LCKAGNMQETLKLLRDMLER 530
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 62/284 (21%), Positives = 119/284 (41%), Gaps = 24/284 (8%)
Query: 264 TFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKV 323
F N L+K ++ +A + E GFV +E YN + + I K+
Sbjct: 331 VFINGLIKL------EKIDEANCVLKEMSELGFVP-NEVVYNTLIDGYCKMGNISEALKI 383
Query: 324 LDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVV 383
D+M SKG T ++ F + + + +A ++ E M + P +N +F + ++
Sbjct: 384 RDDMLSKGISPNSVTLNSLIQGFCKSDQIGQAENVLE-EMIGRGLP-INQGSFSM--VIN 439
Query: 384 SKQLDMRLFSK-------VVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEE 436
L R + ++R R N D +L +++ L G+ GE ++ +
Sbjct: 440 WLCLKFRFVTALHFIREMLLRNLRPN-----DGLLTTLVSGLCKAGKQGEAVELWCRLLG 494
Query: 437 GGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDK 496
GF+ + + + L AG E + + M G + +LI G C G + +
Sbjct: 495 KGFVPNIVTSNALIHGLCKAGNMQETLKLLRDMLERGLVFDRITYNTLISGCCKEGKVKE 554
Query: 497 AADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNC 540
+ ++MV K+G Y +LL++ C+ ++ +A + H C
Sbjct: 555 GFELKEEMV-KKGIQPDIYTFNLLLHGLCNADKIDEASRLWHEC 597
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 76/353 (21%), Positives = 139/353 (39%), Gaps = 32/353 (9%)
Query: 231 DNSIEKVASRICKVVRSDIWGDDVERQLRDL------NVTFSNDLVKFVVDKLGDEPKKA 284
D + + S +CK + G+ VE R L N+ SN L+ + K G+ ++
Sbjct: 466 DGLLTTLVSGLCKAGKQ---GEAVELWCRLLGKGFVPNIVTSNALIHGLC-KAGNM-QET 520
Query: 285 LIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLG 344
L R E G V D +YN + S +E + +++ +EM KG + ++ T +L
Sbjct: 521 LKLLRDMLERGLV-FDRITYNTLISGCCKEGKVKEGFELKEEMVKKGIQPDIYTFNLLLH 579
Query: 345 RFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLL------RKIVVSKQLDMRLFSKVVRV 398
+ + EA L+ P+V ++ K+ + L L SK +
Sbjct: 580 GLCNADKIDEASRLWHECKKNGYVPNVYTYGVMIDGYCKANKVEEGENLLNELVSKKLE- 638
Query: 399 FRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGK 458
L + NS+++A G M ++ M+ G + S S + L + G
Sbjct: 639 -------LNSVVYNSLIRAYCINGNMNAAFRLRDDMKSRGVLLSCATYSSLMHGLCNIGL 691
Query: 459 KDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAID 518
D+A +D M G + ++I G+ G ++K Q+M +
Sbjct: 692 VDDAKHLLDEMRKEGLLPNVVCYTTIIGGYSKLGQMNKVNIVLQEM-SSHNIHPNKFTYT 750
Query: 519 LLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLL----VQRGFK 567
++++ +C + +A K + N + E + P TY L V+ FK
Sbjct: 751 IMIDGFCKLGKTKEAAKLL-NEMTEKGILPDAVTYNAFTNGLCKEGKVEEAFK 802
>gi|357467093|ref|XP_003603831.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355492879|gb|AES74082.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 530
Score = 57.4 bits (137), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 55/276 (19%), Positives = 119/276 (43%), Gaps = 9/276 (3%)
Query: 283 KALIFFRWAEE-SGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVK 341
++L FF WA GF E YN M + G+ D W ++D M+S+G + + T
Sbjct: 125 QSLAFFNWATTLEGFPSSPEP-YNEMIDLAGKLRHFDLAWHLIDLMKSRGVRITVSTFSV 183
Query: 342 VLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQL-DMRLFSKVVRVFR 400
++ R+ + EAV + KP + ++ + ++ + LF ++
Sbjct: 184 LVRRYVRAGLAAEAVHAFNRMEDYGCKPDKVSFSIVISSLCKKRRASEAELFFDSLKHKF 243
Query: 401 ENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKD 460
E ++ ++++ +A G + + ++ M+E G + S + L G+
Sbjct: 244 EPDVIVYTSLVHGWCRA----GDIAKAEEVFSDMKEAGVKPNVYTYSIVIDSLCRCGQIT 299
Query: 461 EANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLL 520
A++ M +G D + SL++ H AG +K + +M ++ G + + + L
Sbjct: 300 RAHDVFSEMIDAGCDPNAVTFNSLMRVHVKAGRTEKVLQVYNQM-KRLGCAADTISYNFL 358
Query: 521 VNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEEL 556
+ ++C +A K + V++ + P +T+ +
Sbjct: 359 IESHCKDENLDEAVKVLDTMVKK-GVAPNASTFNSI 393
Score = 45.1 bits (105), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 104/508 (20%), Positives = 184/508 (36%), Gaps = 62/508 (12%)
Query: 34 NLTLHESLHTLSSLLPTSSHTFYSRFSRLPICYSRLINLIDPKNPNFRNPMICSYSSEPA 93
N LH H+LS LP HTF +C S + N N P + S E
Sbjct: 9 NFHLH---HSLSPFLP---HTFR-------LCSSSPLVSEHDTNDNNTTPQNTNLSPEDT 55
Query: 94 MEQKESDFTVVSDIFYKFSDVNDISKQLELSGVVFTHEMVLKVLKNLESSPDEARR---- 149
+ T++ D + K + N +S L LS + E K+ SP RR
Sbjct: 56 -HIVDKFHTIIKDHYRKNPNPNAVSPSLNLSIPDLSIEFS-KISTVYSVSPSITRRAIEK 113
Query: 150 ---------------FFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLVDVMKKKG 194
FFNW E S + YN M+ + G W L+D+MK +G
Sbjct: 114 CSGVRHGIPFLQSLAFFNWATTLEGFPSSPEPYNEMIDLAGKLRHFDLAWHLIDLMKSRG 173
Query: 195 YGVASHVRNKMTEKFEKEGLESDLEKLKGIFATGSIDN--------SIEKVASRICKVVR 246
+ + + ++ + GL ++ + A +++ S V S +CK R
Sbjct: 174 VRITVSTFSVLVRRYVRAGLAAE-----AVHAFNRMEDYGCKPDKVSFSIVISSLCKKRR 228
Query: 247 SDIWGDDVERQLRDLNVTFSNDLVKFVV-----DKLGDEPKKALIFFRWAEESGFVKHDE 301
+ + E L F D++ + + GD K +F E VK +
Sbjct: 229 A----SEAELFFDSLKHKFEPDVIVYTSLVHGWCRAGDIAKAEEVFSDMKEAG--VKPNV 282
Query: 302 SSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEF 361
+Y+ + L R I R V EM G + T ++ + ++ + +Y
Sbjct: 283 YTYSIVIDSLCRCGQITRAHDVFSEMIDAGCDPNAVTFNSLMRVHVKAGRTEKVLQVYNQ 342
Query: 362 AMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISV 421
FL+ + LD + KV+ + G + NS+ + +
Sbjct: 343 MKRLGCAADTISYNFLIESHCKDENLDEAV--KVLDTMVKKGVAPNASTFNSIFGCIAEL 400
Query: 422 GRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKK-DEANEFMDHMEASGSDVGDKM 480
+ +++ M+E + ++ + I R+ + K D + M+ S +
Sbjct: 401 HDVNGAHRMYAKMKELKCMPNT-LTYNILMRMFADSKSIDMVLKLKKEMDESEVEPNVNT 459
Query: 481 WVSLIKGHCVAGDLDKAADCFQKMVEKE 508
+ LI C G + A + ++MVE++
Sbjct: 460 YRILILMFCEKGHWNNAYNLMKEMVEEK 487
>gi|22128712|gb|AAM92824.1| putative chloroplast RNA processing protein [Oryza sativa Japonica
Group]
Length = 878
Score = 57.4 bits (137), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 83/366 (22%), Positives = 143/366 (39%), Gaps = 16/366 (4%)
Query: 242 CKVVRSDI----WGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFV 297
C+ R D+ G+ V++ R +TF+ L DK + I R E G +
Sbjct: 103 CRAGRLDLGFAALGNVVKKGFRVDAITFTPLLKGLCADKRTSDAMD--IVLRRMTELGCI 160
Query: 298 KHDESSYNAMASVLGREDCIDRFWKVLDEM---RSKGYEMEMETCVKVLGRFSERNMVKE 354
D SYN + L E+ ++L M R G ++ + VL F + +
Sbjct: 161 P-DVFSYNNLLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYNTVLNGFFKEGDSDK 219
Query: 355 AVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAML-NS 413
A Y + P V + ++ + ++ +D + +V+ +NG V+ D M NS
Sbjct: 220 AYSTYHEMLDRGILPDVVTYSSIIAALCKAQAMDKAM--EVLNTMVKNG-VMPDCMTYNS 276
Query: 414 VLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASG 473
+L S G+ E LK M G + S + L G+ EA + D M G
Sbjct: 277 ILHGYCSSGQPKEAIGTLKKMRSDGVEPNVVTYSSLMNYLCKNGRSTEARKIFDSMTKRG 336
Query: 474 SDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDA 533
+ + +L++G+ G L + MV + G + ++L+ Y +K +D
Sbjct: 337 LEPDIATYRTLLQGYATKGALVEMHALLDLMV-RNGIQPDHHVFNILICAY-AKQEKVDQ 394
Query: 534 CKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPFIKYVS 593
V + +R++ L P Y +I L DA+ M D G P + + +
Sbjct: 395 AMLVFSKMRQHGLNPNVVCYGTVIDVLCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIH 454
Query: 594 KSGTSD 599
T D
Sbjct: 455 GLCTCD 460
Score = 55.5 bits (132), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 76/365 (20%), Positives = 141/365 (38%), Gaps = 48/365 (13%)
Query: 280 EPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETC 339
+PK+A+ + G V+ + +Y+++ + L + K+ D M +G E ++ T
Sbjct: 286 QPKEAIGTLKKMRSDG-VEPNVVTYSSLMNYLCKNGRSTEARKIFDSMTKRGLEPDIATY 344
Query: 340 VKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLD--MRLFSKVVR 397
+L ++ + + E L + + +P + L+ +++D M +FSK+ R
Sbjct: 345 RTLLQGYATKGALVEMHALLDLMVRNGIQPDHHVFNILICAYAKQEKVDQAMLVFSKM-R 403
Query: 398 VFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAG 457
N NV+ + VL +G
Sbjct: 404 QHGLNPNVVCYGTVIDVL--------------------------------------CKSG 425
Query: 458 KKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAI 517
D+A + + M G ++ SLI G C DKA + +M+++ G
Sbjct: 426 SVDDAMLYFEQMIDEGLTPNIIVYTSLIHGLCTCDKWDKAEELILEMLDR-GICLNTIFF 484
Query: 518 DLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMK 577
+ +++++C + R I++ K VR +KP TY LI + +A LL M
Sbjct: 485 NSIIDSHCKEGRVIESEKLFDLMVR-IGVKPDIITYNTLIDGCCLAGKMDEATKLLASMV 543
Query: 578 DHGFPPFV---DPFIKYVSKSGTSDDAIAFLKGMTSKRF-PSMSVVLCLFAAFFQARRHS 633
G P + I + DDA+A K M S P++ + F RR +
Sbjct: 544 SVGVKPDIVTYGTLINGYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLFHTRRTA 603
Query: 634 EAQDL 638
A++L
Sbjct: 604 AAKEL 608
>gi|255548349|ref|XP_002515231.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223545711|gb|EEF47215.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 505
Score = 57.4 bits (137), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 72/353 (20%), Positives = 138/353 (39%), Gaps = 59/353 (16%)
Query: 241 ICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKL---GDEPKKALIFFRWAEESGFV 297
+ +++ S ++++ L + SNDL+ V+ ++ P +AL FF + +
Sbjct: 42 VYRIITSSSSVQNLKQSLTSTGIFLSNDLIDKVLKRVRFSHGNPLQALEFFYYTDNRKGF 101
Query: 298 KHDESSYNAMASVLGREDCIDRFWKVLDEMRSKG-YEMEMETCVKVLGRFSERNMVKEAV 356
H S + + +LGR D W VL +M+ K + + T VL R ++ V++ V
Sbjct: 102 YHTPYSLDTILYILGRSRKFDHIWDVLIKMKRKDRFLISPRTMQIVLARVAKLCSVRQTV 161
Query: 357 DLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLK 416
+ + R F++ +VL N++L+
Sbjct: 162 ESF-------------------------------------RKFKKFVSVLDTTCFNALLR 184
Query: 417 ALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDV 476
L M + + +++ N+++ LS + +EA F + M G
Sbjct: 185 TLCQEKSMTDARNVYHRLKKE---FKPNLQT-FNILLSGWKQSEEAELFFEEMRELGIKP 240
Query: 477 GDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAI----- 531
+ SLI +C +++KA +KM E++ + V TY S +
Sbjct: 241 DVVSYNSLIDVYCKDREMEKAYKVVEKMREEDISPD--------VITYTSIIGGLGLVGQ 292
Query: 532 -DACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPP 583
D + + N ++EY P Y +I+N + + DA +L+ M G P
Sbjct: 293 PDKARDILNEMKEYGCYPDVAAYNAVIRNYCIAKRLGDASNLMDEMASKGLSP 345
>gi|225436259|ref|XP_002275952.1| PREDICTED: pentatricopeptide repeat-containing protein At5g15010,
mitochondrial-like [Vitis vinifera]
Length = 566
Score = 57.4 bits (137), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 87/405 (21%), Positives = 152/405 (37%), Gaps = 56/405 (13%)
Query: 254 VERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGR 313
V+ +L V S++LV V+ ++ + + A FF WA + H +Y++M S+LG+
Sbjct: 100 VKHKLESCGVAASSELVVEVLSRVRNHWEAAFTFFLWAAKQPGYAHSLRAYHSMISILGK 159
Query: 314 EDCIDRFWKVLDEMRSKGYEMEMET-----------CV-----KVLGRFSERNMVKEAVD 357
D W ++DEMR + T C K + F K V
Sbjct: 160 MRKFDTAWALIDEMRGGRTGTSLVTPHTLSIMIRRYCAVHDVGKAINTFYAHKQFKFGVG 219
Query: 358 LYEF----AMAC--KNKPSVNCCTFLLRKIVVSKQLDMRLFSKVV--------------R 397
+ EF + C KN F R + D + F+ ++ R
Sbjct: 220 IEEFQNLLSALCRYKNVQDAEQLLFCNRNVF---PFDTKSFNIILNGWCNVIGSMREAER 276
Query: 398 VFRENGNVLTDAMLNSVLKALISVGRMGECNKILK---AMEEGGFIASSNMKSKIAFRLS 454
+RE N + S + ++ NK+LK M+E + + + L+
Sbjct: 277 FWREMSNRGIQRDVVSYSSIISCYSKVTNLNKVLKLFNQMKEMEIAPDRKVYNAVVHALA 336
Query: 455 SAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAG 514
A EA M ME G + SLIK A +++A + F +M+++
Sbjct: 337 KASFVKEALNLMKAMEGKGIAPDSVTYNSLIKPLSRARKINEAKEVFDEMLQR------- 389
Query: 515 YAIDLLVNTYCSKNRAIDACKFVHNCV---REYDLKPWHTTYEELIKNLLVQRGFKDALS 571
+ + TY + R + + + V + +E P TY LI+ R +
Sbjct: 390 -GLSPTIRTYHAFFRILKSGEEVFMLLEKMKETGCHPDKDTYIMLIRRFCRWRQLDNVFK 448
Query: 572 LLCLMKDHGFPPFVDPFIKYVSK---SGTSDDAIAFLKGMTSKRF 613
L M ++G P +I + +G ++A + M K+F
Sbjct: 449 LWSEMSENGVGPDRSSYIVLIHGLFLNGKLEEAYKYYIEMKEKQF 493
Score = 40.0 bits (92), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 48/101 (47%), Gaps = 3/101 (2%)
Query: 112 SDVNDISKQLELSGVVFTHEMVLKVLKNLESSPDEARRFFNWVLEKESERLSSKTYNLML 171
S ++ + +LE GV + E+V++VL + + + A FF W ++ S + Y+ M+
Sbjct: 95 SSMSLVKHKLESCGVAASSELVVEVLSRVRNHWEAAFTFFLWAAKQPGYAHSLRAYHSMI 154
Query: 172 RIVGVHGLVQEFWGLVDVMKKKGYG---VASHVRNKMTEKF 209
I+G W L+D M+ G V H + M ++
Sbjct: 155 SILGKMRKFDTAWALIDEMRGGRTGTSLVTPHTLSIMIRRY 195
>gi|297723459|ref|NP_001174093.1| Os04g0618050 [Oryza sativa Japonica Group]
gi|222629567|gb|EEE61699.1| hypothetical protein OsJ_16179 [Oryza sativa Japonica Group]
gi|255675780|dbj|BAH92821.1| Os04g0618050 [Oryza sativa Japonica Group]
Length = 363
Score = 57.4 bits (137), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 56/234 (23%), Positives = 103/234 (44%), Gaps = 5/234 (2%)
Query: 361 FAMACKNK-PSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALI 419
FAM N PS ++L +V +Q + + +V G L N ++K L
Sbjct: 131 FAMPGYNCWPSTKTFNYVLHMLVCKRQYE--VVHEVYLSASRLGVTLDTCCFNILVKGLC 188
Query: 420 SVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDK 479
G+ G+ +L M + G + + S + L G+ D+A E + M+
Sbjct: 189 QFGKFGDAISLLYEMPKQGCVPNVTTYSTLMNFLCQHGQVDKAFELCERMQKEDIVADAV 248
Query: 480 MWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHN 539
++ LI G C + +A + F+ MV K ++G +L++ S + ++A K + +
Sbjct: 249 VYNILIAGLCREQRVTEAFNLFKSMVPKGCYPNSG-TYQVLLDGLLSSGKFVEA-KGLVS 306
Query: 540 CVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPFIKYVS 593
+R ++P ++++ LI L DA +L M + GF P V + K V+
Sbjct: 307 MMRAERMRPGFSSFKLLIDGLCSVNCLDDAHLVLKQMVEQGFVPRVGTWTKLVT 360
>gi|215768057|dbj|BAH00286.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 506
Score = 57.4 bits (137), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 47/187 (25%), Positives = 71/187 (37%), Gaps = 2/187 (1%)
Query: 412 NSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEA 471
N +L L GRMGE + +L M + S + LS G
Sbjct: 89 NVLLSGLCRAGRMGETSALLDEMASQKMVPDGFTYSILFDGLSRNGDSKAMLSLFGKYLK 148
Query: 472 SGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAI 531
+G +GD L+ G C G + A + Q +V G + L+N YC +
Sbjct: 149 NGVTIGDYTCSILLNGLCKDGKVSIAEEVLQSLVNA-GLVPTRVIYNTLINGYCQTGE-L 206
Query: 532 DACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPFIKY 591
+ ++ +KP H TY LI L +A LL M+D+G P V+ F
Sbjct: 207 EGAFSTFGQMKSRHIKPDHITYNALINGLCKAERITNAQDLLMEMQDNGVNPTVETFNTL 266
Query: 592 VSKSGTS 598
+ G +
Sbjct: 267 IDAYGRT 273
Score = 49.7 bits (117), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 56/258 (21%), Positives = 109/258 (42%), Gaps = 6/258 (2%)
Query: 399 FRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGK 458
++NG T N+++ A G++ +C +L M+E G + I GK
Sbjct: 251 MQDNGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAFCKNGK 310
Query: 459 KDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAID 518
EA +D M +++ ++I + G D+A +KM + G S + +
Sbjct: 311 IPEAVAILDDMFHKDVLPNAQVYNAIIDAYVEHGPNDQAFILVEKM-KSNGISPSIVTYN 369
Query: 519 LLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKD 578
LL+ C++++ +A + + N + + L P +Y LI + AL L M
Sbjct: 370 LLIKGLCNQSQISEAEEII-NSLSNHRLIPDAVSYNTLISACCYRGNIDKALDLQQRMHK 428
Query: 579 HGFPPFVDPFIKYVSKSGTSD--DAIAFL--KGMTSKRFPSMSVVLCLFAAFFQARRHSE 634
+G V + + +S G + + + +L K M + PS ++ + A+ + +
Sbjct: 429 YGIKSTVRTYHQLISGLGGAGRLNEMEYLYQKMMQNNVVPSNAIHNIMVEAYSKYGNEIK 488
Query: 635 AQDLLSKCPRYVRNHADV 652
A+DL + + NH D
Sbjct: 489 AEDLRKEMLQKRNNHDDT 506
>gi|124360736|gb|ABN08713.1| Pentatricopeptide repeat [Medicago truncatula]
Length = 479
Score = 57.4 bits (137), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 79/360 (21%), Positives = 146/360 (40%), Gaps = 49/360 (13%)
Query: 265 FSNDLVKFVVDKLGDEPKKALIFFRWAEE--SGFVKHDESSYNAMASVL----------- 311
+N LV+ ++ D K ++F EE +GF +HD +++ AM L
Sbjct: 13 ITNSLVEQLIKAEKDINKTLVMFDSATEEYSNGF-RHDHNTFGAMIHRLVSVNQFRPAEG 71
Query: 312 -----GREDC-------------IDRFWKVLDEMRSKGYEME-------METCVKVLGRF 346
+EDC R + LD +R ++ME ++ + V
Sbjct: 72 MLERMKQEDCEVTEDVFLTICRGYGRVHRPLDAIRV-FHKMEDFQVKPTQKSYLTVFDIL 130
Query: 347 SERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRE--NGN 404
E N VK A+ Y+ P+V L++ + +++ F R+FRE N
Sbjct: 131 VEENHVKRAIGFYKEMREKGIPPTVVSLNILIKALCKNEETVESAF----RLFREMPNRG 186
Query: 405 VLTDA-MLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEAN 463
D+ +++ L +G++ + ++L MEE G S + + L + DEA
Sbjct: 187 CQPDSYTYGTLINGLCKLGKISQAKELLDEMEEKGLSPSVVSYTSLIHGLCQSNNLDEAI 246
Query: 464 EFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNT 523
E ++ M +G + + SL+ G C +G +A + + MV + + L+N
Sbjct: 247 ELLEEMIINGIEPNVFTYSSLMDGLCKSGHSSQAMELLEVMVRRRLLPNM-VTYSTLING 305
Query: 524 YCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPP 583
C + + +A + + +R LKP Y +I L +++A + + M G P
Sbjct: 306 LCKEGKHREAVEILDR-MRLQGLKPDAGMYGRIISGLCAACNYQEAANFIDEMALGGISP 364
>gi|296085490|emb|CBI29222.3| unnamed protein product [Vitis vinifera]
Length = 826
Score = 57.4 bits (137), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 75/362 (20%), Positives = 149/362 (41%), Gaps = 24/362 (6%)
Query: 231 DNSIEKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVK-----FVVDKLGDEPKKAL 285
D + + +CK + D VE R L F +LV + K G+ ++A+
Sbjct: 456 DGLLTTLVGGLCKEGKHS---DAVELWFRLLEKGFGANLVTTNALIHGLCKTGNM-QEAV 511
Query: 286 IFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGR 345
+ E GFV D+ +YN + S +E ++ +K+ EM +G E + T ++
Sbjct: 512 RLLKKMLERGFVL-DKITYNTLISGCCKEGKVEEGFKLRGEMVKQGIEPDTFTYNLLIHG 570
Query: 346 FSERNMVKEAVDLYEFAMACKNK---PSVNCCTFLLRKIVVSKQLDM--RLFSKVVRVFR 400
+ EAV+L+ CK++ P+V ++ + +++ +LF++++
Sbjct: 571 MCRIGKLDEAVNLWN---ECKSRDLVPNVYTYGVMIDGYCKADKIEEGEKLFTELLTQNL 627
Query: 401 ENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKD 460
E L + N++++A G E K+ M G ++ S + + + G+ +
Sbjct: 628 E----LNSVVYNTLIRAYCRNGNTVEAFKLHDDMRSKGIPPTTATYSSLIHGMCNIGRME 683
Query: 461 EANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLL 520
+A +D M G + +LI G+C G +DK + Q+M + + ++
Sbjct: 684 DAKCLIDEMRKEGLLPNVVCYTALIGGYCKLGQMDKVVNVLQEMSSYDIHPNK-ITYTVM 742
Query: 521 VNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHG 580
++ Y A K +H V + + P TY L + ++ + M G
Sbjct: 743 IDGYSKSGDMKTAAKLLHEMVGK-GIVPDTVTYNVLTNGFCKEGKIEEGFKICDYMSQEG 801
Query: 581 FP 582
P
Sbjct: 802 LP 803
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 66/337 (19%), Positives = 140/337 (41%), Gaps = 13/337 (3%)
Query: 282 KKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVK 341
+ A+ FR+ G ++ ++S++ + +W V + MR +G ++
Sbjct: 194 RNAIGVFRFLANKGVFPTVKTCTFLLSSLVKANELEKSYW-VFETMR-QGVSPDVYLFST 251
Query: 342 VLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLD--MRLFSKVVRVF 399
+ F + V++A+ L+ P+V L+ + LD R K+V+
Sbjct: 252 AINAFCKGGKVEDAIQLFFDMEKLGVSPNVVTYNNLIHGLCKHGNLDEAFRFKEKMVKD- 310
Query: 400 RENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKK 459
N ++T ++L + L+ + + E N +LK E GF + + + + G
Sbjct: 311 GVNATLITYSVL---INGLMKLEKFNEANSVLKETLEKGFTPNEVVYNTLIDGYCKMGNL 367
Query: 460 DEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDL 519
+A M + G + S+I+G C G +++A ++M+ + + + G A
Sbjct: 368 GDALRIRGDMVSKGINPNSVTLNSIIQGFCKIGQMEQAECILEEMLSRGFSINPG-AFTT 426
Query: 520 LVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDH 579
+++ C +R A +F+ + +++P L+ L + DA+ L + +
Sbjct: 427 IIHWLCMNSRFESALRFLREMLLR-NMRPNDGLLTTLVGGLCKEGKHSDAVELWFRLLEK 485
Query: 580 GFPP---FVDPFIKYVSKSGTSDDAIAFLKGMTSKRF 613
GF + I + K+G +A+ LK M + F
Sbjct: 486 GFGANLVTTNALIHGLCKTGNMQEAVRLLKKMLERGF 522
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 52/236 (22%), Positives = 87/236 (36%), Gaps = 38/236 (16%)
Query: 412 NSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEA 471
N+++ L G M E ++LK M E GF+ + + GK +E + M
Sbjct: 495 NALIHGLCKTGNMQEAVRLLKKMLERGFVLDKITYNTLISGCCKEGKVEEGFKLRGEMVK 554
Query: 472 SGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKE--------GTSHAGY-------- 515
G + + LI G C G LD+A + + + ++ G GY
Sbjct: 555 QGIEPDTFTYNLLIHGMCRIGKLDEAVNLWNECKSRDLVPNVYTYGVMIDGYCKADKIEE 614
Query: 516 ------------------AIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELI 557
+ L+ YC ++A K +H+ +R + P TY LI
Sbjct: 615 GEKLFTELLTQNLELNSVVYNTLIRAYCRNGNTVEAFK-LHDDMRSKGIPPTTATYSSLI 673
Query: 558 KNLLVQRGFKDALSLLCLMKDHGFPPFVDPFIKYVS---KSGTSDDAIAFLKGMTS 610
+ +DA L+ M+ G P V + + K G D + L+ M+S
Sbjct: 674 HGMCNIGRMEDAKCLIDEMRKEGLLPNVVCYTALIGGYCKLGQMDKVVNVLQEMSS 729
Score = 40.0 bits (92), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 48/238 (20%), Positives = 93/238 (39%), Gaps = 12/238 (5%)
Query: 411 LNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHME 470
LNS+++ +G+M + IL+ M GF + + I L + + A F+ M
Sbjct: 389 LNSIIQGFCKIGQMEQAECILEEMLSRGFSINPGAFTTIIHWLCMNSRFESALRFLREML 448
Query: 471 ASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRA 530
D + +L+ G C G A + + +++EK G + L++ C
Sbjct: 449 LRNMRPNDGLLTTLVGGLCKEGKHSDAVELWFRLLEK-GFGANLVTTNALIHGLCKTGNM 507
Query: 531 IDACKFVHNCV-REYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPF- 588
+A + + + R + L TY LI + ++ L M G P D F
Sbjct: 508 QEAVRLLKKMLERGFVLD--KITYNTLISGCCKEGKVEEGFKLRGEMVKQGIEP--DTFT 563
Query: 589 ----IKYVSKSGTSDDAIAFLKGMTSKRF-PSMSVVLCLFAAFFQARRHSEAQDLLSK 641
I + + G D+A+ S+ P++ + + +A + E + L ++
Sbjct: 564 YNLLIHGMCRIGKLDEAVNLWNECKSRDLVPNVYTYGVMIDGYCKADKIEEGEKLFTE 621
>gi|242058007|ref|XP_002458149.1| hypothetical protein SORBIDRAFT_03g027690 [Sorghum bicolor]
gi|241930124|gb|EES03269.1| hypothetical protein SORBIDRAFT_03g027690 [Sorghum bicolor]
Length = 795
Score = 57.4 bits (137), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 82/334 (24%), Positives = 134/334 (40%), Gaps = 61/334 (18%)
Query: 323 VLDEMRSKG-------YEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCT 375
+ DEMR KG Y++ M C V+GR M +AV L++ KP
Sbjct: 175 LFDEMRCKGYYADAKMYDVVMRAC--VVGR-----MHGDAVRLFDEMAGAGVKPDER--- 224
Query: 376 FLLRKIVVSKQLDMRLFSKVVRVF---RENGNVLTDAMLNSVLKALISVGRMGECNKILK 432
+ I ++ +R + V+V RE G D NSV+ L+ VGRM E ++
Sbjct: 225 --VYAITITGLCKLRDADRAVQVLGKMREAGLKPRDFTYNSVVDVLVKVGRMDEALRLKD 282
Query: 433 AMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAG 492
M L + GKK MD A+ +L++G+C+ G
Sbjct: 283 QM------------------LLATGKK------MDVFLAT----------TLMQGYCLHG 308
Query: 493 DLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTT 552
++ KA D F + V ++G + +L+ ++ + K + E L P
Sbjct: 309 EIGKALDLFDEAV-RDGVTPTNVTYTVLIKGCDAEGMTDETYKLCRQMI-EQGLLPSTYE 366
Query: 553 YEELIKNLLVQRGFKDALSLLCLMKDHGFPPFV--DPFIKYVSKSGTSDDAIAFLKGMTS 610
+ +IK LL + ++DA++L L+ D G P I ++SK +A+ M
Sbjct: 367 FNLVIKGLLRNKQWEDAIALFDLVVDTGVPDVFTYGCLIHWLSKHHKVHEAVNLWDKMKE 426
Query: 611 KRF-PSMSVVLCLFAAFFQARRHSEAQDLLSKCP 643
PS+ L + + EA L S+ P
Sbjct: 427 AGVKPSIVTCHSLLLGYCEKGCMDEALKLYSEMP 460
Score = 47.0 bits (110), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 84/437 (19%), Positives = 159/437 (36%), Gaps = 43/437 (9%)
Query: 128 FTHEMVLKVLKNLESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLV 187
FT+ V+ VL + DEA R + +L +++ +++ +HG + + L
Sbjct: 259 FTYNSVVDVLVKV-GRMDEALRLKDQMLLATGKKMDVFLATTLMQGYCLHGEIGKALDLF 317
Query: 188 DVMKKKGYGVASHVRNKMTEKFEKEGLESDLEKL-KGIFATGSIDNSIEKVASRICKVVR 246
D + G + + + + EG+ + KL + + G + ++ E I ++R
Sbjct: 318 DEAVRDGVTPTNVTYTVLIKGCDAEGMTDETYKLCRQMIEQGLLPSTYE-FNLVIKGLLR 376
Query: 247 SDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNA 306
+ W D A+ F ++G D +Y
Sbjct: 377 NKQWED-------------------------------AIALFDLVVDTGV--PDVFTYGC 403
Query: 307 MASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACK 366
+ L + + + D+M+ G + + TC +L + E+ + EA+ LY
Sbjct: 404 LIHWLSKHHKVHEAVNLWDKMKEAGVKPSIVTCHSLLLGYCEKGCMDEALKLYSEMPGKG 463
Query: 367 NKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGE 426
P+ T L++ + K D ++ +NG + N ++ L V R+ E
Sbjct: 464 FPPNEVTYTTLMKGYIKKKAFDKAY--ALLNEMHQNGVSCGEYTYNILINGLCMVDRVCE 521
Query: 427 CNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIK 486
+++LK GF+ ++ + I AG A M G + S I
Sbjct: 522 VDEMLKRFVSEGFVPTTMTYNSIINGFVKAGMMGSALAMYRQMCEKGITPNIVTYTSFID 581
Query: 487 GHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDL 546
G+C D A M G A + +N +C + A F+ +++ L
Sbjct: 582 GYCRTNCCDLAVKLLIYM-RCNGIHPDIAAYNAFINMFCKQGNMSHALHFLVLLLKD-GL 639
Query: 547 KPWHTTYEELI---KNL 560
P T Y + KNL
Sbjct: 640 TPNVTVYNSFVTGYKNL 656
Score = 40.4 bits (93), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 62/324 (19%), Positives = 127/324 (39%), Gaps = 39/324 (12%)
Query: 263 VTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWK 322
VT++ + ++ K D KA ++G V E +YN + + L D + +
Sbjct: 469 VTYTTLMKGYIKKKAFD---KAYALLNEMHQNG-VSCGEYTYNILINGLCMVDRVCEVDE 524
Query: 323 VLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSV----------- 371
+L S+G+ T ++ F + M+ A+ +Y P++
Sbjct: 525 MLKRFVSEGFVPTTMTYNSIINGFVKAGMMGSALAMYRQMCEKGITPNIVTYTSFIDGYC 584
Query: 372 --NCCTFLLRKIVVSK----QLDMRLFSKVVRVFRENGN----------VLTDAML---- 411
NCC ++ ++ + D+ ++ + +F + GN +L D +
Sbjct: 585 RTNCCDLAVKLLIYMRCNGIHPDIAAYNAFINMFCKQGNMSHALHFLVLLLKDGLTPNVT 644
Query: 412 --NSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHM 469
NS + ++ M E +K +M + A + + + + S G A E M
Sbjct: 645 VYNSFVTGYKNLKMMAEASKFYYSMIKQRIAADTEIYTTLIDGFSKVGNVAFALELYSEM 704
Query: 470 EASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNR 529
A+ + DK + +L G C +GD+D A M + + ++L+N + +
Sbjct: 705 LANHNIPDDKTFTALTHGLCRSGDIDGAKRLLDDMTRLDVCPNT-VTYNMLINAHIRDGK 763
Query: 530 AIDACKFVHNCVREYDLKPWHTTY 553
+A + +H+ + + P TTY
Sbjct: 764 LQEAFQ-LHDKMLSSGVVPDDTTY 786
>gi|449462479|ref|XP_004148968.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
mitochondrial-like [Cucumis sativus]
Length = 580
Score = 57.4 bits (137), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 52/188 (27%), Positives = 84/188 (44%), Gaps = 15/188 (7%)
Query: 404 NVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSK-----IAFR-----L 453
NV+T N ++ L VGR E ++ + M+ G I + + + F L
Sbjct: 214 NVIT---YNIIVDGLCKVGREDEAKQLFEEMKTQGMIPNEMLDQGLQPDMVTFNVLIDTL 270
Query: 454 SSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHA 513
GK EA + + M SG + SLI+G C+ GDL+ A + F M K G
Sbjct: 271 CKEGKVIEAKKLLGVMIESGIVPDLVTYNSLIEGFCMVGDLNSARELFVSMPSK-GCEPD 329
Query: 514 GYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLL 573
+ ++L+N Y SK ++ ++N + +P TY+ L+K + + DA L
Sbjct: 330 VISYNVLINGY-SKTLKVEEAMKLYNEMLLVGKRPNVITYDSLLKGIFLAGKVDDAKKLF 388
Query: 574 CLMKDHGF 581
+MK HG
Sbjct: 389 SVMKAHGI 396
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 71/312 (22%), Positives = 131/312 (41%), Gaps = 13/312 (4%)
Query: 268 DLVKF--VVDKLGDEPK--KALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKV 323
D+V F ++D L E K +A ESG V D +YN++ ++ ++
Sbjct: 259 DMVTFNVLIDTLCKEGKVIEAKKLLGVMIESGIVP-DLVTYNSLIEGFCMVGDLNSAREL 317
Query: 324 LDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVV 383
M SKG E ++ + ++ +S+ V+EA+ LY + +P+V LL+ I +
Sbjct: 318 FVSMPSKGCEPDVISYNVLINGYSKTLKVEEAMKLYNEMLLVGKRPNVITYDSLLKGIFL 377
Query: 384 SKQLD--MRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIA 441
+ ++D +LFS V + +G L L + E K+ ++ F
Sbjct: 378 AGKVDDAKKLFS----VMKAHGIAENSYTYGIFLDGLCKNDCLFEAMKLFTELKSSNFKL 433
Query: 442 SSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCF 501
+ + L AGK + A E + + G + + +I G C G +DKA
Sbjct: 434 EIENLNCLIDGLCKAGKLETAWELFEKLSNEGHEPNVVTYTIMIHGFCREGQVDKANVLI 493
Query: 502 QKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLL 561
QKM E G + + L+ + N+ + + +H ++ D+ P T ++ L
Sbjct: 494 QKM-EANGCTPDIITYNTLMRGFYESNKLEEVVQLLHRMAQK-DVSPDAITCSIVVDMLS 551
Query: 562 VQRGFKDALSLL 573
+++ L LL
Sbjct: 552 KDEKYQECLHLL 563
>gi|39104565|dbj|BAC42187.2| unknown protein [Arabidopsis thaliana]
Length = 852
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 93/414 (22%), Positives = 165/414 (39%), Gaps = 61/414 (14%)
Query: 253 DVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLG 312
DV + N+ + VD D K+A + E SG +K D +Y + V
Sbjct: 330 DVTADMTSYNILLKTCCLAGRVDLAQDIYKEA----KRMESSGLLKLDAFTYCTIIKVFA 385
Query: 313 REDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVN 372
KV D+M+S G T ++ + +V++A L+E +A +P+
Sbjct: 386 DAKMWKWALKVKDDMKSVGVTPNTHTWSSLISACANAGLVEQANHLFEEMLASGCEPNSQ 445
Query: 373 CCTFLLRKIVVSKQLDMRLFSKVVRVFRE-NGNVLTDAMLNSVLKALISVGRMGECNKIL 431
C LL V + Q D + R+F+ G+ + +++ ++S GR N IL
Sbjct: 446 CFNILLHACVEACQYD-----RAFRLFQSWKGSSVNESLYAD---DIVSKGRTSSPN-IL 496
Query: 432 KAMEEGGFIASSN------MKSKIAFRLSSAGKKD----------EANEFMDHMEASGSD 475
K G + ++ + F+ ++A E MD M++ G
Sbjct: 497 KNNGPGSLVNRNSNSPYIQASKRFCFKPTTATYNILLKACGTDYYRGKELMDEMKSLGLS 556
Query: 476 VGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNT----YCSKNRAI 531
W +LI +GD++ A + M AG D++ T C++N+ +
Sbjct: 557 PNQITWSTLIDMCGGSGDVEGAVRILRTM------HSAGTRPDVVAYTTAIKICAENKCL 610
Query: 532 DACKFVHNCVREYDLKPWHTTYEELIK------NLLVQRGFKDALSLLCLMKDHGFPPFV 585
+ +R Y +KP TY L+K +LL R L++ M++ G+ P
Sbjct: 611 KLAFSLFEEMRRYQIKPNWVTYNTLLKARSKYGSLLEVR---QCLAIYQDMRNAGYKPN- 666
Query: 586 DPFIK---------YVSKSGTSDDAIAFLKGMTSKRFPSMSVVLCLFAAFFQAR 630
D F+K + ++G S D I+ +G + R +S+++ A Q R
Sbjct: 667 DHFLKELIEEWCEGVIQENGRSQDKISDQEGDNAGR--PVSLLIEKVATHMQER 718
>gi|357134934|ref|XP_003569069.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g48810-like [Brachypodium distachyon]
Length = 642
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 64/297 (21%), Positives = 112/297 (37%), Gaps = 38/297 (12%)
Query: 302 SSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEF 361
+SYNA+ L + + + V+DEM +G + ++G F
Sbjct: 228 ASYNAVVHALCGQFRMREVFLVVDEMVHRGLRPDTVAYTSIVGAF--------------- 272
Query: 362 AMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAM----------- 410
CK + C L R + +++ F+ +V+ F ++G V DA+
Sbjct: 273 ---CKARELRMACAILARMVTEGCVPNVQTFTVLVKGFFDDGKV-HDALGMWNWMVAEGW 328
Query: 411 ------LNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANE 464
N +++ L +G + + M + + S + S AG D A
Sbjct: 329 APSTISYNVLIRGLCHIGDLKRALFVFSCMGKSDCLPDVRTYSTLIDGFSKAGDLDVAMS 388
Query: 465 FMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTY 524
+ M +G ++ +++ C D+A + KM E + L+ +
Sbjct: 389 IWNDMTNAGCKPNVVVYTNMVDVLCKKVMFDQAENLIDKM-SLENCPPNTLTFNTLIRSL 447
Query: 525 CSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGF 581
C RA A H +R Y P TY EL+ L + +DAL +L M +HGF
Sbjct: 448 CDLGRAGRALNVFHG-MRRYGCPPNDRTYNELLHGLFREGNCEDALRMLTEMLNHGF 503
>gi|296081889|emb|CBI20894.3| unnamed protein product [Vitis vinifera]
Length = 608
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/210 (20%), Positives = 96/210 (45%), Gaps = 2/210 (0%)
Query: 297 VKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAV 356
++ D +YN +A+ + + ++ EM++ + TC ++G + + +KEA+
Sbjct: 244 LQPDAVTYNTIATAYAQNGEASQAEGIILEMQNSNVQPNERTCCIIIGGYCKEGKIKEAL 303
Query: 357 DLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLK 416
+P++ L++ + +D ++V+ + E G ++++
Sbjct: 304 QFVYRMKDLGLQPNLVVFNSLIKGFI--DAVDRDGVNEVLTLMEEFGVKPDVITFSTIMN 361
Query: 417 ALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDV 476
A + G M +C +I M + +++ S +A AG+ ++A E ++ M SG
Sbjct: 362 AWSAAGFMDKCREIFDDMVKARIQPDAHVYSILAKGYVRAGEPEKAEEILNAMIKSGFHP 421
Query: 477 GDKMWVSLIKGHCVAGDLDKAADCFQKMVE 506
++ ++I G C AG ++ A F+KM E
Sbjct: 422 NVVIFTTIINGWCSAGRMEYAIKIFEKMCE 451
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 69/346 (19%), Positives = 134/346 (38%), Gaps = 54/346 (15%)
Query: 340 VKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVF 399
K++ E+ +E + + + +KPS+ T LL + + K D ++
Sbjct: 76 TKLMNIMIEKGRPQEVQSILDSIIEGGHKPSLVTYTTLLAALTIQKHFDS--IHSIISQV 133
Query: 400 RENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKK 459
ENG N+V+ A G M E K M+E G +++ + + AG+
Sbjct: 134 EENGMEPDSIFFNAVINAFSESGNMQEAMKYFWKMKESGSKPTTSTFNTLIKGYGIAGEP 193
Query: 460 DEANEFMDHMEASGSDVGD-KMWVSLIKGHCVAGDLDKAADCFQKMVEK----------- 507
+E+ + ++ M + + + + L++ C ++ KA + KMV
Sbjct: 194 EESQKLLELMSQDENVRPNLRTYNVLVRAWCNKKNIMKAWNVVYKMVASGLQPDAVTYNT 253
Query: 508 ---------EGTSHAGYAIDL--------------LVNTYCSKNRAIDACKFVHNCVREY 544
E + G +++ ++ YC + + +A +FV+ +++
Sbjct: 254 IATAYAQNGEASQAEGIILEMQNSNVQPNERTCCIIIGGYCKEGKIKEALQFVYR-MKDL 312
Query: 545 DLKPWHTTYEELIKNLLVQRGFKDAL------SLLCLMKDHGFPPFVDPF---IKYVSKS 595
L+P + LIK GF DA+ +L LM++ G P V F + S +
Sbjct: 313 GLQPNLVVFNSLIK------GFIDAVDRDGVNEVLTLMEEFGVKPDVITFSTIMNAWSAA 366
Query: 596 GTSDDAIAFLKGMTSKRF-PSMSVVLCLFAAFFQARRHSEAQDLLS 640
G D M R P V L + +A +A+++L+
Sbjct: 367 GFMDKCREIFDDMVKARIQPDAHVYSILAKGYVRAGEPEKAEEILN 412
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 67/309 (21%), Positives = 124/309 (40%), Gaps = 8/309 (2%)
Query: 277 LGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEM 336
+ EP+++ + V+ + +YN + + I + W V+ +M + G + +
Sbjct: 189 IAGEPEESQKLLELMSQDENVRPNLRTYNVLVRAWCNKKNIMKAWNVVYKMVASGLQPDA 248
Query: 337 ETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVV 396
T + +++ +A + +P+ C ++ ++ L + V
Sbjct: 249 VTYNTIATAYAQNGEASQAEGIILEMQNSNVQPNERTCCIIIGGYCKEGKIKEAL--QFV 306
Query: 397 RVFRENGNVLTDAMLNSVLKALI-SVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSS 455
++ G + NS++K I +V R G N++L MEE G S I S+
Sbjct: 307 YRMKDLGLQPNLVVFNSLIKGFIDAVDRDG-VNEVLTLMEEFGVKPDVITFSTIMNAWSA 365
Query: 456 AGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGY 515
AG D+ E D M + ++ L KG+ AG+ +KA + M+ K G
Sbjct: 366 AGFMDKCREIFDDMVKARIQPDAHVYSILAKGYVRAGEPEKAEEILNAMI-KSGFHPNVV 424
Query: 516 AIDLLVNTYCSKNRAIDACK-FVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLC 574
++N +CS R A K F C E + P T+E LI R + +L
Sbjct: 425 IFTTIINGWCSAGRMEYAIKIFEKMC--ECGIAPNLKTFETLIWGYGEARQPWKSEEVLQ 482
Query: 575 LMKDHGFPP 583
+M++ P
Sbjct: 483 IMEEFNVQP 491
>gi|302826367|ref|XP_002994672.1| hypothetical protein SELMODRAFT_432576 [Selaginella moellendorffii]
gi|300137182|gb|EFJ04264.1| hypothetical protein SELMODRAFT_432576 [Selaginella moellendorffii]
Length = 816
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 72/316 (22%), Positives = 126/316 (39%), Gaps = 16/316 (5%)
Query: 303 SYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLY--- 359
+YN M + ++ ++ +M G+ ++ T V+ + + V+EA+ L+
Sbjct: 395 TYNVMIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNTVMDGLCKSSRVEEALLLFNEM 454
Query: 360 EFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFR------ENGNVLTDAMLNS 413
E N+ S N T +L SK K+ FR ++G+V ++
Sbjct: 455 ERLGCTPNRRSHN--TIILGLCQQSKIDQACQRGKLDEAFRLLKRMTDDGHVPDVVTYST 512
Query: 414 VLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASG 473
++ L S+ R+ + +L+ M + + ++ + L AG+ EA E +D M +SG
Sbjct: 513 LISGLCSIARVDDARHLLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVSSG 572
Query: 474 SDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDA 533
+ +L+ GHC AG ++A + MV + G + LV+ C NR +A
Sbjct: 573 QSPDVVTYNTLVHGHCRAGQTERARELLSDMVAR-GLAPNVVTYTALVSGLCKANRLPEA 631
Query: 534 CKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPP---FVDPFIK 590
C ++ P TY LI L L M G P
Sbjct: 632 CGVFAQ-MKSSGCAPNLFTYTALILGFCSAGQVDGGLKLFGEMVCAGISPDHVVYGTLAA 690
Query: 591 YVSKSGTSDDAIAFLK 606
+ KSG S A+ L+
Sbjct: 691 ELCKSGRSARALEILR 706
Score = 46.6 bits (109), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 55/261 (21%), Positives = 103/261 (39%), Gaps = 18/261 (6%)
Query: 412 NSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEA 471
N+++ L GR+ E ++L AM G + + AG+ + A E + M A
Sbjct: 546 NTLIHGLCKAGRIKEAREVLDAMVSSGQSPDVVTYNTLVHGHCRAGQTERARELLSDMVA 605
Query: 472 SGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAI 531
G + +L+ G C A L +A F +M + G + + L+ +CS +
Sbjct: 606 RGLAPNVVTYTALVSGLCKANRLPEACGVFAQM-KSSGCAPNLFTYTALILGFCSAGQVD 664
Query: 532 DACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLC----LMKDHGFPPFVDP 587
K V + P H Y L L AL +L ++ + V
Sbjct: 665 GGLKLFGEMVCA-GISPDHVVYGTLAAELCKSGRSARALEILREGRESLRSEAWGDEVYR 723
Query: 588 F-IKYVSKSGTSDDAIAFLKGMT-SKRFPSMSVVLCLFAAFFQARRHSEAQDLLSKCPRY 645
F + + ++G + A+ F++ M + P+ L A ++ + EA+ +L
Sbjct: 724 FAVDGLLEAGKMEMALGFVRDMVRGGQLPAPERCASLVAGLCKSGQGGEARAVLE----- 778
Query: 646 VRNHADVLNLLYSKKSGGDSA 666
++++L Y K+ G +A
Sbjct: 779 -----EIMDLAYGGKARGKAA 794
Score = 45.4 bits (106), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 53/241 (21%), Positives = 90/241 (37%), Gaps = 15/241 (6%)
Query: 412 NSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEA 471
N V+ L R+ E ++ + M E S + L+ AGK ++A +
Sbjct: 292 NIVILGLCQNDRIDEAVQMFEKMNERNVSPDSWSYGILIDGLAKAGKLNDARNLFQKLLH 351
Query: 472 SGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAI 531
SG + SLI G C+A D A + F M + G + +++++ C +
Sbjct: 352 SGVTPSTVAYTSLIHGLCMANSFDDARELFADM-NRRGCPPSPVTYNVMIDASCKRGMLE 410
Query: 532 DACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPP-------- 583
+AC + + + + P TY ++ L ++AL L M+ G P
Sbjct: 411 EACDLIKKMIEDGHV-PDVVTYNTVMDGLCKSSRVEEALLLFNEMERLGCTPNRRSHNTI 469
Query: 584 ----FVDPFIKYVSKSGTSDDAIAFLKGMTSK-RFPSMSVVLCLFAAFFQARRHSEAQDL 638
I + G D+A LK MT P + L + R +A+ L
Sbjct: 470 ILGLCQQSKIDQACQRGKLDEAFRLLKRMTDDGHVPDVVTYSTLISGLCSIARVDDARHL 529
Query: 639 L 639
L
Sbjct: 530 L 530
Score = 45.4 bits (106), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 58/240 (24%), Positives = 93/240 (38%), Gaps = 19/240 (7%)
Query: 382 VVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIA 441
V+ +D + ++V+REN LN +L+ S G++ + ++L+AM +
Sbjct: 186 VLVGLMDSGRIDEALQVYRENRREPCLVTLNVLLEGFCSRGQVDKARELLRAMPDEECAP 245
Query: 442 SSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSL------IKGHCVAGDLD 495
+ L AG+ +EA E S SL I G C +D
Sbjct: 246 DEVSYCTVLDGLCKAGRVEEAVRLFGDRELPSSSSSSSSPPSLRGYNIVILGLCQNDRID 305
Query: 496 KAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDA----CKFVHNCVREYDLKPWHT 551
+A F+KM E+ S ++ +L++ + DA K +H+ V P
Sbjct: 306 EAVQMFEKMNERN-VSPDSWSYGILIDGLAKAGKLNDARNLFQKLLHSGV-----TPSTV 359
Query: 552 TYEELIKNLLVQRGFKDALSLLCLMKDHGFPP---FVDPFIKYVSKSGTSDDAIAFLKGM 608
Y LI L + F DA L M G PP + I K G ++A +K M
Sbjct: 360 AYTSLIHGLCMANSFDDARELFADMNRRGCPPSPVTYNVMIDASCKRGMLEEACDLIKKM 419
>gi|125586172|gb|EAZ26836.1| hypothetical protein OsJ_10752 [Oryza sativa Japonica Group]
Length = 523
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 50/188 (26%), Positives = 74/188 (39%), Gaps = 2/188 (1%)
Query: 397 RVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSA 456
R R NG + ++ L G E + L M GF + S + L
Sbjct: 152 RALRPNGVTPDAQSYATAVQCLCRKGAPDEAKEALDEMVARGFRPTVATFSAVVGCLCKR 211
Query: 457 GKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYA 516
G+ A E D M A G + + + SLI G C G L++A D K+ E + Y
Sbjct: 212 GRVTRAMEVFDTMRAVGCEPTIRTYNSLIGGLCYVGRLEEALDLLNKLKESPKQTPDIYT 271
Query: 517 IDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLM 576
++++ +C R +A H+ VR L P TY L+ + A SLL M
Sbjct: 272 FTIVLDGFCKVGRTDEATPIFHDAVRN-GLSPTIFTYNALLNGHCKEGNPLKAYSLLMEM 330
Query: 577 -KDHGFPP 583
+ PP
Sbjct: 331 CGNAACPP 338
Score = 54.7 bits (130), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 78/377 (20%), Positives = 151/377 (40%), Gaps = 34/377 (9%)
Query: 252 DDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVL 311
D ++R L V+ ND++ + + + A+ FR +G V D SY L
Sbjct: 117 DLLQRDDGALTVSDYNDILSALA--MAGDHDSAVALFRALRPNG-VTPDAQSYATAVQCL 173
Query: 312 GREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSV 371
R+ D + LDEM ++G+ + T V+G +R V A+++++ A +P++
Sbjct: 174 CRKGAPDEAKEALDEMVARGFRPTVATFSAVVGCLCKRGRVTRAMEVFDTMRAVGCEPTI 233
Query: 372 NCCTFLLRKIVVSKQLD--MRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNK 429
L+ + +L+ + L +K+ ++ ++ T VL VGR E
Sbjct: 234 RTYNSLIGGLCYVGRLEEALDLLNKLKESPKQTPDIYT---FTIVLDGFCKVGRTDEATP 290
Query: 430 ILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLI-KGH 488
I G + + + G +A + M + + D++ S++ +
Sbjct: 291 IFHDAVRNGLSPTIFTYNALLNGHCKEGNPLKAYSLLMEMCGNAACPPDRISFSIVLQAL 350
Query: 489 CVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYC-----------------SKNRAI 531
AG+ A +++M E+ G G A+D L C ++ +
Sbjct: 351 LRAGETSAAWQAYKRM-ERAGFEADGRALDTLARGLCRQCAANVAALADAREALARGGEV 409
Query: 532 DACKFVHN--CVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPP---FVD 586
DA + R Y L+ Y ++++ L + +DAL +L L+ F P D
Sbjct: 410 DAAVSLLGEMARRGYALR--KRAYTDVVRALCERGRARDALRVLALVIARDFVPGRNAFD 467
Query: 587 PFIKYVSKSGTSDDAIA 603
+ +++ G DA+A
Sbjct: 468 ALLGELARQGRWPDAMA 484
>gi|53749325|gb|AAU90184.1| unkonwn protein [Oryza sativa Japonica Group]
gi|55168288|gb|AAV44154.1| unknown protein [Oryza sativa Japonica Group]
Length = 395
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 72/300 (24%), Positives = 118/300 (39%), Gaps = 41/300 (13%)
Query: 297 VKHDESSYNA-MASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEA 355
+ D +YN M + + +D + DEM +G + T ++ F E ++EA
Sbjct: 79 IHPDACTYNILMRAAVADSGSVDNACLLFDEMLQRGIAPTVVTFGTLVTAFCEAGRLEEA 138
Query: 356 VDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVL 415
+ E V+S Q ++R N +V S++
Sbjct: 139 FKVKE---------------------VMSLQYNIR----------PNAHVYA-----SLM 162
Query: 416 KALISVGRMGECNKILKAM-EEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGS 474
KAL G++ + +++ + M + S + +A L GKK E ++ M+ G
Sbjct: 163 KALCEKGKVDDAHRLKEEMVSNSEPLVDSGAYATLARALFRLGKKGEVVSLLEEMKEKGI 222
Query: 475 DVGDKMWVSLIKGHCV-AGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDA 533
VG ++ S+I G C GDLD A M +K G + + LV C R DA
Sbjct: 223 KVGREVHNSMIAGFCEDEGDLDAAFAALDDM-QKGGCKPDSVSYNTLVGGLCKMGRWRDA 281
Query: 534 CKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPFIKYVS 593
+ V + R +P TY L + GF +A + M GF P D K+V+
Sbjct: 282 SELVEDMPRR-GCRPDVVTYRRLFDGICDAGGFSEARRVFNEMVFKGFAPSKDGVRKFVA 340
>gi|14532710|gb|AAK64156.1| unknown protein [Arabidopsis thaliana]
Length = 974
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 56/234 (23%), Positives = 97/234 (41%), Gaps = 6/234 (2%)
Query: 412 NSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEA 471
+++K + R G+ ++LK M+E G + + LS A + DEA F+ M
Sbjct: 456 TTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNSLIIGLSKAKRMDEARSFLVEMVE 515
Query: 472 SGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAI 531
+G + + I G+ A + +AD + K + + G L+N YC K + I
Sbjct: 516 NGLKPNAFTYGAFISGYIEASEF-ASADKYVKEMRECGVLPNKVLCTGLINEYCKKGKVI 574
Query: 532 DACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPF--- 588
+AC + V + L TY L+ L DA + M+ G P V +
Sbjct: 575 EACSAYRSMVDQGILGD-AKTYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVL 633
Query: 589 IKYVSKSGTSDDAIAFLKGMTSKRF-PSMSVVLCLFAAFFQARRHSEAQDLLSK 641
I SK G A + M + P++ + L F ++ +A++LL +
Sbjct: 634 INGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDE 687
Score = 42.4 bits (98), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 89/450 (19%), Positives = 167/450 (37%), Gaps = 53/450 (11%)
Query: 238 ASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVV-DKLGDEPKKALIFFRWAEESGF 296
++ I +++ + W D + +L++ + ++V V+ K D+P K L FF W +
Sbjct: 35 SAEIAGILKQENWRDTLVSS--NLSIEINPEVVLSVLRSKRVDDPSKLLSFFNWVDSQKV 92
Query: 297 VKHDESSYNAMASVLGR-----------EDCIDRFWKVLDEMRSKGYEMEMETCVK---- 341
+ S++ +A L E I+R W V E+ S E K
Sbjct: 93 TEQKLDSFSFLALDLCNFGSFEKALSVVERMIERNWPVA-EVWSSIVRCSQEFVGKSDDG 151
Query: 342 -----VLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVV 396
+ + + ++EAV ++ +M + P ++ C LL ++ +LD LF V
Sbjct: 152 VLFGILFDGYIAKEYIEEAVFVFSSSMGLELVPRLSRCKVLLDALLRWNRLD--LFWDVY 209
Query: 397 RVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFR---- 452
+ E V + ++ A G + +L E+ A+ N+ + +
Sbjct: 210 KGMVERNVVFDVKTYHMLIIAHCRAGNVQLGKDVLFKTEKEFRTATLNVDGALKLKESMI 269
Query: 453 -----------------LSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLD 495
L + ++A + M++ G + + + LI G + D
Sbjct: 270 CKGLVPLKYTYDVLIDGLCKIKRLEDAKSLLVEMDSLGVSLDNHTYSLLIDGLLKGRNAD 329
Query: 496 KAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEE 555
A +MV G + Y D + SK ++ K + + + L P Y
Sbjct: 330 AAKGLVHEMV-SHGINIKPYMYDCCICVM-SKEGVMEKAKALFDGMIASGLIPQAQAYAS 387
Query: 556 LIKNLLVQRGFKDALSLLCLMKDHGF---PPFVDPFIKYVSKSGTSDDAIAFLKGM-TSK 611
LI+ ++ + LL MK P +K + SG D A +K M S
Sbjct: 388 LIEGYCREKNVRQGYELLVEMKKRNIVISPYTYGTVVKGMCSSGDLDGAYNIVKEMIASG 447
Query: 612 RFPSMSVVLCLFAAFFQARRHSEAQDLLSK 641
P++ + L F Q R +A +L +
Sbjct: 448 CRPNVVIYTTLIKTFLQNSRFGDAMRVLKE 477
Score = 41.6 bits (96), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 49/216 (22%), Positives = 84/216 (38%), Gaps = 12/216 (5%)
Query: 322 KVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKI 381
K + EMR G C ++ + ++ V EA Y + T L+ +
Sbjct: 543 KYVKEMRECGVLPNKVLCTGLINEYCKKGKVIEACSAYRSMVDQGILGDAKTYTVLMNGL 602
Query: 382 VVSKQLDMRLFSKVVRVFRE--NGNVLTDAMLNSVL-KALISVGRMGECNKILKAMEEGG 438
+ ++D +FRE + D VL +G M + + I M E G
Sbjct: 603 FKNDKVD-----DAEEIFREMRGKGIAPDVFSYGVLINGFSKLGNMQKASSIFDEMVEEG 657
Query: 439 FIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAA 498
+ + + + +G+ ++A E +D M G + ++I G+C +GDL +A
Sbjct: 658 LTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTIIDGYCKSGDLAEAF 717
Query: 499 DCFQKMVEKEGTSHAGYAIDLLVNTYCSKN---RAI 531
F +M K G + LV+ C N RAI
Sbjct: 718 RLFDEMKLK-GLVPDSFVYTTLVDGCCRLNDVERAI 752
>gi|449505568|ref|XP_004162510.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22670,
mitochondrial-like [Cucumis sativus]
Length = 614
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 74/359 (20%), Positives = 145/359 (40%), Gaps = 16/359 (4%)
Query: 229 SIDNSIEKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFF 288
+ +N ++K+++ + S ++V L SN LV ++ + ++ +A F
Sbjct: 161 TCNNEVDKISTMLENRYPSP---ENVAEALNGKAYRVSNTLVAQLLKRFHNDWIQAYGIF 217
Query: 289 RWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSE 348
+WA++ +H SYN+M +LG+ W+++DEM + +ET KV+ R +
Sbjct: 218 KWAKDQIPYRHSPESYNSMVDILGKAKNFRLMWELVDEMNHLAGSVSLETMSKVIRRLAR 277
Query: 349 RNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVL-- 406
+EA+ + L+ +V ++ VFRE +
Sbjct: 278 AGRHQEAIHAFRNIEKYGISTDTTAMNVLMDALVKEASVE-----DAHNVFRELKCSIPF 332
Query: 407 TDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKD--EANE 464
A N ++ ++ E KI+ +E+ G ++ S AF + +KD ++
Sbjct: 333 NLASFNVLIHGYCKAKKLDEAWKIMGEVEKSGL--EPDVISYTAFIEAHCREKDFRNVDK 390
Query: 465 FMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTY 524
+ ME G + ++ A +++A ++KM +KEG L+
Sbjct: 391 VLVQMEHKGCKPNVITFTIIMHALGKAKQINEALKVYEKM-KKEGCVPDSSFYSSLIFIL 449
Query: 525 CSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPP 583
R D + V + + + + P TY LI + AL+LL M++ P
Sbjct: 450 GKAGRLTDVKEIVED-MEKQGVTPDVLTYNTLISCACAHSQEETALTLLLKMEEVSCKP 507
Score = 47.4 bits (111), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 86/434 (19%), Positives = 167/434 (38%), Gaps = 50/434 (11%)
Query: 110 KFSDVNDISKQLELSGVVFTHEMVLKVLKNLESSPDEARRFFNWVLEKESERLSSKTYNL 169
++ ++++ L ++ +V ++LK + +A F W ++ R S ++YN
Sbjct: 176 RYPSPENVAEALNGKAYRVSNTLVAQLLKRFHNDWIQAYGIFKWAKDQIPYRHSPESYNS 235
Query: 170 MLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRNKMTEKFEKEGLESD-LEKLKGIFATG 228
M+ I+G + W LVD M V+ +K+ + + G + + + I G
Sbjct: 236 MVDILGKAKNFRLMWELVDEMNHLAGSVSLETMSKVIRRLARAGRHQEAIHAFRNIEKYG 295
Query: 229 -SIDNSIEKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIF 287
S D + V + + + +D R+L + +L F V LI
Sbjct: 296 ISTDTTAMNV---LMDALVKEASVEDAHNVFRELKCSIPFNLASFNV----------LIH 342
Query: 288 FRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFS 347
G+ K + +D WK++ E+ G E ++ + +
Sbjct: 343 -------GYCKAKK---------------LDEAWKIMGEVEKSGLEPDVISYTAFIEAHC 380
Query: 348 E----RNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENG 403
RN+ K V + C KP+V T ++ + +KQ++ L KV ++ G
Sbjct: 381 REKDFRNVDKVLVQMEH--KGC--KPNVITFTIIMHALGKAKQINEAL--KVYEKMKKEG 434
Query: 404 NVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEAN 463
V + +S++ L GR+ + +I++ ME+ G + + + +++ A
Sbjct: 435 CVPDSSFYSSLIFILGKAGRLTDVKEIVEDMEKQGVTPDVLTYNTLISCACAHSQEETAL 494
Query: 464 EFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAG-YAIDLLVN 522
+ ME K + L+K C + M + + + AG YAI LV
Sbjct: 495 TLLLKMEEVSCKPDLKTYHPLLKMFCRKKRMKVLKFLLDHMFKNDVSIEAGTYAI--LVR 552
Query: 523 TYCSKNRAIDACKF 536
C + AC F
Sbjct: 553 GLCENGKLHLACSF 566
>gi|302799124|ref|XP_002981321.1| hypothetical protein SELMODRAFT_114398 [Selaginella moellendorffii]
gi|300150861|gb|EFJ17509.1| hypothetical protein SELMODRAFT_114398 [Selaginella moellendorffii]
Length = 457
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 70/349 (20%), Positives = 133/349 (38%), Gaps = 12/349 (3%)
Query: 285 LIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLG 344
+ FF+WA H SYN + VL + D + ++M + G T +L
Sbjct: 1 MAFFQWAGSQVHYNHGTLSYNYLLEVLAKSGRCDHVYGTYNDMLAAGCVPNTYTYGYLLR 60
Query: 345 RFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGN 404
+ +EA ++ A P+V + L+ + +++D ++++ + G+
Sbjct: 61 SLCQAQRFEEARSVFRGMAAQGCSPNVFSYSILIAGLCRGQKVDEA--AELLNEMIDGGH 118
Query: 405 VLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANE 464
S+L L +G++ E + M G + + + S G EA
Sbjct: 119 QPNVVTYGSLLSGLCKMGKLKEAVDLFSRMVYRGCPPDGVVYNVLIDGFSKKGDMGEAYR 178
Query: 465 FMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTY 524
+ M G + SL+ G G+ + F+ M+ ++G + + L++ +
Sbjct: 179 LFEEMLEKGCIPTVFTYNSLLSGFSRKGEFGRVQSLFKDML-RQGCVPNIFTFNNLLDGF 237
Query: 525 CSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPF 584
C ++A + +R P +Y LI+ + + +A LL M G P
Sbjct: 238 CKMGDMVEAHRLFLE-MRSLGCPPDVVSYNTLIRGMCSKGKPHEAQRLLREMIRSGVGPD 296
Query: 585 V---DPFIKYVSKSGTSDDAIAFL-----KGMTSKRFPSMSVVLCLFAA 625
+ + I SKSG D AI G+ F +++ CL A
Sbjct: 297 IVSYNILIDGYSKSGALDHAIKLFYEIPKSGLEPDAFSYSTIIDCLCRA 345
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 84/446 (18%), Positives = 165/446 (36%), Gaps = 19/446 (4%)
Query: 150 FFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRNKMTEKF 209
FF W + + +YN +L ++ G +G + M G ++ +
Sbjct: 3 FFQWAGSQVHYNHGTLSYNYLLEVLAKSGRCDHVYGTYNDMLAAGCVPNTYTYGYLLRSL 62
Query: 210 -EKEGLESDLEKLKGIFATGSIDN--SIEKVASRICKVVRSDIWGDDVERQL---RDLNV 263
+ + E +G+ A G N S + + +C+ + D + + + NV
Sbjct: 63 CQAQRFEEARSVFRGMAAQGCSPNVFSYSILIAGLCRGQKVDEAAELLNEMIDGGHQPNV 122
Query: 264 TFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKV 323
L+ + K+G + +F R D YN + ++ + +++
Sbjct: 123 VTYGSLLSGLC-KMGKLKEAVDLFSRMVYRG--CPPDGVVYNVLIDGFSKKGDMGEAYRL 179
Query: 324 LDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVV 383
+EM KG + T +L FS + L++ + P++ LL
Sbjct: 180 FEEMLEKGCIPTVFTYNSLLSGFSRKGEFGRVQSLFKDMLRQGCVPNIFTFNNLLDGFC- 238
Query: 384 SKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGF---I 440
K DM ++ R G N++++ + S G+ E ++L+ M G I
Sbjct: 239 -KMGDMVEAHRLFLEMRSLGCPPDVVSYNTLIRGMCSKGKPHEAQRLLREMIRSGVGPDI 297
Query: 441 ASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADC 500
S N+ + S +G D A + + SG + + ++I C AG + A
Sbjct: 298 VSYNI---LIDGYSKSGALDHAIKLFYEIPKSGLEPDAFSYSTIIDCLCRAGKVGAAFVV 354
Query: 501 FQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNL 560
F+ M+ A I L++ C R ++C+ V+ ++ P Y L+ L
Sbjct: 355 FKDMIANGSAPDAAVVIPLVIGL-CRGERLTESCELFQAMVK-FECVPLIPEYNLLMYKL 412
Query: 561 LVQRGFKDALSLLCLMKDHGFPPFVD 586
+ D + + + GF P V+
Sbjct: 413 CKAKRSDDVCEIFHELTERGFSPDVE 438
>gi|302788594|ref|XP_002976066.1| hypothetical protein SELMODRAFT_53130 [Selaginella moellendorffii]
gi|300156342|gb|EFJ22971.1| hypothetical protein SELMODRAFT_53130 [Selaginella moellendorffii]
Length = 440
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 57/233 (24%), Positives = 93/233 (39%), Gaps = 8/233 (3%)
Query: 412 NSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEA 471
N++L VG + E KI + GF+ + + A K DEA + M +
Sbjct: 49 NTLLHGFCKVGELDEALKIFDGAVKRGFVPDVVTYNALINGFCKADKLDEAQRILQRMVS 108
Query: 472 SGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAI 531
+ SL+ G C G +D+A + ++ +G S L++ C + R +
Sbjct: 109 ENLVPDVVTYNSLVNGLCKNGRVDEA----RMLIVDKGFSPNVITYSTLISGLCRELRGV 164
Query: 532 DACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPP---FVDPF 588
+ V + +P TY LI LL + +A L + HG P F
Sbjct: 165 SEALKLFGSVLKQGYEPEVPTYNILIDGLLKEDRVNEAFELFSGLVKHGLEPDAITYTVF 224
Query: 589 IKYVSKSGTSDDAIAFLKGMTSKR-FPSMSVVLCLFAAFFQARRHSEAQDLLS 640
I + K+G +DA+ LK M K P + + + +R EA+ LLS
Sbjct: 225 IDGLCKAGRVEDALLMLKDMDEKGCVPDVVSHNAVINGLCKEKRVDEAEVLLS 277
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 62/259 (23%), Positives = 103/259 (39%), Gaps = 15/259 (5%)
Query: 412 NSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEA 471
N++L L + GRM + + + M + G+ + + G+ DEA + D
Sbjct: 14 NALLSGLCNGGRMSDAQALYERMIKAGYSPDVVTYNTLLHGFCKVGELDEALKIFDGAVK 73
Query: 472 SGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAI 531
G + +LI G C A LD+A Q+MV + + LVN C KN +
Sbjct: 74 RGFVPDVVTYNALINGFCKADKLDEAQRILQRMVSENLVPDV-VTYNSLVNGLC-KNGRV 131
Query: 532 DACKFVHNCVREYDLKPWHTTYEELIKNLLVQ-RGFKDALSLLCLMKDHGFPPFVDPF-- 588
D + + + + P TY LI L + RG +AL L + G+ P V +
Sbjct: 132 DEARML---IVDKGFSPNVITYSTLISGLCRELRGVSEALKLFGSVLKQGYEPEVPTYNI 188
Query: 589 -IKYVSKSGTSDDAIAFLKGMTSKRFPSMSVVLCLFA-AFFQARRHSEAQDLL-----SK 641
I + K ++A G+ ++ +F +A R +A +L
Sbjct: 189 LIDGLLKEDRVNEAFELFSGLVKHGLEPDAITYTVFIDGLCKAGRVEDALLMLKDMDEKG 248
Query: 642 CPRYVRNHADVLNLLYSKK 660
C V +H V+N L +K
Sbjct: 249 CVPDVVSHNAVINGLCKEK 267
Score = 45.8 bits (107), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 51/212 (24%), Positives = 86/212 (40%), Gaps = 10/212 (4%)
Query: 434 MEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGD 493
M + GF + + + L + G+ +A + M +G + +L+ G C G+
Sbjct: 1 MRKHGFWPNRITYNALLSGLCNGGRMSDAQALYERMIKAGYSPDVVTYNTLLHGFCKVGE 60
Query: 494 LDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTY 553
LD+A F V K G + L+N +C ++ +A + + V E +L P TY
Sbjct: 61 LDEALKIFDGAV-KRGFVPDVVTYNALINGFCKADKLDEAQRILQRMVSE-NLVPDVVTY 118
Query: 554 EELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPFIKYVSK-----SGTSDDAIAFLKGM 608
L+ N L + G D +L + D GF P V + +S G S+ F +
Sbjct: 119 NSLV-NGLCKNGRVDEARMLIV--DKGFSPNVITYSTLISGLCRELRGVSEALKLFGSVL 175
Query: 609 TSKRFPSMSVVLCLFAAFFQARRHSEAQDLLS 640
P + L + R +EA +L S
Sbjct: 176 KQGYEPEVPTYNILIDGLLKEDRVNEAFELFS 207
Score = 45.4 bits (106), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 59/224 (26%), Positives = 88/224 (39%), Gaps = 15/224 (6%)
Query: 294 SGFVKH----DESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSER 349
SG VKH D +Y L + ++ +L +M KG ++ + V+ +
Sbjct: 207 SGLVKHGLEPDAITYTVFIDGLCKAGRVEDALLMLKDMDEKGCVPDVVSHNAVINGLCKE 266
Query: 350 NMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRE------NG 403
V EA L A P N +F ++ Q + K + F+E
Sbjct: 267 KRVDEAEVLLSGMEAKGCSP--NAISF---NTLICGQCRAGKWKKAMTTFKEMLKRGVKP 321
Query: 404 NVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEAN 463
V+T +L L GR+ E + AM E G + S + L AGK D+A
Sbjct: 322 TVVTYNILVDGLCKARQEGRIKEAITLFDAMIEKGRVPDVVTYSALIDGLGKAGKLDDAR 381
Query: 464 EFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEK 507
+ MEA G + SLI G C +D+A + F MVEK
Sbjct: 382 RLLGAMEAKGCIPNVYTYNSLISGLCGLEKVDEALELFVAMVEK 425
>gi|449442429|ref|XP_004138984.1| PREDICTED: pentatricopeptide repeat-containing protein At3g02650,
mitochondrial-like [Cucumis sativus]
gi|449477884|ref|XP_004155152.1| PREDICTED: pentatricopeptide repeat-containing protein At3g02650,
mitochondrial-like [Cucumis sativus]
Length = 479
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 84/338 (24%), Positives = 132/338 (39%), Gaps = 43/338 (12%)
Query: 256 RQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGRED 315
+Q LN N L+ F KLG + K AL E G V + ES Y + + L R
Sbjct: 129 KQTSLLNAEILNQLIAFF-SKLG-KGKAALEVLNSYEVLGCVPNAESYYFTVEA-LCRRS 185
Query: 316 CIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCT 375
D W V ++M G E K++ F + N K A +Y A
Sbjct: 186 SYDLAWPVCEKMLDSGSMPESNRVGKIISLFCKGNKAKNAHSVYLLAK------------ 233
Query: 376 FLLRKIVVSKQLDMRLFSKVVRVFRENGNV-LTDAMLNSVLKALISVGRMGECNKILKAM 434
K V Q M + + + R++ V L MLN GE + +K
Sbjct: 234 ---EKHVNLPQCYMNIL--IHSLCRDDETVKLALEMLNDF--------STGERRRAIKPY 280
Query: 435 EEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDL 494
E + L +A + M A G G+ + ++I G+ AGDL
Sbjct: 281 ME------------VIRSLCRIKDTSKAKTLLQKMIAEGPPPGNAAFNAVICGYSKAGDL 328
Query: 495 DKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYE 554
++A + K++E G Y+ +++ Y + +A + + +++ K H TY
Sbjct: 329 EEAMELI-KLMESRGLKPDVYSYTAVISGYAKGGQMKEAYEVLDEAKKKHA-KLSHITYH 386
Query: 555 ELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPFIKYV 592
LI+N + AL LL MK+ G P VD + K +
Sbjct: 387 TLIRNHCKLEEYDSALKLLSEMKNFGVQPNVDEYNKLI 424
>gi|18424537|ref|NP_568948.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75170898|sp|Q9FIT7.1|PP442_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At5g61990, mitochondrial; Flags: Precursor
gi|10176917|dbj|BAB10161.1| unnamed protein product [Arabidopsis thaliana]
gi|332010163|gb|AED97546.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 974
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 56/234 (23%), Positives = 97/234 (41%), Gaps = 6/234 (2%)
Query: 412 NSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEA 471
+++K + R G+ ++LK M+E G + + LS A + DEA F+ M
Sbjct: 456 TTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNSLIIGLSKAKRMDEARSFLVEMVE 515
Query: 472 SGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAI 531
+G + + I G+ A + +AD + K + + G L+N YC K + I
Sbjct: 516 NGLKPNAFTYGAFISGYIEASEF-ASADKYVKEMRECGVLPNKVLCTGLINEYCKKGKVI 574
Query: 532 DACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPF--- 588
+AC + V + L TY L+ L DA + M+ G P V +
Sbjct: 575 EACSAYRSMVDQGILGD-AKTYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVL 633
Query: 589 IKYVSKSGTSDDAIAFLKGMTSKRF-PSMSVVLCLFAAFFQARRHSEAQDLLSK 641
I SK G A + M + P++ + L F ++ +A++LL +
Sbjct: 634 INGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDE 687
Score = 42.4 bits (98), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 89/450 (19%), Positives = 167/450 (37%), Gaps = 53/450 (11%)
Query: 238 ASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVV-DKLGDEPKKALIFFRWAEESGF 296
++ I +++ + W D + +L++ + ++V V+ K D+P K L FF W +
Sbjct: 35 SAEIAGILKQENWRDTLVSS--NLSIEINPEVVLSVLRSKRVDDPSKLLSFFNWVDSQKV 92
Query: 297 VKHDESSYNAMASVLGR-----------EDCIDRFWKVLDEMRSKGYEMEMETCVK---- 341
+ S++ +A L E I+R W V E+ S E K
Sbjct: 93 TEQKLDSFSFLALDLCNFGSFEKALSVVERMIERNWPVA-EVWSSIVRCSQEFVGKSDDG 151
Query: 342 -----VLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVV 396
+ + + ++EAV ++ +M + P ++ C LL ++ +LD LF V
Sbjct: 152 VLFGILFDGYIAKGYIEEAVFVFSSSMGLELVPRLSRCKVLLDALLRWNRLD--LFWDVY 209
Query: 397 RVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFR---- 452
+ E V + ++ A G + +L E+ A+ N+ + +
Sbjct: 210 KGMVERNVVFDVKTYHMLIIAHCRAGNVQLGKDVLFKTEKEFRTATLNVDGALKLKESMI 269
Query: 453 -----------------LSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLD 495
L + ++A + M++ G + + + LI G + D
Sbjct: 270 CKGLVPLKYTYDVLIDGLCKIKRLEDAKSLLVEMDSLGVSLDNHTYSLLIDGLLKGRNAD 329
Query: 496 KAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEE 555
A +MV G + Y D + SK ++ K + + + L P Y
Sbjct: 330 AAKGLVHEMV-SHGINIKPYMYDCCICVM-SKEGVMEKAKALFDGMIASGLIPQAQAYAS 387
Query: 556 LIKNLLVQRGFKDALSLLCLMKDHGF---PPFVDPFIKYVSKSGTSDDAIAFLKGM-TSK 611
LI+ ++ + LL MK P +K + SG D A +K M S
Sbjct: 388 LIEGYCREKNVRQGYELLVEMKKRNIVISPYTYGTVVKGMCSSGDLDGAYNIVKEMIASG 447
Query: 612 RFPSMSVVLCLFAAFFQARRHSEAQDLLSK 641
P++ + L F Q R +A +L +
Sbjct: 448 CRPNVVIYTTLIKTFLQNSRFGDAMRVLKE 477
Score = 41.6 bits (96), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 49/216 (22%), Positives = 84/216 (38%), Gaps = 12/216 (5%)
Query: 322 KVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKI 381
K + EMR G C ++ + ++ V EA Y + T L+ +
Sbjct: 543 KYVKEMRECGVLPNKVLCTGLINEYCKKGKVIEACSAYRSMVDQGILGDAKTYTVLMNGL 602
Query: 382 VVSKQLDMRLFSKVVRVFRE--NGNVLTDAMLNSVL-KALISVGRMGECNKILKAMEEGG 438
+ ++D +FRE + D VL +G M + + I M E G
Sbjct: 603 FKNDKVD-----DAEEIFREMRGKGIAPDVFSYGVLINGFSKLGNMQKASSIFDEMVEEG 657
Query: 439 FIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAA 498
+ + + + +G+ ++A E +D M G + ++I G+C +GDL +A
Sbjct: 658 LTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTIIDGYCKSGDLAEAF 717
Query: 499 DCFQKMVEKEGTSHAGYAIDLLVNTYCSKN---RAI 531
F +M K G + LV+ C N RAI
Sbjct: 718 RLFDEMKLK-GLVPDSFVYTTLVDGCCRLNDVERAI 752
>gi|357148528|ref|XP_003574800.1| PREDICTED: pentatricopeptide repeat-containing protein At5g18390,
mitochondrial-like [Brachypodium distachyon]
Length = 464
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 81/378 (21%), Positives = 129/378 (34%), Gaps = 44/378 (11%)
Query: 241 ICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGD-EPKKALIFFRWAEESGFVKH 299
+ +VR D + + +LR L F DL V+ EP A F W
Sbjct: 57 LSTIVRRDFYLERTLNRLR-LPSPFPPDLALRVIKAAAPAEPLHAARFLAWLRAKPNFSP 115
Query: 300 DESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLY 359
++A+ L R W +MR+ G + T V+ + + ++AV+++
Sbjct: 116 SAEHFDALLLPLARARLFTHLWTQASDMRALGLPLSPATFSAVISSYGHSRLPEQAVEVF 175
Query: 360 EFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALI 419
P C T + N++L AL
Sbjct: 176 ------NRLPHFGCPQ-------------------------------TTEVYNALLDALC 198
Query: 420 SVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDK 479
S G K+L+ M G S + ++GK EA F+D M + G +
Sbjct: 199 SNGNFAGAYKLLRRMARKGVAPDRATFSTLVDAWCASGKLREAQAFLDDMASRGFRPPVR 258
Query: 480 MWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHN 539
L+ G AG L++ A F KEG + L C A + +
Sbjct: 259 GRDLLVDGLVRAGRLEE-AKAFAVRFTKEGVLPDVATFNSLAQALCDAGDVKFAVGLLAD 317
Query: 540 CVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHG---FPPFVDPFIKYVSKSG 596
L P +TY+ ++ + ++A L + G FP +K + K+G
Sbjct: 318 ASSR-GLCPDISTYKVMLPAVAKAGQIEEAFRLFYAAVEDGHRPFPSLYAAIVKALCKAG 376
Query: 597 TSDDAIAFLKGMTSKRFP 614
DA AF M SK P
Sbjct: 377 RFGDAFAFFGDMKSKGHP 394
>gi|37572999|dbj|BAC98691.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
gi|222640519|gb|EEE68651.1| hypothetical protein OsJ_27230 [Oryza sativa Japonica Group]
Length = 691
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 47/187 (25%), Positives = 71/187 (37%), Gaps = 2/187 (1%)
Query: 412 NSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEA 471
N +L L GRMGE + +L M + S + LS G
Sbjct: 274 NVLLSGLCRAGRMGETSALLDEMASQKMVPDGFTYSILFDGLSRNGDSKAMLSLFGKYLK 333
Query: 472 SGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAI 531
+G +GD L+ G C G + A + Q +V G + L+N YC +
Sbjct: 334 NGVTIGDYTCSILLNGLCKDGKVSIAEEVLQSLVNA-GLVPTRVIYNTLINGYCQTGE-L 391
Query: 532 DACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPFIKY 591
+ ++ +KP H TY LI L +A LL M+D+G P V+ F
Sbjct: 392 EGAFSTFGQMKSRHIKPDHITYNALINGLCKAERITNAQDLLMEMQDNGVNPTVETFNTL 451
Query: 592 VSKSGTS 598
+ G +
Sbjct: 452 IDAYGRT 458
Score = 48.5 bits (114), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 56/258 (21%), Positives = 109/258 (42%), Gaps = 6/258 (2%)
Query: 399 FRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGK 458
++NG T N+++ A G++ +C +L M+E G + I GK
Sbjct: 436 MQDNGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAFCKNGK 495
Query: 459 KDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAID 518
EA +D M +++ ++I + G D+A +KM + G S + +
Sbjct: 496 IPEAVAILDDMFHKDVLPNAQVYNAIIDAYVEHGPNDQAFILVEKM-KSNGISPSIVTYN 554
Query: 519 LLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKD 578
LL+ C++++ +A + + N + + L P +Y LI + AL L M
Sbjct: 555 LLIKGLCNQSQISEAEEII-NSLSNHRLIPDAVSYNTLISACCYRGNIDKALDLQQRMHK 613
Query: 579 HGFPPFVDPFIKYVSKSGTSD--DAIAFL--KGMTSKRFPSMSVVLCLFAAFFQARRHSE 634
+G V + + +S G + + + +L K M + PS ++ + A+ + +
Sbjct: 614 YGIKSTVRTYHQLISGLGGAGRLNEMEYLYQKMMQNNVVPSNAIHNIMVEAYSKYGNEIK 673
Query: 635 AQDLLSKCPRYVRNHADV 652
A+DL + + NH D
Sbjct: 674 AEDLRKEMLQKRNNHDDT 691
Score = 39.3 bits (90), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 38/205 (18%), Positives = 82/205 (40%), Gaps = 2/205 (0%)
Query: 303 SYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFA 362
++N + GR +++ + VL EM+ G + + + ++ F + + EAV + +
Sbjct: 447 TFNTLIDAYGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAFCKNGKIPEAVAILDDM 506
Query: 363 MACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVG 422
P+ ++ V D +V + NG + N ++K L +
Sbjct: 507 FHKDVLPNAQVYNAIIDAYVEHGPNDQAFI--LVEKMKSNGISPSIVTYNLLIKGLCNQS 564
Query: 423 RMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWV 482
++ E +I+ ++ I + + + G D+A + M G + +
Sbjct: 565 QISEAEEIINSLSNHRLIPDAVSYNTLISACCYRGNIDKALDLQQRMHKYGIKSTVRTYH 624
Query: 483 SLIKGHCVAGDLDKAADCFQKMVEK 507
LI G AG L++ +QKM++
Sbjct: 625 QLISGLGGAGRLNEMEYLYQKMMQN 649
>gi|410109887|gb|AFV61023.1| pentatricopeptide repeat-containing protein 11, partial [Junellia
succulentifolia]
Length = 429
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 63/292 (21%), Positives = 112/292 (38%), Gaps = 5/292 (1%)
Query: 266 SNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLD 325
+ L++ VV + G A +F E G + D ++ + + + +
Sbjct: 36 AKTLIQIVVSRKGKGSASA-VFAAILETKGTQRSDIYVFSGIITAYLESGFLRDAIECYR 94
Query: 326 EMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSK 385
+ + + +TC KVL + K YE ++ C S+ L+ K
Sbjct: 95 LTKEHKFRVPFDTCRKVLEHLMKLKYFKLVWGFYEESLECGYPASLYFFNILMHSFC--K 152
Query: 386 QLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNM 445
+ ++RL V + G + N+++ I +G + E ++ KAM+ G
Sbjct: 153 EGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLNEXFRLKKAMQASGVQPDVYT 212
Query: 446 KSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMV 505
S + L K D+ NE D M G + +LI GHC G +D A + +++M+
Sbjct: 213 YSVLINGLCKESKMDDXNELFDEMLDXGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQML 272
Query: 506 EKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELI 557
+ S + L+ C K A + + LKP TY LI
Sbjct: 273 S-QSLSPDLVTYNTLIYGLCKKGDLKQAQDLIDEMSMK-GLKPDKITYTTLI 322
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 97/450 (21%), Positives = 177/450 (39%), Gaps = 44/450 (9%)
Query: 150 FFNWVLEKESE--RLSSKTYNLMLRIVGVHGLVQEFWGLVD-VMKKKGYGVASHVRNKMT 206
FF W+ + R + ++Y M+ + H ++ E L+ V+ +KG G AS V +
Sbjct: 1 FFTWLSSPTNSTFRHTLQSYCTMIHFLCTHQMLPEAKTLIQIVVSRKGKGSASAVFAAIL 60
Query: 207 EKFEKEGLESDLEKLKGIFA----TGSIDNSIEKVASRICKVVRSDIWGDDVERQLRDL- 261
E K SD+ GI +G + ++IE R+ K + + D + L L
Sbjct: 61 ET--KGTQRSDIYVFSGIITAYLESGFLRDAIE--CYRLTKEHKFRVPFDTCRKVLEHLM 116
Query: 262 NVTFSNDLVKFVVDKLGDEPKKALIFFRWAEES----GFVKHDESSYNAMASVLGREDCI 317
+ + + F + L +L FF S G ++ +S ++A+
Sbjct: 117 KLKYFKLVWGFYEESLECGYPASLYFFNILMHSFCKEGEIRLAQSVFDAITK-------- 168
Query: 318 DRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFL 377
W + + S + M +K LG +E +K+A+ A +P V + L
Sbjct: 169 ---WGLRPSVVS--FNTLMNGYIK-LGDLNEXFRLKKAMQ------ASGVQPDVYTYSVL 216
Query: 378 LRKIVVSKQLD--MRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAME 435
+ + ++D LF +++ + G V +++ GR+ +I K M
Sbjct: 217 INGLCKESKMDDXNELFDEML----DXGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQML 272
Query: 436 EGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLD 495
+ + + L G +A + +D M G + +LI G C GDL+
Sbjct: 273 SQSLSPDLVTYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGSCKEGDLE 332
Query: 496 KAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEE 555
A + +M+ KE A L++ C + R++DA K + + LKP TY
Sbjct: 333 TAFEYRXRMI-KENIRLDDVAYTALISGLCQEGRSVDAEKMLREML-SVGLKPEIGTYTM 390
Query: 556 LIKNLLVQRGFKDALSLLCLMKDHGFPPFV 585
+I + L+ M+ G+ P V
Sbjct: 391 IINEFCKKGDVWTGSKLMKEMQRDGYVPSV 420
>gi|242067351|ref|XP_002448952.1| hypothetical protein SORBIDRAFT_05g002320 [Sorghum bicolor]
gi|241934795|gb|EES07940.1| hypothetical protein SORBIDRAFT_05g002320 [Sorghum bicolor]
Length = 455
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 46/201 (22%), Positives = 84/201 (41%), Gaps = 6/201 (2%)
Query: 447 SKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVE 506
+ I L G+ E +D +E G + +LI GHC+AG +D+A+ + MV
Sbjct: 139 NTILCNLCKEGRVMEGQRLVDSIECMGVRPDVISYNTLIDGHCLAGTIDEASKLLEGMVS 198
Query: 507 KEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGF 566
G ++ + L++ YC R ID+ + + + P TY ++ L + F
Sbjct: 199 V-GLKPNSFSYNTLLHGYCKAGR-IDSAYSLFRKMLSNGITPGVVTYNTILHGLFQTKRF 256
Query: 567 KDALSLLCLMKDHGFPPFV---DPFIKYVSKSGTSDDAIAFLKGMTSKRFP-SMSVVLCL 622
+A L M + G + + + + KS D+A + + SK ++ +
Sbjct: 257 SEAKELYLNMINSGTKWGIYTYNTILNGLCKSNCVDEAFKMFQSLCSKGLQLNIITFTIM 316
Query: 623 FAAFFQARRHSEAQDLLSKCP 643
A + R +A DL + P
Sbjct: 317 IGALLKGGRKEDAMDLFAAIP 337
Score = 44.3 bits (103), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 32/153 (20%), Positives = 68/153 (44%), Gaps = 2/153 (1%)
Query: 303 SYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFA 362
+YN + + L + +C+D +K+ + SKG ++ + T ++G + ++A+DL+
Sbjct: 277 TYNTILNGLCKSNCVDEAFKMFQSLCSKGLQLNIITFTIMIGALLKGGRKEDAMDLFAAI 336
Query: 363 MACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVG 422
A P V + ++ L+ F + +NG MLN++++ L+ G
Sbjct: 337 PANGLVPDVVTYRVVAENLIEEGSLEE--FDSLFSAMEKNGTAPNSQMLNALVRRLLHRG 394
Query: 423 RMGECNKILKAMEEGGFIASSNMKSKIAFRLSS 455
+ L ++E F ++ S + SS
Sbjct: 395 DISRAGAYLSKLDERNFSVEASTTSMLISIFSS 427
Score = 42.0 bits (97), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 48/243 (19%), Positives = 92/243 (37%), Gaps = 6/243 (2%)
Query: 412 NSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEA 471
N++L GR+ + + M G + I L + EA E +M
Sbjct: 209 NTLLHGYCKAGRIDSAYSLFRKMLSNGITPGVVTYNTILHGLFQTKRFSEAKELYLNMIN 268
Query: 472 SGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAI 531
SG+ G + +++ G C + +D+A FQ + K G +++ R
Sbjct: 269 SGTKWGIYTYNTILNGLCKSNCVDEAFKMFQSLCSK-GLQLNIITFTIMIGALLKGGRKE 327
Query: 532 DACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPP---FVDPF 588
DA + L P TY + +NL+ + ++ SL M+ +G P ++
Sbjct: 328 DAMDLFA-AIPANGLVPDVVTYRVVAENLIEEGSLEEFDSLFSAMEKNGTAPNSQMLNAL 386
Query: 589 IKYVSKSGTSDDAIAFLKGMTSKRFPSMSVVLCLFAAFFQARRHSEAQDLLSKCPRYVRN 648
++ + G A A+L + + F + + + F + + L K R + N
Sbjct: 387 VRRLLHRGDISRAGAYLSKLDERNFSVEASTTSMLISIFSSDEYQHHAKSLPKKYR-ILN 445
Query: 649 HAD 651
A+
Sbjct: 446 EAN 448
Score = 39.7 bits (91), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 50/248 (20%), Positives = 93/248 (37%), Gaps = 6/248 (2%)
Query: 395 VVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLS 454
++ + NG + N A G + + I M + G + + L
Sbjct: 17 LLNLMVANGISPNHHIFNIFFSAYAKCGMIDKAMDIFNKMRQHGLSPDAVSYGALIDALC 76
Query: 455 SAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAG 514
G+ D+A + M G ++ SL+ G C +K + F +M+ +
Sbjct: 77 KLGRVDDAEVKFNQMINEGVTPNIVVFSSLVYGLCSIDKWEKVEELFFEMLNVGIHPNIV 136
Query: 515 YAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLC 574
+ +L N C + R ++ + V + + ++P +Y LI + +A LL
Sbjct: 137 FFNTILCN-LCKEGRVMEGQRLV-DSIECMGVRPDVISYNTLIDGHCLAGTIDEASKLLE 194
Query: 575 LMKDHGFPP---FVDPFIKYVSKSGTSDDAIAFLKGMTSKRF-PSMSVVLCLFAAFFQAR 630
M G P + + K+G D A + + M S P + + FQ +
Sbjct: 195 GMVSVGLKPNSFSYNTLLHGYCKAGRIDSAYSLFRKMLSNGITPGVVTYNTILHGLFQTK 254
Query: 631 RHSEAQDL 638
R SEA++L
Sbjct: 255 RFSEAKEL 262
>gi|449508997|ref|XP_004163464.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
mitochondrial-like [Cucumis sativus]
Length = 732
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 66/285 (23%), Positives = 118/285 (41%), Gaps = 21/285 (7%)
Query: 292 EESGFVKHDESS---------YNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKV 342
EE+G V H+ S+ YN + L R++ + +L EM +KG + ++ T +
Sbjct: 442 EEAGLVLHEMSARGLTINSVIYNCLICALCRKEKVHVALNLLSEMCTKGCKPDLFTYNSL 501
Query: 343 LGRFSERNMVKEAVDLYEFAM---ACKNKPSVNCCTF-LLRKIVVSKQLDMRLFSKVVRV 398
+ + + + EA L+ + A N + N LLR+ K L + V
Sbjct: 502 IYGLCKVDRIDEAFRLFHNMLLDGAVANNVTYNTLIHALLRRGAFQKALTL------VND 555
Query: 399 FRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGK 458
G L N ++KA VG + + ++ + M G A + + + L GK
Sbjct: 556 MLFRGCTLDKITYNGLIKAFCKVGNIEKGLELYEQMIMDGLGADTISCNIMINGLCKVGK 615
Query: 459 KDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAID 518
D A EF+ G + S++ G C G + +A + F ++ + EG + +
Sbjct: 616 VDNAFEFLRDAINRGFVPDIVTYNSVLNGLCKVGRIKEALNLFDRL-QVEGVRPDAFTYN 674
Query: 519 LLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQ 563
++ C + DAC F + + E P + T+ L+ LL Q
Sbjct: 675 TFISWQCKEGMVNDACSFFYRGI-ENGFVPSNLTWNVLVYTLLKQ 718
Score = 47.4 bits (111), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 78/388 (20%), Positives = 158/388 (40%), Gaps = 29/388 (7%)
Query: 268 DLVKFVVDKLGDEPKKALI--FFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLD 325
D+ ++KLG K LI +E G V ES + + G+ + ++L
Sbjct: 113 DVYYVFINKLGAIGKFKLIDKLLMQMKEEGIV-FRESIFMIIMKHYGKAGQPGQAIRLLL 171
Query: 326 EMRS--------KGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFL 377
+MR+ K Y++ +E V N + A +++ ++ P+V +
Sbjct: 172 DMRAVYLCEPTFKSYDLVLEILVT-------GNCPQVATNVFYDMLSKGVSPTVFTFGIV 224
Query: 378 LRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEG 437
++ + + ++D ++R ++G V + +++ AL ++ E K+L+ M
Sbjct: 225 MKALCMFNEVDSA--CSLLRDMTKHGCVPNSIVYQTLIHALSQKNQVSEALKLLEEMFVM 282
Query: 438 GFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKA 497
G + + + L K +A + +D M G + + L+ G C G L++A
Sbjct: 283 GCMPDVQTFNDVIHGLCKVNKIHDATKLVDRMLLRGFYPDNMTYGFLLHGLCRIGKLNEA 342
Query: 498 ADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELI 557
K+ ++ L+N Y + +A F++ + + +P TY L+
Sbjct: 343 RKILIKI-----PCPNNAILNTLINGYVMSGQLKEAQSFLNETMINFGFQPDIFTYNILM 397
Query: 558 KNLLVQRGFKDALSLLCLMKDHGFPPFVDPF---IKYVSKSGTSDDAIAFLKGMTSKRFP 614
L + A L+ M G P V + + + K+G ++A L M+++
Sbjct: 398 HGLCKEGSLSFARDLVNEMSRRGCEPNVITYAILVNGLCKAGLLEEAGLVLHEMSARGLT 457
Query: 615 SMSVVL-CLFAAFFQARRHSEAQDLLSK 641
SV+ CL A + + A +LLS+
Sbjct: 458 INSVIYNCLICALCRKEKVHVALNLLSE 485
>gi|357121428|ref|XP_003562422.1| PREDICTED: pentatricopeptide repeat-containing protein At1g13040,
mitochondrial-like [Brachypodium distachyon]
Length = 663
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 60/258 (23%), Positives = 107/258 (41%), Gaps = 4/258 (1%)
Query: 304 YNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAM 363
YNA+ S R ID+ +K++ MR+ G E ++ T +L + M+++A L
Sbjct: 371 YNALISGFWRAGSIDKAYKIISFMRTNGCEPDIVTYNILLNHYCTIGMMEKAEKLIRKME 430
Query: 364 ACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGR 423
P LL+ + + QLD + F+ V E G N ++ A +
Sbjct: 431 TSGVNPDRYSYNQLLKGLCKTHQLD-KAFA-FVSDHMEVGGFCDTVSCNILIDAFCKTKK 488
Query: 424 MGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVS 483
+ ++ K M G A + + L S G + A E + M + D ++
Sbjct: 489 VKSALELFKEMGYKGMQADAVTYGTLINGLFSVGYYNLAEELFEQMLNAQIDPNVNLYNI 548
Query: 484 LIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVRE 543
++ C G +A F M++KE S + L+ ++RAI+A + +R
Sbjct: 549 MLHHLCKVGHFKRAQTIFSHMIQKE-VSPDTVTFNTLIYWLGKRSRAIEALNLFKD-MRT 606
Query: 544 YDLKPWHTTYEELIKNLL 561
++P T++ LI LL
Sbjct: 607 RGVEPDTLTFKYLISGLL 624
Score = 46.2 bits (108), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 45/214 (21%), Positives = 93/214 (43%), Gaps = 7/214 (3%)
Query: 322 KVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKI 381
+++++MR+KG ++ T V+ + EA+ L+E + KP V C L+ +
Sbjct: 284 QMVEKMRTKGTSPDVVTYQTVVSGLCDNKKFAEAIGLWEEMVKRDLKPDVFSCGALIFGL 343
Query: 382 VVSKQLD--MRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGF 439
+ ++D L S+++ + E L+ + N+++ G + + KI+ M G
Sbjct: 344 CKNNKVDEAFELASRMLTLDIE----LSVCIYNALISGFWRAGSIDKAYKIISFMRTNGC 399
Query: 440 IASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAAD 499
+ + + G ++A + + ME SG + + L+KG C LDKA
Sbjct: 400 EPDIVTYNILLNHYCTIGMMEKAEKLIRKMETSGVNPDRYSYNQLLKGLCKTHQLDKAFA 459
Query: 500 CFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDA 533
+E G + ++L++ +C + A
Sbjct: 460 FVSDHMEVGGFCDT-VSCNILIDAFCKTKKVKSA 492
Score = 39.7 bits (91), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 70/345 (20%), Positives = 121/345 (35%), Gaps = 14/345 (4%)
Query: 304 YNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAM 363
YN VL + C D K D +KG+ + T + + + N ++ +L
Sbjct: 196 YNRYIGVLVKNCCFDLVEKYYDMALAKGFCLTPFTYSRWISALCQSNRIELVQELLVDMD 255
Query: 364 ACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGR 423
P + C + + +L L ++V R G +V+ L +
Sbjct: 256 KLGCSPDIWACNIYIYYLCKQNRLPDAL--QMVEKMRTKGTSPDVVTYQTVVSGLCDNKK 313
Query: 424 MGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVS 483
E + + M + + F L K DEA E M ++ ++ +
Sbjct: 314 FAEAIGLWEEMVKRDLKPDVFSCGALIFGLCKNNKVDEAFELASRMLTLDIELSVCIYNA 373
Query: 484 LIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVRE 543
LI G AG +DKA M G ++L+N YC+ A K + +
Sbjct: 374 LISGFWRAGSIDKAYKIISFM-RTNGCEPDIVTYNILLNHYCTIGMMEKAEKLIRK-MET 431
Query: 544 YDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDH----GFPPFV--DPFIKYVSKSGT 597
+ P +Y +L+K L A + + DH GF V + I K+
Sbjct: 432 SGVNPDRYSYNQLLKGLCKTHQLDKAFAFV---SDHMEVGGFCDTVSCNILIDAFCKTKK 488
Query: 598 SDDAIAFLKGMTSKRFPSMSVVL-CLFAAFFQARRHSEAQDLLSK 641
A+ K M K + +V L F ++ A++L +
Sbjct: 489 VKSALELFKEMGYKGMQADAVTYGTLINGLFSVGYYNLAEELFEQ 533
>gi|162462150|ref|NP_001105879.1| chloroplast RNA processing1 [Zea mays]
gi|3289002|gb|AAC25599.1| CRP1 [Zea mays]
Length = 668
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 79/381 (20%), Positives = 143/381 (37%), Gaps = 52/381 (13%)
Query: 293 ESGFVKHDESSYNAMASVLGREDCIDR--FWKVLDEMRSKGYEMEMETCVKVLGRFSERN 350
E F+ S + +AS+L D D ++L ++R E + ++ F+
Sbjct: 183 EHDFLPDLASYSHLLASLLNTRDPPDAALLERLLGDLRESRLEPDAPLFSDLISAFARAA 242
Query: 351 MVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRE---NGNVLT 407
+ A++L A A P N T L+ + + ++ ++ +F E G +
Sbjct: 243 LPDAALELLASAQAIGLTPRSNAVTALISALGTAGRV-----AEAEALFLEFFLAGEIKP 297
Query: 408 DA-MLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFM 466
N++LK + +G + ++L M + G S + + AG+ + A +
Sbjct: 298 RTRAYNALLKGYVRIGSLKNAEQVLDEMSQCGVAPDEATYSLLVDAYTRAGRWESARILL 357
Query: 467 DHMEASGSDVGDKMWVSLIKGHCVAGD--------------------------------- 493
MEA G ++ ++ G GD
Sbjct: 358 KEMEADGVKPSSYVFSRILAGFRDRGDWQKAFAVLREMQASGVRPDRHFYNVMIDTFGKY 417
Query: 494 --LDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHT 551
L A D F KM E EG + L++ +C R A + +RE + P T
Sbjct: 418 NCLGHAMDAFNKMRE-EGIEPDVVTWNTLIDAHCKGGRHDRAAELFEE-MRESNCPPGTT 475
Query: 552 TYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPFIKYV---SKSGTSDDAIAFLKGM 608
TY +I L Q ++ ++L MK+ G P + + V +SG +AI ++ M
Sbjct: 476 TYNIMINLLGEQEHWEGVEAMLSEMKEQGLVPNIITYTTLVDVYGRSGRYKEAIDCIEAM 535
Query: 609 TSKRF-PSMSVVLCLFAAFFQ 628
+ PS ++ L A+ Q
Sbjct: 536 KADGLKPSPTMYHALVNAYAQ 556
Score = 43.5 bits (101), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 35/138 (25%), Positives = 62/138 (44%), Gaps = 2/138 (1%)
Query: 302 SSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEF 361
++YN M ++LG ++ + +L EM+ +G + T ++ + KEA+D E
Sbjct: 475 TTYNIMINLLGEQEHWEGVEAMLSEMKEQGLVPNIITYTTLVDVYGRSGRYKEAIDCIEA 534
Query: 362 AMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISV 421
A KPS L+ D L VV+ + +G ++ +LNS++ A
Sbjct: 535 MKADGLKPSPTMYHALVNAYAQRGLADHAL--NVVKAMKADGLEVSILVLNSLINAFGED 592
Query: 422 GRMGECNKILKAMEEGGF 439
R+ E +L+ M E G
Sbjct: 593 RRVVEAFSVLQFMRENGL 610
>gi|356533985|ref|XP_003535538.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g16880-like, partial [Glycine max]
Length = 594
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 83/397 (20%), Positives = 150/397 (37%), Gaps = 50/397 (12%)
Query: 166 TYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRNKMTEKF---------------- 209
T+N+M++ G G + E V M + G N M F
Sbjct: 210 THNIMVKWFGKEGKINEASDAVVKMVESGVSPDCFTYNTMINGFCKAGKLGEAFRMMDEM 269
Query: 210 EKEGLESDLEKLKGIFATGSIDNSIEKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDL 269
++GL+ D+ L + T ++ E+ K + D+V T+ +
Sbjct: 270 ARKGLKPDICTLNTMLHTLCMEKKPEEAYELTVKARKRGYILDEV---------TYGTLI 320
Query: 270 VKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRS 329
+ + G + KAL + ++ G V SYN + L D+ L+E+
Sbjct: 321 MGYFK---GKQEDKALKLWEEMKKRGIVP-SVVSYNPLIRGLCLSGKTDQAVDKLNELLE 376
Query: 330 KGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDM 389
KG + +C ++ + MV +A + + KP + LLR + ++DM
Sbjct: 377 KGLVPDEVSCNIIIHGYCWEGMVDKAFQFHNKMVGNSFKPDIFTRNILLRGLC---RVDM 433
Query: 390 RLFSKVVRVFRE---NGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMK 446
K ++F N + N+++ L GR+ E ++ ME F
Sbjct: 434 --LEKAFKLFNSWISKQNSVDVVTYNTMISYLCKEGRLDEAFDLMTDMEVKKFEPDQYTY 491
Query: 447 SKIAFRLSSAGKKDEANEFMDHMEASGSDV------------GDKMWVSLIKGHCVAGDL 494
+ I L+ AG+ +EA +FM + +G V D M+ I C G
Sbjct: 492 NAIVRALTHAGRTEEAEKFMSKLSETGQAVKTHDTSQELDASSDIMYSQQISDLCTQGKY 551
Query: 495 DKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAI 531
+A FQ+ E++G S Y L++ + + ++I
Sbjct: 552 KEAMKLFQE-SEQKGVSLNKYTYIKLMDGFLKRRKSI 587
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 85/389 (21%), Positives = 146/389 (37%), Gaps = 58/389 (14%)
Query: 300 DESSYNAMASVLGREDCIDRFWKVLDEMRS-------KGYEMEMETCVKVLGRFSERNMV 352
D +YN + L E ID +V DEM S Y ++ C K G ++
Sbjct: 136 DVWTYNTLVKGLCDEGKIDEAIRVRDEMESLKLIPDVVTYNTLIDGCFKWRGSTEGFRLL 195
Query: 353 KEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLN 412
+E M + N T + K+ + S V E+G N
Sbjct: 196 EE--------MKSRGGVEPNAVTHNIMVKWFGKEGKINEASDAVVKMVESGVSPDCFTYN 247
Query: 413 SVLKALISVGRMGECNKILKAMEEGGF---IASSNM---------KSKIAFRLSSAGKK- 459
+++ G++GE +++ M G I + N K + A+ L+ +K
Sbjct: 248 TMINGFCKAGKLGEAFRMMDEMARKGLKPDICTLNTMLHTLCMEKKPEEAYELTVKARKR 307
Query: 460 ----DEANE---FMDHMEASGSDVGDKMWVS---------------LIKGHCVAGDLDKA 497
DE M + + D K+W LI+G C++G D+A
Sbjct: 308 GYILDEVTYGTLIMGYFKGKQEDKALKLWEEMKKRGIVPSVVSYNPLIRGLCLSGKTDQA 367
Query: 498 ADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELI 557
D +++EK G + +++++ YC + A +F HN + KP T L+
Sbjct: 368 VDKLNELLEK-GLVPDEVSCNIIIHGYCWEGMVDKAFQF-HNKMVGNSFKPDIFTRNILL 425
Query: 558 KNL----LVQRGFKDALSLLCLMKDHGFPPFVDPFIKYVSKSGTSDDAIAFLKGMTSKRF 613
+ L ++++ FK S + + + I Y+ K G D+A + M K+F
Sbjct: 426 RGLCRVDMLEKAFKLFNSWISKQNSVDVVTY-NTMISYLCKEGRLDEAFDLMTDMEVKKF 484
Query: 614 -PSMSVVLCLFAAFFQARRHSEAQDLLSK 641
P + A A R EA+ +SK
Sbjct: 485 EPDQYTYNAIVRALTHAGRTEEAEKFMSK 513
>gi|115476328|ref|NP_001061760.1| Os08g0402600 [Oryza sativa Japonica Group]
gi|113623729|dbj|BAF23674.1| Os08g0402600, partial [Oryza sativa Japonica Group]
Length = 554
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 47/187 (25%), Positives = 71/187 (37%), Gaps = 2/187 (1%)
Query: 412 NSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEA 471
N +L L GRMGE + +L M + S + LS G
Sbjct: 137 NVLLSGLCRAGRMGETSALLDEMASQKMVPDGFTYSILFDGLSRNGDSKAMLSLFGKYLK 196
Query: 472 SGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAI 531
+G +GD L+ G C G + A + Q +V G + L+N YC +
Sbjct: 197 NGVTIGDYTCSILLNGLCKDGKVSIAEEVLQSLVNA-GLVPTRVIYNTLINGYCQTGE-L 254
Query: 532 DACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPFIKY 591
+ ++ +KP H TY LI L +A LL M+D+G P V+ F
Sbjct: 255 EGAFSTFGQMKSRHIKPDHITYNALINGLCKAERITNAQDLLMEMQDNGVNPTVETFNTL 314
Query: 592 VSKSGTS 598
+ G +
Sbjct: 315 IDAYGRT 321
Score = 48.9 bits (115), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 56/258 (21%), Positives = 109/258 (42%), Gaps = 6/258 (2%)
Query: 399 FRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGK 458
++NG T N+++ A G++ +C +L M+E G + I GK
Sbjct: 299 MQDNGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAFCKNGK 358
Query: 459 KDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAID 518
EA +D M +++ ++I + G D+A +KM + G S + +
Sbjct: 359 IPEAVAILDDMFHKDVLPNAQVYNAIIDAYVEHGPNDQAFILVEKM-KSNGISPSIVTYN 417
Query: 519 LLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKD 578
LL+ C++++ +A + + N + + L P +Y LI + AL L M
Sbjct: 418 LLIKGLCNQSQISEAEEII-NSLSNHRLIPDAVSYNTLISACCYRGNIDKALDLQQRMHK 476
Query: 579 HGFPPFVDPFIKYVSKSGTSD--DAIAFL--KGMTSKRFPSMSVVLCLFAAFFQARRHSE 634
+G V + + +S G + + + +L K M + PS ++ + A+ + +
Sbjct: 477 YGIKSTVRTYHQLISGLGGAGRLNEMEYLYQKMMQNNVVPSNAIHNIMVEAYSKYGNEIK 536
Query: 635 AQDLLSKCPRYVRNHADV 652
A+DL + + NH D
Sbjct: 537 AEDLRKEMLQKRNNHDDT 554
>gi|297745840|emb|CBI15896.3| unnamed protein product [Vitis vinifera]
Length = 650
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 116/524 (22%), Positives = 195/524 (37%), Gaps = 58/524 (11%)
Query: 145 DEARRFFNWVLEKESERLSS--KTYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVR 202
DEA FF L E+ LS +TYN++++I + L++ M ++G+
Sbjct: 131 DEAESFF---LYFETMGLSPNLQTYNILIKISCRKKQFDKAKELLNWMWEQGFSPDVFSY 187
Query: 203 NKMTEKFEKEGLESDLEKL--------------------KGIFATGSIDNSIEKVASRIC 242
+ K G SD KL G F G I N+ E + R+
Sbjct: 188 GTLINSLAKNGYMSDALKLFDEMPERGVTPDVACYNILIDGFFKKGDILNASE-IWERLL 246
Query: 243 KVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAE-ESGFVKHDE 301
K G V + NV + + K G + I+ R + E G D
Sbjct: 247 K-------GPSVYPNIPSYNVMING------LCKCGKFDESFEIWHRMKKNERG---QDL 290
Query: 302 SSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEF 361
+Y+ + L +D +V EM G ++ +L + ++E ++L++
Sbjct: 291 YTYSTLIHGLCGSGNLDGATRVYKEMAENGVSPDVVVYNTMLNGYLRAGRIEECLELWKV 350
Query: 362 --AMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVL-KAL 418
C+ S N L+R + + ++D + + + E + D+M VL L
Sbjct: 351 MEKEGCRTVVSYN---ILIRGLFENAKVDEAI--SIWELLPEK-DCCADSMTYGVLVHGL 404
Query: 419 ISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGD 478
G + + IL+ E G + S + L G+ DE +D M G
Sbjct: 405 CKNGYLNKALSILEEAENGRGDLDTFAYSSMINGLCREGRLDEVAGVLDQMTKHGCKPNP 464
Query: 479 KMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVH 538
+ ++I G A L+ A F MV K G + L+N R +A V
Sbjct: 465 HVCNAVINGFVRASKLEDALRFFGNMVSK-GCFPTVVTYNTLINGLSKAERFSEAYALVK 523
Query: 539 NCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFV---DPFIKYVSKS 595
+ + KP TY L+ L + AL+L C + GF P V + I + S
Sbjct: 524 EMLHK-GWKPNMITYSLLMNGLCQGKKLDMALNLWCQALEKGFKPDVKMHNIIIHGLCSS 582
Query: 596 GTSDDAIAFLKGMTSKR-FPSMSVVLCLFAAFFQARRHSEAQDL 638
G +DA+ M ++ P++ L F++ R A +
Sbjct: 583 GKVEDALQLYSEMKQRKCVPNLVTHNTLMEGFYKVRDFERASKI 626
Score = 40.8 bits (94), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 63/151 (41%), Gaps = 5/151 (3%)
Query: 482 VSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCV 541
+++IK + D+A D FQ+M E G + + L+N N+ +A F
Sbjct: 82 LTVIKAYAKNSMPDQALDIFQRMHEIFGCQPGIRSYNSLLNALIESNKWDEAESFFLY-F 140
Query: 542 REYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFV---DPFIKYVSKSGTS 598
L P TY LIK ++ F A LL M + GF P V I ++K+G
Sbjct: 141 ETMGLSPNLQTYNILIKISCRKKQFDKAKELLNWMWEQGFSPDVFSYGTLINSLAKNGYM 200
Query: 599 DDAIAFLKGMTSKRF-PSMSVVLCLFAAFFQ 628
DA+ M + P ++ L FF+
Sbjct: 201 SDALKLFDEMPERGVTPDVACYNILIDGFFK 231
>gi|224113307|ref|XP_002316451.1| predicted protein [Populus trichocarpa]
gi|222865491|gb|EEF02622.1| predicted protein [Populus trichocarpa]
Length = 707
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 87/396 (21%), Positives = 156/396 (39%), Gaps = 18/396 (4%)
Query: 253 DVERQLRDLNVTFSNDLVKFVVDKLGDEPK--KALIFFRWAEESGFVKHDESSYNAMASV 310
D+ R+ V N +++ L E K KA + E G V E YN + +
Sbjct: 228 DLYREAIGKGVKIDNYTCSILLNGLCKEGKVEKAEEVLKSLVEHGLVP-GEVIYNTIVNG 286
Query: 311 LGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPS 370
+ +DR +++M S+G V+ +F E M+ +A + + + PS
Sbjct: 287 YCQIGDMDRAILTIEQMESRGLRPNCIAFNSVIDKFCEMQMIDKAEEWVKKMVGKGIAPS 346
Query: 371 VNCCTFLLRKIVVSKQLDMRLFSKVVRVFRE---NGNVLTDAMLNSVLKALISVGRMGEC 427
V T+ I++ + +FS+ ++ E NG S++ L G++ E
Sbjct: 347 VE--TY---NILIDGYGRLCVFSRCFQILEEMEENGEKPNVISYGSLINCLCKDGKILEA 401
Query: 428 NKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKG 487
+L+ M G + ++N+ + + + GK EA F D M +G + SLIKG
Sbjct: 402 EMVLRDMVGRGVLPNANIYNMLIDGSCTVGKLREALRFFDEMSKNGIGATIVTYNSLIKG 461
Query: 488 HCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLK 547
C G L +A + F ++ G + L++ Y + + C ++ +++ LK
Sbjct: 462 LCKMGKLKEAEEMFF-LITSTGHCPDVITYNSLISGYSNAGNS-QKCLELYETMKKLGLK 519
Query: 548 PWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPP---FVDPFIKYVSKSGTSDDAIAF 604
P T+ LI + G K +L M P + I ++G A +
Sbjct: 520 PTINTFHPLISG-CSKEGIKLKETLFNEMLQMNLSPDRVVYNAMIHCYQETGHVQKAFSL 578
Query: 605 LKGMTSKRF-PSMSVVLCLFAAFFQARRHSEAQDLL 639
K M P L + + SE +DL+
Sbjct: 579 QKEMVDMGVRPDNKTYNSLILGHLKEGKLSETKDLV 614
>gi|30794106|gb|AAP40495.1| unknown protein [Arabidopsis thaliana]
Length = 974
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 56/234 (23%), Positives = 97/234 (41%), Gaps = 6/234 (2%)
Query: 412 NSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEA 471
+++K + R G+ ++LK M+E G + + LS A + DEA F+ M
Sbjct: 456 TTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNSLIIGLSKAKRMDEARSFLVEMVE 515
Query: 472 SGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAI 531
+G + + I G+ A + +AD + K + + G L+N YC K + I
Sbjct: 516 NGLKPNAFTYGAFISGYIEASEF-ASADKYVKEMRECGVLPNKVLCTGLINEYCKKEKVI 574
Query: 532 DACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPF--- 588
+AC + V + L TY L+ L DA + M+ G P V +
Sbjct: 575 EACSAYRSMVDQGILGD-AKTYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVL 633
Query: 589 IKYVSKSGTSDDAIAFLKGMTSKRF-PSMSVVLCLFAAFFQARRHSEAQDLLSK 641
I SK G A + M + P++ + L F ++ +A++LL +
Sbjct: 634 INGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDE 687
Score = 42.7 bits (99), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 89/450 (19%), Positives = 167/450 (37%), Gaps = 53/450 (11%)
Query: 238 ASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVV-DKLGDEPKKALIFFRWAEESGF 296
++ I +++ + W D + +L++ + ++V V+ K D+P K L FF W +
Sbjct: 35 SAEIAGILKQENWRDTLVSS--NLSIEINPEVVLSVLRSKRVDDPSKLLSFFNWVDSQKV 92
Query: 297 VKHDESSYNAMASVLGR-----------EDCIDRFWKVLDEMRSKGYEMEMETCVK---- 341
+ S++ +A L E I+R W V E+ S E K
Sbjct: 93 TEQKLDSFSFLALDLCNFGSFEKALSVVERMIERNWPVA-EVWSSIVRCSQEFVGKSDDG 151
Query: 342 -----VLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVV 396
+ + + ++EAV ++ +M + P ++ C LL ++ +LD LF V
Sbjct: 152 VLFGILFDGYIAKGYIEEAVFVFSSSMGLELVPRLSRCKVLLDALLRWNRLD--LFWDVY 209
Query: 397 RVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFR---- 452
+ E V + ++ A G + +L E+ A+ N+ + +
Sbjct: 210 KGMVERNVVFDVKTYHMLIIAHCRAGNVQLGKDVLFKTEKEFRTATLNVDGALKLKESMI 269
Query: 453 -----------------LSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLD 495
L + ++A + M++ G + + + LI G + D
Sbjct: 270 CKGLVPLKYTYDVLIDGLCKIKRLEDAKSLLVEMDSLGVSLDNHTYSLLIDGLLKGRNAD 329
Query: 496 KAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEE 555
A +MV G + Y D + SK ++ K + + + L P Y
Sbjct: 330 AAKGLVHEMV-SHGINIKPYMYDCCICVM-SKEGVMEKAKALFDGMIASGLIPQAQAYAS 387
Query: 556 LIKNLLVQRGFKDALSLLCLMKDHGF---PPFVDPFIKYVSKSGTSDDAIAFLKGM-TSK 611
LI+ ++ + LL MK P +K + SG D A +K M S
Sbjct: 388 LIEGYCREKNVRQGYELLVEMKKRNIVISPYTYGTVVKGMCSSGDLDGAYNIVKEMIASG 447
Query: 612 RFPSMSVVLCLFAAFFQARRHSEAQDLLSK 641
P++ + L F Q R +A +L +
Sbjct: 448 CRPNVVIYTTLIKTFLQNSRFGDAMRVLKE 477
Score = 41.2 bits (95), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 49/216 (22%), Positives = 84/216 (38%), Gaps = 12/216 (5%)
Query: 322 KVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKI 381
K + EMR G C ++ + ++ V EA Y + T L+ +
Sbjct: 543 KYVKEMRECGVLPNKVLCTGLINEYCKKEKVIEACSAYRSMVDQGILGDAKTYTVLMNGL 602
Query: 382 VVSKQLDMRLFSKVVRVFRE--NGNVLTDAMLNSVL-KALISVGRMGECNKILKAMEEGG 438
+ ++D +FRE + D VL +G M + + I M E G
Sbjct: 603 FKNDKVD-----DAEEIFREMRGKGIAPDVFSYGVLINGFSKLGNMQKASSIFDEMVEEG 657
Query: 439 FIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAA 498
+ + + + +G+ ++A E +D M G + ++I G+C +GDL +A
Sbjct: 658 LTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTIIDGYCKSGDLAEAF 717
Query: 499 DCFQKMVEKEGTSHAGYAIDLLVNTYCSKN---RAI 531
F +M K G + LV+ C N RAI
Sbjct: 718 RLFDEMKLK-GLVPDSFVYTTLVDGCCRLNDVERAI 752
>gi|312190399|gb|ADQ43199.1| unknown [Eutrema parvulum]
Length = 1128
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 89/445 (20%), Positives = 184/445 (41%), Gaps = 17/445 (3%)
Query: 145 DEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRNK 204
D +RFF ++ S + + TYN+M+ + G ++ GL + MK +G + N
Sbjct: 115 DGVKRFFKDMIGAGS-KPTVFTYNIMIDCMWKEGDIEAARGLFEEMKFRGLIPDTVTYNS 173
Query: 205 MTEKFEKEGLESD----LEKLKGIFATGSID--NSIEKVASRICKVVRS-DIWGDDVERQ 257
M + + K G D E++K + + NS+ + K+ + + + + +
Sbjct: 174 MIDGYGKVGRLDDTVYFFEEMKSMSCEPDVITYNSLINCFCKSGKLPKGLEFYREMKQSG 233
Query: 258 LRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCI 317
L+ V++S + F + D ++A+ F+ G V +E +Y ++ + +
Sbjct: 234 LKPNVVSYSTLVDAFCKE---DMMQQAIKFYVDMRRVGHVP-NEFTYTSLVDANCKIGNL 289
Query: 318 DRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFL 377
+++ +EM G E + T ++ + +KEA L+ + P++ L
Sbjct: 290 SDAFRLANEMLEVGVEWNVVTYTALIDGLCDAERMKEAEKLFGKMVTAGVIPNLASYNAL 349
Query: 378 LRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAML-NSVLKALISVGRMGECNKILKAMEE 436
+ V +K +D L +++ + G + D +L + + L + ++ ++ M+E
Sbjct: 350 IHGFVKAKNMDRAL--ELLNELKGRG-IQPDLLLYGTFIWGLCGLEKIEAAKVVMNEMQE 406
Query: 437 GGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDK 496
G A++ + + + +G E ++ M+ +V + LI G C + K
Sbjct: 407 NGIKANTLIYTTLMDAYFKSGNPTEGLHLLEEMQELDHEVTVVTFCVLIDGLCKNKLVSK 466
Query: 497 AADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEEL 556
A D F +M G +++ C +N+ A +E L P T Y L
Sbjct: 467 AIDYFGRMSNDFGLQPNAAVYTAMIDGLCKENQVKAATTLFEQMAQE-GLVPDRTAYTSL 525
Query: 557 IKNLLVQRGFKDALSLLCLMKDHGF 581
+ L Q +AL+L M + G
Sbjct: 526 MDGNLKQGNMLEALALRDKMAEIGM 550
>gi|302792409|ref|XP_002977970.1| hypothetical protein SELMODRAFT_108199 [Selaginella moellendorffii]
gi|300153991|gb|EFJ20627.1| hypothetical protein SELMODRAFT_108199 [Selaginella moellendorffii]
Length = 695
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 73/331 (22%), Positives = 137/331 (41%), Gaps = 9/331 (2%)
Query: 282 KKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVK 341
+KAL F R EE G +Y+++ + + + V EM +KG E ++
Sbjct: 61 EKALAFLREMEELGH-PPTPHAYSSIVQSFCKTGNVSKAMDVFAEMPAKGCEPDIVNFNV 119
Query: 342 VLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRE 401
+L + EA +L+ + KP V ++ + K+LD +F ++ ++
Sbjct: 120 LLSGLWRARKIHEARELFRSMNSRGCKPDVVTYNTMIAGLCKWKKLDEAVF--LLERMKQ 177
Query: 402 NGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDE 461
T +++ L R+ + ++ + M EG + S + +L AGK E
Sbjct: 178 EDVSPTFVTYTTLIDHLCKFTRLQQAYEVFEKMAEGPCACTEPAYSVLFNKLQRAGKLVE 237
Query: 462 ANEFMDHMEASGSDVGDKMWVSLIKGHC-VAGDLDKAADCFQKMVEKEGTSHAGYAIDLL 520
A+ M + D + ++ G + G +AA +M+ K+ + YA +L
Sbjct: 238 ASRVYSDMCRKNVCMTDNTYSLVVLGLSKMDGGNVEAAKLVTEMMGKK-IAPDFYAYSIL 296
Query: 521 VNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHG 580
+N C R +A K + +R + P TY L++ LL +DA+ L M D G
Sbjct: 297 INGLCKARRPGEA-KEMFQEMRGRGISPTVVTYNTLLEGLLSTAKLQDAMELTYFMLDQG 355
Query: 581 FPPFVDPF---IKYVSKSGTSDDAIAFLKGM 608
P + I+ +G +++A + M
Sbjct: 356 RLPDTCSYNLMIRGFCANGDTNEAYCLFQDM 386
Score = 46.6 bits (109), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 48/203 (23%), Positives = 86/203 (42%), Gaps = 9/203 (4%)
Query: 414 VLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASG 473
++ L R GE ++ + M G + + + L S K +A E M G
Sbjct: 296 LINGLCKARRPGEAKEMFQEMRGRGISPTVVTYNTLLEGLLSTAKLQDAMELTYFMLDQG 355
Query: 474 SDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDA 533
+ +I+G C GD ++A FQ M+ K+G + + ++ + K+ A +
Sbjct: 356 RLPDTCSYNLMIRGFCANGDTNEAYCLFQDMI-KDGIVLNTWTYNFMIVGFI-KDEAWSS 413
Query: 534 C----KFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFV---D 586
K + + + P TYE LI +L ++A LL M+D GF P + +
Sbjct: 414 AWMLFKRMQSGKNDKVPAPNMFTYEILISSLCKTDQVEEAFKLLSAMRDKGFVPSLKIWE 473
Query: 587 PFIKYVSKSGTSDDAIAFLKGMT 609
+ ++++G DDA K M+
Sbjct: 474 VLLSRLARAGRLDDAFELYKEMS 496
Score = 44.3 bits (103), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 42/195 (21%), Positives = 75/195 (38%), Gaps = 37/195 (18%)
Query: 303 SYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFA 362
+Y + S L + D ++ +K+L MR KG+ ++ +L R + + +A +LY
Sbjct: 436 TYEILISSLCKTDQVEEAFKLLSAMRDKGFVPSLKIWEVLLSRLARAGRLDDAFELY--- 492
Query: 363 MACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVG 422
K +NC +++V S N+L D +L G
Sbjct: 493 ---KEMSRINC-----QQLVGS------------------SNILLDGILRR--------G 518
Query: 423 RMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWV 482
+ E LK M + G + K+ L GK D+A + ++ + G ++
Sbjct: 519 SVDEAKDFLKQMTDTGIVPDKFTYDKLVVGLCWQGKADQARKLVEELVRDGKRPENQGLR 578
Query: 483 SLIKGHCVAGDLDKA 497
L+ C GD A
Sbjct: 579 QLLGALCAQGDFQGA 593
>gi|242084242|ref|XP_002442546.1| hypothetical protein SORBIDRAFT_08g021630 [Sorghum bicolor]
gi|241943239|gb|EES16384.1| hypothetical protein SORBIDRAFT_08g021630 [Sorghum bicolor]
Length = 735
Score = 57.0 bits (136), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 88/455 (19%), Positives = 177/455 (38%), Gaps = 45/455 (9%)
Query: 231 DNSIEKVASRI----CKVVR-SDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKAL 285
D+ E++ SR+ C+++ D W +E QLR L + V+ V+ +A
Sbjct: 50 DDLAEELRSRLVRDTCRLLELRDSWSAKLEAQLRHLLRAMTPSQVRAVLRAQAQRDARAA 109
Query: 286 I-FFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLG 344
FFRWA+ +H ++ M +L R D +V+ M +G ++
Sbjct: 110 FEFFRWADRQWKYRHAPEVFDEMLVLLSRTRLHDPARRVMRLMIRRGMPRGTRQFAHLML 169
Query: 345 RFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRL-FSKVVRVFRENG 403
+S ++ A+ + + P + C + +VV+ ++D L F++ +R +
Sbjct: 170 SYSRAGKLRSAMRVLQLMQKDGCAPDICICNMAVNVLVVAGRIDKALEFAERMRRVGVDP 229
Query: 404 NVLT---------------DA--MLNSVLKA---------------LISVGRMGECNKIL 431
+V+T DA M++S+L+ L R+ + +L
Sbjct: 230 DVVTYNCLIKGLCGARRIVDALEMISSMLQNGCLPDKISYFTVMSFLCKEKRVADVQNLL 289
Query: 432 KAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVA 491
+ M + G + + L+ G DEA F+ E V + + + + C+
Sbjct: 290 ERMSDAGIFPDQVTYNMLIHGLAKHGHADEALSFLRESEGKRFRVDEVGYSATVHSFCLN 349
Query: 492 GDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHT 551
G + +A + +M+ K G +V+ +C A K + + + KP
Sbjct: 350 GRMAEAKEIIGEMISK-GCRPDVVTYSAVVDGFCRIGELDQARKMMKHMYKN-GCKPNTV 407
Query: 552 TYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPF---IKYVSKSGTSDDAIAFLKGM 608
T+ L+ L +A LL ++ + P + + + G ++ + M
Sbjct: 408 THTALLNGLCKVGKSSEAWELLNKSEEEWWTPSAITYSVVMHGFRREGKLKESCDVVMQM 467
Query: 609 TSKR-FPSMSVVLCLFAAFFQARRHSEAQDLLSKC 642
K FP+ + L A R+ ++A+D + +C
Sbjct: 468 LQKGFFPTTVEINLLIHALCNERKPADAKDFMEQC 502
>gi|356540375|ref|XP_003538665.1| PREDICTED: pentatricopeptide repeat-containing protein At3g18110,
chloroplastic-like [Glycine max]
Length = 1476
Score = 57.0 bits (136), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 73/367 (19%), Positives = 156/367 (42%), Gaps = 11/367 (2%)
Query: 279 DEPKKALIFFRWAEESGFV-KHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEME 337
D P+ A AE++G + +D S Y + G+ + ++ +R + +M+ +
Sbjct: 751 DLPETAHHLLYHAEKNGIILDNDISVYIDIVETYGKLKIWQKAESLVGSLRQRCSKMDRK 810
Query: 338 TCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVR 397
++ ++ + A ++ M P+V+ LL+ ++V ++L+ L+ V++
Sbjct: 811 VWNALIHAYAFSGCYERARAIFNTMMRDGPSPTVDSVNGLLQALIVDRRLN-ELYV-VIQ 868
Query: 398 VFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAG 457
++ G ++ + + L+A G + E KI M+ G+ + ++ +I RL
Sbjct: 869 ELQDMGLKISKSSILLTLEAFAQAGNLFEVQKIYNGMKAAGYFPTMHV-YRIMLRLLCKC 927
Query: 458 KK-DEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYA 516
K+ + + ME +G ++ S++K + D +QK ++
Sbjct: 928 KRVRDVETMLCEMEEAGFQPDLQICNSILKLYLGIEDFKSMGIIYQK-IQDASLKPDEET 986
Query: 517 IDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLM 576
+ L+ YC R + + N +R L+P TY LI QR ++ A L +
Sbjct: 987 YNTLIIMYCRDRRPEEGFSLM-NKMRSLGLEPKLDTYRSLITAFNKQRMYEQAEELFEEL 1045
Query: 577 KDHGFP---PFVDPFIKYVSKSGTSDDAIAFLKGMTSKRF-PSMSVVLCLFAAFFQARRH 632
+ +G+ F +K SG A L M P++S + L ++ ++ +
Sbjct: 1046 RSNGYKLDRAFYHLMMKTYRTSGDHRKAENLLAIMKESGIEPTISTMHLLMVSYGKSGQP 1105
Query: 633 SEAQDLL 639
EA+++L
Sbjct: 1106 EEAENVL 1112
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 68/365 (18%), Positives = 160/365 (43%), Gaps = 24/365 (6%)
Query: 145 DEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRNK 204
+ AR FN ++ ++ + + N +L+ + V + E + ++ ++ G ++
Sbjct: 826 ERARAIFNTMM-RDGPSPTVDSVNGLLQALIVDRRLNELYVVIQELQDMGLKISKSSILL 884
Query: 205 MTEKFEKEGLESDLEKL-KGIFATGSIDN-SIEKVASRI---CKVVRSDIWGDDVERQLR 259
E F + G +++K+ G+ A G + ++ R+ CK VR DVE L
Sbjct: 885 TLEAFAQAGNLFEVQKIYNGMKAAGYFPTMHVYRIMLRLLCKCKRVR------DVETMLC 938
Query: 260 DL-------NVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLG 312
++ ++ N ++K LG E K++ + +K DE +YN + +
Sbjct: 939 EMEEAGFQPDLQICNSILKLY---LGIEDFKSMGIIYQKIQDASLKPDEETYNTLIIMYC 995
Query: 313 REDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVN 372
R+ + + ++++MRS G E +++T ++ F+++ M ++A +L+E + N ++
Sbjct: 996 RDRRPEEGFSLMNKMRSLGLEPKLDTYRSLITAFNKQRMYEQAEELFEELRS--NGYKLD 1053
Query: 373 CCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILK 432
+ L D R ++ + +E+G T + ++ ++ + G+ E +LK
Sbjct: 1054 RAFYHLMMKTYRTSGDHRKAENLLAIMKESGIEPTISTMHLLMVSYGKSGQPEEAENVLK 1113
Query: 433 AMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAG 492
+ G + + S + G E + M+ +G + ++W I+ ++
Sbjct: 1114 NLRTTGVVLDTLPYSSVIDAYLKKGDFKAGIEKLTEMKEAGIEPDHRIWTCFIRAATLSE 1173
Query: 493 DLDKA 497
++A
Sbjct: 1174 GTNEA 1178
Score = 49.7 bits (117), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 69/350 (19%), Positives = 128/350 (36%), Gaps = 37/350 (10%)
Query: 269 LVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMR 328
+V ++ LG ++AL +A V YNAM V R + ++LD MR
Sbjct: 217 MVATILGVLGKANQEALAVEIFARAESSVGDTVQVYNAMMGVYARNGRFSKVKELLDLMR 276
Query: 329 SKGY------------------EMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPS 370
+G ME +++L + + + AC + +
Sbjct: 277 ERGCVPDLVSFNTLINARMKSGAMEPNLALQLLNEVRRSGIRPDIITYNTLISACSRESN 336
Query: 371 VNCCTFLLRKIVVSK-QLDMRLFSKVVRVFR---------------ENGNVLTDAML-NS 413
+ + + + Q D+ ++ ++ V+ E+ DA+ NS
Sbjct: 337 LEEAVAVFSDMESHRCQPDLWTYNAMISVYGRCARARKAEELFKELESKGFFPDAVTYNS 396
Query: 414 VLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASG 473
+L A G + I + M + GF + I G+ D+A + M++SG
Sbjct: 397 LLYAFSREGNTEKVRDICEEMVKRGFGQDEMTYNTIIHMYGKQGRHDQAMQIYRDMKSSG 456
Query: 474 SDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDA 533
+ + LI A +++AA+ +M++ G + L+ Y + +A
Sbjct: 457 RNPDAVTYTVLIDSLGKASKVEEAANVMSEMLDA-GVKPTLHTYSALICAYAKAGKREEA 515
Query: 534 CKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPP 583
+ NC+R +KP Y ++ L K A+ L M GF P
Sbjct: 516 -EETFNCMRRSGIKPDRLAYSVMLDFFLRFNEMKKAMGLYHEMIREGFTP 564
>gi|297800058|ref|XP_002867913.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297313749|gb|EFH44172.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 724
Score = 57.0 bits (136), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 123/590 (20%), Positives = 233/590 (39%), Gaps = 60/590 (10%)
Query: 121 LELSGVVFTHEMVLKVLKNL--ESSPDEARRFFNWVLEKESERLSSKTY----------- 167
L+ THE + V+ +L ES A FF W + E R + Y
Sbjct: 105 LDFDANSLTHEQAITVVASLASESGSMVALCFFYWAVGFEKFRHFMRLYLVTADSLIANG 164
Query: 168 NL---------MLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRNKMTEKFEKEGLESDL 218
NL MLR G + E G+V M+ +G +S N + E + GL +
Sbjct: 165 NLQKAHEVMRCMLRNFSEIGRLNEAVGMVMDMQNQGLSPSSITMNCVLEIAIESGL---I 221
Query: 219 EKLKGIFATGSI-----DNSIEKVASRIC----KVVRSDIW-GDDVERQLRDLNVTFSND 268
+ + +F S+ D+S K+ C K+ +D W ++R N T +
Sbjct: 222 DYAENVFDEMSVRGVCPDSSSFKLMVIGCFRDGKIQEADRWLSGMIQRGFIPDNATCTLI 281
Query: 269 LVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMR 328
L + L + +A+ +FR + GF K + ++ ++ L ++ I + +++L+EM
Sbjct: 282 LSALCENGLVN---RAIWYFRKMIDLGF-KPNLINFTSLIDGLCKKGSIKQAFEMLEEMV 337
Query: 329 SKGYEMEMETCVKVLGRFSERNMVKEAVDLY-EFAMACKNKPSVNCCTFLLRKIVVSKQL 387
G++ + T ++ +R ++A L+ + + KP+V+ T ++ +L
Sbjct: 338 RNGWKPNVYTHTALIDGLCKRGWTEKAFRLFLKLVRSDIYKPNVHTYTSMIGGYCKEDKL 397
Query: 388 DMR--LFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNM 445
+ LFS++ +E G +++ G +++ M++ GF +
Sbjct: 398 NRAEMLFSRM----KEQGLFPNVNTYTTLINGHCKAGNFDRAYELMNLMDDEGFRPNIYT 453
Query: 446 KSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMV 505
+ + L + EA E ++ + G + + LI+ C D+ +A F +M
Sbjct: 454 YNAVIDSLCKKSRAPEAYELLNKAFSCGLEADGVTYTILIQEQCKQSDIKQALAFFCRM- 512
Query: 506 EKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRG 565
K G ++L+ +C + + ++ + V L P TY +I +
Sbjct: 513 NKTGFEADMRLNNILIAAFCRQKKMKESERLFQ-LVVSLGLVPTKETYTSMISGYCKEGD 571
Query: 566 FKDALSLLCLMKDHGFPPFVDPF-----IKYVSKSGTSDDAIAFLKGMTSKRFPSMSVVL 620
F AL MK HG P D F I + K D+A + M + V
Sbjct: 572 FDLALKYFHNMKRHGCVP--DSFTYGSLISGLCKKSMVDEACKLYEAMIDRGLSPPEVTR 629
Query: 621 CLFAAFFQARRHSEAQDLLSKCP----RYVRNHADVLNLLYSKKSGGDSA 666
A+ +R+ A ++ P ++R ++ L S+K G +A
Sbjct: 630 VTL-AYEYCKRNDSASAMIVLEPLDKKLWIRTVRTLVRKLCSEKKVGVAA 678
>gi|225430029|ref|XP_002281569.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g25630-like [Vitis vinifera]
Length = 635
Score = 57.0 bits (136), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 43/210 (20%), Positives = 96/210 (45%), Gaps = 2/210 (0%)
Query: 297 VKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAV 356
++ D +YN +A+ + + ++ EM++ + TC ++G + + +KEA+
Sbjct: 244 LQPDAVTYNTIATAYAQNGEASQAEGIILEMQNSNVQPNERTCCIIIGGYCKEGKIKEAL 303
Query: 357 DLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLK 416
+P++ L++ + +D ++V+ + E G ++++
Sbjct: 304 QFVYRMKDLGLQPNLVVFNSLIKGFI--DAVDRDGVNEVLTLMEEFGVKPDVITFSTIMN 361
Query: 417 ALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDV 476
A + G M +C +I M + +++ S +A AG+ ++A E ++ M SG
Sbjct: 362 AWSAAGFMDKCREIFDDMVKARIQPDAHVYSILAKGYVRAGEPEKAEEILNAMIKSGFHP 421
Query: 477 GDKMWVSLIKGHCVAGDLDKAADCFQKMVE 506
++ ++I G C AG ++ A F+KM E
Sbjct: 422 NVVIFTTIINGWCSAGRMEYAIKIFEKMCE 451
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 69/346 (19%), Positives = 134/346 (38%), Gaps = 54/346 (15%)
Query: 340 VKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVF 399
K++ E+ +E + + + +KPS+ T LL + + K D ++
Sbjct: 76 TKLMNIMIEKGRPQEVQSILDSIIEGGHKPSLVTYTTLLAALTIQKHFDS--IHSIISQV 133
Query: 400 RENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKK 459
ENG N+V+ A G M E K M+E G +++ + + AG+
Sbjct: 134 EENGMEPDSIFFNAVINAFSESGNMQEAMKYFWKMKESGSKPTTSTFNTLIKGYGIAGEP 193
Query: 460 DEANEFMDHMEASGSDVGD-KMWVSLIKGHCVAGDLDKAADCFQKMVEK----------- 507
+E+ + ++ M + + + + L++ C ++ KA + KMV
Sbjct: 194 EESQKLLELMSQDENVRPNLRTYNVLVRAWCNKKNIMKAWNVVYKMVASGLQPDAVTYNT 253
Query: 508 ---------EGTSHAGYAIDL--------------LVNTYCSKNRAIDACKFVHNCVREY 544
E + G +++ ++ YC + + +A +FV+ +++
Sbjct: 254 IATAYAQNGEASQAEGIILEMQNSNVQPNERTCCIIIGGYCKEGKIKEALQFVYR-MKDL 312
Query: 545 DLKPWHTTYEELIKNLLVQRGFKDAL------SLLCLMKDHGFPPFVDPF---IKYVSKS 595
L+P + LIK GF DA+ +L LM++ G P V F + S +
Sbjct: 313 GLQPNLVVFNSLIK------GFIDAVDRDGVNEVLTLMEEFGVKPDVITFSTIMNAWSAA 366
Query: 596 GTSDDAIAFLKGMTSKRF-PSMSVVLCLFAAFFQARRHSEAQDLLS 640
G D M R P V L + +A +A+++L+
Sbjct: 367 GFMDKCREIFDDMVKARIQPDAHVYSILAKGYVRAGEPEKAEEILN 412
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 67/309 (21%), Positives = 124/309 (40%), Gaps = 8/309 (2%)
Query: 277 LGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEM 336
+ EP+++ + V+ + +YN + + I + W V+ +M + G + +
Sbjct: 189 IAGEPEESQKLLELMSQDENVRPNLRTYNVLVRAWCNKKNIMKAWNVVYKMVASGLQPDA 248
Query: 337 ETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVV 396
T + +++ +A + +P+ C ++ ++ L + V
Sbjct: 249 VTYNTIATAYAQNGEASQAEGIILEMQNSNVQPNERTCCIIIGGYCKEGKIKEAL--QFV 306
Query: 397 RVFRENGNVLTDAMLNSVLKALI-SVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSS 455
++ G + NS++K I +V R G N++L MEE G S I S+
Sbjct: 307 YRMKDLGLQPNLVVFNSLIKGFIDAVDRDG-VNEVLTLMEEFGVKPDVITFSTIMNAWSA 365
Query: 456 AGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGY 515
AG D+ E D M + ++ L KG+ AG+ +KA + M+ K G
Sbjct: 366 AGFMDKCREIFDDMVKARIQPDAHVYSILAKGYVRAGEPEKAEEILNAMI-KSGFHPNVV 424
Query: 516 AIDLLVNTYCSKNRAIDACK-FVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLC 574
++N +CS R A K F C E + P T+E LI R + +L
Sbjct: 425 IFTTIINGWCSAGRMEYAIKIFEKMC--ECGIAPNLKTFETLIWGYGEARQPWKSEEVLQ 482
Query: 575 LMKDHGFPP 583
+M++ P
Sbjct: 483 IMEEFNVQP 491
>gi|41152686|dbj|BAD08211.1| hypothetical protein [Oryza sativa Indica Group]
gi|67906118|dbj|BAE00069.1| PPR protein [Oryza sativa Indica Group]
Length = 794
Score = 57.0 bits (136), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 94/431 (21%), Positives = 172/431 (39%), Gaps = 25/431 (5%)
Query: 166 TYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRNKMT--EKFEKEGLESDLEKLKG 223
+YN++L+ + QE L+ +M G V + T F KEG DL+K G
Sbjct: 164 SYNILLKGLCDENRSQEALELLQMMPDDGGDCPPDVVSYTTVINGFFKEG---DLDKAYG 220
Query: 224 IFAT----GSIDNSI--EKVASRICKVVRSDIWGDDVERQLRD---LNVTFSNDLVKFVV 274
+ G + N + + + +CK D + + +++ N N +V
Sbjct: 221 TYHEMLDRGILPNVVTYNSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYC 280
Query: 275 DKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEM 334
+PK+A+ F + G V+ D +YN++ L + K+ D M +G +
Sbjct: 281 SS--GQPKEAIGFLKKMHSDG-VEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKP 337
Query: 335 EMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLD--MRLF 392
E+ T +L ++ + + E L + + P+ + L+ ++D M +F
Sbjct: 338 EITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVF 397
Query: 393 SKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFR 452
SK+ R+ G +V+ L GR+ + + + M + + + + +
Sbjct: 398 SKM----RQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHS 453
Query: 453 LSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSH 512
L K D+A E + M G + + S+I HC G + ++ F MV + G
Sbjct: 454 LCIFDKWDKAKELILEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMV-RIGVKP 512
Query: 513 AGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSL 572
L++ YC + +A K + + V +KP TY LI +DAL L
Sbjct: 513 NIITYSTLIDGYCLAGKMDEATKLLASMV-SVGMKPDCVTYNTLINGYCKISRMEDALVL 571
Query: 573 LCLMKDHGFPP 583
M+ G P
Sbjct: 572 FREMESSGVSP 582
Score = 47.0 bits (110), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 75/349 (21%), Positives = 140/349 (40%), Gaps = 17/349 (4%)
Query: 241 ICKVVRSDIWGDDVERQLRDL----NVTFSNDLVKFVVDKLGDEPKKALIFFRW-AEESG 295
+C R+ D V R++ L NV N L+K + D+ + ++AL + ++ G
Sbjct: 136 LCADKRTSDAMDIVLRRMTQLGCIPNVFSYNILLKGLCDE--NRSQEALELLQMMPDDGG 193
Query: 296 FVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEA 355
D SY + + +E +D+ + EM +G + T ++ + + +A
Sbjct: 194 DCPPDVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYNSIIAALCKAQAMDKA 253
Query: 356 VDLYEFAMACKNKPSVNCCTF--LLRKIVVSKQLDMRL-FSKVVRVFRENGNVLTDAMLN 412
+++ KN NC T+ ++ S Q + F K + +V+T N
Sbjct: 254 MEV--LTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVT---YN 308
Query: 413 SVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEAS 472
S++ L GR E K+ +M + G + ++ G E + +D M +
Sbjct: 309 SLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRN 368
Query: 473 GSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAID 532
G ++ LI + G +D+A F KM ++G + ++ C R D
Sbjct: 369 GIHPNHYVFSILICAYAKQGKVDQAMLVFSKM-RQQGLNPDTVTYGTVIGILCKSGRVED 427
Query: 533 ACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGF 581
A ++ + E L P + Y LI +L + + A L+ M D G
Sbjct: 428 AMRYFEQMIDE-RLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGI 475
Score = 40.0 bits (92), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 68/163 (41%), Gaps = 7/163 (4%)
Query: 484 LIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVRE 543
LI C AG LD +++K G A L+ C+ R DA V + +
Sbjct: 97 LIGSCCCAGRLDLGFAALGNVIKK-GFRVDAIAFTPLLKGLCADKRTSDAMDIVLRRMTQ 155
Query: 544 YDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHG--FPPFVDPFIKYVS---KSGTS 598
P +Y L+K L + ++AL LL +M D G PP V + ++ K G
Sbjct: 156 LGCIPNVFSYNILLKGLCDENRSQEALELLQMMPDDGGDCPPDVVSYTTVINGFFKEGDL 215
Query: 599 DDAIAFLKGMTSKR-FPSMSVVLCLFAAFFQARRHSEAQDLLS 640
D A M + P++ + AA +A+ +A ++L+
Sbjct: 216 DKAYGTYHEMLDRGILPNVVTYNSIIAALCKAQAMDKAMEVLT 258
>gi|357114607|ref|XP_003559090.1| PREDICTED: pentatricopeptide repeat-containing protein At1g77360,
mitochondrial-like [Brachypodium distachyon]
Length = 486
Score = 57.0 bits (136), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 91/464 (19%), Positives = 194/464 (41%), Gaps = 58/464 (12%)
Query: 120 QLELSGVVFTHEMVLKVLKNLESSPDEARRFFNWVLEKESERL--SSKTYNLMLRIVGVH 177
+L+ S + T ++ +VL+ L+++ A RFF W +++ + ++Y+ ++ +
Sbjct: 57 ELDHSDLRVTPDVAERVLERLDNAGMLAYRFFEWARKQKRGGCNHTIRSYHTVVASLAKI 116
Query: 178 GLVQEFWGLVDVMKKKG------YGVASHVRNKMTEKFEKEGLESDLEKLKGIFATGSID 231
Q W +V +M+++G +G+ + +KF++ ++ + G+ +
Sbjct: 117 RQYQLMWDVVAIMRREGVVNVETFGIIMR-KYARAQKFDEAVYTFNIMEKYGVVPNLAAF 175
Query: 232 NSIEKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWA 291
NS+ +CK + +R F DK+
Sbjct: 176 NSL---LGALCK-----------SKNVRKAQEIF---------DKM-------------- 198
Query: 292 EESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNM 351
+G D +Y+ + G+ + + +V EM G + ++ T ++ +
Sbjct: 199 --NGRFNPDAKTYSILLEGWGKAPNLPKMREVYSEMLDAGCQPDIVTYGIMVDSLCKTGR 256
Query: 352 VKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVF-RENGNVLTDAM 410
V+EAV + + + +P+ TF+ +V + ++MR+ V E ++ D +
Sbjct: 257 VEEAVLVVQDMSSRGCQPT----TFIYSVLVHTYGVEMRIEDAVATFLDMEKDGIVPDVV 312
Query: 411 L-NSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHM 469
+ N+++ A V + +++ ME G +S + I +L S GK DEA M
Sbjct: 313 VYNALVTAFCKVKKFENAFRVMDDMEGHGIAPNSRTWNIILNKLISLGKDDEAYRVFRRM 372
Query: 470 EASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNR 529
D + +IK C +++ A ++ M K+ + +L+N C K
Sbjct: 373 IKRCQPDSDT-YTMMIKMFCENDNVEMALKVWKYMRLKQFLPSM-HTFSVLINGLCDKGE 430
Query: 530 AIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLL 573
AC + + + E ++P +T+ +L + LL++ G KD L L
Sbjct: 431 VSQACVLLEDMI-EKGIRPPGSTFGKL-RQLLLKEGRKDVLEFL 472
Score = 50.1 bits (118), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 71/350 (20%), Positives = 133/350 (38%), Gaps = 47/350 (13%)
Query: 238 ASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWA--EESG 295
A R+CK++ S +E +L ++ + D+ + V+++L + A FF WA ++ G
Sbjct: 38 AKRLCKLIISCQKASGLELELDHSDLRVTPDVAERVLERLDNAGMLAYRFFEWARKQKRG 97
Query: 296 FVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEA 355
H SY+ + + L + W V+ MR +G
Sbjct: 98 GCNHTIRSYHTVVASLAKIRQYQLMWDVVAIMRREGV----------------------- 134
Query: 356 VDLYEFAMACKNKPSVNCCTF--LLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNS 413
VN TF ++RK +++ D +++ + + G V A NS
Sbjct: 135 ---------------VNVETFGIIMRKYARAQKFDEAVYT--FNIMEKYGVVPNLAAFNS 177
Query: 414 VLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASG 473
+L AL + + +I M G F + S + A + E M +G
Sbjct: 178 LLGALCKSKNVRKAQEIFDKM-NGRFNPDAKTYSILLEGWGKAPNLPKMREVYSEMLDAG 236
Query: 474 SDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDA 533
+ ++ C G +++A Q M + G + +LV+TY + R DA
Sbjct: 237 CQPDIVTYGIMVDSLCKTGRVEEAVLVVQDMSSR-GCQPTTFIYSVLVHTYGVEMRIEDA 295
Query: 534 CKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPP 583
+ ++ + P Y L+ + F++A ++ M+ HG P
Sbjct: 296 VATFLDMEKD-GIVPDVVVYNALVTAFCKVKKFENAFRVMDDMEGHGIAP 344
>gi|15235288|ref|NP_193742.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75098720|sp|O49436.1|PP327_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At4g20090; AltName: Full=Protein EMBRYO DEFECTIVE 1025
gi|2827663|emb|CAA16617.1| membrane-associated salt-inducible-like protein [Arabidopsis
thaliana]
gi|7268804|emb|CAB79009.1| membrane-associated salt-inducible-like protein [Arabidopsis
thaliana]
gi|58013024|gb|AAW62965.1| embryo-defective 1025 [Arabidopsis thaliana]
gi|332658871|gb|AEE84271.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 660
Score = 57.0 bits (136), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 80/351 (22%), Positives = 139/351 (39%), Gaps = 48/351 (13%)
Query: 304 YNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAM 363
YN + L ++ + R K++D M KG T ++ + + +AV L E +
Sbjct: 260 YNVLIDGLCKKGDLTRVTKLVDNMFLKGCVPNEVTYNTLIHGLCLKGKLDKAVSLLERMV 319
Query: 364 ACKNKPSVNCCTFLLRKIVVSKQLD--MRLFSKVVRVFRENGNVLTDAMLNSVLKALISV 421
+ K P+ L+ +V ++ +RL S + E G L + + ++ L
Sbjct: 320 SSKCIPNDVTYGTLINGLVKQRRATDAVRLLSSM----EERGYHLNQHIYSVLISGLFKE 375
Query: 422 GRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMW 481
G+ E + + M E G + + S + L GK +EA E ++ M ASG +
Sbjct: 376 GKAEEAMSLWRKMAEKGCKPNIVVYSVLVDGLCREGKPNEAKEILNRMIASGCLPNAYTY 435
Query: 482 VSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAID--------- 532
SL+KG G ++A +++M +K G S + +L++ C R +
Sbjct: 436 SSLMKGFFKTGLCEEAVQVWKEM-DKTGCSRNKFCYSVLIDGLCGVGRVKEAMMVWSKML 494
Query: 533 --------------------------ACKFVHN--CVREYDLKPWHTTYEELIKNLLVQR 564
A K H C E +P TY L+ L +Q+
Sbjct: 495 TIGIKPDTVAYSSIIKGLCGIGSMDAALKLYHEMLCQEEPKSQPDVVTYNILLDGLCMQK 554
Query: 565 GFKDALSLLCLMKDHGFPPFV---DPFIKYVS-KSGTSDDAIAFLKGMTSK 611
A+ LL M D G P V + F+ +S KS + D +FL+ + +
Sbjct: 555 DISRAVDLLNSMLDRGCDPDVITCNTFLNTLSEKSNSCDKGRSFLEELVVR 605
Score = 52.4 bits (124), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 71/329 (21%), Positives = 130/329 (39%), Gaps = 19/329 (5%)
Query: 317 IDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSV--NCC 374
+D F +++DE R K +++ VL + ++ Y++ + ++ N
Sbjct: 132 VDLFHRMVDEFRCK---RSVKSFNSVLNVIINEGLYHRGLEFYDYVVNSNMNMNISPNGL 188
Query: 375 TFLLRKIVVSKQLDMRLFSKVVRVFR--ENGNVLTDA-MLNSVLKALISVGRMGECNKIL 431
+F +V+ +R + + VFR L D +++ L R+ E +L
Sbjct: 189 SF---NLVIKALCKLRFVDRAIEVFRGMPERKCLPDGYTYCTLMDGLCKEERIDEAVLLL 245
Query: 432 KAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVA 491
M+ G S + + + L G + +D+M G + + +LI G C+
Sbjct: 246 DEMQSEGCSPSPVIYNVLIDGLCKKGDLTRVTKLVDNMFLKGCVPNEVTYNTLIHGLCLK 305
Query: 492 GDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNC-VREYDLKPWH 550
G LDKA ++MV + + L+N + RA DA + + + R Y L
Sbjct: 306 GKLDKAVSLLERMVSSKCIPN-DVTYGTLINGLVKQRRATDAVRLLSSMEERGYHLN--Q 362
Query: 551 TTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFV---DPFIKYVSKSGTSDDAIAFLKG 607
Y LI L + ++A+SL M + G P + + + + G ++A L
Sbjct: 363 HIYSVLISGLFKEGKAEEAMSLWRKMAEKGCKPNIVVYSVLVDGLCREGKPNEAKEILNR 422
Query: 608 M-TSKRFPSMSVVLCLFAAFFQARRHSEA 635
M S P+ L FF+ EA
Sbjct: 423 MIASGCLPNAYTYSSLMKGFFKTGLCEEA 451
>gi|15234269|ref|NP_192906.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75213756|sp|Q9T0D6.1|PP306_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g11690
gi|4539460|emb|CAB39940.1| putative protein [Arabidopsis thaliana]
gi|7267869|emb|CAB78212.1| putative protein [Arabidopsis thaliana]
gi|91806660|gb|ABE66057.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|332657639|gb|AEE83039.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 566
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 52/203 (25%), Positives = 84/203 (41%), Gaps = 5/203 (2%)
Query: 412 NSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEA 471
N V+ L GR + ++ M E G + + + L K +EAN+ +D M++
Sbjct: 272 NCVMNQLCKDGRTKDAFQVFDEMRERGVSCNIVTYNTLIGGLCREMKLNEANKVVDQMKS 331
Query: 472 SGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAI 531
G + + +LI G C G L KA + + + G S + ++LV+ +C K
Sbjct: 332 DGINPNLITYNTLIDGFCGVGKLGKALSLCRDL-KSRGLSPSLVTYNILVSGFCRKGDTS 390
Query: 532 DACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPF--- 588
A K V + E +KP TY LI + A+ L M++ G P V +
Sbjct: 391 GAAKMVKE-MEERGIKPSKVTYTILIDTFARSDNMEKAIQLRLSMEELGLVPDVHTYSVL 449
Query: 589 IKYVSKSGTSDDAIAFLKGMTSK 611
I G ++A K M K
Sbjct: 450 IHGFCIKGQMNEASRLFKSMVEK 472
Score = 55.5 bits (132), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 67/295 (22%), Positives = 116/295 (39%), Gaps = 32/295 (10%)
Query: 303 SYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFA 362
+YN + + L ++ ++V DEMR +G + T ++G + EA + +
Sbjct: 270 TYNCVMNQLCKDGRTKDAFQVFDEMRERGVSCNIVTYNTLIGGLCREMKLNEANKVVDQM 329
Query: 363 MACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVG 422
+ P++ L+ +L L + R + G + N ++ G
Sbjct: 330 KSDGINPNLITYNTLIDGFCGVGKLGKAL--SLCRDLKSRGLSPSLVTYNILVSGFCRKG 387
Query: 423 RMGECNKILKAMEEGG--------------FIASSNMKSKIAFRLSSAGKKDEANEFMDH 468
K++K MEE G F S NM+ I RLS
Sbjct: 388 DTSGAAKMVKEMEERGIKPSKVTYTILIDTFARSDNMEKAIQLRLS-------------- 433
Query: 469 MEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKN 528
ME G + LI G C+ G +++A+ F+ MVEK + + ++ YC +
Sbjct: 434 MEELGLVPDVHTYSVLIHGFCIKGQMNEASRLFKSMVEKNCEPNE-VIYNTMILGYCKEG 492
Query: 529 RAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPP 583
+ A K + + E +L P +Y +I+ L +R K+A L+ M D G P
Sbjct: 493 SSYRALKLLKE-MEEKELAPNVASYRYMIEVLCKERKSKEAERLVEKMIDSGIDP 546
>gi|147797511|emb|CAN71434.1| hypothetical protein VITISV_010168 [Vitis vinifera]
Length = 814
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 82/393 (20%), Positives = 146/393 (37%), Gaps = 50/393 (12%)
Query: 254 VERQLRDLNVTFSNDLVKFVVDKLGDEPKK--ALIFFRWAEESGFVKHDESSYNAMASVL 311
V+ +R +FS V+D L + K AL FR G K + YN + L
Sbjct: 409 VKEMVRPXTTSFS-----IVIDGLCNTGKLDLALSLFRDMVRVG-CKQNVLLYNNLIDKL 462
Query: 312 GREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSV 371
+ ++ + +L EM+ G+ T + G R V A+D+ ++P +
Sbjct: 463 SNSNRLEECYLLLKEMKGSGFRPTQFTHNSIFGCLCRREDVTGALDMVREMRVHGHEPWI 522
Query: 372 NCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKIL 431
T L++++ K+ + + + RE G + ++ + + + + + +I
Sbjct: 523 KHYTLLVKQLCKRKR-SAEACNFLAEMVRE-GFLPDIVAYSAAIDGFVKIKAVDQALEIF 580
Query: 432 KAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVA 491
+ + G+ + + + EA++ +D M A G + LI G C
Sbjct: 581 RDICARGYCPDVVAYNTLINGFCKVKRVSEAHDILDEMVAKGLVPSVVTYNLLIDGWCKN 640
Query: 492 GDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHT 551
GD+D+A C +MV KE RE P
Sbjct: 641 GDIDQAFHCLSRMVGKE---------------------------------RE----PNVI 663
Query: 552 TYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPFIKYV---SKSGTSDDAIAFLKGM 608
TY LI L DA+ L M+ G P FI + K G D A+ + + M
Sbjct: 664 TYTTLIDGLCNAGRPDDAIHLWNEMRGKGCSPNRISFIALIHGLCKCGWPDAALLYFREM 723
Query: 609 TSKRFPSMSVVLCLFAAFFQARRHSEAQDLLSK 641
+ P V + L +F + + A ++L +
Sbjct: 724 GERETPDTIVYVALITSFISNKNPTLAFEILKE 756
Score = 56.6 bits (135), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 135/642 (21%), Positives = 244/642 (38%), Gaps = 96/642 (14%)
Query: 42 HTLSSLLPTSSHTFYSRFSRLPICYSRLINLIDPKNPNFRNPMICSYSSEPAMEQKESDF 101
+T SL + TF S+F RL IC + P + N +I ++ +P
Sbjct: 30 YTQKSLFTQNLSTF-SQFLRL-ICTKSSASFSSPHGAHITNALISIFTKQP--------- 78
Query: 102 TVVSDIFYKFSDVNDISKQLELSGVVFTHEMVLKVLKNLESSPDEARRFFNWVLEKESER 161
N +++L G + THE+V VL L+S A RFFNW ++
Sbjct: 79 ------------FNPDNQELRNFGSMLTHEVVENVLSGLKSW-KIAYRFFNWASDQGGFN 125
Query: 162 LSSKTYNLMLRIVGVHGLVQEFWGLVDV--------MKKKGYGVASH------VRNKMTE 207
+ TYN M + H L+ + M G S V ++ E
Sbjct: 126 HNCYTYNAMASCLS-HARQNAPLSLLSMDIVNSRCAMSPGALGAISKSGSIDLVEMRLKE 184
Query: 208 KFEKEGLESDLEKLKGIFATGSIDNSIEKVASRICKVVRSDIWGDDVERQLRDLNVTFSN 267
+ G E D L + +K S V ++I+G R D +V
Sbjct: 185 MCD-SGWEPDKYTLTSVLQAYCNSRKFDKALS-----VFNEIYG----RGWVDGHVL--- 231
Query: 268 DLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEM 327
++ K G E KA E+ G ++ +E ++ + R+ +D+ ++ +M
Sbjct: 232 SILVLTFSKCG-EVDKAFELIERMEDLG-IRLNEKTFCVLIHGFVRQSRVDKALQLFKKM 289
Query: 328 RSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIV--VSK 385
+ G+ ++ ++G + +++A+ L P + +L K++ S+
Sbjct: 290 QKSGFAPDVSVYDALIGGLCAKKEIEKALHLLSEMKELGIDPDIQ----ILSKLIPYCSE 345
Query: 386 QLDMRLFSKVVRVFRENGNVL-TDAML---NSVLKALISVGRMGECNKILKAM------- 434
++D + R+ E L T+AML NSVL L++ + + +L AM
Sbjct: 346 EVD------IYRLIEERLEDLDTEAMLLLYNSVLNGLVNGKSVDKAYYLLXAMTGDNYTD 399
Query: 435 --EEGGFIASSNMK-------SKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLI 485
E F M S + L + GK D A M G ++ +LI
Sbjct: 400 NFEVNKFFMVKEMVRPXTTSFSIVIDGLCNTGKLDLALSLFRDMVRVGCKQNVLLYNNLI 459
Query: 486 KGHCVAGDLDKAADCFQKMVEKEGTSH--AGYAIDLLVNTYCSKNRAIDACKFVHNCVRE 543
+ ++ +C+ + E +G+ + + + C + A V +R
Sbjct: 460 DK---LSNSNRLEECYLLLKEMKGSGFRPTQFTHNSIFGCLCRREDVTGALDMVRE-MRV 515
Query: 544 YDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPF---IKYVSKSGTSDD 600
+ +PW Y L+K L ++ +A + L M GF P + + I K D
Sbjct: 516 HGHEPWIKHYTLLVKQLCKRKRSAEACNFLAEMVREGFLPDIVAYSAAIDGFVKIKAVDQ 575
Query: 601 AIAFLKGMTSKRF-PSMSVVLCLFAAFFQARRHSEAQDLLSK 641
A+ + + ++ + P + L F + +R SEA D+L +
Sbjct: 576 ALEIFRDICARGYCPDVVAYNTLINGFCKVKRVSEAHDILDE 617
>gi|255660798|gb|ACU25568.1| pentatricopeptide repeat-containing protein [Verbena intermedia]
Length = 418
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 63/292 (21%), Positives = 112/292 (38%), Gaps = 5/292 (1%)
Query: 266 SNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLD 325
+ L++ VV + G A +F E G + D ++ + + + +
Sbjct: 32 AKTLIQIVVSRKGKGSASA-VFAAILETKGTQRSDIYVFSGLITAYLESGFLRDAIECYR 90
Query: 326 EMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSK 385
+ + + +TC KVL + K YE + C S+ L+ V K
Sbjct: 91 LTKEHKFRVPFDTCRKVLEHLMKLKYFKLVWGFYEENLECGYPASLYFFNILMHSFV--K 148
Query: 386 QLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNM 445
+ ++RL V + G + N+++ I +G + E ++ AM+ G
Sbjct: 149 EGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLNEGFRLKNAMQASGVQPDVYT 208
Query: 446 KSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMV 505
S + L K D+AN D M G + +LI GHC G +D A + +++M+
Sbjct: 209 YSVLINGLCKESKMDDANVLFDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQML 268
Query: 506 EKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELI 557
+ S + L+ C K A + + + LKP TY LI
Sbjct: 269 S-QSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMIMK-GLKPDKITYTTLI 318
Score = 48.9 bits (115), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 47/196 (23%), Positives = 80/196 (40%), Gaps = 13/196 (6%)
Query: 401 ENGNVLTDAMLN-----------SVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKI 449
++ NVL D ML+ +++ GR+ +I K M + +
Sbjct: 223 DDANVLFDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTL 282
Query: 450 AFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEG 509
+ L G +A + +D M G + +LI G+C GDL+ A + ++M+ KE
Sbjct: 283 IYGLCKKGDLKQAQDLIDEMIMKGLKPDKITYTTLIDGNCKEGDLETAFEYRKRMI-KEN 341
Query: 510 TSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDA 569
A L++ C + R++DA K + + LKP TY +I +
Sbjct: 342 IRLDDVAYTALISGLCQEGRSVDAEKMLREML-SVGLKPEIGTYTMIINEFCKKGDVWTG 400
Query: 570 LSLLCLMKDHGFPPFV 585
LL M+ G+ P V
Sbjct: 401 SKLLKEMQRDGYMPSV 416
>gi|225443015|ref|XP_002267278.1| PREDICTED: pentatricopeptide repeat-containing protein At1g52640,
mitochondrial-like [Vitis vinifera]
Length = 624
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 83/426 (19%), Positives = 155/426 (36%), Gaps = 41/426 (9%)
Query: 253 DVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLG 312
D+ER L + + LV+ V+ + + A FF WA+ +H + SY+ + +LG
Sbjct: 66 DLERPLTAFSQKITPGLVEQVLKRCKNLGFSAHRFFLWAKRLPGFEHSKESYHILVDILG 125
Query: 313 REDCIDRFWKVLDEMR-SKGYEMEMETCVKVLGRFSERNMVKEAVDLYE----------- 360
W L +MR ++ E+ E + + N+ +A+ +
Sbjct: 126 SSKQFPLIWDFLSDMRETRCCEICPEIFWLIFRAYCRANLPGDAIRAFHQMGDFGVKAGV 185
Query: 361 ------FAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVF--------------- 399
+ CK K V K+ V + + +S ++R +
Sbjct: 186 GDVDQLLYVLCKRK-HVKQAQEFFDKVNVEVMPNAKTYSILMRGWGDVGDSSEARKLFEE 244
Query: 400 -RENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGK 458
RE G + NS+L+AL G + E K+ + M G + S
Sbjct: 245 MRERGCAVDVVAYNSLLEALCKGGNVDEAYKLFREMGSNGLAPDACSYSIFIRAYCEVND 304
Query: 459 KDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAID 518
A + +D M + ++K C + +D+A +M+E+ G S ++ +
Sbjct: 305 IHSAFQVLDRMRRYNLVPNVFTYNCIVKKLCKSEKVDEAYQLLDEMIER-GVSPDLWSYN 363
Query: 519 LLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKD 578
+ +C A + + +E + P TY ++K LL F + M++
Sbjct: 364 AIQAFHCDHCEVNKALRLISRMEKE-NCMPDRHTYNMVLKMLLRVGRFDRVTDVWGGMEE 422
Query: 579 HGFPPFVDPFI----KYVSKSGTSDDAIAFLKGMTSKRFPSMSVVLCLFAAFFQARRHSE 634
GF P + + K G ++A + + M P S + L SE
Sbjct: 423 RGFYPAASTYAVMVHGFCKKKGKLEEACKYFEMMIDDGIPPYSCTVELLRNRVIGLGFSE 482
Query: 635 AQDLLS 640
D+L+
Sbjct: 483 QIDVLA 488
Score = 43.9 bits (102), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 88/423 (20%), Positives = 159/423 (37%), Gaps = 65/423 (15%)
Query: 104 VSDIFYKFSDVNDISKQLELSGVVFTH-------EMVLKVLKNLESSPDEARRFFNWVLE 156
+++I SD D LE F+ E VLK KNL S A RFF W
Sbjct: 50 INEISRILSDFRDPHHDLERPLTAFSQKITPGLVEQVLKRCKNLGFS---AHRFFLWAKR 106
Query: 157 KESERLSSKTYNLMLRIVGVHGLVQEFWG-LVDVMKKKGYGVASHVRNKMTEKFEKEGLE 215
S ++Y++++ I+G W L D+ + + + + + + + L
Sbjct: 107 LPGFEHSKESYHILVDILGSSKQFPLIWDFLSDMRETRCCEICPEIFWLIFRAYCRANLP 166
Query: 216 SDLEKL---KGIFATGSIDNSIEKVASRICK---VVRSDIWGDDVERQLRDLNVTFSNDL 269
D + G F + ++++ +CK V ++ + D V ++ T+S +
Sbjct: 167 GDAIRAFHQMGDFGVKAGVGDVDQLLYVLCKRKHVKQAQEFFDKVNVEVMPNAKTYS--I 224
Query: 270 VKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRS 329
+ +GD + +F E V D +YN++ L + +D +K+ EM S
Sbjct: 225 LMRGWGDVGDSSEARKLFEEMRERGCAV--DVVAYNSLLEALCKGGNVDEAYKLFREMGS 282
Query: 330 KGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLD- 388
G + + + + E N + A + + P+V +++K+ S+++D
Sbjct: 283 NGLAPDACSYSIFIRAYCEVNDIHSAFQVLDRMRRYNLVPNVFTYNCIVKKLCKSEKVDE 342
Query: 389 ------------------------------------MRLFSKVVRVFRENGNVLTD-AML 411
+RL S++ E N + D
Sbjct: 343 AYQLLDEMIERGVSPDLWSYNAIQAFHCDHCEVNKALRLISRM-----EKENCMPDRHTY 397
Query: 412 NSVLKALISVGRMGECNKILKAMEEGGFI-ASSNMKSKIAFRLSSAGKKDEANEFMDHME 470
N VLK L+ VGR + MEE GF A+S + GK +EA ++ + M
Sbjct: 398 NMVLKMLLRVGRFDRVTDVWGGMEERGFYPAASTYAVMVHGFCKKKGKLEEACKYFEMMI 457
Query: 471 ASG 473
G
Sbjct: 458 DDG 460
>gi|125561476|gb|EAZ06924.1| hypothetical protein OsI_29163 [Oryza sativa Indica Group]
Length = 687
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 47/185 (25%), Positives = 70/185 (37%), Gaps = 2/185 (1%)
Query: 412 NSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEA 471
N +L L GRMGE + +L M + S + LS G
Sbjct: 270 NVLLSGLCRAGRMGETSALLDEMASQKMVPDGFTYSILFDGLSRNGDSKAMLSLFGKSLK 329
Query: 472 SGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAI 531
+G +GD L+ G C G + A + Q +V G + L+N YC +
Sbjct: 330 NGVTIGDYTCSILLNGLCKDGKVSIAEEVLQSLVNA-GLVPTRVIYNTLINGYCQTGE-L 387
Query: 532 DACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPFIKY 591
+ ++ +KP H TY LI L +A LL M+D+G P V+ F
Sbjct: 388 EGAFSTFGQMKSRHIKPDHITYNALINGLCKAERITNAQDLLMEMQDNGVNPTVETFNTL 447
Query: 592 VSKSG 596
+ G
Sbjct: 448 IDAYG 452
Score = 50.1 bits (118), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 56/258 (21%), Positives = 107/258 (41%), Gaps = 6/258 (2%)
Query: 399 FRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGK 458
++NG T N+++ A G++ +C +L M+E G + I GK
Sbjct: 432 MQDNGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAFCKNGK 491
Query: 459 KDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAID 518
EA +D M +++ ++I + G D+A +KM + G S + +
Sbjct: 492 IPEAVAILDDMFHKDVLPNAQVYNAIIDAYVEHGPNDQAFILVEKM-KSNGISPSIVTYN 550
Query: 519 LLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKD 578
LL+ C++++ +A + + N + + L P +Y LI + AL L M
Sbjct: 551 LLIKGLCNQSQISEAEEII-NSLSNHRLIPDAVSYNTLISACCYRGNIDKALDLQQRMHK 609
Query: 579 HGFPPFVDPFIKYVSKSGTSDDAIA----FLKGMTSKRFPSMSVVLCLFAAFFQARRHSE 634
+G V + + +S G + I + K M + PS ++ + A+ + +
Sbjct: 610 YGIKSTVRTYHQLISGLGGAGRLIEMEYLYQKMMQNNVVPSNAIHNIMVEAYSKYGNEIK 669
Query: 635 AQDLLSKCPRYVRNHADV 652
A+DL + + NH D
Sbjct: 670 AEDLRKEMLQKRNNHDDT 687
>gi|449442128|ref|XP_004138834.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22670,
mitochondrial-like [Cucumis sativus]
Length = 591
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 69/322 (21%), Positives = 130/322 (40%), Gaps = 13/322 (4%)
Query: 266 SNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLD 325
SN LV ++ + ++ +A F+WA++ +H SYN+M +LG+ W+++D
Sbjct: 172 SNTLVAQLLKRFHNDWIQAYGIFKWAKDQIPYRHSPESYNSMVDILGKAKNFRLMWELVD 231
Query: 326 EMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSK 385
EM + +ET KV+ R + +EA+ + L+ +V
Sbjct: 232 EMNHLAGSVSLETMSKVIRRLARAGRHQEAIHAFRNIEKYGISTDTTAMNVLMDALVKEA 291
Query: 386 QLDMRLFSKVVRVFRENGNVL--TDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASS 443
++ VFRE + A N ++ ++ E KI+ +E+ G
Sbjct: 292 SVE-----DAHNVFRELKCSIPFNLASFNVLIHGYCKAKKLDEAWKIMGEVEKSGL--EP 344
Query: 444 NMKSKIAFRLSSAGKKD--EANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCF 501
++ S AF + +KD ++ + ME G + ++ A +++A +
Sbjct: 345 DVISYTAFIEAHCREKDFRNVDKVLVQMEHKGCKPNVITFTIIMHALGKAKQINEALKVY 404
Query: 502 QKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLL 561
+KM +KEG L+ R D + V + + + + P TY LI
Sbjct: 405 EKM-KKEGCVPDSSFYSSLIFILGKAGRLTDVKEIVED-MEKQGVTPDVLTYNTLISCAC 462
Query: 562 VQRGFKDALSLLCLMKDHGFPP 583
+ AL+LL M++ P
Sbjct: 463 AHSQEETALTLLLKMEEVSCKP 484
Score = 47.0 bits (110), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 86/434 (19%), Positives = 167/434 (38%), Gaps = 50/434 (11%)
Query: 110 KFSDVNDISKQLELSGVVFTHEMVLKVLKNLESSPDEARRFFNWVLEKESERLSSKTYNL 169
++ ++++ L ++ +V ++LK + +A F W ++ R S ++YN
Sbjct: 153 RYPSPENVAEALNGKAYRVSNTLVAQLLKRFHNDWIQAYGIFKWAKDQIPYRHSPESYNS 212
Query: 170 MLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRNKMTEKFEKEGLESD-LEKLKGIFATG 228
M+ I+G + W LVD M V+ +K+ + + G + + + I G
Sbjct: 213 MVDILGKAKNFRLMWELVDEMNHLAGSVSLETMSKVIRRLARAGRHQEAIHAFRNIEKYG 272
Query: 229 -SIDNSIEKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIF 287
S D + V + + + +D R+L + +L F V LI
Sbjct: 273 ISTDTTAMNV---LMDALVKEASVEDAHNVFRELKCSIPFNLASFNV----------LIH 319
Query: 288 FRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFS 347
G+ K + +D WK++ E+ G E ++ + +
Sbjct: 320 -------GYCKAKK---------------LDEAWKIMGEVEKSGLEPDVISYTAFIEAHC 357
Query: 348 E----RNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENG 403
RN+ K V + C KP+V T ++ + +KQ++ L KV ++ G
Sbjct: 358 REKDFRNVDKVLVQMEH--KGC--KPNVITFTIIMHALGKAKQINEAL--KVYEKMKKEG 411
Query: 404 NVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEAN 463
V + +S++ L GR+ + +I++ ME+ G + + + +++ A
Sbjct: 412 CVPDSSFYSSLIFILGKAGRLTDVKEIVEDMEKQGVTPDVLTYNTLISCACAHSQEETAL 471
Query: 464 EFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAG-YAIDLLVN 522
+ ME K + L+K C + M + + + AG YAI LV
Sbjct: 472 TLLLKMEEVSCKPDLKTYHPLLKMFCRKKRMKVLKFLLDHMFKNDVSIEAGTYAI--LVR 529
Query: 523 TYCSKNRAIDACKF 536
C + AC F
Sbjct: 530 GLCENGKLHLACSF 543
>gi|410109885|gb|AFV61022.1| pentatricopeptide repeat-containing protein 11, partial
[Coelocarpum swinglei]
Length = 429
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 63/292 (21%), Positives = 113/292 (38%), Gaps = 5/292 (1%)
Query: 266 SNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLD 325
+ +L++ VV + G A +F E G + D ++ + + + +
Sbjct: 36 AKNLIQVVVSRKGKNSASA-VFAAILETQGTQRSDIYVFSGLITAYLESGFLRDAIECYR 94
Query: 326 EMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSK 385
R + + +TC KVL + K Y+ + C S+ L+ + K
Sbjct: 95 LTREHKFWVPFDTCRKVLEHLMKLKYFKLVWXFYKEILECGYPASLYFFNILMHRFC--K 152
Query: 386 QLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNM 445
+ D+R+ V + G + N+++ I +G + E ++ AM G
Sbjct: 153 EGDIRVALSVFDAITKWGLRPSVVSFNTLMNGYIRLGDLDEGFRLKSAMHASGVQPDVYT 212
Query: 446 KSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMV 505
S + L K D+ANE D M G + +LI GHC G +D A + +++M+
Sbjct: 213 YSVLINGLCKESKMDDANELFDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEVYKQML 272
Query: 506 EKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELI 557
+ S + L+ C K A + +R LKP +Y LI
Sbjct: 273 S-QSLSPDLITYNTLIYGLCKKGDLKQAQDLIDE-MRMKGLKPDKISYTTLI 322
Score = 43.1 bits (100), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 47/220 (21%), Positives = 87/220 (39%), Gaps = 8/220 (3%)
Query: 368 KPSVNCCTFLLRKIVVSKQLD--MRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMG 425
+P V + L+ + ++D LF +++ + G V +++ GR+
Sbjct: 207 QPDVYTYSVLINGLCKESKMDDANELFDEML----DKGLVPNGVTFTTLIDGHCKNGRVD 262
Query: 426 ECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLI 485
++ K M + + + L G +A + +D M G + +LI
Sbjct: 263 LAMEVYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMRMKGLKPDKISYTTLI 322
Query: 486 KGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYD 545
G C GDL+ A + ++M++ E A L++ C + R+IDA K + +
Sbjct: 323 DGCCKEGDLETAFEHRKRMIQ-ENIRLDDVAYTALISGLCQEGRSIDAEKMLREML-SVG 380
Query: 546 LKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFV 585
L+P TY +I + LL M+ G P V
Sbjct: 381 LRPDTGTYTMIINEFCKKGDVWTGSKLLKEMQRDGHVPSV 420
>gi|356517665|ref|XP_003527507.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20300,
mitochondrial-like [Glycine max]
Length = 564
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 52/264 (19%), Positives = 109/264 (41%), Gaps = 10/264 (3%)
Query: 283 KALIFFRWAEE-SGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVK 341
++L FF W+ GF E YN M + G+ D W V+D M+S+G E+ + T
Sbjct: 160 QSLAFFNWSSSLDGFPASPEP-YNEMLDLAGKLRQFDLAWHVIDLMKSRGVEITVHTFSA 218
Query: 342 VLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLD--MRLFSKVVRVF 399
++ R+ + EAV + P + + ++ + ++ + F + F
Sbjct: 219 LVRRYVRAGLAAEAVHAFNRMEDYGCTPDMVAFSIVISSLCKKRRANEAQSFFDSLKHRF 278
Query: 400 RENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKK 459
+ V T S++ G + + ++ M+ G + S + L G+
Sbjct: 279 EPDVVVYT-----SLVHGWCRAGDISKAEEVFSDMKMAGIKPNVYTYSIVIDSLCRCGQI 333
Query: 460 DEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDL 519
A++ M +G D + SL++ H AG +K + +M ++ G + +
Sbjct: 334 TRAHDVFSEMIDAGCDPNAVTFNSLMRVHVKAGRTEKVLKVYNQM-KRLGCPADTISYNF 392
Query: 520 LVNTYCSKNRAIDACKFVHNCVRE 543
++ ++C +A K ++ V++
Sbjct: 393 IIESHCRDENLEEAAKILNLMVKK 416
Score = 40.0 bits (92), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 33/68 (48%)
Query: 150 FFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRNKMTEKF 209
FFNW + S + YN ML + G W ++D+MK +G + H + + ++
Sbjct: 164 FFNWSSSLDGFPASPEPYNEMLDLAGKLRQFDLAWHVIDLMKSRGVEITVHTFSALVRRY 223
Query: 210 EKEGLESD 217
+ GL ++
Sbjct: 224 VRAGLAAE 231
>gi|125562731|gb|EAZ08111.1| hypothetical protein OsI_30376 [Oryza sativa Indica Group]
Length = 794
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 76/357 (21%), Positives = 145/357 (40%), Gaps = 23/357 (6%)
Query: 300 DESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEME--TCVKVLGRFSERNMVKEAVD 357
DE +YNA S L + ++ ++ L ++ G+ + ++ +C+ + G F R E
Sbjct: 276 DEVTYNAFLSGLCKVGRVNEAFQRLVMLQDGGFALGLKGYSCL-IDGLFQARRF-DEGFG 333
Query: 358 LYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKA 417
Y+ + P V T ++R + +++ L + V ++ G V N+VLK
Sbjct: 334 YYKTMLERNISPDVVLYTIMIRGCAEAGRIEDAL--SFLDVMKKKGFVPDTFCYNTVLKV 391
Query: 418 LISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVG 477
L G + + + M + + S ++ + L G DEA + D M G D
Sbjct: 392 LCDHGDLERAHTLRSEMLQNNLVLDSTTQTIMICGLCKRGLVDEAMQIFDEMGEHGCDPT 451
Query: 478 DKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTS------------HAGYAIDLLVNTYC 525
+ +LI G G L++A F KM S ++ LV+ C
Sbjct: 452 VMTYNALIDGFYREGRLEEARMLFHKMEMGNNPSLFLRLTLGANQVRDSESLRKLVHDMC 511
Query: 526 SKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPP-- 583
+ + A K + + + + + P TY LI L R A+ L ++ G P
Sbjct: 512 QSGQVLKAYKLLRSII-DSGVVPDVVTYNTLINGLCKARNLDGAVRLFKELQLKGISPDE 570
Query: 584 -FVDPFIKYVSKSGTSDDAIAFLKG-MTSKRFPSMSVVLCLFAAFFQARRHSEAQDL 638
I + ++ +DA+ + + S PS+S+ + + + ++ S+A +L
Sbjct: 571 ITYGTLIDGLLRAHRENDAMMLFQNILQSGSSPSLSIYNSMMRSLCRMKKLSQAINL 627
Score = 50.1 bits (118), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 60/272 (22%), Positives = 113/272 (41%), Gaps = 20/272 (7%)
Query: 320 FWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLR 379
+ L + R+ G ++ S +AV + +++P+ +L+
Sbjct: 121 MFDALADARAAGLPASSSAFAALVAAHSSAGRHADAVQAFSRMDEFQSRPTAFVYNTILK 180
Query: 380 KIVVSK--QLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEG 437
+V S L + L++++V G A N ++ L G G+ K+ M +
Sbjct: 181 ALVDSGVILLALALYNRMVAA----GCAPNRATYNVLMDGLCKQGMAGDALKMFDEMLDR 236
Query: 438 GFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKA 497
G + + + + + L +AGK DEA + + M+ G + + + + G C G +++A
Sbjct: 237 GIMPNVKIYTVLLSSLCNAGKIDEAVQLLGSMKDKGCLPDEVTYNAFLSGLCKVGRVNEA 296
Query: 498 ADCFQKMVEKEGTSHA----GYA--IDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHT 551
FQ++V + A GY+ ID L + R D + + E ++ P
Sbjct: 297 ---FQRLVMLQDGGFALGLKGYSCLIDGLF-----QARRFDEGFGYYKTMLERNISPDVV 348
Query: 552 TYEELIKNLLVQRGFKDALSLLCLMKDHGFPP 583
Y +I+ +DALS L +MK GF P
Sbjct: 349 LYTIMIRGCAEAGRIEDALSFLDVMKKKGFVP 380
>gi|449499490|ref|XP_004160831.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06710,
mitochondrial-like [Cucumis sativus]
Length = 1000
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 86/389 (22%), Positives = 164/389 (42%), Gaps = 38/389 (9%)
Query: 294 SGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVK 353
+GFV D S+Y+ + L ++ + + EM+ G ++ T ++ FS+ ++K
Sbjct: 483 NGFVP-DTSTYSEVIGFLCNASRVENAFFLFKEMKGTGVVPDVYTYTILIDCFSKAGIIK 541
Query: 354 EAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENG---NVLT-DA 409
+A + + + +P+V T L+ + +K++ + +++ + G NV+T A
Sbjct: 542 QAHNWLDEMVRDGCEPTVVTYTTLIHAYLKAKKVSVA--NELFELMIAKGCFPNVITYTA 599
Query: 410 MLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFR----------------L 453
+++ K+ G + + +I M I +M KI L
Sbjct: 600 LIDGYCKS----GNIEKACQIYARMRGDADIPDVDMYFKIKNNVAEKPNVVTYGALVDGL 655
Query: 454 SSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHA 513
A K +A + ++ M G + ++ +LI G C A LD+A + F KMVE+ G +
Sbjct: 656 CKAHKVKDARDLLETMFVDGCEPNTIVYDALIDGFCKAAKLDEAQEVFHKMVER-GYNPN 714
Query: 514 GYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLL 573
Y L++ K++ +D V + + E P Y E+I L +A L+
Sbjct: 715 VYTYSSLIDRL-FKDKRLDLVLKVLSKMLENSCAPNIVIYTEMIDGLSKVAKTDEAYKLM 773
Query: 574 CLMKDHGFPPFVDPFIKYV---SKSGTSDDAIAFLKGMTSKRFPSMSVVLCLFAAFFQAR 630
+M++ G P V + + K+G D + + M SK V + A
Sbjct: 774 LMMEEKGCKPNVVTYTAMIDGFGKAGKVDKCLELFREMGSKGCAPNFVTYTVLINHCCAT 833
Query: 631 RH-SEAQDLLSKC-----PRYVRNHADVL 653
H EA LL + P++V ++ V+
Sbjct: 834 GHLDEAYALLEEMKQTYWPKHVSSYCKVI 862
>gi|168047804|ref|XP_001776359.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162672319|gb|EDQ58858.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 499
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 66/294 (22%), Positives = 119/294 (40%), Gaps = 14/294 (4%)
Query: 273 VVDKLGDEPK--KALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSK 330
++D LG KA F G V YN++ LGR D K+ EM SK
Sbjct: 200 MIDGLGKSGHVDKAFFLFEEMTSEGLVA-TRVVYNSLIHGLGRSGRADAAAKLFREMLSK 258
Query: 331 GYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLD-- 388
G + + T ++ EA +++ A VN L+ + SK+LD
Sbjct: 259 GLQPDHVTFTSLVYGLGVAGRASEARRIFQEARDVGCALDVNLYNVLIDTLCKSKRLDEA 318
Query: 389 MRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSK 448
+F ++ E+G V N+++ L GR+ + +L M+ G + +
Sbjct: 319 WEIFGEL----EEDGLVPDVYTFNALMDGLCKSGRIHDAFILLGDMKRAGCTPDVTVYNT 374
Query: 449 IAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKE 508
+ L +G+ +EA + + M++ G + + +LI C G ++ A F+++ K
Sbjct: 375 LIDGLRKSGRVEEAGQLLLEMQSLGYEPDVVTYNTLIDESCKGGRIEDALRLFEEISAKG 434
Query: 509 GTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREY---DLKPWHTTYEELIKN 559
+ Y + ++N C R +A K + +E + P TY L+
Sbjct: 435 FANTVTY--NTILNGLCMAGRVDEAYKLFNGMKQETVDGVIDPDFVTYTTLLNG 486
Score = 38.9 bits (89), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 68/285 (23%), Positives = 122/285 (42%), Gaps = 14/285 (4%)
Query: 392 FSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAF 451
F K VR R G V + ++++ L R E ++L +E+ +I + ++A
Sbjct: 5 FFKWVRTQR--GGVPSVRACTTLVEMLGIARRFNEAEEVLAEVEKSRYILQPRIFIELAR 62
Query: 452 RLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTS 511
+SAG +++ E + ME + + SLI AG KA ++ M + G
Sbjct: 63 GYASAGLLEKSVEALKRMEGHRCALTASAYNSLIDAFVKAGYTQKALAVYRVM-GQSGLR 121
Query: 512 HAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALS 571
Y ++L+N + K + +D+ + ++ + P TY LI + G + AL
Sbjct: 122 PDTYTFNVLMNAF-KKAKRVDSVWKLFEEMQNQNCSPNVITYSILIDAVCKCGGVEKALK 180
Query: 572 LLCLMKDHGFPPFVDPF---IKYVSKSGTSDDAIAFLKGMTSKRFPSMSVVL-CLFAAFF 627
+ MK G P + + I + KSG D A + MTS+ + VV L
Sbjct: 181 VFLDMKSRGCRPNIFTYTSMIDGLGKSGHVDKAFFLFEEMTSEGLVATRVVYNSLIHGLG 240
Query: 628 QARRHSEA----QDLLSKCPRYVRNHADVLNLLYSKKSGGDSAPA 668
++ R A +++LSK + +H +L+Y G ++ A
Sbjct: 241 RSGRADAAAKLFREMLSKGLQ--PDHVTFTSLVYGLGVAGRASEA 283
>gi|413934354|gb|AFW68905.1| hypothetical protein ZEAMMB73_510949 [Zea mays]
Length = 845
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 89/445 (20%), Positives = 184/445 (41%), Gaps = 27/445 (6%)
Query: 126 VVFTHEMVLKVLKNLESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWG 185
V T+ +++ VL + E EARR F+ + + ++++ T+N+++ G + +
Sbjct: 287 TVVTYNILVDVLCH-EGRMPEARRLFD-EMAQVGIQVNTITFNVLIDGYAKSGQMDQASA 344
Query: 186 LVDVMKKKGYGVASHVRNKMTEKFEKEGLESDLEKLKGIFATGSIDNSIEKVASRICKVV 245
M+ +G S N + + K G + L +F++ + ++ + R+C
Sbjct: 345 AYREMQARGLVPDSCTFNIIAARAHKFGYAAQLVHDHDMFSSHMSADGLDMLVCRLCWDH 404
Query: 246 R-SDIWG---DDVERQLRDLNVTFSNDLVK-FVVDKLGDEPKKALIFFRWAEESGFVKHD 300
R D W +E+ + L VT N L+ + + L +E + +R + G
Sbjct: 405 RLDDAWELLLGAIEQGV-PLRVTGFNALIAAYSKEGLHEEASE---LYRIMNKLGLAP-S 459
Query: 301 ESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYE 360
S++N + L + +D +L+ M SKGY + + + F + N V
Sbjct: 460 SSTFNYLIMGLCNQGRLDEAQLLLEHMVSKGYCLSTSFTICLDAYFRDGNAVG------- 512
Query: 361 FAMAC-KNKPSVNCCT-FLLRKIVVSKQLDMRLFSKVVRVFRE---NGNVLTDAMLNSVL 415
A+ C + ++ T F+ ++ + ++ + F E G V + NS++
Sbjct: 513 -ALKCWDDMGNIGLQTDFIAFSAYINGLCRLDCVNEAYQAFAEMTSRGIVPNNITYNSII 571
Query: 416 KALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSD 475
AL G M E K+++ M + G + + + L GK + + M ++G
Sbjct: 572 SALCKAGNMTEALKLVQNMRQSGLVPDIYTSNILIDGLCREGKLKMVDNLLLDMCSNGLT 631
Query: 476 VGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACK 535
+ ++I +C A D++ A + KM+ G + ++ +++ C + A K
Sbjct: 632 PDTVTYNTIINAYCRAQDMNSAMNFMNKML-VAGCEPDIFTYNIWMHSLCRNHMLNQAGK 690
Query: 536 FVHNCVREYDLKPWHTTYEELIKNL 560
+ V D P TY L+ +
Sbjct: 691 LLDELV-AVDCSPNSVTYNTLMDGI 714
Score = 47.4 bits (111), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 74/314 (23%), Positives = 120/314 (38%), Gaps = 19/314 (6%)
Query: 321 WKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRK 380
W V +EM ++G + T +L F R MV+ A L P V L++
Sbjct: 203 WNVFEEMTAEGPRPSLATFNAMLLGFCHRGMVRVASGLLGIMGKSGIAPDVCSYNILIKG 262
Query: 381 IVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFI 440
V R K+ +G T N ++ L GRM E ++ M + G
Sbjct: 263 HCVFGW--SRDAFKMFEGMHRSGCEPTVVTYNILVDVLCHEGRMPEARRLFDEMAQVGIQ 320
Query: 441 ASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHC----VAGDLDK 496
++ + + + +G+ D+A+ M+A G V D ++I A L
Sbjct: 321 VNTITFNVLIDGYAKSGQMDQASAAYREMQARGL-VPDSCTFNIIAARAHKFGYAAQLVH 379
Query: 497 AADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEEL 556
D F + +G +D+LV C +R DA + + + E + T + L
Sbjct: 380 DHDMFSSHMSADG-------LDMLVCRLCWDHRLDDAWELLLGAI-EQGVPLRVTGFNAL 431
Query: 557 IKNLLVQRGFKDALSLLCLMKDHGFPPFVDPF---IKYVSKSGTSDDAIAFLKGMTSKRF 613
I + ++A L +M G P F I + G D+A L+ M SK +
Sbjct: 432 IAAYSKEGLHEEASELYRIMNKLGLAPSSSTFNYLIMGLCNQGRLDEAQLLLEHMVSKGY 491
Query: 614 P-SMSVVLCLFAAF 626
S S +CL A F
Sbjct: 492 CLSTSFTICLDAYF 505
>gi|255578371|ref|XP_002530052.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223530468|gb|EEF32352.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 554
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 66/290 (22%), Positives = 115/290 (39%), Gaps = 6/290 (2%)
Query: 293 ESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMV 352
+SG VK YNA+ S R ID+ + MR G E ++ T L F + M+
Sbjct: 212 KSGRVKLSTLVYNALISGFCRAGRIDKAQAIKSFMRRNGCEPDLVTYNVFLNYFCDELML 271
Query: 353 KEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAM-L 411
+A L + +P V LL+ I D +++ + L D +
Sbjct: 272 DDAKKLLKLMERSGIEPDVYSYNQLLKGICKGNCPDKAYLLMTNKMWPKG---LCDVVSY 328
Query: 412 NSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEA 471
N+++KA +G K+ + M + G + G + A + +D M
Sbjct: 329 NTIIKAFCKIGDTTSAYKLFEEMGQKGIPPDVVTFTIFIKAFLGKGSFNIAKKLLDQMTE 388
Query: 472 SGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAI 531
G + ++I C +G ++ A F MVE +G S + + L+N +C +R
Sbjct: 389 MGLSPDCIFYTTIIDHLCKSGKVEMAHSIFCDMVE-QGISPDVISFNALINGFCKCSRVS 447
Query: 532 DACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGF 581
+A ++ P TY+ +I L+ ++ A + M D GF
Sbjct: 448 EAMHLYEE-MQNRGSYPDEVTYKLIIGGLIEEKKISIACMVWGQMMDKGF 496
Score = 41.2 bits (95), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 63/283 (22%), Positives = 113/283 (39%), Gaps = 19/283 (6%)
Query: 369 PSVNCCTFLLRKIVVSKQLDMRL--FSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGE 426
P + L + V ++D+ L F K+V+ R+ V +++ V K + +
Sbjct: 112 PDIWAFNIYLHLLFVEGRIDLALEVFEKIVKNGRKPDVVTYTIIIHGVCK----IKKFDT 167
Query: 427 CNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFM-DHMEASGSDVGDKMWVSLI 485
+ + M GF + I L K D A E + D M++ + ++ +LI
Sbjct: 168 AIQFWRDMIHKGFSPDNKACGAIVVGLCDGRKVDLAYELIIDVMKSGRVKLSTLVYNALI 227
Query: 486 KGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYD 545
G C AG +DK A + + + G ++ +N +C + DA K + R
Sbjct: 228 SGFCRAGRIDK-AQAIKSFMRRNGCEPDLVTYNVFLNYFCDELMLDDAKKLLKLMERS-G 285
Query: 546 LKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFV------DPFIKYVSKSGTSD 599
++P +Y +L+K + + D L LM + +P + + IK K G +
Sbjct: 286 IEPDVYSYNQLLKG-ICKGNCPDKAYL--LMTNKMWPKGLCDVVSYNTIIKAFCKIGDTT 342
Query: 600 DAIAFLKGMTSKRFPSMSVVLCLFA-AFFQARRHSEAQDLLSK 641
A + M K P V +F AF + A+ LL +
Sbjct: 343 SAYKLFEEMGQKGIPPDVVTFTIFIKAFLGKGSFNIAKKLLDQ 385
>gi|255660846|gb|ACU25592.1| pentatricopeptide repeat-containing protein [Tamonea boxiana]
Length = 418
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 45/164 (27%), Positives = 69/164 (42%), Gaps = 2/164 (1%)
Query: 422 GRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMW 481
G++ + K M F+ + + + L G +A + +D M G +
Sbjct: 255 GKVDSAMETYKQMLSQCFLPDLITYNTLIYGLCKKGDLKQAQDLLDEMRMKGLKPDKITY 314
Query: 482 VSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCV 541
+LI G+C GDLD A + + MV KE A L++ C + RA DA K + +
Sbjct: 315 TTLIDGNCKEGDLDSAFELRETMV-KESIRLDDVAYTALISGLCQEGRATDAEKMLREML 373
Query: 542 REYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFV 585
LKP + TY +I + K A LL M+ G P V
Sbjct: 374 -SVGLKPDNGTYTMIINEFCKKEDVKTAAKLLKEMQRQGHVPCV 416
Score = 46.6 bits (109), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 59/292 (20%), Positives = 110/292 (37%), Gaps = 5/292 (1%)
Query: 266 SNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLD 325
+ L++ VV + G + A +F E G + D ++ + + + +
Sbjct: 32 AKSLIQIVVSRKGKDSASA-VFAAILETKGTQRSDIYVFSGLINAYLESGFVRDAIECFR 90
Query: 326 EMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSK 385
R + +TC KVL + K Y+ + C S+ L+ + K
Sbjct: 91 LTREHKLRVPFDTCRKVLEHLMKLKYFKLVWGFYKEILECGYPASLYFFNILMHRFC--K 148
Query: 386 QLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNM 445
+ ++ + V + G + N+++ I +G + + K+ AM G
Sbjct: 149 EGEIWIAQSVFDSITKWGLRPSVVSFNTLMNGYIRLGDLDQGFKLKNAMHASGVQPDVYT 208
Query: 446 KSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMV 505
S + L K +EAN+ + M G + +LI GHC G +D A + +++M+
Sbjct: 209 YSVLINGLCKESKMNEANDLFNEMLDKGLVPNGVTFTTLIDGHCKNGKVDSAMETYKQML 268
Query: 506 EKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELI 557
+ + L+ C K A + +R LKP TY LI
Sbjct: 269 SQCFLPDL-ITYNTLIYGLCKKGDLKQAQDLLDE-MRMKGLKPDKITYTTLI 318
>gi|224107129|ref|XP_002314384.1| predicted protein [Populus trichocarpa]
gi|222863424|gb|EEF00555.1| predicted protein [Populus trichocarpa]
Length = 764
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 74/324 (22%), Positives = 137/324 (42%), Gaps = 13/324 (4%)
Query: 318 DRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFL 377
D ++L EM G+ TCV+++ + + EA DL + K +P+ + T L
Sbjct: 8 DYLEQILGEMSIAGFGPTNYTCVELVASCVKSRKLIEAFDLLQMMRHFKFRPAFSAYTTL 67
Query: 378 LRKIVVSKQLD--MRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAME 435
+ + + D + LF+++ +E G + +L ++++ GR+ +L M+
Sbjct: 68 IGALSEVGESDRMLALFNQM----QELGYEVNVHLLTTLIRVFSREGRVDAALSLLDEMK 123
Query: 436 EGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLD 495
F A + + GK D A +F M+A+G D + S++ C A LD
Sbjct: 124 SNTFDADIVLYNVCIDCFGKVGKVDMAWKFFHEMKANGLVPDDVTYTSMMGVLCKANRLD 183
Query: 496 KAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEE 555
+A + F++M E+ YA + ++ Y S + +A + R P Y
Sbjct: 184 EAVEIFEQM-EQNRQVPCAYAYNTMIMGYGSAGKFDEAYSLLER-QRAKGCIPSVVAY-N 240
Query: 556 LIKNLLVQRGFKD-ALSLLCLMKDHGFP--PFVDPFIKYVSKSGTSDDAIAFLKGMT-SK 611
I L ++G D AL + MK P P + I + K+G + A M +
Sbjct: 241 CILTCLGKKGKTDKALRIFEEMKRDAMPNLPTYNIIIGMLCKAGNVEAAFKVRDAMKEAG 300
Query: 612 RFPSMSVVLCLFAAFFQARRHSEA 635
FP++ + + +A++ EA
Sbjct: 301 LFPNVRTINIMIDRLCKAQKLDEA 324
Score = 55.8 bits (133), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 76/350 (21%), Positives = 135/350 (38%), Gaps = 15/350 (4%)
Query: 302 SSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEF 361
S+Y + L DR + ++M+ GYE+ + ++ FS V A+ L +
Sbjct: 62 SAYTTLIGALSEVGESDRMLALFNQMQELGYEVNVHLLTTLIRVFSREGRVDAALSLLDE 121
Query: 362 AMACKNKPSV---NCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKAL 418
+ + N C K+ ++DM K + NG V D S++ L
Sbjct: 122 MKSNTFDADIVLYNVCIDCFGKV---GKVDMAW--KFFHEMKANGLVPDDVTYTSMMGVL 176
Query: 419 ISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGD 478
R+ E +I + ME+ + + + + SAGK DEA ++ A G
Sbjct: 177 CKANRLDEAVEIFEQMEQNRQVPCAYAYNTMIMGYGSAGKFDEAYSLLERQRAKGCIPSV 236
Query: 479 KMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVH 538
+ ++ G DKA F++M + Y ++++ C K ++A V
Sbjct: 237 VAYNCILTCLGKKGKTDKALRIFEEMKRDAMPNLPTY--NIIIGMLC-KAGNVEAAFKVR 293
Query: 539 NCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPF---IKYVSKS 595
+ ++E L P T +I L + +A S+ M P F I + K
Sbjct: 294 DAMKEAGLFPNVRTINIMIDRLCKAQKLDEACSIFEGMDYKVCSPDGATFCSLIDGLGKQ 353
Query: 596 GTSDDAIAFLKGMT-SKRFPSMSVVLCLFAAFFQARRHSEAQDLLSKCPR 644
G DDA + M + + P++ V L FF+ R + + + R
Sbjct: 354 GRVDDAYRIYERMLDADQIPNVVVYTSLIRNFFKCDRKEDGHKMYKEMMR 403
Score = 52.4 bits (124), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 70/315 (22%), Positives = 130/315 (41%), Gaps = 12/315 (3%)
Query: 304 YNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAM 363
YN G+ +D WK EM++ G + T ++G + N + EAV+++E
Sbjct: 134 YNVCIDCFGKVGKVDMAWKFFHEMKANGLVPDDVTYTSMMGVLCKANRLDEAVEIFEQME 193
Query: 364 ACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGR 423
+ P ++ + + D +S + R R G + + N +L L G+
Sbjct: 194 QNRQVPCAYAYNTMIMGYGSAGKFD-EAYSLLERQ-RAKGCIPSVVAYNCILTCL---GK 248
Query: 424 MGECNKILKAMEEGGFIASSNMKSK--IAFRLSSAGKKDEANEFMDHMEASGSDVGDKMW 481
G+ +K L+ EE A N+ + I L AG + A + D M+ +G +
Sbjct: 249 KGKTDKALRIFEEMKRDAMPNLPTYNIIIGMLCKAGNVEAAFKVRDAMKEAGLFPNVRTI 308
Query: 482 VSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCV 541
+I C A LD+A F+ M + + S G L++ + R DA + ++ +
Sbjct: 309 NIMIDRLCKAQKLDEACSIFEGM-DYKVCSPDGATFCSLIDGLGKQGRVDDAYR-IYERM 366
Query: 542 REYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPP---FVDPFIKYVSKSGTS 598
+ D P Y LI+N +D + M G P ++ ++ V K+G +
Sbjct: 367 LDADQIPNVVVYTSLIRNFFKCDRKEDGHKMYKEMMRSGCSPDLMLLNTYMDCVFKAGET 426
Query: 599 DDAIAFLKGMTSKRF 613
+ A + + ++ F
Sbjct: 427 EKGRALFEEIKARGF 441
Score = 45.8 bits (107), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 45/206 (21%), Positives = 85/206 (41%), Gaps = 5/206 (2%)
Query: 399 FRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGK 458
++ G VL N+V+ G++ + ++L+ M+ G + + L+ +
Sbjct: 471 MKDQGCVLDTRAYNTVIDGFCKSGKVNKAYQLLEEMKTMGHHPTVVTYGSVVDGLAKIDR 530
Query: 459 KDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAID 518
DEA + +++G ++ ++ SLI G G +D+A ++M++K G + Y +
Sbjct: 531 LDEAYMLFEEAKSNGIELNQVIYSSLIDGFGKVGRVDEAYLVMEEMMQK-GLTPNVYTWN 589
Query: 519 LLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKD 578
L++ K I+ +++ P TY LI L R F A M+
Sbjct: 590 CLLDGLV-KAEEINEALVCFQSMKDLKCTPNQITYCILINGLCKVRKFNKAFVFWQEMQK 648
Query: 579 HGFPPFVDPFIKYVS---KSGTSDDA 601
G P + +S KSG A
Sbjct: 649 QGLKPNTITYTAMISGLAKSGNVAQA 674
>gi|255660790|gb|ACU25564.1| pentatricopeptide repeat-containing protein [Verbena hispida]
Length = 418
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 63/292 (21%), Positives = 112/292 (38%), Gaps = 5/292 (1%)
Query: 266 SNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLD 325
+ L++ VV + G A +F E G + D ++ + + + +
Sbjct: 32 AKTLIQIVVSRKGKGSASA-VFAAILETKGTQRSDIYVFSGLITAYLESGFLRDAIECYR 90
Query: 326 EMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSK 385
+ + + +TC KVL + K YE + C S+ L+ V K
Sbjct: 91 LTKEHKFRVPFDTCRKVLEHLMKLKYFKLVWGFYEENLECGYPASLYFFNILMHGFV--K 148
Query: 386 QLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNM 445
+ ++RL V + G + N+++ I +G + E ++ AM+ G
Sbjct: 149 EGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLNEGFRLKNAMQASGVQPDVYT 208
Query: 446 KSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMV 505
S + L K D+AN D M G + +LI GHC G +D A + +++M+
Sbjct: 209 YSVLINGLCKESKMDDANVLFDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQML 268
Query: 506 EKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELI 557
+ S + L+ C K A + + + LKP TY LI
Sbjct: 269 S-QSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMIMK-GLKPDKITYTTLI 318
Score = 49.7 bits (117), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 47/196 (23%), Positives = 80/196 (40%), Gaps = 13/196 (6%)
Query: 401 ENGNVLTDAMLN-----------SVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKI 449
++ NVL D ML+ +++ GR+ +I K M + +
Sbjct: 223 DDANVLFDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTL 282
Query: 450 AFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEG 509
+ L G +A + +D M G + +LI G+C GDL+ A + ++M+ KE
Sbjct: 283 IYGLCKKGDLKQAQDLIDEMIMKGLKPDKITYTTLIDGNCKEGDLETAFEYRKRMI-KEN 341
Query: 510 TSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDA 569
A L++ C + R++DA K + + LKP TY +I +
Sbjct: 342 IRLDDVAYTALISGLCQEGRSVDAEKMLREML-SVGLKPEIGTYTMIINEFCKKGDVWTG 400
Query: 570 LSLLCLMKDHGFPPFV 585
LL M+ G+ P V
Sbjct: 401 SKLLKEMQRDGYKPSV 416
>gi|115448805|ref|NP_001048182.1| Os02g0759500 [Oryza sativa Japonica Group]
gi|46805701|dbj|BAD17102.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|47497356|dbj|BAD19395.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|113537713|dbj|BAF10096.1| Os02g0759500 [Oryza sativa Japonica Group]
gi|125583759|gb|EAZ24690.1| hypothetical protein OsJ_08460 [Oryza sativa Japonica Group]
gi|215704115|dbj|BAG92955.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215766866|dbj|BAG99094.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 555
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 94/460 (20%), Positives = 178/460 (38%), Gaps = 57/460 (12%)
Query: 224 IFATGSIDNSIEKVASRICKVVRSDIWG--DDVERQLRDLNVTFSNDLVKFVVDKLGDEP 281
+ T D ++ RI V G + E L L + LV V+ +L +
Sbjct: 67 VLPTNLQDERFAALSDRIYDAVIETAAGSSEGTEAALDALGAELTTPLVADVLHRLRYDE 126
Query: 282 KKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDR----FWKVLDEM-RSKGYEMEM 336
K A FF WA +H+ ++YN + +L R VLD M R + + +
Sbjct: 127 KLAFRFFVWASHQDGYEHEAATYNDVIDILSGTRYKARQFGVLCDVLDHMKRRRTRSVPV 186
Query: 337 ETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVV 396
+ + +L ++E+++ LRK+ +++ MR +
Sbjct: 187 DDLLGILRAYTEKHLTH------------------------LRKLAKKRRVRMRTPPE-- 220
Query: 397 RVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSA 456
TDA LN +L A G + E + ++ + ++ S + F A
Sbjct: 221 ----------TDA-LNVLLDAFCKCGMVREAEVVFSRVKR-KLLGNAETYSILFFGWCRA 268
Query: 457 GKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGT--SHAG 514
A + ++ M + + + I C AG + +A D F+ M + T S
Sbjct: 269 RDPKRAMKVLEEMIQMKHTPENFTYNAAIDSFCSAGLVSEARDLFEFMRTEGSTISSPTA 328
Query: 515 YAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLC 574
+++ +K ++ C + + +R+ P +TY++LI+ +L+ A +L
Sbjct: 329 KTYSIMIAAL-AKAGQMEECFELISEMRKCGCMPDVSTYKDLIEGMLLVDKLDAAYCVLD 387
Query: 575 LMKDHGFPPFV---DPFIKYVSKSGTSDDAIAFLKGMTSKRF-PSMSVVLCLFAAFFQAR 630
M GFPP + + F+K + +DDA+ + M PS+ L FF+ R
Sbjct: 388 EMAKAGFPPDIVTYNCFLKVLCGLQKADDALELCERMIEAHCEPSVHTYNMLMVMFFEMR 447
Query: 631 RHSEAQDLLSK-----CPRYVRNHADVLNLLYSKKSGGDS 665
A ++ + C R V + +++ L+ D+
Sbjct: 448 EPDRAINIWIEMDKRGCHRAVDTYETMIDGLFDSGRTEDA 487
>gi|115482730|ref|NP_001064958.1| Os10g0497300 [Oryza sativa Japonica Group]
gi|41152691|dbj|BAD08215.1| hypothetical protein [Oryza sativa Japonica Group]
gi|113639567|dbj|BAF26872.1| Os10g0497300 [Oryza sativa Japonica Group]
gi|215693996|dbj|BAG89195.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 794
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 94/431 (21%), Positives = 172/431 (39%), Gaps = 25/431 (5%)
Query: 166 TYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRNKMT--EKFEKEGLESDLEKLKG 223
+YN++L+ + QE L+ +M G V + T F KEG DL+K G
Sbjct: 164 SYNILLKGLCDENRSQEALELLQMMPDDGGDCPPDVVSYTTVINGFFKEG---DLDKAYG 220
Query: 224 IFAT----GSIDNSI--EKVASRICKVVRSDIWGDDVERQLRD---LNVTFSNDLVKFVV 274
+ G + N + + + +CK D + + +++ N N +V
Sbjct: 221 TYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYC 280
Query: 275 DKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEM 334
+PK+A+ F + G V+ D +YN++ L + K+ D M +G +
Sbjct: 281 SS--GQPKEAIGFLKKMHSDG-VEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKP 337
Query: 335 EMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLD--MRLF 392
E+ T +L ++ + + E L + + P+ + L+ ++D M +F
Sbjct: 338 EITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVF 397
Query: 393 SKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFR 452
SK+ R+ G +V+ L GR+ + + + M + + + + +
Sbjct: 398 SKM----RQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHS 453
Query: 453 LSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSH 512
L K D+A E + M G + + S+I HC G + ++ F MV + G
Sbjct: 454 LCIFDKWDKAKELILEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMV-RIGVKP 512
Query: 513 AGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSL 572
L++ YC + +A K + + V +KP TY LI +DAL L
Sbjct: 513 DIITYSTLIDGYCLAGKMDEATKLLASMV-SVGMKPDCVTYNTLINGYCKISRMEDALVL 571
Query: 573 LCLMKDHGFPP 583
M+ G P
Sbjct: 572 FREMESSGVSP 582
Score = 47.4 bits (111), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 75/349 (21%), Positives = 140/349 (40%), Gaps = 17/349 (4%)
Query: 241 ICKVVRSDIWGDDVERQLRDL----NVTFSNDLVKFVVDKLGDEPKKALIFFRW-AEESG 295
+C R+ D V R++ L NV N L+K + D+ + ++AL + ++ G
Sbjct: 136 LCADKRTSDAMDIVLRRMTQLGCIPNVFSYNILLKGLCDE--NRSQEALELLQMMPDDGG 193
Query: 296 FVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEA 355
D SY + + +E +D+ + EM +G + T ++ + + +A
Sbjct: 194 DCPPDVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKA 253
Query: 356 VDLYEFAMACKNKPSVNCCTF--LLRKIVVSKQLDMRL-FSKVVRVFRENGNVLTDAMLN 412
+++ KN NC T+ ++ S Q + F K + +V+T N
Sbjct: 254 MEV--LTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVT---YN 308
Query: 413 SVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEAS 472
S++ L GR E K+ +M + G + ++ G E + +D M +
Sbjct: 309 SLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRN 368
Query: 473 GSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAID 532
G ++ LI + G +D+A F KM ++G + ++ C R D
Sbjct: 369 GIHPNHYVFSILICAYAKQGKVDQAMLVFSKM-RQQGLNPDTVTYGTVIGILCKSGRVED 427
Query: 533 ACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGF 581
A ++ + E L P + Y LI +L + + A L+ M D G
Sbjct: 428 AMRYFEQMIDE-RLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGI 475
Score = 40.0 bits (92), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 68/163 (41%), Gaps = 7/163 (4%)
Query: 484 LIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVRE 543
LI C AG LD +++K G A L+ C+ R DA V + +
Sbjct: 97 LIGSCCCAGRLDLGFAALGNVIKK-GFRVDAIAFTPLLKGLCADKRTSDAMDIVLRRMTQ 155
Query: 544 YDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHG--FPPFVDPFIKYVS---KSGTS 598
P +Y L+K L + ++AL LL +M D G PP V + ++ K G
Sbjct: 156 LGCIPNVFSYNILLKGLCDENRSQEALELLQMMPDDGGDCPPDVVSYTTVINGFFKEGDL 215
Query: 599 DDAIAFLKGMTSKR-FPSMSVVLCLFAAFFQARRHSEAQDLLS 640
D A M + P++ + AA +A+ +A ++L+
Sbjct: 216 DKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLT 258
>gi|357499959|ref|XP_003620268.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355495283|gb|AES76486.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 652
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 70/342 (20%), Positives = 132/342 (38%), Gaps = 17/342 (4%)
Query: 326 EMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSK 385
+M +G + + C ++ F + ++ A ++ + P T L++ + +
Sbjct: 110 KMEFRGIKPNLVNCNILINCFCQLGLIPFAFSVFAKILKMGYVPDTITFTTLIKGLCLKG 169
Query: 386 QLDMRLF--SKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASS 443
Q+ KVV + G +++ L VG +L+ ++ +
Sbjct: 170 QIQQAFLFHDKVVAL----GFHFDQISYGTLIHGLCKVGETRAALDLLQRVDGNLVQPNV 225
Query: 444 NMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQK 503
M + I + +EA + M + G + +LI G C+ G L+ A D F K
Sbjct: 226 VMYNTIIDSMCKVKLVNEAFDLFSEMISKGISPDVVTYSALISGFCILGKLNDAIDLFNK 285
Query: 504 MVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQ 563
M+ E Y ++LVN +C K+ + K V + + + +KP TY L+ +
Sbjct: 286 MI-LENIKPDVYTFNILVNAFC-KDGKMKEGKTVFDMMMKQGIKPNFVTYNSLMDGYCLV 343
Query: 564 RGFKDALSLLCLMKDHGFPPFVDPF---IKYVSKSGTSDDAIAFLKGMTSKR-FPSMSVV 619
+ A S+ M G P + + I K D+A+ K M K P +
Sbjct: 344 KEVNKAKSIFNTMAQGGVNPDIQSYSIMINGFCKIKKFDEAMNLFKEMHRKNIIPDVVTY 403
Query: 620 LCLFAAFFQARRHSEAQDLLSK-----CPRYVRNHADVLNLL 656
L ++ R S A L+ + P +R + +L+ L
Sbjct: 404 SSLIDGLSKSGRISYALQLVDQMHDRGVPPTIRTYNSILDAL 445
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 64/325 (19%), Positives = 120/325 (36%), Gaps = 37/325 (11%)
Query: 293 ESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMV 352
+ V+ + YN + + + ++ + + EM SKG ++ T ++ F +
Sbjct: 217 DGNLVQPNVVMYNTIIDSMCKVKLVNEAFDLFSEMISKGISPDVVTYSALISGFCILGKL 276
Query: 353 KEAVDLYEFAMACKNKPSVNCCTFLLRK--------------------------IVVSKQ 386
+A+DL+ + KP V L+ + +
Sbjct: 277 NDAIDLFNKMILENIKPDVYTFNILVNAFCKDGKMKEGKTVFDMMMKQGIKPNFVTYNSL 336
Query: 387 LDMRLFSKVVRVFRENGNVLTDAMLNS-------VLKALISVGRMGECNKILKAMEEGGF 439
+D K V + N + +N ++ + + E + K M
Sbjct: 337 MDGYCLVKEVNKAKSIFNTMAQGGVNPDIQSYSIMINGFCKIKKFDEAMNLFKEMHRKNI 396
Query: 440 IASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAAD 499
I S + LS +G+ A + +D M G + + S++ C +DKA
Sbjct: 397 IPDVVTYSSLIDGLSKSGRISYALQLVDQMHDRGVPPTIRTYNSILDALCKIHQVDKAIA 456
Query: 500 CFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACK-FVHNCVREYDLKPWHTTYEELIK 558
K+ +K G Y +L+ C + DA K F V+ ++L TY +I+
Sbjct: 457 LLTKLKDK-GIQPNMYTYSILIKGLCQSGKLEDARKVFEGLLVKGHNLNV--DTYTIMIQ 513
Query: 559 NLLVQRGFKDALSLLCLMKDHGFPP 583
V+ F +AL+LL M+D+G P
Sbjct: 514 GFCVEGLFNEALALLSKMEDNGCIP 538
>gi|224092332|ref|XP_002309562.1| predicted protein [Populus trichocarpa]
gi|222855538|gb|EEE93085.1| predicted protein [Populus trichocarpa]
Length = 590
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 74/160 (46%), Gaps = 5/160 (3%)
Query: 453 LSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSH 512
L GK +A EF D EASG + ++I G C G+ AA F+KM E+ G
Sbjct: 175 LCKVGKFAQAVEFFDDFEASGCQPTVYTYTTIINGLCKIGETTAAAGLFKKM-EEAGCQP 233
Query: 513 AGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSL 572
++L+++ C K++ ++ + + ++ + P TY LI+ L R +K+A +L
Sbjct: 234 NVVTYNILIDSLC-KDKLVNEALDIFSYMKAKRISPDIFTYNSLIQGLCNFRRWKEASAL 292
Query: 573 LCLMKDHGFPPFVDPF---IKYVSKSGTSDDAIAFLKGMT 609
L M P + F + + K G +A K MT
Sbjct: 293 LNEMTSLNIMPNIFTFNVLVDAICKEGKVSEAQGVFKTMT 332
Score = 46.6 bits (109), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 110/522 (21%), Positives = 195/522 (37%), Gaps = 73/522 (13%)
Query: 166 TYNLMLRIVGVHGLVQEFWGLVDVMKKKG--YGVASHVRNKMTEKFEKEGLESDLEKLKG 223
++N ML + ++Q F L+ + K G YG + +M E GL D+ L
Sbjct: 81 SFNHMLHREPLPCIIQ-FTKLLSAIVKMGQYYGAVISLSKQM----ELAGLSPDIYTLSI 135
Query: 224 IFATGSIDNSIEKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKK 283
+ S ++ S K+++ + D V T N L K V K +
Sbjct: 136 LIDCFSHLQRVDLAFSVFSKMIKLGLQPDAVTFN------TLINGLCK--VGKFA----Q 183
Query: 284 ALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVL 343
A+ FF E SG + +Y + + L + + +M G + + T ++
Sbjct: 184 AVEFFDDFEASG-CQPTVYTYTTIINGLCKIGETTAAAGLFKKMEEAGCQPNVVTYNILI 242
Query: 344 GRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRE-- 401
+ +V EA+D++ + A + P + L++ + + R + + + E
Sbjct: 243 DSLCKDKLVNEALDIFSYMKAKRISPDIFTYNSLIQGLC-----NFRRWKEASALLNEMT 297
Query: 402 NGNVLTDAM-LNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKD 460
+ N++ + N ++ A+ G++ E + K M E G S + + S +
Sbjct: 298 SLNIMPNIFTFNVLVDAICKEGKVSEAQGVFKTMTEMGVEPDVVTYSSLMYGYSLRMEIV 357
Query: 461 EANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLL 520
EA + D M G + LIKG+C A +D+A F +M+ +G + + L
Sbjct: 358 EARKLFDAMITKGCKPDAFSYNILIKGYCKAKRIDEAKQLFNEMIH-QGLTPDNVNYNTL 416
Query: 521 VNTYCSKNR---AIDACKFVHN-----------------CVREY--------------DL 546
++ C R A D K +H+ C Y L
Sbjct: 417 IHGLCQLGRLREAQDLFKNMHSNGNLPDLFTYSMLLDGFCKEGYLGKAFRLFRVMQSTYL 476
Query: 547 KPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPF---IKYVSKSGTSDDAIA 603
KP Y LI + KDA L + G P V + I + K G D+A+
Sbjct: 477 KPDIAMYNILIDAMCKFGNLKDARKLFSELFVQGLLPNVQIYTTIINNLCKEGLLDEALE 536
Query: 604 FLKGMTSKRFP----SMSVVLCLFAAFFQARRHSEAQDLLSK 641
+ M P S +V++ F Q + S A L+ +
Sbjct: 537 AFRNMEGDGCPPDEFSYNVII---RGFLQYKDESRAAQLIGE 575
Score = 45.1 bits (105), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 49/220 (22%), Positives = 91/220 (41%), Gaps = 8/220 (3%)
Query: 298 KHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVD 357
K D SYN + + ID ++ +EM +G + ++ + ++EA D
Sbjct: 372 KPDAFSYNILIKGYCKAKRIDEAKQLFNEMIHQGLTPDNVNYNTLIHGLCQLGRLREAQD 431
Query: 358 LYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFR--ENGNVLTD-AMLNSV 414
L++ + N P + + LL L K R+FR ++ + D AM N +
Sbjct: 432 LFKNMHSNGNLPDLFTYSMLLDGFCKEGYL-----GKAFRLFRVMQSTYLKPDIAMYNIL 486
Query: 415 LKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGS 474
+ A+ G + + K+ + G + + + + I L G DEA E +ME G
Sbjct: 487 IDAMCKFGNLKDARKLFSELFVQGLLPNVQIYTTIINNLCKEGLLDEALEAFRNMEGDGC 546
Query: 475 DVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAG 514
+ + +I+G D +AA +M ++ + AG
Sbjct: 547 PPDEFSYNVIIRGFLQYKDESRAAQLIGEMRDRGFVAEAG 586
>gi|125548275|gb|EAY94097.1| hypothetical protein OsI_15870 [Oryza sativa Indica Group]
Length = 554
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 69/298 (23%), Positives = 120/298 (40%), Gaps = 11/298 (3%)
Query: 300 DESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLY 359
DE S+ A+ V RE ++ +L M G+ ++ TC V+ E+ K+ + +
Sbjct: 172 DERSFRALVVVCCREGKVEEVDALLAAMWRYGFSLDNATCTVVVRSLCEKGRFKDVSEFF 231
Query: 360 EFAMACKNKPS-VNCCTFL--LRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLK 416
+ P+ VN ++ L K KQ L V R + NV T L +
Sbjct: 232 RRMLEMGTPPNVVNYTAWIDGLCKRRYVKQAFHVLEEMVGRGLKP--NVYTHTTL---ID 286
Query: 417 ALISVGRMGECNKI-LKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSD 475
L +G ++ LK ++ + + + + + GK A + M G
Sbjct: 287 GLCKIGWTERAFRLFLKLIKSSSYKPNVHTYTVMIGGYCREGKLARAEMLLVRMVEQGLK 346
Query: 476 VGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACK 535
+ +LI GHC G D+A + KM ++EG Y + +++ +C K + +A K
Sbjct: 347 PNTNTYTTLIGGHCKGGSFDRAFELMNKM-KQEGFLPNIYTYNAVIDGFCKKGKIQEAYK 405
Query: 536 FVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPFIKYVS 593
+ + LK TY LI Q AL L M ++G P ++ + +S
Sbjct: 406 VLRMATSQ-GLKFDKITYTILITEHCKQGHITYALDLFDRMVENGCCPDIEAYTSLIS 462
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 61/275 (22%), Positives = 112/275 (40%), Gaps = 12/275 (4%)
Query: 287 FFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRF 346
FFR E G + +Y A L + + + + VL+EM +G + + T ++
Sbjct: 230 FFRRMLEMG-TPPNVVNYTAWIDGLCKRRYVKQAFHVLEEMVGRGLKPNVYTHTTLIDGL 288
Query: 347 SERNMVKEAVDLY-EFAMACKNKPSVNCCTFLLRKIVVSKQL---DMRLFSKVVRVFREN 402
+ + A L+ + + KP+V+ T ++ +L +M L V + + N
Sbjct: 289 CKIGWTERAFRLFLKLIKSSSYKPNVHTYTVMIGGYCREGKLARAEMLLVRMVEQGLKPN 348
Query: 403 GNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEA 462
N T +++ G +++ M++ GF+ + + + GK EA
Sbjct: 349 TNTYT-----TLIGGHCKGGSFDRAFELMNKMKQEGFLPNIYTYNAVIDGFCKKGKIQEA 403
Query: 463 NEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVN 522
+ + + G + LI HC G + A D F +MVE G A L++
Sbjct: 404 YKVLRMATSQGLKFDKITYTILITEHCKQGHITYALDLFDRMVE-NGCCPDIEAYTSLIS 462
Query: 523 TYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELI 557
TYC + + ++ KF C+ L P TY +I
Sbjct: 463 TYCQQRQMEESQKFFDKCLM-IGLLPTKQTYTSMI 496
>gi|115477950|ref|NP_001062570.1| Os09g0110200 [Oryza sativa Japonica Group]
gi|46806362|dbj|BAD17538.1| PPR protein-like protein [Oryza sativa Japonica Group]
gi|46806431|dbj|BAD17588.1| PPR protein-like protein [Oryza sativa Japonica Group]
gi|113630803|dbj|BAF24484.1| Os09g0110200 [Oryza sativa Japonica Group]
Length = 794
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 78/357 (21%), Positives = 145/357 (40%), Gaps = 23/357 (6%)
Query: 300 DESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEME--TCVKVLGRFSERNMVKEAVD 357
DE +YNA S L + ++ ++ L ++ G+ + ++ +C+ + G F R E
Sbjct: 276 DEVTYNAFLSGLCKVGRVNEAFQRLVMLQDGGFALGLKGYSCL-IDGLFQARRF-DEGFG 333
Query: 358 LYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKA 417
Y+ + P V T ++R + +++ L + V ++ G V N+VLK
Sbjct: 334 YYKTMLERNISPDVVLYTIMIRGCAEAGRIEDAL--SFLDVMKKKGFVPDTFCYNTVLKV 391
Query: 418 LISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVG 477
L G + + + M + + S ++ + L G DEA + D M G D
Sbjct: 392 LCDHGDLERAHTLRSEMLQNNLVLDSTTQTIMICGLCKRGLVDEAMQIFDEMGEHGCDPT 451
Query: 478 DKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTS-------HAGYAIDL-----LVNTYC 525
+ +LI G G L++A F KM S A D LV+ C
Sbjct: 452 VMTYNALIDGFYREGRLEEARMLFHKMEMGNNPSLFLRLTLGANQVCDSESLRKLVHDMC 511
Query: 526 SKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPP-- 583
+ + A K + + + + + P TY LI L R A+ L ++ G P
Sbjct: 512 QSGQVLKAYKLLRSII-DSGVVPDVVTYNTLINGLCKARNLDGAVRLFKELQLKGISPDE 570
Query: 584 -FVDPFIKYVSKSGTSDDAIAFLKG-MTSKRFPSMSVVLCLFAAFFQARRHSEAQDL 638
I + ++ +DA+ + + S PS+S+ + + + ++ S+A +L
Sbjct: 571 ITYGTLIDGLLRAHRENDAMMLFQNILQSGSSPSLSIYNSMMRSLCRMKKLSQAINL 627
Score = 49.7 bits (117), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 60/272 (22%), Positives = 113/272 (41%), Gaps = 20/272 (7%)
Query: 320 FWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLR 379
+ L + R+ G ++ S +AV + +++P+ +L+
Sbjct: 121 MFDALADARAAGLPASSSAFAALVAAHSSAGRHADAVQAFSRMDEFQSRPTAFVYNTILK 180
Query: 380 KIVVSK--QLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEG 437
+V S L + L++++V G A N ++ L G G+ K+ M +
Sbjct: 181 ALVDSGVILLALALYNRMVAA----GCAPNRATYNVLMDGLCKQGMAGDALKMFDEMLDR 236
Query: 438 GFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKA 497
G + + + + + L +AGK DEA + + M+ G + + + + G C G +++A
Sbjct: 237 GIMPNVKIYTVLLSSLCNAGKIDEAVQLLGSMKDKGCLPDEVTYNAFLSGLCKVGRVNEA 296
Query: 498 ADCFQKMVEKEGTSHA----GYA--IDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHT 551
FQ++V + A GY+ ID L + R D + + E ++ P
Sbjct: 297 ---FQRLVMLQDGGFALGLKGYSCLIDGLF-----QARRFDEGFGYYKTMLERNISPDVV 348
Query: 552 TYEELIKNLLVQRGFKDALSLLCLMKDHGFPP 583
Y +I+ +DALS L +MK GF P
Sbjct: 349 LYTIMIRGCAEAGRIEDALSFLDVMKKKGFVP 380
>gi|356520989|ref|XP_003529141.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g09060-like [Glycine max]
Length = 682
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 83/351 (23%), Positives = 135/351 (38%), Gaps = 44/351 (12%)
Query: 298 KHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVD 357
K D +Y+A+ L + KV +EM +G ++ TC +L + V+E +
Sbjct: 286 KCDLFTYSALIHGLSEAGDLGGARKVYEEMVGRGVRPDVVTCNAMLNGLCKAGNVEECFE 345
Query: 358 LYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNV-----LTDAML- 411
L+E C LR + R ++ ++ ENG V L D +L
Sbjct: 346 LWEEMGKCS-----------LRNV--------RSYNIFLKGLFENGKVDDAMMLWDGLLE 386
Query: 412 -NSVLKALISVGRM--GECNKILKAME-----EGGFIASSNMKSKIAFRLSSAGKKDEAN 463
+S ++ G G N+ L+ +E EGG S + L G+ DEA+
Sbjct: 387 ADSATYGVVVHGLCWNGYVNRALQVLEEAEHREGGMDVDEFAYSSLINALCKEGRLDEAD 446
Query: 464 EFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNT 523
++ M G + LI G LD A F++M K G S + ++L+N
Sbjct: 447 GVVELMNKRGCKFNSHVCNVLIDGFVKHSKLDSAVKVFREMSGK-GCSLTVVSYNILING 505
Query: 524 YCSKNRAIDACKFVHNCVREYDLKPWH---TTYEELIKNLLVQRGFKDALSLLCLMKDHG 580
R +A ++CV E K W TY LI L AL L D G
Sbjct: 506 LLRAERFREA----YDCVNEMLEKGWKPDIITYSTLIGGLYESNMMDAALRLWHQFLDTG 561
Query: 581 FPPFV---DPFIKYVSKSGTSDDAIAFLKGMTSKRFPSMSVVLCLFAAFFQ 628
P + + I + SG +DA+ + K+ ++ + F++
Sbjct: 562 HKPDIIMYNIVIHRLCSSGKVEDALQLYSTLRQKKCVNLVTHNTIMEGFYK 612
Score = 38.9 bits (89), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 39/170 (22%), Positives = 83/170 (48%), Gaps = 13/170 (7%)
Query: 303 SYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFA 362
SYN + + L R + + ++EM KG++ ++ T ++G E NM+ A+ L+
Sbjct: 498 SYNILINGLLRAERFREAYDCVNEMLEKGWKPDIITYSTLIGGLYESNMMDAALRLWHQF 557
Query: 363 MACKNKPSVNCCTFLLRKIVVSKQLD--MRLFSKVVRVFRENGNVLTDAMLNSVLKALIS 420
+ +KP + ++ ++ S +++ ++L+S + + ++ N++T N++++
Sbjct: 558 LDTGHKPDIIMYNIVIHRLCSSGKVEDALQLYSTLRQ--KKCVNLVTH---NTIMEGFYK 612
Query: 421 VGRMGECNKILKAMEEGGF---IASSNMKSKIAFRLSSAGKKDEANEFMD 467
VG +KI + E I S N+ K L S G+ +A F+D
Sbjct: 613 VGNCEMASKIWAHILEDELQPDIISYNITLK---GLCSCGRVTDAVGFLD 659
>gi|125604707|gb|EAZ43743.1| hypothetical protein OsJ_28367 [Oryza sativa Japonica Group]
Length = 812
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 78/357 (21%), Positives = 145/357 (40%), Gaps = 23/357 (6%)
Query: 300 DESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEME--TCVKVLGRFSERNMVKEAVD 357
DE +YNA S L + ++ ++ L ++ G+ + ++ +C+ + G F R E
Sbjct: 276 DEVTYNAFLSGLCKVGRVNEAFQRLVMLQDGGFALGLKGYSCL-IDGLFQARRF-DEGFG 333
Query: 358 LYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKA 417
Y+ + P V T ++R + +++ L + V ++ G V N+VLK
Sbjct: 334 YYKTMLERNISPDVVLYTIMIRGCAEAGRIEDAL--SFLDVMKKKGFVPDTFCYNTVLKV 391
Query: 418 LISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVG 477
L G + + + M + + S ++ + L G DEA + D M G D
Sbjct: 392 LCDHGDLERAHTLRSEMLQNNLVLDSTTQTIMICGLCKRGLVDEAMQIFDEMGEHGCDPT 451
Query: 478 DKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTS-------HAGYAIDL-----LVNTYC 525
+ +LI G G L++A F KM S A D LV+ C
Sbjct: 452 VMTYNALIDGFYREGRLEEARMLFHKMEMGNNPSLFLRLTLGANQVCDSESLRKLVHDMC 511
Query: 526 SKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPP-- 583
+ + A K + + + + + P TY LI L R A+ L ++ G P
Sbjct: 512 QSGQVLKAYKLLRSII-DSGVVPDVVTYNTLINGLCKARNLDGAVRLFKELQLKGISPDE 570
Query: 584 -FVDPFIKYVSKSGTSDDAIAFLKG-MTSKRFPSMSVVLCLFAAFFQARRHSEAQDL 638
I + ++ +DA+ + + S PS+S+ + + + ++ S+A +L
Sbjct: 571 ITYGTLIDGLLRAHRENDAMMLFQNILQSGSSPSLSIYNSMMRSLCRMKKLSQAINL 627
Score = 49.7 bits (117), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 60/272 (22%), Positives = 113/272 (41%), Gaps = 20/272 (7%)
Query: 320 FWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLR 379
+ L + R+ G ++ S +AV + +++P+ +L+
Sbjct: 121 MFDALADARAAGLPASSSAFAALVAAHSSAGRNADAVQAFSRMDEFQSRPTAFVYNTILK 180
Query: 380 KIVVSK--QLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEG 437
+V S L + L++++V G A N ++ L G G+ K+ M +
Sbjct: 181 ALVDSGVILLALALYNRMVAA----GCAPNRATYNVLMDGLCKQGMAGDALKMFDEMLDR 236
Query: 438 GFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKA 497
G + + + + + L +AGK DEA + + M+ G + + + + G C G +++A
Sbjct: 237 GIMPNVKIYTVLLSSLCNAGKIDEAVQLLGSMKDKGCLPDEVTYNAFLSGLCKVGRVNEA 296
Query: 498 ADCFQKMVEKEGTSHA----GYA--IDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHT 551
FQ++V + A GY+ ID L + R D + + E ++ P
Sbjct: 297 ---FQRLVMLQDGGFALGLKGYSCLIDGLF-----QARRFDEGFGYYKTMLERNISPDVV 348
Query: 552 TYEELIKNLLVQRGFKDALSLLCLMKDHGFPP 583
Y +I+ +DALS L +MK GF P
Sbjct: 349 LYTIMIRGCAEAGRIEDALSFLDVMKKKGFVP 380
>gi|15221081|ref|NP_172636.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75200496|sp|Q9SAA6.1|PPR34_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g11710, mitochondrial; Flags: Precursor
gi|4835786|gb|AAD30252.1|AC007296_13 F25C20.14 [Arabidopsis thaliana]
gi|22655109|gb|AAM98145.1| putative salt-inducible protein [Arabidopsis thaliana]
gi|30725498|gb|AAP37771.1| At1g11710 [Arabidopsis thaliana]
gi|332190652|gb|AEE28773.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 657
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 80/335 (23%), Positives = 135/335 (40%), Gaps = 41/335 (12%)
Query: 295 GFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKE 354
GF + N M +L + IDRFWKV EM S GY + T V+ F + + + E
Sbjct: 178 GFCVSVHALNNFMGCLLNVNE-IDRFWKVYKEMDSLGYVENVNTFNLVIYSFCKESKLFE 236
Query: 355 AVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVV-RVFRENGNVLTDAML-- 411
A+ ++ + C P N +F + K DMR +++ ++ +GN ++ +
Sbjct: 237 ALSVFYRMLKCGVWP--NVVSFNMMIDGACKTGDMRFALQLLGKMGMMSGNFVSPNAVTY 294
Query: 412 NSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEA 471
NSV+ GR+ +I M + G + + AG DEA D M +
Sbjct: 295 NSVINGFCKAGRLDLAERIRGDMVKSGVDCNERTYGALVDAYGRAGSSDEALRLCDEMTS 354
Query: 472 SGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEK----EGTSHAGYAIDLLVNTYCSK 527
G V ++ S++ + GD++ A + M K + + A L N Y +
Sbjct: 355 KGLVVNTVIYNSIVYWLFMEGDIEGAMSVLRDMNSKNMQIDRFTQAIVVRGLCRNGYVKE 414
Query: 528 ----NRAIDACKFV----------HNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLL 573
R I K V H+ VR+ L ++++ ++LVQ DA+S
Sbjct: 415 AVEFQRQISEKKLVEDIVCHNTLMHHFVRDKKL----ACADQILGSMLVQGLSLDAIS-- 468
Query: 574 CLMKDHGFPPFVDPFIKYVSKSGTSDDAIAFLKGM 608
F +D ++ K G + A+ GM
Sbjct: 469 -------FGTLIDGYL----KEGKLERALEIYDGM 492
Score = 43.9 bits (102), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 82/383 (21%), Positives = 145/383 (37%), Gaps = 55/383 (14%)
Query: 239 SRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVK 298
S +C +R W L + + +N L+ V+ + PK AL F+ W S V
Sbjct: 34 SALCLNLRQRRWN-----TLHQFSSSLTNPLISRVLREFRSSPKLALEFYNWVLRSNTVA 88
Query: 299 HDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDL 358
E+ + A ++ RF L M + +E E + S +++ +
Sbjct: 89 KSENRFEASCVMIHLLVGSRRFDDALSIM-ANLMSVEGE-------KLSPLHVLSGLIRS 140
Query: 359 YEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKAL 418
Y+ AC + P V L+R ++ D + +V+ R G ++ LN+ + L
Sbjct: 141 YQ---ACGSSPDV--FDSLVR--ACTQNGDAQGAYEVIEQTRAEGFCVSVHALNNFMGCL 193
Query: 419 ISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGD 478
++V + K+ K M+ G++ + N + + + K EA M G
Sbjct: 194 LNVNEIDRFWKVYKEMDSLGYVENVNTFNLVIYSFCKESKLFEALSVFYRMLKCGVWPNV 253
Query: 479 KMWVSLIKGHCVAGDLDKAADCFQKMVEKEG--TSHAGYAIDLLVNTYCSKNRAIDACKF 536
+ +I G C GD+ A KM G S + ++N +C R
Sbjct: 254 VSFNMMIDGACKTGDMRFALQLLGKMGMMSGNFVSPNAVTYNSVINGFCKAGR------- 306
Query: 537 VHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPFIKYVSKSG 596
DL E I+ +V+ G C + +G VD + ++G
Sbjct: 307 -------LDLA-------ERIRGDMVKSGVD------CNERTYG--ALVDAY----GRAG 340
Query: 597 TSDDAIAFLKGMTSKRFPSMSVV 619
+SD+A+ MTSK +V+
Sbjct: 341 SSDEALRLCDEMTSKGLVVNTVI 363
>gi|224081867|ref|XP_002306508.1| predicted protein [Populus trichocarpa]
gi|222855957|gb|EEE93504.1| predicted protein [Populus trichocarpa]
Length = 439
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 68/324 (20%), Positives = 128/324 (39%), Gaps = 22/324 (6%)
Query: 282 KKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVK 341
K+AL FF W E +H +YN M +LG+ D W ++ MR+ + T +
Sbjct: 61 KRALDFFNWVETESQFQHTTETYNRMIDILGKFFEFDLSWDLIQRMRNNPFSTPNHTTFR 120
Query: 342 VL-GRFSERNMVKEAVDLY-----EFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKV 395
VL R+ ++V EAV +Y EF + K + C + ++
Sbjct: 121 VLFHRYISAHLVNEAVSVYEDRLKEFGL----KDETSYCILVDALCEYKHVIEAHELCFG 176
Query: 396 VRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSS 455
N +T + N +L+ +G G+C + + M+ + S L
Sbjct: 177 NNNNSINVRNIT-KIYNMILRGWFKMGWWGKCREFWEEMDRKEVCKDLHSYSIYMDILCK 235
Query: 456 AGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGY 515
+GK +A + M++ G + + ++I ++ +D +++M E G
Sbjct: 236 SGKPWKAVKLYKEMKSKGIKLDVVAYNTVINAIGLSEGVDFVLRVYREMREL-GCQPNVV 294
Query: 516 AIDLLVNTYCSKNRAIDACKFVHNCVREY---DLKPWHTTYEELIKNLLVQRGFKDALSL 572
+ ++ C R +A K + + Y D+ +H + L K K+ L L
Sbjct: 295 TCNTVIKLLCENGRIKEAYKMLDEMPQSYIAPDVFTYHCFFRCLEKP-------KEILCL 347
Query: 573 LCLMKDHGFPPFVDPFIKYVSKSG 596
M ++G P +D ++ + K G
Sbjct: 348 FDQMIENGVCPRMDTYVMLMRKFG 371
>gi|255660848|gb|ACU25593.1| pentatricopeptide repeat-containing protein [Citharexylum
ligustrinum]
Length = 418
Score = 56.6 bits (135), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 54/219 (24%), Positives = 91/219 (41%), Gaps = 8/219 (3%)
Query: 369 PSVNCCTFLLRKIVVSKQLDM--RLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGE 426
P V T L+ + ++D LF++++ + G V +++ GR+
Sbjct: 204 PDVYTNTVLINGLCKESKMDEANELFNEML----DKGLVPNGVTFTTLIDGHCKSGRVDL 259
Query: 427 CNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIK 486
+I K M G+ + + + L G +A + + M G + +LI
Sbjct: 260 ALEIYKQMLRQGYSPDLITYNTLIYGLCRKGDLKQARDLIVEMSMKGLKPDKITYTTLID 319
Query: 487 GHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDL 546
G C GDL+ A + ++M+E E A L++ C + RA+DA K + + L
Sbjct: 320 GSCKEGDLETAFELRKRMIE-ESIRLDDVAYTALISGLCQEGRAVDAEKMLREML-SVGL 377
Query: 547 KPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFV 585
KP + TY +I Q K A LL M+ G P V
Sbjct: 378 KPENGTYTMIINGFCKQGDVKTASKLLKEMQRDGHVPCV 416
Score = 56.2 bits (134), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 62/292 (21%), Positives = 115/292 (39%), Gaps = 5/292 (1%)
Query: 266 SNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLD 325
+ L++ VV + G + A +F E G + D ++ + + + +
Sbjct: 32 AKSLIQIVVSRKGKDSASA-VFAAILETKGAQRSDIYVFSGLITAYLESGFLRDAIECFR 90
Query: 326 EMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSK 385
R + + +TC KVL + K Y+ + C S+ L+ + K
Sbjct: 91 LTRKHKFWVPFDTCRKVLEHLMKLKYFKLVWGFYKEILECGYPTSLYFFNILMHRFC--K 148
Query: 386 QLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNM 445
+ ++RL V + G + N+++ I +G + + ++ AM G
Sbjct: 149 EGEIRLAQSVFDAITKCGLRPSVVSFNTLINGYIRLGDLDKGFRLKTAMHASGVHPDVYT 208
Query: 446 KSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMV 505
+ + L K DEANE + M G + +LI GHC +G +D A + +++M+
Sbjct: 209 NTVLINGLCKESKMDEANELFNEMLDKGLVPNGVTFTTLIDGHCKSGRVDLALEIYKQML 268
Query: 506 EKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELI 557
++G S + L+ C K A + + LKP TY LI
Sbjct: 269 -RQGYSPDLITYNTLIYGLCRKGDLKQARDLIVE-MSMKGLKPDKITYTTLI 318
>gi|255584017|ref|XP_002532754.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223527505|gb|EEF29631.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 721
Score = 56.6 bits (135), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 59/241 (24%), Positives = 98/241 (40%), Gaps = 9/241 (3%)
Query: 422 GRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMW 481
G+ E + K M E G A+ S + G+ D A F+D M + + +
Sbjct: 206 GKFNEAELLFKEMGEKGLCANHITYSILIDSFCRRGEMDNAIGFLDKMTKASIEFTVYPY 265
Query: 482 VSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCV 541
SLI G+C G+ A F +M++K G + L++ YC++ A K V+N +
Sbjct: 266 NSLINGYCKLGNASAAKYYFDEMIDK-GLTPTVVTYTSLISGYCNEGEWHKAFK-VYNEM 323
Query: 542 REYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPP---FVDPFIKYVSKSGTS 598
+ P T+ +I L +A+ L MK+ P + I+ +SG
Sbjct: 324 TAKGISPNTYTFTAIISGLCRANMMAEAIRLFGEMKERKIMPSEVTYNVMIEGHCRSGNI 383
Query: 599 DDAIAFLKGMTSKRF-PSMSVVLCLFAAFFQARRHSEAQDLLSKCPRYVRNHADVLNLLY 657
+A L M K F P L + R SEA++ + ++H + N+ Y
Sbjct: 384 SEAFHLLDEMVGKGFVPDTYTYRPLISGLCSVGRVSEAKEFVDDLH---KDHHKLNNMCY 440
Query: 658 S 658
S
Sbjct: 441 S 441
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 65/292 (22%), Positives = 112/292 (38%), Gaps = 29/292 (9%)
Query: 324 LDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVV 383
DEM KG + T ++ + +A +Y A P N TF ++
Sbjct: 285 FDEMIDKGLTPTVVTYTSLISGYCNEGEWHKAFKVYNEMTAKGISP--NTYTF---TAII 339
Query: 384 SKQLDMRLFSKVVRVF---RENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFI 440
S + ++ +R+F +E + ++ N +++ G + E +L M GF+
Sbjct: 340 SGLCRANMMAEAIRLFGEMKERKIMPSEVTYNVMIEGHCRSGNISEAFHLLDEMVGKGFV 399
Query: 441 ASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADC 500
+ + L S G+ EA EF+D + + + + +L+ G+C G A
Sbjct: 400 PDTYTYRPLISGLCSVGRVSEAKEFVDDLHKDHHKLNNMCYSALVHGYCKEGRFKDAVSA 459
Query: 501 FQKMVEKEGTSHAGYAIDLLVNTYCSKNRA--------IDACKFVHNCVREYDLKPWHTT 552
+ MVE+ G A+DL+ A K +HN + L+P
Sbjct: 460 CRVMVER------GVAMDLVCYAILIDGTAREHDTRALFGLLKEMHN----HGLRPDAVI 509
Query: 553 YEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPF---IKYVSKSGTSDDA 601
Y +I K+A L +M D G P V + I + K+G D A
Sbjct: 510 YTNMIDRHSKAGNLKEAFGLWDIMVDEGCLPNVVTYTALINGLCKAGLMDKA 561
Score = 47.4 bits (111), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 72/321 (22%), Positives = 120/321 (37%), Gaps = 46/321 (14%)
Query: 301 ESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYE 360
E +YN M R I + +LDEM KG+ + T ++ V EA + +
Sbjct: 367 EVTYNVMIEGHCRSGNISEAFHLLDEMVGKGFVPDTYTYRPLISGLCSVGRVSEAKEFVD 426
Query: 361 FAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALIS 420
+K + C + L+ K+ + RV E G ++ V A++
Sbjct: 427 DLHKDHHKLNNMCYSALVHG--YCKEGRFKDAVSACRVMVERG-----VAMDLVCYAILI 479
Query: 421 VGRMGECNK-----ILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSD 475
G E + +LK M G + + + + R S AG EA D M G
Sbjct: 480 DGTAREHDTRALFGLLKEMHNHGLRPDAVIYTNMIDRHSKAGNLKEAFGLWDIMVDEGCL 539
Query: 476 VGDKMWVSLIKGHCVAGDLDKAA------------------DCFQKMVEKEGT------- 510
+ +LI G C AG +DKA CF + + G
Sbjct: 540 PNVVTYTALINGLCKAGLMDKAELLSKETLVSDVTPNHITYGCFLDHLTRGGNMEKAVQL 599
Query: 511 SHA---GY-----AIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLV 562
HA G+ + ++L+ +C + +A K +H + + D+ P + TY +I
Sbjct: 600 HHAMLKGFLATTVSYNILIRGFCRLGKIEEATKLLHG-MTDNDILPDYITYSTIIYEQCK 658
Query: 563 QRGFKDALSLLCLMKDHGFPP 583
+ ++A+ L M D G P
Sbjct: 659 RSNLQEAIKLWHTMLDKGLKP 679
Score = 43.1 bits (100), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 84/394 (21%), Positives = 142/394 (36%), Gaps = 65/394 (16%)
Query: 146 EARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRNKM 205
EA R F + E++ S TYN+M+ G + E + L+D M KG+ ++ +
Sbjct: 350 EAIRLFGEMKERKIMP-SEVTYNVMIEGHCRSGNISEAFHLLDEMVGKGFVPDTYTYRPL 408
Query: 206 TEKFEKEGLESDLEKLKGIFATGSIDNSIEKVASRICKVVRSDIWGDDVERQLRDLNVTF 265
+ G+ + G + + E V DD+ + LN
Sbjct: 409 ---------------ISGLCSVGRVSEAKEFV--------------DDLHKDHHKLNNMC 439
Query: 266 SNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLD 325
+ LV + K A+ R E G V D Y + RE + +L
Sbjct: 440 YSALVHGYCKE--GRFKDAVSACRVMVERG-VAMDLVCYAILIDGTAREHDTRALFGLLK 496
Query: 326 EMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSK 385
EM + G + ++ R S+ +KEA L++ + P+V T L+ + +
Sbjct: 497 EMHNHGLRPDAVIYTNMIDRHSKAGNLKEAFGLWDIMVDEGCLPNVVTYTALINGLCKAG 556
Query: 386 QLD-MRLFSKVVRV----------------FRENGNV-----LTDAMLNSVLKALIS--- 420
+D L SK V GN+ L AML L +S
Sbjct: 557 LMDKAELLSKETLVSDVTPNHITYGCFLDHLTRGGNMEKAVQLHHAMLKGFLATTVSYNI 616
Query: 421 -------VGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASG 473
+G++ E K+L M + + S I + EA + M G
Sbjct: 617 LIRGFCRLGKIEEATKLLHGMTDNDILPDYITYSTIIYEQCKRSNLQEAIKLWHTMLDKG 676
Query: 474 SDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEK 507
+ L+ G C+AG+L+KA + +M+ +
Sbjct: 677 LKPDTLAYSFLVHGCCIAGELEKAFELRDEMIRR 710
>gi|115482712|ref|NP_001064949.1| Os10g0495200 [Oryza sativa Japonica Group]
gi|78708847|gb|ABB47822.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
sativa Japonica Group]
gi|113639558|dbj|BAF26863.1| Os10g0495200 [Oryza sativa Japonica Group]
Length = 782
Score = 56.6 bits (135), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 83/366 (22%), Positives = 143/366 (39%), Gaps = 16/366 (4%)
Query: 242 CKVVRSDI----WGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFV 297
C+ R D+ G+ V++ R +TF+ L DK + I R E G +
Sbjct: 103 CRAGRLDLGFAALGNVVKKGFRVDAITFTPLLKGLCADKRTSDAMD--IVLRRMTELGCI 160
Query: 298 KHDESSYNAMASVLGREDCIDRFWKVLDEM---RSKGYEMEMETCVKVLGRFSERNMVKE 354
D SYN + L E+ ++L M R G ++ + VL F + +
Sbjct: 161 P-DVFSYNNLLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYNTVLNGFFKEGDSDK 219
Query: 355 AVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAML-NS 413
A Y + P V + ++ + ++ +D + +V+ +NG V+ D M NS
Sbjct: 220 AYSTYHEMLDRGILPDVVTYSSIIAALCKAQAMDKAM--EVLNTMVKNG-VMPDCMTYNS 276
Query: 414 VLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASG 473
+L S G+ E LK M G + S + L G+ EA + D M G
Sbjct: 277 ILHGYCSSGQPKEAIGTLKKMRSDGVEPNVVTYSSLMNYLCKNGRSTEARKIFDSMTKRG 336
Query: 474 SDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDA 533
+ + +L++G+ G L + MV + G + ++L+ Y +K +D
Sbjct: 337 LEPDIATYRTLLQGYATKGALVEMHALLDLMV-RNGIQPDHHVFNILICAY-AKQEKVDQ 394
Query: 534 CKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPFIKYVS 593
V + +R++ L P Y +I L DA+ M D G P + + +
Sbjct: 395 AMLVFSKMRQHGLNPNVVCYGTVIDVLCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIH 454
Query: 594 KSGTSD 599
T D
Sbjct: 455 GLCTCD 460
Score = 55.5 bits (132), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/190 (25%), Positives = 81/190 (42%), Gaps = 6/190 (3%)
Query: 453 LSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSH 512
L +G D+A + + M G ++ SLI G C DKA + +M+++ G
Sbjct: 421 LCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHGLCTCDKWDKAEELILEMLDR-GICL 479
Query: 513 AGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSL 572
+ +++++C + R I++ K VR +KP TY LI + +A L
Sbjct: 480 NTIFFNSIIDSHCKEGRVIESEKLFDLMVR-IGVKPDIITYNTLIDGCCLAGKMDEATKL 538
Query: 573 LCLMKDHGFPPFVDPF---IKYVSKSGTSDDAIAFLKGMTSKRF-PSMSVVLCLFAAFFQ 628
L M G P + + I + DDA+A K M S P++ + F
Sbjct: 539 LASMVSVGVKPDIVTYGTLINGYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLFH 598
Query: 629 ARRHSEAQDL 638
RR + A++L
Sbjct: 599 TRRTAAAKEL 608
Score = 43.1 bits (100), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 42/209 (20%), Positives = 84/209 (40%), Gaps = 2/209 (0%)
Query: 297 VKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAV 356
++ D +N + +++ +D+ V +MR G + V+ + V +A+
Sbjct: 372 IQPDHHVFNILICAYAKQEKVDQAMLVFSKMRQHGLNPNVVCYGTVIDVLCKSGSVDDAM 431
Query: 357 DLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLK 416
+E + P++ T L+ + + D +++ + G L NS++
Sbjct: 432 LYFEQMIDEGLTPNIIVYTSLIHGLCTCDKWDKA--EELILEMLDRGICLNTIFFNSIID 489
Query: 417 ALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDV 476
+ GR+ E K+ M G + + AGK DEA + + M + G
Sbjct: 490 SHCKEGRVIESEKLFDLMVRIGVKPDIITYNTLIDGCCLAGKMDEATKLLASMVSVGVKP 549
Query: 477 GDKMWVSLIKGHCVAGDLDKAADCFQKMV 505
+ +LI G+C +D A F++MV
Sbjct: 550 DIVTYGTLINGYCRVSRMDDALALFKEMV 578
>gi|449445049|ref|XP_004140286.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g20740-like [Cucumis sativus]
gi|449531474|ref|XP_004172711.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g20740-like [Cucumis sativus]
Length = 726
Score = 56.6 bits (135), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 101/451 (22%), Positives = 170/451 (37%), Gaps = 54/451 (11%)
Query: 234 IEKVASRICKVVR--SDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALI---FF 288
+ +A I V R + WG V +L L + DLV V+ +++ FF
Sbjct: 86 LSPIARFIVDVFRKNQNQWGPPVISELNKLR-RVTPDLVAEVLKASHRRDSNSILASKFF 144
Query: 289 RWAEESGFVKHDESSYNAMASVLGRED---CIDRFWKVLDEMRSKGYEMEMETCVKVLGR 345
WA + H +SYNA A L R + D+ +++D E + E +++
Sbjct: 145 YWAGKQKGFHHTFASYNAFAYCLNRHNRFRAADQIPELMDSQGKPPSEKQFEILIRM--- 201
Query: 346 FSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNV 405
+ N +YE P V +L +V + LD+ L V R F+ENG V
Sbjct: 202 HCDANRGLRVYYVYEKMKKFGVVPRVFLYNRILDALVKTDHLDLAL--TVYRDFQENGLV 259
Query: 406 LTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEF 465
++K L GR+ E ++L M + + L+S +
Sbjct: 260 EESVTFMILIKGLCKAGRVDEMLELLARMRANLCKPDVFAYTAMVKVLASKDNLEGCLRV 319
Query: 466 MDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMV-------------------- 505
D M A + + +LI G C G K + FQ+M
Sbjct: 320 WDEMRADRVEPDVMAYGTLIIGLCKVGRAQKGYELFQEMKGKRILIDRAIYGTLIEAFVQ 379
Query: 506 -EKEGTS--------HAGYAIDL-----LVNTYCSKNRAIDACKFVHNCVREYDLKPWHT 551
EK G + +GY DL L+ C+ N+ A K +RE DLKP
Sbjct: 380 DEKVGLACDLFKDLVDSGYRADLGIYHSLIKGLCNVNQVDKAYKLFQLTIRE-DLKPDFE 438
Query: 552 TYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPFIKYVSKSGTSDDAIA----FLKG 607
T + ++ + D L+ L++ F D K++S +D I+ G
Sbjct: 439 TVKPIMMMYVETGRMDDFWKLVSLLQKLEF-SVDDVLSKFLSFMVEEEDKISVALDVFHG 497
Query: 608 MTSKRFPSMSVVLCLFAAFFQARRHSEAQDL 638
M K + S+++ + A + + ++A ++
Sbjct: 498 MIDKGYGSVALYNVMVGALHRYGQANKALEI 528
>gi|356523086|ref|XP_003530173.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At2g17670-like [Glycine max]
Length = 456
Score = 56.6 bits (135), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 48/193 (24%), Positives = 82/193 (42%), Gaps = 2/193 (1%)
Query: 368 KPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGEC 427
KP + T L+ + K L++R ++V V E G L + N+++K + R E
Sbjct: 218 KPDLVTYTILIDNVCNGKNLNLREAMRLVSVLHEEGFKLDCFVYNTIMKGYCVLSRGSEA 277
Query: 428 NKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKG 487
++ M+E G + + F LS +G+ EA + + M G + + SL+ G
Sbjct: 278 IEVYNKMKEEGVEPDLVTYNTLIFGLSKSGRVTEARKLLRVMAEKGYFPDEVTYTSLMNG 337
Query: 488 HCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLK 547
C GD A +M E +G S + L++ C A KF + +R LK
Sbjct: 338 LCRKGDALGALALLGEM-EAKGCSPNACTYNTLLHGLCKARLVEKAVKF-YQVIRAGGLK 395
Query: 548 PWHTTYEELIKNL 560
+Y ++ L
Sbjct: 396 LDTASYGTFVRAL 408
Score = 39.3 bits (90), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 27/121 (22%), Positives = 52/121 (42%), Gaps = 3/121 (2%)
Query: 463 NEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVN 522
++ ++ M A+G ++ C AG LD A + ++ K Y + LV
Sbjct: 135 HQXLNLMLAAGITPDTATADVAVRSLCSAGRLDHAVELIKEFASKHCPPDT-YTFNFLVK 193
Query: 523 TYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQR--GFKDALSLLCLMKDHG 580
C + F+ ++D+KP TY LI N+ + ++A+ L+ ++ + G
Sbjct: 194 HLCKSSTITTVYAFIDEMREKFDVKPDLVTYTILIDNVCNGKNLNLREAMRLVSVLHEEG 253
Query: 581 F 581
F
Sbjct: 254 F 254
>gi|242082678|ref|XP_002441764.1| hypothetical protein SORBIDRAFT_08g002022 [Sorghum bicolor]
gi|241942457|gb|EES15602.1| hypothetical protein SORBIDRAFT_08g002022 [Sorghum bicolor]
Length = 695
Score = 56.6 bits (135), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 77/356 (21%), Positives = 152/356 (42%), Gaps = 28/356 (7%)
Query: 300 DESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLY 359
D +YN++ G+ ++ +++ EMR G ++ T ++ FS+ +++A Y
Sbjct: 234 DVVTYNSLIDGYGKCGDLEEVEQLVSEMRKSGCAADVVTYNALINCFSKFGRMEKA---Y 290
Query: 360 EFAMACKNKPSV-NCCTFLLRKIVVSK----QLDMRLFSKVVRVFRENGNVLTDAMLNSV 414
+ K + V N TF K Q M+LF+++ R G + + S+
Sbjct: 291 SYFGEMKRQGVVANVVTFSTFVDAFCKEGLVQEAMKLFAQM----RVRGMMPNEFTYTSL 346
Query: 415 LKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGS 474
+ GR+ + +L M G + + + + L GK EA+ + ME G
Sbjct: 347 VDGTCKAGRLDDAIVLLDEMVHQGLVPNVVTYTVMVDGLCKEGKVAEADNVLSLMERGGV 406
Query: 475 DVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDL-----LVNTYCSKNR 529
+ ++ +LI GH + + ++A D +M K G +D+ L+ C K++
Sbjct: 407 KANELLYTTLIHGHFMNNNSERALDLLNQMKNK------GMELDVSLYGTLIWGLC-KDQ 459
Query: 530 AIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPF- 588
+D K + + + L+P Y ++ L +A++LL + D GF P V +
Sbjct: 460 KVDEAKSLLHKMAGCGLRPNTVIYTTIMDALFKAGKESEAVALLHKILDSGFQPNVVTYC 519
Query: 589 --IKYVSKSGTSDDAIAFLKGMTSKRF-PSMSVVLCLFAAFFQARRHSEAQDLLSK 641
I + K+G+ +AI+ M P++ L F + ++A L+++
Sbjct: 520 ALIDGLCKAGSISEAISHFNKMRELGLDPNVQAYTALIDGFCKIGSLNKAMHLMNE 575
Score = 47.8 bits (112), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 94/435 (21%), Positives = 177/435 (40%), Gaps = 25/435 (5%)
Query: 151 FNWVLE---KESERLSSKTYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRNKMTE 207
FN V++ KE E + ++ + ++ +G V + L+D GYG K +
Sbjct: 203 FNIVIDFLCKEGELVEARALFVRMKAMGCSPDVVTYNSLID-----GYG-------KCGD 250
Query: 208 KFEKEGLESDLEKLKGIFATGSIDNSIEKVASRICKVVRSDIWGDDVERQLRDLNV-TFS 266
E E L S++ K G A N++ S+ ++ ++ + +++RQ NV TFS
Sbjct: 251 LEEVEQLVSEMRK-SGCAADVVTYNALINCFSKFGRMEKAYSYFGEMKRQGVVANVVTFS 309
Query: 267 NDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDE 326
+ F + L E K F G + +E +Y ++ + +D +LDE
Sbjct: 310 TFVDAFCKEGLVQEAMK---LFAQMRVRGMMP-NEFTYTSLVDGTCKAGRLDDAIVLLDE 365
Query: 327 MRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQ 386
M +G + T ++ + V EA ++ K + T L+ ++
Sbjct: 366 MVHQGLVPNVVTYTVMVDGLCKEGKVAEADNVLSLMERGGVKANELLYTTLIHGHFMNNN 425
Query: 387 LDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMK 446
+ L ++ + G L ++ +++ L ++ E +L M G ++ +
Sbjct: 426 SERAL--DLLNQMKNKGMELDVSLYGTLIWGLCKDQKVDEAKSLLHKMAGCGLRPNTVIY 483
Query: 447 SKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVE 506
+ I L AGK+ EA + + SG + +LI G C AG + +A F KM E
Sbjct: 484 TTIMDALFKAGKESEAVALLHKILDSGFQPNVVTYCALIDGLCKAGSISEAISHFNKMRE 543
Query: 507 KEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGF 566
G A L++ +C K +++ + N + + + Y LI + Q
Sbjct: 544 L-GLDPNVQAYTALIDGFC-KIGSLNKAMHLMNEMIDKGMSLDKVVYTSLIDGYMKQANL 601
Query: 567 KDALSLLCLMKDHGF 581
+DA +L M + G
Sbjct: 602 QDAFALKTKMIESGL 616
>gi|334188438|ref|NP_200395.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|332009303|gb|AED96686.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 1136
Score = 56.6 bits (135), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 80/349 (22%), Positives = 138/349 (39%), Gaps = 42/349 (12%)
Query: 300 DESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLY 359
D +++N + +VL E ++ ++ +M GY + T VL + ++ K A++L
Sbjct: 232 DVATFNILINVLCAEGSFEKSSYLMQKMEKSGYAPTIVTYNTVLHWYCKKGRFKAAIELL 291
Query: 360 EFAMACKNKPSVNCCTF--LLRKIVVSKQL--------DMR---------LFSKVVRVFR 400
+ M K + + CT+ L+ + S ++ DMR ++ ++ F
Sbjct: 292 DH-MKSKGVDA-DVCTYNMLIHDLCRSNRIAKGYLLLRDMRKRMIHPNEVTYNTLINGFS 349
Query: 401 ENGNVLTDAML----------------NSVLKALISVGRMGECNKILKAMEEGGFIASSN 444
G VL + L N+++ IS G E K+ ME G S
Sbjct: 350 NEGKVLIASQLLNEMLSFGLSPNHVTFNALIDGHISEGNFKEALKMFYMMEAKGLTPSEV 409
Query: 445 MKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKM 504
+ L + D A F M+ +G VG + +I G C G LD+A +M
Sbjct: 410 SYGVLLDGLCKNAEFDLARGFYMRMKRNGVCVGRITYTGMIDGLCKNGFLDEAVVLLNEM 469
Query: 505 VEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQR 564
K+G L+N +C R A + V R L P Y LI N
Sbjct: 470 -SKDGIDPDIVTYSALINGFCKVGRFKTAKEIVCRIYR-VGLSPNGIIYSTLIYNCCRMG 527
Query: 565 GFKDALSLL--CLMKDHGFPPFV-DPFIKYVSKSGTSDDAIAFLKGMTS 610
K+A+ + +++ H F + + + K+G +A F++ MTS
Sbjct: 528 CLKEAIRIYEAMILEGHTRDHFTFNVLVTSLCKAGKVAEAEEFMRCMTS 576
>gi|413926774|gb|AFW66706.1| hypothetical protein ZEAMMB73_789977 [Zea mays]
Length = 642
Score = 56.6 bits (135), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 87/359 (24%), Positives = 134/359 (37%), Gaps = 32/359 (8%)
Query: 293 ESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMV 352
+ G + D+ +++ M S +D ++D MR G+ +E+ + L V
Sbjct: 273 QHGLPRPDQVTFDVMLSGFCDAGFVDEARVLVDIMRCGGFLRRVESYNRWLSGLVRNGRV 332
Query: 353 KEAVDLYEFAMACKNKPSVNCCTFLLRKIVVS------KQLDMRLFSKVVRVFRENGNVL 406
EA +L + P N T+ I+VS K D R +R + +V+
Sbjct: 333 GEAHELLREMAHERIHP--NSYTY---NIIVSGLCKEGKAFDARRVENFIRSGVMSPDVV 387
Query: 407 TDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFM 466
T S+L A S G + N+IL M + G +S + + L AG+ EA +
Sbjct: 388 T---YTSLLHAYCSKGNIAAANRILDEMAQKGCAPNSFTYNVLLQSLWRAGRTTEAERLL 444
Query: 467 DHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCS 526
+ M G + +I G C LD A M E+ T A+ L N++ S
Sbjct: 445 ERMSEKGYSLDTAGCNIIIDGLCRNSKLDVAMGIVDGMWEEGST-----ALGRLGNSFLS 499
Query: 527 KNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPP--- 583
+ C+ P TY LI L + F +A L M P
Sbjct: 500 ---VVSDSSISQRCL------PDRITYSILISALCKEGRFDEAKKKLLEMIVKDISPDSV 550
Query: 584 FVDPFIKYVSKSGTSDDAIAFLKGMTSKRF-PSMSVVLCLFAAFFQARRHSEAQDLLSK 641
D FI K G + AI L+ M K PS L F + + E L+S+
Sbjct: 551 IYDTFIHGYCKHGKTSLAIKVLRDMEKKGCNPSTRTYNLLIRGFEEKHKSDEIMKLMSE 609
Score = 42.0 bits (97), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 50/227 (22%), Positives = 91/227 (40%), Gaps = 9/227 (3%)
Query: 394 KVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEG---GFIASSNMKSKIA 450
++V R G NS + AL GR+ + +I K M+E G + +
Sbjct: 228 RLVERMRVQGLAPNVVTFNSRISALCKAGRVLDAYRIFKDMQEDWQHGLPRPDQVTFDVM 287
Query: 451 FR-LSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEG 509
AG DEA +D M G + + + G G + +A + ++M E
Sbjct: 288 LSGFCDAGFVDEARVLVDIMRCGGFLRRVESYNRWLSGLVRNGRVGEAHELLREMAH-ER 346
Query: 510 TSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDA 569
Y +++V+ C + +A DA + V N +R + P TY L+ + A
Sbjct: 347 IHPNSYTYNIIVSGLCKEGKAFDA-RRVENFIRSGVMSPDVVTYTSLLHAYCSKGNIAAA 405
Query: 570 LSLLCLMKDHGFPP---FVDPFIKYVSKSGTSDDAIAFLKGMTSKRF 613
+L M G P + ++ + ++G + +A L+ M+ K +
Sbjct: 406 NRILDEMAQKGCAPNSFTYNVLLQSLWRAGRTTEAERLLERMSEKGY 452
>gi|297816792|ref|XP_002876279.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297322117|gb|EFH52538.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 850
Score = 56.6 bits (135), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 66/314 (21%), Positives = 125/314 (39%), Gaps = 11/314 (3%)
Query: 303 SYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFA 362
++N + + ++ D ++++M G + + L +RN + EA +LY
Sbjct: 164 AFNYLLNAYSKDRQTDYAVDIVNQMLELGVIPFVPYVNRTLSALVQRNSITEAKELYSRM 223
Query: 363 MACKNKPSVNCCTFLLRKIVVSKQLD--MRLFSKVVRVFRENGNVLTDAMLNSVLKALIS 420
+A L+R + ++ + +FS+ + E ++L + + K L
Sbjct: 224 VAIGVDGDNGTTQLLMRASLREEKPAEALEVFSRAIERGAEPDSLLYSLAVQACCKTL-- 281
Query: 421 VGRMGECNKILKAMEEGGF-IASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDK 479
+ N +L+ M+E + S + + G ++A + D M + G +
Sbjct: 282 --NLAMANSLLREMKEKKLCVPSQETYTSVILASVKQGNMEDAIRWKDEMVSDGISMNVV 339
Query: 480 MWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHN 539
SLI GHC DL A D F KM E EG S +L+ + SKN ++ +
Sbjct: 340 AATSLITGHCKNNDLGSALDLFYKM-ENEGPSPNSVTFSVLIERF-SKNGEMEKALEFYK 397
Query: 540 CVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPP--FVDPFIKYVSKSGT 597
+ L P +I+ L + ++AL L + G + + ++ K G
Sbjct: 398 KMESLGLTPSVFHVHTIIQGWLKGQKHEEALKLFDESFETGLANVFICNTILSWLCKQGK 457
Query: 598 SDDAIAFLKGMTSK 611
D A L+ M S+
Sbjct: 458 IDKATELLRKMESR 471
Score = 47.0 bits (110), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 76/334 (22%), Positives = 134/334 (40%), Gaps = 22/334 (6%)
Query: 314 EDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNC 373
ED I WK DEM S G M + ++ + N + A+DL+ + M + PS N
Sbjct: 320 EDAIR--WK--DEMVSDGISMNVVAATSLITGHCKNNDLGSALDLF-YKMENEG-PSPNS 373
Query: 374 CTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKA 433
TF + SK +M + + G + ++++++ + + E K+
Sbjct: 374 VTFSVLIERFSKNGEMEKALEFYKKMESLGLTPSVFHVHTIIQGWLKGQKHEEALKLFDE 433
Query: 434 MEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGD 493
E G +A+ + + I L GK D+A E + ME+ G + +++ HC +
Sbjct: 434 SFETG-LANVFICNTILSWLCKQGKIDKATELLRKMESRGIGPNVVSYNNVMLAHCRKKN 492
Query: 494 LDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTY 553
+D A F M+EK G Y +L++ C KN V N + +++ Y
Sbjct: 493 MDLARTVFSNMLEK-GLKPNNYTYSILIDG-CFKNHDEQNVLEVVNQMTSSNIEVNGVVY 550
Query: 554 EELIKNLLVQRGFKDALSLLCLMKDH--------GFPPFVDPFIKYVSKSGTSDDAIAFL 605
+ +I L A LL M + + +D FI K G D A+A
Sbjct: 551 QTIINGLCKVGQTSKARELLANMIEEKRFCVSCMSYNSIIDGFI----KEGEMDYAVAAY 606
Query: 606 KGMTSKRF-PSMSVVLCLFAAFFQARRHSEAQDL 638
+ M + P++ L + R +A ++
Sbjct: 607 EEMCANGISPNVITYTSLMDGLCKNNRMDQALEM 640
Score = 40.0 bits (92), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 51/250 (20%), Positives = 106/250 (42%), Gaps = 35/250 (14%)
Query: 303 SYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFA 362
+Y ++ L + + +D+ ++ DEM++KG ++++ ++ F +++ ++ A L+
Sbjct: 620 TYTSLMDGLCKNNRMDQALEMRDEMKNKGVKLDIPAYGALIHGFCKKSNMESASALFSEL 679
Query: 363 MACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNV-----LTDAMLNSVLKA 417
+ PS +++ ++ FR GN+ L ML L+
Sbjct: 680 LEEGLNPS------------------QPVYNSLISGFRNLGNMVAALDLYKKMLKDGLRC 721
Query: 418 LISV------GRMGECNKILKA-----MEEGGFIASSNMKSKIAFRLSSAGKKDEANEFM 466
+ G + E N IL + M+ G + M + I LS G+ + +
Sbjct: 722 DLGTYTTLIDGLLKEGNLILASDLYTEMQAVGLVPDEIMYTVIVNGLSKKGQFVKVVKMF 781
Query: 467 DHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCS 526
+ M+ + ++ ++I GH G+LD+A +M++K G G D+LV+
Sbjct: 782 EEMKKNNVTPNVLIYNAVIAGHYREGNLDEAFRLHDEMLDK-GILPDGATFDILVSGKVG 840
Query: 527 KNRAIDACKF 536
K + I A
Sbjct: 841 KFQPIRAASL 850
>gi|255660856|gb|ACU25597.1| pentatricopeptide repeat-containing protein [Bouchea fluminensis]
Length = 418
Score = 56.6 bits (135), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 55/226 (24%), Positives = 92/226 (40%), Gaps = 14/226 (6%)
Query: 337 ETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVV 396
+TC KVL + + Y+ + C PS+ L+ + K+ +MRL V
Sbjct: 102 DTCRKVLEHLMKLRYFRLVWGFYKEILECGYPPSLYFFNILMHRF--CKEGEMRLAQMVF 159
Query: 397 RVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSA 456
+ + N+++ I +G + E ++ AM G S + L
Sbjct: 160 DAITKWSLRPSVVSFNTLMNGYIRLGDLDEGFRLKSAMHATGVQPDVYTYSVLINGLCKE 219
Query: 457 GKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYA 516
K DEANE ++ M +G + +LI GHC G +D A + +++M+ + G+
Sbjct: 220 SKMDEANEMLNEMLDNGLVPNGVTFTTLIDGHCKNGKVDLAMEIYKQMLSQ------GFL 273
Query: 517 IDL-----LVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELI 557
DL L+ C + A V + + LKP TY LI
Sbjct: 274 PDLITYNTLIYGLCRRGDLGQARDLVEEMIMK-GLKPDKITYTTLI 318
Score = 47.0 bits (110), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 43/185 (23%), Positives = 76/185 (41%), Gaps = 2/185 (1%)
Query: 401 ENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKD 460
+NG V +++ G++ +I K M GF+ + + + L G
Sbjct: 234 DNGLVPNGVTFTTLIDGHCKNGKVDLAMEIYKQMLSQGFLPDLITYNTLIYGLCRRGDLG 293
Query: 461 EANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLL 520
+A + ++ M G + +LI G C GDL+ + ++M+ +E L
Sbjct: 294 QARDLVEEMIMKGLKPDKITYTTLIDGSCKEGDLEITFELRKRMI-RENIRLDEVTYTAL 352
Query: 521 VNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHG 580
++ C + RA DA K + + LKP + TY ++ K A LL M+ +G
Sbjct: 353 ISGLCREGRAGDAEKMLREML-TVGLKPDNGTYTMIMNEFCKTGDVKTASKLLREMQRNG 411
Query: 581 FPPFV 585
P V
Sbjct: 412 PVPGV 416
>gi|8843735|dbj|BAA97283.1| unnamed protein product [Arabidopsis thaliana]
Length = 1274
Score = 56.2 bits (134), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 83/366 (22%), Positives = 143/366 (39%), Gaps = 43/366 (11%)
Query: 300 DESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLY 359
D +++N + +VL E ++ ++ +M GY + T VL + ++ K A++L
Sbjct: 192 DVATFNILINVLCAEGSFEKSSYLMQKMEKSGYAPTIVTYNTVLHWYCKKGRFKAAIELL 251
Query: 360 EFAMACKNKPSVNCCTF--LLRKIVVSKQL--------DMR---------LFSKVVRVFR 400
+ M K + + CT+ L+ + S ++ DMR ++ ++ F
Sbjct: 252 DH-MKSKGVDA-DVCTYNMLIHDLCRSNRIAKGYLLLRDMRKRMIHPNEVTYNTLINGFS 309
Query: 401 ENGNVLTDAML----------------NSVLKALISVGRMGECNKILKAMEEGGFIASSN 444
G VL + L N+++ IS G E K+ ME G S
Sbjct: 310 NEGKVLIASQLLNEMLSFGLSPNHVTFNALIDGHISEGNFKEALKMFYMMEAKGLTPSEV 369
Query: 445 MKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKM 504
+ L + D A F M+ +G VG + +I G C G LD+A +M
Sbjct: 370 SYGVLLDGLCKNAEFDLARGFYMRMKRNGVCVGRITYTGMIDGLCKNGFLDEAVVLLNEM 429
Query: 505 VEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQR 564
K+G L+N +C R A + V R L P Y LI N
Sbjct: 430 -SKDGIDPDIVTYSALINGFCKVGRFKTAKEIVCRIYR-VGLSPNGIIYSTLIYNCCRMG 487
Query: 565 GFKDALSLL--CLMKDHGFPPFV-DPFIKYVSKSGTSDDAIAFLKGMTSKR-FPSMSVVL 620
K+A+ + +++ H F + + + K+G +A F++ MTS P+
Sbjct: 488 CLKEAIRIYEAMILEGHTRDHFTFNVLVTSLCKAGKVAEAEEFMRCMTSDGILPNTVSFD 547
Query: 621 CLFAAF 626
CL +
Sbjct: 548 CLINGY 553
>gi|255574927|ref|XP_002528370.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223532238|gb|EEF34042.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 712
Score = 56.2 bits (134), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 105/539 (19%), Positives = 208/539 (38%), Gaps = 75/539 (13%)
Query: 111 FSDVNDISKQLELSGVVFTHEMVLKVLKNL--ESSPDEARRFFNWV-------------- 154
FS + S LE++ THE V+ V+ +L E+ + FFNWV
Sbjct: 83 FSKPSSPSLNLEINPNSLTHEQVITVVASLAQEAGSVVSLSFFNWVIGFSKFRHFMRLYI 142
Query: 155 ------LEKESERLSSKTYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRNKMTEK 208
L ++ +++ M+R G ++E +V M+ G + + + N + +
Sbjct: 143 VCATTFLNNDNLDRATEVMQCMVRSFSEIGKLKEAVNMVIEMQNHGLVLKARILNFVIDV 202
Query: 209 FEKEGLESDLEKLKGIFATGSI---DNSIEKVASRICKVVRSDIWGDDVERQLRDL---N 262
G EK+ ++ S + + C++ R DV+R L+D+
Sbjct: 203 ALALGFVDYAEKVFDEMLDRAVVPDSTSYKLMVVGYCRMGRI----SDVDRWLKDMIERG 258
Query: 263 VTFSNDLVKFVVDKLGDEP--KKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRF 320
N ++ ++ +A +F+ + G + + +++++ + L + I +
Sbjct: 259 YAVDNATCTLMISTFSEKGFVNRAFWYFKKWVQMG-LNPNLINFSSLINGLCKIGSIKQA 317
Query: 321 WKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKN-KPSVNCCTFLLR 379
+++L+EM KG++ + T ++ ++ ++A L+ + N KP+V T ++
Sbjct: 318 FEMLEEMVRKGWKPNVYTHTALIDGLCKKGWTEKAFRLFLKLVRSDNYKPNVYTYTCMIN 377
Query: 380 KIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGF 439
++L+ R ++R+ +E G V ++ G G +++ M + GF
Sbjct: 378 GYCKEEKLN-RAEMLLIRM-KEQGLVPNTNTYTCLIDGHCKAGNFGRAYELMDLMGKEGF 435
Query: 440 IASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAAD 499
+ + I L G+ EA + + SG + LI C D +A
Sbjct: 436 TPNIFTYNAIIDGLCKKGRFPEAYKLLRRGLKSGLHADKVTYTILISEFCRQTDNKQALA 495
Query: 500 CFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAID--------------------------- 532
F +M K G + ++L+ T+C + + +
Sbjct: 496 IFSRMF-KVGLQPDMHTYNVLIATFCRQKKVEESEKLFEEAVGLGLLPTKETYTSMICGY 554
Query: 533 --------ACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPP 583
A KF H +R+Y KP TY LI L + +A L M D+G P
Sbjct: 555 CRDGHISSAIKFFHK-MRDYGCKPDSITYGALISGLCNESKLDEACQLYETMIDNGLSP 612
Score = 46.6 bits (109), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 47/193 (24%), Positives = 75/193 (38%), Gaps = 5/193 (2%)
Query: 453 LSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSH 512
L G +A E ++ M G +LI G C G +KA F K+V +
Sbjct: 308 LCKIGSIKQAFEMLEEMVRKGWKPNVYTHTALIDGLCKKGWTEKAFRLFLKLVRSDNYKP 367
Query: 513 AGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSL 572
Y ++N YC K ++ + + ++E L P TY LI F A L
Sbjct: 368 NVYTYTCMINGYC-KEEKLNRAEMLLIRMKEQGLVPNTNTYTCLIDGHCKAGNFGRAYEL 426
Query: 573 LCLMKDHGFPPFV---DPFIKYVSKSGTSDDAIAFL-KGMTSKRFPSMSVVLCLFAAFFQ 628
+ LM GF P + + I + K G +A L +G+ S L + F +
Sbjct: 427 MDLMGKEGFTPNIFTYNAIIDGLCKKGRFPEAYKLLRRGLKSGLHADKVTYTILISEFCR 486
Query: 629 ARRHSEAQDLLSK 641
+ +A + S+
Sbjct: 487 QTDNKQALAIFSR 499
>gi|449462477|ref|XP_004148967.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
mitochondrial-like [Cucumis sativus]
Length = 597
Score = 56.2 bits (134), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 51/196 (26%), Positives = 83/196 (42%), Gaps = 6/196 (3%)
Query: 453 LSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSH 512
L GK EA + ++ M G + SLI+G C+ GDL+ A + F M K G
Sbjct: 314 LCKEGKVIEAKDLLEVMIQRGIVPNLLTYNSLIEGFCLVGDLNSARELFVSMPSK-GCEP 372
Query: 513 AGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSL 572
+L+N YC ++ +A K ++N + + +P TY L+ L DA L
Sbjct: 373 DVICYTVLINGYCKTSKVEEAMK-LYNGMLQVGKRPDVKTYGALLTGLFQGGKVGDAKKL 431
Query: 573 LCLMKDHGFPP---FVDPFIKYVSKSGTSDDAIAFLKGMTSKRFP-SMSVVLCLFAAFFQ 628
+MK +G P F+ + K+G +A+ + S + CL +
Sbjct: 432 FGVMKVYGIPGDLYIYGIFLNGLCKNGCLFEAMELFNKLKSYNIKLDIECFNCLIDGLCK 491
Query: 629 ARRHSEAQDLLSKCPR 644
A + A +L K P+
Sbjct: 492 AGKLETAWELFEKLPQ 507
Score = 48.5 bits (114), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 53/282 (18%), Positives = 121/282 (42%), Gaps = 8/282 (2%)
Query: 297 VKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAV 356
V+ + ++N + VL +E + +L+ M +G + T ++ F + A
Sbjct: 300 VQPNVVTFNVLIDVLCKEGKVIEAKDLLEVMIQRGIVPNLLTYNSLIEGFCLVGDLNSAR 359
Query: 357 DLYEFAMACKNKPSVNCCTFLLRKIVVSKQLD--MRLFSKVVRVFRENGNVLTDAMLNSV 414
+L+ + +P V C T L+ + +++ M+L++ +++V + A+L +
Sbjct: 360 ELFVSMPSKGCEPDVICYTVLINGYCKTSKVEEAMKLYNGMLQVGKRPDVKTYGALLTGL 419
Query: 415 LKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGS 474
+ G++G+ K+ M+ G + L G EA E + +++
Sbjct: 420 FQG----GKVGDAKKLFGVMKVYGIPGDLYIYGIFLNGLCKNGCLFEAMELFNKLKSYNI 475
Query: 475 DVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDAC 534
+ + + LI G C AG L+ A + F+K+ ++E +++++ +C + + A
Sbjct: 476 KLDIECFNCLIDGLCKAGKLETAWELFEKLPQEELQPDV-VTYNIMIHEFCRGGQVVKA- 533
Query: 535 KFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLM 576
+ + + P TY LI+ + + + LL +M
Sbjct: 534 NILFQKMEKNGCTPDKITYATLIRGFFESKKLEKVVELLHMM 575
>gi|302798519|ref|XP_002981019.1| hypothetical protein SELMODRAFT_114007 [Selaginella moellendorffii]
gi|300151073|gb|EFJ17720.1| hypothetical protein SELMODRAFT_114007 [Selaginella moellendorffii]
Length = 448
Score = 56.2 bits (134), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 80/357 (22%), Positives = 147/357 (41%), Gaps = 23/357 (6%)
Query: 293 ESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMV 352
E G V D SYN + L + +D+ +L M +GY+ ++ TC ++ +F E V
Sbjct: 3 EDGVVP-DRDSYNLLVRGLTKLSSVDQARAMLSTMVGEGYDPDVVTCGLLVDKFCEMKRV 61
Query: 353 KEAVDLYEFAMACKNKPSVNCCTF--LLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAM 410
E +L++ + N +V + +L+ ++ S D K + +G++
Sbjct: 62 GEVCELFQELES--NGVAVGMLAYNAILKALMCSGDFDGGF--KFSDIAVGDGSLPHVLA 117
Query: 411 LNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHME 470
++L LI G+ E ++++ M + + I+ L + D+A + D M
Sbjct: 118 YKTMLDCLIKTGKTREASEVVGEMIKKSVPDGMTYTALISV-LCKHNRADDAMKVFDIMV 176
Query: 471 ASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKE-GTSHAGYAIDLLVNTYCSKNR 529
++ SL+ HC LD A F +M+++ G S + Y LL+ C+ R
Sbjct: 177 EKEIVPNVDVYTSLLAAHCRTRKLDGAYRLFVEMIQRGYGPSASTYG--LLLRCLCNGGR 234
Query: 530 AIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRG-------FKDALSLLCLMKDHGFP 582
+ A +H+ +R P TY LI + FK+ L D G
Sbjct: 235 SYLAYD-IHSSMRSRGHVPDENTYASLIYGCCMAGRITEAKVLFKEVLEGEKAQLDAG-- 291
Query: 583 PFVDPFIKYVSKSGTSDDAIAFLKGMTSKR-FPSMSVVLCLFAAFFQARRHSEAQDL 638
+ I+ + ++ ++A+ GM K P++ L FF+A +A L
Sbjct: 292 -IYNVLIEGLCRASKVEEALEVTAGMVDKGCIPTLQTYNALIMGFFKANEVDKALQL 347
Score = 50.1 bits (118), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 52/231 (22%), Positives = 90/231 (38%), Gaps = 5/231 (2%)
Query: 412 NSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEA 471
S+L A ++ ++ M + G+ S++ + L + G+ A + M +
Sbjct: 188 TSLLAAHCRTRKLDGAYRLFVEMIQRGYGPSASTYGLLLRCLCNGGRSYLAYDIHSSMRS 247
Query: 472 SGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAI 531
G + + SLI G C+AG + +A F++++E E ++L+ C ++
Sbjct: 248 RGHVPDENTYASLIYGCCMAGRITEAKVLFKEVLEGEKAQLDAGIYNVLIEGLCRASKVE 307
Query: 532 DACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPP---FVDPF 588
+A + V + P TY LI AL L M++ GF P F
Sbjct: 308 EALEVTAGMV-DKGCIPTLQTYNALIMGFFKANEVDKALQLFRAMEEKGFSPNTMIYSTF 366
Query: 589 IKYVSKSGTSDDAIAFLKGMTSKR-FPSMSVVLCLFAAFFQARRHSEAQDL 638
I + K G ++A F + + P L F A R EA L
Sbjct: 367 IDGLCKVGKINEAHEFFQQSVERGCVPDNVTYNALIRGLFGANRMDEAHRL 417
>gi|410109897|gb|AFV61028.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
macropoda]
Length = 412
Score = 56.2 bits (134), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 66/295 (22%), Positives = 113/295 (38%), Gaps = 11/295 (3%)
Query: 266 SNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLD 325
+ L++ VV + G A +F E G + D ++ + + + +
Sbjct: 19 AKSLIQVVVSRKGKGSASA-VFAAIVETKGTQRSDLYVFSGLITAYLESGFLRDAIECYR 77
Query: 326 EMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSK 385
R + + +TC KVL + K YE + C S+ L+ + K
Sbjct: 78 LTREHKFWVPFDTCRKVLEHLMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRF--CK 135
Query: 386 QLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNM 445
D+R+ V + G + N+++ I +G + E ++ AM G
Sbjct: 136 DGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYT 195
Query: 446 KSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMV 505
S + L K D+ANE D M G + +LI GHC G +D A + +++M+
Sbjct: 196 YSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQML 255
Query: 506 EKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREY---DLKPWHTTYEELI 557
+ S + L+ C K K H+ + E +LKP TY LI
Sbjct: 256 S-QSLSPDLITYNTLIYGLCKKGDL----KQAHHLIDEMSMKELKPDKITYTTLI 305
Score = 41.6 bits (96), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 40/164 (24%), Positives = 65/164 (39%), Gaps = 2/164 (1%)
Query: 422 GRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMW 481
GR+ +I K M + + + L G +A+ +D M +
Sbjct: 242 GRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSMKELKPDKITY 301
Query: 482 VSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCV 541
+LI G C GDLD A + ++M++ E A L++ C + R++DA K + +
Sbjct: 302 TTLIDGCCKEGDLDSAFEHRKRMIQ-ENIRLDEVAYTALISGLCQEGRSVDAEKMLREML 360
Query: 542 REYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFV 585
LKP TY +I + LL M+ G P V
Sbjct: 361 -NVGLKPDSRTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSV 403
>gi|410109903|gb|AFV61031.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
montevidensis]
Length = 431
Score = 56.2 bits (134), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 66/295 (22%), Positives = 112/295 (37%), Gaps = 11/295 (3%)
Query: 266 SNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLD 325
+ L++ VV + G A +F E G + D ++ + + + +
Sbjct: 38 AKSLIQVVVSRKGKGSASA-VFAAIFETKGTQRSDLYVFSGLITAYLESGFLRDAIECYR 96
Query: 326 EMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSK 385
R + + +TC KVL + K YE + C S+ L+ + K
Sbjct: 97 LTREHKFWVPFDTCRKVLEHLMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFC--K 154
Query: 386 QLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNM 445
D+R+ V + G + N+++ I +G + E ++ AM G
Sbjct: 155 DGDIRIAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYT 214
Query: 446 KSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMV 505
S + L K D+ANE D M G + +LI GHC G +D A + +++M+
Sbjct: 215 YSVLINGLCKESKIDDANELFDEMLVKGLVPNSVTFTTLIDGHCKNGRVDLAMEIYKQML 274
Query: 506 EKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYD---LKPWHTTYEELI 557
+ S + L+ C K A H+ + E LKP TY LI
Sbjct: 275 S-QSLSPDLITYNTLIYGLCKKGDLKQA----HHLIDEMSMKGLKPDKITYTTLI 324
Score = 46.2 bits (108), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 92/446 (20%), Positives = 166/446 (37%), Gaps = 36/446 (8%)
Query: 150 FFNWVLEKESE--RLSSKTYNLMLRIVGVHGLVQEFWGLVDVM-KKKGYGVASHVRNKMT 206
FF W+ + R + +Y M+ + H ++ E L+ V+ +KG G AS V +
Sbjct: 3 FFTWLSSPANSTFRHTLHSYCTMIHFLCTHQMLSEAKSLIQVVVSRKGKGSASAVFAAI- 61
Query: 207 EKFEKEGLE-SDLEKLKGIFATGSIDNSIEKVASRICKVVRSDIWGDDVE--RQLRDLNV 263
FE +G + SDL G+ I + S D +E R R+
Sbjct: 62 --FETKGTQRSDLYVFSGL----------------ITAYLESGFLRDAIECYRLTREHKF 103
Query: 264 TFSNDLVKFVVDKLGDEPKKALI--FFRWAEESGFVKHDESSYNAMASVLGREDCIDRFW 321
D + V++ L L+ F+ E G+ +N + ++ I
Sbjct: 104 WVPFDTCRKVLEHLMKLKYFKLVWGFYEEILECGY-PASLYFFNILMHRFCKDGDIRIAQ 162
Query: 322 KVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKI 381
V D + G + + ++ + + E L +A +P V + L+ +
Sbjct: 163 SVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGL 222
Query: 382 VVSKQLD--MRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGF 439
++D LF +++ G V +++ GR+ +I K M
Sbjct: 223 CKESKIDDANELFDEML----VKGLVPNSVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSL 278
Query: 440 IASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAAD 499
+ + + L G +A+ +D M G + +LI G C GDLD A +
Sbjct: 279 SPDLITYNTLIYGLCKKGDLKQAHHLIDEMSMKGLKPDKITYTTLIDGCCKDGDLDTAFE 338
Query: 500 CFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKN 559
++M++ E T L++ C + +++DA K + + LKP TY +I
Sbjct: 339 HRKRMIQ-ENTRLDDVVYTALISGLCREGQSVDAEKMLREML-SVGLKPDARTYTMIINE 396
Query: 560 LLVQRGFKDALSLLCLMKDHGFPPFV 585
+ LL M+ G P V
Sbjct: 397 FCKKGDVWKGSKLLKEMQRDGHVPSV 422
>gi|413934891|gb|AFW69442.1| hypothetical protein ZEAMMB73_914225 [Zea mays]
Length = 507
Score = 56.2 bits (134), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 61/311 (19%), Positives = 115/311 (36%), Gaps = 60/311 (19%)
Query: 297 VKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAV 356
V + +Y + R ++ W VL EMR G ++ ++ + + M K+A
Sbjct: 154 VARNRRTYTLLLGAYARAGRLEDSWWVLGEMRRWGIRLDTAGYSMLVRLYRDNGMWKKAT 213
Query: 357 DLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDA------- 409
DL ++ V +LD++++S ++ F + G L DA
Sbjct: 214 DL------------------VMEMQEVGVELDVKIYSGLIDTFGKYGQ-LADARRMFDKM 254
Query: 410 ----------MLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKK 459
N++++ VG M + +M+E G + I RL GK
Sbjct: 255 RAEGVRPDISTWNALIQWHCRVGNMKRALRFFTSMQEEGMYPDPKIFVMIISRLGEQGKW 314
Query: 460 DEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCF------------------ 501
DE + D M G ++ L+ + G A DC
Sbjct: 315 DEIKKLFDGMNNRGFKESGAVYAILVDIYGQYGHFRDAQDCIAALRAENTQLLPRVFCVI 374
Query: 502 -----QKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEEL 556
Q+++E+EG ++ L+N + + R ++A V +++ + P TY L
Sbjct: 375 ANAYAQQLMEEEGFEPNLVMLNSLINAFGTAGRHLEALA-VFQHIKDSGMSPDVVTYTTL 433
Query: 557 IKNLLVQRGFK 567
+K + + F+
Sbjct: 434 MKTFMRAKKFE 444
>gi|255660944|gb|ACU25641.1| pentatricopeptide repeat-containing protein [Bouchea fluminensis]
Length = 481
Score = 56.2 bits (134), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 87/437 (19%), Positives = 163/437 (37%), Gaps = 82/437 (18%)
Query: 258 LRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCI 317
+R+L +F ++LV V+ + AL FFRW E S H+ ++ + +LGR +
Sbjct: 3 IRNLVPSFDHELVYNVLHG-AKNSEHALQFFRWVERSNLFXHNRETHLKIIEILGRASKL 61
Query: 318 DRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLY----EFAMACKNKPSVNC 373
+ +L +M KG E + + V ++ + + +V+E+V ++ E + K
Sbjct: 62 NHARCILLDMPKKGLEWDEDLWVLMIDSYGKAGIVQESVKMFQKMEELGVXRTIKSYDAL 121
Query: 374 CTFLLR--KIVVSKQLDMRLFSKVVRVFRENGNVLTDAML-------------------- 411
+LR + +++K+ ++ S+ + R NV+
Sbjct: 122 FKVILRRGRYMMAKRYFNKMLSEGIEPTRHTFNVMIWGFFLSGKVETSNRFFXDMXSREI 181
Query: 412 -------NSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANE 464
N+++ V +M E K M+ + + + S + D+A
Sbjct: 182 TPDVVTYNTMINGYYRVBKMEEXEKYFVEMKGRNIEPTVVTYTTLIKGYXSVDRVDBALX 241
Query: 465 FMDHMEASGSDVGDKMWVSLIKGHCVA--------------------------------- 491
+ M+ G + +L+ G C A
Sbjct: 242 LXEEMKXFGIKPNAITYSTLLPGLCDAEKMSEARSILKEMVXKYXAPTDNSIFMRLISGQ 301
Query: 492 ---GDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDL-- 546
GDLD AAD + M+ + AG+ +L+ YC + A K + + E D+
Sbjct: 302 CKVGDLDAAADVJKAMIRLSIPTEAGH-YGVLIEXYCKAGQYDKAVKLLDKVI-EKDIIS 359
Query: 547 KPWHT------TYEELIKNLLVQRGFKDALSLLCLMKDHGF--PPFVDPFIKYVSKSGTS 598
+P +T Y LI+ L A +L+ + G P ++ I+ S G+
Sbjct: 360 RPQNTLXMEPSAYNXLIEYLCNNGQTAKAETLVRZLMKLGVQDPTALNTLIRGHSXEGSP 419
Query: 599 DDAIAFLKGMTSKRFPS 615
D A LK M ++ S
Sbjct: 420 DSAFELLKIMLRRKVDS 436
>gi|255660786|gb|ACU25562.1| pentatricopeptide repeat-containing protein [Verbena canescens]
Length = 418
Score = 56.2 bits (134), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 63/289 (21%), Positives = 112/289 (38%), Gaps = 5/289 (1%)
Query: 269 LVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMR 328
L++ VV + G A +F E G + D ++ + + + + +
Sbjct: 35 LIQIVVSRKGKGSASA-VFAAILETKGTQRSDIYVFSGLITAYLESGFLRDAIECYRLTK 93
Query: 329 SKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLD 388
+ + +TC KVL + K YE ++ C S+ L+ V K+ +
Sbjct: 94 EHKFRVPFDTCRKVLEHLMKLKYFKLVWGFYEESLECGYPASLYFFNILMHSFV--KEGE 151
Query: 389 MRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSK 448
+RL V + + N+++ I +G + E ++ AM+ G S
Sbjct: 152 IRLAQSVFDAITKWSLRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMQASGVQPDVYTYSV 211
Query: 449 IAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKE 508
+ L K D+ANE D M +G + +LI GHC G +D A + +++M+ +
Sbjct: 212 LINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLS-Q 270
Query: 509 GTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELI 557
S + L+ C K A + + LKP TY LI
Sbjct: 271 SLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMK-GLKPDKITYTTLI 318
Score = 52.8 bits (125), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 101/433 (23%), Positives = 173/433 (39%), Gaps = 34/433 (7%)
Query: 161 RLSSKTYNLMLRIVGVHGLVQEFWGLVD-VMKKKGYGVASHVRNKMTEKFEKEGLESDLE 219
R + ++Y M+ + H ++ E L+ V+ +KG G AS V + E K SD+
Sbjct: 10 RHNLQSYCTMIHFLCTHQMLPEAKTLIQIVVSRKGKGSASAVFAAILET--KGTQRSDIY 67
Query: 220 KLKGIFA----TGSIDNSIEKVASRICKVVRSDIWGDDVERQLRDL-NVTFSNDLVKFVV 274
G+ +G + ++IE R+ K + + D + L L + + + F
Sbjct: 68 VFSGLITAYLESGFLRDAIE--CYRLTKEHKFRVPFDTCRKVLEHLMKLKYFKLVWGFYE 125
Query: 275 DKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEM 334
+ L +L FF S FVK E SV D I + W + + S +
Sbjct: 126 ESLECGYPASLYFFNILMHS-FVK--EGEIRLAQSVF---DAITK-WSLRPSVVS--FNT 176
Query: 335 EMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLD--MRLF 392
M +K LG E +K A+ A +P V + L+ + ++D LF
Sbjct: 177 LMNGYIK-LGDLDEGFRLKNAMQ------ASGVQPDVYTYSVLINGLCKESKMDDANELF 229
Query: 393 SKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFR 452
+++ +NG V +++ GR+ +I K M + + +
Sbjct: 230 DEML----DNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYG 285
Query: 453 LSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSH 512
L G +A + +D M G + +LI G+C GDL+ A + +KM+ KE
Sbjct: 286 LCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGNCKEGDLETAFEYRKKMI-KENIRL 344
Query: 513 AGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSL 572
A L++ C + R++DA K + + LKP TY +I + L
Sbjct: 345 DDVAYTALISGLCQEGRSVDAEKMLREML-SVGLKPEIGTYTMIINEFCKKGDVWTGSKL 403
Query: 573 LCLMKDHGFPPFV 585
L M+ G+ P V
Sbjct: 404 LKEMQRDGYMPSV 416
>gi|255551050|ref|XP_002516573.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223544393|gb|EEF45914.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 396
Score = 56.2 bits (134), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 55/254 (21%), Positives = 111/254 (43%), Gaps = 6/254 (2%)
Query: 300 DESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLY 359
D +YN +A+ R + + +++ EM++ G + TC V+ + + +KEA+
Sbjct: 9 DVVTYNTIATAYVRNEETNLAEEMISEMQNTGVQPNERTCGTVISGYCKEGRIKEALRFV 68
Query: 360 EFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAM-LNSVLKAL 418
P++ L++ V +D +V+++ E NV D + ++++ A
Sbjct: 69 HRMKELGVHPNLVVFNSLIKGFV--DIMDRNGVDEVLKLMEE-FNVKPDVITFSTIMNAW 125
Query: 419 ISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGD 478
G M +C +I M + G + S +A A + ++A + + M SG
Sbjct: 126 SKAGYMNKCREIFDDMMKAGIQPDGHAYSILAKGYVRAQEPEKAEQLLTTMMESGFHPNV 185
Query: 479 KMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVH 538
++ ++I G C +D A F KM E G S + L+ + + A + +
Sbjct: 186 VIFTTVISGWCSTDRMDCAIRVFDKMCEY-GISPNLKTFETLIGGFSEAKQPWKA-EDIL 243
Query: 539 NCVREYDLKPWHTT 552
+REY+++P +T
Sbjct: 244 QIMREYNVEPKKST 257
>gi|125524596|gb|EAY72710.1| hypothetical protein OsI_00576 [Oryza sativa Indica Group]
Length = 1121
Score = 56.2 bits (134), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 54/215 (25%), Positives = 97/215 (45%), Gaps = 9/215 (4%)
Query: 325 DEMRSKGYEME--METC-VKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKI 381
D+M +G + + TC ++V R + V EA+ L+E ++ + KP + L
Sbjct: 850 DDMVRRGCRLNSFVYTCLIRVHCRAGD---VDEAMQLFEEMISIRLKPYDATYSHLTAGC 906
Query: 382 VVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIA 441
+Q M+ S+ + G+V N +L+AL G + + N++L A+ + GF+
Sbjct: 907 F--RQGRMKEGSEYMDKMLHQGSVPDIGTCNDMLEALCDSGHVSKANELLTALMDKGFVP 964
Query: 442 SSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCF 501
N ++ G + ME G ++G ++ SLI+ C GDL K A+ F
Sbjct: 965 DQNTYLRMTNGYGKVGDAQGIIKIYHEMEHRGLNIGVDVFSSLIRALCKCGDL-KEAEKF 1023
Query: 502 QKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKF 536
++E++ + DLL++ C K A F
Sbjct: 1024 LAILERKLLAPTSEIYDLLISGNCEKGNTKKALWF 1058
Score = 45.1 bits (105), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 67/349 (19%), Positives = 126/349 (36%), Gaps = 40/349 (11%)
Query: 281 PKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCV 340
P++AL R+ + G V ++NA+ R W+V + M K T
Sbjct: 702 PEEALEACRYLAQRGVVP-SLPAFNAVLHAAQRTGRFGVAWEVFELMTLKRVYANQSTVE 760
Query: 341 KVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFR 400
V+G S + L E K P V V L +++F +
Sbjct: 761 LVIGVLSREGALARMAALVERIHGKKCAPGV----------VAHVALTLKIFEE------ 804
Query: 401 ENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKD 460
GR + +L+ M + + + S I AG
Sbjct: 805 ---------------------GRTEQGILLLRRMLQRNMVFDNIAYSLIVHAHCQAGDLK 843
Query: 461 EANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLL 520
A E D M G + ++ LI+ HC AGD+D+A F++M+ + L
Sbjct: 844 SACEQRDDMVRRGCRLNSFVYTCLIRVHCRAGDVDEAMQLFEEMISIRLKPYDATYSHLT 903
Query: 521 VNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHG 580
+ + R + +++ + + + P T ++++ L A LL + D G
Sbjct: 904 AGCF-RQGRMKEGSEYMDKMLHQGSV-PDIGTCNDMLEALCDSGHVSKANELLTALMDKG 961
Query: 581 FPPFVDPFIKYVSKSGTSDDAIAFLKGMTSKRFPSMSVVLCLFAAFFQA 629
F P + +++ + G DA +K +++ + +F++ +A
Sbjct: 962 FVPDQNTYLRMTNGYGKVGDAQGIIKIYHEMEHRGLNIGVDVFSSLIRA 1010
>gi|255660778|gb|ACU25558.1| pentatricopeptide repeat-containing protein [Verbena bracteata]
Length = 418
Score = 56.2 bits (134), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 63/289 (21%), Positives = 112/289 (38%), Gaps = 5/289 (1%)
Query: 269 LVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMR 328
L++ VV + G A +F E G + D ++ + + + + +
Sbjct: 35 LIQIVVSRKGKGSASA-VFAAILETKGTQRSDIYVFSGLITAYLESGFLRDAIECYRLTK 93
Query: 329 SKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLD 388
+ + +TC KVL + K YE ++ C S+ L+ V K+ +
Sbjct: 94 EHKFRVPFDTCRKVLEHLMKLKYFKLVWGFYEESLECGYPASLYFFNILMHSFV--KEGE 151
Query: 389 MRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSK 448
+RL V + + N+++ I +G + E ++ AM+ G S
Sbjct: 152 IRLAQSVFDAITKWSLRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMQASGVQPDVYTYSV 211
Query: 449 IAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKE 508
+ L K D+ANE D M +G + +LI GHC G +D A + +++M+ +
Sbjct: 212 LINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLS-Q 270
Query: 509 GTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELI 557
S + L+ C K A + + LKP TY LI
Sbjct: 271 SLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMK-GLKPDKITYTTLI 318
Score = 52.4 bits (124), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 100/433 (23%), Positives = 173/433 (39%), Gaps = 34/433 (7%)
Query: 161 RLSSKTYNLMLRIVGVHGLVQEFWGLVD-VMKKKGYGVASHVRNKMTEKFEKEGLESDLE 219
R + ++Y M+ + H ++ E L+ V+ +KG G AS V + E K SD+
Sbjct: 10 RHTLQSYCTMIHFLCTHQMLPEAKTLIQIVVSRKGKGSASAVFAAILET--KGTQRSDIY 67
Query: 220 KLKGIFA----TGSIDNSIEKVASRICKVVRSDIWGDDVERQLRDL-NVTFSNDLVKFVV 274
G+ +G + ++IE R+ K + + D + L L + + + F
Sbjct: 68 VFSGLITAYLESGFLRDAIE--CYRLTKEHKFRVPFDTCRKVLEHLMKLKYFKLVWGFYE 125
Query: 275 DKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEM 334
+ L +L FF S FVK E SV D I + W + + S +
Sbjct: 126 ESLECGYPASLYFFNILMHS-FVK--EGEIRLAQSVF---DAITK-WSLRPSVVS--FNT 176
Query: 335 EMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLD--MRLF 392
M +K LG E +K A+ A +P V + L+ + ++D LF
Sbjct: 177 LMNGYIK-LGDLDEGFRLKNAMQ------ASGVQPDVYTYSVLINGLCKESKMDDANELF 229
Query: 393 SKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFR 452
+++ +NG V +++ GR+ +I K M + + +
Sbjct: 230 DEML----DNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYG 285
Query: 453 LSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSH 512
L G +A + +D M G + +LI G+C GDL+ A + ++M+ KE
Sbjct: 286 LCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGNCKEGDLETAFEYRKRMI-KENIRL 344
Query: 513 AGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSL 572
A L++ C + R++DA K + + LKP TY +I + L
Sbjct: 345 DDVAYTALISGLCQEGRSVDAEKMLREML-SVGLKPEIGTYTMIINEFCKKGDVWTGSKL 403
Query: 573 LCLMKDHGFPPFV 585
L M+ G+ P V
Sbjct: 404 LKEMQRDGYMPSV 416
>gi|22135795|gb|AAM91084.1| AT4g28010/T13J8_120 [Arabidopsis thaliana]
Length = 704
Score = 56.2 bits (134), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 74/160 (46%), Gaps = 5/160 (3%)
Query: 456 AGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGY 515
AGK DEA F+ M+ G + ++ SLI+G C G+LD+ F +++E+ G S
Sbjct: 225 AGKMDEAMGFLKEMKFMGLEADLVVYTSLIRGFCDCGELDRGKALFDEVLER-GDSPCAI 283
Query: 516 AIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCL 575
+ L+ +C + +A + + E ++P TY LI L K+AL L L
Sbjct: 284 TYNTLIRGFCKLGQLKEASEIFEFMI-ERGVRPNVYTYTGLIDGLCGVGKTKEALQPLNL 342
Query: 576 MKDHGFPPFVDPF---IKYVSKSGTSDDAIAFLKGMTSKR 612
M + P + I + K G DA+ ++ M +R
Sbjct: 343 MIEKDEEPNAVTYNIIINKLCKDGLVADAVEIVELMKKRR 382
Score = 39.7 bits (91), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 91/415 (21%), Positives = 166/415 (40%), Gaps = 65/415 (15%)
Query: 145 DEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRNK 204
D + F+ VLE+ + + TYN ++R G ++E + + M ++G +
Sbjct: 264 DRGKALFDEVLER-GDSPCAITYNTLIRGFCKLGQLKEASEIFEFMIERGVRPNVYTYTG 322
Query: 205 MTEKFEKEG-LESDLEKLKGIFATGSIDNSIEK--VASRICKVVRSDIWGDDVE------ 255
+ + G + L+ L + N++ + +++CK + D VE
Sbjct: 323 LIDGLCGVGKTKEALQPLNLMIEKDEEPNAVTYNIIINKLCK---DGLVADAVEIVELMK 379
Query: 256 -RQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGRE 314
R+ R N+T+ N L+ + K GD + + + + ++S + D SYNA+ L +E
Sbjct: 380 KRRTRPDNITY-NILLGGLCAK-GDLDEASKLLYLMLKDSSYTDPDVISYNALIHGLCKE 437
Query: 315 DCIDRFWKVLDEMRSK----------------------GYEMEM-------------ETC 339
+ + + + D + K ME+ +T
Sbjct: 438 NRLHQALDIYDLLVEKLGAGDRVTTNILLNSTLKAGDVNKAMELWKQISDSKIVRNSDTY 497
Query: 340 VKVLGRFSERNMVKEAVDLYEFAMACKNKPSV---NCCTFLLRKIVVSKQLDM--RLFSK 394
++ F + M+ A L + +PSV NC LL + LD RLF +
Sbjct: 498 TAMIDGFCKTGMLNVAKGLLCKMRVSELQPSVFDYNC---LLSSLCKEGSLDQAWRLFEE 554
Query: 395 VVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLS 454
+ R V + M++ LKA G + +L M G SK+ R
Sbjct: 555 MQRDNNFPDVVSFNIMIDGSLKA----GDIKSAESLLVGMSRAGLSPDLFTYSKLINRFL 610
Query: 455 SAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVA-GDLDKAADCFQKMVEKE 508
G DEA F D M SG + + S++K +C++ G+ DK + +K+V+K+
Sbjct: 611 KLGYLDEAISFFDKMVDSGFEPDAHICDSVLK-YCISQGETDKLTELVKKLVDKD 664
>gi|356499327|ref|XP_003518493.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
mitochondrial-like [Glycine max]
Length = 725
Score = 56.2 bits (134), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 72/324 (22%), Positives = 138/324 (42%), Gaps = 16/324 (4%)
Query: 300 DESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLY 359
D ++N M L ++ + ++L+EM +K +E + T ++ F ++ ++EA ++
Sbjct: 376 DAYTFNIMIDGLVKKGYLVSALELLNEMVAKRFEPNVITYTILINGFCKQGRLEEAAEIV 435
Query: 360 EFAMACK----NKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVL 415
+M+ K N NC L K ++ ++LF ++ G NS++
Sbjct: 436 N-SMSAKGLSLNTVGYNCLICALCKDGNIEE-ALQLFGEM----SGKGCKPDIYTFNSLI 489
Query: 416 KALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSD 475
L +M E + M G IA++ + + +A + +D M G
Sbjct: 490 NGLCKNHKMEEALSLYHDMFLEGVIANTVTYNTLVHAFLMRDSIQQAFKLVDEMLFRGCP 549
Query: 476 VGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACK 535
+ + + LIK C G ++K F++M+ K G + ++L++ C + DA K
Sbjct: 550 LDNITYNGLIKALCKTGAVEKGLGLFEEMLGK-GIFPTIISCNILISGLCRTGKVNDALK 608
Query: 536 FVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPFIKYVSK- 594
F+ + + L P TY LI L ++A +L ++ G P + +S+
Sbjct: 609 FLQDMIHR-GLTPDIVTYNSLINGLCKMGHVQEASNLFNKLQSEGIRPDAITYNTLISRH 667
Query: 595 --SGTSDDAIAFL-KGMTSKRFPS 615
G +DA L KG+ S P+
Sbjct: 668 CHEGMFNDACLLLYKGVDSGFIPN 691
Score = 44.3 bits (103), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 42/203 (20%), Positives = 81/203 (39%), Gaps = 8/203 (3%)
Query: 412 NSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEA 471
N V+ L GR+ E K+L M GF + + L G+ DEA ++ +
Sbjct: 279 NDVIHGLCRAGRIHEAAKLLDRMLLRGFSTDALTYGYLMHGLCRMGQVDEARALLNKIPN 338
Query: 472 SGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAI 531
+ ++ +LI G+ +G ++A D + G Y +++++ K +
Sbjct: 339 PNT----VLYNTLISGYVASGRFEEAKDLLYNNMVIAGYEPDAYTFNIMIDGLVKKGYLV 394
Query: 532 DACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFV---DPF 588
A + ++ V + +P TY LI Q ++A ++ M G +
Sbjct: 395 SALELLNEMVAK-RFEPNVITYTILINGFCKQGRLEEAAEIVNSMSAKGLSLNTVGYNCL 453
Query: 589 IKYVSKSGTSDDAIAFLKGMTSK 611
I + K G ++A+ M+ K
Sbjct: 454 ICALCKDGNIEEALQLFGEMSGK 476
>gi|255660830|gb|ACU25584.1| pentatricopeptide repeat-containing protein [Xeroaloysia
ovatifolia]
Length = 418
Score = 56.2 bits (134), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 65/292 (22%), Positives = 110/292 (37%), Gaps = 5/292 (1%)
Query: 266 SNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLD 325
+ L++ VV + G A +F E G + D ++ + + + +
Sbjct: 32 AKSLIQVVVSRKGKGSASA-VFAAILETKGTQRSDIYVFSGLITAYLESGFLRDAIECYR 90
Query: 326 EMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSK 385
R + + +TC KVL + K YE + C S+ L+ K K
Sbjct: 91 LTREHKFWVPFDTCRKVLEHLMKLKYFKLVWGFYEEILECGYPASLYFFNILMHKFC--K 148
Query: 386 QLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNM 445
D+R+ V + G + N+++ I +G + E ++ AM G
Sbjct: 149 DGDIRVAQSVFNAITKWGLRPSVVSFNTLMNGYIRLGDLDEGFRLKTAMHASGVQPDVYT 208
Query: 446 KSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMV 505
S + L K D+ANE D M G + +LI GHC G +D A + +++M+
Sbjct: 209 YSVLINGLCKESKMDDANELFDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQML 268
Query: 506 EKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELI 557
+ S + L+ C K A + + LKP TY LI
Sbjct: 269 S-QSLSPDLITYNTLIYGLCRKGDLKQARDLIDEMSMK-GLKPDKITYTTLI 318
Score = 41.6 bits (96), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 48/221 (21%), Positives = 87/221 (39%), Gaps = 10/221 (4%)
Query: 368 KPSVNCCTFLLRKIVVSKQLD--MRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMG 425
+P V + L+ + ++D LF +++ + G V +++ GR+
Sbjct: 203 QPDVYTYSVLINGLCKESKMDDANELFDEML----DKGLVPNGVTFTTLIDGHCKNGRVD 258
Query: 426 ECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLI 485
+I K M + + + L G +A + +D M G + +LI
Sbjct: 259 LAMEIYKQMLSQSLSPDLITYNTLIYGLCRKGDLKQARDLIDEMSMKGLKPDKITYTTLI 318
Query: 486 KGHCVAGDLDKAADCFQKMVEKE-GTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREY 544
G C GDL+ A + ++M+++ GY L++ C + R +DA K + +
Sbjct: 319 DGXCKEGDLETAFEHRKRMIQENIQLDDVGYTA--LISGLCQEGRYLDAEKVLREML-SV 375
Query: 545 DLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFV 585
LKP TY +I + LL M+ G P V
Sbjct: 376 GLKPDTITYTMIINEFCKKGDVWTGSKLLKEMQRDGQMPSV 416
>gi|296081018|emb|CBI18522.3| unnamed protein product [Vitis vinifera]
Length = 808
Score = 56.2 bits (134), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 51/215 (23%), Positives = 88/215 (40%), Gaps = 11/215 (5%)
Query: 431 LKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCV 490
L+ M++ G + + I GK DEA +E G +V + M+V+LI G C
Sbjct: 216 LEKMKKDGLKPNLVTYTAIMLGFCKKGKLDEAYTLFKMVENLGIEVDEFMYVTLIDGFCT 275
Query: 491 AGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWH 550
GD+D + M EK G S + + ++N C R +A + +
Sbjct: 276 RGDIDCVFGLLEDM-EKRGISPSIVTYNSIINGLCKAGRTSEADEVSKGIAGD------A 328
Query: 551 TTYEELIKNLLVQRGFKDALSLLCLMKDHGFP---PFVDPFIKYVSKSGTSDDAIAFLKG 607
T+ L+ + + K L +++ G + IK + G +DA AF KG
Sbjct: 329 VTFSTLLHGYIEEENVKGILETKRRLEEDGVCIDLVMCNTIIKALLMVGALEDAYAFYKG 388
Query: 608 MTSKRFPSMSVVLC-LFAAFFQARRHSEAQDLLSK 641
M+ + SV C + + + R EA ++ +
Sbjct: 389 MSGMDLVADSVTYCTMINGYCRVSRIEEALEIFDE 423
Score = 42.0 bits (97), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 50/245 (20%), Positives = 99/245 (40%), Gaps = 21/245 (8%)
Query: 383 VSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIAS 442
+ K LD+ F K + G L NSV+ L G + + ++ ++E+ + S
Sbjct: 510 LDKALDLCAFVK------KKGIALNIYAYNSVINGLCRQGCLVQAFRLFDSLEKIDLVPS 563
Query: 443 SNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQ 502
+ + L G +A + + M G + +++ SLI G+C G++++A +
Sbjct: 564 EITYATLIDSLCKEGCLLDAKQLFEKMVIKGFNPNVRVYNSLIDGYCKFGNMEEALNLLI 623
Query: 503 KMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLV 562
+ + + + L+N YC K A F ++ D+ P + L++ L
Sbjct: 624 DL-KARCIKPDEFTVSALINGYCHKGDMEGALGFFFE-FKKKDILPDFLGFMYLVRGLCA 681
Query: 563 Q------RGF-------KDALSLLCLMKDHGFPPFVDPFIKYVSKSGTSDDAIAFLKGMT 609
+ RG + L L+ + V+ FI + + G+ +A+ L +
Sbjct: 682 KGRMEEARGILREMLQTRSVLELINRVDTEIETESVESFIISLCEQGSIQEAVTVLNEVG 741
Query: 610 SKRFP 614
S FP
Sbjct: 742 SIFFP 746
>gi|413934892|gb|AFW69443.1| hypothetical protein ZEAMMB73_914225 [Zea mays]
Length = 561
Score = 56.2 bits (134), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 61/311 (19%), Positives = 115/311 (36%), Gaps = 60/311 (19%)
Query: 297 VKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAV 356
V + +Y + R ++ W VL EMR G ++ ++ + + M K+A
Sbjct: 154 VARNRRTYTLLLGAYARAGRLEDSWWVLGEMRRWGIRLDTAGYSMLVRLYRDNGMWKKAT 213
Query: 357 DLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDA------- 409
DL ++ V +LD++++S ++ F + G L DA
Sbjct: 214 DL------------------VMEMQEVGVELDVKIYSGLIDTFGKYGQ-LADARRMFDKM 254
Query: 410 ----------MLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKK 459
N++++ VG M + +M+E G + I RL GK
Sbjct: 255 RAEGVRPDISTWNALIQWHCRVGNMKRALRFFTSMQEEGMYPDPKIFVMIISRLGEQGKW 314
Query: 460 DEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCF------------------ 501
DE + D M G ++ L+ + G A DC
Sbjct: 315 DEIKKLFDGMNNRGFKESGAVYAILVDIYGQYGHFRDAQDCIAALRAENTQLLPRVFCVI 374
Query: 502 -----QKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEEL 556
Q+++E+EG ++ L+N + + R ++A V +++ + P TY L
Sbjct: 375 ANAYAQQLMEEEGFEPNLVMLNSLINAFGTAGRHLEALA-VFQHIKDSGMSPDVVTYTTL 433
Query: 557 IKNLLVQRGFK 567
+K + + F+
Sbjct: 434 MKTFMRAKKFE 444
>gi|218196744|gb|EEC79171.1| hypothetical protein OsI_19856 [Oryza sativa Indica Group]
Length = 633
Score = 56.2 bits (134), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 59/287 (20%), Positives = 113/287 (39%), Gaps = 5/287 (1%)
Query: 298 KHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSER-NMVKEAV 356
+ D + + +A+ L VLD M + G + C ++G ++ R A
Sbjct: 179 RPDAACFTTVAAALSSASRPGAALAVLDAMAADGVAPDAAACTVLVGVYACRLRRFDAAY 238
Query: 357 DLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLK 416
++ + +A P V + L+ + + Q+ L V+ + E G ++
Sbjct: 239 EVVRWMVANGVAPDVVTYSTLISGLCSAGQVAEAL--GVLDLMLEEGCQPNAHTYTPIVH 296
Query: 417 ALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDV 476
A + GR+ E ++L M GF S+ + + L G +E + ++ A G
Sbjct: 297 AYCTGGRIHEAKRLLNTMIASGFAPSTATYNVLVEALCKVGAFEEVDALLEESTAKGWTP 356
Query: 477 GDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKF 536
+ S + G C AG +DK+ KM+ G + +++L++ C + A A K
Sbjct: 357 DVITYSSYMDGLCKAGRIDKSFALVDKMLSN-GLQPSEVTLNILLDGVCRSSTAWAA-KR 414
Query: 537 VHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPP 583
+ C E Y +++ L +R + + L M G P
Sbjct: 415 LLECSAELGWDANVVNYNTVMRRLCDERRWLSVVKLFTDMAKKGIAP 461
>gi|147859909|emb|CAN83144.1| hypothetical protein VITISV_040783 [Vitis vinifera]
Length = 724
Score = 56.2 bits (134), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 84/398 (21%), Positives = 154/398 (38%), Gaps = 45/398 (11%)
Query: 279 DEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDR--FWKVLDEMRSKGYEMEM 336
D+ +KAL G+ D +Y+ + L R + D K+ E+ S E++
Sbjct: 269 DDLEKALNLMSRMRRDGY-PSDFVNYSFIIQSLTRTNKSDSSMLQKIYAEIESDKIELDG 327
Query: 337 ETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVV 396
+ ++ F++ V A+ AM N S T + + +
Sbjct: 328 QLLNDIIVGFAKSGDVNRAMSF--LAMVQGNGLSPKTATLVAVITALGNAGRTEEAEAIF 385
Query: 397 RVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSA 456
+E G + N++LK + G + + I+ ME GF + S + ++A
Sbjct: 386 EELKEGGLMPRTRAYNALLKGYVKTGSLKDAESIVSEMERSGFSPDEHTYSLLIDAYANA 445
Query: 457 GKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYA 516
G+ + A + MEASG ++ ++ + G K+ ++M G S +
Sbjct: 446 GRWESARIVLKEMEASGVRPNSYVFSRILASYRDRGKWQKSFQVLREM-RNSGVSPDRHF 504
Query: 517 IDLLVNTY-------------------------CSKNRAIDA-CKFVHN--------CVR 542
+++++T+ + N ID CK H+ ++
Sbjct: 505 YNVMIDTFGKCNCLDHALATFDRMRMEGVQPDAVTWNTLIDCHCKSGHHNKAEELFEAMQ 564
Query: 543 EYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPFIKYVSKSGTSDDAI 602
E P TTY +I + Q ++D +LL M+ G V + Y + G S+ AI
Sbjct: 565 ESGCSPCTTTYNIMINSFGEQERWEDVKTLLGKMQSQGLLANV---VTYTTL-GLSEQAI 620
Query: 603 AFLKGMTSKRF-PSMSVVLCLFAAFFQARRHSEAQDLL 639
+ M + PS+ V+ L AF + RR +EA +L
Sbjct: 621 NAFRVMRADGLKPSVLVLNSLINAFGEDRRDAEAFSVL 658
Score = 53.9 bits (128), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 70/345 (20%), Positives = 133/345 (38%), Gaps = 10/345 (2%)
Query: 303 SYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFA 362
+YNA+ R D +++ ++ MR GY + ++ + N ++ +A
Sbjct: 257 TYNALIGACARNDDLEKALNLMSRMRRDGYPSDFVNYSFIIQSLTRTNKSDSSMLQKIYA 316
Query: 363 MACKNKPSVNCCTFLLRKIVV--SKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALIS 420
+K ++ LL I+V +K D+ + + + NG A L +V+ AL +
Sbjct: 317 EIESDKIELDGQ--LLNDIIVGFAKSGDVNRAMSFLAMVQGNGLSPKTATLVAVITALGN 374
Query: 421 VGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKM 480
GR E I + ++EGG + + + + G +A + ME SG +
Sbjct: 375 AGRTEEAEAIFEELKEGGLMPRTRAYNALLKGYVKTGSLKDAESIVSEMERSGFSPDEHT 434
Query: 481 WVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNC 540
+ LI + AG + A ++M E G Y ++ +Y + + + + +
Sbjct: 435 YSLLIDAYANAGRWESARIVLKEM-EASGVRPNSYVFSRILASYRDRGKWQKSFQVLRE- 492
Query: 541 VREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFV---DPFIKYVSKSGT 597
+R + P Y +I AL+ M+ G P + I KSG
Sbjct: 493 MRNSGVSPDRHFYNVMIDTFGKCNCLDHALATFDRMRMEGVQPDAVTWNTLIDCHCKSGH 552
Query: 598 SDDAIAFLKGMT-SKRFPSMSVVLCLFAAFFQARRHSEAQDLLSK 641
+ A + M S P + + +F + R + + LL K
Sbjct: 553 HNKAEELFEAMQESGCSPCTTTYNIMINSFGEQERWEDVKTLLGK 597
Score = 40.4 bits (93), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 82/390 (21%), Positives = 144/390 (36%), Gaps = 73/390 (18%)
Query: 84 MICSYSSEPAMEQKESDFTVVSDIFYKFSDVNDISKQLE---------LSGVVFTHEMVL 134
M+ +E ++ E D +++DI F+ D+++ + LS T V+
Sbjct: 310 MLQKIYAEIESDKIELDGQLLNDIIVGFAKSGDVNRAMSFLAMVQGNGLSPKTATLVAVI 369
Query: 135 KVLKNLESSPDEARRFFNWVLEKESERLS-SKTYNLMLRIVGVHGLVQEFWGLVDVMKKK 193
L N + +EA F + KE + ++ YN +L+ G +++ +V M++
Sbjct: 370 TALGNAGRT-EEAEAIFEEL--KEGGLMPRTRAYNALLKGYVKTGSLKDAESIVSEMERS 426
Query: 194 GYGVASHVRNKMTEKFEKEG-LESDLEKLKGIFATGSIDNSIEKVASRICKVVRSDIWGD 252
G+ H + + + + G ES LK + A+G NS V SRI R
Sbjct: 427 GFSPDEHTYSLLIDAYANAGRWESARIVLKEMEASGVRPNSY--VFSRILASYR------ 478
Query: 253 DVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLG 312
D K+ +K+ R SG V D YN M G
Sbjct: 479 ---------------DRGKW---------QKSFQVLREMRNSG-VSPDRHFYNVMIDTFG 513
Query: 313 REDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVN 372
+ +C+D D MR +G + + T ++ + +A +L+E P
Sbjct: 514 KCNCLDHALATFDRMRMEGVQPDAVTWNTLIDCHCKSGHHNKAEELFEAMQESGCSPCTT 573
Query: 373 CCTFLLR-----------KIVVSKQLDMRLFSKVV---------------RVFRENGNVL 406
++ K ++ K L + VV RV R +G
Sbjct: 574 TYNIMINSFGEQERWEDVKTLLGKMQSQGLLANVVTYTTLGLSEQAINAFRVMRADGLKP 633
Query: 407 TDAMLNSVLKALISVGRMGECNKILKAMEE 436
+ +LNS++ A R E +L+ M+E
Sbjct: 634 SVLVLNSLINAFGEDRRDAEAFSVLQYMKE 663
>gi|357485461|ref|XP_003613018.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355514353|gb|AES95976.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 894
Score = 56.2 bits (134), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 84/366 (22%), Positives = 147/366 (40%), Gaps = 28/366 (7%)
Query: 281 PKKALIFFRWAE-ESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETC 339
P AL FF+W + GF+ H SY + +L R + F + + +R+ +++C
Sbjct: 83 PLTALNFFKWIHYQHGFI-HTVHSYQPLLFILVR----NGFLRAAENVRNS----MIKSC 133
Query: 340 VKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVF 399
V E V + +EF+++ S N +L + + +L+ LF ++
Sbjct: 134 VSS----HEARFVLNLLTHHEFSLSVT---SYNRLFMVLSRFGLIDELNC-LFKDMLNDG 185
Query: 400 RENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKK 459
E + + M+N+ K +G + + + GF S + + +
Sbjct: 186 VEPNLISFNTMVNAHCK----IGNVVVAKAYFCGLMKFGFCCDSFTYTSLILGYCKIHEL 241
Query: 460 DEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDL 519
+A + + M G + + +LI G C G +D+A + F +M E +G +
Sbjct: 242 GDAYKVFEIMPQEGCLRNEVSYTNLIHGFCEVGKIDEALELFFQMKE-DGCFPDVPTYTV 300
Query: 520 LVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDH 579
LV +C + +A KF V E ++P TY LI + + +L M +
Sbjct: 301 LVAAFCEVGKETEALKFFEEMV-ENGIEPNVYTYTVLIDYFCKVGKMDEGMEMLSTMLEK 359
Query: 580 GFPPFVDPF---IKYVSKSGTSDDAIAFLKGM-TSKRFPSMSVVLCLFAAFFQARRHSEA 635
G V PF I K G +DAI L M +K P+ L F + + A
Sbjct: 360 GLVSSVVPFNALIDGYCKRGMMEDAICVLDSMKLNKVCPNSRTYNELICGFCRKKSMDRA 419
Query: 636 QDLLSK 641
LL+K
Sbjct: 420 MALLNK 425
Score = 55.8 bits (133), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 62/286 (21%), Positives = 114/286 (39%), Gaps = 12/286 (4%)
Query: 302 SSYNAMASVLGREDCIDRFWKVLDEMRSKGYE---MEMETCVKVLGRFSERNMVKEA-VD 357
+SYN + VL R ID + +M + G E + T V + + K
Sbjct: 156 TSYNRLFMVLSRFGLIDELNCLFKDMLNDGVEPNLISFNTMVNAHCKIGNVVVAKAYFCG 215
Query: 358 LYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKA 417
L +F C S + +L + + D KV + + G + + +++
Sbjct: 216 LMKFGFCCD---SFTYTSLILGYCKIHELGDAY---KVFEIMPQEGCLRNEVSYTNLIHG 269
Query: 418 LISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVG 477
VG++ E ++ M+E G + + GK+ EA +F + M +G +
Sbjct: 270 FCEVGKIDEALELFFQMKEDGCFPDVPTYTVLVAAFCEVGKETEALKFFEEMVENGIEPN 329
Query: 478 DKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFV 537
+ LI C G +D+ + M+EK G + + L++ YC + DA V
Sbjct: 330 VYTYTVLIDYFCKVGKMDEGMEMLSTMLEK-GLVSSVVPFNALIDGYCKRGMMEDAI-CV 387
Query: 538 HNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPP 583
+ ++ + P TY ELI ++ A++LL M ++ P
Sbjct: 388 LDSMKLNKVCPNSRTYNELICGFCRKKSMDRAMALLNKMYENKLSP 433
Score = 53.1 bits (126), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 70/322 (21%), Positives = 138/322 (42%), Gaps = 18/322 (5%)
Query: 283 KALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKV 342
+AL FF E+G ++ + +Y + + +D ++L M KG + +
Sbjct: 313 EALKFFEEMVENG-IEPNVYTYTVLIDYFCKVGKMDEGMEMLSTMLEKGLVSSVVPFNAL 371
Query: 343 LGRFSERNMVKEAV---DLYEFAMACKNKPSVN--CCTFLLRKIVVSKQLDMRLFSKVVR 397
+ + +R M+++A+ D + C N + N C F +K S M L +K+
Sbjct: 372 IDGYCKRGMMEDAICVLDSMKLNKVCPNSRTYNELICGFCRKK---SMDRAMALLNKMYE 428
Query: 398 VFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAG 457
+ + N++T N+++ L + ++ M + GF+ L G
Sbjct: 429 N-KLSPNLVT---YNTLIHGLCKARVVDSAWRLHHLMIKDGFVPDQRTFCAFIDCLCKMG 484
Query: 458 KKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAI 517
K ++A++ + ++ ++ + ++ +LI G+C A A F++M+ EG
Sbjct: 485 KVEQAHQVFESLKEKHAEANEFLYTALIDGYCKAEKFSDAHLLFKRML-FEGCFPNSITF 543
Query: 518 DLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMK 577
++L++ + + DA V + + ++D KP TY LI+ +L + F A L M
Sbjct: 544 NVLLDGLRKEGKVEDAMSLV-DVMGKFDAKPTVHTYTILIEEILRESDFDRANMFLDQMI 602
Query: 578 DHGFPPFV---DPFIKYVSKSG 596
G P V FIK + G
Sbjct: 603 SSGCQPNVVTYTAFIKAYCRQG 624
Score = 46.2 bits (108), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 59/277 (21%), Positives = 112/277 (40%), Gaps = 18/277 (6%)
Query: 303 SYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFA 362
+YN + L + +D W++ M G+ + T + + V++A ++E
Sbjct: 437 TYNTLIHGLCKARVVDSAWRLHHLMIKDGFVPDQRTFCAFIDCLCKMGKVEQAHQVFE-- 494
Query: 363 MACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRE---NGNVLTDAMLNSVLKALI 419
+ K K + L ++ FS +F+ G N +L L
Sbjct: 495 -SLKEKHAE--ANEFLYTALIDGYCKAEKFSDAHLLFKRMLFEGCFPNSITFNVLLDGLR 551
Query: 420 SVGRMGECNKILKAMEEGGFIASSNMKSKIAF--RLSSAGKKDEANEFMDHMEASGSDVG 477
G++ + ++ M G F A + + + D AN F+D M +SG
Sbjct: 552 KEGKVEDAMSLVDVM--GKFDAKPTVHTYTILIEEILRESDFDRANMFLDQMISSGCQPN 609
Query: 478 DKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFV 537
+ + IK +C G L +A + K +++EG + D+LVN Y + A +
Sbjct: 610 VVTYTAFIKAYCRQGRLLEAEEMVVK-IKEEGILLDSFIYDVLVNAYGCIGQLDSAFGVL 668
Query: 538 HNCVREYD--LKPWHTTYEELIKNLLVQRGFKDALSL 572
+R +D +P TY L+K+L+ ++ K+ + L
Sbjct: 669 ---IRMFDTGCEPSRQTYSILLKHLIFEKYNKEGMGL 702
>gi|255544732|ref|XP_002513427.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223547335|gb|EEF48830.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 567
Score = 56.2 bits (134), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 80/390 (20%), Positives = 165/390 (42%), Gaps = 22/390 (5%)
Query: 262 NVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFW 321
N N LVK + + K+L F + G V + +Y+++ +E ++
Sbjct: 166 NTVTYNTLVKGLC--MHGNLNKSLQFLDRLMQKGLVP-NAFTYSSLLEAAYKERGVNEAM 222
Query: 322 KVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKI 381
++LDE+ +KG + + + +L + ++EA+ L++ + P+V LLR +
Sbjct: 223 RLLDEIIAKGGQPNLVSYNVLLTGLCKEGRIEEAIRLFKNLPSKGFSPNVVSYNILLRSL 282
Query: 382 VVSKQLDMRLFSKVVRVFRE-NGNVLTDAML--NSVLKALISVGRMGECNKILKAMEEGG 438
+ + + + E NG + +++ N ++ +L G++ + +++ M G
Sbjct: 283 CYEGR-----WEEANELLAEMNGRERSPSIVTYNILIGSLAFHGKIEQALQVIDEMMMGP 337
Query: 439 FIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAA 498
F ++ + I RL GK + +D M G ++ + I C G + +A
Sbjct: 338 FKPTATSYNPIIARLCKEGKVEAVVNCLDQM-IFGRCSPNEGTFNAIAVLCYEGKVQEAF 396
Query: 499 DCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIK 558
Q + K+ +S Y +V+ C K A ++ + Y P TY LI+
Sbjct: 397 SLIQSLGNKQNSSIHDYYKG-VVSCLCKKGNTYPAFLLLYEMTK-YGFTPDSYTYSSLIR 454
Query: 559 NLLVQRGFKDALSLLCLMKDHGFPPFVDPF---IKYVSKSGTSDDAIAFLKGMTSKRF-P 614
L ++ +A+ + L+++ + P +D F I KS +D ++ + M K + P
Sbjct: 455 GLCIEGMLYEAMEIFKLLEEDHYRPDIDNFNALILGFCKSHRTDLSLEVFEMMIEKGYTP 514
Query: 615 SMSVVLCLFAAFFQARRHSEAQDLLSKCPR 644
S + L H E ++L ++ R
Sbjct: 515 SETTYTILVEGII----HEEEKELAAEVLR 540
Score = 53.9 bits (128), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 63/301 (20%), Positives = 131/301 (43%), Gaps = 14/301 (4%)
Query: 318 DRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFL 377
D F+ L+ + G++ ++ ++L + N +K+A+ + E ++C P TFL
Sbjct: 80 DAFFH-LEHIVKNGHKPDVVQATQLLYDLCKSNKMKKAIRVMEMMISCGIIPDAASYTFL 138
Query: 378 LRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEG 437
+ + K+ ++ ++V ++G N+++K L G + + + L + +
Sbjct: 139 VNHLC--KRGNVGYAMQLVEKMEDSGYPANTVTYNTLVKGLCMHGNLNKSLQFLDRLMQK 196
Query: 438 GFIASSNMKSKIAFRLSSAGKK---DEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDL 494
G + ++ S + L +A K+ +EA +D + A G + L+ G C G +
Sbjct: 197 GLVPNAFTYSSL---LEAAYKERGVNEAMRLLDEIIAKGGQPNLVSYNVLLTGLCKEGRI 253
Query: 495 DKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYE 554
++A F+ + K G S + ++L+ + C + R +A + + + + P TY
Sbjct: 254 EEAIRLFKNLPSK-GFSPNVVSYNILLRSLCYEGRWEEANELLAE-MNGRERSPSIVTYN 311
Query: 555 ELIKNLLVQRGFKDALSLLCLMKDHGFPPFV---DPFIKYVSKSGTSDDAIAFLKGMTSK 611
LI +L + AL ++ M F P +P I + K G + + L M
Sbjct: 312 ILIGSLAFHGKIEQALQVIDEMMMGPFKPTATSYNPIIARLCKEGKVEAVVNCLDQMIFG 371
Query: 612 R 612
R
Sbjct: 372 R 372
Score = 45.8 bits (107), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 46/220 (20%), Positives = 94/220 (42%), Gaps = 6/220 (2%)
Query: 401 ENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKD 460
+NG+ +L L +M + ++++ M G I + + + L G
Sbjct: 90 KNGHKPDVVQATQLLYDLCKSNKMKKAIRVMEMMISCGIIPDAASYTFLVNHLCKRGNVG 149
Query: 461 EANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLL 520
A + ++ ME SG + +L+KG C+ G+L+K+ ++++K +A LL
Sbjct: 150 YAMQLVEKMEDSGYPANTVTYNTLVKGLCMHGNLNKSLQFLDRLMQKGLVPNAFTYSSLL 209
Query: 521 VNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHG 580
Y K R ++ + + + +P +Y L+ L + ++A+ L + G
Sbjct: 210 EAAY--KERGVNEAMRLLDEIIAKGGQPNLVSYNVLLTGLCKEGRIEEAIRLFKNLPSKG 267
Query: 581 FPPFV---DPFIKYVSKSGTSDDAIAFLKGMTSK-RFPSM 616
F P V + ++ + G ++A L M + R PS+
Sbjct: 268 FSPNVVSYNILLRSLCYEGRWEEANELLAEMNGRERSPSI 307
Score = 39.3 bits (90), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 77/369 (20%), Positives = 145/369 (39%), Gaps = 33/369 (8%)
Query: 166 TYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRNKMTEKFEKE-GLESDLEKLKGI 224
TYN +++ + +HG + + +D + +KG + + + E KE G+ + L I
Sbjct: 169 TYNTLVKGLCMHGNLNKSLQFLDRLMQKGLVPNAFTYSSLLEAAYKERGVNEAMRLLDEI 228
Query: 225 FATGSIDN--SIEKVASRICKVVRSDIWGDDVERQLRDL-NVTFSNDLVKFVVDKLGDEP 281
A G N S + + +CK R ++ R ++L + FS ++V + +
Sbjct: 229 IAKGGQPNLVSYNVLLTGLCKEGRI----EEAIRLFKNLPSKGFSPNVVSYNI------L 278
Query: 282 KKALIF-FRWAEESGFVKHDES--------SYNAMASVLGREDCIDRFWKVLDEMRSKGY 332
++L + RW E + + +YN + L I++ +V+DEM +
Sbjct: 279 LRSLCYEGRWEEANELLAEMNGRERSPSIVTYNILIGSLAFHGKIEQALQVIDEMMMGPF 338
Query: 333 EMEMETCVKVLGRFSERNMVKEAVDLYE---FAMACKNKPSVNCCTFLLRKIVVSKQLDM 389
+ + ++ R + V+ V+ + F N+ + N L + V +
Sbjct: 339 KPTATSYNPIIARLCKEGKVEAVVNCLDQMIFGRCSPNEGTFNAIAVLCYEGKVQEA--- 395
Query: 390 RLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKI 449
FS + + + + + D V+ L G +L M + GF S S +
Sbjct: 396 --FSLIQSLGNKQNSSIHD-YYKGVVSCLCKKGNTYPAFLLLYEMTKYGFTPDSYTYSSL 452
Query: 450 AFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEG 509
L G EA E +E + +LI G C + D + + F+ M+EK
Sbjct: 453 IRGLCIEGMLYEAMEIFKLLEEDHYRPDIDNFNALILGFCKSHRTDLSLEVFEMMIEKGY 512
Query: 510 T-SHAGYAI 517
T S Y I
Sbjct: 513 TPSETTYTI 521
>gi|302774715|ref|XP_002970774.1| hypothetical protein SELMODRAFT_94312 [Selaginella moellendorffii]
gi|300161485|gb|EFJ28100.1| hypothetical protein SELMODRAFT_94312 [Selaginella moellendorffii]
Length = 497
Score = 56.2 bits (134), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 77/326 (23%), Positives = 137/326 (42%), Gaps = 16/326 (4%)
Query: 266 SNDLVKF--VVDKLGDEPKKALIF--FRWAEESGFVKHDESSYNAMASVLGREDCIDRFW 321
S D++ + +VD L E K A + R ++G V + +YN++ L R +
Sbjct: 145 SPDVITYTILVDGLCKESKVAAAWEVLREMLDAGCVPN-LVTYNSLLHGLCRARRVSDAL 203
Query: 322 KVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKI 381
++ +M +G + T ++ + VK+A + + P + L+ +
Sbjct: 204 ALMRDMTCRGCTPNVVTYGTLIDGLCKVGRVKDACAMLADMIDKGGTPDLMIYNMLINGL 263
Query: 382 VVSKQLD--MRLFSKVVRVFRENGNVLTDAML-NSVLKALISVGRMGECNKILKAMEEGG 438
+ Q+D + L + V +G + D + +SV+ L R+ E ++L ++ G
Sbjct: 264 CKADQVDESIALLRRAV-----SGGIKPDVVTYSSVIYGLCRSNRLDEACRLLLYVKSRG 318
Query: 439 FIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAA 498
+ S + L AGK DEA + + M G D + +LI G C AG +D+A
Sbjct: 319 CPPDVILYSTLIDGLCKAGKVDEAFDLYEVMTGDGCDADVVTYSTLIDGLCKAGRVDEAH 378
Query: 499 DCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIK 558
+MV + GT + + L+ C N +A + V R + P TY LI
Sbjct: 379 LLLARMV-RMGTPPSTMTYNSLIKGLCDLNHLDEAIELVEEMERS-NCAPSAVTYNILIH 436
Query: 559 NLL-VQRGFKDALSLLCLMKDHGFPP 583
+ ++R AL M D+G P
Sbjct: 437 GMCRMERVDSAALDYFQEMIDNGVIP 462
Score = 53.9 bits (128), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 53/220 (24%), Positives = 88/220 (40%), Gaps = 6/220 (2%)
Query: 429 KILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGH 488
++L+ M + G + + + + L A + +A M M G + +LI G
Sbjct: 169 EVLREMLDAGCVPNLVTYNSLLHGLCRARRVSDALALMRDMTCRGCTPNVVTYGTLIDGL 228
Query: 489 CVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKP 548
C G + A M++K GT ++L+N C ++ ++ + V +KP
Sbjct: 229 CKVGRVKDACAMLADMIDKGGTPDL-MIYNMLINGLCKADQVDESIALLRRAVSG-GIKP 286
Query: 549 WHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFV---DPFIKYVSKSGTSDDAIAFL 605
TY +I L +A LL +K G PP V I + K+G D+A
Sbjct: 287 DVVTYSSVIYGLCRSNRLDEACRLLLYVKSRGCPPDVILYSTLIDGLCKAGKVDEAFDLY 346
Query: 606 KGMTSKRFPSMSVVL-CLFAAFFQARRHSEAQDLLSKCPR 644
+ MT + V L +A R EA LL++ R
Sbjct: 347 EVMTGDGCDADVVTYSTLIDGLCKAGRVDEAHLLLARMVR 386
Score = 41.2 bits (95), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 49/193 (25%), Positives = 79/193 (40%), Gaps = 12/193 (6%)
Query: 453 LSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSH 512
L + D A E +HM++ + +L+ G G L++A FQ+M+++ SH
Sbjct: 20 LCKNNEPDRAQELFEHMKSVECSPSMVTYNTLLDGLFRTGKLERAMALFQEMLDRR--SH 77
Query: 513 AGYAIDLLVNTYCSKNRAIDACKFVHNCVREYD--LKPWHTTYEELIKNLLVQRGFKDAL 570
+ ++LV C + A +F R+ D P TY LI L A+
Sbjct: 78 DVISFNILVTGLCRAGKIETALEF----FRKMDDRCSPNVITYSVLIDGLCKANRVSQAV 133
Query: 571 SLLCLMKDHGFPPFVDPF---IKYVSKSGTSDDAIAFLKGMT-SKRFPSMSVVLCLFAAF 626
LL MK G P V + + + K A L+ M + P++ L
Sbjct: 134 ELLESMKARGCSPDVITYTILVDGLCKESKVAAAWEVLREMLDAGCVPNLVTYNSLLHGL 193
Query: 627 FQARRHSEAQDLL 639
+ARR S+A L+
Sbjct: 194 CRARRVSDALALM 206
>gi|147789026|emb|CAN75781.1| hypothetical protein VITISV_012425 [Vitis vinifera]
Length = 993
Score = 56.2 bits (134), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 51/215 (23%), Positives = 88/215 (40%), Gaps = 11/215 (5%)
Query: 431 LKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCV 490
L+ M++ G + + I GK DEA +E G +V + M+V+LI G C
Sbjct: 216 LEKMKKDGLKPNLVTYTAIMLGFCKKGKLDEAYTLFKMVENLGIEVDEFMYVTLIDGFCT 275
Query: 491 AGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWH 550
GD+D + M EK G S + + ++N C R +A + +
Sbjct: 276 RGDIDCVFGLLEDM-EKRGISPSIVTYNSIINGLCKAGRTSEADEVSKGIAGD------A 328
Query: 551 TTYEELIKNLLVQRGFKDALSLLCLMKDHGFP---PFVDPFIKYVSKSGTSDDAIAFLKG 607
T+ L+ + + K L +++ G + IK + G +DA AF KG
Sbjct: 329 VTFSTLLHGYIEEENVKGILETKRRLEEDGVCIDLVMCNTIIKALLMVGALEDAYAFYKG 388
Query: 608 MTSKRFPSMSVVLC-LFAAFFQARRHSEAQDLLSK 641
M+ + SV C + + + R EA ++ +
Sbjct: 389 MSGMDLVADSVTYCTMINGYCRVXRIEEALEIFDE 423
Score = 41.2 bits (95), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 50/245 (20%), Positives = 99/245 (40%), Gaps = 21/245 (8%)
Query: 383 VSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIAS 442
+ K LD+ F K + G L NSV+ L G + + ++ ++E+ + S
Sbjct: 655 LDKALDLCAFVK------KKGIALNIYAYNSVINGLCRQGCLVQAFRLFDSLEKIDLVPS 708
Query: 443 SNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQ 502
+ + L G +A + + M G + +++ SLI G+C G++++A +
Sbjct: 709 EITYATLIDSLCKEGCLLDAKQLFEKMVXKGFNPNVRVYNSLIDGYCKFGNMEEALNLLI 768
Query: 503 KMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLV 562
+ + + + L+N YC K A F ++ D+ P + L++ L
Sbjct: 769 DL-KARCIKPDEFTVSALINGYCHKGDMEGALGFFFE-FKKKDILPDFLGFMYLVRGLCA 826
Query: 563 Q------RGF-------KDALSLLCLMKDHGFPPFVDPFIKYVSKSGTSDDAIAFLKGMT 609
+ RG + L L+ + V+ FI + + G+ +A+ L +
Sbjct: 827 KGRMEEARGILREMLQTRSVLELINRVDTEIETESVESFIISLCEQGSIQEAVTVLNEVG 886
Query: 610 SKRFP 614
S FP
Sbjct: 887 SIFFP 891
>gi|242048026|ref|XP_002461759.1| hypothetical protein SORBIDRAFT_02g007610 [Sorghum bicolor]
gi|241925136|gb|EER98280.1| hypothetical protein SORBIDRAFT_02g007610 [Sorghum bicolor]
Length = 896
Score = 56.2 bits (134), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 68/308 (22%), Positives = 128/308 (41%), Gaps = 18/308 (5%)
Query: 281 PKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCV 340
P A FF + + +YNA+ L + + KVL+EM GY + C
Sbjct: 94 PSLAAPFFLASSAASPHPLPADAYNAVLPFLSHD--LAAMEKVLEEMSVLGYGVPNPACA 151
Query: 341 KVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFR 400
++ + +A + K +P+ + T L+ + ++Q + L +++R +
Sbjct: 152 DLVSALVRTRRLDDAERVIAAMRRLKFRPAFSAYTVLIGAMAEARQPERAL--ELLRQMQ 209
Query: 401 ENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFR------LS 454
E G + + ++++AL R G L ++E + S ++ I
Sbjct: 210 EVGYEVGVPLFTTLVRAL---AREGRVEGALALVDE---VKGSCLEPDIVLYNVCIDCFG 263
Query: 455 SAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAG 514
AG D A +F +++ G D + S+I C AG L +A + F +M E E
Sbjct: 264 KAGNVDMAWKFFHELKSQGLKPDDVSYTSMIWVLCKAGRLSEAEELFGQM-ETERAVPCA 322
Query: 515 YAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLC 574
YA + ++ Y S + +A K + ++E P ++ ++ L +R +AL+L
Sbjct: 323 YAYNTMIMGYGSAGQFENAYKLLDQ-LKERGCIPSVVSFNSILTCLGKKRKVDEALTLFE 381
Query: 575 LMKDHGFP 582
MK P
Sbjct: 382 AMKKDAEP 389
Score = 48.9 bits (115), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 67/324 (20%), Positives = 135/324 (41%), Gaps = 26/324 (8%)
Query: 303 SYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFA 362
+YN M G + +K+LD+++ +G + + +L ++ V EA+ L+E A
Sbjct: 324 AYNTMIMGYGSAGQFENAYKLLDQLKERGCIPSVVSFNSILTCLGKKRKVDEALTLFE-A 382
Query: 363 MACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAM-LNSVLKALISV 421
M +P+ + ++ + ++ +++ + ++R E+ + + + +N ++ L
Sbjct: 383 MKKDAEPNSSTYNIIIDMLCMAGKVEE---AYMIRDEMEHAGLFPNLLTVNIMVDRLCKA 439
Query: 422 GRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMW 481
+ ++ + + G +S + L G D+A ++M +G + ++
Sbjct: 440 KKFEPAYEMFETASQRGCNPNSVTYCSLIDGLGKKGNVDDAYRLFENMLDTGHNANPVVY 499
Query: 482 VSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDL-LVNTYCS---KNRAIDACKFV 537
SLI+ + G + F++M + G DL L+NTY K ++ + +
Sbjct: 500 TSLIRNFFMHGRKEDGHKIFKEM------NRRGCQPDLTLLNTYMDCVFKAGDVEKGRAI 553
Query: 538 HNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFP-------PFVDPFIK 590
++ Y P +Y LI L ++ S+ MK GF VD F
Sbjct: 554 FEDIKGYGFLPDVRSYSILIHGLTKAGQARETSSIFHAMKQQGFALDARAYNAVVDGF-- 611
Query: 591 YVSKSGTSDDAIAFLKGMTSKRFP 614
KSG D A L+ M KR P
Sbjct: 612 --CKSGKLDKAYEVLEEMKVKRVP 633
Score = 48.9 bits (115), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 53/232 (22%), Positives = 90/232 (38%), Gaps = 18/232 (7%)
Query: 387 LDMRLFSKVVRVFRENGNV----------------LTDAMLNSVLKALISVGRMGECNKI 430
LD R ++ VV F ++G + T A S++ L + R+ E +
Sbjct: 599 LDARAYNAVVDGFCKSGKLDKAYEVLEEMKVKRVPPTVATYGSIIDGLAKIDRLDEAYML 658
Query: 431 LKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCV 490
+ + G + + S + G+ DEA ++ M G W SL+
Sbjct: 659 FEEAKSKGIELNVIVYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLMDALVK 718
Query: 491 AGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWH 550
A ++++A CFQ M E + + + Y +L+N C + A F +++ L P
Sbjct: 719 AEEINEALICFQSMKEMKCSPNT-YTYSILINGLCRVQKYNKAFVFWQE-MQKQGLVPNV 776
Query: 551 TTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPFIKYVSKSGTSDDAI 602
TY +I L DA SL K +G P F + ++ AI
Sbjct: 777 VTYTTMIAGLAKVGNITDACSLFERFKANGGTPDAASFNALIEGMSHANRAI 828
Score = 47.0 bits (110), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 85/402 (21%), Positives = 161/402 (40%), Gaps = 62/402 (15%)
Query: 163 SSKTYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGV-----ASHVRN-----------KMT 206
+S TY ++ +G G V + + L + M G+ S +RN K+
Sbjct: 460 NSVTYCSLIDGLGKKGNVDDAYRLFENMLDTGHNANPVVYTSLIRNFFMHGRKEDGHKIF 519
Query: 207 EKFEKEGLESDLEKLKG----IFATGSIDNSIEKVASRICKVVRSDIWGDDVERQLRDLN 262
++ + G + DL L +F G ++ + + DI G +R +
Sbjct: 520 KEMNRRGCQPDLTLLNTYMDCVFKAGDVEKG---------RAIFEDIKGYGFLPDVRSYS 570
Query: 263 VTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWK 322
+ + K G + + IF ++ GF D +YNA+ + +D+ ++
Sbjct: 571 ILIHG------LTKAGQARETSSIFHAMKQQ-GFA-LDARAYNAVVDGFCKSGKLDKAYE 622
Query: 323 VLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIV 382
VL+EM+ K + T ++ ++ + + EA L+E A K+K L IV
Sbjct: 623 VLEEMKVKRVPPTVATYGSIIDGLAKIDRLDEAYMLFEEA---KSK------GIELNVIV 673
Query: 383 VSKQLDMRLFSKVVRVFRENGNVLTDAML-----------NSVLKALISVGRMGECNKIL 431
S +D F KV R+ + ++ + M+ NS++ AL+ + E
Sbjct: 674 YSSLIDG--FGKVGRI--DEAYLILEEMMKKGLTPNVYTWNSLMDALVKAEEINEALICF 729
Query: 432 KAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVA 491
++M+E ++ S + L K ++A F M+ G + ++I G
Sbjct: 730 QSMKEMKCSPNTYTYSILINGLCRVQKYNKAFVFWQEMQKQGLVPNVVTYTTMIAGLAKV 789
Query: 492 GDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDA 533
G++ A F++ GT A + + L+ NRAI+A
Sbjct: 790 GNITDACSLFERFKANGGTPDAA-SFNALIEGMSHANRAIEA 830
Score = 41.2 bits (95), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 105/514 (20%), Positives = 190/514 (36%), Gaps = 71/514 (13%)
Query: 146 EARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHV---- 201
EA F +E E + YN M+ G G + + L+D +K++G + S V
Sbjct: 305 EAEELFGQ-METERAVPCAYAYNTMIMGYGSAGQFENAYKLLDQLKERGC-IPSVVSFNS 362
Query: 202 -------RNKMTEKFEK-EGLESDLEKLKGIFATGSIDNSIEKVASRICKVVRSDIWGDD 253
+ K+ E E ++ D E S N I + KV + + D+
Sbjct: 363 ILTCLGKKRKVDEALTLFEAMKKDAEP------NSSTYNIIIDMLCMAGKVEEAYMIRDE 416
Query: 254 VERQLRDLNVTFSNDL-VKFVVDKLGDEPK--KALIFFRWAEESGFVKHDESSYNAMASV 310
+E F N L V +VD+L K A F A + G + +Y ++
Sbjct: 417 MEHA-----GLFPNLLTVNIMVDRLCKAKKFEPAYEMFETASQRG-CNPNSVTYCSLIDG 470
Query: 311 LGREDCIDRFWKVLDEMRSKGYEMEMETCVKVL------GR-------FSERNM--VKEA 355
LG++ +D +++ + M G+ ++ GR F E N +
Sbjct: 471 LGKKGNVDDAYRLFENMLDTGHNANPVVYTSLIRNFFMHGRKEDGHKIFKEMNRRGCQPD 530
Query: 356 VDLYEFAMACKNK--------------------PSVNCCTFLLRKIVVSKQLDMRLFSKV 395
+ L M C K P V + L+ + + Q R S +
Sbjct: 531 LTLLNTYMDCVFKAGDVEKGRAIFEDIKGYGFLPDVRSYSILIHGLTKAGQ--ARETSSI 588
Query: 396 VRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSS 455
++ G L N+V+ G++ + ++L+ M+ + I L+
Sbjct: 589 FHAMKQQGFALDARAYNAVVDGFCKSGKLDKAYEVLEEMKVKRVPPTVATYGSIIDGLAK 648
Query: 456 AGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGY 515
+ DEA + ++ G ++ ++ SLI G G +D+A ++M+ K+G + Y
Sbjct: 649 IDRLDEAYMLFEEAKSKGIELNVIVYSSLIDGFGKVGRIDEAYLILEEMM-KKGLTPNVY 707
Query: 516 AIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCL 575
+ L++ K I+ ++E P TY LI L + + A
Sbjct: 708 TWNSLMDALV-KAEEINEALICFQSMKEMKCSPNTYTYSILINGLCRVQKYNKAFVFWQE 766
Query: 576 MKDHGFPPFVDPF---IKYVSKSGTSDDAIAFLK 606
M+ G P V + I ++K G DA + +
Sbjct: 767 MQKQGLVPNVVTYTTMIAGLAKVGNITDACSLFE 800
>gi|449435202|ref|XP_004135384.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At1g22960, mitochondrial-like [Cucumis sativus]
Length = 717
Score = 56.2 bits (134), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 110/585 (18%), Positives = 219/585 (37%), Gaps = 73/585 (12%)
Query: 101 FTVVSDIFYKFSDVNDISKQLELSGVVFTHEMVLKVLKNLESSPDEARRFFNWVLEKESE 160
F + + + F N +S Q V+ + ++VL ++ P A RFF WV+ +
Sbjct: 58 FDTIKEKPWAFCKNNWVSDQF--GAVITDPHLFIRVLHSMRIRPRVALRFFRWVMAQPDF 115
Query: 161 RLSSKTYNLMLRI-VGVHGLVQEFWGLVDVMKKKGYGV-----ASHVRNKMT-EKFEKEG 213
+ S + +L I VG + +W + V+ + +GV A HV + +K + G
Sbjct: 116 KESEFVFCAILDILVGNDLMHAAYWVMERVVSFEMHGVVDVLIAGHVXCLLVFDKMIRNG 175
Query: 214 LESDLEKLKGIFATGSIDNSIEKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFV 273
L D++ I +N + K +++G + ++ VT++ L +
Sbjct: 176 LLPDVKNCNRILRVLRDENLLSKA---------KNVYGMMEQFGIKPTVVTYNTMLDSYC 226
Query: 274 VDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYE 333
+ D+ AL +E G +D +YN + + L ++ +++ +++EM + G
Sbjct: 227 KEGRVDQ---ALELLSEMQERGCYPND-VTYNVLVNGLSKKGELEQAKGLIEEMLNSGLN 282
Query: 334 MEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQL------ 387
+ T ++ F ++ + EA DL E + + P+++ L+ + Q+
Sbjct: 283 VSAYTYNPLINGFCQKGLFVEAFDLVEEMVNRRAFPTLSTYNTLMYGLCKWVQVTGVRLR 342
Query: 388 -----------DMRLFSKVVRVFRENGNVLTDAML-----------------NSVLKALI 419
D+ F+ ++ + G +++A L N+++ L
Sbjct: 343 FSDMLKSKFTPDIVSFNSLLYGYCRTG-CISEAFLLFDELKCRDLVPTVITYNTLIHGLC 401
Query: 420 SVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDK 479
G + ++ K M + G + + G A F + M + G
Sbjct: 402 MWGYLDAALRLKKEMTDQGLFPDIFTYTILVNGCFKLGYVSMARGFFNEMLSKGLKPDRF 461
Query: 480 MWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLL-----VNTYCSKNRAIDAC 534
+ + I G D A ++M+ AG+ D++ V+ C + +AC
Sbjct: 462 AYNTRIVGEMKIADTSVAFSMQEEMLA------AGFPPDVITYNVFVHALCQQGNFEEAC 515
Query: 535 KFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPFIKYVSK 594
+ N V + L P H TY +I + + A + M G P V + +
Sbjct: 516 DLLENMVSD-GLIPDHVTYTSIINGFVKNGHLRKAREVFNEMLSKGVAPSVVTYTVLIHA 574
Query: 595 SGTS---DDAIAFLKGMTSKRFPSMSVVL-CLFAAFFQARRHSEA 635
D A + M K P+ + + RR EA
Sbjct: 575 HAAKQMLDLAFMYFSKMLEKSVPANVITYNAIINGLCMTRRMDEA 619
>gi|115486223|ref|NP_001068255.1| Os11g0607100 [Oryza sativa Japonica Group]
gi|77551887|gb|ABA94684.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
gi|113645477|dbj|BAF28618.1| Os11g0607100 [Oryza sativa Japonica Group]
Length = 671
Score = 56.2 bits (134), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 73/338 (21%), Positives = 134/338 (39%), Gaps = 23/338 (6%)
Query: 287 FFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRF 346
FFR E+G + +Y A L + + + + VL+EM +G + + T ++
Sbjct: 238 FFRRMLETG-TPPNVVNYTAWIDGLCKRRYVKQAFHVLEEMVGRGLKPNVYTHTTLIDGL 296
Query: 347 SERNMVKEAVDLY-EFAMACKNKPSVNCCTFLLRKIVVSKQL---DMRLFSKVVRVFREN 402
+ + A L+ + + KP+V+ T ++ +L +M L V + + N
Sbjct: 297 CKIGWTERAFRLFLKLIKSSSYKPNVHTYTVMIGGYCREGKLARAEMLLVRMVEQGLKPN 356
Query: 403 GNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEA 462
N T +++ G +++ M++ GF+ + + + GK EA
Sbjct: 357 TNTYT-----TLIGGHCKGGSFDRAFELMNKMKQEGFLPNIYTYNAVIDGFCKKGKIQEA 411
Query: 463 NEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVN 522
+ + + G + LI HC G + A D F +MVE G A L++
Sbjct: 412 YKVLRMATSQGLKFDKITYTILITEHCKQGHITYALDLFDRMVE-NGCCPDIEAYTSLIS 470
Query: 523 TYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELI-------KNLLVQRGFKDALSLLCL 575
TYC + + ++ KF C+ L P TY +I ++ L R F+ + C
Sbjct: 471 TYCQQRQMEESQKFFDKCLM-IGLLPTKQTYTSMIAGYCKVGRSTLALRVFERMVQNGCF 529
Query: 576 MKDHGFPPFVDPFIKYVSKSGTSDDAIAFLKGMTSKRF 613
+ I + K ++A A +GM KR
Sbjct: 530 ADSITY----GALISGLCKESRLEEAKALYEGMLDKRL 563
Score = 55.5 bits (132), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 69/298 (23%), Positives = 120/298 (40%), Gaps = 11/298 (3%)
Query: 300 DESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLY 359
DE S+ A+ V RE ++ +L M G+ ++ TC V+ E+ K+ + +
Sbjct: 180 DERSFRALVVVCCREGKVEEVDALLAAMWRYGFSLDNATCTVVVRSLCEKGRFKDVSEFF 239
Query: 360 EFAMACKNKPS-VNCCTFL--LRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLK 416
+ P+ VN ++ L K KQ L V R + NV T L +
Sbjct: 240 RRMLETGTPPNVVNYTAWIDGLCKRRYVKQAFHVLEEMVGRGLKP--NVYTHTTL---ID 294
Query: 417 ALISVGRMGECNKI-LKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSD 475
L +G ++ LK ++ + + + + + GK A + M G
Sbjct: 295 GLCKIGWTERAFRLFLKLIKSSSYKPNVHTYTVMIGGYCREGKLARAEMLLVRMVEQGLK 354
Query: 476 VGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACK 535
+ +LI GHC G D+A + KM ++EG Y + +++ +C K + +A K
Sbjct: 355 PNTNTYTTLIGGHCKGGSFDRAFELMNKM-KQEGFLPNIYTYNAVIDGFCKKGKIQEAYK 413
Query: 536 FVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPFIKYVS 593
+ + LK TY LI Q AL L M ++G P ++ + +S
Sbjct: 414 VLRMATSQ-GLKFDKITYTILITEHCKQGHITYALDLFDRMVENGCCPDIEAYTSLIS 470
>gi|449435037|ref|XP_004135302.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04130,
mitochondrial-like [Cucumis sativus]
Length = 519
Score = 56.2 bits (134), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 81/374 (21%), Positives = 153/374 (40%), Gaps = 34/374 (9%)
Query: 262 NVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFW 321
++ S+DLV ++ + D+ K AL FRWAE KH Y+ + LG+ + +
Sbjct: 99 SIQLSHDLVYKLLQRFKDDWKSALGVFRWAESLSGFKHTPDLYDILIDTLGKTKQLVKMR 158
Query: 322 KVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAV----DLYEFAMACKNKPSVNCCTFL 377
+L+EM+ + + ++T K + RF+ + AV DL + + KN S+N
Sbjct: 159 GMLEEMK-EARLVTLDTVAKAMRRFAGAGQWENAVRIFDDLETYGLE-KNTESMNVLLDT 216
Query: 378 L---RKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAM 434
L +K+ ++Q+ + L S + N N N + V ++ E + L+ M
Sbjct: 217 LCKEKKVEKARQMYLELKSHIA----PNANT-----FNMFIHGWCKVNKIDEAHWTLEEM 267
Query: 435 EEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDL 494
+ G S I ++ E +D M+A G + +++ + +
Sbjct: 268 KGYGHRPCVISYSTIILFYCHRCNFNKVYELLDEMDAQGCPANVITYTTIMCSLTKSEEF 327
Query: 495 DKAADCFQKMVEKEGTSHAGYAID-----LLVNTYCSKNRAIDACKFVHNCVREYDLKPW 549
++A ++M AGY D L++T + +A + + P
Sbjct: 328 EEALQIAERM------KSAGYEPDTLFYNCLIHTLGRAGKVREAIHVFEVEMPSKSVLPN 381
Query: 550 HTTYEELIKNLLVQRGFKDALSLLCLMK--DHGFPPFVD--PFIKYVSKSGTSD-DAIAF 604
+TY +I + + A+ LL M+ +H P P +K ++G +D D
Sbjct: 382 TSTYNSMIAMYCRRAREEKAMKLLEEMQKSEHCKPDVQTYYPLLKSCFRTGKTDYDLSNL 441
Query: 605 LKGMTSKRFPSMSV 618
L M +K S+ +
Sbjct: 442 LDEMINKHHLSLDI 455
>gi|115453133|ref|NP_001050167.1| Os03g0363700 [Oryza sativa Japonica Group]
gi|108708311|gb|ABF96106.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
gi|113548638|dbj|BAF12081.1| Os03g0363700 [Oryza sativa Japonica Group]
Length = 564
Score = 56.2 bits (134), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 49/195 (25%), Positives = 84/195 (43%), Gaps = 12/195 (6%)
Query: 453 LSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSH 512
L G DEA + + M G + + + SL+ +C AGD + A + +M+ K G
Sbjct: 300 LCKMGCIDEARQIWNEMVDKGMEPNEYAYCSLVAYYCKAGDFEMARKVYDEMLGK-GLKE 358
Query: 513 AGYAIDLLVNTYCSKNRAIDACKFVHNCVR---EYDLKPWHTTYEELIKNLLVQRGFKDA 569
+ + ++LV +C+ R +A V+ E+D+ TY LI+ L +A
Sbjct: 359 STVSCNILVTGFCTHGRVDEALGMFEEMVKKGIEHDV----ITYNILIQGLCKAGRLSEA 414
Query: 570 LSLLCLMKDHGFPPFVD---PFIKYVSKSGTSDDAIAFLKGMTSKRF-PSMSVVLCLFAA 625
+ + + G P V P I + + G D A+ LK M +K P + +
Sbjct: 415 IQVYEQLLSSGLEPSVSTFTPLIDTMCEEGQVDAAVELLKVMHAKGLEPLARINDSIING 474
Query: 626 FFQARRHSEAQDLLS 640
F +ARR + L+
Sbjct: 475 FCKARRPEDGMAWLA 489
Score = 45.8 bits (107), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 60/283 (21%), Positives = 120/283 (42%), Gaps = 19/283 (6%)
Query: 211 KEGLESDLEKLKGIFATGSIDNSIEKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLV 270
+ G+ L+ + + A S + KV+ + ++ + D V Q R ++ F++
Sbjct: 213 RRGVPPQLDAVADLVAAFSAAANFGKVSETLHLMIAAGSVPDTVIYQ-RIIHGLFAH--- 268
Query: 271 KFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSK 330
K+G E AL F + G+ D +Y L + CID ++ +EM K
Sbjct: 269 -----KMGSE---ALRVFNEIKLRGY-NVDAVTYTTAIDGLCKMGCIDEARQIWNEMVDK 319
Query: 331 GYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLD-- 388
G E ++ + + + A +Y+ + K S C L+ ++D
Sbjct: 320 GMEPNEYAYCSLVAYYCKAGDFEMARKVYDEMLGKGLKESTVSCNILVTGFCTHGRVDEA 379
Query: 389 MRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSK 448
+ +F ++V+ E+ +V+T N +++ L GR+ E ++ + + G S + +
Sbjct: 380 LGMFEEMVKKGIEH-DVIT---YNILIQGLCKAGRLSEAIQVYEQLLSSGLEPSVSTFTP 435
Query: 449 IAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVA 491
+ + G+ D A E + M A G + ++ S+I G C A
Sbjct: 436 LIDTMCEEGQVDAAVELLKVMHAKGLEPLARINDSIINGFCKA 478
>gi|449464228|ref|XP_004149831.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g77405-like [Cucumis sativus]
gi|449518241|ref|XP_004166151.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g77405-like [Cucumis sativus]
Length = 445
Score = 56.2 bits (134), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 69/296 (23%), Positives = 114/296 (38%), Gaps = 15/296 (5%)
Query: 283 KALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEM--RSKGYEMEMETCV 340
KAL FF W E +HDE + MA VL R + + W L EM R G + T
Sbjct: 116 KALEFFYWVETHFGFQHDEITCREMACVLARGNTLMGLWDFLKEMSRRENGGLVTTATIT 175
Query: 341 KVLGRFSERNMVKEAVDLYEFAMACKNKPSV---NCCTFLLRKIVVSKQLDMRLFSKVVR 397
++ E +V EA+ + KP V N +L +I K+ L +
Sbjct: 176 CLIKVLGEEGLVNEALTAFYRMKQFHCKPDVYAYNTVINVLCRIGNFKKARFLLEQMELP 235
Query: 398 VFRENGNVLTDAML-NSVLKALISVG-------RMGECNKILKAMEEGGFIASSNMKSKI 449
FR ++ T +L +S K + G R+ E N + + M GF + +
Sbjct: 236 GFRCPPDIFTYTILISSYCKYSLQTGCRKAIRRRLWEANHLFRIMLFKGFSPDVVTYNSL 295
Query: 450 AFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEG 509
+ A E + M G + S I+ + ++D+A + M +
Sbjct: 296 IDGCCKTYRIQRALELFEDMSKRGCTPNRLTYNSFIRYYSAVNEIDQAIKMLRMMQKMNH 355
Query: 510 TSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRG 565
+ +++ C + I+A F+ + E + P TY +L+ NLL G
Sbjct: 356 GIATSSSYTPIIHALCEGGKVIEARDFLLELLEEGSV-PREYTY-QLVCNLLNSAG 409
>gi|359493285|ref|XP_003634559.1| PREDICTED: pentatricopeptide repeat-containing protein At5g57250,
mitochondrial-like [Vitis vinifera]
Length = 993
Score = 56.2 bits (134), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 51/215 (23%), Positives = 88/215 (40%), Gaps = 11/215 (5%)
Query: 431 LKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCV 490
L+ M++ G + + I GK DEA +E G +V + M+V+LI G C
Sbjct: 216 LEKMKKDGLKPNLVTYTAIMLGFCKKGKLDEAYTLFKMVENLGIEVDEFMYVTLIDGFCT 275
Query: 491 AGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWH 550
GD+D + M EK G S + + ++N C R +A + +
Sbjct: 276 RGDIDCVFGLLEDM-EKRGISPSIVTYNSIINGLCKAGRTSEADEVSKGIAGD------A 328
Query: 551 TTYEELIKNLLVQRGFKDALSLLCLMKDHGFP---PFVDPFIKYVSKSGTSDDAIAFLKG 607
T+ L+ + + K L +++ G + IK + G +DA AF KG
Sbjct: 329 VTFSTLLHGYIEEENVKGILETKRRLEEDGVCIDLVMCNTIIKALLMVGALEDAYAFYKG 388
Query: 608 MTSKRFPSMSVVLC-LFAAFFQARRHSEAQDLLSK 641
M+ + SV C + + + R EA ++ +
Sbjct: 389 MSGMDLVADSVTYCTMINGYCRVSRIEEALEIFDE 423
Score = 41.2 bits (95), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 50/245 (20%), Positives = 99/245 (40%), Gaps = 21/245 (8%)
Query: 383 VSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIAS 442
+ K LD+ F K + G L NSV+ L G + + ++ ++E+ + S
Sbjct: 655 LDKALDLCAFVK------KKGIALNIYAYNSVINGLCRQGCLVQAFRLFDSLEKIDLVPS 708
Query: 443 SNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQ 502
+ + L G +A + + M G + +++ SLI G+C G++++A +
Sbjct: 709 EITYATLIDSLCKEGCLLDAKQLFEKMVIKGFNPNVRVYNSLIDGYCKFGNMEEALNLLI 768
Query: 503 KMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLV 562
+ + + + L+N YC K A F ++ D+ P + L++ L
Sbjct: 769 DL-KARCIKPDEFTVSALINGYCHKGDMEGALGFFFE-FKKKDILPDFLGFMYLVRGLCA 826
Query: 563 Q------RGF-------KDALSLLCLMKDHGFPPFVDPFIKYVSKSGTSDDAIAFLKGMT 609
+ RG + L L+ + V+ FI + + G+ +A+ L +
Sbjct: 827 KGRMEEARGILREMLQTRSVLELINRVDTEIETESVESFIISLCEQGSIQEAVTVLNEVG 886
Query: 610 SKRFP 614
S FP
Sbjct: 887 SIFFP 891
>gi|218191977|gb|EEC74404.1| hypothetical protein OsI_09760 [Oryza sativa Indica Group]
Length = 407
Score = 56.2 bits (134), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 74/325 (22%), Positives = 124/325 (38%), Gaps = 20/325 (6%)
Query: 251 GDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRW-AEESGFVKHDESSYNAMAS 309
G +E L L+ S+ +V + L D A FF W A GF S +A
Sbjct: 61 GRSLEADLDRLDPALSHPIVSATLRALTDRGLPAARFFDWLALRRGF----SPSAHAHNL 116
Query: 310 VLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSER----------NMVKEAVDLY 359
++ + + + M S +T + +L E ++VK +
Sbjct: 117 LVENAGSLADYRAMSRAMESMSTRRRQDTAIAILATLDEVGGPCRASGVFSLVKALASIC 176
Query: 360 EF--AMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKA 417
EF AM+ + + + V K D +V R +G N +L
Sbjct: 177 EFDAAMSVIQETARGARYYNALIAVKCKTGDFHGAREVFDEMRRSGFGPNSNSWNYLLGC 236
Query: 418 LISVGRMGECNKILKAME--EGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSD 475
L+ GR+ E ++++AME E I +S +A+ AG+ D A +D M
Sbjct: 237 LLKNGRVAEACELVEAMERSEHNDIPNSLTYEILAYHACKAGRMDSAMRILDQMFLEKLT 296
Query: 476 VGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACK 535
+ + IKG+ AG +D A M ++ S LL C +DA +
Sbjct: 297 PRITIHTAFIKGYLYAGRIDDACRYVSAMSTRDRRS-VNRNYSLLAKLLCKAGMIVDAGR 355
Query: 536 FVHNCVREYDLKPWHTTYEELIKNL 560
++ + + L P H+ Y +IK+L
Sbjct: 356 ILYELMEKEALLPDHSAYIRVIKDL 380
>gi|326510087|dbj|BAJ87260.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326520816|dbj|BAJ92771.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 1092
Score = 56.2 bits (134), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 45/193 (23%), Positives = 86/193 (44%), Gaps = 5/193 (2%)
Query: 412 NSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEA 471
N+++ L+ + E + + GF + + L G ++A D M
Sbjct: 840 NTIISGLVKSKMLDEAINLYYQLMSEGFSPTPCTYGPLLDGLLKDGNIEDAEALFDEMLE 899
Query: 472 SGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAI 531
G + ++ L+ G+ +AGD +K + F+ MVE +G + + ++++T C+ R
Sbjct: 900 CGCEPNCAIYNILLNGYRIAGDTEKVCELFESMVE-QGMNPDIKSYTVVIDTLCADGRLN 958
Query: 532 DACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFV---DPF 588
D + + + L+P TY LI L ++ALSL M+ G P + +
Sbjct: 959 DGLSYFKQ-LTDMGLEPDLITYNLLIHGLGKSGRLEEALSLYNDMEKKGIAPNLYTYNSL 1017
Query: 589 IKYVSKSGTSDDA 601
I Y+ K+G + +A
Sbjct: 1018 ILYLGKAGKAAEA 1030
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 98/486 (20%), Positives = 183/486 (37%), Gaps = 77/486 (15%)
Query: 155 LEKESERLSSKTYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRNKMTEKFEKEGL 214
+E R + +Y + +R++G G ++E + ++ K E+EG
Sbjct: 232 MEARGVRPNVYSYTICIRVLGQAGRLEEAY-------------------RILRKMEEEGC 272
Query: 215 ESDLEKLKGIFATGSIDNSIEKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVV 274
+ D+ T ++ I A R+ + W Q D VT+ ++
Sbjct: 273 KPDV-------VTNTVLIQILCDAGRLADA-KDVFWKMKASDQKPD-RVTYIT-----LL 318
Query: 275 DKLGDEPKKALIFFRW-AEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYE 333
DK GD + W A ++ + SY A L + +D V DEM+ KG
Sbjct: 319 DKCGDSGDSRSVSEIWNALKADGYNDNVVSYTAAVDALCQVGRVDEALDVFDEMKQKGII 378
Query: 334 MEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFS 393
+ + ++ F + + A++L+ + P+ N T +L K +
Sbjct: 379 PQQYSYNSLISGFLKADRFNRALELFNHMNI--HGPTPNGYTHVLFINYHGKSGESLKAL 436
Query: 394 KVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRL 453
K + + G V N+VL L GR+G ++ ++ G I+ N+ + +
Sbjct: 437 KRYELMKSKGIVPDVVAGNAVLYGLAKTGRLGMAKRVFHELKAMG-ISPDNITYTMMIKC 495
Query: 454 SSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHA 513
S +AS +D K++ +I+ C A D
Sbjct: 496 CS--------------KASNADEAMKIFAEMIENRC-------APDVL------------ 522
Query: 514 GYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLL 573
A++ L++ R +A K + ++E +L+P TY L+ L + K+ + LL
Sbjct: 523 --AMNSLIDMLYKAGRGNEAWKIFYE-LKEMNLEPTDCTYNTLLAGLGREGKVKEVMQLL 579
Query: 574 CLMKDHGFPPFV---DPFIKYVSKSGTSDDAIAFLKGMTSKR-FPSMSVVLCLFAAFFQA 629
M + FPP + + + + K+G + A+ L MT P +S + +
Sbjct: 580 EGMNSNSFPPNIITYNTVLDCLCKNGEVNYALDMLYSMTMNGCMPDLSSYNTVMYGLVKE 639
Query: 630 RRHSEA 635
R EA
Sbjct: 640 DRLDEA 645
Score = 48.5 bits (114), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 83/395 (21%), Positives = 167/395 (42%), Gaps = 22/395 (5%)
Query: 199 SHVRNKMTEKFEKEGLESDLEKLKGIFATGSI--DNSIEKVASRICKVVRSDIWGDDVER 256
S V + M +++G E +E + I ++G + D + + +CK + + ++ +
Sbjct: 697 SSVHSLMEGILKRDGTEKSIEFAENIASSGLLLDDLFLSPIIRHLCKH-KEALAAHELVK 755
Query: 257 QLRDLNVTFS----NDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLG 312
+ +L V+ N L+ +VD+ D A F + G DE +Y+ + +G
Sbjct: 756 KFENLGVSLKTGSYNALICGLVDE--DLIDIAEELFSEMKRLG-CDPDEFTYHLILDAMG 812
Query: 313 REDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVN 372
+ I+ K+ +EM +KGY+ T ++ + M+ EA++LY M+ P+
Sbjct: 813 KSMRIEDMLKIQEEMHNKGYKSTYVTYNTIISGLVKSKMLDEAINLYYQLMSEGFSPTP- 871
Query: 373 CCTF--LLRKIVVSKQLD--MRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECN 428
CT+ LL ++ ++ LF +++ E + + +LN A G +
Sbjct: 872 -CTYGPLLDGLLKDGNIEDAEALFDEMLECGCEPNCAIYNILLNGYRIA----GDTEKVC 926
Query: 429 KILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGH 488
++ ++M E G + + L + G+ ++ + + G + + LI G
Sbjct: 927 ELFESMVEQGMNPDIKSYTVVIDTLCADGRLNDGLSYFKQLTDMGLEPDLITYNLLIHGL 986
Query: 489 CVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKP 548
+G L++A + M EK+G + Y + L+ +A +A K + + KP
Sbjct: 987 GKSGRLEEALSLYNDM-EKKGIAPNLYTYNSLILYLGKAGKAAEAGKMYEELLAK-GWKP 1044
Query: 549 WHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPP 583
TY LI+ V ++A + M G P
Sbjct: 1045 NVFTYNALIRGYSVSGSPENAFAAYGRMIVGGCRP 1079
Score = 47.8 bits (112), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 95/479 (19%), Positives = 181/479 (37%), Gaps = 36/479 (7%)
Query: 142 SSPDEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHV 201
+ P+EA F V + ++++ N ML ++ HG V + + D+M+++ +
Sbjct: 79 ADPEEALELFLSVARQPRVVHTTESCNYMLELMRAHGRVGDVAQVFDLMQRQ---IIKAN 135
Query: 202 RNKMTEKFEKEGLESDLE---------KLKGIFATGSIDNSIEKVASRICKVVRS--DIW 250
F G+E L K GI N + I +V+S D
Sbjct: 136 VGTFCTVFGAVGVEGGLRSAPVALPVMKEAGIVLNAYTYNGL------IYFLVKSGFDRE 189
Query: 251 GDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAE-ESGFVKHDESSYNAMAS 309
DV + + V + ++ G + E E+ V+ + SY
Sbjct: 190 AMDVYKAMAADGVVPTVRTYSVLMLAFGKRRDAETVVGLLGEMEARGVRPNVYSYTICIR 249
Query: 310 VLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKP 369
VLG+ ++ +++L +M +G + ++ T ++ + + +A D++ A KP
Sbjct: 250 VLGQAGRLEEAYRILRKMEEEGCKPDVVTNTVLIQILCDAGRLADAKDVFWKMKASDQKP 309
Query: 370 SVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNK 429
LL K S D R S++ + +G + + AL VGR+ E
Sbjct: 310 DRVTYITLLDKCGDSG--DSRSVSEIWNALKADGYNDNVVSYTAAVDALCQVGRVDEALD 367
Query: 430 ILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHC 489
+ M++ G I + + A + + A E +HM G V I H
Sbjct: 368 VFDEMKQKGIIPQQYSYNSLISGFLKADRFNRALELFNHMNIHGPTPNGYTHVLFINYHG 427
Query: 490 VAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYC----SKNRAIDACKFVHNCVREYD 545
+G+ KA ++ M K G D++ +K + K V + ++
Sbjct: 428 KSGESLKALKRYELMKSK------GIVPDVVAGNAVLYGLAKTGRLGMAKRVFHELKAMG 481
Query: 546 LKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFV---DPFIKYVSKSGTSDDA 601
+ P + TY +IK +A+ + M ++ P V + I + K+G ++A
Sbjct: 482 ISPDNITYTMMIKCCSKASNADEAMKIFAEMIENRCAPDVLAMNSLIDMLYKAGRGNEA 540
Score = 41.6 bits (96), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 68/298 (22%), Positives = 108/298 (36%), Gaps = 9/298 (3%)
Query: 372 NCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKIL 431
N TF V + +R + V +E G VL N ++ L+ G E +
Sbjct: 135 NVGTFCTVFGAVGVEGGLRSAPVALPVMKEAGIVLNAYTYNGLIYFLVKSGFDREAMDVY 194
Query: 432 KAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVA 491
KAM G + + S + + + MEA G + I+ A
Sbjct: 195 KAMAADGVVPTVRTYSVLMLAFGKRRDAETVVGLLGEMEARGVRPNVYSYTICIRVLGQA 254
Query: 492 GDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHT 551
G L++A +KM E+EG +L+ C R DA K V ++ D KP
Sbjct: 255 GRLEEAYRILRKM-EEEGCKPDVVTNTVLIQILCDAGRLADA-KDVFWKMKASDQKPDRV 312
Query: 552 TYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPFIKYVS---KSGTSDDAIAFLKGM 608
TY L+ + + +K G+ V + V + G D+A+ M
Sbjct: 313 TYITLLDKCGDSGDSRSVSEIWNALKADGYNDNVVSYTAAVDALCQVGRVDEALDVFDEM 372
Query: 609 TSKR-FPSMSVVLCLFAAFFQARRHSEAQDLLSKCPRY---VRNHADVLNLLYSKKSG 662
K P L + F +A R + A +L + + + VL + Y KSG
Sbjct: 373 KQKGIIPQQYSYNSLISGFLKADRFNRALELFNHMNIHGPTPNGYTHVLFINYHGKSG 430
>gi|255660800|gb|ACU25569.1| pentatricopeptide repeat-containing protein [Verbena rigida]
Length = 418
Score = 56.2 bits (134), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 63/292 (21%), Positives = 112/292 (38%), Gaps = 5/292 (1%)
Query: 266 SNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLD 325
+ L++ VV + G A +F E G + D ++ + + + +
Sbjct: 32 AKTLIQIVVSRKGKGSASA-VFAAILETKGTQRSDIYVFSGLITAYLESGFLRDAIECYR 90
Query: 326 EMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSK 385
+ + + +TC KVL + K YE + C S+ L+ V K
Sbjct: 91 LTKEHKFRVPFDTCRKVLEHLMKLKYFKLVWGFYEENLECGYPASLYFFNILMHSFV--K 148
Query: 386 QLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNM 445
+ ++RL V + G + N+++ I +G + E ++ AM+ G
Sbjct: 149 EGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLNEGFRLKNAMQASGVQPDVYT 208
Query: 446 KSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMV 505
S + L K D+AN D M G + +LI GHC G +D A + +++M+
Sbjct: 209 YSVLINGLCKESKMDDANVLFDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQML 268
Query: 506 EKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELI 557
+ S + L+ C K A + + + LKP TY LI
Sbjct: 269 S-QSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMIMK-GLKPDKFTYTTLI 318
Score = 49.3 bits (116), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 47/196 (23%), Positives = 80/196 (40%), Gaps = 13/196 (6%)
Query: 401 ENGNVLTDAMLN-----------SVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKI 449
++ NVL D ML+ +++ GR+ +I K M + +
Sbjct: 223 DDANVLFDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTL 282
Query: 450 AFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEG 509
+ L G +A + +D M G + +LI G+C GDL+ A + ++M+ KE
Sbjct: 283 IYGLCKKGDLKQAQDLIDEMIMKGLKPDKFTYTTLIDGNCKEGDLETAFEYRKRMI-KEN 341
Query: 510 TSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDA 569
A L++ C + R++DA K + + LKP TY +I +
Sbjct: 342 IRLDDVAYTALISGLCQEGRSVDAEKMLREML-SVGLKPEIGTYTMIINEFCKKGDVWXG 400
Query: 570 LSLLCLMKDHGFPPFV 585
LL M+ G+ P V
Sbjct: 401 SKLLKEMQRDGYKPSV 416
>gi|223635748|sp|Q9LVQ5.2|PP432_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g55840
Length = 1096
Score = 56.2 bits (134), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 80/349 (22%), Positives = 138/349 (39%), Gaps = 42/349 (12%)
Query: 300 DESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLY 359
D +++N + +VL E ++ ++ +M GY + T VL + ++ K A++L
Sbjct: 192 DVATFNILINVLCAEGSFEKSSYLMQKMEKSGYAPTIVTYNTVLHWYCKKGRFKAAIELL 251
Query: 360 EFAMACKNKPSVNCCTF--LLRKIVVSKQL--------DMR---------LFSKVVRVFR 400
+ M K + + CT+ L+ + S ++ DMR ++ ++ F
Sbjct: 252 DH-MKSKGVDA-DVCTYNMLIHDLCRSNRIAKGYLLLRDMRKRMIHPNEVTYNTLINGFS 309
Query: 401 ENGNVLTDAML----------------NSVLKALISVGRMGECNKILKAMEEGGFIASSN 444
G VL + L N+++ IS G E K+ ME G S
Sbjct: 310 NEGKVLIASQLLNEMLSFGLSPNHVTFNALIDGHISEGNFKEALKMFYMMEAKGLTPSEV 369
Query: 445 MKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKM 504
+ L + D A F M+ +G VG + +I G C G LD+A +M
Sbjct: 370 SYGVLLDGLCKNAEFDLARGFYMRMKRNGVCVGRITYTGMIDGLCKNGFLDEAVVLLNEM 429
Query: 505 VEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQR 564
K+G L+N +C R A + V R L P Y LI N
Sbjct: 430 -SKDGIDPDIVTYSALINGFCKVGRFKTAKEIVCRIYR-VGLSPNGIIYSTLIYNCCRMG 487
Query: 565 GFKDALSLL--CLMKDHGFPPFV-DPFIKYVSKSGTSDDAIAFLKGMTS 610
K+A+ + +++ H F + + + K+G +A F++ MTS
Sbjct: 488 CLKEAIRIYEAMILEGHTRDHFTFNVLVTSLCKAGKVAEAEEFMRCMTS 536
>gi|449520323|ref|XP_004167183.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
mitochondrial-like [Cucumis sativus]
Length = 605
Score = 56.2 bits (134), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 51/196 (26%), Positives = 83/196 (42%), Gaps = 6/196 (3%)
Query: 453 LSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSH 512
L GK EA + ++ M G + SLI+G C+ GDL+ A + F M K G
Sbjct: 322 LCKEGKVIEAKDLLEVMIQRGIVPNLLTYNSLIEGFCLVGDLNSARELFVSMPSK-GCEP 380
Query: 513 AGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSL 572
+L+N YC ++ +A K ++N + + +P TY L+ L DA L
Sbjct: 381 DVICYTVLINGYCKTSKVEEAMK-LYNGMLQVGKRPDVKTYGALLTGLFQGGKVGDAKKL 439
Query: 573 LCLMKDHGFPP---FVDPFIKYVSKSGTSDDAIAFLKGMTSKRFP-SMSVVLCLFAAFFQ 628
+MK +G P F+ + K+G +A+ + S + CL +
Sbjct: 440 FGVMKVYGIPGDLYIYGIFLNGLCKNGCLFEAMELFNKLKSYNIKLDIECFNCLIDGLCK 499
Query: 629 ARRHSEAQDLLSKCPR 644
A + A +L K P+
Sbjct: 500 AGKLETAWELFEKLPQ 515
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 72/352 (20%), Positives = 138/352 (39%), Gaps = 20/352 (5%)
Query: 302 SSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEF 361
SS+ + S L + + + + ++MR G + T +L N V E + +
Sbjct: 97 SSFTHLLSGLAKIKHYSQVFYLYNQMRLSGISPDCCTLNILLNCLCNVNRVGEGLAVMAG 156
Query: 362 AMACKNKPSVNCCTFLLRKIVVSKQLD--MRLFSKVVRVFRENGNVLTDAMLNSVLKALI 419
+ P + T L++ + + ++ LF+++ ++ G +++K L
Sbjct: 157 ILRRGYIPDIVTYTTLIKGLCMEHRISKAALLFTRMQKL----GCTPNAITYGTLMKGLC 212
Query: 420 SVGRMGECNKILKAMEEGGFIASSNMK------SKIAFRLSSAGKKDEANEFMDHMEASG 473
G + K+ + M + N K S I L ++DEA + + M+ G
Sbjct: 213 RTGNISIALKLHQEMLNDSSLYGINFKPVVISYSIIIDALCKDRREDEARDLFEEMKVQG 272
Query: 474 SDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDA 533
+ SLI G C G ++A F +MV +G ++L++ C + + I+A
Sbjct: 273 MTPTVISYTSLIHGFCCGGKWEEAKRLFNEMVN-QGVQPNVVTFNVLIDVLCKEGKVIEA 331
Query: 534 CKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPFIKYVS 593
K + + + + P TY LI+ + A L M G P V + ++
Sbjct: 332 -KDLLEVMIQRGIVPNLLTYNSLIEGFCLVGDLNSARELFVSMPSKGCEPDVICYTVLIN 390
Query: 594 ---KSGTSDDAIAFLKGM--TSKRFPSMSVVLCLFAAFFQARRHSEAQDLLS 640
K+ ++A+ GM KR P + L FQ + +A+ L
Sbjct: 391 GYCKTSKVEEAMKLYNGMLQVGKR-PDVKTYGALLTGLFQGGKVGDAKKLFG 441
Score = 48.5 bits (114), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 53/282 (18%), Positives = 121/282 (42%), Gaps = 8/282 (2%)
Query: 297 VKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAV 356
V+ + ++N + VL +E + +L+ M +G + T ++ F + A
Sbjct: 308 VQPNVVTFNVLIDVLCKEGKVIEAKDLLEVMIQRGIVPNLLTYNSLIEGFCLVGDLNSAR 367
Query: 357 DLYEFAMACKNKPSVNCCTFLLRKIVVSKQLD--MRLFSKVVRVFRENGNVLTDAMLNSV 414
+L+ + +P V C T L+ + +++ M+L++ +++V + A+L +
Sbjct: 368 ELFVSMPSKGCEPDVICYTVLINGYCKTSKVEEAMKLYNGMLQVGKRPDVKTYGALLTGL 427
Query: 415 LKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGS 474
+ G++G+ K+ M+ G + L G EA E + +++
Sbjct: 428 FQG----GKVGDAKKLFGVMKVYGIPGDLYIYGIFLNGLCKNGCLFEAMELFNKLKSYNI 483
Query: 475 DVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDAC 534
+ + + LI G C AG L+ A + F+K+ ++E +++++ +C + + A
Sbjct: 484 KLDIECFNCLIDGLCKAGKLETAWELFEKLPQEELQPDV-VTYNIMIHEFCRGGQVVKA- 541
Query: 535 KFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLM 576
+ + + P TY LI+ + + + LL +M
Sbjct: 542 NILFQKMEKNGCTPDKITYATLIRGFFESKKLEKVVELLHMM 583
>gi|15219049|ref|NP_175673.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75207559|sp|Q9SSR6.1|PPR78_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g52640, mitochondrial; Flags: Precursor
gi|5903042|gb|AAD55601.1|AC008016_11 Contains 2 PF|01535 DUF domains [Arabidopsis thaliana]
gi|45773940|gb|AAS76774.1| At1g52640 [Arabidopsis thaliana]
gi|62320530|dbj|BAD95108.1| hypothetical protein [Arabidopsis thaliana]
gi|332194712|gb|AEE32833.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 523
Score = 56.2 bits (134), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 72/333 (21%), Positives = 116/333 (34%), Gaps = 40/333 (12%)
Query: 252 DDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVL 311
DD+E L + S++LV+ V+ + + A FF WA H SY+ + +L
Sbjct: 53 DDLEHTLVAYSPRVSSNLVEQVLKRCKNLGFPAHRFFLWARRIPDFAHSLESYHILVEIL 112
Query: 312 GREDCIDRFWKVLDEMRSKGY-EMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPS 370
G W L E R Y E+ + V +S N+ EA + + KP
Sbjct: 113 GSSKQFALLWDFLIEAREYNYFEISSKVFWIVFRAYSRANLPSEACRAFNRMVEFGIKPC 172
Query: 371 VNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKI 430
V+ L+ +L +L + +
Sbjct: 173 VD-------------------------------------DLDQLLHSLCDKKHVNHAQEF 195
Query: 431 LKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCV 490
+ G + S+ S + + A + D M V + +L+ C
Sbjct: 196 FGKAKGFGIVPSAKTYSILVRGWARIRDASGARKVFDEMLERNCVVDLLAYNALLDALCK 255
Query: 491 AGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWH 550
+GD+D FQ+M G Y+ + ++ YC A K V + ++ YDL P
Sbjct: 256 SGDVDGGYKMFQEM-GNLGLKPDAYSFAIFIHAYCDAGDVHSAYK-VLDRMKRYDLVPNV 313
Query: 551 TTYEELIKNLLVQRGFKDALSLLCLMKDHGFPP 583
T+ +IK L DA LL M G P
Sbjct: 314 YTFNHIIKTLCKNEKVDDAYLLLDEMIQKGANP 346
>gi|46091165|dbj|BAD13711.1| PPR protein [Oryza sativa Indica Group]
Length = 794
Score = 56.2 bits (134), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 94/431 (21%), Positives = 172/431 (39%), Gaps = 25/431 (5%)
Query: 166 TYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRNKMT--EKFEKEGLESDLEKLKG 223
+YN++L+ + QE L+ +M G V + T F KEG DL+K G
Sbjct: 164 SYNILLKGLCDDNRSQEALELLQMMPDDGGDCPPDVVSYTTVINGFFKEG---DLDKAYG 220
Query: 224 IFAT----GSIDNSI--EKVASRICKVVRSDIWGDDVERQLRD---LNVTFSNDLVKFVV 274
+ G + N + + + +CK D + + +++ N N +V
Sbjct: 221 TYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYC 280
Query: 275 DKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEM 334
+PK+A+ F + G V+ D +YN++ L + K+ D M +G +
Sbjct: 281 SS--GQPKEAIGFLKKMHSDG-VEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKP 337
Query: 335 EMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLD--MRLF 392
E+ T +L ++ + + E L + + P+ + L+ ++D M +F
Sbjct: 338 EITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVF 397
Query: 393 SKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFR 452
SK+ R+ G +V+ L GR+ + + + M + + + + +
Sbjct: 398 SKM----RQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHS 453
Query: 453 LSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSH 512
L K D+A E + M G + + S+I HC G + ++ F MV + G
Sbjct: 454 LCIFDKWDKAKELILEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMV-RIGVKP 512
Query: 513 AGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSL 572
L++ YC + +A K + + V +KP TY LI +DAL L
Sbjct: 513 DIITYSTLIDGYCLAGKMDEATKLLASMV-SVGMKPDCVTYNTLINGYCKISRMEDALVL 571
Query: 573 LCLMKDHGFPP 583
M+ G P
Sbjct: 572 FREMESSGVSP 582
Score = 47.0 bits (110), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 75/349 (21%), Positives = 139/349 (39%), Gaps = 17/349 (4%)
Query: 241 ICKVVRSDIWGDDVERQLRDL----NVTFSNDLVKFVVDKLGDEPKKALIFFRW-AEESG 295
+C R+ D V R++ L NV N L+K + D + ++AL + ++ G
Sbjct: 136 LCADKRTSDAMDIVLRRMTQLGCIPNVFSYNILLKGLCDD--NRSQEALELLQMMPDDGG 193
Query: 296 FVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEA 355
D SY + + +E +D+ + EM +G + T ++ + + +A
Sbjct: 194 DCPPDVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKA 253
Query: 356 VDLYEFAMACKNKPSVNCCTF--LLRKIVVSKQLDMRL-FSKVVRVFRENGNVLTDAMLN 412
+++ KN NC T+ ++ S Q + F K + +V+T N
Sbjct: 254 MEV--LTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVT---YN 308
Query: 413 SVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEAS 472
S++ L GR E K+ +M + G + ++ G E + +D M +
Sbjct: 309 SLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRN 368
Query: 473 GSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAID 532
G ++ LI + G +D+A F KM ++G + ++ C R D
Sbjct: 369 GIHPNHYVFSILICAYAKQGKVDQAMLVFSKM-RQQGLNPDTVTYGTVIGILCKSGRVED 427
Query: 533 ACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGF 581
A ++ + E L P + Y LI +L + + A L+ M D G
Sbjct: 428 AMRYFEQMIDE-RLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGI 475
>gi|15221300|ref|NP_177597.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75169839|sp|Q9CA58.1|PP120_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At1g74580
gi|12324819|gb|AAG52381.1|AC011765_33 hypothetical protein; 77097-79388 [Arabidopsis thaliana]
gi|332197491|gb|AEE35612.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 763
Score = 56.2 bits (134), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 75/312 (24%), Positives = 120/312 (38%), Gaps = 7/312 (2%)
Query: 274 VDKLGDEPKKAL-IFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSK-G 331
V K +P KAL +F +E GF KH S+Y ++ LG + +VL +MR G
Sbjct: 13 VIKCQKDPMKALEMFNSMRKEVGF-KHTLSTYRSVIEKLGYYGKFEAMEEVLVDMRENVG 71
Query: 332 YEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRL 391
M V + + + V+EAV+++E +P+V ++ +V S D
Sbjct: 72 NHMLEGVYVGAMKNYGRKGKVQEAVNVFERMDFYDCEPTVFSYNAIMSVLVDSGYFDQA- 130
Query: 392 FSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAF 451
KV R+ G +K+ R ++L M G + +
Sbjct: 131 -HKVYMRMRDRGITPDVYSFTIRMKSFCKTSRPHAALRLLNNMSSQGCEMNVVAYCTVVG 189
Query: 452 RLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTS 511
K E E M ASG + + L++ C GD+ + K++ K G
Sbjct: 190 GFYEENFKAEGYELFGKMLASGVSLCLSTFNKLLRVLCKKGDVKECEKLLDKVI-KRGVL 248
Query: 512 HAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALS 571
+ +L + C + A + V C+ E KP TY LI L F++A
Sbjct: 249 PNLFTYNLFIQGLCQRGELDGAVRMV-GCLIEQGPKPDVITYNNLIYGLCKNSKFQEAEV 307
Query: 572 LLCLMKDHGFPP 583
L M + G P
Sbjct: 308 YLGKMVNEGLEP 319
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 70/304 (23%), Positives = 119/304 (39%), Gaps = 4/304 (1%)
Query: 280 EPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETC 339
E +AL F A G +K + YN + L + I ++ +EM KG E++T
Sbjct: 371 ETNRALALFNEALGKG-IKPNVILYNTLIKGLSNQGMILEAAQLANEMSEKGLIPEVQTF 429
Query: 340 VKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVF 399
++ + V +A L + ++ P + L+ S QL M +++ V
Sbjct: 430 NILVNGLCKMGCVSDADGLVKVMISKGYFPDIFTFNILIHG--YSTQLKMENALEILDVM 487
Query: 400 RENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKK 459
+NG NS+L L + + + K M E G + + + L K
Sbjct: 488 LDNGVDPDVYTYNSLLNGLCKTSKFEDVMETYKTMVEKGCAPNLFTFNILLESLCRYRKL 547
Query: 460 DEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDL 519
DEA ++ M+ + + +LI G C GDLD A F+KM E S + ++
Sbjct: 548 DEALGLLEEMKNKSVNPDAVTFGTLIDGFCKNGDLDGAYTLFRKMEEAYKVSSSTPTYNI 607
Query: 520 LVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDH 579
+++ + K A K V + L P TY ++ L M ++
Sbjct: 608 IIHAFTEKLNVTMAEKLFQEMV-DRCLGPDGYTYRLMVDGFCKTGNVNLGYKFLLEMMEN 666
Query: 580 GFPP 583
GF P
Sbjct: 667 GFIP 670
Score = 53.5 bits (127), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 73/328 (22%), Positives = 128/328 (39%), Gaps = 18/328 (5%)
Query: 321 WKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRK 380
++L+ M S+G EM + V+G F E N E +L+ +A ++ LLR
Sbjct: 166 LRLLNNMSSQGCEMNVVAYCTVVGGFYEENFKAEGYELFGKMLASGVSLCLSTFNKLLR- 224
Query: 381 IVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFI 440
V+ K+ D++ K++ + G + N ++ L G + +++ + E G
Sbjct: 225 -VLCKKGDVKECEKLLDKVIKRGVLPNLFTYNLFIQGLCQRGELDGAVRMVGCLIEQGPK 283
Query: 441 ASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAA-- 498
+ + + L K EA ++ M G + + +LI G+C G + A
Sbjct: 284 PDVITYNNLIYGLCKNSKFQEAEVYLGKMVNEGLEPDSYTYNTLIAGYCKGGMVQLAERI 343
Query: 499 ---DCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEE 555
F V + T + L++ C + A + + + +KP Y
Sbjct: 344 VGDAVFNGFVPDQFTYRS------LIDGLCHEGETNRALALFNEALGK-GIKPNVILYNT 396
Query: 556 LIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPF---IKYVSKSGTSDDAIAFLKGMTSK- 611
LIK L Q +A L M + G P V F + + K G DA +K M SK
Sbjct: 397 LIKGLSNQGMILEAAQLANEMSEKGLIPEVQTFNILVNGLCKMGCVSDADGLVKVMISKG 456
Query: 612 RFPSMSVVLCLFAAFFQARRHSEAQDLL 639
FP + L + + A ++L
Sbjct: 457 YFPDIFTFNILIHGYSTQLKMENALEIL 484
Score = 42.0 bits (97), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 71/396 (17%), Positives = 160/396 (40%), Gaps = 36/396 (9%)
Query: 162 LSSKTYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRNKMTEKFEKEGLESDLEKL 221
L T+N +LR++ G V+E L+D + K+G + N T +
Sbjct: 214 LCLSTFNKLLRVLCKKGDVKECEKLLDKVIKRGV-----LPNLFTYNL----------FI 258
Query: 222 KGIFATGSIDNSIEKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEP 281
+G+ G +D ++ V I + + D+ +T++N + + +
Sbjct: 259 QGLCQRGELDGAVRMVGCLIEQGPKPDV-------------ITYNNLIYGLCKN---SKF 302
Query: 282 KKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVK 341
++A ++ G ++ D +YN + + + + +++ + G+ + T
Sbjct: 303 QEAEVYLGKMVNEG-LEPDSYTYNTLIAGYCKGGMVQLAERIVGDAVFNGFVPDQFTYRS 361
Query: 342 VLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRE 401
++ A+ L+ A+ KP+V L++ + S Q + +++ E
Sbjct: 362 LIDGLCHEGETNRALALFNEALGKGIKPNVILYNTLIKGL--SNQGMILEAAQLANEMSE 419
Query: 402 NGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDE 461
G + N ++ L +G + + + ++K M G+ + + S+ K +
Sbjct: 420 KGLIPEVQTFNILVNGLCKMGCVSDADGLVKVMISKGYFPDIFTFNILIHGYSTQLKMEN 479
Query: 462 ANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLV 521
A E +D M +G D + SL+ G C + + ++ MVEK G + + ++L+
Sbjct: 480 ALEILDVMLDNGVDPDVYTYNSLLNGLCKTSKFEDVMETYKTMVEK-GCAPNLFTFNILL 538
Query: 522 NTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELI 557
+ C + R +D + ++ + P T+ LI
Sbjct: 539 ESLC-RYRKLDEALGLLEEMKNKSVNPDAVTFGTLI 573
>gi|242093812|ref|XP_002437396.1| hypothetical protein SORBIDRAFT_10g026180 [Sorghum bicolor]
gi|241915619|gb|EER88763.1| hypothetical protein SORBIDRAFT_10g026180 [Sorghum bicolor]
Length = 786
Score = 56.2 bits (134), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 102/511 (19%), Positives = 198/511 (38%), Gaps = 26/511 (5%)
Query: 145 DEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRNK 204
DEA FF L+ TYN +L++ G G E ++ M++ G + N+
Sbjct: 261 DEAVAFFE-DLKARGHTPCVVTYNALLQVFGKAGNYTEALRVLKEMEQDGCQPDAVTYNE 319
Query: 205 MTEKFEKEGLESDLEKL------KGIFATGSIDNSIEKVASRICKVVRSDIWGDDVERQL 258
+ + + G + K KG+ N++ I KV + D +++
Sbjct: 320 LAGTYARAGFYEEAAKCLDTMTSKGLLPNAFTYNTVMTAYGNIGKVDEALALFDQMKKSG 379
Query: 259 RDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEES-GFVKHDESSYNAMASVLGREDCI 317
NV N F++ LG + + ++ E S + ++N M +V G+
Sbjct: 380 CVPNVNTYN----FILGMLGKKSRFTVMLEMLGEMSRSGCTPNRVTWNTMLAVCGKRGME 435
Query: 318 DRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFL 377
D +VL+ M+S G E+ +T ++ + A +Y + P + L
Sbjct: 436 DYVTRVLEGMKSCGVELSRDTYNTLIAAYGRCGSRTNAFKMYNEMTSAGFAPCLTTYNAL 495
Query: 378 LRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEG 437
L V+S+Q D +V R G D + +L+ G + + I K + G
Sbjct: 496 LN--VLSRQGDWSTAQSIVSKMRTKGFKPNDQSYSLLLQCYAKGGNIAGIDAIEKEVYGG 553
Query: 438 GFIASSNMKSKIA---FRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDL 494
S + + F+ G ++A ++A G + ++ S++ + G
Sbjct: 554 TVFPSWVILRTLVIANFKCRRLGGIEKA---FQEVKARGYNPDLVIFNSMLSMYAKNGMY 610
Query: 495 DKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYE 554
K + F +++ G S + L++ Y + + +A K + N ++ +KP +Y
Sbjct: 611 SKVTEIFDS-IKQSGLSPDLITYNSLMDMYAKCSESWEAEKIL-NQLKSSQVKPDVVSYN 668
Query: 555 ELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPFIKYVSKSGTSD---DAIAFLKGMTSK 611
+I Q K+A +L M G P V + V + + +A + M
Sbjct: 669 TVINGFCKQGLIKEAQRILSEMIADGMAPCVVTYHTLVGGYASLEMFSEAREVINYMIQH 728
Query: 612 RFPSMSVVL-CLFAAFFQARRHSEAQDLLSK 641
M + + ++ +A+R EA+ LS+
Sbjct: 729 NLKPMELTYRRVVDSYCKAKRFEEARSFLSE 759
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 101/485 (20%), Positives = 192/485 (39%), Gaps = 45/485 (9%)
Query: 121 LELSGVVFTHEMVLKVLKNLES---SPDE----------ARRFFNWVLEKESERLSSK-- 165
L++ G + L+VLK +E PD AR F K + ++SK
Sbjct: 286 LQVFGKAGNYTEALRVLKEMEQDGCQPDAVTYNELAGTYARAGFYEEAAKCLDTMTSKGL 345
Query: 166 -----TYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRNKMTEKF------EKEGL 214
TYN ++ G G V E L D MKK G V N T F +K
Sbjct: 346 LPNAFTYNTVMTAYGNIGKVDEALALFDQMKKSGC-----VPNVNTYNFILGMLGKKSRF 400
Query: 215 ESDLEKLKGIFATGSIDNSIE-KVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFV 273
LE L + +G N + +C + + V ++ V S D +
Sbjct: 401 TVMLEMLGEMSRSGCTPNRVTWNTMLAVCGKRGMEDYVTRVLEGMKSCGVELSRDTYNTL 460
Query: 274 VDKLGDEPKKALIFFRWAE--ESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKG 331
+ G + F + E +GF ++YNA+ +VL R+ ++ +MR+KG
Sbjct: 461 IAAYGRCGSRTNAFKMYNEMTSAGFAPC-LTTYNALLNVLSRQGDWSTAQSIVSKMRTKG 519
Query: 332 YEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRL 391
++ ++ +L +++ + +D E + +V +LR +V++ R
Sbjct: 520 FKPNDQSYSLLLQCYAKGGNIA-GIDAIEKEVYGG---TVFPSWVILRTLVIA-NFKCRR 574
Query: 392 FSKVVRVFRE---NGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSK 448
+ + F+E G + NS+L G + +I ++++ G +
Sbjct: 575 LGGIEKAFQEVKARGYNPDLVIFNSMLSMYAKNGMYSKVTEIFDSIKQSGLSPDLITYNS 634
Query: 449 IAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKE 508
+ + + EA + ++ +++S + ++I G C G + +A +M+ +
Sbjct: 635 LMDMYAKCSESWEAEKILNQLKSSQVKPDVVSYNTVINGFCKQGLIKEAQRILSEMI-AD 693
Query: 509 GTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKD 568
G + LV Y S +A + V N + +++LKP TY ++ + + F++
Sbjct: 694 GMAPCVVTYHTLVGGYASLEMFSEA-REVINYMIQHNLKPMELTYRRVVDSYCKAKRFEE 752
Query: 569 ALSLL 573
A S L
Sbjct: 753 ARSFL 757
Score = 45.8 bits (107), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 73/335 (21%), Positives = 122/335 (36%), Gaps = 17/335 (5%)
Query: 284 ALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMR-SKGYEMEMETCVKV 342
AL RWA G D S+ + LGRE D +LDEM G +++ V
Sbjct: 122 ALALLRWAGAEG--AADASALEMVVRALGREGQHDAVCALLDEMPLPPGSRLDVRAYTTV 179
Query: 343 LGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDM-RLFSKVVRVF-- 399
L S + AV+L+ P T + +V+ M R + ++V +
Sbjct: 180 LHALSRAGRYERAVELFAELRRQGVAP-----TLVTYNVVLDVYGRMGRSWPRIVALLDE 234
Query: 400 -RENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGK 458
R G D ++V+ A G + E + ++ G + + AG
Sbjct: 235 MRAAGVEPDDFTASTVIAACCRDGLVDEAVAFFEDLKARGHTPCVVTYNALLQVFGKAGN 294
Query: 459 KDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAID 518
EA + ME G + L + AG ++AA C M K G + +
Sbjct: 295 YTEALRVLKEMEQDGCQPDAVTYNELAGTYARAGFYEEAAKCLDTMTSK-GLLPNAFTYN 353
Query: 519 LLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKD 578
++ Y + + +D + + +++ P TY ++ L + F L +L M
Sbjct: 354 TVMTAYGNIGK-VDEALALFDQMKKSGCVPNVNTYNFILGMLGKKSRFTVMLEMLGEMSR 412
Query: 579 HGFPP---FVDPFIKYVSKSGTSDDAIAFLKGMTS 610
G P + + K G D L+GM S
Sbjct: 413 SGCTPNRVTWNTMLAVCGKRGMEDYVTRVLEGMKS 447
Score = 40.4 bits (93), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 75/384 (19%), Positives = 143/384 (37%), Gaps = 13/384 (3%)
Query: 131 EMVLKVLKNLESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLVDVM 190
EMV++ L E D + + RL + Y +L + G + L +
Sbjct: 141 EMVVRALGR-EGQHDAVCALLDEMPLPPGSRLDVRAYTTVLHALSRAGRYERAVELFAEL 199
Query: 191 KKKG-------YGVASHVRNKMTEKFEKEGLESDLEKLKGIFATGSIDNSIEKVASRICK 243
+++G Y V V +M + + D + G+ +++ R
Sbjct: 200 RRQGVAPTLVTYNVVLDVYGRMGRSWPRIVALLDEMRAAGVEPDDFTASTVIAACCRDGL 259
Query: 244 VVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESS 303
V + + +D++ + V N L++ V K G+ +AL + E+ G + D +
Sbjct: 260 VDEAVAFFEDLKARGHTPCVVTYNALLQ-VFGKAGNY-TEALRVLKEMEQDG-CQPDAVT 316
Query: 304 YNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAM 363
YN +A R + K LD M SKG T V+ + V EA+ L++
Sbjct: 317 YNELAGTYARAGFYEEAAKCLDTMTSKGLLPNAFTYNTVMTAYGNIGKVDEALALFDQMK 376
Query: 364 ACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGR 423
P+VN F+L ++ K+ + +++ +G N++L G
Sbjct: 377 KSGCVPNVNTYNFILG--MLGKKSRFTVMLEMLGEMSRSGCTPNRVTWNTMLAVCGKRGM 434
Query: 424 MGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVS 483
++L+ M+ G S + + + G + A + + M ++G + +
Sbjct: 435 EDYVTRVLEGMKSCGVELSRDTYNTLIAAYGRCGSRTNAFKMYNEMTSAGFAPCLTTYNA 494
Query: 484 LIKGHCVAGDLDKAADCFQKMVEK 507
L+ GD A KM K
Sbjct: 495 LLNVLSRQGDWSTAQSIVSKMRTK 518
>gi|225445222|ref|XP_002280919.1| PREDICTED: pentatricopeptide repeat-containing protein At5g21222
[Vitis vinifera]
gi|297738818|emb|CBI28063.3| unnamed protein product [Vitis vinifera]
Length = 636
Score = 56.2 bits (134), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 92/440 (20%), Positives = 167/440 (37%), Gaps = 36/440 (8%)
Query: 144 PDEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRN 203
P EA+ FN + E E R + TY +L + + L+ ++K G S N
Sbjct: 87 PQEAQLIFNSLTE-EGHRPTLITYTTLLAALTRQKRFKSIPSLISKLEKNGLKPDSVFFN 145
Query: 204 KMTEKFEKEGLESDLEKLKGIFATGSIDNSIEKVASRICKVVRSDIWGDDVERQLRDLNV 263
M F + G ++++ IF K+ R CK S
Sbjct: 146 AMINAFSESG---NVKEAMKIF---------RKMKDRGCKPTTS---------------- 177
Query: 264 TFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKV 323
TF N L+K + P++ L + VK ++ ++N++ + I W V
Sbjct: 178 TF-NTLIKGYGN--AGMPEECLKLLDLMSQEENVKPNDRTFNSLIRAWCNKKRITEAWNV 234
Query: 324 LDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVV 383
+ +M + G + ++ T + +++ A + + P+ C ++
Sbjct: 235 VYKMAASGLQPDVVTYNTLARAYAQNGETSRAEGMILEMQNNRVMPNERTCGIIINGYC- 293
Query: 384 SKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASS 443
K+ M+ + + R G + NS++K + + ++ L MEE G
Sbjct: 294 -KEGKMKDALRFLYRMRNYGVHPNLVIFNSLIKGFLDITDTDGVDEALTLMEEFGVKPDV 352
Query: 444 NMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQK 503
S I SS G D+ E D M +G + + L KG+ AG+ +KA
Sbjct: 353 VTFSTIMNAWSSVGLMDKCQEIFDDMVKAGIEPDIHAFSILAKGYVRAGEPEKAESLLTA 412
Query: 504 MVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQ 563
M K G +++ +CS + ++ V+ + E + P T+E LI
Sbjct: 413 M-GKSGVQPNVVIFTTIISGWCSAGK-MEYASRVYEKMCEMGICPNLKTFETLIWGYGEA 470
Query: 564 RGFKDALSLLCLMKDHGFPP 583
+ + A LL +M+ G P
Sbjct: 471 KEPQKAEELLQIMEQKGVAP 490
Score = 44.7 bits (104), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 54/252 (21%), Positives = 97/252 (38%), Gaps = 7/252 (2%)
Query: 394 KVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRL 453
K+ R ++ G T + N+++K + G EC K+L M + + ++ R
Sbjct: 162 KIFRKMKDRGCKPTTSTFNTLIKGYGNAGMPEECLKLLDLMSQEENVKPNDRTFNSLIRA 221
Query: 454 SSAGKK-DEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSH 512
K+ EA + M ASG + +L + + G+ +A +M +
Sbjct: 222 WCNKKRITEAWNVVYKMAASGLQPDVVTYNTLARAYAQNGETSRAEGMILEMQNNRVMPN 281
Query: 513 AGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSL 572
+++N YC + + DA +F++ +R Y + P + LIK L
Sbjct: 282 E-RTCGIIINGYCKEGKMKDALRFLYR-MRNYGVHPNLVIFNSLIKGFLDITDTDGVDEA 339
Query: 573 LCLMKDHGFPPFVDPFIKYV---SKSGTSDDAIAFLKGMTSKRF-PSMSVVLCLFAAFFQ 628
L LM++ G P V F + S G D M P + L + +
Sbjct: 340 LTLMEEFGVKPDVVTFSTIMNAWSSVGLMDKCQEIFDDMVKAGIEPDIHAFSILAKGYVR 399
Query: 629 ARRHSEAQDLLS 640
A +A+ LL+
Sbjct: 400 AGEPEKAESLLT 411
Score = 39.7 bits (91), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 46/211 (21%), Positives = 80/211 (37%), Gaps = 4/211 (1%)
Query: 401 ENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKD 460
E G+ T ++L AL R ++ +E+ G S + + S +G
Sbjct: 99 EEGHRPTLITYTTLLAALTRQKRFKSIPSLISKLEKNGLKPDSVFFNAMINAFSESGNVK 158
Query: 461 EANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLL 520
EA + M+ G + +LIKG+ AG ++ M ++E + L
Sbjct: 159 EAMKIFRKMKDRGCKPTTSTFNTLIKGYGNAGMPEECLKLLDLMSQEENVKPNDRTFNSL 218
Query: 521 VNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHG 580
+ +C+K R +A V+ + L+P TY L + A ++ M+++
Sbjct: 219 IRAWCNKKRITEAWNVVYK-MAASGLQPDVVTYNTLARAYAQNGETSRAEGMILEMQNNR 277
Query: 581 FPP---FVDPFIKYVSKSGTSDDAIAFLKGM 608
P I K G DA+ FL M
Sbjct: 278 VMPNERTCGIIINGYCKEGKMKDALRFLYRM 308
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.321 0.135 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,966,555,050
Number of Sequences: 23463169
Number of extensions: 401700963
Number of successful extensions: 1048494
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 1133
Number of HSP's successfully gapped in prelim test: 2777
Number of HSP's that attempted gapping in prelim test: 1016999
Number of HSP's gapped (non-prelim): 19457
length of query: 671
length of database: 8,064,228,071
effective HSP length: 150
effective length of query: 521
effective length of database: 8,839,720,017
effective search space: 4605494128857
effective search space used: 4605494128857
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 80 (35.4 bits)