BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042546
(671 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9M891|PP208_ARATH Pentatricopeptide repeat-containing protein At3g02490,
mitochondrial OS=Arabidopsis thaliana GN=At3g02490 PE=2
SV=1
Length = 665
Score = 669 bits (1725), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 341/672 (50%), Positives = 477/672 (70%), Gaps = 37/672 (5%)
Query: 1 MRHQWRFLLFRNYPRSSLQFTGSSYYFQVPFNPNLTLHESLHTLSSLLPTSSHTFYSRFS 60
MR+QWR LLFR+Y S F FQV N S + SS L + RF
Sbjct: 1 MRYQWRSLLFRSYRSSPRPFLSHHSRFQVISN-------STRSFSSFL-------HERFG 46
Query: 61 -RLPICYSRLINLIDPKNPNFRNPMICS----YSSEPAMEQKESDFTVVSDIFYKFSDVN 115
+ C L R+P+ S +SSE A+E+K TVV D+F + + +
Sbjct: 47 VQQRQCLFAL-----------RSPLASSVSRRFSSESAIEEKLPAETVVIDVFSRLNGKD 95
Query: 116 DISKQLELSGVVFTHEMVLKVLKNLESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVG 175
+I+K+L+ + VV +HE+ L+VL+ LESSPD A RFF W LE ++LSSK+YN MLRI G
Sbjct: 96 EITKELDSNDVVISHELALRVLRELESSPDVAGRFFKWGLEAYPQKLSSKSYNTMLRIFG 155
Query: 176 VHGLVQEFWGLVDVMKKKGYGVASHVRNKMTEKFEKEGLESDLEKLKGIFATGSIDNSIE 235
V+GLV EFW LVD MKKKG+GV+++VR+++ +KF+K+GLE+DLE+LK +FA+GS+DNS++
Sbjct: 156 VNGLVDEFWRLVDDMKKKGHGVSANVRDRVGDKFKKDGLENDLERLKELFASGSMDNSVD 215
Query: 236 KVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESG 295
KV +R+CK+V ++WG DVE+QLRDL + F +D+VK V++KL +P+KAL+FFRW +ESG
Sbjct: 216 KVCNRVCKIVMKEVWGADVEKQLRDLKLEFKSDVVKMVLEKLDVDPRKALLFFRWIDESG 275
Query: 296 FVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEA 355
KHDE +YNAMA VLG+E +DRF +++E+RS GYEMEMET V+V RF + M+KEA
Sbjct: 276 SFKHDEKTYNAMARVLGKEKFLDRFQHMIEEIRSAGYEMEMETYVRVSARFCQTKMIKEA 335
Query: 356 VDLYEFAMA--CKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNS 413
V+L+EFAMA N P+ +CC+ LL+KIV +K+LDM LF++ ++ + NGNV+ D ML
Sbjct: 336 VELFEFAMAGSISNTPTPHCCSLLLKKIVTAKKLDMDLFTRTLKAYTGNGNVVPDVMLQH 395
Query: 414 VLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASG 473
VLK+L SV R G+ N++LKAM EGG++ S +++S IA LS GKKDEANE ++ MEASG
Sbjct: 396 VLKSLRSVDRFGQSNEVLKAMNEGGYVPSGDLQSVIASGLSRKGKKDEANELVNFMEASG 455
Query: 474 SDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDA 533
+ + DK SL++GHC A DL++A++CF+KM+ KEG S+AGYA + LV YC+ +A D
Sbjct: 456 NHLDDKAMASLVEGHCDAKDLEEASECFKKMIGKEGVSYAGYAFEKLVLAYCNSFQARDV 515
Query: 534 CKFVHNCVREYDLKPWHTTYEELIKNLLVQR-----GFKDALSLLCLMKDHGFPPFVDPF 588
K V++ LKPWH+TY+ +++NLL+++ GF++ALSLL +M++HGFPPFVDPF
Sbjct: 516 YKLFSELVKQNQLKPWHSTYKIMVRNLLMKKVARDGGFEEALSLLPMMRNHGFPPFVDPF 575
Query: 589 IKYVSKSGTSDDAIAFLKGMTSKRFPSMSVVLCLFAAFFQARRHSEAQDLLSKCPRYVRN 648
+ Y+S SGTS +A AFLK +TSK+FPS S+VL +F A ++ RHSEAQDLLS P Y+R
Sbjct: 576 MDYLSNSGTSAEAFAFLKAVTSKKFPSNSMVLRVFEAMLKSARHSEAQDLLSMSPSYIRR 635
Query: 649 HADVLNLLYSKK 660
+A+VL L + K
Sbjct: 636 NAEVLELFNTMK 647
>sp|Q8LPF1|PP387_ARATH Pentatricopeptide repeat-containing protein At5g15980,
mitochondrial OS=Arabidopsis thaliana GN=At5g15980 PE=2
SV=1
Length = 668
Score = 642 bits (1655), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 332/669 (49%), Positives = 458/669 (68%), Gaps = 24/669 (3%)
Query: 1 MRHQ-WRFLLFRNYPRSSLQFTGSSYYFQVPFNPNLTLHESLHTLSSLLPTSSHTFYSRF 59
MR+Q WR +L R+Y RS L + S QV + + +H L S R
Sbjct: 1 MRYQQWRLMLLRSYHRSHLPYL--SPCSQVTSISSRSFSSFIHPGIGALQQSEQLCPLRS 58
Query: 60 SRLPICYSRLINLIDPKNPNFRNPMICSYSSEPAMEQKESDFTVVSDIFYKFSDVNDISK 119
P+ S N + S+SSEPA+E+K S V DIF + S ++I K
Sbjct: 59 ---PMTSS----------GNLVKSVGRSFSSEPAVEEKSSAEATVIDIFSRLSGEDEIRK 105
Query: 120 QLELSGVVFTHEMVLKVLKNLESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGL 179
+LE SGVV + ++ LKVL+ LES+PD A+ FF W+ E E LSSK YN+MLRI+G +GL
Sbjct: 106 ELESSGVVISQDLALKVLRKLESNPDVAKSFFQWIKEASPEELSSKNYNMMLRILGGNGL 165
Query: 180 VQEFWGLVDVMKKKGYGVASHVRNKMTEKFEKEGLESDLEKLKGIFATGSIDNSIEKVAS 239
V EFWGLVDVMKKKG+G++++VR+K+ +KF+K+GLESDL +L+ +F + +DNS E V
Sbjct: 166 VDEFWGLVDVMKKKGHGLSANVRDKVGDKFQKDGLESDLLRLRKLFTSDCLDNSAENVCD 225
Query: 240 RICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKH 299
R+CK+V + WGDDVE+++RDLNV F +DLVK +V++L EP+KAL+FFRW +ES KH
Sbjct: 226 RVCKIVMKEEWGDDVEKRVRDLNVEFKSDLVKMIVERLDVEPRKALLFFRWIDESDLFKH 285
Query: 300 DESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLY 359
DE +YNAMA VLG+E +DRF ++ EMRS GYE+E+ET V+V RF + ++KEAVDL+
Sbjct: 286 DEKTYNAMARVLGKEKFLDRFQNIVVEMRSAGYEVEIETYVRVSTRFCQTKLIKEAVDLF 345
Query: 360 EFAMA---CKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLK 416
E AMA N P+ +C LL+KIV +K LDM LFS+ V+V+ +NGN LTD++L SVLK
Sbjct: 346 EIAMAGSSSSNNPTPHCFCLLLKKIVTAKILDMDLFSRAVKVYTKNGNALTDSLLKSVLK 405
Query: 417 ALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDV 476
+L SV R+ + N++LK M+ GG++ S +M+S IA LS GKKDEA+EF+D ME+SG+++
Sbjct: 406 SLRSVDRVEQSNELLKEMKRGGYVPSGDMQSMIASSLSRKGKKDEADEFVDFMESSGNNL 465
Query: 477 GDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKF 536
DK SL++G+C +G+LD+A CF+KMV G S+A Y+ + LV YC+KN+ DA K
Sbjct: 466 DDKAMASLVEGYCDSGNLDEALVCFEKMVGNTGVSYADYSFEKLVLAYCNKNQVRDAYKL 525
Query: 537 VHNCVREYDLKPWHTTYEELIKNLLVQR-----GFKDALSLLCLMKDHGFPPFVDPFIKY 591
+ V + LKP H+TY+ L+ NLL ++ GF++ALSLL +MKDHGFPPF+DPF+ Y
Sbjct: 526 LSAQVTKNQLKPRHSTYKSLVTNLLTKKIARDGGFEEALSLLPIMKDHGFPPFIDPFMSY 585
Query: 592 VSKSGTSDDAIAFLKGMTSKRFPSMSVVLCLFAAFFQARRHSEAQDLLSKCPRYVRNHAD 651
S +G S +A+ FLK MTS FP +SVVL +F ++ RHSEAQDLLS CP Y+RN+ D
Sbjct: 586 FSSTGKSTEALGFLKAMTSNNFPYISVVLRVFETMMKSARHSEAQDLLSLCPNYIRNNPD 645
Query: 652 VLNLLYSKK 660
VL L + K
Sbjct: 646 VLELFNTMK 654
>sp|Q9STK5|PP269_ARATH Pentatricopeptide repeat-containing protein At3g48250,
chloroplastic OS=Arabidopsis thaliana GN=At3g48250 PE=2
SV=1
Length = 621
Score = 315 bits (807), Expect = 7e-85, Method: Compositional matrix adjust.
Identities = 180/549 (32%), Positives = 293/549 (53%), Gaps = 8/549 (1%)
Query: 115 NDISKQLELS----GVVFTHEMVLKVLKNLESSPDEARRFFNWVLEKESERLSSKTYNLM 170
ND SK++E + THE + VL+ LE P++A F +WVL S+ Y++M
Sbjct: 70 NDWSKEVEEGLRKPDMSLTHETAIYVLRKLEKYPEKAYYFLDWVLRDSGLSPSTPLYSIM 129
Query: 171 LRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRNKMTEKFEKEGLESDLEKLKGIFATGSI 230
LRI+ ++ FW + MK+ G+ + + + KE ++D + +
Sbjct: 130 LRILVQQRSMKRFWMTLREMKQGGFYLDEDTYKTIYGELSKEKSKADAVAVAHFYERMLK 189
Query: 231 DNSIEKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRW 290
+N++ VA + VV W +VER+L+++ + S++ V V+ +L + P KAL FF W
Sbjct: 190 ENAMSVVAGEVSAVVTKGDWSCEVERELQEMKLVLSDNFVIRVLKELREHPLKALAFFHW 249
Query: 291 AEESGFV---KHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFS 347
G +H +YNA VL R + + FW V+DEM++ GY+M+++T +KV +F
Sbjct: 250 VGGGGSSSGYQHSTVTYNAALRVLARPNSVAEFWSVVDEMKTAGYDMDLDTYIKVSRQFQ 309
Query: 348 ERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLT 407
+ M+ E V LYE+ M KPS+ C+ LLR + S D+ L +V R + G L+
Sbjct: 310 KSRMMAETVKLYEYMMDGPFKPSIQDCSLLLRYLSGSPNPDLDLVFRVSRKYESTGKSLS 369
Query: 408 DAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMD 467
A+ + + ++L SVGR E +I KAM G+ + S++ F L A + +EA +D
Sbjct: 370 KAVYDGIHRSLTSVGRFDEAEEITKAMRNAGYEPDNITYSQLVFGLCKAKRLEEARGVLD 429
Query: 468 HMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSK 527
MEA G K W LI+GHC +LDKA CF M+EK G +D+L++ +
Sbjct: 430 QMEAQGCFPDIKTWTILIQGHCKNNELDKALACFANMLEK-GFDIDSNLLDVLIDGFVIH 488
Query: 528 NRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDP 587
N+ A F+ V+ ++KPW +TY+ LI LL + ++AL LL +MK +P + +
Sbjct: 489 NKFEGASIFLMEMVKNANVKPWQSTYKLLIDKLLKIKKSEEALDLLQMMKKQNYPAYAEA 548
Query: 588 FIKYVSKSGTSDDAIAFLKGMTSKRFPSMSVVLCLFAAFFQARRHSEAQDLLSKCPRYVR 647
F Y++K GT +DA FL ++SK PS + + AF++ R ++A++LL CP + +
Sbjct: 549 FDGYLAKFGTLEDAKKFLDVLSSKDSPSFAAYFHVIEAFYREGRLTDAKNLLFICPHHFK 608
Query: 648 NHADVLNLL 656
H + L
Sbjct: 609 THPKISELF 617
Score = 58.5 bits (140), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/178 (23%), Positives = 80/178 (44%), Gaps = 4/178 (2%)
Query: 241 ICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHD 300
+ ++V + W +VE LR +++ +++ +V+ KL P+KA F W +
Sbjct: 63 MLQLVLENDWSKEVEEGLRKPDMSLTHETAIYVLRKLEKYPEKAYYFLDWVLRDSGLSPS 122
Query: 301 ESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYE 360
Y+ M +L ++ + RFW L EM+ G+ ++ +T + G S+ +AV +
Sbjct: 123 TPLYSIMLRILVQQRSMKRFWMTLREMKQGGFYLDEDTYKTIYGELSKEKSKADAVAVAH 182
Query: 361 FAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKAL 418
F + +++ + +V +V R +E VL+D + VLK L
Sbjct: 183 FYERMLKENAMSVVAGEVSAVVTKGDWS----CEVERELQEMKLVLSDNFVIRVLKEL 236
>sp|Q9M907|PP217_ARATH Pentatricopeptide repeat-containing protein At3g06920
OS=Arabidopsis thaliana GN=At3g06920 PE=2 SV=1
Length = 871
Score = 89.0 bits (219), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 90/403 (22%), Positives = 167/403 (41%), Gaps = 8/403 (1%)
Query: 236 KVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESG 295
+ + IC V+ + WG E L L+ + V V+ +L D +A+ +FRW E
Sbjct: 34 QTVNDICNVLETGPWGPSAENTLSALSFKPQPEFVIGVLRRLKD-VNRAIEYFRWYERRT 92
Query: 296 FVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEA 355
+ H SYN++ V+ R D ++L EM G+ + TC++++ + N ++E
Sbjct: 93 ELPHCPESYNSLLLVMARCRNFDALDQILGEMSVAGFGPSVNTCIEMVLGCVKANKLREG 152
Query: 356 VDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVL 415
D+ + K +P+ + T L+ DM L + + +E G T + +++
Sbjct: 153 YDVVQMMRKFKFRPAFSAYTTLIGAFSAVNHSDMML--TLFQQMQELGYEPTVHLFTTLI 210
Query: 416 KALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSD 475
+ GR+ +L M+ A + + GK D A +F +EA+G
Sbjct: 211 RGFAKEGRVDSALSLLDEMKSSSLDADIVLYNVCIDSFGKVGKVDMAWKFFHEIEANGLK 270
Query: 476 VGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACK 535
+ + S+I C A LD+A + F+ + EK YA + ++ Y S + +A
Sbjct: 271 PDEVTYTSMIGVLCKANRLDEAVEMFEHL-EKNRRVPCTYAYNTMIMGYGSAGKFDEAYS 329
Query: 536 FVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPF--VDPFIKYVS 593
+ R P Y ++ L +AL + MK P + I +
Sbjct: 330 LLER-QRAKGSIPSVIAYNCILTCLRKMGKVDEALKVFEEMKKDAAPNLSTYNILIDMLC 388
Query: 594 KSGTSDDAIAFLKGMT-SKRFPSMSVVLCLFAAFFQARRHSEA 635
++G D A M + FP++ V + ++++ EA
Sbjct: 389 RAGKLDTAFELRDSMQKAGLFPNVRTVNIMVDRLCKSQKLDEA 431
Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/209 (22%), Positives = 85/209 (40%), Gaps = 5/209 (2%)
Query: 400 RENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKK 459
+E G VL N V+ G++ + ++L+ M+ GF + + L+ +
Sbjct: 579 KEQGCVLDTRAYNIVIDGFCKCGKVNKAYQLLEEMKTKGFEPTVVTYGSVIDGLAKIDRL 638
Query: 460 DEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDL 519
DEA + ++ ++ ++ SLI G G +D+A +++++K G + Y +
Sbjct: 639 DEAYMLFEEAKSKRIELNVVIYSSLIDGFGKVGRIDEAYLILEELMQK-GLTPNLYTWNS 697
Query: 520 LVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDH 579
L++ K I+ ++E P TY LI L R F A M+
Sbjct: 698 LLDALV-KAEEINEALVCFQSMKELKCTPNQVTYGILINGLCKVRKFNKAFVFWQEMQKQ 756
Query: 580 GFPPFVDPFIKYVS---KSGTSDDAIAFL 605
G P + +S K+G +A A
Sbjct: 757 GMKPSTISYTTMISGLAKAGNIAEAGALF 785
Score = 43.1 bits (100), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 58/264 (21%), Positives = 109/264 (41%), Gaps = 18/264 (6%)
Query: 269 LVKFVVDKLGDEPK--KALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDE 326
L +D G K A FF E +G +K DE +Y +M VL + + +D ++ +
Sbjct: 240 LYNVCIDSFGKVGKVDMAWKFFHEIEANG-LKPDEVTYTSMIGVLCKANRLDEAVEMFEH 298
Query: 327 M-RSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSV---NCCTFLLRKIV 382
+ +++ ++G + EA L E A + PSV NC LRK
Sbjct: 299 LEKNRRVPCTYAYNTMIMG-YGSAGKFDEAYSLLERQRAKGSIPSVIAYNCILTCLRK-- 355
Query: 383 VSKQLDMRLFSKVVRVFRE--NGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFI 440
M + ++VF E + N ++ L G++ ++ +M++ G
Sbjct: 356 ------MGKVDEALKVFEEMKKDAAPNLSTYNILIDMLCRAGKLDTAFELRDSMQKAGLF 409
Query: 441 ASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADC 500
+ + + RL + K DEA + M+ + + SLI G G +D A
Sbjct: 410 PNVRTVNIMVDRLCKSQKLDEACAMFEEMDYKVCTPDEITFCSLIDGLGKVGRVDDAYKV 469
Query: 501 FQKMVEKEGTSHAGYAIDLLVNTY 524
++KM++ + +++ L+ N +
Sbjct: 470 YEKMLDSDCRTNSIVYTSLIKNFF 493
Score = 35.0 bits (79), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 53/269 (19%), Positives = 111/269 (41%), Gaps = 19/269 (7%)
Query: 101 FTVVSDIFYKFSDVNDISKQLE------LSGVVFTHEMVLKVLKNLESSPDEARRFFNWV 154
+ +V D F K VN + LE V T+ V+ L ++ DEA F
Sbjct: 590 YNIVIDGFCKCGKVNKAYQLLEEMKTKGFEPTVVTYGSVIDGLAKIDRL-DEAYMLFEEA 648
Query: 155 LEKESERLSSKTYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRNKMTEKFEK-EG 213
K E L+ Y+ ++ G G + E + +++ + +KG + N + + K E
Sbjct: 649 KSKRIE-LNVVIYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNLYTWNSLLDALVKAEE 707
Query: 214 LESDLEKLKGIFATGSIDNSIEK--VASRICKVVRSD----IWGDDVERQLRDLNVTFSN 267
+ L + + N + + + +CKV + + W + ++ ++ ++++
Sbjct: 708 INEALVCFQSMKELKCTPNQVTYGILINGLCKVRKFNKAFVFWQEMQKQGMKPSTISYTT 767
Query: 268 DLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEM 327
+ K G+ + +F R+ G D + YNAM L + + + +E
Sbjct: 768 MISGLA--KAGNIAEAGALFDRFKANGGV--PDSACYNAMIEGLSNGNRAMDAFSLFEET 823
Query: 328 RSKGYEMEMETCVKVLGRFSERNMVKEAV 356
R +G + +TCV +L + + +++A
Sbjct: 824 RRRGLPIHNKTCVVLLDTLHKNDCLEQAA 852
Score = 33.9 bits (76), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 36/186 (19%), Positives = 82/186 (44%), Gaps = 4/186 (2%)
Query: 303 SYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFA 362
+Y ++ L + D +D + + +E +SK E+ + ++ F + + EA + E
Sbjct: 624 TYGSVIDGLAKIDRLDEAYMLFEEAKSKRIELNVVIYSSLIDGFGKVGRIDEAYLILEEL 683
Query: 363 MACKNKPSVNCCTFLLRKIVVSKQLDMRLFS-KVVRVFRENGNVLTDAMLNSVLKALISV 421
M P++ LL +V +++++ L + ++ + N +T +L + L V
Sbjct: 684 MQKGLTPNLYTWNSLLDALVKAEEINEALVCFQSMKELKCTPNQVTYGIL---INGLCKV 740
Query: 422 GRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMW 481
+ + + M++ G S+ + + L+ AG EA D +A+G +
Sbjct: 741 RKFNKAFVFWQEMQKQGMKPSTISYTTMISGLAKAGNIAEAGALFDRFKANGGVPDSACY 800
Query: 482 VSLIKG 487
++I+G
Sbjct: 801 NAMIEG 806
>sp|Q9LZP3|PP293_ARATH Pentatricopeptide repeat-containing protein At3g62470,
mitochondrial OS=Arabidopsis thaliana GN=At3g62470 PE=2
SV=1
Length = 599
Score = 82.4 bits (202), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 117/509 (22%), Positives = 211/509 (41%), Gaps = 52/509 (10%)
Query: 159 SERLSSKTYNLMLRIVGVHGLVQEFWGLVDV-MKKKGYGV-ASHVRNKMTEKFEKEGLES 216
S + S TY+ +I H VQ L+D + +G+ +S+V + E+ E E
Sbjct: 59 SRMIHSSTYHPYRQIPLPHSSVQ----LLDASLGCRGFSSGSSNVSDGCDEEVESE---C 111
Query: 217 DLEKLKGIFATGSIDNSIEKVASRICKVVRSDIWGD-DVERQLRDLNVTFSNDLVKFVVD 275
D ++ G+ S N E R+CKV+ D ++E L ++ + S+DL+ V++
Sbjct: 112 DNDEETGVSCVESSTNPEE--VERVCKVIDELFALDRNMEAVLDEMKLDLSHDLIVEVLE 169
Query: 276 KLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEME 335
+ K A FF WA E HD +YN+M S+L + + VL+EM +KG +
Sbjct: 170 RFRHARKPAFRFFCWAAERQGFAHDSRTYNSMMSILAKTRQFETMVSVLEEMGTKGL-LT 228
Query: 336 METCVKVLGRFSERNMVKEAVDLYEFAMACKNK---PSVNCCTFLLRKIVVSKQLDMRLF 392
MET + F+ K+AV ++E K K ++NC L + + K+ + LF
Sbjct: 229 METFTIAMKAFAAAKERKKAVGIFELMKKYKFKIGVETINCLLDSLGRAKLGKEAQV-LF 287
Query: 393 SKVVRVFREN-----------------------GNVLTDAML-------NSVLKALISVG 422
K+ F N N + D L N +L+ L+
Sbjct: 288 DKLKERFTPNMMTYTVLLNGWCRVRNLIEAARIWNDMIDQGLKPDIVAHNVMLEGLLRSR 347
Query: 423 RMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWV 482
+ + K+ M+ G + + + + A E+ D M SG ++
Sbjct: 348 KKSDAIKLFHVMKSKGPCPNVRSYTIMIRDFCKQSSMETAIEYFDDMVDSGLQPDAAVYT 407
Query: 483 SLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVR 542
LI G LD + ++M EK G G + L+ ++ A + ++N +
Sbjct: 408 CLITGFGTQKKLDTVYELLKEMQEK-GHPPDGKTYNALIKLMANQKMPEHATR-IYNKMI 465
Query: 543 EYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPF---IKYVSKSGTSD 599
+ +++P T+ ++K+ + R ++ ++ M G P + + I+ + G S
Sbjct: 466 QNEIEPSIHTFNMIMKSYFMARNYEMGRAVWEEMIKKGICPDDNSYTVLIRGLIGEGKSR 525
Query: 600 DAIAFLKGMTSKRFPSMSVVLCLFAAFFQ 628
+A +L+ M K + + FAA F
Sbjct: 526 EACRYLEEMLDKGMKTPLIDYNKFAADFH 554
Score = 48.9 bits (115), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 80/455 (17%), Positives = 183/455 (40%), Gaps = 86/455 (18%)
Query: 95 EQKESDFTVVSDIFYKFSDVNDISKQLELSGVVFTHEMVLKVLKNLESSPDEARRFFNWV 154
E+ E V+ ++F ++ + +++L +H+++++VL+ + A RFF W
Sbjct: 129 EEVERVCKVIDELFALDRNMEAVLDEMKLD---LSHDLIVEVLERFRHARKPAFRFFCWA 185
Query: 155 LEKESERLSSKTYNLMLRIV----------------GVHGLV------------------ 180
E++ S+TYN M+ I+ G GL+
Sbjct: 186 AERQGFAHDSRTYNSMMSILAKTRQFETMVSVLEEMGTKGLLTMETFTIAMKAFAAAKER 245
Query: 181 QEFWGLVDVMKKKGYGVASHVRNKMTEKFEKEGLESD----LEKLKGIFATGSIDNSIEK 236
++ G+ ++MKK + + N + + + L + +KLK F + ++
Sbjct: 246 KKAVGIFELMKKYKFKIGVETINCLLDSLGRAKLGKEAQVLFDKLKERFTPNMMTYTV-- 303
Query: 237 VASRICKVVR----SDIWGDDVERQLRD------------LNVTFSNDLVKF--VVDKLG 278
+ + C+V + IW D +++ L+ L +D +K V+ G
Sbjct: 304 LLNGWCRVRNLIEAARIWNDMIDQGLKPDIVAHNVMLEGLLRSRKKSDAIKLFHVMKSKG 363
Query: 279 DEP------------------KKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRF 320
P + A+ +F +SG ++ D + Y + + G + +D
Sbjct: 364 PCPNVRSYTIMIRDFCKQSSMETAIEYFDDMVDSG-LQPDAAVYTCLITGFGTQKKLDTV 422
Query: 321 WKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRK 380
+++L EM+ KG+ + +T ++ + + M + A +Y + + +PS++ +++
Sbjct: 423 YELLKEMQEKGHPPDGKTYNALIKLMANQKMPEHATRIYNKMIQNEIEPSIHTFNMIMKS 482
Query: 381 IVVSKQLDM--RLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGG 438
+++ +M ++ ++++ G D +++ LI G+ E + L+ M + G
Sbjct: 483 YFMARNYEMGRAVWEEMIK----KGICPDDNSYTVLIRGLIGEGKSREACRYLEEMLDKG 538
Query: 439 FIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASG 473
+K A G+ + E + SG
Sbjct: 539 MKTPLIDYNKFAADFHRGGQPEIFEELAQRAKFSG 573
>sp|Q9FMF6|PP444_ARATH Pentatricopeptide repeat-containing protein At5g64320,
mitochondrial OS=Arabidopsis thaliana GN=At5g64320 PE=2
SV=1
Length = 730
Score = 81.6 bits (200), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 90/374 (24%), Positives = 158/374 (42%), Gaps = 22/374 (5%)
Query: 241 ICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHD 300
+CK+ R D D R + V F+ + FV D+ K L G V D
Sbjct: 332 LCKIGRVDAAKDLFYRIPKPEIVIFNTLIHGFVTHGRLDDAKAVL--SDMVTSYGIVP-D 388
Query: 301 ESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYE 360
+YN++ +E + +VL +MR+KG + + + ++ F + + EA ++
Sbjct: 389 VCTYNSLIYGYWKEGLVGLALEVLHDMRNKGCKPNVYSYTILVDGFCKLGKIDEAYNVLN 448
Query: 361 FAMACKNKPSV---NCCTFLLRKIVVSKQLDMRLFSKVVRVFRE---NGNVLTDAMLNSV 414
A KP+ NC ++S + V +FRE G NS+
Sbjct: 449 EMSADGLKPNTVGFNC--------LISAFCKEHRIPEAVEIFREMPRKGCKPDVYTFNSL 500
Query: 415 LKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGS 474
+ L V + +L+ M G +A++ + + G+ EA + ++ M GS
Sbjct: 501 ISGLCEVDEIKHALWLLRDMISEGVVANTVTYNTLINAFLRRGEIKEARKLVNEMVFQGS 560
Query: 475 DVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDAC 534
+ + + SLIKG C AG++DKA F+KM+ ++G + + + ++L+N C +A
Sbjct: 561 PLDEITYNSLIKGLCRAGEVDKARSLFEKML-RDGHAPSNISCNILINGLCRSGMVEEAV 619
Query: 535 KFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPF---IKY 591
+F V P T+ LI L +D L++ ++ G PP F + +
Sbjct: 620 EFQKEMVLRGS-TPDIVTFNSLINGLCRAGRIEDGLTMFRKLQAEGIPPDTVTFNTLMSW 678
Query: 592 VSKSGTSDDAIAFL 605
+ K G DA L
Sbjct: 679 LCKGGFVYDACLLL 692
Score = 64.3 bits (155), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 66/299 (22%), Positives = 128/299 (42%), Gaps = 11/299 (3%)
Query: 350 NMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDA 409
N K A +++ ++ K P++ +++ ++D L ++R ++G V
Sbjct: 196 NCHKVAANVFYDMLSRKIPPTLFTFGVVMKAFCAVNEIDSAL--SLLRDMTKHGCVPNSV 253
Query: 410 MLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHM 469
+ +++ +L R+ E ++L+ M G + + + + L + +EA + ++ M
Sbjct: 254 IYQTLIHSLSKCNRVNEALQLLEEMFLMGCVPDAETFNDVILGLCKFDRINEAAKMVNRM 313
Query: 470 EASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNR 529
G D + L+ G C G +D A D F ++ + E + L++ + + R
Sbjct: 314 LIRGFAPDDITYGYLMNGLCKIGRVDAAKDLFYRIPKPEIV-----IFNTLIHGFVTHGR 368
Query: 530 AIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPFI 589
DA + + V Y + P TY LI + AL +L M++ G P V +
Sbjct: 369 LDDAKAVLSDMVTSYGIVPDVCTYNSLIYGYWKEGLVGLALEVLHDMRNKGCKPNVYSYT 428
Query: 590 KYVS---KSGTSDDAIAFLKGMTSKRF-PSMSVVLCLFAAFFQARRHSEAQDLLSKCPR 644
V K G D+A L M++ P+ CL +AF + R EA ++ + PR
Sbjct: 429 ILVDGFCKLGKIDEAYNVLNEMSADGLKPNTVGFNCLISAFCKEHRIPEAVEIFREMPR 487
>sp|Q9LEQ7|PP382_ARATH Pentatricopeptide repeat-containing protein At5g14820,
mitochondrial OS=Arabidopsis thaliana GN=At5g14820 PE=2
SV=1
Length = 598
Score = 80.1 bits (196), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 101/451 (22%), Positives = 185/451 (41%), Gaps = 43/451 (9%)
Query: 215 ESDLEKLKGIFATGSIDNSIEKVASRICKVVRSDIWGD-DVERQLRDLNVTFSNDLVKFV 273
E D ++ G+ S N E R+CKV+ D ++E L ++ + S+DL+ V
Sbjct: 109 ECDNDEETGVSCVESSTNPEE--VERVCKVIDELFALDRNMEAVLDEMKLDLSHDLIVEV 166
Query: 274 VDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYE 333
+++ K A FF WA E HD +YN+M S+L + + VL+EM +KG
Sbjct: 167 LERFRHARKPAFRFFCWAAERQGFAHDSRTYNSMMSILAKTRQFETMVSVLEEMGTKGL- 225
Query: 334 MEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNK---PSVNCCTFLLRKIVVSKQLDMR 390
+ MET + F+ K+AV ++E K K ++NC L + + K+ +
Sbjct: 226 LTMETFTIAMKAFAAAKERKKAVGIFELMKKYKFKIGVETINCLLDSLGRAKLGKEAQV- 284
Query: 391 LFSKVVRVFREN--------------GNVLTDAML----------------NSVLKALIS 420
LF K+ F N N++ A + N +L+ L+
Sbjct: 285 LFDKLKERFTPNMMTYTVLLNGWCRVRNLIEAARIWNDMIDHGLKPDIVAHNVMLEGLLR 344
Query: 421 VGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKM 480
+ + K+ M+ G + + + + A E+ D M SG +
Sbjct: 345 SMKKSDAIKLFHVMKSKGPCPNVRSYTIMIRDFCKQSSMETAIEYFDDMVDSGLQPDAAV 404
Query: 481 WVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNC 540
+ LI G LD + ++M EK G G + L+ ++ + ++N
Sbjct: 405 YTCLITGFGTQKKLDTVYELLKEMQEK-GHPPDGKTYNALIKLMANQKMPEHGTR-IYNK 462
Query: 541 VREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPF---IKYVSKSGT 597
+ + +++P T+ ++K+ V R ++ ++ M G P + + I+ + G
Sbjct: 463 MIQNEIEPSIHTFNMIMKSYFVARNYEMGRAVWDEMIKKGICPDDNSYTVLIRGLISEGK 522
Query: 598 SDDAIAFLKGMTSKRFPSMSVVLCLFAAFFQ 628
S +A +L+ M K + + FAA F
Sbjct: 523 SREACRYLEEMLDKGMKTPLIDYNKFAADFH 553
Score = 51.6 bits (122), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 83/474 (17%), Positives = 188/474 (39%), Gaps = 89/474 (18%)
Query: 95 EQKESDFTVVSDIFYKFSDVNDISKQLELSGVVFTHEMVLKVLKNLESSPDEARRFFNWV 154
E+ E V+ ++F ++ + +++L +H+++++VL+ + A RFF W
Sbjct: 128 EEVERVCKVIDELFALDRNMEAVLDEMKLD---LSHDLIVEVLERFRHARKPAFRFFCWA 184
Query: 155 LEKESERLSSKTYNLMLRIV----------------GVHGLV------------------ 180
E++ S+TYN M+ I+ G GL+
Sbjct: 185 AERQGFAHDSRTYNSMMSILAKTRQFETMVSVLEEMGTKGLLTMETFTIAMKAFAAAKER 244
Query: 181 QEFWGLVDVMKKKGYGVASHVRNKMTEKFEKEGLESD----LEKLKGIFATGSIDNSIEK 236
++ G+ ++MKK + + N + + + L + +KLK F + ++
Sbjct: 245 KKAVGIFELMKKYKFKIGVETINCLLDSLGRAKLGKEAQVLFDKLKERFTPNMMTYTV-- 302
Query: 237 VASRICKVVR----SDIWGDDVERQLRD------------LNVTFSNDLVKF--VVDKLG 278
+ + C+V + IW D ++ L+ L +D +K V+ G
Sbjct: 303 LLNGWCRVRNLIEAARIWNDMIDHGLKPDIVAHNVMLEGLLRSMKKSDAIKLFHVMKSKG 362
Query: 279 DEP------------------KKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRF 320
P + A+ +F +SG ++ D + Y + + G + +D
Sbjct: 363 PCPNVRSYTIMIRDFCKQSSMETAIEYFDDMVDSG-LQPDAAVYTCLITGFGTQKKLDTV 421
Query: 321 WKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRK 380
+++L EM+ KG+ + +T ++ + + M + +Y + + +PS++ +++
Sbjct: 422 YELLKEMQEKGHPPDGKTYNALIKLMANQKMPEHGTRIYNKMIQNEIEPSIHTFNMIMKS 481
Query: 381 IVVSKQLDM--RLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGG 438
V++ +M ++ ++++ G D +++ LIS G+ E + L+ M + G
Sbjct: 482 YFVARNYEMGRAVWDEMIK----KGICPDDNSYTVLIRGLISEGKSREACRYLEEMLDKG 537
Query: 439 FIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKM---WVSLIKGHC 489
+K A G+ + E + SG ++ W + + C
Sbjct: 538 MKTPLIDYNKFAADFHRGGQPEIFEELAQRAKFSGKFAAAEIFARWAQMTRRRC 591
Score = 39.7 bits (91), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 34/145 (23%), Positives = 63/145 (43%), Gaps = 7/145 (4%)
Query: 501 FQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNL 560
F K+ E+ + Y + L+N +C I+A + ++ + ++ LKP + +++ L
Sbjct: 286 FDKLKERFTPNMMTYTV--LLNGWCRVRNLIEAARIWNDMI-DHGLKPDIVAHNVMLEGL 342
Query: 561 LVQRGFKDALSLLCLMKDHGFPPFVDPF---IKYVSKSGTSDDAIAFLKGMTSKRF-PSM 616
L DA+ L +MK G P V + I+ K + + AI + M P
Sbjct: 343 LRSMKKSDAIKLFHVMKSKGPCPNVRSYTIMIRDFCKQSSMETAIEYFDDMVDSGLQPDA 402
Query: 617 SVVLCLFAAFFQARRHSEAQDLLSK 641
+V CL F ++ +LL +
Sbjct: 403 AVYTCLITGFGTQKKLDTVYELLKE 427
>sp|Q3EAF8|PP294_ARATH Pentatricopeptide repeat-containing protein At3g62540,
mitochondrial OS=Arabidopsis thaliana GN=At3g62540 PE=2
SV=1
Length = 599
Score = 79.3 bits (194), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 115/509 (22%), Positives = 210/509 (41%), Gaps = 52/509 (10%)
Query: 159 SERLSSKTYNLMLRIVGVHGLVQEFWGLVDV-MKKKGYGV-ASHVRNKMTEKFEKEGLES 216
S + S TY+ +I H VQ L+D + +G+ +S+V + E+ E E
Sbjct: 59 SRMIHSSTYHPYRQIPLPHSSVQ----LLDASLGCRGFSSGSSNVSDGCDEEVESE---C 111
Query: 217 DLEKLKGIFATGSIDNSIEKVASRICKVVRSDIWGD-DVERQLRDLNVTFSNDLVKFVVD 275
D ++ G+ S N E R+CKV+ D ++E L ++ + S+DL+ V++
Sbjct: 112 DNDEETGVSCVESSTNPEE--VERVCKVIDELFALDRNMEAVLDEMKLDLSHDLIVEVLE 169
Query: 276 KLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEME 335
+ K A FF WA E H +YN+M S+L + + VL+EM +KG +
Sbjct: 170 RFRHARKPAFRFFCWAAERQGFAHASRTYNSMMSILAKTRQFETMVSVLEEMGTKGL-LT 228
Query: 336 METCVKVLGRFSERNMVKEAVDLYEFAMACKNK---PSVNCCTFLLRKIVVSKQLDMRLF 392
MET + F+ K+AV ++E K K ++NC L + + K+ + LF
Sbjct: 229 METFTIAMKAFAAAKERKKAVGIFELMKKYKFKIGVETINCLLDSLGRAKLGKEAQV-LF 287
Query: 393 SKVVRVFREN--------------GNVLTDAML----------------NSVLKALISVG 422
K+ F N N++ A + N +L+ L+
Sbjct: 288 DKLKERFTPNMMTYTVLLNGWCRVRNLIEAARIWNDMIDHGLKPDIVAHNVMLEGLLRSM 347
Query: 423 RMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWV 482
+ + K+ M+ G + + + + A E+ D M SG ++
Sbjct: 348 KKSDAIKLFHVMKSKGPCPNVRSYTIMIRDFCKQSSMETAIEYFDDMVDSGLQPDAAVYT 407
Query: 483 SLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVR 542
LI G LD + ++M EK G G + L+ ++ + ++N +
Sbjct: 408 CLITGFGTQKKLDTVYELLKEMQEK-GHPPDGKTYNALIKLMANQKMPEHGTR-IYNKMI 465
Query: 543 EYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPF---IKYVSKSGTSD 599
+ +++P T+ ++K+ V R ++ ++ M G P + + I+ + G S
Sbjct: 466 QNEIEPSIHTFNMIMKSYFVARNYEMGRAVWDEMIKKGICPDDNSYTVLIRGLISEGKSR 525
Query: 600 DAIAFLKGMTSKRFPSMSVVLCLFAAFFQ 628
+A +L+ M K + + FAA F
Sbjct: 526 EACRYLEEMLDKGMKTPLIDYNKFAADFH 554
Score = 52.4 bits (124), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 83/474 (17%), Positives = 189/474 (39%), Gaps = 89/474 (18%)
Query: 95 EQKESDFTVVSDIFYKFSDVNDISKQLELSGVVFTHEMVLKVLKNLESSPDEARRFFNWV 154
E+ E V+ ++F ++ + +++L +H+++++VL+ + A RFF W
Sbjct: 129 EEVERVCKVIDELFALDRNMEAVLDEMKLD---LSHDLIVEVLERFRHARKPAFRFFCWA 185
Query: 155 LEKESERLSSKTYNLMLRIV----------------GVHGLV------------------ 180
E++ +S+TYN M+ I+ G GL+
Sbjct: 186 AERQGFAHASRTYNSMMSILAKTRQFETMVSVLEEMGTKGLLTMETFTIAMKAFAAAKER 245
Query: 181 QEFWGLVDVMKKKGYGVASHVRNKMTEKFEKEGLESD----LEKLKGIFATGSIDNSIEK 236
++ G+ ++MKK + + N + + + L + +KLK F + ++
Sbjct: 246 KKAVGIFELMKKYKFKIGVETINCLLDSLGRAKLGKEAQVLFDKLKERFTPNMMTYTV-- 303
Query: 237 VASRICKVVR----SDIWGDDVERQLRD------------LNVTFSNDLVKF--VVDKLG 278
+ + C+V + IW D ++ L+ L +D +K V+ G
Sbjct: 304 LLNGWCRVRNLIEAARIWNDMIDHGLKPDIVAHNVMLEGLLRSMKKSDAIKLFHVMKSKG 363
Query: 279 DEP------------------KKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRF 320
P + A+ +F +SG ++ D + Y + + G + +D
Sbjct: 364 PCPNVRSYTIMIRDFCKQSSMETAIEYFDDMVDSG-LQPDAAVYTCLITGFGTQKKLDTV 422
Query: 321 WKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRK 380
+++L EM+ KG+ + +T ++ + + M + +Y + + +PS++ +++
Sbjct: 423 YELLKEMQEKGHPPDGKTYNALIKLMANQKMPEHGTRIYNKMIQNEIEPSIHTFNMIMKS 482
Query: 381 IVVSKQLDM--RLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGG 438
V++ +M ++ ++++ G D +++ LIS G+ E + L+ M + G
Sbjct: 483 YFVARNYEMGRAVWDEMIK----KGICPDDNSYTVLIRGLISEGKSREACRYLEEMLDKG 538
Query: 439 FIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKM---WVSLIKGHC 489
+K A G+ + E + SG ++ W + + C
Sbjct: 539 MKTPLIDYNKFAADFHRGGQPEIFEELAQRAKFSGKFAAAEIFARWAQMTRRRC 592
Score = 39.7 bits (91), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 34/143 (23%), Positives = 62/143 (43%), Gaps = 7/143 (4%)
Query: 501 FQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNL 560
F K+ E+ + Y + L+N +C I+A + ++ + ++ LKP + +++ L
Sbjct: 287 FDKLKERFTPNMMTYTV--LLNGWCRVRNLIEAARIWNDMI-DHGLKPDIVAHNVMLEGL 343
Query: 561 LVQRGFKDALSLLCLMKDHGFPPFVDPF---IKYVSKSGTSDDAIAFLKGMTSKRF-PSM 616
L DA+ L +MK G P V + I+ K + + AI + M P
Sbjct: 344 LRSMKKSDAIKLFHVMKSKGPCPNVRSYTIMIRDFCKQSSMETAIEYFDDMVDSGLQPDA 403
Query: 617 SVVLCLFAAFFQARRHSEAQDLL 639
+V CL F ++ +LL
Sbjct: 404 AVYTCLITGFGTQKKLDTVYELL 426
>sp|Q9C9A2|PP112_ARATH Pentatricopeptide repeat-containing protein At1g71060,
mitochondrial OS=Arabidopsis thaliana GN=At1g71060 PE=2
SV=1
Length = 510
Score = 77.4 bits (189), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 101/423 (23%), Positives = 173/423 (40%), Gaps = 16/423 (3%)
Query: 221 LKGIFATGSID-----NSIEKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVD 275
L G F S++ N + A RICK++ + VE L + +V S L++ V+
Sbjct: 44 LYGSFHASSVETQVSANDASQDAERICKIL-TKFTDSKVETLLNEASVKLSPALIEEVLK 102
Query: 276 KLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEME 335
KL + AL F+WAE KH S+YNA+ LG+ W ++D+M++K +
Sbjct: 103 KLSNAGVLALSVFKWAENQKGFKHTTSNYNALIESLGKIKQFKLIWSLVDDMKAKKL-LS 161
Query: 336 METCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLD--MRLFS 393
ET + R++ VKEA+ + K + +L + S+ + ++F
Sbjct: 162 KETFALISRRYARARKVKEAIGAFHKMEEFGFKMESSDFNRMLDTLSKSRNVGDAQKVFD 221
Query: 394 KVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRL 453
K+ + R ++ + +L +++ R+ E N + M++ GF I
Sbjct: 222 KMKKK-RFEPDIKSYTILLEGWGQELNLLRVDEVN---REMKDEGFEPDVVAYGIIINAH 277
Query: 454 SSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHA 513
A K +EA F + ME ++ SLI G L+ A + F++ + G
Sbjct: 278 CKAKKYEEAIRFFNEMEQRNCKPSPHIFCSLINGLGSEKKLNDALEFFER-SKSSGFPLE 336
Query: 514 GYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLL 573
+ LV YC R DA K V +R + P TY+ ++ +L+ + K+A +
Sbjct: 337 APTYNALVGAYCWSQRMEDAYKTVDE-MRLKGVGPNARTYDIILHHLIRMQRSKEAYEVY 395
Query: 574 CLMKDHGFPPFVDPFIKYVSKSGTSDDAIAFLKGMTSKR-FPSMSVVLCLFAAFFQARRH 632
M + ++ D AI M K P M + L A +
Sbjct: 396 QTMSCEPTVSTYEIMVRMFCNKERLDMAIKIWDEMKGKGVLPGMHMFSSLITALCHENKL 455
Query: 633 SEA 635
EA
Sbjct: 456 DEA 458
Score = 63.9 bits (154), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 96/459 (20%), Positives = 180/459 (39%), Gaps = 84/459 (18%)
Query: 87 SYSSEPAMEQKESDFTVVSDIFYKFSDVNDISKQLELSGVVFTHEMVLKVLKNLESSPDE 146
S ++ + D + I KF+D + + L + V + ++ +VLK L ++
Sbjct: 52 SVETQVSANDASQDAERICKILTKFTD-SKVETLLNEASVKLSPALIEEVLKKLSNAGVL 110
Query: 147 ARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLVDVMKKKG------------ 194
A F W ++ + ++ YN ++ +G + W LVD MK K
Sbjct: 111 ALSVFKWAENQKGFKHTTSNYNALIESLGKIKQFKLIWSLVDDMKAKKLLSKETFALISR 170
Query: 195 -YGVASHVRNKMT--EKFEKEGLE---SDLEKLKGIFATGSIDNSIEKVASRICK----- 243
Y A V+ + K E+ G + SD ++ + +KV ++ K
Sbjct: 171 RYARARKVKEAIGAFHKMEEFGFKMESSDFNRMLDTLSKSRNVGDAQKVFDKMKKKRFEP 230
Query: 244 -----VVRSDIWG--------DDVERQLRDLNVTFSNDLVKF------------------ 272
+ + WG D+V R+++D F D+V +
Sbjct: 231 DIKSYTILLEGWGQELNLLRVDEVNREMKDEG--FEPDVVAYGIIINAHCKAKKYEEAIR 288
Query: 273 -------------------VVDKLGDEPK--KALIFFRWAEESGFVKHDESSYNAMASVL 311
+++ LG E K AL FF ++ SGF + +YNA+
Sbjct: 289 FFNEMEQRNCKPSPHIFCSLINGLGSEKKLNDALEFFERSKSSGF-PLEAPTYNALVGAY 347
Query: 312 GREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSV 371
++ +K +DEMR KG T +L KEA ++Y+ M+C +P+V
Sbjct: 348 CWSQRMEDAYKTVDEMRLKGVGPNARTYDIILHHLIRMQRSKEAYEVYQ-TMSC--EPTV 404
Query: 372 NCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKIL 431
+ ++R ++LDM + K+ + G + M +S++ AL ++ E +
Sbjct: 405 STYEIMVRMFCNKERLDMAI--KIWDEMKGKGVLPGMHMFSSLITALCHENKLDEACEYF 462
Query: 432 KAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHME 470
M + G +M S++ L G+KD+ + + M+
Sbjct: 463 NEMLDVGIRPPGHMFSRLKQTLLDEGRKDKVTDLVVKMD 501
>sp|Q9ZUU3|PP190_ARATH Pentatricopeptide repeat-containing protein At2g37230
OS=Arabidopsis thaliana GN=At2g37230 PE=2 SV=1
Length = 757
Score = 77.0 bits (188), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 88/405 (21%), Positives = 164/405 (40%), Gaps = 47/405 (11%)
Query: 216 SDLEKLKGIFATGSIDNSIEKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVD 275
++ L+ F G N EK+ IC+++ + W ++ +RDL + + LV V+
Sbjct: 67 TETRPLRERFQRGKRQNH-EKLEDTICRMMDNRAWTTRLQNSIRDLVPEWDHSLVYNVLH 125
Query: 276 KLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEME 335
+ + AL FFRW E SG ++HD ++ M +LG ++ +L +M KG +
Sbjct: 126 G-AKKLEHALQFFRWTERSGLIRHDRDTHMKMIKMLGEVSKLNHARCILLDMPEKGVPWD 184
Query: 336 METCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKV 395
+ V ++ + + +V+E+V K+
Sbjct: 185 EDMFVVLIESYGKAGIVQESV-------------------------------------KI 207
Query: 396 VRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSS 455
+ ++ G T NS+ K ++ GR + M G + + + + +
Sbjct: 208 FQKMKDLGVERTIKSYNSLFKVILRRGRYMMAKRYFNKMVSEGVEPTRHTYNLMLWGFFL 267
Query: 456 AGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMV-EKEGTSHAG 514
+ + + A F + M+ G D + ++I G C +D+A F +M K G S
Sbjct: 268 SLRLETALRFFEDMKTRGISPDDATFNTMINGFCRFKKMDEAEKLFVEMKGNKIGPSVVS 327
Query: 515 YAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLL- 573
Y ++ Y + +R D + +R ++P TTY L+ L +A ++L
Sbjct: 328 YTT--MIKGYLAVDRVDDGLRIFEE-MRSSGIEPNATTYSTLLPGLCDAGKMVEAKNILK 384
Query: 574 CLMKDHGFPPFVDPFIKYV---SKSGTSDDAIAFLKGMTSKRFPS 615
+M H P F+K + SK+G A LK M + P+
Sbjct: 385 NMMAKHIAPKDNSIFLKLLVSQSKAGDMAAATEVLKAMATLNVPA 429
Score = 40.0 bits (92), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 66/292 (22%), Positives = 118/292 (40%), Gaps = 28/292 (9%)
Query: 303 SYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFA 362
SY M D +D ++ +EMRS G E T +L + + EA ++ +
Sbjct: 327 SYTTMIKGYLAVDRVDDGLRIFEEMRSSGIEPNATTYSTLLPGLCDAGKMVEAKNILKNM 386
Query: 363 MACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVL------- 415
MA P N FL + SK DM ++V++ NV +A VL
Sbjct: 387 MAKHIAPKDNSI-FLKLLVSQSKAGDMAAATEVLKAM-ATLNVPAEAGHYGVLIENQCKA 444
Query: 416 ----KALISVGRMGECNKILK-----AMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFM 466
+A+ + + E IL+ ME + + I L + G+ +A
Sbjct: 445 SAYNRAIKLLDTLIEKEIILRHQDTLEMEPSAY-------NPIIEYLCNNGQTAKAEVLF 497
Query: 467 DHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCS 526
+ G D + +LI+GH G+ D + + K++ + G A +LL+ +Y S
Sbjct: 498 RQLMKRGVQDQDAL-NNLIRGHAKEGNPDSSYEIL-KIMSRRGVPRESNAYELLIKSYMS 555
Query: 527 KNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKD 578
K DA + + V + + P + + +I++L + A ++ +M D
Sbjct: 556 KGEPGDAKTALDSMVEDGHV-PDSSLFRSVIESLFEDGRVQTASRVMMIMID 606
>sp|Q94JX6|PP391_ARATH Pentatricopeptide repeat-containing protein At5g18390,
mitochondrial OS=Arabidopsis thaliana GN=At5g18390 PE=2
SV=2
Length = 459
Score = 75.9 bits (185), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 90/392 (22%), Positives = 150/392 (38%), Gaps = 50/392 (12%)
Query: 239 SRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVK 298
+ + +VR +I ER L L + +++ V V+ +L FF WA +
Sbjct: 52 NHVVNIVRREI---HPERSLNSLRLPVTSEFVFRVLRATSRSSNDSLRFFNWARSNPSYT 108
Query: 299 HDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDL 358
Y +A L + WK+L +M+ ++ ET ++ ++ + V +AV+L
Sbjct: 109 PTSMEYEELAKSLASHKKYESMWKILKQMKDLSLDISGETLCFIIEQYGKNGHVDQAVEL 168
Query: 359 YEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKAL 418
+ P C + V V+ NS+L AL
Sbjct: 169 F------NGVPKTLGC------------------QQTVDVY------------NSLLHAL 192
Query: 419 ISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGD 478
V +++ M G + + SAGK EA EF+D M G +
Sbjct: 193 CDVKMFHGAYALIRRMIRKGLKPDKRTYAILVNGWCSAGKMKEAQEFLDEMSRRGFNPPA 252
Query: 479 KMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVH 538
+ LI+G AG L+ A + KM K G ++L+ SK+ ++ C ++
Sbjct: 253 RGRDLLIEGLLNAGYLESAKEMVSKMT-KGGFVPDIQTFNILIEA-ISKSGEVEFCIEMY 310
Query: 539 NCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLL--CLMKDH-GFPPFVDPFIKYVSKS 595
+ L TY+ LI + +A LL C+ H FP P IK + ++
Sbjct: 311 YTACKLGLCVDIDTYKTLIPAVSKIGKIDEAFRLLNNCVEDGHKPFPSLYAPIIKGMCRN 370
Query: 596 GTSDDAIAFLKGMTSKRFP------SMSVVLC 621
G DDA +F M K P +M + +C
Sbjct: 371 GMFDDAFSFFSDMKVKAHPPNRPVYTMLITMC 402
Score = 40.8 bits (94), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 24/108 (22%), Positives = 48/108 (44%), Gaps = 1/108 (0%)
Query: 129 THEMVLKVLKNLESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLVD 188
T E V +VL+ S +++ RFFNW S +S Y + + + H + W ++
Sbjct: 76 TSEFVFRVLRATSRSSNDSLRFFNWARSNPSYTPTSMEYEELAKSLASHKKYESMWKILK 135
Query: 189 VMKKKGYGVASHVRNKMTEKFEKEG-LESDLEKLKGIFATGSIDNSIE 235
MK ++ + E++ K G ++ +E G+ T +++
Sbjct: 136 QMKDLSLDISGETLCFIIEQYGKNGHVDQAVELFNGVPKTLGCQQTVD 183
>sp|Q9M1D8|PP288_ARATH Pentatricopeptide repeat-containing protein At3g60050
OS=Arabidopsis thaliana GN=At3g60050 PE=2 SV=1
Length = 473
Score = 75.1 bits (183), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 95/392 (24%), Positives = 161/392 (41%), Gaps = 28/392 (7%)
Query: 238 ASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVV---------DKLGDEPKKALIFF 288
ASR+ ++ D G + + L +LNV S LV+ V+ D K A FF
Sbjct: 77 ASRVLVTLQLDESGFNSKSVLDELNVRVSGLLVREVLVGILRNLSYDNKARCAKLAYRFF 136
Query: 289 RWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSE 348
W+ E +H +SY+ + + W+++DEM G+ T ++ E
Sbjct: 137 LWSGEQECFRHTVNSYHLLMKIFAECGEYKAMWRLVDEMVQDGFPTTARTFNLLICSCGE 196
Query: 349 RNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENG---NV 405
+ K+AV + + +P + +L ++ KQ +L V + E+G +V
Sbjct: 197 AGLAKQAVVQFMKSKTFNYRPFKHSYNAILNSLLGVKQ--YKLIEWVYKQMLEDGFSPDV 254
Query: 406 LTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEF 465
LT N +L +G+M +++ M GF S + + L K A
Sbjct: 255 LT---YNILLWTNYRLGKMDRFDRLFDEMARDGFSPDSYTYNILLHILGKGNKPLAALTT 311
Query: 466 MDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYC 525
++HM+ G D + +LI G AG+L+ +MV K G +++ Y
Sbjct: 312 LNHMKEVGIDPSVLHYTTLIDGLSRAGNLEACKYFLDEMV-KAGCRPDVVCYTVMITGYV 370
Query: 526 SKNRAIDACKFVHNCVREYDLK---PWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGF- 581
+D K RE +K P TY +I+ L + F++A LL M+ G
Sbjct: 371 VSGE-LDKAK---EMFREMTVKGQLPNVFTYNSMIRGLCMAGEFREACWLLKEMESRGCN 426
Query: 582 PPFV--DPFIKYVSKSGTSDDAIAFLKGMTSK 611
P FV + Y+ K+G +A ++ M K
Sbjct: 427 PNFVVYSTLVSYLRKAGKLSEARKVIREMVKK 458
Score = 65.9 bits (159), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 94/378 (24%), Positives = 165/378 (43%), Gaps = 37/378 (9%)
Query: 120 QLELSGVVFTHEMVLKVLKNLESSPDEAR------RFFNWVLEKESERLSSKTYNLMLRI 173
+ +SG++ E+++ +L+NL S ++AR RFF W E+E R + +Y+L+++I
Sbjct: 101 NVRVSGLL-VREVLVGILRNL-SYDNKARCAKLAYRFFLWSGEQECFRHTVNSYHLLMKI 158
Query: 174 VGVHGLVQEFWGLVDVMKKKGYGVASHVRNKMTEKFEKEGL--ESDLEKLKG-IFATGSI 230
G + W LVD M + G+ + N + + GL ++ ++ +K F
Sbjct: 159 FAECGEYKAMWRLVDEMVQDGFPTTARTFNLLICSCGEAGLAKQAVVQFMKSKTFNYRPF 218
Query: 231 DNSIEKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVV-----DKLGDEPKKAL 285
+S + + + V + + ++ L D FS D++ + + +LG +
Sbjct: 219 KHSYNAILNSLLGVKQYKLIEWVYKQMLED---GFSPDVLTYNILLWTNYRLGKMDRFDR 275
Query: 286 IFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYE---MEMETCVKV 342
+F A + GF D +YN + +LG+ + L+ M+ G + + T +
Sbjct: 276 LFDEMARD-GF-SPDSYTYNILLHILGKGNKPLAALTTLNHMKEVGIDPSVLHYTTLIDG 333
Query: 343 LGRFSERNMVKEAVDLYEFAMA-CKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRE 401
L R K +D E A C +P V C T ++ VVS +LD K +FRE
Sbjct: 334 LSRAGNLEACKYFLD--EMVKAGC--RPDVVCYTVMITGYVVSGELD-----KAKEMFRE 384
Query: 402 ---NGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGK 458
G + NS+++ L G E +LK ME G + + S + L AGK
Sbjct: 385 MTVKGQLPNVFTYNSMIRGLCMAGEFREACWLLKEMESRGCNPNFVVYSTLVSYLRKAGK 444
Query: 459 KDEANEFMDHMEASGSDV 476
EA + + M G V
Sbjct: 445 LSEARKVIREMVKKGHYV 462
>sp|Q9FH87|PP447_ARATH Putative pentatricopeptide repeat-containing protein At5g65820
OS=Arabidopsis thaliana GN=At5g65820 PE=3 SV=1
Length = 637
Score = 74.7 bits (182), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 84/365 (23%), Positives = 152/365 (41%), Gaps = 21/365 (5%)
Query: 254 VERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGR 313
+E L + V L++ V+++ GD FF WA + H Y +M +L +
Sbjct: 100 LELALNESGVELRPGLIERVLNRCGDAGNLGYRFFVWAAKQPRYCHSIEVYKSMVKILSK 159
Query: 314 EDCIDRFWKVLDEMRSKGYEM-EMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVN 372
W +++EMR + ++ E E V ++ RF+ +MVK+A+++ + +P
Sbjct: 160 MRQFGAVWGLIEEMRKENPQLIEPELFVVLVQRFASADMVKKAIEVLDEMPKFGFEPDEY 219
Query: 373 CCTFLLRKIVVSKQLD--MRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKI 430
LL + + +LF + F N T S+L VG+M E +
Sbjct: 220 VFGCLLDALCKHGSVKDAAKLFEDMRMRFPVNLRYFT-----SLLYGWCRVGKMMEAKYV 274
Query: 431 LKAMEEGGF----IASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIK 486
L M E GF + +N+ S A +AGK +A + + M G + + LI+
Sbjct: 275 LVQMNEAGFEPDIVDYTNLLSGYA----NAGKMADAYDLLRDMRRRGFEPNANCYTVLIQ 330
Query: 487 GHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDL 546
C +++A F +M E + LV+ +C + ID C V + + + L
Sbjct: 331 ALCKVDRMEEAMKVFVEMERYECEADV-VTYTALVSGFCKWGK-IDKCYIVLDDMIKKGL 388
Query: 547 KPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPF---IKYVSKSGTSDDAIA 603
P TY ++ + F++ L L+ M+ + P + + I+ K G +A+
Sbjct: 389 MPSELTYMHIMVAHEKKESFEECLELMEKMRQIEYHPDIGIYNVVIRLACKLGEVKEAVR 448
Query: 604 FLKGM 608
M
Sbjct: 449 LWNEM 453
Score = 33.1 bits (74), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 42/96 (43%), Gaps = 1/96 (1%)
Query: 99 SDFTVVSDIFYKF-SDVNDISKQLELSGVVFTHEMVLKVLKNLESSPDEARRFFNWVLEK 157
SD I KF S V + L SGV ++ +VL + + RFF W ++
Sbjct: 81 SDVEKSYRILRKFHSRVPKLELALNESGVELRPGLIERVLNRCGDAGNLGYRFFVWAAKQ 140
Query: 158 ESERLSSKTYNLMLRIVGVHGLVQEFWGLVDVMKKK 193
S + Y M++I+ WGL++ M+K+
Sbjct: 141 PRYCHSIEVYKSMVKILSKMRQFGAVWGLIEEMRKE 176
>sp|Q0WVK7|PPR12_ARATH Pentatricopeptide repeat-containing protein At1g05670,
mitochondrial OS=Arabidopsis thaliana GN=At1g05670 PE=2
SV=1
Length = 741
Score = 73.9 bits (180), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 100/426 (23%), Positives = 177/426 (41%), Gaps = 21/426 (4%)
Query: 166 TYNLMLRIVGVHGLVQEFWGLVDVMKKKGYG----VASHVRNKMTEKFEKEGLESDLE-- 219
+YN+++ V G ++E L+ +M+ KGY S V N E + + +E
Sbjct: 248 SYNIVIHFVCQLGRIKEAHHLLLLMELKGYTPDVISYSTVVNGYCRFGELDKVWKLIEVM 307
Query: 220 KLKGIFATGSIDNSIEKVASRICKVVRSDIWGDDVERQ--LRDLNVTFSNDLVKFVVDKL 277
K KG+ I SI + RICK+ ++ ++ RQ L D V ++ + F K
Sbjct: 308 KRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGILPD-TVVYTTLIDGFC--KR 364
Query: 278 GDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEME 337
GD + F+ + D +Y A+ S + + K+ EM KG E +
Sbjct: 365 GDIRAASKFFYEMHSRD--ITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSV 422
Query: 338 TCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDM--RLFSKV 395
T +++ + + +K+A ++ + P+V T L+ + LD L ++
Sbjct: 423 TFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEM 482
Query: 396 VRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSS 455
++ + N+ T NS++ L G + E K++ E G A + + +
Sbjct: 483 WKIGLQP-NIFT---YNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCK 538
Query: 456 AGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGY 515
+G+ D+A E + M G + L+ G C+ G L+ M+ K G +
Sbjct: 539 SGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAK-GIAPNAT 597
Query: 516 AIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCL 575
+ LV YC +N + A ++ + + P TYE L+K R K+A L
Sbjct: 598 TFNSLVKQYCIRNN-LKAATAIYKDMCSRGVGPDGKTYENLVKGHCKARNMKEAWFLFQE 656
Query: 576 MKDHGF 581
MK GF
Sbjct: 657 MKGKGF 662
Score = 49.7 bits (117), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 93/392 (23%), Positives = 150/392 (38%), Gaps = 59/392 (15%)
Query: 237 VASRICKVVRSDI---WGDDVERQLRDLNVTFSN----DLVKFVVDKLGDEPKKALIFFR 289
VAS+ KV +S I W ER LNVT S DL+ + G +P+ +FF+
Sbjct: 130 VASKDLKVAQSLISSFW----ERP--KLNVTDSFVQFFDLLVYTYKDWGSDPRVFDVFFQ 183
Query: 290 WAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSER 349
+ G ++ +V ++M + G + +++C L R S +
Sbjct: 184 VLVDFGLLREAR--------------------RVFEKMLNYGLVLSVDSCNVYLTRLS-K 222
Query: 350 NMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDA 409
+ K A + F + P V C V S + + ++ R+ +E ++L
Sbjct: 223 DCYKTATAIIVF----REFPEVGVCW-----NVASYNIVIHFVCQLGRI-KEAHHLLLLM 272
Query: 410 MLNSVLKALISVG-------RMGECNKILK---AMEEGGFIASSNMKSKIAFRLSSAGKK 459
L +IS R GE +K+ K M+ G +S + I L K
Sbjct: 273 ELKGYTPDVISYSTVVNGYCRFGELDKVWKLIEVMKRKGLKPNSYIYGSIIGLLCRICKL 332
Query: 460 DEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDL 519
EA E M G ++ +LI G C GD+ A+ F +M ++ T
Sbjct: 333 AEAEEAFSEMIRQGILPDTVVYTTLIDGFCKRGDIRAASKFFYEMHSRDITPDV-LTYTA 391
Query: 520 LVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDH 579
+++ +C ++A K H + L+P T+ ELI KDA + M
Sbjct: 392 IISGFCQIGDMVEAGKLFHEMFCK-GLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQA 450
Query: 580 GFPPFVDPF---IKYVSKSGTSDDAIAFLKGM 608
G P V + I + K G D A L M
Sbjct: 451 GCSPNVVTYTTLIDGLCKEGDLDSANELLHEM 482
>sp|Q9S7Q2|PP124_ARATH Pentatricopeptide repeat-containing protein At1g74850,
chloroplastic OS=Arabidopsis thaliana GN=PTAC2 PE=2 SV=1
Length = 862
Score = 72.0 bits (175), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 74/358 (20%), Positives = 144/358 (40%), Gaps = 7/358 (1%)
Query: 282 KKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVK 341
+++L F++ + + K +E Y M S+LGRE +D+ +V DEM S+G + +
Sbjct: 122 QRSLRLFKYMQRQIWCKPNEHIYTIMISLLGREGLLDKCLEVFDEMPSQGVSRSVFSYTA 181
Query: 342 VLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRE 401
++ + + +++L + K PS+ ++ LD + R
Sbjct: 182 LINAYGRNGRYETSLELLDRMKNEKISPSILTYNTVINA-CARGGLDWEGLLGLFAEMRH 240
Query: 402 NGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDE 461
G N++L A G E + + M +GG + S + + ++
Sbjct: 241 EGIQPDIVTYNTLLSACAIRGLGDEAEMVFRTMNDGGIVPDLTTYSHLVETFGKLRRLEK 300
Query: 462 ANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLV 521
+ + M + GS + L++ + +G + +A F +M + G + +L+
Sbjct: 301 VCDLLGEMASGGSLPDITSYNVLLEAYAKSGSIKEAMGVFHQM-QAAGCTPNANTYSVLL 359
Query: 522 NTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGF 581
N + R D + ++ + P TY LI+ FK+ ++L M +
Sbjct: 360 NLFGQSGRYDDVRQLFLE-MKSSNTDPDAATYNILIEVFGEGGYFKEVVTLFHDMVEENI 418
Query: 582 PPFVDPF---IKYVSKSGTSDDAIAFLKGMTSKRF-PSMSVVLCLFAAFFQARRHSEA 635
P ++ + I K G +DA L+ MT+ PS + AF QA + EA
Sbjct: 419 EPDMETYEGIIFACGKGGLHEDARKILQYMTANDIVPSSKAYTGVIEAFGQAALYEEA 476
Score = 50.4 bits (119), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 78/370 (21%), Positives = 147/370 (39%), Gaps = 22/370 (5%)
Query: 149 RFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRNKMTEK 208
R F ++ + + + Y +M+ ++G GL+ + + D M +G + +
Sbjct: 126 RLFKYMQRQIWCKPNEHIYTIMISLLGREGLLDKCLEVFDEMPSQGVSRSVFSYTALINA 185
Query: 209 FEKEG-LESDLEKLKGIFATGSIDNSIEKVASRICKVVRSDI-W----GDDVERQLRDLN 262
+ + G E+ LE L + I SI + I R + W G E + +
Sbjct: 186 YGRNGRYETSLELLDRM-KNEKISPSILTYNTVINACARGGLDWEGLLGLFAEMRHEGIQ 244
Query: 263 ---VTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDR 319
VT++ L + LGDE A + FR + G V D ++Y+ + G+ +++
Sbjct: 245 PDIVTYNTLLSACAIRGLGDE---AEMVFRTMNDGGIVP-DLTTYSHLVETFGKLRRLEK 300
Query: 320 FWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLR 379
+L EM S G ++ + +L +++ +KEA+ ++ A P+ N + LL
Sbjct: 301 VCDLLGEMASGGSLPDITSYNVLLEAYAKSGSIKEAMGVFHQMQAAGCTPNANTYSVLLN 360
Query: 380 KIVVSKQLDMRLFSKVVRVFRENGNVLTD---AMLNSVLKALISVGRMGECNKILKAMEE 436
S + D V ++F E + TD A N +++ G E + M E
Sbjct: 361 LFGQSGRYD-----DVRQLFLEMKSSNTDPDAATYNILIEVFGEGGYFKEVVTLFHDMVE 415
Query: 437 GGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDK 496
I F G ++A + + +M A+ K + +I+ A ++
Sbjct: 416 ENIEPDMETYEGIIFACGKGGLHEDARKILQYMTANDIVPSSKAYTGVIEAFGQAALYEE 475
Query: 497 AADCFQKMVE 506
A F M E
Sbjct: 476 ALVAFNTMHE 485
>sp|Q9S7R4|PP125_ARATH Pentatricopeptide repeat-containing protein At1g74900,
mitochondrial OS=Arabidopsis thaliana GN=OTP43 PE=2 SV=1
Length = 482
Score = 72.0 bits (175), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 93/384 (24%), Positives = 163/384 (42%), Gaps = 29/384 (7%)
Query: 265 FSNDLVKFVVDKLGDEPKKALIFFRWAEESG--FVKHDESSYNAMASVLGREDCIDRFWK 322
++ +LV V+ +L + KAL FF + + +V HD SS++ + R W
Sbjct: 54 WTPNLVNSVLKRLWNHGPKALQFFHFLDNHHREYV-HDASSFDLAIDIAARLHLHPTVWS 112
Query: 323 VLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLY--EFAMAC-KNKPSVNCCTFLLR 379
++ MRS +T V R++ +AV L+ C ++ S N +L
Sbjct: 113 LIHRMRSLRIGPSPKTFAIVAERYASAGKPDKAVKLFLNMHEHGCFQDLASFNTILDVLC 172
Query: 380 KIVVSKQLDMRLFSKVVRVFRE-NGNVLTDAM-LNSVLKALISVGRMGECNKILKAMEEG 437
K SK+++ K +FR G D + N +L + R + ++LK M E
Sbjct: 173 K---SKRVE-----KAYELFRALRGRFSVDTVTYNVILNGWCLIKRTPKALEVLKEMVER 224
Query: 438 GF---IASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDL 494
G + + N K FR AG+ A EF M+ ++ + +++ G VAG++
Sbjct: 225 GINPNLTTYNTMLKGFFR---AGQIRHAWEFFLEMKKRDCEIDVVTYTTVVHGFGVAGEI 281
Query: 495 DKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYE 554
+A + F +M+ +EG + + ++ C K+ +A VR +P TTY
Sbjct: 282 KRARNVFDEMI-REGVLPSVATYNAMIQVLCKKDNVENAVVMFEEMVRR-GYEPNVTTYN 339
Query: 555 ELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPF---IKYVSKSGTSDDAIAFLKGMTSK 611
LI+ L F L+ M++ G P + I+Y S+ + A+ + M S
Sbjct: 340 VLIRGLFHAGEFSRGEELMQRMENEGCEPNFQTYNMMIRYYSECSEVEKALGLFEKMGSG 399
Query: 612 R-FPSMSVVLCLFAAFFQARRHSE 634
P++ L + F R+ SE
Sbjct: 400 DCLPNLDTYNILISGMF-VRKRSE 422
Score = 38.5 bits (88), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 65/280 (23%), Positives = 110/280 (39%), Gaps = 59/280 (21%)
Query: 198 ASHVRNKMTEKFEKEGLESDLEKLKGIFATGSIDNSIE---KVASRICKVVRSDIWGDDV 254
A V +M E+ L + LKG F G I ++ E ++ R C++ DV
Sbjct: 214 ALEVLKEMVERGINPNLTTYNTMLKGFFRAGQIRHAWEFFLEMKKRDCEI--------DV 265
Query: 255 ERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGRE 314
VT++ + F V E K+A F G V ++YNAM VL ++
Sbjct: 266 --------VTYTTVVHGFGV---AGEIKRARNVFDEMIREG-VLPSVATYNAMIQVLCKK 313
Query: 315 DCIDRFWKVLDEMRSKGYE----------------------------MEMETCVK----- 341
D ++ + +EM +GYE ME E C
Sbjct: 314 DNVENAVVMFEEMVRRGYEPNVTTYNVLIRGLFHAGEFSRGEELMQRMENEGCEPNFQTY 373
Query: 342 --VLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQL-DMRLFSKVVRV 398
++ +SE + V++A+ L+E + P+++ L+ + V K+ DM + K++
Sbjct: 374 NMMIRYYSECSEVEKALGLFEKMGSGDCLPNLDTYNILISGMFVRKRSEDMVVAGKLLLE 433
Query: 399 FRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGG 438
E G + N VL L+ G +IL+ + G
Sbjct: 434 MVERGFIPRKFTFNRVLNGLLLTGNQAFAKEILRLQSKSG 473
>sp|Q9LW84|PP236_ARATH Pentatricopeptide repeat-containing protein At3g16010
OS=Arabidopsis thaliana GN=At3g16010 PE=2 SV=1
Length = 642
Score = 70.5 bits (171), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 94/425 (22%), Positives = 176/425 (41%), Gaps = 30/425 (7%)
Query: 231 DNSIEKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRW 290
D S+ + R ++V+ WG D E+ L L + + LV+ +++ + E + FF+W
Sbjct: 57 DPSVRMLDERFIRIVKIFKWGPDAEKALEVLKLKVDHRLVRSILE-IDVEINVKIQFFKW 115
Query: 291 AEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGY----EMEMETCVKVLGRF 346
A + +HD S+Y + L ++ + E+ Y + VK LGR
Sbjct: 116 AGKRRNFQHDCSTYMTLIRCLEEARLYGEMYRTIQEVVRNTYVSVSPAVLSELVKALGR- 174
Query: 347 SERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRE---NG 403
MV +A+ ++ A K KP+ + ++ ++ Q + KV V+ E G
Sbjct: 175 --AKMVSKALSVFYQAKGRKCKPTSSTYNSVILMLMQEGQHE-----KVHEVYTEMCNEG 227
Query: 404 NVLTDAMLNSVLKALIS----VGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKK 459
+ D + S ALIS +GR ++ M++ + + + + GK
Sbjct: 228 DCFPDTITYS---ALISSYEKLGRNDSAIRLFDEMKDNCMQPTEKIYTTLLGIYFKVGKV 284
Query: 460 DEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDL 519
++A + + M+ +G + LIKG AG +D+A ++ M+ ++G + ++
Sbjct: 285 EKALDLFEEMKRAGCSPTVYTYTELIKGLGKAGRVDEAYGFYKDML-RDGLTPDVVFLNN 343
Query: 520 LVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRG-FKDALSLLCLMKD 578
L+N R ++ V + + + P +Y +IK L + + S MK
Sbjct: 344 LMNILGKVGR-VEELTNVFSEMGMWRCTPTVVSYNTVIKALFESKAHVSEVSSWFDKMKA 402
Query: 579 HGFPP---FVDPFIKYVSKSGTSDDAIAFLKGMTSKRFPSMSVVLC-LFAAFFQARRHSE 634
P I K+ + A+ L+ M K FP C L A +A+R+
Sbjct: 403 DSVSPSEFTYSILIDGYCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINALGKAKRYEA 462
Query: 635 AQDLL 639
A +L
Sbjct: 463 ANELF 467
Score = 47.8 bits (112), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 62/283 (21%), Positives = 117/283 (41%), Gaps = 15/283 (5%)
Query: 305 NAMASVLGREDCIDRFWKVLDEM---RSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEF 361
N + ++LG+ ++ V EM R + T +K L F + V E ++
Sbjct: 342 NNLMNILGKVGRVEELTNVFSEMGMWRCTPTVVSYNTVIKAL--FESKAHVSEVSSWFDK 399
Query: 362 AMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISV 421
A PS + L+ + +++ L ++ E G A S++ AL
Sbjct: 400 MKADSVSPSEFTYSILIDGYCKTNRVEKALL--LLEEMDEKGFPPCPAAYCSLINALGKA 457
Query: 422 GRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMW 481
R N++ K ++E SS + + + GK EA + + M+ GS +
Sbjct: 458 KRYEAANELFKELKENFGNVSSRVYAVMIKHFGKCGKLSEAVDLFNEMKNQGSGPDVYAY 517
Query: 482 VSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKN---RAIDACKFVH 538
+L+ G AG +++A +KM E+ G + ++++N + RAI+ +
Sbjct: 518 NALMSGMVKAGMINEANSLLRKM-EENGCRADINSHNIILNGFARTGVPRRAIE----MF 572
Query: 539 NCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGF 581
++ +KP TY L+ F++A ++ MKD GF
Sbjct: 573 ETIKHSGIKPDGVTYNTLLGCFAHAGMFEEAARMMREMKDKGF 615
>sp|Q9XIM8|PP155_ARATH Pentatricopeptide repeat-containing protein At2g15980
OS=Arabidopsis thaliana GN=At2g15980 PE=2 SV=1
Length = 498
Score = 69.3 bits (168), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 70/301 (23%), Positives = 123/301 (40%), Gaps = 20/301 (6%)
Query: 317 IDRFWKVLDEMRSKGYEMEMETCVKVLGRFSER-------NMVKEAVDLYEFA------M 363
ID V+ ++RS+G ++ TC ++ S R M +E L + + M
Sbjct: 178 IDGAVMVMRKLRSRGINAQISTCNALITEVSRRRGASNGYKMYREVFGLDDVSVDEAKKM 237
Query: 364 ACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAM-LNSVLKALISVG 422
K KP N TF + ++ + + ++ R E + N +++A + G
Sbjct: 238 IGKIKP--NATTFNSMMVSFYREGETEMVERIWREMEEEVGCSPNVYSYNVLMEAYCARG 295
Query: 423 RMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWV 482
M E K+ + M+ G + + + L S + +A E M G + +
Sbjct: 296 LMSEAEKVWEEMKVRGVVYDIVAYNTMIGGLCSNFEVVKAKELFRDMGLKGIECTCLTYE 355
Query: 483 SLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSK---NRAIDACKFVHN 539
L+ G+C AGD+D +++M +++G G I+ LV C R ++A V +
Sbjct: 356 HLVNGYCKAGDVDSGLVVYREM-KRKGFEADGLTIEALVEGLCDDRDGQRVVEAADIVKD 414
Query: 540 CVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPFIKYVSKSGTSD 599
VRE P YE L+K L AL++ M GF P + + ++ G
Sbjct: 415 AVREAMFYPSRNCYELLVKRLCEDGKMDRALNIQAEMVGKGFKPSQETYRAFIDGYGIVG 474
Query: 600 D 600
D
Sbjct: 475 D 475
>sp|P0C8R0|PP416_ARATH Putative pentatricopeptide repeat-containing protein At5g43820
OS=Arabidopsis thaliana GN=At5g43820 PE=3 SV=1
Length = 546
Score = 68.6 bits (166), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 77/358 (21%), Positives = 140/358 (39%), Gaps = 47/358 (13%)
Query: 254 VERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGR 313
+++ L L + S D+V V+++ + + FF WA V D SY+ + LGR
Sbjct: 104 IQKSLSSLGIGLSIDIVADVLNRGNLSGEAMVTFFDWAVREPGVTKDVGSYSVILRALGR 163
Query: 314 EDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNC 373
VL M +G ++E + F + V+ A++L+E + + K S
Sbjct: 164 RKLFSFMMDVLKGMVCEGVNPDLECLTIAMDSFVRVHYVRRAIELFEESESFGVKCSTES 223
Query: 374 CTFLLRKIVVSKQLDMRLFSKVVRVFR-ENGNVLTDAM-LNSVLKALISVGRMGECNKIL 431
LLR + + S VF + GN+ D+ N ++ +G + E K+L
Sbjct: 224 FNALLRCLCERSHV-----SAAKSVFNAKKGNIPFDSCSYNIMISGWSKLGEVEEMEKVL 278
Query: 432 KAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVA 491
K M E GF S + L G+ +++ E D+++ G+ ++ ++I A
Sbjct: 279 KEMVESGFGPDCLSYSHLIEGLGRTGRINDSVEIFDNIKHKGNVPDANVYNAMICNFISA 338
Query: 492 GDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHT 551
D D++ +++M+++E +P
Sbjct: 339 RDFDESMRYYRRMLDEE-------------------------------------CEPNLE 361
Query: 552 TYEELIKNLLVQRGFKDALSLLCLMKDHGFPP---FVDPFIKYVSKSGTSDDAIAFLK 606
TY +L+ L+ R DAL + M G P V F+K + G A+ +
Sbjct: 362 TYSKLVSGLIKGRKVSDALEIFEEMLSRGVLPTTGLVTSFLKPLCSYGPPHAAMVIYQ 419
Score = 46.6 bits (109), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 88/424 (20%), Positives = 165/424 (38%), Gaps = 66/424 (15%)
Query: 117 ISKQLELSGVVFTHEMVLKVLKNLESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVGV 176
I K L G+ + ++V VL S + FF+W + + +Y+++LR +G
Sbjct: 104 IQKSLSSLGIGLSIDIVADVLNRGNLSGEAMVTFFDWAVREPGVTKDVGSYSVILRALGR 163
Query: 177 HGLVQEFWGLVDVMKKKGYGVASHVRNKMTEKFEKEGLESDLEKLKGIFATGSIDNSIEK 236
L F ++DV+K G+ EG+ DLE L T ++D+ +
Sbjct: 164 RKL---FSFMMDVLK----GMVC------------EGVNPDLECL-----TIAMDSFV-- 197
Query: 237 VASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGF 296
R+ V R+ ++ E + N L++ + ++ K++ + + G
Sbjct: 198 ---RVHYVRRAIELFEESESFGVKCSTESFNALLRCLCERSHVSAAKSV----FNAKKGN 250
Query: 297 VKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAV 356
+ D SYN M S + ++ KVL EM G+ + + ++ + ++V
Sbjct: 251 IPFDSCSYNIMISGWSKLGEVEEMEKVLKEMVESGFGPDCLSYSHLIEGLGRTGRINDSV 310
Query: 357 DLYEFAMACKNKPSVNC-----CTFL-----------LRKIV--------------VSKQ 386
++++ N P N C F+ R+++ VS
Sbjct: 311 EIFDNIKHKGNVPDANVYNAMICNFISARDFDESMRYYRRMLDEECEPNLETYSKLVSGL 370
Query: 387 LDMRLFSKVVRVFRE---NGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASS 443
+ R S + +F E G + T ++ S LK L S G I + + G S
Sbjct: 371 IKGRKVSDALEIFEEMLSRGVLPTTGLVTSFLKPLCSYGPPHAAMVIYQKSRKAGCRISE 430
Query: 444 NMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQK 503
+ + RLS GK D M+ SG +++ ++ G C+ G L+ A ++
Sbjct: 431 SAYKLLLKRLSRFGKCGMLLNVWDEMQESGYPSDVEVYEYIVDGLCIIGHLENAVLVMEE 490
Query: 504 MVEK 507
+ K
Sbjct: 491 AMRK 494
>sp|Q9FX35|PP117_ARATH Pentatricopeptide repeat-containing protein At1g73400,
mitochondrial OS=Arabidopsis thaliana GN=At1g73400 PE=2
SV=2
Length = 568
Score = 68.6 bits (166), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 79/388 (20%), Positives = 163/388 (42%), Gaps = 50/388 (12%)
Query: 252 DDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVL 311
DD+E+ L + +V + +V ++ +L E K A FF WA H+ +YN M +L
Sbjct: 110 DDMEKALDESSVDLTTPVVCKILQRLQYEEKTAFRFFTWAGHQEHYSHEPIAYNEMIDIL 169
Query: 312 GREDCIDRFWKVLDEM-----RSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACK 366
++ ++++ +M R+ + ++ +++L ++ ER + + +FA
Sbjct: 170 SSTKYKNKQFRIVIDMLDYMKRNNKTVVLVDVLLEILRKYCERYLTH----VQKFAKR-- 223
Query: 367 NKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGE 426
++I V Q ++ F N +L AL G + E
Sbjct: 224 ------------KRIRVKTQPEINAF-------------------NMLLDALCKCGLVKE 252
Query: 427 CNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIK 486
+L+ M +N + + F +A + ++ M +G + + + I
Sbjct: 253 GEALLRRMRH-RVKPDANTFNVLFFGWCRVRDPKKAMKLLEEMIEAGHKPENFTYCAAID 311
Query: 487 GHCVAGDLDKAADCFQKMVEKEGTSHAGYA--IDLLVNTYCSKNRAIDACKFVHNCVREY 544
C AG +D+AAD F M+ K A A L++ ++A + + + +
Sbjct: 312 TFCQAGMVDEAADLFDFMITKGSAVSAPTAKTFALMIVALAKNDKAEECFELIGRMISTG 371
Query: 545 DLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFV---DPFIKYVSKSGTSDDA 601
L P +TY+++I+ + + +A L M + G+PP + + F++ + ++ +D+A
Sbjct: 372 CL-PDVSTYKDVIEGMCMAEKVDEAYKFLDEMSNKGYPPDIVTYNCFLRVLCENRKTDEA 430
Query: 602 IAFLKGMTSKR-FPSMSVVLCLFAAFFQ 628
+ M R PS+ L + FF+
Sbjct: 431 LKLYGRMVESRCAPSVQTYNMLISMFFE 458
Score = 36.2 bits (82), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 32/69 (46%)
Query: 107 IFYKFSDVNDISKQLELSGVVFTHEMVLKVLKNLESSPDEARRFFNWVLEKESERLSSKT 166
I + +D+ K L+ S V T +V K+L+ L+ A RFF W +E
Sbjct: 102 IMANLNAYDDMEKALDESSVDLTTPVVCKILQRLQYEEKTAFRFFTWAGHQEHYSHEPIA 161
Query: 167 YNLMLRIVG 175
YN M+ I+
Sbjct: 162 YNEMIDILS 170
>sp|P0C8A0|PP275_ARATH Pentatricopeptide repeat-containing protein At3g49730
OS=Arabidopsis thaliana GN=At3g49730 PE=2 SV=1
Length = 638
Score = 68.6 bits (166), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 87/381 (22%), Positives = 155/381 (40%), Gaps = 15/381 (3%)
Query: 254 VERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGR 313
+E L + + L+ V+ + GD FF WA + H +M +L +
Sbjct: 84 LELALNESGIDLRPGLIIRVLSRCGDAGNLGYRFFLWATKQPGYFHSYEVCKSMVMILSK 143
Query: 314 EDCIDRFWKVLDEMRSKGYEM-EMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVN 372
W +++EMR E+ E E V ++ RF+ NMVK+AV++ + +P
Sbjct: 144 MRQFGAVWGLIEEMRKTNPELIEPELFVVLMRRFASANMVKKAVEVLDEMPKYGLEPDEY 203
Query: 373 CCTFLLRKIVVSKQLDMRLFSKVVRVFREN--GNVLTDAMLNSVLKALISVGRMGECNKI 430
LL + K ++ SKV RE N+ S+L G++ E ++
Sbjct: 204 VFGCLLD--ALCKNGSVKEASKVFEDMREKFPPNL---RYFTSLLYGWCREGKLMEAKEV 258
Query: 431 LKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHC- 489
L M+E G + + + + AGK +A + M+ M G + + LI+ C
Sbjct: 259 LVQMKEAGLEPDIVVFTNLLSGYAHAGKMADAYDLMNDMRKRGFEPNVNCYTVLIQALCR 318
Query: 490 VAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPW 549
+D+A F +M E+ G L++ +C K ID V + +R+ + P
Sbjct: 319 TEKRMDEAMRVFVEM-ERYGCEADIVTYTALISGFC-KWGMIDKGYSVLDDMRKKGVMPS 376
Query: 550 HTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPP---FVDPFIKYVSKSGTSDDAIAFLK 606
TY +++ + F++ L L+ MK G P + I+ K G +A+
Sbjct: 377 QVTYMQIMVAHEKKEQFEECLELIEKMKRRGCHPDLLIYNVVIRLACKLGEVKEAVRLWN 436
Query: 607 GMTSKRF-PSMSVVLCLFAAF 626
M + P + + + F
Sbjct: 437 EMEANGLSPGVDTFVIMINGF 457
Score = 56.2 bits (134), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 98/493 (19%), Positives = 187/493 (37%), Gaps = 80/493 (16%)
Query: 95 EQKESDFTVVSDIFYKF-----SDVNDISKQLELSGVVFTHEMVLKVLKNLESSPDEARR 149
E+ E +F + Y+ S V + L SG+ ++++VL + + R
Sbjct: 57 EKHEDEFAGEVEKIYRILRNHHSRVPKLELALNESGIDLRPGLIIRVLSRCGDAGNLGYR 116
Query: 150 FFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLVDVMKK---------------KG 194
FF W ++ S + M+ I+ WGL++ M+K +
Sbjct: 117 FFLWATKQPGYFHSYEVCKSMVMILSKMRQFGAVWGLIEEMRKTNPELIEPELFVVLMRR 176
Query: 195 YGVASHVRN--KMTEKFEKEGLESDLEKLKGIFATGSIDNSIEKVASRICKVVRSDIWGD 252
+ A+ V+ ++ ++ K GLE D E + G N K AS++
Sbjct: 177 FASANMVKKAVEVLDEMPKYGLEPD-EYVFGCLLDALCKNGSVKEASKV----------- 224
Query: 253 DVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLG 312
D+ F +L F + + W E ++ E
Sbjct: 225 -----FEDMREKFPPNLRYFTS-----------LLYGWCREGKLMEAKE----------- 257
Query: 313 REDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVN 372
VL +M+ G E ++ +L ++ + +A DL +P+VN
Sbjct: 258 ----------VLVQMKEAGLEPDIVVFTNLLSGYAHAGKMADAYDLMNDMRKRGFEPNVN 307
Query: 373 CCTFLLRKIV-VSKQLD--MRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNK 429
C T L++ + K++D MR+F ++ R E V A+++ K G + +
Sbjct: 308 CYTVLIQALCRTEKRMDEAMRVFVEMERYGCEADIVTYTALISGFCKW----GMIDKGYS 363
Query: 430 ILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHC 489
+L M + G + S +I + +E E ++ M+ G ++ +I+ C
Sbjct: 364 VLDDMRKKGVMPSQVTYMQIMVAHEKKEQFEECLELIEKMKRRGCHPDLLIYNVVIRLAC 423
Query: 490 VAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCV-REYDLKP 548
G++ +A + +M E G S +++N + S+ I+AC V R P
Sbjct: 424 KLGEVKEAVRLWNEM-EANGLSPGVDTFVIMINGFTSQGFLIEACNHFKEMVSRGIFSAP 482
Query: 549 WHTTYEELIKNLL 561
+ T + L+ NL+
Sbjct: 483 QYGTLKSLLNNLV 495
>sp|Q9LSL9|PP445_ARATH Pentatricopeptide repeat-containing protein At5g65560
OS=Arabidopsis thaliana GN=At5g65560 PE=2 SV=1
Length = 915
Score = 67.0 bits (162), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 72/318 (22%), Positives = 138/318 (43%), Gaps = 11/318 (3%)
Query: 278 GDEPK-KALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEM 336
G E K +AL + EE+G +K + +Y + L + ++ ++L +M KG +
Sbjct: 335 GSERKSEALNLVKEMEETG-IKPNIHTYTVLIDSLCSQCKFEKARELLGQMLEKGLMPNV 393
Query: 337 ETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSK-QLDMRLFSKV 395
T ++ + +R M+++AVD+ E + K P+ L++ S M + +K+
Sbjct: 394 ITYNALINGYCKRGMIEDAVDVVELMESRKLSPNTRTYNELIKGYCKSNVHKAMGVLNKM 453
Query: 396 VRVFRENGNVLTDAML-NSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLS 454
+ VL D + NS++ G ++L M + G + + + L
Sbjct: 454 LE-----RKVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDQWTYTSMIDSLC 508
Query: 455 SAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAG 514
+ + +EA + D +E G + M+ +LI G+C AG +D+A +KM+ K ++
Sbjct: 509 KSKRVEEACDLFDSLEQKGVNPNVVMYTALIDGYCKAGKVDEAHLMLEKMLSKNCLPNS- 567
Query: 515 YAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLC 574
+ L++ C+ + +A V+ L+P +T LI LL F A S
Sbjct: 568 LTFNALIHGLCADGKLKEATLLEEKMVK-IGLQPTVSTDTILIHRLLKDGDFDHAYSRFQ 626
Query: 575 LMKDHGFPPFVDPFIKYV 592
M G P + ++
Sbjct: 627 QMLSSGTKPDAHTYTTFI 644
Score = 62.4 bits (150), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 88/373 (23%), Positives = 150/373 (40%), Gaps = 33/373 (8%)
Query: 280 EPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKV-------LDEMRSKGY 332
+PK AL F W ++ KH SY ++ ++L + +K+ D + Y
Sbjct: 102 DPKTALNFSHWISQNPRYKHSVYSYASLLTLLINNGYVGVVFKIRLLMIKSCDSVGDALY 161
Query: 333 EMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLF 392
+++ C K+ ER +K Y+ + C N + F L + KQ+ M +
Sbjct: 162 VLDL--CRKM--NKDERFELK-----YKLIIGCYNTLLNSLARFGL--VDEMKQVYMEML 210
Query: 393 SKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFR 452
V N+ T N ++ +G + E N+ + + E G + +
Sbjct: 211 EDKV-----CPNIYT---YNKMVNGYCKLGNVEEANQYVSKIVEAGLDPDFFTYTSLIMG 262
Query: 453 LSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSH 512
D A + + M G + + LI G CVA +D+A D F KM + E
Sbjct: 263 YCQRKDLDSAFKVFNEMPLKGCRRNEVAYTHLIHGLCVARRIDEAMDLFVKMKDDECFPT 322
Query: 513 AGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSL 572
+L+ + C R +A V + E +KP TY LI +L Q F+ A L
Sbjct: 323 V-RTYTVLIKSLCGSERKSEALNLVKE-MEETGIKPNIHTYTVLIDSLCSQCKFEKAREL 380
Query: 573 LCLMKDHGFPPFV---DPFIKYVSKSGTSDDAIAFLKGMTSKRF-PSMSVVLCLFAAFFQ 628
L M + G P V + I K G +DA+ ++ M S++ P+ L + +
Sbjct: 381 LGQMLEKGLMPNVITYNALINGYCKRGMIEDAVDVVELMESRKLSPNTRTYNELIKGYCK 440
Query: 629 ARRHSEAQDLLSK 641
+ H +A +L+K
Sbjct: 441 SNVH-KAMGVLNK 452
>sp|Q84VG6|PP160_ARATH Pentatricopeptide repeat-containing protein At2g17525,
mitochondrial OS=Arabidopsis thaliana GN=At2g17525 PE=2
SV=2
Length = 626
Score = 66.2 bits (160), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 94/421 (22%), Positives = 167/421 (39%), Gaps = 81/421 (19%)
Query: 267 NDLVKFVVDKLGDEPKKALIFFRWAEE-SGFVKHDESSYNAMASVLGREDCIDRFWKVLD 325
+ +V+ ++D+ AL FRWA GF+ H S+Y A+ L D +++LD
Sbjct: 44 DHIVRLILDQ--KSASGALETFRWASTFPGFI-HSRSTYRALFHKLCVFRRFDTVYQLLD 100
Query: 326 EMR-SKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCT--------- 375
EM S G + V ++ F ++K + + + KPS+
Sbjct: 101 EMPDSIGLPPDDAIFVTIIRGFGRARLIKRVISVVDLVSKFGIKPSLKVFNSILDVLVKE 160
Query: 376 -------FLLRKIVVSK--------QLDMRLFS---------KVVRVFRENGNVLTDAML 411
F RK++ S + M+ S K++++ + +G +
Sbjct: 161 DIDIAREFFTRKMMASGIHGDVYTYGILMKGLSLTNRIGDGFKLLQIMKTSGVAPNAVVY 220
Query: 412 NSVLKALISVGRMGECNKILKAMEEG-------------------------------GFI 440
N++L AL G++G ++ M+E GF+
Sbjct: 221 NTLLHALCKNGKVGRARSLMSEMKEPNDVTFNILISAYCNEQKLIQSMVLLEKCFSLGFV 280
Query: 441 ASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADC 500
+K+ L + G+ EA E ++ +E+ G V +L+KG+C G + A
Sbjct: 281 PDVVTVTKVMEVLCNEGRVSEALEVLERVESKGGKVDVVACNTLVKGYCALGKMRVAQRF 340
Query: 501 FQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNL 560
F +M E++G +LL+ YC +D+ N ++ ++ T+ LI+ L
Sbjct: 341 FIEM-ERKGYLPNVETYNLLIAGYCDVG-MLDSALDTFNDMKTDAIRWNFATFNTLIRGL 398
Query: 561 LVQRGFKDALSLLCLMKD----HGFPPFVDPF---IKYVSKSGTSDDAIAFLKGMTSKRF 613
+ D L +L +M+D HG +DP+ I K +DA+ FL M K F
Sbjct: 399 SIGGRTDDGLKILEMMQDSDTVHG--ARIDPYNCVIYGFYKENRWEDALEFLLKM-EKLF 455
Query: 614 P 614
P
Sbjct: 456 P 456
Score = 33.1 bits (74), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 40/86 (46%)
Query: 422 GRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMW 481
G++ E +++ M G++ S+ + + K +F++ M G + +
Sbjct: 507 GKIEESLELINDMVTRGYLPRSSTFNAVIIGFCKQDKVMNGIKFVEDMAERGCVPDTESY 566
Query: 482 VSLIKGHCVAGDLDKAADCFQKMVEK 507
L++ CV GD+ KA F +MVEK
Sbjct: 567 NPLLEELCVKGDIQKAWLLFSRMVEK 592
>sp|Q9M302|PP270_ARATH Pentatricopeptide repeat-containing protein At3g48810
OS=Arabidopsis thaliana GN=At3g48810 PE=2 SV=1
Length = 659
Score = 65.9 bits (159), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 82/398 (20%), Positives = 151/398 (37%), Gaps = 53/398 (13%)
Query: 284 ALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVL 343
AL FF+ S KH ++ M L + +D +L +M+ +G+ + + V+
Sbjct: 59 ALHFFKSIANSNLFKHTPLTFEVMIRKLAMDGQVDSVQYLLQQMKLQGFHCSEDLFISVI 118
Query: 344 GRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENG 403
+ + + + AV+++ PSV +L ++ ++ M V R + +G
Sbjct: 119 SVYRQVGLAERAVEMFYRIKEFGCDPSVKIYNHVLDTLLGENRIQM--IYMVYRDMKRDG 176
Query: 404 ---NVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKD 460
NV T N +LKAL ++ K+L M G + + + + G
Sbjct: 177 FEPNVFT---YNVLLKALCKNNKVDGAKKLLVEMSNKGCCPDAVSYTTVISSMCEVGLVK 233
Query: 461 EANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLL 520
E E + E S ++ +LI G C D A + ++MVEK G S + L
Sbjct: 234 EGRELAERFEPVVS-----VYNALINGLCKEHDYKGAFELMREMVEK-GISPNVISYSTL 287
Query: 521 VNTYCS-----------------------------------KNRAIDACKFVHNCVREYD 545
+N C+ + DA + +R +
Sbjct: 288 INVLCNSGQIELAFSFLTQMLKRGCHPNIYTLSSLVKGCFLRGTTFDALDLWNQMIRGFG 347
Query: 546 LKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPF---IKYVSKSGTSDDAI 602
L+P Y L++ A+S+ M++ G P + + I +K G+ D A+
Sbjct: 348 LQPNVVAYNTLVQGFCSHGNIVKAVSVFSHMEEIGCSPNIRTYGSLINGFAKRGSLDGAV 407
Query: 603 AFL-KGMTSKRFPSMSVVLCLFAAFFQARRHSEAQDLL 639
K +TS P++ V + A + + EA+ L+
Sbjct: 408 YIWNKMLTSGCCPNVVVYTNMVEALCRHSKFKEAESLI 445
Score = 39.7 bits (91), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 109/543 (20%), Positives = 195/543 (35%), Gaps = 109/543 (20%)
Query: 134 LKVLKNL--ESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLVDVMK 191
L V+K L ES A FF + + + T+ +M+R + + G V L+ MK
Sbjct: 44 LDVVKRLRQESCVPLALHFFKSIANSNLFKHTPLTFEVMIRKLAMDGQVDSVQYLLQQMK 103
Query: 192 KKGYGVASHVRNKMTEKFEKEGLESDLEKLKGIFATGSIDNSIEKVASRICKVVRSDIWG 251
+G+ + + + + + GL E+ +F
Sbjct: 104 LQGFHCSEDLFISVISVYRQVGLA---ERAVEMF-------------------------- 134
Query: 252 DDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIF--FRWAEESGFVKHDESSYNAMAS 309
++++ S + V+D L E + +I+ +R + GF + + +YN +
Sbjct: 135 ----YRIKEFGCDPSVKIYNHVLDTLLGENRIQMIYMVYRDMKRDGF-EPNVFTYNVLLK 189
Query: 310 VLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDL---YEFAMACK 366
L + + +D K+L EM +KG + + V+ E +VKE +L +E ++
Sbjct: 190 ALCKNNKVDGAKKLLVEMSNKGCCPDAVSYTTVISSMCEVGLVKEGRELAERFEPVVSVY 249
Query: 367 NKPSVNCC-------TFLLRKIVVSKQLDMRL--FSKVVRVFRENGNV------LTDAM- 410
N C F L + +V K + + +S ++ V +G + LT +
Sbjct: 250 NALINGLCKEHDYKGAFELMREMVEKGISPNVISYSTLINVLCNSGQIELAFSFLTQMLK 309
Query: 411 ---------LNSVLKALISVGRMGECNKILKAMEEG-GFIASSNMKSKIAFRLSSAGKKD 460
L+S++K G + + M G G + + + S G
Sbjct: 310 RGCHPNIYTLSSLVKGCFLRGTTFDALDLWNQMIRGFGLQPNVVAYNTLVQGFCSHGNIV 369
Query: 461 EANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLL 520
+A HME G + + SLI G G LD A + KM
Sbjct: 370 KAVSVFSHMEEIGCSPNIRTYGSLINGFAKRGSLDGAVYIWNKM---------------- 413
Query: 521 VNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHG 580
+ + C N + Y +++ L FK+A SL+ +M
Sbjct: 414 LTSGCCPNVVV---------------------YTNMVEALCRHSKFKEAESLIEIMSKEN 452
Query: 581 FPPFV---DPFIKYVSKSGTSDDAIAFLKGMTSKRF--PSMSVVLCLFAAFFQARRHSEA 635
P V + FIK + +G D A + M + P++ L +A R EA
Sbjct: 453 CAPSVPTFNAFIKGLCDAGRLDWAEKVFRQMEQQHRCPPNIVTYNELLDGLAKANRIEEA 512
Query: 636 QDL 638
L
Sbjct: 513 YGL 515
>sp|Q8L844|PP413_ARATH Pentatricopeptide repeat-containing protein At5g42310,
mitochondrial OS=Arabidopsis thaliana GN=At5g42310 PE=2
SV=1
Length = 709
Score = 65.5 bits (158), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 107/523 (20%), Positives = 209/523 (39%), Gaps = 49/523 (9%)
Query: 121 LELSGVVFTHEMVLKVLKNLESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLV 180
L+ + F++E++ +L + + + + + L + + L+ TYN ++ + +
Sbjct: 157 LQKHNLCFSYELLYSILIH---ALGRSEKLYEAFLLSQKQTLTPLTYNALIGACARNNDI 213
Query: 181 QEFWGLVDVMKKKGYGVASHVRNKMTEKFEKEGLESDLEKLKGIFATGSIDNSIEKVAS- 239
++ L+ M++ GY +SD + + + N I+ V
Sbjct: 214 EKALNLIAKMRQDGY-------------------QSDFVNYSLVIQSLTRSNKIDSVMLL 254
Query: 240 RICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKH 299
R+ K ++ER +L+V ND++ K GD P KAL A+ +G +
Sbjct: 255 RLYK---------EIERDKLELDVQLVNDIIMGFA-KSGD-PSKALQLLGMAQATG-LSA 302
Query: 300 DESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLY 359
++ ++ S L + +E+R G + +L + + +K+A +
Sbjct: 303 KTATLVSIISALADSGRTLEAEALFEELRQSGIKPRTRAYNALLKGYVKTGPLKDAESMV 362
Query: 360 EFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALI 419
P + + L+ V + + + +++V E G+V ++ + S L L
Sbjct: 363 SEMEKRGVSPDEHTYSLLIDAYVNAGRWES---ARIVLKEMEAGDVQPNSFVFSRL--LA 417
Query: 420 SVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGK---KDEANEFMDHMEASGSDV 476
GE K + ++E I + + + GK D A D M + G +
Sbjct: 418 GFRDRGEWQKTFQVLKEMKSIGVKPDRQFYNVVIDTFGKFNCLDHAMTTFDRMLSEGIEP 477
Query: 477 GDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKF 536
W +LI HC G A + F+ M E+ G ++++N+Y + R D +
Sbjct: 478 DRVTWNTLIDCHCKHGRHIVAEEMFEAM-ERRGCLPCATTYNIMINSYGDQERWDDMKRL 536
Query: 537 VHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPP---FVDPFIKYVS 593
+ ++ + P T+ L+ F DA+ L MK G P + I +
Sbjct: 537 LGK-MKSQGILPNVVTHTTLVDVYGKSGRFNDAIECLEEMKSVGLKPSSTMYNALINAYA 595
Query: 594 KSGTSDDAIAFLKGMTSKRF-PSMSVVLCLFAAFFQARRHSEA 635
+ G S+ A+ + MTS PS+ + L AF + RR +EA
Sbjct: 596 QRGLSEQAVNAFRVMTSDGLKPSLLALNSLINAFGEDRRDAEA 638
Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 95/487 (19%), Positives = 184/487 (37%), Gaps = 82/487 (16%)
Query: 84 MICSYSSEPAMEQKESDFTVVSDIFYKFSDVNDISKQLEL------SGVVFTHEMVLKVL 137
M+ E ++ E D +V+DI F+ D SK L+L +G+ ++ ++
Sbjct: 252 MLLRLYKEIERDKLELDVQLVNDIIMGFAKSGDPSKALQLLGMAQATGLSAKTATLVSII 311
Query: 138 KNLESSPD--EARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLVDVMKKKGY 195
L S EA F L + + ++ YN +L+ G +++ +V M+K+G
Sbjct: 312 SALADSGRTLEAEALFE-ELRQSGIKPRTRAYNALLKGYVKTGPLKDAESMVSEMEKRGV 370
Query: 196 GVASHVRNKMTEKFEKEG-LESDLEKLKGIFATGSIDNSIEKVASRICKVVRSDIWGDDV 254
H + + + + G ES ++V ++ DV
Sbjct: 371 SPDEHTYSLLIDAYVNAGRWES-------------------------ARIVLKEMEAGDV 405
Query: 255 ERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGRE 314
+ + FS L F + E +K + + G VK D YN + G+
Sbjct: 406 QPN----SFVFSRLLAGF---RDRGEWQKTFQVLKEMKSIG-VKPDRQFYNVVIDTFGKF 457
Query: 315 DCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCC 374
+C+D D M S+G E +R +D + CK+
Sbjct: 458 NCLDHAMTTFDRMLSEGIE-------------PDRVTWNTLIDCH-----CKHG------ 493
Query: 375 TFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAM 434
R IV + + G + N ++ + R + ++L M
Sbjct: 494 ----RHIVAEEMFE---------AMERRGCLPCATTYNIMINSYGDQERWDDMKRLLGKM 540
Query: 435 EEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDL 494
+ G + + + + +G+ ++A E ++ M++ G M+ +LI + G
Sbjct: 541 KSQGILPNVVTHTTLVDVYGKSGRFNDAIECLEEMKSVGLKPSSTMYNALINAYAQRGLS 600
Query: 495 DKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYE 554
++A + F+ M +G + A++ L+N + R +A V ++E +KP TY
Sbjct: 601 EQAVNAFRVMT-SDGLKPSLLALNSLINAFGEDRRDAEAFA-VLQYMKENGVKPDVVTYT 658
Query: 555 ELIKNLL 561
L+K L+
Sbjct: 659 TLMKALI 665
>sp|Q9LFQ4|PP383_ARATH Pentatricopeptide repeat-containing protein At5g15010,
mitochondrial OS=Arabidopsis thaliana GN=At5g15010 PE=2
SV=2
Length = 572
Score = 65.5 bits (158), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 101/455 (22%), Positives = 192/455 (42%), Gaps = 54/455 (11%)
Query: 231 DNSIEKVASRICKVVRSDIWGD--DVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFF 288
D + + +I K+V+ D D ++ +L + +V SN+LV ++ ++ ++ + A FF
Sbjct: 90 DELVSEDVGKISKLVK-DCGSDRKELRNKLEECDVKPSNELVVEILSRVRNDWETAFTFF 148
Query: 289 RWA-EESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEM-EMETCVKVLGRF 346
WA ++ G+V+ Y++M S+LG+ D W ++DEMR + +T + ++ ++
Sbjct: 149 VWAGKQQGYVR-SVREYHSMISILGKMRKFDTAWTLIDEMRKFSPSLVNSQTLLIMIRKY 207
Query: 347 SERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQL----------------DMR 390
+ V +A++ + K + ++ LL + K + D +
Sbjct: 208 CAVHDVGKAINTFHAYKRFKLEMGIDDFQSLLSALCRYKNVSDAGHLIFCNKDKYPFDAK 267
Query: 391 LFSKVV--------------RVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKA--- 433
F+ V+ RV+ E GNV + S + + G NK+LK
Sbjct: 268 SFNIVLNGWCNVIGSPREAERVWMEMGNVGVKHDVVSYSSMISCYSKGGSLNKVLKLFDR 327
Query: 434 MEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEAS-GSDVGDKMWVSLIKGHCVAG 492
M++ + + + L+ A EA M ME G + + SLIK C A
Sbjct: 328 MKKECIEPDRKVYNAVVHALAKASFVSEARNLMKTMEEEKGIEPNVVTYNSLIKPLCKAR 387
Query: 493 DLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCV---REYDLKPW 549
++A F +M+EK + + TY + R + + V + R+ +P
Sbjct: 388 KTEEAKQVFDEMLEK--------GLFPTIRTYHAFMRILRTGEEVFELLAKMRKMGCEPT 439
Query: 550 HTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPFIKYVSK---SGTSDDAIAFLK 606
TY LI+ L R F + L L MK+ P + +I + +G ++A + K
Sbjct: 440 VETYIMLIRKLCRWRDFDNVLLLWDEMKEKTVGPDLSSYIVMIHGLFLNGKIEEAYGYYK 499
Query: 607 GMTSKRFPSMSVVLCLFAAFFQARRHSEAQDLLSK 641
M K V + ++F ++++E + SK
Sbjct: 500 EMKDKGMRPNENVEDMIQSWFSGKQYAEQRITDSK 534
Score = 43.9 bits (102), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 94/443 (21%), Positives = 170/443 (38%), Gaps = 80/443 (18%)
Query: 86 CSYSSEPAMEQKESDFTVVSDIFYKFSDVNDISKQLELSGVVFTHEMVLKVLKNLESSPD 145
CS S E E +V D SD ++ +LE V ++E+V+++L + + +
Sbjct: 86 CSISDELVSEDVGKISKLVKDCG---SDRKELRNKLEECDVKPSNELVVEILSRVRNDWE 142
Query: 146 EARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRNKM 205
A FF W +++ S + Y+ M+ I+G W L+D M+K + + N
Sbjct: 143 TAFTFFVWAGKQQGYVRSVREYHSMISILGKMRKFDTAWTLIDEMRK----FSPSLVNSQ 198
Query: 206 TEKFEKEGLESDLEKLKGIFATGSIDNSIEKVASRICKVVRSDIWGDDVERQLRDL---- 261
T L + K + G N+ K + ++ DD + L L
Sbjct: 199 T-------LLIMIRKYCAVHDVGKAINTFHAY-----KRFKLEMGIDDFQSLLSALCRYK 246
Query: 262 NVTFSNDLVKFVVDKLGDEPKKALIFFR---------------WAEESGF-VKHDESSYN 305
NV+ + L+ DK + K I W E VKHD SY+
Sbjct: 247 NVSDAGHLIFCNKDKYPFDAKSFNIVLNGWCNVIGSPREAERVWMEMGNVGVKHDVVSYS 306
Query: 306 AMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMAC 365
+M S + +++ K+ D M+ + E + + V+ ++ + V EA +
Sbjct: 307 SMISCYSKGGSLNKVLKLFDRMKKECIEPDRKVYNAVVHALAKASFVSEARN-------- 358
Query: 366 KNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMG 425
L++ + K ++ NV+T NS++K L +
Sbjct: 359 -----------LMKTMEEEKGIE--------------PNVVT---YNSLIKPLCKARKTE 390
Query: 426 ECNKILKAMEEGGFIASSNMKSKIAF-RLSSAGKKDEANEFMDHMEASGSDVGDKMWVSL 484
E ++ M E G + +++ AF R+ G +E E + M G + + ++ L
Sbjct: 391 EAKQVFDEMLEKGLFPT--IRTYHAFMRILRTG--EEVFELLAKMRKMGCEPTVETYIML 446
Query: 485 IKGHCVAGDLDKAADCFQKMVEK 507
I+ C D D + +M EK
Sbjct: 447 IRKLCRWRDFDNVLLLWDEMKEK 469
>sp|Q9SAK0|PP132_ARATH Pentatricopeptide repeat-containing protein At1g79490,
mitochondrial OS=Arabidopsis thaliana GN=EMB2217 PE=2
SV=1
Length = 836
Score = 65.1 bits (157), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 85/414 (20%), Positives = 171/414 (41%), Gaps = 49/414 (11%)
Query: 239 SRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVD-KLGDEPKKALIFFRWAE-ESGF 296
++I +VV+ WG ++E QL L F ++V K+ E AL FRWA+ + +
Sbjct: 144 AKIVEVVQRWKWGPELETQLDKLQ--FVPNMVHITQSLKIVKEVDAALSLFRWAKKQPWY 201
Query: 297 VKHDE-------------------------------------SSYNAMASVLGREDCIDR 319
+ DE ++YN + L + + ++
Sbjct: 202 LPSDECYVVLFDGLNQGRDFVGIQSLFEEMVQDSSSHGDLSFNAYNQVIQYLAKAEKLEV 261
Query: 320 FWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLR 379
+ + + G +++ +T ++ F + + +A ++YE + + ++
Sbjct: 262 AFCCFKKAQESGCKIDTQTYNNLMMLFLNKGLPYKAFEIYESMEKTDSLLDGSTYELIIP 321
Query: 380 KIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGF 439
+ S +LD K+ + +E + ++ +S++ ++ GR+ K+ M+ G
Sbjct: 322 SLAKSGRLDAAF--KLFQQMKERKLRPSFSVFSSLVDSMGKAGRLDTSMKVYMEMQGFGH 379
Query: 440 IASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAAD 499
S+ M + + AGK D A D M+ SG ++ +I+ H +G L+ A
Sbjct: 380 RPSATMFVSLIDSYAKAGKLDTALRLWDEMKKSGFRPNFGLYTMIIESHAKSGKLEVAMT 439
Query: 500 CFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKN 559
F+ M EK G L+ + + +D+ ++N + L+P ++Y L+
Sbjct: 440 VFKDM-EKAGFLPTPSTYSCLLEMHAGSGQ-VDSAMKIYNSMTNAGLRPGLSSYISLLTL 497
Query: 560 LLVQRGFKDALSLLCLMKDHGFPPFV---DPFIKYVSKSGTSDDAIAFLKGMTS 610
L +R A +L MK G+ V D + Y+ K + D A+ +L+ M S
Sbjct: 498 LANKRLVDVAGKILLEMKAMGYSVDVCASDVLMIYI-KDASVDLALKWLRFMGS 550
>sp|Q9LFF1|PP281_ARATH Pentatricopeptide repeat-containing protein At3g53700,
chloroplastic OS=Arabidopsis thaliana GN=MEE40 PE=2 SV=1
Length = 754
Score = 64.7 bits (156), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 76/316 (24%), Positives = 132/316 (41%), Gaps = 15/316 (4%)
Query: 300 DESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLY 359
D +YN++ S L + + +VLD+M ++ T ++ + N V+EA +L
Sbjct: 329 DVYTYNSVISGLCKLGEVKEAVEVLDQMITRDCSPNTVTYNTLISTLCKENQVEEATELA 388
Query: 360 EFAMACKNKPSVNCCTF--LLRKIVVSK--QLDMRLFSKVVRVFRENGNVLTDAMLNSVL 415
+ P V CTF L++ + +++ ++ M LF ++ R G + N ++
Sbjct: 389 RVLTSKGILPDV--CTFNSLIQGLCLTRNHRVAMELFEEM----RSKGCEPDEFTYNMLI 442
Query: 416 KALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSD 475
+L S G++ E +LK ME G S + + A K EA E D ME G
Sbjct: 443 DSLCSKGKLDEALNMLKQMELSGCARSVITYNTLIDGFCKANKTREAEEIFDEMEVHGVS 502
Query: 476 VGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACK 535
+ +LI G C + ++ AA +M+ EG Y + L+ +C A
Sbjct: 503 RNSVTYNTLIDGLCKSRRVEDAAQLMDQMI-MEGQKPDKYTYNSLLTHFCRGGDIKKAAD 561
Query: 536 FVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGF---PPFVDPFIKYV 592
V + +P TY LI L + A LL ++ G P +P I+ +
Sbjct: 562 IVQ-AMTSNGCEPDIVTYGTLISGLCKAGRVEVASKLLRSIQMKGINLTPHAYNPVIQGL 620
Query: 593 SKSGTSDDAIAFLKGM 608
+ + +AI + M
Sbjct: 621 FRKRKTTEAINLFREM 636
Score = 60.5 bits (145), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 90/447 (20%), Positives = 170/447 (38%), Gaps = 82/447 (18%)
Query: 273 VVDKLGDEP--KKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSK 330
++D L +P AL F A + + + Y + LGR D K+L++M+S
Sbjct: 53 LLDSLRSQPDDSAALRLFNLASKKPNFSPEPALYEEILLRLGRSGSFDDMKKILEDMKSS 112
Query: 331 GYEMEMET---CVKVLGRFSERNMVKEAVD--LYEFAMACKN------------------ 367
EM T ++ +F ++ + VD + EF +
Sbjct: 113 RCEMGTSTFLILIESYAQFELQDEILSVVDWMIDEFGLKPDTHFYNRMLNLLVDGNSLKL 172
Query: 368 -------------KPSVNCCTFLLRKIVVSKQL-----------------DMRLFSKVVR 397
KP V+ L++ + + QL D + F+ V++
Sbjct: 173 VEISHAKMSVWGIKPDVSTFNVLIKALCRAHQLRPAILMLEDMPSYGLVPDEKTFTTVMQ 232
Query: 398 VFRENGNV----------------LTDAMLNSVLKALISVGRMGECNKILKAME-EGGFI 440
+ E G++ ++ +N ++ GR+ + ++ M + GF
Sbjct: 233 GYIEEGDLDGALRIREQMVEFGCSWSNVSVNVIVHGFCKEGRVEDALNFIQEMSNQDGFF 292
Query: 441 ASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADC 500
+ + L AG A E MD M G D + S+I G C G++ +A +
Sbjct: 293 PDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEV 352
Query: 501 FQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNL 560
+M+ ++ + + + L++T C +N+ +A + + + P T+ LI+ L
Sbjct: 353 LDQMITRDCSPNT-VTYNTLISTLCKENQVEEATELAR-VLTSKGILPDVCTFNSLIQGL 410
Query: 561 LVQRGFKDALSLLCLMKDHGFPPFVDPF-----IKYVSKSGTSDDAIAFLKGMT-SKRFP 614
+ R + A+ L M+ G P D F I + G D+A+ LK M S
Sbjct: 411 CLTRNHRVAMELFEEMRSKGCEP--DEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCAR 468
Query: 615 SMSVVLCLFAAFFQARRHSEAQDLLSK 641
S+ L F +A + EA+++ +
Sbjct: 469 SVITYNTLIDGFCKANKTREAEEIFDE 495
Score = 46.6 bits (109), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 87/458 (18%), Positives = 173/458 (37%), Gaps = 86/458 (18%)
Query: 166 TYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRNKMTEKFEKEGLESDLEKLKGIF 225
T+N ++ + G V+ ++DVM ++GY + N + + G+
Sbjct: 297 TFNTLVNGLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSV---------------ISGLC 341
Query: 226 ATGSIDNSIEKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKAL 285
G + ++E + + R VT+ N L+ + + ++ ++A
Sbjct: 342 KLGEVKEAVE-------------VLDQMITRDCSPNTVTY-NTLISTLCKE--NQVEEAT 385
Query: 286 IFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKV----LDEMRSKGYEMEMETCVK 341
R G + D ++N++ L C+ R +V +EMRSKG E + T
Sbjct: 386 ELARVLTSKGILP-DVCTFNSLIQGL----CLTRNHRVAMELFEEMRSKGCEPDEFTYNM 440
Query: 342 VLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRE 401
++ + + EA+++ KQ+++ ++ V +
Sbjct: 441 LIDSLCSKGKLDEALNML-------------------------KQMELSGCARSVITY-- 473
Query: 402 NGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDE 461
N+++ + E +I ME G +S + + L + + ++
Sbjct: 474 ----------NTLIDGFCKANKTREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVED 523
Query: 462 ANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLV 521
A + MD M G + SL+ C GD+ KAAD Q M G L+
Sbjct: 524 AAQLMDQMIMEGQKPDKYTYNSLLTHFCRGGDIKKAADIVQAMTSN-GCEPDIVTYGTLI 582
Query: 522 NTYCSKNRAIDACKFVHNC-VREYDLKPWHTTYEELIKNLLVQRGFKDALSLLC-LMKDH 579
+ C R A K + + ++ +L P Y +I+ L +R +A++L +++ +
Sbjct: 583 SGLCKAGRVEVASKLLRSIQMKGINLTPH--AYNPVIQGLFRKRKTTEAINLFREMLEQN 640
Query: 580 GFPP----FVDPFIKYVSKSGTSDDAIAFLKGMTSKRF 613
PP + F + G +A+ FL + K F
Sbjct: 641 EAPPDAVSYRIVFRGLCNGGGPIREAVDFLVELLEKGF 678
>sp|Q7X6A5|PPR81_ARATH Pentatricopeptide repeat-containing protein At1g55630
OS=Arabidopsis thaliana GN=At1g55630 PE=2 SV=1
Length = 477
Score = 64.7 bits (156), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 85/386 (22%), Positives = 150/386 (38%), Gaps = 16/386 (4%)
Query: 238 ASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVV---------DKLGDEPKKALIFF 288
ASR+ ++ D G + + L +LNV+ S LV+ V+ D K A FF
Sbjct: 80 ASRVLDTLQQDCPGFNTKSALDELNVSISGLLVREVLVGILRTLSFDNKTRCAKLAYKFF 139
Query: 289 RWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSE 348
W +H + Y+ + + +++DEM GY T ++ E
Sbjct: 140 VWCGGQENFRHTANCYHLLMKIFAECGEYKAMCRLIDEMIKDGYPTTACTFNLLICTCGE 199
Query: 349 RNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTD 408
+ ++ V+ + + +P + +L ++ KQ +L V E+G
Sbjct: 200 AGLARDVVEQFIKSKTFNYRPYKHSYNAILHSLLGVKQY--KLIDWVYEQMLEDGFTPDV 257
Query: 409 AMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDH 468
N V+ A +G+ ++L M + GF + + L++ K A ++H
Sbjct: 258 LTYNIVMFANFRLGKTDRLYRLLDEMVKDGFSPDLYTYNILLHHLATGNKPLAALNLLNH 317
Query: 469 MEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKN 528
M G + G + +LI G AG L+ A F K G + +++ Y S
Sbjct: 318 MREVGVEPGVIHFTTLIDGLSRAGKLE-ACKYFMDETVKVGCTPDVVCYTVMITGYISGG 376
Query: 529 RAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGF-PPFV-- 585
A + + L P TY +I+ + FK+A +LL M+ G P FV
Sbjct: 377 ELEKAEEMFKEMTEKGQL-PNVFTYNSMIRGFCMAGKFKEACALLKEMESRGCNPNFVVY 435
Query: 586 DPFIKYVSKSGTSDDAIAFLKGMTSK 611
+ + +G +A +K M K
Sbjct: 436 STLVNNLKNAGKVLEAHEVVKDMVEK 461
Score = 50.1 bits (118), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 76/341 (22%), Positives = 135/341 (39%), Gaps = 21/341 (6%)
Query: 147 ARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRNKMT 206
A +FF W +E+ R ++ Y+L+++I G + L+D M K GY + N +
Sbjct: 135 AYKFFVWCGGQENFRHTANCYHLLMKIFAECGEYKAMCRLIDEMIKDGYPTTACTFNLLI 194
Query: 207 EKFEKEGLESDLEKL---KGIFATGSIDNSIEKVASRICKVVRSDIWGDDVERQLRDLNV 263
+ GL D+ + F +S + + V + + E+ L D
Sbjct: 195 CTCGEAGLARDVVEQFIKSKTFNYRPYKHSYNAILHSLLGVKQYKLIDWVYEQMLEDGFT 254
Query: 264 --TFSNDLVKFVVDKLGDEPKKALIFFRWAEE---SGFVKHDESSYNAMASVLGREDCID 318
+ ++V F +LG + +R +E GF D +YN + L +
Sbjct: 255 PDVLTYNIVMFANFRLGKTDR----LYRLLDEMVKDGF-SPDLYTYNILLHHLATGNKPL 309
Query: 319 RFWKVLDEMRSKGYE---MEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCT 375
+L+ MR G E + T + L R + K +D + C P V C T
Sbjct: 310 AALNLLNHMREVGVEPGVIHFTTLIDGLSRAGKLEACKYFMD-ETVKVGCT--PDVVCYT 366
Query: 376 FLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAME 435
++ + +L+ ++ + E G + NS+++ G+ E +LK ME
Sbjct: 367 VMITGYISGGELEKA--EEMFKEMTEKGQLPNVFTYNSMIRGFCMAGKFKEACALLKEME 424
Query: 436 EGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDV 476
G + + S + L +AGK EA+E + M G V
Sbjct: 425 SRGCNPNFVVYSTLVNNLKNAGKVLEAHEVVKDMVEKGHYV 465
>sp|Q9FNG8|PP366_ARATH Putative pentatricopeptide repeat-containing protein At5g06400,
mitochondrial OS=Arabidopsis thaliana GN=At5g06400 PE=3
SV=1
Length = 1030
Score = 63.2 bits (152), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 77/356 (21%), Positives = 136/356 (38%), Gaps = 48/356 (13%)
Query: 237 VASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGF 296
V I VVR D +E +L L+ F ++V+ V+ + P A+ FF W ++
Sbjct: 125 VVHEITSVVRGDDVLVSMEDRLEKLSFRFEPEIVENVLKRCFKVPHLAMRFFNWVKQKDG 184
Query: 297 VKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAV 356
H YN M S+ G +D +++ EM G + ++ T ++ + + + + +
Sbjct: 185 FSHRVGIYNTMLSIAGEARNLDMVDELVSEMEKNGCDKDIRTWTILISVYGKAKKIGKGL 244
Query: 357 DLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLK 416
++E R++G L N +++
Sbjct: 245 LVFE-------------------------------------KMRKSGFELDATAYNIMIR 267
Query: 417 ALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHM----EAS 472
+L GR + K M E G + ++ + K D D M E S
Sbjct: 268 SLCIAGRGDLALEFYKEMMEKGITFGLRTYKMLLDCIAKSEKVDVVQSIADDMVRICEIS 327
Query: 473 GSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAID 532
D + L+K CV+G + +A + +++ KE A Y ++LV C NR +D
Sbjct: 328 EHDA----FGYLLKSFCVSGKIKEALELIRELKNKEMCLDAKY-FEILVKGLCRANRMVD 382
Query: 533 ACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPF 588
A + V + ++ L Y +I L Q AL ++K G PP V +
Sbjct: 383 ALEIV-DIMKRRKLDD-SNVYGIIISGYLRQNDVSKALEQFEVIKKSGRPPRVSTY 436
Score = 60.8 bits (146), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 91/411 (22%), Positives = 162/411 (39%), Gaps = 19/411 (4%)
Query: 241 ICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHD 300
IC+V+ S + + L V F+ +LV V+ + L FF W + KH+
Sbjct: 618 ICRVLSSSRDWERTQEALEKSTVQFTPELVVEVLRHAKIQGNAVLRFFSWVGKRNGYKHN 677
Query: 301 ESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYE 360
+YN V G + + EMR +G + +T ++ ++ + A+ ++
Sbjct: 678 SEAYNMSIKVAGCGKDFKQMRSLFYEMRRQGCLITQDTWAIMIMQYGRTGLTNIAIRTFK 737
Query: 361 FAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRE---NGNVLTDAMLNSVLKA 417
PS + L+ + K R + R FRE +G V ++ L
Sbjct: 738 EMKDMGLIPSSSTFKCLITVLCEKKG---RNVEEATRTFREMIRSGFVPDRELVQDYLGC 794
Query: 418 LISVGRMGECNKILKAMEEGGFIASSNMKSKIAFR-LSSAGKKDEANEFMDHMEASGSDV 476
L VG + L ++ + GF + + I R L GK +EA + E S +
Sbjct: 795 LCEVGNTKDAKSCLDSLGKIGFPVT--VAYSIYIRALCRIGKLEEALSELASFEGERSLL 852
Query: 477 GDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKF 536
+ S++ G GDL KA D M KE + G + + Y K + ++ K
Sbjct: 853 DQYTYGSIVHGLLQRGDLQKALDKVNSM--KEIGTKPGVHVYTSLIVYFFKEKQLE--KV 908
Query: 537 VHNC--VREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPFIKYVS- 593
+ C + +P TY +I + ++A + M++ G P + K+++
Sbjct: 909 LETCQKMEGESCEPSVVTYTAMICGYMSLGKVEEAWNAFRNMEERGTSPDFKTYSKFINC 968
Query: 594 --KSGTSDDAIAFLKGMTSKRF-PSMSVVLCLFAAFFQARRHSEAQDLLSK 641
++ S+DA+ L M K PS +F + +H A+ L K
Sbjct: 969 LCQACKSEDALKLLSEMLDKGIAPSTINFRTVFYGLNREGKHDLARIALQK 1019
Score = 46.6 bits (109), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 88/413 (21%), Positives = 156/413 (37%), Gaps = 79/413 (19%)
Query: 128 FTHEMVLKVLKNLESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLV 187
F E+V VLK P A RFFNWV +K+ YN ML I G + LV
Sbjct: 153 FEPEIVENVLKRCFKVPHLAMRFFNWVKQKDGFSHRVGIYNTMLSIAGEARNLDMVDELV 212
Query: 188 DVMKKKG--------------YGVASHVRNKMT--EKFEKEGLESDLEKLKGIFATGSID 231
M+K G YG A + + EK K G E D + +
Sbjct: 213 SEMEKNGCDKDIRTWTILISVYGKAKKIGKGLLVFEKMRKSGFELDATAYNIMIRS---- 268
Query: 232 NSIEKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALI----- 286
+C R D+ + +++ + +TF K ++D + K ++
Sbjct: 269 ---------LCIAGRGDL-ALEFYKEMMEKGITFGLRTYKMLLDCIAKSEKVDVVQSIAD 318
Query: 287 -FFRWAEESGFVKHDESSY---------------NAMASVLGREDCID-RFWKVLDEMRS 329
R E S +HD Y + + +E C+D +++++L +
Sbjct: 319 DMVRICEIS---EHDAFGYLLKSFCVSGKIKEALELIRELKNKEMCLDAKYFEILVKGLC 375
Query: 330 KGYEM----EMETCVK------------VLGRFSERNMVKEAVDLYEFAMACKNKPSVNC 373
+ M E+ +K ++ + +N V +A++ +E P V+
Sbjct: 376 RANRMVDALEIVDIMKRRKLDDSNVYGIIISGYLRQNDVSKALEQFEVIKKSGRPPRVST 435
Query: 374 CTFLLRKIVVSKQLD--MRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKIL 431
T +++ + KQ + LF++++ ENG + +V+ + R+ E K+
Sbjct: 436 YTEIMQHLFKLKQFEKGCNLFNEMI----ENGIEPDSVAITAVVAGHLGQNRVAEAWKVF 491
Query: 432 KAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKM--WV 482
+MEE G + S L + + DE + + M AS + D + WV
Sbjct: 492 SSMEEKGIKPTWKSYSIFVKELCRSSRYDEIIKIFNQMHASKIVIRDDIFSWV 544
Score = 45.4 bits (106), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 51/94 (54%)
Query: 121 LELSGVVFTHEMVLKVLKNLESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLV 180
LE S V FT E+V++VL++ + + RFF+WV ++ + +S+ YN+ +++ G
Sbjct: 635 LEKSTVQFTPELVVEVLRHAKIQGNAVLRFFSWVGKRNGYKHNSEAYNMSIKVAGCGKDF 694
Query: 181 QEFWGLVDVMKKKGYGVASHVRNKMTEKFEKEGL 214
++ L M+++G + M ++ + GL
Sbjct: 695 KQMRSLFYEMRRQGCLITQDTWAIMIMQYGRTGL 728
>sp|Q8S8P6|PP180_ARATH Pentatricopeptide repeat-containing protein At2g32630
OS=Arabidopsis thaliana GN=At2g32630 PE=3 SV=1
Length = 624
Score = 62.4 bits (150), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 66/295 (22%), Positives = 121/295 (41%), Gaps = 7/295 (2%)
Query: 322 KVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKI 381
K+ DEMR +G E ++ ++ + +K A L++ PS L+
Sbjct: 315 KLFDEMRERGIESDVHVYTSLISWNCRKGNMKRAFLLFDELTEKGLSPSSYTYGALIDG- 373
Query: 382 VVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIA 441
V K +M ++ + G +T + N+++ G + E + I ME+ GF A
Sbjct: 374 -VCKVGEMGAAEILMNEMQSKGVNITQVVFNTLIDGYCRKGMVDEASMIYDVMEQKGFQA 432
Query: 442 SSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCF 501
+ IA + + DEA +++ M G + + +LI +C G++++A F
Sbjct: 433 DVFTCNTIASCFNRLKRYDEAKQWLFRMMEGGVKLSTVSYTNLIDVYCKEGNVEEAKRLF 492
Query: 502 QKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLL 561
+M K G ++++ YC + + +A K N + + P TY LI
Sbjct: 493 VEMSSK-GVQPNAITYNVMIYAYCKQGKIKEARKLRAN-MEANGMDPDSYTYTSLIHGEC 550
Query: 562 VQRGFKDALSLLCLMKDHGFPPFVDPF---IKYVSKSGTSDDAIAFLKGMTSKRF 613
+ +A+ L M G + I +SK+G SD+A M K +
Sbjct: 551 IADNVDEAMRLFSEMGLKGLDQNSVTYTVMISGLSKAGKSDEAFGLYDEMKRKGY 605
Score = 50.1 bits (118), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 49/229 (21%), Positives = 95/229 (41%), Gaps = 15/229 (6%)
Query: 282 KKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVK 341
K+A + F E G + +Y A+ + + + +++EM+SKG +
Sbjct: 346 KRAFLLFDELTEKG-LSPSSYTYGALIDGVCKVGEMGAAEILMNEMQSKGVNITQVVFNT 404
Query: 342 VLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFL------LRKIVVSKQLDMRLFSKV 395
++ + + MV EA +Y+ + V C + L++ +KQ R+
Sbjct: 405 LIDGYCRKGMVDEASMIYDVMEQKGFQADVFTCNTIASCFNRLKRYDEAKQWLFRMM--- 461
Query: 396 VRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSS 455
E G L+ +++ G + E ++ M G ++ + + +
Sbjct: 462 -----EGGVKLSTVSYTNLIDVYCKEGNVEEAKRLFVEMSSKGVQPNAITYNVMIYAYCK 516
Query: 456 AGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKM 504
GK EA + +MEA+G D + SLI G C+A ++D+A F +M
Sbjct: 517 QGKIKEARKLRANMEANGMDPDSYTYTSLIHGECIADNVDEAMRLFSEM 565
Score = 47.8 bits (112), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 51/261 (19%), Positives = 111/261 (42%), Gaps = 6/261 (2%)
Query: 322 KVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKI 381
+V D M KG ++ +C+ L +R + ++++ + K +V T ++ +
Sbjct: 175 RVFDYMVKKGLSIDERSCIVFLVAAKKRRRIDLCLEIFRRMVDSGVKITVYSLTIVVEGL 234
Query: 382 VVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIA 441
+++ K+++ F G N+++ A + +LK M++ G +
Sbjct: 235 CRRGEVEKS--KKLIKEFSVKGIKPEAYTYNTIINAYVKQRDFSGVEGVLKVMKKDGVVY 292
Query: 442 SSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCF 501
+ + + GK +A + D M G + ++ SLI +C G++ +A F
Sbjct: 293 NKVTYTLLMELSVKNGKMSDAEKLFDEMRERGIESDVHVYTSLISWNCRKGNMKRAFLLF 352
Query: 502 QKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLL 561
++ EK G S + Y L++ C K + A + + N ++ + + LI
Sbjct: 353 DELTEK-GLSPSSYTYGALIDGVC-KVGEMGAAEILMNEMQSKGVNITQVVFNTLIDG-Y 409
Query: 562 VQRGFKDALSLLC-LMKDHGF 581
++G D S++ +M+ GF
Sbjct: 410 CRKGMVDEASMIYDVMEQKGF 430
Score = 40.8 bits (94), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 90/388 (23%), Positives = 159/388 (40%), Gaps = 59/388 (15%)
Query: 111 FSDVNDISKQLELSGVVF---THEMVLKV-LKNLESSPDEARRFFNWVLEKESERLSSKT 166
FS V + K ++ GVV+ T+ +++++ +KN + S +A + F+ + E+ E
Sbjct: 275 FSGVEGVLKVMKKDGVVYNKVTYTLLMELSVKNGKMS--DAEKLFDEMRERGIES-DVHV 331
Query: 167 YNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRNKMTEKFEKEGLESDLEKL----- 221
Y ++ G ++ + L D + +KG +S+ + + K G E L
Sbjct: 332 YTSLISWNCRKGNMKRAFLLFDELTEKGLSPSSYTYGALIDGVCKVGEMGAAEILMNEMQ 391
Query: 222 -KGIFATGSIDNSIEKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVK-FVVDKLGD 279
KG+ T + N++ R V + + D +E++ +V N + F K D
Sbjct: 392 SKGVNITQVVFNTLIDGYCRKGMVDEASMIYDVMEQKGFQADVFTCNTIASCFNRLKRYD 451
Query: 280 EPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETC 339
E K+ L FR E G VK SY + V +E ++ ++ EM SKG + T
Sbjct: 452 EAKQWL--FRMME--GGVKLSTVSYTNLIDVYCKEGNVEEAKRLFVEMSSKGVQPNAITY 507
Query: 340 VKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLD--MRLFSKVVR 397
++ + ++ +KEA L A P T L+ ++ +D MRLFS+
Sbjct: 508 NVMIYAYCKQGKIKEARKLRANMEANGMDPDSYTYTSLIHGECIADNVDEAMRLFSE--- 564
Query: 398 VFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAG 457
MG LK +++ + + LS AG
Sbjct: 565 --------------------------MG-----LKGLDQNSVTYTVMISG-----LSKAG 588
Query: 458 KKDEANEFMDHMEASGSDVGDKMWVSLI 485
K DEA D M+ G + +K++ +LI
Sbjct: 589 KSDEAFGLYDEMKRKGYTIDNKVYTALI 616
>sp|Q9LN22|PPR54_ARATH Pentatricopeptide repeat-containing protein At1g20300,
mitochondrial OS=Arabidopsis thaliana GN=At1g20300 PE=2
SV=1
Length = 537
Score = 62.4 bits (150), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 85/427 (19%), Positives = 169/427 (39%), Gaps = 61/427 (14%)
Query: 266 SNDLVKFVVDKLGD-----EPKKALIFFRWAEESGFVKHDES-SYNAMASVLGREDCIDR 319
S +V+ V++K G ++L FF WA H YN M + G+ D
Sbjct: 110 SPSVVRCVIEKCGSVRHGIPLHQSLAFFNWATSRDDYDHKSPHPYNEMIDLSGKVRQFDL 169
Query: 320 FWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAV-------------DLYEFAMACK 366
W ++D M+S+ E+ +ET ++ R+ + EAV D F++
Sbjct: 170 AWHLIDLMKSRNVEISIETFTILIRRYVRAGLASEAVHCFNRMEDYGCVPDKIAFSIVIS 229
Query: 367 N---------------------KPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRE---- 401
N +P V T L+R + ++ S+ +VF+E
Sbjct: 230 NLSRKRRASEAQSFFDSLKDRFEPDVIVYTNLVRGWCRAGEI-----SEAEKVFKEMKLA 284
Query: 402 --NGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKK 459
NV T ++ V+ AL G++ + + M + G ++ + + AG+
Sbjct: 285 GIEPNVYTYSI---VIDALCRCGQISRAHDVFADMLDSGCAPNAITFNNLMRVHVKAGRT 341
Query: 460 DEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDL 519
++ + + M+ G + + LI+ HC +L+ A M++K+ +A +
Sbjct: 342 EKVLQVYNQMKKLGCEPDTITYNFLIEAHCRDENLENAVKVLNTMIKKKCEVNASTFNTI 401
Query: 520 LVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDH 579
Y K R ++ +++ + E +P TY L++ + + L + M D
Sbjct: 402 F--RYIEKKRDVNGAHRMYSKMMEAKCEPNTVTYNILMRMFVGSKSTDMVLKMKKEMDDK 459
Query: 580 GFPPFVDPF---IKYVSKSGTSDDAIAFLKGMTSKR--FPSMSVVLCLFAAFFQARRHSE 634
P V+ + + G ++A K M ++ PS+S+ + A +A + +
Sbjct: 460 EVEPNVNTYRLLVTMFCGMGHWNNAYKLFKEMVEEKCLTPSLSLYEMVLAQLRRAGQLKK 519
Query: 635 AQDLLSK 641
++L+ K
Sbjct: 520 HEELVEK 526
Score = 38.9 bits (89), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 50/230 (21%), Positives = 98/230 (42%), Gaps = 13/230 (5%)
Query: 248 DIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAM 307
D++ D ++ +TF N+L++ V +K L + ++ G + D +YN +
Sbjct: 311 DVFADMLDSGCAPNAITF-NNLMRVHVK--AGRTEKVLQVYNQMKKLG-CEPDTITYNFL 366
Query: 308 ASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKN 367
R++ ++ KVL+ M K E+ T + ++ V A +Y M K
Sbjct: 367 IEAHCRDENLENAVKVLNTMIKKKCEVNASTFNTIFRYIEKKRDVNGAHRMYSKMMEAKC 426
Query: 368 KPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNS---VLKALISVGRM 424
+P+ L+R V SK DM V+++ +E + + +N+ ++ +G
Sbjct: 427 EPNTVTYNILMRMFVGSKSTDM-----VLKMKKEMDDKEVEPNVNTYRLLVTMFCGMGHW 481
Query: 425 GECNKILKAM-EEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASG 473
K+ K M EE S ++ + +L AG+ + E ++ M G
Sbjct: 482 NNAYKLFKEMVEEKCLTPSLSLYEMVLAQLRRAGQLKKHEELVEKMIQKG 531
Score = 33.5 bits (75), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 36/72 (50%), Gaps = 7/72 (9%)
Query: 150 FFNWVLEKES-ERLSSKTYNLMLRIVGVHGLVQEF---WGLVDVMKKKGYGVASHVRNKM 205
FFNW ++ + S YN M + + G V++F W L+D+MK + ++ +
Sbjct: 136 FFNWATSRDDYDHKSPHPYNEM---IDLSGKVRQFDLAWHLIDLMKSRNVEISIETFTIL 192
Query: 206 TEKFEKEGLESD 217
++ + GL S+
Sbjct: 193 IRRYVRAGLASE 204
>sp|Q8S9D1|PP395_ARATH Pentatricopeptide repeat-containing protein At5g21222
OS=Arabidopsis thaliana GN=ATC401 PE=2 SV=1
Length = 831
Score = 62.4 bits (150), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 87/382 (22%), Positives = 158/382 (41%), Gaps = 26/382 (6%)
Query: 144 PDEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRN 203
P EA FN ++E E + S TY ++ + L+ ++K G + + N
Sbjct: 335 PQEAHSIFNTLIE-EGHKPSLITYTTLVTALTRQKHFHSLLSLISKVEKNGLKPDTILFN 393
Query: 204 KMTEKFEKEG-LESDL---EKLK--GIFATGSIDNSIEKVASRICKVVRSDIWGDDVER- 256
+ + G L+ + EK+K G T S N++ K +I K+ S D + R
Sbjct: 394 AIINASSESGNLDQAMKIFEKMKESGCKPTASTFNTLIKGYGKIGKLEESSRLLDMMLRD 453
Query: 257 QLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGR--- 313
++ N N LV+ ++ E +++ +S VK D ++N +A R
Sbjct: 454 EMLQPNDRTCNILVQAWCNQRKIEEAWNIVY---KMQSYGVKPDVVTFNTLAKAYARIGS 510
Query: 314 ----EDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKP 369
ED I + M + + TC ++ + E ++EA+ + P
Sbjct: 511 TCTAEDMI------IPRMLHNKVKPNVRTCGTIVNGYCEEGKMEEALRFFYRMKELGVHP 564
Query: 370 SVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNK 429
++ L++ + DM +VV + E G ++++ A SVG M C +
Sbjct: 565 NLFVFNSLIKGFLNIN--DMDGVGEVVDLMEEFGVKPDVVTFSTLMNAWSSVGDMKRCEE 622
Query: 430 ILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHC 489
I M EGG + S +A + AG+ ++A + ++ M G ++ +I G C
Sbjct: 623 IYTDMLEGGIDPDIHAFSILAKGYARAGEPEKAEQILNQMRKFGVRPNVVIYTQIISGWC 682
Query: 490 VAGDLDKAADCFQKMVEKEGTS 511
AG++ KA ++KM G S
Sbjct: 683 SAGEMKKAMQVYKKMCGIVGLS 704
Score = 42.4 bits (98), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 29/129 (22%), Positives = 61/129 (47%), Gaps = 1/129 (0%)
Query: 430 ILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHC 489
++ +E+ G + + + I S +G D+A + + M+ SG + +LIKG+
Sbjct: 376 LISKVEKNGLKPDTILFNAIINASSESGNLDQAMKIFEKMKESGCKPTASTFNTLIKGYG 435
Query: 490 VAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPW 549
G L++++ M+ E ++LV +C++ + +A V+ ++ Y +KP
Sbjct: 436 KIGKLEESSRLLDMMLRDEMLQPNDRTCNILVQAWCNQRKIEEAWNIVYK-MQSYGVKPD 494
Query: 550 HTTYEELIK 558
T+ L K
Sbjct: 495 VVTFNTLAK 503
>sp|Q0WPZ6|PP158_ARATH Pentatricopeptide repeat-containing protein At2g17140
OS=Arabidopsis thaliana GN=At2g17140 PE=2 SV=1
Length = 874
Score = 62.0 bits (149), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 126/574 (21%), Positives = 230/574 (40%), Gaps = 77/574 (13%)
Query: 119 KQLELSGV---VFTHEMVLKVLKNLESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVG 175
K + L G+ +T ++++ L + S D AR F+ + EK + + T+ +++R
Sbjct: 136 KDMVLCGIAPQTYTFNLLIRALCD-SSCVDAARELFDEMPEKGC-KPNEFTFGILVRGYC 193
Query: 176 VHGLVQEFWGLVDVMKKKGYGVASHVRNKMTEKFEKEGLESDLEKLKGIFATGSIDNSIE 235
GL + L++ M+ G + N + F +EG D EK+ + I
Sbjct: 194 KAGLTDKGLELLNAMESFGVLPNKVIYNTIVSSFCREGRNDDSEKMVEKMREEGLVPDIV 253
Query: 236 KVASRICKVVR-----------SDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKA 284
SRI + + SD+ D+ R ++T++ L F L ++ K
Sbjct: 254 TFNSRISALCKEGKVLDASRIFSDMELDEYLGLPRPNSITYNLMLKGFCKVGLLEDAKTL 313
Query: 285 LIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKG-------YEMEME 337
R ++ ++ SYN L R VL +M KG Y + M+
Sbjct: 314 FESIRENDDLASLQ----SYNIWLQGLVRHGKFIEAETVLKQMTDKGIGPSIYSYNILMD 369
Query: 338 TCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDM--RLFSKV 395
K LG S+ K V L + C + + C LL ++D L ++
Sbjct: 370 GLCK-LGMLSD---AKTIVGLMKRNGVCPDAVTYGC---LLHGYCSVGKVDAAKSLLQEM 422
Query: 396 VRVFRENGNVLTDA-MLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLS 454
+R N L +A N +L +L +GR+ E ++L+ M E G+ + + I L
Sbjct: 423 MR-----NNCLPNAYTCNILLHSLWKMGRISEAEELLRKMNEKGYGLDTVTCNIIVDGLC 477
Query: 455 SAGKKDEANEFMDHMEASGS----DVGDK-------------------MWVSLIKGHCVA 491
+G+ D+A E + M GS ++G+ + +L+ G C A
Sbjct: 478 GSGELDKAIEIVKGMRVHGSAALGNLGNSYIGLVDDSLIENNCLPDLITYSTLLNGLCKA 537
Query: 492 GDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHT 551
G +A + F +M+ E A ++ ++ +C + + A + +++ + K H
Sbjct: 538 GRFAEAKNLFAEMM-GEKLQPDSVAYNIFIHHFCKQGKISSAFRV----LKDMEKKGCHK 592
Query: 552 ---TYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPF---IKYVSKSGTSDDAIAFL 605
TY LI L ++ + L+ MK+ G P + + I+Y+ + +DA L
Sbjct: 593 SLETYNSLILGLGIKNQIFEIHGLMDEMKEKGISPNICTYNTAIQYLCEGEKVEDATNLL 652
Query: 606 KGMTSKRF-PSMSVVLCLFAAFFQARRHSEAQDL 638
M K P++ L AF + AQ++
Sbjct: 653 DEMMQKNIAPNVFSFKYLIEAFCKVPDFDMAQEV 686
Score = 43.9 bits (102), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 77/360 (21%), Positives = 146/360 (40%), Gaps = 26/360 (7%)
Query: 291 AEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERN 350
A ES V ++ YN + S RE D K++++MR +G ++ T + +
Sbjct: 207 AMESFGVLPNKVIYNTIVSSFCREGRNDDSEKMVEKMREEGLVPDIVTFNSRISALCKEG 266
Query: 351 MVKEA------VDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGN 404
V +A ++L E+ P N T+ L K + + REN +
Sbjct: 267 KVLDASRIFSDMELDEYL----GLPRPNSITYNLMLKGFCKVGLLEDAKTLFESIRENDD 322
Query: 405 VLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANE 464
+ + N L+ L+ G+ E +LK M + G S + + L G +A
Sbjct: 323 LASLQSYNIWLQGLVRHGKFIEAETVLKQMTDKGIGPSIYSYNILMDGLCKLGMLSDAKT 382
Query: 465 FMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTY 524
+ M+ +G + L+ G+C G +D A Q+M+ +A Y ++L+++
Sbjct: 383 IVGLMKRNGVCPDAVTYGCLLHGYCSVGKVDAAKSLLQEMMRNNCLPNA-YTCNILLHSL 441
Query: 525 CSKNRAIDACKFVHNCVREYDLKPW--HTTYEELIKNLLVQRGFKD-ALSLLCLMKDHGF 581
R +A +R+ + K + T +I + L G D A+ ++ M+ HG
Sbjct: 442 WKMGRISEA----EELLRKMNEKGYGLDTVTCNIIVDGLCGSGELDKAIEIVKGMRVHGS 497
Query: 582 PPFVDPFIKYVSKSGTSDDAIAFLKGMTSKRFPSMSVVLCLFAAFFQARRHSEAQDLLSK 641
+ Y+ G DD++ + + P + L +A R +EA++L ++
Sbjct: 498 AALGNLGNSYI---GLVDDSL-----IENNCLPDLITYSTLLNGLCKAGRFAEAKNLFAE 549
Score = 39.7 bits (91), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 75/385 (19%), Positives = 156/385 (40%), Gaps = 41/385 (10%)
Query: 166 TYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRNKMTEKFEKEG-LESDLEKLKGI 224
T N++L + G + E L+ M +KGYG+ + N + + G L+ +E +KG+
Sbjct: 433 TCNILLHSLWKMGRISEAEELLRKMNEKGYGLDTVTCNIIVDGLCGSGELDKAIEIVKGM 492
Query: 225 FATGS-------------IDNSI------------EKVASRICKVVR----SDIWGDDVE 255
GS +D+S+ + + +CK R +++ + +
Sbjct: 493 RVHGSAALGNLGNSYIGLVDDSLIENNCLPDLITYSTLLNGLCKAGRFAEAKNLFAEMMG 552
Query: 256 RQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGRED 315
+L+ +V ++ + F K G + A + E+ G K E+ YN++ LG ++
Sbjct: 553 EKLQPDSVAYNIFIHHFC--KQG-KISSAFRVLKDMEKKGCHKSLET-YNSLILGLGIKN 608
Query: 316 CIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCT 375
I ++DEM+ KG + T + E V++A +L + M P+V
Sbjct: 609 QIFEIHGLMDEMKEKGISPNICTYNTAIQYLCEGEKVEDATNLLDEMMQKNIAPNVFSFK 668
Query: 376 FLLRKIVVSKQLDM--RLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKA 433
+L+ DM +F V + + + + + + L++ G++ + ++L+A
Sbjct: 669 YLIEAFCKVPDFDMAQEVFETAVSICGQK-----EGLYSLMFNELLAAGQLLKATELLEA 723
Query: 434 MEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGD 493
+ + GF + + + L + + A+ + M G + +I G G+
Sbjct: 724 VLDRGFELGTFLYKDLVESLCKKDELEVASGILHKMIDRGYGFDPAALMPVIDGLGKMGN 783
Query: 494 LDKAADCFQKMVEKEGTSHAGYAID 518
+A KM+E +D
Sbjct: 784 KKEANSFADKMMEMASVGEVANKVD 808
>sp|Q8GYP6|PPR49_ARATH Pentatricopeptide repeat-containing protein At1g18900
OS=Arabidopsis thaliana GN=At1g18900 PE=1 SV=1
Length = 860
Score = 60.8 bits (146), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 103/468 (22%), Positives = 180/468 (38%), Gaps = 39/468 (8%)
Query: 206 TEKFEKEGL-ESDLEKLKGIFATGSIDNSI---EKVASRICKVVRSDIWGDDVERQLRDL 261
+ +F G S +E +KG T + + V+R WG E L++L
Sbjct: 266 SNRFVPSGFSNSSVEMMKGPSGTALTSRQYCNSGHIVENVSSVLRRFRWGPAAEEALQNL 325
Query: 262 NVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFW 321
+ V+ ++ D AL FF W + KHD +Y M LGR
Sbjct: 326 GLRIDAYQANQVLKQMNDY-GNALGFFYWLKRQPGFKHDGHTYTTMVGNLGRAKQFGAIN 384
Query: 322 KVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPS-VNCCTFL-LR 379
K+LDEM G + T +++ + N + EA++++ KP V CT + +
Sbjct: 385 KLLDEMVRDGCQPNTVTYNRLIHSYGRANYLNEAMNVFNQMQEAGCKPDRVTYCTLIDIH 444
Query: 380 KIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSV-LKALISVGRMGECNKILKAMEEGG 438
+ M ++ ++ + G + D SV + L G + +K+ M + G
Sbjct: 445 AKAGFLDIAMDMYQRM-----QAGGLSPDTFTYSVIINCLGKAGHLPAAHKLFCEMVDQG 499
Query: 439 FIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIK---GHCVAGDLD 495
+ + + + A A + M+ +G + DK+ S++ GHC G L+
Sbjct: 500 CTPNLVTYNIMMDLHAKARNYQNALKLYRDMQNAGFEP-DKVTYSIVMEVLGHC--GYLE 556
Query: 496 KAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEE 555
+A F +M +K LLV+ + A ++ + + L+P T
Sbjct: 557 EAEAVFTEMQQKNWIPDEP-VYGLLVDLWGKAGNVEKAWQW-YQAMLHAGLRPNVPTCNS 614
Query: 556 LIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPFIKYVS--KSGTSDDAIAFL-KGMTSKR 612
L+ L +A LL M G P + + +S G S + F + M S
Sbjct: 615 LLSTFLRVNKIAEAYELLQNMLALGLRPSLQTYTLLLSCCTDGRSKLDMGFCGQLMASTG 674
Query: 613 FPSMSVVLCLFAAFFQARRHSEAQDLLSKCPRYVRNHA-DVLNLLYSK 659
P+ +L + AA VRNHA + L+L++S+
Sbjct: 675 HPAHMFLLKMPAAGPDGEN--------------VRNHANNFLDLMHSE 708
>sp|Q76C99|RF1_ORYSI Protein Rf1, mitochondrial OS=Oryza sativa subsp. indica GN=Rf1
PE=2 SV=1
Length = 791
Score = 59.7 bits (143), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 77/376 (20%), Positives = 150/376 (39%), Gaps = 39/376 (10%)
Query: 300 DESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLY 359
D +YN++ + L + +D+ +VL+ M G + T +L + KEA+
Sbjct: 230 DVVTYNSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGFL 289
Query: 360 EFAMACKNKPSVNCCTFLL------------RKIVVSK-----QLDMRLFSKVVRVFREN 402
+ + +P V + L+ RKI S + ++ + +++ +
Sbjct: 290 KKMRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKRGLKPEITTYGTLLQGYATK 349
Query: 403 GNV-----LTDAMLNS-------VLKALISV----GRMGECNKILKAMEEGGFIASSNMK 446
G + L D M+ + V LI G++ + + M + G ++
Sbjct: 350 GALVEMHGLLDLMVRNGIHPDHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPNAVTY 409
Query: 447 SKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVE 506
+ L +G+ ++A + + M G G+ ++ SLI G C ++A + +M++
Sbjct: 410 GAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLD 469
Query: 507 KEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGF 566
+ G + +++++C + R I++ K VR +KP TY LI +
Sbjct: 470 R-GICLNTIFFNSIIDSHCKEGRVIESEKLFELMVR-IGVKPNVITYNTLINGYCLAGKM 527
Query: 567 KDALSLLCLMKDHGFPPFV---DPFIKYVSKSGTSDDAIAFLKGMTSKRF-PSMSVVLCL 622
+A+ LL M G P I K +DA+ K M S P + +
Sbjct: 528 DEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDALVLFKEMESSGVSPDIITYNII 587
Query: 623 FAAFFQARRHSEAQDL 638
FQ RR + A++L
Sbjct: 588 LQGLFQTRRTAAAKEL 603
Score = 48.1 bits (113), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 79/350 (22%), Positives = 134/350 (38%), Gaps = 16/350 (4%)
Query: 242 CKVVRSDI----WGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFV 297
C+ R D+ G+ +++ R + F+ L DK + I R E G +
Sbjct: 98 CRAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMD--IVLRRMTELGCI 155
Query: 298 KHDESSYNAMASVLGREDCIDRFWKVLDEM---RSKGYEMEMETCVKVLGRFSERNMVKE 354
+ SYN + L E+ ++L M R G ++ + V+ F + +
Sbjct: 156 P-NVFSYNILLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYTTVINGFFKEGDSDK 214
Query: 355 AVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAML-NS 413
A Y + P V ++ + ++ +D + +V+ +NG V+ D M NS
Sbjct: 215 AYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAM--EVLNTMVKNG-VMPDCMTYNS 271
Query: 414 VLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASG 473
+L S G+ E LK M G S + L G+ EA + D M G
Sbjct: 272 ILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKRG 331
Query: 474 SDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDA 533
+ +L++G+ G L + MV + G Y +L+ Y +K +D
Sbjct: 332 LKPEITTYGTLLQGYATKGALVEMHGLLDLMV-RNGIHPDHYVFSILICAY-AKQGKVDQ 389
Query: 534 CKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPP 583
V + +R+ L P TY +I L +DA+ M D G P
Sbjct: 390 AMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSP 439
Score = 47.0 bits (110), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 78/397 (19%), Positives = 151/397 (38%), Gaps = 42/397 (10%)
Query: 280 EPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETC 339
+PK+A+ F + G V+ D +Y+ + L + K+ D M +G + E+ T
Sbjct: 281 QPKEAIGFLKKMRSDG-VEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKRGLKPEITTY 339
Query: 340 VKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLD--MRLFSK--- 394
+L ++ + + E L + + P + L+ ++D M +FSK
Sbjct: 340 GTLLQGYATKGALVEMHGLLDLMVRNGIHPDHYVFSILICAYAKQGKVDQAMLVFSKMRQ 399
Query: 395 ------------VVRVFRENGNVLTDAML-----------------NSVLKALISVGRMG 425
V+ + ++G V DAML NS++ L + +
Sbjct: 400 QGLNPNAVTYGAVIGILCKSGRV-EDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWE 458
Query: 426 ECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLI 485
+++ M + G ++ + I G+ E+ + + M G + +LI
Sbjct: 459 RAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFELMVRIGVKPNVITYNTLI 518
Query: 486 KGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYD 545
G+C+AG +D+A MV G L+N YC +R DA +
Sbjct: 519 NGYCLAGKMDEAMKLLSGMVSV-GLKPNTVTYSTLINGYCKISRMEDALVLFKE-MESSG 576
Query: 546 LKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPF---IKYVSKSGTSDDAI 602
+ P TY +++ L R A L + + G + + + + K+ +DDA+
Sbjct: 577 VSPDIITYNIILQGLFQTRRTAAAKELYVRITESGTQIELSTYNIILHGLCKNKLTDDAL 636
Query: 603 AFLKGMTSKRFPSMSVVL-CLFAAFFQARRHSEAQDL 638
+ + + + A + R+ EA+DL
Sbjct: 637 QMFQNLCLMDLKLEARTFNIMIDALLKVGRNDEAKDL 673
>sp|Q9FVX2|PP129_ARATH Pentatricopeptide repeat-containing protein At1g77360,
mitochondrial OS=Arabidopsis thaliana GN=At1g77360 PE=2
SV=2
Length = 517
Score = 59.7 bits (143), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 104/494 (21%), Positives = 182/494 (36%), Gaps = 82/494 (16%)
Query: 104 VSDIFYKFSDVNDISKQLEL------SGVVFTHEMVLKVLKNLESSPDEARRFFNWVLEK 157
V+D+ S V S QL L SG+ + E+V VL ++ RFF W ++
Sbjct: 68 VADVAKNISKVLMSSPQLVLDSALDQSGLRVSQEVVEDVLNRFRNAGLLTYRFFQWSEKQ 127
Query: 158 ESERLSSKTYNLMLRIVGVHGLVQEFWGLVDVMKKKG-------------YGVASHVRNK 204
S + Y++M+ + W L++ M+KK Y A V
Sbjct: 128 RHYEHSVRAYHMMIESTAKIRQYKLMWDLINAMRKKKMLNVETFCIVMRKYARAQKVDEA 187
Query: 205 MT--EKFEKEGLESDLEKLKGIFATGSIDNSIEKVASRICKVVRSDIWGDDVERQLRDLN 262
+ EK L +L G+ + ++ K +V +RD
Sbjct: 188 IYAFNVMEKYDLPPNLVAFNGLLSALCKSKNVRK--------------AQEVFENMRD-R 232
Query: 263 VTFSNDLVKFVVDKLGDEPK--KALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRF 320
T + +++ G EP KA FR ++G D +Y+ M +L + +D
Sbjct: 233 FTPDSKTYSILLEGWGKEPNLPKAREVFREMIDAG-CHPDIVTYSIMVDILCKAGRVDEA 291
Query: 321 WKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRK 380
++ M + ++ + N ++EAVD +
Sbjct: 292 LGIVRSMDPSICKPTTFIYSVLVHTYGTENRLEEAVDTF--------------------- 330
Query: 381 IVVSKQLDMRLFSKVVRVFRENGNVLTD-AMLNSVLKALISVGRMGECNKILKAMEEGGF 439
L+M E + D A+ NS++ A RM ++LK M+ G
Sbjct: 331 ------LEM-----------ERSGMKADVAVFNSLIGAFCKANRMKNVYRVLKEMKSKGV 373
Query: 440 IASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAAD 499
+S + I L G+KDEA + M D + +IK C +++ AD
Sbjct: 374 TPNSKSCNIILRHLIERGEKDEAFDVFRKMIKVCEPDADT-YTMVIKMFCEKKEME-TAD 431
Query: 500 CFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKN 559
K + K+G + + +L+N C + AC + + E ++P T+ L +
Sbjct: 432 KVWKYMRKKGVFPSMHTFSVLINGLCEERTTQKACVLLEEMI-EMGIRPSGVTFGRL-RQ 489
Query: 560 LLVQRGFKDALSLL 573
LL++ +D L L
Sbjct: 490 LLIKEEREDVLKFL 503
>sp|O64624|PP163_ARATH Pentatricopeptide repeat-containing protein At2g18940
OS=Arabidopsis thaliana GN=At2g18940 PE=2 SV=1
Length = 822
Score = 59.3 bits (142), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 63/315 (20%), Positives = 127/315 (40%), Gaps = 26/315 (8%)
Query: 282 KKALIFFRW---AEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMET 338
++A+ F W + SG +K D +LGRE K+LD++ + Y +++
Sbjct: 153 ERAVFLFEWLVLSSNSGALKLDHQVIEIFVRILGRESQYSVAAKLLDKIPLQEYLLDVRA 212
Query: 339 CVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRV 398
+L +S ++A+DL+E P+ +V+ + + +F K+ R
Sbjct: 213 YTTILHAYSRTGKYEKAIDLFERMKEMGPSPT-----------LVTYNVILDVFGKMGRS 261
Query: 399 FRENGNVLTDA----------MLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSK 448
+R+ VL + ++VL A G + E + ++ G+ + +
Sbjct: 262 WRKILGVLDEMRSKGLKFDEFTCSTVLSACAREGLLREAKEFFAELKSCGYEPGTVTYNA 321
Query: 449 IAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKE 508
+ AG EA + ME + + L+ + AG +AA + M+ K+
Sbjct: 322 LLQVFGKAGVYTEALSVLKEMEENSCPADSVTYNELVAAYVRAGFSKEAAGVIE-MMTKK 380
Query: 509 GTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKD 568
G +++ Y + +A K ++ ++E P TY ++ L + +
Sbjct: 381 GVMPNAITYTTVIDAYGKAGKEDEALKLFYS-MKEAGCVPNTCTYNAVLSLLGKKSRSNE 439
Query: 569 ALSLLCLMKDHGFPP 583
+ +LC MK +G P
Sbjct: 440 MIKMLCDMKSNGCSP 454
Score = 57.8 bits (138), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 70/321 (21%), Positives = 132/321 (41%), Gaps = 48/321 (14%)
Query: 303 SYNAMASVLGREDCIDRFWK----VLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDL 358
+YN + V G+ + R W+ VLDEMRSKG + + TC VL + +++EA +
Sbjct: 247 TYNVILDVFGK---MGRSWRKILGVLDEMRSKGLKFDEFTCSTVLSACAREGLLREAKEF 303
Query: 359 YEFAMACKNKPSVNCCTFLLR----------KIVVSKQL-------DMRLFSKVVRVFRE 401
+ +C +P LL+ + V K++ D ++++V +
Sbjct: 304 FAELKSCGYEPGTVTYNALLQVFGKAGVYTEALSVLKEMEENSCPADSVTYNELVAAYVR 363
Query: 402 NG---------------NVLTDAML-NSVLKALISVGRMGECNKILKAMEEGGFIASSNM 445
G V+ +A+ +V+ A G+ E K+ +M+E G + ++
Sbjct: 364 AGFSKEAAGVIEMMTKKGVMPNAITYTTVIDAYGKAGKEDEALKLFYSMKEAGCVPNTCT 423
Query: 446 KSKIAFRLSSAGKKDEANEFMD---HMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQ 502
+ + LS GKK +NE + M+++G W +++ C +DK +
Sbjct: 424 YNAV---LSLLGKKSRSNEMIKMLCDMKSNGCSPNRATWNTML-ALCGNKGMDKFVNRVF 479
Query: 503 KMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLV 562
+ ++ G + L++ Y +DA K R TTY L+ L
Sbjct: 480 REMKSCGFEPDRDTFNTLISAYGRCGSEVDASKMYGEMTRA-GFNACVTTYNALLNALAR 538
Query: 563 QRGFKDALSLLCLMKDHGFPP 583
+ ++ +++ MK GF P
Sbjct: 539 KGDWRSGENVISDMKSKGFKP 559
Score = 41.2 bits (95), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 116/527 (22%), Positives = 213/527 (40%), Gaps = 45/527 (8%)
Query: 108 FYKFSDVNDISKQLELSGVVFTHEMVLKVLKNLESSPDEARRFFNWVLEKESERLSSK-- 165
+ K D+ + K++ S + T+ ++L V + S R+ + E S+ L
Sbjct: 226 YEKAIDLFERMKEMGPSPTLVTYNVILDVFGKMGRS---WRKILGVLDEMRSKGLKFDEF 282
Query: 166 TYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRNKMTEKFEKEGLESD-LEKLKGI 224
T + +L GL++E +K GY + N + + F K G+ ++ L LK +
Sbjct: 283 TCSTVLSACAREGLLREAKEFFAELKSCGYEPGTVTYNALLQVFGKAGVYTEALSVLKEM 342
Query: 225 FATGSIDNSI---EKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEP 281
+S+ E VA+ + + G V + V + V+D G
Sbjct: 343 EENSCPADSVTYNELVAAYVRAGFSKEAAG--VIEMMTKKGVMPNAITYTTVIDAYGKAG 400
Query: 282 KK--ALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETC 339
K+ AL F +E+G V + +YNA+ S+LG++ + K+L +M+S G T
Sbjct: 401 KEDEALKLFYSMKEAGCVP-NTCTYNAVLSLLGKKSRSNEMIKMLCDMKSNGCSPNRATW 459
Query: 340 VKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKI-VVSKQLDM-RLFSKVVR 397
+L + M K ++ +C +P + L+ ++D +++ ++ R
Sbjct: 460 NTMLALCGNKGMDKFVNRVFREMKSCGFEPDRDTFNTLISAYGRCGSEVDASKMYGEMTR 519
Query: 398 VFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAG 457
N V T N++L AL G ++ M+ GF + S + + + G
Sbjct: 520 A-GFNACVTT---YNALLNALARKGDWRSGENVISDMKSKGFKPTETSYS-LMLQCYAKG 574
Query: 458 KKDEANEFMDHMEASGSDVGDKMWVSLI-----KGHCVAGDLDKAADCFQKMVEKEGTSH 512
E +++ G M + + K +AG ++A F+K
Sbjct: 575 GNYLGIERIENRIKEGQIFPSWMLLRTLLLANFKCRALAGS-ERAFTLFKK--------- 624
Query: 513 AGYAIDLLV-NTYCS---KNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRG--F 566
GY D+++ N+ S +N D + + +RE L P TY L+ ++ V+RG +
Sbjct: 625 HGYKPDMVIFNSMLSIFTRNNMYDQAEGILESIREDGLSPDLVTYNSLM-DMYVRRGECW 683
Query: 567 KDALSLLCLMKDHGFPPFV--DPFIKYVSKSGTSDDAIAFLKGMTSK 611
K L L K P V + IK + G +A+ L MT +
Sbjct: 684 KAEEILKTLEKSQLKPDLVSYNTVIKGFCRRGLMQEAVRMLSEMTER 730
>sp|Q9ZQF1|PP152_ARATH Pentatricopeptide repeat-containing protein At2g15630,
mitochondrial OS=Arabidopsis thaliana GN=At2g15630 PE=3
SV=1
Length = 627
Score = 59.3 bits (142), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 92/428 (21%), Positives = 167/428 (39%), Gaps = 40/428 (9%)
Query: 218 LEKLKGIFATGSIDNSIEKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKL 277
L K KG + N I + SR+ ++ + ++ D+ R NV N ++ + +
Sbjct: 180 LMKEKGFYPKTETCNHILTLLSRLNRIENAWVFYADMYRMEIKSNVYTFNIMINVLCKE- 238
Query: 278 GDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEME 337
+ KKA F E G +K +YN + I+ ++ EM+SKG++ +M+
Sbjct: 239 -GKLKKAKGFLGIMEVFG-IKPTIVTYNTLVQGFSLRGRIEGARLIISEMKSKGFQPDMQ 296
Query: 338 TCVKVL------GRFSE--RNM-----VKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVS 384
T +L GR SE R M V ++V C N + F R +V
Sbjct: 297 TYNPILSWMCNEGRASEVLREMKEIGLVPDSVSYNILIRGCSNNGDLEM-AFAYRDEMVK 355
Query: 385 KQLDMRLFSK------------------VVRVFRENGNVLTDAMLNSVLKALISVGRMGE 426
+ + ++ ++R RE G VL N ++ G +
Sbjct: 356 QGMVPTFYTYNTLIHGLFMENKIEAAEILIREIREKGIVLDSVTYNILINGYCQHGDAKK 415
Query: 427 CNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIK 486
+ M G + + + + L K EA+E + + G M +L+
Sbjct: 416 AFALHDEMMTDGIQPTQFTYTSLIYVLCRKNKTREADELFEKVVGKGMKPDLVMMNTLMD 475
Query: 487 GHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDL 546
GHC G++D+A ++M + + + L+ C + + +A + + R +
Sbjct: 476 GHCAIGNMDRAFSLLKEM-DMMSINPDDVTYNCLMRGLCGEGKFEEARELMGEMKRR-GI 533
Query: 547 KPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFV---DPFIKYVSKSGTSDDAIA 603
KP H +Y LI + K A + M GF P + + +K +SK+ + A
Sbjct: 534 KPDHISYNTLISGYSKKGDTKHAFMVRDEMLSLGFNPTLLTYNALLKGLSKNQEGELAEE 593
Query: 604 FLKGMTSK 611
L+ M S+
Sbjct: 594 LLREMKSE 601
Score = 43.1 bits (100), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 76/385 (19%), Positives = 148/385 (38%), Gaps = 53/385 (13%)
Query: 120 QLELSGVVFTHEMVLKVLKNLESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGL 179
++E+ V+T +++ VL E +A+ F ++E + + TYN +++ + G
Sbjct: 218 RMEIKSNVYTFNIMINVLCK-EGKLKKAKGFLG-IMEVFGIKPTIVTYNTLVQGFSLRGR 275
Query: 180 VQEFWGLVDVMKKKGYGVASHVRNKMTEKFEKEGLESDLEKLKGIFATGSIDNSIE-KVA 238
++ ++ MK KG+ N + EG S E L+ + G + +S+ +
Sbjct: 276 IEGARLIISEMKSKGFQPDMQTYNPILSWMCNEGRAS--EVLREMKEIGLVPDSVSYNIL 333
Query: 239 SRICK----VVRSDIWGDDVERQLRDLNVTFSNDLVK--FVVDKLGDEPKKALIFFRWAE 292
R C + + + D++ +Q N L+ F+ +K+ + A I R
Sbjct: 334 IRGCSNNGDLEMAFAYRDEMVKQGMVPTFYTYNTLIHGLFMENKI----EAAEILIREIR 389
Query: 293 ESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMV 352
E G V D +YN + + + + + + DEM + G + T ++ +N
Sbjct: 390 EKGIVL-DSVTYNILINGYCQHGDAKKAFALHDEMMTDGIQPTQFTYTSLIYVLCRKNKT 448
Query: 353 KEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLN 412
+EA +L+E + KP + M+N
Sbjct: 449 READELFEKVVGKGMKPDL-------------------------------------VMMN 471
Query: 413 SVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEAS 472
+++ ++G M +LK M+ + + L GK +EA E M M+
Sbjct: 472 TLMDGHCAIGNMDRAFSLLKEMDMMSINPDDVTYNCLMRGLCGEGKFEEARELMGEMKRR 531
Query: 473 GSDVGDKMWVSLIKGHCVAGDLDKA 497
G + +LI G+ GD A
Sbjct: 532 GIKPDHISYNTLISGYSKKGDTKHA 556
>sp|Q9SUD8|PP340_ARATH Pentatricopeptide repeat-containing protein At4g28010
OS=Arabidopsis thaliana GN=At4g28010 PE=2 SV=1
Length = 704
Score = 58.9 bits (141), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 75/160 (46%), Gaps = 5/160 (3%)
Query: 456 AGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGY 515
AGK DEA F+ M+ G + ++ SLI+G C G+LD+ F +++E+ G S
Sbjct: 225 AGKMDEAMGFLKEMKFMGLEADLVVYTSLIRGFCDCGELDRGKALFDEVLER-GDSPCAI 283
Query: 516 AIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCL 575
+ L+ +C + +A + + E ++P TY LI L K+AL LL L
Sbjct: 284 TYNTLIRGFCKLGQLKEASEIFEFMI-ERGVRPNVYTYTGLIDGLCGVGKTKEALQLLNL 342
Query: 576 MKDHGFPPFVDPF---IKYVSKSGTSDDAIAFLKGMTSKR 612
M + P + I + K G DA+ ++ M +R
Sbjct: 343 MIEKDEEPNAVTYNIIINKLCKDGLVADAVEIVELMKKRR 382
Score = 40.4 bits (93), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 76/345 (22%), Positives = 144/345 (41%), Gaps = 26/345 (7%)
Query: 315 DC--IDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVN 372
DC +DR + DE+ +G T ++ F + +KEA +++EF + +P+V
Sbjct: 259 DCGELDRGKALFDEVLERGDSPCAITYNTLIRGFCKLGQLKEASEIFEFMIERGVRPNVY 318
Query: 373 CCTFLLRKI--VVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKI 430
T L+ + V + ++L + ++ E V + ++N + K G + + +I
Sbjct: 319 TYTGLIDGLCGVGKTKEALQLLNLMIEKDEEPNAVTYNIIINKLCKD----GLVADAVEI 374
Query: 431 LKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHM--EASGSDVGDKMWVSLIKGH 488
++ M++ + + + L + G DEA++ + M ++S +D + +LI G
Sbjct: 375 VELMKKRRTRPDNITYNILLGGLCAKGDLDEASKLLYLMLKDSSYTDPDVISYNALIHGL 434
Query: 489 CVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSK---NRAIDACKFVHN--CVRE 543
C L +A D + +VEK G ++L+N+ N+A++ K + + VR
Sbjct: 435 CKENRLHQALDIYDLLVEKLGAGDR-VTTNILLNSTLKAGDVNKAMELWKQISDSKIVRN 493
Query: 544 YDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFV---DPFIKYVSKSGTSDD 600
D TY +I A LLC M+ P V + + + K G+ D
Sbjct: 494 SD------TYTAMIDGFCKTGMLNVAKGLLCKMRVSELQPSVFDYNCLLSSLCKEGSLDQ 547
Query: 601 AIAFLKGMT-SKRFPSMSVVLCLFAAFFQARRHSEAQDLLSKCPR 644
A + M FP + + +A A+ LL R
Sbjct: 548 AWRLFEEMQRDNNFPDVVSFNIMIDGSLKAGDIKSAESLLVGMSR 592
Score = 39.7 bits (91), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 84/370 (22%), Positives = 155/370 (41%), Gaps = 47/370 (12%)
Query: 146 EARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRNKM 205
EA + N ++EK+ E ++ TYN+++ + GLV + +V++MKK+ + N +
Sbjct: 335 EALQLLNLMIEKDEEP-NAVTYNIIINKLCKDGLVADAVEIVELMKKRRTRPDNITYNIL 393
Query: 206 TEKFEKEGLESDLEKLKGIFATGSIDNSIEKVASRICKVVRSDIWGDDVERQLRDLNVTF 265
L G+ A G +D AS++ ++ D D +V
Sbjct: 394 ---------------LGGLCAKGDLDE-----ASKLLYLMLKD-------SSYTDPDVIS 426
Query: 266 SNDLVKFVVDKLGDEPKKAL-IFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVL 324
N L+ + + + +AL I+ E+ G D + N + + + +++ ++
Sbjct: 427 YNALIHGLCKE--NRLHQALDIYDLLVEKLG--AGDRVTTNILLNSTLKAGDVNKAMELW 482
Query: 325 DEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSV---NCCTFLLRKI 381
++ +T ++ F + M+ A L + +PSV NC LL +
Sbjct: 483 KQISDSKIVRNSDTYTAMIDGFCKTGMLNVAKGLLCKMRVSELQPSVFDYNC---LLSSL 539
Query: 382 VVSKQLDM--RLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGF 439
LD RLF ++ R V + M++ LKA G + +L M G
Sbjct: 540 CKEGSLDQAWRLFEEMQRDNNFPDVVSFNIMIDGSLKA----GDIKSAESLLVGMSRAGL 595
Query: 440 IASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVA-GDLDKAA 498
SK+ R G DEA F D M SG + + S++K +C++ G+ DK
Sbjct: 596 SPDLFTYSKLINRFLKLGYLDEAISFFDKMVDSGFEPDAHICDSVLK-YCISQGETDKLT 654
Query: 499 DCFQKMVEKE 508
+ +K+V+K+
Sbjct: 655 ELVKKLVDKD 664
Score = 37.7 bits (86), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 46/210 (21%), Positives = 86/210 (40%), Gaps = 9/210 (4%)
Query: 405 VLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANE 464
V T+ +LNS LKA G + + ++ K + + + +S+ + + G + A
Sbjct: 460 VTTNILLNSTLKA----GDVNKAMELWKQISDSKIVRNSDTYTAMIDGFCKTGMLNVAKG 515
Query: 465 FMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTY 524
+ M S + L+ C G LD+A F++M +++ + +++++
Sbjct: 516 LLCKMRVSELQPSVFDYNCLLSSLCKEGSLDQAWRLFEEM-QRDNNFPDVVSFNIMIDGS 574
Query: 525 CSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPP- 583
K I + + + + L P TY +LI L +A+S M D GF P
Sbjct: 575 L-KAGDIKSAESLLVGMSRAGLSPDLFTYSKLINRFLKLGYLDEAISFFDKMVDSGFEPD 633
Query: 584 --FVDPFIKYVSKSGTSDDAIAFLKGMTSK 611
D +KY G +D +K + K
Sbjct: 634 AHICDSVLKYCISQGETDKLTELVKKLVDK 663
>sp|Q9SAJ5|PP133_ARATH Pentatricopeptide repeat-containing protein At1g79540
OS=Arabidopsis thaliana GN=At1g79540 PE=2 SV=1
Length = 780
Score = 58.9 bits (141), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 72/334 (21%), Positives = 137/334 (41%), Gaps = 13/334 (3%)
Query: 254 VERQLRDLNVTFSNDLVKFVVDKLGDEPKKAL--IFFRWAEESGFVKHDESSYNAMASVL 311
+E L L S +++ V+ DE + L FF WA S+ + +L
Sbjct: 47 IEPALEPLVPFLSKNIITSVIK---DEVNRQLGFRFFIWASRR-ERLRSRESFGLVIDML 102
Query: 312 GREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSV 371
++ D +W+ L+E++S G ++ ++ +++ M ++AV+ + +P V
Sbjct: 103 SEDNGCDLYWQTLEELKSGGVSVDSYCFCVLISAYAKMGMAEKAVESFGRMKEFDCRPDV 162
Query: 372 NCCTFLLRKIVVSKQLDMRLFSKVVRVFREN--GNVLTDAMLNSVLKALISVGRMGECNK 429
+LR ++ + M F+ + + N N+ T +L + L GR + K
Sbjct: 163 FTYNVILRVMMREEVFFMLAFAVYNEMLKCNCSPNLYTFGIL---MDGLYKKGRTSDAQK 219
Query: 430 ILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHC 489
+ M G + + + L G D+A + M+ SG+ +L+ G C
Sbjct: 220 MFDDMTGRGISPNRVTYTILISGLCQRGSADDARKLFYEMQTSGNYPDSVAHNALLDGFC 279
Query: 490 VAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPW 549
G + +A + ++ EK+G L++ R A + N +++ ++KP
Sbjct: 280 KLGRMVEAFELL-RLFEKDGFVLGLRGYSSLIDGLFRARRYTQAFELYANMLKK-NIKPD 337
Query: 550 HTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPP 583
Y LI+ L +DAL LL M G P
Sbjct: 338 IILYTILIQGLSKAGKIEDALKLLSSMPSKGISP 371
Score = 41.2 bits (95), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 57/249 (22%), Positives = 93/249 (37%), Gaps = 19/249 (7%)
Query: 344 GRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENG 403
G F R +A +LY + KP + T L++ + + +++ L K++ G
Sbjct: 312 GLFRARRYT-QAFELYANMLKKNIKPDIILYTILIQGLSKAGKIEDAL--KLLSSMPSKG 368
Query: 404 NVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEAN 463
N+V+KAL G + E + M E + + + + G EA
Sbjct: 369 ISPDTYCYNAVIKALCGRGLLEEGRSLQLEMSETESFPDACTHTILICSMCRNGLVREAE 428
Query: 464 EFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNT 523
E +E SG + +LI G C +G+L +A KM G L +
Sbjct: 429 EIFTEIEKSGCSPSVATFNALIDGLCKSGELKEARLLLHKM-------EVGRPASLFLRL 481
Query: 524 YCSKNRAIDACKFVHNCVREY-DL--------KPWHTTYEELIKNLLVQRGFKDALSLLC 574
S NR+ D + ++ Y DL P +Y LI AL LL
Sbjct: 482 SHSGNRSFDTMVESGSILKAYRDLAHFADTGSSPDIVSYNVLINGFCRAGDIDGALKLLN 541
Query: 575 LMKDHGFPP 583
+++ G P
Sbjct: 542 VLQLKGLSP 550
>sp|Q9ASZ8|PPR37_ARATH Pentatricopeptide repeat-containing protein At1g12620
OS=Arabidopsis thaliana GN=At1g12620 PE=2 SV=1
Length = 621
Score = 58.9 bits (141), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 73/324 (22%), Positives = 132/324 (40%), Gaps = 13/324 (4%)
Query: 331 GYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMR 390
GYE + T ++ V EA++L + + +KP++ L +V L+ +
Sbjct: 137 GYEPDTVTFSTLINGLCLEGRVSEALELVDRMVEMGHKPTL----ITLNALVNGLCLNGK 192
Query: 391 LFSKVVRVFR--ENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSK 448
+ V+ + R E G + VLK + G+ ++L+ MEE + S
Sbjct: 193 VSDAVLLIDRMVETGFQPNEVTYGPVLKVMCKSGQTALAMELLRKMEERKIKLDAVKYSI 252
Query: 449 IAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKE 508
I L G D A + ME G ++ +LI+G C AG D A + M++++
Sbjct: 253 IIDGLCKDGSLDNAFNLFNEMEIKGFKADIIIYTTLIRGFCYAGRWDDGAKLLRDMIKRK 312
Query: 509 GTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKD 568
T A L++ + + + +A + +H + + + P TY LI +
Sbjct: 313 ITPDV-VAFSALIDCFVKEGKLREA-EELHKEMIQRGISPDTVTYTSLIDGFCKENQLDK 370
Query: 569 ALSLLCLMKDHGFPPFVDPF---IKYVSKSGTSDDAIAFLKGMTSKRFPSMSVVL-CLFA 624
A +L LM G P + F I K+ DD + + M+ + + +V L
Sbjct: 371 ANHMLDLMVSKGCGPNIRTFNILINGYCKANLIDDGLELFRKMSLRGVVADTVTYNTLIQ 430
Query: 625 AFFQARRHSEAQDLLSK-CPRYVR 647
F + + A++L + R VR
Sbjct: 431 GFCELGKLEVAKELFQEMVSRRVR 454
Score = 49.3 bits (116), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 102/459 (22%), Positives = 187/459 (40%), Gaps = 78/459 (16%)
Query: 140 LESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLVDVMKKKG----- 194
LE EA + ++E + + T N ++ + ++G V + L+D M + G
Sbjct: 154 LEGRVSEALELVDRMVEM-GHKPTLITLNALVNGLCLNGKVSDAVLLIDRMVETGFQPNE 212
Query: 195 --YGVASHVRNK---------MTEKFEKEGLESDLEK----LKGIFATGSIDNSIEKVAS 239
YG V K + K E+ ++ D K + G+ GS+DN+
Sbjct: 213 VTYGPVLKVMCKSGQTALAMELLRKMEERKIKLDAVKYSIIIDGLCKDGSLDNAFNLFNE 272
Query: 240 RICKVVRSDI---------------WGDDVERQLRDL-NVTFSNDLVKF--VVDKLGDEP 281
K ++DI W DD + LRD+ + D+V F ++D E
Sbjct: 273 MEIKGFKADIIIYTTLIRGFCYAGRW-DDGAKLLRDMIKRKITPDVVAFSALIDCFVKEG 331
Query: 282 KKALIFFRWAEE------SGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEME 335
K R AEE + D +Y ++ +E+ +D+ +LD M SKG
Sbjct: 332 K-----LREAEELHKEMIQRGISPDTVTYTSLIDGFCKENQLDKANHMLDLMVSKGCGPN 386
Query: 336 METCVKVLGRFSERNMVKEAVDLY-EFAMACKNKPSVNCCTFL-----LRKIVVSKQLDM 389
+ T ++ + + N++ + ++L+ + ++ +V T + L K+ V+K+L
Sbjct: 387 IRTFNILINGYCKANLIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLEVAKELFQ 446
Query: 390 RLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKI 449
+ S+ VR + +L D + ++ GE K L+ E+ I S M+ I
Sbjct: 447 EMVSRRVRPDIVSYKILLDGLCDN-----------GEPEKALEIFEK---IEKSKMELDI 492
Query: 450 AF------RLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQK 503
+ +A K D+A + + G K + +I G C G L +A F+K
Sbjct: 493 GIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPDVKTYNIMIGGLCKKGSLSEADLLFRK 552
Query: 504 MVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVR 542
M E++G S G ++L+ + + A + K + R
Sbjct: 553 M-EEDGHSPNGCTYNILIRAHLGEGDATKSAKLIEEIKR 590
Score = 33.9 bits (76), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 63/331 (19%), Positives = 124/331 (37%), Gaps = 14/331 (4%)
Query: 284 ALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVL 343
A+ R EE +K D Y+ + L ++ +D + + +EM KG++ ++ ++
Sbjct: 231 AMELLRKMEERK-IKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIIIYTTLI 289
Query: 344 GRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENG 403
F + L + K P V + L+ V K+ +R ++ + + G
Sbjct: 290 RGFCYAGRWDDGAKLLRDMIKRKITPDVVAFSALIDCFV--KEGKLREAEELHKEMIQRG 347
Query: 404 NVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEAN 463
S++ ++ + N +L M G + + + A D+
Sbjct: 348 ISPDTVTYTSLIDGFCKENQLDKANHMLDLMVSKGCGPNIRTFNILINGYCKANLIDDGL 407
Query: 464 EFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNT 523
E M G + +LI+G C G L+ A + FQ+MV + + +L++
Sbjct: 408 ELFRKMSLRGVVADTVTYNTLIQGFCELGKLEVAKELFQEMVSRRVRPDI-VSYKILLDG 466
Query: 524 YCSKN---RAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHG 580
C +A++ + + E D+ Y +I + DA L C + G
Sbjct: 467 LCDNGEPEKALEIFEKIEKSKMELDI----GIYNIIIHGMCNASKVDDAWDLFCSLPLKG 522
Query: 581 FPPFVDPF---IKYVSKSGTSDDAIAFLKGM 608
P V + I + K G+ +A + M
Sbjct: 523 VKPDVKTYNIMIGGLCKKGSLSEADLLFRKM 553
>sp|Q9FKR3|PP404_ARATH Pentatricopeptide repeat-containing protein At5g38730
OS=Arabidopsis thaliana GN=At5g38730 PE=2 SV=1
Length = 596
Score = 58.5 bits (140), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 55/240 (22%), Positives = 97/240 (40%), Gaps = 9/240 (3%)
Query: 346 FSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDM--RLFSKVVRVFRENG 403
+++ M+ +++ ++E +C KP + CT LL +V + D ++F K+V++ G
Sbjct: 143 YAKAGMINDSIVVFEQIRSCGLKPHLQACTVLLNSLVKQRLTDTVWKIFKKMVKL----G 198
Query: 404 NVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEAN 463
V + N ++ A G + K+L MEE G + + EA
Sbjct: 199 VVANIHVYNVLVHACSKSGDPEKAEKLLSEMEEKGVFPDIFTYNTLISVYCKKSMHFEAL 258
Query: 464 EFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNT 523
D ME SG + S I G G + +A F+++ + +H Y L++
Sbjct: 259 SVQDRMERSGVAPNIVTYNSFIHGFSREGRMREATRLFREIKDDVTANHVTYTT--LIDG 316
Query: 524 YCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPP 583
YC N ID + + P TY +++ L ++A LL M P
Sbjct: 317 YCRMND-IDEALRLREVMESRGFSPGVVTYNSILRKLCEDGRIREANRLLTEMSGKKIEP 375
Score = 46.6 bits (109), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 74/344 (21%), Positives = 137/344 (39%), Gaps = 19/344 (5%)
Query: 304 YNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAM 363
YN + + ++ K+L EM KG ++ T ++ + +++M EA+ + +
Sbjct: 206 YNVLVHACSKSGDPEKAEKLLSEMEEKGVFPDIFTYNTLISVYCKKSMHFEALSVQDRME 265
Query: 364 ACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVG- 422
P++ + S++ MR + R+FRE + D N V + G
Sbjct: 266 RSGVAPNIVTYNSFIHGF--SREGRMR---EATRLFRE---IKDDVTANHVTYTTLIDGY 317
Query: 423 -RMGECNKILK---AMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGD 478
RM + ++ L+ ME GF + I +L G+ EAN + M + +
Sbjct: 318 CRMNDIDEALRLREVMESRGFSPGVVTYNSILRKLCEDGRIREANRLLTEMSGKKIEPDN 377
Query: 479 KMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVH 538
+LI +C D+ A +KM+E G Y+ L++ +C +A + +
Sbjct: 378 ITCNTLINAYCKIEDMVSAVKVKKKMIE-SGLKLDMYSYKALIHGFCKVLELENAKEELF 436
Query: 539 NCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPF---IKYVSKS 595
+ + E P + TY L+ Q + LL + G V + I+ + K
Sbjct: 437 SMI-EKGFSPGYATYSWLVDGFYNQNKQDEITKLLEEFEKRGLCADVALYRGLIRRICKL 495
Query: 596 GTSDDAIAFLKGMTSKRFPSMSVVLCLFA-AFFQARRHSEAQDL 638
D A + M K SV+ A A+++ + +EA L
Sbjct: 496 EQVDYAKVLFESMEKKGLVGDSVIFTTMAYAYWRTGKVTEASAL 539
Score = 42.0 bits (97), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 74/337 (21%), Positives = 125/337 (37%), Gaps = 13/337 (3%)
Query: 179 LVQEFWGLVDVMKKKGYGVASHVRNKMTEKFEKEGLESDLEKL------KGIFATGSIDN 232
L W + M K G HV N + K G EKL KG+F N
Sbjct: 183 LTDTVWKIFKKMVKLGVVANIHVYNVLVHACSKSGDPEKAEKLLSEMEEKGVFPDIFTYN 242
Query: 233 SIEKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAE 292
++ V + + D +ER N+ N + + ++A FR +
Sbjct: 243 TLISVYCKKSMHFEALSVQDRMERSGVAPNIVTYNSFIHGFSRE--GRMREATRLFREIK 300
Query: 293 ESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMV 352
+ V + +Y + R + ID ++ + M S+G+ + T +L + E +
Sbjct: 301 DD--VTANHVTYTTLIDGYCRMNDIDEALRLREVMESRGFSPGVVTYNSILRKLCEDGRI 358
Query: 353 KEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLN 412
+EA L K +P C L+ K DM KV + E+G L
Sbjct: 359 REANRLLTEMSGKKIEPDNITCNTLIN--AYCKIEDMVSAVKVKKKMIESGLKLDMYSYK 416
Query: 413 SVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEAS 472
+++ V + + L +M E GF S + + K+DE + ++ E
Sbjct: 417 ALIHGFCKVLELENAKEELFSMIEKGFSPGYATYSWLVDGFYNQNKQDEITKLLEEFEKR 476
Query: 473 GSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEG 509
G ++ LI+ C +D A F+ M EK+G
Sbjct: 477 GLCADVALYRGLIRRICKLEQVDYAKVLFESM-EKKG 512
>sp|Q6NQ83|PP247_ARATH Pentatricopeptide repeat-containing protein At3g22470,
mitochondrial OS=Arabidopsis thaliana GN=At3g22470 PE=2
SV=1
Length = 619
Score = 58.5 bits (140), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 78/364 (21%), Positives = 145/364 (39%), Gaps = 13/364 (3%)
Query: 284 ALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVL 343
L F + E +G ++HD + M + R+ + + VL GYE + T ++
Sbjct: 89 VLGFCKGMELNG-IEHDMYTMTIMINCYCRKKKLLFAFSVLGRAWKLGYEPDTITFSTLV 147
Query: 344 GRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLD--MRLFSKVVRVFRE 401
F V EAV L + + K +P + + L+ + + ++ + L ++V +
Sbjct: 148 NGFCLEGRVSEAVALVDRMVEMKQRPDLVTVSTLINGLCLKGRVSEALVLIDRMVEYGFQ 207
Query: 402 NGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDE 461
V +LN + K+ G + + MEE AS S + L G D+
Sbjct: 208 PDEVTYGPVLNRLCKS----GNSALALDLFRKMEERNIKASVVQYSIVIDSLCKDGSFDD 263
Query: 462 ANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLV 521
A + ME G + SLI G C G D A ++M+ + L+
Sbjct: 264 ALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDV-VTFSALI 322
Query: 522 NTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGF 581
+ + + + ++A K ++N + + P TY LI + +A + LM G
Sbjct: 323 DVFVKEGKLLEA-KELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKGC 381
Query: 582 PPFVDPF---IKYVSKSGTSDDAIAFLKGMTSKRF-PSMSVVLCLFAAFFQARRHSEAQD 637
P + + I K+ DD + + ++SK P+ L F Q+ + + A++
Sbjct: 382 EPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKE 441
Query: 638 LLSK 641
L +
Sbjct: 442 LFQE 445
Score = 56.2 bits (134), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 79/351 (22%), Positives = 147/351 (41%), Gaps = 12/351 (3%)
Query: 237 VASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPK--KALIFFRWAEES 294
V +R+CK S + D+ R++ + N+ S V+D L + AL F E
Sbjct: 216 VLNRLCKSGNSAL-ALDLFRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMK 274
Query: 295 GFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKE 354
G +K D +Y+++ L + D K+L EM + ++ T ++ F + + E
Sbjct: 275 G-IKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLE 333
Query: 355 AVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDM--RLFSKVVRVFRENGNVLTDAMLN 412
A +LY + P L+ L ++F +V E V ++N
Sbjct: 334 AKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILIN 393
Query: 413 SVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEAS 472
S KA R+ + ++ + + G I ++ + + +GK + A E M +
Sbjct: 394 SYCKA----KRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSR 449
Query: 473 GSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAID 532
G + L+ G C G+L+KA + F+KM + T G +++++ C+ ++ D
Sbjct: 450 GVPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMTLGIGIY-NIIIHGMCNASKVDD 508
Query: 533 ACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPP 583
A + + + +KP TY +I L + +A L MK+ G P
Sbjct: 509 AWSLFCS-LSDKGVKPDVVTYNVMIGGLCKKGSLSEADMLFRKMKEDGCTP 558
>sp|Q9SR00|PP213_ARATH Pentatricopeptide repeat-containing protein At3g04760,
chloroplastic OS=Arabidopsis thaliana GN=At3g04760 PE=2
SV=1
Length = 602
Score = 58.5 bits (140), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 78/382 (20%), Positives = 152/382 (39%), Gaps = 41/382 (10%)
Query: 296 FVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEA 355
F + D +YNA+ + + + ID +VLD MRSK + + T ++G R + A
Sbjct: 153 FGQPDVFAYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLA 212
Query: 356 VDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVL 415
+ + ++ +P+V T L+ ++ +D L K++ G N+++
Sbjct: 213 LKVLNQLLSDNCQPTVITYTILIEATMLEGGVDEAL--KLMDEMLSRGLKPDMFTYNTII 270
Query: 416 KALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSD 475
+ + G + ++++ +E G + + L + GK +E + M M + D
Sbjct: 271 RGMCKEGMVDRAFEMVRNLELKGCEPDVISYNILLRALLNQGKWEEGEKLMTKMFSEKCD 330
Query: 476 VGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACK 535
+ LI C G +++A + + M EK G + Y+ D L+ +C + R A +
Sbjct: 331 PNVVTYSILITTLCRDGKIEEAMNLLKLMKEK-GLTPDAYSYDPLIAAFCREGRLDVAIE 389
Query: 536 FVHNCVRE---YDLKPWHTTYEELIKNLLVQRGFK------------------------- 567
F+ + + D+ ++T L KN + +
Sbjct: 390 FLETMISDGCLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVGCSPNSSSYNTMFSALW 449
Query: 568 ------DALSLLCLMKDHGFPP---FVDPFIKYVSKSGTSDDAIAFLKGMTSKRF-PSMS 617
AL ++ M +G P + I + + G D+A L M S F PS+
Sbjct: 450 SSGDKIRALHMILEMMSNGIDPDEITYNSMISCLCREGMVDEAFELLVDMRSCEFHPSVV 509
Query: 618 VVLCLFAAFFQARRHSEAQDLL 639
+ F +A R +A ++L
Sbjct: 510 TYNIVLLGFCKAHRIEDAINVL 531
Score = 57.0 bits (136), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 71/292 (24%), Positives = 126/292 (43%), Gaps = 10/292 (3%)
Query: 323 VLDEMRSKGYEMEMETCVKVL-GRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKI 381
+L+ M KGY ++ C K++ G F+ RN+ K AV + E + +P V L+
Sbjct: 111 LLETMVRKGYNPDVILCTKLIKGFFTLRNIPK-AVRVMEI-LEKFGQPDVFAYNALINGF 168
Query: 382 VVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIA 441
++D ++V+ R N ++ +L S G++ K+L +
Sbjct: 169 CKMNRIDDA--TRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLALKVLNQLLSDNCQP 226
Query: 442 SSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCF 501
+ + + G DEA + MD M + G + ++I+G C G +D+A +
Sbjct: 227 TVITYTILIEATMLEGGVDEALKLMDEMLSRGLKPDMFTYNTIIRGMCKEGMVDRAFEMV 286
Query: 502 QKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLL 561
+ + E +G + ++L+ ++ + + K + E P TY LI L
Sbjct: 287 RNL-ELKGCEPDVISYNILLRALLNQGKWEEGEKLMTKMFSE-KCDPNVVTYSILITTLC 344
Query: 562 VQRGFKDALSLLCLMKDHGFPPFV---DPFIKYVSKSGTSDDAIAFLKGMTS 610
++A++LL LMK+ G P DP I + G D AI FL+ M S
Sbjct: 345 RDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLETMIS 396
Score = 56.6 bits (135), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 62/294 (21%), Positives = 144/294 (48%), Gaps = 16/294 (5%)
Query: 116 DISKQLELSGV---VFTHEMVLKVLKNLESSPDEARRFFNWVLEKESERLSSKTYNLMLR 172
++ + LEL G V ++ ++L+ L N + +E + + ++ + + TY++++
Sbjct: 284 EMVRNLELKGCEPDVISYNILLRALLN-QGKWEEGEKLMTKMFSEKCDP-NVVTYSILIT 341
Query: 173 IVGVHGLVQEFWGLVDVMKKKGYGVASHVRNKMTEKFEKEG-LESDLEKLKGIFATGSID 231
+ G ++E L+ +MK+KG ++ + + F +EG L+ +E L+ + + G +
Sbjct: 342 TLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLETMISDGCLP 401
Query: 232 NSIE--KVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKL---GDEPKKALI 286
+ + V + +CK ++D ++ +L ++ + ++ + L GD+ + +
Sbjct: 402 DIVNYNTVLATLCKNGKAD-QALEIFGKLGEVGCSPNSSSYNTMFSALWSSGDKIRALHM 460
Query: 287 FFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRF 346
S + DE +YN+M S L RE +D +++L +MRS + + T VL F
Sbjct: 461 ILEMM--SNGIDPDEITYNSMISCLCREGMVDEAFELLVDMRSCEFHPSVVTYNIVLLGF 518
Query: 347 SERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVS--KQLDMRLFSKVVRV 398
+ + +++A+++ E + +P+ T L+ I + + M L + +VR+
Sbjct: 519 CKAHRIEDAINVLESMVGNGCRPNETTYTVLIEGIGFAGYRAEAMELANDLVRI 572
Score = 35.4 bits (80), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 49/287 (17%), Positives = 116/287 (40%), Gaps = 4/287 (1%)
Query: 297 VKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAV 356
+K D +YN + + +E +DR ++++ + KG E ++ + +L + +E
Sbjct: 259 LKPDMFTYNTIIRGMCKEGMVDRAFEMVRNLELKGCEPDVISYNILLRALLNQGKWEEGE 318
Query: 357 DLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLK 416
L + K P+V + L+ + +++ + ++++ +E G + ++
Sbjct: 319 KLMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAM--NLLKLMKEKGLTPDAYSYDPLIA 376
Query: 417 ALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDV 476
A GR+ + L+ M G + + + L GK D+A E + G
Sbjct: 377 AFCREGRLDVAIEFLETMISDGCLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVGCSP 436
Query: 477 GDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKF 536
+ ++ +GD +A +M+ G + +++ C + +A +
Sbjct: 437 NSSSYNTMFSALWSSGDKIRALHMILEMMSN-GIDPDEITYNSMISCLCREGMVDEAFEL 495
Query: 537 VHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPP 583
+ + +R + P TY ++ +DA+++L M +G P
Sbjct: 496 LVD-MRSCEFHPSVVTYNIVLLGFCKAHRIEDAINVLESMVGNGCRP 541
>sp|Q9LFC5|PP360_ARATH Pentatricopeptide repeat-containing protein At5g01110
OS=Arabidopsis thaliana GN=At5g01110 PE=2 SV=1
Length = 729
Score = 58.2 bits (139), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 101/431 (23%), Positives = 171/431 (39%), Gaps = 25/431 (5%)
Query: 166 TYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRNKMTEKFEKEGLESDLEKLKGIF 225
TYN ++ GL++E + L++ M KG+ + N + K G E+ K +F
Sbjct: 272 TYNTLISAYSSKGLMEEAFELMNAMPGKGFSPGVYTYNTVINGLCKHG---KYERAKEVF 328
Query: 226 A----TG-SIDNSIEK-VASRICK---VVRSD-IWGDDVERQLRDLNVTFSNDLVKFVVD 275
A +G S D++ + + CK VV ++ ++ D R + V FS+ + F
Sbjct: 329 AEMLRSGLSPDSTTYRSLLMEACKKGDVVETEKVFSDMRSRDVVPDLVCFSSMMSLFTRS 388
Query: 276 KLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEME 335
D KAL++F +E+G + D Y + R+ I + +EM +G M+
Sbjct: 389 GNLD---KALMYFNSVKEAGLIP-DNVIYTILIQGYCRKGMISVAMNLRNEMLQQGCAMD 444
Query: 336 METCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRK--IVVSKQLDMRLFS 393
+ T +L +R M+ EA L+ P T L+ + + Q M LF
Sbjct: 445 VVTYNTILHGLCKRKMLGEADKLFNEMTERALFPDSYTLTILIDGHCKLGNLQNAMELFQ 504
Query: 394 KVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRL 453
K+ +E L N++L VG + +I M + + S + L
Sbjct: 505 KM----KEKRIRLDVVTYNTLLDGFGKVGDIDTAKEIWADMVSKEILPTPISYSILVNAL 560
Query: 454 SSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHA 513
S G EA D M + + S+IKG+C +G+ +KM+ EG
Sbjct: 561 CSKGHLAEAFRVWDEMISKNIKPTVMICNSMIKGYCRSGNASDGESFLEKMIS-EGFVPD 619
Query: 514 GYAIDLLVNTYCSKNRAIDACKFVHNCVREY-DLKPWHTTYEELIKNLLVQRGFKDALSL 572
+ + L+ + + A V E L P TY ++ Q K+A +
Sbjct: 620 CISYNTLIYGFVREENMSKAFGLVKKMEEEQGGLVPDVFTYNSILHGFCRQNQMKEAEVV 679
Query: 573 LCLMKDHGFPP 583
L M + G P
Sbjct: 680 LRKMIERGVNP 690
Score = 50.4 bits (119), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 100/476 (21%), Positives = 171/476 (35%), Gaps = 56/476 (11%)
Query: 178 GLVQEFWGLVDVMKKKGYGVASHVRNKMTEKFEKEGLESDLEKLKGIFATGSIDNSIEKV 237
G V+ WG+ + + G G+ + N M K+G +EKV
Sbjct: 214 GWVELAWGVYQEISRSGVGINVYTLNIMVNALCKDG-------------------KMEKV 254
Query: 238 ASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFV 297
+ + +V ++ D V T++ + + L +E A GF
Sbjct: 255 GTFLSQVQEKGVYPDIV---------TYNTLISAYSSKGLMEE---AFELMNAMPGKGF- 301
Query: 298 KHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVD 357
+YN + + L + +R +V EM G + T +L ++ V E
Sbjct: 302 SPGVYTYNTVINGLCKHGKYERAKEVFAEMLRSGLSPDSTTYRSLLMEACKKGDVVETEK 361
Query: 358 LYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRL--FSKVVRVFRENGNVLTDAMLNSVL 415
++ + P + C + ++ S LD L F+ V +E G + + + ++
Sbjct: 362 VFSDMRSRDVVPDLVCFSSMMSLFTRSGNLDKALMYFNSV----KEAGLIPDNVIYTILI 417
Query: 416 KALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSD 475
+ G + + M + G + I L EA++ + M
Sbjct: 418 QGYCRKGMISVAMNLRNEMLQQGCAMDVVTYNTILHGLCKRKMLGEADKLFNEMTERALF 477
Query: 476 VGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCS------KNR 529
LI GHC G+L A + FQKM EK I L V TY + K
Sbjct: 478 PDSYTLTILIDGHCKLGNLQNAMELFQKMKEKR--------IRLDVVTYNTLLDGFGKVG 529
Query: 530 AIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFV---D 586
ID K + + ++ P +Y L+ L + +A + M P V +
Sbjct: 530 DIDTAKEIWADMVSKEILPTPISYSILVNALCSKGHLAEAFRVWDEMISKNIKPTVMICN 589
Query: 587 PFIKYVSKSGTSDDAIAFLKGMTSKRF-PSMSVVLCLFAAFFQARRHSEAQDLLSK 641
IK +SG + D +FL+ M S+ F P L F + S+A L+ K
Sbjct: 590 SMIKGYCRSGNASDGESFLEKMISEGFVPDCISYNTLIYGFVREENMSKAFGLVKK 645
>sp|Q9FIX3|PP407_ARATH Pentatricopeptide repeat-containing protein At5g39710
OS=Arabidopsis thaliana GN=EMB2745 PE=2 SV=1
Length = 747
Score = 58.2 bits (139), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 78/345 (22%), Positives = 128/345 (37%), Gaps = 47/345 (13%)
Query: 303 SYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFA 362
SYN + + L RE + VL EM +GY ++ T ++ + + +A+ ++
Sbjct: 277 SYNVVINGLCREGRMKEVSFVLTEMNRRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEM 336
Query: 363 MACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVG 422
+ PSV + ++++S+ KA G
Sbjct: 337 LRHGLTPSV---------------------------------ITYTSLIHSMCKA----G 359
Query: 423 RMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWV 482
M + L M G + + + S G +EA + M +G +
Sbjct: 360 NMNRAMEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYN 419
Query: 483 SLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVR 542
+LI GHCV G ++ A + M EK G S + +++ +C ++ +D V +
Sbjct: 420 ALINGHCVTGKMEDAIAVLEDMKEK-GLSPDVVSYSTVLSGFC-RSYDVDEALRVKREMV 477
Query: 543 EYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPF-----IKYVSKSGT 597
E +KP TY LI+ QR K+A L M G PP D F I G
Sbjct: 478 EKGIKPDTITYSSLIQGFCEQRRTKEACDLYEEMLRVGLPP--DEFTYTALINAYCMEGD 535
Query: 598 SDDAIAFLKGMTSKR-FPSMSVVLCLFAAFFQARRHSEAQDLLSK 641
+ A+ M K P + L + R EA+ LL K
Sbjct: 536 LEKALQLHNEMVEKGVLPDVVTYSVLINGLNKQSRTREAKRLLLK 580
Score = 48.9 bits (115), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 77/324 (23%), Positives = 137/324 (42%), Gaps = 63/324 (19%)
Query: 250 WGDDVERQLRDLNVT-FSNDLVKF--------VVDKLGDEPKKALIFFRWAEESGFVKHD 300
+ ++ R LR++N FS +V + V K+ D A+ +E G + D
Sbjct: 395 YMNEAYRVLREMNDNGFSPSVVTYNALINGHCVTGKMED----AIAVLEDMKEKG-LSPD 449
Query: 301 ESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYE 360
SY+ + S R +D +V EM KG + + T ++ F E+ KEA DLYE
Sbjct: 450 VVSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPDTITYSSLIQGFCEQRRTKEACDLYE 509
Query: 361 FAMACKNKPSVNCCTFLLRKIVVSKQLD--MRLFSKVVRVFRENGNVLTDAMLNSVL-KA 417
+ P T L+ + L+ ++L +++V E G VL D + SVL
Sbjct: 510 EMLRVGLPPDEFTYTALINAYCMEGDLEKALQLHNEMV----EKG-VLPDVVTYSVLING 564
Query: 418 LISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVG 477
L R E ++L + ++ S + + + + S++
Sbjct: 565 LNKQSRTREAKRLLLKL-----FYEESVPSDVTYHT---------------LIENCSNIE 604
Query: 478 DKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHA--GYAIDLLVNTYCSKNRAIDACK 535
K VSLIKG C+ G + +A F+ M+ G +H G A +++++ +C
Sbjct: 605 FKSVVSLIKGFCMKGMMTEADQVFESML---GKNHKPDGTAYNIMIHGHC---------- 651
Query: 536 FVHNCVREYDLKPWHTTYEELIKN 559
R D++ +T Y+E++K+
Sbjct: 652 ------RAGDIRKAYTLYKEMVKS 669
Score = 41.2 bits (95), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 50/194 (25%), Positives = 72/194 (37%), Gaps = 39/194 (20%)
Query: 484 LIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFV------ 537
LI+G C AG++D A F KM E +G + L++ YC + D K +
Sbjct: 211 LIRGFCFAGNIDVALTLFDKM-ETKGCLPNVVTYNTLIDGYCKLRKIDDGFKLLRSMALK 269
Query: 538 --------HNCV-----REYDLKPW---------------HTTYEELIKNLLVQRGFKDA 569
+N V RE +K TY LIK + F A
Sbjct: 270 GLEPNLISYNVVINGLCREGRMKEVSFVLTEMNRRGYSLDEVTYNTLIKGYCKEGNFHQA 329
Query: 570 LSLLCLMKDHGFPPFVDPF---IKYVSKSGTSDDAIAFLKGMTSKRF-PSMSVVLCLFAA 625
L + M HG P V + I + K+G + A+ FL M + P+ L
Sbjct: 330 LVMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLCPNERTYTTLVDG 389
Query: 626 FFQARRHSEAQDLL 639
F Q +EA +L
Sbjct: 390 FSQKGYMNEAYRVL 403
>sp|Q9SVH3|PP328_ARATH Pentatricopeptide repeat-containing protein At4g20740
OS=Arabidopsis thaliana GN=At4g20740 PE=3 SV=1
Length = 727
Score = 57.8 bits (138), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 92/422 (21%), Positives = 160/422 (37%), Gaps = 54/422 (12%)
Query: 250 WGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMAS 309
WG V +L L + + + V KLG++ A FF WA + KHD ++YNA A
Sbjct: 109 WGPSVVSELNKLRRVTPSIVAE--VLKLGNDAAVAAKFFHWAGKQKGYKHDFAAYNAFAY 166
Query: 310 VLGRED---CIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACK 366
L R D+ +++D E + E +++ ++ +YE
Sbjct: 167 CLNRNGHFRAADQLPELMDSQGRPPSEKQFEILIRM---HADNRRGLRVYYVYEKMKKFG 223
Query: 367 NKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGE 426
KP V ++ +V + D+ L V F+E+G V ++K L GR+ E
Sbjct: 224 FKPRVFLYNRIMDALVKNGYFDLAL--AVYEDFKEDGLVEESTTFMILVKGLCKAGRIEE 281
Query: 427 CNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIK 486
+IL+ M E + + L S G D + D M + +L+
Sbjct: 282 MLEILQRMRENLCKPDVFAYTAMIKTLVSEGNLDASLRVWDEMRRDEIKPDVMAYGTLVV 341
Query: 487 GHCVAGDLDKAADCFQKMVEK-----------------------------EGTSHAGYAI 517
G C G +++ + F +M K E +GY
Sbjct: 342 GLCKDGRVERGYELFMEMKGKQILIDREIYRVLIEGFVADGKVRSACNLWEDLVDSGYIA 401
Query: 518 DL-----LVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSL 572
D+ ++ CS N+ A K + E +L+P T ++ +V D ++
Sbjct: 402 DIGIYNAVIKGLCSVNQVDKAYKLFQVAIEE-ELEPDFETLSPIMVAYVVMNRLSDFSNV 460
Query: 573 LCLMKDHGFP--PFVDPFIKYV----SKSGTSDDAIAFLKGMTSKRFPSMSVVLCLFAAF 626
L + + G+P ++ F K + K+ + D LK +K S+SV L A
Sbjct: 461 LERIGELGYPVSDYLTQFFKLLCADEEKNAMALDVFYILK---TKGHGSVSVYNILMEAL 517
Query: 627 FQ 628
++
Sbjct: 518 YK 519
Score = 33.5 bits (75), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 54/277 (19%), Positives = 111/277 (40%), Gaps = 6/277 (2%)
Query: 297 VKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAV 356
+K D +Y + L ++ ++R +++ EM+ K ++ E ++ F V+ A
Sbjct: 329 IKPDVMAYGTLVVGLCKDGRVERGYELFMEMKGKQILIDREIYRVLIEGFVADGKVRSAC 388
Query: 357 DLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLK 416
+L+E + + +++ + Q+D K+ +V E L+ ++
Sbjct: 389 NLWEDLVDSGYIADIGIYNAVIKGLCSVNQVDKAY--KLFQVAIEEELEPDFETLSPIMV 446
Query: 417 ALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDV 476
A + + R+ + + +L+ + E G+ S + + K A + ++ G
Sbjct: 447 AYVVMNRLSDFSNVLERIGELGYPVSDYLTQFFKLLCADEEKNAMALDVFYILKTKGHG- 505
Query: 477 GDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKF 536
++ L++ GD+ K+ F +M K G + + + + K AC F
Sbjct: 506 SVSVYNILMEALYKMGDIQKSLSLFYEM-RKLGFEPDSSSYSIAICCFVEKGDVKAACSF 564
Query: 537 VHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLL 573
H + E P Y L K L Q G DA+ LL
Sbjct: 565 -HEKIIEMSCVPSIAAYLSLTKG-LCQIGEIDAVMLL 599
>sp|P0C894|PP143_ARATH Putative pentatricopeptide repeat-containing protein At2g02150
OS=Arabidopsis thaliana GN=At2g02150 PE=3 SV=1
Length = 761
Score = 57.8 bits (138), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 88/434 (20%), Positives = 176/434 (40%), Gaps = 13/434 (2%)
Query: 145 DEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRNK 204
D+ +RFF ++ R + TYN+M+ + G V+ GL + MK +G + N
Sbjct: 244 DDVKRFFKDMI-GAGARPTVFTYNIMIDCMCKEGDVEAARGLFEEMKFRGLVPDTVTYNS 302
Query: 205 MTEKFEKEGLESD----LEKLKGIFATGSIDNSIEKVASRICKVVRSDIWGDDVERQLRD 260
M + F K G D E++K + + + + + CK + I G + R+++
Sbjct: 303 MIDGFGKVGRLDDTVCFFEEMKDMCCEPDV-ITYNALINCFCKFGKLPI-GLEFYREMKG 360
Query: 261 LNVTFSNDLVKFVVDKLGDEP--KKALIFFRWAEESGFVKHDESSYNAMASVLGREDCID 318
+ + +VD E ++A+ F+ G V +E +Y ++ + +
Sbjct: 361 NGLKPNVVSYSTLVDAFCKEGMMQQAIKFYVDMRRVGLVP-NEYTYTSLIDANCKIGNLS 419
Query: 319 RFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLL 378
+++ +EM G E + T ++ + +KEA +L+ P++ L+
Sbjct: 420 DAFRLGNEMLQVGVEWNVVTYTALIDGLCDAERMKEAEELFGKMDTAGVIPNLASYNALI 479
Query: 379 RKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGG 438
V +K +D L +++ + G + + + L S+ ++ ++ M+E G
Sbjct: 480 HGFVKAKNMDRAL--ELLNELKGRGIKPDLLLYGTFIWGLCSLEKIEAAKVVMNEMKECG 537
Query: 439 FIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAA 498
A+S + + + +G E +D M+ +V + LI G C + KA
Sbjct: 538 IKANSLIYTTLMDAYFKSGNPTEGLHLLDEMKELDIEVTVVTFCVLIDGLCKNKLVSKAV 597
Query: 499 DCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIK 558
D F ++ G +++ C N+ A V++ L P T Y L+
Sbjct: 598 DYFNRISNDFGLQANAAIFTAMIDGLCKDNQVEAATTLFEQMVQK-GLVPDRTAYTSLMD 656
Query: 559 NLLVQRGFKDALSL 572
Q +AL+L
Sbjct: 657 GNFKQGNVLEALAL 670
Score = 55.1 bits (131), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 77/334 (23%), Positives = 132/334 (39%), Gaps = 29/334 (8%)
Query: 243 KVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDES 302
KVV +D+W D +L DL T + V V+ +L ++PK A FF+W+ KH
Sbjct: 86 KVVHNDLWDDPGLEKLFDL--TLAPIWVPRVLVELKEDPKLAFKFFKWSMTRNGFKHSVE 143
Query: 303 SYNAMASVLGREDCIDRFW---KVLDEMRSKGYEMEM--------ETCVKVLGRFSERNM 351
SY +A +L C ++ VL EM + ++ CV G F
Sbjct: 144 SYCIVAHILF---CARMYYDANSVLKEMVLSKADCDVFDVLWSTRNVCVPGFGVFDALFS 200
Query: 352 VKEAVDLYEFAMACKNK-------PSVNCCTFLLRKIV-VSKQLDMRLFSKVVRVFRENG 403
V + + E A+ C +K P C LL + + K D++ F K +
Sbjct: 201 VLIDLGMLEEAIQCFSKMKRFRVFPKTRSCNGLLHRFAKLGKTDDVKRFFKDMIGAGARP 260
Query: 404 NVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEAN 463
V T N ++ + G + + + M+ G + + + + G+ D+
Sbjct: 261 TVFT---YNIMIDCMCKEGDVEAARGLFEEMKFRGLVPDTVTYNSMIDGFGKVGRLDDTV 317
Query: 464 EFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNT 523
F + M+ + + +LI C G L + +++M + G + LV+
Sbjct: 318 CFFEEMKDMCCEPDVITYNALINCFCKFGKLPIGLEFYREM-KGNGLKPNVVSYSTLVDA 376
Query: 524 YCSKNRAIDACKFVHNCVREYDLKPWHTTYEELI 557
+C + A KF + +R L P TY LI
Sbjct: 377 FCKEGMMQQAIKFYVD-MRRVGLVPNEYTYTSLI 409
>sp|Q9SV26|PP297_ARATH Pentatricopeptide repeat-containing protein At4g01030,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H65 PE=3
SV=2
Length = 768
Score = 57.8 bits (138), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 78/340 (22%), Positives = 136/340 (40%), Gaps = 35/340 (10%)
Query: 302 SSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEF 361
SS+N++ S + +D +LDEM G + ++ T +L ++ + + K+A+ + +
Sbjct: 156 SSWNSILSSYTKLGYVDDAIGLLDEMEICGLKPDIVTWNSLLSGYASKGLSKDAIAVLKR 215
Query: 362 AMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKAL-IS 420
KPS + + LL+ + L + K + + + D + + L + I
Sbjct: 216 MQIAGLKPSTSSISSLLQAVAEPGHLKL---GKAIHGYILRNQLWYDVYVETTLIDMYIK 272
Query: 421 VGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKM 480
G + + M+ +A +++ S +++ A +A M ME G
Sbjct: 273 TGYLPYARMVFDMMDAKNIVAWNSLVSGLSY----ACLLKDAEALMIRMEKEGIKPDAIT 328
Query: 481 WVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLL----VNTYCSKNRAIDACKF 536
W SL G+ G +KA D KM EK G A +++ + + CSKN
Sbjct: 329 WNSLASGYATLGKPEKALDVIGKMKEK------GVAPNVVSWTAIFSGCSKNGNFRNALK 382
Query: 537 VHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKD-HGF---------PPFVD 586
V ++E + P T L+K L LSLL K+ HGF
Sbjct: 383 VFIKMQEEGVGPNAATMSTLLKIL-------GCLSLLHSGKEVHGFCLRKNLICDAYVAT 435
Query: 587 PFIKYVSKSGTSDDAIAFLKGMTSKRFPSMSVVLCLFAAF 626
+ KSG AI G+ +K S + +L +A F
Sbjct: 436 ALVDMYGKSGDLQSAIEIFWGIKNKSLASWNCMLMGYAMF 475
Score = 33.5 bits (75), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 54/286 (18%), Positives = 113/286 (39%), Gaps = 12/286 (4%)
Query: 298 KHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVD 357
K D+ ++N + V R ++ ++ EM+ G + T VK+L S + E
Sbjct: 51 KRDDLAWNEIVMVNLRSGNWEKAVELFREMQFSGAKAYDSTMVKLLQVCSNKEGFAEGRQ 110
Query: 358 LYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKA 417
++ + + + +V+ C L+ ++ S+ + L KV ++ + NS+L +
Sbjct: 111 IHGYVLRLGLESNVSMCNSLI--VMYSRNGKLELSRKVFNSMKDR----NLSSWNSILSS 164
Query: 418 LISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVG 477
+G + + +L ME G + + +S G +A + M+ +G
Sbjct: 165 YTKLGYVDDAIGLLDEMEICGLKPDIVTWNSLLSGYASKGLSKDAIAVLKRMQIAGLKPS 224
Query: 478 DKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFV 537
SL++ G L K + + + Y L++ Y K + + V
Sbjct: 225 TSSISSLLQAVAEPGHL-KLGKAIHGYILRNQLWYDVYVETTLIDMYI-KTGYLPYARMV 282
Query: 538 HNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPP 583
+ + ++ W++ L+ L KDA +L+ M+ G P
Sbjct: 283 FDMMDAKNIVAWNS----LVSGLSYACLLKDAEALMIRMEKEGIKP 324
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.135 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 239,295,133
Number of Sequences: 539616
Number of extensions: 9819307
Number of successful extensions: 28261
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 163
Number of HSP's that attempted gapping in prelim test: 26279
Number of HSP's gapped (non-prelim): 1202
length of query: 671
length of database: 191,569,459
effective HSP length: 124
effective length of query: 547
effective length of database: 124,657,075
effective search space: 68187420025
effective search space used: 68187420025
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 65 (29.6 bits)