BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042546
(671 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3FYN|A Chain A, Crystal Structure From The Mobile Metagenome Of Cole
Harbour Salt Marsh: Integron Cassette Protein Hfx_cass3
Length = 176
Score = 30.0 bits (66), Expect = 4.5, Method: Composition-based stats.
Identities = 15/56 (26%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 277 LGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGY 332
+GD P + + +E+GF +++ A ++LG+ D + R W + + S GY
Sbjct: 31 IGDVPVLVRLXSEFYQEAGFALPHDAAIRAFKALLGKPD-LGRIWLIAEGTESVGY 85
>pdb|2V7X|A Chain A, X-Ray Crystal Structure Of 5'-Fluorodeoxyadenosine
Synthase S158a Mutant From Streptomyces Cattleya
Complexed With The Products, Fda And Met
pdb|2V7X|B Chain B, X-Ray Crystal Structure Of 5'-Fluorodeoxyadenosine
Synthase S158a Mutant From Streptomyces Cattleya
Complexed With The Products, Fda And Met
pdb|2V7X|C Chain C, X-Ray Crystal Structure Of 5'-Fluorodeoxyadenosine
Synthase S158a Mutant From Streptomyces Cattleya
Complexed With The Products, Fda And Met
Length = 299
Score = 29.6 bits (65), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 21/33 (63%)
Query: 587 PFIKYVSKSGTSDDAIAFLKGMTSKRFPSMSVV 619
P I ++S GT+DD++A KG+ P ++VV
Sbjct: 9 PIIAFMSDLGTTDDSVAQCKGLMYSICPDVTVV 41
>pdb|2V7T|A Chain A, X-Ray Crystal Structure Of 5'-Fluorodeoxyadenosine
Synthase S158g Mutant Complexed With
S-Adenosyl-L-Homocysteine And Chloride Ion
pdb|2V7T|B Chain B, X-Ray Crystal Structure Of 5'-Fluorodeoxyadenosine
Synthase S158g Mutant Complexed With
S-Adenosyl-L-Homocysteine And Chloride Ion
pdb|2V7T|C Chain C, X-Ray Crystal Structure Of 5'-Fluorodeoxyadenosine
Synthase S158g Mutant Complexed With
S-Adenosyl-L-Homocysteine And Chloride Ion
pdb|2V7U|A Chain A, X-Ray Crystal Structure Of 5'-Fluorodeoxyadenosine
Synthase S158g Mutant Complexed With
S-Adenosylmethionine And Chloride Ion
pdb|2V7U|B Chain B, X-Ray Crystal Structure Of 5'-Fluorodeoxyadenosine
Synthase S158g Mutant Complexed With
S-Adenosylmethionine And Chloride Ion
pdb|2V7U|C Chain C, X-Ray Crystal Structure Of 5'-Fluorodeoxyadenosine
Synthase S158g Mutant Complexed With
S-Adenosylmethionine And Chloride Ion
pdb|2V7W|A Chain A, X-Ray Crystal Structure Of 5'-Fluorodeoxyadenosine
Synthase S158g Mutant Complexed With
5'-Fluorodeoxyadenosin
pdb|2V7W|B Chain B, X-Ray Crystal Structure Of 5'-Fluorodeoxyadenosine
Synthase S158g Mutant Complexed With
5'-Fluorodeoxyadenosin
pdb|2V7W|C Chain C, X-Ray Crystal Structure Of 5'-Fluorodeoxyadenosine
Synthase S158g Mutant Complexed With
5'-Fluorodeoxyadenosin
Length = 299
Score = 29.6 bits (65), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 21/33 (63%)
Query: 587 PFIKYVSKSGTSDDAIAFLKGMTSKRFPSMSVV 619
P I ++S GT+DD++A KG+ P ++VV
Sbjct: 9 PIIAFMSDLGTTDDSVAQCKGLMYSICPDVTVV 41
>pdb|1RQP|A Chain A, Crystal Structure And Mechanism Of A Bacterial
Fluorinating Enzyme
pdb|1RQP|B Chain B, Crystal Structure And Mechanism Of A Bacterial
Fluorinating Enzyme
pdb|1RQP|C Chain C, Crystal Structure And Mechanism Of A Bacterial
Fluorinating Enzyme
pdb|2C2W|A Chain A, The Fluorinase From Streptomyces Cattleya Is Also A
Chlorinase. Structure Of 5'-Chloro-5'-Deoxyadenosine
Crystallised In The Fluorinase.
pdb|2C2W|B Chain B, The Fluorinase From Streptomyces Cattleya Is Also A
Chlorinase. Structure Of 5'-Chloro-5'-Deoxyadenosine
Crystallised In The Fluorinase.
pdb|2C2W|C Chain C, The Fluorinase From Streptomyces Cattleya Is Also A
Chlorinase. Structure Of 5'-Chloro-5'-Deoxyadenosine
Crystallised In The Fluorinase.
pdb|2C4U|A Chain A, Crystal Structure Of The Apo Form Of The 5'-Fluoro-5'-
Deoxyadenosine Synthase Enzyme From Streptomyces
Cattleya
pdb|2C4U|B Chain B, Crystal Structure Of The Apo Form Of The 5'-Fluoro-5'-
Deoxyadenosine Synthase Enzyme From Streptomyces
Cattleya
pdb|2C4U|C Chain C, Crystal Structure Of The Apo Form Of The 5'-Fluoro-5'-
Deoxyadenosine Synthase Enzyme From Streptomyces
Cattleya
pdb|2C4U|D Chain D, Crystal Structure Of The Apo Form Of The 5'-Fluoro-5'-
Deoxyadenosine Synthase Enzyme From Streptomyces
Cattleya
pdb|2C4U|E Chain E, Crystal Structure Of The Apo Form Of The 5'-Fluoro-5'-
Deoxyadenosine Synthase Enzyme From Streptomyces
Cattleya
pdb|2C4U|F Chain F, Crystal Structure Of The Apo Form Of The 5'-Fluoro-5'-
Deoxyadenosine Synthase Enzyme From Streptomyces
Cattleya
pdb|2C5H|C Chain C, X-Ray Crystal Structure Of 5'-Fluorodeoxyadenosine
Synthase From Streptomyces Cattleya Complexed With
2'deoxy-Adenosine
pdb|2CBX|A Chain A, X-Ray Crystal Structure Of 5'-Fluorodeoxyadenosine
Synthase From Streptomyces Cattleya Complexed With
Beta-D- Erythrofuranosyl-Adenosine
pdb|2CBX|B Chain B, X-Ray Crystal Structure Of 5'-Fluorodeoxyadenosine
Synthase From Streptomyces Cattleya Complexed With
Beta-D- Erythrofuranosyl-Adenosine
pdb|2CBX|C Chain C, X-Ray Crystal Structure Of 5'-Fluorodeoxyadenosine
Synthase From Streptomyces Cattleya Complexed With
Beta-D- Erythrofuranosyl-Adenosine
pdb|2C4T|A Chain A, X-Ray Crystal Structure Of 5'-Fluorodeoxyadenosine
Synthase From Streptomyces Cattleya Complexed With An
Inhibitor, An Analogue Of S-Adenosyl Methionine
pdb|2C4T|B Chain B, X-Ray Crystal Structure Of 5'-Fluorodeoxyadenosine
Synthase From Streptomyces Cattleya Complexed With An
Inhibitor, An Analogue Of S-Adenosyl Methionine
pdb|2C4T|C Chain C, X-Ray Crystal Structure Of 5'-Fluorodeoxyadenosine
Synthase From Streptomyces Cattleya Complexed With An
Inhibitor, An Analogue Of S-Adenosyl Methionine
pdb|2CC2|A Chain A, X-Ray Crystal Structure Of 5'-Fluorodeoxyadenosine
Synthase From Streptomyces Cattleya Complexed With
5'deoxyadenosine
pdb|2CC2|B Chain B, X-Ray Crystal Structure Of 5'-Fluorodeoxyadenosine
Synthase From Streptomyces Cattleya Complexed With
5'deoxyadenosine
pdb|2CC2|C Chain C, X-Ray Crystal Structure Of 5'-Fluorodeoxyadenosine
Synthase From Streptomyces Cattleya Complexed With
5'deoxyadenosine
pdb|2V7V|A Chain A, X-Ray Crystal Structure Of 5'-Fluorodeoxyadenosine
Synthase From Streptomyces Cattleya Complexed With
5'-Fluorodeoxyadenosine
pdb|2V7V|B Chain B, X-Ray Crystal Structure Of 5'-Fluorodeoxyadenosine
Synthase From Streptomyces Cattleya Complexed With
5'-Fluorodeoxyadenosine
pdb|2V7V|C Chain C, X-Ray Crystal Structure Of 5'-Fluorodeoxyadenosine
Synthase From Streptomyces Cattleya Complexed With
5'-Fluorodeoxyadenosine
pdb|2C5B|A Chain A, X-Ray Crystal Structure Of 5'-Fluorodeoxyadenosine
Synthase From Streptomyces Cattleya Complexed With
2'deoxy-5'deoxy- Fluoroadenosine.
pdb|2C5B|B Chain B, X-Ray Crystal Structure Of 5'-Fluorodeoxyadenosine
Synthase From Streptomyces Cattleya Complexed With
2'deoxy-5'deoxy- Fluoroadenosine.
pdb|2C5B|C Chain C, X-Ray Crystal Structure Of 5'-Fluorodeoxyadenosine
Synthase From Streptomyces Cattleya Complexed With
2'deoxy-5'deoxy- Fluoroadenosine.
pdb|2C5H|A Chain A, X-Ray Crystal Structure Of 5'-Fluorodeoxyadenosine
Synthase From Streptomyces Cattleya Complexed With
2'deoxy-Adenosine
pdb|2C5H|B Chain B, X-Ray Crystal Structure Of 5'-Fluorodeoxyadenosine
Synthase From Streptomyces Cattleya Complexed With
2'deoxy-Adenosine
Length = 299
Score = 29.6 bits (65), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 21/33 (63%)
Query: 587 PFIKYVSKSGTSDDAIAFLKGMTSKRFPSMSVV 619
P I ++S GT+DD++A KG+ P ++VV
Sbjct: 9 PIIAFMSDLGTTDDSVAQCKGLMYSICPDVTVV 41
>pdb|1RQR|A Chain A, Crystal Structure And Mechanism Of A Bacterial
Fluorinating Enzyme, Product Complex
pdb|1RQR|B Chain B, Crystal Structure And Mechanism Of A Bacterial
Fluorinating Enzyme, Product Complex
pdb|1RQR|C Chain C, Crystal Structure And Mechanism Of A Bacterial
Fluorinating Enzyme, Product Complex
Length = 299
Score = 29.3 bits (64), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 587 PFIKYVSKSGTSDDAIAFLKGMTSKRFPSMSVV 619
P I + S GT+DD++A KG+ P ++VV
Sbjct: 9 PIIAFXSDLGTTDDSVAQCKGLXYSICPDVTVV 41
>pdb|3MQP|A Chain A, Crystal Structure Of Human Bfl-1 In Complex With Noxa Bh3
Peptide, Northeast Structural Genomics Consortium Target
Hr2930
Length = 161
Score = 28.9 bits (63), Expect = 8.6, Method: Composition-based stats.
Identities = 28/93 (30%), Positives = 40/93 (43%), Gaps = 15/93 (16%)
Query: 135 KVLKNLES--------SPDEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLV------ 180
+V KNL+S S D AR FN V+EKE E + ++ I G++
Sbjct: 57 EVEKNLKSCLDNVNVVSVDTARTLFNQVMEKEFED-GIINWGRIVTIFAFEGILIKKLLR 115
Query: 181 QEFWGLVDVMKKKGYGVASHVRNKMTEKFEKEG 213
Q+ VD K+ Y VA + N E + G
Sbjct: 116 QQIAPDVDTYKEISYFVAEFIMNNTGEWIRQNG 148
>pdb|3I1H|A Chain A, Crystal Structure Of Human Bfl-1 In Complex With Bak Bh3
Peptide
Length = 161
Score = 28.9 bits (63), Expect = 8.6, Method: Composition-based stats.
Identities = 28/93 (30%), Positives = 40/93 (43%), Gaps = 15/93 (16%)
Query: 135 KVLKNLES--------SPDEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLV------ 180
+V KNL+S S D AR FN V+EKE E + ++ I G++
Sbjct: 57 EVEKNLKSCLDNVNVVSVDTARTLFNQVMEKEFED-GIINWGRIVTIFAFEGILIKKLLR 115
Query: 181 QEFWGLVDVMKKKGYGVASHVRNKMTEKFEKEG 213
Q+ VD K+ Y VA + N E + G
Sbjct: 116 QQIAPDVDTYKEISYFVAEFIMNNTGEWIRQNG 148
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.135 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,548,496
Number of Sequences: 62578
Number of extensions: 727291
Number of successful extensions: 1797
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 1786
Number of HSP's gapped (non-prelim): 18
length of query: 671
length of database: 14,973,337
effective HSP length: 105
effective length of query: 566
effective length of database: 8,402,647
effective search space: 4755898202
effective search space used: 4755898202
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)