Query 042546
Match_columns 671
No_of_seqs 705 out of 3866
Neff 10.8
Searched_HMMs 46136
Date Fri Mar 29 07:14:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042546.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042546hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03077 Protein ECB2; Provisi 100.0 2.5E-75 5.5E-80 658.9 51.4 610 33-668 104-773 (857)
2 PLN03218 maturation of RBCL 1; 100.0 2E-70 4.3E-75 605.8 58.7 499 49-669 373-916 (1060)
3 PLN03077 Protein ECB2; Provisi 100.0 7.1E-71 1.5E-75 622.7 47.6 543 48-671 53-628 (857)
4 PLN03218 maturation of RBCL 1; 100.0 1.6E-67 3.4E-72 582.8 59.2 463 132-671 372-850 (1060)
5 PLN03081 pentatricopeptide (PP 100.0 6.4E-64 1.4E-68 552.8 54.2 485 133-668 93-610 (697)
6 PLN03081 pentatricopeptide (PP 100.0 6.5E-62 1.4E-66 536.9 45.0 450 74-612 83-558 (697)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 1.8E-24 3.9E-29 250.5 56.4 541 50-643 333-898 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 2.3E-22 5.1E-27 232.9 68.4 486 141-645 308-799 (899)
9 PRK11788 tetratricopeptide rep 99.9 2.5E-18 5.4E-23 178.3 37.7 314 260-585 30-353 (389)
10 PRK11788 tetratricopeptide rep 99.9 5.9E-18 1.3E-22 175.5 37.7 313 125-551 32-354 (389)
11 PRK11447 cellulose synthase su 99.8 8.5E-15 1.8E-19 170.7 56.2 220 412-642 465-697 (1157)
12 PRK11447 cellulose synthase su 99.8 9.8E-14 2.1E-18 161.9 62.3 340 308-662 276-700 (1157)
13 PRK09782 bacteriophage N4 rece 99.8 1.6E-13 3.4E-18 153.0 57.8 475 141-643 57-704 (987)
14 TIGR00990 3a0801s09 mitochondr 99.8 8.2E-14 1.8E-18 152.4 49.3 248 391-644 312-570 (615)
15 KOG4422 Uncharacterized conser 99.8 1.1E-13 2.4E-18 131.2 42.2 429 164-644 116-589 (625)
16 PRK15174 Vi polysaccharide exp 99.7 6.5E-14 1.4E-18 152.6 42.5 317 278-611 55-381 (656)
17 KOG4422 Uncharacterized conser 99.7 6.4E-13 1.4E-17 126.1 42.6 254 145-477 194-467 (625)
18 PRK10049 pgaA outer membrane p 99.7 6.7E-13 1.5E-17 147.9 50.6 408 141-653 28-464 (765)
19 TIGR00990 3a0801s09 mitochondr 99.7 1.2E-12 2.6E-17 143.2 49.9 416 141-611 140-571 (615)
20 PRK15174 Vi polysaccharide exp 99.7 3.2E-13 6.9E-18 147.2 44.3 253 279-579 124-381 (656)
21 PRK14574 hmsH outer membrane p 99.7 1.3E-11 2.8E-16 135.0 51.9 196 449-646 298-514 (822)
22 KOG4626 O-linked N-acetylgluco 99.7 2.3E-13 5E-18 134.8 33.8 377 134-633 123-507 (966)
23 KOG4626 O-linked N-acetylgluco 99.7 2.4E-13 5.2E-18 134.7 30.6 313 279-644 164-484 (966)
24 PRK10049 pgaA outer membrane p 99.6 4.3E-12 9.3E-17 141.5 42.3 379 169-661 20-455 (765)
25 PRK09782 bacteriophage N4 rece 99.6 4.8E-10 1E-14 125.5 55.7 226 406-642 507-737 (987)
26 KOG2002 TPR-containing nuclear 99.6 9.7E-10 2.1E-14 115.5 49.7 485 141-643 177-707 (1018)
27 PRK14574 hmsH outer membrane p 99.6 4.4E-10 9.6E-15 123.2 46.0 320 279-643 116-477 (822)
28 KOG4318 Bicoid mRNA stability 99.5 9.6E-11 2.1E-15 121.3 32.1 243 158-493 19-286 (1088)
29 PF13041 PPR_2: PPR repeat fam 99.4 1.9E-13 4.1E-18 93.8 6.3 50 162-211 1-50 (50)
30 PRK10747 putative protoheme IX 99.4 6.8E-10 1.5E-14 114.1 33.0 280 314-642 97-387 (398)
31 KOG2002 TPR-containing nuclear 99.4 4E-08 8.6E-13 103.7 44.9 77 143-221 251-329 (1018)
32 PF13041 PPR_2: PPR repeat fam 99.4 6E-13 1.3E-17 91.3 6.5 50 299-348 1-50 (50)
33 PF13429 TPR_15: Tetratricopep 99.4 4.1E-12 8.9E-17 124.7 14.4 224 413-643 49-275 (280)
34 KOG4318 Bicoid mRNA stability 99.4 1.9E-09 4.2E-14 111.9 33.1 500 94-642 18-591 (1088)
35 TIGR00540 hemY_coli hemY prote 99.4 2.1E-09 4.7E-14 111.1 34.2 284 312-642 95-396 (409)
36 KOG2076 RNA polymerase III tra 99.4 1.7E-07 3.7E-12 98.4 46.8 468 141-646 152-696 (895)
37 PRK10747 putative protoheme IX 99.4 6.4E-09 1.4E-13 107.0 36.6 254 279-576 132-387 (398)
38 TIGR00540 hemY_coli hemY prote 99.3 1.5E-08 3.3E-13 104.8 36.5 294 269-609 88-397 (409)
39 KOG0547 Translocase of outer m 99.3 6E-08 1.3E-12 94.6 36.4 230 419-657 337-578 (606)
40 KOG2076 RNA polymerase III tra 99.3 1.1E-07 2.5E-12 99.6 40.4 362 173-643 149-553 (895)
41 PF13429 TPR_15: Tetratricopep 99.3 2.9E-11 6.2E-16 118.7 13.5 252 279-577 22-275 (280)
42 COG2956 Predicted N-acetylgluc 99.3 4.4E-08 9.5E-13 90.7 31.4 290 314-644 48-346 (389)
43 KOG1155 Anaphase-promoting com 99.3 3.5E-07 7.6E-12 88.9 38.5 258 309-578 235-494 (559)
44 COG2956 Predicted N-acetylgluc 99.3 4.7E-08 1E-12 90.5 31.2 233 306-579 112-347 (389)
45 KOG2003 TPR repeat-containing 99.3 1.3E-08 2.8E-13 97.9 28.6 206 419-632 501-710 (840)
46 COG3071 HemY Uncharacterized e 99.3 5.9E-08 1.3E-12 92.7 32.6 283 314-643 97-388 (400)
47 KOG1915 Cell cycle control pro 99.3 2.9E-06 6.2E-11 82.8 45.3 429 141-656 86-546 (677)
48 KOG0495 HAT repeat protein [RN 99.2 4.4E-06 9.6E-11 84.8 48.2 317 279-644 530-879 (913)
49 KOG1126 DNA-binding cell divis 99.2 4.3E-09 9.3E-14 106.7 25.5 277 316-644 334-619 (638)
50 KOG2003 TPR repeat-containing 99.2 1.5E-07 3.2E-12 90.8 31.5 161 417-585 533-694 (840)
51 KOG1126 DNA-binding cell divis 99.2 2.1E-08 4.6E-13 101.7 25.5 195 301-540 421-617 (638)
52 KOG0495 HAT repeat protein [RN 99.1 1.4E-05 3E-10 81.3 47.9 361 268-645 411-782 (913)
53 TIGR02521 type_IV_pilW type IV 99.1 5.4E-08 1.2E-12 92.8 26.9 165 409-578 32-197 (234)
54 TIGR02521 type_IV_pilW type IV 99.1 5.1E-08 1.1E-12 92.9 26.2 198 441-643 29-230 (234)
55 COG3071 HemY Uncharacterized e 99.1 1.9E-06 4.1E-11 82.7 35.5 292 272-578 91-389 (400)
56 KOG1155 Anaphase-promoting com 99.1 1.4E-06 3.1E-11 84.8 33.7 212 444-662 331-553 (559)
57 PRK12370 invasion protein regu 99.1 9.6E-08 2.1E-12 102.8 29.3 190 410-610 340-534 (553)
58 KOG1915 Cell cycle control pro 99.1 1.8E-05 4E-10 77.4 45.5 433 141-647 154-627 (677)
59 KOG0547 Translocase of outer m 99.1 4.2E-06 9.1E-11 82.1 35.3 401 141-610 128-565 (606)
60 KOG2047 mRNA splicing factor [ 99.0 5.9E-05 1.3E-09 76.8 41.8 439 165-639 249-717 (835)
61 KOG1173 Anaphase-promoting com 99.0 9.5E-06 2.1E-10 81.3 35.7 245 409-662 279-535 (611)
62 KOG1840 Kinesin light chain [C 99.0 6.3E-07 1.4E-11 92.1 28.6 235 409-643 200-477 (508)
63 KOG1174 Anaphase-promoting com 98.9 5.9E-05 1.3E-09 72.7 36.1 316 305-668 198-523 (564)
64 PRK12370 invasion protein regu 98.9 3.4E-06 7.3E-11 91.0 31.3 211 420-644 316-534 (553)
65 KOG3616 Selective LIM binding 98.9 6.4E-06 1.4E-10 84.4 30.4 194 415-640 739-932 (1636)
66 PF12569 NARP1: NMDA receptor- 98.9 2.6E-05 5.6E-10 81.4 36.0 285 278-578 17-333 (517)
67 KOG1156 N-terminal acetyltrans 98.9 0.00014 3E-09 74.4 39.5 386 141-645 54-468 (700)
68 KOG2047 mRNA splicing factor [ 98.9 0.00018 3.9E-09 73.4 43.9 457 141-642 115-648 (835)
69 PF12569 NARP1: NMDA receptor- 98.9 2.7E-05 5.8E-10 81.3 35.2 288 309-610 12-333 (517)
70 KOG2376 Signal recognition par 98.8 0.0002 4.3E-09 72.5 40.1 160 480-644 341-519 (652)
71 KOG1840 Kinesin light chain [C 98.8 1.8E-06 3.8E-11 88.8 25.7 246 302-577 200-477 (508)
72 PF12854 PPR_1: PPR repeat 98.8 3.7E-09 8.1E-14 64.9 3.9 34 158-191 1-34 (34)
73 KOG1129 TPR repeat-containing 98.8 4.9E-07 1.1E-11 83.9 18.6 225 412-644 227-457 (478)
74 PF12854 PPR_1: PPR repeat 98.8 6.4E-09 1.4E-13 63.8 3.8 32 296-327 2-33 (34)
75 PRK11189 lipoprotein NlpI; Pro 98.8 3.9E-06 8.4E-11 82.6 25.1 215 421-644 39-264 (296)
76 KOG3785 Uncharacterized conser 98.8 8.7E-05 1.9E-09 70.0 31.8 443 142-619 36-497 (557)
77 KOG4162 Predicted calmodulin-b 98.8 0.00051 1.1E-08 71.8 39.7 357 279-643 337-781 (799)
78 KOG1129 TPR repeat-containing 98.7 2.8E-06 6E-11 79.0 19.8 229 305-578 227-457 (478)
79 cd05804 StaR_like StaR_like; a 98.7 9.6E-05 2.1E-09 75.6 33.2 304 301-644 6-335 (355)
80 PRK11189 lipoprotein NlpI; Pro 98.7 2.5E-05 5.5E-10 76.9 26.9 202 409-621 65-275 (296)
81 cd05804 StaR_like StaR_like; a 98.6 0.00041 8.9E-09 70.9 35.0 294 278-610 19-335 (355)
82 KOG1173 Anaphase-promoting com 98.6 0.00039 8.4E-09 70.1 32.3 265 278-592 257-529 (611)
83 KOG4162 Predicted calmodulin-b 98.6 0.0016 3.4E-08 68.4 39.3 362 297-663 319-768 (799)
84 KOG3617 WD40 and TPR repeat-co 98.6 0.0017 3.7E-08 68.3 37.8 372 141-641 741-1170(1416)
85 COG3063 PilF Tfp pilus assembl 98.6 7E-05 1.5E-09 66.8 23.6 197 411-612 38-237 (250)
86 KOG1070 rRNA processing protei 98.6 1.8E-05 3.8E-10 87.2 24.0 199 440-645 1455-1663(1710)
87 KOG3616 Selective LIM binding 98.6 0.00032 7E-09 72.4 31.4 256 279-610 746-1023(1636)
88 PF04733 Coatomer_E: Coatomer 98.5 2.4E-06 5.2E-11 82.8 15.1 222 413-650 40-270 (290)
89 COG3063 PilF Tfp pilus assembl 98.5 0.00011 2.3E-09 65.7 23.3 198 445-646 37-237 (250)
90 KOG3617 WD40 and TPR repeat-co 98.5 0.00011 2.3E-09 76.8 26.4 280 279-639 742-1058(1416)
91 KOG2376 Signal recognition par 98.5 0.0019 4.1E-08 65.7 33.9 378 141-576 92-517 (652)
92 PF04733 Coatomer_E: Coatomer 98.4 1.5E-05 3.2E-10 77.4 16.5 147 418-577 112-263 (290)
93 TIGR00756 PPR pentatricopeptid 98.4 4.3E-07 9.3E-12 56.9 3.6 35 165-199 1-35 (35)
94 KOG0985 Vesicle coat protein c 98.3 0.0078 1.7E-07 65.0 37.8 244 279-576 1062-1305(1666)
95 KOG1914 mRNA cleavage and poly 98.3 0.0048 1E-07 62.2 37.1 146 494-644 347-500 (656)
96 PRK04841 transcriptional regul 98.3 0.0015 3.3E-08 75.9 34.5 334 311-644 384-759 (903)
97 KOG4340 Uncharacterized conser 98.3 0.0028 6E-08 58.8 28.6 308 141-504 23-336 (459)
98 KOG1070 rRNA processing protei 98.3 0.00062 1.3E-08 75.6 27.1 213 335-585 1457-1669(1710)
99 KOG0985 Vesicle coat protein c 98.3 0.011 2.4E-07 63.9 44.5 463 143-644 658-1222(1666)
100 PRK04841 transcriptional regul 98.2 0.0087 1.9E-07 69.7 38.4 268 278-580 465-761 (903)
101 KOG4340 Uncharacterized conser 98.2 0.00073 1.6E-08 62.5 22.7 216 420-643 124-373 (459)
102 TIGR00756 PPR pentatricopeptid 98.2 1.6E-06 3.5E-11 54.2 4.1 33 303-335 2-34 (35)
103 PF13812 PPR_3: Pentatricopept 98.2 1.6E-06 3.5E-11 53.7 4.0 34 164-197 1-34 (34)
104 KOG1174 Anaphase-promoting com 98.2 0.0073 1.6E-07 58.8 32.8 268 366-643 189-465 (564)
105 TIGR03302 OM_YfiO outer membra 98.2 0.00032 6.9E-09 66.9 21.0 99 406-506 31-143 (235)
106 KOG1128 Uncharacterized conser 98.2 0.00097 2.1E-08 69.4 24.7 202 411-626 427-633 (777)
107 TIGR03302 OM_YfiO outer membra 98.2 0.00032 6.9E-09 66.8 20.6 185 440-644 30-231 (235)
108 KOG0548 Molecular co-chaperone 98.2 0.0051 1.1E-07 62.0 28.3 83 279-365 16-99 (539)
109 KOG1128 Uncharacterized conser 98.1 0.00015 3.3E-09 75.2 17.7 218 404-644 394-615 (777)
110 PF13812 PPR_3: Pentatricopept 98.1 3.5E-06 7.6E-11 52.2 3.9 33 302-334 2-34 (34)
111 COG4783 Putative Zn-dependent 98.1 0.014 3.1E-07 58.4 30.3 199 405-628 271-474 (484)
112 KOG3785 Uncharacterized conser 98.1 0.01 2.2E-07 56.6 35.4 57 171-227 29-85 (557)
113 COG4783 Putative Zn-dependent 98.1 0.0082 1.8E-07 60.0 27.5 150 416-590 314-464 (484)
114 PF01535 PPR: PPR repeat; Int 98.0 4.7E-06 1E-10 50.3 3.2 31 165-195 1-31 (31)
115 KOG1125 TPR repeat-containing 98.0 0.00028 6.1E-09 71.3 16.9 217 418-641 295-523 (579)
116 KOG1156 N-terminal acetyltrans 98.0 0.03 6.4E-07 58.0 41.1 396 133-577 80-509 (700)
117 PRK15179 Vi polysaccharide bio 98.0 0.0032 6.9E-08 68.7 24.9 135 477-619 85-225 (694)
118 PRK10370 formate-dependent nit 97.9 0.0016 3.4E-08 59.7 19.0 114 527-644 52-172 (198)
119 PF01535 PPR: PPR repeat; Int 97.9 1.1E-05 2.3E-10 48.7 3.3 31 302-332 1-31 (31)
120 KOG3081 Vesicle coat complex C 97.9 0.0082 1.8E-07 55.1 22.5 102 525-631 148-256 (299)
121 PRK14720 transcript cleavage f 97.9 0.0045 9.7E-08 68.4 24.9 222 298-561 28-268 (906)
122 PF09295 ChAPs: ChAPs (Chs5p-A 97.9 0.00036 7.8E-09 70.1 15.3 122 517-645 172-297 (395)
123 KOG2053 Mitochondrial inherita 97.9 0.06 1.3E-06 58.0 46.1 221 117-366 32-256 (932)
124 PLN02789 farnesyltranstransfer 97.8 0.0078 1.7E-07 59.4 23.1 242 410-659 39-299 (320)
125 PF09976 TPR_21: Tetratricopep 97.8 0.0012 2.6E-08 57.2 15.2 125 515-641 13-143 (145)
126 KOG1125 TPR repeat-containing 97.8 0.021 4.6E-07 58.3 25.3 212 278-503 298-523 (579)
127 PRK15359 type III secretion sy 97.8 0.00086 1.9E-08 57.9 13.9 92 413-506 29-120 (144)
128 PRK10370 formate-dependent nit 97.8 0.0019 4.2E-08 59.0 16.6 116 423-542 54-172 (198)
129 PLN02789 farnesyltranstransfer 97.8 0.053 1.1E-06 53.6 29.2 163 410-578 73-249 (320)
130 PF10037 MRP-S27: Mitochondria 97.7 0.00046 1E-08 69.6 13.0 121 404-525 62-184 (429)
131 COG5010 TadD Flp pilus assembl 97.7 0.0077 1.7E-07 55.3 19.5 126 448-578 71-196 (257)
132 COG5010 TadD Flp pilus assembl 97.7 0.014 3.1E-07 53.6 21.0 159 412-576 70-228 (257)
133 KOG3081 Vesicle coat complex C 97.7 0.042 9.2E-07 50.6 25.7 116 416-542 116-235 (299)
134 KOG0624 dsRNA-activated protei 97.7 0.054 1.2E-06 51.7 32.4 201 279-514 52-256 (504)
135 PF10037 MRP-S27: Mitochondria 97.7 0.00075 1.6E-08 68.2 13.7 132 358-491 50-186 (429)
136 PF08579 RPM2: Mitochondrial r 97.7 0.00067 1.5E-08 53.4 10.2 80 305-384 29-117 (120)
137 PRK14720 transcript cleavage f 97.7 0.034 7.3E-07 61.7 26.7 235 162-454 29-268 (906)
138 PRK15359 type III secretion sy 97.7 0.0035 7.7E-08 54.1 15.9 100 446-551 27-126 (144)
139 PF09295 ChAPs: ChAPs (Chs5p-A 97.6 0.0019 4.1E-08 65.1 15.9 125 409-541 170-295 (395)
140 PF06239 ECSIT: Evolutionarily 97.6 0.0013 2.9E-08 58.6 12.6 98 285-385 34-152 (228)
141 PF08579 RPM2: Mitochondrial r 97.6 0.0015 3.2E-08 51.5 11.3 79 412-490 29-116 (120)
142 PRK15179 Vi polysaccharide bio 97.6 0.04 8.7E-07 60.4 26.6 183 332-563 82-268 (694)
143 PF06239 ECSIT: Evolutionarily 97.6 0.002 4.3E-08 57.5 13.6 100 441-541 45-166 (228)
144 TIGR02552 LcrH_SycD type III s 97.6 0.0044 9.6E-08 53.0 15.3 92 447-541 21-112 (135)
145 TIGR02552 LcrH_SycD type III s 97.6 0.0032 6.9E-08 53.8 14.2 105 409-518 18-122 (135)
146 KOG3060 Uncharacterized conser 97.5 0.0084 1.8E-07 54.6 16.7 184 456-644 25-219 (289)
147 PF09976 TPR_21: Tetratricopep 97.5 0.011 2.4E-07 51.2 16.6 124 411-539 15-143 (145)
148 KOG1127 TPR repeat-containing 97.3 0.23 4.9E-06 54.5 26.8 216 422-645 472-700 (1238)
149 PF14559 TPR_19: Tetratricopep 97.3 0.0012 2.6E-08 48.5 7.3 65 593-657 2-66 (68)
150 KOG1127 TPR repeat-containing 97.3 0.41 8.9E-06 52.5 34.8 442 141-643 471-950 (1238)
151 cd00189 TPR Tetratricopeptide 97.2 0.0058 1.3E-07 47.9 11.3 92 412-505 4-95 (100)
152 PF05843 Suf: Suppressor of fo 97.2 0.0065 1.4E-07 59.1 13.2 129 410-542 3-135 (280)
153 TIGR02795 tol_pal_ybgF tol-pal 97.2 0.01 2.3E-07 49.2 12.6 97 517-615 5-109 (119)
154 PF05843 Suf: Suppressor of fo 97.1 0.0096 2.1E-07 57.9 13.6 131 444-579 2-136 (280)
155 TIGR02795 tol_pal_ybgF tol-pal 97.0 0.031 6.6E-07 46.3 14.0 96 411-506 5-104 (119)
156 PF12921 ATP13: Mitochondrial 97.0 0.014 3E-07 48.6 11.2 55 508-562 46-100 (126)
157 KOG0553 TPR repeat-containing 97.0 0.006 1.3E-07 57.2 9.8 87 560-648 91-181 (304)
158 cd00189 TPR Tetratricopeptide 96.9 0.016 3.4E-07 45.3 11.2 90 448-540 5-94 (100)
159 KOG3060 Uncharacterized conser 96.9 0.34 7.4E-06 44.6 23.2 83 491-577 99-181 (289)
160 KOG1538 Uncharacterized conser 96.9 0.17 3.7E-06 52.5 19.9 77 514-602 747-824 (1081)
161 KOG1914 mRNA cleavage and poly 96.8 0.79 1.7E-05 47.0 41.1 205 425-633 310-527 (656)
162 PF04840 Vps16_C: Vps16, C-ter 96.8 0.64 1.4E-05 45.9 26.4 108 480-606 179-286 (319)
163 PRK15363 pathogenicity island 96.7 0.13 2.9E-06 44.0 15.1 90 555-646 40-133 (157)
164 PF14559 TPR_19: Tetratricopep 96.7 0.0075 1.6E-07 44.1 6.8 63 419-484 2-64 (68)
165 PF13432 TPR_16: Tetratricopep 96.7 0.0074 1.6E-07 43.7 6.7 56 590-645 5-60 (65)
166 PLN03088 SGT1, suppressor of 96.7 0.041 8.9E-07 55.7 14.3 100 416-520 10-109 (356)
167 PF14938 SNAP: Soluble NSF att 96.7 0.28 6.2E-06 47.9 19.6 202 410-643 37-264 (282)
168 PF12688 TPR_5: Tetratrico pep 96.6 0.073 1.6E-06 43.8 12.6 83 559-641 10-100 (120)
169 PRK02603 photosystem I assembl 96.6 0.14 3E-06 45.8 15.8 91 409-500 36-128 (172)
170 PF07079 DUF1347: Protein of u 96.6 0.93 2E-05 45.5 42.1 458 141-645 19-524 (549)
171 PF04840 Vps16_C: Vps16, C-ter 96.6 0.89 1.9E-05 44.9 28.1 111 515-642 178-288 (319)
172 PRK10866 outer membrane biogen 96.5 0.65 1.4E-05 44.0 20.5 175 450-642 39-238 (243)
173 PLN03088 SGT1, suppressor of 96.5 0.03 6.5E-07 56.7 12.2 94 522-619 10-107 (356)
174 COG4700 Uncharacterized protei 96.5 0.41 9E-06 41.8 16.8 126 476-606 87-217 (251)
175 KOG2796 Uncharacterized conser 96.5 0.15 3.3E-06 46.9 14.8 163 280-485 164-326 (366)
176 PF12895 Apc3: Anaphase-promot 96.5 0.0051 1.1E-07 47.4 5.0 19 520-538 31-49 (84)
177 PF12895 Apc3: Anaphase-promot 96.5 0.0055 1.2E-07 47.2 4.9 47 422-468 3-50 (84)
178 PF14938 SNAP: Soluble NSF att 96.4 0.6 1.3E-05 45.6 20.3 33 316-363 30-62 (282)
179 PRK15363 pathogenicity island 96.4 0.52 1.1E-05 40.5 17.0 93 412-506 39-131 (157)
180 PRK02603 photosystem I assembl 96.4 0.23 5.1E-06 44.4 15.9 91 442-535 34-127 (172)
181 PRK10153 DNA-binding transcrip 96.3 0.39 8.5E-06 51.0 19.3 63 513-578 419-481 (517)
182 KOG0548 Molecular co-chaperone 96.2 1.7 3.7E-05 44.6 33.5 166 414-597 304-471 (539)
183 CHL00033 ycf3 photosystem I as 96.2 0.14 2.9E-06 45.7 13.4 63 410-472 37-101 (168)
184 COG4700 Uncharacterized protei 96.2 0.67 1.5E-05 40.5 16.4 134 508-643 83-220 (251)
185 PRK10153 DNA-binding transcrip 96.2 0.9 1.9E-05 48.3 21.2 63 477-542 419-481 (517)
186 PF13371 TPR_9: Tetratricopept 96.2 0.029 6.2E-07 41.7 7.5 66 590-655 3-68 (73)
187 PRK10866 outer membrane biogen 96.2 1.2 2.7E-05 42.2 20.8 74 414-489 38-115 (243)
188 CHL00033 ycf3 photosystem I as 96.1 0.092 2E-06 46.8 11.7 92 551-642 36-139 (168)
189 PF12688 TPR_5: Tetratrico pep 96.1 0.48 1E-05 39.0 14.6 87 451-540 9-101 (120)
190 PF13432 TPR_16: Tetratricopep 96.1 0.031 6.7E-07 40.4 7.0 56 416-472 5-60 (65)
191 KOG2053 Mitochondrial inherita 96.1 3 6.5E-05 45.7 45.6 80 141-223 22-101 (932)
192 KOG2041 WD40 repeat protein [G 96.0 2.5 5.5E-05 44.7 24.9 239 280-543 678-952 (1189)
193 PF12921 ATP13: Mitochondrial 96.0 0.11 2.5E-06 43.1 10.8 99 407-525 1-99 (126)
194 KOG3941 Intermediate in Toll s 96.0 0.12 2.5E-06 48.1 11.5 91 298-388 64-175 (406)
195 COG4105 ComL DNA uptake lipopr 96.0 1.4 3E-05 41.1 18.9 59 589-647 174-235 (254)
196 KOG0624 dsRNA-activated protei 95.7 2.1 4.6E-05 41.3 33.0 168 405-579 186-370 (504)
197 COG4235 Cytochrome c biogenesi 95.7 0.18 4E-06 47.8 11.9 96 549-646 155-257 (287)
198 KOG1538 Uncharacterized conser 95.6 1.9 4.2E-05 45.1 19.5 89 477-578 746-845 (1081)
199 PF03704 BTAD: Bacterial trans 95.5 0.36 7.7E-06 41.7 12.7 56 589-644 69-124 (146)
200 KOG0553 TPR repeat-containing 95.5 0.2 4.3E-06 47.3 11.3 101 418-523 91-191 (304)
201 PF13414 TPR_11: TPR repeat; P 95.5 0.081 1.8E-06 38.7 7.3 62 409-471 4-66 (69)
202 KOG2796 Uncharacterized conser 95.4 2.4 5.1E-05 39.5 18.9 129 412-542 181-314 (366)
203 PF03704 BTAD: Bacterial trans 95.2 0.15 3.2E-06 44.2 9.2 69 411-480 65-138 (146)
204 smart00299 CLH Clathrin heavy 95.2 1 2.3E-05 38.5 14.3 127 411-562 10-137 (140)
205 PF10300 DUF3808: Protein of u 95.1 0.95 2E-05 47.7 16.4 116 527-645 246-376 (468)
206 KOG3941 Intermediate in Toll s 95.1 0.5 1.1E-05 44.1 12.3 118 405-542 64-187 (406)
207 PRK10803 tol-pal system protei 95.1 0.44 9.6E-06 45.6 12.7 92 411-506 146-245 (263)
208 KOG1920 IkappaB kinase complex 95.1 8.1 0.00017 44.0 25.7 156 421-610 893-1054(1265)
209 PF13414 TPR_11: TPR repeat; P 95.1 0.13 2.9E-06 37.5 7.3 63 443-506 3-66 (69)
210 PF13371 TPR_9: Tetratricopept 95.1 0.18 3.9E-06 37.3 8.1 56 416-472 3-58 (73)
211 PF07035 Mic1: Colon cancer-as 95.0 2.2 4.7E-05 37.4 15.4 133 322-470 15-147 (167)
212 PF13525 YfiO: Outer membrane 95.0 2.2 4.8E-05 39.3 16.8 48 589-636 148-198 (203)
213 KOG2280 Vacuolar assembly/sort 94.8 7.1 0.00015 42.1 29.7 101 330-433 426-532 (829)
214 PRK10803 tol-pal system protei 94.6 0.69 1.5E-05 44.3 12.6 98 444-543 144-246 (263)
215 PF08631 SPO22: Meiosis protei 94.4 5.4 0.00012 38.8 25.3 218 419-641 4-271 (278)
216 PF13281 DUF4071: Domain of un 94.4 6.4 0.00014 39.5 23.3 93 412-504 145-252 (374)
217 KOG2280 Vacuolar assembly/sort 94.3 9.4 0.0002 41.2 28.2 126 500-641 670-795 (829)
218 PF10300 DUF3808: Protein of u 94.2 3.5 7.6E-05 43.5 18.0 118 421-542 246-375 (468)
219 PF13170 DUF4003: Protein of u 94.2 2.6 5.7E-05 41.1 15.9 49 317-365 78-132 (297)
220 COG3118 Thioredoxin domain-con 94.0 5.9 0.00013 37.8 17.7 143 417-564 143-286 (304)
221 PF13424 TPR_12: Tetratricopep 94.0 0.3 6.5E-06 36.7 7.2 61 516-576 7-72 (78)
222 PF04053 Coatomer_WDAD: Coatom 93.9 2.7 5.8E-05 43.7 16.0 167 265-503 261-427 (443)
223 PF09205 DUF1955: Domain of un 93.7 3.5 7.5E-05 34.0 14.0 139 420-582 14-152 (161)
224 PF13281 DUF4071: Domain of un 93.7 8.7 0.00019 38.6 19.8 76 448-524 146-227 (374)
225 PF13424 TPR_12: Tetratricopep 93.5 0.31 6.8E-06 36.6 6.5 61 410-470 7-73 (78)
226 PF13525 YfiO: Outer membrane 93.4 6.3 0.00014 36.2 19.8 159 414-585 11-174 (203)
227 PF09205 DUF1955: Domain of un 93.4 3.9 8.4E-05 33.7 14.6 61 412-473 90-150 (161)
228 KOG1920 IkappaB kinase complex 93.2 19 0.00041 41.2 22.6 132 481-641 911-1051(1265)
229 COG4235 Cytochrome c biogenesi 93.0 6.8 0.00015 37.5 15.7 30 477-506 155-184 (287)
230 COG5107 RNA14 Pre-mRNA 3'-end 92.9 12 0.00025 38.0 31.1 130 515-647 398-533 (660)
231 PLN03098 LPA1 LOW PSII ACCUMUL 92.7 2.2 4.7E-05 43.5 12.6 66 405-472 72-141 (453)
232 PF04184 ST7: ST7 protein; In 92.6 5 0.00011 41.2 14.9 60 482-541 263-322 (539)
233 PRK15331 chaperone protein Sic 92.4 4.9 0.00011 34.9 12.7 84 278-364 50-133 (165)
234 smart00299 CLH Clathrin heavy 92.4 6.3 0.00014 33.6 15.3 43 305-348 11-53 (140)
235 PLN03098 LPA1 LOW PSII ACCUMUL 92.1 2.1 4.5E-05 43.6 11.6 65 475-542 72-140 (453)
236 PF09613 HrpB1_HrpK: Bacterial 92.0 5 0.00011 34.7 12.3 110 489-603 21-130 (160)
237 PF04053 Coatomer_WDAD: Coatom 91.9 3.7 8E-05 42.7 13.8 130 411-575 298-427 (443)
238 PRK11906 transcriptional regul 91.9 10 0.00022 39.0 16.1 145 424-575 274-432 (458)
239 KOG1130 Predicted G-alpha GTPa 91.8 3.9 8.4E-05 40.6 12.6 51 310-361 26-80 (639)
240 PF08631 SPO22: Meiosis protei 91.7 14 0.0003 36.0 27.8 101 410-514 86-192 (278)
241 PF13428 TPR_14: Tetratricopep 91.5 0.48 1E-05 30.8 4.6 38 618-655 3-40 (44)
242 PF13170 DUF4003: Protein of u 91.3 15 0.00033 35.9 22.5 93 425-520 120-223 (297)
243 PF13431 TPR_17: Tetratricopep 91.1 0.25 5.5E-06 30.0 2.7 33 605-637 2-34 (34)
244 PF07035 Mic1: Colon cancer-as 91.1 10 0.00022 33.3 14.9 100 430-540 16-115 (167)
245 COG3629 DnrI DNA-binding trans 91.0 2.9 6.3E-05 40.0 10.9 77 410-487 155-236 (280)
246 COG1729 Uncharacterized protei 90.7 4.2 9.1E-05 38.3 11.4 99 445-544 144-245 (262)
247 KOG2114 Vacuolar assembly/sort 90.7 12 0.00026 40.9 15.9 177 411-609 337-517 (933)
248 PRK11906 transcriptional regul 90.6 21 0.00045 36.8 16.9 115 422-540 318-433 (458)
249 PRK15331 chaperone protein Sic 90.2 2.8 6.1E-05 36.3 9.1 86 419-506 48-133 (165)
250 KOG0543 FKBP-type peptidyl-pro 90.2 11 0.00024 37.7 14.2 94 410-506 259-354 (397)
251 KOG0543 FKBP-type peptidyl-pro 89.8 6.4 0.00014 39.3 12.3 136 485-644 215-354 (397)
252 COG1729 Uncharacterized protei 89.7 9.4 0.0002 36.1 12.8 57 590-646 186-245 (262)
253 KOG1130 Predicted G-alpha GTPa 89.2 9.5 0.00021 38.0 12.8 132 410-541 197-342 (639)
254 COG3629 DnrI DNA-binding trans 89.1 1.7 3.7E-05 41.6 7.6 56 589-644 160-215 (280)
255 KOG4570 Uncharacterized conser 88.9 5.3 0.00011 38.3 10.5 49 493-542 115-163 (418)
256 PF10602 RPN7: 26S proteasome 88.6 16 0.00035 32.6 13.3 61 410-470 38-100 (177)
257 PF13176 TPR_7: Tetratricopept 88.2 0.89 1.9E-05 28.0 3.6 26 618-643 1-26 (36)
258 PF04097 Nic96: Nup93/Nic96; 88.2 42 0.00092 36.9 18.7 218 266-506 114-355 (613)
259 PF00637 Clathrin: Region in C 87.7 0.012 2.6E-07 50.8 -7.1 129 413-565 12-140 (143)
260 PRK09687 putative lyase; Provi 87.7 29 0.00062 33.8 29.5 224 298-542 34-262 (280)
261 PF10602 RPN7: 26S proteasome 87.5 11 0.00023 33.7 11.5 96 444-542 37-141 (177)
262 PF13428 TPR_14: Tetratricopep 87.3 2.4 5.3E-05 27.4 5.4 27 411-437 4-30 (44)
263 COG3898 Uncharacterized membra 86.7 36 0.00079 34.0 27.5 90 419-513 131-223 (531)
264 PF13512 TPR_18: Tetratricopep 86.6 19 0.00041 30.6 11.5 53 526-578 22-75 (142)
265 COG3947 Response regulator con 86.5 31 0.00067 33.0 14.5 56 589-644 286-341 (361)
266 KOG2041 WD40 repeat protein [G 86.3 53 0.0011 35.5 29.0 56 298-362 849-904 (1189)
267 KOG1941 Acetylcholine receptor 86.1 37 0.00081 33.5 15.8 198 444-641 44-271 (518)
268 COG3898 Uncharacterized membra 85.7 41 0.00089 33.6 28.6 258 277-585 132-398 (531)
269 KOG2610 Uncharacterized conser 85.7 14 0.00031 35.8 11.5 151 489-645 114-277 (491)
270 PF13929 mRNA_stabil: mRNA sta 85.6 35 0.00076 32.8 22.2 119 349-467 141-262 (292)
271 COG4649 Uncharacterized protei 85.4 25 0.00053 30.8 14.0 84 561-644 105-195 (221)
272 KOG2114 Vacuolar assembly/sort 85.1 68 0.0015 35.6 24.7 137 141-292 381-517 (933)
273 PF13512 TPR_18: Tetratricopep 84.8 23 0.0005 30.0 11.8 75 418-492 20-96 (142)
274 COG1747 Uncharacterized N-term 84.6 54 0.0012 34.1 21.4 178 372-560 67-249 (711)
275 KOG0550 Molecular chaperone (D 84.5 49 0.0011 33.4 17.1 147 488-643 179-348 (486)
276 KOG4555 TPR repeat-containing 84.3 22 0.00048 29.4 10.4 87 524-612 53-145 (175)
277 PF13176 TPR_7: Tetratricopept 84.1 2.6 5.7E-05 25.9 4.2 23 446-468 2-24 (36)
278 KOG2610 Uncharacterized conser 83.7 46 0.00099 32.5 16.3 37 348-385 115-151 (491)
279 COG0457 NrfG FOG: TPR repeat [ 82.4 39 0.00085 30.9 29.3 217 422-643 37-263 (291)
280 COG4785 NlpI Lipoprotein NlpI, 82.3 24 0.00051 32.2 10.7 87 142-232 79-167 (297)
281 PF02284 COX5A: Cytochrome c o 82.3 16 0.00034 28.8 8.4 60 496-558 28-87 (108)
282 COG3118 Thioredoxin domain-con 82.2 49 0.0011 31.8 17.2 52 453-505 144-195 (304)
283 COG4649 Uncharacterized protei 81.5 37 0.00079 29.8 14.2 70 300-370 58-128 (221)
284 KOG4555 TPR repeat-containing 81.3 30 0.00065 28.7 10.6 89 417-506 52-143 (175)
285 TIGR02561 HrpB1_HrpK type III 81.2 34 0.00073 29.2 11.4 50 491-542 23-72 (153)
286 PF04097 Nic96: Nup93/Nic96; 80.5 98 0.0021 34.2 17.5 218 304-542 114-355 (613)
287 TIGR02508 type_III_yscG type I 79.6 20 0.00043 28.1 8.1 56 559-618 48-104 (115)
288 KOG4570 Uncharacterized conser 79.4 20 0.00044 34.5 9.8 107 472-581 58-166 (418)
289 cd00923 Cyt_c_Oxidase_Va Cytoc 79.1 19 0.00042 28.0 7.8 60 495-557 24-83 (103)
290 COG0457 NrfG FOG: TPR repeat [ 78.9 52 0.0011 30.0 26.5 199 409-613 60-267 (291)
291 KOG2297 Predicted translation 78.9 64 0.0014 31.1 20.0 20 479-498 322-341 (412)
292 PF02284 COX5A: Cytochrome c o 77.6 33 0.00071 27.1 9.7 52 385-436 22-73 (108)
293 PF04184 ST7: ST7 protein; In 77.0 99 0.0022 32.3 17.4 63 515-577 260-322 (539)
294 cd00923 Cyt_c_Oxidase_Va Cytoc 76.9 33 0.00072 26.7 9.2 48 388-435 22-69 (103)
295 PF09613 HrpB1_HrpK: Bacterial 76.4 51 0.0011 28.6 12.7 50 419-472 21-73 (160)
296 KOG2063 Vacuolar assembly/sort 76.3 1.5E+02 0.0032 33.9 18.2 27 338-364 506-532 (877)
297 KOG4279 Serine/threonine prote 75.3 94 0.002 34.0 14.2 201 391-622 181-406 (1226)
298 COG4105 ComL DNA uptake lipopr 75.1 75 0.0016 30.0 21.2 79 410-489 37-117 (254)
299 PF13374 TPR_10: Tetratricopep 74.2 8.6 0.00019 24.1 4.5 27 444-470 3-29 (42)
300 KOG1585 Protein required for f 73.6 80 0.0017 29.6 16.3 205 410-641 33-252 (308)
301 PF07721 TPR_4: Tetratricopept 73.2 6 0.00013 22.1 3.0 23 619-641 4-26 (26)
302 COG3947 Response regulator con 73.0 92 0.002 30.0 15.6 71 446-517 282-356 (361)
303 PF13431 TPR_17: Tetratricopep 73.0 6.4 0.00014 23.8 3.3 23 441-463 11-33 (34)
304 COG5107 RNA14 Pre-mRNA 3'-end 72.7 1.2E+02 0.0026 31.2 32.0 108 551-660 398-509 (660)
305 PF10345 Cohesin_load: Cohesin 72.7 1.6E+02 0.0034 32.6 23.8 63 278-340 374-451 (608)
306 PF13374 TPR_10: Tetratricopep 72.5 8.9 0.00019 24.0 4.3 29 164-192 2-30 (42)
307 KOG1258 mRNA processing protei 72.4 1.4E+02 0.003 31.9 31.5 427 163-669 44-497 (577)
308 PF02259 FAT: FAT domain; Int 72.0 1.1E+02 0.0025 30.6 22.8 60 551-610 147-212 (352)
309 PF07719 TPR_2: Tetratricopept 71.7 9.6 0.00021 22.5 4.0 28 617-644 2-29 (34)
310 PF00515 TPR_1: Tetratricopept 71.5 9.3 0.0002 22.7 3.9 28 617-644 2-29 (34)
311 PF13762 MNE1: Mitochondrial s 71.1 66 0.0014 27.5 11.7 81 481-562 42-127 (145)
312 KOG0276 Vesicle coat complex C 71.1 97 0.0021 33.0 12.9 98 455-575 649-746 (794)
313 PF11207 DUF2989: Protein of u 70.8 45 0.00098 30.2 9.4 71 426-497 124-197 (203)
314 PF00515 TPR_1: Tetratricopept 70.4 14 0.00029 22.0 4.5 25 446-470 4-28 (34)
315 COG2178 Predicted RNA-binding 70.3 75 0.0016 28.5 10.4 105 495-610 20-149 (204)
316 PF13762 MNE1: Mitochondrial s 70.3 68 0.0015 27.4 11.2 90 400-489 29-126 (145)
317 PHA02875 ankyrin repeat protei 69.6 1.4E+02 0.0031 30.9 15.4 204 279-515 13-231 (413)
318 COG5159 RPN6 26S proteasome re 67.5 1.2E+02 0.0026 29.1 17.5 51 170-220 9-66 (421)
319 TIGR02508 type_III_yscG type I 66.7 62 0.0013 25.5 8.5 49 419-473 50-98 (115)
320 PF00637 Clathrin: Region in C 65.9 2.1 4.6E-05 36.7 0.2 128 484-631 13-140 (143)
321 PF11848 DUF3368: Domain of un 65.8 22 0.00047 23.6 5.0 38 171-208 9-46 (48)
322 KOG0276 Vesicle coat complex C 65.3 77 0.0017 33.7 10.9 45 313-363 649-693 (794)
323 PF13181 TPR_8: Tetratricopept 64.9 15 0.00032 21.8 3.9 28 617-644 2-29 (34)
324 PF07575 Nucleopor_Nup85: Nup8 64.5 2.2E+02 0.0048 31.1 15.8 27 162-189 147-173 (566)
325 PF07719 TPR_2: Tetratricopept 64.1 21 0.00046 20.9 4.5 22 449-470 7-28 (34)
326 PF13934 ELYS: Nuclear pore co 64.0 75 0.0016 29.7 10.1 21 556-576 114-134 (226)
327 PRK15180 Vi polysaccharide bio 63.8 52 0.0011 33.8 9.2 120 454-579 300-420 (831)
328 TIGR02561 HrpB1_HrpK type III 63.8 95 0.0021 26.6 12.0 66 313-385 22-90 (153)
329 KOG2297 Predicted translation 63.5 1.5E+02 0.0032 28.8 19.7 20 551-570 322-341 (412)
330 KOG2063 Vacuolar assembly/sort 63.0 2.8E+02 0.0061 31.8 21.1 115 411-526 507-638 (877)
331 PF14689 SPOB_a: Sensor_kinase 62.8 12 0.00026 26.6 3.5 49 598-647 6-54 (62)
332 COG4455 ImpE Protein of avirul 62.0 30 0.00065 31.6 6.5 71 553-625 4-81 (273)
333 KOG2066 Vacuolar assembly/sort 61.8 2.6E+02 0.0057 31.0 28.4 73 141-217 369-441 (846)
334 KOG4234 TPR repeat-containing 61.6 95 0.0021 28.1 9.3 87 523-613 104-199 (271)
335 PF13174 TPR_6: Tetratricopept 61.6 13 0.00029 21.7 3.2 25 620-644 4-28 (33)
336 PRK10564 maltose regulon perip 60.5 24 0.00051 34.1 6.0 47 546-592 252-299 (303)
337 PF13929 mRNA_stabil: mRNA sta 60.1 1.7E+02 0.0037 28.3 17.9 118 422-539 142-263 (292)
338 cd00280 TRFH Telomeric Repeat 59.9 1.3E+02 0.0028 26.9 9.7 49 281-329 85-139 (200)
339 KOG0550 Molecular chaperone (D 57.8 2.2E+02 0.0049 29.0 20.5 157 416-582 177-353 (486)
340 KOG0991 Replication factor C, 56.7 1.7E+02 0.0037 27.3 13.3 126 450-585 137-273 (333)
341 PF13181 TPR_8: Tetratricopept 56.3 35 0.00075 20.1 4.4 26 445-470 3-28 (34)
342 PF11663 Toxin_YhaV: Toxin wit 55.8 12 0.00026 31.1 2.8 31 141-174 108-138 (140)
343 PRK14956 DNA polymerase III su 55.4 1.8E+02 0.004 30.7 11.9 95 256-373 191-285 (484)
344 KOG1585 Protein required for f 55.3 1.9E+02 0.004 27.3 17.5 60 302-361 92-155 (308)
345 KOG1550 Extracellular protein 55.2 3.1E+02 0.0067 29.9 21.8 156 418-582 259-429 (552)
346 PF11846 DUF3366: Domain of un 54.6 63 0.0014 29.3 7.8 32 546-577 140-171 (193)
347 TIGR03504 FimV_Cterm FimV C-te 54.0 26 0.00056 22.8 3.6 24 449-472 5-28 (44)
348 COG4455 ImpE Protein of avirul 53.8 99 0.0021 28.4 8.3 55 449-504 7-61 (273)
349 COG2976 Uncharacterized protei 53.6 1.7E+02 0.0038 26.4 13.4 84 558-645 97-188 (207)
350 TIGR03504 FimV_Cterm FimV C-te 53.4 29 0.00064 22.5 3.8 24 342-365 5-28 (44)
351 COG2976 Uncharacterized protei 53.1 1.8E+02 0.0038 26.4 14.3 87 522-612 97-189 (207)
352 PF11663 Toxin_YhaV: Toxin wit 52.7 15 0.00032 30.6 2.8 31 420-452 107-137 (140)
353 PF07163 Pex26: Pex26 protein; 50.7 2.1E+02 0.0046 27.5 10.2 87 450-537 90-181 (309)
354 PF11848 DUF3368: Domain of un 50.6 64 0.0014 21.4 5.2 31 420-450 14-44 (48)
355 KOG2062 26S proteasome regulat 50.5 3.9E+02 0.0085 29.6 30.3 42 134-176 66-107 (929)
356 KOG4648 Uncharacterized conser 49.7 1.1E+02 0.0025 30.0 8.6 53 451-505 105-158 (536)
357 KOG4077 Cytochrome c oxidase, 49.3 1.2E+02 0.0026 25.1 7.3 45 498-543 69-113 (149)
358 PF14689 SPOB_a: Sensor_kinase 49.3 42 0.00091 23.8 4.5 30 300-329 22-51 (62)
359 PF10579 Rapsyn_N: Rapsyn N-te 48.6 56 0.0012 24.4 5.0 46 526-571 18-64 (80)
360 PF08311 Mad3_BUB1_I: Mad3/BUB 47.9 71 0.0015 26.6 6.4 41 600-640 81-123 (126)
361 PF10366 Vps39_1: Vacuolar sor 46.6 1.5E+02 0.0033 23.8 8.9 27 445-471 41-67 (108)
362 KOG1550 Extracellular protein 46.4 4.2E+02 0.0092 28.8 24.3 275 281-611 228-538 (552)
363 KOG3364 Membrane protein invol 46.3 64 0.0014 27.1 5.5 68 597-664 50-123 (149)
364 PF07079 DUF1347: Protein of u 46.2 3.6E+02 0.0079 28.0 39.6 383 141-576 92-521 (549)
365 PF10366 Vps39_1: Vacuolar sor 46.1 1.6E+02 0.0034 23.8 8.3 27 338-364 41-67 (108)
366 PF07163 Pex26: Pex26 protein; 45.7 2.9E+02 0.0062 26.7 10.7 58 308-365 90-147 (309)
367 PF14853 Fis1_TPR_C: Fis1 C-te 45.6 55 0.0012 22.3 4.3 36 622-657 7-42 (53)
368 PF10579 Rapsyn_N: Rapsyn N-te 45.4 71 0.0015 23.9 5.1 47 313-359 18-66 (80)
369 COG5187 RPN7 26S proteasome re 45.4 2.9E+02 0.0063 26.7 11.9 105 263-367 77-186 (412)
370 smart00386 HAT HAT (Half-A-TPR 45.2 44 0.00096 19.1 3.7 28 596-623 1-28 (33)
371 PF11846 DUF3366: Domain of un 44.9 1E+02 0.0022 27.9 7.6 33 509-541 139-171 (193)
372 KOG1586 Protein required for f 44.7 2.7E+02 0.0059 26.1 16.1 18 525-542 165-182 (288)
373 PRK10564 maltose regulon perip 44.2 42 0.00091 32.5 4.9 49 159-207 251-300 (303)
374 PRK09687 putative lyase; Provi 44.1 3.1E+02 0.0068 26.6 30.6 170 298-487 102-276 (280)
375 PF02259 FAT: FAT domain; Int 43.1 3.5E+02 0.0077 27.0 23.3 65 477-542 145-212 (352)
376 PLN03025 replication factor C 42.2 3.6E+02 0.0078 26.8 15.2 81 254-335 167-258 (319)
377 PF01347 Vitellogenin_N: Lipop 42.2 5.2E+02 0.011 28.6 16.8 224 426-652 322-576 (618)
378 PRK14970 DNA polymerase III su 41.3 3.3E+02 0.0071 27.7 11.5 40 253-292 175-214 (367)
379 PF11207 DUF2989: Protein of u 41.1 2.8E+02 0.0061 25.3 14.9 75 280-356 121-198 (203)
380 PF09454 Vps23_core: Vps23 cor 40.4 87 0.0019 22.5 4.9 51 161-212 5-55 (65)
381 smart00777 Mad3_BUB1_I Mad3/BU 39.8 1.7E+02 0.0037 24.3 7.3 42 599-640 80-123 (125)
382 COG2178 Predicted RNA-binding 39.1 3E+02 0.0064 24.9 9.6 61 411-471 32-97 (204)
383 PF06552 TOM20_plant: Plant sp 39.1 2.9E+02 0.0062 24.7 9.0 78 304-383 31-125 (186)
384 smart00028 TPR Tetratricopepti 38.9 50 0.0011 18.1 3.3 27 617-643 2-28 (34)
385 KOG4567 GTPase-activating prot 38.2 1.8E+02 0.004 28.3 7.9 57 498-561 263-319 (370)
386 PRK10941 hypothetical protein; 37.7 3.4E+02 0.0074 26.2 10.0 55 554-610 185-243 (269)
387 KOG4521 Nuclear pore complex, 37.6 7.6E+02 0.016 29.2 14.3 119 515-641 984-1127(1480)
388 PHA02875 ankyrin repeat protei 37.6 2.2E+02 0.0047 29.5 9.8 189 394-605 16-222 (413)
389 COG2909 MalT ATP-dependent tra 37.6 6.7E+02 0.015 28.6 24.5 222 419-641 426-684 (894)
390 PF04190 DUF410: Protein of un 37.5 3.8E+02 0.0082 25.7 19.8 26 407-432 89-114 (260)
391 PRK06645 DNA polymerase III su 37.4 3E+02 0.0065 29.5 10.5 98 254-372 196-293 (507)
392 PRK08691 DNA polymerase III su 37.4 2.9E+02 0.0063 30.8 10.4 40 254-293 187-226 (709)
393 COG5108 RPO41 Mitochondrial DN 36.8 2.6E+02 0.0056 30.4 9.5 75 413-490 33-115 (1117)
394 PRK14958 DNA polymerase III su 36.7 4.4E+02 0.0095 28.3 11.7 95 255-373 188-282 (509)
395 PF07575 Nucleopor_Nup85: Nup8 36.5 2E+02 0.0042 31.5 9.3 91 411-505 375-465 (566)
396 COG1747 Uncharacterized N-term 36.4 5.5E+02 0.012 27.2 24.0 177 440-626 63-249 (711)
397 COG5159 RPN6 26S proteasome re 36.4 4.1E+02 0.0088 25.7 12.0 53 307-359 9-68 (421)
398 PF09477 Type_III_YscG: Bacter 36.2 2.3E+02 0.005 22.8 9.5 7 563-569 53-59 (116)
399 PF04090 RNA_pol_I_TF: RNA pol 36.1 3.4E+02 0.0073 24.7 9.7 29 444-472 42-70 (199)
400 PF11838 ERAP1_C: ERAP1-like C 36.0 4.4E+02 0.0095 26.0 19.4 109 424-538 146-261 (324)
401 KOG3636 Uncharacterized conser 35.7 5.1E+02 0.011 26.7 14.8 89 436-526 176-272 (669)
402 PRK07003 DNA polymerase III su 35.4 5.6E+02 0.012 29.1 12.1 77 256-333 189-277 (830)
403 PRK14951 DNA polymerase III su 34.8 3.6E+02 0.0077 29.8 10.7 39 254-292 192-230 (618)
404 COG2812 DnaX DNA polymerase II 34.6 2.5E+02 0.0055 29.9 9.3 93 105-200 164-281 (515)
405 KOG2659 LisH motif-containing 34.5 3.8E+02 0.0083 24.9 9.9 65 510-577 22-91 (228)
406 COG4003 Uncharacterized protei 34.4 2E+02 0.0043 21.6 6.2 36 587-622 36-71 (98)
407 KOG3807 Predicted membrane pro 34.4 3.1E+02 0.0068 26.9 8.9 123 424-557 232-354 (556)
408 PF09477 Type_III_YscG: Bacter 34.3 2.5E+02 0.0054 22.6 8.9 77 493-578 21-97 (116)
409 smart00638 LPD_N Lipoprotein N 34.2 6.6E+02 0.014 27.5 23.1 64 406-474 308-371 (574)
410 COG5187 RPN7 26S proteasome re 33.7 4.5E+02 0.0098 25.5 14.1 64 478-543 115-184 (412)
411 COG5108 RPO41 Mitochondrial DN 33.5 2.5E+02 0.0054 30.6 8.7 75 306-383 33-115 (1117)
412 PF10475 DUF2450: Protein of u 33.4 3.1E+02 0.0066 26.9 9.3 54 305-364 102-155 (291)
413 KOG1941 Acetylcholine receptor 33.3 5.2E+02 0.011 26.0 16.2 54 414-467 128-186 (518)
414 COG0735 Fur Fe2+/Zn2+ uptake r 33.2 2.5E+02 0.0055 24.0 7.7 33 413-445 25-57 (145)
415 PF09670 Cas_Cas02710: CRISPR- 32.9 5.6E+02 0.012 26.3 12.0 53 488-542 141-197 (379)
416 KOG4648 Uncharacterized conser 32.8 2.8E+02 0.0062 27.4 8.4 82 416-506 105-186 (536)
417 PF09868 DUF2095: Uncharacteri 32.7 1.6E+02 0.0035 23.7 5.5 41 588-628 67-107 (128)
418 PHA02989 ankyrin repeat protei 32.6 6.4E+02 0.014 26.9 15.8 15 356-370 88-102 (494)
419 PRK14961 DNA polymerase III su 32.3 4.3E+02 0.0094 26.8 10.6 94 255-372 188-281 (363)
420 KOG2659 LisH motif-containing 32.1 3.3E+02 0.0071 25.3 8.4 98 474-575 22-128 (228)
421 TIGR02397 dnaX_nterm DNA polym 31.4 5.5E+02 0.012 25.8 12.6 39 254-292 185-223 (355)
422 smart00777 Mad3_BUB1_I Mad3/BU 31.0 2E+02 0.0043 24.0 6.3 40 567-606 80-123 (125)
423 PF11817 Foie-gras_1: Foie gra 30.9 2.6E+02 0.0056 26.6 8.2 57 519-575 183-243 (247)
424 PF10475 DUF2450: Protein of u 30.7 5.2E+02 0.011 25.3 11.4 22 549-570 196-217 (291)
425 PRK14956 DNA polymerase III su 30.6 5.8E+02 0.013 27.1 11.0 80 119-198 191-282 (484)
426 PRK07764 DNA polymerase III su 30.0 5.4E+02 0.012 29.7 11.5 91 256-369 190-280 (824)
427 KOG2908 26S proteasome regulat 30.0 5.7E+02 0.012 25.5 10.5 84 412-495 79-174 (380)
428 PF14561 TPR_20: Tetratricopep 29.9 2E+02 0.0043 22.2 5.9 44 589-632 29-74 (90)
429 PF09454 Vps23_core: Vps23 cor 29.9 1.1E+02 0.0024 21.9 4.1 49 406-455 6-54 (65)
430 KOG0159 Cytochrome P450 CYP11/ 29.8 4.7E+02 0.01 27.9 10.0 37 349-385 311-347 (519)
431 PRK09111 DNA polymerase III su 29.3 3.9E+02 0.0085 29.4 10.0 39 254-292 200-238 (598)
432 PF11838 ERAP1_C: ERAP1-like C 28.8 5.7E+02 0.012 25.2 20.1 118 378-502 136-261 (324)
433 PF08311 Mad3_BUB1_I: Mad3/BUB 28.2 3.5E+02 0.0076 22.5 9.1 43 426-468 81-124 (126)
434 PRK14963 DNA polymerase III su 28.1 4.7E+02 0.01 28.1 10.2 91 255-370 185-275 (504)
435 PF08424 NRDE-2: NRDE-2, neces 27.9 6.1E+02 0.013 25.2 17.5 23 559-581 163-185 (321)
436 KOG0687 26S proteasome regulat 27.8 6.1E+02 0.013 25.1 15.6 135 474-610 66-209 (393)
437 PRK14971 DNA polymerase III su 27.7 5.3E+02 0.011 28.5 10.7 39 254-292 189-227 (614)
438 PRK13342 recombination factor 27.5 7.1E+02 0.015 25.8 17.8 105 264-386 173-280 (413)
439 PRK10292 hypothetical protein; 27.3 2.3E+02 0.005 20.1 7.2 37 392-428 18-54 (69)
440 KOG4077 Cytochrome c oxidase, 27.1 3.7E+02 0.008 22.4 9.6 49 388-436 64-112 (149)
441 PF09868 DUF2095: Uncharacteri 27.0 2.5E+02 0.0055 22.7 5.8 25 414-438 67-91 (128)
442 PF02847 MA3: MA3 domain; Int 26.9 2.4E+02 0.0052 22.6 6.3 24 305-328 6-29 (113)
443 PF12862 Apc5: Anaphase-promot 26.8 2.6E+02 0.0056 21.6 6.2 24 621-644 46-69 (94)
444 PRK07914 hypothetical protein; 26.8 6.4E+02 0.014 25.0 10.9 41 252-292 135-175 (320)
445 COG5210 GTPase-activating prot 26.7 5.9E+02 0.013 27.3 10.8 58 462-520 361-418 (496)
446 COG0735 Fur Fe2+/Zn2+ uptake r 26.4 2.9E+02 0.0063 23.7 6.8 59 573-631 9-70 (145)
447 PRK14952 DNA polymerase III su 26.2 5.4E+02 0.012 28.2 10.3 39 255-293 187-225 (584)
448 PF04190 DUF410: Protein of un 26.1 5.9E+02 0.013 24.4 20.0 83 441-543 88-170 (260)
449 PF13934 ELYS: Nuclear pore co 25.8 5.5E+02 0.012 24.0 14.9 132 446-593 79-212 (226)
450 PF03745 DUF309: Domain of unk 25.4 2.3E+02 0.0051 20.0 5.1 46 313-358 11-61 (62)
451 PRK11639 zinc uptake transcrip 25.4 3.9E+02 0.0086 23.6 7.7 36 422-457 39-74 (169)
452 PRK14960 DNA polymerase III su 25.3 7.6E+02 0.016 27.6 11.0 40 254-293 186-225 (702)
453 PRK06305 DNA polymerase III su 25.2 8E+02 0.017 25.9 11.2 37 256-292 191-227 (451)
454 PRK13342 recombination factor 25.0 7.9E+02 0.017 25.5 20.5 42 412-453 231-275 (413)
455 PRK08691 DNA polymerase III su 24.9 5.7E+02 0.012 28.6 10.1 78 119-197 189-278 (709)
456 KOG2396 HAT (Half-A-TPR) repea 24.9 8.5E+02 0.018 25.8 34.3 411 144-578 87-558 (568)
457 COG2812 DnaX DNA polymerase II 24.8 4.9E+02 0.011 27.9 9.3 41 253-293 186-226 (515)
458 PRK07452 DNA polymerase III su 24.6 6.6E+02 0.014 24.9 10.3 97 252-372 137-235 (326)
459 PRK14970 DNA polymerase III su 24.5 7.5E+02 0.016 25.1 11.3 74 122-197 181-267 (367)
460 COG4003 Uncharacterized protei 24.4 3E+02 0.0065 20.7 5.4 31 413-444 36-66 (98)
461 smart00638 LPD_N Lipoprotein N 24.1 9.6E+02 0.021 26.2 27.9 32 301-332 340-371 (574)
462 PF12862 Apc5: Anaphase-promot 24.1 3.4E+02 0.0074 21.0 6.9 52 419-470 9-68 (94)
463 cd07153 Fur_like Ferric uptake 23.8 1.6E+02 0.0036 23.7 4.8 48 169-216 5-52 (116)
464 PRK12323 DNA polymerase III su 23.7 1.1E+03 0.023 26.5 12.6 34 259-292 197-230 (700)
465 PF11817 Foie-gras_1: Foie gra 23.4 3.4E+02 0.0074 25.7 7.5 57 484-540 184-244 (247)
466 COG1466 HolA DNA polymerase II 23.1 6.5E+02 0.014 25.2 9.8 41 252-292 147-187 (334)
467 PRK14950 DNA polymerase III su 23.0 8.5E+02 0.018 26.8 11.3 37 256-292 190-226 (585)
468 PRK05563 DNA polymerase III su 22.9 1E+03 0.022 26.0 12.3 40 254-293 187-226 (559)
469 KOG0376 Serine-threonine phosp 22.4 1.7E+02 0.0037 30.4 5.3 54 522-578 12-66 (476)
470 PF14669 Asp_Glu_race_2: Putat 22.4 5.9E+02 0.013 23.1 15.1 55 448-502 137-205 (233)
471 PF02847 MA3: MA3 domain; Int 21.8 4.2E+02 0.0091 21.1 8.4 63 340-404 6-68 (113)
472 PRK06645 DNA polymerase III su 21.8 1E+03 0.022 25.6 11.8 46 459-506 189-235 (507)
473 PF12968 DUF3856: Domain of Un 21.6 4.7E+02 0.01 21.6 6.6 22 198-219 54-75 (144)
474 cd07153 Fur_like Ferric uptake 21.5 2.2E+02 0.0048 23.0 5.1 46 307-352 6-51 (116)
475 PF09670 Cas_Cas02710: CRISPR- 21.4 8.9E+02 0.019 24.8 12.9 55 417-472 140-198 (379)
476 PF06552 TOM20_plant: Plant sp 21.3 3.9E+02 0.0084 23.9 6.5 75 425-510 52-138 (186)
477 KOG4507 Uncharacterized conser 20.9 7.3E+02 0.016 26.9 9.3 138 367-506 567-704 (886)
478 PRK14962 DNA polymerase III su 20.9 1E+03 0.022 25.3 20.4 37 256-292 187-223 (472)
479 PRK14953 DNA polymerase III su 20.7 1E+03 0.023 25.3 11.3 39 254-292 187-225 (486)
480 KOG1498 26S proteasome regulat 20.2 9.4E+02 0.02 24.6 18.7 110 414-553 137-251 (439)
481 COG2987 HutU Urocanate hydrata 20.1 85 0.0018 32.0 2.6 42 629-670 216-262 (561)
No 1
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=2.5e-75 Score=658.88 Aligned_cols=610 Identities=13% Similarity=0.107 Sum_probs=501.8
Q ss_pred CCccccccchhccc----ccCCCccccccccccCcccccccccccCCCCCCCCCcccccCCCCcc------------ccc
Q 042546 33 PNLTLHESLHTLSS----LLPTSSHTFYSRFSRLPICYSRLINLIDPKNPNFRNPMICSYSSEPA------------MEQ 96 (671)
Q Consensus 33 ~~~~~h~~~~~~~~----~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~wn~~i~~~~~~~~------------~~~ 96 (671)
.|.++|..+++.+. +++|+||++|+|+|++++|+++|++| +.+|+++||+||++|++.+. ..|
T Consensus 104 ~a~~~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~~f~~m-~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g 182 (857)
T PLN03077 104 EGSRVCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKM-PERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAG 182 (857)
T ss_pred HHHHHHHHHHHcCCCCCchHHHHHHHHHHhCCChHHHHHHHhcC-CCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence 44566666655554 47899999999999999999999999 99999999999999998764 248
Q ss_pred cCCchhHHHHHhhhcCCchhHHHHHHhc------CCCCCH---HHHHHHHHhcCCChHHHHHHHHHHhhcCCCCCCHHHH
Q 042546 97 KESDFTVVSDIFYKFSDVNDISKQLELS------GVVFTH---EMVLKVLKNLESSPDEARRFFNWVLEKESERLSSKTY 167 (671)
Q Consensus 97 ~~p~~~t~~~~l~~~~~~~~~~~~~~~~------~~~~~~---~~~~~~l~~~~~~~~~A~~~f~~m~~~~~~~~~~~~~ 167 (671)
..||.+||..++++|+..+++..+.+.| |..++. +.++..+.+ +|++++|+++|+.|++ ||+++|
T Consensus 183 ~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k-~g~~~~A~~lf~~m~~-----~d~~s~ 256 (857)
T PLN03077 183 VRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVK-CGDVVSARLVFDRMPR-----RDCISW 256 (857)
T ss_pred CCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhc-CCCHHHHHHHHhcCCC-----CCcchh
Confidence 9999999999999999887766555443 444443 445555566 7999999999999998 999999
Q ss_pred HHHHHHHHccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHcCCCCChHHHHHHHHHHHHhc
Q 042546 168 NLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRNKMTEKFEKEGLESDLEKLKGIFATGSIDNSIEKVASRICKVVRS 247 (671)
Q Consensus 168 n~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (671)
|+||.+|++.|++++|+++|++|.+.|+.||..||+++|.+|++.|+.+.+.+++..+.+.+..+.......++..+.+.
T Consensus 257 n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~ 336 (857)
T PLN03077 257 NAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSL 336 (857)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999988887777766666665666666655555
Q ss_pred CCC--hhHHHHHHhhcccccChHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHccCChHHHHHHHH
Q 042546 248 DIW--GDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLD 325 (671)
Q Consensus 248 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 325 (671)
+.+ +..+...+...+....+.++..+.+. |++++|+++|++|.+ .|+.||..||+++|.+|++.|++++|.++++
T Consensus 337 g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~--g~~~~A~~lf~~M~~-~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~ 413 (857)
T PLN03077 337 GSWGEAEKVFSRMETKDAVSWTAMISGYEKN--GLPDKALETYALMEQ-DNVSPDEITIASVLSACACLGDLDVGVKLHE 413 (857)
T ss_pred CCHHHHHHHHhhCCCCCeeeHHHHHHHHHhC--CCHHHHHHHHHHHHH-hCCCCCceeHHHHHHHHhccchHHHHHHHHH
Confidence 533 23344444433333333444444443 777788888887765 5677888888888888888888888888888
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCC
Q 042546 326 EMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNV 405 (671)
Q Consensus 326 ~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (671)
.|.+.|+.|+..+|++||.+|++.|++++|.++|++|. .||..+|+++|.+|++.|..+ .+..++++|.. +..
T Consensus 414 ~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~vs~~~mi~~~~~~g~~~--eA~~lf~~m~~-~~~ 486 (857)
T PLN03077 414 LAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIP----EKDVISWTSIIAGLRLNNRCF--EALIFFRQMLL-TLK 486 (857)
T ss_pred HHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCC----CCCeeeHHHHHHHHHHCCCHH--HHHHHHHHHHh-CCC
Confidence 88777777788888888888888888888888887775 357777888888887777443 56677777764 588
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 042546 406 LTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLI 485 (671)
Q Consensus 406 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li 485 (671)
||..||+++|.+|++.|+++.+.+++..|.+.|+.+|..++|+||++|+++|++++|+++|+.| .||.++||+||
T Consensus 487 pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI 561 (857)
T PLN03077 487 PNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-----EKDVVSWNILL 561 (857)
T ss_pred CCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-----CCChhhHHHHH
Confidence 8888888888888888888888888888888888888888888999999999999999999887 58999999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 042546 486 KGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRG 565 (671)
Q Consensus 486 ~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~ 565 (671)
.+|++.|+.++|.++|++|.+ .|+.||..||+++|.+|++.|++++|.++|++|.+++|+.|+..+|++|+++|++.|+
T Consensus 562 ~~~~~~G~~~~A~~lf~~M~~-~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~ 640 (857)
T PLN03077 562 TGYVAHGKGSMAVELFNRMVE-SGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGK 640 (857)
T ss_pred HHHHHcCCHHHHHHHHHHHHH-cCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCC
Confidence 999999999999999999999 8999999999999999999999999999999998667999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHH---HHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhc
Q 042546 566 FKDALSLLCLMKDHGFPPFVDPF---IKYVSKSGTSDDAIAFLKGMTSKRFPSMSVVLCLFAAFFQARRHSEAQDLLSKC 642 (671)
Q Consensus 566 ~~~A~~l~~~m~~~~~~p~~~t~---~~~l~~~g~~~~A~~~~~~m~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m 642 (671)
+++|.+++++|. ++||..+| +.+|...|+.+.|+...+++.+..+.+...|..|.+.|++.|+|++|.++.+.|
T Consensus 641 ~~eA~~~~~~m~---~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M 717 (857)
T PLN03077 641 LTEAYNFINKMP---ITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTM 717 (857)
T ss_pred HHHHHHHHHHCC---CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHH
Confidence 999999999984 78988765 677778899999999988888877778889999999999999999999999999
Q ss_pred hHhhh------------------------------ccHHHHHHHHhhhcCCCCCCC
Q 042546 643 PRYVR------------------------------NHADVLNLLYSKKSGGDSAPA 668 (671)
Q Consensus 643 ~~~~~------------------------------~~~~~~~l~~~m~~~g~~p~~ 668 (671)
.+.+- .+.....+..+|++.|+.||.
T Consensus 718 ~~~g~~k~~g~s~ie~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~g~~~~~ 773 (857)
T PLN03077 718 RENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGFYEKMKASGLAGSE 773 (857)
T ss_pred HHcCCCCCCCccEEEECCEEEEEecCCCCCcchHHHHHHHHHHHHHHHhCCcCCCc
Confidence 87531 134456788899999999985
No 2
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=2e-70 Score=605.79 Aligned_cols=499 Identities=15% Similarity=0.160 Sum_probs=371.5
Q ss_pred CCCccccccccccCcccccccccccCCCCCCCCCcccccCCCCccccccCCchhHHHHHhhhcCCchhHHHHHHhcCCCC
Q 042546 49 PTSSHTFYSRFSRLPICYSRLINLIDPKNPNFRNPMICSYSSEPAMEQKESDFTVVSDIFYKFSDVNDISKQLELSGVVF 128 (671)
Q Consensus 49 ~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~wn~~i~~~~~~~~~~~~~p~~~t~~~~l~~~~~~~~~~~~~~~~~~~~ 128 (671)
...+++.|+|+|++++|.++|++| +.++++.||.++. ..+
T Consensus 373 ~~~~y~~l~r~G~l~eAl~Lfd~M-~~~gvv~~~~v~~------------------~~l--------------------- 412 (1060)
T PLN03218 373 YIDAYNRLLRDGRIKDCIDLLEDM-EKRGLLDMDKIYH------------------AKF--------------------- 412 (1060)
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHH-HhCCCCCchHHHH------------------HHH---------------------
Confidence 355667778889999999999999 8888888877542 112
Q ss_pred CHHHHHHHHHhcCCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 042546 129 THEMVLKVLKNLESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRNKMTEK 208 (671)
Q Consensus 129 ~~~~~~~~l~~~~~~~~~A~~~f~~m~~~~~~~~~~~~~n~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~ 208 (671)
...+.. .|.+++|+.+|+.|+. ||..+||.+|.+|++.|++++|.++|++|.+.|+.||..+|+++|.+
T Consensus 413 -----i~~~~~-~g~~~eAl~lf~~M~~-----pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~ 481 (1060)
T PLN03218 413 -----FKACKK-QRAVKEAFRFAKLIRN-----PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLIST 481 (1060)
T ss_pred -----HHHHHH-CCCHHHHHHHHHHcCC-----CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 222233 5889999999999987 99999999999999999999999999999999999999999999999
Q ss_pred HHHcCChhHHHHHHHHHHcCCCCChHHHHHHHHHHHHhcCCChhHHHHHHhhcccccChHHHHHHHHHhCCChHHHHHHH
Q 042546 209 FEKEGLESDLEKLKGIFATGSIDNSIEKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFF 288 (671)
Q Consensus 209 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~f 288 (671)
|++. |++++|.++|
T Consensus 482 y~k~------------------------------------------------------------------G~vd~A~~vf 495 (1060)
T PLN03218 482 CAKS------------------------------------------------------------------GKVDAMFEVF 495 (1060)
T ss_pred HHhC------------------------------------------------------------------cCHHHHHHHH
Confidence 9988 4566677777
Q ss_pred HHHHHcCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHh--CC
Q 042546 289 RWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMA--CK 366 (671)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~--~g 366 (671)
++|.+ .|+.||..+||+||.+|++.|++++|.++|++|.+.|+.||..||+.||.+|++.|++++|.++|++|.+ .|
T Consensus 496 ~eM~~-~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~g 574 (1060)
T PLN03218 496 HEMVN-AGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHP 574 (1060)
T ss_pred HHHHH-cCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCC
Confidence 77765 5667777777777777777777777777777777777777777777777777777777777777777764 56
Q ss_pred CCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 042546 367 NKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMK 446 (671)
Q Consensus 367 ~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~ 446 (671)
+.||..+|+++|.+|++.|.. +.+.++++.|.+.|+.|+..+||++|.+|++.|++++|.++|++|.+.|+.||..+|
T Consensus 575 i~PD~vTynaLI~ay~k~G~l--deA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~Ty 652 (1060)
T PLN03218 575 IDPDHITVGALMKACANAGQV--DRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFF 652 (1060)
T ss_pred CCCcHHHHHHHHHHHHHCCCH--HHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH
Confidence 777777777777777777743 356677777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHh
Q 042546 447 SKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCS 526 (671)
Q Consensus 447 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~ 526 (671)
+++|.+|++.|++++|.++|++|.+.|+.||..+|+++|.+|++.|++++|.++|++|.+ .|+.||..+|++||.+|++
T Consensus 653 nsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~-~g~~PdvvtyN~LI~gy~k 731 (1060)
T PLN03218 653 SALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKS-IKLRPTVSTMNALITALCE 731 (1060)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHH
Confidence 777777777777777777777777777777777777777777777777777777777777 6777777777777777777
Q ss_pred cCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH---HH----HhcC---
Q 042546 527 KNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPFIK---YV----SKSG--- 596 (671)
Q Consensus 527 ~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~t~~~---~l----~~~g--- 596 (671)
.|++++|.++|++|.. .|+.||..||+++|.+|++.|++++|.+++++|.+.|+.||..++.. ++ .+++
T Consensus 732 ~G~~eeAlelf~eM~~-~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~ 810 (1060)
T PLN03218 732 GNQLPKALEVLSEMKR-LGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALG 810 (1060)
T ss_pred CCCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhh
Confidence 7777777777777765 37777777777777777777777777777777777777777655522 11 1111
Q ss_pred ----------------ChHHHHHHHHHhhhCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHhchHhh-------------
Q 042546 597 ----------------TSDDAIAFLKGMTSKRF-PSMSVVLCLFAAFFQARRHSEAQDLLSKCPRYV------------- 646 (671)
Q Consensus 597 ----------------~~~~A~~~~~~m~~~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~------------- 646 (671)
..++|..+|++|.+.+. ||..+|+.++.++++.+..+.+.++++.|....
T Consensus 811 ~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~ 890 (1060)
T PLN03218 811 EPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVD 890 (1060)
T ss_pred hhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHH
Confidence 13457777777777443 777777777777777777777777776653210
Q ss_pred --h-ccHHHHHHHHhhhcCCCCCCCc
Q 042546 647 --R-NHADVLNLLYSKKSGGDSAPAV 669 (671)
Q Consensus 647 --~-~~~~~~~l~~~m~~~g~~p~~~ 669 (671)
+ ..++++.+|++|.+.|+.|+..
T Consensus 891 g~~~~~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 891 GFGEYDPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred hhccChHHHHHHHHHHHHcCCCCCcc
Confidence 1 1357888888888999999875
No 3
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=7.1e-71 Score=622.72 Aligned_cols=543 Identities=12% Similarity=0.046 Sum_probs=469.4
Q ss_pred cCCCccccccccccCcccccccccccCCCCCCCCCcccccCCCCccccccCCchhHHHHHhhhcCCchhHHHHHHhc---
Q 042546 48 LPTSSHTFYSRFSRLPICYSRLINLIDPKNPNFRNPMICSYSSEPAMEQKESDFTVVSDIFYKFSDVNDISKQLELS--- 124 (671)
Q Consensus 48 ~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~wn~~i~~~~~~~~~~~~~p~~~t~~~~l~~~~~~~~~~~~~~~~--- 124 (671)
..|+++..|++.|++++|..+|++| . ..+..|+..++..++.+|.+.+.+..+...+
T Consensus 53 ~~n~~i~~l~~~g~~~~A~~l~~~m-~-------------------~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 112 (857)
T PLN03077 53 DSNSQLRALCSHGQLEQALKLLESM-Q-------------------ELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRA 112 (857)
T ss_pred hHHHHHHHHHhCCCHHHHHHHHHHH-H-------------------hcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence 5699999999999999999999998 2 2246788899999999998877666555443
Q ss_pred ---CCCCCH---HHHHHHHHhcCCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCC
Q 042546 125 ---GVVFTH---EMVLKVLKNLESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVA 198 (671)
Q Consensus 125 ---~~~~~~---~~~~~~l~~~~~~~~~A~~~f~~m~~~~~~~~~~~~~n~li~~~~~~g~~~~a~~l~~~m~~~g~~p~ 198 (671)
+...+. +.++..+.+ +|+++.|+++|++|++ ||+++||+||.+|++.|++++|+++|++|...|+.||
T Consensus 113 ~~~~~~~~~~~~n~li~~~~~-~g~~~~A~~~f~~m~~-----~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd 186 (857)
T PLN03077 113 LSSHPSLGVRLGNAMLSMFVR-FGELVHAWYVFGKMPE-----RDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPD 186 (857)
T ss_pred HHcCCCCCchHHHHHHHHHHh-CCChHHHHHHHhcCCC-----CCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC
Confidence 222332 344555556 7999999999999998 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHcCCCCChHHHHHHHHHHHHhcCCChhHHHHHHhhcccccChHHHHHHHHHh-
Q 042546 199 SHVRNKMTEKFEKEGLESDLEKLKGIFATGSIDNSIEKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKL- 277 (671)
Q Consensus 199 ~~t~~~ll~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 277 (671)
.+||+++|++|++.+++..+. +++..+.+.|+..+..+.+.++..+
T Consensus 187 ~~t~~~ll~~~~~~~~~~~~~---------------------------------~~~~~~~~~g~~~~~~~~n~Li~~y~ 233 (857)
T PLN03077 187 VYTFPCVLRTCGGIPDLARGR---------------------------------EVHAHVVRFGFELDVDVVNALITMYV 233 (857)
T ss_pred hhHHHHHHHHhCCccchhhHH---------------------------------HHHHHHHHcCCCcccchHhHHHHHHh
Confidence 999999999999887665543 5566666666665544444444443
Q ss_pred -CCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHH
Q 042546 278 -GDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAV 356 (671)
Q Consensus 278 -~~~~~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~ 356 (671)
.|++++|.++|+.|. .||.++||+||.+|++.|++++|+++|++|.+.|+.||..||+.+|.+|++.|+++.|.
T Consensus 234 k~g~~~~A~~lf~~m~-----~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~ 308 (857)
T PLN03077 234 KCGDVVSARLVFDRMP-----RRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGR 308 (857)
T ss_pred cCCCHHHHHHHHhcCC-----CCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHH
Confidence 289999999999886 68999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 042546 357 DLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEE 436 (671)
Q Consensus 357 ~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 436 (671)
+++..|.+.|+.||..+||++|.+|+++|..+ .+.+++++|. .||..+||++|.+|++.|++++|.++|++|.+
T Consensus 309 ~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~--~A~~vf~~m~----~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~ 382 (857)
T PLN03077 309 EMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWG--EAEKVFSRME----TKDAVSWTAMISGYEKNGLPDKALETYALMEQ 382 (857)
T ss_pred HHHHHHHHhCCccchHHHHHHHHHHHhcCCHH--HHHHHHhhCC----CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999544 6777887774 47888999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHH
Q 042546 437 GGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYA 516 (671)
Q Consensus 437 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~ 516 (671)
.|+.||..||+.++.+|++.|++++|.++++.|.+.|+.|+..+||+||.+|++.|++++|.++|++|.+ +|..+
T Consensus 383 ~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~-----~d~vs 457 (857)
T PLN03077 383 DNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE-----KDVIS 457 (857)
T ss_pred hCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC-----CCeee
Confidence 9999999999999999999999999999999999999999999999999999999999999999999865 57889
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH---HHHHHHHH
Q 042546 517 IDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFV---DPFIKYVS 593 (671)
Q Consensus 517 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~---~t~~~~l~ 593 (671)
|+++|.+|++.|+.++|.++|++|.. ++.||..||+++|.+|++.|.++.+.+++..|.+.|+.||. .+++.+|+
T Consensus 458 ~~~mi~~~~~~g~~~eA~~lf~~m~~--~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~ 535 (857)
T PLN03077 458 WTSIIAGLRLNNRCFEALIFFRQMLL--TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYV 535 (857)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHh--CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHH
Confidence 99999999999999999999999975 68999999999999999999999999999999999998887 45688889
Q ss_pred hcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhchHhh------------------hccHHHHHH
Q 042546 594 KSGTSDDAIAFLKGMTSKRFPSMSVVLCLFAAFFQARRHSEAQDLLSKCPRYV------------------RNHADVLNL 655 (671)
Q Consensus 594 ~~g~~~~A~~~~~~m~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~------------------~~~~~~~~l 655 (671)
++|++++|.++|+.+ .||..+|++||.+|++.|+.++|.++|++|.+.+ +..+++.++
T Consensus 536 k~G~~~~A~~~f~~~----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~ 611 (857)
T PLN03077 536 RCGRMNYAWNQFNSH----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEY 611 (857)
T ss_pred HcCCHHHHHHHHHhc----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHH
Confidence 999999999998887 4788899999999999999999999999887532 346788889
Q ss_pred HHhhh-cCCCCCCCcCC
Q 042546 656 LYSKK-SGGDSAPAVTA 671 (671)
Q Consensus 656 ~~~m~-~~g~~p~~~t~ 671 (671)
|+.|+ +.|+.||..||
T Consensus 612 f~~M~~~~gi~P~~~~y 628 (857)
T PLN03077 612 FHSMEEKYSITPNLKHY 628 (857)
T ss_pred HHHHHHHhCCCCchHHH
Confidence 99998 67899987775
No 4
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.6e-67 Score=582.80 Aligned_cols=463 Identities=16% Similarity=0.195 Sum_probs=421.8
Q ss_pred HHHHHHHhc--CCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 042546 132 MVLKVLKNL--ESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRNKMTEKF 209 (671)
Q Consensus 132 ~~~~~l~~~--~~~~~~A~~~f~~m~~~~~~~~~~~~~n~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~ 209 (671)
.+..++.++ +|++++|+++|++|++..-+.++...++.++.+|++.|.+++|+.+|+.|.. ||..||+.+|.+|
T Consensus 372 ~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~LL~a~ 447 (1060)
T PLN03218 372 EYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNMLMSVC 447 (1060)
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHHHHHHH
Confidence 344444433 5899999999999998444567888888999999999999999999999974 8999999999999
Q ss_pred HHcCChhHHHHHHHHHHcCCCCChHHHHHHHHHHHHhcCCChhHHHHHHhhcccccChHHHHHHHHHhCCChHHHHHHHH
Q 042546 210 EKEGLESDLEKLKGIFATGSIDNSIEKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFR 289 (671)
Q Consensus 210 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~f~ 289 (671)
++. |+++.|.++|+
T Consensus 448 ~k~------------------------------------------------------------------g~~e~A~~lf~ 461 (1060)
T PLN03218 448 ASS------------------------------------------------------------------QDIDGALRVLR 461 (1060)
T ss_pred HhC------------------------------------------------------------------cCHHHHHHHHH
Confidence 987 67788899999
Q ss_pred HHHHcCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCC
Q 042546 290 WAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKP 369 (671)
Q Consensus 290 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p 369 (671)
.|.+ .|+.||..+||+||.+|++.|++++|.++|++|.+.|+.||..||+.||.+|++.|++++|.++|++|.+.|+.|
T Consensus 462 ~M~~-~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~P 540 (1060)
T PLN03218 462 LVQE-AGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKP 540 (1060)
T ss_pred HHHH-cCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCC
Confidence 9987 789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhcCcccHHHHHHHHHHHHH--cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 042546 370 SVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRE--NGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKS 447 (671)
Q Consensus 370 ~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~ 447 (671)
|..||+.+|.+|++.|.. +.+.+++++|.. .|+.||..+|+++|.+|++.|++++|.++|++|.+.|+.|+..+||
T Consensus 541 D~vTYnsLI~a~~k~G~~--deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tyn 618 (1060)
T PLN03218 541 DRVVFNALISACGQSGAV--DRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYT 618 (1060)
T ss_pred CHHHHHHHHHHHHHCCCH--HHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHH
Confidence 999999999999999954 478899999976 6899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhc
Q 042546 448 KIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSK 527 (671)
Q Consensus 448 ~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~ 527 (671)
++|.+|++.|++++|.++|++|.+.|+.||..||+++|.+|++.|++++|.++|++|.+ .|+.||..+|++||.+|+++
T Consensus 619 sLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k-~G~~pd~~tynsLI~ay~k~ 697 (1060)
T PLN03218 619 IAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARK-QGIKLGTVSYSSLMGACSNA 697 (1060)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999 99999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH---HHHHHhcCChHHHHHH
Q 042546 528 NRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPF---IKYVSKSGTSDDAIAF 604 (671)
Q Consensus 528 g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~t~---~~~l~~~g~~~~A~~~ 604 (671)
|++++|.++|++|.. .++.||..+|++||.+|++.|++++|+++|++|.+.|+.||..|| +.+|++.|++++|.++
T Consensus 698 G~~eeA~~lf~eM~~-~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l 776 (1060)
T PLN03218 698 KNWKKALELYEDIKS-IKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDL 776 (1060)
T ss_pred CCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 999999999999987 489999999999999999999999999999999999999999887 6788999999999999
Q ss_pred HHHhhhCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHhchHh--------hhccHHHHHHHHhhhcCCCCCCCcCC
Q 042546 605 LKGMTSKRF-PSMSVVLCLFAAFFQARRHSEAQDLLSKCPRY--------VRNHADVLNLLYSKKSGGDSAPAVTA 671 (671)
Q Consensus 605 ~~~m~~~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~--------~~~~~~~~~l~~~m~~~g~~p~~~t~ 671 (671)
|++|.+.+. ||..+|++++..|.+ ++++|.++.+.+... ..-...++.+|++|.+.|+.||.+||
T Consensus 777 ~~~M~k~Gi~pd~~tynsLIglc~~--~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~ 850 (1060)
T PLN03218 777 LSQAKEDGIKPNLVMCRCITGLCLR--RFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVL 850 (1060)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHH--HHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHHH
Confidence 999999654 999999999976542 455555554332211 12246799999999999999999886
No 5
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=6.4e-64 Score=552.82 Aligned_cols=485 Identities=13% Similarity=0.120 Sum_probs=441.3
Q ss_pred HHHHHHhcCCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 042546 133 VLKVLKNLESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRNKMTEKFEKE 212 (671)
Q Consensus 133 ~~~~l~~~~~~~~~A~~~f~~m~~~~~~~~~~~~~n~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~ 212 (671)
.+..+.. .|++++|+++|++|....++.||..+|+++|.+|++.++++.|.+++..|.+.|+.||..+|+.++.+|++.
T Consensus 93 ~i~~l~~-~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~ 171 (697)
T PLN03081 93 QIEKLVA-CGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKC 171 (697)
T ss_pred HHHHHHc-CCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcC
Confidence 3334445 699999999999999866688999999999999999999999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHcCCCCChHHHHHHHHHHHHhcCCChhHHHHHHhhcccccChHHHHHHHHHhCCChHHHHHHHHHHH
Q 042546 213 GLESDLEKLKGIFATGSIDNSIEKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAE 292 (671)
Q Consensus 213 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~f~~~~ 292 (671)
|++++|.++ |++|+.++.+. .+.++..+.+. |++++|+++|++|.
T Consensus 172 g~~~~A~~l---f~~m~~~~~~t------------------------------~n~li~~~~~~--g~~~~A~~lf~~M~ 216 (697)
T PLN03081 172 GMLIDARRL---FDEMPERNLAS------------------------------WGTIIGGLVDA--GNYREAFALFREMW 216 (697)
T ss_pred CCHHHHHHH---HhcCCCCCeee------------------------------HHHHHHHHHHC--cCHHHHHHHHHHHH
Confidence 998887664 44554443321 12233344443 99999999999998
Q ss_pred HcCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHH
Q 042546 293 ESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVN 372 (671)
Q Consensus 293 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ 372 (671)
+ .|+.||..+|+.++.+|++.|..+.+.+++..|.+.|+.||..+|++||++|++.|++++|.++|++|. .+|.+
T Consensus 217 ~-~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~~~v 291 (697)
T PLN03081 217 E-DGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP----EKTTV 291 (697)
T ss_pred H-hCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC----CCChh
Confidence 7 689999999999999999999999999999999999999999999999999999999999999999996 47999
Q ss_pred HHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 042546 373 CCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFR 452 (671)
Q Consensus 373 ~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~ 452 (671)
+||++|.+|++.|..+ .+.+++++|.+.|+.||..||+++|.+|++.|++++|.+++..|.+.|+.||..+||+||++
T Consensus 292 t~n~li~~y~~~g~~~--eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~ 369 (697)
T PLN03081 292 AWNSMLAGYALHGYSE--EALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDL 369 (697)
T ss_pred HHHHHHHHHHhCCCHH--HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHH
Confidence 9999999999999554 67899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHH
Q 042546 453 LSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAID 532 (671)
Q Consensus 453 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~ 532 (671)
|++.|++++|.++|++|. .||.++||+||.+|++.|+.++|.++|++|.+ .|+.||..||+++|.+|++.|.+++
T Consensus 370 y~k~G~~~~A~~vf~~m~----~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~-~g~~Pd~~T~~~ll~a~~~~g~~~~ 444 (697)
T PLN03081 370 YSKWGRMEDARNVFDRMP----RKNLISWNALIAGYGNHGRGTKAVEMFERMIA-EGVAPNHVTFLAVLSACRYSGLSEQ 444 (697)
T ss_pred HHHCCCHHHHHHHHHhCC----CCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCCCCHHHHHHHHHHHhcCCcHHH
Confidence 999999999999999997 58999999999999999999999999999999 9999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH---HHHHHhcCChHHHHHHHHHhh
Q 042546 533 ACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPF---IKYVSKSGTSDDAIAFLKGMT 609 (671)
Q Consensus 533 A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~t~---~~~l~~~g~~~~A~~~~~~m~ 609 (671)
|.++|+.|.+++++.|+..+|++|+++|++.|++++|.+++++| ++.|+..+| +.+|+..|+++.|..+++++.
T Consensus 445 a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~ 521 (697)
T PLN03081 445 GWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLY 521 (697)
T ss_pred HHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHh
Confidence 99999999987899999999999999999999999999999877 578998766 677889999999999999998
Q ss_pred hCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhchHhhh------------------------------ccHHHHHHHHhh
Q 042546 610 SKRFPSMSVVLCLFAAFFQARRHSEAQDLLSKCPRYVR------------------------------NHADVLNLLYSK 659 (671)
Q Consensus 610 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~------------------------------~~~~~~~l~~~m 659 (671)
...+.+..+|..|+++|++.|++++|.+++++|.+.+- .+..+..+..+|
T Consensus 522 ~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~ 601 (697)
T PLN03081 522 GMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEI 601 (697)
T ss_pred CCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHH
Confidence 77767788999999999999999999999999987541 134567899999
Q ss_pred hcCCCCCCC
Q 042546 660 KSGGDSAPA 668 (671)
Q Consensus 660 ~~~g~~p~~ 668 (671)
++.|+.||.
T Consensus 602 ~~~gy~~~~ 610 (697)
T PLN03081 602 SEYGYVAEE 610 (697)
T ss_pred HHcCCCCCc
Confidence 999999985
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=6.5e-62 Score=536.87 Aligned_cols=450 Identities=13% Similarity=0.089 Sum_probs=395.1
Q ss_pred CCCCCCCCCcccccCCCCcc-------------ccccCCchhHHHHHhhhcCCchhHH------HHHHhcCCCCCHHHHH
Q 042546 74 DPKNPNFRNPMICSYSSEPA-------------MEQKESDFTVVSDIFYKFSDVNDIS------KQLELSGVVFTHEMVL 134 (671)
Q Consensus 74 ~~~~~~~wn~~i~~~~~~~~-------------~~~~~p~~~t~~~~l~~~~~~~~~~------~~~~~~~~~~~~~~~~ 134 (671)
..++.++||++|.+|.+.+. ..+..||..||..++.+|...+.+. ..+...|..++..++.
T Consensus 83 ~~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n 162 (697)
T PLN03081 83 IRKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMN 162 (697)
T ss_pred CCCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHH
Confidence 33455566666666655432 1235789999999999998775544 4445556666655444
Q ss_pred HH---HHhcCCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 042546 135 KV---LKNLESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRNKMTEKFEK 211 (671)
Q Consensus 135 ~~---l~~~~~~~~~A~~~f~~m~~~~~~~~~~~~~n~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~ 211 (671)
.+ +.+ +|++++|+++|++|++ ||+++||+||.+|++.|++++|+++|++|.+.|+.||..||++++.+|++
T Consensus 163 ~Li~~y~k-~g~~~~A~~lf~~m~~-----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~ 236 (697)
T PLN03081 163 RVLLMHVK-CGMLIDARRLFDEMPE-----RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAG 236 (697)
T ss_pred HHHHHHhc-CCCHHHHHHHHhcCCC-----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhc
Confidence 44 444 7999999999999998 99999999999999999999999999999999999999999999999998
Q ss_pred cCChhHHHHHHHHHHcCCCCChHHHHHHHHHHHHhcCCChhHHHHHHhhcccccChHHHHHHHHHhCCChHHHHHHHHHH
Q 042546 212 EGLESDLEKLKGIFATGSIDNSIEKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWA 291 (671)
Q Consensus 212 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~f~~~ 291 (671)
.| ..+.+.+++..+
T Consensus 237 ~~------------------------------------------------------------------~~~~~~~l~~~~ 250 (697)
T PLN03081 237 LG------------------------------------------------------------------SARAGQQLHCCV 250 (697)
T ss_pred CC------------------------------------------------------------------cHHHHHHHHHHH
Confidence 85 445556666666
Q ss_pred HHcCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCH
Q 042546 292 EESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSV 371 (671)
Q Consensus 292 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~ 371 (671)
.+ .|+.||..+||+||++|+++|++++|.++|++|.. +|.++||+||.+|++.|++++|.++|++|.+.|+.||.
T Consensus 251 ~~-~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~ 325 (697)
T PLN03081 251 LK-TGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQ 325 (697)
T ss_pred HH-hCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCH
Confidence 54 67899999999999999999999999999999974 59999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 042546 372 NCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAF 451 (671)
Q Consensus 372 ~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~ 451 (671)
.||++++.+|++.|..+ .+.+++..+.+.|..||..+||+||++|+++|++++|.++|++|. .||..+||+||.
T Consensus 326 ~t~~~ll~a~~~~g~~~--~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~----~~d~~t~n~lI~ 399 (697)
T PLN03081 326 FTFSIMIRIFSRLALLE--HAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP----RKNLISWNALIA 399 (697)
T ss_pred HHHHHHHHHHHhccchH--HHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC----CCCeeeHHHHHH
Confidence 99999999999998544 678899999999999999999999999999999999999999997 589999999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHH
Q 042546 452 RLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAI 531 (671)
Q Consensus 452 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~ 531 (671)
+|++.|+.++|.++|++|.+.|+.||.+||+++|.+|++.|.+++|.++|+.|.++.|+.|+..+|+++|++|++.|+++
T Consensus 400 ~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~ 479 (697)
T PLN03081 400 GYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLD 479 (697)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHH
Confidence 99999999999999999999999999999999999999999999999999999875799999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHhcCChHHHHHHHHH
Q 042546 532 DACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFV----DPFIKYVSKSGTSDDAIAFLKG 607 (671)
Q Consensus 532 ~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~----~t~~~~l~~~g~~~~A~~~~~~ 607 (671)
+|.+++++| ++.|+..+|++|+.+|...|+++.|.++++++.+ +.|+. ..++++|++.|++++|.++++.
T Consensus 480 eA~~~~~~~----~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~--~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~ 553 (697)
T PLN03081 480 EAYAMIRRA----PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYG--MGPEKLNNYVVLLNLYNSSGRQAEAAKVVET 553 (697)
T ss_pred HHHHHHHHC----CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC--CCCCCCcchHHHHHHHHhCCCHHHHHHHHHH
Confidence 999999876 5789999999999999999999999999999974 45542 4458889999999999999999
Q ss_pred hhhCC
Q 042546 608 MTSKR 612 (671)
Q Consensus 608 m~~~~ 612 (671)
|.+++
T Consensus 554 m~~~g 558 (697)
T PLN03081 554 LKRKG 558 (697)
T ss_pred HHHcC
Confidence 99864
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.96 E-value=1.8e-24 Score=250.48 Aligned_cols=541 Identities=13% Similarity=0.050 Sum_probs=384.0
Q ss_pred CCccccccccccCccccccccccc--CCCCCCCCCcccccCCCCccc----------cccCCchhHHHHHh----hhcCC
Q 042546 50 TSSHTFYSRFSRLPICYSRLINLI--DPKNPNFRNPMICSYSSEPAM----------EQKESDFTVVSDIF----YKFSD 113 (671)
Q Consensus 50 ~~li~~y~~~g~~~~A~~~f~~~~--~~~~~~~wn~~i~~~~~~~~~----------~~~~p~~~t~~~~l----~~~~~ 113 (671)
..+...|.+.|++++|...|..++ .+.+...|+.+...|.+.+.. ....|+.......+ ...++
T Consensus 333 ~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 412 (899)
T TIGR02917 333 RLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGD 412 (899)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCC
Confidence 456677888888888888888764 334455666666656544321 11223222211111 11111
Q ss_pred chh----HHHHHHhcCCCCCHH-HHHHHHHhcCCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHccCcHHHHHHHHH
Q 042546 114 VND----ISKQLELSGVVFTHE-MVLKVLKNLESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLVD 188 (671)
Q Consensus 114 ~~~----~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~A~~~f~~m~~~~~~~~~~~~~n~li~~~~~~g~~~~a~~l~~ 188 (671)
... +.......+...... .....+.. .|++++|+.+++.+.... .++..+|+.+...+...|++++|.+.|+
T Consensus 413 ~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 489 (899)
T TIGR02917 413 PSEAIADLETAAQLDPELGRADLLLILSYLR-SGQFDKALAAAKKLEKKQ--PDNASLHNLLGAIYLGKGDLAKAREAFE 489 (899)
T ss_pred hHHHHHHHHHHHhhCCcchhhHHHHHHHHHh-cCCHHHHHHHHHHHHHhC--CCCcHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 111 111111111111111 11122222 466666666666665422 2345566666666666666666666666
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHcCCCCChHHHHHHHHHHHHhcCCChhHHHHHHhhcccccChH
Q 042546 189 VMKKKGYGVASHVRNKMTEKFEKEGLESDLEKLKGIFATGSIDNSIEKVASRICKVVRSDIWGDDVERQLRDLNVTFSND 268 (671)
Q Consensus 189 ~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (671)
++.+.. +.+...+..+...+...|+++++....+......+.+.. ....
T Consensus 490 ~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~------------------------------~~~~ 538 (899)
T TIGR02917 490 KALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLR------------------------------AILA 538 (899)
T ss_pred HHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHH------------------------------HHHH
Confidence 665542 223445555566666666666655443322221111110 0001
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 042546 269 LVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSE 348 (671)
Q Consensus 269 ~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~ 348 (671)
+...+.. .|+.++|...|+++.... +.+...+..+...|.+.|++++|.++++.+.+.. +.+..+|..+..++.+
T Consensus 539 l~~~~~~--~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 613 (899)
T TIGR02917 539 LAGLYLR--TGNEEEAVAWLEKAAELN--PQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLA 613 (899)
T ss_pred HHHHHHH--cCCHHHHHHHHHHHHHhC--ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 1111112 389999999999987533 5677888999999999999999999999998753 4578899999999999
Q ss_pred CCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 042546 349 RNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECN 428 (671)
Q Consensus 349 ~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 428 (671)
.|++++|...|+.+.+.. ..+...+..+...+...|+.+ .+...++.+.+. .+.+..++..+...+...|++++|.
T Consensus 614 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~--~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~ 689 (899)
T TIGR02917 614 AGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYA--KAITSLKRALEL-KPDNTEAQIGLAQLLLAAKRTESAK 689 (899)
T ss_pred cCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHH--HHHHHHHHHHhc-CCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 999999999999998643 234566777888888877544 555666665543 3445778999999999999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 042546 429 KILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKE 508 (671)
Q Consensus 429 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 508 (671)
++++.+.+.+ +.+...+..+...+.+.|++++|.+.|+.+...+ |+..++..+...+.+.|+.++|.+.++.+.+ .
T Consensus 690 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~-~ 765 (899)
T TIGR02917 690 KIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLK-T 765 (899)
T ss_pred HHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHH-h
Confidence 9999999876 5678889999999999999999999999998874 5557788899999999999999999999987 3
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH--
Q 042546 509 GTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVD-- 586 (671)
Q Consensus 509 g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~-- 586 (671)
.+.+...+..+...|.+.|+.++|...|+++.+. .+++...++.+...+...|+ .+|++.++++.+. .|+..
T Consensus 766 -~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~--~~~~~~~ 839 (899)
T TIGR02917 766 -HPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKK--APDNAVVLNNLAWLYLELKD-PRALEYAEKALKL--APNIPAI 839 (899)
T ss_pred -CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhh--CCCCcHH
Confidence 3457788999999999999999999999999874 35677889999999999999 8899999998864 45443
Q ss_pred --HHHHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhch
Q 042546 587 --PFIKYVSKSGTSDDAIAFLKGMTSKRFPSMSVVLCLFAAFFQARRHSEAQDLLSKCP 643 (671)
Q Consensus 587 --t~~~~l~~~g~~~~A~~~~~~m~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 643 (671)
++...+.+.|++++|.++++++.+..+.+..++..+..+|.+.|++++|.+++++|.
T Consensus 840 ~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 840 LDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEARKELDKLL 898 (899)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 235566789999999999999999887899999999999999999999999999875
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.96 E-value=2.3e-22 Score=232.87 Aligned_cols=486 Identities=11% Similarity=0.018 Sum_probs=362.9
Q ss_pred CCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHH
Q 042546 141 ESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRNKMTEKFEKEGLESDLEK 220 (671)
Q Consensus 141 ~~~~~~A~~~f~~m~~~~~~~~~~~~~n~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~~~ 220 (671)
.|++++|...|+.+.+..+ .+...+..+...+.+.|++++|...++++.... ..+..++..+...+.+.|+++++..
T Consensus 308 ~g~~~~A~~~~~~~~~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~ 384 (899)
T TIGR02917 308 LGNLEQAYQYLNQILKYAP--NSHQARRLLASIQLRLGRVDEAIATLSPALGLD-PDDPAALSLLGEAYLALGDFEKAAE 384 (899)
T ss_pred cCCHHHHHHHHHHHHHhCC--CChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 5788888888887766322 345677778888889999999999998887664 3467788888888999999888887
Q ss_pred HHHHHHcCCCCChHHHHHHHHHHHHhcCCChhHHH--HHHhhcccccC---hHHHHHHHHHhCCChHHHHHHHHHHHHcC
Q 042546 221 LKGIFATGSIDNSIEKVASRICKVVRSDIWGDDVE--RQLRDLNVTFS---NDLVKFVVDKLGDEPKKALIFFRWAEESG 295 (671)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~---~~~~~~~~~~~~~~~~~A~~~f~~~~~~~ 295 (671)
..+...+....+.. ........+...+.....+. ....+...... ..+...++. .|+.++|.++++.+...
T Consensus 385 ~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~--~~~~~~A~~~~~~~~~~- 460 (899)
T TIGR02917 385 YLAKATELDPENAA-ARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLR--SGQFDKALAAAKKLEKK- 460 (899)
T ss_pred HHHHHHhcCCCCHH-HHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHh--cCCHHHHHHHHHHHHHh-
Confidence 76655444333322 22222222233333322222 22222222111 112222232 48999999999998753
Q ss_pred CCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHH
Q 042546 296 FVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCT 375 (671)
Q Consensus 296 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~ 375 (671)
.+++..+|+.+...+.+.|++++|.+.|+++.+.. +.+...+..+...+...|++++|.+.|+.+.+.. ..+..++.
T Consensus 461 -~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~ 537 (899)
T TIGR02917 461 -QPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAIL 537 (899)
T ss_pred -CCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHH
Confidence 36678899999999999999999999999988753 3356778888889999999999999999998653 33567778
Q ss_pred HHHHHHHhcCcccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 042546 376 FLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSS 455 (671)
Q Consensus 376 ~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~ 455 (671)
.+...+.+.|+. +.+...+..+.... +.+...+..+...|.+.|++++|..+++.+.+.. +.+..+|..+...|.+
T Consensus 538 ~l~~~~~~~~~~--~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 613 (899)
T TIGR02917 538 ALAGLYLRTGNE--EEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLA 613 (899)
T ss_pred HHHHHHHHcCCH--HHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 888888887744 34555666555432 3455678888999999999999999999988654 5677889999999999
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 042546 456 AGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACK 535 (671)
Q Consensus 456 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 535 (671)
.|++++|...|+++.+.. +.+...+..+...+.+.|++++|...++++.+ . .+.+..++..+...+...|++++|.+
T Consensus 614 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~-~~~~~~~~~~l~~~~~~~~~~~~A~~ 690 (899)
T TIGR02917 614 AGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALE-L-KPDNTEAQIGLAQLLLAAKRTESAKK 690 (899)
T ss_pred cCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHh-c-CCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 999999999999988764 34667788888999999999999999999876 2 23457788889999999999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHhcCChHHHHHHHHHhhhCCCC
Q 042546 536 FVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFV-DPFIKYVSKSGTSDDAIAFLKGMTSKRFP 614 (671)
Q Consensus 536 ~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~-~t~~~~l~~~g~~~~A~~~~~~m~~~~~p 614 (671)
+++.+... ..++...+..+...+.+.|++++|.+.++++...+..++. ..+...+.+.|+.++|.+.++.+.+..+.
T Consensus 691 ~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~ 768 (899)
T TIGR02917 691 IAKSLQKQ--HPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPN 768 (899)
T ss_pred HHHHHHhh--CcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 99999764 3456677888888889999999999999998875433321 12356677889999999999998888888
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHhchHh
Q 042546 615 SMSVVLCLFAAFFQARRHSEAQDLLSKCPRY 645 (671)
Q Consensus 615 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 645 (671)
+...+..+...|.+.|++++|.++|+++.+.
T Consensus 769 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 799 (899)
T TIGR02917 769 DAVLRTALAELYLAQKDYDKAIKHYRTVVKK 799 (899)
T ss_pred CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHh
Confidence 8888999999999999999999999887654
No 9
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.86 E-value=2.5e-18 Score=178.29 Aligned_cols=314 Identities=13% Similarity=0.111 Sum_probs=200.5
Q ss_pred hcccccChHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCC---H
Q 042546 260 DLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEME---M 336 (671)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~ 336 (671)
+....+....+........|++++|...|.++.+.. +.+..+|..+...+.+.|++++|..+++.+...+..++ .
T Consensus 30 ~~~~~~~~~y~~g~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~ 107 (389)
T PRK11788 30 KESNRLSRDYFKGLNFLLNEQPDKAIDLFIEMLKVD--PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRL 107 (389)
T ss_pred hhhhhccHHHHHHHHHHhcCChHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHH
Confidence 333334444444444444699999999999998642 45667899999999999999999999999987643222 3
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCCCCH----HHHH
Q 042546 337 ETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTD----AMLN 412 (671)
Q Consensus 337 ~t~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~ 412 (671)
.++..+...|.+.|++++|..+|.++.+. ..++..+++.+...+.+.|+.+ .+.+.++.+.+.+..++. ..+.
T Consensus 108 ~~~~~La~~~~~~g~~~~A~~~~~~~l~~-~~~~~~~~~~la~~~~~~g~~~--~A~~~~~~~~~~~~~~~~~~~~~~~~ 184 (389)
T PRK11788 108 LALQELGQDYLKAGLLDRAEELFLQLVDE-GDFAEGALQQLLEIYQQEKDWQ--KAIDVAERLEKLGGDSLRVEIAHFYC 184 (389)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHcC-CcchHHHHHHHHHHHHHhchHH--HHHHHHHHHHHhcCCcchHHHHHHHH
Confidence 56788899999999999999999999864 2234556666666666665433 334444444443322211 1334
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 042546 413 SVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAG 492 (671)
Q Consensus 413 ~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 492 (671)
.+...+.+.|++++|...|+++.+.. +.+...+..+...|.+.|++++|.++|+++.+.+......+++.+..+|.+.|
T Consensus 185 ~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g 263 (389)
T PRK11788 185 ELAQQALARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALG 263 (389)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcC
Confidence 45556666666666666666666543 23344556666666666666666666666665432222345566666666666
Q ss_pred CHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh---cCCHHHH
Q 042546 493 DLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLV---QRGFKDA 569 (671)
Q Consensus 493 ~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~---~g~~~~A 569 (671)
++++|.+.++++.+ . .|+...+..+...+.+.|++++|..+++++.+. .|+..+++.++..+.. .|+.+++
T Consensus 264 ~~~~A~~~l~~~~~-~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~---~P~~~~~~~l~~~~~~~~~~g~~~~a 337 (389)
T PRK11788 264 DEAEGLEFLRRALE-E--YPGADLLLALAQLLEEQEGPEAAQALLREQLRR---HPSLRGFHRLLDYHLAEAEEGRAKES 337 (389)
T ss_pred CHHHHHHHHHHHHH-h--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh---CcCHHHHHHHHHHhhhccCCccchhH
Confidence 66666666666655 2 345455566666666666666666666666542 4666666666655543 3466666
Q ss_pred HHHHHHHHhCCCCCCH
Q 042546 570 LSLLCLMKDHGFPPFV 585 (671)
Q Consensus 570 ~~l~~~m~~~~~~p~~ 585 (671)
+.++++|.+.++.|+.
T Consensus 338 ~~~~~~~~~~~~~~~p 353 (389)
T PRK11788 338 LLLLRDLVGEQLKRKP 353 (389)
T ss_pred HHHHHHHHHHHHhCCC
Confidence 6666666665555544
No 10
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.85 E-value=5.9e-18 Score=175.49 Aligned_cols=313 Identities=13% Similarity=0.093 Sum_probs=238.6
Q ss_pred CCCCCHHHHHHHHHhcCCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCCH---HH
Q 042546 125 GVVFTHEMVLKVLKNLESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVAS---HV 201 (671)
Q Consensus 125 ~~~~~~~~~~~~l~~~~~~~~~A~~~f~~m~~~~~~~~~~~~~n~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~---~t 201 (671)
...........+.....|++++|...|..+.+..+ .+..+|..+...+.+.|++++|..+++.+...+..++. .+
T Consensus 32 ~~~~~~~y~~g~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~ 109 (389)
T PRK11788 32 SNRLSRDYFKGLNFLLNEQPDKAIDLFIEMLKVDP--ETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLA 109 (389)
T ss_pred hhhccHHHHHHHHHHhcCChHHHHHHHHHHHhcCc--ccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHH
Confidence 33444444444443346899999999999987322 35668888999999999999999999998876432221 23
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHcCCCCChHHHHHHHHHHHHhcCCChhHHHHHHhhcccccChHHHHHHHHHhCCCh
Q 042546 202 RNKMTEKFEKEGLESDLEKLKGIFATGSIDNSIEKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEP 281 (671)
Q Consensus 202 ~~~ll~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (671)
+..+...|.+. |++
T Consensus 110 ~~~La~~~~~~------------------------------------------------------------------g~~ 123 (389)
T PRK11788 110 LQELGQDYLKA------------------------------------------------------------------GLL 123 (389)
T ss_pred HHHHHHHHHHC------------------------------------------------------------------CCH
Confidence 44444444444 678
Q ss_pred HHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhCCChHHHHH
Q 042546 282 KKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEME----METCVKVLGRFSERNMVKEAVD 357 (671)
Q Consensus 282 ~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~t~~~li~~~~~~g~~~~a~~ 357 (671)
++|..+|+.+.+. .+++..+++.++..+.+.|++++|.+.++.+.+.+..++ ...+..+...+.+.|++++|..
T Consensus 124 ~~A~~~~~~~l~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 201 (389)
T PRK11788 124 DRAEELFLQLVDE--GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARA 201 (389)
T ss_pred HHHHHHHHHHHcC--CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 8888888888753 256788999999999999999999999999988653332 2245667778889999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 042546 358 LYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEG 437 (671)
Q Consensus 358 l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 437 (671)
.|+++.+. .|+ +...+..+...|.+.|++++|.++|+++.+.
T Consensus 202 ~~~~al~~--~p~------------------------------------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 243 (389)
T PRK11788 202 LLKKALAA--DPQ------------------------------------CVRASILLGDLALAQGDYAAAIEALERVEEQ 243 (389)
T ss_pred HHHHHHhH--CcC------------------------------------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 99998753 122 1234667778889999999999999999875
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHH
Q 042546 438 GFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAI 517 (671)
Q Consensus 438 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~ 517 (671)
+......+++.++.+|.+.|++++|...++++.+. .|+...+..+...+.+.|++++|.++++++.+ . .|+..++
T Consensus 244 ~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~-~--~P~~~~~ 318 (389)
T PRK11788 244 DPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLR-R--HPSLRGF 318 (389)
T ss_pred ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHH-h--CcCHHHH
Confidence 42222467888999999999999999999999876 46667778899999999999999999999877 3 6888899
Q ss_pred HHHHHHHHh---cCCHHHHHHHHHHHHHhCCCCCCHH
Q 042546 518 DLLVNTYCS---KNRAIDACKFVHNCVREYDLKPWHT 551 (671)
Q Consensus 518 ~~li~~~~~---~g~~~~A~~~~~~m~~~~~~~p~~~ 551 (671)
+.++..+.. .|+.+++..++++|.++ ++.|+..
T Consensus 319 ~~l~~~~~~~~~~g~~~~a~~~~~~~~~~-~~~~~p~ 354 (389)
T PRK11788 319 HRLLDYHLAEAEEGRAKESLLLLRDLVGE-QLKRKPR 354 (389)
T ss_pred HHHHHHhhhccCCccchhHHHHHHHHHHH-HHhCCCC
Confidence 988888775 56899999999999875 5666654
No 11
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.82 E-value=8.5e-15 Score=170.69 Aligned_cols=220 Identities=12% Similarity=0.035 Sum_probs=133.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 042546 412 NSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVA 491 (671)
Q Consensus 412 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 491 (671)
..+...+...|++++|.+.|++..+.. +-+...+..+...|.+.|++++|...++++.+.. +.+...+..+...+...
T Consensus 465 ~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~ 542 (1157)
T PRK11447 465 AQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGS 542 (1157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhC
Confidence 344555667788888888888877654 3355667777888888888888888888877643 22333344444445667
Q ss_pred CCHHHHHHHHHHHHHcCCCCCCHH---------HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 042546 492 GDLDKAADCFQKMVEKEGTSHAGY---------AIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLV 562 (671)
Q Consensus 492 g~~~~a~~~~~~m~~~~g~~p~~~---------~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~ 562 (671)
++.++|...++.+.. ....++.. .+..+...+...|+.++|..+++. ..++...+..+...+.+
T Consensus 543 ~~~~~Al~~l~~l~~-~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~------~p~~~~~~~~La~~~~~ 615 (1157)
T PRK11447 543 DRDRAALAHLNTLPR-AQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ------QPPSTRIDLTLADWAQQ 615 (1157)
T ss_pred CCHHHHHHHHHhCCc-hhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh------CCCCchHHHHHHHHHHH
Confidence 777777777766543 22222111 112334455566666666666551 12233445556666666
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHH----HHHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 042546 563 QRGFKDALSLLCLMKDHGFPPFVDP----FIKYVSKSGTSDDAIAFLKGMTSKRFPSMSVVLCLFAAFFQARRHSEAQDL 638 (671)
Q Consensus 563 ~g~~~~A~~l~~~m~~~~~~p~~~t----~~~~l~~~g~~~~A~~~~~~m~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 638 (671)
.|+.++|++.|++..+. .|+... +...|...|+.++|+..++......+.+...+..+..++.+.|++++|.++
T Consensus 616 ~g~~~~A~~~y~~al~~--~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~ 693 (1157)
T PRK11447 616 RGDYAAARAAYQRVLTR--EPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRT 693 (1157)
T ss_pred cCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHH
Confidence 77777777777766653 344321 244455667777777777766655444555666666667777777777777
Q ss_pred HHhc
Q 042546 639 LSKC 642 (671)
Q Consensus 639 ~~~m 642 (671)
++++
T Consensus 694 ~~~a 697 (1157)
T PRK11447 694 FNRL 697 (1157)
T ss_pred HHHH
Confidence 7664
No 12
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.81 E-value=9.8e-14 Score=161.87 Aligned_cols=340 Identities=12% Similarity=0.041 Sum_probs=208.3
Q ss_pred HHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCC-CHHHHHHHH--------
Q 042546 308 ASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKP-SVNCCTFLL-------- 378 (671)
Q Consensus 308 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p-~~~~~~~ll-------- 378 (671)
-..+...|++++|...|++..+.. +-+...+..+...+.+.|++++|+..|++..+..... +...+..++
T Consensus 276 G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~ 354 (1157)
T PRK11447 276 GLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLL 354 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHH
Confidence 445667788888888888887753 2267778888888888888888888888877543221 212222211
Q ss_pred ----HHHHhcCcccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH--
Q 042546 379 ----RKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFR-- 452 (671)
Q Consensus 379 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~-- 452 (671)
..+.+.| +.+.+...+++..+.. +.+...+..+...|...|++++|++.|++..+.. +.+...+..+...
T Consensus 355 ~~~g~~~~~~g--~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~ 430 (1157)
T PRK11447 355 IQQGDAALKAN--NLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYR 430 (1157)
T ss_pred HHHHHHHHHCC--CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 1223333 3445556666655542 3345566777788888888888888888877653 2333344433333
Q ss_pred ----------------------------------------HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 042546 453 ----------------------------------------LSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAG 492 (671)
Q Consensus 453 ----------------------------------------~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 492 (671)
+...|++++|.+.|++..+.. +-+...+..+...|.+.|
T Consensus 431 ~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G 509 (1157)
T PRK11447 431 QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAG 509 (1157)
T ss_pred hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcC
Confidence 334555555555555555442 113334445555555666
Q ss_pred CHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHH---------HHHHHHHHHHhc
Q 042546 493 DLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHT---------TYEELIKNLLVQ 563 (671)
Q Consensus 493 ~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~---------~~~~li~~~~~~ 563 (671)
++++|...++++.+ .. +.+...+..+...+...|+.++|...++.+... ...++.. .+..+...+...
T Consensus 510 ~~~~A~~~l~~al~-~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~-~~~~~~~~l~~~l~~~~~l~~a~~l~~~ 586 (1157)
T PRK11447 510 QRSQADALMRRLAQ-QK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRA-QWNSNIQELAQRLQSDQVLETANRLRDS 586 (1157)
T ss_pred CHHHHHHHHHHHHH-cC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCch-hcChhHHHHHHHHhhhHHHHHHHHHHHC
Confidence 66666666665544 11 112222222333344555566665555544321 1111111 112334556667
Q ss_pred CCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 042546 564 RGFKDALSLLCLMKDHGFPPFV----DPFIKYVSKSGTSDDAIAFLKGMTSKRFPSMSVVLCLFAAFFQARRHSEAQDLL 639 (671)
Q Consensus 564 g~~~~A~~l~~~m~~~~~~p~~----~t~~~~l~~~g~~~~A~~~~~~m~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 639 (671)
|+.++|+++++. .|+. ..+...+.+.|+.++|+..++++....|.+...+..++.+|...|++++|.+.+
T Consensus 587 G~~~eA~~~l~~------~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l 660 (1157)
T PRK11447 587 GKEAEAEALLRQ------QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQL 660 (1157)
T ss_pred CCHHHHHHHHHh------CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 777777777662 2222 233566678999999999999999988888999999999999999999999999
Q ss_pred HhchHh-----------------hhccHHHHHHHHhhhcC
Q 042546 640 SKCPRY-----------------VRNHADVLNLLYSKKSG 662 (671)
Q Consensus 640 ~~m~~~-----------------~~~~~~~~~l~~~m~~~ 662 (671)
++.+.. .+...++..+|.+....
T Consensus 661 ~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 700 (1157)
T PRK11447 661 AKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQ 700 (1157)
T ss_pred HHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhh
Confidence 986542 13467788888877654
No 13
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.79 E-value=1.6e-13 Score=152.96 Aligned_cols=475 Identities=10% Similarity=0.013 Sum_probs=272.8
Q ss_pred CCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHH
Q 042546 141 ESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRNKMTEKFEKEGLESDLEK 220 (671)
Q Consensus 141 ~~~~~~A~~~f~~m~~~~~~~~~~~~~n~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~~~ 220 (671)
.|++++|+..|+...+..+ -+...+..+...|.+.|+.++|+..+++..+. .|+...|..++..+ ++.+++..
T Consensus 57 ~Gd~~~A~~~l~~Al~~dP--~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~l--dP~n~~~~~~La~i---~~~~kA~~ 129 (987)
T PRK09782 57 NNDEATAIREFEYIHQQVP--DNIPLTLYLAEAYRHFGHDDRARLLLEDQLKR--HPGDARLERSLAAI---PVEVKSVT 129 (987)
T ss_pred CCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHHHHHHh---ccChhHHH
Confidence 5899999999999887444 23677788899999999999999999998877 45655555555333 66666665
Q ss_pred HHH-HHHcCCCCChHHHHHHHH------HHHHhcCCChhHHHHHHhhcccccChHHHHHH-HHHh--CCChHHHHHHHHH
Q 042546 221 LKG-IFATGSIDNSIEKVASRI------CKVVRSDIWGDDVERQLRDLNVTFSNDLVKFV-VDKL--GDEPKKALIFFRW 290 (671)
Q Consensus 221 ~~~-~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~A~~~f~~ 290 (671)
..+ ++...+....+....... .++.+.....+.+. .........+..+... .+.+ .+++++|++.+..
T Consensus 130 ~ye~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~--lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~ 207 (987)
T PRK09782 130 TVEELLAQQKACDAVPTLRCRSEVGQNALRLAQLPVARAQLN--DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNE 207 (987)
T ss_pred HHHHHHHhCCCChhHHHHHHHHhhccchhhhhhHHHHHHHHH--HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHH
Confidence 544 444444444443333332 22333322222332 2222222223333333 2222 3788888888888
Q ss_pred HHHcCCCCCCHHHHHHHHHHHHcc-CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCC-
Q 042546 291 AEESGFVKHDESSYNAMASVLGRE-DCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNK- 368 (671)
Q Consensus 291 ~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~g~~- 368 (671)
+.+.. ..+..-...|-..|.+. ++ +++..++.. .++-|...+..+...|.+.|+.++|.++++++...-..
T Consensus 208 L~k~~--pl~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~ 280 (987)
T PRK09782 208 ARQQN--TLSAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTD 280 (987)
T ss_pred HHhcC--CCCHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCC
Confidence 87643 33444455555566663 55 666666443 22346677777777777777777777777766432111
Q ss_pred CCHHHHHHHH------------------------------HHHHhcCccc------------------------------
Q 042546 369 PSVNCCTFLL------------------------------RKIVVSKQLD------------------------------ 388 (671)
Q Consensus 369 p~~~~~~~ll------------------------------~~~~~~~~~~------------------------------ 388 (671)
|...++--++ ..+.+.+..+
T Consensus 281 ~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 360 (987)
T PRK09782 281 AQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAE 360 (987)
T ss_pred CccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhH
Confidence 2222111111 0111000000
Q ss_pred -------------------------------HHHHHHHHHHHHH------------------------------------
Q 042546 389 -------------------------------MRLFSKVVRVFRE------------------------------------ 401 (671)
Q Consensus 389 -------------------------------~~~~~~~~~~~~~------------------------------------ 401 (671)
...+.++++....
T Consensus 361 ~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~ 440 (987)
T PRK09782 361 ALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSK 440 (987)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhcc
Confidence 0000001000000
Q ss_pred ---------------------------cCC-CC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 042546 402 ---------------------------NGN-VL--TDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAF 451 (671)
Q Consensus 402 ---------------------------~~~-~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~ 451 (671)
.+. ++ +...|..+..++.. ++.++|...+.+.... .|+......+..
T Consensus 441 ~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~ 517 (987)
T PRK09782 441 PLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAY 517 (987)
T ss_pred ccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHH
Confidence 000 11 23333444444443 4555666655555443 244433333344
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHH
Q 042546 452 RLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAI 531 (671)
Q Consensus 452 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~ 531 (671)
.+.+.|++++|...|+++... .|+...+..+...+.+.|+.++|.+.++...+ .. .++...+..+...+.+.|+++
T Consensus 518 al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~-l~-P~~~~l~~~La~~l~~~Gr~~ 593 (987)
T PRK09782 518 QAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQ-RG-LGDNALYWWLHAQRYIPGQPE 593 (987)
T ss_pred HHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHh-cC-CccHHHHHHHHHHHHhCCCHH
Confidence 445677777777777776543 34444555666667777777777777777766 33 222222333333344558888
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH----HHHHHhcCChHHHHHHHHH
Q 042546 532 DACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPF----IKYVSKSGTSDDAIAFLKG 607 (671)
Q Consensus 532 ~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~t~----~~~l~~~g~~~~A~~~~~~ 607 (671)
+|...+++... ..|+...|..+...+.+.|+.++|++.+++..+. .|+.... ...+...|+.++|+..+++
T Consensus 594 eAl~~~~~AL~---l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l--~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~ 668 (987)
T PRK09782 594 LALNDLTRSLN---IAPSANAYVARATIYRQRHNVPAAVSDLRAALEL--EPNNSNYQAALGYALWDSGDIAQSREMLER 668 (987)
T ss_pred HHHHHHHHHHH---hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 88888877764 3566777777777788888888888888877753 5665433 3445677888888888888
Q ss_pred hhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhch
Q 042546 608 MTSKRFPSMSVVLCLFAAFFQARRHSEAQDLLSKCP 643 (671)
Q Consensus 608 m~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 643 (671)
..+..|.+...+..+..++.+.|++++|+..+++..
T Consensus 669 AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al 704 (987)
T PRK09782 669 AHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVI 704 (987)
T ss_pred HHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 877777777778888888888888888888887754
No 14
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.77 E-value=8.2e-14 Score=152.37 Aligned_cols=248 Identities=14% Similarity=0.031 Sum_probs=194.4
Q ss_pred HHHHHHHHHHHcC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 042546 391 LFSKVVRVFRENG-NVL-TDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDH 468 (671)
Q Consensus 391 ~~~~~~~~~~~~~-~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 468 (671)
.+.+.++.....+ ..| +...++.+...+...|++++|...|++..+.. +.+...|..+...+...|++++|...|++
T Consensus 312 ~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~ 390 (615)
T TIGR00990 312 EAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQSYIKRASMNLELGDPDKAEEDFDK 390 (615)
T ss_pred HHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 3444555555443 223 34567888888899999999999999988764 33466888899999999999999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCC
Q 042546 469 MEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKP 548 (671)
Q Consensus 469 m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p 548 (671)
..+.. +.+...|..+...+...|++++|...|++..+ .. +.+...+..+...+.+.|++++|...|++.... .+.
T Consensus 391 al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~-l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~--~P~ 465 (615)
T TIGR00990 391 ALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSID-LD-PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN--FPE 465 (615)
T ss_pred HHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-cC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCC
Confidence 98764 34577888999999999999999999999987 22 234666777888899999999999999998763 333
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-----HHH----HHHHHhcCChHHHHHHHHHhhhCCCCCHHHH
Q 042546 549 WHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFV-----DPF----IKYVSKSGTSDDAIAFLKGMTSKRFPSMSVV 619 (671)
Q Consensus 549 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~-----~t~----~~~l~~~g~~~~A~~~~~~m~~~~~p~~~~~ 619 (671)
+...|+.+...+...|++++|++.|++..+.....+. ..+ ...+...|++++|..++++.....+.+...+
T Consensus 466 ~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~ 545 (615)
T TIGR00990 466 APDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAV 545 (615)
T ss_pred ChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHH
Confidence 4678888899999999999999999998764321111 111 1122346999999999999888777677789
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhchH
Q 042546 620 LCLFAAFFQARRHSEAQDLLSKCPR 644 (671)
Q Consensus 620 ~~l~~~~~~~g~~~~A~~~~~~m~~ 644 (671)
..+..++.+.|++++|.++|++..+
T Consensus 546 ~~la~~~~~~g~~~eAi~~~e~A~~ 570 (615)
T TIGR00990 546 ATMAQLLLQQGDVDEALKLFERAAE 570 (615)
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHH
Confidence 9999999999999999999998643
No 15
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.76 E-value=1.1e-13 Score=131.21 Aligned_cols=429 Identities=13% Similarity=0.087 Sum_probs=282.6
Q ss_pred HHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHcCCCCChHHHHHHHHHH
Q 042546 164 SKTYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRNKMTEKFEKEGLESDLEKLKGIFATGSIDNSIEKVASRICK 243 (671)
Q Consensus 164 ~~~~n~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (671)
+++=|.++. +..+|.+.++.-+|+.|...|+..+...-..+++..+-.+..+-...-.+.|-.|.....-
T Consensus 116 V~~E~nL~k-mIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~--------- 185 (625)
T KOG4422|consen 116 VETENNLLK-MISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGED--------- 185 (625)
T ss_pred hcchhHHHH-HHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccc---------
Confidence 445555555 4557889999999999999999888887777776544332211111111122222111000
Q ss_pred HHhcCCChhHHHHHHhhcccccChHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHccCChHHHHHH
Q 042546 244 VVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKV 323 (671)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 323 (671)
....|.. |.+ |.-+|+.. +....+|.+||.|+|+-...+.|.++
T Consensus 186 --S~~sWK~--------------------------G~v--AdL~~E~~------PKT~et~s~mI~Gl~K~~~~ERA~~L 229 (625)
T KOG4422|consen 186 --STSSWKS--------------------------GAV--ADLLFETL------PKTDETVSIMIAGLCKFSSLERAREL 229 (625)
T ss_pred --ccccccc--------------------------ccH--HHHHHhhc------CCCchhHHHHHHHHHHHHhHHHHHHH
Confidence 0000100 322 33333322 55668888888888888888888888
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCccc--HHHHHHHHHHHHH
Q 042546 324 LDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLD--MRLFSKVVRVFRE 401 (671)
Q Consensus 324 ~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~--~~~~~~~~~~~~~ 401 (671)
+.+-.....+.+..+||.+|.+-.-. ...++..+|....+.||..|+|++++..++.|+.. ...+.+++.+|.+
T Consensus 230 ~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKe 305 (625)
T KOG4422|consen 230 YKEHRAAKGKVYREAFNGLIGASSYS----VGKKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKE 305 (625)
T ss_pred HHHHHHhhheeeHHhhhhhhhHHHhh----ccHHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 88888877788888888888765432 33788888888888888888888888888888655 4677888888888
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHH----CCCC----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 042546 402 NGNVLTDAMLNSVLKALISVGRMGE-CNKILKAMEE----GGFI----ASSNMKSKIAFRLSSAGKKDEANEFMDHMEAS 472 (671)
Q Consensus 402 ~~~~~~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~----~g~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 472 (671)
-|+.|...+|.-+|..+++.++..+ |..+..++.. ..++ .|..-+..-++.|.+..+.+-|.++..-+...
T Consensus 306 iGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg 385 (625)
T KOG4422|consen 306 IGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTG 385 (625)
T ss_pred hCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcC
Confidence 8888888888888888888777643 3344444332 2222 24556667777888888888888877665432
Q ss_pred C----CCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC
Q 042546 473 G----SDVGD---KMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYD 545 (671)
Q Consensus 473 g----~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 545 (671)
. +.|+. .-|..+....|+....+.-..+|+.|.- .-+-|+..+...++++..-.|+++-.-+++.++.. +|
T Consensus 386 ~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP-~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~-~g 463 (625)
T KOG4422|consen 386 DNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVP-SAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKE-YG 463 (625)
T ss_pred CchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-ceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHH-hh
Confidence 1 23332 3356677778888888888888888887 77788888888888888888888888888887765 45
Q ss_pred CCCCHHHHHHHHHHHHhcC-C-------------------HHHH-HHHHHHHHhCCCCCCHHH-HHHHHHhcCChHHHHH
Q 042546 546 LKPWHTTYEELIKNLLVQR-G-------------------FKDA-LSLLCLMKDHGFPPFVDP-FIKYVSKSGTSDDAIA 603 (671)
Q Consensus 546 ~~p~~~~~~~li~~~~~~g-~-------------------~~~A-~~l~~~m~~~~~~p~~~t-~~~~l~~~g~~~~A~~ 603 (671)
..-+...-..++.-+++.. + +-++ ..--.+|.+..+.|.... ....+.+.|+.++|.+
T Consensus 464 ht~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~~~~~t~l~~ia~Ll~R~G~~qkA~e 543 (625)
T KOG4422|consen 464 HTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQDWPATSLNCIAILLLRAGRTQKAWE 543 (625)
T ss_pred hhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccCChhHHHHHHHHHHHcchHHHHHH
Confidence 3333333333444444322 1 1111 111224445555555433 3455679999999999
Q ss_pred HHHHhhhC-C----CCCHHHHHHHHHHHHHcCCHHHHHHHHHhchH
Q 042546 604 FLKGMTSK-R----FPSMSVVLCLFAAFFQARRHSEAQDLLSKCPR 644 (671)
Q Consensus 604 ~~~~m~~~-~----~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 644 (671)
+|..+.++ . .|......-+++.-.+......|...++-|..
T Consensus 544 ~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~ 589 (625)
T KOG4422|consen 544 MLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASA 589 (625)
T ss_pred HHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 99988653 2 24444455677777888889999999888754
No 16
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.74 E-value=6.5e-14 Score=152.59 Aligned_cols=317 Identities=13% Similarity=0.088 Sum_probs=209.1
Q ss_pred CCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHH
Q 042546 278 GDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVD 357 (671)
Q Consensus 278 ~~~~~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~ 357 (671)
.|+.++|+.+++...... +-+...+..+.......|++++|...|+++.... +.+...+..+...+.+.|++++|..
T Consensus 55 ~g~~~~A~~l~~~~l~~~--p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai~ 131 (656)
T PRK15174 55 KDETDVGLTLLSDRVLTA--KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVAD 131 (656)
T ss_pred cCCcchhHHHhHHHHHhC--CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHH
Confidence 499999999999887643 4445666667777788999999999999998863 2256778888899999999999999
Q ss_pred HHHHHHhCCCCCC-HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 042546 358 LYEFAMACKNKPS-VNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEE 436 (671)
Q Consensus 358 l~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 436 (671)
.+++..+. .|+ ...+..+...+...|+.+ .+...++.+...... +...+..+ ..+...|++++|...++.+.+
T Consensus 132 ~l~~Al~l--~P~~~~a~~~la~~l~~~g~~~--eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~ 205 (656)
T PRK15174 132 LAEQAWLA--FSGNSQIFALHLRTLVLMDKEL--QAISLARTQAQEVPP-RGDMIATC-LSFLNKSRLPEDHDLARALLP 205 (656)
T ss_pred HHHHHHHh--CCCcHHHHHHHHHHHHHCCChH--HHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHHHHHHHHHHHHh
Confidence 99999864 443 445555666666666444 333444443332222 22222222 336677777777777777665
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH----HHHHHHHHHHcCCCCC
Q 042546 437 GGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDK----AADCFQKMVEKEGTSH 512 (671)
Q Consensus 437 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~----a~~~~~~m~~~~g~~p 512 (671)
..-.++...+..+...+.+.|++++|...+++..+.. +.+...+..+...+...|+.++ |...|++..+ .. +.
T Consensus 206 ~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~-l~-P~ 282 (656)
T PRK15174 206 FFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQ-FN-SD 282 (656)
T ss_pred cCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHh-hC-CC
Confidence 4322334444555566777777777777777777654 2345566667777777777764 6777777765 21 22
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH---
Q 042546 513 AGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPW-HTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPF--- 588 (671)
Q Consensus 513 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~t~--- 588 (671)
+...+..+...+.+.|++++|...+++.... .|+ ...+..+...|.+.|++++|++.++++.+. .|+...+
T Consensus 283 ~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l---~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~--~P~~~~~~~~ 357 (656)
T PRK15174 283 NVRIVTLYADALIRTGQNEKAIPLLQQSLAT---HPDLPYVRAMYARALRQVGQYTAASDEFVQLARE--KGVTSKWNRY 357 (656)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CccchHHHHH
Confidence 4556677777777777777777777777653 233 345556666777777777777777777653 3443221
Q ss_pred -HHHHHhcCChHHHHHHHHHhhhC
Q 042546 589 -IKYVSKSGTSDDAIAFLKGMTSK 611 (671)
Q Consensus 589 -~~~l~~~g~~~~A~~~~~~m~~~ 611 (671)
...+...|+.++|...|++..+.
T Consensus 358 ~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 358 AAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh
Confidence 23456777777777777777664
No 17
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.74 E-value=6.4e-13 Score=126.15 Aligned_cols=254 Identities=11% Similarity=0.068 Sum_probs=183.6
Q ss_pred HHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHH
Q 042546 145 DEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRNKMTEKFEKEGLESDLEKLKGI 224 (671)
Q Consensus 145 ~~A~~~f~~m~~~~~~~~~~~~~n~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~~~~~~~ 224 (671)
+-|.-+|+..++ +..+|..||.|+|+--..+.|.+++++-.....+.+..+||.+|.+-+-.-
T Consensus 194 ~vAdL~~E~~PK------T~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~----------- 256 (625)
T KOG4422|consen 194 AVADLLFETLPK------TDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSV----------- 256 (625)
T ss_pred cHHHHHHhhcCC------CchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhc-----------
Confidence 345566666554 557899999999999999999999999988888899999999997754331
Q ss_pred HHcCCCCChHHHHHHHHHHHHhcCCChhHHHHHHhhcccccChHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCHHHH
Q 042546 225 FATGSIDNSIEKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSY 304 (671)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~ 304 (671)
..++..+|.. ..+.||..|+
T Consensus 257 -----------------------------------------------------------~K~Lv~EMis-qkm~Pnl~Tf 276 (625)
T KOG4422|consen 257 -----------------------------------------------------------GKKLVAEMIS-QKMTPNLFTF 276 (625)
T ss_pred -----------------------------------------------------------cHHHHHHHHH-hhcCCchHhH
Confidence 1344555554 3458999999
Q ss_pred HHHHHHHHccCChHH----HHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHH-HHHHHHHHH----hCCCCC----CH
Q 042546 305 NAMASVLGREDCIDR----FWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKE-AVDLYEFAM----ACKNKP----SV 371 (671)
Q Consensus 305 ~~li~~~~~~g~~~~----A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~-a~~l~~~m~----~~g~~p----~~ 371 (671)
|++++..++.|+++. |.+++.+|++-|++|...+|..+|..+++.++..+ |..+..+.. ...++| |.
T Consensus 277 NalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~ 356 (625)
T KOG4422|consen 277 NALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDN 356 (625)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchh
Confidence 999999999998865 56788899999999999999999999998887644 444444443 233444 33
Q ss_pred HHHHHHHHHHHhcCcccHHHHHHHHHHHHHcC----CCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 042546 372 NCCTFLLRKIVVSKQLDMRLFSKVVRVFRENG----NVLTD---AMLNSVLKALISVGRMGECNKILKAMEEGGFIASSN 444 (671)
Q Consensus 372 ~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~ 444 (671)
..|...++.|.... |.+++.++...+.... +.|+. .-|.-+....|+....+.-...|+.|.-+-+-|+..
T Consensus 357 ~FF~~AM~Ic~~l~--d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~ 434 (625)
T KOG4422|consen 357 KFFQSAMSICSSLR--DLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQ 434 (625)
T ss_pred HHHHHHHHHHHHhh--hHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCch
Confidence 44555566665443 5556666655554311 22222 245566777788888888888888888777778888
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 042546 445 MKSKIAFRLSSAGKKDEANEFMDHMEASGSDVG 477 (671)
Q Consensus 445 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~ 477 (671)
+...++.+..-.|.++-.-+++.++...|..-+
T Consensus 435 ~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r 467 (625)
T KOG4422|consen 435 TMIHLLRALDVANRLEVIPRIWKDSKEYGHTFR 467 (625)
T ss_pred hHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhh
Confidence 888888888888888888888888887664333
No 18
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.73 E-value=6.7e-13 Score=147.90 Aligned_cols=408 Identities=10% Similarity=-0.026 Sum_probs=243.8
Q ss_pred CCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHH
Q 042546 141 ESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRNKMTEKFEKEGLESDLEK 220 (671)
Q Consensus 141 ~~~~~~A~~~f~~m~~~~~~~~~~~~~n~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~~~ 220 (671)
.|+.++|+.++....... ..+...+..+...+.+.|++++|..+|++..+.. +.+...+..+...+...
T Consensus 28 ~g~~~~A~~~~~~~~~~~--~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~~-------- 96 (765)
T PRK10049 28 AGQDAEVITVYNRYRVHM--QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLADA-------- 96 (765)
T ss_pred cCCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHC--------
Confidence 689999999998876411 2445568888889999999999999999987662 22344454454555444
Q ss_pred HHHHHHcCCCCChHHHHHHHHHHHHhcCCChhHHHHHHhhcccccChHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCC
Q 042546 221 LKGIFATGSIDNSIEKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHD 300 (671)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~ 300 (671)
|+.++|+..+++..+.. +.+
T Consensus 97 ----------------------------------------------------------g~~~eA~~~l~~~l~~~--P~~ 116 (765)
T PRK10049 97 ----------------------------------------------------------GQYDEALVKAKQLVSGA--PDK 116 (765)
T ss_pred ----------------------------------------------------------CCHHHHHHHHHHHHHhC--CCC
Confidence 67777777787776532 445
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 042546 301 ESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRK 380 (671)
Q Consensus 301 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~ 380 (671)
.. |..+...+...|+.++|+..+++..+.. +-+...+..+..++...+..++|++.++.... .|+... -+..
T Consensus 117 ~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~---~p~~~~---~l~~ 188 (765)
T PRK10049 117 AN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAPALGAIDDANL---TPAEKR---DLEA 188 (765)
T ss_pred HH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHHHHHHHhCCC---CHHHHH---HHHH
Confidence 56 8888889999999999999999998863 22455666777888888999999988876553 333100 0000
Q ss_pred HHhcCcccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH---HHHHHHHHHHHHC-CCCCCHH-HH----HHHHH
Q 042546 381 IVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRM---GECNKILKAMEEG-GFIASSN-MK----SKIAF 451 (671)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~---~~A~~~~~~m~~~-g~~~~~~-~~----~~li~ 451 (671)
......++ ..+.......+++ ++|++.++.+.+. ...|+.. .+ ...+.
T Consensus 189 ---------~~~~~~~r--------------~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~ 245 (765)
T PRK10049 189 ---------DAAAELVR--------------LSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLG 245 (765)
T ss_pred ---------HHHHHHHH--------------hhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHH
Confidence 00000000 0000001111222 5566666666643 1122211 11 11123
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--CHHHHHHHHHHHHhcC
Q 042546 452 RLSSAGKKDEANEFMDHMEASGSD-VGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSH--AGYAIDLLVNTYCSKN 528 (671)
Q Consensus 452 ~~~~~g~~~~A~~~~~~m~~~g~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p--~~~~~~~li~~~~~~g 528 (671)
++...|++++|...|+.+.+.+.. |+. .-..+...|...|++++|...|+++.+.....+ .......+..++...|
T Consensus 246 ~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g 324 (765)
T PRK10049 246 ALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESE 324 (765)
T ss_pred HHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcc
Confidence 344557777777777777665421 221 112235567777777777777777654111110 1234455555666777
Q ss_pred CHHHHHHHHHHHHHhCC----------CCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH----HHH
Q 042546 529 RAIDACKFVHNCVREYD----------LKPW---HTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPF----IKY 591 (671)
Q Consensus 529 ~~~~A~~~~~~m~~~~~----------~~p~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~t~----~~~ 591 (671)
++++|..+++.+..... -.|+ ...+..+...+...|+.++|+++++++... .|+...+ ..+
T Consensus 325 ~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~--~P~n~~l~~~lA~l 402 (765)
T PRK10049 325 NYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYN--APGNQGLRIDYASV 402 (765)
T ss_pred cHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence 77777777777664210 1122 123344555666777777777777777653 4554332 344
Q ss_pred HHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhchHhhhccHHHH
Q 042546 592 VSKSGTSDDAIAFLKGMTSKRFPSMSVVLCLFAAFFQARRHSEAQDLLSKCPRYVRNHADVL 653 (671)
Q Consensus 592 l~~~g~~~~A~~~~~~m~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~ 653 (671)
+...|+.++|++.+++.....|.+...+...+..+.+.|++++|+.+++++....+..+.+.
T Consensus 403 ~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~~ 464 (765)
T PRK10049 403 LQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGVQ 464 (765)
T ss_pred HHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 45677777777777777776665666666677777777777777777777765554444443
No 19
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.72 E-value=1.2e-12 Score=143.21 Aligned_cols=416 Identities=9% Similarity=-0.015 Sum_probs=242.2
Q ss_pred CCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHH
Q 042546 141 ESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRNKMTEKFEKEGLESDLEK 220 (671)
Q Consensus 141 ~~~~~~A~~~f~~m~~~~~~~~~~~~~n~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~~~ 220 (671)
.|+++.|+..|+.... ..|+...|..+-.+|.+.|++++|++.++...+.. +.+...+..+-.++...|++++|..
T Consensus 140 ~~~~~~Ai~~y~~al~---~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~lg~~~eA~~ 215 (615)
T TIGR00990 140 NKDFNKAIKLYSKAIE---CKPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDGLGKYADALL 215 (615)
T ss_pred cCCHHHHHHHHHHHHh---cCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 5999999999999876 34788889999999999999999999999998763 2356688888899999999999876
Q ss_pred HHHHHHcCCCCChHHHHHHHHHHHHhcCCChhHHHHHHhhcccc-cChHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC
Q 042546 221 LKGIFATGSIDNSIEKVASRICKVVRSDIWGDDVERQLRDLNVT-FSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKH 299 (671)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~ 299 (671)
-..........+... ....+....... ........+...... .....+..++.... .+.+..-+.... ...+
T Consensus 216 ~~~~~~~~~~~~~~~-~~~~~~~~l~~~-a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~---~~~~ 288 (615)
T TIGR00990 216 DLTASCIIDGFRNEQ-SAQAVERLLKKF-AESKAKEILETKPENLPSVTFVGNYLQSFR--PKPRPAGLEDSN---ELDE 288 (615)
T ss_pred HHHHHHHhCCCccHH-HHHHHHHHHHHH-HHHHHHHHHhcCCCCCCCHHHHHHHHHHcc--CCcchhhhhccc---cccc
Confidence 443332222221111 000011100000 000011111111111 12222222222211 001111111000 0011
Q ss_pred CH-HHHHHHHHH---HHccCChHHHHHHHHHHHHcC-CCC-CHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHH
Q 042546 300 DE-SSYNAMASV---LGREDCIDRFWKVLDEMRSKG-YEM-EMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNC 373 (671)
Q Consensus 300 ~~-~~~~~li~~---~~~~g~~~~A~~~~~~m~~~g-~~p-~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~ 373 (671)
+. ..+..+... ....+++++|.+.|+...+.+ ..| +...|+.+...+...|++++|+..|++..+. .|+.
T Consensus 289 ~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l--~P~~-- 364 (615)
T TIGR00990 289 ETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL--DPRV-- 364 (615)
T ss_pred ccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCc--
Confidence 10 011111100 123467888888888887654 233 3556777777777888888888888877643 2221
Q ss_pred HHHHHHHHHhcCcccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 042546 374 CTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRL 453 (671)
Q Consensus 374 ~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~ 453 (671)
...|..+...+...|++++|...|++..+.. +.+..+|..+...|
T Consensus 365 ----------------------------------~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~ 409 (615)
T TIGR00990 365 ----------------------------------TQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLH 409 (615)
T ss_pred ----------------------------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 1235555566677777777877777776653 34566777777777
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 042546 454 SSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDA 533 (671)
Q Consensus 454 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A 533 (671)
...|++++|...|++..+.. +.+...+..+...+.+.|++++|...|++..+ . .+-+...++.+...+...|++++|
T Consensus 410 ~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~-~-~P~~~~~~~~lg~~~~~~g~~~~A 486 (615)
T TIGR00990 410 FIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIASSMATFRRCKK-N-FPEAPDVYNYYGELLLDQNKFDEA 486 (615)
T ss_pred HHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-h-CCCChHHHHHHHHHHHHccCHHHH
Confidence 77788888888877777653 23455566677777777888888888777765 2 223455677777777777888888
Q ss_pred HHHHHHHHHhCC-CC---CCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH----HHHHHHHhcCChHHHHHH
Q 042546 534 CKFVHNCVREYD-LK---PWHT-TYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVD----PFIKYVSKSGTSDDAIAF 604 (671)
Q Consensus 534 ~~~~~~m~~~~~-~~---p~~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~----t~~~~l~~~g~~~~A~~~ 604 (671)
.+.|+....... .. ++.. .++.....+...|++++|.+++++..+. .|+.. .+...+.+.|++++|.++
T Consensus 487 ~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l--~p~~~~a~~~la~~~~~~g~~~eAi~~ 564 (615)
T TIGR00990 487 IEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALII--DPECDIAVATMAQLLLQQGDVDEALKL 564 (615)
T ss_pred HHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHccCHHHHHHH
Confidence 877777654210 00 0111 1222222333457788888887776653 34442 234555677888888888
Q ss_pred HHHhhhC
Q 042546 605 LKGMTSK 611 (671)
Q Consensus 605 ~~~m~~~ 611 (671)
|++..+.
T Consensus 565 ~e~A~~l 571 (615)
T TIGR00990 565 FERAAEL 571 (615)
T ss_pred HHHHHHH
Confidence 7777653
No 20
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.72 E-value=3.2e-13 Score=147.24 Aligned_cols=253 Identities=12% Similarity=0.033 Sum_probs=184.9
Q ss_pred CChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHH
Q 042546 279 DEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDL 358 (671)
Q Consensus 279 ~~~~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l 358 (671)
|+.++|...|+...... +.+...|..+...+.+.|++++|...++.+....-. +...+..+ ..+.+.|++++|...
T Consensus 124 g~~~~Ai~~l~~Al~l~--P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~eA~~~ 199 (656)
T PRK15174 124 KQYATVADLAEQAWLAF--SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC-LSFLNKSRLPEDHDL 199 (656)
T ss_pred CCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHHHHHHH
Confidence 56677777777665422 344566666777777777777777777766554221 22222222 235666777777776
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 042546 359 YEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGG 438 (671)
Q Consensus 359 ~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 438 (671)
++.+.+ ....++...+..+..++.+.|++++|...|++..+..
T Consensus 200 ~~~~l~-------------------------------------~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~ 242 (656)
T PRK15174 200 ARALLP-------------------------------------FFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG 242 (656)
T ss_pred HHHHHh-------------------------------------cCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 666543 2122333455566788999999999999999999765
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHH----HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCH
Q 042546 439 FIASSNMKSKIAFRLSSAGKKDE----ANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAG 514 (671)
Q Consensus 439 ~~~~~~~~~~li~~~~~~g~~~~----A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~ 514 (671)
+.+...+..+...|.+.|++++ |...|++..+.. +.+...+..+...+.+.|++++|...+++..+ .. +.+.
T Consensus 243 -p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~-l~-P~~~ 318 (656)
T PRK15174 243 -LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLA-TH-PDLP 318 (656)
T ss_pred -CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-hC-CCCH
Confidence 5567888889999999999986 899999998764 33567899999999999999999999999987 32 2235
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 042546 515 YAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTT-YEELIKNLLVQRGFKDALSLLCLMKDH 579 (671)
Q Consensus 515 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~-~~~li~~~~~~g~~~~A~~l~~~m~~~ 579 (671)
..+..+..+|.+.|++++|...|+.+... .|+... +..+..++...|+.++|.+.|++..+.
T Consensus 319 ~a~~~La~~l~~~G~~~eA~~~l~~al~~---~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 319 YVRAMYARALRQVGQYTAASDEFVQLARE---KGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 56777888999999999999999999864 455433 344566788999999999999998764
No 21
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.69 E-value=1.3e-11 Score=134.99 Aligned_cols=196 Identities=14% Similarity=0.009 Sum_probs=146.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC----CCCCHHHHHHHHHHH
Q 042546 449 IAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEG----TSHAGYAIDLLVNTY 524 (671)
Q Consensus 449 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g----~~p~~~~~~~li~~~ 524 (671)
.+-++.+.|+..++++.|+.+...|......+-.++.++|...+++++|..+++.+....+ ..++......|.-+|
T Consensus 298 rl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ 377 (822)
T PRK14574 298 RLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSL 377 (822)
T ss_pred HHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHH
Confidence 4556778888999999999998888665667888888999999999999999998866222 233444467788888
Q ss_pred HhcCCHHHHHHHHHHHHHhCC------------CCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH---
Q 042546 525 CSKNRAIDACKFVHNCVREYD------------LKPWHT-TYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPF--- 588 (671)
Q Consensus 525 ~~~g~~~~A~~~~~~m~~~~~------------~~p~~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~t~--- 588 (671)
...+++++|..+++.+.+... -.||-. .+..++..+.-.|++.+|++.++++... .|...-+
T Consensus 378 ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~--aP~n~~l~~~ 455 (822)
T PRK14574 378 NESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSST--APANQNLRIA 455 (822)
T ss_pred HhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHH
Confidence 889999999999998876211 112222 3344566677889999999999998753 5555433
Q ss_pred -HHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhchHhh
Q 042546 589 -IKYVSKSGTSDDAIAFLKGMTSKRFPSMSVVLCLFAAFFQARRHSEAQDLLSKCPRYV 646 (671)
Q Consensus 589 -~~~l~~~g~~~~A~~~~~~m~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 646 (671)
.+++...|...+|+..++......+.+..+....+.++...|++++|..+.+......
T Consensus 456 ~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~ 514 (822)
T PRK14574 456 LASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISRS 514 (822)
T ss_pred HHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhC
Confidence 5566788999999999977777766677888888888888999999988887764443
No 22
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.69 E-value=2.3e-13 Score=134.82 Aligned_cols=377 Identities=12% Similarity=0.065 Sum_probs=280.4
Q ss_pred HHHHHhcCCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 042546 134 LKVLKNLESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRNKMTEKFEKEG 213 (671)
Q Consensus 134 ~~~l~~~~~~~~~A~~~f~~m~~~~~~~~~~~~~n~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g 213 (671)
.+++.. .|++++|+..++.+.+..+ ..+..|-.+-.++...|+.+.|.+.|.+..+- .|+.+-..+-+.-+.+.
T Consensus 123 aN~~ke-rg~~~~al~~y~~aiel~p--~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka- 196 (966)
T KOG4626|consen 123 ANILKE-RGQLQDALALYRAAIELKP--KFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKA- 196 (966)
T ss_pred HHHHHH-hchHHHHHHHHHHHHhcCc--hhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHh-
Confidence 344454 6788888888888776222 34667777888888888888888887777655 34433332222111111
Q ss_pred ChhHHHHHHHHHHcCCCCChHHHHHHHHHHHHhcCCChhHHHHHHhhcccccChHHHHHHHHHhCCChHHHHHHHHHHHH
Q 042546 214 LESDLEKLKGIFATGSIDNSIEKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEE 293 (671)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~f~~~~~ 293 (671)
.|++++|..-+.+..+
T Consensus 197 ----------------------------------------------------------------~Grl~ea~~cYlkAi~ 212 (966)
T KOG4626|consen 197 ----------------------------------------------------------------EGRLEEAKACYLKAIE 212 (966)
T ss_pred ----------------------------------------------------------------hcccchhHHHHHHHHh
Confidence 1677777776666553
Q ss_pred cCCCCCC-HHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCH
Q 042546 294 SGFVKHD-ESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEME-METCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSV 371 (671)
Q Consensus 294 ~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~ 371 (671)
. .|. .+.|+.|-..+-..|+...|++-|++.... .|+ ...|-.|-..|...+.+++|...|.+.... .|+-
T Consensus 213 ~---qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l--rpn~ 285 (966)
T KOG4626|consen 213 T---QPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL--RPNH 285 (966)
T ss_pred h---CCceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc--CCcc
Confidence 2 444 578999999999999999999999998865 565 667888888888888999998888876632 3321
Q ss_pred HHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 042546 372 NCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAF 451 (671)
Q Consensus 372 ~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~ 451 (671)
.+.+..|...|-..|.+|.|++.+++..+.. +.-...|+.|..
T Consensus 286 ------------------------------------A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~Nlan 328 (966)
T KOG4626|consen 286 ------------------------------------AVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLAN 328 (966)
T ss_pred ------------------------------------hhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHH
Confidence 2335556666788999999999999988754 233678999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCC-HHHHHHHHHHHHhcCCH
Q 042546 452 RLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHA-GYAIDLLVNTYCSKNRA 530 (671)
Q Consensus 452 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~-~~~~~~li~~~~~~g~~ 530 (671)
++-..|++.+|.+.+.+..... .--..+.+.|-..|...|.+++|..+|....+ +.|. ...++.|...|-..|++
T Consensus 329 ALkd~G~V~ea~~cYnkaL~l~-p~hadam~NLgni~~E~~~~e~A~~ly~~al~---v~p~~aaa~nNLa~i~kqqgnl 404 (966)
T KOG4626|consen 329 ALKDKGSVTEAVDCYNKALRLC-PNHADAMNNLGNIYREQGKIEEATRLYLKALE---VFPEFAAAHNNLASIYKQQGNL 404 (966)
T ss_pred HHHhccchHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhccchHHHHHHHHHHh---hChhhhhhhhhHHHHHHhcccH
Confidence 9999999999999999988753 22356788899999999999999999999866 4554 34578899999999999
Q ss_pred HHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHhcCChHHHHHHH
Q 042546 531 IDACKFVHNCVREYDLKPWH-TTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFV----DPFIKYVSKSGTSDDAIAFL 605 (671)
Q Consensus 531 ~~A~~~~~~m~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~----~t~~~~l~~~g~~~~A~~~~ 605 (671)
++|..-+++..+ ++|+. ..|+-|-..|-..|+.+.|++.+.+... +.|.. ..+.+.+...|++.+|+.-+
T Consensus 405 ~~Ai~~Ykealr---I~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~--~nPt~AeAhsNLasi~kDsGni~~AI~sY 479 (966)
T KOG4626|consen 405 DDAIMCYKEALR---IKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQ--INPTFAEAHSNLASIYKDSGNIPEAIQSY 479 (966)
T ss_pred HHHHHHHHHHHh---cCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHh--cCcHHHHHHhhHHHHhhccCCcHHHHHHH
Confidence 999999999874 77764 4788888889999999999999998875 45543 23466778899999999999
Q ss_pred HHhhhCCCCCHHHHHHHHHHHHHcCCHH
Q 042546 606 KGMTSKRFPSMSVVLCLFAAFFQARRHS 633 (671)
Q Consensus 606 ~~m~~~~~p~~~~~~~l~~~~~~~g~~~ 633 (671)
+...+..+.-...|..++.++--.-+|.
T Consensus 480 ~~aLklkPDfpdA~cNllh~lq~vcdw~ 507 (966)
T KOG4626|consen 480 RTALKLKPDFPDAYCNLLHCLQIVCDWT 507 (966)
T ss_pred HHHHccCCCCchhhhHHHHHHHHHhccc
Confidence 9998866544555666665554433333
No 23
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.66 E-value=2.4e-13 Score=134.68 Aligned_cols=313 Identities=12% Similarity=0.042 Sum_probs=229.1
Q ss_pred CChHHHHHHHHHHHHcCCCCCCHHHHHHHHHH-HHccCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhCCChHHHH
Q 042546 279 DEPKKALIFFRWAEESGFVKHDESSYNAMASV-LGREDCIDRFWKVLDEMRSKGYEME-METCVKVLGRFSERNMVKEAV 356 (671)
Q Consensus 279 ~~~~~A~~~f~~~~~~~~~~~~~~~~~~li~~-~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~li~~~~~~g~~~~a~ 356 (671)
|+.+.|...|....+ +.|+.....+-+.- +-..|++++|...+.+..+. .|. .+.|+.|-..+-..|+...|+
T Consensus 164 ~~~~~a~~~~~~alq---lnP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~--qp~fAiawsnLg~~f~~~Gei~~ai 238 (966)
T KOG4626|consen 164 GDLELAVQCFFEALQ---LNPDLYCARSDLGNLLKAEGRLEEAKACYLKAIET--QPCFAIAWSNLGCVFNAQGEIWLAI 238 (966)
T ss_pred CCCcccHHHHHHHHh---cCcchhhhhcchhHHHHhhcccchhHHHHHHHHhh--CCceeeeehhcchHHhhcchHHHHH
Confidence 444455544444332 24444433332222 23346666666666555543 232 445666666666666666666
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 042546 357 DLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEE 436 (671)
Q Consensus 357 ~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 436 (671)
+-|++..+ +.|+- ...|-.|-..|...+.+++|...+.+...
T Consensus 239 q~y~eAvk--ldP~f------------------------------------~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~ 280 (966)
T KOG4626|consen 239 QHYEEAVK--LDPNF------------------------------------LDAYINLGNVYKEARIFDRAVSCYLRALN 280 (966)
T ss_pred HHHHHhhc--CCCcc------------------------------------hHHHhhHHHHHHHHhcchHHHHHHHHHHh
Confidence 66666553 12221 12466677788888899999998887765
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHH
Q 042546 437 GGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVG-DKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGY 515 (671)
Q Consensus 437 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~ 515 (671)
.. +-..+.+..|...|-..|.++-|+..+++..+. +|+ ...|+.|..++-..|++.+|.+.+.+... .. .--..
T Consensus 281 lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~-l~-p~had 355 (966)
T KOG4626|consen 281 LR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL--QPNFPDAYNNLANALKDKGSVTEAVDCYNKALR-LC-PNHAD 355 (966)
T ss_pred cC-CcchhhccceEEEEeccccHHHHHHHHHHHHhc--CCCchHHHhHHHHHHHhccchHHHHHHHHHHHH-hC-CccHH
Confidence 43 344667888888899999999999999999876 565 46799999999999999999999999977 22 22344
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH----HHH
Q 042546 516 AIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPW-HTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDP----FIK 590 (671)
Q Consensus 516 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~t----~~~ 590 (671)
..+.|-..|...|.+++|.++|....+ +.|. ....+-|...|-+.|++++|+..+++..+ +.|+... ...
T Consensus 356 am~NLgni~~E~~~~e~A~~ly~~al~---v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmGn 430 (966)
T KOG4626|consen 356 AMNNLGNIYREQGKIEEATRLYLKALE---VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNMGN 430 (966)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHh---hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhcch
Confidence 678899999999999999999998875 4454 34678888899999999999999999885 7787532 245
Q ss_pred HHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhchH
Q 042546 591 YVSKSGTSDDAIAFLKGMTSKRFPSMSVVLCLFAAFFQARRHSEAQDLLSKCPR 644 (671)
Q Consensus 591 ~l~~~g~~~~A~~~~~~m~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 644 (671)
.|...|+++.|...+.+.+.-.+.=...++.|..+|..+|+..+|+.-+++...
T Consensus 431 t~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLk 484 (966)
T KOG4626|consen 431 TYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALK 484 (966)
T ss_pred HHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHc
Confidence 567889999999999999987776778899999999999999999999998643
No 24
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.64 E-value=4.3e-12 Score=141.52 Aligned_cols=379 Identities=10% Similarity=0.033 Sum_probs=265.6
Q ss_pred HHHHHHHccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHcCCCCChHHHHHHHHHHHHhcC
Q 042546 169 LMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRNKMTEKFEKEGLESDLEKLKGIFATGSIDNSIEKVASRICKVVRSD 248 (671)
Q Consensus 169 ~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (671)
-.+......|+.++|++++.+..... ..+...+..+-.++...
T Consensus 20 d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~------------------------------------ 62 (765)
T PRK10049 20 DWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNL------------------------------------ 62 (765)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHc------------------------------------
Confidence 34566678899999999999887622 33455577776666666
Q ss_pred CChhHHHHHHhhcccccChHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHH
Q 042546 249 IWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMR 328 (671)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 328 (671)
|+.++|..+|+...... +.+...+..+...+.+.|++++|...+++..
T Consensus 63 ------------------------------g~~~~A~~~~~~al~~~--P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l 110 (765)
T PRK10049 63 ------------------------------KQWQNSLTLWQKALSLE--PQNDDYQRGLILTLADAGQYDEALVKAKQLV 110 (765)
T ss_pred ------------------------------CCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 56777777777765432 4557778888999999999999999999998
Q ss_pred HcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCCCCH
Q 042546 329 SKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTD 408 (671)
Q Consensus 329 ~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (671)
+.. +.+.. +..+..++...|+.++|+..++++.+. .|+ +.
T Consensus 111 ~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~--~P~------------------------------------~~ 150 (765)
T PRK10049 111 SGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPR--APQ------------------------------------TQ 150 (765)
T ss_pred HhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHh--CCC------------------------------------CH
Confidence 872 23455 888888999999999999999999863 232 22
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH------HHHHHHHHHHH-----hcCCH---HHHHHHHHHHHHC-C
Q 042546 409 AMLNSVLKALISVGRMGECNKILKAMEEGGFIASS------NMKSKIAFRLS-----SAGKK---DEANEFMDHMEAS-G 473 (671)
Q Consensus 409 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~------~~~~~li~~~~-----~~g~~---~~A~~~~~~m~~~-g 473 (671)
..+..+..++...|..++|.+.++.... .|+. .....++..+. ..+++ ++|++.++.+.+. .
T Consensus 151 ~~~~~la~~l~~~~~~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~ 227 (765)
T PRK10049 151 QYPTEYVQALRNNRLSAPALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWH 227 (765)
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcc
Confidence 2344455566677888888887776553 2221 01112222221 22334 7788899888754 2
Q ss_pred CCCCHH-HHH----HHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q 042546 474 SDVGDK-MWV----SLIKGHCVAGDLDKAADCFQKMVEKEGTS-HAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLK 547 (671)
Q Consensus 474 ~~~~~~-~~~----~li~~~~~~g~~~~a~~~~~~m~~~~g~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~ 547 (671)
..|+.. .+. ..+.++...|+.++|.+.|+.+.+ .+-. |+.. -..+...|...|++++|...|+++.......
T Consensus 228 ~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~-~~~~~P~~a-~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~ 305 (765)
T PRK10049 228 DNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKA-EGQIIPPWA-QRWVASAYLKLHQPEKAQSILTELFYHPETI 305 (765)
T ss_pred cCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhc-cCCCCCHHH-HHHHHHHHHhcCCcHHHHHHHHHHhhcCCCC
Confidence 233321 111 113455677999999999999988 5432 4432 2225678999999999999999987532111
Q ss_pred C--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-----------CCCHH------HHHHHHHhcCChHHHHHHHHHh
Q 042546 548 P--WHTTYEELIKNLLVQRGFKDALSLLCLMKDHGF-----------PPFVD------PFIKYVSKSGTSDDAIAFLKGM 608 (671)
Q Consensus 548 p--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~-----------~p~~~------t~~~~l~~~g~~~~A~~~~~~m 608 (671)
+ ....+..+..++.+.|++++|.++++.+.+... .|+.. .....+...|+.++|++.++++
T Consensus 306 ~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~a 385 (765)
T PRK10049 306 ADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRAREL 385 (765)
T ss_pred CCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 1 134566677788999999999999999986521 23321 1245667899999999999999
Q ss_pred hhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhchHhh-----------------hccHHHHHHHHhhhc
Q 042546 609 TSKRFPSMSVVLCLFAAFFQARRHSEAQDLLSKCPRYV-----------------RNHADVLNLLYSKKS 661 (671)
Q Consensus 609 ~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~-----------------~~~~~~~~l~~~m~~ 661 (671)
....|.+...+..+...+...|++++|++.+++....- +..+++..++..+.+
T Consensus 386 l~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~ 455 (765)
T PRK10049 386 AYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVA 455 (765)
T ss_pred HHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 99888889999999999999999999999999865421 245666666666654
No 25
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.62 E-value=4.8e-10 Score=125.54 Aligned_cols=226 Identities=9% Similarity=-0.006 Sum_probs=178.7
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 042546 406 LTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLI 485 (671)
Q Consensus 406 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li 485 (671)
|+......+...+...|++++|...|+++... +|+...+..+...+.+.|+.++|...+++..+.. ..+...+..+.
T Consensus 507 Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La 583 (987)
T PRK09782 507 PDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLH 583 (987)
T ss_pred CchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHH
Confidence 55444334455556899999999999998654 4556667777888999999999999999998764 22333344444
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcC
Q 042546 486 KGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKP-WHTTYEELIKNLLVQR 564 (671)
Q Consensus 486 ~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g 564 (671)
......|++++|...+++..+ ..|+...+..+..++.+.|+.++|...|.+.... .| +...++.+-..+...|
T Consensus 584 ~~l~~~Gr~~eAl~~~~~AL~---l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l---~Pd~~~a~~nLG~aL~~~G 657 (987)
T PRK09782 584 AQRYIPGQPELALNDLTRSLN---IAPSANAYVARATIYRQRHNVPAAVSDLRAALEL---EPNNSNYQAALGYALWDSG 657 (987)
T ss_pred HHHHhCCCHHHHHHHHHHHHH---hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHCC
Confidence 455567999999999999976 4567888999999999999999999999999863 44 4556677777899999
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHH----HHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 042546 565 GFKDALSLLCLMKDHGFPPFVDPF----IKYVSKSGTSDDAIAFLKGMTSKRFPSMSVVLCLFAAFFQARRHSEAQDLLS 640 (671)
Q Consensus 565 ~~~~A~~l~~~m~~~~~~p~~~t~----~~~l~~~g~~~~A~~~~~~m~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 640 (671)
+.++|++.+++..+. .|+...+ ..++...|++++|+..+++.....+-+..+.........+..+++.|.+-++
T Consensus 658 ~~eeAi~~l~~AL~l--~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~ 735 (987)
T PRK09782 658 DIAQSREMLERAHKG--LPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVG 735 (987)
T ss_pred CHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHH
Confidence 999999999999864 6665433 5566799999999999999998777676777778888888888888888777
Q ss_pred hc
Q 042546 641 KC 642 (671)
Q Consensus 641 ~m 642 (671)
+-
T Consensus 736 r~ 737 (987)
T PRK09782 736 RR 737 (987)
T ss_pred HH
Confidence 63
No 26
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.59 E-value=9.7e-10 Score=115.49 Aligned_cols=485 Identities=9% Similarity=0.037 Sum_probs=274.6
Q ss_pred CCChHHHHHHHHHHhh-cCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHH--HHH-HcCChh
Q 042546 141 ESSPDEARRFFNWVLE-KESERLSSKTYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRNKMTE--KFE-KEGLES 216 (671)
Q Consensus 141 ~~~~~~A~~~f~~m~~-~~~~~~~~~~~n~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~--~~~-~~g~~~ 216 (671)
.+++..|+.+|..... .+...||+.. .+-..+++.|+.+.|+..|.+..+.. | ...++++. -+. ...+.+
T Consensus 177 kkdY~~al~yyk~al~inp~~~aD~rI--gig~Cf~kl~~~~~a~~a~~ralqLd--p--~~v~alv~L~~~~l~~~d~~ 250 (1018)
T KOG2002|consen 177 KKDYRGALKYYKKALRINPACKADVRI--GIGHCFWKLGMSEKALLAFERALQLD--P--TCVSALVALGEVDLNFNDSD 250 (1018)
T ss_pred cccHHHHHHHHHHHHhcCcccCCCccc--hhhhHHHhccchhhHHHHHHHHHhcC--h--hhHHHHHHHHHHHHHccchH
Confidence 5899999999999655 3455566533 23357789999999999999988763 3 22222221 111 111111
Q ss_pred ---HHHH-HHHHHHcCCCCChHHHHHHHHHHHHhcCCChhHHHHHHhhccc---ccChHHHHHHHHHh--CCChHHHHHH
Q 042546 217 ---DLEK-LKGIFATGSIDNSIEKVASRICKVVRSDIWGDDVERQLRDLNV---TFSNDLVKFVVDKL--GDEPKKALIF 287 (671)
Q Consensus 217 ---~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~--~~~~~~A~~~ 287 (671)
.+.. +...|..-+..+.+....+.-.-.-.+......+......... ..+.+.+ .+.++. .|++++|...
T Consensus 251 s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y-~~gRs~Ha~Gd~ekA~~y 329 (1018)
T KOG2002|consen 251 SYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFY-QLGRSYHAQGDFEKAFKY 329 (1018)
T ss_pred HHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHH-HHHHHHHhhccHHHHHHH
Confidence 1111 2223333333333322221111111111111122222222111 0111111 122222 4999999999
Q ss_pred HHHHHHcCCCCCC--HHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCC----ChHHHHHHHHH
Q 042546 288 FRWAEESGFVKHD--ESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERN----MVKEAVDLYEF 361 (671)
Q Consensus 288 f~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g----~~~~a~~l~~~ 361 (671)
|.+.... .+| +..+--+...|.+.|+++.+...|+...... +-+..|...+-..|+..+ ..+.|..+..+
T Consensus 330 Y~~s~k~---~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K 405 (1018)
T KOG2002|consen 330 YMESLKA---DNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGK 405 (1018)
T ss_pred HHHHHcc---CCCCccccccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHH
Confidence 9887642 344 3445567889999999999999999998762 224667777777777665 45666666666
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCccc-HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---
Q 042546 362 AMACKNKPSVNCCTFLLRKIVVSKQLD-MRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEG--- 437 (671)
Q Consensus 362 m~~~g~~p~~~~~~~ll~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--- 437 (671)
..+.- ..|...|-.+-..+-...... ........+.+...+..+.+...|.+...+...|++++|...|+.....
T Consensus 406 ~~~~~-~~d~~a~l~laql~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~ 484 (1018)
T KOG2002|consen 406 VLEQT-PVDSEAWLELAQLLEQTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLE 484 (1018)
T ss_pred HHhcc-cccHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhh
Confidence 65432 334555555555554443222 4556667777778888888999999999999999999999999987754
Q ss_pred CCCCCH------HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 042546 438 GFIASS------NMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKM-WVSLIKGHCVAGDLDKAADCFQKMVEKEGT 510 (671)
Q Consensus 438 g~~~~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~-~~~li~~~~~~g~~~~a~~~~~~m~~~~g~ 510 (671)
...+|. .+--.+...+-..++.+.|.+.|..+.+. .|.-+. |--+...--..+...+|...++........
T Consensus 485 ~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~ 562 (1018)
T KOG2002|consen 485 VANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE--HPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSS 562 (1018)
T ss_pred hcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccC
Confidence 112332 22223445556677888888888888765 344322 333332222335666777777776652333
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh------------cCCHHHHHHHHHHHHh
Q 042546 511 SHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLV------------QRGFKDALSLLCLMKD 578 (671)
Q Consensus 511 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~------------~g~~~~A~~l~~~m~~ 578 (671)
.|+. ++.+-..+.+...+.-|.+-|..+..+....+|..+.-+|-..|.+ .+..++|+++|.+..+
T Consensus 563 np~a--rsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~ 640 (1018)
T KOG2002|consen 563 NPNA--RSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLR 640 (1018)
T ss_pred CcHH--HHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHh
Confidence 3333 4444445666666666666555555443333444443333333322 3345566666666654
Q ss_pred CCCCCCH----HHHHHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhch
Q 042546 579 HGFPPFV----DPFIKYVSKSGTSDDAIAFLKGMTSKRFPSMSVVLCLFAAFFQARRHSEAQDLLSKCP 643 (671)
Q Consensus 579 ~~~~p~~----~t~~~~l~~~g~~~~A~~~~~~m~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 643 (671)
. .|-. .-+..+|+..|++.+|..+|.++.+.......+|..+..+|...|++..|++.|+...
T Consensus 641 ~--dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~l 707 (1018)
T KOG2002|consen 641 N--DPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCL 707 (1018)
T ss_pred c--CcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 2221 1123445666777777777766666433344556666666666777777776666643
No 27
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.55 E-value=4.4e-10 Score=123.17 Aligned_cols=320 Identities=11% Similarity=0.039 Sum_probs=215.8
Q ss_pred CChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHH
Q 042546 279 DEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDL 358 (671)
Q Consensus 279 ~~~~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l 358 (671)
|++++|.++|+.+.+.. +.|...+..++..+.+.++.++|++.++.+... .|+...+-.++..+...++..+|++.
T Consensus 116 gdyd~Aiely~kaL~~d--P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~ 191 (822)
T PRK14574 116 KRWDQALALWQSSLKKD--PTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQA 191 (822)
T ss_pred CCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHH
Confidence 78888999999887643 445677778888888889999999999888776 56666664454444445666668888
Q ss_pred HHHHHhCCCCCC-HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 042546 359 YEFAMACKNKPS-VNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEG 437 (671)
Q Consensus 359 ~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 437 (671)
++++.+. .|+ ...+..+..++ .+.|-...|.++..+-...
T Consensus 192 ~ekll~~--~P~n~e~~~~~~~~l-------------------------------------~~~~~~~~a~~l~~~~p~~ 232 (822)
T PRK14574 192 SSEAVRL--APTSEEVLKNHLEIL-------------------------------------QRNRIVEPALRLAKENPNL 232 (822)
T ss_pred HHHHHHh--CCCCHHHHHHHHHHH-------------------------------------HHcCCcHHHHHHHHhCccc
Confidence 8888864 343 23333333444 4444444444333321100
Q ss_pred CCCCCHHHH------HHHHHH-----HHhcCC---HHHHHHHHHHHHHC-CCCCCH-H----HHHHHHHHHHhcCCHHHH
Q 042546 438 GFIASSNMK------SKIAFR-----LSSAGK---KDEANEFMDHMEAS-GSDVGD-K----MWVSLIKGHCVAGDLDKA 497 (671)
Q Consensus 438 g~~~~~~~~------~~li~~-----~~~~g~---~~~A~~~~~~m~~~-g~~~~~-~----~~~~li~~~~~~g~~~~a 497 (671)
+.+...-+ ..++.. -....+ .+.|+.-++.+... +-.|.. . ...-.+-++...|+..++
T Consensus 233 -f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~v 311 (822)
T PRK14574 233 -VSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADL 311 (822)
T ss_pred -cCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHH
Confidence 00000000 000000 001112 34555555555431 112322 2 222345678899999999
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC----CCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 042546 498 ADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYD----LKPWHTTYEELIKNLLVQRGFKDALSLL 573 (671)
Q Consensus 498 ~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~----~~p~~~~~~~li~~~~~~g~~~~A~~l~ 573 (671)
.+.|+.+.. .+.+....+--++.++|...++.++|..+|.++....+ ..++......|.-+|...+++++|..++
T Consensus 312 i~~y~~l~~-~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l 390 (822)
T PRK14574 312 IKEYEAMEA-EGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFA 390 (822)
T ss_pred HHHHHHhhh-cCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHH
Confidence 999999998 78765556888999999999999999999999865322 2334444678999999999999999999
Q ss_pred HHHHhCCC-----------CCC--HHHH----HHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 042546 574 CLMKDHGF-----------PPF--VDPF----IKYVSKSGTSDDAIAFLKGMTSKRFPSMSVVLCLFAAFFQARRHSEAQ 636 (671)
Q Consensus 574 ~~m~~~~~-----------~p~--~~t~----~~~l~~~g~~~~A~~~~~~m~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 636 (671)
+.+.+... .|+ .... +..+.-.|++.+|++.++++....|-|......+.+.+...|.+.+|+
T Consensus 391 ~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~ 470 (822)
T PRK14574 391 VNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAE 470 (822)
T ss_pred HHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHH
Confidence 99987311 122 2222 455678999999999999999988889999999999999999999999
Q ss_pred HHHHhch
Q 042546 637 DLLSKCP 643 (671)
Q Consensus 637 ~~~~~m~ 643 (671)
+.++...
T Consensus 471 ~~~k~a~ 477 (822)
T PRK14574 471 QELKAVE 477 (822)
T ss_pred HHHHHHh
Confidence 9997643
No 28
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.49 E-value=9.6e-11 Score=121.30 Aligned_cols=243 Identities=14% Similarity=0.143 Sum_probs=165.1
Q ss_pred CCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHcCCCCChHHHH
Q 042546 158 ESERLSSKTYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRNKMTEKFEKEGLESDLEKLKGIFATGSIDNSIEKV 237 (671)
Q Consensus 158 ~~~~~~~~~~n~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 237 (671)
.|+.||-+||..+|.-||..|+.+.|- +|.-|.-.....+...|+.++.+....++.+.+
T Consensus 19 ~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enp------------------- 78 (1088)
T KOG4318|consen 19 SGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENP------------------- 78 (1088)
T ss_pred hcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCC-------------------
Confidence 778888899999999999999888888 888888777777888888888887776543321
Q ss_pred HHHHHHHHhcCCChhHHHHHHhhcccccChHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHccCCh
Q 042546 238 ASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCI 317 (671)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 317 (671)
-.|...+|+.|..+|.+.|++
T Consensus 79 -----------------------------------------------------------kep~aDtyt~Ll~ayr~hGDl 99 (1088)
T KOG4318|consen 79 -----------------------------------------------------------KEPLADTYTNLLKAYRIHGDL 99 (1088)
T ss_pred -----------------------------------------------------------CCCchhHHHHHHHHHHhccch
Confidence 167788899999999998886
Q ss_pred HH---HHHHHHHHH----HcCC-----------------CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhC-CCCCCHH
Q 042546 318 DR---FWKVLDEMR----SKGY-----------------EMEMETCVKVLGRFSERNMVKEAVDLYEFAMAC-KNKPSVN 372 (671)
Q Consensus 318 ~~---A~~~~~~m~----~~g~-----------------~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~-g~~p~~~ 372 (671)
.. ..+.+.... ..|+ -||.. .++......|-++.++++...+... -..|..+
T Consensus 100 i~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~---n~illlv~eglwaqllkll~~~Pvsa~~~p~~v 176 (1088)
T KOG4318|consen 100 ILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAE---NAILLLVLEGLWAQLLKLLAKVPVSAWNAPFQV 176 (1088)
T ss_pred HHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHH---HHHHHHHHHHHHHHHHHHHhhCCcccccchHHH
Confidence 54 222111111 1121 12221 2233333445555555555544311 1112111
Q ss_pred HHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 042546 373 CCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFR 452 (671)
Q Consensus 373 ~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~ 452 (671)
.++- ...+..-.+++......-.-.|+..+|.+++++-...|+++.|..++.+|.+.|++.+.+-|-.|+-+
T Consensus 177 ----fLrq----nv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g 248 (1088)
T KOG4318|consen 177 ----FLRQ----NVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG 248 (1088)
T ss_pred ----HHHH----hccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc
Confidence 1222 11222223344443333222689999999999999999999999999999999999888877777766
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 042546 453 LSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGD 493 (671)
Q Consensus 453 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 493 (671)
.++..-+..+..-|.+.|+.|+..|+..-+-.+..+|.
T Consensus 249 ---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 249 ---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred ---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 88888999999999999999999999877777766544
No 29
>PF13041 PPR_2: PPR repeat family
Probab=99.45 E-value=1.9e-13 Score=93.83 Aligned_cols=50 Identities=26% Similarity=0.217 Sum_probs=48.8
Q ss_pred CCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 042546 162 LSSKTYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRNKMTEKFEK 211 (671)
Q Consensus 162 ~~~~~~n~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~ 211 (671)
||+++||++|++|++.|++++|+++|++|.+.|+.||..||+++|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 89999999999999999999999999999999999999999999999975
No 30
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.42 E-value=6.8e-10 Score=114.15 Aligned_cols=280 Identities=9% Similarity=0.012 Sum_probs=203.7
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcccHHHHH
Q 042546 314 EDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFS 393 (671)
Q Consensus 314 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~ 393 (671)
.|+++.|.+.+....+..-.| ...|.....+..+.|+++.|.+.+.++.+. .|+...+
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p-~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~------------------- 154 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQP-VVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLP------------------- 154 (398)
T ss_pred CCCHHHHHHHHHHHHhcccch-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHH-------------------
Confidence 588888888887765542111 223333344447888999999999888752 2322111
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 042546 394 KVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASG 473 (671)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 473 (671)
..-.....+...|+++.|...++++.+.. +-+......+...|.+.|++++|.+++..+.+.+
T Consensus 155 ----------------~~l~~a~l~l~~g~~~~Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~ 217 (398)
T PRK10747 155 ----------------VEITRVRIQLARNENHAARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAH 217 (398)
T ss_pred ----------------HHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcC
Confidence 01122456788899999999999998776 5567788889999999999999999999999877
Q ss_pred CCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 042546 474 SDVGD-------KMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDL 546 (671)
Q Consensus 474 ~~~~~-------~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 546 (671)
..++. .+|..++.......+.+...++++...+ ..+.+......+...+...|+.++|.+++.+..++
T Consensus 218 ~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~--~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--- 292 (398)
T PRK10747 218 VGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSR--KTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--- 292 (398)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCH--HHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---
Confidence 54322 2344445544555666777777777654 23457778888999999999999999999988763
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH----HHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHH
Q 042546 547 KPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPF----IKYVSKSGTSDDAIAFLKGMTSKRFPSMSVVLCL 622 (671)
Q Consensus 547 ~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~t~----~~~l~~~g~~~~A~~~~~~m~~~~~p~~~~~~~l 622 (671)
.||.. -.++.+....++.+++++..+...+. .|+...+ ...+.+.|++++|.+.|+...+.. |+...|..+
T Consensus 293 ~~~~~--l~~l~~~l~~~~~~~al~~~e~~lk~--~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~-P~~~~~~~L 367 (398)
T PRK10747 293 QYDER--LVLLIPRLKTNNPEQLEKVLRQQIKQ--HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQR-PDAYDYAWL 367 (398)
T ss_pred CCCHH--HHHHHhhccCCChHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCHHHHHHH
Confidence 44442 12334444569999999999988864 5665433 566678999999999999988754 788888899
Q ss_pred HHHHHHcCCHHHHHHHHHhc
Q 042546 623 FAAFFQARRHSEAQDLLSKC 642 (671)
Q Consensus 623 ~~~~~~~g~~~~A~~~~~~m 642 (671)
..++.+.|+.++|.+++++-
T Consensus 368 a~~~~~~g~~~~A~~~~~~~ 387 (398)
T PRK10747 368 ADALDRLHKPEEAAAMRRDG 387 (398)
T ss_pred HHHHHHcCCHHHHHHHHHHH
Confidence 99999999999999999874
No 31
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.41 E-value=4e-08 Score=103.70 Aligned_cols=77 Identities=9% Similarity=0.097 Sum_probs=40.3
Q ss_pred ChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHHcCChhHHHH
Q 042546 143 SPDEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLVDVMKKKGYG--VASHVRNKMTEKFEKEGLESDLEK 220 (671)
Q Consensus 143 ~~~~A~~~f~~m~~~~~~~~~~~~~n~li~~~~~~g~~~~a~~l~~~m~~~g~~--p~~~t~~~ll~~~~~~g~~~~~~~ 220 (671)
.+..+..++...-...+ .|++.-|.|-..|.-.|++..++.+...+...-.. .-...|-.+-++|-..|+++.|..
T Consensus 251 s~~~~~~ll~~ay~~n~--~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~ 328 (1018)
T KOG2002|consen 251 SYKKGVQLLQRAYKENN--ENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFK 328 (1018)
T ss_pred HHHHHHHHHHHHHhhcC--CCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHH
Confidence 34455555555544333 33445555666666666666666666666544210 012234455556666666666654
Q ss_pred H
Q 042546 221 L 221 (671)
Q Consensus 221 ~ 221 (671)
.
T Consensus 329 y 329 (1018)
T KOG2002|consen 329 Y 329 (1018)
T ss_pred H
Confidence 3
No 32
>PF13041 PPR_2: PPR repeat family
Probab=99.41 E-value=6e-13 Score=91.33 Aligned_cols=50 Identities=18% Similarity=0.292 Sum_probs=40.8
Q ss_pred CCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 042546 299 HDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSE 348 (671)
Q Consensus 299 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~ 348 (671)
||+++||++|.+|++.|++++|+++|++|.+.|++||..||++||++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 67888888888888888888888888888888888888888888887764
No 33
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.40 E-value=4.1e-12 Score=124.69 Aligned_cols=224 Identities=16% Similarity=0.117 Sum_probs=93.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 042546 413 SVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAG 492 (671)
Q Consensus 413 ~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 492 (671)
.+...+-..++.++|.+.++++...+. -+...+..++.. ...+++++|.++++..-+. .++...+..++..+.+.+
T Consensus 49 ~~a~La~~~~~~~~A~~ay~~l~~~~~-~~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~ 124 (280)
T PF13429_consen 49 LLADLAWSLGDYDEAIEAYEKLLASDK-ANPQDYERLIQL-LQDGDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLG 124 (280)
T ss_dssp -------------------------------------------------------------------------H-HHHTT
T ss_pred ccccccccccccccccccccccccccc-cccccccccccc-ccccccccccccccccccc--ccccchhhHHHHHHHHHh
Confidence 333444556777777777777776542 245556666665 5777788888777766544 345566677777778888
Q ss_pred CHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHH
Q 042546 493 DLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKP-WHTTYEELIKNLLVQRGFKDALS 571 (671)
Q Consensus 493 ~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~ 571 (671)
+++++.++++..........+...|..+...+.+.|+.++|.+.+++..+. .| |....+.++..+...|+.+++.+
T Consensus 125 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~---~P~~~~~~~~l~~~li~~~~~~~~~~ 201 (280)
T PF13429_consen 125 DYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALEL---DPDDPDARNALAWLLIDMGDYDEARE 201 (280)
T ss_dssp -HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH----TT-HHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHCCChHHHHH
Confidence 888888888877653344566777777777788888888888888887763 34 35567777777778888888777
Q ss_pred HHHHHHhCC-CCCCH-HHHHHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhch
Q 042546 572 LLCLMKDHG-FPPFV-DPFIKYVSKSGTSDDAIAFLKGMTSKRFPSMSVVLCLFAAFFQARRHSEAQDLLSKCP 643 (671)
Q Consensus 572 l~~~m~~~~-~~p~~-~t~~~~l~~~g~~~~A~~~~~~m~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 643 (671)
+++...+.. -.|.. ..+..++...|+.++|..++++..+..+.|......+.+++.+.|+.++|.++.++..
T Consensus 202 ~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 202 ALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp HHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT----------------
T ss_pred HHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 777766542 12222 3456666777888888888888777676788888888888888888888888877654
No 34
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.39 E-value=1.9e-09 Score=111.92 Aligned_cols=500 Identities=13% Similarity=0.100 Sum_probs=249.0
Q ss_pred ccccCCchhHHHHHhhhcCCchh-----HHHHHHhcCCCCCHHHHHHHHHhc--CCChHHHHHHHHHHhhcCCCCCCHHH
Q 042546 94 MEQKESDFTVVSDIFYKFSDVND-----ISKQLELSGVVFTHEMVLKVLKNL--ESSPDEARRFFNWVLEKESERLSSKT 166 (671)
Q Consensus 94 ~~~~~p~~~t~~~~l~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~A~~~f~~m~~~~~~~~~~~~ 166 (671)
..|+.|+.+||.+++...+..++ +..-|+..+..+..+.+..+..+- .++.+.|. .|...+
T Consensus 18 ~~gi~PnRvtyqsLiarYc~~gdieaatif~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk------------ep~aDt 85 (1088)
T KOG4318|consen 18 ISGILPNRVTYQSLIARYCTKGDIEAATIFPFMEIKSLPVREGVFRGLVASHKEANDAENPK------------EPLADT 85 (1088)
T ss_pred HhcCCCchhhHHHHHHHHcccCCCccccchhhhhcccccccchhHHHHHhcccccccccCCC------------CCchhH
Confidence 45889999999999988665444 334455555555555554444331 23333332 277778
Q ss_pred HHHHHHHHHccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHcCCCCChHHHHHHHHHHHHh
Q 042546 167 YNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRNKMTEKFEKEGLESDLEKLKGIFATGSIDNSIEKVASRICKVVR 246 (671)
Q Consensus 167 ~n~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (671)
|+.+..+|.++|++.. |+...+ -...++..+...|--.....+...+.-. +...+.....+...+.
T Consensus 86 yt~Ll~ayr~hGDli~----fe~veq--------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~--p~~lpda~n~illlv~ 151 (1088)
T KOG4318|consen 86 YTNLLKAYRIHGDLIL----FEVVEQ--------DLESINQSFSDHGVGSPERWFLMKIHCC--PHSLPDAENAILLLVL 151 (1088)
T ss_pred HHHHHHHHHhccchHH----HHHHHH--------HHHHHHhhhhhhccCcHHHHHHhhcccC--cccchhHHHHHHHHHH
Confidence 8888888888888765 222221 1112222222222222222111111111 1111111111211221
Q ss_pred cCCChhHHHHHHhhcccccChHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHccCChHHHHHHHHH
Q 042546 247 SDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDE 326 (671)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 326 (671)
.+-|.. ....+.+.+..-.+.-+..+++.+.-...-..++.+....-.+ .|+..+|.+++..-.-+|+.+.|..++.+
T Consensus 152 eglwaq-llkll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e-~~~s~~l~a~l~~alaag~~d~Ak~ll~e 229 (1088)
T KOG4318|consen 152 EGLWAQ-LLKLLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVE-APTSETLHAVLKRALAAGDVDGAKNLLYE 229 (1088)
T ss_pred HHHHHH-HHHHHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhc-CCChHHHHHHHHHHHhcCchhhHHHHHHH
Confidence 111111 1111112222111111111344443333344444444443233 69999999999999999999999999999
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCCC
Q 042546 327 MRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVL 406 (671)
Q Consensus 327 m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (671)
|+++|++.+..-|-.|+-+ .++...+..+..-|.+.|+.|+..|+...+-.+.+.+... ..+.|...
T Consensus 230 mke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~----------~~~e~sq~ 296 (1088)
T KOG4318|consen 230 MKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTK----------YGEEGSQL 296 (1088)
T ss_pred HHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhh----------hcccccch
Confidence 9999999988877777766 8889999999999999999999999988777766644211 01122221
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHH------------HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--
Q 042546 407 TDAMLNSVLKALISVGRMGECNKIL------------KAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEAS-- 472 (671)
Q Consensus 407 ~~~~~~~li~~~~~~g~~~~A~~~~------------~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-- 472 (671)
+ ..+++-+..-+-.| ..|.+.+ .+..-.|+.....+|...+... ..|.-++..++-..|..-
T Consensus 297 ~-hg~tAavrsaa~rg--~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~l~-hQgk~e~veqlvg~l~npt~ 372 (1088)
T KOG4318|consen 297 A-HGFTAAVRSAACRG--LLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEKLR-HQGKGEEVEQLVGQLLNPTL 372 (1088)
T ss_pred h-hhhhHHHHHHHhcc--cHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHHHH-HcCCCchHHHHHhhhcCCcc
Confidence 1 11222222222222 1111111 1111123333334444333322 245555555554444311
Q ss_pred CCCC-CHHHHHHHHHHHHhc----------------------CCHHHHHHHHHHHHHcCC---------------CCC--
Q 042546 473 GSDV-GDKMWVSLIKGHCVA----------------------GDLDKAADCFQKMVEKEG---------------TSH-- 512 (671)
Q Consensus 473 g~~~-~~~~~~~li~~~~~~----------------------g~~~~a~~~~~~m~~~~g---------------~~p-- 512 (671)
...+ ++-.|..++.-|.+. .+..+..++.....+..+ ..|
T Consensus 373 r~s~~~V~a~~~~lrqyFrr~e~~~~~~i~~~~qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~Eler~he~~~ 452 (1088)
T KOG4318|consen 373 RDSGQNVDAFGALLRQYFRRIERHICSRIYYAGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTELERSHEPWP 452 (1088)
T ss_pred ccCcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhcccccch
Confidence 0111 122233333322221 112222222221111000 000
Q ss_pred -----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-----C
Q 042546 513 -----AGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGF-----P 582 (671)
Q Consensus 513 -----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~-----~ 582 (671)
-...-+.++..++..-+..++...-+..... .-| ..|..||+-+..+...+.|..+..+...... .
T Consensus 453 ~~~h~irdi~~ql~l~l~se~n~lK~l~~~ekye~~--lf~--g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~ 528 (1088)
T KOG4318|consen 453 LIAHLIRDIANQLHLTLNSEYNKLKILCDEEKYEDL--LFA--GLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDL 528 (1088)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--Hhh--hHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhccc
Confidence 0111234444445444444444333333221 111 4677788888888888888887777653221 1
Q ss_pred CCHHHHHHHHHhcCChHHHHHHHHHhhhC--CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHhc
Q 042546 583 PFVDPFIKYVSKSGTSDDAIAFLKGMTSK--RFPS-MSVVLCLFAAFFQARRHSEAQDLLSKC 642 (671)
Q Consensus 583 p~~~t~~~~l~~~g~~~~A~~~~~~m~~~--~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m 642 (671)
|....+.+.+.+.+...++..+++++.+. +.|+ ..+.-.+++..+..|..+...++++-.
T Consensus 529 ~~m~~l~dLL~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~l 591 (1088)
T KOG4318|consen 529 PLMTSLQDLLQRLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADIL 591 (1088)
T ss_pred HhHHHHHHHHHHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHH
Confidence 22233456667778888888888777763 2232 334445566666677777666666543
No 35
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.38 E-value=2.1e-09 Score=111.12 Aligned_cols=284 Identities=13% Similarity=0.008 Sum_probs=197.7
Q ss_pred HccCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcccHH
Q 042546 312 GREDCIDRFWKVLDEMRSKGYEMEM-ETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMR 390 (671)
Q Consensus 312 ~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~ 390 (671)
...|+++.|.+.+....+. .|+. ..+-....+..+.|+.+.|.+.+.+..+.. |+..
T Consensus 95 ~~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--p~~~------------------ 152 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA--GNDN------------------ 152 (409)
T ss_pred HhCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CcCc------------------
Confidence 3568899999988877665 3543 333444566778899999999988876421 2210
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 042546 391 LFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHME 470 (671)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 470 (671)
....-.....+...|+++.|...++.+.+.. +-+...+..+...|.+.|++++|.+++..+.
T Consensus 153 -----------------l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~ 214 (409)
T TIGR00540 153 -----------------ILVEIARTRILLAQNELHAARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMA 214 (409)
T ss_pred -----------------hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 0112223556678899999999999999876 4567788899999999999999999999999
Q ss_pred HCCCCCCHHHHH-HHHHHH---HhcCCHHHHHHHHHHHHHcCC---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 042546 471 ASGSDVGDKMWV-SLIKGH---CVAGDLDKAADCFQKMVEKEG---TSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVRE 543 (671)
Q Consensus 471 ~~g~~~~~~~~~-~li~~~---~~~g~~~~a~~~~~~m~~~~g---~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 543 (671)
+.+.. +...+. .-..++ ...+..+++.+.+..+.+ .. .+.+...+..+...+...|+.++|.+++++..++
T Consensus 215 k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~-~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~ 292 (409)
T TIGR00540 215 KAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWK-NQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK 292 (409)
T ss_pred HcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH-HCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh
Confidence 88754 333332 111221 222333333445555544 21 1237788889999999999999999999999874
Q ss_pred CCCCCCHHHH-HHHHHH--HHhcCCHHHHHHHHHHHHhCCCCCCHH--HH----HHHHHhcCChHHHHHHHHHhhh-CCC
Q 042546 544 YDLKPWHTTY-EELIKN--LLVQRGFKDALSLLCLMKDHGFPPFVD--PF----IKYVSKSGTSDDAIAFLKGMTS-KRF 613 (671)
Q Consensus 544 ~~~~p~~~~~-~~li~~--~~~~g~~~~A~~l~~~m~~~~~~p~~~--t~----~~~l~~~g~~~~A~~~~~~m~~-~~~ 613 (671)
.||.... ..++.. ....++.+.+++.+++..+. .|+.. .+ ...+.+.|++++|.++|+.... ...
T Consensus 293 ---~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~--~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~ 367 (409)
T TIGR00540 293 ---LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN--VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQ 367 (409)
T ss_pred ---CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh--CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcC
Confidence 3443311 012222 33467888899999887754 56665 44 5556789999999999996433 234
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHhc
Q 042546 614 PSMSVVLCLFAAFFQARRHSEAQDLLSKC 642 (671)
Q Consensus 614 p~~~~~~~l~~~~~~~g~~~~A~~~~~~m 642 (671)
|+...+..+...+.+.|+.++|.+++++-
T Consensus 368 p~~~~~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 368 LDANDLAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 88888999999999999999999999873
No 36
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.38 E-value=1.7e-07 Score=98.40 Aligned_cols=468 Identities=12% Similarity=0.057 Sum_probs=295.9
Q ss_pred CCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHH
Q 042546 141 ESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRNKMTEKFEKEGLESDLEK 220 (671)
Q Consensus 141 ~~~~~~A~~~f~~m~~~~~~~~~~~~~n~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~~~ 220 (671)
.|+.++|.+++.++.++.+ .+...|-+|-..|-+.|+.+++...+--.-.. .+-|..-|..+-....+.|.++.|.-
T Consensus 152 rg~~eeA~~i~~EvIkqdp--~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL-~p~d~e~W~~ladls~~~~~i~qA~~ 228 (895)
T KOG2076|consen 152 RGDLEEAEEILMEVIKQDP--RNPIAYYTLGEIYEQRGDIEKALNFWLLAAHL-NPKDYELWKRLADLSEQLGNINQARY 228 (895)
T ss_pred hCCHHHHHHHHHHHHHhCc--cchhhHHHHHHHHHHcccHHHHHHHHHHHHhc-CCCChHHHHHHHHHHHhcccHHHHHH
Confidence 5999999999999988555 67789999999999999999988765444333 23366788888888888888877764
Q ss_pred HHHHHHcCCCCChHHHHHHHHHHHHhcCCChhHHHHHHhhcccccChHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCC
Q 042546 221 LKGIFATGSIDNSIEKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHD 300 (671)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~ 300 (671)
...-.-++.+.+. .. -..-...+-+. |+...|..-|.++-.-.+ +.|
T Consensus 229 cy~rAI~~~p~n~-~~-----------------------------~~ers~L~~~~--G~~~~Am~~f~~l~~~~p-~~d 275 (895)
T KOG2076|consen 229 CYSRAIQANPSNW-EL-----------------------------IYERSSLYQKT--GDLKRAMETFLQLLQLDP-PVD 275 (895)
T ss_pred HHHHHHhcCCcch-HH-----------------------------HHHHHHHHHHh--ChHHHHHHHHHHHHhhCC-chh
Confidence 3322212111111 00 00001111111 788888888888764221 112
Q ss_pred H----HHHHHHHHHHHccCChHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHH-
Q 042546 301 E----SSYNAMASVLGREDCIDRFWKVLDEMRSKG-YEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCC- 374 (671)
Q Consensus 301 ~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~- 374 (671)
. ..--.++..|...++-+.|.+.++.....+ -..+...++.++..+.+...++.|......+......+|..-+
T Consensus 276 ~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~ 355 (895)
T KOG2076|consen 276 IERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWD 355 (895)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhh
Confidence 2 222234556667777788888888776632 2335567778888888888888888888877763333332222
Q ss_pred ---------------------HHHH--HHHHhcCcccHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHhcCCHHHHHH
Q 042546 375 ---------------------TFLL--RKIVVSKQLDMRLFSKVVRVFRENGNV--LTDAMLNSVLKALISVGRMGECNK 429 (671)
Q Consensus 375 ---------------------~~ll--~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~ 429 (671)
..=+ .+.|..+..+.+..+.+.......... -+...|.-+..+|...|++.+|..
T Consensus 356 ~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~ 435 (895)
T KOG2076|consen 356 TDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALR 435 (895)
T ss_pred hhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHH
Confidence 1000 111222222344555666666666633 345578999999999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHH--
Q 042546 430 ILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGD-KMWVSLIKGHCVAGDLDKAADCFQKMVE-- 506 (671)
Q Consensus 430 ~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~-- 506 (671)
+|..+.....--+...|--+..+|-..|..++|.+.|+..... .|+. -.-.+|-..+-+.|+.++|.+.++.+..
T Consensus 436 ~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~--~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D 513 (895)
T KOG2076|consen 436 LLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLIL--APDNLDARITLASLYQQLGNHEKALETLEQIINPD 513 (895)
T ss_pred HHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhc--CCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCC
Confidence 9999998765667889999999999999999999999999876 4543 3455566778899999999999998542
Q ss_pred -----cCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh----CCCCC-----------------CHHHHHHHHHHH
Q 042546 507 -----KEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVRE----YDLKP-----------------WHTTYEELIKNL 560 (671)
Q Consensus 507 -----~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~~p-----------------~~~~~~~li~~~ 560 (671)
..+..|+...-....+.|...|+.++=..+-..|... .-+-| ...+-..++.+-
T Consensus 514 ~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~ 593 (895)
T KOG2076|consen 514 GRNAEACAWEPERRILAHRCDILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAR 593 (895)
T ss_pred ccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHH
Confidence 1345566666666777888889888755444444322 11111 111222233333
Q ss_pred HhcCCHHHHHHH------HHHHHhCCCCCCHH-----HHHHHHHhcCChHHHHHHHHHhhhCC--C-CCH---HHHHHHH
Q 042546 561 LVQRGFKDALSL------LCLMKDHGFPPFVD-----PFIKYVSKSGTSDDAIAFLKGMTSKR--F-PSM---SVVLCLF 623 (671)
Q Consensus 561 ~~~g~~~~A~~l------~~~m~~~~~~p~~~-----t~~~~l~~~g~~~~A~~~~~~m~~~~--~-p~~---~~~~~l~ 623 (671)
.+.++.....+- +.--..+|+.-+.. -++..+++.+++++|..+...+..-. . ++. ..-...+
T Consensus 594 ~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l 673 (895)
T KOG2076|consen 594 EKATDDNVMEKALSDGTEFRAVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGL 673 (895)
T ss_pred hccCchHHhhhcccchhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHH
Confidence 333322111111 11111112222211 12566789999999999988877632 1 222 2345567
Q ss_pred HHHHHcCCHHHHHHHHHhchHhh
Q 042546 624 AAFFQARRHSEAQDLLSKCPRYV 646 (671)
Q Consensus 624 ~~~~~~g~~~~A~~~~~~m~~~~ 646 (671)
.+....+++.+|...++.|....
T Consensus 674 ~~s~~~~d~~~a~~~lR~~i~~~ 696 (895)
T KOG2076|consen 674 KASLYARDPGDAFSYLRSVITQF 696 (895)
T ss_pred HHHHhcCCHHHHHHHHHHHHHHH
Confidence 77888999999999999987653
No 37
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.37 E-value=6.4e-09 Score=107.00 Aligned_cols=254 Identities=8% Similarity=0.008 Sum_probs=116.7
Q ss_pred CChHHHHHHHHHHHHcCCCCCCHHHHH--HHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHH
Q 042546 279 DEPKKALIFFRWAEESGFVKHDESSYN--AMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAV 356 (671)
Q Consensus 279 ~~~~~A~~~f~~~~~~~~~~~~~~~~~--~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~ 356 (671)
|+++.|.+.|.++.+. .|+...+- .....+...|+++.|...++++.+.. +-+......+...|.+.|++++|.
T Consensus 132 g~~~~A~~~l~~A~~~---~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~ 207 (398)
T PRK10747 132 GDEARANQHLERAAEL---ADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLL 207 (398)
T ss_pred CCHHHHHHHHHHHHhc---CCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHH
Confidence 4555555555555431 33332221 22445556666666666666666553 224555566666666666666666
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 042546 357 DLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEE 436 (671)
Q Consensus 357 ~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 436 (671)
+++..+.+.+..++.. ...+-. .+|..++.......+.+...++++.+.+
T Consensus 208 ~~l~~l~k~~~~~~~~-~~~l~~-----------------------------~a~~~l~~~~~~~~~~~~l~~~w~~lp~ 257 (398)
T PRK10747 208 DILPSMAKAHVGDEEH-RAMLEQ-----------------------------QAWIGLMDQAMADQGSEGLKRWWKNQSR 257 (398)
T ss_pred HHHHHHHHcCCCCHHH-HHHHHH-----------------------------HHHHHHHHHHHHhcCHHHHHHHHHhCCH
Confidence 6666666554432211 100000 0011111111222223333333333322
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHH
Q 042546 437 GGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYA 516 (671)
Q Consensus 437 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~ 516 (671)
. .+.+......+...+...|+.++|.+++++..+. .||... .++.+....++.+++.+..+...+ ..+-|...
T Consensus 258 ~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk--~~P~~~~l 330 (398)
T PRK10747 258 K-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERL--VLLIPRLKTNNPEQLEKVLRQQIK--QHGDTPLL 330 (398)
T ss_pred H-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHH--HHHHhhccCCChHHHHHHHHHHHh--hCCCCHHH
Confidence 1 1234444555555555555555555555555442 233211 112222333555555555555544 11123333
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 042546 517 IDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLM 576 (671)
Q Consensus 517 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m 576 (671)
..++-..|.+.|++++|.+.|+...+ ..|+...|..+...+.+.|+.++|.+++++-
T Consensus 331 ~l~lgrl~~~~~~~~~A~~~le~al~---~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~ 387 (398)
T PRK10747 331 WSTLGQLLMKHGEWQEASLAFRAALK---QRPDAYDYAWLADALDRLHKPEEAAAMRRDG 387 (398)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 44555555555555555555555543 3455555555555555555555555555544
No 38
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.33 E-value=1.5e-08 Score=104.78 Aligned_cols=294 Identities=12% Similarity=0.025 Sum_probs=187.2
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHcCCCCCC-HHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCH--HHHHHHHHH
Q 042546 269 LVKFVVDKLGDEPKKALIFFRWAEESGFVKHD-ESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEM--ETCVKVLGR 345 (671)
Q Consensus 269 ~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~li~~ 345 (671)
+....+....|+++.|.+.+....+. .|+ ...+-.....+.+.|+.+.|.+.+.+..+.. |+. ...-.....
T Consensus 88 ~~~glla~~~g~~~~A~~~l~~~~~~---~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--p~~~l~~~~~~a~l 162 (409)
T TIGR00540 88 TEEALLKLAEGDYAKAEKLIAKNADH---AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA--GNDNILVEIARTRI 162 (409)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHhhc---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CcCchHHHHHHHHH
Confidence 34444445569999999999887652 454 3444455677888899999999999987653 443 344445778
Q ss_pred HHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 042546 346 FSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMG 425 (671)
Q Consensus 346 ~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 425 (671)
+...|+++.|.+.++.+.+.. |+ +..+...+...|.+.|+++
T Consensus 163 ~l~~~~~~~Al~~l~~l~~~~--P~------------------------------------~~~~l~ll~~~~~~~~d~~ 204 (409)
T TIGR00540 163 LLAQNELHAARHGVDKLLEMA--PR------------------------------------HKEVLKLAEEAYIRSGAWQ 204 (409)
T ss_pred HHHCCCHHHHHHHHHHHHHhC--CC------------------------------------CHHHHHHHHHHHHHHhhHH
Confidence 888999999999999998642 22 2334566777778888888
Q ss_pred HHHHHHHHHHHCCCCCCHHHHH-HHHHHH---HhcCCHHHHHHHHHHHHHCCC---CCCHHHHHHHHHHHHhcCCHHHHH
Q 042546 426 ECNKILKAMEEGGFIASSNMKS-KIAFRL---SSAGKKDEANEFMDHMEASGS---DVGDKMWVSLIKGHCVAGDLDKAA 498 (671)
Q Consensus 426 ~A~~~~~~m~~~g~~~~~~~~~-~li~~~---~~~g~~~~A~~~~~~m~~~g~---~~~~~~~~~li~~~~~~g~~~~a~ 498 (671)
+|.+++..+.+.+.. +...+. .-..++ ...+..+++.+.+..+.+... +.+...+..+...+...|+.++|.
T Consensus 205 ~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~ 283 (409)
T TIGR00540 205 ALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQ 283 (409)
T ss_pred HHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHH
Confidence 888888888877643 333231 111111 222333333344444443321 126677777888888888888888
Q ss_pred HHHHHHHHcCCCCCCHHHH-HHHHHH--HHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 042546 499 DCFQKMVEKEGTSHAGYAI-DLLVNT--YCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCL 575 (671)
Q Consensus 499 ~~~~~m~~~~g~~p~~~~~-~~li~~--~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~ 575 (671)
+++++..+ . .||.... ..++.. ....++.+.+.+.++...+...-.|+.....++-..+.+.|++++|.+.|+.
T Consensus 284 ~~l~~~l~-~--~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~ 360 (409)
T TIGR00540 284 EIIFDGLK-K--LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKN 360 (409)
T ss_pred HHHHHHHh-h--CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 88888876 2 2333210 012222 2335677777777777765422222213445677777888888888888885
Q ss_pred HHhCCCCCCHHHH---HHHHHhcCChHHHHHHHHHhh
Q 042546 576 MKDHGFPPFVDPF---IKYVSKSGTSDDAIAFLKGMT 609 (671)
Q Consensus 576 m~~~~~~p~~~t~---~~~l~~~g~~~~A~~~~~~m~ 609 (671)
.......|+...+ ..++.+.|+.++|.+++++..
T Consensus 361 a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 361 VAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred hHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3333346666543 455667888888888887653
No 39
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.31 E-value=6e-08 Score=94.65 Aligned_cols=230 Identities=13% Similarity=0.103 Sum_probs=177.1
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 042546 419 ISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAA 498 (671)
Q Consensus 419 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~ 498 (671)
.-.|+.-.|..-|+..+.....++ ..|--+..+|....+.++.++.|++....+. -|..+|.---..+.-.+++++|.
T Consensus 337 fL~g~~~~a~~d~~~~I~l~~~~~-~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp-~n~dvYyHRgQm~flL~q~e~A~ 414 (606)
T KOG0547|consen 337 FLKGDSLGAQEDFDAAIKLDPAFN-SLYIKRAAAYADENQSEKMWKDFNKAEDLDP-ENPDVYYHRGQMRFLLQQYEEAI 414 (606)
T ss_pred hhcCCchhhhhhHHHHHhcCcccc-hHHHHHHHHHhhhhccHHHHHHHHHHHhcCC-CCCchhHhHHHHHHHHHHHHHHH
Confidence 457888899999999887653333 3377788889999999999999999987652 34555655556666778899999
Q ss_pred HHHHHHHHcCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 042546 499 DCFQKMVEKEGTSHA-GYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMK 577 (671)
Q Consensus 499 ~~~~~m~~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 577 (671)
.=|++... +.|+ ...|--+--+.-+.+++++++..|++..++ ++--...|+.....+...+++++|.+.|+...
T Consensus 415 aDF~Kai~---L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk--FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai 489 (606)
T KOG0547|consen 415 ADFQKAIS---LDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK--FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAI 489 (606)
T ss_pred HHHHHHhh---cChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHH
Confidence 99998866 4443 445555555666889999999999999986 44556788888899999999999999999887
Q ss_pred hCCCCCC-------HHHHH----HHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhchHhh
Q 042546 578 DHGFPPF-------VDPFI----KYVSKSGTSDDAIAFLKGMTSKRFPSMSVVLCLFAAFFQARRHSEAQDLLSKCPRYV 646 (671)
Q Consensus 578 ~~~~~p~-------~~t~~----~~l~~~g~~~~A~~~~~~m~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 646 (671)
+ +.|+ ..+++ -.+-=.+++..|..++.+.++.++.....|.+|...-.+.|+.++|+++|++-...-
T Consensus 490 ~--LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lA 567 (606)
T KOG0547|consen 490 E--LEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLA 567 (606)
T ss_pred h--hccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 5 3444 22331 112234899999999999999888888999999999999999999999999976655
Q ss_pred hccHHHHHHHH
Q 042546 647 RNHADVLNLLY 657 (671)
Q Consensus 647 ~~~~~~~~l~~ 657 (671)
+...+..+.|.
T Consensus 568 rt~~E~~~a~s 578 (606)
T KOG0547|consen 568 RTESEMVHAYS 578 (606)
T ss_pred HhHHHHHHHHH
Confidence 55555444443
No 40
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.30 E-value=1.1e-07 Score=99.64 Aligned_cols=362 Identities=12% Similarity=0.070 Sum_probs=218.5
Q ss_pred HHHccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHcCCCCChHHHHHHHHHHHHhcCCChh
Q 042546 173 IVGVHGLVQEFWGLVDVMKKKGYGVASHVRNKMTEKFEKEGLESDLEKLKGIFATGSIDNSIEKVASRICKVVRSDIWGD 252 (671)
Q Consensus 173 ~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (671)
.+++ |+.++|.+++.+..+.. +-+...|-+|-..|-..|+..
T Consensus 149 lfar-g~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~e------------------------------------ 190 (895)
T KOG2076|consen 149 LFAR-GDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIE------------------------------------ 190 (895)
T ss_pred HHHh-CCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHH------------------------------------
Confidence 3444 99999999999998874 346777888888887776444
Q ss_pred HHHHHHhhcccccChHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCC
Q 042546 253 DVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGY 332 (671)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 332 (671)
++...+-..-. --+.|..-|-.+-....+.|++++|.-+|.+..+..
T Consensus 191 ------------------------------K~l~~~llAAH--L~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~- 237 (895)
T KOG2076|consen 191 ------------------------------KALNFWLLAAH--LNPKDYELWKRLADLSEQLGNINQARYCYSRAIQAN- 237 (895)
T ss_pred ------------------------------HHHHHHHHHHh--cCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcC-
Confidence 44433333321 225666778888888888888888888888887763
Q ss_pred CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCCCCHHHHH
Q 042546 333 EMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLN 412 (671)
Q Consensus 333 ~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (671)
+++...+--=...|-+.|+...|..-|.++.......|..-+-.++..
T Consensus 238 p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~-------------------------------- 285 (895)
T KOG2076|consen 238 PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRR-------------------------------- 285 (895)
T ss_pred CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHH--------------------------------
Confidence 334444445566677888888888888888754221121111111111
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-------------------
Q 042546 413 SVLKALISVGRMGECNKILKAMEEG-GFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEAS------------------- 472 (671)
Q Consensus 413 ~li~~~~~~g~~~~A~~~~~~m~~~-g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------------------- 472 (671)
++..+...++-+.|.+.++..... +-..+...++.++..|.+...++.|......+...
T Consensus 286 -~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~ 364 (895)
T KOG2076|consen 286 -VAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEP 364 (895)
T ss_pred -HHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccc
Confidence 222233333334444444433321 11222333444444444444444444444444331
Q ss_pred --------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 042546 473 --------GSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEG--TSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVR 542 (671)
Q Consensus 473 --------g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 542 (671)
+..++...+ -+.-++.+....+....+.....+ .. ..-+...|.-+.++|...|++.+|.++|..+..
T Consensus 365 ~~~~~~~~~~s~~l~v~-rl~icL~~L~~~e~~e~ll~~l~~-~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~ 442 (895)
T KOG2076|consen 365 NALCEVGKELSYDLRVI-RLMICLVHLKERELLEALLHFLVE-DNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITN 442 (895)
T ss_pred cccccCCCCCCccchhH-hHhhhhhcccccchHHHHHHHHHH-hcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhc
Confidence 112222221 122233444444444445555554 44 334556677888888888889999888888876
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHhcCChHHHHHHHHHhhhCC------
Q 042546 543 EYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFV----DPFIKYVSKSGTSDDAIAFLKGMTSKR------ 612 (671)
Q Consensus 543 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~----~t~~~~l~~~g~~~~A~~~~~~m~~~~------ 612 (671)
. ...-+...|--+..+|-..|..++|++.|+..... .|+. .++...+-+.|+.++|.+.++.|..-+
T Consensus 443 ~-~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~--~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~ 519 (895)
T KOG2076|consen 443 R-EGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLIL--APDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEA 519 (895)
T ss_pred C-ccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhc--CCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhh
Confidence 4 23334667888888888888888898888888753 5554 456777788888888888888865321
Q ss_pred ---CCCHHHHHHHHHHHHHcCCHHHHHHHHHhch
Q 042546 613 ---FPSMSVVLCLFAAFFQARRHSEAQDLLSKCP 643 (671)
Q Consensus 613 ---~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 643 (671)
.|+...-....+.|.+.|+.++=...-.+|.
T Consensus 520 ~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv 553 (895)
T KOG2076|consen 520 CAWEPERRILAHRCDILFQVGKREEFINTASTLV 553 (895)
T ss_pred ccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 2444555566778888888887555544443
No 41
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.30 E-value=2.9e-11 Score=118.71 Aligned_cols=252 Identities=16% Similarity=0.088 Sum_probs=86.6
Q ss_pred CChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHH
Q 042546 279 DEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDL 358 (671)
Q Consensus 279 ~~~~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l 358 (671)
|++++|+++++......-.+.|...|..+....-..++.++|.+.++++...+.. +...+..++.. ...+++++|.++
T Consensus 22 ~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~~~~A~~~ 99 (280)
T PF13429_consen 22 GDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGDPEEALKL 99 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-cccccccccccc
Confidence 6666666666432211101223344444444555566666666666666654322 34445555554 466666666666
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 042546 359 YEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGG 438 (671)
Q Consensus 359 ~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 438 (671)
+....+.. ++...+..++..+.+.++++++.++++......
T Consensus 100 ~~~~~~~~---------------------------------------~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~ 140 (280)
T PF13429_consen 100 AEKAYERD---------------------------------------GDPRYLLSALQLYYRLGDYDEAEELLEKLEELP 140 (280)
T ss_dssp ---------------------------------------------------------H-HHHTT-HHHHHHHHHHHHH-T
T ss_pred cccccccc---------------------------------------cccchhhHHHHHHHHHhHHHHHHHHHHHHHhcc
Confidence 55443211 122234555666667777777777777765422
Q ss_pred -CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHH
Q 042546 439 -FIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDV-GDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYA 516 (671)
Q Consensus 439 -~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~ 516 (671)
.+.+...|..+...+.+.|+.++|.+.+++..+. .| |....+.++..+...|+.+++.++++...+ .. ..|...
T Consensus 141 ~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~--~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~-~~-~~~~~~ 216 (280)
T PF13429_consen 141 AAPDSARFWLALAEIYEQLGDPDKALRDYRKALEL--DPDDPDARNALAWLLIDMGDYDEAREALKRLLK-AA-PDDPDL 216 (280)
T ss_dssp ---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHH-H--HTSCCH
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHH-HC-cCHHHH
Confidence 3455666777777777777777777777777665 34 355666777777777777777777776665 22 334445
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 042546 517 IDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMK 577 (671)
Q Consensus 517 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 577 (671)
+..+..+|...|+.++|...|++.... .+.|......+.+++.+.|+.++|.++.++..
T Consensus 217 ~~~la~~~~~lg~~~~Al~~~~~~~~~--~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 217 WDALAAAYLQLGRYEEALEYLEKALKL--NPDDPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp CHHHHHHHHHHT-HHHHHHHHHHHHHH--STT-HHHHHHHHHHHT----------------
T ss_pred HHHHHHHhccccccccccccccccccc--cccccccccccccccccccccccccccccccc
Confidence 666777777777777777777776653 23355556666677777777777777766543
No 42
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.27 E-value=4.4e-08 Score=90.67 Aligned_cols=290 Identities=14% Similarity=0.165 Sum_probs=207.5
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcccHHHHH
Q 042546 314 EDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFS 393 (671)
Q Consensus 314 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~ 393 (671)
+++.++|.++|-+|.+.. +-+..+--+|-+.|-+.|.+|.|++++..+.++ ||... .-
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~-~q----------------- 105 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTF-EQ----------------- 105 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCch-HH-----------------
Confidence 467899999999999852 112334456888899999999999999998864 43221 10
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 042546 394 KVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASG 473 (671)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 473 (671)
+. ...-.|-.-|...|-+|.|+.+|..+.+.+ .--......|+..|-+..++++|.++-+++.+.+
T Consensus 106 r~-------------lAl~qL~~Dym~aGl~DRAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~ 171 (389)
T COG2956 106 RL-------------LALQQLGRDYMAAGLLDRAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLG 171 (389)
T ss_pred HH-------------HHHHHHHHHHHHhhhhhHHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcC
Confidence 00 113345666888999999999999998755 3345567789999999999999999999998776
Q ss_pred CCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCC
Q 042546 474 SDVGD----KMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGY-AIDLLVNTYCSKNRAIDACKFVHNCVREYDLKP 548 (671)
Q Consensus 474 ~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p 548 (671)
-++.. ..|.-+-..+....+++.|..++.+..+ . .|+.+ .--.+-+.+...|+++.|.+.++.+.++ +..-
T Consensus 172 ~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlq-a--~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ-n~~y 247 (389)
T COG2956 172 GQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQ-A--DKKCVRASIILGRVELAKGDYQKAVEALERVLEQ-NPEY 247 (389)
T ss_pred CccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHh-h--CccceehhhhhhHHHHhccchHHHHHHHHHHHHh-ChHH
Confidence 55543 2355566666677899999999999876 2 33332 2233446788899999999999999875 3333
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH-HhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHHH
Q 042546 549 WHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPFIKYV-SKSGTSDDAIAFLKGMTSKRFPSMSVVLCLFAAFF 627 (671)
Q Consensus 549 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~t~~~~l-~~~g~~~~A~~~~~~m~~~~~p~~~~~~~l~~~~~ 627 (671)
-..+...|..+|.+.|+.++...++.++.+....++..-.+.-+ ....-.+.|..++.+-.++ .|+...+..+++.-.
T Consensus 248 l~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r-~Pt~~gf~rl~~~~l 326 (389)
T COG2956 248 LSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGADAELMLADLIELQEGIDAAQAYLTRQLRR-KPTMRGFHRLMDYHL 326 (389)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCccHHHHHHHHHHHhhChHHHHHHHHHHHhh-CCcHHHHHHHHHhhh
Confidence 34577888899999999999999999998876666655443333 3334455566655544433 288888888888664
Q ss_pred H---cCCHHHHHHHHHhchH
Q 042546 628 Q---ARRHSEAQDLLSKCPR 644 (671)
Q Consensus 628 ~---~g~~~~A~~~~~~m~~ 644 (671)
. .|++.+....++.|..
T Consensus 327 ~daeeg~~k~sL~~lr~mvg 346 (389)
T COG2956 327 ADAEEGRAKESLDLLRDMVG 346 (389)
T ss_pred ccccccchhhhHHHHHHHHH
Confidence 4 4567777777777764
No 43
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.26 E-value=3.5e-07 Score=88.90 Aligned_cols=258 Identities=10% Similarity=-0.015 Sum_probs=185.5
Q ss_pred HHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCC-C-CCHHHHHHHHHHHHhcCc
Q 042546 309 SVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKN-K-PSVNCCTFLLRKIVVSKQ 386 (671)
Q Consensus 309 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~g~-~-p~~~~~~~ll~~~~~~~~ 386 (671)
.++-...+.+++.+-.+.....|+..+...-+....+.-...++++|+.+|+++.+... . -|..+|+-++-.-....
T Consensus 235 ~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~s- 313 (559)
T KOG1155|consen 235 KAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKS- 313 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhH-
Confidence 34444456666666666666666654444444444444556677777777777775521 1 14456655543322211
Q ss_pred ccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 042546 387 LDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFM 466 (671)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 466 (671)
....... ....-.... +.|+..+.+-|+-.++.++|...|++..+.+ +.....|+.|-+-|....+...|.+-+
T Consensus 314 -kLs~LA~--~v~~idKyR--~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sY 387 (559)
T KOG1155|consen 314 -KLSYLAQ--NVSNIDKYR--PETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESY 387 (559)
T ss_pred -HHHHHHH--HHHHhccCC--ccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHH
Confidence 1110000 001112222 3567788888899999999999999999876 556788999999999999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 042546 467 DHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDL 546 (671)
Q Consensus 467 ~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 546 (671)
+...+-. +.|-..|-.|.++|.-.+...-|+-.|++..+ -.+-|...|.+|-++|.+.++.++|.+.|.....- -
T Consensus 388 RrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~--~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~--~ 462 (559)
T KOG1155|consen 388 RRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALE--LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILL--G 462 (559)
T ss_pred HHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHh--cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhc--c
Confidence 9998765 56888999999999999999999999999876 23347889999999999999999999999998763 2
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 042546 547 KPWHTTYEELIKNLLVQRGFKDALSLLCLMKD 578 (671)
Q Consensus 547 ~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 578 (671)
..+...+..|.+.|-+.++.++|.+.|++-.+
T Consensus 463 dte~~~l~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 463 DTEGSALVRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 33567889999999999999999998887654
No 44
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.26 E-value=4.7e-08 Score=90.49 Aligned_cols=233 Identities=12% Similarity=0.131 Sum_probs=165.6
Q ss_pred HHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 042546 306 AMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSK 385 (671)
Q Consensus 306 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~ 385 (671)
.|-.-|...|-+|.|+++|..+.+.|. --....-.|+..|-+..+|++|+++-+++.+.+-.+..+ -|.
T Consensus 112 qL~~Dym~aGl~DRAE~~f~~L~de~e-fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~----eIA------ 180 (389)
T COG2956 112 QLGRDYMAAGLLDRAEDIFNQLVDEGE-FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRV----EIA------ 180 (389)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHhcchh-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchh----HHH------
Confidence 344557778889999999998887542 235567788999999999999999999888765444322 111
Q ss_pred cccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 042546 386 QLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEF 465 (671)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 465 (671)
..|.-+...+....+++.|..++.+..+.+ +..+..--.+-+.+...|+++.|.+.
T Consensus 181 -----------------------qfyCELAq~~~~~~~~d~A~~~l~kAlqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~ 236 (389)
T COG2956 181 -----------------------QFYCELAQQALASSDVDRARELLKKALQAD-KKCVRASIILGRVELAKGDYQKAVEA 236 (389)
T ss_pred -----------------------HHHHHHHHHHhhhhhHHHHHHHHHHHHhhC-ccceehhhhhhHHHHhccchHHHHHH
Confidence 125666666777788999999999888765 23334444566778889999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC
Q 042546 466 MDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYD 545 (671)
Q Consensus 466 ~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 545 (671)
++...+.+..--..+...|..+|.+.|+.++....+..+.+ ....++. -..+-+.-....-.+.|...+.+-..+
T Consensus 237 ~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~-~~~g~~~--~l~l~~lie~~~G~~~Aq~~l~~Ql~r-- 311 (389)
T COG2956 237 LERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAME-TNTGADA--ELMLADLIELQEGIDAAQAYLTRQLRR-- 311 (389)
T ss_pred HHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH-ccCCccH--HHHHHHHHHHhhChHHHHHHHHHHHhh--
Confidence 99998875444456678899999999999999999999887 4433333 344444434455566666666555443
Q ss_pred CCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHhC
Q 042546 546 LKPWHTTYEELIKNLLV---QRGFKDALSLLCLMKDH 579 (671)
Q Consensus 546 ~~p~~~~~~~li~~~~~---~g~~~~A~~l~~~m~~~ 579 (671)
+|+...+..+|+.-.. .|...+-+.+++.|...
T Consensus 312 -~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge 347 (389)
T COG2956 312 -KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGE 347 (389)
T ss_pred -CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHH
Confidence 6999999999986543 45566677777777644
No 45
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.26 E-value=1.3e-08 Score=97.94 Aligned_cols=206 Identities=12% Similarity=0.050 Sum_probs=147.1
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 042546 419 ISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAA 498 (671)
Q Consensus 419 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~ 498 (671)
...|++++|.+.+++.....-.-....||.= -.+-..|++++|++.|-++... ..-+......+...|-...+..+|.
T Consensus 501 f~ngd~dka~~~ykeal~ndasc~ealfnig-lt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqai 578 (840)
T KOG2003|consen 501 FANGDLDKAAEFYKEALNNDASCTEALFNIG-LTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAI 578 (840)
T ss_pred eecCcHHHHHHHHHHHHcCchHHHHHHHHhc-ccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHH
Confidence 3468888888888888754322222333322 2356788889998888776432 1234555666777788888888888
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 042546 499 DCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKD 578 (671)
Q Consensus 499 ~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 578 (671)
+++-+... -++.|..+.+-|.+.|-+.|+-..|.+.+-+--+ -++-+..+..-|..-|....-+++|+..|++..
T Consensus 579 e~~~q~~s--lip~dp~ilskl~dlydqegdksqafq~~ydsyr--yfp~nie~iewl~ayyidtqf~ekai~y~ekaa- 653 (840)
T KOG2003|consen 579 ELLMQANS--LIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYR--YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAA- 653 (840)
T ss_pred HHHHHhcc--cCCCCHHHHHHHHHHhhcccchhhhhhhhhhccc--ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHH-
Confidence 88876643 3555677788888888888988888887665443 245567777777777777888888998888765
Q ss_pred CCCCCCHHHH----HHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCH
Q 042546 579 HGFPPFVDPF----IKYVSKSGTSDDAIAFLKGMTSKRFPSMSVVLCLFAAFFQARRH 632 (671)
Q Consensus 579 ~~~~p~~~t~----~~~l~~~g~~~~A~~~~~~m~~~~~p~~~~~~~l~~~~~~~g~~ 632 (671)
-+.|+..-| .+.+.+.|++..|..+++.+.++.+.|.....-|+..+...|..
T Consensus 654 -liqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl~ 710 (840)
T KOG2003|consen 654 -LIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGLK 710 (840)
T ss_pred -hcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccch
Confidence 367887655 45556889999999999988888888888888888887777743
No 46
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.26 E-value=5.9e-08 Score=92.73 Aligned_cols=283 Identities=11% Similarity=0.020 Sum_probs=213.7
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcccHHHHH
Q 042546 314 EDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFS 393 (671)
Q Consensus 314 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~ 393 (671)
.|++..|+++..+-.+.+-. ....|..-..+--+.|+.+.+-....+.-+.
T Consensus 97 eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~---------------------------- 147 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAEL---------------------------- 147 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhcc----------------------------
Confidence 47888888888776666533 3445555566666777888887777776542
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 042546 394 KVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASG 473 (671)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 473 (671)
.-.++....-+........|+.+.|..-.+++.+.+ +.+.........+|.+.|++.....+...|.+.|
T Consensus 148 ---------~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~ 217 (400)
T COG3071 148 ---------AGDDTLAVELTRARLLLNRRDYPAARENVDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAG 217 (400)
T ss_pred ---------CCCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHcc
Confidence 112233345556666788899999999888888776 5677888999999999999999999999999988
Q ss_pred CCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 042546 474 SDVGD-------KMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDL 546 (671)
Q Consensus 474 ~~~~~-------~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 546 (671)
.--|. .+|+.+++-....+..+.-...|+.... ..+-+...-.+++.-+.++|+.++|.++..+..++ +.
T Consensus 218 ~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr--~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~-~~ 294 (400)
T COG3071 218 LLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPR--KLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKR-QW 294 (400)
T ss_pred CCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccH--HhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHh-cc
Confidence 75554 5788888888888888887788888765 34556666778888899999999999999998875 56
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHH-HhCCCCCCHH-HHHHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHH
Q 042546 547 KPWHTTYEELIKNLLVQRGFKDALSLLCLM-KDHGFPPFVD-PFIKYVSKSGTSDDAIAFLKGMTSKRFPSMSVVLCLFA 624 (671)
Q Consensus 547 ~p~~~~~~~li~~~~~~g~~~~A~~l~~~m-~~~~~~p~~~-t~~~~l~~~g~~~~A~~~~~~m~~~~~p~~~~~~~l~~ 624 (671)
.|+.. ..-.+.+.++.+.-++..++- ...+-.|+.. |+-..|.+.+.+.+|..+|+...+. .|+..+|..+.+
T Consensus 295 D~~L~----~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~-~~s~~~~~~la~ 369 (400)
T COG3071 295 DPRLC----RLIPRLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKL-RPSASDYAELAD 369 (400)
T ss_pred ChhHH----HHHhhcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc-CCChhhHHHHHH
Confidence 56522 223456677777777666644 4556666543 4456667999999999999976653 389999999999
Q ss_pred HHHHcCCHHHHHHHHHhch
Q 042546 625 AFFQARRHSEAQDLLSKCP 643 (671)
Q Consensus 625 ~~~~~g~~~~A~~~~~~m~ 643 (671)
+|.+.|+.++|.+.+++-.
T Consensus 370 ~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 370 ALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred HHHHcCChHHHHHHHHHHH
Confidence 9999999999999988743
No 47
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.25 E-value=2.9e-06 Score=82.84 Aligned_cols=429 Identities=13% Similarity=0.051 Sum_probs=302.1
Q ss_pred CCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHH
Q 042546 141 ESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRNKMTEKFEKEGLESDLEK 220 (671)
Q Consensus 141 ~~~~~~A~~~f~~m~~~~~~~~~~~~~n~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~~~ 220 (671)
.+++..|+.+|+....-. ..++..|-.-+..=.++..+..|..++++....=...|..-|--+. .
T Consensus 86 q~e~~RARSv~ERALdvd--~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~y-m------------ 150 (677)
T KOG1915|consen 86 QKEIQRARSVFERALDVD--YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIY-M------------ 150 (677)
T ss_pred HHHHHHHHHHHHHHHhcc--cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHH-H------------
Confidence 467888999999987622 3677888888888889999999999988876542222222221110 0
Q ss_pred HHHHHHcCCCCChHHHHHHHHHHHHhcCCChhHHHHHHhhcccccChHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCC
Q 042546 221 LKGIFATGSIDNSIEKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHD 300 (671)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~ 300 (671)
...-|++..|.++|++-.+ ..|+
T Consensus 151 ------------------------------------------------------EE~LgNi~gaRqiferW~~---w~P~ 173 (677)
T KOG1915|consen 151 ------------------------------------------------------EEMLGNIAGARQIFERWME---WEPD 173 (677)
T ss_pred ------------------------------------------------------HHHhcccHHHHHHHHHHHc---CCCc
Confidence 0001888999999987653 3999
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 042546 301 ESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRK 380 (671)
Q Consensus 301 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~ 380 (671)
...|++.|..=.+-+.++.|..+++...-. .|++.+|---..-=-+.|.+..|..+|+...+. .-|...-..+..+
T Consensus 174 eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~VyerAie~--~~~d~~~e~lfva 249 (677)
T KOG1915|consen 174 EQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVYERAIEF--LGDDEEAEILFVA 249 (677)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH--hhhHHHHHHHHHH
Confidence 999999999999999999999999998864 599999998888888999999999999988743 2233333445555
Q ss_pred HHhcCc--ccHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHH--------HHHHHHHCCCCCCHHHHHH
Q 042546 381 IVVSKQ--LDMRLFSKVVRVFRENGNVLT--DAMLNSVLKALISVGRMGECNK--------ILKAMEEGGFIASSNMKSK 448 (671)
Q Consensus 381 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~--------~~~~m~~~g~~~~~~~~~~ 448 (671)
+++-.. .+.+.+.-+++-..+. ++.+ ...|......=-+-|+.....+ -++.+.+.+ +-|-.+|--
T Consensus 250 FA~fEe~qkE~ERar~iykyAld~-~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~n-p~nYDsWfd 327 (677)
T KOG1915|consen 250 FAEFEERQKEYERARFIYKYALDH-IPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKN-PYNYDSWFD 327 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh-cCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhC-CCCchHHHH
Confidence 554321 1233444444444332 2222 2345555544455566443333 244455444 567788888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHH-----HH---HHhcCCHHHHHHHHHHHHHcCCCCCCHHHHH
Q 042546 449 IAFRLSSAGKKDEANEFMDHMEASGSDVGD--KMWVSLI-----KG---HCVAGDLDKAADCFQKMVEKEGTSHAGYAID 518 (671)
Q Consensus 449 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~--~~~~~li-----~~---~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~ 518 (671)
.+..-...|+.+...++|++.... ++|-. ..|.-.| -+ =....+++.+.++++...+ -++....||.
T Consensus 328 ylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~--lIPHkkFtFa 404 (677)
T KOG1915|consen 328 YLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLD--LIPHKKFTFA 404 (677)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--hcCcccchHH
Confidence 888888999999999999999865 34421 1122211 11 1356899999999999886 3555667777
Q ss_pred HHHHHHH----hcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH--
Q 042546 519 LLVNTYC----SKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPFIKYV-- 592 (671)
Q Consensus 519 ~li~~~~----~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~t~~~~l-- 592 (671)
-+--+|+ ++.++..|.+++.... |.-|...+|...|..-.+.+.+|....++++..+- .|..-.--..|
T Consensus 405 KiWlmyA~feIRq~~l~~ARkiLG~AI---G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~--~Pe~c~~W~kyaE 479 (677)
T KOG1915|consen 405 KIWLMYAQFEIRQLNLTGARKILGNAI---GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEF--SPENCYAWSKYAE 479 (677)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHh---ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhc--ChHhhHHHHHHHH
Confidence 7666665 5789999999999886 67899999999999889999999999999999874 55543322233
Q ss_pred --HhcCChHHHHHHHHHhhhCCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHhchHhhhccHHHHHHH
Q 042546 593 --SKSGTSDDAIAFLKGMTSKRF--PSMSVVLCLFAAFFQARRHSEAQDLLSKCPRYVRNHADVLNLL 656 (671)
Q Consensus 593 --~~~g~~~~A~~~~~~m~~~~~--p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~l~ 656 (671)
...|+.+.|..+|+-..+... .....|-+.|+-=...|.++.|..++++..++....+ ++--|
T Consensus 480 lE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~k-vWisF 546 (677)
T KOG1915|consen 480 LETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVK-VWISF 546 (677)
T ss_pred HHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccch-HHHhH
Confidence 468999999999998887432 2345688888888899999999999999887654444 43333
No 48
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.25 E-value=4.4e-06 Score=84.76 Aligned_cols=317 Identities=11% Similarity=0.030 Sum_probs=173.9
Q ss_pred CChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHH
Q 042546 279 DEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDL 358 (671)
Q Consensus 279 ~~~~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l 358 (671)
+..+-|..+|....+ -++.+...|......=-..|..++...+|++.... ++-....|-....-+-..|++..|+.+
T Consensus 530 ~~~~carAVya~alq--vfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~i 606 (913)
T KOG0495|consen 530 PAIECARAVYAHALQ--VFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVI 606 (913)
T ss_pred chHHHHHHHHHHHHh--hccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHH
Confidence 556666666666553 23555666766666666667777777777776654 233455555555666666777777777
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 042546 359 YEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGG 438 (671)
Q Consensus 359 ~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 438 (671)
+....+.. |+ +..+|-+.+..-.....++.|..+|.+....
T Consensus 607 l~~af~~~--pn------------------------------------seeiwlaavKle~en~e~eraR~llakar~~- 647 (913)
T KOG0495|consen 607 LDQAFEAN--PN------------------------------------SEEIWLAAVKLEFENDELERARDLLAKARSI- 647 (913)
T ss_pred HHHHHHhC--CC------------------------------------cHHHHHHHHHHhhccccHHHHHHHHHHHhcc-
Confidence 76665431 11 2234444555555555555555555554432
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHH
Q 042546 439 FIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGD-KMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAI 517 (671)
Q Consensus 439 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~ 517 (671)
.|+...|.--+..---.++.++|.+++++..+. -|+- ..|-.+-..+-+.++++.|.+.|..-.+ .++-.+..|
T Consensus 648 -sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k--~cP~~ipLW 722 (913)
T KOG0495|consen 648 -SGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTK--KCPNSIPLW 722 (913)
T ss_pred -CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccc--cCCCCchHH
Confidence 344445544444444455555555555555443 2332 2344444445555555555555544322 122223334
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-----------------
Q 042546 518 DLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHG----------------- 580 (671)
Q Consensus 518 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~----------------- 580 (671)
-.|...=-+.|.+-.|..+++.-..+ -+-+...|-..|..-.+.|+.+.|..+..+..+.-
T Consensus 723 llLakleEk~~~~~rAR~ildrarlk--NPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~ 800 (913)
T KOG0495|consen 723 LLLAKLEEKDGQLVRARSILDRARLK--NPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRP 800 (913)
T ss_pred HHHHHHHHHhcchhhHHHHHHHHHhc--CCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCc
Confidence 44444444555555555555555443 22344455555555555555555555544443320
Q ss_pred ------------CCCCHHH---HHHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhchH
Q 042546 581 ------------FPPFVDP---FIKYVSKSGTSDDAIAFLKGMTSKRFPSMSVVLCLFAAFFQARRHSEAQDLLSKCPR 644 (671)
Q Consensus 581 ------------~~p~~~t---~~~~l~~~g~~~~A~~~~~~m~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 644 (671)
+.-|... ....+-...+++.|.+.|.+..+.++.+-.+|.-+...+.++|.-++-.+++++...
T Consensus 801 ~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~ 879 (913)
T KOG0495|consen 801 QRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCET 879 (913)
T ss_pred ccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence 1111111 123334456677888888888877776777787778888888877777777776543
No 49
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.24 E-value=4.3e-09 Score=106.66 Aligned_cols=277 Identities=11% Similarity=-0.010 Sum_probs=168.4
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCC-C-CCCHHHHHHHHHHHHhcCcccHHHHH
Q 042546 316 CIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACK-N-KPSVNCCTFLLRKIVVSKQLDMRLFS 393 (671)
Q Consensus 316 ~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~g-~-~p~~~~~~~ll~~~~~~~~~~~~~~~ 393 (671)
+..+|..+|....++ +.-.......+-.+|...+++++|.++|+.+.+.. . .-+...|++.+..+-+.- ..
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v------~L 406 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEV------AL 406 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhH------HH
Confidence 467888888886655 22234566677888999999999999999987531 1 113344444444331110 00
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 042546 394 KVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASG 473 (671)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 473 (671)
.. -|..+.+.+ +-.+.+|.++-++|.-.++.+.|++.|++..+.
T Consensus 407 s~------------------------------Laq~Li~~~-----~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl- 450 (638)
T KOG1126|consen 407 SY------------------------------LAQDLIDTD-----PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL- 450 (638)
T ss_pred HH------------------------------HHHHHHhhC-----CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc-
Confidence 00 111222221 344566777777777777777777777766654
Q ss_pred CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHH---HHHHHHhcCCHHHHHHHHHHHHHhCCCCCC
Q 042546 474 SDV-GDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDL---LVNTYCSKNRAIDACKFVHNCVREYDLKPW 549 (671)
Q Consensus 474 ~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~---li~~~~~~g~~~~A~~~~~~m~~~~~~~p~ 549 (671)
.| ..++|+.+-.-+....++|.|...|+.... .|...|++ |-..|.+.++++.|+-.|+...+ +.|.
T Consensus 451 -dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~-----~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~---INP~ 521 (638)
T KOG1126|consen 451 -DPRFAYAYTLLGHESIATEEFDKAMKSFRKALG-----VDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVE---INPS 521 (638)
T ss_pred -CCccchhhhhcCChhhhhHHHHhHHHHHHhhhc-----CCchhhHHHHhhhhheeccchhhHHHHHHHhhhc---CCcc
Confidence 33 556666666666666777777777765533 34444444 34456777777777777776654 4443
Q ss_pred -HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH--HHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHH
Q 042546 550 -HTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPF--IKYVSKSGTSDDAIAFLKGMTSKRFPSMSVVLCLFAAF 626 (671)
Q Consensus 550 -~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~t~--~~~l~~~g~~~~A~~~~~~m~~~~~p~~~~~~~l~~~~ 626 (671)
.+....+...+.+.|+.|+|++++++......+-...-| ...+...++.++|...++++....+.+..+|..+...|
T Consensus 522 nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~ 601 (638)
T KOG1126|consen 522 NSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIY 601 (638)
T ss_pred chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHH
Confidence 334445555566677777777777777643322111222 45556677777777777777776666667777777777
Q ss_pred HHcCCHHHHHHHHHhchH
Q 042546 627 FQARRHSEAQDLLSKCPR 644 (671)
Q Consensus 627 ~~~g~~~~A~~~~~~m~~ 644 (671)
.+.|+.+.|+.-|.-+.+
T Consensus 602 k~~~~~~~Al~~f~~A~~ 619 (638)
T KOG1126|consen 602 KRLGNTDLALLHFSWALD 619 (638)
T ss_pred HHHccchHHHHhhHHHhc
Confidence 777777777776665543
No 50
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.19 E-value=1.5e-07 Score=90.79 Aligned_cols=161 Identities=13% Similarity=0.141 Sum_probs=124.5
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 042546 417 ALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDK 496 (671)
Q Consensus 417 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 496 (671)
.+-+.|++++|++.|-.+...= .-+..+...+.+.|....+...|.+++.+.... ++.|+.....|...|-+.|+-.+
T Consensus 533 t~e~~~~ldeald~f~klh~il-~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksq 610 (840)
T KOG2003|consen 533 TAEALGNLDEALDCFLKLHAIL-LNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQ 610 (840)
T ss_pred cHHHhcCHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhh
Confidence 3567789999999887765321 345667777888888889999999988665433 35567788889999999999999
Q ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHH
Q 042546 497 AADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLL-VQRGFKDALSLLCL 575 (671)
Q Consensus 497 a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~-~~g~~~~A~~l~~~ 575 (671)
|.+.+-+--+ -++.+..|...|..-|....-+++|...|+... -+.|+..-|..||..|. +.|++.+|.++++.
T Consensus 611 afq~~ydsyr--yfp~nie~iewl~ayyidtqf~ekai~y~ekaa---liqp~~~kwqlmiasc~rrsgnyqka~d~yk~ 685 (840)
T KOG2003|consen 611 AFQCHYDSYR--YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAA---LIQPNQSKWQLMIASCFRRSGNYQKAFDLYKD 685 (840)
T ss_pred hhhhhhhccc--ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHH---hcCccHHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 9988765433 456678888888888888888999999998875 47899999999987665 48999999999998
Q ss_pred HHhCCCCCCH
Q 042546 576 MKDHGFPPFV 585 (671)
Q Consensus 576 m~~~~~~p~~ 585 (671)
..+. ++-|.
T Consensus 686 ~hrk-fpedl 694 (840)
T KOG2003|consen 686 IHRK-FPEDL 694 (840)
T ss_pred HHHh-Cccch
Confidence 8654 33343
No 51
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.15 E-value=2.1e-08 Score=101.73 Aligned_cols=195 Identities=10% Similarity=-0.035 Sum_probs=88.0
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 042546 301 ESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEM-EMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLR 379 (671)
Q Consensus 301 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~ 379 (671)
..+|.++-..|+-.++.+.|++.|++..+. .| ...+|+.+-.-+.....+|.|..-|+..+ ..|...||+
T Consensus 421 PesWca~GNcfSLQkdh~~Aik~f~RAiQl--dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al----~~~~rhYnA--- 491 (638)
T KOG1126|consen 421 PESWCALGNCFSLQKDHDTAIKCFKRAIQL--DPRFAYAYTLLGHESIATEEFDKAMKSFRKAL----GVDPRHYNA--- 491 (638)
T ss_pred cHHHHHhcchhhhhhHHHHHHHHHHHhhcc--CCccchhhhhcCChhhhhHHHHhHHHHHHhhh----cCCchhhHH---
Confidence 355555555555555555555555554443 23 34444444444445555555555554433 122222221
Q ss_pred HHHhcCcccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 042546 380 KIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKK 459 (671)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 459 (671)
|--+.-.|.|.++++.|+-.|+...+.+ +.+.+....+...+-+.|+.
T Consensus 492 -------------------------------wYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~ 539 (638)
T KOG1126|consen 492 -------------------------------WYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRK 539 (638)
T ss_pred -------------------------------HHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhh
Confidence 2233334455555555555555554433 33444444444445555555
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHH
Q 042546 460 DEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHA-GYAIDLLVNTYCSKNRAIDACKFVH 538 (671)
Q Consensus 460 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~ 538 (671)
|+|++++++..... ..|+..---....+...++.++|+..++++++ +.|+ ...|..+...|.+.|+.+.|..-|.
T Consensus 540 d~AL~~~~~A~~ld-~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~---~vP~es~v~~llgki~k~~~~~~~Al~~f~ 615 (638)
T KOG1126|consen 540 DKALQLYEKAIHLD-PKNPLCKYHRASILFSLGRYVEALQELEELKE---LVPQESSVFALLGKIYKRLGNTDLALLHFS 615 (638)
T ss_pred hHHHHHHHHHHhcC-CCCchhHHHHHHHHHhhcchHHHHHHHHHHHH---hCcchHHHHHHHHHHHHHHccchHHHHhhH
Confidence 55555555554332 12222222223333444455555555555543 2222 2333444444555555555544444
Q ss_pred HH
Q 042546 539 NC 540 (671)
Q Consensus 539 ~m 540 (671)
-+
T Consensus 616 ~A 617 (638)
T KOG1126|consen 616 WA 617 (638)
T ss_pred HH
Confidence 44
No 52
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.14 E-value=1.4e-05 Score=81.26 Aligned_cols=361 Identities=14% Similarity=0.065 Sum_probs=263.3
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHccCChHHHHHHHHH----HHHcCCCCCHHHHHHHH
Q 042546 268 DLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDE----MRSKGYEMEMETCVKVL 343 (671)
Q Consensus 268 ~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~----m~~~g~~p~~~t~~~li 343 (671)
.++..+.+. .-++.|.++++...+ .++.+...|-+-...=-.+|+.+...++.++ +...|+..+..-|-.=.
T Consensus 411 dLwlAlarL--etYenAkkvLNkaRe--~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eA 486 (913)
T KOG0495|consen 411 DLWLALARL--ETYENAKKVLNKARE--IIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEA 486 (913)
T ss_pred HHHHHHHHH--HHHHHHHHHHHHHHh--hCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHH
Confidence 344444444 567788888888874 4577888888777777788888888887754 44568888888888777
Q ss_pred HHHHhCCChHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 042546 344 GRFSERNMVKEAVDLYEFAMACKNKPS--VNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISV 421 (671)
Q Consensus 344 ~~~~~~g~~~~a~~l~~~m~~~g~~p~--~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 421 (671)
..|-..|.+-.+..+......-|+.-. ..||..--..|.+.+..+ .+..++.... .-.+.+...|......=-..
T Consensus 487 e~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~--carAVya~al-qvfp~k~slWlra~~~ek~h 563 (913)
T KOG0495|consen 487 EACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIE--CARAVYAHAL-QVFPCKKSLWLRAAMFEKSH 563 (913)
T ss_pred HHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHH--HHHHHHHHHH-hhccchhHHHHHHHHHHHhc
Confidence 778888888888888777776666543 345665556665555433 2333333332 22445556777777766777
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 042546 422 GRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCF 501 (671)
Q Consensus 422 g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~ 501 (671)
|..++-..+|++....- +.....|-....-+-..|++..|..++....+... -+...|-+-+..-..+.+++.|..+|
T Consensus 564 gt~Esl~Allqkav~~~-pkae~lwlM~ake~w~agdv~~ar~il~~af~~~p-nseeiwlaavKle~en~e~eraR~ll 641 (913)
T KOG0495|consen 564 GTRESLEALLQKAVEQC-PKAEILWLMYAKEKWKAGDVPAARVILDQAFEANP-NSEEIWLAAVKLEFENDELERARDLL 641 (913)
T ss_pred CcHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCC-CcHHHHHHHHHHhhccccHHHHHHHH
Confidence 88888888998887653 44556777777888889999999999998887753 26677888888889999999999999
Q ss_pred HHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 042546 502 QKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPW-HTTYEELIKNLLVQRGFKDALSLLCLMKDHG 580 (671)
Q Consensus 502 ~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~ 580 (671)
.+... ..|+...|.--+..---.+..++|.+++++..+.+ |+ ...|-.+-+-+-+.++++.|.+.|..-.+
T Consensus 642 akar~---~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~f---p~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k-- 713 (913)
T KOG0495|consen 642 AKARS---ISGTERVWMKSANLERYLDNVEEALRLLEEALKSF---PDFHKLWLMLGQIEEQMENIEMAREAYLQGTK-- 713 (913)
T ss_pred HHHhc---cCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhC---CchHHHHHHHhHHHHHHHHHHHHHHHHHhccc--
Confidence 98854 56777777766666666789999999998888643 33 34555666667778888888887765443
Q ss_pred CCCCHHHHHHHH----HhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhchHh
Q 042546 581 FPPFVDPFIKYV----SKSGTSDDAIAFLKGMTSKRFPSMSVVLCLFAAFFQARRHSEAQDLLSKCPRY 645 (671)
Q Consensus 581 ~~p~~~t~~~~l----~~~g~~~~A~~~~~~m~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 645 (671)
.-|+...+.-.+ .+.|.+-.|..+++...-+.|.+...|...|.+=.+.|+.+.|..+..+..+.
T Consensus 714 ~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe 782 (913)
T KOG0495|consen 714 KCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQE 782 (913)
T ss_pred cCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 346655553333 46788999999999988888889999999999999999999998877665443
No 53
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.13 E-value=5.4e-08 Score=92.75 Aligned_cols=165 Identities=12% Similarity=0.089 Sum_probs=104.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 042546 409 AMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGH 488 (671)
Q Consensus 409 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~ 488 (671)
..+..+...|...|++++|.+.+++..+.. +.+...+..+...|...|++++|.+.+++..+.. +.+...+..+...+
T Consensus 32 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~ 109 (234)
T TIGR02521 32 KIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFL 109 (234)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHH
Confidence 456666777777788888888877776543 3445666777777777777777777777776654 23445666666777
Q ss_pred HhcCCHHHHHHHHHHHHHcCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 042546 489 CVAGDLDKAADCFQKMVEKEGT-SHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFK 567 (671)
Q Consensus 489 ~~~g~~~~a~~~~~~m~~~~g~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~ 567 (671)
...|++++|.+.+++..+ ... ......+..+...|...|++++|...|.+.... .+.+...+..+...+...|+++
T Consensus 110 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~ 186 (234)
T TIGR02521 110 CQQGKYEQAMQQFEQAIE-DPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQI--DPQRPESLLELAELYYLRGQYK 186 (234)
T ss_pred HHcccHHHHHHHHHHHHh-ccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCChHHHHHHHHHHHHcCCHH
Confidence 777777777777777765 321 223344555566666677777777777666542 1223345555555566666666
Q ss_pred HHHHHHHHHHh
Q 042546 568 DALSLLCLMKD 578 (671)
Q Consensus 568 ~A~~l~~~m~~ 578 (671)
+|.+.+++..+
T Consensus 187 ~A~~~~~~~~~ 197 (234)
T TIGR02521 187 DARAYLERYQQ 197 (234)
T ss_pred HHHHHHHHHHH
Confidence 66666665554
No 54
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.12 E-value=5.1e-08 Score=92.93 Aligned_cols=198 Identities=14% Similarity=0.107 Sum_probs=160.4
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHH
Q 042546 441 ASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLL 520 (671)
Q Consensus 441 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~l 520 (671)
.....+..+...|...|++++|.+.+++..+.. +.+...+..+...+...|++++|.+.+++..+ .. +.+...+..+
T Consensus 29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~-~~-~~~~~~~~~~ 105 (234)
T TIGR02521 29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALT-LN-PNNGDVLNNY 105 (234)
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-hC-CCCHHHHHHH
Confidence 345677888899999999999999999998764 33567788899999999999999999999987 33 3355677788
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH----HHHHHHHhcC
Q 042546 521 VNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVD----PFIKYVSKSG 596 (671)
Q Consensus 521 i~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~----t~~~~l~~~g 596 (671)
...|...|++++|.+.|.+.............+..+...+...|++++|.+.+++..+. .|+.. .+...+...|
T Consensus 106 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~ 183 (234)
T TIGR02521 106 GTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQI--DPQRPESLLELAELYYLRG 183 (234)
T ss_pred HHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCChHHHHHHHHHHHHcC
Confidence 88999999999999999999763222234456777888899999999999999998864 34322 2245667899
Q ss_pred ChHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhch
Q 042546 597 TSDDAIAFLKGMTSKRFPSMSVVLCLFAAFFQARRHSEAQDLLSKCP 643 (671)
Q Consensus 597 ~~~~A~~~~~~m~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 643 (671)
++++|...+++.....+.+...+..+...+...|+.++|..+.+.+.
T Consensus 184 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 230 (234)
T TIGR02521 184 QYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQ 230 (234)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 99999999999888755677888888999999999999999887765
No 55
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.12 E-value=1.9e-06 Score=82.65 Aligned_cols=292 Identities=13% Similarity=0.062 Sum_probs=192.3
Q ss_pred HHHHHhCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCC
Q 042546 272 FVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNM 351 (671)
Q Consensus 272 ~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~ 351 (671)
.+.+...|++..|++...+-.+. + +-....|..-..+--+.|+.+.+-.++.+..+.--.++...+-+........|+
T Consensus 91 gl~~l~eG~~~qAEkl~~rnae~-~-e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d 168 (400)
T COG3071 91 GLLKLFEGDFQQAEKLLRRNAEH-G-EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRD 168 (400)
T ss_pred HHHHHhcCcHHHHHHHHHHhhhc-C-cchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCC
Confidence 34444459999999998886642 2 344566666677888889999999999998887445667777778888889999
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCCCCHH-------HHHHHHHHHHhcCCH
Q 042546 352 VKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDA-------MLNSVLKALISVGRM 424 (671)
Q Consensus 352 ~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~li~~~~~~g~~ 424 (671)
.+.|..-..++.+.+.. +.........+|.+.|. ......++..+.+.+.-.|.. +|+.++.-....+..
T Consensus 169 ~~aA~~~v~~ll~~~pr-~~~vlrLa~r~y~~~g~--~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~ 245 (400)
T COG3071 169 YPAARENVDQLLEMTPR-HPEVLRLALRAYIRLGA--WQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGS 245 (400)
T ss_pred chhHHHHHHHHHHhCcC-ChHHHHHHHHHHHHhcc--HHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccc
Confidence 99999988888765433 33445666666666663 334556666666666655543 466666555555555
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 042546 425 GECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKM 504 (671)
Q Consensus 425 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 504 (671)
+.-...++...+. .+.++..-.+++.-+.++|+.++|.++..+..+.+..|+..+ .-.+.+.++.+.-.+..+.-
T Consensus 246 ~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~----~~~~l~~~d~~~l~k~~e~~ 320 (400)
T COG3071 246 EGLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCR----LIPRLRPGDPEPLIKAAEKW 320 (400)
T ss_pred hHHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHH----HHhhcCCCCchHHHHHHHHH
Confidence 5544445444332 234455556666777777777777777777777665555222 22345556666555555555
Q ss_pred HHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 042546 505 VEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKD 578 (671)
Q Consensus 505 ~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 578 (671)
.+..+-.| ..+.+|-..|.+.+.+.+|...|+...+ ..|+..+|+.+-+++.+.|+..+|.+++++...
T Consensus 321 l~~h~~~p--~L~~tLG~L~~k~~~w~kA~~~leaAl~---~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 321 LKQHPEDP--LLLSTLGRLALKNKLWGKASEALEAALK---LRPSASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred HHhCCCCh--hHHHHHHHHHHHhhHHHHHHHHHHHHHh---cCCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 44344444 4566777777777777777777775543 467777777777777777777777777776553
No 56
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.09 E-value=1.4e-06 Score=84.77 Aligned_cols=212 Identities=12% Similarity=0.022 Sum_probs=166.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Q 042546 444 NMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNT 523 (671)
Q Consensus 444 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~ 523 (671)
.|...+.+-|+-.++.|+|...|++..+.+ +.....|+.|.+-|....+...|.+-++...+ -.+-|-..|-.|-++
T Consensus 331 ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvd--i~p~DyRAWYGLGQa 407 (559)
T KOG1155|consen 331 ETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRRAVD--INPRDYRAWYGLGQA 407 (559)
T ss_pred cceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHHHHh--cCchhHHHHhhhhHH
Confidence 344556667778889999999999998765 33567799999999999999999999999987 234578889999999
Q ss_pred HHhcCCHHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH---HHHHHHhcCChH
Q 042546 524 YCSKNRAIDACKFVHNCVREYDLKP-WHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDP---FIKYVSKSGTSD 599 (671)
Q Consensus 524 ~~~~g~~~~A~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~t---~~~~l~~~g~~~ 599 (671)
|.-.+...-|.-.|++... ++| |...|.+|-.+|.+.++.++|++.|+.....|-. +... +..++-+.++.+
T Consensus 408 Yeim~Mh~YaLyYfqkA~~---~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dt-e~~~l~~LakLye~l~d~~ 483 (559)
T KOG1155|consen 408 YEIMKMHFYALYYFQKALE---LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDT-EGSALVRLAKLYEELKDLN 483 (559)
T ss_pred HHHhcchHHHHHHHHHHHh---cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcccc-chHHHHHHHHHHHHHHhHH
Confidence 9999999999999999875 444 6789999999999999999999999998875533 2222 357778899999
Q ss_pred HHHHHHHHhhh----CCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHhchHhhhccHHHHHHHHhhhcC
Q 042546 600 DAIAFLKGMTS----KRFPSM---SVVLCLFAAFFQARRHSEAQDLLSKCPRYVRNHADVLNLLYSKKSG 662 (671)
Q Consensus 600 ~A~~~~~~m~~----~~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~l~~~m~~~ 662 (671)
+|..+++.-.. .+..+. ..-.-|..-+.+.+++++|..............+++..|+.+....
T Consensus 484 eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~~~e~eeak~LlReir~~ 553 (559)
T KOG1155|consen 484 EAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKGETECEEAKALLREIRKI 553 (559)
T ss_pred HHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcCCchHHHHHHHHHHHHHh
Confidence 99998877655 122222 2333366778899999999998887776666678888888877543
No 57
>PRK12370 invasion protein regulator; Provisional
Probab=99.09 E-value=9.6e-08 Score=102.81 Aligned_cols=190 Identities=10% Similarity=-0.033 Sum_probs=102.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHH
Q 042546 410 MLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGD-KMWVSLIKGH 488 (671)
Q Consensus 410 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~-~~~~~li~~~ 488 (671)
.+..+-..+...|++++|...|++..+.+ +.+...|..+...+...|++++|...+++..+.. |+. ..+..++..+
T Consensus 340 a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~--P~~~~~~~~~~~~~ 416 (553)
T PRK12370 340 ALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLD--PTRAAAGITKLWIT 416 (553)
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCChhhHHHHHHHH
Confidence 34455555666677777777777766654 3345566666667777777777777777776653 332 2222333345
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCH
Q 042546 489 CVAGDLDKAADCFQKMVEKEGTSH-AGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWH-TTYEELIKNLLVQRGF 566 (671)
Q Consensus 489 ~~~g~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~-~~~~~li~~~~~~g~~ 566 (671)
...|++++|.+.+++..+ .. .| +...+..+..+|...|+.++|...+.++... .|+. ...+.+...|...|
T Consensus 417 ~~~g~~eeA~~~~~~~l~-~~-~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g-- 489 (553)
T PRK12370 417 YYHTGIDDAIRLGDELRS-QH-LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ---EITGLIAVNLLYAEYCQNS-- 489 (553)
T ss_pred HhccCHHHHHHHHHHHHH-hc-cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc---cchhHHHHHHHHHHHhccH--
Confidence 556677777777776654 22 23 2333555556666777777777777665432 2332 23334444445555
Q ss_pred HHHHHHHHHHHhCC-CCCCHH-HHHHHHHhcCChHHHHHHHHHhhh
Q 042546 567 KDALSLLCLMKDHG-FPPFVD-PFIKYVSKSGTSDDAIAFLKGMTS 610 (671)
Q Consensus 567 ~~A~~l~~~m~~~~-~~p~~~-t~~~~l~~~g~~~~A~~~~~~m~~ 610 (671)
++|...++.+.+.. ..|... .+-..+.-.|+-+.+... +++.+
T Consensus 490 ~~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~ 534 (553)
T PRK12370 490 ERALPTIREFLESEQRIDNNPGLLPLVLVAHGEAIAEKMW-NKFKN 534 (553)
T ss_pred HHHHHHHHHHHHHhhHhhcCchHHHHHHHHHhhhHHHHHH-HHhhc
Confidence 35555555544311 112111 123334445555555554 55554
No 58
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.08 E-value=1.8e-05 Score=77.36 Aligned_cols=433 Identities=12% Similarity=0.065 Sum_probs=256.7
Q ss_pred CCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHH
Q 042546 141 ESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRNKMTEKFEKEGLESDLEK 220 (671)
Q Consensus 141 ~~~~~~A~~~f~~m~~~~~~~~~~~~~n~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~~~ 220 (671)
-|++.-|+++|+.--+ ..|+...|++.|..=.+...++.|..+|++.+-. .|++.+|.--..-=-+.|...-+..
T Consensus 154 LgNi~gaRqiferW~~---w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~ 228 (677)
T KOG1915|consen 154 LGNIAGARQIFERWME---WEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARS 228 (677)
T ss_pred hcccHHHHHHHHHHHc---CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHH
Confidence 4889999999987654 5599999999999999999999999999998765 5899888888777777777776665
Q ss_pred HHHHHHcCCCCChHHHHHHHHHHHHhcCCChhHHHHHHhhcccccChHHHHHHHH--HhCCChHHHHHHHHHHHHcCCCC
Q 042546 221 LKGIFATGSIDNSIEKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVD--KLGDEPKKALIFFRWAEESGFVK 298 (671)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~A~~~f~~~~~~~~~~ 298 (671)
+.+.-.+.-.++.. ...++..... ..+...+.|.-+|+-.... ++
T Consensus 229 VyerAie~~~~d~~-------------------------------~e~lfvaFA~fEe~qkE~ERar~iykyAld~--~p 275 (677)
T KOG1915|consen 229 VYERAIEFLGDDEE-------------------------------AEILFVAFAEFEERQKEYERARFIYKYALDH--IP 275 (677)
T ss_pred HHHHHHHHhhhHHH-------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cC
Confidence 54432221111110 0011111111 1125666677777665542 23
Q ss_pred CC--HHHHHHHHHHHHccCChHHHHHH--------HHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCC
Q 042546 299 HD--ESSYNAMASVLGREDCIDRFWKV--------LDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNK 368 (671)
Q Consensus 299 ~~--~~~~~~li~~~~~~g~~~~A~~~--------~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~g~~ 368 (671)
.+ ...|......=-+.|+.....+. ++.+.+.+ +-|-.+|--.+..-...|+.+...++|+..... +.
T Consensus 276 k~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vp 353 (677)
T KOG1915|consen 276 KGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VP 353 (677)
T ss_pred cccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CC
Confidence 33 44555555554555654443332 33444432 346778888888888889999999999988743 33
Q ss_pred CCH--HHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 042546 369 PSV--NCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMK 446 (671)
Q Consensus 369 p~~--~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~ 446 (671)
|-. ..|.-.|-.+. |-.+-.=....+++.+.++|+...+ =++....|+
T Consensus 354 p~~ekr~W~RYIYLWi-----------------------------nYalyeEle~ed~ertr~vyq~~l~-lIPHkkFtF 403 (677)
T KOG1915|consen 354 PASEKRYWRRYIYLWI-----------------------------NYALYEELEAEDVERTRQVYQACLD-LIPHKKFTF 403 (677)
T ss_pred chhHHHHHHHHHHHHH-----------------------------HHHHHHHHHhhhHHHHHHHHHHHHh-hcCcccchH
Confidence 311 11111111110 1111111235667777777776665 223344455
Q ss_pred HHHHHHHH----hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 042546 447 SKIAFRLS----SAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVN 522 (671)
Q Consensus 447 ~~li~~~~----~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~ 522 (671)
.-+=-+|+ ++.++..|.+++.... |.-|-..+|...|..=.+.+++|.+..++++..+ .+ +-|..+|.-...
T Consensus 404 aKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle-~~-Pe~c~~W~kyaE 479 (677)
T KOG1915|consen 404 AKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLE-FS-PENCYAWSKYAE 479 (677)
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHh-cC-hHhhHHHHHHHH
Confidence 44433333 4667777777777655 3467777777777777777777888888777766 32 225556666555
Q ss_pred HHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCHHHHHHHH-----HhcC
Q 042546 523 TYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGF-PPFVDPFIKYV-----SKSG 596 (671)
Q Consensus 523 ~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~-~p~~~t~~~~l-----~~~g 596 (671)
.=...|+.|.|..+|.-..++.........|.+.|+--...|.+++|..+++++.+..- .+...+|...= .+.|
T Consensus 480 lE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~kvWisFA~fe~s~~~~~~~ 559 (677)
T KOG1915|consen 480 LETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVKVWISFAKFEASASEGQED 559 (677)
T ss_pred HHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccchHHHhHHHHhccccccccc
Confidence 55667777888877777766544444555666666666667777888888777765421 11112221111 1223
Q ss_pred -----------ChHHHHHHHHHhhh--CCCCCHH----HHHHHHHHHHHcCCHHHHHHHHHhchHhhh
Q 042546 597 -----------TSDDAIAFLKGMTS--KRFPSMS----VVLCLFAAFFQARRHSEAQDLLSKCPRYVR 647 (671)
Q Consensus 597 -----------~~~~A~~~~~~m~~--~~~p~~~----~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 647 (671)
.+..|..+|++... +...+.. ......+.=...|...+...+-..||..+.
T Consensus 560 ~~~~~~e~~~~~~~~AR~iferAn~~~k~~~~KeeR~~LLEaw~~~E~~~G~~~d~~~V~s~mPk~vK 627 (677)
T KOG1915|consen 560 EDLAELEITDENIKRARKIFERANTYLKESTPKEERLMLLEAWKNMEETFGTEGDVERVQSKMPKKVK 627 (677)
T ss_pred cchhhhhcchhHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHhccHHHH
Confidence 46678888877654 1111122 223333444556777777777788887653
No 59
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.05 E-value=4.2e-06 Score=82.13 Aligned_cols=401 Identities=11% Similarity=0.038 Sum_probs=227.6
Q ss_pred CCChHHHHHHHHHHhhcCCCCCC-HHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCChhHH
Q 042546 141 ESSPDEARRFFNWVLEKESERLS-SKTYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVA-SHVRNKMTEKFEKEGLESDL 218 (671)
Q Consensus 141 ~~~~~~A~~~f~~m~~~~~~~~~-~~~~n~li~~~~~~g~~~~a~~l~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~~ 218 (671)
.|.+++|.+.+++..+ ..|| ++-|...-.+|...|+++++.+---+.++. .|+ +-.+..--+++-..|+++++
T Consensus 128 ~kkY~eAIkyY~~AI~---l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl--~P~Y~KAl~RRA~A~E~lg~~~ea 202 (606)
T KOG0547|consen 128 NKKYDEAIKYYTQAIE---LCPDEPIFYSNRAACYESLGDWEKVIEDCTKALEL--NPDYVKALLRRASAHEQLGKFDEA 202 (606)
T ss_pred cccHHHHHHHHHHHHh---cCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhc--CcHHHHHHHHHHHHHHhhccHHHH
Confidence 5899999999999987 3477 788999999999999999988766655544 444 23344444677788888877
Q ss_pred HH---HHHHHHcCCCCChHHHHHHHHHHHHhcCCChhHHHHHHh--hcccccChHHHHHHHHHhCCChHHHHHHHHHHHH
Q 042546 219 EK---LKGIFATGSIDNSIEKVASRICKVVRSDIWGDDVERQLR--DLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEE 293 (671)
Q Consensus 219 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~f~~~~~ 293 (671)
.. +..++............-..+.... -+.....+. +..+-+++.++..|+..+..++.-..
T Consensus 203 l~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a-----~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~-------- 269 (606)
T KOG0547|consen 203 LFDVTVLCILEGFQNASIEPMAERVLKKQA-----MKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLF-------- 269 (606)
T ss_pred HHhhhHHHHhhhcccchhHHHHHHHHHHHH-----HHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccc--------
Confidence 52 2222222221111111111100000 011122222 22334677777777766532221110
Q ss_pred cCCCCCCHHHHHHHHHHH----Hcc-CChHHHHHHHHHHHHcC-CCC-----CHH------HHHHHHHHHHhCCChHHHH
Q 042546 294 SGFVKHDESSYNAMASVL----GRE-DCIDRFWKVLDEMRSKG-YEM-----EME------TCVKVLGRFSERNMVKEAV 356 (671)
Q Consensus 294 ~~~~~~~~~~~~~li~~~----~~~-g~~~~A~~~~~~m~~~g-~~p-----~~~------t~~~li~~~~~~g~~~~a~ 356 (671)
..+...+...+..++ ... ..++.|.+.+.+-.... ..+ |.. +...--.-+.-.|+.-.|.
T Consensus 270 ---~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~ 346 (606)
T KOG0547|consen 270 ---DNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQ 346 (606)
T ss_pred ---cCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhh
Confidence 001111111111111 110 12233333332211100 000 100 1111111112234444444
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 042546 357 DLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEE 436 (671)
Q Consensus 357 ~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 436 (671)
.-|+...+... . +...|--+-.+|....+.++..+.|+...+
T Consensus 347 ~d~~~~I~l~~-------------------------------------~-~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ 388 (606)
T KOG0547|consen 347 EDFDAAIKLDP-------------------------------------A-FNSLYIKRAAAYADENQSEKMWKDFNKAED 388 (606)
T ss_pred hhHHHHHhcCc-------------------------------------c-cchHHHHHHHHHhhhhccHHHHHHHHHHHh
Confidence 44444443211 1 111255566678888888888889988887
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHH
Q 042546 437 GGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYA 516 (671)
Q Consensus 437 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~ 516 (671)
.+ +-|..+|..-..++.-.+++++|..=|++.+... +-+...|.-+--+.-+.+.++++...|++.++ .++--...
T Consensus 389 ld-p~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kk--kFP~~~Ev 464 (606)
T KOG0547|consen 389 LD-PENPDVYYHRGQMRFLLQQYEEAIADFQKAISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKK--KFPNCPEV 464 (606)
T ss_pred cC-CCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCCCCchH
Confidence 65 4566677777777777888999999998887653 22455666666666788899999999999887 35555667
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCC-------HH--HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH--
Q 042546 517 IDLLVNTYCSKNRAIDACKFVHNCVREYDLKPW-------HT--TYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFV-- 585 (671)
Q Consensus 517 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~-------~~--~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~-- 585 (671)
|+.....+...++++.|.+.|+...+ +.|+ .. +--+++..- =.+++..|.+++++..+. .|-.
T Consensus 465 y~~fAeiLtDqqqFd~A~k~YD~ai~---LE~~~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~--Dpkce~ 538 (606)
T KOG0547|consen 465 YNLFAEILTDQQQFDKAVKQYDKAIE---LEPREHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIEL--DPKCEQ 538 (606)
T ss_pred HHHHHHHHhhHHhHHHHHHHHHHHHh---hccccccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHcc--CchHHH
Confidence 88888888889999999999988764 2333 11 111222111 247888999999988764 4443
Q ss_pred --HHHHHHHHhcCChHHHHHHHHHhhh
Q 042546 586 --DPFIKYVSKSGTSDDAIAFLKGMTS 610 (671)
Q Consensus 586 --~t~~~~l~~~g~~~~A~~~~~~m~~ 610 (671)
.++.....+.|++++|+++|++-..
T Consensus 539 A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 539 AYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 3445555788999999999987654
No 60
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.00 E-value=5.9e-05 Score=76.76 Aligned_cols=439 Identities=10% Similarity=0.016 Sum_probs=249.7
Q ss_pred HHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHH-cCCCCChHHHHHHHHHH
Q 042546 165 KTYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRNKMTEKFEKEGLESDLEKLKGIFA-TGSIDNSIEKVASRICK 243 (671)
Q Consensus 165 ~~~n~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 243 (671)
..|++|-+-|.+.|.++.|.++|++-.+. ..++.-|+.+.++|+.-....-+..+. +-. +.........+...+..
T Consensus 249 ~Lw~SLAdYYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me-~a~~~~~n~ed~~dl~~~~a~ 325 (835)
T KOG2047|consen 249 FLWCSLADYYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKME-LADEESGNEEDDVDLELHMAR 325 (835)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHh-hhhhcccChhhhhhHHHHHHH
Confidence 56889999999999999999999887765 336667788888887653211111111 100 01111100000000000
Q ss_pred HHhcC-CChhHHHHHHhhcccccChHHHHHH---HHHhCCChHHHHHHHHHHHHcCCCCCC------HHHHHHHHHHHHc
Q 042546 244 VVRSD-IWGDDVERQLRDLNVTFSNDLVKFV---VDKLGDEPKKALIFFRWAEESGFVKHD------ESSYNAMASVLGR 313 (671)
Q Consensus 244 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~A~~~f~~~~~~~~~~~~------~~~~~~li~~~~~ 313 (671)
+-.-- ....-+-..+.+ -.++.+... .....|+..+-..+|.+....- .|- ...|..+.+.|-.
T Consensus 326 ~e~lm~rr~~~lNsVlLR----Qn~~nV~eW~kRV~l~e~~~~~~i~tyteAv~~v--dP~ka~Gs~~~Lw~~faklYe~ 399 (835)
T KOG2047|consen 326 FESLMNRRPLLLNSVLLR----QNPHNVEEWHKRVKLYEGNAAEQINTYTEAVKTV--DPKKAVGSPGTLWVEFAKLYEN 399 (835)
T ss_pred HHHHHhccchHHHHHHHh----cCCccHHHHHhhhhhhcCChHHHHHHHHHHHHcc--CcccCCCChhhHHHHHHHHHHh
Confidence 00000 000000011111 111222222 2223466666677777665421 221 2457777777888
Q ss_pred cCChHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcccHH
Q 042546 314 EDCIDRFWKVLDEMRSKGYEME---METCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMR 390 (671)
Q Consensus 314 ~g~~~~A~~~~~~m~~~g~~p~---~~t~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~ 390 (671)
+|+++.|..+|++..+-..+-- ..+|..-...=.+..+++.|+.+.+.... .|.... + .+...+.+-..
T Consensus 400 ~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~---vP~~~~----~-~~yd~~~pvQ~ 471 (835)
T KOG2047|consen 400 NGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATH---VPTNPE----L-EYYDNSEPVQA 471 (835)
T ss_pred cCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhc---CCCchh----h-hhhcCCCcHHH
Confidence 8888888888887766533211 23333333334455566777776665542 333211 1 11122211110
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 042546 391 LFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHME 470 (671)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 470 (671)
+ +..+..+|...++.--..|-++....+++.+.+..+.......| ...-+-.+.-++++.+++++=.
T Consensus 472 ---r---------lhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~N-yAmfLEeh~yfeesFk~YErgI 538 (835)
T KOG2047|consen 472 ---R---------LHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIIN-YAMFLEEHKYFEESFKAYERGI 538 (835)
T ss_pred ---H---------HHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHH-HHHHHHhhHHHHHHHHHHHcCC
Confidence 1 11123456667777777889999999999998766432222222 2222335666889999888655
Q ss_pred HCCCCCCHH-HHHHHHHHHHh---cCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHHHHHHhC
Q 042546 471 ASGSDVGDK-MWVSLIKGHCV---AGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNT--YCSKNRAIDACKFVHNCVREY 544 (671)
Q Consensus 471 ~~g~~~~~~-~~~~li~~~~~---~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~--~~~~g~~~~A~~~~~~m~~~~ 544 (671)
..--.|++. .|++-+.-+.+ ...++.|..+|++..+ |++|...-+--|+-+ =-+.|....|+.++++...
T Consensus 539 ~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~--~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~-- 614 (835)
T KOG2047|consen 539 SLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD--GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATS-- 614 (835)
T ss_pred ccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh--
Confidence 443355553 47776666544 3478999999999987 777654332222211 1246889999999999875
Q ss_pred CCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH------HHHHHHhcCChHHHHHHHHHhhhC-CC-C
Q 042546 545 DLKPWH--TTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDP------FIKYVSKSGTSDDAIAFLKGMTSK-RF-P 614 (671)
Q Consensus 545 ~~~p~~--~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~t------~~~~l~~~g~~~~A~~~~~~m~~~-~~-p 614 (671)
++++.. ..||..|.--+..=.+....++|++..+. -|+... |..+=++.|.++.|..++..-.+- .| .
T Consensus 615 ~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~--Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~ 692 (835)
T KOG2047|consen 615 AVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIES--LPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRV 692 (835)
T ss_pred cCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHh--CChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcC
Confidence 455543 47888887555544456677788888764 566543 344457899999999999877664 33 4
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHH
Q 042546 615 SMSVVLCLFAAFFQARRHSEAQDLL 639 (671)
Q Consensus 615 ~~~~~~~l~~~~~~~g~~~~A~~~~ 639 (671)
+...|.+.=.-=.++|+-+...+.+
T Consensus 693 ~~~fW~twk~FEvrHGnedT~keML 717 (835)
T KOG2047|consen 693 TTEFWDTWKEFEVRHGNEDTYKEML 717 (835)
T ss_pred ChHHHHHHHHHHHhcCCHHHHHHHH
Confidence 6778988888888999954444333
No 61
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.99 E-value=9.5e-06 Score=81.26 Aligned_cols=245 Identities=13% Similarity=0.082 Sum_probs=175.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 042546 409 AMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGH 488 (671)
Q Consensus 409 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~ 488 (671)
..+..-|.++...|+..+-..+=.+|.+.- +....+|-++..-|-..|+.++|.+.|.+...-. ..=...|-....+|
T Consensus 279 ~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~YYl~i~k~seARry~SKat~lD-~~fgpaWl~fghsf 356 (611)
T KOG1173|consen 279 PCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVGCYYLMIGKYSEARRYFSKATTLD-PTFGPAWLAFGHSF 356 (611)
T ss_pred chHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcC-ccccHHHHHHhHHh
Confidence 334445556677777666666666666543 5567888888888888899999999998876432 11235788888999
Q ss_pred HhcCCHHHHHHHHHHHHHcC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCC
Q 042546 489 CVAGDLDKAADCFQKMVEKE-G-TSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKP-WHTTYEELIKNLLVQRG 565 (671)
Q Consensus 489 ~~~g~~~~a~~~~~~m~~~~-g-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~ 565 (671)
+-.|.-|+|...+...-+.. | ..|.. | +---|.+.+..+.|.++|.+... +.| |....+-+--...+.+.
T Consensus 357 a~e~EhdQAmaaY~tAarl~~G~hlP~L--Y--lgmey~~t~n~kLAe~Ff~~A~a---i~P~Dplv~~Elgvvay~~~~ 429 (611)
T KOG1173|consen 357 AGEGEHDQAMAAYFTAARLMPGCHLPSL--Y--LGMEYMRTNNLKLAEKFFKQALA---IAPSDPLVLHELGVVAYTYEE 429 (611)
T ss_pred hhcchHHHHHHHHHHHHHhccCCcchHH--H--HHHHHHHhccHHHHHHHHHHHHh---cCCCcchhhhhhhheeehHhh
Confidence 99999999998887765411 1 12222 2 22246778899999999988864 334 45556666555566788
Q ss_pred HHHHHHHHHHHHhC---------CCCCCHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 042546 566 FKDALSLLCLMKDH---------GFPPFVDPFIKYVSKSGTSDDAIAFLKGMTSKRFPSMSVVLCLFAAFFQARRHSEAQ 636 (671)
Q Consensus 566 ~~~A~~l~~~m~~~---------~~~p~~~t~~~~l~~~g~~~~A~~~~~~m~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 636 (671)
+.+|..+|+..... -..|....+...+.+.+++++|+..++......+.+..+|.++.-.|...|+++.|.
T Consensus 430 y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Ai 509 (611)
T KOG1173|consen 430 YPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAI 509 (611)
T ss_pred hHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHH
Confidence 89999988876621 122333445677789999999999999999888889999999999999999999999
Q ss_pred HHHHhchHhhhccHHHHHHHHhhhcC
Q 042546 637 DLLSKCPRYVRNHADVLNLLYSKKSG 662 (671)
Q Consensus 637 ~~~~~m~~~~~~~~~~~~l~~~m~~~ 662 (671)
+.|++..--.++..-+.+++..+.+.
T Consensus 510 d~fhKaL~l~p~n~~~~~lL~~aie~ 535 (611)
T KOG1173|consen 510 DHFHKALALKPDNIFISELLKLAIED 535 (611)
T ss_pred HHHHHHHhcCCccHHHHHHHHHHHHh
Confidence 99998665444555566666665544
No 62
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.99 E-value=6.3e-07 Score=92.05 Aligned_cols=235 Identities=17% Similarity=0.112 Sum_probs=168.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CC-CCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CC-C
Q 042546 409 AMLNSVLKALISVGRMGECNKILKAMEEG-----GF-IASSN-MKSKIAFRLSSAGKKDEANEFMDHMEAS-----GS-D 475 (671)
Q Consensus 409 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g~-~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g~-~ 475 (671)
.+..-+..+|...|+++.|..+++...+. |. .|... ..+.+...|...+++.+|..+|+++... |- .
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 46666889999999999999999987653 21 23333 3344777889999999999999998642 21 1
Q ss_pred CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCC-CCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHhCC--C
Q 042546 476 VG-DKMWVSLIKGHCVAGDLDKAADCFQKMVEK----EGT-SHAGY-AIDLLVNTYCSKNRAIDACKFVHNCVREYD--L 546 (671)
Q Consensus 476 ~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~g~-~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--~ 546 (671)
|. ..+++.|-.+|.+.|++++|...+++..+- .|. .|.+. -++.+...|+..+++++|..+++...+... .
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~ 359 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP 359 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence 22 345777778899999999998888776541 122 22222 246667778899999999999987654322 2
Q ss_pred CCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhCC----C--CCCHHH----HHHHHHhcCChHHHHHHHHHhhh--
Q 042546 547 KPWH----TTYEELIKNLLVQRGFKDALSLLCLMKDHG----F--PPFVDP----FIKYVSKSGTSDDAIAFLKGMTS-- 610 (671)
Q Consensus 547 ~p~~----~~~~~li~~~~~~g~~~~A~~l~~~m~~~~----~--~p~~~t----~~~~l~~~g~~~~A~~~~~~m~~-- 610 (671)
.++. .+++.|-..|.+.|++++|.+++++..... - .+.... +...|.+.++.++|..+|.+...
T Consensus 360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~ 439 (508)
T KOG1840|consen 360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIM 439 (508)
T ss_pred cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 3333 488999999999999999999999876421 1 222222 24555678888888888876543
Q ss_pred --CCC--C-CHHHHHHHHHHHHHcCCHHHHHHHHHhch
Q 042546 611 --KRF--P-SMSVVLCLFAAFFQARRHSEAQDLLSKCP 643 (671)
Q Consensus 611 --~~~--p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 643 (671)
-++ | ...+|..|...|.+.|++++|.++-+...
T Consensus 440 ~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 440 KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 222 3 35679999999999999999999998865
No 63
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.91 E-value=5.9e-05 Score=72.70 Aligned_cols=316 Identities=12% Similarity=0.017 Sum_probs=199.9
Q ss_pred HHHHHHHHcc--CChHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 042546 305 NAMASVLGRE--DCIDRFWKVLDEMRSK-GYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKI 381 (671)
Q Consensus 305 ~~li~~~~~~--g~~~~A~~~~~~m~~~-g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~ 381 (671)
..-|.+++++ ++...|...+-.+... -++-|+.....+...+...|+.++|...|+..+- +.|+..+ .+
T Consensus 198 s~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~--~dpy~i~--~M---- 269 (564)
T KOG1174|consen 198 SKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLC--ANPDNVE--AM---- 269 (564)
T ss_pred HHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhh--CChhhhh--hH----
Confidence 3334444433 3444444444333332 2444677777888888888888888888887653 2232211 00
Q ss_pred HhcCcccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 042546 382 VVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDE 461 (671)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 461 (671)
..|..| +.+.|+.+....+...+.... .-....|-.-........+++.
T Consensus 270 ---------------------------D~Ya~L---L~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~r 318 (564)
T KOG1174|consen 270 ---------------------------DLYAVL---LGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFER 318 (564)
T ss_pred ---------------------------HHHHHH---HHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHH
Confidence 012222 245666666666666655321 1222333333444456778888
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 042546 462 ANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTS-HAGYAIDLLVNTYCSKNRAIDACKFVHNC 540 (671)
Q Consensus 462 A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m 540 (671)
|+.+-++-.+.. ..+...|-.=-..+...|++++|.-.|+.... +. .+..+|..|+.+|...|++.+|.-.-+..
T Consensus 319 AL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~---Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~ 394 (564)
T KOG1174|consen 319 ALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQM---LAPYRLEIYRGLFHSYLAQKRFKEANALANWT 394 (564)
T ss_pred HHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHh---cchhhHHHHHHHHHHHHhhchHHHHHHHHHHH
Confidence 888888877553 22334444444566778899999999988865 33 46778999999999999999987766655
Q ss_pred HHhCCCCCCHHHHHHHH-HHHH-hcCCHHHHHHHHHHHHhCCCCCCHH----HHHHHHHhcCChHHHHHHHHHhhhCCCC
Q 042546 541 VREYDLKPWHTTYEELI-KNLL-VQRGFKDALSLLCLMKDHGFPPFVD----PFIKYVSKSGTSDDAIAFLKGMTSKRFP 614 (671)
Q Consensus 541 ~~~~~~~p~~~~~~~li-~~~~-~~g~~~~A~~l~~~m~~~~~~p~~~----t~~~~l~~~g~~~~A~~~~~~m~~~~~p 614 (671)
.+- +.-+..+...+- ..+. ....-++|.+++++-.. +.|+.. .....+...|+.++++.+++..... .|
T Consensus 395 ~~~--~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~--~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~-~~ 469 (564)
T KOG1174|consen 395 IRL--FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLK--INPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLII-FP 469 (564)
T ss_pred HHH--hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhc--cCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhh-cc
Confidence 442 223344443331 1122 22334889999887764 466653 3356667899999999999987753 47
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHhchHhhhccHHHHHHHHhhhcCCCCCCC
Q 042546 615 SMSVVLCLFAAFFQARRHSEAQDLLSKCPRYVRNHADVLNLLYSKKSGGDSAPA 668 (671)
Q Consensus 615 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~l~~~m~~~g~~p~~ 668 (671)
|....+.|.+.+...+.+.+|.+.|.....--+.....++=+..|.+..-+||+
T Consensus 470 D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~Gl~~lEK~~~~~DA 523 (564)
T KOG1174|consen 470 DVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTLRGLRLLEKSDDESDA 523 (564)
T ss_pred ccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHHHHHHHHHhccCCCCc
Confidence 888999999999999999999999998765555566666666666665556653
No 64
>PRK12370 invasion protein regulator; Provisional
Probab=98.89 E-value=3.4e-06 Score=90.97 Aligned_cols=211 Identities=7% Similarity=-0.072 Sum_probs=151.2
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 042546 420 SVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAAD 499 (671)
Q Consensus 420 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~ 499 (671)
..+++++|...+++..+.. +-+...+..+...+...|++++|...|++..+.+ +.+...+..+...+...|++++|..
T Consensus 316 ~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~ 393 (553)
T PRK12370 316 KQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQ 393 (553)
T ss_pred cchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 3456899999999998875 5577888888888999999999999999998874 3346678888889999999999999
Q ss_pred HHHHHHHcCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 042546 500 CFQKMVEKEGTSHAG-YAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPW-HTTYEELIKNLLVQRGFKDALSLLCLMK 577 (671)
Q Consensus 500 ~~~~m~~~~g~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~l~~~m~ 577 (671)
.+++..+ ..|+. ..+..+...+...|++++|...+++.... ..|+ ...+..+...+...|+.++|.+.++++.
T Consensus 394 ~~~~Al~---l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~--~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~ 468 (553)
T PRK12370 394 TINECLK---LDPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQ--HLQDNPILLSMQVMFLSLKGKHELARKLTKEIS 468 (553)
T ss_pred HHHHHHh---cCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHh--ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhh
Confidence 9999987 33432 22333444566689999999999998753 2343 3446667778889999999999999876
Q ss_pred hCCCCCCHHHHHH----HHHhcCChHHHHHHHHHhhhCCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHhchH
Q 042546 578 DHGFPPFVDPFIK----YVSKSGTSDDAIAFLKGMTSKRF--PSMSVVLCLFAAFFQARRHSEAQDLLSKCPR 644 (671)
Q Consensus 578 ~~~~~p~~~t~~~----~l~~~g~~~~A~~~~~~m~~~~~--p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 644 (671)
.. .|+..+... .+...| ++|...++.+.+... +....+ +-..|.-.|+.+.+..+ +++.+
T Consensus 469 ~~--~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~ 534 (553)
T PRK12370 469 TQ--EITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKN 534 (553)
T ss_pred hc--cchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhc
Confidence 43 555444433 334445 588888877766321 222233 34455566777777766 66553
No 65
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.88 E-value=6.4e-06 Score=84.41 Aligned_cols=194 Identities=13% Similarity=0.084 Sum_probs=107.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 042546 415 LKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDL 494 (671)
Q Consensus 415 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 494 (671)
|.+......+.+|+.+++.+..+. .-..-|..+.+-|+..|+++.|.++|-+.- .++-.|..|.++|++
T Consensus 739 ieaai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw 807 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKW 807 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccH
Confidence 344455566667777776666542 222345566666777777777777665422 244456667777777
Q ss_pred HHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 042546 495 DKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLC 574 (671)
Q Consensus 495 ~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~ 574 (671)
++|.++-.+. .|-+.....|-+-..-+-+.|++.+|.+++-.+. .|+. -|..|-+.|..++.+++.+
T Consensus 808 ~da~kla~e~---~~~e~t~~~yiakaedldehgkf~eaeqlyiti~-----~p~~-----aiqmydk~~~~ddmirlv~ 874 (1636)
T KOG3616|consen 808 EDAFKLAEEC---HGPEATISLYIAKAEDLDEHGKFAEAEQLYITIG-----EPDK-----AIQMYDKHGLDDDMIRLVE 874 (1636)
T ss_pred HHHHHHHHHh---cCchhHHHHHHHhHHhHHhhcchhhhhheeEEcc-----CchH-----HHHHHHhhCcchHHHHHHH
Confidence 7776665554 3444445555555555566666666666664432 2332 3556666666666666665
Q ss_pred HHHhCCCCCCHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 042546 575 LMKDHGFPPFVDPFIKYVSKSGTSDDAIAFLKGMTSKRFPSMSVVLCLFAAFFQARRHSEAQDLLS 640 (671)
Q Consensus 575 ~m~~~~~~p~~~t~~~~l~~~g~~~~A~~~~~~m~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 640 (671)
+-.-.-+..+...|..-|...|++..|+.-|-+... |.+-++.|..++.|++|.++-+
T Consensus 875 k~h~d~l~dt~~~f~~e~e~~g~lkaae~~flea~d--------~kaavnmyk~s~lw~dayriak 932 (1636)
T KOG3616|consen 875 KHHGDHLHDTHKHFAKELEAEGDLKAAEEHFLEAGD--------FKAAVNMYKASELWEDAYRIAK 932 (1636)
T ss_pred HhChhhhhHHHHHHHHHHHhccChhHHHHHHHhhhh--------HHHHHHHhhhhhhHHHHHHHHh
Confidence 543222222223345555556666666655543322 4445555555566665555544
No 66
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.88 E-value=2.6e-05 Score=81.40 Aligned_cols=285 Identities=15% Similarity=0.113 Sum_probs=194.8
Q ss_pred CCChHHHHHHHHHHHHcCCCCCCHHH-HHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-h-----CC
Q 042546 278 GDEPKKALIFFRWAEESGFVKHDESS-YNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFS-E-----RN 350 (671)
Q Consensus 278 ~~~~~~A~~~f~~~~~~~~~~~~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~-~-----~g 350 (671)
.|+.++|++.+..-.. .-+|..+ .......+.+.|+.++|..++..+.+++ |+...|...+..+. . ..
T Consensus 17 ~g~~~~AL~~L~~~~~---~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~~~~~~ 91 (517)
T PF12569_consen 17 AGDYEEALEHLEKNEK---QILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQLQLSDE 91 (517)
T ss_pred CCCHHHHHHHHHhhhh---hCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhcccccc
Confidence 4999999999987653 2566555 4566788899999999999999999984 67666665555444 2 23
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 042546 351 MVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKI 430 (671)
Q Consensus 351 ~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 430 (671)
..+...++|+++...- |.......+.-.+. .|..=...+...+..+...|++ .+|+.+-..|......+-..++
T Consensus 92 ~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~-~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~i~~l 165 (517)
T PF12569_consen 92 DVEKLLELYDELAEKY--PRSDAPRRLPLDFL-EGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAIIESL 165 (517)
T ss_pred cHHHHHHHHHHHHHhC--ccccchhHhhcccC-CHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHHHHHHH
Confidence 5788888999886542 33322222211111 1111123455555556666765 3567777777766666556666
Q ss_pred HHHHHHC----C----------CCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCC
Q 042546 431 LKAMEEG----G----------FIASSN--MKSKIAFRLSSAGKKDEANEFMDHMEASGSDVG-DKMWVSLIKGHCVAGD 493 (671)
Q Consensus 431 ~~~m~~~----g----------~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~ 493 (671)
+...... + -+|... ++.-+...|-..|++++|++++++..+. .|+ +..|..-...+-+.|+
T Consensus 166 ~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilKh~G~ 243 (517)
T PF12569_consen 166 VEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARILKHAGD 243 (517)
T ss_pred HHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHCCC
Confidence 6665432 1 134443 4456677788999999999999998887 565 5568888888999999
Q ss_pred HHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHH------HH--HHHHHHHHhcCC
Q 042546 494 LDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHT------TY--EELIKNLLVQRG 565 (671)
Q Consensus 494 ~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~------~~--~~li~~~~~~g~ 565 (671)
+++|.+..+..++ ... -|...-+-.+..+.++|++++|.+++....+. +..|-.. .| .....+|.+.|+
T Consensus 244 ~~~Aa~~~~~Ar~-LD~-~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~-~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~ 320 (517)
T PF12569_consen 244 LKEAAEAMDEARE-LDL-ADRYINSKCAKYLLRAGRIEEAEKTASLFTRE-DVDPLSNLNDMQCMWFETECAEAYLRQGD 320 (517)
T ss_pred HHHHHHHHHHHHh-CCh-hhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCC-CCCcccCHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999977 322 36666677778888999999999999988764 4333322 23 344567888999
Q ss_pred HHHHHHHHHHHHh
Q 042546 566 FKDALSLLCLMKD 578 (671)
Q Consensus 566 ~~~A~~l~~~m~~ 578 (671)
+..|++-|....+
T Consensus 321 ~~~ALk~~~~v~k 333 (517)
T PF12569_consen 321 YGLALKRFHAVLK 333 (517)
T ss_pred HHHHHHHHHHHHH
Confidence 9999887776653
No 67
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.88 E-value=0.00014 Score=74.41 Aligned_cols=386 Identities=13% Similarity=0.038 Sum_probs=225.1
Q ss_pred CCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHH
Q 042546 141 ESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRNKMTEKFEKEGLESDLEK 220 (671)
Q Consensus 141 ~~~~~~A~~~f~~m~~~~~~~~~~~~~n~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~~~ 220 (671)
-|+-++|......-.. +-..+.++|..+--.+-...++++|++.|.....-+ +-|...+.-+--.=+..
T Consensus 54 lg~~~ea~~~vr~glr--~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~Qm-------- 122 (700)
T KOG1156|consen 54 LGKKEEAYELVRLGLR--NDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQM-------- 122 (700)
T ss_pred ccchHHHHHHHHHHhc--cCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHH--------
Confidence 4778888777665544 222567888877777777788889998888877653 12233332111111111
Q ss_pred HHHHHHcCCCCChHHHHHHHHHHHHhcCCChhHHHHHHhhcccccChHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCC
Q 042546 221 LKGIFATGSIDNSIEKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHD 300 (671)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~ 300 (671)
++++.....-.+..+. .+..
T Consensus 123 ----------------------------------------------------------Rd~~~~~~tr~~LLql--~~~~ 142 (700)
T KOG1156|consen 123 ----------------------------------------------------------RDYEGYLETRNQLLQL--RPSQ 142 (700)
T ss_pred ----------------------------------------------------------HhhhhHHHHHHHHHHh--hhhh
Confidence 2222222222222211 1344
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHHcC-CCCCHHHHHHHHHH------HHhCCChHHHHHHHHHHHhCCCCCCHHH
Q 042546 301 ESSYNAMASVLGREDCIDRFWKVLDEMRSKG-YEMEMETCVKVLGR------FSERNMVKEAVDLYEFAMACKNKPSVNC 373 (671)
Q Consensus 301 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~li~~------~~~~g~~~~a~~l~~~m~~~g~~p~~~~ 373 (671)
...|..+.-++--.|+...|..+.++..+.- -.|+...|...... ....|.+++|.+....-...
T Consensus 143 ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-------- 214 (700)
T KOG1156|consen 143 RASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-------- 214 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH--------
Confidence 5778888888888899999999998887764 24666666544333 34556666666665543321
Q ss_pred HHHHHHHHHhcCcccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH-H
Q 042546 374 CTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAF-R 452 (671)
Q Consensus 374 ~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~-~ 452 (671)
+++.+ ..--+-...+.+.+++++|..++..+..+. ||..-|.-.+. +
T Consensus 215 ---------------------i~Dkl---------a~~e~ka~l~~kl~~lEeA~~~y~~Ll~rn--Pdn~~Yy~~l~~~ 262 (700)
T KOG1156|consen 215 ---------------------IVDKL---------AFEETKADLLMKLGQLEEAVKVYRRLLERN--PDNLDYYEGLEKA 262 (700)
T ss_pred ---------------------HHHHH---------HHhhhHHHHHHHHhhHHhHHHHHHHHHhhC--chhHHHHHHHHHH
Confidence 00000 011223445688999999999999999874 77776665544 4
Q ss_pred HHhcCCHHHHH-HHHHHHHHCCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCH
Q 042546 453 LSSAGKKDEAN-EFMDHMEASGSDVGDKM-WVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRA 530 (671)
Q Consensus 453 ~~~~g~~~~A~-~~~~~m~~~g~~~~~~~-~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~ 530 (671)
+.+--+.-++. .+|....+. .|.... -..=++......-.+..-+++..+.+ .|+++- +..+...|-.-...
T Consensus 263 lgk~~d~~~~lk~ly~~ls~~--y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~-Kg~p~v---f~dl~SLyk~p~k~ 336 (700)
T KOG1156|consen 263 LGKIKDMLEALKALYAILSEK--YPRHECPRRLPLSVLNGEELKEIVDKYLRPLLS-KGVPSV---FKDLRSLYKDPEKV 336 (700)
T ss_pred HHHHhhhHHHHHHHHHHHhhc--CcccccchhccHHHhCcchhHHHHHHHHHHHhh-cCCCch---hhhhHHHHhchhHh
Confidence 43333333333 666665543 111111 00011111112333445556666666 676543 33344333332222
Q ss_pred HHHHHHHHHHHHh-CC------------CCCCHHHH--HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH----HHH
Q 042546 531 IDACKFVHNCVRE-YD------------LKPWHTTY--EELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPF----IKY 591 (671)
Q Consensus 531 ~~A~~~~~~m~~~-~~------------~~p~~~~~--~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~t~----~~~ 591 (671)
+--.++.-.+... .+ -.|....| -.++..+-+.|+++.|...++...++ .|+..-+ ...
T Consensus 337 ~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI 414 (700)
T KOG1156|consen 337 AFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARI 414 (700)
T ss_pred HHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHH
Confidence 2222222222110 01 14555544 45667788899999999999988854 6766544 377
Q ss_pred HHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhchHh
Q 042546 592 VSKSGTSDDAIAFLKGMTSKRFPSMSVVLCLFAAFFQARRHSEAQDLLSKCPRY 645 (671)
Q Consensus 592 l~~~g~~~~A~~~~~~m~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 645 (671)
+.+.|.+++|..++++....+.+|...=.--..-..++.+.++|.++...-...
T Consensus 415 ~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~ 468 (700)
T KOG1156|consen 415 FKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLRANEIEEAEEVLSKFTRE 468 (700)
T ss_pred HHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHHccccHHHHHHHHHhhhc
Confidence 789999999999999998877778777666777888899999998888776543
No 68
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.86 E-value=0.00018 Score=73.36 Aligned_cols=457 Identities=11% Similarity=0.093 Sum_probs=225.0
Q ss_pred CCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHH
Q 042546 141 ESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRNKMTEKFEKEGLESDLEK 220 (671)
Q Consensus 141 ~~~~~~A~~~f~~m~~~~~~~~~~~~~n~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~~~ 220 (671)
++++..-++.|+......+++--...|...|.-...+|-++-++.++++-.+. ++..-.--|.-+++.++++++.+
T Consensus 115 Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie~L~~~d~~~eaa~ 190 (835)
T KOG2047|consen 115 QGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIEYLAKSDRLDEAAQ 190 (835)
T ss_pred cchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHHHHHhccchHHHHH
Confidence 68888899999988775555555567988898888899999999999988766 55567788888888988888775
Q ss_pred HHHHHHcCCCCChHHHHHHHHHHHHhcCCChhHHHHHHhhcccccChHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCC
Q 042546 221 LKGIFATGSIDNSIEKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHD 300 (671)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~ 300 (671)
-...+-..... ++... -.+.....++...+.+..-.+.+.-+.. +++.+. +.-+|
T Consensus 191 ~la~vln~d~f--~sk~g------kSn~qlw~elcdlis~~p~~~~slnvda--------------iiR~gi---~rftD 245 (835)
T KOG2047|consen 191 RLATVLNQDEF--VSKKG------KSNHQLWLELCDLISQNPDKVQSLNVDA--------------IIRGGI---RRFTD 245 (835)
T ss_pred HHHHhcCchhh--hhhcc------cchhhHHHHHHHHHHhCcchhcccCHHH--------------HHHhhc---ccCcH
Confidence 44322111000 00000 0000000111111111111111111122 222221 11344
Q ss_pred H--HHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCC----------------------hHHHH
Q 042546 301 E--SSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNM----------------------VKEAV 356 (671)
Q Consensus 301 ~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~----------------------~~~a~ 356 (671)
. ..|++|.+-|.+.|.++.|.++|++-... .....-|+.+.++|++-.. ++-..
T Consensus 246 q~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~ 323 (835)
T KOG2047|consen 246 QLGFLWCSLADYYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHM 323 (835)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHH
Confidence 3 57899999999999999999999887765 2245556666666654321 11222
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHH-HHhcCcccHH--------------HHHHHHHHHHHcCCCCC------HHHHHHHH
Q 042546 357 DLYEFAMACKNKPSVNCCTFLLRK-IVVSKQLDMR--------------LFSKVVRVFRENGNVLT------DAMLNSVL 415 (671)
Q Consensus 357 ~l~~~m~~~g~~p~~~~~~~ll~~-~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~------~~~~~~li 415 (671)
.-|+.+...+ ..+++. +.+.+....+ .....+.+..+ .+.|. ...|..+.
T Consensus 324 a~~e~lm~rr--------~~~lNsVlLRQn~~nV~eW~kRV~l~e~~~~~~i~tyteAv~-~vdP~ka~Gs~~~Lw~~fa 394 (835)
T KOG2047|consen 324 ARFESLMNRR--------PLLLNSVLLRQNPHNVEEWHKRVKLYEGNAAEQINTYTEAVK-TVDPKKAVGSPGTLWVEFA 394 (835)
T ss_pred HHHHHHHhcc--------chHHHHHHHhcCCccHHHHHhhhhhhcCChHHHHHHHHHHHH-ccCcccCCCChhhHHHHHH
Confidence 2222222111 011111 1111100000 11111111111 11111 12466666
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC----------------
Q 042546 416 KALISVGRMGECNKILKAMEEGGFIAS---SNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDV---------------- 476 (671)
Q Consensus 416 ~~~~~~g~~~~A~~~~~~m~~~g~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~---------------- 476 (671)
+.|-..|+++.|..+|++..+-.++-- ..+|..-..+=.++.+++.|+++.+.....--.|
T Consensus 395 klYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlh 474 (835)
T KOG2047|consen 395 KLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLH 474 (835)
T ss_pred HHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHH
Confidence 666777777777777776665332211 2334444444445566666666666554321111
Q ss_pred -CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHH
Q 042546 477 -GDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGT-SHAGYA-IDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTY 553 (671)
Q Consensus 477 -~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~-~p~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~ 553 (671)
+...|...++.--..|-++....+++++.+ ..+ .|.... |..+ +-.+.-++++.+++++-..-+..+--...|
T Consensus 475 rSlkiWs~y~DleEs~gtfestk~vYdriid-LriaTPqii~NyAmf---LEeh~yfeesFk~YErgI~LFk~p~v~diW 550 (835)
T KOG2047|consen 475 RSLKIWSMYADLEESLGTFESTKAVYDRIID-LRIATPQIIINYAMF---LEEHKYFEESFKAYERGISLFKWPNVYDIW 550 (835)
T ss_pred HhHHHHHHHHHHHHHhccHHHHHHHHHHHHH-HhcCCHHHHHHHHHH---HHhhHHHHHHHHHHHcCCccCCCccHHHHH
Confidence 112333344444444556666666666665 332 232221 1111 123445566666665544321111112345
Q ss_pred HHHHHHHHh---cCCHHHHHHHHHHHHhCCCCCCHHH-HHHHH----HhcCChHHHHHHHHHhhhCCCC--CHHHHHHHH
Q 042546 554 EELIKNLLV---QRGFKDALSLLCLMKDHGFPPFVDP-FIKYV----SKSGTSDDAIAFLKGMTSKRFP--SMSVVLCLF 623 (671)
Q Consensus 554 ~~li~~~~~---~g~~~~A~~l~~~m~~~~~~p~~~t-~~~~l----~~~g~~~~A~~~~~~m~~~~~p--~~~~~~~l~ 623 (671)
+..+.-+.+ ...++.|..+|++..+ |++|...- +--.| .+.|....|.+++++......+ -...|+..|
T Consensus 551 ~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myni~I 629 (835)
T KOG2047|consen 551 NTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIYI 629 (835)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 554444333 3356777777777776 56665432 22222 2456677777777776654432 234555555
Q ss_pred HHHHHcCCHHHHHHHHHhc
Q 042546 624 AAFFQARRHSEAQDLLSKC 642 (671)
Q Consensus 624 ~~~~~~g~~~~A~~~~~~m 642 (671)
.--...=-...-.+++++.
T Consensus 630 ~kaae~yGv~~TR~iYeka 648 (835)
T KOG2047|consen 630 KKAAEIYGVPRTREIYEKA 648 (835)
T ss_pred HHHHHHhCCcccHHHHHHH
Confidence 4333322233344455543
No 69
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.85 E-value=2.7e-05 Score=81.29 Aligned_cols=288 Identities=12% Similarity=0.088 Sum_probs=194.6
Q ss_pred HHHHccCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-hcC-
Q 042546 309 SVLGREDCIDRFWKVLDEMRSKGYEME-METCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIV-VSK- 385 (671)
Q Consensus 309 ~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~-~~~- 385 (671)
..+...|++++|++.++.-... -+| ..........+.+.|+.++|..+|..+.+. .|+...|-..+..+. -..
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~~--I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~r--NPdn~~Yy~~L~~~~g~~~~ 87 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEKQ--ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDR--NPDNYDYYRGLEEALGLQLQ 87 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhhh--CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHhhhcc
Confidence 4567889999999999775543 345 455566778889999999999999999976 566666554444443 222
Q ss_pred --cccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 042546 386 --QLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRM-GECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEA 462 (671)
Q Consensus 386 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A 462 (671)
..+.....++++++...- |.......+.-.+..-..+ ..+...+..+.+.|++ .+++.|-..|....+.+-.
T Consensus 88 ~~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~i 162 (517)
T PF12569_consen 88 LSDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAII 162 (517)
T ss_pred cccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHHHH
Confidence 223455666666665433 2211121221112221222 3455666777788864 3566677777766666666
Q ss_pred HHHHHHHHHC----C----------CCCCHHHH--HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCC-HHHHHHHHHHHH
Q 042546 463 NEFMDHMEAS----G----------SDVGDKMW--VSLIKGHCVAGDLDKAADCFQKMVEKEGTSHA-GYAIDLLVNTYC 525 (671)
Q Consensus 463 ~~~~~~m~~~----g----------~~~~~~~~--~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~-~~~~~~li~~~~ 525 (671)
.+++...... + -.|....| .-+-..|-..|+.++|++..++..+ ..|+ +..|..-...|-
T Consensus 163 ~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~---htPt~~ely~~KarilK 239 (517)
T PF12569_consen 163 ESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIE---HTPTLVELYMTKARILK 239 (517)
T ss_pred HHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHh---cCCCcHHHHHHHHHHHH
Confidence 6777665432 1 13444334 5567778899999999999999987 3454 667888888999
Q ss_pred hcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH-------H----HHHHHh
Q 042546 526 SKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDP-------F----IKYVSK 594 (671)
Q Consensus 526 ~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~t-------~----~~~l~~ 594 (671)
+.|++++|.+.++....- -.-|...=+-.+..+.++|++++|.+++....+.+..|.... | ..+|.+
T Consensus 240 h~G~~~~Aa~~~~~Ar~L--D~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r 317 (517)
T PF12569_consen 240 HAGDLKEAAEAMDEAREL--DLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLR 317 (517)
T ss_pred HCCCHHHHHHHHHHHHhC--ChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998752 123444555667778899999999999999987776544321 1 456678
Q ss_pred cCChHHHHHHHHHhhh
Q 042546 595 SGTSDDAIAFLKGMTS 610 (671)
Q Consensus 595 ~g~~~~A~~~~~~m~~ 610 (671)
.|++..|++.|..+.+
T Consensus 318 ~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 318 QGDYGLALKRFHAVLK 333 (517)
T ss_pred HhhHHHHHHHHHHHHH
Confidence 8999999888877765
No 70
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.84 E-value=0.0002 Score=72.50 Aligned_cols=160 Identities=11% Similarity=0.105 Sum_probs=100.4
Q ss_pred HHHHHHHHHHhc--CCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH--------HHHHhCCCCCC
Q 042546 480 MWVSLIKGHCVA--GDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVH--------NCVREYDLKPW 549 (671)
Q Consensus 480 ~~~~li~~~~~~--g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~--------~m~~~~~~~p~ 549 (671)
.+.+++..+.+. .....+.+++...-+ ..-.-...+--+++......|+++.|.+++. .+.+ .+..|.
T Consensus 341 ~~~~ll~~~t~~~~~~~~ka~e~L~~~~~-~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~-~~~~P~ 418 (652)
T KOG2376|consen 341 LFPILLQEATKVREKKHKKAIELLLQFAD-GHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILE-AKHLPG 418 (652)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHhc-cCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhh-hccChh
Confidence 344444443322 235556666666544 2211224455556666778899999999888 5543 244554
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCCHHHH---HH---HH-HhcCChHHHHHHHHHhhhCCCCCHHHHH
Q 042546 550 HTTYEELIKNLLVQRGFKDALSLLCLMKDH--GFPPFVDPF---IK---YV-SKSGTSDDAIAFLKGMTSKRFPSMSVVL 620 (671)
Q Consensus 550 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--~~~p~~~t~---~~---~l-~~~g~~~~A~~~~~~m~~~~~p~~~~~~ 620 (671)
.+ .+++..+.+.++.+.|..++.+.... .-.+....+ +. .+ -+.|+.++|...++++.+..++|..+..
T Consensus 419 ~V--~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d~~~l~ 496 (652)
T KOG2376|consen 419 TV--GAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPNDTDLLV 496 (652)
T ss_pred HH--HHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCchHHHHH
Confidence 44 55666677777766666666655421 001111222 11 11 3679999999999999998888999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHhchH
Q 042546 621 CLFAAFFQARRHSEAQDLLSKCPR 644 (671)
Q Consensus 621 ~l~~~~~~~g~~~~A~~~~~~m~~ 644 (671)
.++.+|++. +.+.|..+-+.++.
T Consensus 497 ~lV~a~~~~-d~eka~~l~k~L~p 519 (652)
T KOG2376|consen 497 QLVTAYARL-DPEKAESLSKKLPP 519 (652)
T ss_pred HHHHHHHhc-CHHHHHHHhhcCCC
Confidence 999999876 68888888887654
No 71
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.84 E-value=1.8e-06 Score=88.83 Aligned_cols=246 Identities=16% Similarity=0.159 Sum_probs=153.9
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHc-----CC-CCCHHH-HHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHH
Q 042546 302 SSYNAMASVLGREDCIDRFWKVLDEMRSK-----GY-EMEMET-CVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCC 374 (671)
Q Consensus 302 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g~-~p~~~t-~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~ 374 (671)
.+..-+...|...|+++.|..+++.-.+. |. .|...+ .+.+-..|...+++++|..+|+++...
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i--------- 270 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTI--------- 270 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH---------
Confidence 45555889999999999999999887654 21 233332 334667788999999999999998731
Q ss_pred HHHHHHHHhcCcccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CC-CCCH-HHHH
Q 042546 375 TFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEG-----GF-IASS-NMKS 447 (671)
Q Consensus 375 ~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g~-~~~~-~~~~ 447 (671)
....+ | ...+--..+++.|-.+|.+.|++++|...++...+- |. .|.+ .-++
T Consensus 271 --~e~~~---G----------------~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~ 329 (508)
T KOG1840|consen 271 --REEVF---G----------------EDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLS 329 (508)
T ss_pred --HHHhc---C----------------CCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHH
Confidence 11111 0 111111246777888899999999988888765431 11 1222 2355
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC---CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC----C-CCC-CH
Q 042546 448 KIAFRLSSAGKKDEANEFMDHMEAS---GSDVG----DKMWVSLIKGHCVAGDLDKAADCFQKMVEKE----G-TSH-AG 514 (671)
Q Consensus 448 ~li~~~~~~g~~~~A~~~~~~m~~~---g~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~----g-~~p-~~ 514 (671)
.+...|+..+++++|..+++...+. -+.++ ..+++.|-..|-+.|++++|.++|++..+.. | ..+ ..
T Consensus 330 ~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~ 409 (508)
T KOG1840|consen 330 ELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVG 409 (508)
T ss_pred HHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhh
Confidence 6677778888888888888765421 11222 2457777777777888888877777765411 1 111 13
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHh---CC-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 042546 515 YAIDLLVNTYCSKNRAIDACKFVHNCVRE---YD-LKPW-HTTYEELIKNLLVQRGFKDALSLLCLMK 577 (671)
Q Consensus 515 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~-~~p~-~~~~~~li~~~~~~g~~~~A~~l~~~m~ 577 (671)
..++-|-..|.+.++.++|.++|.+.... .| -.|+ ..+|..|...|.+.|++++|.++.+...
T Consensus 410 ~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 410 KPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 44566666777777777777777654321 11 1222 2366667777777777777777666553
No 72
>PF12854 PPR_1: PPR repeat
Probab=98.84 E-value=3.7e-09 Score=64.86 Aligned_cols=34 Identities=29% Similarity=0.285 Sum_probs=31.8
Q ss_pred CCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHH
Q 042546 158 ESERLSSKTYNLMLRIVGVHGLVQEFWGLVDVMK 191 (671)
Q Consensus 158 ~~~~~~~~~~n~li~~~~~~g~~~~a~~l~~~m~ 191 (671)
.|+.||++|||+||++|++.|++++|.++|++|+
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 3788999999999999999999999999999984
No 73
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.82 E-value=4.9e-07 Score=83.85 Aligned_cols=225 Identities=10% Similarity=-0.006 Sum_probs=186.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHh
Q 042546 412 NSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMW-VSLIKGHCV 490 (671)
Q Consensus 412 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~-~~li~~~~~ 490 (671)
+-+-++|.+.|.+.+|.+.|+.-.+. .|-+.||-.|-..|.+..+++.|+.++.+-.+. .|-.+|| ..+...+-.
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~ea 302 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIHEA 302 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHHHH
Confidence 66889999999999999999988766 577788999999999999999999999998876 5766765 456667778
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 042546 491 AGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDAL 570 (671)
Q Consensus 491 ~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 570 (671)
.++.++|.++++...+. -..++....++...|.-.++.+.|++.+.++..- |+ -+...|+.+--+|.-.+++|-++
T Consensus 303 m~~~~~a~~lYk~vlk~--~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqm-G~-~speLf~NigLCC~yaqQ~D~~L 378 (478)
T KOG1129|consen 303 MEQQEDALQLYKLVLKL--HPINVEAIACIAVGYFYDNNPEMALRYYRRILQM-GA-QSPELFCNIGLCCLYAQQIDLVL 378 (478)
T ss_pred HHhHHHHHHHHHHHHhc--CCccceeeeeeeeccccCCChHHHHHHHHHHHHh-cC-CChHHHhhHHHHHHhhcchhhhH
Confidence 89999999999999872 2346667777888889999999999999999874 54 35578888888888899999999
Q ss_pred HHHHHHHhCCCCCCHHH---H--HHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhchH
Q 042546 571 SLLCLMKDHGFPPFVDP---F--IKYVSKSGTSDDAIAFLKGMTSKRFPSMSVVLCLFAAFFQARRHSEAQDLLSKCPR 644 (671)
Q Consensus 571 ~l~~~m~~~~~~p~~~t---~--~~~l~~~g~~~~A~~~~~~m~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 644 (671)
--|++....--.|+... | .......|++..|.+.|+-....+....+.++.|.-.-.+.|+.++|..+++....
T Consensus 379 ~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s 457 (478)
T KOG1129|consen 379 PSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKS 457 (478)
T ss_pred HHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhh
Confidence 99998876555555432 2 12225789999999999999888878889999999999999999999999987553
No 74
>PF12854 PPR_1: PPR repeat
Probab=98.79 E-value=6.4e-09 Score=63.82 Aligned_cols=32 Identities=22% Similarity=0.369 Sum_probs=21.2
Q ss_pred CCCCCHHHHHHHHHHHHccCChHHHHHHHHHH
Q 042546 296 FVKHDESSYNAMASVLGREDCIDRFWKVLDEM 327 (671)
Q Consensus 296 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 327 (671)
|+.||.+|||+||.+||+.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 55666666666666666666666666666665
No 75
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.78 E-value=3.9e-06 Score=82.62 Aligned_cols=215 Identities=12% Similarity=-0.028 Sum_probs=147.2
Q ss_pred cCCHHHHHHHHHHHHHCC-CCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 042546 421 VGRMGECNKILKAMEEGG-FIAS--SNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKA 497 (671)
Q Consensus 421 ~g~~~~A~~~~~~m~~~g-~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a 497 (671)
.+..+.+..-+.++.... ..|+ ...|..+...|.+.|+.++|...|++..+.. +.+...|+.+...+...|++++|
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A 117 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAA 117 (296)
T ss_pred chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHH
Confidence 345667777777776432 2222 3457777778888999999999999888764 34567888899999999999999
Q ss_pred HHHHHHHHHcCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 042546 498 ADCFQKMVEKEGTSHA-GYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLM 576 (671)
Q Consensus 498 ~~~~~~m~~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m 576 (671)
.+.|+...+ +.|+ ..+|..+..++...|++++|.+.|+..... .|+..........+...++.++|.+.+++.
T Consensus 118 ~~~~~~Al~---l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~---~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~ 191 (296)
T PRK11189 118 YEAFDSVLE---LDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD---DPNDPYRALWLYLAESKLDPKQAKENLKQR 191 (296)
T ss_pred HHHHHHHHH---hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 999999876 3443 556777777888899999999999988763 444332222222234567899999999765
Q ss_pred HhCCCCCCHHHHHHHHHhcCChHHHHHHHHHhhhC-------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHhchH
Q 042546 577 KDHGFPPFVDPFIKYVSKSGTSDDAIAFLKGMTSK-------RFPSMSVVLCLFAAFFQARRHSEAQDLLSKCPR 644 (671)
Q Consensus 577 ~~~~~~p~~~t~~~~l~~~g~~~~A~~~~~~m~~~-------~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 644 (671)
... ..|+...+.......|+..++ ..++.+... .+.....|..+...+.+.|++++|...|++...
T Consensus 192 ~~~-~~~~~~~~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~ 264 (296)
T PRK11189 192 YEK-LDKEQWGWNIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALA 264 (296)
T ss_pred Hhh-CCccccHHHHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 533 233322222223345665544 345555432 112346899999999999999999999998654
No 76
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.77 E-value=8.7e-05 Score=70.05 Aligned_cols=443 Identities=9% Similarity=0.012 Sum_probs=235.6
Q ss_pred CChHHHHHHHHHHhhcCCC-CCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHH
Q 042546 142 SSPDEARRFFNWVLEKESE-RLSSKTYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRNKMTEKFEKEGLESDLEK 220 (671)
Q Consensus 142 ~~~~~A~~~f~~m~~~~~~-~~~~~~~n~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~~~ 220 (671)
.++.-|+.+++.-.....- .-++..| +-..+-+.|++++|+..+.-..+.. .|+...+..+-..+.-.|...+|..
T Consensus 36 rDytGAislLefk~~~~~EEE~~~~lW--ia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y~eA~~ 112 (557)
T KOG3785|consen 36 RDYTGAISLLEFKLNLDREEEDSLQLW--IAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQYIEAKS 112 (557)
T ss_pred ccchhHHHHHHHhhccchhhhHHHHHH--HHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHHHHHHH
Confidence 5677777776655431000 0123333 4456677888888888888877654 4555556555555555666666654
Q ss_pred HHHHHHcCCCCChHHHHHHHHHHHHhcCCChhHHHHHHhhcccccChHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCC
Q 042546 221 LKGIFATGSIDNSIEKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHD 300 (671)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~ 300 (671)
+-. ..+..+. ...++..........+.+...-...+-.....+-..-+..++-++.+|.+++.++..+ .|+
T Consensus 113 ~~~---ka~k~pL---~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d---n~e 183 (557)
T KOG3785|consen 113 IAE---KAPKTPL---CIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQD---NPE 183 (557)
T ss_pred HHh---hCCCChH---HHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhc---Chh
Confidence 322 1111111 1112222222222222221111111111111222222222235788999999998753 577
Q ss_pred HHHHHHHHH-HHHccCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 042546 301 ESSYNAMAS-VLGREDCIDRFWKVLDEMRSKGYEME-METCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLL 378 (671)
Q Consensus 301 ~~~~~~li~-~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll 378 (671)
....|.-+. .|.+..-++-+.+++.--.+. -|| ...-|.......+.=+-..|.+-...+...+-.. |. .+
T Consensus 184 y~alNVy~ALCyyKlDYydvsqevl~vYL~q--~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~----~~-f~ 256 (557)
T KOG3785|consen 184 YIALNVYMALCYYKLDYYDVSQEVLKVYLRQ--FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQE----YP-FI 256 (557)
T ss_pred hhhhHHHHHHHHHhcchhhhHHHHHHHHHHh--CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhccccc----ch-hH
Confidence 777776554 456777778888888776654 344 3333333322222212222222233332221111 00 11
Q ss_pred HHHHhcCccc---HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 042546 379 RKIVVSKQLD---MRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSS 455 (671)
Q Consensus 379 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~ 455 (671)
.-+++.+..- -+.+.+++..+.+ +.| ..--.|+--|.+.+++.+|..+.+++. +.++.-|-.-.-.++.
T Consensus 257 ~~l~rHNLVvFrngEgALqVLP~L~~--~IP--EARlNL~iYyL~q~dVqeA~~L~Kdl~----PttP~EyilKgvv~aa 328 (557)
T KOG3785|consen 257 EYLCRHNLVVFRNGEGALQVLPSLMK--HIP--EARLNLIIYYLNQNDVQEAISLCKDLD----PTTPYEYILKGVVFAA 328 (557)
T ss_pred HHHHHcCeEEEeCCccHHHhchHHHh--hCh--HhhhhheeeecccccHHHHHHHHhhcC----CCChHHHHHHHHHHHH
Confidence 1111111000 0111122211111 111 122345556889999999999988775 3333333211112222
Q ss_pred cC-------CHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhc
Q 042546 456 AG-------KKDEANEFMDHMEASGSDVGDKM-WVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSK 527 (671)
Q Consensus 456 ~g-------~~~~A~~~~~~m~~~g~~~~~~~-~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~ 527 (671)
.| ...-|.+.|+..-+++..-|.+. -.++.+.+.-..++|+++-.++.+.. .-..-|...+| +..+++..
T Consensus 329 lGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~s-YF~NdD~Fn~N-~AQAk~at 406 (557)
T KOG3785|consen 329 LGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIES-YFTNDDDFNLN-LAQAKLAT 406 (557)
T ss_pred hhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCcchhhhH-HHHHHHHh
Confidence 33 35677777777766665555433 44555666667788999988888877 55555555554 77889999
Q ss_pred CCHHHHHHHHHHHHHhCCCCCCHHHHHHHH-HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH----HHHHhcCChHHHH
Q 042546 528 NRAIDACKFVHNCVREYDLKPWHTTYEELI-KNLLVQRGFKDALSLLCLMKDHGFPPFVDPFI----KYVSKSGTSDDAI 602 (671)
Q Consensus 528 g~~~~A~~~~~~m~~~~~~~p~~~~~~~li-~~~~~~g~~~~A~~l~~~m~~~~~~p~~~t~~----~~l~~~g~~~~A~ 602 (671)
|.+.+|+++|-.+... .+ .|..+|.+++ ++|.+++..+-|.+++-.+. -..+..+++ .-|-+++.+--|-
T Consensus 407 gny~eaEelf~~is~~-~i-kn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~---t~~e~fsLLqlIAn~CYk~~eFyyaa 481 (557)
T KOG3785|consen 407 GNYVEAEELFIRISGP-EI-KNKILYKSMLARCYIRNKKPQLAWDMMLKTN---TPSERFSLLQLIANDCYKANEFYYAA 481 (557)
T ss_pred cChHHHHHHHhhhcCh-hh-hhhHHHHHHHHHHHHhcCCchHHHHHHHhcC---CchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999887531 22 4566776655 67889999999988766553 233334443 3345788888888
Q ss_pred HHHHHhhhCCCCCHHHH
Q 042546 603 AFLKGMTSKRFPSMSVV 619 (671)
Q Consensus 603 ~~~~~m~~~~~p~~~~~ 619 (671)
+.|+.+...+ |+++.|
T Consensus 482 KAFd~lE~lD-P~pEnW 497 (557)
T KOG3785|consen 482 KAFDELEILD-PTPENW 497 (557)
T ss_pred HhhhHHHccC-CCcccc
Confidence 8888777654 344333
No 77
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.75 E-value=0.00051 Score=71.85 Aligned_cols=357 Identities=10% Similarity=-0.002 Sum_probs=220.8
Q ss_pred CChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHH-HHHH-hCCChHHHH
Q 042546 279 DEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVL-GRFS-ERNMVKEAV 356 (671)
Q Consensus 279 ~~~~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li-~~~~-~~g~~~~a~ 356 (671)
|+++.+-+.|++.. .+.-.....|+.+-..|.-.|.-..|..++++-....-.|+..+--.++ ..|. +.+.+++++
T Consensus 337 g~f~~lae~fE~~~--~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmasklc~e~l~~~eegl 414 (799)
T KOG4162|consen 337 GQFEVLAEQFEQAL--PFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMASKLCIERLKLVEEGL 414 (799)
T ss_pred HHHHHHHHHHHHHh--HhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHHHHHHhchhhhhhHH
Confidence 89999999999876 3456677889999999999999999999998766553335433333333 3333 446777777
Q ss_pred HHHHHHHh--CCCCCCHHHHHHHHHHHHhc-----Ccc-c-----HHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHhcC
Q 042546 357 DLYEFAMA--CKNKPSVNCCTFLLRKIVVS-----KQL-D-----MRLFSKVVRVFRE-NGNVLTDAMLNSVLKALISVG 422 (671)
Q Consensus 357 ~l~~~m~~--~g~~p~~~~~~~ll~~~~~~-----~~~-~-----~~~~~~~~~~~~~-~~~~~~~~~~~~li~~~~~~g 422 (671)
+.-.+... .+..-....-..++.+.+.+ ... + .....+.+++..+ .+..|+...|-++ -|+..+
T Consensus 415 dYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~~if~lal--q~A~~R 492 (799)
T KOG4162|consen 415 DYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPLVIFYLAL--QYAEQR 492 (799)
T ss_pred HHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHH--HHHHHH
Confidence 77776665 22211111111122222211 111 1 1223333444433 3344544444333 467788
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCC------------------CCHHHHHH
Q 042546 423 RMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEAS-GSD------------------VGDKMWVS 483 (671)
Q Consensus 423 ~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~------------------~~~~~~~~ 483 (671)
+++.|.+...+..+.+-.-+...|..|.-.+...+++.+|+.+.+...+. |.. --..|...
T Consensus 493 ~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~ 572 (799)
T KOG4162|consen 493 QLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIH 572 (799)
T ss_pred hHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHH
Confidence 99999999999998765788899999999999999999999998876543 210 00122222
Q ss_pred HHHHHHhc------C-----------------CHHHHHHHHHHHHH-------cCC---------CC--CC------HHH
Q 042546 484 LIKGHCVA------G-----------------DLDKAADCFQKMVE-------KEG---------TS--HA------GYA 516 (671)
Q Consensus 484 li~~~~~~------g-----------------~~~~a~~~~~~m~~-------~~g---------~~--p~------~~~ 516 (671)
++..+-.. + +..++.+...++.. ..| .. |+ ...
T Consensus 573 ~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~l 652 (799)
T KOG4162|consen 573 KLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKL 652 (799)
T ss_pred HHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHH
Confidence 22222200 0 00111111100000 011 11 11 123
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH----HHHHHH
Q 042546 517 IDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVD----PFIKYV 592 (671)
Q Consensus 517 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~----t~~~~l 592 (671)
|....+.+.+.+..++|...+.+...- .......|...-..+...|..++|.+.|..... +.|+.+ .+..++
T Consensus 653 wllaa~~~~~~~~~~~a~~CL~Ea~~~--~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~--ldP~hv~s~~Ala~~l 728 (799)
T KOG4162|consen 653 WLLAADLFLLSGNDDEARSCLLEASKI--DPLSASVYYLRGLLLEVKGQLEEAKEAFLVALA--LDPDHVPSMTALAELL 728 (799)
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHHhc--chhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHh--cCCCCcHHHHHHHHHH
Confidence 445566777888888888777777542 222333455444566678899999998887764 466654 445566
Q ss_pred HhcCChHHHHH--HHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhch
Q 042546 593 SKSGTSDDAIA--FLKGMTSKRFPSMSVVLCLFAAFFQARRHSEAQDLLSKCP 643 (671)
Q Consensus 593 ~~~g~~~~A~~--~~~~m~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 643 (671)
.+.|+-.-|.. ++..+.+.++.+...|-.+...+.+.|+.++|.+.|....
T Consensus 729 le~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~ 781 (799)
T KOG4162|consen 729 LELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAAL 781 (799)
T ss_pred HHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHH
Confidence 67787766666 9999999999999999999999999999999999988643
No 78
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.71 E-value=2.8e-06 Score=79.00 Aligned_cols=229 Identities=12% Similarity=-0.008 Sum_probs=144.5
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 042546 305 NAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVS 384 (671)
Q Consensus 305 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~ 384 (671)
+-|-..|.+.|.+.+|.+.|..-.+. .|-+.||-.|-..|.+..+++.|+.+|.+-.+. .|-.+||
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~---------- 292 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTY---------- 292 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhh----------
Confidence 34566777777777777777766655 456667777777777777777777777765532 3333332
Q ss_pred CcccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 042546 385 KQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANE 464 (671)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 464 (671)
..-+...+-..++.++|.++++...+.. +.++.....+..+|.-.+++|-|+.
T Consensus 293 --------------------------l~g~ARi~eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~Alr 345 (478)
T KOG1129|consen 293 --------------------------LLGQARIHEAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALR 345 (478)
T ss_pred --------------------------hhhhHHHHHHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHH
Confidence 2223334445567777777777777654 4455666666777777778888888
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 042546 465 FMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAG--YAIDLLVNTYCSKNRAIDACKFVHNCVR 542 (671)
Q Consensus 465 ~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~ 542 (671)
+++++.+-|+ -+...|+.+--+|.-.+++|-++.-|.+... .--.|+. .+|-.|-......|++..|.+.|.-...
T Consensus 346 yYRRiLqmG~-~speLf~NigLCC~yaqQ~D~~L~sf~RAls-tat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~ 423 (478)
T KOG1129|consen 346 YYRRILQMGA-QSPELFCNIGLCCLYAQQIDLVLPSFQRALS-TATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALT 423 (478)
T ss_pred HHHHHHHhcC-CChHHHhhHHHHHHhhcchhhhHHHHHHHHh-hccCcchhhhhhhccceeEEeccchHHHHHHHHHHhc
Confidence 8888777775 3566677777777777777777777776655 3332332 2344444444556777777777766553
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 042546 543 EYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKD 578 (671)
Q Consensus 543 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 578 (671)
.-.-+...+|.|.-.-.+.|++++|..++.....
T Consensus 424 --~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s 457 (478)
T KOG1129|consen 424 --SDAQHGEALNNLAVLAARSGDILGARSLLNAAKS 457 (478)
T ss_pred --cCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhh
Confidence 1223445666665555667777777777666553
No 79
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.69 E-value=9.6e-05 Score=75.55 Aligned_cols=304 Identities=12% Similarity=-0.052 Sum_probs=156.4
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHHcCC-CCCHHHH-HHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHH-HHHHH
Q 042546 301 ESSYNAMASVLGREDCIDRFWKVLDEMRSKGY-EMEMETC-VKVLGRFSERNMVKEAVDLYEFAMACKNKPSVN-CCTFL 377 (671)
Q Consensus 301 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t~-~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~-~~~~l 377 (671)
...|..+...+...|+.+++.+.+....+..- .++.... ......+...|++++|.+++++..+. .|+.. .+..
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~--~P~~~~a~~~- 82 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDD--YPRDLLALKL- 82 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHH-
Confidence 45667777777778888887777766554321 2232222 22233456788999999999988754 33322 1111
Q ss_pred HHHHHhcCcccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhc
Q 042546 378 LRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIAS-SNMKSKIAFRLSSA 456 (671)
Q Consensus 378 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~-~~~~~~li~~~~~~ 456 (671)
...+...+ ...+..+.+.+.+.. . ....|+ ......+...+...
T Consensus 83 ~~~~~~~~---------------------------------~~~~~~~~~~~~l~~-~-~~~~~~~~~~~~~~a~~~~~~ 127 (355)
T cd05804 83 HLGAFGLG---------------------------------DFSGMRDHVARVLPL-W-APENPDYWYLLGMLAFGLEEA 127 (355)
T ss_pred hHHHHHhc---------------------------------ccccCchhHHHHHhc-c-CcCCCCcHHHHHHHHHHHHHc
Confidence 00111111 112333344444433 1 111222 23334445566667
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCH--HHHHHHHHHHHhcCCHHHHH
Q 042546 457 GKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAG--YAIDLLVNTYCSKNRAIDAC 534 (671)
Q Consensus 457 g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~--~~~~~li~~~~~~g~~~~A~ 534 (671)
|++++|.+.+++..+.. +.+...+..+...+...|++++|...+++..+.....|+. ..|..+...+...|+.++|.
T Consensus 128 G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~ 206 (355)
T cd05804 128 GQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAAL 206 (355)
T ss_pred CCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHH
Confidence 77777777777776653 2334556666666777777777777777665511112222 23445666677777777777
Q ss_pred HHHHHHHHhCCCCCCHHHH-H--HHHHHHHhcCCHHHHHHH--HHHHHhCCCCCC----H--HHHHHHHHhcCChHHHHH
Q 042546 535 KFVHNCVREYDLKPWHTTY-E--ELIKNLLVQRGFKDALSL--LCLMKDHGFPPF----V--DPFIKYVSKSGTSDDAIA 603 (671)
Q Consensus 535 ~~~~~m~~~~~~~p~~~~~-~--~li~~~~~~g~~~~A~~l--~~~m~~~~~~p~----~--~t~~~~l~~~g~~~~A~~ 603 (671)
.++++........+..... + .++.-+...|..+.+.++ ......... |. . .....++...|+.++|..
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~-~~~~~~~~~~~~a~~~~~~~~~~~a~~ 285 (355)
T cd05804 207 AIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHF-PDHGLAFNDLHAALALAGAGDKDALDK 285 (355)
T ss_pred HHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhc-CcccchHHHHHHHHHHhcCCCHHHHHH
Confidence 7777764321111111111 1 222222233332222222 111110000 11 0 123445567788888888
Q ss_pred HHHHhhhCCCC---------CHHHHHHHHHHHHHcCCHHHHHHHHHhchH
Q 042546 604 FLKGMTSKRFP---------SMSVVLCLFAAFFQARRHSEAQDLLSKCPR 644 (671)
Q Consensus 604 ~~~~m~~~~~p---------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 644 (671)
.++.+...... .........-++.+.|++++|.+.+.....
T Consensus 286 ~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~ 335 (355)
T cd05804 286 LLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRD 335 (355)
T ss_pred HHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 88777652111 223333444566789999999999988654
No 80
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.67 E-value=2.5e-05 Score=76.89 Aligned_cols=202 Identities=13% Similarity=0.040 Sum_probs=141.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 042546 409 AMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGH 488 (671)
Q Consensus 409 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~ 488 (671)
..|..+-..|...|+.++|...|++..+.. +.+...|+.+...|...|++++|.+.|++..+.. +-+..+|..+...+
T Consensus 65 ~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l 142 (296)
T PRK11189 65 QLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAYLNRGIAL 142 (296)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 346677778899999999999999998865 4567899999999999999999999999998763 22467788888889
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 042546 489 CVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKD 568 (671)
Q Consensus 489 ~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~ 568 (671)
...|++++|.+.|+...+ ..|+..........+...++.++|...|.+.... ..|+...| .+. ....|+..+
T Consensus 143 ~~~g~~~eA~~~~~~al~---~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~--~~~~~~~~-~~~--~~~lg~~~~ 214 (296)
T PRK11189 143 YYGGRYELAQDDLLAFYQ---DDPNDPYRALWLYLAESKLDPKQAKENLKQRYEK--LDKEQWGW-NIV--EFYLGKISE 214 (296)
T ss_pred HHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh--CCccccHH-HHH--HHHccCCCH
Confidence 999999999999999877 3344322222222344568899999999776542 33433222 222 233555554
Q ss_pred HHHHHHHHHhCC---C--CCCH-HH---HHHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHH
Q 042546 569 ALSLLCLMKDHG---F--PPFV-DP---FIKYVSKSGTSDDAIAFLKGMTSKRFPSMSVVLC 621 (671)
Q Consensus 569 A~~l~~~m~~~~---~--~p~~-~t---~~~~l~~~g~~~~A~~~~~~m~~~~~p~~~~~~~ 621 (671)
+ +.++.+.+.- . .|+. .. +...+.+.|++++|...|++.....+||..-+..
T Consensus 215 ~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~e~~~ 275 (296)
T PRK11189 215 E-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFVEHRY 275 (296)
T ss_pred H-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHHHHHH
Confidence 4 3455544221 1 1111 11 2455678999999999999999988777665544
No 81
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.60 E-value=0.00041 Score=70.86 Aligned_cols=294 Identities=12% Similarity=0.001 Sum_probs=173.5
Q ss_pred CCChHHHHHHHHHHHHcCCCCCCH-HHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHH
Q 042546 278 GDEPKKALIFFRWAEESGFVKHDE-SSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAV 356 (671)
Q Consensus 278 ~~~~~~A~~~f~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~ 356 (671)
.++.+++.+.+...........+. .........+...|++++|.+++++..+.. +.|...+.. ...+...|+...+.
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~-~~~~~~~~~~~~~~ 96 (355)
T cd05804 19 GGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKL-HLGAFGLGDFSGMR 96 (355)
T ss_pred cCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH-hHHHHHhcccccCc
Confidence 477888777777665433222232 222223445678899999999999988762 224444443 22333333332222
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 042546 357 DLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLT-DAMLNSVLKALISVGRMGECNKILKAME 435 (671)
Q Consensus 357 ~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~ 435 (671)
....+.... . ....|+ ......+...+...|++++|...+++..
T Consensus 97 ~~~~~~l~~-~----------------------------------~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al 141 (355)
T cd05804 97 DHVARVLPL-W----------------------------------APENPDYWYLLGMLAFGLEEAGQYDRAEEAARRAL 141 (355)
T ss_pred hhHHHHHhc-c----------------------------------CcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 222222211 0 111122 2234455567788999999999999998
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-C
Q 042546 436 EGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGS-DVGD--KMWVSLIKGHCVAGDLDKAADCFQKMVEKEGT-S 511 (671)
Q Consensus 436 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~~~~--~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~-~ 511 (671)
+.. +.+...+..+...|...|++++|...+++...... .|+. ..|..+...+...|+.++|..++++... ... .
T Consensus 142 ~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~-~~~~~ 219 (355)
T cd05804 142 ELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIA-PSAES 219 (355)
T ss_pred hhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhc-cccCC
Confidence 875 45667888889999999999999999998876532 2332 3455778889999999999999999865 222 2
Q ss_pred CCHHHH-H--HHHHHHHhcCCHHHHHHH--HHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--
Q 042546 512 HAGYAI-D--LLVNTYCSKNRAIDACKF--VHNCVREYD-LKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPP-- 583 (671)
Q Consensus 512 p~~~~~-~--~li~~~~~~g~~~~A~~~--~~~m~~~~~-~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p-- 583 (671)
+..... + .++.-+...|..+.+.+. ......... .............++...|+.++|.++++.+......+
T Consensus 220 ~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 299 (355)
T cd05804 220 DPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADD 299 (355)
T ss_pred ChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCc
Confidence 222211 1 333334445544443333 222211100 01111222245666778999999999999887533221
Q ss_pred C-----HH--HHHH--HHHhcCChHHHHHHHHHhhh
Q 042546 584 F-----VD--PFIK--YVSKSGTSDDAIAFLKGMTS 610 (671)
Q Consensus 584 ~-----~~--t~~~--~l~~~g~~~~A~~~~~~m~~ 610 (671)
. .. .++. .+...|+.++|.+.+.....
T Consensus 300 ~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~ 335 (355)
T cd05804 300 NKQPARDVGLPLAEALYAFAEGNYATALELLGPVRD 335 (355)
T ss_pred hhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1 11 1122 23588999999999887664
No 82
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.60 E-value=0.00039 Score=70.11 Aligned_cols=265 Identities=11% Similarity=0.035 Sum_probs=190.4
Q ss_pred CCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHH
Q 042546 278 GDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVD 357 (671)
Q Consensus 278 ~~~~~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~ 357 (671)
+.++.+..++++.+.+.. +++...+..=|..+...|+..+-..+=.+|.+. .+-...+|-++---|.-.|+..+|++
T Consensus 257 ~c~f~~c~kit~~lle~d--pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~YYl~i~k~seARr 333 (611)
T KOG1173|consen 257 GCRFKECLKITEELLEKD--PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGCYYLMIGKYSEARR 333 (611)
T ss_pred cChHHHHHHHhHHHHhhC--CCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHHHHHHhcCcHHHHH
Confidence 478999999999987644 556666777788999999988888888888876 23358899999998988999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 042546 358 LYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEG 437 (671)
Q Consensus 358 l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 437 (671)
.|.+.... .|.- ...|-..-..|+-.|.-|+|...+...-+.
T Consensus 334 y~SKat~l--D~~f------------------------------------gpaWl~fghsfa~e~EhdQAmaaY~tAarl 375 (611)
T KOG1173|consen 334 YFSKATTL--DPTF------------------------------------GPAWLAFGHSFAGEGEHDQAMAAYFTAARL 375 (611)
T ss_pred HHHHHhhc--Cccc------------------------------------cHHHHHHhHHhhhcchHHHHHHHHHHHHHh
Confidence 99886521 1110 023666777778888888888777665542
Q ss_pred --C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCC--
Q 042546 438 --G-FIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEK-EGTS-- 511 (671)
Q Consensus 438 --g-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~g~~-- 511 (671)
| ..|. .| +---|.+.++.+.|.+.|.+..... +.|+...+-+--..-+.+.+.+|..+|+..... ..+.
T Consensus 376 ~~G~hlP~--LY--lgmey~~t~n~kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e 450 (611)
T KOG1173|consen 376 MPGCHLPS--LY--LGMEYMRTNNLKLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNE 450 (611)
T ss_pred ccCCcchH--HH--HHHHHHHhccHHHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhcccc
Confidence 2 1222 22 2234667888899999988877543 446677777776677788888888888877630 0111
Q ss_pred --CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 042546 512 --HAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPFI 589 (671)
Q Consensus 512 --p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~t~~ 589 (671)
--..+++.|-.+|.+++..++|...|+..... .+-+..+|.++--.|...|+++.|.+.|.+.. .+.|+..+..
T Consensus 451 ~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l--~~k~~~~~asig~iy~llgnld~Aid~fhKaL--~l~p~n~~~~ 526 (611)
T KOG1173|consen 451 KIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLL--SPKDASTHASIGYIYHLLGNLDKAIDHFHKAL--ALKPDNIFIS 526 (611)
T ss_pred ccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHc--CCCchhHHHHHHHHHHHhcChHHHHHHHHHHH--hcCCccHHHH
Confidence 12345677778888999999999999888763 44567788888878888999999999988876 4678875554
Q ss_pred HHH
Q 042546 590 KYV 592 (671)
Q Consensus 590 ~~l 592 (671)
..+
T Consensus 527 ~lL 529 (611)
T KOG1173|consen 527 ELL 529 (611)
T ss_pred HHH
Confidence 444
No 83
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.59 E-value=0.0016 Score=68.37 Aligned_cols=362 Identities=13% Similarity=0.062 Sum_probs=229.4
Q ss_pred CCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHH
Q 042546 297 VKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTF 376 (671)
Q Consensus 297 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ 376 (671)
+..|...|..+--+..++|+++.+-+.|++....- --....|+.+-..|...|.-..|..+++.-....-.|+..+--.
T Consensus 319 ~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~-~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~L 397 (799)
T KOG4162|consen 319 FQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFS-FGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLL 397 (799)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh-hhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHH
Confidence 35788999999999999999999999999987542 23567899999999999999999999998765443455444434
Q ss_pred HHHHHHhcCccc----HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-----------CHHHHHHHHHHHHHCC-CC
Q 042546 377 LLRKIVVSKQLD----MRLFSKVVRVFRENGNVLTDAMLNSVLKALISVG-----------RMGECNKILKAMEEGG-FI 440 (671)
Q Consensus 377 ll~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-----------~~~~A~~~~~~m~~~g-~~ 440 (671)
+....|-..-.. .+-+.+++.......-......|-.+--+|...- ...++.+.+++..+.+ -.
T Consensus 398 masklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~d 477 (799)
T KOG4162|consen 398 MASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTD 477 (799)
T ss_pred HHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 443333222111 2344455543322222233344555555554321 2356777777777654 33
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--------
Q 042546 441 ASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSH-------- 512 (671)
Q Consensus 441 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p-------- 512 (671)
|+...|-++ -|+-.++++.|.+...+..+-+-.-+...|.-+.-.+.-.+++.+|+.+.+...+..|..-
T Consensus 478 p~~if~lal--q~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~ 555 (799)
T KOG4162|consen 478 PLVIFYLAL--QYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIH 555 (799)
T ss_pred chHHHHHHH--HHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhh
Confidence 444444443 4667889999999999999886678899999999999999999999999988766344310
Q ss_pred ----------CHHHHHHHHHHHHh---------cC--------------CHHHHHHHHHHHH----H------------h
Q 042546 513 ----------AGYAIDLLVNTYCS---------KN--------------RAIDACKFVHNCV----R------------E 543 (671)
Q Consensus 513 ----------~~~~~~~li~~~~~---------~g--------------~~~~A~~~~~~m~----~------------~ 543 (671)
-..|...++..+-. .| +..+|.+....+. . +
T Consensus 556 i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~ 635 (799)
T KOG4162|consen 556 IELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPS 635 (799)
T ss_pred hhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCc
Confidence 01122222222110 00 1111111111000 0 0
Q ss_pred CCCC--CC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH--HHHHHH--HHhcCChHHHHHHHHHhhhC
Q 042546 544 YDLK--PW------HTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFV--DPFIKY--VSKSGTSDDAIAFLKGMTSK 611 (671)
Q Consensus 544 ~~~~--p~------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~--~t~~~~--l~~~g~~~~A~~~~~~m~~~ 611 (671)
.... |+ ...|......+.+.++.++|...+.+... +.|-. ..+..+ +-..|..++|.+.|......
T Consensus 636 s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~--~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~l 713 (799)
T KOG4162|consen 636 STVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK--IDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALAL 713 (799)
T ss_pred ccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh--cchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhc
Confidence 0011 11 11444555566667777777766666653 33332 223333 34678899999999988888
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHH--HHHhchHhhhccHHHHHHHHhh-hcCC
Q 042546 612 RFPSMSVVLCLFAAFFQARRHSEAQD--LLSKCPRYVRNHADVLNLLYSK-KSGG 663 (671)
Q Consensus 612 ~~p~~~~~~~l~~~~~~~g~~~~A~~--~~~~m~~~~~~~~~~~~l~~~m-~~~g 663 (671)
+|.++..-.++..++.+.|+..-|.. ++..+.+.....+++|..+.++ +..|
T Consensus 714 dP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~G 768 (799)
T KOG4162|consen 714 DPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLG 768 (799)
T ss_pred CCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcc
Confidence 77788888999999999998887777 8888888777788887766665 3444
No 84
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.58 E-value=0.0017 Score=68.31 Aligned_cols=372 Identities=15% Similarity=0.102 Sum_probs=192.4
Q ss_pred CCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHc-CC--------CCCHHHHHHHHHHHHH
Q 042546 141 ESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLVDVMKKK-GY--------GVASHVRNKMTEKFEK 211 (671)
Q Consensus 141 ~~~~~~A~~~f~~m~~~~~~~~~~~~~n~li~~~~~~g~~~~a~~l~~~m~~~-g~--------~p~~~t~~~ll~~~~~ 211 (671)
.|+++.|.+-.+.++ +-..|..|-+.|.+..+.+-|.-.+-.|... |. .|+ .+=..+--.-..
T Consensus 741 iG~MD~AfksI~~Ik-------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvLAie 812 (1416)
T KOG3617|consen 741 IGSMDAAFKSIQFIK-------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVLAIE 812 (1416)
T ss_pred eccHHHHHHHHHHHh-------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHHHHH
Confidence 599999998888774 4468999999999999999998888888543 21 111 111112222234
Q ss_pred cCChhHHHHHHHHHHcCCCCChHHHHHHHHHHHHhcCCChhHHHHHHhhcccccChHHHHHHHHHhCCChHHHHHHHHHH
Q 042546 212 EGLESDLEKLKGIFATGSIDNSIEKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWA 291 (671)
Q Consensus 212 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~f~~~ 291 (671)
.|..++|..+.+--++. ++++.+... .|.+++|.++-+.-
T Consensus 813 LgMlEeA~~lYr~ckR~---------------------------------------DLlNKlyQs-~g~w~eA~eiAE~~ 852 (1416)
T KOG3617|consen 813 LGMLEEALILYRQCKRY---------------------------------------DLLNKLYQS-QGMWSEAFEIAETK 852 (1416)
T ss_pred HhhHHHHHHHHHHHHHH---------------------------------------HHHHHHHHh-cccHHHHHHHHhhc
Confidence 55555555443322211 122222211 14555555444321
Q ss_pred HHcCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcC-------------------CCCCHHHHHHHHHHHHhCCCh
Q 042546 292 EESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKG-------------------YEMEMETCVKVLGRFSERNMV 352 (671)
Q Consensus 292 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-------------------~~p~~~t~~~li~~~~~~g~~ 352 (671)
.+ -.=..||..-..-+-..++.+.|++.|++-.... -..|...|.---...-..|+.
T Consensus 853 DR----iHLr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~Gem 928 (1416)
T KOG3617|consen 853 DR----IHLRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEM 928 (1416)
T ss_pred cc----eehhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccch
Confidence 10 0111233333333344445555555444321100 001223333333333344555
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 042546 353 KEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILK 432 (671)
Q Consensus 353 ~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 432 (671)
+.|+.+|...+. |-+++...|-.|+.++|-++-+
T Consensus 929 daAl~~Y~~A~D----------------------------------------------~fs~VrI~C~qGk~~kAa~iA~ 962 (1416)
T KOG3617|consen 929 DAALSFYSSAKD----------------------------------------------YFSMVRIKCIQGKTDKAARIAE 962 (1416)
T ss_pred HHHHHHHHHhhh----------------------------------------------hhhheeeEeeccCchHHHHHHH
Confidence 555555555432 6667777777888888887766
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh---------------cCCHHHH
Q 042546 433 AMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCV---------------AGDLDKA 497 (671)
Q Consensus 433 ~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~---------------~g~~~~a 497 (671)
+ .-|....-.|...|-..|++.+|...|-+.+. |...|+.|-. ..+.-.|
T Consensus 963 e------sgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqa---------fsnAIRlcKEnd~~d~L~nlal~s~~~d~v~a 1027 (1416)
T KOG3617|consen 963 E------SGDKAACYHLARMYENDGDVVKAVKFFTRAQA---------FSNAIRLCKENDMKDRLANLALMSGGSDLVSA 1027 (1416)
T ss_pred h------cccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH---------HHHHHHHHHhcCHHHHHHHHHhhcCchhHHHH
Confidence 5 34666666788888888888888888876542 2223332222 2223333
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH---------HHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 042546 498 ADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVH---------NCVREYDLKPWHTTYEELIKNLLVQRGFKD 568 (671)
Q Consensus 498 ~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~---------~m~~~~~~~p~~~~~~~li~~~~~~g~~~~ 568 (671)
-..|++. |.. +.--+..|-+.|.+.+|+++-- -+.+...-..|....+.-.+-++.+.++++
T Consensus 1028 ArYyEe~----g~~-----~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyek 1098 (1416)
T KOG3617|consen 1028 ARYYEEL----GGY-----AHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEK 1098 (1416)
T ss_pred HHHHHHc----chh-----hhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHH
Confidence 4444432 211 2223445777777777766532 122221223345555555555666777788
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHhcCChHHHHHHHHHhhh-C-CCCCH----HHHHHHHHHHHHcCCHHHHHHHHHh
Q 042546 569 ALSLLCLMKDHGFPPFVDPFIKYVSKSGTSDDAIAFLKGMTS-K-RFPSM----SVVLCLFAAFFQARRHSEAQDLLSK 641 (671)
Q Consensus 569 A~~l~~~m~~~~~~p~~~t~~~~l~~~g~~~~A~~~~~~m~~-~-~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~ 641 (671)
|..++-..++. .-.-.+|+..++.--.++-+.|.. + +.|+. .....+.+.|.++|.+..|-+=|-+
T Consensus 1099 AV~lL~~ar~~-------~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQ 1170 (1416)
T KOG3617|consen 1099 AVNLLCLAREF-------SGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQ 1170 (1416)
T ss_pred HHHHHHHHHHH-------HHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhh
Confidence 77776655431 011223444444444444444443 2 22332 3355566677777777766665554
No 85
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.57 E-value=7e-05 Score=66.81 Aligned_cols=197 Identities=11% Similarity=0.069 Sum_probs=142.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 042546 411 LNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCV 490 (671)
Q Consensus 411 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~ 490 (671)
..-|--.|...|+...|.+-+++..+.. +.+..+|..+...|-+.|..+.|.+-|++..... +-+-...|..-.-+|.
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC~ 115 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLCA 115 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHHh
Confidence 4556678889999999999999888776 4566788888999999999999999999887763 2344556777777788
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 042546 491 AGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDAL 570 (671)
Q Consensus 491 ~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 570 (671)
.|++++|.+.|++........--..+|..+.-+-.+.|+.+.|.+.|.+-.+.. .-...+.-.+.......|++-.|.
T Consensus 116 qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d--p~~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 116 QGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD--PQFPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred CCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC--cCCChHHHHHHHHHHhcccchHHH
Confidence 889999999998887722222234466666667778889999998888877631 122345566777777888888888
Q ss_pred HHHHHHHhCCCCCCHHHHH---HHHHhcCChHHHHHHHHHhhhCC
Q 042546 571 SLLCLMKDHGFPPFVDPFI---KYVSKSGTSDDAIAFLKGMTSKR 612 (671)
Q Consensus 571 ~l~~~m~~~~~~p~~~t~~---~~l~~~g~~~~A~~~~~~m~~~~ 612 (671)
..++.....+. ++..++. ..=...|+.+.+-++=..+.+..
T Consensus 194 ~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~f 237 (250)
T COG3063 194 LYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLF 237 (250)
T ss_pred HHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 88888776655 6666663 22346777777776655555543
No 86
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.57 E-value=1.8e-05 Score=87.18 Aligned_cols=199 Identities=13% Similarity=0.100 Sum_probs=156.7
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHH
Q 042546 440 IASSNMKSKIAFRLSSAGKKDEANEFMDHMEAS-GS---DVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGY 515 (671)
Q Consensus 440 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~ 515 (671)
+-+...|-..|.-..+.++.++|.+++++.... ++ .--...|.++++.-..-|.-+...++|++..+ . + -...
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcq-y-c-d~~~ 1531 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQ-Y-C-DAYT 1531 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHH-h-c-chHH
Confidence 344567888888888899999999999888642 11 11134677888777777888888999999876 2 2 2344
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHH-
Q 042546 516 AIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPF--VDPFIKYV- 592 (671)
Q Consensus 516 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~--~~t~~~~l- 592 (671)
.|..|...|.+.+..++|.++++.|.++++ -....|...++.+.++.+-+.|.+++.+..+. -|- ..-+++-+
T Consensus 1532 V~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~--lPk~eHv~~IskfA 1607 (1710)
T KOG1070|consen 1532 VHLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKS--LPKQEHVEFISKFA 1607 (1710)
T ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhh--cchhhhHHHHHHHH
Confidence 688899999999999999999999998766 45678899999999999989999999988764 444 34444444
Q ss_pred ---HhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhchHh
Q 042546 593 ---SKSGTSDDAIAFLKGMTSKRFPSMSVVLCLFAAFFQARRHSEAQDLLSKCPRY 645 (671)
Q Consensus 593 ---~~~g~~~~A~~~~~~m~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 645 (671)
.++|+.+.+..+|+......|.....|+..++.=.++|+.+.+..+|++....
T Consensus 1608 qLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l 1663 (1710)
T KOG1070|consen 1608 QLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIEL 1663 (1710)
T ss_pred HHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhc
Confidence 58899999999999998888778889999999999999999999999986653
No 87
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.56 E-value=0.00032 Score=72.42 Aligned_cols=256 Identities=14% Similarity=0.130 Sum_probs=128.7
Q ss_pred CChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHH
Q 042546 279 DEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDL 358 (671)
Q Consensus 279 ~~~~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l 358 (671)
..+.+|+.+.+.++.+ ..-.--|..+.+-|+..|+++.|.++|.+-- .++-.|..|.+.|+|+.|.++
T Consensus 746 kew~kai~ildniqdq---k~~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~da~kl 813 (1636)
T KOG3616|consen 746 KEWKKAISILDNIQDQ---KTASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWEDAFKL 813 (1636)
T ss_pred hhhhhhHhHHHHhhhh---ccccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHHHHHHH
Confidence 5666777777766642 2223346666677777777777777776532 345667777777777777777
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 042546 359 YEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGG 438 (671)
Q Consensus 359 ~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 438 (671)
-.+... ..... ..|-+-..-+-+.|++.+|.+++-.+.
T Consensus 814 a~e~~~--~e~t~-------------------------------------~~yiakaedldehgkf~eaeqlyiti~--- 851 (1636)
T KOG3616|consen 814 AEECHG--PEATI-------------------------------------SLYIAKAEDLDEHGKFAEAEQLYITIG--- 851 (1636)
T ss_pred HHHhcC--chhHH-------------------------------------HHHHHhHHhHHhhcchhhhhheeEEcc---
Confidence 665431 11111 222222233344555556655554443
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHH
Q 042546 439 FIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAID 518 (671)
Q Consensus 439 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~ 518 (671)
.|+. .|.+|-+.|..++.+++.++-.-. .-..|-.-+..-|-..|++..|..-|-+..+ |.
T Consensus 852 -~p~~-----aiqmydk~~~~ddmirlv~k~h~d---~l~dt~~~f~~e~e~~g~lkaae~~flea~d----------~k 912 (1636)
T KOG3616|consen 852 -EPDK-----AIQMYDKHGLDDDMIRLVEKHHGD---HLHDTHKHFAKELEAEGDLKAAEEHFLEAGD----------FK 912 (1636)
T ss_pred -CchH-----HHHHHHhhCcchHHHHHHHHhChh---hhhHHHHHHHHHHHhccChhHHHHHHHhhhh----------HH
Confidence 3432 355566666666655555443211 0112233344444555565555555544332 44
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCCCCCC---HH-------------------HHHHHHHHHHhcCCHHHHHHHHHHH
Q 042546 519 LLVNTYCSKNRAIDACKFVHNCVREYDLKPW---HT-------------------TYEELIKNLLVQRGFKDALSLLCLM 576 (671)
Q Consensus 519 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~---~~-------------------~~~~li~~~~~~g~~~~A~~l~~~m 576 (671)
+-+++|-..+.+++|.++-..- .|-... .. ....-|+--+..+-++-|.++-+-.
T Consensus 913 aavnmyk~s~lw~dayriakte---gg~n~~k~v~flwaksiggdaavkllnk~gll~~~id~a~d~~afd~afdlari~ 989 (1636)
T KOG3616|consen 913 AAVNMYKASELWEDAYRIAKTE---GGANAEKHVAFLWAKSIGGDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIA 989 (1636)
T ss_pred HHHHHhhhhhhHHHHHHHHhcc---ccccHHHHHHHHHHHhhCcHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHh
Confidence 4555555555555555443321 010000 00 1111222233445555555555444
Q ss_pred HhCCCCCCHHHHHHHHHhcCChHHHHHHHHHhhh
Q 042546 577 KDHGFPPFVDPFIKYVSKSGTSDDAIAFLKGMTS 610 (671)
Q Consensus 577 ~~~~~~p~~~t~~~~l~~~g~~~~A~~~~~~m~~ 610 (671)
.+.....-..-+...+...|++++|-+-+-+.++
T Consensus 990 ~k~k~~~vhlk~a~~ledegk~edaskhyveaik 1023 (1636)
T KOG3616|consen 990 AKDKMGEVHLKLAMFLEDEGKFEDASKHYVEAIK 1023 (1636)
T ss_pred hhccCccchhHHhhhhhhccchhhhhHhhHHHhh
Confidence 4333222223345555778999988776665554
No 88
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.53 E-value=2.4e-06 Score=82.79 Aligned_cols=222 Identities=16% Similarity=0.131 Sum_probs=125.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhc
Q 042546 413 SVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDV-GDKMWVSLIKGHCVA 491 (671)
Q Consensus 413 ~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~-~~~~~~~li~~~~~~ 491 (671)
-+.++|...|+.+.+. .++.... .|.......+...+...++-+.+..-+++.......+ +..........+...
T Consensus 40 ~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~ 115 (290)
T PF04733_consen 40 YQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATILFHE 115 (290)
T ss_dssp HHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHHHHc
Confidence 3456666677655433 3333333 5665555544444433344445554444433332222 222222233445667
Q ss_pred CCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHH
Q 042546 492 GDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLV----QRGFK 567 (671)
Q Consensus 492 g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~----~g~~~ 567 (671)
|++++|++++..- .+.......+..|.+.++++.|.+.++.|.+ +..|. +...+..++.. .+.+.
T Consensus 116 ~~~~~AL~~l~~~-------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~---~~eD~-~l~qLa~awv~l~~g~e~~~ 184 (290)
T PF04733_consen 116 GDYEEALKLLHKG-------GSLELLALAVQILLKMNRPDLAEKELKNMQQ---IDEDS-ILTQLAEAWVNLATGGEKYQ 184 (290)
T ss_dssp CHHHHHHCCCTTT-------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC---CSCCH-HHHHHHHHHHHHHHTTTCCC
T ss_pred CCHHHHHHHHHcc-------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh---cCCcH-HHHHHHHHHHHHHhCchhHH
Confidence 8888887776532 3556667777888888888888888888864 33443 33334444333 33578
Q ss_pred HHHHHHHHHHhCCCCCCHHHH---HHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHhch
Q 042546 568 DALSLLCLMKDHGFPPFVDPF---IKYVSKSGTSDDAIAFLKGMTSKRFPSMSVVLCLFAAFFQARRH-SEAQDLLSKCP 643 (671)
Q Consensus 568 ~A~~l~~~m~~~~~~p~~~t~---~~~l~~~g~~~~A~~~~~~m~~~~~p~~~~~~~l~~~~~~~g~~-~~A~~~~~~m~ 643 (671)
+|..+|+++.+. ..++..++ ..+....|++++|++++++.....+.+..+...++-+....|+. +.+.+++.++.
T Consensus 185 ~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~ 263 (290)
T PF04733_consen 185 DAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLK 263 (290)
T ss_dssp HHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCH
T ss_pred HHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHH
Confidence 888888887654 44444433 22334678888888888887777666777777777777777877 66777888877
Q ss_pred HhhhccH
Q 042546 644 RYVRNHA 650 (671)
Q Consensus 644 ~~~~~~~ 650 (671)
...+.++
T Consensus 264 ~~~p~h~ 270 (290)
T PF04733_consen 264 QSNPNHP 270 (290)
T ss_dssp HHTTTSH
T ss_pred HhCCCCh
Confidence 6544333
No 89
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.52 E-value=0.00011 Score=65.66 Aligned_cols=198 Identities=14% Similarity=0.098 Sum_probs=158.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-CHHHHHHHHHH
Q 042546 445 MKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSH-AGYAIDLLVNT 523 (671)
Q Consensus 445 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~ 523 (671)
+...|.-+|...|+...|..-+++..+.. +.+.-+|..+-..|.+.|+.+.|.+-|++..+ +.| +..+.|..-.-
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAls---l~p~~GdVLNNYG~F 112 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALS---LAPNNGDVLNNYGAF 112 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHh---cCCCccchhhhhhHH
Confidence 44557778999999999999999999874 34567899999999999999999999999976 333 34455555566
Q ss_pred HHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHhcCChHHH
Q 042546 524 YCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGF--PPFVDPFIKYVSKSGTSDDA 601 (671)
Q Consensus 524 ~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~--~p~~~t~~~~l~~~g~~~~A 601 (671)
+|..|++++|...|+.........--..+|.-+.-+..+.|+.+.|.+.|++..+... .|.........-+.|++-.|
T Consensus 113 LC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~A 192 (250)
T COG3063 113 LCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPA 192 (250)
T ss_pred HHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHH
Confidence 7889999999999999887533333446787777777889999999999999886532 23334456667789999999
Q ss_pred HHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhchHhh
Q 042546 602 IAFLKGMTSKRFPSMSVVLCLFAAFFQARRHSEAQDLLSKCPRYV 646 (671)
Q Consensus 602 ~~~~~~m~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 646 (671)
..+++....++.++.......|..-.+.|+.+.|-++=.+.....
T Consensus 193 r~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~f 237 (250)
T COG3063 193 RLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLF 237 (250)
T ss_pred HHHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 999999998877999998888999999999998887766655433
No 90
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.50 E-value=0.00011 Score=76.84 Aligned_cols=280 Identities=15% Similarity=0.129 Sum_probs=164.6
Q ss_pred CChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHc-C--------CCCCHHHHHHHHHHHHhC
Q 042546 279 DEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSK-G--------YEMEMETCVKVLGRFSER 349 (671)
Q Consensus 279 ~~~~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g--------~~p~~~t~~~li~~~~~~ 349 (671)
|++|.|.+-.+.++ +-..|..|.+.|.+..++|-|.-.+..|... | -.|+ .+=..+.......
T Consensus 742 G~MD~AfksI~~Ik-------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvLAieL 813 (1416)
T KOG3617|consen 742 GSMDAAFKSIQFIK-------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVLAIEL 813 (1416)
T ss_pred ccHHHHHHHHHHHh-------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHHHHHH
Confidence 89999988777665 4478999999999999999998888887642 1 1232 2222333334577
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 042546 350 NMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNK 429 (671)
Q Consensus 350 g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 429 (671)
|.+++|+.+|++-++. ..|=..|-..|.+++|.+
T Consensus 814 gMlEeA~~lYr~ckR~----------------------------------------------DLlNKlyQs~g~w~eA~e 847 (1416)
T KOG3617|consen 814 GMLEEALILYRQCKRY----------------------------------------------DLLNKLYQSQGMWSEAFE 847 (1416)
T ss_pred hhHHHHHHHHHHHHHH----------------------------------------------HHHHHHHHhcccHHHHHH
Confidence 8899999999887652 222223334444555544
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH----------HHCC---------CCCCHHHHHHHHHHHHh
Q 042546 430 ILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHM----------EASG---------SDVGDKMWVSLIKGHCV 490 (671)
Q Consensus 430 ~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m----------~~~g---------~~~~~~~~~~li~~~~~ 490 (671)
+-+.=.+-.+ ..||.....-+-..++.+.|++.|++. .... -..|...|..--...-.
T Consensus 848 iAE~~DRiHL---r~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES 924 (1416)
T KOG3617|consen 848 IAETKDRIHL---RNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLES 924 (1416)
T ss_pred HHhhccceeh---hhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhc
Confidence 4332221111 122333333333344444444444321 1100 02244555555556667
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 042546 491 AGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDAL 570 (671)
Q Consensus 491 ~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 570 (671)
.|+.|.|+.+|...+. |-+++...|-.|+.++|-++-++-. |......|.+.|-..|++.+|.
T Consensus 925 ~GemdaAl~~Y~~A~D----------~fs~VrI~C~qGk~~kAa~iA~esg-------d~AAcYhlaR~YEn~g~v~~Av 987 (1416)
T KOG3617|consen 925 VGEMDAALSFYSSAKD----------YFSMVRIKCIQGKTDKAARIAEESG-------DKAACYHLARMYENDGDVVKAV 987 (1416)
T ss_pred ccchHHHHHHHHHhhh----------hhhheeeEeeccCchHHHHHHHhcc-------cHHHHHHHHHHhhhhHHHHHHH
Confidence 8899999999988766 6678888888999999988776543 4456667888899999999999
Q ss_pred HHHHHHHhCC--C----CCCH-HHH--HHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 042546 571 SLLCLMKDHG--F----PPFV-DPF--IKYVSKSGTSDDAIAFLKGMTSKRFPSMSVVLCLFAAFFQARRHSEAQDLL 639 (671)
Q Consensus 571 ~l~~~m~~~~--~----~p~~-~t~--~~~l~~~g~~~~A~~~~~~m~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 639 (671)
.+|.+.+.-. + +.|. .-+ +...+...+.-.|-++|++..- -...-+..|.|+|.+.+|+++-
T Consensus 988 ~FfTrAqafsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~g~-------~~~~AVmLYHkAGm~~kALelA 1058 (1416)
T KOG3617|consen 988 KFFTRAQAFSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEELGG-------YAHKAVMLYHKAGMIGKALELA 1058 (1416)
T ss_pred HHHHHHHHHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHcch-------hhhHHHHHHHhhcchHHHHHHH
Confidence 9998775210 0 0000 111 1111223333445555554321 1123355678888888877654
No 91
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.48 E-value=0.0019 Score=65.67 Aligned_cols=378 Identities=12% Similarity=0.059 Sum_probs=197.4
Q ss_pred CCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHcCChhHHH
Q 042546 141 ESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLVDVMKKKGYG-VASHVRNKMTEKFEKEGLESDLE 219 (671)
Q Consensus 141 ~~~~~~A~~~f~~m~~~~~~~~~~~~~n~li~~~~~~g~~~~a~~l~~~m~~~g~~-p~~~t~~~ll~~~~~~g~~~~~~ 219 (671)
.+.+++|+...+.... -|..+-..=-..+-+.|++++|+++|+.+.+.+.. -|...-..++.+-...
T Consensus 92 lnk~Dealk~~~~~~~-----~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l------- 159 (652)
T KOG2376|consen 92 LNKLDEALKTLKGLDR-----LDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAAL------- 159 (652)
T ss_pred cccHHHHHHHHhcccc-----cchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhh-------
Confidence 4788888888875444 33334444456677888888888888888776432 1222222333222211
Q ss_pred HHHHHHHcCCC--CChHHHHHHHHHHHHhcCCChhHHHHHHhhcccccChHHHHHHHHHhCCChHHHHHHHHHHHH----
Q 042546 220 KLKGIFATGSI--DNSIEKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEE---- 293 (671)
Q Consensus 220 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~f~~~~~---- 293 (671)
.+. +....+. .+.........|.+... |++.+|++++....+
T Consensus 160 ~~~-~~q~v~~v~e~syel~yN~Ac~~i~~-------------------------------gky~qA~elL~kA~~~~~e 207 (652)
T KOG2376|consen 160 QVQ-LLQSVPEVPEDSYELLYNTACILIEN-------------------------------GKYNQAIELLEKALRICRE 207 (652)
T ss_pred hHH-HHHhccCCCcchHHHHHHHHHHHHhc-------------------------------ccHHHHHHHHHHHHHHHHH
Confidence 010 1111111 12222333333333333 677777777665510
Q ss_pred ---cC-----CCCCCHH-HHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHH----HHHHHHHHHhCCChH-HHHHHH
Q 042546 294 ---SG-----FVKHDES-SYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMET----CVKVLGRFSERNMVK-EAVDLY 359 (671)
Q Consensus 294 ---~~-----~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t----~~~li~~~~~~g~~~-~a~~l~ 359 (671)
+. +++-+.. .---|.-++-..|+-++|..++....++. .+|... -|.++..-....-++ .++..+
T Consensus 208 ~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k 286 (652)
T KOG2376|consen 208 KLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSK 286 (652)
T ss_pred hhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHH
Confidence 00 0011111 11223455678899999999999988875 345422 233332221111111 122222
Q ss_pred HHHHhC-----------CCCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHhc--CCHH
Q 042546 360 EFAMAC-----------KNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRE-NGNVLTDAMLNSVLKALISV--GRMG 425 (671)
Q Consensus 360 ~~m~~~-----------g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~li~~~~~~--g~~~ 425 (671)
+..... .-+-...--+.++..+...+. ++-+.... .+..|. ..+.+++..+.+. ....
T Consensus 287 ~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~-------q~r~~~a~lp~~~p~-~~~~~ll~~~t~~~~~~~~ 358 (652)
T KOG2376|consen 287 KSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMD-------QVRELSASLPGMSPE-SLFPILLQEATKVREKKHK 358 (652)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH-------HHHHHHHhCCccCch-HHHHHHHHHHHHHHHHHHh
Confidence 222110 000001111223333322111 11111111 122232 3444454443332 2366
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH--------HHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 042546 426 ECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMD--------HMEASGSDVGDKMWVSLIKGHCVAGDLDKA 497 (671)
Q Consensus 426 ~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~--------~m~~~g~~~~~~~~~~li~~~~~~g~~~~a 497 (671)
+|.+++....+..-.-..++--.++......|+++.|.+++. .+.+.+..|- +..++...+.+.++-+.|
T Consensus 359 ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~--~V~aiv~l~~~~~~~~~a 436 (652)
T KOG2376|consen 359 KAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPG--TVGAIVALYYKIKDNDSA 436 (652)
T ss_pred hhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChh--HHHHHHHHHHhccCCccH
Confidence 777777766654322234566667777888999999999999 5555555554 445566667777777777
Q ss_pred HHHHHHHHHcC-CCCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 042546 498 ADCFQKMVEKE-GTSHAGY----AIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSL 572 (671)
Q Consensus 498 ~~~~~~m~~~~-g~~p~~~----~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l 572 (671)
.+++.+..... .-.+... ++.-+..--.+.|+.++|..+++++.+. ..+|..+...++.+|++.. .+.|..+
T Consensus 437 ~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~--n~~d~~~l~~lV~a~~~~d-~eka~~l 513 (652)
T KOG2376|consen 437 SAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKF--NPNDTDLLVQLVTAYARLD-PEKAESL 513 (652)
T ss_pred HHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHh--CCchHHHHHHHHHHHHhcC-HHHHHHH
Confidence 77776665410 0111112 2333333334679999999999999874 4678889999999998764 7888887
Q ss_pred HHHH
Q 042546 573 LCLM 576 (671)
Q Consensus 573 ~~~m 576 (671)
-+.+
T Consensus 514 ~k~L 517 (652)
T KOG2376|consen 514 SKKL 517 (652)
T ss_pred hhcC
Confidence 7655
No 92
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.39 E-value=1.5e-05 Score=77.40 Aligned_cols=147 Identities=16% Similarity=0.084 Sum_probs=62.3
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCC
Q 042546 418 LISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCV----AGD 493 (671)
Q Consensus 418 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~ 493 (671)
+...|++++|++++..- .+.......+..|.+.++++.|.+.++.|.+. ..|.. ..-+..++.. .+.
T Consensus 112 ~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~eD~~-l~qLa~awv~l~~g~e~ 182 (290)
T PF04733_consen 112 LFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQI--DEDSI-LTQLAEAWVNLATGGEK 182 (290)
T ss_dssp HCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--SCCHH-HHHHHHHHHHHHHTTTC
T ss_pred HHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcHH-HHHHHHHHHHHHhCchh
Confidence 34455555555554321 23344444555555555555555555555543 12222 2222222211 224
Q ss_pred HHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH-HHHHHH
Q 042546 494 LDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGF-KDALSL 572 (671)
Q Consensus 494 ~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~-~~A~~l 572 (671)
+.+|..+|+++.+ ...++..+.+.+..+....|++++|.+++.+...+ -.-+..+...++......|+. +.+.+.
T Consensus 183 ~~~A~y~f~El~~--~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~--~~~~~d~LaNliv~~~~~gk~~~~~~~~ 258 (290)
T PF04733_consen 183 YQDAFYIFEELSD--KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEK--DPNDPDTLANLIVCSLHLGKPTEAAERY 258 (290)
T ss_dssp CCHHHHHHHHHHC--CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC---CCHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred HHHHHHHHHHHHh--ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--ccCCHHHHHHHHHHHHHhCCChhHHHHH
Confidence 5555555555443 23344445555555555555555555555554332 111223333344444444444 334444
Q ss_pred HHHHH
Q 042546 573 LCLMK 577 (671)
Q Consensus 573 ~~~m~ 577 (671)
+.+++
T Consensus 259 l~qL~ 263 (290)
T PF04733_consen 259 LSQLK 263 (290)
T ss_dssp HHHCH
T ss_pred HHHHH
Confidence 44444
No 93
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.37 E-value=4.3e-07 Score=56.86 Aligned_cols=35 Identities=26% Similarity=0.281 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCCH
Q 042546 165 KTYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVAS 199 (671)
Q Consensus 165 ~~~n~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~ 199 (671)
++||+||.+|++.|++++|.++|++|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 37999999999999999999999999999999984
No 94
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.35 E-value=0.0078 Score=65.03 Aligned_cols=244 Identities=14% Similarity=0.088 Sum_probs=120.1
Q ss_pred CChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHH
Q 042546 279 DEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDL 358 (671)
Q Consensus 279 ~~~~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l 358 (671)
+-.++|..+|+.. ..+....+.||.- -+.+|.|.++-++.. ....|+.+..+-.+.|.+.+|.+-
T Consensus 1062 ~LyEEAF~ifkkf------~~n~~A~~VLie~---i~~ldRA~efAe~~n------~p~vWsqlakAQL~~~~v~dAieS 1126 (1666)
T KOG0985|consen 1062 QLYEEAFAIFKKF------DMNVSAIQVLIEN---IGSLDRAYEFAERCN------EPAVWSQLAKAQLQGGLVKDAIES 1126 (1666)
T ss_pred hHHHHHHHHHHHh------cccHHHHHHHHHH---hhhHHHHHHHHHhhC------ChHHHHHHHHHHHhcCchHHHHHH
Confidence 4567777777653 3455666666653 355666666655433 345777888777777777777776
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 042546 359 YEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGG 438 (671)
Q Consensus 359 ~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 438 (671)
|-+.- |...|.-+++...+.|..+ ...+.+...++..-.|.. =+.||-+|++.+++.+-++...
T Consensus 1127 yikad------Dps~y~eVi~~a~~~~~~e--dLv~yL~MaRkk~~E~~i--d~eLi~AyAkt~rl~elE~fi~------ 1190 (1666)
T KOG0985|consen 1127 YIKAD------DPSNYLEVIDVASRTGKYE--DLVKYLLMARKKVREPYI--DSELIFAYAKTNRLTELEEFIA------ 1190 (1666)
T ss_pred HHhcC------CcHHHHHHHHHHHhcCcHH--HHHHHHHHHHHhhcCccc--hHHHHHHHHHhchHHHHHHHhc------
Confidence 65432 3333444444444444322 111111111122222211 2345555555555544443332
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHH
Q 042546 439 FIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAID 518 (671)
Q Consensus 439 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~ 518 (671)
-||......+-+-|...|.++.|.-+|.. +.-|..+...+...|++..|...-++. .+..||-
T Consensus 1191 -gpN~A~i~~vGdrcf~~~~y~aAkl~y~~---------vSN~a~La~TLV~LgeyQ~AVD~aRKA-------ns~ktWK 1253 (1666)
T KOG0985|consen 1191 -GPNVANIQQVGDRCFEEKMYEAAKLLYSN---------VSNFAKLASTLVYLGEYQGAVDAARKA-------NSTKTWK 1253 (1666)
T ss_pred -CCCchhHHHHhHHHhhhhhhHHHHHHHHH---------hhhHHHHHHHHHHHHHHHHHHHHhhhc-------cchhHHH
Confidence 35555555555555555555555554432 222445555555555555554433332 1334555
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 042546 519 LLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLM 576 (671)
Q Consensus 519 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m 576 (671)
-+-.+|...+.+.-| +|.. ..+.....-...++.-|-..|.+++.+.+++.-
T Consensus 1254 ~VcfaCvd~~EFrlA-----QiCG-L~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~ 1305 (1666)
T KOG0985|consen 1254 EVCFACVDKEEFRLA-----QICG-LNIIVHADELEELIEYYQDRGYFEELISLLEAG 1305 (1666)
T ss_pred HHHHHHhchhhhhHH-----HhcC-ceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhh
Confidence 555555544443332 1211 112223334445666666666666666665543
No 95
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.33 E-value=0.0048 Score=62.15 Aligned_cols=146 Identities=10% Similarity=0.027 Sum_probs=113.1
Q ss_pred HHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHH
Q 042546 494 LDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKP-WHTTYEELIKNLLVQRGFKDALSL 572 (671)
Q Consensus 494 ~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~l 572 (671)
.+...+.+++......+.|+. +|...++.-.+..-+..|..+|.+..+. +..+ ++..+++++.-|| .++.+-|.++
T Consensus 347 ~~~~~~~~~~ll~~~~~~~tL-v~~~~mn~irR~eGlkaaR~iF~kaR~~-~r~~hhVfVa~A~mEy~c-skD~~~AfrI 423 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLTL-VYCQYMNFIRRAEGLKAARKIFKKARED-KRTRHHVFVAAALMEYYC-SKDKETAFRI 423 (656)
T ss_pred hhhhHHHHHHHHhhhccCCce-ehhHHHHHHHHhhhHHHHHHHHHHHhhc-cCCcchhhHHHHHHHHHh-cCChhHHHHH
Confidence 555666777776645566665 7788888888889999999999999875 5555 7778888888666 5677999999
Q ss_pred HHHHHhCCCCCCHH----HHHHHHHhcCChHHHHHHHHHhhhCC-CC--CHHHHHHHHHHHHHcCCHHHHHHHHHhchH
Q 042546 573 LCLMKDHGFPPFVD----PFIKYVSKSGTSDDAIAFLKGMTSKR-FP--SMSVVLCLFAAFFQARRHSEAQDLLSKCPR 644 (671)
Q Consensus 573 ~~~m~~~~~~p~~~----t~~~~l~~~g~~~~A~~~~~~m~~~~-~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 644 (671)
|+.-.++ .+|.. .|++.|.+.++-..|..+|++..... ++ ....|..+++-=..-|+++.+.++-+++-.
T Consensus 424 FeLGLkk--f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~ 500 (656)
T KOG1914|consen 424 FELGLKK--FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFT 500 (656)
T ss_pred HHHHHHh--cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 9965432 34443 34677789999999999999998863 23 457899999988999999999998888764
No 96
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.33 E-value=0.0015 Score=75.87 Aligned_cols=334 Identities=12% Similarity=0.016 Sum_probs=194.1
Q ss_pred HHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCC--C----CCCHHHHHHHHHHHHhc
Q 042546 311 LGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACK--N----KPSVNCCTFLLRKIVVS 384 (671)
Q Consensus 311 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~g--~----~p~~~~~~~ll~~~~~~ 384 (671)
....|+++.+...++.+.......+..........+...|++++|..++......- . .|....-...+.+....
T Consensus 384 l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 463 (903)
T PRK04841 384 LFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAI 463 (903)
T ss_pred HHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHH
Confidence 44557777777776665322111122222334445567788899888888765321 1 11111111112222222
Q ss_pred CcccHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC---CCC--HHHHHHHHHHHHh
Q 042546 385 KQLDMRLFSKVVRVFRENGNVLTD----AMLNSVLKALISVGRMGECNKILKAMEEGGF---IAS--SNMKSKIAFRLSS 455 (671)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---~~~--~~~~~~li~~~~~ 455 (671)
...+.+.+....+.....-...+. ...+.+...+...|++++|...+.+.....- .+. ..++..+...+..
T Consensus 464 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~ 543 (903)
T PRK04841 464 NDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFA 543 (903)
T ss_pred hCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHH
Confidence 222334444445444332111111 2445566677889999999999988764210 111 2345566677888
Q ss_pred cCCHHHHHHHHHHHHH----CCCC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCC--CHHHHHHHHHHHH
Q 042546 456 AGKKDEANEFMDHMEA----SGSD--V-GDKMWVSLIKGHCVAGDLDKAADCFQKMVEKE-GTSH--AGYAIDLLVNTYC 525 (671)
Q Consensus 456 ~g~~~~A~~~~~~m~~----~g~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-g~~p--~~~~~~~li~~~~ 525 (671)
.|++++|...+++... .|.. + ....+..+...+...|++++|...+++..... ...+ ....+..+...+.
T Consensus 544 ~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~ 623 (903)
T PRK04841 544 QGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISL 623 (903)
T ss_pred CCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHH
Confidence 9999999999887654 2211 1 22334455566777899999999988875410 1112 2333444556778
Q ss_pred hcCCHHHHHHHHHHHHHhCCCCCCHHHHH-----HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH------HHHHHHHHh
Q 042546 526 SKNRAIDACKFVHNCVREYDLKPWHTTYE-----ELIKNLLVQRGFKDALSLLCLMKDHGFPPFV------DPFIKYVSK 594 (671)
Q Consensus 526 ~~g~~~~A~~~~~~m~~~~~~~p~~~~~~-----~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~------~t~~~~l~~ 594 (671)
..|+.++|.+.+...............+. ..+..+...|+.+.|.+++............ ..+...+..
T Consensus 624 ~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~ 703 (903)
T PRK04841 624 ARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQIL 703 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHH
Confidence 89999999999888754211111111111 1223445588999999998775532211111 123445678
Q ss_pred cCChHHHHHHHHHhhhC----CCC--CHHHHHHHHHHHHHcCCHHHHHHHHHhchH
Q 042546 595 SGTSDDAIAFLKGMTSK----RFP--SMSVVLCLFAAFFQARRHSEAQDLLSKCPR 644 (671)
Q Consensus 595 ~g~~~~A~~~~~~m~~~----~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 644 (671)
.|+.++|...+++.... +.+ ...+...+..+|.+.|+.++|.+.+.+..+
T Consensus 704 ~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~ 759 (903)
T PRK04841 704 LGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALK 759 (903)
T ss_pred cCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 89999999999887652 221 234567778889999999999999988654
No 97
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.32 E-value=0.0028 Score=58.81 Aligned_cols=308 Identities=8% Similarity=-0.013 Sum_probs=179.4
Q ss_pred CCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCCHHHHHHH-HHHHHHcCChhHHH
Q 042546 141 ESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRNKM-TEKFEKEGLESDLE 219 (671)
Q Consensus 141 ~~~~~~A~~~f~~m~~~~~~~~~~~~~n~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~l-l~~~~~~g~~~~~~ 219 (671)
..++.+|.++...-.++.+ ++....+.+-..|-...++..|-..++++... .|...-|.-- -..+-+.+.+.++.
T Consensus 23 d~ry~DaI~~l~s~~Er~p--~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY~A~i~ADAL 98 (459)
T KOG4340|consen 23 DARYADAIQLLGSELERSP--RSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLYKACIYADAL 98 (459)
T ss_pred HhhHHHHHHHHHHHHhcCc--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHHHhcccHHHH
Confidence 4788999998888776332 46677778888899999999999999999766 3443333211 12333455666776
Q ss_pred HHHHHHHcCCCCChHHHHHHHHHHHHhcCCChhHHHHHHhhcccccChHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC
Q 042546 220 KLKGIFATGSIDNSIEKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKH 299 (671)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~ 299 (671)
++..++..- ..++....+ +...++...+++..+..+.++... +.
T Consensus 99 rV~~~~~D~-----------------------~~L~~~~lq---------LqaAIkYse~Dl~g~rsLveQlp~----en 142 (459)
T KOG4340|consen 99 RVAFLLLDN-----------------------PALHSRVLQ---------LQAAIKYSEGDLPGSRSLVEQLPS----EN 142 (459)
T ss_pred HHHHHhcCC-----------------------HHHHHHHHH---------HHHHHhcccccCcchHHHHHhccC----CC
Confidence 665544321 111111111 111222223677777777776653 34
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHH----H
Q 042546 300 DESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCC----T 375 (671)
Q Consensus 300 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~----~ 375 (671)
+..+.+..-....+.|+++.|++-|....+-+---....||..+..| +.|+.+.|++...++.++|++.....- .
T Consensus 143 ~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy-~~~qyasALk~iSEIieRG~r~HPElgIGm~t 221 (459)
T KOG4340|consen 143 EADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHY-SSRQYASALKHISEIIERGIRQHPELGIGMTT 221 (459)
T ss_pred ccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHH-hhhhHHHHHHHHHHHHHhhhhcCCccCcccee
Confidence 55666666667789999999999999888764334566888777655 678999999999999988875432110 0
Q ss_pred HHHHHHHhcCcccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHH
Q 042546 376 FLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEG-GFIASSNMKSKIAFRLS 454 (671)
Q Consensus 376 ~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~~~~~~~~~li~~~~ 454 (671)
-.+++-. .|+. ..... +++ +..+|.-...+.+.|+++.|.+-+-.|.-+ ....|++|...+.-.=
T Consensus 222 egiDvrs-vgNt-~~lh~--------Sal---~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n- 287 (459)
T KOG4340|consen 222 EGIDVRS-VGNT-LVLHQ--------SAL---VEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN- 287 (459)
T ss_pred ccCchhc-ccch-HHHHH--------HHH---HHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-
Confidence 0000000 0000 00000 000 012333334456778888888877777632 2345566654432211
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 042546 455 SAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKM 504 (671)
Q Consensus 455 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 504 (671)
-.+++.+..+-+.-+.+... -...||..++-.||++.-++-|-.++.+-
T Consensus 288 ~~~~p~~g~~KLqFLL~~nP-fP~ETFANlLllyCKNeyf~lAADvLAEn 336 (459)
T KOG4340|consen 288 MDARPTEGFEKLQFLLQQNP-FPPETFANLLLLYCKNEYFDLAADVLAEN 336 (459)
T ss_pred ccCCccccHHHHHHHHhcCC-CChHHHHHHHHHHhhhHHHhHHHHHHhhC
Confidence 23445555555555555443 33567777777888888777777776653
No 98
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.28 E-value=0.00062 Score=75.62 Aligned_cols=213 Identities=10% Similarity=0.028 Sum_probs=164.5
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 042546 335 EMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSV 414 (671)
Q Consensus 335 ~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 414 (671)
....|-.-|....+.++.++|++++++.+.. +.+. +.+. -..+|.++
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~t-IN~R-----------------EeeE---------------KLNiWiA~ 1503 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKT-INFR-----------------EEEE---------------KLNIWIAY 1503 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhh-CCcc-----------------hhHH---------------HHHHHHHH
Confidence 4678888888899999999999999988742 1110 0000 01247777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 042546 415 LKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDL 494 (671)
Q Consensus 415 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 494 (671)
++.-..-|.-+...++|++..+.. -....|..|...|.+.+..++|-++++.|.+.- .-....|...+..+.+..+-
T Consensus 1504 lNlEn~yG~eesl~kVFeRAcqyc--d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF-~q~~~vW~~y~~fLl~~ne~ 1580 (1710)
T KOG1070|consen 1504 LNLENAYGTEESLKKVFERACQYC--DAYTVHLKLLGIYEKSEKNDEADELLRLMLKKF-GQTRKVWIMYADFLLRQNEA 1580 (1710)
T ss_pred HhHHHhhCcHHHHHHHHHHHHHhc--chHHHHHHHHHHHHHhhcchhHHHHHHHHHHHh-cchhhHHHHHHHHHhcccHH
Confidence 777777788888999999998742 234578889999999999999999999998653 34677899999999999999
Q ss_pred HHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 042546 495 DKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLC 574 (671)
Q Consensus 495 ~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~ 574 (671)
+.|..++.+..+...-.-......-.+..-.++|+.+.+..+|+..... .+-....|+..|+.-.++|+.+.+..+|+
T Consensus 1581 ~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~a--yPKRtDlW~VYid~eik~~~~~~vR~lfe 1658 (1710)
T KOG1070|consen 1581 EAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSA--YPKRTDLWSVYIDMEIKHGDIKYVRDLFE 1658 (1710)
T ss_pred HHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhh--CccchhHHHHHHHHHHccCCHHHHHHHHH
Confidence 9999999998761111113444555666677899999999999998863 34456789999999999999999999999
Q ss_pred HHHhCCCCCCH
Q 042546 575 LMKDHGFPPFV 585 (671)
Q Consensus 575 ~m~~~~~~p~~ 585 (671)
+....++.|-.
T Consensus 1659 Rvi~l~l~~kk 1669 (1710)
T KOG1070|consen 1659 RVIELKLSIKK 1669 (1710)
T ss_pred HHHhcCCChhH
Confidence 99998887643
No 99
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.28 E-value=0.011 Score=63.94 Aligned_cols=463 Identities=13% Similarity=0.121 Sum_probs=239.5
Q ss_pred ChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHc-C----------CCCCHHHHHHHHHHHHH
Q 042546 143 SPDEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLVDVMKKK-G----------YGVASHVRNKMTEKFEK 211 (671)
Q Consensus 143 ~~~~A~~~f~~m~~~~~~~~~~~~~n~li~~~~~~g~~~~a~~l~~~m~~~-g----------~~p~~~t~~~ll~~~~~ 211 (671)
.++++...+..|.. .+++-|....-.+-+-|..+=-.+..+++|+....- | +.-|+...-.-|.|.++
T Consensus 658 sve~s~eclkaml~-~NirqNlQi~VQvatky~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~k 736 (1666)
T KOG0985|consen 658 SVEDSLECLKAMLS-ANIRQNLQIVVQVATKYHEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACK 736 (1666)
T ss_pred CHHHHHHHHHHHHH-HHHHhhhHHHHHHHHHHHHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHh
Confidence 56666666666665 444455555555555555555555666666665432 2 34455555566777777
Q ss_pred cCChhHHHHHHH------------HHHcCCCCCh---------HHHHHHHHHHHHhcCCChhHHHHHHhhcccccChHHH
Q 042546 212 EGLESDLEKLKG------------IFATGSIDNS---------IEKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLV 270 (671)
Q Consensus 212 ~g~~~~~~~~~~------------~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (671)
.|+..+.+++.+ .+.+....+. ...+..++..+++ ....+-|..++.+.+..-.+..+
T Consensus 737 t~QikEvERicresn~YdpErvKNfLkeAkL~DqlPLiiVCDRf~fVhdlvlYLyr-nn~~kyIE~yVQkvNps~~p~Vv 815 (1666)
T KOG0985|consen 737 TGQIKEVERICRESNCYDPERVKNFLKEAKLTDQLPLIIVCDRFDFVHDLVLYLYR-NNLQKYIEIYVQKVNPSRTPQVV 815 (1666)
T ss_pred hccHHHHHHHHhccccCCHHHHHHHHHhccccccCceEEEecccccHHHHHHHHHH-hhHHHHHHHHHhhcCCcccchhh
Confidence 777766554322 2222111110 1111122222222 22233344444444443334444
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCC
Q 042546 271 KFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERN 350 (671)
Q Consensus 271 ~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g 350 (671)
..++.. ...++..+-+-... .| .+.-+-|+.-.-+.+++.--...++...+.|.. |..|+|+|...|...+
T Consensus 816 G~LLD~--dC~E~~ik~Li~~v--~g----q~~~deLv~EvEkRNRLklLlp~LE~~i~eG~~-d~a~hnAlaKIyIDSN 886 (1666)
T KOG0985|consen 816 GALLDV--DCSEDFIKNLILSV--RG----QFPVDELVEEVEKRNRLKLLLPWLESLIQEGSQ-DPATHNALAKIYIDSN 886 (1666)
T ss_pred hhhhcC--CCcHHHHHHHHHHH--hc----cCChHHHHHHHHhhhhHHHHHHHHHHHHhccCc-chHHHhhhhheeecCC
Confidence 433333 22222222111111 01 111223344444555555566666666666654 6777777766665543
Q ss_pred ChHHHH----------HHHHHHHhC-----------CC--------CCCHHHHHHHHHHHHhcCcccH---------HHH
Q 042546 351 MVKEAV----------DLYEFAMAC-----------KN--------KPSVNCCTFLLRKIVVSKQLDM---------RLF 392 (671)
Q Consensus 351 ~~~~a~----------~l~~~m~~~-----------g~--------~p~~~~~~~ll~~~~~~~~~~~---------~~~ 392 (671)
+-.+-. -+=....++ |. --....|...-+-+.+..+++. ..-
T Consensus 887 NnPE~fLkeN~yYDs~vVGkYCEKRDP~lA~vaYerGqcD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~r 966 (1666)
T KOG0985|consen 887 NNPERFLKENPYYDSKVVGKYCEKRDPHLACVAYERGQCDLELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYR 966 (1666)
T ss_pred CChHHhcccCCcchhhHHhhhhcccCCceEEEeecccCCcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHH
Confidence 322110 000000000 00 0001112222222222222221 011
Q ss_pred HHHHHHHHHcCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCCHHHHHHHH------------------
Q 042546 393 SKVVRVFRENGN--VLTDAMLNSVLKALISVGRMGECNKILKAMEEGG--FIASSNMKSKIA------------------ 450 (671)
Q Consensus 393 ~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~~~~~~~~~li------------------ 450 (671)
+++++.....++ ..|+.-.+.-+.++...+-..+-.++++++.-.. +.-+...-|.||
T Consensus 967 RqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAikad~trVm~YI~rL 1046 (1666)
T KOG0985|consen 967 RQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKADRTRVMEYINRL 1046 (1666)
T ss_pred HHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhcChHHHHHHHHHh
Confidence 223333333332 2355566777888888888888888888876321 111111112222
Q ss_pred ---------HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHH
Q 042546 451 ---------FRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLV 521 (671)
Q Consensus 451 ---------~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li 521 (671)
.....++-+|+|..+|++.. .+....+.+|. ..+..+.|.+.-++.. ....|+.+.
T Consensus 1047 dnyDa~~ia~iai~~~LyEEAF~ifkkf~-----~n~~A~~VLie---~i~~ldRA~efAe~~n-------~p~vWsqla 1111 (1666)
T KOG0985|consen 1047 DNYDAPDIAEIAIENQLYEEAFAIFKKFD-----MNVSAIQVLIE---NIGSLDRAYEFAERCN-------EPAVWSQLA 1111 (1666)
T ss_pred ccCCchhHHHHHhhhhHHHHHHHHHHHhc-----ccHHHHHHHHH---HhhhHHHHHHHHHhhC-------ChHHHHHHH
Confidence 22233444566666665432 33444444443 2344555555544432 235688888
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH-HHHHHHhcCChHH
Q 042546 522 NTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDP-FIKYVSKSGTSDD 600 (671)
Q Consensus 522 ~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~t-~~~~l~~~g~~~~ 600 (671)
.+-.+.|.+.+|.+-|-+. -|...|..+++...+.|.+++-.+.+...++..-+|...+ ++-+|++.+++.+
T Consensus 1112 kAQL~~~~v~dAieSyika-------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~eLi~AyAkt~rl~e 1184 (1666)
T KOG0985|consen 1112 KAQLQGGLVKDAIESYIKA-------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDSELIFAYAKTNRLTE 1184 (1666)
T ss_pred HHHHhcCchHHHHHHHHhc-------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchHHHHHHHHHhchHHH
Confidence 8888888888888777543 2567888889999999999998888887777777777644 5788888888777
Q ss_pred HHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhchH
Q 042546 601 AIAFLKGMTSKRFPSMSVVLCLFAAFFQARRHSEAQDLLSKCPR 644 (671)
Q Consensus 601 A~~~~~~m~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 644 (671)
-++++. -||......+.+-|...|.++.|.-++.....
T Consensus 1185 lE~fi~------gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN 1222 (1666)
T KOG0985|consen 1185 LEEFIA------GPNVANIQQVGDRCFEEKMYEAAKLLYSNVSN 1222 (1666)
T ss_pred HHHHhc------CCCchhHHHHhHHHhhhhhhHHHHHHHHHhhh
Confidence 655432 16666777777777778888877777776554
No 100
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.25 E-value=0.0087 Score=69.69 Aligned_cols=268 Identities=11% Similarity=0.032 Sum_probs=165.7
Q ss_pred CCChHHHHHHHHHHHHcCCCCCCH----HHHHHHHHHHHccCChHHHHHHHHHHHHcCC---CC--CHHHHHHHHHHHHh
Q 042546 278 GDEPKKALIFFRWAEESGFVKHDE----SSYNAMASVLGREDCIDRFWKVLDEMRSKGY---EM--EMETCVKVLGRFSE 348 (671)
Q Consensus 278 ~~~~~~A~~~f~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---~p--~~~t~~~li~~~~~ 348 (671)
.|++++|...++....... ..+. ..++.+...+...|++++|...+++.....- .+ ...++..+...+..
T Consensus 465 ~g~~~~A~~~~~~al~~~~-~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~ 543 (903)
T PRK04841 465 DGDPEEAERLAELALAELP-LTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFA 543 (903)
T ss_pred CCCHHHHHHHHHHHHhcCC-CccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHH
Confidence 5899999999988764211 1221 3456666677889999999999888764311 11 12345556667788
Q ss_pred CCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHHHhcCCHH
Q 042546 349 RNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGN---VLTDAMLNSVLKALISVGRMG 425 (671)
Q Consensus 349 ~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~li~~~~~~g~~~ 425 (671)
.|++++|...+++.... ....+. ......+..+...+...|+++
T Consensus 544 ~G~~~~A~~~~~~al~~---------------------------------~~~~~~~~~~~~~~~~~~la~~~~~~G~~~ 590 (903)
T PRK04841 544 QGFLQAAYETQEKAFQL---------------------------------IEEQHLEQLPMHEFLLRIRAQLLWEWARLD 590 (903)
T ss_pred CCCHHHHHHHHHHHHHH---------------------------------HHHhccccccHHHHHHHHHHHHHHHhcCHH
Confidence 99999999998887631 000010 001122344455567779999
Q ss_pred HHHHHHHHHHHC--CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHH-----HHHHHHHHhcCCHH
Q 042546 426 ECNKILKAMEEG--GFIA--SSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDV-GDKMW-----VSLIKGHCVAGDLD 495 (671)
Q Consensus 426 ~A~~~~~~m~~~--g~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~-~~~~~-----~~li~~~~~~g~~~ 495 (671)
+|...+.+.... ...+ ....+..+...+...|+.++|.+.+++........ ....+ ...+..+...|+.+
T Consensus 591 ~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 670 (903)
T PRK04841 591 EAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKE 670 (903)
T ss_pred HHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHH
Confidence 999888876542 1112 23344456667778999999999888875421111 11111 11224455678999
Q ss_pred HHHHHHHHHHHcCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHh---CCCCCC-HHHHHHHHHHHHhcCCHHH
Q 042546 496 KAADCFQKMVEKEGTSHAG---YAIDLLVNTYCSKNRAIDACKFVHNCVRE---YDLKPW-HTTYEELIKNLLVQRGFKD 568 (671)
Q Consensus 496 ~a~~~~~~m~~~~g~~p~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~~p~-~~~~~~li~~~~~~g~~~~ 568 (671)
.|.+++..... ....... ..+..+..++...|+.++|...+++.... .+..++ ..+...+-.++.+.|+.++
T Consensus 671 ~A~~~l~~~~~-~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~ 749 (903)
T PRK04841 671 AAANWLRQAPK-PEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSE 749 (903)
T ss_pred HHHHHHHhcCC-CCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHH
Confidence 99988877544 2211111 11345666788889999999998877542 222222 2345556667788999999
Q ss_pred HHHHHHHHHhCC
Q 042546 569 ALSLLCLMKDHG 580 (671)
Q Consensus 569 A~~l~~~m~~~~ 580 (671)
|.+.+.+..+..
T Consensus 750 A~~~L~~Al~la 761 (903)
T PRK04841 750 AQRVLLEALKLA 761 (903)
T ss_pred HHHHHHHHHHHh
Confidence 999999887643
No 101
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.24 E-value=0.00073 Score=62.52 Aligned_cols=216 Identities=12% Similarity=0.042 Sum_probs=130.2
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 042546 420 SVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAAD 499 (671)
Q Consensus 420 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~ 499 (671)
..+++..+..+.++.... -+..+.+.......+.|++++|.+-|+...+-+---....||..+..| +.|+.+.|++
T Consensus 124 se~Dl~g~rsLveQlp~e---n~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy-~~~qyasALk 199 (459)
T KOG4340|consen 124 SEGDLPGSRSLVEQLPSE---NEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHY-SSRQYASALK 199 (459)
T ss_pred ccccCcchHHHHHhccCC---CccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHH-hhhhHHHHHH
Confidence 467777777777776532 233444444445568999999999999887654344467788776554 5678899999
Q ss_pred HHHHHHHcCCCCC-------------CH--------HHHHHHHH-------HHHhcCCHHHHHHHHHHHHHhCCCCCCHH
Q 042546 500 CFQKMVEKEGTSH-------------AG--------YAIDLLVN-------TYCSKNRAIDACKFVHNCVREYDLKPWHT 551 (671)
Q Consensus 500 ~~~~m~~~~g~~p-------------~~--------~~~~~li~-------~~~~~g~~~~A~~~~~~m~~~~~~~p~~~ 551 (671)
...++.+ .|++- |+ ..-+.++. .+.+.|+.+.|.+.+-.|+.+..-..|.+
T Consensus 200 ~iSEIie-RG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPv 278 (459)
T KOG4340|consen 200 HISEIIE-RGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPV 278 (459)
T ss_pred HHHHHHH-hhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCch
Confidence 9999998 88862 21 11233333 34567888888888888877666666777
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH---HHHHHhcCChHHHHHHHHHhhhCC--CCCHHHHHHHHHHH
Q 042546 552 TYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPF---IKYVSKSGTSDDAIAFLKGMTSKR--FPSMSVVLCLFAAF 626 (671)
Q Consensus 552 ~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~t~---~~~l~~~g~~~~A~~~~~~m~~~~--~p~~~~~~~l~~~~ 626 (671)
|...+.-.- ..+++.+..+-+.-+.+....|- .|| +-.||+..-++.|-.++-+=.... ..+...|+ |++++
T Consensus 279 TLHN~Al~n-~~~~p~~g~~KLqFLL~~nPfP~-ETFANlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~-LLdaL 355 (459)
T KOG4340|consen 279 TLHNQALMN-MDARPTEGFEKLQFLLQQNPFPP-ETFANLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYD-LLDAL 355 (459)
T ss_pred hhhHHHHhc-ccCCccccHHHHHHHHhcCCCCh-HHHHHHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHH-HHHHH
Confidence 665543221 13334333333333333322222 455 445578887888777766543321 13445554 34444
Q ss_pred HH-cCCHHHHHHHHHhch
Q 042546 627 FQ-ARRHSEAQDLLSKCP 643 (671)
Q Consensus 627 ~~-~g~~~~A~~~~~~m~ 643 (671)
.. .-..++|.+-++...
T Consensus 356 It~qT~pEea~KKL~~La 373 (459)
T KOG4340|consen 356 ITCQTAPEEAFKKLDGLA 373 (459)
T ss_pred HhCCCCHHHHHHHHHHHH
Confidence 43 456777777666643
No 102
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.24 E-value=1.6e-06 Score=54.18 Aligned_cols=33 Identities=21% Similarity=0.431 Sum_probs=23.7
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHcCCCCC
Q 042546 303 SYNAMASVLGREDCIDRFWKVLDEMRSKGYEME 335 (671)
Q Consensus 303 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 335 (671)
+||++|.+|++.|++++|.++|++|.+.|++||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 577777777777777777777777777777766
No 103
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.24 E-value=1.6e-06 Score=53.74 Aligned_cols=34 Identities=32% Similarity=0.380 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCC
Q 042546 164 SKTYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGV 197 (671)
Q Consensus 164 ~~~~n~li~~~~~~g~~~~a~~l~~~m~~~g~~p 197 (671)
+.+||++|.+|++.|+++.|.++|++|.+.|++|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 3689999999999999999999999999999988
No 104
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.20 E-value=0.0073 Score=58.80 Aligned_cols=268 Identities=13% Similarity=0.070 Sum_probs=176.5
Q ss_pred CCCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 042546 366 KNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRE-NGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSN 444 (671)
Q Consensus 366 g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~ 444 (671)
.+.|+..+...-+.+++.+...+.......+-.... .-++-|+....++.+.+...|+.++|...|++..-.+ |+..
T Consensus 189 ~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d--py~i 266 (564)
T KOG1174|consen 189 TVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN--PDNV 266 (564)
T ss_pred ecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC--hhhh
Confidence 344555555555555555544443323333322322 3455667788999999999999999999999887432 3322
Q ss_pred -HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCC-HHHHHHHHH
Q 042546 445 -MKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHA-GYAIDLLVN 522 (671)
Q Consensus 445 -~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~-~~~~~~li~ 522 (671)
......-.+.+.|+.+...++...+.... .-....|-.-........+++.|+.+-++.++ +.|+ ...|-.=-.
T Consensus 267 ~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~---~~~r~~~alilKG~ 342 (564)
T KOG1174|consen 267 EAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCID---SEPRNHEALILKGR 342 (564)
T ss_pred hhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhc---cCcccchHHHhccH
Confidence 22223334567899999888888876432 12233344444455667788899888887765 2222 222322224
Q ss_pred HHHhcCCHHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH--HHHHH--HHH-hcC
Q 042546 523 TYCSKNRAIDACKFVHNCVREYDLK-PWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFV--DPFIK--YVS-KSG 596 (671)
Q Consensus 523 ~~~~~g~~~~A~~~~~~m~~~~~~~-p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~--~t~~~--~l~-~~g 596 (671)
.+...|+.++|.-.|..... +. -+...|..|+.+|...|++.+|.-+-+...+. +..+. .|++. ++. ..-
T Consensus 343 lL~~~~R~~~A~IaFR~Aq~---Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~ 418 (564)
T KOG1174|consen 343 LLIALERHTQAVIAFRTAQM---LAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPR 418 (564)
T ss_pred HHHhccchHHHHHHHHHHHh---cchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCch
Confidence 56678999999999998864 34 47789999999999999999999877765432 22222 23332 221 233
Q ss_pred ChHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhch
Q 042546 597 TSDDAIAFLKGMTSKRFPSMSVVLCLFAAFFQARRHSEAQDLLSKCP 643 (671)
Q Consensus 597 ~~~~A~~~~~~m~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 643 (671)
.-++|++++++-.+..|.-....+.+...+...|+.+++..++++-.
T Consensus 419 ~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L 465 (564)
T KOG1174|consen 419 MREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHL 465 (564)
T ss_pred hHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHH
Confidence 45789999998887665556677888899999999999999998844
No 105
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.20 E-value=0.00032 Score=66.87 Aligned_cols=99 Identities=16% Similarity=0.135 Sum_probs=72.7
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-H---HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--H
Q 042546 406 LTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIAS-S---NMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGD--K 479 (671)
Q Consensus 406 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~-~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~--~ 479 (671)
.....+-.+...+.+.|++++|...|++..+.. |+ . .++..+...|.+.|++++|...++++.+....... .
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 108 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRY--PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADY 108 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHH
Confidence 344567778888999999999999999987653 33 2 46777888999999999999999999875422111 1
Q ss_pred HHHHHHHHHHhc--------CCHHHHHHHHHHHHH
Q 042546 480 MWVSLIKGHCVA--------GDLDKAADCFQKMVE 506 (671)
Q Consensus 480 ~~~~li~~~~~~--------g~~~~a~~~~~~m~~ 506 (671)
++..+..++.+. |+.++|.+.++.+.+
T Consensus 109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 143 (235)
T TIGR03302 109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIR 143 (235)
T ss_pred HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHH
Confidence 344444445443 678889999998876
No 106
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.18 E-value=0.00097 Score=69.44 Aligned_cols=202 Identities=16% Similarity=0.154 Sum_probs=144.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 042546 411 LNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCV 490 (671)
Q Consensus 411 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~ 490 (671)
|.-+|.+|+..|+..+|..+..+-.++ +||..-|..+.+.....--+++|+++++..-.. .-..+-....+
T Consensus 427 w~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~ 497 (777)
T KOG1128|consen 427 WDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILS 497 (777)
T ss_pred HHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhccChHHHHHHHHHhhhhhHH-------HHHhhcccccc
Confidence 778888999999999999888887763 688888888888887777889999988865432 11111111233
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHH
Q 042546 491 AGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKP-WHTTYEELIKNLLVQRGFKDA 569 (671)
Q Consensus 491 ~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A 569 (671)
.++++++.+.|+.-.+...+ -..+|-.+-.++.+.++++.|.+.|..... ..| +...||.+-.+|.+.|+-.+|
T Consensus 498 ~~~fs~~~~hle~sl~~npl--q~~~wf~~G~~ALqlek~q~av~aF~rcvt---L~Pd~~eaWnNls~ayi~~~~k~ra 572 (777)
T KOG1128|consen 498 NKDFSEADKHLERSLEINPL--QLGTWFGLGCAALQLEKEQAAVKAFHRCVT---LEPDNAEAWNNLSTAYIRLKKKKRA 572 (777)
T ss_pred chhHHHHHHHHHHHhhcCcc--chhHHHhccHHHHHHhhhHHHHHHHHHHhh---cCCCchhhhhhhhHHHHHHhhhHHH
Confidence 68888998888876552333 344576677777788999999999988864 344 456899999999999999999
Q ss_pred HHHHHHHHhCCCCCCH--HHHHHHHHhcCChHHHHHHHHHhhhC--CCCCHHHHHHHHHHH
Q 042546 570 LSLLCLMKDHGFPPFV--DPFIKYVSKSGTSDDAIAFLKGMTSK--RFPSMSVVLCLFAAF 626 (671)
Q Consensus 570 ~~l~~~m~~~~~~p~~--~t~~~~l~~~g~~~~A~~~~~~m~~~--~~p~~~~~~~l~~~~ 626 (671)
...+++..+.+..|-. ..|..+..+.|.+++|.+.+.++... ...|..+-..++...
T Consensus 573 ~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~~~~d~~vl~~iv~~~ 633 (777)
T KOG1128|consen 573 FRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKKYKDDEVLLIIVRTV 633 (777)
T ss_pred HHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhhhcccchhhHHHHHHH
Confidence 9999998877644432 33456667889999999998887662 122444444444333
No 107
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.18 E-value=0.00032 Score=66.84 Aligned_cols=185 Identities=14% Similarity=0.092 Sum_probs=126.6
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCH-
Q 042546 440 IASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGD----KMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAG- 514 (671)
Q Consensus 440 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~- 514 (671)
......+..+...+.+.|++++|...|+++.... |+. .++..+..++...|++++|...++++.+...-.|..
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 107 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRY--PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDAD 107 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchH
Confidence 3456677888888999999999999999987653 432 466777888999999999999999998723222322
Q ss_pred HHHHHHHHHHHhc--------CCHHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 042546 515 YAIDLLVNTYCSK--------NRAIDACKFVHNCVREYDLKPWHT-TYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFV 585 (671)
Q Consensus 515 ~~~~~li~~~~~~--------g~~~~A~~~~~~m~~~~~~~p~~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~ 585 (671)
.++..+-.++.+. |+.++|.+.|+.+... .|+.. .+..+... +...... ... .
T Consensus 108 ~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~a~~~~----~~~~~~~------~~~-----~ 169 (235)
T TIGR03302 108 YAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR---YPNSEYAPDAKKRM----DYLRNRL------AGK-----E 169 (235)
T ss_pred HHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH---CCCChhHHHHHHHH----HHHHHHH------HHH-----H
Confidence 2344444555544 6788899999888764 34432 22222111 1111110 000 0
Q ss_pred HHHHHHHHhcCChHHHHHHHHHhhhCCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHhchH
Q 042546 586 DPFIKYVSKSGTSDDAIAFLKGMTSKRF---PSMSVVLCLFAAFFQARRHSEAQDLLSKCPR 644 (671)
Q Consensus 586 ~t~~~~l~~~g~~~~A~~~~~~m~~~~~---p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 644 (671)
......+.+.|++++|...++...+..+ .....+..+..++.+.|++++|..+++.+..
T Consensus 170 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~ 231 (235)
T TIGR03302 170 LYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGA 231 (235)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 1334567789999999999999987533 3467889999999999999999999888764
No 108
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.15 E-value=0.0051 Score=62.03 Aligned_cols=83 Identities=11% Similarity=0.053 Sum_probs=65.3
Q ss_pred CChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhCCChHHHHH
Q 042546 279 DEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEME-METCVKVLGRFSERNMVKEAVD 357 (671)
Q Consensus 279 ~~~~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~li~~~~~~g~~~~a~~ 357 (671)
|+++.|...|-....-. ++|.+.|..=..+|++.|++++|++=-.+-.+ +.|+ ...|+-.-.++.-.|++++|+.
T Consensus 16 ~d~~~ai~~~t~ai~l~--p~nhvlySnrsaa~a~~~~~~~al~da~k~~~--l~p~w~kgy~r~Gaa~~~lg~~~eA~~ 91 (539)
T KOG0548|consen 16 GDFETAIRLFTEAIMLS--PTNHVLYSNRSAAYASLGSYEKALKDATKTRR--LNPDWAKGYSRKGAALFGLGDYEEAIL 91 (539)
T ss_pred ccHHHHHHHHHHHHccC--CCccchhcchHHHHHHHhhHHHHHHHHHHHHh--cCCchhhHHHHhHHHHHhcccHHHHHH
Confidence 89999999998776422 66888899999999999999988876555544 4666 5678888888888899999999
Q ss_pred HHHHHHhC
Q 042546 358 LYEFAMAC 365 (671)
Q Consensus 358 l~~~m~~~ 365 (671)
-|.+-++.
T Consensus 92 ay~~GL~~ 99 (539)
T KOG0548|consen 92 AYSEGLEK 99 (539)
T ss_pred HHHHHhhc
Confidence 88876643
No 109
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.13 E-value=0.00015 Score=75.16 Aligned_cols=218 Identities=12% Similarity=0.024 Sum_probs=172.9
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 042546 404 NVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVS 483 (671)
Q Consensus 404 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ 483 (671)
.+|-...-..+...+...|-..+|..+|+++. .|.-.|.+|+..|+..+|..+..+-.++ +||...|..
T Consensus 394 lpp~Wq~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~ 462 (777)
T KOG1128|consen 394 LPPIWQLQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCL 462 (777)
T ss_pred CCCcchHHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHH
Confidence 44444455667788999999999999999875 5677899999999999999999888774 799999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 042546 484 LIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQ 563 (671)
Q Consensus 484 li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~ 563 (671)
+.+......-+++|.++++....+ -...++ ....+.++++++.+.|+.-.+.+.. -..+|-.+-.+..+.
T Consensus 463 LGDv~~d~s~yEkawElsn~~sar-----A~r~~~---~~~~~~~~fs~~~~hle~sl~~npl--q~~~wf~~G~~ALql 532 (777)
T KOG1128|consen 463 LGDVLHDPSLYEKAWELSNYISAR-----AQRSLA---LLILSNKDFSEADKHLERSLEINPL--QLGTWFGLGCAALQL 532 (777)
T ss_pred hhhhccChHHHHHHHHHhhhhhHH-----HHHhhc---cccccchhHHHHHHHHHHHhhcCcc--chhHHHhccHHHHHH
Confidence 999988888999999999887551 011111 1122378999999999877664333 345777777777889
Q ss_pred CCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 042546 564 RGFKDALSLLCLMKDHGFPPFV----DPFIKYVSKSGTSDDAIAFLKGMTSKRFPSMSVVLCLFAAFFQARRHSEAQDLL 639 (671)
Q Consensus 564 g~~~~A~~l~~~m~~~~~~p~~----~t~~~~l~~~g~~~~A~~~~~~m~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 639 (671)
++++.|.+-|..-.. ..||. +++..+|.+.|+-.+|...+++..+-...+...|..-+-...+.|.+++|.+.+
T Consensus 533 ek~q~av~aF~rcvt--L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~ 610 (777)
T KOG1128|consen 533 EKEQAAVKAFHRCVT--LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAY 610 (777)
T ss_pred hhhHHHHHHHHHHhh--cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHH
Confidence 999999999998775 57776 456778889999999999999998865667777777777888999999999999
Q ss_pred HhchH
Q 042546 640 SKCPR 644 (671)
Q Consensus 640 ~~m~~ 644 (671)
.++.+
T Consensus 611 ~rll~ 615 (777)
T KOG1128|consen 611 HRLLD 615 (777)
T ss_pred HHHHH
Confidence 98654
No 110
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.13 E-value=3.5e-06 Score=52.16 Aligned_cols=33 Identities=24% Similarity=0.410 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHcCCCC
Q 042546 302 SSYNAMASVLGREDCIDRFWKVLDEMRSKGYEM 334 (671)
Q Consensus 302 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 334 (671)
.+||++|.+|++.|+++.|.++|++|++.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 466666666666666666666666666666665
No 111
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.10 E-value=0.014 Score=58.40 Aligned_cols=199 Identities=12% Similarity=0.036 Sum_probs=141.4
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHH
Q 042546 405 VLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVG-DKMWVS 483 (671)
Q Consensus 405 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~-~~~~~~ 483 (671)
.|+...+...+.+......-..+...+.+-.+. .-...-|..-+ .+...|++++|+..++.+... .|| ...+..
T Consensus 271 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~--~~~aa~YG~A~-~~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~ 345 (484)
T COG4783 271 SPDFQLARARIRAKYEALPNQQAADLLAKRSKR--GGLAAQYGRAL-QTYLAGQYDEALKLLQPLIAA--QPDNPYYLEL 345 (484)
T ss_pred CccHHHHHHHHHHHhccccccchHHHHHHHhCc--cchHHHHHHHH-HHHHhcccchHHHHHHHHHHh--CCCCHHHHHH
Confidence 345555666665544443333343333333321 11222333333 345689999999999998876 454 555666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 042546 484 LIKGHCVAGDLDKAADCFQKMVEKEGTSHA-GYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLV 562 (671)
Q Consensus 484 li~~~~~~g~~~~a~~~~~~m~~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~ 562 (671)
....+.+.++.++|.+.++++.. ..|+ ....-.+-++|.+.|+..+|.++++.... ..+-|...|..|..+|..
T Consensus 346 ~~~i~~~~nk~~~A~e~~~kal~---l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~--~~p~dp~~w~~LAqay~~ 420 (484)
T COG4783 346 AGDILLEANKAKEAIERLKKALA---LDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLF--NDPEDPNGWDLLAQAYAE 420 (484)
T ss_pred HHHHHHHcCChHHHHHHHHHHHh---cCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCCCchHHHHHHHHHHH
Confidence 77889999999999999999976 4566 45566677899999999999999999875 466788899999999999
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHhcCChHHHHHHHHHhhhCC---CCCHHHHHHHHHHHHH
Q 042546 563 QRGFKDALSLLCLMKDHGFPPFVDPFIKYVSKSGTSDDAIAFLKGMTSKR---FPSMSVVLCLFAAFFQ 628 (671)
Q Consensus 563 ~g~~~~A~~l~~~m~~~~~~p~~~t~~~~l~~~g~~~~A~~~~~~m~~~~---~p~~~~~~~l~~~~~~ 628 (671)
.|+..+|..-..++ +.-.|++++|+..+....+.. .|+..-+...|+....
T Consensus 421 ~g~~~~a~~A~AE~---------------~~~~G~~~~A~~~l~~A~~~~~~~~~~~aR~dari~~~~~ 474 (484)
T COG4783 421 LGNRAEALLARAEG---------------YALAGRLEQAIIFLMRASQQVKLGFPDWARADARIDQLRQ 474 (484)
T ss_pred hCchHHHHHHHHHH---------------HHhCCCHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHH
Confidence 99999988766655 445799999999999888743 4555556666665443
No 112
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.10 E-value=0.01 Score=56.61 Aligned_cols=57 Identities=5% Similarity=-0.096 Sum_probs=34.3
Q ss_pred HHHHHccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHc
Q 042546 171 LRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRNKMTEKFEKEGLESDLEKLKGIFAT 227 (671)
Q Consensus 171 i~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~~~~~~~~~~ 227 (671)
+.-+..+.++..|+.+++--...+-+-...+-.-+-..+-+.|+.++|.........
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~ 85 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMN 85 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhc
Confidence 444566777888888877665443222222222233455688988888877766555
No 113
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.06 E-value=0.0082 Score=60.04 Aligned_cols=150 Identities=15% Similarity=0.107 Sum_probs=119.9
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCH
Q 042546 416 KALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVG-DKMWVSLIKGHCVAGDL 494 (671)
Q Consensus 416 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~ 494 (671)
-.+...|+.++|+..++.+.+.- +-|..-+......+.+.++.++|.+.++.+... .|+ ...+-.+-.++.+.|+.
T Consensus 314 ~~~~~~~~~d~A~~~l~~L~~~~-P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~ 390 (484)
T COG4783 314 LQTYLAGQYDEALKLLQPLIAAQ-PDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKP 390 (484)
T ss_pred HHHHHhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCCh
Confidence 34567899999999999988663 445566677788899999999999999999886 566 56677788999999999
Q ss_pred HHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 042546 495 DKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLC 574 (671)
Q Consensus 495 ~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~ 574 (671)
.+|..+++.... ..+-|...|..|..+|...|+..++..-..+ +|.-.|+++.|...+.
T Consensus 391 ~eai~~L~~~~~--~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE-------------------~~~~~G~~~~A~~~l~ 449 (484)
T COG4783 391 QEAIRILNRYLF--NDPEDPNGWDLLAQAYAELGNRAEALLARAE-------------------GYALAGRLEQAIIFLM 449 (484)
T ss_pred HHHHHHHHHHhh--cCCCCchHHHHHHHHHHHhCchHHHHHHHHH-------------------HHHhCCCHHHHHHHHH
Confidence 999999999876 4556778899999999999999888665443 4566899999999988
Q ss_pred HHHhCCCCCCHHHHHH
Q 042546 575 LMKDHGFPPFVDPFIK 590 (671)
Q Consensus 575 ~m~~~~~~p~~~t~~~ 590 (671)
...+. .+++..++..
T Consensus 450 ~A~~~-~~~~~~~~aR 464 (484)
T COG4783 450 RASQQ-VKLGFPDWAR 464 (484)
T ss_pred HHHHh-ccCCcHHHHH
Confidence 88765 4555555433
No 114
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=98.05 E-value=4.7e-06 Score=50.29 Aligned_cols=31 Identities=26% Similarity=0.358 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHccCcHHHHHHHHHHHHHcCC
Q 042546 165 KTYNLMLRIVGVHGLVQEFWGLVDVMKKKGY 195 (671)
Q Consensus 165 ~~~n~li~~~~~~g~~~~a~~l~~~m~~~g~ 195 (671)
++||+||++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4899999999999999999999999999875
No 115
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.03 E-value=0.00028 Score=71.34 Aligned_cols=217 Identities=11% Similarity=0.040 Sum_probs=162.4
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 042546 418 LISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKA 497 (671)
Q Consensus 418 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a 497 (671)
+.+.|++.+|.-.|+...+.. +-+...|--|-..-..+++-..|+..+++..+.. +-|....-.|--.|...|.-.+|
T Consensus 295 lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~~A 372 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQNQA 372 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHHHH
Confidence 467899999999999988775 5577889999888889999999999999888764 33567788888889999999999
Q ss_pred HHHHHHHHHcCCCC--------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 042546 498 ADCFQKMVEKEGTS--------HAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDA 569 (671)
Q Consensus 498 ~~~~~~m~~~~g~~--------p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A 569 (671)
+..++.-.. ...+ ++...-.. ........+....++|-++....+..+|...+..|--.|--.|.+++|
T Consensus 373 l~~L~~Wi~-~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdra 449 (579)
T KOG1125|consen 373 LKMLDKWIR-NKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRA 449 (579)
T ss_pred HHHHHHHHH-hCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHH
Confidence 999888765 2211 01000000 112222344556777777777667567777777777778889999999
Q ss_pred HHHHHHHHhCCCCCCHHHHH----HHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHh
Q 042546 570 LSLLCLMKDHGFPPFVDPFI----KYVSKSGTSDDAIAFLKGMTSKRFPSMSVVLCLFAAFFQARRHSEAQDLLSK 641 (671)
Q Consensus 570 ~~l~~~m~~~~~~p~~~t~~----~~l~~~g~~~~A~~~~~~m~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 641 (671)
...|+.... +.|+...+. ..++...+.++|+..+.+..+..|-=+.+...|.-.|...|.++||.+.|-+
T Consensus 450 iDcf~~AL~--v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~ 523 (579)
T KOG1125|consen 450 VDCFEAALQ--VKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLE 523 (579)
T ss_pred HHHHHHHHh--cCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHH
Confidence 999999886 578887663 4556788899999999999886654455566677889999999999988876
No 116
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=97.99 E-value=0.03 Score=58.01 Aligned_cols=396 Identities=14% Similarity=0.046 Sum_probs=223.0
Q ss_pred HHHHHHhcCCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 042546 133 VLKVLKNLESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRNKMTEKFEKE 212 (671)
Q Consensus 133 ~~~~l~~~~~~~~~A~~~f~~m~~~~~~~~~~~~~n~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~ 212 (671)
+..++.+...++++|.+.|........ -|...|--+--.=++.|+++.....-.+..+.. .-....|.....+.--.
T Consensus 80 v~gl~~R~dK~Y~eaiKcy~nAl~~~~--dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~ 156 (700)
T KOG1156|consen 80 VLGLLQRSDKKYDEAIKCYRNALKIEK--DNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLL 156 (700)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHhcCC--CcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHH
Confidence 344455546899999999999876221 345556555444466677777777666666542 22456677777777788
Q ss_pred CChhHHHHHHHHHHcCCC-CChHHHHHHHHHHHHhcCCChhHHHHHHhhcccccChHHHHHHHHHhCCChHHHHHHHHHH
Q 042546 213 GLESDLEKLKGIFATGSI-DNSIEKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWA 291 (671)
Q Consensus 213 g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~f~~~ 291 (671)
|....+..+.+.+.+... ..+....-...+-..++ .+..-.|.+++|++-....
T Consensus 157 g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n-------------------------~i~~E~g~~q~ale~L~~~ 211 (700)
T KOG1156|consen 157 GEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQN-------------------------QILIEAGSLQKALEHLLDN 211 (700)
T ss_pred HHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHH-------------------------HHHHHcccHHHHHHHHHhh
Confidence 888888877777766442 11111111111111100 0000026677777766554
Q ss_pred HHcCCCCCCHHH-HHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-hCCChHHHH-HHHHHHHhC---
Q 042546 292 EESGFVKHDESS-YNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFS-ERNMVKEAV-DLYEFAMAC--- 365 (671)
Q Consensus 292 ~~~~~~~~~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~-~~g~~~~a~-~l~~~m~~~--- 365 (671)
..+ .-|-.. --+-...+.+.+++++|..++..+..+ .||..-|...+..+. +-.+.-+++ .+|....+.
T Consensus 212 e~~---i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r 286 (700)
T KOG1156|consen 212 EKQ---IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPR 286 (700)
T ss_pred hhH---HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcc
Confidence 321 223222 234456778889999999999999887 577776665554443 333333333 666655432
Q ss_pred CCCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH----HCC---
Q 042546 366 KNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAME----EGG--- 438 (671)
Q Consensus 366 g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~----~~g--- 438 (671)
.-.|-....+.+ .+..-.......+....+.|+++ ++..+.+.|-.-...+--+++.-.+. ..|
T Consensus 287 ~e~p~Rlplsvl------~~eel~~~vdkyL~~~l~Kg~p~---vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~ 357 (700)
T KOG1156|consen 287 HECPRRLPLSVL------NGEELKEIVDKYLRPLLSKGVPS---VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFN 357 (700)
T ss_pred cccchhccHHHh------CcchhHHHHHHHHHHHhhcCCCc---hhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCC
Confidence 111211111111 12111234455555555666654 34444444433222221112221111 111
Q ss_pred -------CCCCHHHHH--HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 042546 439 -------FIASSNMKS--KIAFRLSSAGKKDEANEFMDHMEASGSDVGDK-MWVSLIKGHCVAGDLDKAADCFQKMVEKE 508 (671)
Q Consensus 439 -------~~~~~~~~~--~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 508 (671)
-+|....|+ .++..|-+.|+++.|...++..... .|+.+ .|..=.+.+.+.|++++|..++++..+ .
T Consensus 358 ~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~e-l 434 (700)
T KOG1156|consen 358 FLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQE-L 434 (700)
T ss_pred cccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHh-c
Confidence 145555554 4677788899999999999988765 55543 344555778889999999999998876 2
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHH--------HHHHH--HHHHHhcCCHHHHHHHHHHHH
Q 042546 509 GTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHT--------TYEEL--IKNLLVQRGFKDALSLLCLMK 577 (671)
Q Consensus 509 g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~--------~~~~l--i~~~~~~g~~~~A~~l~~~m~ 577 (671)
. .||...-+--..-..++.++++|.++.....+. |. +.. +|-.+ -.+|.+.|++..|++=|..+.
T Consensus 435 D-~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~-~~--~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~ 509 (700)
T KOG1156|consen 435 D-TADRAINSKCAKYMLRANEIEEAEEVLSKFTRE-GF--GAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIE 509 (700)
T ss_pred c-chhHHHHHHHHHHHHHccccHHHHHHHHHhhhc-cc--chhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHH
Confidence 2 345444434555556788899999888887653 43 222 33332 235677777877777666554
No 117
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=97.96 E-value=0.0032 Score=68.71 Aligned_cols=135 Identities=8% Similarity=-0.077 Sum_probs=67.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCH-HHHH
Q 042546 477 GDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAG-YAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWH-TTYE 554 (671)
Q Consensus 477 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~-~~~~ 554 (671)
+...+-.|.....+.|..++|+.+++...+ +.||. .....+...+.+.+++++|...+++... ..|+. ....
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~---~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~---~~p~~~~~~~ 158 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQ---RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS---GGSSSAREIL 158 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHh---hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh---cCCCCHHHHH
Confidence 345555555555566666666666666544 34443 2333444555556666666666655543 22332 3334
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHhcCChHHHHHHHHHhhhCCCCCHHHH
Q 042546 555 ELIKNLLVQRGFKDALSLLCLMKDHGFPPFV----DPFIKYVSKSGTSDDAIAFLKGMTSKRFPSMSVV 619 (671)
Q Consensus 555 ~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~----~t~~~~l~~~g~~~~A~~~~~~m~~~~~p~~~~~ 619 (671)
.+-.++.+.|++++|.++|++.... .|+. ..+...+...|+.++|...|+...+...+...-|
T Consensus 159 ~~a~~l~~~g~~~~A~~~y~~~~~~--~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~ 225 (694)
T PRK15179 159 LEAKSWDEIGQSEQADACFERLSRQ--HPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKL 225 (694)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHH
Confidence 4444555566666666666665542 2221 1223444455666666666655555333333333
No 118
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=97.93 E-value=0.0016 Score=59.68 Aligned_cols=114 Identities=10% Similarity=0.070 Sum_probs=59.7
Q ss_pred cCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH----HHHH-HhcCC--hH
Q 042546 527 KNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPF----IKYV-SKSGT--SD 599 (671)
Q Consensus 527 ~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~t~----~~~l-~~~g~--~~ 599 (671)
.++.+++...++..... -..|...|..+...|...|++++|.+.+++..+. .|+...+ ..++ ...|+ .+
T Consensus 52 ~~~~~~~i~~l~~~L~~--~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l--~P~~~~~~~~lA~aL~~~~g~~~~~ 127 (198)
T PRK10370 52 QQTPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWRNDYDNALLAYRQALQL--RGENAELYAALATVLYYQAGQHMTP 127 (198)
T ss_pred chhHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCCCCcH
Confidence 34444444444444432 2334455555555566666666666666655542 3433222 1221 33344 35
Q ss_pred HHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhchH
Q 042546 600 DAIAFLKGMTSKRFPSMSVVLCLFAAFFQARRHSEAQDLLSKCPR 644 (671)
Q Consensus 600 ~A~~~~~~m~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 644 (671)
+|..++++..+..+.+...+..+...+.+.|++++|...|+++.+
T Consensus 128 ~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~ 172 (198)
T PRK10370 128 QTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLD 172 (198)
T ss_pred HHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 666666666665555556666666666666666666666666544
No 119
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.93 E-value=1.1e-05 Score=48.69 Aligned_cols=31 Identities=29% Similarity=0.477 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHcCC
Q 042546 302 SSYNAMASVLGREDCIDRFWKVLDEMRSKGY 332 (671)
Q Consensus 302 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 332 (671)
++||++|++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 3677777777777777777777777776653
No 120
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.91 E-value=0.0082 Score=55.12 Aligned_cols=102 Identities=14% Similarity=0.072 Sum_probs=44.2
Q ss_pred HhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHH---HHHHhcCC
Q 042546 525 CSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLV----QRGFKDALSLLCLMKDHGFPPFVDPFI---KYVSKSGT 597 (671)
Q Consensus 525 ~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~~~~p~~~t~~---~~l~~~g~ 597 (671)
.+..+++-|.+.++.|.+- -+..|.+.|..++.+ .+.+.+|.-+|++|-++ ..|+..++. .+....|+
T Consensus 148 lk~~r~d~A~~~lk~mq~i----ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~ 222 (299)
T KOG3081|consen 148 LKMHRFDLAEKELKKMQQI----DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGR 222 (299)
T ss_pred HHHHHHHHHHHHHHHHHcc----chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcC
Confidence 3444555555555555431 122344434443332 23345555555555432 334433331 11123455
Q ss_pred hHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCC
Q 042546 598 SDDAIAFLKGMTSKRFPSMSVVLCLFAAFFQARR 631 (671)
Q Consensus 598 ~~~A~~~~~~m~~~~~p~~~~~~~l~~~~~~~g~ 631 (671)
+++|..+++....+...++.+...++-.-...|.
T Consensus 223 ~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gk 256 (299)
T KOG3081|consen 223 YEEAESLLEEALDKDAKDPETLANLIVLALHLGK 256 (299)
T ss_pred HHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCC
Confidence 5555555555555444444444444443334443
No 121
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.91 E-value=0.0045 Score=68.37 Aligned_cols=222 Identities=9% Similarity=0.018 Sum_probs=141.6
Q ss_pred CCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHH
Q 042546 298 KHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEME-TCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTF 376 (671)
Q Consensus 298 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ 376 (671)
+.+...|-.|+..+...+++++|.++.+.-.+. .|+.. .|..+...+.+.++.+++..+ .+.. ..+...-|+.
T Consensus 28 p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~--~~~~~~~~~~ 101 (906)
T PRK14720 28 LSKFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL--NLID--SFSQNLKWAI 101 (906)
T ss_pred cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh--hhhh--hcccccchhH
Confidence 456788999999999999999999999976665 45533 333333467778887777777 3332 1222221222
Q ss_pred HHHHHHhcCcccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 042546 377 LLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSA 456 (671)
Q Consensus 377 ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 456 (671)
+ +.+...+.+ ..-+...+-.+..+|-+.|+.++|..+++++.+.. +-|..+.|-+...|+..
T Consensus 102 v---------------e~~~~~i~~--~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~ 163 (906)
T PRK14720 102 V---------------EHICDKILL--YGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE 163 (906)
T ss_pred H---------------HHHHHHHHh--hhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh
Confidence 2 122222222 12223467889999999999999999999999887 67889999999999999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH------------------cCCCCCCHHHHH
Q 042546 457 GKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVE------------------KEGTSHAGYAID 518 (671)
Q Consensus 457 g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~------------------~~g~~p~~~~~~ 518 (671)
++++|.+++.+.... +...+++..+.++|.++.. ..|..--..++-
T Consensus 164 -dL~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~ 227 (906)
T PRK14720 164 -DKEKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLE 227 (906)
T ss_pred -hHHHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHH
Confidence 999999999887654 3444455555555555544 223233334444
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 042546 519 LLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLL 561 (671)
Q Consensus 519 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~ 561 (671)
.+-..|-...+++++..+++.+.+. -.-|.....-++..|.
T Consensus 228 ~l~~~y~~~~~~~~~i~iLK~iL~~--~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 228 DLYEPYKALEDWDEVIYILKKILEH--DNKNNKAREELIRFYK 268 (906)
T ss_pred HHHHHHhhhhhhhHHHHHHHHHHhc--CCcchhhHHHHHHHHH
Confidence 4555566666666666666666542 1223344444554443
No 122
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.90 E-value=0.00036 Score=70.12 Aligned_cols=122 Identities=16% Similarity=0.146 Sum_probs=92.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH----HHHH
Q 042546 517 IDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPF----IKYV 592 (671)
Q Consensus 517 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~t~----~~~l 592 (671)
..+|+..+...++++.|..+|+++.++ .|+. ...|+..+...++-.+|.+++++..+. .|....+ ...|
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~---~pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~--~p~d~~LL~~Qa~fL 244 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRER---DPEV--AVLLARVYLLMNEEVEAIRLLNEALKE--NPQDSELLNLQAEFL 244 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhc---CCcH--HHHHHHHHHhcCcHHHHHHHHHHHHHh--CCCCHHHHHHHHHHH
Confidence 344555666677888888888888764 2543 344666677777778888888877753 3433333 3445
Q ss_pred HhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhchHh
Q 042546 593 SKSGTSDDAIAFLKGMTSKRFPSMSVVLCLFAAFFQARRHSEAQDLLSKCPRY 645 (671)
Q Consensus 593 ~~~g~~~~A~~~~~~m~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 645 (671)
.+.++.+.|.++.+++....|-+..+|..|..+|.+.|++++|+..++.||-.
T Consensus 245 l~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~ 297 (395)
T PF09295_consen 245 LSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCPML 297 (395)
T ss_pred HhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCC
Confidence 68889999999999999888788899999999999999999999999999843
No 123
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.88 E-value=0.06 Score=57.99 Aligned_cols=221 Identities=11% Similarity=-0.051 Sum_probs=125.3
Q ss_pred HHHHHHhcCCCCCHHHHHHH-HHhcCCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCC
Q 042546 117 ISKQLELSGVVFTHEMVLKV-LKNLESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLVDVMKKKGY 195 (671)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~A~~~f~~m~~~~~~~~~~~~~n~li~~~~~~g~~~~a~~l~~~m~~~g~ 195 (671)
+...+.+|+.......+-.. +.+ .|..++|..+++.... .+. .|..|..++-..|.+.|+.++|..+|++..+.
T Consensus 32 ~~kllkk~Pn~~~a~vLkaLsl~r-~gk~~ea~~~Le~~~~-~~~-~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~-- 106 (932)
T KOG2053|consen 32 LGKLLKKHPNALYAKVLKALSLFR-LGKGDEALKLLEALYG-LKG-TDDLTLQFLQNVYRDLGKLDEAVHLYERANQK-- 106 (932)
T ss_pred HHHHHHHCCCcHHHHHHHHHHHHH-hcCchhHHHHHhhhcc-CCC-CchHHHHHHHHHHHHHhhhhHHHHHHHHHHhh--
Confidence 34455666655444333222 234 5999999988888766 332 38889999999999999999999999998866
Q ss_pred CCCHHHHHHHHHHHHHcCChhHHHH-HHHHHHcCCCCChHHHHHHHHHHHHhcC-CChhHHHHHHhhcccccChHHHHHH
Q 042546 196 GVASHVRNKMTEKFEKEGLESDLEK-LKGIFATGSIDNSIEKVASRICKVVRSD-IWGDDVERQLRDLNVTFSNDLVKFV 273 (671)
Q Consensus 196 ~p~~~t~~~ll~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (671)
-|+..-...+..+|.+.+.+..-.+ ..++++..+...-.-|.+..+....... ..... .
T Consensus 107 ~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~~~~~-----------------~-- 167 (932)
T KOG2053|consen 107 YPSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSENELLD-----------------P-- 167 (932)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccCCccccc-----------------c--
Confidence 6788888999999999887766543 4566666665554434333322221111 00000 0
Q ss_pred HHHhCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHccCChHHHHHHH-HHHHHcCCCCCHHHHHHHHHHHHhCCCh
Q 042546 274 VDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVL-DEMRSKGYEMEMETCVKVLGRFSERNMV 352 (671)
Q Consensus 274 ~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~-~~m~~~g~~p~~~t~~~li~~~~~~g~~ 352 (671)
--+.-|.+.++.+.+..|.--+..-.-.-...+-..|++++|++++ ....+.-..-+...-+--+..+...+++
T Consensus 168 -----i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w 242 (932)
T KOG2053|consen 168 -----ILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRW 242 (932)
T ss_pred -----hhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcCh
Confidence 0112344444444443331111111112223334455566666666 3333332233444444555556666666
Q ss_pred HHHHHHHHHHHhCC
Q 042546 353 KEAVDLYEFAMACK 366 (671)
Q Consensus 353 ~~a~~l~~~m~~~g 366 (671)
.+..++-.++...|
T Consensus 243 ~~l~~l~~~Ll~k~ 256 (932)
T KOG2053|consen 243 QELFELSSRLLEKG 256 (932)
T ss_pred HHHHHHHHHHHHhC
Confidence 66666666666543
No 124
>PLN02789 farnesyltranstransferase
Probab=97.83 E-value=0.0078 Score=59.42 Aligned_cols=242 Identities=9% Similarity=0.018 Sum_probs=158.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 042546 410 MLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAG-KKDEANEFMDHMEASGSDVGDKMWVSLIKGH 488 (671)
Q Consensus 410 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~ 488 (671)
++..+-..+...+..++|+.+..++.+.. +-+..+|+.--..+...| +++++++.++++.+.. ..+..+|+.--..+
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l 116 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLA 116 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHH
Confidence 45566667777889999999999988754 344556776666666777 6799999999988765 33455677555555
Q ss_pred HhcCC--HHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc---
Q 042546 489 CVAGD--LDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQ--- 563 (671)
Q Consensus 489 ~~~g~--~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~--- 563 (671)
.+.|. .+++..+++++.+ .. .-|..+|+-..-++.+.|+++++.+.++++.+. -.-|...|+.....+.+.
T Consensus 117 ~~l~~~~~~~el~~~~kal~-~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~--d~~N~sAW~~R~~vl~~~~~l 192 (320)
T PLN02789 117 EKLGPDAANKELEFTRKILS-LD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEE--DVRNNSAWNQRYFVITRSPLL 192 (320)
T ss_pred HHcCchhhHHHHHHHHHHHH-hC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--CCCchhHHHHHHHHHHhcccc
Confidence 56665 3677888888876 22 236777888888888889999999999999874 234556777665555443
Q ss_pred CCH----HHHHHHHHHHHhCCCCCCHHH---HH-HHHHhc----CChHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCC
Q 042546 564 RGF----KDALSLLCLMKDHGFPPFVDP---FI-KYVSKS----GTSDDAIAFLKGMTSKRFPSMSVVLCLFAAFFQARR 631 (671)
Q Consensus 564 g~~----~~A~~l~~~m~~~~~~p~~~t---~~-~~l~~~----g~~~~A~~~~~~m~~~~~p~~~~~~~l~~~~~~~g~ 631 (671)
|.. +++++...++... .|+..+ +. .+|... ++..+|.+++.+.....+.+......|++.|+....
T Consensus 193 ~~~~~~~e~el~y~~~aI~~--~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~ 270 (320)
T PLN02789 193 GGLEAMRDSELKYTIDAILA--NPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQ 270 (320)
T ss_pred ccccccHHHHHHHHHHHHHh--CCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhhhc
Confidence 222 4566776666643 454422 23 333332 445678888888777666778888889999986321
Q ss_pred -HHHHHHHHHhchHhhhccHHHHHHHHhh
Q 042546 632 -HSEAQDLLSKCPRYVRNHADVLNLLYSK 659 (671)
Q Consensus 632 -~~~A~~~~~~m~~~~~~~~~~~~l~~~m 659 (671)
..+....++...........+..++..+
T Consensus 271 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~l 299 (320)
T PLN02789 271 PTAEFRDTVDTLAEELSDSTLAQAVCSEL 299 (320)
T ss_pred cchhhhhhhhccccccccHHHHHHHHHHH
Confidence 1122222222222223456677777766
No 125
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.80 E-value=0.0012 Score=57.22 Aligned_cols=125 Identities=15% Similarity=0.143 Sum_probs=85.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH-----H
Q 042546 515 YAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKP-WHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDP-----F 588 (671)
Q Consensus 515 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~t-----~ 588 (671)
..|..++..+ ..++...+...++.+..+++-.| .....-.+...+...|++++|...|+........|.... +
T Consensus 13 ~~y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~L 91 (145)
T PF09976_consen 13 ALYEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRL 91 (145)
T ss_pred HHHHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence 3455555555 47888888888888877532221 112333344667778999999999999887653332221 2
Q ss_pred HHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHh
Q 042546 589 IKYVSKSGTSDDAIAFLKGMTSKRFPSMSVVLCLFAAFFQARRHSEAQDLLSK 641 (671)
Q Consensus 589 ~~~l~~~g~~~~A~~~~~~m~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 641 (671)
..++...|++++|+..++.... .......+....++|.+.|++++|...|++
T Consensus 92 A~~~~~~~~~d~Al~~L~~~~~-~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQIPD-EAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhccC-cchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 4555688999999999876433 234566778889999999999999998875
No 126
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.78 E-value=0.021 Score=58.30 Aligned_cols=212 Identities=9% Similarity=0.088 Sum_probs=126.2
Q ss_pred CCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhCCChHHHH
Q 042546 278 GDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEM-EMETCVKVLGRFSERNMVKEAV 356 (671)
Q Consensus 278 ~~~~~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~a~ 356 (671)
.|++.+|.-.|+....+. +-+...|--|--....+++-..|+..+.+-.+. .| |....-.|.-.|...|.-.+|+
T Consensus 298 nG~L~~A~LafEAAVkqd--P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~L--dP~NleaLmaLAVSytNeg~q~~Al 373 (579)
T KOG1125|consen 298 NGDLSEAALAFEAAVKQD--PQHAEAWQKLGITQAENENEQNAISALRRCLEL--DPTNLEALMALAVSYTNEGLQNQAL 373 (579)
T ss_pred cCCchHHHHHHHHHHhhC--hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhc--CCccHHHHHHHHHHHhhhhhHHHHH
Confidence 388999999999887654 667899999999999999999999999888876 45 5777788888899999999999
Q ss_pred HHHHHHHhCCCCC--------CHHHHHHHHHHHHhcCccc---HHHHHHHH-HHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 042546 357 DLYEFAMACKNKP--------SVNCCTFLLRKIVVSKQLD---MRLFSKVV-RVFRENGNVLTDAMLNSVLKALISVGRM 424 (671)
Q Consensus 357 ~l~~~m~~~g~~p--------~~~~~~~ll~~~~~~~~~~---~~~~~~~~-~~~~~~~~~~~~~~~~~li~~~~~~g~~ 424 (671)
..++.-.+...+- +...-+. .+..+ ...+.+++ +.....+..+|..+...|--.|--.|++
T Consensus 374 ~~L~~Wi~~~p~y~~l~~a~~~~~~~~~-------~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~ef 446 (579)
T KOG1125|consen 374 KMLDKWIRNKPKYVHLVSAGENEDFENT-------KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEF 446 (579)
T ss_pred HHHHHHHHhCccchhccccCccccccCC-------cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHH
Confidence 9888875432100 0000000 00011 11122222 2222233335555555555555556666
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHH
Q 042546 425 GECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGD-KMWVSLIKGHCVAGDLDKAADCFQK 503 (671)
Q Consensus 425 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~-~~~~~li~~~~~~g~~~~a~~~~~~ 503 (671)
++|.+.|+...... +-|...||.|-..++...+.++|...|++..+. +|+- ...--|--+|...|.+++|.+.|-.
T Consensus 447 draiDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~ 523 (579)
T KOG1125|consen 447 DRAVDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKHLLE 523 (579)
T ss_pred HHHHHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHHHHH
Confidence 66666666555443 334455666666666666666666666665543 3432 1222233345555666665555543
No 127
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=97.78 E-value=0.00086 Score=57.93 Aligned_cols=92 Identities=12% Similarity=-0.071 Sum_probs=51.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 042546 413 SVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAG 492 (671)
Q Consensus 413 ~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 492 (671)
.....+...|++++|...|+...... +.+...|..+...+.+.|++++|...|+...+.. +.+...+..+..++...|
T Consensus 29 ~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~~g 106 (144)
T PRK15359 29 ASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKMMG 106 (144)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHcC
Confidence 34445555666666666666655443 3455555555555666666666666666655443 234455555555555566
Q ss_pred CHHHHHHHHHHHHH
Q 042546 493 DLDKAADCFQKMVE 506 (671)
Q Consensus 493 ~~~~a~~~~~~m~~ 506 (671)
+.++|.+.|+...+
T Consensus 107 ~~~eAi~~~~~Al~ 120 (144)
T PRK15359 107 EPGLAREAFQTAIK 120 (144)
T ss_pred CHHHHHHHHHHHHH
Confidence 66666666655544
No 128
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=97.76 E-value=0.0019 Score=59.05 Aligned_cols=116 Identities=10% Similarity=0.004 Sum_probs=50.3
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCC--HHHHHH
Q 042546 423 RMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKG-HCVAGD--LDKAAD 499 (671)
Q Consensus 423 ~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~-~~~~g~--~~~a~~ 499 (671)
+.+++...++...+.. +.|...|..+...|...|++++|...|++..+.. .-+...+..+..+ +...|+ .++|.+
T Consensus 54 ~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A~~ 131 (198)
T PRK10370 54 TPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQTRE 131 (198)
T ss_pred hHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHHHH
Confidence 3344444444433333 3444445555555555555555555555444432 1233334333333 233333 245555
Q ss_pred HHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 042546 500 CFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVR 542 (671)
Q Consensus 500 ~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 542 (671)
++++..+ .. .-+...+..+...+.+.|++++|...|+++.+
T Consensus 132 ~l~~al~-~d-P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~ 172 (198)
T PRK10370 132 MIDKALA-LD-ANEVTALMLLASDAFMQADYAQAIELWQKVLD 172 (198)
T ss_pred HHHHHHH-hC-CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 5555444 11 11233344444444455555555555555443
No 129
>PLN02789 farnesyltranstransferase
Probab=97.76 E-value=0.053 Score=53.62 Aligned_cols=163 Identities=9% Similarity=0.016 Sum_probs=89.4
Q ss_pred HHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH--HHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 042546 410 MLNSVLKALISVG-RMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKK--DEANEFMDHMEASGSDVGDKMWVSLIK 486 (671)
Q Consensus 410 ~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~--~~A~~~~~~m~~~g~~~~~~~~~~li~ 486 (671)
+|+.--.++.+.| ++++++..++++.+.. +.+..+|+.---.+.+.|+. ++++.+++++.+.. .-|..+|+-...
T Consensus 73 aW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w 150 (320)
T PLN02789 73 VWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLD-AKNYHAWSHRQW 150 (320)
T ss_pred HHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhC-cccHHHHHHHHH
Confidence 4444444555555 4677777777776554 34445566554445555542 56666776666554 345666777666
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhc---CCH----HHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 042546 487 GHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSK---NRA----IDACKFVHNCVREYDLKPWHTTYEELIKN 559 (671)
Q Consensus 487 ~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~---g~~----~~A~~~~~~m~~~~~~~p~~~~~~~li~~ 559 (671)
.+.+.|+++++++.++++.+ .... |...|+.....+.+. |.. +++.....+.... .+-|...|+-+...
T Consensus 151 ~l~~l~~~~eeL~~~~~~I~-~d~~-N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~--~P~N~SaW~Yl~~l 226 (320)
T PLN02789 151 VLRTLGGWEDELEYCHQLLE-EDVR-NNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILA--NPRNESPWRYLRGL 226 (320)
T ss_pred HHHHhhhHHHHHHHHHHHHH-HCCC-chhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHh--CCCCcCHHHHHHHH
Confidence 67777777777777777766 3322 334454444444333 222 3445555444432 22344566666555
Q ss_pred HHhc----CCHHHHHHHHHHHHh
Q 042546 560 LLVQ----RGFKDALSLLCLMKD 578 (671)
Q Consensus 560 ~~~~----g~~~~A~~l~~~m~~ 578 (671)
+... ++..+|.+.+.+..+
T Consensus 227 l~~~~~~l~~~~~~~~~~~~~~~ 249 (320)
T PLN02789 227 FKDDKEALVSDPEVSSVCLEVLS 249 (320)
T ss_pred HhcCCcccccchhHHHHHHHhhc
Confidence 5552 233456666666544
No 130
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.74 E-value=0.00046 Score=69.63 Aligned_cols=121 Identities=12% Similarity=0.097 Sum_probs=56.3
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 042546 404 NVLTDAMLNSVLKALISVGRMGECNKILKAMEEG--GFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMW 481 (671)
Q Consensus 404 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~ 481 (671)
.+.+......+++.+....+++++..++.+.... ....-..|..++|..|.+.|..+++++++..=...|+-||..|+
T Consensus 62 ~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~ 141 (429)
T PF10037_consen 62 KPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSF 141 (429)
T ss_pred CCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhH
Confidence 3334444444455444444455555554444432 11111122235555555555555555555555555555555555
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHH
Q 042546 482 VSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYC 525 (671)
Q Consensus 482 ~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~ 525 (671)
|.+|+.+.+.|++..|.++...|.. .+...+..|+..-+.+|.
T Consensus 142 n~Lmd~fl~~~~~~~A~~V~~~~~l-Qe~~~~~~t~~L~l~~~~ 184 (429)
T PF10037_consen 142 NLLMDHFLKKGNYKSAAKVATEMML-QEEFDNPSTQALALYSCY 184 (429)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHH-hhccCCchHHHHHHHHHH
Confidence 5555555555555555555555444 344344444444443333
No 131
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=97.73 E-value=0.0077 Score=55.31 Aligned_cols=126 Identities=17% Similarity=0.087 Sum_probs=59.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhc
Q 042546 448 KIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSK 527 (671)
Q Consensus 448 ~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~ 527 (671)
-+-..+-..|+-+.+..+........ ..|....+..+....+.|++..|...+++... .-++|...|+.+--+|.+.
T Consensus 71 ~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 71 KLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhHHHHHHHHc
Confidence 33444444555555554444433221 22333344455555555555555555555543 3344555555555555555
Q ss_pred CCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 042546 528 NRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKD 578 (671)
Q Consensus 528 g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 578 (671)
|+.++|..-|.+..+-.+- +...++-|.-.|.-.|+.+.|..++.....
T Consensus 148 Gr~~~Ar~ay~qAl~L~~~--~p~~~nNlgms~~L~gd~~~A~~lll~a~l 196 (257)
T COG5010 148 GRFDEARRAYRQALELAPN--EPSIANNLGMSLLLRGDLEDAETLLLPAYL 196 (257)
T ss_pred cChhHHHHHHHHHHHhccC--CchhhhhHHHHHHHcCCHHHHHHHHHHHHh
Confidence 5555555555555432111 222334444444445555555555555543
No 132
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=97.72 E-value=0.014 Score=53.63 Aligned_cols=159 Identities=13% Similarity=0.050 Sum_probs=108.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 042546 412 NSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVA 491 (671)
Q Consensus 412 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 491 (671)
.-+-..+...|+-+....+........ +.|....+..+....+.|++..|...|++..... ++|..+|+.+--+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHc
Confidence 334455566677666666666544221 3455556667777888888888888888877654 67778888888888888
Q ss_pred CCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 042546 492 GDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALS 571 (671)
Q Consensus 492 g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 571 (671)
|+.+.|..-|.+..+..+-. ...++.|.-.|.-.|+.+.|..++...... -.-|...-.-+.-.....|++++|..
T Consensus 148 Gr~~~Ar~ay~qAl~L~~~~--p~~~nNlgms~~L~gd~~~A~~lll~a~l~--~~ad~~v~~NLAl~~~~~g~~~~A~~ 223 (257)
T COG5010 148 GRFDEARRAYRQALELAPNE--PSIANNLGMSLLLRGDLEDAETLLLPAYLS--PAADSRVRQNLALVVGLQGDFREAED 223 (257)
T ss_pred cChhHHHHHHHHHHHhccCC--chhhhhHHHHHHHcCCHHHHHHHHHHHHhC--CCCchHHHHHHHHHHhhcCChHHHHh
Confidence 88888888888887632322 234555666666778888888888877642 23355566666667777888888887
Q ss_pred HHHHH
Q 042546 572 LLCLM 576 (671)
Q Consensus 572 l~~~m 576 (671)
+...-
T Consensus 224 i~~~e 228 (257)
T COG5010 224 IAVQE 228 (257)
T ss_pred hcccc
Confidence 76543
No 133
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.69 E-value=0.042 Score=50.64 Aligned_cols=116 Identities=15% Similarity=0.073 Sum_probs=54.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----c
Q 042546 416 KALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCV----A 491 (671)
Q Consensus 416 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~----~ 491 (671)
..|++.|++++|++...... ....... =+..+.+..+.+-|.+.+++|.+. -+..|.+-|..++.+ .
T Consensus 116 ~i~~~~~~~deAl~~~~~~~----~lE~~Al--~VqI~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~la~gg 186 (299)
T KOG3081|consen 116 IIYMHDGDFDEALKALHLGE----NLEAAAL--NVQILLKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKLATGG 186 (299)
T ss_pred HHhhcCCChHHHHHHHhccc----hHHHHHH--HHHHHHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHHhccc
Confidence 34555555555555554411 1122222 122334455555555555555542 233444444444332 2
Q ss_pred CCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 042546 492 GDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVR 542 (671)
Q Consensus 492 g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 542 (671)
+.+.+|.-+|++|-+ ...|+..+.+-...++...|++++|..++++...
T Consensus 187 ek~qdAfyifeE~s~--k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~ 235 (299)
T KOG3081|consen 187 EKIQDAFYIFEELSE--KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALD 235 (299)
T ss_pred hhhhhHHHHHHHHhc--ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHh
Confidence 345555555555532 2445555555555555555555555555555544
No 134
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=97.69 E-value=0.054 Score=51.68 Aligned_cols=201 Identities=12% Similarity=0.078 Sum_probs=128.3
Q ss_pred CChHHHHHHHHHHHHcCCCCCCHHHHHHH---HHHHHccCChHHHHHHHHHHHHcCCCCCHHHHH-HHHHHHHhCCChHH
Q 042546 279 DEPKKALIFFRWAEESGFVKHDESSYNAM---ASVLGREDCIDRFWKVLDEMRSKGYEMEMETCV-KVLGRFSERNMVKE 354 (671)
Q Consensus 279 ~~~~~A~~~f~~~~~~~~~~~~~~~~~~l---i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~-~li~~~~~~g~~~~ 354 (671)
|.+.+|+.-|.... .-|...|-++ ...|...|+..-|+.=|....+. +||-..-. .--..+.+.|.++.
T Consensus 52 ~Q~sDALt~yHaAv-----e~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~vllK~Gele~ 124 (504)
T KOG0624|consen 52 GQLSDALTHYHAAV-----EGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVVLLKQGELEQ 124 (504)
T ss_pred hhHHHHHHHHHHHH-----cCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchhhhhcccHHH
Confidence 78888998888776 3344444444 46788888888888888887765 67743322 12344678999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 042546 355 AVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAM 434 (671)
Q Consensus 355 a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 434 (671)
|..=|+..+.+. |+.-+ ...+..+.. .+.+. ......+..+...|+...|+.....+
T Consensus 125 A~~DF~~vl~~~--~s~~~---~~eaqskl~-----~~~e~-------------~~l~~ql~s~~~~GD~~~ai~~i~~l 181 (504)
T KOG0624|consen 125 AEADFDQVLQHE--PSNGL---VLEAQSKLA-----LIQEH-------------WVLVQQLKSASGSGDCQNAIEMITHL 181 (504)
T ss_pred HHHHHHHHHhcC--CCcch---hHHHHHHHH-----hHHHH-------------HHHHHHHHHHhcCCchhhHHHHHHHH
Confidence 999999998753 32211 111111100 00010 11234455566678888888888887
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCH
Q 042546 435 EEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAG 514 (671)
Q Consensus 435 ~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~ 514 (671)
.+.. +-|...|..-..+|...|.+..|+.=+....+.. .-++.++--+-..+...|+.+.++...++..+ +.||.
T Consensus 182 lEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK---ldpdH 256 (504)
T KOG0624|consen 182 LEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLK---LDPDH 256 (504)
T ss_pred HhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc---cCcch
Confidence 7653 3456666777788888888888887666655433 33455555566667778888888877777755 55664
No 135
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.69 E-value=0.00075 Score=68.15 Aligned_cols=132 Identities=13% Similarity=0.081 Sum_probs=102.3
Q ss_pred HHHHHH---hCCCCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 042546 358 LYEFAM---ACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFREN--GNVLTDAMLNSVLKALISVGRMGECNKILK 432 (671)
Q Consensus 358 l~~~m~---~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 432 (671)
++..|. ..+...+......+++.+.... +.+.+..++..++.. ....-..|..++|..|.+.|..+++..+++
T Consensus 50 ~~~~l~~k~~~~~~vS~~dld~fvn~~~~~~--~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~ 127 (429)
T PF10037_consen 50 LYSELDKKFERKKPVSSLDLDIFVNNVESKD--DLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLK 127 (429)
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHhhcCCHh--HHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHh
Confidence 555554 3344556666666666654333 355677777777765 333334566799999999999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 042546 433 AMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVA 491 (671)
Q Consensus 433 ~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 491 (671)
.=...|+-||..++|.||+.+.+.|++..|.++..+|...+...+..|+.-.+.+|.+-
T Consensus 128 n~~~yGiF~D~~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 128 NRLQYGIFPDNFSFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred ChhhcccCCChhhHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999998877777888888777777666
No 136
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.67 E-value=0.00067 Score=53.38 Aligned_cols=80 Identities=14% Similarity=0.176 Sum_probs=61.9
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhCC--------ChHHHHHHHHHHHhCCCCCCHHHHH
Q 042546 305 NAMASVLGREDCIDRFWKVLDEMRSKGY-EMEMETCVKVLGRFSERN--------MVKEAVDLYEFAMACKNKPSVNCCT 375 (671)
Q Consensus 305 ~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t~~~li~~~~~~g--------~~~~a~~l~~~m~~~g~~p~~~~~~ 375 (671)
...|.-+...+++...-.+|+.+++.|+ .|+..+|+.++.+.++.. ++-+.+.+|+.|...+++|+..||+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 3455666666888888999999999998 889999999888877653 3456677888888888888888888
Q ss_pred HHHHHHHhc
Q 042546 376 FLLRKIVVS 384 (671)
Q Consensus 376 ~ll~~~~~~ 384 (671)
.++..+.++
T Consensus 109 ivl~~Llkg 117 (120)
T PF08579_consen 109 IVLGSLLKG 117 (120)
T ss_pred HHHHHHHHh
Confidence 887776543
No 137
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.66 E-value=0.034 Score=61.73 Aligned_cols=235 Identities=11% Similarity=0.012 Sum_probs=136.4
Q ss_pred CCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCCHHHHHHHH-HHHHHcCChhHHHHHHHHHHcCCCCChHHHHHHH
Q 042546 162 LSSKTYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRNKMT-EKFEKEGLESDLEKLKGIFATGSIDNSIEKVASR 240 (671)
Q Consensus 162 ~~~~~~n~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (671)
.+...|-.||..+-..+++++|.++.++-.+. .|+...+--.. ..+.+.+...++..+ .+.+......
T Consensus 29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv-~~l~~~~~~~-------- 97 (906)
T PRK14720 29 SKFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL-NLIDSFSQNL-------- 97 (906)
T ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh-hhhhhccccc--------
Confidence 46788999999999999999999999966554 44443332222 155566655555443 2222222111
Q ss_pred HHHHHhcCCChhHHHHHHhhcccccChHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHccCChHHH
Q 042546 241 ICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRF 320 (671)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 320 (671)
++.....+...|.. ..-+...+-++..+|-+.|+.++|
T Consensus 98 ---------------------------------------~~~~ve~~~~~i~~---~~~~k~Al~~LA~~Ydk~g~~~ka 135 (906)
T PRK14720 98 ---------------------------------------KWAIVEHICDKILL---YGENKLALRTLAEAYAKLNENKKL 135 (906)
T ss_pred ---------------------------------------chhHHHHHHHHHHh---hhhhhHHHHHHHHHHHHcCChHHH
Confidence 11111112222221 122334555566666666666666
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHH---HHHhcCcccHHHHHHHHH
Q 042546 321 WKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLR---KIVVSKQLDMRLFSKVVR 397 (671)
Q Consensus 321 ~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~---~~~~~~~~~~~~~~~~~~ 397 (671)
..+++++.+.. +-|..+.|.+...|+.. ++++|++++.+....-+ +..-|+.+.. -++.....+.+.+.++.+
T Consensus 136 ~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i--~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ 211 (906)
T PRK14720 136 KGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRFI--KKKQYVGIEEIWSKLVHYNSDDFDFFLRIER 211 (906)
T ss_pred HHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHH--hhhcchHHHHHHHHHHhcCcccchHHHHHHH
Confidence 66666666654 22566666666666666 66666666666554311 1112222222 222333334455556666
Q ss_pred HHHHc-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 042546 398 VFREN-GNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLS 454 (671)
Q Consensus 398 ~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~ 454 (671)
.+... +...-..++-.+-..|-+.++++++..+++.+.+.. +.|.....-++..|.
T Consensus 212 ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~-~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 212 KVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHD-NKNNKAREELIRFYK 268 (906)
T ss_pred HHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcC-CcchhhHHHHHHHHH
Confidence 66554 444455677778888999999999999999999865 456667777777776
No 138
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=97.66 E-value=0.0035 Score=54.08 Aligned_cols=100 Identities=5% Similarity=-0.077 Sum_probs=70.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHH
Q 042546 446 KSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYC 525 (671)
Q Consensus 446 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~ 525 (671)
+..+...+.+.|++++|...|+...... +.+...|..+...+...|++++|...|+...+ . -+.+...+..+..++.
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~-l-~p~~~~a~~~lg~~l~ 103 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALM-L-DASHPEPVYQTGVCLK 103 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-c-CCCCcHHHHHHHHHHH
Confidence 4456667777888888888888877654 34666777777778888888888888888776 2 2235566677777777
Q ss_pred hcCCHHHHHHHHHHHHHhCCCCCCHH
Q 042546 526 SKNRAIDACKFVHNCVREYDLKPWHT 551 (671)
Q Consensus 526 ~~g~~~~A~~~~~~m~~~~~~~p~~~ 551 (671)
..|+.++|...|+.... ..|+..
T Consensus 104 ~~g~~~eAi~~~~~Al~---~~p~~~ 126 (144)
T PRK15359 104 MMGEPGLAREAFQTAIK---MSYADA 126 (144)
T ss_pred HcCCHHHHHHHHHHHHH---hCCCCh
Confidence 78888888888887765 345443
No 139
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.65 E-value=0.0019 Score=65.06 Aligned_cols=125 Identities=15% Similarity=0.097 Sum_probs=92.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 042546 409 AMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGH 488 (671)
Q Consensus 409 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~ 488 (671)
....+++..+...++++.|..+|+++.+.. |+ ....++..+...++-.+|.+++++..+.. +-|......-...|
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fL 244 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFL 244 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 345566667777888889999999888654 44 34457777777888888888888887653 33556666666777
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 042546 489 CVAGDLDKAADCFQKMVEKEGTSHA-GYAIDLLVNTYCSKNRAIDACKFVHNCV 541 (671)
Q Consensus 489 ~~~g~~~~a~~~~~~m~~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~ 541 (671)
.+.++.+.|+++.+++.+ ..|+ ..+|..|..+|.+.|++++|...++.++
T Consensus 245 l~k~~~~lAL~iAk~av~---lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 245 LSKKKYELALEIAKKAVE---LSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HhcCCHHHHHHHHHHHHH---hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 888888888888888866 4454 4478888888888888888888888775
No 140
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.62 E-value=0.0013 Score=58.61 Aligned_cols=98 Identities=17% Similarity=0.214 Sum_probs=68.4
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHHHcc-----CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCC---------
Q 042546 285 LIFFRWAEESGFVKHDESSYNAMASVLGRE-----DCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERN--------- 350 (671)
Q Consensus 285 ~~~f~~~~~~~~~~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g--------- 350 (671)
...|+... +-..|..+|..+|+.|.+. |..+-....+..|.+.|+.-|..+|+.||+.+=+..
T Consensus 34 ~~~f~~~~---~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~ 110 (228)
T PF06239_consen 34 EELFERAP---GQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQA 110 (228)
T ss_pred HHHHHHHh---hccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHH
Confidence 34555543 2278899999999999755 778888889999999999999999999999876532
Q ss_pred -------ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 042546 351 -------MVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSK 385 (671)
Q Consensus 351 -------~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~ 385 (671)
+.+-|++++++|...|+.||..|+..+++.+++.+
T Consensus 111 ~F~hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s 152 (228)
T PF06239_consen 111 EFMHYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKS 152 (228)
T ss_pred HhccCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcccc
Confidence 22445555555555555555555555555554444
No 141
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.62 E-value=0.0015 Score=51.53 Aligned_cols=79 Identities=8% Similarity=0.111 Sum_probs=52.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcC--------CHHHHHHHHHHHHHCCCCCCHHHHH
Q 042546 412 NSVLKALISVGRMGECNKILKAMEEGGF-IASSNMKSKIAFRLSSAG--------KKDEANEFMDHMEASGSDVGDKMWV 482 (671)
Q Consensus 412 ~~li~~~~~~g~~~~A~~~~~~m~~~g~-~~~~~~~~~li~~~~~~g--------~~~~A~~~~~~m~~~g~~~~~~~~~ 482 (671)
...|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. ++-+.+.+++.|...+++|+..||+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 4445555566888888888888888887 788888888887776543 2334556666666666666666666
Q ss_pred HHHHHHHh
Q 042546 483 SLIKGHCV 490 (671)
Q Consensus 483 ~li~~~~~ 490 (671)
.++..+.+
T Consensus 109 ivl~~Llk 116 (120)
T PF08579_consen 109 IVLGSLLK 116 (120)
T ss_pred HHHHHHHH
Confidence 66665543
No 142
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=97.62 E-value=0.04 Score=60.37 Aligned_cols=183 Identities=11% Similarity=0.064 Sum_probs=129.6
Q ss_pred CCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCCCC-HHH
Q 042546 332 YEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLT-DAM 410 (671)
Q Consensus 332 ~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 410 (671)
...+...+-.|.....+.|.+++|..+++...+ ..|| ...
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~---------------------------------------~~Pd~~~a 122 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQ---------------------------------------RFPDSSEA 122 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHh---------------------------------------hCCCcHHH
Confidence 344677888888888888999999988888764 3344 446
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 042546 411 LNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCV 490 (671)
Q Consensus 411 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~ 490 (671)
...+...+.+.+++++|....++..+.. +-+....+.+..++.+.|++++|..+|++....+ .-+..++..+-.++-.
T Consensus 123 ~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~ 200 (694)
T PRK15179 123 FILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILLEAKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTR 200 (694)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHH
Confidence 7778888899999999999999988775 4556677788888889999999999999998743 2347788888889999
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh---CCCCCCHHHHHHHHHHHHhc
Q 042546 491 AGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVRE---YDLKPWHTTYEELIKNLLVQ 563 (671)
Q Consensus 491 ~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~~p~~~~~~~li~~~~~~ 563 (671)
.|+.++|...|+...+ ...|...-|+-.+ +++..-..+++++..+ -|....+.....+|.-|.+.
T Consensus 201 ~G~~~~A~~~~~~a~~--~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (694)
T PRK15179 201 RGALWRARDVLQAGLD--AIGDGARKLTRRL------VDLNADLAALRRLGVEGDGRDVPVSILVLEKMLQEIGRR 268 (694)
T ss_pred cCCHHHHHHHHHHHHH--hhCcchHHHHHHH------HHHHHHHHHHHHcCcccccCCCceeeeeHHHHHHHHhhc
Confidence 9999999999999886 3344445555443 2333334455554322 12233344555566556553
No 143
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.61 E-value=0.002 Score=57.55 Aligned_cols=100 Identities=11% Similarity=0.092 Sum_probs=53.9
Q ss_pred CCHHHHHHHHHHHHh-----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc----------------CCHHHHHH
Q 042546 441 ASSNMKSKIAFRLSS-----AGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVA----------------GDLDKAAD 499 (671)
Q Consensus 441 ~~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~----------------g~~~~a~~ 499 (671)
.|-.+|..++..|.+ .|.++=....+..|.+.|+..|..+|+.||+.+=+. .+-+-|.+
T Consensus 45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~ 124 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAID 124 (228)
T ss_pred ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHH
Confidence 444445555554443 244555555555555555555555555555544332 23455666
Q ss_pred HHHHHHHcCCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHH
Q 042546 500 CFQKMVEKEGTSHAGYAIDLLVNTYCSKNR-AIDACKFVHNCV 541 (671)
Q Consensus 500 ~~~~m~~~~g~~p~~~~~~~li~~~~~~g~-~~~A~~~~~~m~ 541 (671)
++++|.. .|+-||..|+..|++.+++.+. +....++.--|.
T Consensus 125 lL~qME~-~gV~Pd~Et~~~ll~iFG~~s~p~~K~~rmmYWmp 166 (228)
T PF06239_consen 125 LLEQMEN-NGVMPDKETEQMLLNIFGRKSHPMKKYRRMMYWMP 166 (228)
T ss_pred HHHHHHH-cCCCCcHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 7777776 6777777777777776665544 223333433343
No 144
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.57 E-value=0.0044 Score=52.96 Aligned_cols=92 Identities=14% Similarity=0.185 Sum_probs=41.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHh
Q 042546 447 SKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCS 526 (671)
Q Consensus 447 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~ 526 (671)
..+...+.+.|++++|.+.|+.....+ ..+...|..+...+.+.|++++|...++...+ .. +.+...+..+-..|..
T Consensus 21 ~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~-~~-p~~~~~~~~la~~~~~ 97 (135)
T TIGR02552 21 YALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAA-LD-PDDPRPYFHAAECLLA 97 (135)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cC-CCChHHHHHHHHHHHH
Confidence 334444444555555555555544432 22334444444444455555555555554443 21 2223334444444445
Q ss_pred cCCHHHHHHHHHHHH
Q 042546 527 KNRAIDACKFVHNCV 541 (671)
Q Consensus 527 ~g~~~~A~~~~~~m~ 541 (671)
.|+.++|...|+...
T Consensus 98 ~g~~~~A~~~~~~al 112 (135)
T TIGR02552 98 LGEPESALKALDLAI 112 (135)
T ss_pred cCCHHHHHHHHHHHH
Confidence 555555555554444
No 145
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.56 E-value=0.0032 Score=53.84 Aligned_cols=105 Identities=12% Similarity=0.060 Sum_probs=86.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 042546 409 AMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGH 488 (671)
Q Consensus 409 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~ 488 (671)
.....+...+.+.|++++|.+.|+.....+ +.+...|..+...|.+.|++++|...++...+.+ +.+...+..+...+
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~ 95 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECL 95 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHH
Confidence 345667778889999999999999998765 5678889999999999999999999999988765 44667777788899
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCCHHHHH
Q 042546 489 CVAGDLDKAADCFQKMVEKEGTSHAGYAID 518 (671)
Q Consensus 489 ~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~ 518 (671)
...|+.++|.+.|+...+ ..|+...+.
T Consensus 96 ~~~g~~~~A~~~~~~al~---~~p~~~~~~ 122 (135)
T TIGR02552 96 LALGEPESALKALDLAIE---ICGENPEYS 122 (135)
T ss_pred HHcCCHHHHHHHHHHHHH---hccccchHH
Confidence 999999999999999877 345544433
No 146
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.55 E-value=0.0084 Score=54.63 Aligned_cols=184 Identities=11% Similarity=0.043 Sum_probs=104.9
Q ss_pred cCCHHHHHHHHHHHHH---CC-CCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCH
Q 042546 456 AGKKDEANEFMDHMEA---SG-SDVGDKM-WVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRA 530 (671)
Q Consensus 456 ~g~~~~A~~~~~~m~~---~g-~~~~~~~-~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~ 530 (671)
..+.++..+++.++.. .| ..++..+ |.-++-+....|+.+.|...++.+..+..-.+-+.-..++ -+-..|++
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam--~lEa~~~~ 102 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAM--LLEATGNY 102 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHH--HHHHhhch
Confidence 4566777777776642 33 3444433 4555556666677777777777766522111112111111 12335777
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH---HHHHHhcCChHHHHHHHHH
Q 042546 531 IDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPF---IKYVSKSGTSDDAIAFLKG 607 (671)
Q Consensus 531 ~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~t~---~~~l~~~g~~~~A~~~~~~ 607 (671)
++|.++++.+.++ -+.|.++|--=+...-..|+--+|++-+.+..+. +..|...+ ...|...|+++.|.-.+++
T Consensus 103 ~~A~e~y~~lL~d--dpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE 179 (289)
T KOG3060|consen 103 KEAIEYYESLLED--DPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEE 179 (289)
T ss_pred hhHHHHHHHHhcc--CcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHH
Confidence 7777777777653 2445556655454455556556666666655543 44455544 4556667777777777777
Q ss_pred hhhCCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHhchH
Q 042546 608 MTSKRFPSMSVVLCLFAAFFQARR---HSEAQDLLSKCPR 644 (671)
Q Consensus 608 m~~~~~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~m~~ 644 (671)
+.-..|.+...+..+.+.+.-.|- .+-|.+++.+..+
T Consensus 180 ~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alk 219 (289)
T KOG3060|consen 180 LLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALK 219 (289)
T ss_pred HHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 776666666666666666655443 3446666665544
No 147
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.48 E-value=0.011 Score=51.23 Aligned_cols=124 Identities=19% Similarity=0.182 Sum_probs=62.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHH
Q 042546 411 LNSVLKALISVGRMGECNKILKAMEEGGFIAS---SNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGD--KMWVSLI 485 (671)
Q Consensus 411 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~--~~~~~li 485 (671)
|..++..+ ..++...+...++.+.+.. +.+ ....-.+...+...|++++|...|+........|+. ...-.+.
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA 92 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLA 92 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence 44444444 3566666666666666542 112 122223345555666666666666666655422211 1233344
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 042546 486 KGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHN 539 (671)
Q Consensus 486 ~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 539 (671)
..+...|++++|+..++.... ... ....+...-+.|.+.|+.++|...|+.
T Consensus 93 ~~~~~~~~~d~Al~~L~~~~~-~~~--~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 93 RILLQQGQYDEALATLQQIPD-EAF--KALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHcCCHHHHHHHHHhccC-cch--HHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 555566666666666654322 222 233444455556666666666666543
No 148
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=97.34 E-value=0.23 Score=54.46 Aligned_cols=216 Identities=9% Similarity=-0.019 Sum_probs=153.6
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 042546 422 GRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCF 501 (671)
Q Consensus 422 g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~ 501 (671)
.+...|...|-+..+.. +-=...|..|-..|+...+...|.+.|+...+.. ..|...+....+.|+...+++.|..+.
T Consensus 472 K~~~~al~ali~alrld-~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~ 549 (1238)
T KOG1127|consen 472 KNSALALHALIRALRLD-VSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEIC 549 (1238)
T ss_pred hhHHHHHHHHHHHHhcc-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHH
Confidence 34667777766666443 1224678889999998889999999999987654 346677889999999999999999984
Q ss_pred HHHHHcCCCCCCHHHHHHHH--HHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 042546 502 QKMVEKEGTSHAGYAIDLLV--NTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDH 579 (671)
Q Consensus 502 ~~m~~~~g~~p~~~~~~~li--~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 579 (671)
-...++.. .-...++.+- -.|.+.++...|..-|+...+ --+-|...|..+..+|.+.|++..|+++|.+...
T Consensus 550 l~~~qka~--a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR--~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~- 624 (1238)
T KOG1127|consen 550 LRAAQKAP--AFACKENWVQRGPYYLEAHNLHGAVCEFQSALR--TDPKDYNLWLGLGEAYPESGRYSHALKVFTKASL- 624 (1238)
T ss_pred HHHhhhch--HHHHHhhhhhccccccCccchhhHHHHHHHHhc--CCchhHHHHHHHHHHHHhcCceehHHHhhhhhHh-
Confidence 33332111 1122233333 346778899999999988865 2334677999999999999999999999988875
Q ss_pred CCCCCHH--HH--HHHHHhcCChHHHHHHHHHhhhCC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHhchHh
Q 042546 580 GFPPFVD--PF--IKYVSKSGTSDDAIAFLKGMTSKR-------FPSMSVVLCLFAAFFQARRHSEAQDLLSKCPRY 645 (671)
Q Consensus 580 ~~~p~~~--t~--~~~l~~~g~~~~A~~~~~~m~~~~-------~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 645 (671)
+.|+.. .| ....|..|.+++|...+..++... .--..++..+...+.-.|-..+|..++++-.++
T Consensus 625 -LrP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~ 700 (1238)
T KOG1127|consen 625 -LRPLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIES 700 (1238)
T ss_pred -cCcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 466642 22 334478999999999988876521 123456666667777778888888888775543
No 149
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.31 E-value=0.0012 Score=48.50 Aligned_cols=65 Identities=22% Similarity=0.289 Sum_probs=54.5
Q ss_pred HhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhchHhhhccHHHHHHHH
Q 042546 593 SKSGTSDDAIAFLKGMTSKRFPSMSVVLCLFAAFFQARRHSEAQDLLSKCPRYVRNHADVLNLLY 657 (671)
Q Consensus 593 ~~~g~~~~A~~~~~~m~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~l~~ 657 (671)
.+.|++++|++.|+.+....|.+...+..+..+|.+.|++++|.++++++....++.+....+..
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a 66 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLA 66 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHh
Confidence 35789999999999999888888999999999999999999999999999887777666665543
No 150
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=97.30 E-value=0.41 Score=52.54 Aligned_cols=442 Identities=12% Similarity=0.054 Sum_probs=231.4
Q ss_pred CCChHHHHHHHHHHhhcCCCCCC-HHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHH
Q 042546 141 ESSPDEARRFFNWVLEKESERLS-SKTYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRNKMTEKFEKEGLESDLE 219 (671)
Q Consensus 141 ~~~~~~A~~~f~~m~~~~~~~~~-~~~~n~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~~ 219 (671)
..+...|+..|-...+.. ++ ...|..|-..|+..-+...|...|+...+.. .-|........+.|++...++.|.
T Consensus 471 rK~~~~al~ali~alrld---~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~ 546 (1238)
T KOG1127|consen 471 RKNSALALHALIRALRLD---VSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAF 546 (1238)
T ss_pred hhhHHHHHHHHHHHHhcc---cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHH
Confidence 356778888877666511 22 4578889999988888888999999887653 236677888889999999888887
Q ss_pred HHHHHHHcCCCCChHHHHHHHHHHHHhcCCChhHHHHHHhhcccccChHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC
Q 042546 220 KLKGIFATGSIDNSIEKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKH 299 (671)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~ 299 (671)
.+.- ........ ......... .|+- ++. .++...|..-|+...+.. +.
T Consensus 547 ~I~l--~~~qka~a-----------------~~~k~nW~~-rG~y--------yLe--a~n~h~aV~~fQsALR~d--Pk 594 (1238)
T KOG1127|consen 547 EICL--RAAQKAPA-----------------FACKENWVQ-RGPY--------YLE--AHNLHGAVCEFQSALRTD--PK 594 (1238)
T ss_pred HHHH--HHhhhchH-----------------HHHHhhhhh-cccc--------ccC--ccchhhHHHHHHHHhcCC--ch
Confidence 6521 11111100 000000000 1110 111 167778888888776433 67
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHH--HHHHhCCChHHHHHHHHHHHhC------CCCCCH
Q 042546 300 DESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVL--GRFSERNMVKEAVDLYEFAMAC------KNKPSV 371 (671)
Q Consensus 300 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li--~~~~~~g~~~~a~~l~~~m~~~------g~~p~~ 371 (671)
|...|..+..+|..+|++..|.++|++.... .|+ .+|...- ..-+..|.+++|+..+...... +..--.
T Consensus 595 D~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--rP~-s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLa 671 (1238)
T KOG1127|consen 595 DYNLWLGLGEAYPESGRYSHALKVFTKASLL--RPL-SKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLA 671 (1238)
T ss_pred hHHHHHHHHHHHHhcCceehHHHhhhhhHhc--CcH-hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHH
Confidence 8999999999999999999999999988765 343 3343322 2345679999999999877632 000001
Q ss_pred HHHHHHHHHHHhcCcc--cHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC----CHHHHHHHHHHHHHCCCCCCHHH
Q 042546 372 NCCTFLLRKIVVSKQL--DMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVG----RMGECNKILKAMEEGGFIASSNM 445 (671)
Q Consensus 372 ~~~~~ll~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g----~~~~A~~~~~~m~~~g~~~~~~~ 445 (671)
.++-.+...+.-.|-. ..+.+++-++. ..++++...+... -...|..+|-+.. .. .|+...
T Consensus 672 E~~ir~akd~~~~gf~~kavd~~eksie~-----------f~~~l~h~~~~~~~~Wi~asdac~~f~q~e-~~-~vn~h~ 738 (1238)
T KOG1127|consen 672 ESVIRDAKDSAITGFQKKAVDFFEKSIES-----------FIVSLIHSLQSDRLQWIVASDACYIFSQEE-PS-IVNMHY 738 (1238)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHH-----------HHHHHHHhhhhhHHHHHHHhHHHHHHHHhc-cc-chHHHH
Confidence 1111100000000000 00001110000 0111111111000 0123444444443 11 233222
Q ss_pred HHHHHHHHHhcCCH---H---HHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cC----CHHHHHHHHHHHHHcCCCC
Q 042546 446 KSKIAFRLSSAGKK---D---EANEFMDHMEASGSDVGDKMWVSLIKGHCV----AG----DLDKAADCFQKMVEKEGTS 511 (671)
Q Consensus 446 ~~~li~~~~~~g~~---~---~A~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g----~~~~a~~~~~~m~~~~g~~ 511 (671)
..++..-.-+.+.. | -|.+.+-.-.. ...+..+|-.++..|.+ .| +...|...+....+ . ..
T Consensus 739 l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hls--l~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~-L-~a 814 (1238)
T KOG1127|consen 739 LIILSKQLEKTGALKKNDLLFLGYECGIAHLS--LAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVS-L-CA 814 (1238)
T ss_pred HHHHHHHHHhcccCcchhHHHHHHHHhhHHHH--HhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHH-H-hh
Confidence 22222212222222 1 11111111111 12234444444443332 11 22345555555544 1 12
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH-HH-H
Q 042546 512 HAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVD-PF-I 589 (671)
Q Consensus 512 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~-t~-~ 589 (671)
-+..+|++|- ....-|.+.-|..-|-.-.. ..+....+|.-+--.+.+..+++-|...|...+. +.|+.. .+ .
T Consensus 815 nn~~~WnaLG-Vlsg~gnva~aQHCfIks~~--sep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qS--LdP~nl~~WlG 889 (1238)
T KOG1127|consen 815 NNEGLWNALG-VLSGIGNVACAQHCFIKSRF--SEPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQS--LDPLNLVQWLG 889 (1238)
T ss_pred ccHHHHHHHH-Hhhccchhhhhhhhhhhhhh--ccccchhheeccceeEEecccHHHhhHHHHhhhh--cCchhhHHHHH
Confidence 2444555443 33555777777766655432 3344556777777777888888888888888775 345432 22 2
Q ss_pred HHH--HhcCChHHHHHHHHH-----hhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhch
Q 042546 590 KYV--SKSGTSDDAIAFLKG-----MTSKRFPSMSVVLCLFAAFFQARRHSEAQDLLSKCP 643 (671)
Q Consensus 590 ~~l--~~~g~~~~A~~~~~~-----m~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 643 (671)
..+ ...|+.-++..+|.. +.++..++..-|-+........|+.++-..-.++++
T Consensus 890 ~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~ 950 (1238)
T KOG1127|consen 890 EALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKIS 950 (1238)
T ss_pred HHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhh
Confidence 333 356777777777765 222344677777776667777787776555544443
No 151
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.23 E-value=0.0058 Score=47.87 Aligned_cols=92 Identities=15% Similarity=0.107 Sum_probs=50.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 042546 412 NSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVA 491 (671)
Q Consensus 412 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 491 (671)
..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|.+.++...... ..+..++..+...+...
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 4 LNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHHH
Confidence 344445555666666666666665442 2233455555555666666666666666655443 22334455555555555
Q ss_pred CCHHHHHHHHHHHH
Q 042546 492 GDLDKAADCFQKMV 505 (671)
Q Consensus 492 g~~~~a~~~~~~m~ 505 (671)
|+.++|...+....
T Consensus 82 ~~~~~a~~~~~~~~ 95 (100)
T cd00189 82 GKYEEALEAYEKAL 95 (100)
T ss_pred HhHHHHHHHHHHHH
Confidence 66666665555543
No 152
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.20 E-value=0.0065 Score=59.15 Aligned_cols=129 Identities=7% Similarity=0.079 Sum_probs=59.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 042546 410 MLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFR-LSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGH 488 (671)
Q Consensus 410 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~-~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~ 488 (671)
+|..++...-+.+.++.|..+|.+..+.+ ..+...|-..... |...++.+.|.++|+...+. +..+...|..-++.+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 45555555555555666666666555332 1222333333333 22234444455555555443 233444555555555
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 042546 489 CVAGDLDKAADCFQKMVEKEGTSHAG---YAIDLLVNTYCSKNRAIDACKFVHNCVR 542 (671)
Q Consensus 489 ~~~g~~~~a~~~~~~m~~~~g~~p~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~ 542 (671)
.+.++.+.|..+|++... . +.++. ..|...++-=.+.|+++.+.++.+++.+
T Consensus 81 ~~~~d~~~aR~lfer~i~-~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 81 IKLNDINNARALFERAIS-S-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHTT-HHHHHHHHHHHCC-T-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHH-h-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 555555555555555544 1 22111 3455555554555555555555555543
No 153
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.17 E-value=0.01 Score=49.17 Aligned_cols=97 Identities=14% Similarity=0.030 Sum_probs=44.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH----H---HH
Q 042546 517 IDLLVNTYCSKNRAIDACKFVHNCVREYDLKP-WHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFV----D---PF 588 (671)
Q Consensus 517 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~----~---t~ 588 (671)
+..+...+.+.|++++|.+.|..+.....-.| ....+..+...+.+.|++++|.+.++.+.... |+. . ..
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~~ 82 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKY--PKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHC--CCCCcccHHHHHH
Confidence 34444555555666666666665554321111 12233445555555566666666655554321 111 0 11
Q ss_pred HHHHHhcCChHHHHHHHHHhhhCCCCC
Q 042546 589 IKYVSKSGTSDDAIAFLKGMTSKRFPS 615 (671)
Q Consensus 589 ~~~l~~~g~~~~A~~~~~~m~~~~~p~ 615 (671)
...+.+.|+.++|...++++....+.+
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~p~~ 109 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKRYPGS 109 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHCcCC
Confidence 233344555555555555555544333
No 154
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.13 E-value=0.0096 Score=57.94 Aligned_cols=131 Identities=8% Similarity=-0.009 Sum_probs=93.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 042546 444 NMKSKIAFRLSSAGKKDEANEFMDHMEASG-SDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVN 522 (671)
Q Consensus 444 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~ 522 (671)
.+|..++...-+.+..+.|.++|.+..+.+ +..++....+++. |...++.+.|.++|+...+. +..+...|..-++
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E-~~~~~d~~~A~~Ife~glk~--f~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALME-YYCNKDPKRARKIFERGLKK--FPSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHH-HHTCS-HHHHHHHHHHHHHH--HTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHH-HHhCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHH
Confidence 467888888888888999999999988543 2233333333433 33456777799999988873 4556677888888
Q ss_pred HHHhcCCHHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 042546 523 TYCSKNRAIDACKFVHNCVREYDLKPWH---TTYEELIKNLLVQRGFKDALSLLCLMKDH 579 (671)
Q Consensus 523 ~~~~~g~~~~A~~~~~~m~~~~~~~p~~---~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 579 (671)
.+.+.|+.+.|..+|++.... +.++. ..|...++-=.+.|+++.+.++.+++.+.
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~--l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISS--LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCT--SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHHhCcHHHHHHHHHHHHHh--cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 888889999999999988753 33332 48888888888889999998888888763
No 155
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.01 E-value=0.031 Score=46.29 Aligned_cols=96 Identities=13% Similarity=0.078 Sum_probs=49.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--CCHHHHHHHHH
Q 042546 411 LNSVLKALISVGRMGECNKILKAMEEGGF--IASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSD--VGDKMWVSLIK 486 (671)
Q Consensus 411 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--~~~~~~~~li~ 486 (671)
+..+...+.+.|++++|.+.|+.+.+..- ......+..+...+.+.|++++|.+.|+.+...... .....+..+..
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 34444555566666666666666654320 011234444555566666666666666665543211 11234444555
Q ss_pred HHHhcCCHHHHHHHHHHHHH
Q 042546 487 GHCVAGDLDKAADCFQKMVE 506 (671)
Q Consensus 487 ~~~~~g~~~~a~~~~~~m~~ 506 (671)
.+.+.|+.++|.+.++++.+
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~ 104 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIK 104 (119)
T ss_pred HHHHhCChHHHHHHHHHHHH
Confidence 55556666666666665554
No 156
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.98 E-value=0.014 Score=48.56 Aligned_cols=55 Identities=15% Similarity=0.149 Sum_probs=47.9
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 042546 508 EGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLV 562 (671)
Q Consensus 508 ~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~ 562 (671)
....|+..+..+++.+|+..|++..|.++.+...++++++-+..+|..|+.-...
T Consensus 46 spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v 100 (126)
T PF12921_consen 46 SPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYV 100 (126)
T ss_pred CCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 5667899999999999999999999999999999999988888999998875443
No 157
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.97 E-value=0.006 Score=57.19 Aligned_cols=87 Identities=16% Similarity=0.115 Sum_probs=60.2
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHH----HHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHH
Q 042546 560 LLVQRGFKDALSLLCLMKDHGFPPFVDPF----IKYVSKSGTSDDAIAFLKGMTSKRFPSMSVVLCLFAAFFQARRHSEA 635 (671)
Q Consensus 560 ~~~~g~~~~A~~l~~~m~~~~~~p~~~t~----~~~l~~~g~~~~A~~~~~~m~~~~~p~~~~~~~l~~~~~~~g~~~~A 635 (671)
..+.+++++|++.|.+.++ +.|...+| ..+|++.|.++.|++-.+..+.-++.....|..|..+|...|++++|
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~--l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIE--LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHhhhHHHHHHHHHHHHh--cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHH
Confidence 4456777777777777775 45655554 56677777777777777777766666667777777777777777777
Q ss_pred HHHHHhchHhhhc
Q 042546 636 QDLLSKCPRYVRN 648 (671)
Q Consensus 636 ~~~~~~m~~~~~~ 648 (671)
.+.|++..+--+.
T Consensus 169 ~~aykKaLeldP~ 181 (304)
T KOG0553|consen 169 IEAYKKALELDPD 181 (304)
T ss_pred HHHHHhhhccCCC
Confidence 7777775543333
No 158
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=96.93 E-value=0.016 Score=45.31 Aligned_cols=90 Identities=16% Similarity=0.136 Sum_probs=42.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhc
Q 042546 448 KIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSK 527 (671)
Q Consensus 448 ~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~ 527 (671)
.+...+...|++++|...+++..+.. +.+...+..+...+...+++++|.+.++...+ .. ..+..++..+...+...
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 5 NLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALE-LD-PDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CC-CcchhHHHHHHHHHHHH
Confidence 34444555555555555555554432 12223444445555555555555555555443 21 11223444444445555
Q ss_pred CCHHHHHHHHHHH
Q 042546 528 NRAIDACKFVHNC 540 (671)
Q Consensus 528 g~~~~A~~~~~~m 540 (671)
|+.++|...+...
T Consensus 82 ~~~~~a~~~~~~~ 94 (100)
T cd00189 82 GKYEEALEAYEKA 94 (100)
T ss_pred HhHHHHHHHHHHH
Confidence 5555555555444
No 159
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.90 E-value=0.34 Score=44.58 Aligned_cols=83 Identities=13% Similarity=0.216 Sum_probs=39.9
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 042546 491 AGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDAL 570 (671)
Q Consensus 491 ~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 570 (671)
.|.+++|.++++...+ .. +.|.+++--=+...-..|+--+|.+-+....++ +.-|...|.-+-..|...|++++|.
T Consensus 99 ~~~~~~A~e~y~~lL~-dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~--F~~D~EAW~eLaeiY~~~~~f~kA~ 174 (289)
T KOG3060|consen 99 TGNYKEAIEYYESLLE-DD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK--FMNDQEAWHELAEIYLSEGDFEKAA 174 (289)
T ss_pred hhchhhHHHHHHHHhc-cC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH--hcCcHHHHHHHHHHHHhHhHHHHHH
Confidence 3455555555555544 22 233344433333333344444555555544442 3445555555555555555555555
Q ss_pred HHHHHHH
Q 042546 571 SLLCLMK 577 (671)
Q Consensus 571 ~l~~~m~ 577 (671)
-.++++.
T Consensus 175 fClEE~l 181 (289)
T KOG3060|consen 175 FCLEELL 181 (289)
T ss_pred HHHHHHH
Confidence 5555554
No 160
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.89 E-value=0.17 Score=52.46 Aligned_cols=77 Identities=12% Similarity=0.114 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHH
Q 042546 514 GYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFV-DPFIKYV 592 (671)
Q Consensus 514 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~-~t~~~~l 592 (671)
..+.-.+..-+.+...+.-|-++|..|-.. .++++.....++|++|..+-++..+ +.||. ..+...+
T Consensus 747 re~l~~~a~ylk~l~~~gLAaeIF~k~gD~----------ksiVqlHve~~~W~eAFalAe~hPe--~~~dVy~pyaqwL 814 (1081)
T KOG1538|consen 747 REPLLLCATYLKKLDSPGLAAEIFLKMGDL----------KSLVQLHVETQRWDEAFALAEKHPE--FKDDVYMPYAQWL 814 (1081)
T ss_pred hhHHHHHHHHHhhccccchHHHHHHHhccH----------HHHhhheeecccchHhHhhhhhCcc--ccccccchHHHHh
Confidence 334444444455566777788888887532 2466777788888888888887664 34554 2233444
Q ss_pred HhcCChHHHH
Q 042546 593 SKSGTSDDAI 602 (671)
Q Consensus 593 ~~~g~~~~A~ 602 (671)
+...+++||.
T Consensus 815 AE~DrFeEAq 824 (1081)
T KOG1538|consen 815 AENDRFEEAQ 824 (1081)
T ss_pred hhhhhHHHHH
Confidence 4444444433
No 161
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=96.78 E-value=0.79 Score=46.96 Aligned_cols=205 Identities=13% Similarity=0.068 Sum_probs=134.0
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 042546 425 GECNKILKAMEEGGFIASSNMKSKIAFRLSSAG---KKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCF 501 (671)
Q Consensus 425 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~ 501 (671)
+++..+++.....-...+..+|..+.+-=-..- ..+.....++++...-..--..+|...|..-.+..-++.|..+|
T Consensus 310 ~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF 389 (656)
T KOG1914|consen 310 DEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIF 389 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHH
Confidence 455555555443222233334443332211111 25555666666654332223456888888888889999999999
Q ss_pred HHHHHcCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 042546 502 QKMVEKEGTSH-AGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHG 580 (671)
Q Consensus 502 ~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~ 580 (671)
.+.++ .+..+ ++.++++++.-|| .++.+-|.++|+--.+++|-.| .--...++-+.+.++-..|..+|++....+
T Consensus 390 ~kaR~-~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkkf~d~p--~yv~~YldfL~~lNdd~N~R~LFEr~l~s~ 465 (656)
T KOG1914|consen 390 KKARE-DKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKKFGDSP--EYVLKYLDFLSHLNDDNNARALFERVLTSV 465 (656)
T ss_pred HHHhh-ccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHhcCCCh--HHHHHHHHHHHHhCcchhHHHHHHHHHhcc
Confidence 99999 77776 8889999999887 4888999999998877665433 333567777888898899999999999887
Q ss_pred CCCCHH--HH---HHHHHhcCChHHHHHHHHHhhhCCC----CCHHHHHHHHHHHHHcCCHH
Q 042546 581 FPPFVD--PF---IKYVSKSGTSDDAIAFLKGMTSKRF----PSMSVVLCLFAAFFQARRHS 633 (671)
Q Consensus 581 ~~p~~~--t~---~~~l~~~g~~~~A~~~~~~m~~~~~----p~~~~~~~l~~~~~~~g~~~ 633 (671)
+.|+.. .+ +..=+..|++..+.++-+++....+ +...+-..+++-|.-.+.+.
T Consensus 466 l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~~ 527 (656)
T KOG1914|consen 466 LSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDRYGILDLYP 527 (656)
T ss_pred CChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhccccc
Confidence 777753 23 4444788999988888777665332 11122334455555555443
No 162
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.78 E-value=0.64 Score=45.92 Aligned_cols=108 Identities=14% Similarity=0.044 Sum_probs=67.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 042546 480 MWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKN 559 (671)
Q Consensus 480 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~ 559 (671)
+.+..|.-+...|+...|.++-.+ ..+ ||..-|...|.+|+..+++++-.++-.. ++ .++-|-.++.+
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~----Fkv-~dkrfw~lki~aLa~~~~w~eL~~fa~s--kK-----sPIGyepFv~~ 246 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKE----FKV-PDKRFWWLKIKALAENKDWDELEKFAKS--KK-----SPIGYEPFVEA 246 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHH----cCC-cHHHHHHHHHHHHHhcCCHHHHHHHHhC--CC-----CCCChHHHHHH
Confidence 344455566667776666655433 333 6777777777777777777776654332 11 23566677777
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHhcCChHHHHHHHH
Q 042546 560 LLVQRGFKDALSLLCLMKDHGFPPFVDPFIKYVSKSGTSDDAIAFLK 606 (671)
Q Consensus 560 ~~~~g~~~~A~~l~~~m~~~~~~p~~~t~~~~l~~~g~~~~A~~~~~ 606 (671)
|.+.|+..+|.....+ -|+ ..-+..|.++|++.+|.+.-.
T Consensus 247 ~~~~~~~~eA~~yI~k------~~~-~~rv~~y~~~~~~~~A~~~A~ 286 (319)
T PF04840_consen 247 CLKYGNKKEASKYIPK------IPD-EERVEMYLKCGDYKEAAQEAF 286 (319)
T ss_pred HHHCCCHHHHHHHHHh------CCh-HHHHHHHHHCCCHHHHHHHHH
Confidence 7777777777776665 223 555677777777777766543
No 163
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=96.70 E-value=0.13 Score=43.98 Aligned_cols=90 Identities=11% Similarity=0.084 Sum_probs=60.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH----HhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcC
Q 042546 555 ELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPFIKYV----SKSGTSDDAIAFLKGMTSKRFPSMSVVLCLFAAFFQAR 630 (671)
Q Consensus 555 ~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~t~~~~l----~~~g~~~~A~~~~~~m~~~~~p~~~~~~~l~~~~~~~g 630 (671)
.+-..+.+.|++++|.++|+-+.. +.|....+.-.| -..|++++|+..+.......+.|+..+-.+..++.+.|
T Consensus 40 ~~A~~ly~~G~l~~A~~~f~~L~~--~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~lG 117 (157)
T PRK15363 40 RYAMQLMEVKEFAGAARLFQLLTI--YDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLACD 117 (157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcC
Confidence 344445667777777777777664 345554443222 35677777887777777766667777777777888888
Q ss_pred CHHHHHHHHHhchHhh
Q 042546 631 RHSEAQDLLSKCPRYV 646 (671)
Q Consensus 631 ~~~~A~~~~~~m~~~~ 646 (671)
+.+.|.+-|+......
T Consensus 118 ~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 118 NVCYAIKALKAVVRIC 133 (157)
T ss_pred CHHHHHHHHHHHHHHh
Confidence 8888888877765554
No 164
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.69 E-value=0.0075 Score=44.14 Aligned_cols=63 Identities=17% Similarity=0.262 Sum_probs=39.4
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 042546 419 ISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSL 484 (671)
Q Consensus 419 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l 484 (671)
.+.|++++|.++|+.+.+.. +-+...+..+..+|.+.|++++|.++++.+... .|+...|..+
T Consensus 2 l~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~--~~~~~~~~~l 64 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ--DPDNPEYQQL 64 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG--GTTHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCHHHHHHH
Confidence 35567777777777766554 335666666777777777777777777776665 4554444444
No 165
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=96.68 E-value=0.0074 Score=43.71 Aligned_cols=56 Identities=18% Similarity=0.163 Sum_probs=45.0
Q ss_pred HHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhchHh
Q 042546 590 KYVSKSGTSDDAIAFLKGMTSKRFPSMSVVLCLFAAFFQARRHSEAQDLLSKCPRY 645 (671)
Q Consensus 590 ~~l~~~g~~~~A~~~~~~m~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 645 (671)
..+.+.|++++|...|+.+.+..+-+...+..+..++.+.|++++|..+|++..+.
T Consensus 5 ~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 5 RALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 45567888888888888888877778888888888888999999999888887543
No 166
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=96.68 E-value=0.041 Score=55.66 Aligned_cols=100 Identities=9% Similarity=-0.040 Sum_probs=79.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 042546 416 KALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLD 495 (671)
Q Consensus 416 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~ 495 (671)
..+...|++++|.+.|++..+.. +.+...|..+..+|.+.|++++|+..+++..+.. ..+...|..+..+|...|+++
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~~ 87 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEYQ 87 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCHH
Confidence 44567899999999999998765 4567788888899999999999999999998764 335677888888999999999
Q ss_pred HHHHHHHHHHHcCCCCCCHHHHHHH
Q 042546 496 KAADCFQKMVEKEGTSHAGYAIDLL 520 (671)
Q Consensus 496 ~a~~~~~~m~~~~g~~p~~~~~~~l 520 (671)
+|...|++..+ +.|+.......
T Consensus 88 eA~~~~~~al~---l~P~~~~~~~~ 109 (356)
T PLN03088 88 TAKAALEKGAS---LAPGDSRFTKL 109 (356)
T ss_pred HHHHHHHHHHH---hCCCCHHHHHH
Confidence 99999999876 34444333333
No 167
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=96.65 E-value=0.28 Score=47.91 Aligned_cols=202 Identities=13% Similarity=0.096 Sum_probs=105.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCC---CCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 042546 410 MLNSVLKALISVGRMGECNKILKAMEEGGF---IAS--SNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSL 484 (671)
Q Consensus 410 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l 484 (671)
.|......|-..|++++|.+.|.+..+... .+. ...|......|.+. ++++|.+.+++ .
T Consensus 37 ~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~---------------A 100 (282)
T PF14938_consen 37 LYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEK---------------A 100 (282)
T ss_dssp HHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHH---------------H
T ss_pred HHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHH---------------H
Confidence 366667777788888888888876543110 011 11233333333222 55555555544 3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHhCCCCCC----HHHHHHHHHH
Q 042546 485 IKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSK-NRAIDACKFVHNCVREYDLKPW----HTTYEELIKN 559 (671)
Q Consensus 485 i~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~~~~~p~----~~~~~~li~~ 559 (671)
+..|...|++..|-+.+..+-+ .|-.. |++++|.+.|++..+-+...-. ...+..+...
T Consensus 101 ~~~y~~~G~~~~aA~~~~~lA~----------------~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l 164 (282)
T PF14938_consen 101 IEIYREAGRFSQAAKCLKELAE----------------IYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADL 164 (282)
T ss_dssp HHHHHHCT-HHHHHHHHHHHHH----------------HHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHhcCcHHHHHHHHHHHHH----------------HHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHH
Confidence 4456666666666665555433 34444 6677777776665432111111 1244555666
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCH------HHH-HHHH--HhcCChHHHHHHHHHhhhCCC--CC---HHHHHHHHHH
Q 042546 560 LLVQRGFKDALSLLCLMKDHGFPPFV------DPF-IKYV--SKSGTSDDAIAFLKGMTSKRF--PS---MSVVLCLFAA 625 (671)
Q Consensus 560 ~~~~g~~~~A~~l~~~m~~~~~~p~~------~t~-~~~l--~~~g~~~~A~~~~~~m~~~~~--p~---~~~~~~l~~~ 625 (671)
+.+.|++++|.++|++....-...+. ..+ ..++ ...|+...|.+.+++.....+ .+ ......|+.+
T Consensus 165 ~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A 244 (282)
T PF14938_consen 165 YARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEA 244 (282)
T ss_dssp HHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHH
Confidence 77788888888888877654332211 112 2222 356778888888887765432 22 2334455666
Q ss_pred HHH--cCCHHHHHHHHHhch
Q 042546 626 FFQ--ARRHSEAQDLLSKCP 643 (671)
Q Consensus 626 ~~~--~g~~~~A~~~~~~m~ 643 (671)
+-. ...+++|..-|+.+.
T Consensus 245 ~~~~D~e~f~~av~~~d~~~ 264 (282)
T PF14938_consen 245 YEEGDVEAFTEAVAEYDSIS 264 (282)
T ss_dssp HHTT-CCCHHHHCHHHTTSS
T ss_pred HHhCCHHHHHHHHHHHcccC
Confidence 644 234666666666655
No 168
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.61 E-value=0.073 Score=43.80 Aligned_cols=83 Identities=17% Similarity=0.136 Sum_probs=45.3
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHH-----HHHHHHHhcCChHHHHHHHHHhhhCCCC---CHHHHHHHHHHHHHcC
Q 042546 559 NLLVQRGFKDALSLLCLMKDHGFPPFVD-----PFIKYVSKSGTSDDAIAFLKGMTSKRFP---SMSVVLCLFAAFFQAR 630 (671)
Q Consensus 559 ~~~~~g~~~~A~~l~~~m~~~~~~p~~~-----t~~~~l~~~g~~~~A~~~~~~m~~~~~p---~~~~~~~l~~~~~~~g 630 (671)
++-..|+.++|+.+|++....|...... .+.+.|...|+.++|..++++.....+. +......+..++...|
T Consensus 10 a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~g 89 (120)
T PF12688_consen 10 AHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNLG 89 (120)
T ss_pred HHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHCC
Confidence 4445666666666666666665544321 1244455666666666666666553321 2223333344566667
Q ss_pred CHHHHHHHHHh
Q 042546 631 RHSEAQDLLSK 641 (671)
Q Consensus 631 ~~~~A~~~~~~ 641 (671)
+.++|.+.+-.
T Consensus 90 r~~eAl~~~l~ 100 (120)
T PF12688_consen 90 RPKEALEWLLE 100 (120)
T ss_pred CHHHHHHHHHH
Confidence 77766666544
No 169
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=96.61 E-value=0.14 Score=45.82 Aligned_cols=91 Identities=11% Similarity=-0.022 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 042546 409 AMLNSVLKALISVGRMGECNKILKAMEEGGFIAS--SNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIK 486 (671)
Q Consensus 409 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~ 486 (671)
..+..+...|...|++++|...|++..+....+. ...+..+...+.+.|++++|...+++..+.. +-+...+..+..
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 114 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHH
Confidence 3567777778888999999999998876432222 3577888888888999999999988887653 224455666666
Q ss_pred HHHhcCCHHHHHHH
Q 042546 487 GHCVAGDLDKAADC 500 (671)
Q Consensus 487 ~~~~~g~~~~a~~~ 500 (671)
.+...|+...+..-
T Consensus 115 ~~~~~g~~~~a~~~ 128 (172)
T PRK02603 115 IYHKRGEKAEEAGD 128 (172)
T ss_pred HHHHcCChHhHhhC
Confidence 77777765544433
No 170
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=96.60 E-value=0.93 Score=45.46 Aligned_cols=458 Identities=9% Similarity=0.069 Sum_probs=237.5
Q ss_pred CCChHHHHHHHHHHhhcCCCCCC----HHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH--HHcCC
Q 042546 141 ESSPDEARRFFNWVLEKESERLS----SKTYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRNKMTEKF--EKEGL 214 (671)
Q Consensus 141 ~~~~~~A~~~f~~m~~~~~~~~~----~~~~n~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~--~~~g~ 214 (671)
.+++.+|.++|.++-+...-.|. .+.-+.+|++|..++ .+.....+.+..+. .| ...|..+..+. -+.+.
T Consensus 19 q~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~n-ld~Me~~l~~l~~~--~~-~s~~l~LF~~L~~Y~~k~ 94 (549)
T PF07079_consen 19 QKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLNN-LDLMEKQLMELRQQ--FG-KSAYLPLFKALVAYKQKE 94 (549)
T ss_pred HhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHhh-HHHHHHHHHHHHHh--cC-CchHHHHHHHHHHHHhhh
Confidence 68999999999998763322232 344667888887654 45555555555443 22 34455555543 35566
Q ss_pred hhHHHHHHHHHHcCCCCChHHHHHHHHHHHHhcCCChhHHHHHHhhcccccChHHHHHHHHHhCCChHHHHHHHHHHHHc
Q 042546 215 ESDLEKLKGIFATGSIDNSIEKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEES 294 (671)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~f~~~~~~ 294 (671)
.+.|.................+....+...... +-+.+.....++.. |++.+++.+++++...
T Consensus 95 ~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~d---------------f~l~~i~a~sLIe~--g~f~EgR~iLn~i~~~ 157 (549)
T PF07079_consen 95 YRKALQALSVWKEQIKGTESPWLDTNIQQLFSD---------------FFLDEIEAHSLIET--GRFSEGRAILNRIIER 157 (549)
T ss_pred HHHHHHHHHHHHhhhcccccchhhhhHHHHhhH---------------HHHHHHHHHHHHhc--CCcchHHHHHHHHHHH
Confidence 666666655544432211111111100000000 00111111222222 7777777777776531
Q ss_pred ---CCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHc---CCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCC
Q 042546 295 ---GFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSK---GYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNK 368 (671)
Q Consensus 295 ---~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~g~~ 368 (671)
.-..-|+.+||.++-.+++. .|-++++. .+-|| |.-||-.|-+. ...++.-.=..+.
T Consensus 158 llkrE~~w~~d~yd~~vlmlsrS--------YfLEl~e~~s~dl~pd---yYemilfY~kk------i~~~d~~~Y~k~~ 220 (549)
T PF07079_consen 158 LLKRECEWNSDMYDRAVLMLSRS--------YFLELKESMSSDLYPD---YYEMILFYLKK------IHAFDQRPYEKFI 220 (549)
T ss_pred HhhhhhcccHHHHHHHHHHHhHH--------HHHHHHHhcccccChH---HHHHHHHHHHH------HHHHhhchHHhhC
Confidence 11235777777766665543 33333321 22232 23333333322 1111111111244
Q ss_pred CCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCC----CCCH
Q 042546 369 PSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDA-MLNSVLKALISVGRMGECNKILKAMEEGGF----IASS 443 (671)
Q Consensus 369 p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~----~~~~ 443 (671)
|.......++....-....-.....++++.....-+.|+-. +...++..+.+ +.+++..+-+.+....+ +.=.
T Consensus 221 peeeL~s~imqhlfi~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li 298 (549)
T PF07079_consen 221 PEEELFSTIMQHLFIVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELI 298 (549)
T ss_pred cHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHH
Confidence 55555555555554444333445566666666666666643 33444444444 55555555554443221 1224
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH-------HHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCC
Q 042546 444 NMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMW-------VSLIKGHCV----AGDLDKAADCFQKMVEKEGTSH 512 (671)
Q Consensus 444 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~-------~~li~~~~~----~g~~~~a~~~~~~m~~~~g~~p 512 (671)
.++..++....+.++.++|.+.+.-+..- .|+...- ..+-+..|. .-+...=+.+|+.... ..+.-
T Consensus 299 ~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~l--dp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs-~DiDr 375 (549)
T PF07079_consen 299 DRFGNLLSFKVKQVQTEEAKQYLALLKIL--DPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQS-YDIDR 375 (549)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHhc--CCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHh-hcccH
Confidence 57788888889999999999888877653 3332211 111122221 1122333445555544 33321
Q ss_pred CHHHHHHHHH---HHHhcCC-HHHHHHHHHHHHHhCCCCCCHHHHHHHH----HHHHh---cCCHHHHHHHHHHHHhCCC
Q 042546 513 AGYAIDLLVN---TYCSKNR-AIDACKFVHNCVREYDLKPWHTTYEELI----KNLLV---QRGFKDALSLLCLMKDHGF 581 (671)
Q Consensus 513 ~~~~~~~li~---~~~~~g~-~~~A~~~~~~m~~~~~~~p~~~~~~~li----~~~~~---~g~~~~A~~l~~~m~~~~~ 581 (671)
-. .-.-|+. -+-+.|. -+.|.++++.+..- ..-|...-|.+. .+|.+ ...+.+-+.+-+-+.+.|+
T Consensus 376 qQ-Lvh~L~~~Ak~lW~~g~~dekalnLLk~il~f--t~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl 452 (549)
T PF07079_consen 376 QQ-LVHYLVFGAKHLWEIGQCDEKALNLLKLILQF--TNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGL 452 (549)
T ss_pred HH-HHHHHHHHHHHHHhcCCccHHHHHHHHHHHHh--ccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCC
Confidence 11 1112222 2445565 77899999888752 222333333222 23433 2334444555555567788
Q ss_pred CCCHH---HHH------HHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhchHh
Q 042546 582 PPFVD---PFI------KYVSKSGTSDDAIAFLKGMTSKRFPSMSVVLCLFAAFFQARRHSEAQDLLSKCPRY 645 (671)
Q Consensus 582 ~p~~~---t~~------~~l~~~g~~~~A~~~~~~m~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 645 (671)
.|-.. -+. ..+-..|++.++.-+-..+.+ ..|++.+|..+.-.+....+++||.+++++.|.+
T Consensus 453 ~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~-iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP~n 524 (549)
T PF07079_consen 453 TPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTK-IAPSPQAYRLLGLCLMENKRYQEAWEYLQKLPPN 524 (549)
T ss_pred CcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH-hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCCCc
Confidence 77542 122 233468999888766555444 4579999999999999999999999999999963
No 171
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.57 E-value=0.89 Score=44.91 Aligned_cols=111 Identities=14% Similarity=0.128 Sum_probs=84.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHh
Q 042546 515 YAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPFIKYVSK 594 (671)
Q Consensus 515 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~t~~~~l~~ 594 (671)
.+.+..|.-+...|+...|.++-.+. .+ |+..-|-..+.+|+..++|++-.++... ..-+-....|+..|.+
T Consensus 178 ~Sl~~Ti~~li~~~~~k~A~kl~k~F----kv-~dkrfw~lki~aLa~~~~w~eL~~fa~s---kKsPIGyepFv~~~~~ 249 (319)
T PF04840_consen 178 LSLNDTIRKLIEMGQEKQAEKLKKEF----KV-PDKRFWWLKIKALAENKDWDELEKFAKS---KKSPIGYEPFVEACLK 249 (319)
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHHc----CC-cHHHHHHHHHHHHHhcCCHHHHHHHHhC---CCCCCChHHHHHHHHH
Confidence 34555566677789988887776554 34 8889999999999999999988887543 2223344778999999
Q ss_pred cCChHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhc
Q 042546 595 SGTSDDAIAFLKGMTSKRFPSMSVVLCLFAAFFQARRHSEAQDLLSKC 642 (671)
Q Consensus 595 ~g~~~~A~~~~~~m~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m 642 (671)
.|...+|..+...+. +..-+..|.+.|++.+|.+.--+.
T Consensus 250 ~~~~~eA~~yI~k~~---------~~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 250 YGNKKEASKYIPKIP---------DEERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred CCCHHHHHHHHHhCC---------hHHHHHHHHHCCCHHHHHHHHHHc
Confidence 999999999988732 245578889999999997765543
No 172
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=96.54 E-value=0.65 Score=44.04 Aligned_cols=175 Identities=15% Similarity=0.090 Sum_probs=94.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHh-
Q 042546 450 AFRLSSAGKKDEANEFMDHMEASGSDVGDKM--WVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCS- 526 (671)
Q Consensus 450 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~--~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~- 526 (671)
...+.+.|++++|.+.|+++...-..+.... .-.+..++.+.+++++|...+++..+...-.|+. -|...+.+.+.
T Consensus 39 A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~-~~a~Y~~g~~~~ 117 (243)
T PRK10866 39 AQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNI-DYVLYMRGLTNM 117 (243)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCch-HHHHHHHHHhhh
Confidence 3344556777777777777665432221111 1234455666777777777777766633333333 22222222221
Q ss_pred -c---------------CC---HHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 042546 527 -K---------------NR---AIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDP 587 (671)
Q Consensus 527 -~---------------g~---~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~t 587 (671)
. .+ ..+|...|+++.++ |=...-..+|.+.+..+.+. +.-....
T Consensus 118 ~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~----------------yP~S~ya~~A~~rl~~l~~~-la~~e~~ 180 (243)
T PRK10866 118 ALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG----------------YPNSQYTTDATKRLVFLKDR-LAKYELS 180 (243)
T ss_pred hcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH----------------CcCChhHHHHHHHHHHHHHH-HHHHHHH
Confidence 0 11 22344444444443 22223344444433333211 0001122
Q ss_pred HHHHHHhcCChHHHHHHHHHhhhCCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHhc
Q 042546 588 FIKYVSKSGTSDDAIAFLKGMTSKRF---PSMSVVLCLFAAFFQARRHSEAQDLLSKC 642 (671)
Q Consensus 588 ~~~~l~~~g~~~~A~~~~~~m~~~~~---p~~~~~~~l~~~~~~~g~~~~A~~~~~~m 642 (671)
....|-+.|.+..|..-++.+.+.-+ ........++.+|.+.|..++|.......
T Consensus 181 ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 181 VAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred HHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 34557788999999999999988543 34556677889999999999998877654
No 173
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=96.54 E-value=0.03 Score=56.67 Aligned_cols=94 Identities=11% Similarity=-0.030 Sum_probs=59.2
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH-HH---HHHHHhcCC
Q 042546 522 NTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVD-PF---IKYVSKSGT 597 (671)
Q Consensus 522 ~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~-t~---~~~l~~~g~ 597 (671)
..+...|++++|.+.|.+.... -.-+...|..+..+|.+.|++++|+..+++..+. .|+.. .+ ..+|...|+
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~~--~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l--~P~~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAIDL--DPNNAELYADRAQANIKLGNFTEAVADANKAIEL--DPSLAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHhCC
Confidence 3455667777888777777653 2234556666667777777777777777777653 34432 22 344456777
Q ss_pred hHHHHHHHHHhhhCCCCCHHHH
Q 042546 598 SDDAIAFLKGMTSKRFPSMSVV 619 (671)
Q Consensus 598 ~~~A~~~~~~m~~~~~p~~~~~ 619 (671)
+++|+..|++.....+.+....
T Consensus 86 ~~eA~~~~~~al~l~P~~~~~~ 107 (356)
T PLN03088 86 YQTAKAALEKGASLAPGDSRFT 107 (356)
T ss_pred HHHHHHHHHHHHHhCCCCHHHH
Confidence 7777777777776554444443
No 174
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.53 E-value=0.41 Score=41.76 Aligned_cols=126 Identities=14% Similarity=0.036 Sum_probs=54.9
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--CCCCCHHHH
Q 042546 476 VGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREY--DLKPWHTTY 553 (671)
Q Consensus 476 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~~~p~~~~~ 553 (671)
|++..--.|-.+....|+..+|...|++... --+.-|....-.+.++....++...|...++.+.+-. +-.||. .
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qals-G~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~--~ 163 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQALS-GIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDG--H 163 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhc-cccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCc--h
Confidence 4444444444555555555555555555543 2233344444444444444555555555555444321 112222 1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH---HHHHHHHhcCChHHHHHHHH
Q 042546 554 EELIKNLLVQRGFKDALSLLCLMKDHGFPPFVD---PFIKYVSKSGTSDDAIAFLK 606 (671)
Q Consensus 554 ~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~---t~~~~l~~~g~~~~A~~~~~ 606 (671)
-.+...|...|+..+|..-|+..... .|+.. -|...+.+.|+.++|..-+.
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq~~ 217 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQYV 217 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHHHH
Confidence 22334444455555555555544432 22221 12344445555444444333
No 175
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.51 E-value=0.15 Score=46.91 Aligned_cols=163 Identities=12% Similarity=0.007 Sum_probs=110.4
Q ss_pred ChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHH
Q 042546 280 EPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLY 359 (671)
Q Consensus 280 ~~~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~ 359 (671)
..+...+.|+.- -....+.++..+.-.|.+.-...++.+..++.-+-++.....+.+.-.+.|+.+.|...|
T Consensus 164 ~~ESsv~lW~KR--------l~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf 235 (366)
T KOG2796|consen 164 AEESSIRLWRKR--------LGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYF 235 (366)
T ss_pred chhhHHHHHHHH--------HHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHH
Confidence 335556666532 235667778888888888889999999988766667888888999899999999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 042546 360 EFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGF 439 (671)
Q Consensus 360 ~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 439 (671)
++..+..-+.|..+.+.++ ....-..|.-.+++.+|...|.+....+
T Consensus 236 ~~vek~~~kL~~~q~~~~V--------------------------------~~n~a~i~lg~nn~a~a~r~~~~i~~~D- 282 (366)
T KOG2796|consen 236 QDVEKVTQKLDGLQGKIMV--------------------------------LMNSAFLHLGQNNFAEAHRFFTEILRMD- 282 (366)
T ss_pred HHHHHHHhhhhccchhHHH--------------------------------HhhhhhheecccchHHHHHHHhhccccC-
Confidence 9877543333322222221 2222234556678888888888887655
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 042546 440 IASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLI 485 (671)
Q Consensus 440 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li 485 (671)
..|....|.-.-+..-.|+..+|.+.++.|.+. .|...+-++++
T Consensus 283 ~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l~es~~ 326 (366)
T KOG2796|consen 283 PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYLHESVL 326 (366)
T ss_pred CCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccchhhhHH
Confidence 445555554444444578999999999999876 45555555443
No 176
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=96.49 E-value=0.0051 Score=47.40 Aligned_cols=19 Identities=16% Similarity=0.377 Sum_probs=7.6
Q ss_pred HHHHHHhcCCHHHHHHHHH
Q 042546 520 LVNTYCSKNRAIDACKFVH 538 (671)
Q Consensus 520 li~~~~~~g~~~~A~~~~~ 538 (671)
+..+|.+.|++++|..+++
T Consensus 31 la~~~~~~~~y~~A~~~~~ 49 (84)
T PF12895_consen 31 LAQCYFQQGKYEEAIELLQ 49 (84)
T ss_dssp HHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHH
Confidence 3333444444444444443
No 177
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=96.46 E-value=0.0055 Score=47.21 Aligned_cols=47 Identities=21% Similarity=0.169 Sum_probs=20.9
Q ss_pred CCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 042546 422 GRMGECNKILKAMEEGGFI-ASSNMKSKIAFRLSSAGKKDEANEFMDH 468 (671)
Q Consensus 422 g~~~~A~~~~~~m~~~g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~ 468 (671)
|+++.|..+|+++.+..-. ++...+-.+..+|.+.|++++|..+++.
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~ 50 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK 50 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 4455555555555443210 1223333345555555555555555544
No 178
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=96.44 E-value=0.6 Score=45.63 Aligned_cols=33 Identities=15% Similarity=0.112 Sum_probs=19.6
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHH
Q 042546 316 CIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAM 363 (671)
Q Consensus 316 ~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~ 363 (671)
++++|..+|++. ...|-..|++++|.+.|.+..
T Consensus 30 ~~e~Aa~~y~~A---------------a~~fk~~~~~~~A~~ay~kAa 62 (282)
T PF14938_consen 30 DYEEAADLYEKA---------------ANCFKLAKDWEKAAEAYEKAA 62 (282)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTT-CHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH---------------HHHHHHHhccchhHHHHHHHH
Confidence 566666655543 344666677777777776654
No 179
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=96.42 E-value=0.52 Score=40.48 Aligned_cols=93 Identities=8% Similarity=-0.062 Sum_probs=66.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 042546 412 NSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVA 491 (671)
Q Consensus 412 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 491 (671)
-.+-.-+...|++++|.++|+.+.... +-+..-|-.|-.++-..|++++|+..|....... +-|...+-.+-.++...
T Consensus 39 Y~~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L~l 116 (157)
T PRK15363 39 YRYAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYLAC 116 (157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHc
Confidence 344445567788888888888777654 3455566677777777888888888888877665 34566666677777888
Q ss_pred CCHHHHHHHHHHHHH
Q 042546 492 GDLDKAADCFQKMVE 506 (671)
Q Consensus 492 g~~~~a~~~~~~m~~ 506 (671)
|+.+.|.+-|+....
T Consensus 117 G~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 117 DNVCYAIKALKAVVR 131 (157)
T ss_pred CCHHHHHHHHHHHHH
Confidence 888888888877766
No 180
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=96.40 E-value=0.23 Score=44.35 Aligned_cols=91 Identities=13% Similarity=0.125 Sum_probs=66.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-CHHHHH
Q 042546 442 SSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVG--DKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSH-AGYAID 518 (671)
Q Consensus 442 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p-~~~~~~ 518 (671)
....+..+...+...|++++|...|++..+....+. ...+..+...+.+.|++++|.+.+++..+ . .| +...+.
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-~--~p~~~~~~~ 110 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALE-L--NPKQPSALN 110 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-h--CcccHHHHH
Confidence 345677778888889999999999999886543332 35788888889999999999999998876 2 23 345566
Q ss_pred HHHHHHHhcCCHHHHHH
Q 042546 519 LLVNTYCSKNRAIDACK 535 (671)
Q Consensus 519 ~li~~~~~~g~~~~A~~ 535 (671)
.+...|...|+...+..
T Consensus 111 ~lg~~~~~~g~~~~a~~ 127 (172)
T PRK02603 111 NIAVIYHKRGEKAEEAG 127 (172)
T ss_pred HHHHHHHHcCChHhHhh
Confidence 66667777776554443
No 181
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=96.32 E-value=0.39 Score=51.01 Aligned_cols=63 Identities=13% Similarity=0.035 Sum_probs=39.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 042546 513 AGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKD 578 (671)
Q Consensus 513 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 578 (671)
+...|.++.-.+...|++++|...+++... ..|+...|..+...+...|+.++|.+.+++...
T Consensus 419 ~~~~~~ala~~~~~~g~~~~A~~~l~rAl~---L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~ 481 (517)
T PRK10153 419 LPRIYEILAVQALVKGKTDEAYQAINKAID---LEMSWLNYVLLGKVYELKGDNRLAADAYSTAFN 481 (517)
T ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHH---cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 334555554444556777777777776654 345666666666667777777777777766654
No 182
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=96.25 E-value=1.7 Score=44.60 Aligned_cols=166 Identities=11% Similarity=0.017 Sum_probs=112.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcC
Q 042546 414 VLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDK-MWVSLIKGHCVAG 492 (671)
Q Consensus 414 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~-~~~~li~~~~~~g 492 (671)
+-.+|.+.++.+.|...|.+.......|+. ..+....+++.+..+...-. .|... -...=...+.+.|
T Consensus 304 ~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~---------ls~lk~~Ek~~k~~e~~a~~--~pe~A~e~r~kGne~Fk~g 372 (539)
T KOG0548|consen 304 LGNAYTKREDYEGAIKYYQKALTEHRTPDL---------LSKLKEAEKALKEAERKAYI--NPEKAEEEREKGNEAFKKG 372 (539)
T ss_pred hhhhhhhHHhHHHHHHHHHHHhhhhcCHHH---------HHHHHHHHHHHHHHHHHHhh--ChhHHHHHHHHHHHHHhcc
Confidence 445777788999999999887654434332 22344556666655554433 23321 1222255678899
Q ss_pred CHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHH
Q 042546 493 DLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPW-HTTYEELIKNLLVQRGFKDALS 571 (671)
Q Consensus 493 ~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~ 571 (671)
++..|...|.++++ .. +-|...|..-.-+|.+.|.+..|.+-.+...+. .|+ ...|.-=..++....++++|++
T Consensus 373 dy~~Av~~YteAIk-r~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL---~p~~~kgy~RKg~al~~mk~ydkAle 447 (539)
T KOG0548|consen 373 DYPEAVKHYTEAIK-RD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIEL---DPNFIKAYLRKGAALRAMKEYDKALE 447 (539)
T ss_pred CHHHHHHHHHHHHh-cC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc---CchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999988 43 557788999999999999999999887777653 333 3334333344445678889999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHhcCC
Q 042546 572 LLCLMKDHGFPPFVDPFIKYVSKSGT 597 (671)
Q Consensus 572 l~~~m~~~~~~p~~~t~~~~l~~~g~ 597 (671)
.|++..+. .|+..-++..|.+|..
T Consensus 448 ay~eale~--dp~~~e~~~~~~rc~~ 471 (539)
T KOG0548|consen 448 AYQEALEL--DPSNAEAIDGYRRCVE 471 (539)
T ss_pred HHHHHHhc--CchhHHHHHHHHHHHH
Confidence 99988864 5888788887765543
No 183
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=96.24 E-value=0.14 Score=45.69 Aligned_cols=63 Identities=14% Similarity=-0.006 Sum_probs=37.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 042546 410 MLNSVLKALISVGRMGECNKILKAMEEGGFIA--SSNMKSKIAFRLSSAGKKDEANEFMDHMEAS 472 (671)
Q Consensus 410 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 472 (671)
.|..+...+...|++++|...|++.......+ ...+|..+...|...|++++|++.++.....
T Consensus 37 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~ 101 (168)
T CHL00033 37 TYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER 101 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 35555556666677777777777665432111 1235666666666777777777777666543
No 184
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.23 E-value=0.67 Score=40.52 Aligned_cols=134 Identities=13% Similarity=0.025 Sum_probs=101.5
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC---CCCC
Q 042546 508 EGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHG---FPPF 584 (671)
Q Consensus 508 ~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~---~~p~ 584 (671)
....|+...--.|..+..+.|+..+|...|++... .-+.-|....-.+.++....++..+|...++.+.+.. -.||
T Consensus 83 ~~~ApTvqnr~rLa~al~elGr~~EA~~hy~qals-G~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd 161 (251)
T COG4700 83 LAIAPTVQNRYRLANALAELGRYHEAVPHYQQALS-GIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPD 161 (251)
T ss_pred HhhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhc-cccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCC
Confidence 45667777777889999999999999999999875 2355677777778888888999999999999887643 3455
Q ss_pred HH-HHHHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhch
Q 042546 585 VD-PFIKYVSKSGTSDDAIAFLKGMTSKRFPSMSVVLCLFAAFFQARRHSEAQDLLSKCP 643 (671)
Q Consensus 585 ~~-t~~~~l~~~g~~~~A~~~~~~m~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 643 (671)
.. .|...|...|+..+|+..|+...+-- |+...-.-....+.++|+.++|..-+..+-
T Consensus 162 ~~Ll~aR~laa~g~~a~Aesafe~a~~~y-pg~~ar~~Y~e~La~qgr~~ea~aq~~~v~ 220 (251)
T COG4700 162 GHLLFARTLAAQGKYADAESAFEVAISYY-PGPQARIYYAEMLAKQGRLREANAQYVAVV 220 (251)
T ss_pred chHHHHHHHHhcCCchhHHHHHHHHHHhC-CCHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 43 35788999999999999999998854 333333333456788998888765554443
No 185
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=96.20 E-value=0.9 Score=48.34 Aligned_cols=63 Identities=17% Similarity=0.117 Sum_probs=35.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 042546 477 GDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVR 542 (671)
Q Consensus 477 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 542 (671)
+...|.++.-.....|++++|...+++... +.|+...|..+...|...|+.++|.+.+.+...
T Consensus 419 ~~~~~~ala~~~~~~g~~~~A~~~l~rAl~---L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~ 481 (517)
T PRK10153 419 LPRIYEILAVQALVKGKTDEAYQAINKAID---LEMSWLNYVLLGKVYELKGDNRLAADAYSTAFN 481 (517)
T ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHH---cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 334455544444445666666666666655 224555566666666666666666666655543
No 186
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.19 E-value=0.029 Score=41.71 Aligned_cols=66 Identities=17% Similarity=0.130 Sum_probs=49.0
Q ss_pred HHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhchHhhhccHHHHHH
Q 042546 590 KYVSKSGTSDDAIAFLKGMTSKRFPSMSVVLCLFAAFFQARRHSEAQDLLSKCPRYVRNHADVLNL 655 (671)
Q Consensus 590 ~~l~~~g~~~~A~~~~~~m~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~l 655 (671)
..+.+.+++++|.++++.+....|.+...|.....+|.+.|++++|.+.+++..+..++.+.+..+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~ 68 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARAL 68 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHH
Confidence 345677788888888888887777777778888888888888888888888877665555555443
No 187
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=96.16 E-value=1.2 Score=42.19 Aligned_cols=74 Identities=9% Similarity=0.084 Sum_probs=51.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHH---HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 042546 414 VLKALISVGRMGECNKILKAMEEGGFIASS-NMK---SKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHC 489 (671)
Q Consensus 414 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~-~~~---~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~ 489 (671)
....+.+.|++++|.+.|+.+...- |+. ... -.+..+|-+.+++++|...+++..+....-...-|...+.+.+
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~y--P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~ 115 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRY--PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLT 115 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHh
Confidence 4444567899999999999998753 332 222 3466788899999999999999987643333344555555544
No 188
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=96.12 E-value=0.092 Score=46.77 Aligned_cols=92 Identities=9% Similarity=-0.003 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH--HHH---HHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHH
Q 042546 551 TTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFV--DPF---IKYVSKSGTSDDAIAFLKGMTSKRFPSMSVVLCLFAA 625 (671)
Q Consensus 551 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~--~t~---~~~l~~~g~~~~A~~~~~~m~~~~~p~~~~~~~l~~~ 625 (671)
..|..+...+...|++++|+..|++.......|.. .++ ...+.+.|+.++|+..++......+.....+..+...
T Consensus 36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i 115 (168)
T CHL00033 36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVI 115 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHH
Confidence 34445555555566666666666666543222111 111 2334566777777777766666544445556666666
Q ss_pred HH-------HcCCHHHHHHHHHhc
Q 042546 626 FF-------QARRHSEAQDLLSKC 642 (671)
Q Consensus 626 ~~-------~~g~~~~A~~~~~~m 642 (671)
|. +.|++++|...+++-
T Consensus 116 ~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 116 CHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHhhHHHHHcccHHHHHHHHHHH
Confidence 66 778888776666553
No 189
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.09 E-value=0.48 Score=39.03 Aligned_cols=87 Identities=17% Similarity=0.181 Sum_probs=42.8
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCC----HHHHHHHHHHH
Q 042546 451 FRLSSAGKKDEANEFMDHMEASGSDVG--DKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHA----GYAIDLLVNTY 524 (671)
Q Consensus 451 ~~~~~~g~~~~A~~~~~~m~~~g~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~----~~~~~~li~~~ 524 (671)
.++-..|+.++|..+|++....|.... ...+-.+-+.+...|++++|..++++... .. |+ ......+..++
T Consensus 9 ~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~-~~--p~~~~~~~l~~f~Al~L 85 (120)
T PF12688_consen 9 WAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALE-EF--PDDELNAALRVFLALAL 85 (120)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-HC--CCccccHHHHHHHHHHH
Confidence 344455666666666666655554332 22344455555666666666666665554 11 21 11111122244
Q ss_pred HhcCCHHHHHHHHHHH
Q 042546 525 CSKNRAIDACKFVHNC 540 (671)
Q Consensus 525 ~~~g~~~~A~~~~~~m 540 (671)
...|+.++|.+.+-..
T Consensus 86 ~~~gr~~eAl~~~l~~ 101 (120)
T PF12688_consen 86 YNLGRPKEALEWLLEA 101 (120)
T ss_pred HHCCCHHHHHHHHHHH
Confidence 4556666666655443
No 190
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=96.09 E-value=0.031 Score=40.38 Aligned_cols=56 Identities=16% Similarity=0.131 Sum_probs=35.8
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 042546 416 KALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEAS 472 (671)
Q Consensus 416 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 472 (671)
..+.+.|++++|.+.|++..+.. +-+...+..+..++.+.|++++|...|+++.+.
T Consensus 5 ~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 5 RALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 44566677777777777776654 335556666666677777777777777766544
No 191
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=96.05 E-value=3 Score=45.66 Aligned_cols=80 Identities=14% Similarity=0.045 Sum_probs=58.2
Q ss_pred CCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHH
Q 042546 141 ESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRNKMTEKFEKEGLESDLEK 220 (671)
Q Consensus 141 ~~~~~~A~~~f~~m~~~~~~~~~~~~~n~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~~~ 220 (671)
.+++..|+...+.+.++.|-.+-...+-+++ +.|.|+.++|..+++.....+.. |..|...+-..|.+.|+.+++..
T Consensus 22 ~~qfkkal~~~~kllkk~Pn~~~a~vLkaLs--l~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~~ 98 (932)
T KOG2053|consen 22 SSQFKKALAKLGKLLKKHPNALYAKVLKALS--LFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAVH 98 (932)
T ss_pred hHHHHHHHHHHHHHHHHCCCcHHHHHHHHHH--HHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHHH
Confidence 3789999999998887664443333333332 35789999999999988776655 88899888888888877776665
Q ss_pred HHH
Q 042546 221 LKG 223 (671)
Q Consensus 221 ~~~ 223 (671)
+.+
T Consensus 99 ~Ye 101 (932)
T KOG2053|consen 99 LYE 101 (932)
T ss_pred HHH
Confidence 543
No 192
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.05 E-value=2.5 Score=44.75 Aligned_cols=239 Identities=13% Similarity=0.022 Sum_probs=129.9
Q ss_pred ChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHc-CCCCC--------HHHHHHHHHHHHhCC
Q 042546 280 EPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSK-GYEME--------METCVKVLGRFSERN 350 (671)
Q Consensus 280 ~~~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~--------~~t~~~li~~~~~~g 350 (671)
.+++|.++.+. .|....|..+.....+.-.++.|+..|-+.... |++.- ...-.+=|.+| -|
T Consensus 678 gledA~qfiEd-------nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~--~g 748 (1189)
T KOG2041|consen 678 GLEDAIQFIED-------NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAF--YG 748 (1189)
T ss_pred chHHHHHHHhc-------CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhh--hc
Confidence 34566655542 677788888887777777777777777655432 22110 00111122333 37
Q ss_pred ChHHHHHHHHHHHhCCCCC----CHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 042546 351 MVKEAVDLYEFAMACKNKP----SVNCCTFLLRKIVVSKQL-DMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMG 425 (671)
Q Consensus 351 ~~~~a~~l~~~m~~~g~~p----~~~~~~~ll~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 425 (671)
++++|.++|-+|-++.+.. ..--|-.+...+...|.. |.+..+..++.+.+. --+...|......|.++|+.+
T Consensus 749 ~feeaek~yld~drrDLAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~--fa~~~~We~A~~yY~~~~~~e 826 (1189)
T KOG2041|consen 749 EFEEAEKLYLDADRRDLAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGET--FAEMMEWEEAAKYYSYCGDTE 826 (1189)
T ss_pred chhHhhhhhhccchhhhhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhccchH
Confidence 8899999888876543211 111222333333322211 122222222222211 011223556666677777665
Q ss_pred HHHHH------HHHHH--HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 042546 426 ECNKI------LKAME--EGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKA 497 (671)
Q Consensus 426 ~A~~~------~~~m~--~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a 497 (671)
.-.+. |+++. ...++-|....-.+..++.+.|.-++|.+.|-+-. .|- +.+..|...+++.+|
T Consensus 827 ~~~ecly~le~f~~LE~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s----~pk-----aAv~tCv~LnQW~~a 897 (1189)
T KOG2041|consen 827 NQIECLYRLELFGELEVLARTLPEDSELLPVMADMFTSVGMCDQAVEAYLRRS----LPK-----AAVHTCVELNQWGEA 897 (1189)
T ss_pred hHHHHHHHHHhhhhHHHHHHhcCcccchHHHHHHHHHhhchHHHHHHHHHhcc----CcH-----HHHHHHHHHHHHHHH
Confidence 43332 22222 12345666677788899999999999988775432 232 345677888888888
Q ss_pred HHHHHHHHHcCCCCCCHHHH--------------HHHHHHHHhcCCHHHHHHHHHHHHHh
Q 042546 498 ADCFQKMVEKEGTSHAGYAI--------------DLLVNTYCSKNRAIDACKFVHNCVRE 543 (671)
Q Consensus 498 ~~~~~~m~~~~g~~p~~~~~--------------~~li~~~~~~g~~~~A~~~~~~m~~~ 543 (671)
.++-+...- |.+.|. ---|..+.+.|+.-+|-+++.+|.++
T Consensus 898 velaq~~~l-----~qv~tliak~aaqll~~~~~~eaIe~~Rka~~~~daarll~qmae~ 952 (1189)
T KOG2041|consen 898 VELAQRFQL-----PQVQTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQMAER 952 (1189)
T ss_pred HHHHHhccc-----hhHHHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHHHhHH
Confidence 877654322 222221 12345667788888888888877653
No 193
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.02 E-value=0.11 Score=43.12 Aligned_cols=99 Identities=13% Similarity=0.131 Sum_probs=65.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 042546 407 TDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIK 486 (671)
Q Consensus 407 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~ 486 (671)
|..++..+|.++++.|+++....+.+..- |+.++.. ...+. .-......|+..+..+++.
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~W--gI~~~~~---------~~~~~---------~~~~spl~Pt~~lL~AIv~ 60 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVW--GIDVNGK---------KKEGD---------YPPSSPLYPTSRLLIAIVH 60 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhc--CCCCCCc---------cccCc---------cCCCCCCCCCHHHHHHHHH
Confidence 44566777777777777777776665443 2211110 00000 1123345788888888999
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHH
Q 042546 487 GHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYC 525 (671)
Q Consensus 487 ~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~ 525 (671)
+|+.+|++..|.++.+...+..+++.+..+|..|+.=..
T Consensus 61 sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 61 SFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAY 99 (126)
T ss_pred HHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 998889999999988888877888888888888887443
No 194
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.99 E-value=0.12 Score=48.09 Aligned_cols=91 Identities=15% Similarity=0.179 Sum_probs=66.6
Q ss_pred CCCHHHHHHHHHHHHcc-----CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCC----------------ChHHHH
Q 042546 298 KHDESSYNAMASVLGRE-----DCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERN----------------MVKEAV 356 (671)
Q Consensus 298 ~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g----------------~~~~a~ 356 (671)
+.|-.+|-+++..+... +.++-....++.|++.|++.|..+|+.||+.+-+-. +-+-++
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I 143 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAI 143 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHH
Confidence 67888888888887644 567777778899999999999999999999875542 224566
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCccc
Q 042546 357 DLYEFAMACKNKPSVNCCTFLLRKIVVSKQLD 388 (671)
Q Consensus 357 ~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~ 388 (671)
+++++|..+|+.||..+-..|++++.+-+.+-
T Consensus 144 ~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~ 175 (406)
T KOG3941|consen 144 KVLEQMEWHGVMPDKEIEDILVNAFGRWNFPT 175 (406)
T ss_pred HHHHHHHHcCCCCchHHHHHHHHHhccccccH
Confidence 66677776677776666666666666555443
No 195
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=95.97 E-value=1.4 Score=41.09 Aligned_cols=59 Identities=15% Similarity=0.076 Sum_probs=44.5
Q ss_pred HHHHHhcCChHHHHHHHHHhhhCCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHhchHhhh
Q 042546 589 IKYVSKSGTSDDAIAFLKGMTSKRFP---SMSVVLCLFAAFFQARRHSEAQDLLSKCPRYVR 647 (671)
Q Consensus 589 ~~~l~~~g~~~~A~~~~~~m~~~~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 647 (671)
...|.+.|.+..|..-++.|.+.-+. .....-.|..+|.+.|..++|.+.-.-+..+..
T Consensus 174 aryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p 235 (254)
T COG4105 174 ARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANYP 235 (254)
T ss_pred HHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCC
Confidence 56667899999999999999986432 334566678899999999999887776654433
No 196
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=95.72 E-value=2.1 Score=41.30 Aligned_cols=168 Identities=12% Similarity=0.094 Sum_probs=110.3
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH----
Q 042546 405 VLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKM---- 480 (671)
Q Consensus 405 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~---- 480 (671)
+.|...|..-..+|...|++..|+.=++...+.. ..+..+.--+-..+-..|+.+.++...++-.+. .||...
T Consensus 186 ~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~~ 262 (504)
T KOG0624|consen 186 PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFPF 262 (504)
T ss_pred cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHHH
Confidence 3455556666677788888888776666555443 344555555666677788888888877777654 455432
Q ss_pred HHHH---------HHHHHhcCCHHHHHHHHHHHHHcCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCC
Q 042546 481 WVSL---------IKGHCVAGDLDKAADCFQKMVEKEGTSHAG---YAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKP 548 (671)
Q Consensus 481 ~~~l---------i~~~~~~g~~~~a~~~~~~m~~~~g~~p~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p 548 (671)
|-.+ +......+++.++.+-.+...+ ..-.... ..+..+-.+|...|++.+|.+...+..+ +.|
T Consensus 263 YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk-~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~---~d~ 338 (504)
T KOG0624|consen 263 YKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLK-NEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLD---IDP 338 (504)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh-cCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHh---cCc
Confidence 1111 1123445667777777777665 3322112 2344556677778899999998888874 556
Q ss_pred C-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 042546 549 W-HTTYEELIKNLLVQRGFKDALSLLCLMKDH 579 (671)
Q Consensus 549 ~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 579 (671)
+ ..++.--..+|.-...+++|++=|+...+.
T Consensus 339 ~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~ 370 (504)
T KOG0624|consen 339 DDVQVLCDRAEAYLGDEMYDDAIHDYEKALEL 370 (504)
T ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 5 777877788888888999999999988764
No 197
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=95.70 E-value=0.18 Score=47.77 Aligned_cols=96 Identities=13% Similarity=-0.003 Sum_probs=55.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH-------hcCChHHHHHHHHHhhhCCCCCHHHHHH
Q 042546 549 WHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPFIKYVS-------KSGTSDDAIAFLKGMTSKRFPSMSVVLC 621 (671)
Q Consensus 549 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~t~~~~l~-------~~g~~~~A~~~~~~m~~~~~p~~~~~~~ 621 (671)
|...|-.|-..|...|+.+.|..-|....+ +.|+...+..+|+ ......++..+|+++...++.|...-..
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~r--L~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~l 232 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALR--LAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSL 232 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHH
Confidence 455666666666666666666666665553 3444433322221 1223445666666666666666666666
Q ss_pred HHHHHHHcCCHHHHHHHHHhchHhh
Q 042546 622 LFAAFFQARRHSEAQDLLSKCPRYV 646 (671)
Q Consensus 622 l~~~~~~~g~~~~A~~~~~~m~~~~ 646 (671)
|...+...|++.+|...|+.|.+..
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~l 257 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDLL 257 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcC
Confidence 6666777777777777777666544
No 198
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=95.65 E-value=1.9 Score=45.14 Aligned_cols=89 Identities=17% Similarity=0.090 Sum_probs=56.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHH-----
Q 042546 477 GDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHT----- 551 (671)
Q Consensus 477 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~----- 551 (671)
+..+...+-..+-+...+.-|-++|..|-. ...+++.....+++++|..+-+..++ ..||+.
T Consensus 746 ere~l~~~a~ylk~l~~~gLAaeIF~k~gD----------~ksiVqlHve~~~W~eAFalAe~hPe---~~~dVy~pyaq 812 (1081)
T KOG1538|consen 746 EREPLLLCATYLKKLDSPGLAAEIFLKMGD----------LKSLVQLHVETQRWDEAFALAEKHPE---FKDDVYMPYAQ 812 (1081)
T ss_pred hhhHHHHHHHHHhhccccchHHHHHHHhcc----------HHHHhhheeecccchHhHhhhhhCcc---ccccccchHHH
Confidence 334455555555666677777888877754 24567777778888888888777654 344433
Q ss_pred ------HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 042546 552 ------TYEELIKNLLVQRGFKDALSLLCLMKD 578 (671)
Q Consensus 552 ------~~~~li~~~~~~g~~~~A~~l~~~m~~ 578 (671)
-|..--.+|.++|+-.+|.++++++..
T Consensus 813 wLAE~DrFeEAqkAfhkAGr~~EA~~vLeQLtn 845 (1081)
T KOG1538|consen 813 WLAENDRFEEAQKAFHKAGRQREAVQVLEQLTN 845 (1081)
T ss_pred HhhhhhhHHHHHHHHHHhcchHHHHHHHHHhhh
Confidence 222333456677777777777777654
No 199
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.52 E-value=0.36 Score=41.75 Aligned_cols=56 Identities=16% Similarity=0.177 Sum_probs=48.2
Q ss_pred HHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhchH
Q 042546 589 IKYVSKSGTSDDAIAFLKGMTSKRFPSMSVVLCLFAAFFQARRHSEAQDLLSKCPR 644 (671)
Q Consensus 589 ~~~l~~~g~~~~A~~~~~~m~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 644 (671)
...+...|++++|....+.+....|.+...|..++.+|.+.|+..+|.+.|+++..
T Consensus 69 ~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 69 AEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 44456789999999999999999999999999999999999999999999999765
No 200
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.52 E-value=0.2 Score=47.34 Aligned_cols=101 Identities=13% Similarity=0.041 Sum_probs=76.8
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 042546 418 LISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKA 497 (671)
Q Consensus 418 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a 497 (671)
..+.+++.+|...|.+.++.. +-|.+-|..=..+|++.|.++.|++=.+...... .--..+|..|-.+|...|++++|
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHccCcHHHH
Confidence 367788899999998888764 4566777777888999999998888887776542 12346788888888889999999
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHH
Q 042546 498 ADCFQKMVEKEGTSHAGYAIDLLVNT 523 (671)
Q Consensus 498 ~~~~~~m~~~~g~~p~~~~~~~li~~ 523 (671)
.+.|++..+ +.|+-.+|-.=+..
T Consensus 169 ~~aykKaLe---ldP~Ne~~K~nL~~ 191 (304)
T KOG0553|consen 169 IEAYKKALE---LDPDNESYKSNLKI 191 (304)
T ss_pred HHHHHhhhc---cCCCcHHHHHHHHH
Confidence 888888755 77887777654443
No 201
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=95.49 E-value=0.081 Score=38.69 Aligned_cols=62 Identities=11% Similarity=0.062 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHH
Q 042546 409 AMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAG-KKDEANEFMDHMEA 471 (671)
Q Consensus 409 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~ 471 (671)
.+|..+-..+...|++++|+..|++..+.. +.+...|..+..+|.+.| ++++|++.+++..+
T Consensus 4 ~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 4 EAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 345555555666666666666666665543 334455555556666666 46666666655543
No 202
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.36 E-value=2.4 Score=39.46 Aligned_cols=129 Identities=12% Similarity=0.080 Sum_probs=61.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH-----
Q 042546 412 NSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIK----- 486 (671)
Q Consensus 412 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~----- 486 (671)
+.++..+.-.|.+.-....+++..+..-+.++.....|.+.-.+.|+.+.|...|++..+..-..|..+++.++.
T Consensus 181 y~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~ 260 (366)
T KOG2796|consen 181 YSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAF 260 (366)
T ss_pred HHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhh
Confidence 344444444455555555555555544344555555566666666666666666665554333334333333322
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 042546 487 GHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVR 542 (671)
Q Consensus 487 ~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 542 (671)
.|.-++++..|...+.++.....-.|-..---+|+..| .|+..+|.+.++.|..
T Consensus 261 i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllY--lg~l~DAiK~~e~~~~ 314 (366)
T KOG2796|consen 261 LHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLY--LGKLKDALKQLEAMVQ 314 (366)
T ss_pred heecccchHHHHHHHhhccccCCCchhhhchHHHHHHH--HHHHHHHHHHHHHHhc
Confidence 22333445555555554443122222222222333333 3566666666666654
No 203
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.22 E-value=0.15 Score=44.20 Aligned_cols=69 Identities=16% Similarity=0.212 Sum_probs=43.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-----HCCCCCCHHH
Q 042546 411 LNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHME-----ASGSDVGDKM 480 (671)
Q Consensus 411 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~-----~~g~~~~~~~ 480 (671)
...++..+...|++++|.++...+.... +-|...|..+|.+|...|+..+|.++|+.+. +.|+.|+..+
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 4556666677777888887777777655 4566777777777777777777777777663 3466666544
No 204
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.16 E-value=1 Score=38.45 Aligned_cols=127 Identities=13% Similarity=0.048 Sum_probs=88.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 042546 411 LNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCV 490 (671)
Q Consensus 411 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~ 490 (671)
...+|..+...+.......+++.+...+ ..+....|.++..|++.+ .++..+.+.. ..+......++..|.+
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~ 81 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEK 81 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHH
Confidence 4567777777888999999999988776 467788999999998764 3444444442 2344455668888888
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 042546 491 AGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSK-NRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLV 562 (671)
Q Consensus 491 ~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~ 562 (671)
.+.++++.-++.++.. +...++.+... ++.+.|.+++.+-. +...|..++..+..
T Consensus 82 ~~l~~~~~~l~~k~~~----------~~~Al~~~l~~~~d~~~a~~~~~~~~-------~~~lw~~~~~~~l~ 137 (140)
T smart00299 82 AKLYEEAVELYKKDGN----------FKDAIVTLIEHLGNYEKAIEYFVKQN-------NPELWAEVLKALLD 137 (140)
T ss_pred cCcHHHHHHHHHhhcC----------HHHHHHHHHHcccCHHHHHHHHHhCC-------CHHHHHHHHHHHHc
Confidence 8888888888887754 33344444444 78888888776521 45677777776653
No 205
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.13 E-value=0.95 Score=47.70 Aligned_cols=116 Identities=12% Similarity=0.085 Sum_probs=62.4
Q ss_pred cCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHH-HHHhcCCHHHHHHHHHHHHhCCC-CCCHHH---H--HHHHHhcCChH
Q 042546 527 KNRAIDACKFVHNCVREYDLKPWHTTYEELIK-NLLVQRGFKDALSLLCLMKDHGF-PPFVDP---F--IKYVSKSGTSD 599 (671)
Q Consensus 527 ~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~-~~~~~g~~~~A~~l~~~m~~~~~-~p~~~t---~--~~~l~~~g~~~ 599 (671)
....+.|.++++.+..+ -|+...|...-. .+...|++++|++.|++...... -|.... | ...+.-.++++
T Consensus 246 ~~~~~~a~~lL~~~~~~---yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~ 322 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKR---YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWE 322 (468)
T ss_pred CCCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHH
Confidence 34566677777777654 356555543332 23446777777777775542110 010011 1 22234567777
Q ss_pred HHHHHHHHhhhCCCCCHHHHHHHH-HHHHHcCCH-------HHHHHHHHhchHh
Q 042546 600 DAIAFLKGMTSKRFPSMSVVLCLF-AAFFQARRH-------SEAQDLLSKCPRY 645 (671)
Q Consensus 600 ~A~~~~~~m~~~~~p~~~~~~~l~-~~~~~~g~~-------~~A~~~~~~m~~~ 645 (671)
+|...|..+.+...-+...|.-+. -++...|+. ++|.++|.+.|..
T Consensus 323 ~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 323 EAAEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHH
Confidence 777777777765443444444332 334456666 7777777777654
No 206
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.12 E-value=0.5 Score=44.14 Aligned_cols=118 Identities=11% Similarity=0.003 Sum_probs=61.7
Q ss_pred CCCHHHHHHHHHHHHh-----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 042546 405 VLTDAMLNSVLKALIS-----VGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDK 479 (671)
Q Consensus 405 ~~~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~ 479 (671)
.-|..+|-+++..+.. .+.++-....++.|.+-|+..|..+|+.||+.+-+..- .|..+
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkf----------------iP~nv 127 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKF----------------IPQNV 127 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCccccc----------------ccHHH
Confidence 3344455555544432 24455555555556666666666666665554433211 11111
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHH
Q 042546 480 MWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNR-AIDACKFVHNCVR 542 (671)
Q Consensus 480 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~ 542 (671)
.-..++ .|- .+-+-+.+++++|.. .|+.||..+-..|++++++.+- ..+..++.--|.+
T Consensus 128 fQ~~F~-HYP--~QQ~C~I~vLeqME~-hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmPk 187 (406)
T KOG3941|consen 128 FQKVFL-HYP--QQQNCAIKVLEQMEW-HGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMPK 187 (406)
T ss_pred HHHHHh-hCc--hhhhHHHHHHHHHHH-cCCCCchHHHHHHHHHhccccccHHHHHHHHHhhhh
Confidence 111111 111 122446778888887 8888888888888888877664 3344455555543
No 207
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=95.10 E-value=0.44 Score=45.61 Aligned_cols=92 Identities=15% Similarity=0.124 Sum_probs=43.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HHHHH
Q 042546 411 LNSVLKALISVGRMGECNKILKAMEEGGFIASS----NMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVG----DKMWV 482 (671)
Q Consensus 411 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~----~~~~~ 482 (671)
|...+..+.+.|++++|...|+.+.+.- |+. ..+-.+...|...|++++|...|+.+.+.- |+ ...+-
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~y--P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~y--P~s~~~~dAl~ 221 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKY--PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNY--PKSPKAADAMF 221 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCCcchhHHHH
Confidence 4444444444566666666666655432 222 244445555555555555555555554331 21 12222
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHH
Q 042546 483 SLIKGHCVAGDLDKAADCFQKMVE 506 (671)
Q Consensus 483 ~li~~~~~~g~~~~a~~~~~~m~~ 506 (671)
.+...+...|+.++|.++|+...+
T Consensus 222 klg~~~~~~g~~~~A~~~~~~vi~ 245 (263)
T PRK10803 222 KVGVIMQDKGDTAKAKAVYQQVIK 245 (263)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Confidence 233334445555555555554444
No 208
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=95.07 E-value=8.1 Score=43.99 Aligned_cols=156 Identities=13% Similarity=0.072 Sum_probs=100.7
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH----HHhcCCHHH
Q 042546 421 VGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKG----HCVAGDLDK 496 (671)
Q Consensus 421 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~----~~~~g~~~~ 496 (671)
.+++++|+.-+.++. ...|.-.++.--++|.+.+|+.++ .|+...+.-+..+ +.....+++
T Consensus 893 L~ry~~AL~hLs~~~-------~~~~~e~~n~I~kh~Ly~~aL~ly--------~~~~e~~k~i~~~ya~hL~~~~~~~~ 957 (1265)
T KOG1920|consen 893 LKRYEDALSHLSECG-------ETYFPECKNYIKKHGLYDEALALY--------KPDSEKQKVIYEAYADHLREELMSDE 957 (1265)
T ss_pred HHHHHHHHHHHHHcC-------ccccHHHHHHHHhcccchhhhhee--------ccCHHHHHHHHHHHHHHHHHhccccH
Confidence 345566665555443 123334444455677778877776 5666555554444 455677788
Q ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHH
Q 042546 497 AADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHT--TYEELIKNLLVQRGFKDALSLLC 574 (671)
Q Consensus 497 a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~--~~~~li~~~~~~g~~~~A~~l~~ 574 (671)
|.-.|+..-+ ..--+.+|-.+|++.+|..+-.++... -|.. +-..|+.-+...++.-+|-++..
T Consensus 958 Aal~Ye~~Gk----------lekAl~a~~~~~dWr~~l~~a~ql~~~----~de~~~~a~~L~s~L~e~~kh~eAa~il~ 1023 (1265)
T KOG1920|consen 958 AALMYERCGK----------LEKALKAYKECGDWREALSLAAQLSEG----KDELVILAEELVSRLVEQRKHYEAAKILL 1023 (1265)
T ss_pred HHHHHHHhcc----------HHHHHHHHHHhccHHHHHHHHHhhcCC----HHHHHHHHHHHHHHHHHcccchhHHHHHH
Confidence 8777776543 223566788889999998888877531 1222 22567777888888888888887
Q ss_pred HHHhCCCCCCHHHHHHHHHhcCChHHHHHHHHHhhh
Q 042546 575 LMKDHGFPPFVDPFIKYVSKSGTSDDAIAFLKGMTS 610 (671)
Q Consensus 575 ~m~~~~~~p~~~t~~~~l~~~g~~~~A~~~~~~m~~ 610 (671)
+... |..--+..||+...+++|.++.....+
T Consensus 1024 e~~s-----d~~~av~ll~ka~~~~eAlrva~~~~~ 1054 (1265)
T KOG1920|consen 1024 EYLS-----DPEEAVALLCKAKEWEEALRVASKAKR 1054 (1265)
T ss_pred HHhc-----CHHHHHHHHhhHhHHHHHHHHHHhccc
Confidence 7642 334557788888899999887665443
No 209
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=95.07 E-value=0.13 Score=37.53 Aligned_cols=63 Identities=16% Similarity=0.189 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHH
Q 042546 443 SNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAG-DLDKAADCFQKMVE 506 (671)
Q Consensus 443 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~ 506 (671)
..+|..+...+.+.|++++|+..|.+..+.. +-+...|..+-.+|.+.| ++++|.+.+++..+
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 4556666666666666666666666666553 224455666666666666 56666666666544
No 210
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=95.05 E-value=0.18 Score=37.32 Aligned_cols=56 Identities=16% Similarity=0.067 Sum_probs=39.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 042546 416 KALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEAS 472 (671)
Q Consensus 416 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 472 (671)
..|.+.+++++|.++++.+.+.+ +.+...|......+.+.|++++|.+.|+...+.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 35667777777777777777664 445566666777777777777777777777665
No 211
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=95.02 E-value=2.2 Score=37.35 Aligned_cols=133 Identities=8% Similarity=0.071 Sum_probs=60.0
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHH
Q 042546 322 KVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRE 401 (671)
Q Consensus 322 ~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~ 401 (671)
+.++.+.+.++.|+...+..+|+.+.+.|++..-. .+...++-||.......+-.+.....+-...+..++.++..
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~----qllq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~~ 90 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLH----QLLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLGT 90 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH----HHHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhhh
Confidence 34444555666666666666666666666544332 23334444444333332222211111112222222222210
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 042546 402 NGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHME 470 (671)
Q Consensus 402 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 470 (671)
.+..++..+...|++-+|.++.+.... .+......++.+-.+.++...=..+|+-..
T Consensus 91 --------~~~~iievLL~~g~vl~ALr~ar~~~~----~~~~~~~~fLeAA~~~~D~~lf~~V~~ff~ 147 (167)
T PF07035_consen 91 --------AYEEIIEVLLSKGQVLEALRYARQYHK----VDSVPARKFLEAAANSNDDQLFYAVFRFFE 147 (167)
T ss_pred --------hHHHHHHHHHhCCCHHHHHHHHHHcCC----cccCCHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 144555666666666666666655431 112222334444445555444444444433
No 212
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=95.02 E-value=2.2 Score=39.25 Aligned_cols=48 Identities=15% Similarity=0.164 Sum_probs=33.1
Q ss_pred HHHHHhcCChHHHHHHHHHhhhCCCCC---HHHHHHHHHHHHHcCCHHHHH
Q 042546 589 IKYVSKSGTSDDAIAFLKGMTSKRFPS---MSVVLCLFAAFFQARRHSEAQ 636 (671)
Q Consensus 589 ~~~l~~~g~~~~A~~~~~~m~~~~~p~---~~~~~~l~~~~~~~g~~~~A~ 636 (671)
...|-+.|.+..|..-++.+.+.-+.+ ......++.+|.+.|..+.|.
T Consensus 148 a~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 148 ARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 566678888888888888888864422 234566788888888877544
No 213
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.82 E-value=7.1 Score=42.07 Aligned_cols=101 Identities=13% Similarity=0.186 Sum_probs=57.9
Q ss_pred cCCCCCHHHHH-----HHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-CcccHHHHHHHHHHHHHcC
Q 042546 330 KGYEMEMETCV-----KVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVS-KQLDMRLFSKVVRVFRENG 403 (671)
Q Consensus 330 ~g~~p~~~t~~-----~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~-~~~~~~~~~~~~~~~~~~~ 403 (671)
-|++.+..-|. .+|+-+...+.+..|+++-..+...-..- ...|.....-+.+. ...|...+..+-+++...
T Consensus 426 ~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~- 503 (829)
T KOG2280|consen 426 IGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAK- 503 (829)
T ss_pred cCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhccc-
Confidence 45555544443 35677777788888888877775321111 44455555445444 333445555555554432
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 042546 404 NVLTDAMLNSVLKALISVGRMGECNKILKA 433 (671)
Q Consensus 404 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 433 (671)
. .+...|..+..-.-.+|+.+-|..+++.
T Consensus 504 ~-~~~iSy~~iA~~Ay~~GR~~LA~kLle~ 532 (829)
T KOG2280|consen 504 L-TPGISYAAIARRAYQEGRFELARKLLEL 532 (829)
T ss_pred C-CCceeHHHHHHHHHhcCcHHHHHHHHhc
Confidence 2 3334566666666678888888777654
No 214
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=94.61 E-value=0.69 Score=44.32 Aligned_cols=98 Identities=14% Similarity=0.038 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-CHHHHH
Q 042546 444 NMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGD----KMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSH-AGYAID 518 (671)
Q Consensus 444 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p-~~~~~~ 518 (671)
..|...+..+.+.|++++|...|+.+.+. .|+. ..+-.+...|...|++++|...|+.+.+...-.| ....+-
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~ 221 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF 221 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence 34555454445567777777777777665 2332 3455666666777777777777777764211111 122233
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHh
Q 042546 519 LLVNTYCSKNRAIDACKFVHNCVRE 543 (671)
Q Consensus 519 ~li~~~~~~g~~~~A~~~~~~m~~~ 543 (671)
.+...|...|+.++|.++|+.+.+.
T Consensus 222 klg~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 222 KVGVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3444555667777777777666653
No 215
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=94.37 E-value=5.4 Score=38.81 Aligned_cols=218 Identities=10% Similarity=0.059 Sum_probs=127.0
Q ss_pred HhcCCHHHHHHHHHHHHHCC--CCCCH------HHHHHHHHHHHhcCCHHHHHHHHHHHHHC--------CCCCCH----
Q 042546 419 ISVGRMGECNKILKAMEEGG--FIASS------NMKSKIAFRLSSAGKKDEANEFMDHMEAS--------GSDVGD---- 478 (671)
Q Consensus 419 ~~~g~~~~A~~~~~~m~~~g--~~~~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~--------g~~~~~---- 478 (671)
.+.|+.+.|...+.+..... ..|+. ..||.=.+.+.+..++++|...+++..+. ...|+.
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 46788888888888776532 23332 34454444444443887777766654322 123333
Q ss_pred -HHHHHHHHHHHhcCCH---HHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHH
Q 042546 479 -KMWVSLIKGHCVAGDL---DKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYE 554 (671)
Q Consensus 479 -~~~~~li~~~~~~g~~---~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~ 554 (671)
.+...++.+|...+.. ++|..+++.+....+-+|. ++..-+..+.+.++.+++.+++.+|... +.-....+.
T Consensus 84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~--~~~L~l~il~~~~~~~~~~~~L~~mi~~--~~~~e~~~~ 159 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPE--VFLLKLEILLKSFDEEEYEEILMRMIRS--VDHSESNFD 159 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcH--HHHHHHHHHhccCChhHHHHHHHHHHHh--cccccchHH
Confidence 4567778888877764 4566677777653343343 4545566666689999999999999874 332334455
Q ss_pred HHHHHH---HhcCCHHHHHHHHHHHHhCCCCCCHHHH--------HHHHHhc------CChHHHHHHHHHhhh--CCCCC
Q 042546 555 ELIKNL---LVQRGFKDALSLLCLMKDHGFPPFVDPF--------IKYVSKS------GTSDDAIAFLKGMTS--KRFPS 615 (671)
Q Consensus 555 ~li~~~---~~~g~~~~A~~l~~~m~~~~~~p~~~t~--------~~~l~~~------g~~~~A~~~~~~m~~--~~~p~ 615 (671)
.++..+ ... ....|...+..+....+.|....+ +-..... ++++....+++.+.. ..+.+
T Consensus 160 ~~l~~i~~l~~~-~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls 238 (278)
T PF08631_consen 160 SILHHIKQLAEK-SPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLS 238 (278)
T ss_pred HHHHHHHHHHhh-CcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCC
Confidence 555554 333 345677777777666666665412 1111121 225556666664444 23344
Q ss_pred HHHHHHH-------HHHHHHcCCHHHHHHHHHh
Q 042546 616 MSVVLCL-------FAAFFQARRHSEAQDLLSK 641 (671)
Q Consensus 616 ~~~~~~l-------~~~~~~~g~~~~A~~~~~~ 641 (671)
..+-.++ ...+.+.+++++|.++|+-
T Consensus 239 ~~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~ 271 (278)
T PF08631_consen 239 AEAASAIHTLLWNKGKKHYKAKNYDEAIEWYEL 271 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHH
Confidence 4443332 2445668889999988874
No 216
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=94.35 E-value=6.4 Score=39.54 Aligned_cols=93 Identities=18% Similarity=0.174 Sum_probs=59.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 042546 412 NSVLKALISVGRMGECNKILKAMEEGG---FIASSNMKSKIAFRLSS---AGKKDEANEFMDHMEASGSDVGDKMWVSLI 485 (671)
Q Consensus 412 ~~li~~~~~~g~~~~A~~~~~~m~~~g---~~~~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~~~~~~~~~li 485 (671)
-.++-+|-...+++...++.+.|...- +.-....--...-++-+ .|+.++|++++..+....-.++..+|..+.
T Consensus 145 ~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~G 224 (374)
T PF13281_consen 145 INLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLG 224 (374)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHH
Confidence 345556888888999999999888631 11122222234445556 888999999988866555577777877776
Q ss_pred HHHHh---------cCCHHHHHHHHHHH
Q 042546 486 KGHCV---------AGDLDKAADCFQKM 504 (671)
Q Consensus 486 ~~~~~---------~g~~~~a~~~~~~m 504 (671)
..|-. ....++|...|.+.
T Consensus 225 RIyKD~~~~s~~~d~~~ldkAi~~Y~kg 252 (374)
T PF13281_consen 225 RIYKDLFLESNFTDRESLDKAIEWYRKG 252 (374)
T ss_pred HHHHHHHHHcCccchHHHHHHHHHHHHH
Confidence 65532 12355666666655
No 217
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.27 E-value=9.4 Score=41.18 Aligned_cols=126 Identities=16% Similarity=0.144 Sum_probs=89.0
Q ss_pred HHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 042546 500 CFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDH 579 (671)
Q Consensus 500 ~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 579 (671)
+.+.+..+.|..-...+.+--+.-+..-|+..+|.++-.+.+ -||...|-.=+.+++..+++++-+++-+.++.
T Consensus 670 lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk-----ipdKr~~wLk~~aLa~~~kweeLekfAkskks- 743 (829)
T KOG2280|consen 670 LQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK-----IPDKRLWWLKLTALADIKKWEELEKFAKSKKS- 743 (829)
T ss_pred HHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC-----CcchhhHHHHHHHHHhhhhHHHHHHHHhccCC-
Confidence 333343334433333445555566677899999988776553 37888888888999999999998888777652
Q ss_pred CCCCCHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHh
Q 042546 580 GFPPFVDPFIKYVSKSGTSDDAIAFLKGMTSKRFPSMSVVLCLFAAFFQARRHSEAQDLLSK 641 (671)
Q Consensus 580 ~~~p~~~t~~~~l~~~g~~~~A~~~~~~m~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 641 (671)
+--...|+..|.+.|+.++|.+++-+.... .-.+.+|.+.|++.+|.++--+
T Consensus 744 --PIGy~PFVe~c~~~~n~~EA~KYiprv~~l--------~ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 744 --PIGYLPFVEACLKQGNKDEAKKYIPRVGGL--------QEKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred --CCCchhHHHHHHhcccHHHHhhhhhccCCh--------HHHHHHHHHhccHHHHHHHHHH
Confidence 223356889999999999999998755431 1467889999999988876544
No 218
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=94.24 E-value=3.5 Score=43.51 Aligned_cols=118 Identities=15% Similarity=0.131 Sum_probs=76.5
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHH-HHHHhcCCHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHhcCCHHH
Q 042546 421 VGRMGECNKILKAMEEGGFIASSNMKSKIA-FRLSSAGKKDEANEFMDHMEASG---SDVGDKMWVSLIKGHCVAGDLDK 496 (671)
Q Consensus 421 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~li-~~~~~~g~~~~A~~~~~~m~~~g---~~~~~~~~~~li~~~~~~g~~~~ 496 (671)
..+.+.|.++++.+.++ -|+...|...- ..+...|++++|.+.|++..... .+.....+--+.-.+.-..++++
T Consensus 246 ~~~~~~a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~ 323 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEE 323 (468)
T ss_pred CCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHH
Confidence 45778899999998865 57777775544 34556899999999999754311 12233344445556777888888
Q ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHH-HHHhcCCH-------HHHHHHHHHHHH
Q 042546 497 AADCFQKMVEKEGTSHAGYAIDLLVN-TYCSKNRA-------IDACKFVHNCVR 542 (671)
Q Consensus 497 a~~~~~~m~~~~g~~p~~~~~~~li~-~~~~~g~~-------~~A~~~~~~m~~ 542 (671)
|.+.|..+.+.... +..+|.-+.. ++...|+. ++|.++|.+...
T Consensus 324 A~~~f~~L~~~s~W--Ska~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 324 AAEYFLRLLKESKW--SKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHHHHHhcccc--HHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 88888888873333 3333333332 24456666 777777776653
No 219
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=94.24 E-value=2.6 Score=41.14 Aligned_cols=49 Identities=10% Similarity=0.277 Sum_probs=33.8
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh--C----CChHHHHHHHHHHHhC
Q 042546 317 IDRFWKVLDEMRSKGYEMEMETCVKVLGRFSE--R----NMVKEAVDLYEFAMAC 365 (671)
Q Consensus 317 ~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~--~----g~~~~a~~l~~~m~~~ 365 (671)
+++...+++.|.+.|++-+..+|-+....... . ....+|..+|+.|++.
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~ 132 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKK 132 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHh
Confidence 45667788888888888888777664433333 2 2456788888888854
No 220
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=93.98 E-value=5.9 Score=37.80 Aligned_cols=143 Identities=16% Similarity=0.073 Sum_probs=81.0
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 042546 417 ALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDK 496 (671)
Q Consensus 417 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 496 (671)
.....|++.+|..+|+...... +-+...--.++.+|...|+.+.|..++..+...--.........-|..+.+.....+
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~ 221 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPE 221 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCC
Confidence 4466788888888888777654 233455666777888888888888888876543212222222222333444444444
Q ss_pred HHHHHHHHHHcCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 042546 497 AADCFQKMVEKEGTSH-AGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQR 564 (671)
Q Consensus 497 a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g 564 (671)
...+-.+.-. .| |...--.+...|...|+.++|.+.+-.+.++..-.-|...-..|+..+.--|
T Consensus 222 ~~~l~~~~aa----dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g 286 (304)
T COG3118 222 IQDLQRRLAA----DPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG 286 (304)
T ss_pred HHHHHHHHHh----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence 4444444332 23 4555555666677777777777666666554332333344455555555444
No 221
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=93.96 E-value=0.3 Score=36.70 Aligned_cols=61 Identities=16% Similarity=0.137 Sum_probs=29.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHh---CC-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 042546 516 AIDLLVNTYCSKNRAIDACKFVHNCVRE---YD-LKPW-HTTYEELIKNLLVQRGFKDALSLLCLM 576 (671)
Q Consensus 516 ~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~-~~p~-~~~~~~li~~~~~~g~~~~A~~l~~~m 576 (671)
+|+.+-..|...|++++|...|++..+. .| -.|+ ..++..+-..|...|++++|++.+++.
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~a 72 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKA 72 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3444555555555555555555544421 11 0111 234455555555666666666665554
No 222
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=93.89 E-value=2.7 Score=43.73 Aligned_cols=167 Identities=10% Similarity=0.116 Sum_probs=85.4
Q ss_pred cChHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 042546 265 FSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLG 344 (671)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~ 344 (671)
++...+..-...+.++++++.+....-.--. .-...-.+.++.-+-+.|..+.|+++-.+-..+ ..
T Consensus 261 ld~~~~~fk~av~~~d~~~v~~~i~~~~ll~--~i~~~~~~~i~~fL~~~G~~e~AL~~~~D~~~r------------Fe 326 (443)
T PF04053_consen 261 LDLSELEFKTAVLRGDFEEVLRMIAASNLLP--NIPKDQGQSIARFLEKKGYPELALQFVTDPDHR------------FE 326 (443)
T ss_dssp --HHHHHHHHHHHTT-HHH-----HHHHTGG--G--HHHHHHHHHHHHHTT-HHHHHHHSS-HHHH------------HH
T ss_pred ECHHHHHHHHHHHcCChhhhhhhhhhhhhcc--cCChhHHHHHHHHHHHCCCHHHHHhhcCChHHH------------hH
Confidence 3444444444444577777555543111000 111344667777777777777777765543322 33
Q ss_pred HHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 042546 345 RFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRM 424 (671)
Q Consensus 345 ~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 424 (671)
...+.|+++.|.++-.+. .+...|..|-+...+.|++
T Consensus 327 LAl~lg~L~~A~~~a~~~-------------------------------------------~~~~~W~~Lg~~AL~~g~~ 363 (443)
T PF04053_consen 327 LALQLGNLDIALEIAKEL-------------------------------------------DDPEKWKQLGDEALRQGNI 363 (443)
T ss_dssp HHHHCT-HHHHHHHCCCC-------------------------------------------STHHHHHHHHHHHHHTTBH
T ss_pred HHHhcCCHHHHHHHHHhc-------------------------------------------CcHHHHHHHHHHHHHcCCH
Confidence 444566666666554322 2333466777777777777
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 042546 425 GECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQK 503 (671)
Q Consensus 425 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 503 (671)
+-|++.|.+... |..|+-.|.-.|+.+.-.++.+.....|- +|....++...|++++..+++.+
T Consensus 364 ~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~------~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 364 ELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERGD------INIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp HHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred HHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHccC------HHHHHHHHHHcCCHHHHHHHHHH
Confidence 777777765442 44555666667777766666666665542 45555555556666666666554
No 223
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=93.66 E-value=3.5 Score=34.03 Aligned_cols=139 Identities=12% Similarity=0.120 Sum_probs=69.2
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 042546 420 SVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAAD 499 (671)
Q Consensus 420 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~ 499 (671)
-.|.+++..++..+... ..+..-||.+|.-....-+-+-..++++.+-+ --|. ...|++.....
T Consensus 14 ldG~V~qGveii~k~v~---Ssni~E~NWvICNiiDaa~C~yvv~~LdsIGk---iFDi----------s~C~NlKrVi~ 77 (161)
T PF09205_consen 14 LDGDVKQGVEIIEKTVN---SSNIKEYNWVICNIIDAADCDYVVETLDSIGK---IFDI----------SKCGNLKRVIE 77 (161)
T ss_dssp HTT-HHHHHHHHHHHHH---HS-HHHHTHHHHHHHHH--HHHHHHHHHHHGG---GS-G----------GG-S-THHHHH
T ss_pred HhchHHHHHHHHHHHcC---cCCccccceeeeecchhhchhHHHHHHHHHhh---hcCc----------hhhcchHHHHH
Confidence 34666677777766665 34455566555554444444444444443322 1111 22333333333
Q ss_pred HHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 042546 500 CFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDH 579 (671)
Q Consensus 500 ~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 579 (671)
.+-.+-. +......-++...+.|+-|.-.+++.++.+ +-.++....-.+..+|.+.|+..++-+++++.-+.
T Consensus 78 C~~~~n~------~se~vD~ALd~lv~~~kkDqLdki~~~l~k--n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek 149 (161)
T PF09205_consen 78 CYAKRNK------LSEYVDLALDILVKQGKKDQLDKIYNELKK--NEEINPEFLVKIANAYKKLGNTREANELLKEACEK 149 (161)
T ss_dssp HHHHTT---------HHHHHHHHHHHHTT-HHHHHHHHHHH-------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred HHHHhcc------hHHHHHHHHHHHHHhccHHHHHHHHHHHhh--ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 3333222 334455566666777777777777777653 23456666667777777777777777777777776
Q ss_pred CCC
Q 042546 580 GFP 582 (671)
Q Consensus 580 ~~~ 582 (671)
|++
T Consensus 150 G~k 152 (161)
T PF09205_consen 150 GLK 152 (161)
T ss_dssp T-H
T ss_pred chH
Confidence 653
No 224
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=93.65 E-value=8.7 Score=38.60 Aligned_cols=76 Identities=14% Similarity=0.157 Sum_probs=47.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHcCCCCCCHHHHHHHH
Q 042546 448 KIAFRLSSAGKKDEANEFMDHMEASG---SDVGDKMWVSLIKGHCV---AGDLDKAADCFQKMVEKEGTSHAGYAIDLLV 521 (671)
Q Consensus 448 ~li~~~~~~g~~~~A~~~~~~m~~~g---~~~~~~~~~~li~~~~~---~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li 521 (671)
.++-.|....+++...++.+.+...- +.-....---..-++.+ .|+.++|++++..+.. ..-.++..+|..+-
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~-~~~~~~~d~~gL~G 224 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLE-SDENPDPDTLGLLG 224 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHh-ccCCCChHHHHHHH
Confidence 44445888888999999998887531 00011111122334445 7888889888888655 45556666776665
Q ss_pred HHH
Q 042546 522 NTY 524 (671)
Q Consensus 522 ~~~ 524 (671)
..|
T Consensus 225 RIy 227 (374)
T PF13281_consen 225 RIY 227 (374)
T ss_pred HHH
Confidence 554
No 225
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=93.48 E-value=0.31 Score=36.60 Aligned_cols=61 Identities=16% Similarity=0.168 Sum_probs=36.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC----CC-CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 042546 410 MLNSVLKALISVGRMGECNKILKAMEEG----GF-IAS-SNMKSKIAFRLSSAGKKDEANEFMDHME 470 (671)
Q Consensus 410 ~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~-~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~ 470 (671)
+++.+-..|...|++++|+..|++..+. |- .|+ ..+++.+...|...|++++|++.+++..
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4666667777777777777777766532 10 111 3455666666666677776666666543
No 226
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=93.39 E-value=6.3 Score=36.21 Aligned_cols=159 Identities=11% Similarity=0.035 Sum_probs=85.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 042546 414 VLKALISVGRMGECNKILKAMEEGGF--IASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVA 491 (671)
Q Consensus 414 li~~~~~~g~~~~A~~~~~~m~~~g~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 491 (671)
....+...|++++|.+.|+.+...-- +--....-.++.++-+.|++++|...+++..+.-..-...-+...+.+.+.-
T Consensus 11 ~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~ 90 (203)
T PF13525_consen 11 KALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYY 90 (203)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHH
Confidence 34456778999999999999986521 1123455667888999999999999999987653222223344333333322
Q ss_pred CCHHHHH---HHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 042546 492 GDLDKAA---DCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKD 568 (671)
Q Consensus 492 g~~~~a~---~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~ 568 (671)
....... .=-....+ -...+..+|.-|=......+|...+..+.++. ...--.+..-|.+.|.+..
T Consensus 91 ~~~~~~~~~~~D~~~~~~------A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~l-----a~~e~~ia~~Y~~~~~y~a 159 (203)
T PF13525_consen 91 KQIPGILRSDRDQTSTRK------AIEEFEELIKRYPNSEYAEEAKKRLAELRNRL-----AEHELYIARFYYKRGKYKA 159 (203)
T ss_dssp HHHHHHH-TT---HHHHH------HHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHH-----HHHHHHHHHHHHCTT-HHH
T ss_pred HhCccchhcccChHHHHH------HHHHHHHHHHHCcCchHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHcccHHH
Confidence 1111110 00000000 12244555666666666666666665554420 0111224455777777777
Q ss_pred HHHHHHHHHhCCCCCCH
Q 042546 569 ALSLLCLMKDHGFPPFV 585 (671)
Q Consensus 569 A~~l~~~m~~~~~~p~~ 585 (671)
|..-++.+.+. -|+.
T Consensus 160 A~~r~~~v~~~--yp~t 174 (203)
T PF13525_consen 160 AIIRFQYVIEN--YPDT 174 (203)
T ss_dssp HHHHHHHHHHH--STTS
T ss_pred HHHHHHHHHHH--CCCC
Confidence 77777777654 4444
No 227
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=93.38 E-value=3.9 Score=33.75 Aligned_cols=61 Identities=23% Similarity=0.352 Sum_probs=28.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 042546 412 NSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASG 473 (671)
Q Consensus 412 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 473 (671)
+..++...+.|+-+.-.++..++.+.+ .+++...-.+..+|.+.|+..++.+++.+.-+.|
T Consensus 90 D~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 90 DLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 334444455555555555555554322 3455555555555555555555555555555554
No 228
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=93.20 E-value=19 Score=41.20 Aligned_cols=132 Identities=15% Similarity=0.119 Sum_probs=80.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHH----HHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 042546 481 WVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLV----NTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEEL 556 (671)
Q Consensus 481 ~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li----~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~l 556 (671)
|.-.+..--+.|.+++|+.++. |+...+..+. +-+...+.+++|.-.|+..-+- .--
T Consensus 911 ~~e~~n~I~kh~Ly~~aL~ly~---------~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gkl----------ekA 971 (1265)
T KOG1920|consen 911 FPECKNYIKKHGLYDEALALYK---------PDSEKQKVIYEAYADHLREELMSDEAALMYERCGKL----------EKA 971 (1265)
T ss_pred cHHHHHHHHhcccchhhhheec---------cCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhccH----------HHH
Confidence 3334444455666666665543 4554544444 4445678888888888765321 135
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCH-----HHHHHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCC
Q 042546 557 IKNLLVQRGFKDALSLLCLMKDHGFPPFV-----DPFIKYVSKSGTSDDAIAFLKGMTSKRFPSMSVVLCLFAAFFQARR 631 (671)
Q Consensus 557 i~~~~~~g~~~~A~~l~~~m~~~~~~p~~-----~t~~~~l~~~g~~~~A~~~~~~m~~~~~p~~~~~~~l~~~~~~~g~ 631 (671)
+.+|..+|+|.+|+.+..++.. .-|. ..++.-+...++.-+|-++..+.... +.--+..|++...
T Consensus 972 l~a~~~~~dWr~~l~~a~ql~~---~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd-------~~~av~ll~ka~~ 1041 (1265)
T KOG1920|consen 972 LKAYKECGDWREALSLAAQLSE---GKDELVILAEELVSRLVEQRKHYEAAKILLEYLSD-------PEEAVALLCKAKE 1041 (1265)
T ss_pred HHHHHHhccHHHHHHHHHhhcC---CHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC-------HHHHHHHHhhHhH
Confidence 6788889999999999888752 1121 23455666778877777777766553 2233455666667
Q ss_pred HHHHHHHHHh
Q 042546 632 HSEAQDLLSK 641 (671)
Q Consensus 632 ~~~A~~~~~~ 641 (671)
|++|.++-..
T Consensus 1042 ~~eAlrva~~ 1051 (1265)
T KOG1920|consen 1042 WEEALRVASK 1051 (1265)
T ss_pred HHHHHHHHHh
Confidence 7777665544
No 229
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=93.03 E-value=6.8 Score=37.52 Aligned_cols=30 Identities=13% Similarity=0.201 Sum_probs=13.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 042546 477 GDKMWVSLIKGHCVAGDLDKAADCFQKMVE 506 (671)
Q Consensus 477 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 506 (671)
|...|-.|-..|...|+.+.|..-|....+
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~r 184 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALR 184 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 334444444444444444444444444443
No 230
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=92.94 E-value=12 Score=37.97 Aligned_cols=130 Identities=11% Similarity=0.011 Sum_probs=101.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH----HH
Q 042546 515 YAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPF----IK 590 (671)
Q Consensus 515 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~t~----~~ 590 (671)
.+|...++.-.+...++.|..+|-+..+..-+.+++..++++|.-++ .|+..-|..+|+.-.. ..||...| +.
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~--~f~d~~~y~~kyl~ 474 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLL--KFPDSTLYKEKYLL 474 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHH--hCCCchHHHHHHHH
Confidence 45677888888888899999999999875327888999999998665 5777889999986543 25776555 55
Q ss_pred HHHhcCChHHHHHHHHHhhhCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHhchHhhh
Q 042546 591 YVSKSGTSDDAIAFLKGMTSKRFPS--MSVVLCLFAAFFQARRHSEAQDLLSKCPRYVR 647 (671)
Q Consensus 591 ~l~~~g~~~~A~~~~~~m~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 647 (671)
.+...++-+.|..+|+....+...+ ...|..+|+-=..-|+...|..+=+.|.+..+
T Consensus 475 fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~p 533 (660)
T COG5107 475 FLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVP 533 (660)
T ss_pred HHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcC
Confidence 5678899999999999766654333 67899999999999999998888777765443
No 231
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=92.71 E-value=2.2 Score=43.49 Aligned_cols=66 Identities=14% Similarity=0.025 Sum_probs=57.2
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 042546 405 VLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASS----NMKSKIAFRLSSAGKKDEANEFMDHMEAS 472 (671)
Q Consensus 405 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 472 (671)
+.+...++.+-.+|.+.|++++|...|++..+.. |+. .+|..+..+|.+.|+.++|++.+++..+.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~--Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALELN--PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4455689999999999999999999999988764 553 46899999999999999999999998875
No 232
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=92.64 E-value=5 Score=41.20 Aligned_cols=60 Identities=12% Similarity=0.050 Sum_probs=43.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 042546 482 VSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCV 541 (671)
Q Consensus 482 ~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 541 (671)
..+-.++-+.|+.++|.+.+++|.+.....-+..+...|+.++...+.+.++..++.+-.
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYd 322 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYD 322 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence 345555667788888888888887623333344566778888888888888888888764
No 233
>PRK15331 chaperone protein SicA; Provisional
Probab=92.43 E-value=4.9 Score=34.87 Aligned_cols=84 Identities=10% Similarity=-0.051 Sum_probs=68.2
Q ss_pred CCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHH
Q 042546 278 GDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVD 357 (671)
Q Consensus 278 ~~~~~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~ 357 (671)
.|++++|..+|.-+..-. .-|..-|..|-..+-..+++++|...|...-..+. -|...+-.+-.++...|+.+.|+.
T Consensus 50 ~Gk~~eA~~~F~~L~~~d--~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~~~A~~ 126 (165)
T PRK15331 50 QGRLDEAETFFRFLCIYD--FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKAAKARQ 126 (165)
T ss_pred CCCHHHHHHHHHHHHHhC--cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCHHHHHH
Confidence 499999999999887533 45666788888889999999999999988766543 255556667788999999999999
Q ss_pred HHHHHHh
Q 042546 358 LYEFAMA 364 (671)
Q Consensus 358 l~~~m~~ 364 (671)
.|.....
T Consensus 127 ~f~~a~~ 133 (165)
T PRK15331 127 CFELVNE 133 (165)
T ss_pred HHHHHHh
Confidence 9998876
No 234
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=92.37 E-value=6.3 Score=33.56 Aligned_cols=43 Identities=5% Similarity=0.153 Sum_probs=21.4
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 042546 305 NAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSE 348 (671)
Q Consensus 305 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~ 348 (671)
..+|..+.+.+.......+++.+...+. .+...++.++..|++
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~ 53 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAK 53 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHH
Confidence 3445555555555555555555554442 344455555555544
No 235
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=92.10 E-value=2.1 Score=43.64 Aligned_cols=65 Identities=14% Similarity=0.031 Sum_probs=54.9
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 042546 475 DVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAG----YAIDLLVNTYCSKNRAIDACKFVHNCVR 542 (671)
Q Consensus 475 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~ 542 (671)
+.+...|+.+..+|.+.|++++|...|++..+ +.|+. .+|..+..+|.+.|+.++|...+++..+
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALe---L~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALE---LNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---hCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34567889999999999999999999999877 45663 3588899999999999999999999876
No 236
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=92.04 E-value=5 Score=34.66 Aligned_cols=110 Identities=13% Similarity=0.020 Sum_probs=59.3
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 042546 489 CVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKD 568 (671)
Q Consensus 489 ~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~ 568 (671)
.+.++.+++..++..+.--..-.|...++...+ +.+.|++++|.++|+++..+ .|....-.+|+..|....+=..
T Consensus 21 l~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l--~i~r~~w~dA~rlLr~l~~~---~~~~p~~kALlA~CL~~~~D~~ 95 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVLRPEFPELDLFDGWL--HIVRGDWDDALRLLRELEER---APGFPYAKALLALCLYALGDPS 95 (160)
T ss_pred HccCChHHHHHHHHHHHHhCCCchHHHHHHHHH--HHHhCCHHHHHHHHHHHhcc---CCCChHHHHHHHHHHHHcCChH
Confidence 456677777777777754222223333444433 34678888888888887653 2333333445444444332222
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHhcCChHHHHH
Q 042546 569 ALSLLCLMKDHGFPPFVDPFIKYVSKSGTSDDAIA 603 (671)
Q Consensus 569 A~~l~~~m~~~~~~p~~~t~~~~l~~~g~~~~A~~ 603 (671)
=...-+++.+.+-.|+...++..+........|..
T Consensus 96 Wr~~A~evle~~~d~~a~~Lv~~Ll~~~~~~~a~~ 130 (160)
T PF09613_consen 96 WRRYADEVLESGADPDARALVRALLARADLEPAHE 130 (160)
T ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHhccccchhh
Confidence 22233445666666777777666655544444444
No 237
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=91.93 E-value=3.7 Score=42.69 Aligned_cols=130 Identities=16% Similarity=0.148 Sum_probs=83.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 042546 411 LNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCV 490 (671)
Q Consensus 411 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~ 490 (671)
.+.++.-+-+.|..+.|+++-..-.. -.....+.|+++.|.++-++ ..+...|..|-....+
T Consensus 298 ~~~i~~fL~~~G~~e~AL~~~~D~~~------------rFeLAl~lg~L~~A~~~a~~------~~~~~~W~~Lg~~AL~ 359 (443)
T PF04053_consen 298 GQSIARFLEKKGYPELALQFVTDPDH------------RFELALQLGNLDIALEIAKE------LDDPEKWKQLGDEALR 359 (443)
T ss_dssp HHHHHHHHHHTT-HHHHHHHSS-HHH------------HHHHHHHCT-HHHHHHHCCC------CSTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHhhcCChHH------------HhHHHHhcCCHHHHHHHHHh------cCcHHHHHHHHHHHHH
Confidence 56677777777888888776543321 23344568888888776543 3466788888888888
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 042546 491 AGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDAL 570 (671)
Q Consensus 491 ~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 570 (671)
.|+++-|++.|.+... |..|+-.|.-.|+.+.-.++-+....+ | -++....++.-.|+.++..
T Consensus 360 ~g~~~lAe~c~~k~~d----------~~~L~lLy~~~g~~~~L~kl~~~a~~~-~------~~n~af~~~~~lgd~~~cv 422 (443)
T PF04053_consen 360 QGNIELAEECYQKAKD----------FSGLLLLYSSTGDREKLSKLAKIAEER-G------DINIAFQAALLLGDVEECV 422 (443)
T ss_dssp TTBHHHHHHHHHHCT-----------HHHHHHHHHHCT-HHHHHHHHHHHHHT-T-------HHHHHHHHHHHT-HHHHH
T ss_pred cCCHHHHHHHHHhhcC----------ccccHHHHHHhCCHHHHHHHHHHHHHc-c------CHHHHHHHHHHcCCHHHHH
Confidence 8888888888887755 666777777788877777666665543 2 2444555555667777777
Q ss_pred HHHHH
Q 042546 571 SLLCL 575 (671)
Q Consensus 571 ~l~~~ 575 (671)
+++.+
T Consensus 423 ~lL~~ 427 (443)
T PF04053_consen 423 DLLIE 427 (443)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66554
No 238
>PRK11906 transcriptional regulator; Provisional
Probab=91.87 E-value=10 Score=38.97 Aligned_cols=145 Identities=12% Similarity=0.071 Sum_probs=75.3
Q ss_pred HHHHHHHHHHHHH-CCCCCC-HHHHHHHHHHHHh---------cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 042546 424 MGECNKILKAMEE-GGFIAS-SNMKSKIAFRLSS---------AGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAG 492 (671)
Q Consensus 424 ~~~A~~~~~~m~~-~g~~~~-~~~~~~li~~~~~---------~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 492 (671)
.+.|..+|.+... ..+.|+ ...|..+..++.. .....+|.++-+...+.+ .-|......+-.+....+
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhc
Confidence 4567777777662 223343 2333333222221 223455666666666655 446666666666666666
Q ss_pred CHHHHHHHHHHHHHcCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 042546 493 DLDKAADCFQKMVEKEGTSHA---GYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDA 569 (671)
Q Consensus 493 ~~~~a~~~~~~m~~~~g~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A 569 (671)
+.+.|..+|++... +.|| ...|..++ ..-+|+.++|.+.+++..+....+.........++.|+.++ +++|
T Consensus 353 ~~~~a~~~f~rA~~---L~Pn~A~~~~~~~~~--~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~-~~~~ 426 (458)
T PRK11906 353 QAKVSHILFEQAKI---HSTDIASLYYYRALV--HFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPNP-LKNN 426 (458)
T ss_pred chhhHHHHHHHHhh---cCCccHHHHHHHHHH--HHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCCc-hhhh
Confidence 77777777777755 3444 22333333 33467777777777775432222222223333344455444 5666
Q ss_pred HHHHHH
Q 042546 570 LSLLCL 575 (671)
Q Consensus 570 ~~l~~~ 575 (671)
++++-+
T Consensus 427 ~~~~~~ 432 (458)
T PRK11906 427 IKLYYK 432 (458)
T ss_pred HHHHhh
Confidence 665543
No 239
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=91.82 E-value=3.9 Score=40.61 Aligned_cols=51 Identities=8% Similarity=-0.025 Sum_probs=37.8
Q ss_pred HHHccCChHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhCCChHHHHHHHHH
Q 042546 310 VLGREDCIDRFWKVLDEMRSKGYEMEM----ETCVKVLGRFSERNMVKEAVDLYEF 361 (671)
Q Consensus 310 ~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~li~~~~~~g~~~~a~~l~~~ 361 (671)
-+|+.|+....+.+|+...+.|-+ |. ..|..|-++|.-.+++++|++.+..
T Consensus 26 RLck~gdcraGv~ff~aA~qvGTe-Dl~tLSAIYsQLGNAyfyL~DY~kAl~yH~h 80 (639)
T KOG1130|consen 26 RLCKMGDCRAGVDFFKAALQVGTE-DLSTLSAIYSQLGNAYFYLKDYEKALKYHTH 80 (639)
T ss_pred HHHhccchhhhHHHHHHHHHhcch-HHHHHHHHHHHhcchhhhHhhHHHHHhhhhh
Confidence 478889999999999998887743 43 3455566677777788888887653
No 240
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=91.68 E-value=14 Score=35.99 Aligned_cols=101 Identities=14% Similarity=0.078 Sum_probs=58.6
Q ss_pred HHHHHHHHHHhcCCHH---HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 042546 410 MLNSVLKALISVGRMG---ECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIK 486 (671)
Q Consensus 410 ~~~~li~~~~~~g~~~---~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~ 486 (671)
+...++.+|...+..+ +|..+++.+.... +-...++-.-+..+.+.++.+++.+.+.+|...- .-....+..++.
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~-~~~e~~~~~~l~ 163 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESEY-GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSV-DHSESNFDSILH 163 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhc-ccccchHHHHHH
Confidence 4667777777776654 4555666664432 2224455555666667888899999999888652 112344555555
Q ss_pred HH---HhcCCHHHHHHHHHHHHHcCCCCCCH
Q 042546 487 GH---CVAGDLDKAADCFQKMVEKEGTSHAG 514 (671)
Q Consensus 487 ~~---~~~g~~~~a~~~~~~m~~~~g~~p~~ 514 (671)
.+ .... ...|...+..+.. ..+.|..
T Consensus 164 ~i~~l~~~~-~~~a~~~ld~~l~-~r~~~~~ 192 (278)
T PF08631_consen 164 HIKQLAEKS-PELAAFCLDYLLL-NRFKSSE 192 (278)
T ss_pred HHHHHHhhC-cHHHHHHHHHHHH-HHhCCCh
Confidence 44 3333 3455555555555 4454444
No 241
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=91.51 E-value=0.48 Score=30.83 Aligned_cols=38 Identities=18% Similarity=0.207 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhchHhhhccHHHHHH
Q 042546 618 VVLCLFAAFFQARRHSEAQDLLSKCPRYVRNHADVLNL 655 (671)
Q Consensus 618 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~l 655 (671)
.|..+..+|.+.|++++|.+++++.....++.++++..
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~ 40 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRA 40 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHH
Confidence 45556666666666666666666666555555555443
No 242
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=91.33 E-value=15 Score=35.88 Aligned_cols=93 Identities=11% Similarity=0.164 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHCCC---CCCHHHHHHHHHHHHhcCC----HHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCC---
Q 042546 425 GECNKILKAMEEGGF---IASSNMKSKIAFRLSSAGK----KDEANEFMDHMEASGSDVGDK-MWVSLIKGHCVAGD--- 493 (671)
Q Consensus 425 ~~A~~~~~~m~~~g~---~~~~~~~~~li~~~~~~g~----~~~A~~~~~~m~~~g~~~~~~-~~~~li~~~~~~g~--- 493 (671)
..|..+|+.|++... .++...+.+|+.. ...+ .+.++.+|+.+.+.|+..+.. -+.+-|-+++....
T Consensus 120 ~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~ 197 (297)
T PF13170_consen 120 QRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEK 197 (297)
T ss_pred HHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHH
Confidence 456666666665431 2444555555543 2222 345556666666655544322 23333333322211
Q ss_pred HHHHHHHHHHHHHcCCCCCCHHHHHHH
Q 042546 494 LDKAADCFQKMVEKEGTSHAGYAIDLL 520 (671)
Q Consensus 494 ~~~a~~~~~~m~~~~g~~p~~~~~~~l 520 (671)
+.++.++++.+.+ .|+++....|..+
T Consensus 198 v~r~~~l~~~l~~-~~~kik~~~yp~l 223 (297)
T PF13170_consen 198 VARVIELYNALKK-NGVKIKYMHYPTL 223 (297)
T ss_pred HHHHHHHHHHHHH-cCCccccccccHH
Confidence 3355666666666 6666665555433
No 243
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=91.13 E-value=0.25 Score=30.04 Aligned_cols=33 Identities=12% Similarity=-0.024 Sum_probs=27.9
Q ss_pred HHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 042546 605 LKGMTSKRFPSMSVVLCLFAAFFQARRHSEAQD 637 (671)
Q Consensus 605 ~~~m~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 637 (671)
|++.++..|.+...|..+...|...|++++|++
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 455666677899999999999999999999863
No 244
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=91.08 E-value=10 Score=33.28 Aligned_cols=100 Identities=10% Similarity=0.109 Sum_probs=44.0
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 042546 430 ILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEG 509 (671)
Q Consensus 430 ~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g 509 (671)
..+.+.+.+++|+...|..+|+.+.+.|++.... .+...++-+|.......+-.+.. ....+.++=-.|.++.+
T Consensus 16 YirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~----qllq~~Vi~DSk~lA~~LLs~~~--~~~~~~Ql~lDMLkRL~ 89 (167)
T PF07035_consen 16 YIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLH----QLLQYHVIPDSKPLACQLLSLGN--QYPPAYQLGLDMLKRLG 89 (167)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH----HHHhhcccCCcHHHHHHHHHhHc--cChHHHHHHHHHHHHhh
Confidence 3344445555555556666666666655543332 23333444444444433322222 11222222222222001
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 042546 510 TSHAGYAIDLLVNTYCSKNRAIDACKFVHNC 540 (671)
Q Consensus 510 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 540 (671)
..+..+++.+...|++-+|.++....
T Consensus 90 -----~~~~~iievLL~~g~vl~ALr~ar~~ 115 (167)
T PF07035_consen 90 -----TAYEEIIEVLLSKGQVLEALRYARQY 115 (167)
T ss_pred -----hhHHHHHHHHHhCCCHHHHHHHHHHc
Confidence 02444555555666666666665553
No 245
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=91.05 E-value=2.9 Score=39.98 Aligned_cols=77 Identities=16% Similarity=0.124 Sum_probs=61.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHHHHHHH
Q 042546 410 MLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEA-----SGSDVGDKMWVSL 484 (671)
Q Consensus 410 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~~~~~~~~~l 484 (671)
++..++..+..+|+.+.+...++++.... +-+...|..++.+|.+.|+...|+..|+.+.+ .|+.|...+....
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 46778888888999999999999888766 56788899999999999999999988887754 5777777666655
Q ss_pred HHH
Q 042546 485 IKG 487 (671)
Q Consensus 485 i~~ 487 (671)
...
T Consensus 234 ~~~ 236 (280)
T COG3629 234 EEI 236 (280)
T ss_pred HHH
Confidence 554
No 246
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.69 E-value=4.2 Score=38.35 Aligned_cols=99 Identities=16% Similarity=0.167 Sum_probs=52.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCH-HHHHHHH
Q 042546 445 MKSKIAFRLSSAGKKDEANEFMDHMEASGSD--VGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAG-YAIDLLV 521 (671)
Q Consensus 445 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~-~~~~~li 521 (671)
.|+.-+..| +.|++.+|...|....+.... -....+-.|..++...|++++|..+|..+.+..+-.|-. ...--|.
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 344444332 455566666666666554310 112234445666666666666666666665533332222 3444455
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhC
Q 042546 522 NTYCSKNRAIDACKFVHNCVREY 544 (671)
Q Consensus 522 ~~~~~~g~~~~A~~~~~~m~~~~ 544 (671)
.+..+.|+.++|...|+++.+++
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~Y 245 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKRY 245 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHC
Confidence 55566677777777777666553
No 247
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.66 E-value=12 Score=40.93 Aligned_cols=177 Identities=14% Similarity=0.129 Sum_probs=107.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH----HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 042546 411 LNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRL----SSAGKKDEANEFMDHMEASGSDVGDKMWVSLIK 486 (671)
Q Consensus 411 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~----~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~ 486 (671)
...-|+.+++...++.|..+-+.-. .|..+...+...| -+.|++++|..-|-+-... +.| ..+|.
T Consensus 337 le~kL~iL~kK~ly~~Ai~LAk~~~-----~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~ 405 (933)
T KOG2114|consen 337 LETKLDILFKKNLYKVAINLAKSQH-----LDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIK 405 (933)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHhcC-----CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHH
Confidence 4456677777777777776655432 3444444444444 4578888887777654422 122 23455
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 042546 487 GHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGF 566 (671)
Q Consensus 487 ~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~ 566 (671)
-|....+..+-..+++.+.+ .|+. +...-+.|+.+|.+.++.+.-.++.+... +....-|. ...+.-+.+.+-.
T Consensus 406 kfLdaq~IknLt~YLe~L~~-~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~~fd~---e~al~Ilr~snyl 479 (933)
T KOG2114|consen 406 KFLDAQRIKNLTSYLEALHK-KGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEWFFDV---ETALEILRKSNYL 479 (933)
T ss_pred HhcCHHHHHHHHHHHHHHHH-cccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-CcceeeeH---HHHHHHHHHhChH
Confidence 66666666677777777777 6664 33445678888888888888777766554 21122233 3455666677777
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHhcCChHHHHHHHHHhh
Q 042546 567 KDALSLLCLMKDHGFPPFVDPFIKYVSKSGTSDDAIAFLKGMT 609 (671)
Q Consensus 567 ~~A~~l~~~m~~~~~~p~~~t~~~~l~~~g~~~~A~~~~~~m~ 609 (671)
++|..+-..... ....+-..+-..|++++|.++++.+.
T Consensus 480 ~~a~~LA~k~~~-----he~vl~ille~~~ny~eAl~yi~slp 517 (933)
T KOG2114|consen 480 DEAELLATKFKK-----HEWVLDILLEDLHNYEEALRYISSLP 517 (933)
T ss_pred HHHHHHHHHhcc-----CHHHHHHHHHHhcCHHHHHHHHhcCC
Confidence 777776655432 22333444566778888888877664
No 248
>PRK11906 transcriptional regulator; Provisional
Probab=90.60 E-value=21 Score=36.78 Aligned_cols=115 Identities=10% Similarity=0.125 Sum_probs=81.7
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHH
Q 042546 422 GRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGD-KMWVSLIKGHCVAGDLDKAADC 500 (671)
Q Consensus 422 g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~-~~~~~li~~~~~~g~~~~a~~~ 500 (671)
.+..+|.+.-+...+.+ +-|......+-.+....++++.|...|++.... .||. .+|...-..+..+|+.++|.+.
T Consensus 318 ~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L--~Pn~A~~~~~~~~~~~~~G~~~~a~~~ 394 (458)
T PRK11906 318 LAAQKALELLDYVSDIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAKIH--STDIASLYYYRALVHFHNEKIEEARIC 394 (458)
T ss_pred HHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhc--CCccHHHHHHHHHHHHHcCCHHHHHHH
Confidence 45567777777777776 567777777777778888899999999998876 4543 4455555556778999999999
Q ss_pred HHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 042546 501 FQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNC 540 (671)
Q Consensus 501 ~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 540 (671)
+++..+....+.-.......|+.|+. ..+++|.+++.+-
T Consensus 395 i~~alrLsP~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 433 (458)
T PRK11906 395 IDKSLQLEPRRRKAVVIKECVDMYVP-NPLKNNIKLYYKE 433 (458)
T ss_pred HHHHhccCchhhHHHHHHHHHHHHcC-CchhhhHHHHhhc
Confidence 99965523344444455556667775 4577777777554
No 249
>PRK15331 chaperone protein SicA; Provisional
Probab=90.24 E-value=2.8 Score=36.31 Aligned_cols=86 Identities=12% Similarity=0.051 Sum_probs=44.0
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 042546 419 ISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAA 498 (671)
Q Consensus 419 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~ 498 (671)
-..|++++|..+|.-+...+ .-+..-|..|..+|-..+++++|...|...-..+. -|...+--.-.+|...|+.+.|.
T Consensus 48 y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~~~A~ 125 (165)
T PRK15331 48 YNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKAAKAR 125 (165)
T ss_pred HHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCHHHHH
Confidence 34566666666666655433 23344445555555556666666666655433221 12222333344555556666666
Q ss_pred HHHHHHHH
Q 042546 499 DCFQKMVE 506 (671)
Q Consensus 499 ~~~~~m~~ 506 (671)
..|+...+
T Consensus 126 ~~f~~a~~ 133 (165)
T PRK15331 126 QCFELVNE 133 (165)
T ss_pred HHHHHHHh
Confidence 65555544
No 250
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=90.20 E-value=11 Score=37.67 Aligned_cols=94 Identities=10% Similarity=-0.018 Sum_probs=67.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 042546 410 MLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHC 489 (671)
Q Consensus 410 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~ 489 (671)
+++.+.-+|.+.+++..|++.-+.....+ ++|....-.=-.+|...|+++.|+..|+++++. .|+...-+.=|..|.
T Consensus 259 ~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~--~P~Nka~~~el~~l~ 335 (397)
T KOG0543|consen 259 CHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALKL--EPSNKAARAELIKLK 335 (397)
T ss_pred HhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHH
Confidence 46777788889999999988888887766 677777777778888888999999999988876 566555554444443
Q ss_pred h-cC-CHHHHHHHHHHHHH
Q 042546 490 V-AG-DLDKAADCFQKMVE 506 (671)
Q Consensus 490 ~-~g-~~~~a~~~~~~m~~ 506 (671)
+ .. ..+...++|..|..
T Consensus 336 ~k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 336 QKIREYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 3 22 23344667777765
No 251
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=89.79 E-value=6.4 Score=39.31 Aligned_cols=136 Identities=12% Similarity=-0.002 Sum_probs=85.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 042546 485 IKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQR 564 (671)
Q Consensus 485 i~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g 564 (671)
-..|.+.|++..|..-|++...... |.+.-+.++.. ..... -..+++-+..+|.+.+
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~l~--------------~~~~~~~ee~~-~~~~~--------k~~~~lNlA~c~lKl~ 271 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSFLE--------------YRRSFDEEEQK-KAEAL--------KLACHLNLAACYLKLK 271 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHHhh--------------ccccCCHHHHH-HHHHH--------HHHHhhHHHHHHHhhh
Confidence 3567777788887777777655100 11111112211 11111 1235566777788888
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHH---HHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHH-HHHHH
Q 042546 565 GFKDALSLLCLMKDHGFPPFVDPF---IKYVSKSGTSDDAIAFLKGMTSKRFPSMSVVLCLFAAFFQARRHSEA-QDLLS 640 (671)
Q Consensus 565 ~~~~A~~l~~~m~~~~~~p~~~t~---~~~l~~~g~~~~A~~~~~~m~~~~~p~~~~~~~l~~~~~~~g~~~~A-~~~~~ 640 (671)
++.+|++.-.+..+.+ ++|...+ ..++...|.++.|+..|+.+.+..|.|...-+.|+..-.+..+.++. .++|.
T Consensus 272 ~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~ 350 (397)
T KOG0543|consen 272 EYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYA 350 (397)
T ss_pred hHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888877643 2333333 46667788899999999998888777877777777776666655543 66777
Q ss_pred hchH
Q 042546 641 KCPR 644 (671)
Q Consensus 641 ~m~~ 644 (671)
.|-.
T Consensus 351 ~mF~ 354 (397)
T KOG0543|consen 351 NMFA 354 (397)
T ss_pred HHhh
Confidence 7654
No 252
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.74 E-value=9.4 Score=36.08 Aligned_cols=57 Identities=14% Similarity=0.072 Sum_probs=27.5
Q ss_pred HHHHhcCChHHHHHHHHHhhhCCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHhchHhh
Q 042546 590 KYVSKSGTSDDAIAFLKGMTSKRF---PSMSVVLCLFAAFFQARRHSEAQDLLSKCPRYV 646 (671)
Q Consensus 590 ~~l~~~g~~~~A~~~~~~m~~~~~---p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 646 (671)
..+...|++++|..+|..+.+..+ .-+...--|.....+.|+.++|...|++.....
T Consensus 186 e~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~Y 245 (262)
T COG1729 186 ESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKRY 245 (262)
T ss_pred HHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHC
Confidence 333445555555555555444221 123444445555555555555555555554433
No 253
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=89.20 E-value=9.5 Score=38.02 Aligned_cols=132 Identities=17% Similarity=0.041 Sum_probs=82.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH----HCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH----HCCC-CCCHH
Q 042546 410 MLNSVLKALISVGRMGECNKILKAME----EGGF-IASSNMKSKIAFRLSSAGKKDEANEFMDHME----ASGS-DVGDK 479 (671)
Q Consensus 410 ~~~~li~~~~~~g~~~~A~~~~~~m~----~~g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~----~~g~-~~~~~ 479 (671)
.|..|-+.|.-.|+++.|....+.=. +-|- ..-...+..+-+++.-.|+++.|.+.|..-. +.|- .....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 35556666677788888887665422 1121 1223466777888888889988888877543 2221 12234
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH----cCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 042546 480 MWVSLIKGHCVAGDLDKAADCFQKMVE----KEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCV 541 (671)
Q Consensus 480 ~~~~li~~~~~~g~~~~a~~~~~~m~~----~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 541 (671)
+.-+|-..|.-..++++|...+.+-.. .....-....+.+|-.+|...|..+.|+.+...-.
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 455667777777778888877664322 01112245667888888888888888887766544
No 254
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=89.06 E-value=1.7 Score=41.56 Aligned_cols=56 Identities=18% Similarity=0.193 Sum_probs=48.9
Q ss_pred HHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhchH
Q 042546 589 IKYVSKSGTSDDAIAFLKGMTSKRFPSMSVVLCLFAAFFQARRHSEAQDLLSKCPR 644 (671)
Q Consensus 589 ~~~l~~~g~~~~A~~~~~~m~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 644 (671)
...+..+|+.+.+.+.++++....+-+...|..++.+|.+.|+...|+..|+++..
T Consensus 160 ae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 160 AEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 44556788899999999999998888999999999999999999999999999875
No 255
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.89 E-value=5.3 Score=38.27 Aligned_cols=49 Identities=20% Similarity=0.266 Sum_probs=26.1
Q ss_pred CHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 042546 493 DLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVR 542 (671)
Q Consensus 493 ~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 542 (671)
+.+++..++..=.+ .|+-||..+++.+++.+.+.+++.+|.++...|..
T Consensus 115 ~pq~~i~~l~npIq-YGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 115 DPQKAIYTLVNPIQ-YGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred ChHHHHHHHhCcch-hccccchhhHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 34455555555555 55555555555555555555555555555444443
No 256
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=88.59 E-value=16 Score=32.61 Aligned_cols=61 Identities=11% Similarity=0.120 Sum_probs=38.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 042546 410 MLNSVLKALISVGRMGECNKILKAMEEGGFIAS--SNMKSKIAFRLSSAGKKDEANEFMDHME 470 (671)
Q Consensus 410 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~ 470 (671)
.+..+..-|++.|+.++|.+.|.++.+....+. ...+-.+|......+++..+.....+..
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~ 100 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAE 100 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 466667777777777777777777765433332 2344556666666677766666665554
No 257
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=88.22 E-value=0.89 Score=28.01 Aligned_cols=26 Identities=12% Similarity=0.001 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhch
Q 042546 618 VVLCLFAAFFQARRHSEAQDLLSKCP 643 (671)
Q Consensus 618 ~~~~l~~~~~~~g~~~~A~~~~~~m~ 643 (671)
+|..|..+|.+.|++++|.+++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 47789999999999999999999844
No 258
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=88.18 E-value=42 Score=36.93 Aligned_cols=218 Identities=10% Similarity=0.021 Sum_probs=89.5
Q ss_pred ChHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHccCCh-------HHHHHHHHHHHHcCCCCCHH-
Q 042546 266 SNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCI-------DRFWKVLDEMRSKGYEMEME- 337 (671)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~g~~-------~~A~~~~~~m~~~g~~p~~~- 337 (671)
.+.++-.+++| |++++|.++...... .+......+-..+..|....+- +....-|++........|++
T Consensus 114 ~Wa~Iyy~LR~--G~~~~A~~~~~~~~~--~~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~~~~DpyK 189 (613)
T PF04097_consen 114 IWALIYYCLRC--GDYDEALEVANENRN--QFQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNSTDGDPYK 189 (613)
T ss_dssp HHHHHHHHHTT--T-HHHHHHHHHHTGG--GS-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-TTS-HHH
T ss_pred cHHHHHHHHhc--CCHHHHHHHHHHhhh--hhcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCCCCCChHH
Confidence 34444444555 999999999855543 3355556777778888775332 34444455544433222432
Q ss_pred --HHHHHHHHHHhCC-Ch-------HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCCC-
Q 042546 338 --TCVKVLGRFSERN-MV-------KEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVL- 406 (671)
Q Consensus 338 --t~~~li~~~~~~g-~~-------~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 406 (671)
.|..+ ..|--.. .. |+=+-+-=.+.+.....+... ......+...+.+..+......+
T Consensus 190 ~AvY~il-g~cD~~~~~~~~V~~tiED~LW~~L~~vr~~~~~~~~~----------~e~~~L~~LQ~~i~~~Ge~~F~~~ 258 (613)
T PF04097_consen 190 RAVYKIL-GRCDLSRRHLPEVARTIEDWLWLQLSLVREDERSSSSA----------YERYTLEDLQKLILKYGESHFNAG 258 (613)
T ss_dssp HHHHHHH-HT--CCC-S-TTC--SHHHHHHHHHHH---TTSSSSSS----------S----HHHHHHHHHHH-GGGCTT-
T ss_pred HHHHHHH-hcCCccccchHHHhCcHHHHHHHHHHhhccCCCccccc----------cccccHHHHHHHHHHhchhhcccc
Confidence 23323 2221111 11 111100001111111100000 00001223333333444444444
Q ss_pred -CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHH
Q 042546 407 -TDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASG-SDVGDKMWVSL 484 (671)
Q Consensus 407 -~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~~~~~~~~~l 484 (671)
++..| ...+.-+|+++.|.+.+-+ ..+...|.+++...+.-|.-.+-.+... ..+.... -.|...-+..|
T Consensus 259 ~~p~~Y---f~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arL 330 (613)
T PF04097_consen 259 SNPLLY---FQVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARL 330 (613)
T ss_dssp -----H---HHHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT---------------------------HHHH
T ss_pred hhHHHH---HHHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHH
Confidence 22223 3445778999999998877 2223456666665555443322222211 2222111 01222567888
Q ss_pred HHHHHhc---CCHHHHHHHHHHHHH
Q 042546 485 IKGHCVA---GDLDKAADCFQKMVE 506 (671)
Q Consensus 485 i~~~~~~---g~~~~a~~~~~~m~~ 506 (671)
|..|++. .+..+|.+.+--+..
T Consensus 331 I~~Y~~~F~~td~~~Al~Y~~li~~ 355 (613)
T PF04097_consen 331 IGQYTRSFEITDPREALQYLYLICL 355 (613)
T ss_dssp HHHHHHTTTTT-HHHHHHHHHGGGG
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHH
Confidence 8888763 577888888877765
No 259
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=87.71 E-value=0.012 Score=50.84 Aligned_cols=129 Identities=12% Similarity=0.078 Sum_probs=80.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 042546 413 SVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAG 492 (671)
Q Consensus 413 ~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 492 (671)
.+|..+.+.+..+....+++.+...+...+....+.++..|++.+..++..++++. .+..-...++..|.+.|
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~-------~~~yd~~~~~~~c~~~~ 84 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKT-------SNNYDLDKALRLCEKHG 84 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTS-------SSSS-CTHHHHHHHTTT
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccc-------ccccCHHHHHHHHHhcc
Confidence 35666677788888888888888766566788888888889888877888877762 22233456677777777
Q ss_pred CHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 042546 493 DLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRG 565 (671)
Q Consensus 493 ~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~ 565 (671)
.++++.-++.++.. .. ..+..+...++++.|.+.+.+. ++...|..+++.|...+.
T Consensus 85 l~~~a~~Ly~~~~~-~~---------~al~i~~~~~~~~~a~e~~~~~-------~~~~l~~~l~~~~l~~~~ 140 (143)
T PF00637_consen 85 LYEEAVYLYSKLGN-HD---------EALEILHKLKDYEEAIEYAKKV-------DDPELWEQLLKYCLDSKP 140 (143)
T ss_dssp SHHHHHHHHHCCTT-HT---------TCSSTSSSTHCSCCCTTTGGGC-------SSSHHHHHHHHHHCTSTC
T ss_pred hHHHHHHHHHHccc-HH---------HHHHHHHHHccHHHHHHHHHhc-------CcHHHHHHHHHHHHhcCc
Confidence 77777777766543 11 1111123345555555333222 345677777777665543
No 260
>PRK09687 putative lyase; Provisional
Probab=87.67 E-value=29 Score=33.78 Aligned_cols=224 Identities=13% Similarity=0.065 Sum_probs=109.7
Q ss_pred CCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCh----HHHHHHHHHHHhCCCCCCHHH
Q 042546 298 KHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMV----KEAVDLYEFAMACKNKPSVNC 373 (671)
Q Consensus 298 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~----~~a~~l~~~m~~~g~~p~~~~ 373 (671)
.+|....-..+..+.+.|.. ++...+..+... +|...-...+.++++.|+. +++..++..+... .|+..+
T Consensus 34 d~d~~vR~~A~~aL~~~~~~-~~~~~l~~ll~~---~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~V 107 (280)
T PRK09687 34 DHNSLKRISSIRVLQLRGGQ-DVFRLAIELCSS---KNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACV 107 (280)
T ss_pred CCCHHHHHHHHHHHHhcCcc-hHHHHHHHHHhC---CCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHH
Confidence 67777777777777777753 344444444432 4666677777778877763 4567777666322 455555
Q ss_pred HHHHHHHHHhcCcccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 042546 374 CTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRL 453 (671)
Q Consensus 374 ~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~ 453 (671)
-...+.+++..+........+.+......-..++..+-...+.++++.++ +++...+-.+.+ .+|..+-...+.++
T Consensus 108 R~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~---d~~~~VR~~A~~aL 183 (280)
T PRK09687 108 RASAINATGHRCKKNPLYSPKIVEQSQITAFDKSTNVRFAVAFALSVIND-EAAIPLLINLLK---DPNGDVRNWAAFAL 183 (280)
T ss_pred HHHHHHHHhcccccccccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCC-HHHHHHHHHHhc---CCCHHHHHHHHHHH
Confidence 55555555554322211111122222222222344444555555555554 344444444443 23333444444444
Q ss_pred HhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHH
Q 042546 454 SSAG-KKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAID 532 (671)
Q Consensus 454 ~~~g-~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~ 532 (671)
.+.+ ....+...+..+.. .+|...-...+.++.+.|+. .|...+-...+ .+ + .....+.+++..|.. +
T Consensus 184 g~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~~-~av~~Li~~L~-~~---~--~~~~a~~ALg~ig~~-~ 252 (280)
T PRK09687 184 NSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLALRKDK-RVLSVLIKELK-KG---T--VGDLIIEAAGELGDK-T 252 (280)
T ss_pred hcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHccCCh-hHHHHHHHHHc-CC---c--hHHHHHHHHHhcCCH-h
Confidence 4432 12344444444442 34555555556666666653 33333333333 21 1 123445555555553 4
Q ss_pred HHHHHHHHHH
Q 042546 533 ACKFVHNCVR 542 (671)
Q Consensus 533 A~~~~~~m~~ 542 (671)
|...+..+..
T Consensus 253 a~p~L~~l~~ 262 (280)
T PRK09687 253 LLPVLDTLLY 262 (280)
T ss_pred HHHHHHHHHh
Confidence 5555555543
No 261
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=87.53 E-value=11 Score=33.75 Aligned_cols=96 Identities=14% Similarity=0.113 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC---CCH----
Q 042546 444 NMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDK--MWVSLIKGHCVAGDLDKAADCFQKMVEKEGTS---HAG---- 514 (671)
Q Consensus 444 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~--~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~---p~~---- 514 (671)
..+..+..-|++.|+.++|.+.|.++.+....+... .+-.+|......+++..+.....+... .--. ++.
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~-~~~~~~d~~~~nrl 115 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES-LIEKGGDWERRNRL 115 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH-HHhccchHHHHHHH
Confidence 456778888999999999999999988765544433 366778888888888888888777665 2212 111
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 042546 515 YAIDLLVNTYCSKNRAIDACKFVHNCVR 542 (671)
Q Consensus 515 ~~~~~li~~~~~~g~~~~A~~~~~~m~~ 542 (671)
..|..|. +...+++..|-+.|-+...
T Consensus 116 k~~~gL~--~l~~r~f~~AA~~fl~~~~ 141 (177)
T PF10602_consen 116 KVYEGLA--NLAQRDFKEAAELFLDSLS 141 (177)
T ss_pred HHHHHHH--HHHhchHHHHHHHHHccCc
Confidence 1122222 2345677777777766543
No 262
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=87.25 E-value=2.4 Score=27.45 Aligned_cols=27 Identities=15% Similarity=0.209 Sum_probs=14.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 042546 411 LNSVLKALISVGRMGECNKILKAMEEG 437 (671)
Q Consensus 411 ~~~li~~~~~~g~~~~A~~~~~~m~~~ 437 (671)
+..+...|...|++++|.++|++..+.
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 344445555555555555555555544
No 263
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=86.68 E-value=36 Score=33.97 Aligned_cols=90 Identities=13% Similarity=0.200 Sum_probs=54.8
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHH
Q 042546 419 ISVGRMGECNKILKAMEEGGFIASSNM--KSKIAFRLSSAGKKDEANEFMDHMEASGSDVG-DKMWVSLIKGHCVAGDLD 495 (671)
Q Consensus 419 ~~~g~~~~A~~~~~~m~~~g~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~ 495 (671)
.-.|+.+.|.+-|+.|.. .|...- ...|.-.--+.|..+.|..+-++.-.. -|. .-.+.+.+...|..|+++
T Consensus 131 l~eG~~~~Ar~kfeAMl~---dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~--Ap~l~WA~~AtLe~r~~~gdWd 205 (531)
T COG3898 131 LLEGDYEDARKKFEAMLD---DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEK--APQLPWAARATLEARCAAGDWD 205 (531)
T ss_pred HhcCchHHHHHHHHHHhc---ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhh--ccCCchHHHHHHHHHHhcCChH
Confidence 346888888888888874 222211 112222233567777777777766543 232 355677778888888888
Q ss_pred HHHHHHHHHHHcCCCCCC
Q 042546 496 KAADCFQKMVEKEGTSHA 513 (671)
Q Consensus 496 ~a~~~~~~m~~~~g~~p~ 513 (671)
.|+++.+.-+...-+.++
T Consensus 206 ~AlkLvd~~~~~~vie~~ 223 (531)
T COG3898 206 GALKLVDAQRAAKVIEKD 223 (531)
T ss_pred HHHHHHHHHHHHHhhchh
Confidence 888887766653334444
No 264
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=86.60 E-value=19 Score=30.57 Aligned_cols=53 Identities=13% Similarity=0.135 Sum_probs=24.6
Q ss_pred hcCCHHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 042546 526 SKNRAIDACKFVHNCVREYDLKPW-HTTYEELIKNLLVQRGFKDALSLLCLMKD 578 (671)
Q Consensus 526 ~~g~~~~A~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 578 (671)
+.|++++|.+.|+.+..++...|- ...--.|+.+|.+.+++++|...+++..+
T Consensus 22 ~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFir 75 (142)
T PF13512_consen 22 QKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIR 75 (142)
T ss_pred HhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 345555555555555444322221 12333344555555555555555555543
No 265
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=86.49 E-value=31 Score=32.99 Aligned_cols=56 Identities=13% Similarity=0.045 Sum_probs=49.7
Q ss_pred HHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhchH
Q 042546 589 IKYVSKSGTSDDAIAFLKGMTSKRFPSMSVVLCLFAAFFQARRHSEAQDLLSKCPR 644 (671)
Q Consensus 589 ~~~l~~~g~~~~A~~~~~~m~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 644 (671)
...|..+|.+.+|..+.+....-.+.+...|-.++..|+..|+--+|.+-++++.+
T Consensus 286 a~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 286 ARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 34556899999999999999998888999999999999999999889888888764
No 266
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=86.31 E-value=53 Score=35.48 Aligned_cols=56 Identities=18% Similarity=0.046 Sum_probs=33.0
Q ss_pred CCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHH
Q 042546 298 KHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFA 362 (671)
Q Consensus 298 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m 362 (671)
+-|....-.|.+++.+.|.-++|.+.|-+-.. | -..+..|...+++.+|.++-+..
T Consensus 849 pe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~----p-----kaAv~tCv~LnQW~~avelaq~~ 904 (1189)
T KOG2041|consen 849 PEDSELLPVMADMFTSVGMCDQAVEAYLRRSL----P-----KAAVHTCVELNQWGEAVELAQRF 904 (1189)
T ss_pred CcccchHHHHHHHHHhhchHHHHHHHHHhccC----c-----HHHHHHHHHHHHHHHHHHHHHhc
Confidence 44455566667777777777777766643221 1 13455566666777777665543
No 267
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=86.10 E-value=37 Score=33.52 Aligned_cols=198 Identities=13% Similarity=0.078 Sum_probs=108.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHH-H---HHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCC---HH
Q 042546 444 NMKSKIAFRLSSAGKKDEANEFMDH-M---EASG-SDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHA---GY 515 (671)
Q Consensus 444 ~~~~~li~~~~~~g~~~~A~~~~~~-m---~~~g-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~---~~ 515 (671)
.+|..+..+.++.|.+++++..--. | .+.. -..-...|-.+-.++-+..++.+++.+-..-....|..|. ..
T Consensus 44 ~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq 123 (518)
T KOG1941|consen 44 RVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQ 123 (518)
T ss_pred HHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccch
Confidence 4566667777777777776553211 1 1100 0001233444555555555555555544433322333331 12
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCCCCHHH
Q 042546 516 AIDLLVNTYCSKNRAIDACKFVHNCVREYDL----KPWHTTYEELIKNLLVQRGFKDALSLLCLMKD----HGFPPFVDP 587 (671)
Q Consensus 516 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~----~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~----~~~~p~~~t 587 (671)
...++-.+..-.+.++.+.+.|+...+-..- ......|..|-..|.+..++++|+-+..+..+ .++..-..-
T Consensus 124 ~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~k 203 (518)
T KOG1941|consen 124 VSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLK 203 (518)
T ss_pred hhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHH
Confidence 2233445555566788888888776542111 11234777888888888888888766554432 222211111
Q ss_pred H--------HHHHHhcCChHHHHHHHHHhhh-----CCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHh
Q 042546 588 F--------IKYVSKSGTSDDAIAFLKGMTS-----KRF-PSMSVVLCLFAAFFQARRHSEAQDLLSK 641 (671)
Q Consensus 588 ~--------~~~l~~~g~~~~A~~~~~~m~~-----~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 641 (671)
| .-.|...|++.+|.+.-++..+ ++. .-.....++.+.|...|+.|.|..-|++
T Consensus 204 yr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~ 271 (518)
T KOG1941|consen 204 YRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQ 271 (518)
T ss_pred HHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHH
Confidence 1 2344567888778777776654 111 1233455778889889998888777766
No 268
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=85.69 E-value=41 Score=33.64 Aligned_cols=258 Identities=10% Similarity=-0.040 Sum_probs=145.0
Q ss_pred hCCChHHHHHHHHHHHHcCCCCCCHH--HHHHHHHHHHccCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhCCChH
Q 042546 277 LGDEPKKALIFFRWAEESGFVKHDES--SYNAMASVLGREDCIDRFWKVLDEMRSKGYEM-EMETCVKVLGRFSERNMVK 353 (671)
Q Consensus 277 ~~~~~~~A~~~f~~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~ 353 (671)
..|+.++|.+-|+.|.. .|... -...|.-.--+.|..+.|.+.-++.-.. -| -.-.+...+...+..|+++
T Consensus 132 ~eG~~~~Ar~kfeAMl~----dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~--Ap~l~WA~~AtLe~r~~~gdWd 205 (531)
T COG3898 132 LEGDYEDARKKFEAMLD----DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEK--APQLPWAARATLEARCAAGDWD 205 (531)
T ss_pred hcCchHHHHHHHHHHhc----ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhh--ccCCchHHHHHHHHHHhcCChH
Confidence 35999999999999985 33322 2233333445778888888888877654 33 3567888999999999999
Q ss_pred HHHHHHHHHHhC-CCCCCHHH--HHHHHHHHHhcCcccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 042546 354 EAVDLYEFAMAC-KNKPSVNC--CTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKI 430 (671)
Q Consensus 354 ~a~~l~~~m~~~-g~~p~~~~--~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 430 (671)
.|+++.+.-+.. -+.++..- -..|+.+-+.+. -.-+...|...
T Consensus 206 ~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~----------------------------------ldadp~~Ar~~ 251 (531)
T COG3898 206 GALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSL----------------------------------LDADPASARDD 251 (531)
T ss_pred HHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHH----------------------------------hcCChHHHHHH
Confidence 999999987643 23444321 112222211100 01122333333
Q ss_pred HHHHHHCCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 042546 431 LKAMEEGGFIASSNMK-SKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEG 509 (671)
Q Consensus 431 ~~~m~~~g~~~~~~~~-~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g 509 (671)
-.+..+ +.||.+-- -.-..++.+.|++.++-.+++.+-+....|+. +.. -.+.+.|+ .+..-+++..+...
T Consensus 252 A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~i--a~l--Y~~ar~gd--ta~dRlkRa~~L~s 323 (531)
T COG3898 252 ALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDI--ALL--YVRARSGD--TALDRLKRAKKLES 323 (531)
T ss_pred HHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHH--HHH--HHHhcCCC--cHHHHHHHHHHHHh
Confidence 322222 23443221 22335566777777777777777666444432 221 12234443 23333333333233
Q ss_pred CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHhCCCCCCH
Q 042546 510 TSHA-GYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLV-QRGFKDALSLLCLMKDHGFPPFV 585 (671)
Q Consensus 510 ~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~-~g~~~~A~~l~~~m~~~~~~p~~ 585 (671)
++|| ..+--.+..+-...|++..|..--+... ...|....|..|.+--.. .|+-.++.+++.+..+..-.|+.
T Consensus 324 lk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~---r~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~APrdPaW 398 (531)
T COG3898 324 LKPNNAESSLAVAEAALDAGEFSAARAKAEAAA---REAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKAPRDPAW 398 (531)
T ss_pred cCccchHHHHHHHHHHHhccchHHHHHHHHHHh---hhCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcCCCCCcc
Confidence 4443 3444455566666777777666555553 256777777766664433 47888888877777766555554
No 269
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.67 E-value=14 Score=35.80 Aligned_cols=151 Identities=9% Similarity=0.011 Sum_probs=109.5
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHH----HHHHHhcC
Q 042546 489 CVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEEL----IKNLLVQR 564 (671)
Q Consensus 489 ~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~l----i~~~~~~g 564 (671)
--.|...+|-..++++.+ ..+.|...+.-.=++|...|+.+.....++++..+ ..||...|.-+ .-++...|
T Consensus 114 ~~~g~~h~a~~~wdklL~--d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~--wn~dlp~~sYv~GmyaFgL~E~g 189 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLD--DYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK--WNADLPCYSYVHGMYAFGLEECG 189 (491)
T ss_pred hccccccHHHHHHHHHHH--hCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc--cCCCCcHHHHHHHHHHhhHHHhc
Confidence 346778888888888886 56778888888889999999999999999998864 45565444332 23445689
Q ss_pred CHHHHHHHHHHHHhCCCCCCH----HHHHHHHHhcCChHHHHHHHHHhhhCCC----CCHHHHHHHHHHHHHcCCHHHHH
Q 042546 565 GFKDALSLLCLMKDHGFPPFV----DPFIKYVSKSGTSDDAIAFLKGMTSKRF----PSMSVVLCLFAAFFQARRHSEAQ 636 (671)
Q Consensus 565 ~~~~A~~l~~~m~~~~~~p~~----~t~~~~l~~~g~~~~A~~~~~~m~~~~~----p~~~~~~~l~~~~~~~g~~~~A~ 636 (671)
-+++|.+.-++..+- .|+. .+...++...|+..++.++..+-...-. .-...|-...-.+...+.++.|+
T Consensus 190 ~y~dAEk~A~ralqi--N~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~al 267 (491)
T KOG2610|consen 190 IYDDAEKQADRALQI--NRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKAL 267 (491)
T ss_pred cchhHHHHHHhhccC--CCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHH
Confidence 999999988887653 3332 2345667788999999999876655211 22344666666777889999999
Q ss_pred HHHHh-chHh
Q 042546 637 DLLSK-CPRY 645 (671)
Q Consensus 637 ~~~~~-m~~~ 645 (671)
++|+. |..+
T Consensus 268 eIyD~ei~k~ 277 (491)
T KOG2610|consen 268 EIYDREIWKR 277 (491)
T ss_pred HHHHHHHHHH
Confidence 99986 5544
No 270
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=85.61 E-value=35 Score=32.78 Aligned_cols=119 Identities=14% Similarity=0.153 Sum_probs=67.8
Q ss_pred CCChHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHhcCCHHH
Q 042546 349 RNMVKEAVDLYEFAMA-CKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRE-NGNVLTDAMLNSVLKALISVGRMGE 426 (671)
Q Consensus 349 ~g~~~~a~~l~~~m~~-~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~ 426 (671)
+..+.+|+++|+...- ..+--|..+...+++......+.......++++.+.. .+..++..+...+|..++..+++.+
T Consensus 141 N~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~k 220 (292)
T PF13929_consen 141 NKIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNK 220 (292)
T ss_pred hHHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHH
Confidence 3445677777764331 2344556666666666555333333344444444443 2345555566666677777777776
Q ss_pred HHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 042546 427 CNKILKAMEEG-GFIASSNMKSKIAFRLSSAGKKDEANEFMD 467 (671)
Q Consensus 427 A~~~~~~m~~~-g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 467 (671)
-.++++.-... +...|...|..+|....+.|+.+-..++.+
T Consensus 221 l~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~ 262 (292)
T PF13929_consen 221 LFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIID 262 (292)
T ss_pred HHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhh
Confidence 66666655543 444566667777777777776665555544
No 271
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=85.45 E-value=25 Score=30.84 Aligned_cols=84 Identities=12% Similarity=0.082 Sum_probs=40.5
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHH----HH--HHHHHhcCChHHHHHHHHHhhhCCC-CCHHHHHHHHHHHHHcCCHH
Q 042546 561 LVQRGFKDALSLLCLMKDHGFPPFVD----PF--IKYVSKSGTSDDAIAFLKGMTSKRF-PSMSVVLCLFAAFFQARRHS 633 (671)
Q Consensus 561 ~~~g~~~~A~~l~~~m~~~~~~p~~~----t~--~~~l~~~g~~~~A~~~~~~m~~~~~-p~~~~~~~l~~~~~~~g~~~ 633 (671)
.+.|+...|..-|.+.-...-.|-.. -+ .-+|...|.+++...-.+-+...+. -....-..|.-+-.+.|++.
T Consensus 105 a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a 184 (221)
T COG4649 105 AQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFA 184 (221)
T ss_pred hhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchH
Confidence 34555555555555554333333221 11 1223455666655555554443222 23333445555556666666
Q ss_pred HHHHHHHhchH
Q 042546 634 EAQDLLSKCPR 644 (671)
Q Consensus 634 ~A~~~~~~m~~ 644 (671)
+|.++|.++.+
T Consensus 185 ~A~~~F~qia~ 195 (221)
T COG4649 185 KAKSWFVQIAN 195 (221)
T ss_pred HHHHHHHHHHc
Confidence 66666666543
No 272
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.06 E-value=68 Score=35.59 Aligned_cols=137 Identities=11% Similarity=0.092 Sum_probs=78.3
Q ss_pred CCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHH
Q 042546 141 ESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRNKMTEKFEKEGLESDLEK 220 (671)
Q Consensus 141 ~~~~~~A~~~f~~m~~~~~~~~~~~~~n~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~~~ 220 (671)
.|++++|..-+-+-.. -+.| + .+|.-|....+..+-...++.+.+.|+. +..--+.||.+|.+.++.+...+
T Consensus 381 Kgdf~~A~~qYI~tI~--~le~---s--~Vi~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~e 452 (933)
T KOG2114|consen 381 KGDFDEATDQYIETIG--FLEP---S--EVIKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTE 452 (933)
T ss_pred cCCHHHHHHHHHHHcc--cCCh---H--HHHHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHH
Confidence 5888888766644322 1112 2 4778888888888888899999999875 55556789999999988777766
Q ss_pred HHHHHHcCCCCChHHHHHHHHHHHHhcCCChhHHHHHHhhcccccChHHHHHHHHHhCCChHHHHHHHHHHH
Q 042546 221 LKGIFATGSIDNSIEKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAE 292 (671)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~f~~~~ 292 (671)
+.+........-.+ ..+..+.+....-.+..-...+.+. .+..++.++.. -+++++|++.+..++
T Consensus 453 fI~~~~~g~~~fd~----e~al~Ilr~snyl~~a~~LA~k~~~--he~vl~ille~-~~ny~eAl~yi~slp 517 (933)
T KOG2114|consen 453 FISKCDKGEWFFDV----ETALEILRKSNYLDEAELLATKFKK--HEWVLDILLED-LHNYEEALRYISSLP 517 (933)
T ss_pred HHhcCCCcceeeeH----HHHHHHHHHhChHHHHHHHHHHhcc--CHHHHHHHHHH-hcCHHHHHHHHhcCC
Confidence 65554422221111 1222222222222222222222221 33333333333 277888888887653
No 273
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=84.81 E-value=23 Score=30.02 Aligned_cols=75 Identities=15% Similarity=0.119 Sum_probs=51.2
Q ss_pred HHhcCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 042546 418 LISVGRMGECNKILKAMEEGG--FIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAG 492 (671)
Q Consensus 418 ~~~~g~~~~A~~~~~~m~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 492 (671)
..+.|++++|.+.|+.+..+- -+-....--.++.+|.+.+++++|...+++..+....--.+-|...+.+++.-.
T Consensus 20 ~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~ 96 (142)
T PF13512_consen 20 ALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYE 96 (142)
T ss_pred HHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHH
Confidence 456788999999998887642 122334556688888899999999999988887643322345666666655443
No 274
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=84.59 E-value=54 Score=34.08 Aligned_cols=178 Identities=16% Similarity=0.155 Sum_probs=93.9
Q ss_pred HHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 042546 372 NCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAF 451 (671)
Q Consensus 372 ~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~ 451 (671)
...-++++.++.... .+.++.+..++...| -+...|-.++.+|... .-+.-..+++++.+..+ -|++.-..|..
T Consensus 67 ~~l~~~~~~f~~n~k--~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~df-nDvv~~ReLa~ 140 (711)
T COG1747 67 SCLVTLLTIFGDNHK--NQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF-NDVVIGRELAD 140 (711)
T ss_pred hHHHHHHHHhccchH--HHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc-hhHHHHHHHHH
Confidence 334455555543332 233444444444433 2334566677777766 44566667776666543 23333344444
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHh
Q 042546 452 RLSSAGKKDEANEFMDHMEASGSDV-----GDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCS 526 (671)
Q Consensus 452 ~~~~~g~~~~A~~~~~~m~~~g~~~-----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~ 526 (671)
-|-+ ++.+.+..+|.+...+-+.. -...|.-++.. -..+.|....+...+.++.|..--.+.+.-+-.-|..
T Consensus 141 ~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~ 217 (711)
T COG1747 141 KYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSE 217 (711)
T ss_pred HHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcc
Confidence 4444 67777777777665442211 01234444431 1345666666666666555555555666666666777
Q ss_pred cCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 042546 527 KNRAIDACKFVHNCVREYDLKPWHTTYEELIKNL 560 (671)
Q Consensus 527 ~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~ 560 (671)
..++++|.+++..+.+. -..|...-..++..+
T Consensus 218 ~eN~~eai~Ilk~il~~--d~k~~~ar~~~i~~l 249 (711)
T COG1747 218 NENWTEAIRILKHILEH--DEKDVWARKEIIENL 249 (711)
T ss_pred ccCHHHHHHHHHHHhhh--cchhhhHHHHHHHHH
Confidence 77777777777766542 223444444455443
No 275
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=84.47 E-value=49 Score=33.44 Aligned_cols=147 Identities=16% Similarity=0.124 Sum_probs=72.0
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH--HhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHH---H-----
Q 042546 488 HCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTY--CSKNRAIDACKFVHNCVREYDLKPWHTTYEEL---I----- 557 (671)
Q Consensus 488 ~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~--~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~l---i----- 557 (671)
+...|+.++|.+.--...+ . .+ ...+...+++. --.++.+.|...|++-.+ +.|+...-..+ .
T Consensus 179 l~~~~~~~~a~~ea~~ilk-l--d~-~n~~al~vrg~~~yy~~~~~ka~~hf~qal~---ldpdh~~sk~~~~~~k~le~ 251 (486)
T KOG0550|consen 179 LAFLGDYDEAQSEAIDILK-L--DA-TNAEALYVRGLCLYYNDNADKAINHFQQALR---LDPDHQKSKSASMMPKKLEV 251 (486)
T ss_pred hhhcccchhHHHHHHHHHh-c--cc-chhHHHHhcccccccccchHHHHHHHhhhhc---cChhhhhHHhHhhhHHHHHH
Confidence 3445666666665554443 1 11 11233333322 234566666666665542 33443322111 1
Q ss_pred -----HHHHhcCCHHHHHHHHHHHHhCCCCCCHH-HHHHHH-------HhcCChHHHHHHHHHhhhCCCCCHHHHHHHHH
Q 042546 558 -----KNLLVQRGFKDALSLLCLMKDHGFPPFVD-PFIKYV-------SKSGTSDDAIAFLKGMTSKRFPSMSVVLCLFA 624 (671)
Q Consensus 558 -----~~~~~~g~~~~A~~l~~~m~~~~~~p~~~-t~~~~l-------~~~g~~~~A~~~~~~m~~~~~p~~~~~~~l~~ 624 (671)
.-..+.|++.+|.+.|.+.+. +.|+.. +...+| .+.|+.++|+.--+...+.++.-...|..-..
T Consensus 252 ~k~~gN~~fk~G~y~~A~E~Yteal~--idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~ 329 (486)
T KOG0550|consen 252 KKERGNDAFKNGNYRKAYECYTEALN--IDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRAN 329 (486)
T ss_pred HHhhhhhHhhccchhHHHHHHHHhhc--CCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHH
Confidence 113356777777777777663 444432 222222 35677777777666655543222223333334
Q ss_pred HHHHcCCHHHHHHHHHhch
Q 042546 625 AFFQARRHSEAQDLLSKCP 643 (671)
Q Consensus 625 ~~~~~g~~~~A~~~~~~m~ 643 (671)
++.-.++|++|.+-+++..
T Consensus 330 c~l~le~~e~AV~d~~~a~ 348 (486)
T KOG0550|consen 330 CHLALEKWEEAVEDYEKAM 348 (486)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4455566777777776643
No 276
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=84.31 E-value=22 Score=29.41 Aligned_cols=87 Identities=14% Similarity=0.019 Sum_probs=45.3
Q ss_pred HHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH---HHH---HHHHHhcCC
Q 042546 524 YCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFV---DPF---IKYVSKSGT 597 (671)
Q Consensus 524 ~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~---~t~---~~~l~~~g~ 597 (671)
.+..|+++.|.+.|.+...- .+-+...||.-..++.-.|+.++|++=+++..+..-.-.. ..| ...|...|+
T Consensus 53 laE~g~Ld~AlE~F~qal~l--~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQALCL--APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHhccchHHHHHHHHHHHHh--cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 44556666666666665531 2334556666666666666666666655555432111111 111 223345666
Q ss_pred hHHHHHHHHHhhhCC
Q 042546 598 SDDAIAFLKGMTSKR 612 (671)
Q Consensus 598 ~~~A~~~~~~m~~~~ 612 (671)
.+.|..=|+..-..+
T Consensus 131 dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 131 DDAARADFEAAAQLG 145 (175)
T ss_pred hHHHHHhHHHHHHhC
Confidence 666666666655533
No 277
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=84.08 E-value=2.6 Score=25.85 Aligned_cols=23 Identities=13% Similarity=0.262 Sum_probs=12.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHH
Q 042546 446 KSKIAFRLSSAGKKDEANEFMDH 468 (671)
Q Consensus 446 ~~~li~~~~~~g~~~~A~~~~~~ 468 (671)
|+.|...|.+.|++++|.++|++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 44555556666666666666555
No 278
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.72 E-value=46 Score=32.55 Aligned_cols=37 Identities=11% Similarity=-0.002 Sum_probs=18.9
Q ss_pred hCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 042546 348 ERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSK 385 (671)
Q Consensus 348 ~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~ 385 (671)
..|+..+|-..++++++. .+.|...++..-+++...|
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G 151 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNG 151 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhcc
Confidence 356667777777776642 2333344444444444444
No 279
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=82.45 E-value=39 Score=30.86 Aligned_cols=217 Identities=16% Similarity=0.090 Sum_probs=105.1
Q ss_pred CCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 042546 422 GRMGECNKILKAMEEGGFI-ASSNMKSKIAFRLSSAGKKDEANEFMDHMEAS-GSDVGDKMWVSLIKGHCVAGDLDKAAD 499 (671)
Q Consensus 422 g~~~~A~~~~~~m~~~g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~~~~~~~~~li~~~~~~g~~~~a~~ 499 (671)
+....+...+......... .....+......+...+....+...+...... ........+......+...+..+.+.+
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 3444444444444433211 12455555556666666666666666655431 113334445555555555566666666
Q ss_pred HHHHHHHcCCCCCCHHHHHHHHH-HHHhcCCHHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 042546 500 CFQKMVEKEGTSHAGYAIDLLVN-TYCSKNRAIDACKFVHNCVREYDL--KPWHTTYEELIKNLLVQRGFKDALSLLCLM 576 (671)
Q Consensus 500 ~~~~m~~~~g~~p~~~~~~~li~-~~~~~g~~~~A~~~~~~m~~~~~~--~p~~~~~~~li~~~~~~g~~~~A~~l~~~m 576 (671)
.+..... ....+. ........ .+...|+.+.|...+..... ... ......+......+...++.++|...+.+.
T Consensus 117 ~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 193 (291)
T COG0457 117 LLEKALA-LDPDPD-LAEALLALGALYELGDYEEALELYEKALE-LDPELNELAEALLALGALLEALGRYEEALELLEKA 193 (291)
T ss_pred HHHHHHc-CCCCcc-hHHHHHHHHHHHHcCCHHHHHHHHHHHHh-cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHH
Confidence 6666554 222221 11111222 45566666666666666532 111 012223333333345566666666666666
Q ss_pred HhCCCCCC-----HHHHHHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhch
Q 042546 577 KDHGFPPF-----VDPFIKYVSKSGTSDDAIAFLKGMTSKRFPSMSVVLCLFAAFFQARRHSEAQDLLSKCP 643 (671)
Q Consensus 577 ~~~~~~p~-----~~t~~~~l~~~g~~~~A~~~~~~m~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 643 (671)
... .++ .......+...+..+.|...+.......+.....+..+...+...|..+++...+.+..
T Consensus 194 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (291)
T COG0457 194 LKL--NPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKAL 263 (291)
T ss_pred Hhh--CcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHH
Confidence 543 222 11223344455566666666666665443333444444444445555666666555543
No 280
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=82.32 E-value=24 Score=32.18 Aligned_cols=87 Identities=13% Similarity=0.051 Sum_probs=53.5
Q ss_pred CChHHHHHHHHHHhhcCCCCCC-HHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHH-
Q 042546 142 SSPDEARRFFNWVLEKESERLS-SKTYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRNKMTEKFEKEGLESDLE- 219 (671)
Q Consensus 142 ~~~~~A~~~f~~m~~~~~~~~~-~~~~n~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~~- 219 (671)
|-...|+-=|....... |+ +..||-+---+...|+++.|.+.|+...+....-+-...|.-|.-| -.|+..-|.
T Consensus 79 GL~~LAR~DftQaLai~---P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~Y-Y~gR~~LAq~ 154 (297)
T COG4785 79 GLRALARNDFSQALAIR---PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALY-YGGRYKLAQD 154 (297)
T ss_pred hHHHHHhhhhhhhhhcC---CCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeee-ecCchHhhHH
Confidence 55566666666554422 33 4578888888899999999999999998875433333334444333 345555554
Q ss_pred HHHHHHHcCCCCC
Q 042546 220 KLKGIFATGSIDN 232 (671)
Q Consensus 220 ~~~~~~~~~~~~~ 232 (671)
.+...+...+.++
T Consensus 155 d~~~fYQ~D~~DP 167 (297)
T COG4785 155 DLLAFYQDDPNDP 167 (297)
T ss_pred HHHHHHhcCCCCh
Confidence 3444555444443
No 281
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=82.26 E-value=16 Score=28.75 Aligned_cols=60 Identities=8% Similarity=0.054 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 042546 496 KAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIK 558 (671)
Q Consensus 496 ~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~ 558 (671)
+..+-++.+.. ..+.|+..+..+.+.+|.+.+++..|.++|+.++.|.+.. ...|..+++
T Consensus 28 e~rrglN~l~~-~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~--~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFG-YDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNK--KEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTT-SSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT---TTHHHHHHH
T ss_pred HHHHHHHHHhc-cccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCh--HHHHHHHHH
Confidence 44455555555 5666777777777777777777777777777777664432 225665554
No 282
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=82.20 E-value=49 Score=31.84 Aligned_cols=52 Identities=17% Similarity=0.176 Sum_probs=26.8
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 042546 453 LSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMV 505 (671)
Q Consensus 453 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 505 (671)
....|+..+|..+|........ -+...--.+..+|...|+++.|..++..+.
T Consensus 144 ~~~~e~~~~a~~~~~~al~~~~-~~~~~~~~la~~~l~~g~~e~A~~iL~~lP 195 (304)
T COG3118 144 LIEAEDFGEAAPLLKQALQAAP-ENSEAKLLLAECLLAAGDVEAAQAILAALP 195 (304)
T ss_pred hhhccchhhHHHHHHHHHHhCc-ccchHHHHHHHHHHHcCChHHHHHHHHhCc
Confidence 3345666666666665554321 122333445555556666666666665544
No 283
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=81.45 E-value=37 Score=29.83 Aligned_cols=70 Identities=14% Similarity=0.218 Sum_probs=39.6
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCC
Q 042546 300 DESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEME-METCVKVLGRFSERNMVKEAVDLYEFAMACKNKPS 370 (671)
Q Consensus 300 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~ 370 (671)
+...|..-+. +++.+..++|+.-|.++.+.|...= +..---+-....+.|+...|...|.+.-...-.|-
T Consensus 58 sgd~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~ 128 (221)
T COG4649 58 SGDAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQ 128 (221)
T ss_pred chHHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcc
Confidence 3344444443 3455667777777777777654321 11122233345567788888888887765444443
No 284
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=81.30 E-value=30 Score=28.71 Aligned_cols=89 Identities=16% Similarity=0.089 Sum_probs=47.8
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH---HHHHHHHHHhcCC
Q 042546 417 ALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKM---WVSLIKGHCVAGD 493 (671)
Q Consensus 417 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~---~~~li~~~~~~g~ 493 (671)
+.+..|+++.|++.|.+....- +.....||.-..++--.|+.++|++=+++..+..-...... |.---..|...|+
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~-P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLA-PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhc-ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 3456677777777776655432 34556677667777777777777766666554211111111 2222223444555
Q ss_pred HHHHHHHHHHHHH
Q 042546 494 LDKAADCFQKMVE 506 (671)
Q Consensus 494 ~~~a~~~~~~m~~ 506 (671)
-+.|..=|+..-+
T Consensus 131 dd~AR~DFe~AA~ 143 (175)
T KOG4555|consen 131 DDAARADFEAAAQ 143 (175)
T ss_pred hHHHHHhHHHHHH
Confidence 5666555555544
No 285
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=81.21 E-value=34 Score=29.25 Aligned_cols=50 Identities=8% Similarity=0.032 Sum_probs=26.4
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 042546 491 AGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVR 542 (671)
Q Consensus 491 ~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 542 (671)
.++.+++..+++.|.--..-.|...++...+ +...|++++|.++|.++.+
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l--~i~rg~w~eA~rvlr~l~~ 72 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLKELDMFDGWL--LIARGNYDEAARILRELLS 72 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCccccchhHHHH--HHHcCCHHHHHHHHHhhhc
Confidence 5566666666666644122222333343333 2356666666666666654
No 286
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=80.51 E-value=98 Score=34.16 Aligned_cols=218 Identities=12% Similarity=0.027 Sum_probs=90.6
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCC-------hHHHHHHHHHHHhCCCCCCHH---H
Q 042546 304 YNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNM-------VKEAVDLYEFAMACKNKPSVN---C 373 (671)
Q Consensus 304 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~-------~~~a~~l~~~m~~~g~~p~~~---~ 373 (671)
-=++|--|.|+|++++|.++..+.... .......+...+..|....+ -+....-|+...+.....|.+ .
T Consensus 114 ~Wa~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~~~~DpyK~Av 192 (613)
T PF04097_consen 114 IWALIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNSTDGDPYKRAV 192 (613)
T ss_dssp HHHHHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-TTS-HHHHHH
T ss_pred cHHHHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCCCCCChHHHHH
Confidence 345778889999999999999655543 34456677788888876532 245555666655544433433 2
Q ss_pred HHHHHHHHHhcCcccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC-----------HHHHHHHHHHHHHCCCCCC
Q 042546 374 CTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGR-----------MGECNKILKAMEEGGFIAS 442 (671)
Q Consensus 374 ~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-----------~~~A~~~~~~m~~~g~~~~ 442 (671)
|..+ +++...+... ..+..+..-|--+=-.+.+... +++-.+...+.-+..+.+
T Consensus 193 Y~il----g~cD~~~~~~----------~~V~~tiED~LW~~L~~vr~~~~~~~~~~e~~~L~~LQ~~i~~~Ge~~F~~- 257 (613)
T PF04097_consen 193 YKIL----GRCDLSRRHL----------PEVARTIEDWLWLQLSLVREDERSSSSAYERYTLEDLQKLILKYGESHFNA- 257 (613)
T ss_dssp HHHH----HT--CCC-S-----------TTC--SHHHHHHHHHHH---TTSSSSSSS----HHHHHHHHHHH-GGGCTT-
T ss_pred HHHH----hcCCccccch----------HHHhCcHHHHHHHHHHhhccCCCccccccccccHHHHHHHHHHhchhhccc-
Confidence 2222 2222111000 0011111111111111111111 112222222222222223
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 042546 443 SNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVN 522 (671)
Q Consensus 443 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~ 522 (671)
....-.....+.-.|++|.|.+.+-+ ..+...|.+.+.+.+..|.-.+-.+... ..+.....-.|...-+..||.
T Consensus 258 ~~~p~~Yf~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~ 332 (613)
T PF04097_consen 258 GSNPLLYFQVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIG 332 (613)
T ss_dssp ------HHHHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT---------------------------HHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHH
Confidence 11111233444558888888888776 2233556666666665544332222211 222210111112255777888
Q ss_pred HHHh---cCCHHHHHHHHHHHHH
Q 042546 523 TYCS---KNRAIDACKFVHNCVR 542 (671)
Q Consensus 523 ~~~~---~g~~~~A~~~~~~m~~ 542 (671)
.|.+ ..+..+|.+.|--+..
T Consensus 333 ~Y~~~F~~td~~~Al~Y~~li~~ 355 (613)
T PF04097_consen 333 QYTRSFEITDPREALQYLYLICL 355 (613)
T ss_dssp HHHHTTTTT-HHHHHHHHHGGGG
T ss_pred HHHHHHhccCHHHHHHHHHHHHH
Confidence 7776 4567777777776654
No 287
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=79.61 E-value=20 Score=28.06 Aligned_cols=56 Identities=16% Similarity=0.276 Sum_probs=31.3
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH-HhcCChHHHHHHHHHhhhCCCCCHHH
Q 042546 559 NLLVQRGFKDALSLLCLMKDHGFPPFVDPFIKYV-SKSGTSDDAIAFLKGMTSKRFPSMSV 618 (671)
Q Consensus 559 ~~~~~g~~~~A~~l~~~m~~~~~~p~~~t~~~~l-~~~g~~~~A~~~~~~m~~~~~p~~~~ 618 (671)
.+...|++++|..+.+.+ ..||...+...+ .+.|..+.+..-+.+|...+.|....
T Consensus 48 SLmNrG~Yq~Al~l~~~~----~~pdlepw~ALce~rlGl~s~l~~rl~rla~sg~p~lq~ 104 (115)
T TIGR02508 48 SLMNRGDYQSALQLGNKL----CYPDLEPWLALCEWRLGLGSALESRLNRLAASGDPRLQT 104 (115)
T ss_pred HHHccchHHHHHHhcCCC----CCchHHHHHHHHHHhhccHHHHHHHHHHHHhCCCHHHHH
Confidence 345566666666665544 356666665555 35666665555555555555444433
No 288
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=79.39 E-value=20 Score=34.51 Aligned_cols=107 Identities=17% Similarity=0.113 Sum_probs=72.5
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCC
Q 042546 472 SGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEK--EGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPW 549 (671)
Q Consensus 472 ~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~ 549 (671)
.|......+...++..-....+++.+...+-+++.. ....|+...+ ++++.+. .-+.+++..++..=.. +|+-||
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~-~~irlll-ky~pq~~i~~l~npIq-YGiF~d 134 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIH-TWIRLLL-KYDPQKAIYTLVNPIQ-YGIFPD 134 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHH-HHHHHHH-ccChHHHHHHHhCcch-hccccc
Confidence 344445556666666666677888888887777651 1122332222 2333333 3456677777776655 799999
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 042546 550 HTTYEELIKNLLVQRGFKDALSLLCLMKDHGF 581 (671)
Q Consensus 550 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~ 581 (671)
..+++.+|+.+.+.+++.+|.++.-.|.....
T Consensus 135 qf~~c~l~D~flk~~n~~~aa~vvt~~~~qe~ 166 (418)
T KOG4570|consen 135 QFTFCLLMDSFLKKENYKDAASVVTEVMMQEA 166 (418)
T ss_pred hhhHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999888775543
No 289
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=79.11 E-value=19 Score=27.97 Aligned_cols=60 Identities=7% Similarity=0.005 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 042546 495 DKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELI 557 (671)
Q Consensus 495 ~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li 557 (671)
-++.+-++.+.. ..+.|+..+..+-+.+|.+.+++..|.++|+.++.|.+. +...|..++
T Consensus 24 we~rr~mN~l~~-~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~--~~~~y~~~l 83 (103)
T cd00923 24 WELRRGLNNLFG-YDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGA--HKEIYPYIL 83 (103)
T ss_pred HHHHHHHHHHhc-cccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC--chhhHHHHH
Confidence 344444555544 555666666666666666666666666666666554322 333454444
No 290
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=78.93 E-value=52 Score=30.02 Aligned_cols=199 Identities=18% Similarity=0.129 Sum_probs=131.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH-
Q 042546 409 AMLNSVLKALISVGRMGECNKILKAMEEG-GFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIK- 486 (671)
Q Consensus 409 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~- 486 (671)
..+......+...+.+..+...+...... ........+......+...+..+.+.+.+.........+ .........
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 138 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLALG 138 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHHH
Confidence 34556666777778888888777776642 224555667777777777888888888888887654333 122222223
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhc
Q 042546 487 GHCVAGDLDKAADCFQKMVEKEGT--SHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKP-WHTTYEELIKNLLVQ 563 (671)
Q Consensus 487 ~~~~~g~~~~a~~~~~~m~~~~g~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~ 563 (671)
.+...|+.+.+...+.+... ... ......+......+...++.+.+...+...... ... ....+..+-..+...
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 215 (291)
T COG0457 139 ALYELGDYEEALELYEKALE-LDPELNELAEALLALGALLEALGRYEEALELLEKALKL--NPDDDAEALLNLGLLYLKL 215 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHh-cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhh--CcccchHHHHHhhHHHHHc
Confidence 67888899999988888844 221 123334444444466788899999988888753 223 356777777788888
Q ss_pred CCHHHHHHHHHHHHhCCCCCC-H---HHHHHHHHhcCChHHHHHHHHHhhhCCC
Q 042546 564 RGFKDALSLLCLMKDHGFPPF-V---DPFIKYVSKSGTSDDAIAFLKGMTSKRF 613 (671)
Q Consensus 564 g~~~~A~~l~~~m~~~~~~p~-~---~t~~~~l~~~g~~~~A~~~~~~m~~~~~ 613 (671)
++.+.|...+...... .|+ . ......+...|..+++...+.......+
T Consensus 216 ~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (291)
T COG0457 216 GKYEEALEYYEKALEL--DPDNAEALYNLALLLLELGRYEEALEALEKALELDP 267 (291)
T ss_pred ccHHHHHHHHHHHHhh--CcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 8889999888888754 333 1 1123333466778888888887776543
No 291
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=78.88 E-value=64 Score=31.11 Aligned_cols=20 Identities=20% Similarity=0.479 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHhcCCHHHHH
Q 042546 479 KMWVSLIKGHCVAGDLDKAA 498 (671)
Q Consensus 479 ~~~~~li~~~~~~g~~~~a~ 498 (671)
.+|.-|+.++|..|+.+-.+
T Consensus 322 K~yaPLL~af~s~g~sEL~L 341 (412)
T KOG2297|consen 322 KQYAPLLAAFCSQGQSELEL 341 (412)
T ss_pred HhhhHHHHHHhcCChHHHHH
Confidence 45777777777777766443
No 292
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=77.57 E-value=33 Score=27.05 Aligned_cols=52 Identities=13% Similarity=0.174 Sum_probs=30.9
Q ss_pred CcccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 042546 385 KQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEE 436 (671)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 436 (671)
...|.-.+.+-++.+....+.|++.+..+.+.+|-+.+++..|.++|+..+.
T Consensus 22 ~~iD~we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~ 73 (108)
T PF02284_consen 22 PDIDGWELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKD 73 (108)
T ss_dssp TT--HHHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3334444555555555666777777777777777777777777777777664
No 293
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=77.01 E-value=99 Score=32.28 Aligned_cols=63 Identities=24% Similarity=0.251 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 042546 515 YAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMK 577 (671)
Q Consensus 515 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 577 (671)
.+=..+..++-+.|+.++|.+.|.+|.+.....-+......|+.++...+.+.++..++.+-.
T Consensus 260 y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYd 322 (539)
T PF04184_consen 260 YAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYD 322 (539)
T ss_pred hhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence 333446666677899999999998887643322234466678888888888888888888764
No 294
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=76.95 E-value=33 Score=26.74 Aligned_cols=48 Identities=17% Similarity=0.155 Sum_probs=33.1
Q ss_pred cHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 042546 388 DMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAME 435 (671)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 435 (671)
|.-.+.+-++.+......|++.+..+.+.+|-+.+++..|.++|+-.+
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 334455555666666677777777777777777777777777777665
No 295
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=76.37 E-value=51 Score=28.63 Aligned_cols=50 Identities=14% Similarity=0.187 Sum_probs=30.1
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 042546 419 ISVGRMGECNKILKAMEEGGFIASS---NMKSKIAFRLSSAGKKDEANEFMDHMEAS 472 (671)
Q Consensus 419 ~~~g~~~~A~~~~~~m~~~g~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 472 (671)
.+.++.+++..+++.+.-. .|.. .++... .+...|++.+|..+|+++.+.
T Consensus 21 l~~~~~~D~e~lL~ALrvL--RP~~~e~~~~~~~--l~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVL--RPEFPELDLFDGW--LHIVRGDWDDALRLLRELEER 73 (160)
T ss_pred HccCChHHHHHHHHHHHHh--CCCchHHHHHHHH--HHHHhCCHHHHHHHHHHHhcc
Confidence 4566777777777776643 2332 233332 245677777777777777654
No 296
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=76.29 E-value=1.5e+02 Score=33.87 Aligned_cols=27 Identities=11% Similarity=0.241 Sum_probs=22.4
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHh
Q 042546 338 TCVKVLGRFSERNMVKEAVDLYEFAMA 364 (671)
Q Consensus 338 t~~~li~~~~~~g~~~~a~~l~~~m~~ 364 (671)
-|..|+..|...|+.++|++++.+...
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d 532 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVD 532 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhc
Confidence 477888888888888888888888765
No 297
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=75.26 E-value=94 Score=34.03 Aligned_cols=201 Identities=9% Similarity=0.071 Sum_probs=112.8
Q ss_pred HHHHHHHHHHHcCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH----------HHHHHHHHHhcC
Q 042546 391 LFSKVVRVFRENGNVLTD---AMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNM----------KSKIAFRLSSAG 457 (671)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~----------~~~li~~~~~~g 457 (671)
.....+++|+..-..|++ .+...++-.|-...+++...++.+.+++ .||..- |.-.++---+-|
T Consensus 181 ~l~~~L~~mR~RlDnp~VL~~d~V~nlmlSyRDvQdY~amirLVe~Lk~---iP~t~~vve~~nv~f~YaFALNRRNr~G 257 (1226)
T KOG4279|consen 181 QLNDYLDKMRTRLDNPDVLHPDTVSNLMLSYRDVQDYDAMIRLVEDLKR---IPDTLKVVETHNVRFHYAFALNRRNRPG 257 (1226)
T ss_pred HHHHHHHHHHhhcCCccccCHHHHHHHHhhhccccchHHHHHHHHHHHh---CcchhhhhccCceEEEeeehhcccCCCc
Confidence 444566666665545544 3556666677778888888888888876 354322 222233333567
Q ss_pred CHHHHHHHHHHHHHCC--CCCCHHHH-----HH--HHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHH---HHHHHHHHH
Q 042546 458 KKDEANEFMDHMEASG--SDVGDKMW-----VS--LIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYA---IDLLVNTYC 525 (671)
Q Consensus 458 ~~~~A~~~~~~m~~~g--~~~~~~~~-----~~--li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~---~~~li~~~~ 525 (671)
+-++|++..-.|.+.. +.||.+.. .- +-+.|...+..+.|.++|++.-+ +.|+..+ +..|+.+-+
T Consensus 258 DRakAL~~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFe---veP~~~sGIN~atLL~aaG 334 (1226)
T KOG4279|consen 258 DRAKALNTVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFE---VEPLEYSGINLATLLRAAG 334 (1226)
T ss_pred cHHHHHHHHHHHHHhcCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhc---cCchhhccccHHHHHHHhh
Confidence 7888888877775432 46665432 21 22345566677888888888744 6666544 344443322
Q ss_pred hcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHhcCChHHHHHHH
Q 042546 526 SKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPFIKYVSKSGTSDDAIAFL 605 (671)
Q Consensus 526 ~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~t~~~~l~~~g~~~~A~~~~ 605 (671)
+ .++...++- .+ | ...++| +++.|.+++-.+.|+- .+|..+-.-++++.+|...-
T Consensus 335 ~--~Fens~Elq-~I----g-----mkLn~L---lgrKG~leklq~YWdV----------~~y~~asVLAnd~~kaiqAa 389 (1226)
T KOG4279|consen 335 E--HFENSLELQ-QI----G-----MKLNSL---LGRKGALEKLQEYWDV----------ATYFEASVLANDYQKAIQAA 389 (1226)
T ss_pred h--hccchHHHH-HH----H-----HHHHHH---hhccchHHHHHHHHhH----------HHhhhhhhhccCHHHHHHHH
Confidence 1 222222211 11 1 122333 4566766665555542 34444444567777777777
Q ss_pred HHhhhCCCCCHHHHHHH
Q 042546 606 KGMTSKRFPSMSVVLCL 622 (671)
Q Consensus 606 ~~m~~~~~p~~~~~~~l 622 (671)
+.|-+..+|....-+++
T Consensus 390 e~mfKLk~P~WYLkS~m 406 (1226)
T KOG4279|consen 390 EMMFKLKPPVWYLKSTM 406 (1226)
T ss_pred HHHhccCCceehHHHHH
Confidence 77777666665544443
No 298
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=75.13 E-value=75 Score=29.97 Aligned_cols=79 Identities=18% Similarity=0.206 Sum_probs=53.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 042546 410 MLNSVLKALISVGRMGECNKILKAMEEGG--FIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKG 487 (671)
Q Consensus 410 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~ 487 (671)
.|+.-+ .-.+.|++++|.+.|+.+..+. -+-...+--.++.++-+.+++++|...+++....-..-...-|..-|.+
T Consensus 37 LY~~g~-~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Ylkg 115 (254)
T COG4105 37 LYNEGL-TELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKG 115 (254)
T ss_pred HHHHHH-HHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHH
Confidence 344433 3457899999999999998653 1223455666777888999999999999998765433333445555555
Q ss_pred HH
Q 042546 488 HC 489 (671)
Q Consensus 488 ~~ 489 (671)
.+
T Consensus 116 Ls 117 (254)
T COG4105 116 LS 117 (254)
T ss_pred HH
Confidence 54
No 299
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=74.15 E-value=8.6 Score=24.08 Aligned_cols=27 Identities=19% Similarity=0.284 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 042546 444 NMKSKIAFRLSSAGKKDEANEFMDHME 470 (671)
Q Consensus 444 ~~~~~li~~~~~~g~~~~A~~~~~~m~ 470 (671)
.+++.|...|...|++++|..++++..
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 345555555556666666666555543
No 300
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=73.62 E-value=80 Score=29.56 Aligned_cols=205 Identities=12% Similarity=0.058 Sum_probs=98.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 042546 410 MLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHC 489 (671)
Q Consensus 410 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~ 489 (671)
.|--.-.+|-...++++|...+.+..+. .+-|..-|. ....+|.|--+.++|.+. .--+..|+-....|.
T Consensus 33 ~yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfh-------AAKayEqaamLake~~kl--sEvvdl~eKAs~lY~ 102 (308)
T KOG1585|consen 33 LYEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFH-------AAKAYEQAAMLAKELSKL--SEVVDLYEKASELYV 102 (308)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHH-------HHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHH
Confidence 3455556677778888888766655421 111111111 122344555555555432 111233566666777
Q ss_pred hcCCHHHHHHHHHHHHH-cCCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 042546 490 VAGDLDKAADCFQKMVE-KEGTSHAGY--AIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGF 566 (671)
Q Consensus 490 ~~g~~~~a~~~~~~m~~-~~g~~p~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~ 566 (671)
.+|..+-|-..+++.-+ ..++.|+.. .|.--+...-..++...|.+ .|...-..+.+..++
T Consensus 103 E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~e----------------l~gk~sr~lVrl~kf 166 (308)
T KOG1585|consen 103 ECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFE----------------LYGKCSRVLVRLEKF 166 (308)
T ss_pred HhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHH----------------HHHHhhhHhhhhHHh
Confidence 77777776666655433 013334321 12222222222222222222 233333445556666
Q ss_pred HHHHHHHHHHHh----CCCCCCH----HHHHHHHHhcCChHHHHHHHHHhhh----CCCCCHHHHHHHHHHHHHcCCHHH
Q 042546 567 KDALSLLCLMKD----HGFPPFV----DPFIKYVSKSGTSDDAIAFLKGMTS----KRFPSMSVVLCLFAAFFQARRHSE 634 (671)
Q Consensus 567 ~~A~~l~~~m~~----~~~~p~~----~t~~~~l~~~g~~~~A~~~~~~m~~----~~~p~~~~~~~l~~~~~~~g~~~~ 634 (671)
++|-..+.+-.. -.-.|+. ...+-++-...++..|++.++.-.. .++.+..+...|+.+| ..|+.|+
T Consensus 167 ~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~ 245 (308)
T KOG1585|consen 167 TEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEE 245 (308)
T ss_pred hHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHH
Confidence 665544443211 0011222 1113334456678888888876332 2334566777777776 4577777
Q ss_pred HHHHHHh
Q 042546 635 AQDLLSK 641 (671)
Q Consensus 635 A~~~~~~ 641 (671)
+.++...
T Consensus 246 ~~kvl~s 252 (308)
T KOG1585|consen 246 IKKVLSS 252 (308)
T ss_pred HHHHHcC
Confidence 7766543
No 301
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=73.16 E-value=6 Score=22.12 Aligned_cols=23 Identities=30% Similarity=0.372 Sum_probs=17.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHh
Q 042546 619 VLCLFAAFFQARRHSEAQDLLSK 641 (671)
Q Consensus 619 ~~~l~~~~~~~g~~~~A~~~~~~ 641 (671)
...+..++...|++++|..++++
T Consensus 4 ~~~la~~~~~~G~~~eA~~~l~~ 26 (26)
T PF07721_consen 4 RLALARALLAQGDPDEAERLLRR 26 (26)
T ss_pred HHHHHHHHHHcCCHHHHHHHHhC
Confidence 45677888888888888887753
No 302
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=72.99 E-value=92 Score=29.99 Aligned_cols=71 Identities=18% Similarity=0.166 Sum_probs=46.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----cCCCCCCHHHH
Q 042546 446 KSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVE----KEGTSHAGYAI 517 (671)
Q Consensus 446 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~----~~g~~p~~~~~ 517 (671)
.+.....|..+|.+.+|.++.+...... +.+...|-.++..++..|+--.+.+-++++.+ ..|+..|...+
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsie 356 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSIE 356 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhHH
Confidence 3455567777888888888877777654 45666777778888888876666666655532 24665555444
No 303
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=72.96 E-value=6.4 Score=23.79 Aligned_cols=23 Identities=17% Similarity=0.160 Sum_probs=12.0
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHH
Q 042546 441 ASSNMKSKIAFRLSSAGKKDEAN 463 (671)
Q Consensus 441 ~~~~~~~~li~~~~~~g~~~~A~ 463 (671)
-|...|+.+...|...|++++|+
T Consensus 11 ~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 11 NNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CCHHHHHHHHHHHHHCcCHHhhc
Confidence 34455555555555555555553
No 304
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=72.67 E-value=1.2e+02 Score=31.17 Aligned_cols=108 Identities=15% Similarity=0.149 Sum_probs=72.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCHHH---HHHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHH
Q 042546 551 TTYEELIKNLLVQRGFKDALSLLCLMKDHGF-PPFVDP---FIKYVSKSGTSDDAIAFLKGMTSKRFPSMSVVLCLFAAF 626 (671)
Q Consensus 551 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~-~p~~~t---~~~~l~~~g~~~~A~~~~~~m~~~~~p~~~~~~~l~~~~ 626 (671)
..|.+.+..-.+...++.|..+|-+..+.|+ .++... ++..+ ..|+...|-++|+.=....+.+..--.-.+.-+
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~-~~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fL 476 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYY-ATGDRATAYNIFELGLLKFPDSTLYKEKYLLFL 476 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHH-hcCCcchHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 4788888888888889999999999999884 344322 23322 467788899998865554433333334456777
Q ss_pred HHcCCHHHHHHHHHhchHhhhccHHHHHHHHhhh
Q 042546 627 FQARRHSEAQDLLSKCPRYVRNHADVLNLLYSKK 660 (671)
Q Consensus 627 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~l~~~m~ 660 (671)
.+-|+-+.|..+|+...+++... .+..++++|.
T Consensus 477 i~inde~naraLFetsv~r~~~~-q~k~iy~kmi 509 (660)
T COG5107 477 IRINDEENARALFETSVERLEKT-QLKRIYDKMI 509 (660)
T ss_pred HHhCcHHHHHHHHHHhHHHHHHh-hhhHHHHHHH
Confidence 88899899999998765554433 4455555553
No 305
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=72.66 E-value=1.6e+02 Score=32.58 Aligned_cols=63 Identities=6% Similarity=-0.153 Sum_probs=35.5
Q ss_pred CCChHHHHHHHHHHHHcCCCCC-----CHHHHHHHHHH--HHccCChHHHHHHHH--------HHHHcCCCCCHHHHH
Q 042546 278 GDEPKKALIFFRWAEESGFVKH-----DESSYNAMASV--LGREDCIDRFWKVLD--------EMRSKGYEMEMETCV 340 (671)
Q Consensus 278 ~~~~~~A~~~f~~~~~~~~~~~-----~~~~~~~li~~--~~~~g~~~~A~~~~~--------~m~~~g~~p~~~t~~ 340 (671)
.+++..|......+.....-.| ....+...+.| +-..|+.+.|+..|. .....+...+..++.
T Consensus 374 ~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila 451 (608)
T PF10345_consen 374 RGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILA 451 (608)
T ss_pred CcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHH
Confidence 4778788888877764321122 22333333333 334588999999997 444445444544444
No 306
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=72.55 E-value=8.9 Score=24.00 Aligned_cols=29 Identities=14% Similarity=0.148 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHccCcHHHHHHHHHHHHH
Q 042546 164 SKTYNLMLRIVGVHGLVQEFWGLVDVMKK 192 (671)
Q Consensus 164 ~~~~n~li~~~~~~g~~~~a~~l~~~m~~ 192 (671)
..+++.|-..|...|++++|..++++...
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 35788899999999999999999988754
No 307
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=72.42 E-value=1.4e+02 Score=31.87 Aligned_cols=427 Identities=10% Similarity=0.016 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHcCCCCChHHHHHHHHH
Q 042546 163 SSKTYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRNKMTEKFEKEGLESDLEKLKGIFATGSIDNSIEKVASRIC 242 (671)
Q Consensus 163 ~~~~~n~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (671)
+-..|+++|.---....++.+...+..+... .|...-|=.-..-+-..=
T Consensus 44 ~f~~wt~li~~~~~~~~~~~~r~~y~~fL~k--yPl~~gyW~kfA~~E~kl----------------------------- 92 (577)
T KOG1258|consen 44 DFDAWTTLIQENDSIEDVDALREVYDIFLSK--YPLCYGYWKKFADYEYKL----------------------------- 92 (577)
T ss_pred cccchHHHHhccCchhHHHHHHHHHHHHHhh--CccHHHHHHHHHHHHHHh-----------------------------
Q ss_pred HHHhcCCChhHHHHHHhhcccccChHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHcc-CChHHHH
Q 042546 243 KVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGRE-DCIDRFW 321 (671)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~ 321 (671)
|..+.+.++|++-. .|++-++..|...+..+... |+.+...
T Consensus 93 ------------------------------------g~~~~s~~Vfergv--~aip~SvdlW~~Y~~f~~n~~~d~~~lr 134 (577)
T KOG1258|consen 93 ------------------------------------GNAENSVKVFERGV--QAIPLSVDLWLSYLAFLKNNNGDPETLR 134 (577)
T ss_pred ------------------------------------hhHHHHHHHHHHHH--HhhhhHHHHHHHHHHHHhccCCCHHHHH
Q ss_pred HHHHHHHHc-CCCC-CHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHH
Q 042546 322 KVLDEMRSK-GYEM-EMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVF 399 (671)
Q Consensus 322 ~~~~~m~~~-g~~p-~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~ 399 (671)
+.|+..... |..- ....|...|.--...+++.....++++.++....-=...|...............-...++.+..
T Consensus 135 ~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l~ 214 (577)
T KOG1258|consen 135 DLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLHQLNRHFDRFKQLLNQNEEKILLSIDELIQLR 214 (577)
T ss_pred HHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhcCChhhhcCHHHHHHHh
Q ss_pred HHcCCC--------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 042546 400 RENGNV--------LTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEA 471 (671)
Q Consensus 400 ~~~~~~--------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 471 (671)
..-... |....=.-+-..-...+..+++.....+.. ..-..+|+--..-..+.-..|+..+---.+.+
T Consensus 215 ~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~----~~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvk 290 (577)
T KOG1258|consen 215 SDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIV----SIHEKVYQKSEEEEEKRWGFEEGIKRPYFHVK 290 (577)
T ss_pred hhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHH----HHHHHHHHhhHhHHHHHHhhhhhccccccccC
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHH
Q 042546 472 SGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHT 551 (671)
Q Consensus 472 ~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~ 551 (671)
--..++..+|+.-+.--.+.|+.+.+.-+|++..- .+.--...|--.+.-....|+.+-|..++..-.+ -..|...
T Consensus 291 pl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli--~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~--i~~k~~~ 366 (577)
T KOG1258|consen 291 PLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLI--PCALYDEFWIKYARWMESSGDVSLANNVLARACK--IHVKKTP 366 (577)
T ss_pred cccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHh--HHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhh--hcCCCCc
Q ss_pred HHHHHHHHHHh-cCCHHHHHHHHHHHHhCCCCCCHHHH----HHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHH
Q 042546 552 TYEELIKNLLV-QRGFKDALSLLCLMKDHGFPPFVDPF----IKYVSKSGTSDDAIAFLKGMTSKRFPSMSVVLCLFAAF 626 (671)
Q Consensus 552 ~~~~li~~~~~-~g~~~~A~~l~~~m~~~~~~p~~~t~----~~~l~~~g~~~~A~~~~~~m~~~~~p~~~~~~~l~~~~ 626 (671)
....+=..+.. .|+++.|..+++...+.- |+..-. +....+.|..+.+.. ..+..+...++..++..+-..+
T Consensus 367 ~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~-~~~l~s~~~~~~~~~~i~~~l~ 443 (577)
T KOG1258|consen 367 IIHLLEARFEESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDANY-KNELYSSIYEGKENNGILEKLY 443 (577)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhH-HHHHHHHhcccccCcchhHHHH
Q ss_pred HH--------cCCHHHHHHHHHhchHhhhccHHH---HHHHHhhhcCCCCCCCc
Q 042546 627 FQ--------ARRHSEAQDLLSKCPRYVRNHADV---LNLLYSKKSGGDSAPAV 669 (671)
Q Consensus 627 ~~--------~g~~~~A~~~~~~m~~~~~~~~~~---~~l~~~m~~~g~~p~~~ 669 (671)
.+ .++.+.|..++.++.+..+..... ..-|..+...+.+-|..
T Consensus 444 ~~~~r~~~~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~e~d~~ 497 (577)
T KOG1258|consen 444 VKFARLRYKIREDADLARIILLEANDILPDCKVLYLELIRFELIQPSGREYDLL 497 (577)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCCcchhhhhh
No 308
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=72.03 E-value=1.1e+02 Score=30.64 Aligned_cols=60 Identities=23% Similarity=0.206 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-----CCCH-HHHHHHHHhcCChHHHHHHHHHhhh
Q 042546 551 TTYEELIKNLLVQRGFKDALSLLCLMKDHGF-----PPFV-DPFIKYVSKSGTSDDAIAFLKGMTS 610 (671)
Q Consensus 551 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~-----~p~~-~t~~~~l~~~g~~~~A~~~~~~m~~ 610 (671)
.+|..+...+.+.|.++.|...+..+...+. .|.. ..+...+-..|+-++|...++...+
T Consensus 147 ~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 147 ETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3455555555555555555555555544221 1111 1224444455555555555544443
No 309
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=71.65 E-value=9.6 Score=22.54 Aligned_cols=28 Identities=21% Similarity=0.216 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhchH
Q 042546 617 SVVLCLFAAFFQARRHSEAQDLLSKCPR 644 (671)
Q Consensus 617 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 644 (671)
..|..+...|.+.|++++|.+.+++...
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4567788888888999998888887553
No 310
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=71.49 E-value=9.3 Score=22.74 Aligned_cols=28 Identities=21% Similarity=0.207 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhchH
Q 042546 617 SVVLCLFAAFFQARRHSEAQDLLSKCPR 644 (671)
Q Consensus 617 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 644 (671)
..|..+..+|...|++++|++.+++..+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 5688899999999999999999988654
No 311
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=71.09 E-value=66 Score=27.49 Aligned_cols=81 Identities=7% Similarity=0.087 Sum_probs=41.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCC----CCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHhCCCCCCHHHHHH
Q 042546 481 WVSLIKGHCVAGDLDKAADCFQKMVEKEG----TSHAGYAIDLLVNTYCSKNR-AIDACKFVHNCVREYDLKPWHTTYEE 555 (671)
Q Consensus 481 ~~~li~~~~~~g~~~~a~~~~~~m~~~~g----~~p~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~~~~~p~~~~~~~ 555 (671)
.|.++.-.+..+...-...+++.+..-.. -..+..+|.+++.+.++... ---+..+|+-|++ .+.+++..-|..
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~-~~~~~t~~dy~~ 120 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKK-NDIEFTPSDYSC 120 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHH-cCCCCCHHHHHH
Confidence 45555555555555555555554432000 01233446666666655444 3335555666654 355666666666
Q ss_pred HHHHHHh
Q 042546 556 LIKNLLV 562 (671)
Q Consensus 556 li~~~~~ 562 (671)
||.++.+
T Consensus 121 li~~~l~ 127 (145)
T PF13762_consen 121 LIKAALR 127 (145)
T ss_pred HHHHHHc
Confidence 6666544
No 312
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=71.06 E-value=97 Score=33.04 Aligned_cols=98 Identities=18% Similarity=0.277 Sum_probs=47.5
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 042546 455 SAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDAC 534 (671)
Q Consensus 455 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 534 (671)
+.|+++.|.++..+.. +..-|..|-++..+.+++..|.+.|.+... |..|+-.+...|+.+.-.
T Consensus 649 ~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d----------~~~LlLl~t~~g~~~~l~ 712 (794)
T KOG0276|consen 649 KLGRLDIAFDLAVEAN------SEVKWRQLGDAALSAGELPLASECFLRARD----------LGSLLLLYTSSGNAEGLA 712 (794)
T ss_pred hcCcHHHHHHHHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhcc----------hhhhhhhhhhcCChhHHH
Confidence 4555555555544322 344566666666666666666666655543 344555555555554433
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 042546 535 KFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCL 575 (671)
Q Consensus 535 ~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~ 575 (671)
.+-....+. |. + |.-.-+|...|+++++++++.+
T Consensus 713 ~la~~~~~~-g~--~----N~AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 713 VLASLAKKQ-GK--N----NLAFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred HHHHHHHhh-cc--c----chHHHHHHHcCCHHHHHHHHHh
Confidence 333333321 21 1 1122234455666666555443
No 313
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=70.79 E-value=45 Score=30.18 Aligned_cols=71 Identities=8% Similarity=0.079 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH---CCCCCCHHHHHHHHHHHHhcCCHHHH
Q 042546 426 ECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEA---SGSDVGDKMWVSLIKGHCVAGDLDKA 497 (671)
Q Consensus 426 ~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~g~~~~~~~~~~li~~~~~~g~~~~a 497 (671)
.|.+.|-.+...+.--++.....|..-|. ..+.+++..++.+..+ .+-.+|+..+.+|.+.+-+.|+.+.|
T Consensus 124 ~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 124 EALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 44444444444433333333333333222 3344444444444332 11133344444444444444444433
No 314
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=70.38 E-value=14 Score=21.98 Aligned_cols=25 Identities=16% Similarity=0.133 Sum_probs=10.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 042546 446 KSKIAFRLSSAGKKDEANEFMDHME 470 (671)
Q Consensus 446 ~~~li~~~~~~g~~~~A~~~~~~m~ 470 (671)
|..+...|...|++++|+..|++..
T Consensus 4 ~~~~g~~~~~~~~~~~A~~~~~~al 28 (34)
T PF00515_consen 4 YYNLGNAYFQLGDYEEALEYYQRAL 28 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHH
Confidence 3344444444444444444444443
No 315
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=70.33 E-value=75 Score=28.50 Aligned_cols=105 Identities=19% Similarity=0.192 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCCCHHHHHHHHH-HHHhcCC--HHHHH
Q 042546 495 DKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREY-DLKPWHTTYEELIK-NLLVQRG--FKDAL 570 (671)
Q Consensus 495 ~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~~p~~~~~~~li~-~~~~~g~--~~~A~ 570 (671)
+++.++-+++.. ++...-...+.|++++|.+-++.+.+.- .++--...|..+.. +++.++. +-+|.
T Consensus 20 EE~l~lsRei~r----------~s~~aI~~~H~~~~eeA~~~l~~a~~~v~~Lk~~l~~~pel~~ag~~~~a~QEyvEA~ 89 (204)
T COG2178 20 EEALKLSREIVR----------LSGEAIFLLHRGDFEEAEKKLKKASEAVEKLKRLLAGFPELYFAGFVTTALQEYVEAT 89 (204)
T ss_pred HHHHHHHHHHHH----------HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcchHHHHHHHH
Confidence 455555555544 2333333456677777766666554320 01111223334443 4555443 34555
Q ss_pred HHHHHHHhCCCCCCH-------HHHHHHHH--------------hcCChHHHHHHHHHhhh
Q 042546 571 SLLCLMKDHGFPPFV-------DPFIKYVS--------------KSGTSDDAIAFLKGMTS 610 (671)
Q Consensus 571 ~l~~~m~~~~~~p~~-------~t~~~~l~--------------~~g~~~~A~~~~~~m~~ 610 (671)
-++.-.... ..|+. ..|+.+++ +.|+++.|..+++-|.+
T Consensus 90 ~l~~~l~~~-~~ps~~EL~V~~~~YilGl~D~vGELrR~~le~l~~~~~~~Ae~~~~~ME~ 149 (204)
T COG2178 90 LLYSILKDG-RLPSPEELGVPPIAYILGLADAVGELRRHVLELLRKGSFEEAERFLKFMEK 149 (204)
T ss_pred HHHHHHhcC-CCCCHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 555555443 33433 34555543 57888888888888765
No 316
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=70.32 E-value=68 Score=27.39 Aligned_cols=90 Identities=16% Similarity=0.138 Sum_probs=40.1
Q ss_pred HHcCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHH
Q 042546 400 RENGNVLTDA--MLNSVLKALISVGRMGECNKILKAMEEGG-----FIASSNMKSKIAFRLSSAGK-KDEANEFMDHMEA 471 (671)
Q Consensus 400 ~~~~~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~g-----~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~ 471 (671)
.+.+..++.. ..|.++.-.+..+++.....+++.+..-. -..+..+|.+++.+.++..- --.+..+|..|++
T Consensus 29 ~~~~~~~~~k~~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~ 108 (145)
T PF13762_consen 29 QEENASQSTKTIFINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKK 108 (145)
T ss_pred hhcccChhHHHHHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHH
Confidence 3334444432 35666666666666666666666553110 01222334444444433333 2233444444444
Q ss_pred CCCCCCHHHHHHHHHHHH
Q 042546 472 SGSDVGDKMWVSLIKGHC 489 (671)
Q Consensus 472 ~g~~~~~~~~~~li~~~~ 489 (671)
.+.+++..-|..+|.++.
T Consensus 109 ~~~~~t~~dy~~li~~~l 126 (145)
T PF13762_consen 109 NDIEFTPSDYSCLIKAAL 126 (145)
T ss_pred cCCCCCHHHHHHHHHHHH
Confidence 444444444444444433
No 317
>PHA02875 ankyrin repeat protein; Provisional
Probab=69.63 E-value=1.4e+02 Score=30.86 Aligned_cols=204 Identities=10% Similarity=0.003 Sum_probs=98.3
Q ss_pred CChHHHHHHHHHHHHcCCCCCCHHH--HHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHhCCChHH
Q 042546 279 DEPKKALIFFRWAEESGFVKHDESS--YNAMASVLGREDCIDRFWKVLDEMRSKGYEMEME--TCVKVLGRFSERNMVKE 354 (671)
Q Consensus 279 ~~~~~A~~~f~~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~li~~~~~~g~~~~ 354 (671)
|+.+.+..+++ .|..|+... ..+.+...++.|+.+ +.+.+.+.|..|+.. ...+.+...+..|+.+.
T Consensus 13 g~~~iv~~Ll~-----~g~~~n~~~~~g~tpL~~A~~~~~~~----~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~ 83 (413)
T PHA02875 13 GELDIARRLLD-----IGINPNFEIYDGISPIKLAMKFRDSE----AIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKA 83 (413)
T ss_pred CCHHHHHHHHH-----CCCCCCccCCCCCCHHHHHHHcCCHH----HHHHHHhCCCCccccCCCcccHHHHHHHCCCHHH
Confidence 66665555554 455555432 334455556677765 344445566555432 11234555667788776
Q ss_pred HHHHHHHHHhCCCCCCHHH---HHHHHHHHHhcCcccHHHHHHHHHHHHHcCCCCCHHH--HHHHHHHHHhcCCHHHHHH
Q 042546 355 AVDLYEFAMACKNKPSVNC---CTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAM--LNSVLKALISVGRMGECNK 429 (671)
Q Consensus 355 a~~l~~~m~~~g~~p~~~~---~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~A~~ 429 (671)
+..+++ .|...+... -.+.+...+..+.. ++++.+.+.|..++... -.+.+...+..|+.+-+..
T Consensus 84 v~~Ll~----~~~~~~~~~~~~g~tpL~~A~~~~~~------~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~ 153 (413)
T PHA02875 84 VEELLD----LGKFADDVFYKDGMTPLHLATILKKL------DIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIEL 153 (413)
T ss_pred HHHHHH----cCCcccccccCCCCCHHHHHHHhCCH------HHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHH
Confidence 655554 232211100 11222223333322 35555556666654331 2234455566777665444
Q ss_pred HHHHHHHCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH---HHHHHHHHHhcCCHHHHHHHHHH
Q 042546 430 ILKAMEEGGFIASS---NMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKM---WVSLIKGHCVAGDLDKAADCFQK 503 (671)
Q Consensus 430 ~~~~m~~~g~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~---~~~li~~~~~~g~~~~a~~~~~~ 503 (671)
++ +.|..++. .-++ .+...+..|+.+ +.+.+.+.|..++... ..+++...+..|+.+-+ +.
T Consensus 154 Ll----~~g~~~~~~d~~g~T-pL~~A~~~g~~e----iv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~iv----~~ 220 (413)
T PHA02875 154 LI----DHKACLDIEDCCGCT-PLIIAMAKGDIA----ICKMLLDSGANIDYFGKNGCVAALCYAIENNKIDIV----RL 220 (413)
T ss_pred HH----hcCCCCCCCCCCCCC-HHHHHHHcCCHH----HHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHHHH----HH
Confidence 44 34433322 1222 233344556654 3444556676665433 12455545566766543 44
Q ss_pred HHHcCCCCCCHH
Q 042546 504 MVEKEGTSHAGY 515 (671)
Q Consensus 504 m~~~~g~~p~~~ 515 (671)
+.+ .|..++..
T Consensus 221 Ll~-~gad~n~~ 231 (413)
T PHA02875 221 FIK-RGADCNIM 231 (413)
T ss_pred HHH-CCcCcchH
Confidence 445 67766643
No 318
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=67.47 E-value=1.2e+02 Score=29.08 Aligned_cols=51 Identities=10% Similarity=0.036 Sum_probs=35.1
Q ss_pred HHHHHHccCcHHHHHHHHHHHHHcCCCCCHHHH-------HHHHHHHHHcCChhHHHH
Q 042546 170 MLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVR-------NKMTEKFEKEGLESDLEK 220 (671)
Q Consensus 170 li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~-------~~ll~~~~~~g~~~~~~~ 220 (671)
+....++.+++++|+..+.+....|+..|..+. ..+...|.+.|+..+..+
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~ 66 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGD 66 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHH
Confidence 344566778888999999999888887775544 445556666666555443
No 319
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=66.68 E-value=62 Score=25.49 Aligned_cols=49 Identities=10% Similarity=0.068 Sum_probs=20.8
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 042546 419 ISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASG 473 (671)
Q Consensus 419 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 473 (671)
...|++++|..+.+.+. .||...|-+|-. .+.|..+++..-+.+|..+|
T Consensus 50 mNrG~Yq~Al~l~~~~~----~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg 98 (115)
T TIGR02508 50 MNRGDYQSALQLGNKLC----YPDLEPWLALCE--WRLGLGSALESRLNRLAASG 98 (115)
T ss_pred HccchHHHHHHhcCCCC----CchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC
Confidence 34444444444444432 344444443332 23444444444444444443
No 320
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=65.90 E-value=2.1 Score=36.66 Aligned_cols=128 Identities=12% Similarity=0.172 Sum_probs=71.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 042546 484 LIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQ 563 (671)
Q Consensus 484 li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~ 563 (671)
+|+.+.+.+..+....+++.+.. .+...+....+.++..|++.++.++..++++... ...+ ..+++.|.+.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~-~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~---~yd~-----~~~~~~c~~~ 83 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVK-ENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSN---NYDL-----DKALRLCEKH 83 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHH-TSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSS---SS-C-----THHHHHHHTT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHh-cccccCHHHHHHHHHHHHhcCCchHHHHHccccc---ccCH-----HHHHHHHHhc
Confidence 45566666777777777777776 5555567777777777777777677776666221 2222 2456666777
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCC
Q 042546 564 RGFKDALSLLCLMKDHGFPPFVDPFIKYVSKSGTSDDAIAFLKGMTSKRFPSMSVVLCLFAAFFQARR 631 (671)
Q Consensus 564 g~~~~A~~l~~~m~~~~~~p~~~t~~~~l~~~g~~~~A~~~~~~m~~~~~p~~~~~~~l~~~~~~~g~ 631 (671)
|.+++|.-++.++....-- +..+...++++.|.+++.+ .++...|..+++.+...+.
T Consensus 84 ~l~~~a~~Ly~~~~~~~~a------l~i~~~~~~~~~a~e~~~~-----~~~~~l~~~l~~~~l~~~~ 140 (143)
T PF00637_consen 84 GLYEEAVYLYSKLGNHDEA------LEILHKLKDYEEAIEYAKK-----VDDPELWEQLLKYCLDSKP 140 (143)
T ss_dssp TSHHHHHHHHHCCTTHTTC------SSTSSSTHCSCCCTTTGGG-----CSSSHHHHHHHHHHCTSTC
T ss_pred chHHHHHHHHHHcccHHHH------HHHHHHHccHHHHHHHHHh-----cCcHHHHHHHHHHHHhcCc
Confidence 7777777666654221100 0112233444444432222 2456777777777766554
No 321
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=65.78 E-value=22 Score=23.64 Aligned_cols=38 Identities=18% Similarity=0.442 Sum_probs=30.1
Q ss_pred HHHHHccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 042546 171 LRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRNKMTEK 208 (671)
Q Consensus 171 i~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~ 208 (671)
+....+.|-..++..++++|.+.|+..+...+..++..
T Consensus 9 L~~Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~~ 46 (48)
T PF11848_consen 9 LLLAKRRGLISEVKPLLDRLQQAGFRISPKLIEEILRR 46 (48)
T ss_pred HHHHHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHHH
Confidence 34456778888888899999999988888888877753
No 322
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=65.33 E-value=77 Score=33.75 Aligned_cols=45 Identities=9% Similarity=-0.058 Sum_probs=25.8
Q ss_pred ccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHH
Q 042546 313 REDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAM 363 (671)
Q Consensus 313 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~ 363 (671)
+.|+++.|.++..+.. ++.-|..|-++..+.+++..|.+.|....
T Consensus 649 ~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~ 693 (794)
T KOG0276|consen 649 KLGRLDIAFDLAVEAN------SEVKWRQLGDAALSAGELPLASECFLRAR 693 (794)
T ss_pred hcCcHHHHHHHHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhc
Confidence 4455555555444332 45556666666666666666666666544
No 323
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=64.92 E-value=15 Score=21.76 Aligned_cols=28 Identities=18% Similarity=0.068 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhchH
Q 042546 617 SVVLCLFAAFFQARRHSEAQDLLSKCPR 644 (671)
Q Consensus 617 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 644 (671)
.+|..+...|.+.|++++|.+.|++..+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4678889999999999999999998653
No 324
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=64.47 E-value=2.2e+02 Score=31.11 Aligned_cols=27 Identities=11% Similarity=0.260 Sum_probs=17.1
Q ss_pred CCHHHHHHHHHHHHccCcHHHHHHHHHH
Q 042546 162 LSSKTYNLMLRIVGVHGLVQEFWGLVDV 189 (671)
Q Consensus 162 ~~~~~~n~li~~~~~~g~~~~a~~l~~~ 189 (671)
.+..-|+ .|..+.-.|.+++|.+++..
T Consensus 147 ~~p~FW~-~v~~lvlrG~~~~a~~lL~~ 173 (566)
T PF07575_consen 147 HDPDFWD-YVQRLVLRGLFDQARQLLRL 173 (566)
T ss_dssp GSHHHHH-HHHHHHHTT-HHHHHHHH-T
T ss_pred cchhHHH-HHHHHHHcCCHHHHHHHHHh
Confidence 3456676 56677777778877777733
No 325
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=64.10 E-value=21 Score=20.94 Aligned_cols=22 Identities=18% Similarity=0.282 Sum_probs=9.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHH
Q 042546 449 IAFRLSSAGKKDEANEFMDHME 470 (671)
Q Consensus 449 li~~~~~~g~~~~A~~~~~~m~ 470 (671)
+-..|.+.|++++|.+.|++..
T Consensus 7 lg~~~~~~~~~~~A~~~~~~al 28 (34)
T PF07719_consen 7 LGQAYYQLGNYEEAIEYFEKAL 28 (34)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHH
Confidence 3344444444444444444433
No 326
>PF13934 ELYS: Nuclear pore complex assembly
Probab=63.96 E-value=75 Score=29.71 Aligned_cols=21 Identities=29% Similarity=0.275 Sum_probs=9.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHH
Q 042546 556 LIKNLLVQRGFKDALSLLCLM 576 (671)
Q Consensus 556 li~~~~~~g~~~~A~~l~~~m 576 (671)
++.++...|+.+.|+.+++.+
T Consensus 114 Il~~L~~~~~~~lAL~y~~~~ 134 (226)
T PF13934_consen 114 ILQALLRRGDPKLALRYLRAV 134 (226)
T ss_pred HHHHHHHCCChhHHHHHHHhc
Confidence 344444445555555544443
No 327
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=63.83 E-value=52 Score=33.77 Aligned_cols=120 Identities=8% Similarity=-0.010 Sum_probs=77.5
Q ss_pred HhcCCHHHH-HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHH
Q 042546 454 SSAGKKDEA-NEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAID 532 (671)
Q Consensus 454 ~~~g~~~~A-~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~ 532 (671)
...|++-.| .+++.-++...-.|+.+...+.| +...|+++.+.+.+....+ -+.....+..+++....+.|++++
T Consensus 300 ~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i--~~~lg~ye~~~~~~s~~~~--~~~s~~~~~~~~~r~~~~l~r~~~ 375 (831)
T PRK15180 300 LADGDIIAASQQLFAALRNQQQDPVLIQLRSVI--FSHLGYYEQAYQDISDVEK--IIGTTDSTLRCRLRSLHGLARWRE 375 (831)
T ss_pred hhccCHHHHHHHHHHHHHhCCCCchhhHHHHHH--HHHhhhHHHHHHHhhchhh--hhcCCchHHHHHHHhhhchhhHHH
Confidence 346666555 45566666555567766666555 4677888888888877654 344455677888888888888999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 042546 533 ACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDH 579 (671)
Q Consensus 533 A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 579 (671)
|...-..|... .++. ......-...--+.|-++++...|++...-
T Consensus 376 a~s~a~~~l~~-eie~-~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~ 420 (831)
T PRK15180 376 ALSTAEMMLSN-EIED-EEVLTVAAGSADALQLFDKSYHYWKRVLLL 420 (831)
T ss_pred HHHHHHHHhcc-ccCC-hhheeeecccHHHHhHHHHHHHHHHHHhcc
Confidence 88888887753 3332 222222222234467788888888887643
No 328
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=63.79 E-value=95 Score=26.63 Aligned_cols=66 Identities=15% Similarity=0.105 Sum_probs=40.1
Q ss_pred ccCChHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 042546 313 REDCIDRFWKVLDEMRSKGYEME---METCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSK 385 (671)
Q Consensus 313 ~~g~~~~A~~~~~~m~~~g~~p~---~~t~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~ 385 (671)
..++++++..+++.|.-. .|+ ..++...+ +.+.|++++|.++|++..+.+..+ .|..-+.++|-..
T Consensus 22 ~~~d~~D~e~lLdALrvL--rP~~~e~d~~dg~l--~i~rg~w~eA~rvlr~l~~~~~~~---p~~kAL~A~CL~a 90 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVL--RPNLKELDMFDGWL--LIARGNYDEAARILRELLSSAGAP---PYGKALLALCLNA 90 (153)
T ss_pred hcCCHHHHHHHHHHHHHh--CCCccccchhHHHH--HHHcCCHHHHHHHHHhhhccCCCc---hHHHHHHHHHHHh
Confidence 467788888888887754 343 33444333 567788888888888887653222 3444444444433
No 329
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=63.52 E-value=1.5e+02 Score=28.79 Aligned_cols=20 Identities=20% Similarity=0.203 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHhcCCHHHHH
Q 042546 551 TTYEELIKNLLVQRGFKDAL 570 (671)
Q Consensus 551 ~~~~~li~~~~~~g~~~~A~ 570 (671)
.+|.-|+.+++..|+.+-.+
T Consensus 322 K~yaPLL~af~s~g~sEL~L 341 (412)
T KOG2297|consen 322 KQYAPLLAAFCSQGQSELEL 341 (412)
T ss_pred HhhhHHHHHHhcCChHHHHH
Confidence 46677777777777766544
No 330
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=63.02 E-value=2.8e+02 Score=31.78 Aligned_cols=115 Identities=11% Similarity=0.152 Sum_probs=65.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCC---CCCHHHHHHHHHHHHhcCCH--HHHHHHHHHHHHCCCCCCHHHHHH--
Q 042546 411 LNSVLKALISVGRMGECNKILKAMEEGGF---IASSNMKSKIAFRLSSAGKK--DEANEFMDHMEASGSDVGDKMWVS-- 483 (671)
Q Consensus 411 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~---~~~~~~~~~li~~~~~~g~~--~~A~~~~~~m~~~g~~~~~~~~~~-- 483 (671)
|..|+..|...|+.++|++++.+.....- .--..-+--++.-+.+.+.. +-.+++-+...+....-....++.
T Consensus 507 y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~~ 586 (877)
T KOG2063|consen 507 YRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSED 586 (877)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeeccC
Confidence 89999999999999999999999876320 00011222244444444433 444444443332211100001111
Q ss_pred ----------HHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHh
Q 042546 484 ----------LIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCS 526 (671)
Q Consensus 484 ----------li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~ 526 (671)
-+-.|......+-+...++.+.. ..-.++....+.++..|++
T Consensus 587 ~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~-~~~~~~~~lht~ll~ly~e 638 (877)
T KOG2063|consen 587 KQEAESISRDDVLNYLKSKEPKLLIPYLEHLIS-DNRLTSTLLHTVLLKLYLE 638 (877)
T ss_pred hhhhccCCHHHHHHHhhhhCcchhHHHHHHHhH-hccccchHHHHHHHHHHHH
Confidence 12235566667777777887777 5556677777777777764
No 331
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=62.78 E-value=12 Score=26.55 Aligned_cols=49 Identities=8% Similarity=0.179 Sum_probs=31.6
Q ss_pred hHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhchHhhh
Q 042546 598 SDDAIAFLKGMTSKRFPSMSVVLCLFAAFFQARRHSEAQDLLSKCPRYVR 647 (671)
Q Consensus 598 ~~~A~~~~~~m~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 647 (671)
+++..++++.+... .-|....-.+|.+|...|++++|.++++++.....
T Consensus 6 ~~~~~~~~~~lR~~-RHD~~NhLqvI~gllqlg~~~~a~eYi~~~~~~~~ 54 (62)
T PF14689_consen 6 LEELEELIDSLRAQ-RHDFLNHLQVIYGLLQLGKYEEAKEYIKELSKDLQ 54 (62)
T ss_dssp HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 34445555555431 12455566788899999999999999888775443
No 332
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=62.02 E-value=30 Score=31.62 Aligned_cols=71 Identities=18% Similarity=0.188 Sum_probs=50.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHhcCChHHHHHHHHHhhh---CCCCCHHHHHHHHHH
Q 042546 553 YEELIKNLLVQRGFKDALSLLCLMKDHGFPPFV----DPFIKYVSKSGTSDDAIAFLKGMTS---KRFPSMSVVLCLFAA 625 (671)
Q Consensus 553 ~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~----~t~~~~l~~~g~~~~A~~~~~~m~~---~~~p~~~~~~~l~~~ 625 (671)
.+..++.+.+.+.+++|+.+.++-.+. +|.. ..+...||-.|++++|..-++-.-. ...+....|..+|.+
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVka--kPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKA--KPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhc--CCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 345567788889999999988876654 4543 3458889999999999877765554 333556677777764
No 333
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=61.76 E-value=2.6e+02 Score=31.05 Aligned_cols=73 Identities=15% Similarity=0.019 Sum_probs=52.9
Q ss_pred CCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhH
Q 042546 141 ESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRNKMTEKFEKEGLESD 217 (671)
Q Consensus 141 ~~~~~~A~~~f~~m~~~~~~~~~~~~~n~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~ 217 (671)
.+.+++|+..-+.......-..-...|-..|..+.-.|++++|-.+.-.|... +..-|.-.+.-++..++..+
T Consensus 369 ~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e~~~l~~ 441 (846)
T KOG2066|consen 369 KKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAELDQLTD 441 (846)
T ss_pred hhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhccccccch
Confidence 37888888877765441111013467889999999999999999999999876 67778777777777765444
No 334
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=61.61 E-value=95 Score=28.08 Aligned_cols=87 Identities=10% Similarity=0.063 Sum_probs=55.8
Q ss_pred HHHhcCCHHHHHHHHHHHHHhCCCCCCH-----HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH-HH---HHHHH
Q 042546 523 TYCSKNRAIDACKFVHNCVREYDLKPWH-----TTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVD-PF---IKYVS 593 (671)
Q Consensus 523 ~~~~~g~~~~A~~~~~~m~~~~~~~p~~-----~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~-t~---~~~l~ 593 (671)
-+.+.|++++|..-|.....- +++.. +.|.--..++.+.+.++.|++-..+.++. .|+.. .+ ..+|.
T Consensus 104 ~~F~ngdyeeA~skY~~Ale~--cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel--~pty~kAl~RRAeaye 179 (271)
T KOG4234|consen 104 ELFKNGDYEEANSKYQEALES--CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIEL--NPTYEKALERRAEAYE 179 (271)
T ss_pred HhhhcccHHHHHHHHHHHHHh--CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhc--CchhHHHHHHHHHHHH
Confidence 366788888888888888763 33322 23444445666788888888777766653 34321 12 34556
Q ss_pred hcCChHHHHHHHHHhhhCCC
Q 042546 594 KSGTSDDAIAFLKGMTSKRF 613 (671)
Q Consensus 594 ~~g~~~~A~~~~~~m~~~~~ 613 (671)
+...+++|+.=++.+....|
T Consensus 180 k~ek~eealeDyKki~E~dP 199 (271)
T KOG4234|consen 180 KMEKYEEALEDYKKILESDP 199 (271)
T ss_pred hhhhHHHHHHHHHHHHHhCc
Confidence 67778888888877777654
No 335
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=61.58 E-value=13 Score=21.66 Aligned_cols=25 Identities=12% Similarity=0.231 Sum_probs=18.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhchH
Q 042546 620 LCLFAAFFQARRHSEAQDLLSKCPR 644 (671)
Q Consensus 620 ~~l~~~~~~~g~~~~A~~~~~~m~~ 644 (671)
-.+..++.+.|++++|.+.|++..+
T Consensus 4 ~~~a~~~~~~g~~~~A~~~~~~~~~ 28 (33)
T PF13174_consen 4 YRLARCYYKLGDYDEAIEYFQRLIK 28 (33)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHH
Confidence 3456677778888888888877654
No 336
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=60.53 E-value=24 Score=34.11 Aligned_cols=47 Identities=23% Similarity=0.239 Sum_probs=34.3
Q ss_pred CCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 042546 546 LKPWHTTY-EELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPFIKYV 592 (671)
Q Consensus 546 ~~p~~~~~-~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~t~~~~l 592 (671)
+.||..+| +.-|..-.+.|++++|++++++.++.|+.--..+|+...
T Consensus 252 v~~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~V 299 (303)
T PRK10564 252 MLNDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISSV 299 (303)
T ss_pred cCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHHh
Confidence 44555554 577888888888888888888888888776666666543
No 337
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=60.14 E-value=1.7e+02 Score=28.33 Aligned_cols=118 Identities=9% Similarity=0.101 Sum_probs=66.6
Q ss_pred CCHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHh-cC-CHHHHHHHHHHHH-HCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 042546 422 GRMGECNKILKAMEE-GGFIASSNMKSKIAFRLSS-AG-KKDEANEFMDHME-ASGSDVGDKMWVSLIKGHCVAGDLDKA 497 (671)
Q Consensus 422 g~~~~A~~~~~~m~~-~g~~~~~~~~~~li~~~~~-~g-~~~~A~~~~~~m~-~~g~~~~~~~~~~li~~~~~~g~~~~a 497 (671)
..+.+|+++|+.... ..+.-|..+...+++.... .+ ....-.++.+-+. ..|-.++..+...+|..++..+++.+-
T Consensus 142 ~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl 221 (292)
T PF13929_consen 142 KIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKL 221 (292)
T ss_pred HHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHH
Confidence 345566666663321 2334555566666655544 22 2222233333332 223456666677777777777777777
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 042546 498 ADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHN 539 (671)
Q Consensus 498 ~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 539 (671)
.++++.-....+..-|...|..+|..-...|+..-..++.++
T Consensus 222 ~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~ 263 (292)
T PF13929_consen 222 FQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDD 263 (292)
T ss_pred HHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhC
Confidence 777776655224555666677777777777777666666553
No 338
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=59.89 E-value=1.3e+02 Score=26.88 Aligned_cols=49 Identities=14% Similarity=0.052 Sum_probs=23.8
Q ss_pred hHHHHHHHHHHHHcCCCCCCH-HH-----HHHHHHHHHccCChHHHHHHHHHHHH
Q 042546 281 PKKALIFFRWAEESGFVKHDE-SS-----YNAMASVLGREDCIDRFWKVLDEMRS 329 (671)
Q Consensus 281 ~~~A~~~f~~~~~~~~~~~~~-~~-----~~~li~~~~~~g~~~~A~~~~~~m~~ 329 (671)
++.|+.+|+.+.+....+-+. .. --..+..|.+.|.+++|.++++..-.
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhc
Confidence 567788888777643211000 11 11123345555555555555555544
No 339
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=57.84 E-value=2.2e+02 Score=29.01 Aligned_cols=157 Identities=11% Similarity=0.051 Sum_probs=97.5
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH--hcCCHHHHHHHHHHHHHCCCCCCHHHHHHH---------
Q 042546 416 KALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLS--SAGKKDEANEFMDHMEASGSDVGDKMWVSL--------- 484 (671)
Q Consensus 416 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~--~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l--------- 484 (671)
.++.-.|+.++|..+--...+.. ....+...+.+.+ ..++.+.|...|++.... .||...-.++
T Consensus 177 ~cl~~~~~~~~a~~ea~~ilkld---~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~l--dpdh~~sk~~~~~~k~le~ 251 (486)
T KOG0550|consen 177 ECLAFLGDYDEAQSEAIDILKLD---ATNAEALYVRGLCLYYNDNADKAINHFQQALRL--DPDHQKSKSASMMPKKLEV 251 (486)
T ss_pred hhhhhcccchhHHHHHHHHHhcc---cchhHHHHhcccccccccchHHHHHHHhhhhcc--ChhhhhHHhHhhhHHHHHH
Confidence 45566788888888776666532 1223334444333 467788888888887755 3443322221
Q ss_pred ----HHHHHhcCCHHHHHHHHHHHHH--cCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHH-HHHHHH
Q 042546 485 ----IKGHCVAGDLDKAADCFQKMVE--KEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHT-TYEELI 557 (671)
Q Consensus 485 ----i~~~~~~g~~~~a~~~~~~m~~--~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~-~~~~li 557 (671)
-.-..+.|.+..|.+.+.+... ..+.+|+...|.-......+.|+.++|..--++... + |.. ....+.
T Consensus 252 ~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~---i--D~syikall~ 326 (486)
T KOG0550|consen 252 KKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALK---I--DSSYIKALLR 326 (486)
T ss_pred HHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhh---c--CHHHHHHHHH
Confidence 1223577899999999988764 123455666676677777888999999888877654 2 322 223333
Q ss_pred HH--HHhcCCHHHHHHHHHHHHhCCCC
Q 042546 558 KN--LLVQRGFKDALSLLCLMKDHGFP 582 (671)
Q Consensus 558 ~~--~~~~g~~~~A~~l~~~m~~~~~~ 582 (671)
.+ +...++|++|.+-++...+..-.
T Consensus 327 ra~c~l~le~~e~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 327 RANCHLALEKWEEAVEDYEKAMQLEKD 353 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 33 33477888888888876654333
No 340
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=56.70 E-value=1.7e+02 Score=27.29 Aligned_cols=126 Identities=12% Similarity=0.104 Sum_probs=69.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCC
Q 042546 450 AFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNR 529 (671)
Q Consensus 450 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~ 529 (671)
+..|.+.-++.-|...++++.+ | ..+ ...|--|.+..+.+--.++.+-... .++.-+..-..++|- ...|+
T Consensus 137 MEiyS~ttRFalaCN~s~KIiE----P-IQS-RCAiLRysklsd~qiL~Rl~~v~k~-Ekv~yt~dgLeaiif--ta~GD 207 (333)
T KOG0991|consen 137 MEIYSNTTRFALACNQSEKIIE----P-IQS-RCAILRYSKLSDQQILKRLLEVAKA-EKVNYTDDGLEAIIF--TAQGD 207 (333)
T ss_pred HHHHcccchhhhhhcchhhhhh----h-HHh-hhHhhhhcccCHHHHHHHHHHHHHH-hCCCCCcchHHHhhh--hccch
Confidence 3445555555555555544432 1 111 1122234444444444444444443 455444444444442 35677
Q ss_pred HHHHHHHHHHHHHhCC-----------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 042546 530 AIDACKFVHNCVREYD-----------LKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFV 585 (671)
Q Consensus 530 ~~~A~~~~~~m~~~~~-----------~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~ 585 (671)
...|...++.-..-+| -.|.......|+..|. .+++++|.+++.++-+.|+.|..
T Consensus 208 MRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml~~~~-~~~~~~A~~il~~lw~lgysp~D 273 (333)
T KOG0991|consen 208 MRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKMLQACL-KRNIDEALKILAELWKLGYSPED 273 (333)
T ss_pred HHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHHHHHH-hccHHHHHHHHHHHHHcCCCHHH
Confidence 7777766665543222 2577777777777654 46799999999999999988864
No 341
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=56.27 E-value=35 Score=20.07 Aligned_cols=26 Identities=15% Similarity=0.178 Sum_probs=14.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 042546 445 MKSKIAFRLSSAGKKDEANEFMDHME 470 (671)
Q Consensus 445 ~~~~li~~~~~~g~~~~A~~~~~~m~ 470 (671)
+|..+-..|.+.|++++|.+.|++..
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~ 28 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKAL 28 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34445555555555555555555544
No 342
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=55.79 E-value=12 Score=31.12 Aligned_cols=31 Identities=19% Similarity=0.282 Sum_probs=26.4
Q ss_pred CCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHH
Q 042546 141 ESSPDEARRFFNWVLEKESERLSSKTYNLMLRIV 174 (671)
Q Consensus 141 ~~~~~~A~~~f~~m~~~~~~~~~~~~~n~li~~~ 174 (671)
.|.-.+|.++|.+|.+ .|..|| .|+.|+...
T Consensus 108 ygsk~DaY~VF~kML~-~G~pPd--dW~~Ll~~a 138 (140)
T PF11663_consen 108 YGSKTDAYAVFRKMLE-RGNPPD--DWDALLKEA 138 (140)
T ss_pred hccCCcHHHHHHHHHh-CCCCCc--cHHHHHHHh
Confidence 4778889999999999 887787 899998764
No 343
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=55.40 E-value=1.8e+02 Score=30.67 Aligned_cols=95 Identities=11% Similarity=0.102 Sum_probs=64.3
Q ss_pred HHHhhcccccChHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCC
Q 042546 256 RQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEME 335 (671)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 335 (671)
..+.+.|+.+++..+..+.+...|++.+|+.+++++.... ....++..+.. ++ |+ ++
T Consensus 191 ~i~~~Egi~~e~eAL~~Ia~~S~Gd~RdAL~lLeq~i~~~---~~~it~~~V~~-------------~l------g~-~~ 247 (484)
T PRK14956 191 KLCKIENVQYDQEGLFWIAKKGDGSVRDMLSFMEQAIVFT---DSKLTGVKIRK-------------MI------GY-HG 247 (484)
T ss_pred HHHHHcCCCCCHHHHHHHHHHcCChHHHHHHHHHHHHHhC---CCCcCHHHHHH-------------Hh------CC-CC
Confidence 3344567888999998888888899999999998765311 11223333222 11 33 25
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHH
Q 042546 336 METCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNC 373 (671)
Q Consensus 336 ~~t~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~ 373 (671)
...+..++.+....+....|+.++.+|.+.|..|....
T Consensus 248 ~~~~~~l~~si~~~d~~~~al~~l~~l~~~G~d~~~~~ 285 (484)
T PRK14956 248 IEFLTSFIKSLIDPDNHSKSLEILESLYQEGQDIYKFL 285 (484)
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCHHHHH
Confidence 66666777776666666789999999999888876553
No 344
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=55.32 E-value=1.9e+02 Score=27.29 Aligned_cols=60 Identities=13% Similarity=0.151 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHH--cCCCCC--HHHHHHHHHHHHhCCChHHHHHHHHH
Q 042546 302 SSYNAMASVLGREDCIDRFWKVLDEMRS--KGYEME--METCVKVLGRFSERNMVKEAVDLYEF 361 (671)
Q Consensus 302 ~~~~~li~~~~~~g~~~~A~~~~~~m~~--~g~~p~--~~t~~~li~~~~~~g~~~~a~~l~~~ 361 (671)
..|+--..+|..+|..+.|-..+++.-+ .++.|+ ...|.--+...-..++...|.+++..
T Consensus 92 dl~eKAs~lY~E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk 155 (308)
T KOG1585|consen 92 DLYEKASELYVECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGK 155 (308)
T ss_pred HHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHH
Confidence 3445556677777777766666655432 133443 22333333333334444444444433
No 345
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=55.20 E-value=3.1e+02 Score=29.85 Aligned_cols=156 Identities=12% Similarity=0.081 Sum_probs=88.6
Q ss_pred HHhcCCHHHHHHHHHHHHH-------CCCCCCHHHHHHHHHHHHhcC-----CHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 042546 418 LISVGRMGECNKILKAMEE-------GGFIASSNMKSKIAFRLSSAG-----KKDEANEFMDHMEASGSDVGDKMWVSLI 485 (671)
Q Consensus 418 ~~~~g~~~~A~~~~~~m~~-------~g~~~~~~~~~~li~~~~~~g-----~~~~A~~~~~~m~~~g~~~~~~~~~~li 485 (671)
+....+.+.|...|+.+.+ .| +.....-+-.+|.+.. +.+.|..++...-+.| .|+....-..+
T Consensus 259 ~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~ 334 (552)
T KOG1550|consen 259 YGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELG-NPDAQYLLGVL 334 (552)
T ss_pred ccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcC-CchHHHHHHHH
Confidence 4566778888888887765 44 2234555666666533 5677888888887777 45655544444
Q ss_pred HHHHh-cCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH--HhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 042546 486 KGHCV-AGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTY--CSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLV 562 (671)
Q Consensus 486 ~~~~~-~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~--~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~ 562 (671)
.-... ..+...|.++|...-+ .|..+-. -+.++.-.. .-..+.+.|..++.+..++ | .|-..--...+..+..
T Consensus 335 ~~~g~~~~d~~~A~~yy~~Aa~-~G~~~A~-~~la~~y~~G~gv~r~~~~A~~~~k~aA~~-g-~~~A~~~~~~~~~~g~ 410 (552)
T KOG1550|consen 335 YETGTKERDYRRAFEYYSLAAK-AGHILAI-YRLALCYELGLGVERNLELAFAYYKKAAEK-G-NPSAAYLLGAFYEYGV 410 (552)
T ss_pred HHcCCccccHHHHHHHHHHHHH-cCChHHH-HHHHHHHHhCCCcCCCHHHHHHHHHHHHHc-c-ChhhHHHHHHHHHHcc
Confidence 33333 3467788888888877 6653322 111111111 1234677788888888765 4 2221111222233333
Q ss_pred cCCHHHHHHHHHHHHhCCCC
Q 042546 563 QRGFKDALSLLCLMKDHGFP 582 (671)
Q Consensus 563 ~g~~~~A~~l~~~m~~~~~~ 582 (671)
++.+.+.-.+..+.+.|.+
T Consensus 411 -~~~~~~~~~~~~~a~~g~~ 429 (552)
T KOG1550|consen 411 -GRYDTALALYLYLAELGYE 429 (552)
T ss_pred -ccccHHHHHHHHHHHhhhh
Confidence 6666666666666655543
No 346
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=54.59 E-value=63 Score=29.28 Aligned_cols=32 Identities=16% Similarity=0.160 Sum_probs=16.6
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 042546 546 LKPWHTTYEELIKNLLVQRGFKDALSLLCLMK 577 (671)
Q Consensus 546 ~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 577 (671)
..|+..+|..++.++...|+.++|.++.+++.
T Consensus 140 ~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~ 171 (193)
T PF11846_consen 140 RRPDPNVYQRYALALALLGDPEEARQWLARAR 171 (193)
T ss_pred hCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34555555555555555555555555555544
No 347
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=54.00 E-value=26 Score=22.80 Aligned_cols=24 Identities=17% Similarity=0.270 Sum_probs=15.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHC
Q 042546 449 IAFRLSSAGKKDEANEFMDHMEAS 472 (671)
Q Consensus 449 li~~~~~~g~~~~A~~~~~~m~~~ 472 (671)
+..+|...|+.+.|.+++++....
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHc
Confidence 455666677777777777666643
No 348
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=53.79 E-value=99 Score=28.44 Aligned_cols=55 Identities=18% Similarity=0.110 Sum_probs=27.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 042546 449 IAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKM 504 (671)
Q Consensus 449 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 504 (671)
-++.+.+.+.+.+|+...++-.+.. +.|.-+-..++..+|-.|++++|..-++-.
T Consensus 7 t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~ 61 (273)
T COG4455 7 TISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLA 61 (273)
T ss_pred HHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHH
Confidence 3444445555555555555544432 223344455555566666666665544443
No 349
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=53.58 E-value=1.7e+02 Score=26.42 Aligned_cols=84 Identities=12% Similarity=0.054 Sum_probs=47.2
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH--------HHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHc
Q 042546 558 KNLLVQRGFKDALSLLCLMKDHGFPPFVDPF--------IKYVSKSGTSDDAIAFLKGMTSKRFPSMSVVLCLFAAFFQA 629 (671)
Q Consensus 558 ~~~~~~g~~~~A~~l~~~m~~~~~~p~~~t~--------~~~l~~~g~~~~A~~~~~~m~~~~~p~~~~~~~l~~~~~~~ 629 (671)
..+...|++++|..-++..... |....+ ..+....|.+|+|...++....... .......-.+++...
T Consensus 97 k~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w-~~~~~elrGDill~k 172 (207)
T COG2976 97 KAEVEANNLDKAEAQLKQALAQ---TKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW-AAIVAELRGDILLAK 172 (207)
T ss_pred HHHHhhccHHHHHHHHHHHHcc---chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH-HHHHHHHhhhHHHHc
Confidence 3455577777777766655532 222221 3344566777777777765544211 111233345777777
Q ss_pred CCHHHHHHHHHhchHh
Q 042546 630 RRHSEAQDLLSKCPRY 645 (671)
Q Consensus 630 g~~~~A~~~~~~m~~~ 645 (671)
|+.++|..-|.+....
T Consensus 173 g~k~~Ar~ay~kAl~~ 188 (207)
T COG2976 173 GDKQEARAAYEKALES 188 (207)
T ss_pred CchHHHHHHHHHHHHc
Confidence 7777777777765543
No 350
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=53.37 E-value=29 Score=22.55 Aligned_cols=24 Identities=17% Similarity=0.144 Sum_probs=15.2
Q ss_pred HHHHHHhCCChHHHHHHHHHHHhC
Q 042546 342 VLGRFSERNMVKEAVDLYEFAMAC 365 (671)
Q Consensus 342 li~~~~~~g~~~~a~~l~~~m~~~ 365 (671)
+..+|...|+.+.|.+++++....
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHc
Confidence 445666666666666666666643
No 351
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=53.14 E-value=1.8e+02 Score=26.38 Aligned_cols=87 Identities=15% Similarity=0.130 Sum_probs=51.8
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHH-----HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH-HHHHHhc
Q 042546 522 NTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEEL-----IKNLLVQRGFKDALSLLCLMKDHGFPPFVDPF-IKYVSKS 595 (671)
Q Consensus 522 ~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~l-----i~~~~~~g~~~~A~~l~~~m~~~~~~p~~~t~-~~~l~~~ 595 (671)
..+..+|++++|..-++..... |....+..+ .+...+.|.+|+|+.+++...+.+..+-..-+ -+.|...
T Consensus 97 k~~ve~~~~d~A~aqL~~~l~~----t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~k 172 (207)
T COG2976 97 KAEVEANNLDKAEAQLKQALAQ----TKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAK 172 (207)
T ss_pred HHHHhhccHHHHHHHHHHHHcc----chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHc
Confidence 3466677777777777665431 222333333 23455677778887777776655444322222 4666777
Q ss_pred CChHHHHHHHHHhhhCC
Q 042546 596 GTSDDAIAFLKGMTSKR 612 (671)
Q Consensus 596 g~~~~A~~~~~~m~~~~ 612 (671)
|+-++|+.-|+......
T Consensus 173 g~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 173 GDKQEARAAYEKALESD 189 (207)
T ss_pred CchHHHHHHHHHHHHcc
Confidence 77788887777766643
No 352
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=52.70 E-value=15 Score=30.60 Aligned_cols=31 Identities=13% Similarity=0.156 Sum_probs=23.0
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 042546 420 SVGRMGECNKILKAMEEGGFIASSNMKSKIAFR 452 (671)
Q Consensus 420 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~ 452 (671)
+.|.-.+|..+|..|.+.|-+||. |+.|+..
T Consensus 107 ~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~ 137 (140)
T PF11663_consen 107 AYGSKTDAYAVFRKMLERGNPPDD--WDALLKE 137 (140)
T ss_pred hhccCCcHHHHHHHHHhCCCCCcc--HHHHHHH
Confidence 446667788888888888888774 6777654
No 353
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=50.69 E-value=2.1e+02 Score=27.53 Aligned_cols=87 Identities=8% Similarity=-0.012 Sum_probs=45.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHh---
Q 042546 450 AFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCS--- 526 (671)
Q Consensus 450 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~--- 526 (671)
|.+++..+++.+++...-+--+.--+.-......-|-.|.+.++...+.++-..-.+ ..-.-+...|.+++..|..
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~-~p~Nq~lp~y~~vaELyLl~VL 168 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQ-DPSNQSLPEYGTVAELYLLHVL 168 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHh-CcccCCchhhHHHHHHHHHHHH
Confidence 566667777776665443332211112223333444456777777766666655554 2222233336666655543
Q ss_pred --cCCHHHHHHHH
Q 042546 527 --KNRAIDACKFV 537 (671)
Q Consensus 527 --~g~~~~A~~~~ 537 (671)
.|.+++|+++.
T Consensus 169 lPLG~~~eAeelv 181 (309)
T PF07163_consen 169 LPLGHFSEAEELV 181 (309)
T ss_pred hccccHHHHHHHH
Confidence 46777776665
No 354
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=50.59 E-value=64 Score=21.39 Aligned_cols=31 Identities=23% Similarity=0.442 Sum_probs=15.4
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 042546 420 SVGRMGECNKILKAMEEGGFIASSNMKSKIA 450 (671)
Q Consensus 420 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li 450 (671)
+.|-++++..++++|.+.|+.-+...|..++
T Consensus 14 ~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 14 RRGLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred HcCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 3444445555555555555554444444443
No 355
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=50.48 E-value=3.9e+02 Score=29.62 Aligned_cols=42 Identities=10% Similarity=-0.118 Sum_probs=28.5
Q ss_pred HHHHHhcCCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHc
Q 042546 134 LKVLKNLESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVGV 176 (671)
Q Consensus 134 ~~~l~~~~~~~~~A~~~f~~m~~~~~~~~~~~~~n~li~~~~~ 176 (671)
..++.- -|.+++|+.+--.......+.++...+.+++.-|..
T Consensus 66 SKVyy~-Lgeye~Al~yAL~ag~~F~Vd~~S~y~etivak~id 107 (929)
T KOG2062|consen 66 SKVYYY-LGEYEDALEYALRAGDDFDVDENSDYVETIVAKCID 107 (929)
T ss_pred HHHHHH-HHHHHHHHHHHHcCCccccccCccchhhHHHHHHHH
Confidence 344444 488999988776665445666777777777766653
No 356
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=49.68 E-value=1.1e+02 Score=30.02 Aligned_cols=53 Identities=11% Similarity=0.008 Sum_probs=38.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 042546 451 FRLSSAGKKDEANEFMDHMEASGSDV-GDKMWVSLIKGHCVAGDLDKAADCFQKMV 505 (671)
Q Consensus 451 ~~~~~~g~~~~A~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 505 (671)
+-|.+.|.+++|++.|..-... .| |.+++..-..+|.+...+..|+.=-....
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia~--~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~Ai 158 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIAV--YPHNPVYHINRALAYLKQKSFAQAEEDCEAAI 158 (536)
T ss_pred hhhhhccchhHHHHHhhhhhcc--CCCCccchhhHHHHHHHHHHHHHHHHhHHHHH
Confidence 4578888888888888776654 45 77888777778888877776665444443
No 357
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=49.32 E-value=1.2e+02 Score=25.10 Aligned_cols=45 Identities=7% Similarity=0.057 Sum_probs=28.6
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 042546 498 ADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVRE 543 (671)
Q Consensus 498 ~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 543 (671)
.+-++.... ..+.|+..+..+-+.+|.+.+++..|.++|+-++.|
T Consensus 69 rkglN~l~~-yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K 113 (149)
T KOG4077|consen 69 RKGLNNLFD-YDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK 113 (149)
T ss_pred HHHHHhhhc-cccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 334444444 556666666666677777777777777777766654
No 358
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=49.32 E-value=42 Score=23.76 Aligned_cols=30 Identities=10% Similarity=-0.089 Sum_probs=17.3
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHH
Q 042546 300 DESSYNAMASVLGREDCIDRFWKVLDEMRS 329 (671)
Q Consensus 300 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 329 (671)
|-.---.+|.+|.+.|++++|.++..++.+
T Consensus 22 D~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 22 DFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 333444556666677777777666666554
No 359
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=48.64 E-value=56 Score=24.42 Aligned_cols=46 Identities=11% Similarity=0.107 Sum_probs=21.3
Q ss_pred hcCCHHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHH
Q 042546 526 SKNRAIDACKFVHNCVREYDLKPWH-TTYEELIKNLLVQRGFKDALS 571 (671)
Q Consensus 526 ~~g~~~~A~~~~~~m~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~ 571 (671)
.....++|...+....++..-.|+. .+...|+.+|+.-|++.++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~ 64 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLA 64 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555554432211211 244555555555555555544
No 360
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=47.94 E-value=71 Score=26.58 Aligned_cols=41 Identities=12% Similarity=-0.017 Sum_probs=19.1
Q ss_pred HHHHHHHHhhhC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 042546 600 DAIAFLKGMTSK--RFPSMSVVLCLFAAFFQARRHSEAQDLLS 640 (671)
Q Consensus 600 ~A~~~~~~m~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 640 (671)
++..+|+.|..+ +..-+..|......+.+.|++++|.++++
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~ 123 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQ 123 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 444444444442 12334445555555555555555555554
No 361
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=46.65 E-value=1.5e+02 Score=23.81 Aligned_cols=27 Identities=11% Similarity=0.146 Sum_probs=19.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 042546 445 MKSKIAFRLSSAGKKDEANEFMDHMEA 471 (671)
Q Consensus 445 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 471 (671)
-|..|+..|...|..++|++++.+...
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 366777777777777777777777665
No 362
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=46.45 E-value=4.2e+02 Score=28.84 Aligned_cols=275 Identities=13% Similarity=0.073 Sum_probs=140.9
Q ss_pred hHHHHHHHHHHHHcCCCCCCHHHHHHH----HHH-HHccCChHHHHHHHHHHHH-------cCCCCCHHHHHHHHHHHHh
Q 042546 281 PKKALIFFRWAEESGFVKHDESSYNAM----ASV-LGREDCIDRFWKVLDEMRS-------KGYEMEMETCVKVLGRFSE 348 (671)
Q Consensus 281 ~~~A~~~f~~~~~~~~~~~~~~~~~~l----i~~-~~~~g~~~~A~~~~~~m~~-------~g~~p~~~t~~~li~~~~~ 348 (671)
...|.++|+...+. -+...-..+ ..+ ++...+.+.|..+|....+ .| +.....-+-.+|.+
T Consensus 228 ~~~a~~~~~~~a~~----g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~ 300 (552)
T KOG1550|consen 228 LSEAFKYYREAAKL----GHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQ 300 (552)
T ss_pred hhHHHHHHHHHHhh----cchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhc
Confidence 56788888877652 233332222 233 5566789999999988876 44 22344455555554
Q ss_pred CC-----ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 042546 349 RN-----MVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGR 423 (671)
Q Consensus 349 ~g-----~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 423 (671)
.. +.+.|+.+|...-+.|...... .+..+...|. +..+
T Consensus 301 g~~~~~~d~~~A~~~~~~aA~~g~~~a~~----------------------~lg~~~~~g~---------------~~~d 343 (552)
T KOG1550|consen 301 GLGVEKIDYEKALKLYTKAAELGNPDAQY----------------------LLGVLYETGT---------------KERD 343 (552)
T ss_pred CCCCccccHHHHHHHHHHHHhcCCchHHH----------------------HHHHHHHcCC---------------cccc
Confidence 32 4455666666655443222111 0111111111 2346
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH--hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 042546 424 MGECNKILKAMEEGGFIASSNMKSKIAFRLS--SAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCF 501 (671)
Q Consensus 424 ~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~--~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~ 501 (671)
...|.++|....+.|. ++..-+-+++.... -..+.+.|..++.+.-+.| .|-..--...+..+.. +..+.+.-.+
T Consensus 344 ~~~A~~yy~~Aa~~G~-~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~ 420 (552)
T KOG1550|consen 344 YRRAFEYYSLAAKAGH-ILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALY 420 (552)
T ss_pred HHHHHHHHHHHHHcCC-hHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHH
Confidence 6788888888887773 33322222222221 2346788888888888777 3332323333444444 7777777777
Q ss_pred HHHHHcCCCCCCHHHHHHHHHHH---Hh----cCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHH
Q 042546 502 QKMVEKEGTSHAGYAIDLLVNTY---CS----KNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLV----QRGFKDAL 570 (671)
Q Consensus 502 ~~m~~~~g~~p~~~~~~~li~~~---~~----~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~ 570 (671)
..+.+ .|.+--...-..++... .. ..+.+.+...+.....+ | +......|-+.|.. ..+.+.|.
T Consensus 421 ~~~a~-~g~~~~q~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~-g---~~~a~~~lgd~y~~g~g~~~d~~~a~ 495 (552)
T KOG1550|consen 421 LYLAE-LGYEVAQSNAAYLLDQSEEDLFSRGVISTLERAFSLYSRAAAQ-G---NADAILKLGDYYYYGLGTGRDPEKAA 495 (552)
T ss_pred HHHHH-hhhhHHhhHHHHHHHhccccccccccccchhHHHHHHHHHHhc-c---CHHHHhhhcceeeecCCCCCChHHHH
Confidence 66666 55432221111111111 11 12444555555555442 2 33333444444433 23466777
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHH------hcCChHHHHHHHHHhhhC
Q 042546 571 SLLCLMKDHGFPPFVDPFIKYVS------KSGTSDDAIAFLKGMTSK 611 (671)
Q Consensus 571 ~l~~~m~~~~~~p~~~t~~~~l~------~~g~~~~A~~~~~~m~~~ 611 (671)
..+......+ ....|..++. ... +..|.++++.....
T Consensus 496 ~~y~~a~~~~---~~~~~nlg~~~e~g~g~~~-~~~a~~~~~~~~~~ 538 (552)
T KOG1550|consen 496 AQYARASEQG---AQALFNLGYMHEHGEGIKV-LHLAKRYYDQASEE 538 (552)
T ss_pred HHHHHHHHhh---hHHHhhhhhHHhcCcCcch-hHHHHHHHHHHHhc
Confidence 7777666555 3334433332 233 67788877776653
No 363
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=46.33 E-value=64 Score=27.06 Aligned_cols=68 Identities=12% Similarity=0.167 Sum_probs=37.2
Q ss_pred ChHHHHHHHHHhhhCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHhchHhhhccHHHH----HHHHhhhcCCC
Q 042546 597 TSDDAIAFLKGMTSKRFP--SMSVVLCLFAAFFQARRHSEAQDLLSKCPRYVRNHADVL----NLLYSKKSGGD 664 (671)
Q Consensus 597 ~~~~A~~~~~~m~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~----~l~~~m~~~g~ 664 (671)
++.+++.+++.+.+...| +....--|.-++.|.|+++++.++.+...+.-++.+.+. .+-.+|.++|+
T Consensus 50 dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~Lk~~ied~itkegl 123 (149)
T KOG3364|consen 50 DVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALELKETIEDKITKEGL 123 (149)
T ss_pred HHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHhhcce
Confidence 345566677666652222 222222344466777777777777777665544544443 23445555554
No 364
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=46.20 E-value=3.6e+02 Score=28.00 Aligned_cols=383 Identities=10% Similarity=0.035 Sum_probs=190.7
Q ss_pred CCChHHHHHHHHHHhhc-CCCC------------CCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCC----CCCHHHHH
Q 042546 141 ESSPDEARRFFNWVLEK-ESER------------LSSKTYNLMLRIVGVHGLVQEFWGLVDVMKKKGY----GVASHVRN 203 (671)
Q Consensus 141 ~~~~~~A~~~f~~m~~~-~~~~------------~~~~~~n~li~~~~~~g~~~~a~~l~~~m~~~g~----~p~~~t~~ 203 (671)
.+..+.|.+.|....++ .+.+ +|-.-=+..++.+...|++.++..++++|...=+ .-+..+|+
T Consensus 92 ~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd 171 (549)
T PF07079_consen 92 QKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYD 171 (549)
T ss_pred hhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHH
Confidence 57888888888766552 1221 1222335567788899999999999988876533 36889999
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHcCCCCChHHHHHHHHHHHHhcCCChhHHHHHHhh--cccccChHHHHHHHHHhCCCh
Q 042546 204 KMTEKFEKEGLESDLEKLKGIFATGSIDNSIEKVASRICKVVRSDIWGDDVERQLRD--LNVTFSNDLVKFVVDKLGDEP 281 (671)
Q Consensus 204 ~ll~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 281 (671)
.++-.++++= ..++. +....+..+....++..+.+. ++..-.+ ..+.+.+.++.++....---+
T Consensus 172 ~~vlmlsrSY----fLEl~----e~~s~dl~pdyYemilfY~kk------i~~~d~~~Y~k~~peeeL~s~imqhlfi~p 237 (549)
T PF07079_consen 172 RAVLMLSRSY----FLELK----ESMSSDLYPDYYEMILFYLKK------IHAFDQRPYEKFIPEEELFSTIMQHLFIVP 237 (549)
T ss_pred HHHHHHhHHH----HHHHH----HhcccccChHHHHHHHHHHHH------HHHHhhchHHhhCcHHHHHHHHHHHHHhCC
Confidence 8887777652 12221 222223333334444433322 1111110 112244445555544431111
Q ss_pred -------HHHHHHHHHHHHcCCCCCCH-HHHHHHHHHHHccCChHHHHHHHHHHHHcCCCC----CHHHHHHHHHHHHhC
Q 042546 282 -------KKALIFFRWAEESGFVKHDE-SSYNAMASVLGREDCIDRFWKVLDEMRSKGYEM----EMETCVKVLGRFSER 349 (671)
Q Consensus 282 -------~~A~~~f~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p----~~~t~~~li~~~~~~ 349 (671)
-.+.+.++. .-+.|+- .....|+..+.+ +.+++..+-+.+....+++ =..+|..++....+.
T Consensus 238 ~e~l~~~mq~l~~We~----~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~ 311 (549)
T PF07079_consen 238 KERLPPLMQILENWEN----FYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQ 311 (549)
T ss_pred HhhccHHHHHHHHHHh----hccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 122333322 2234543 334455555555 5566666555554332221 356888899999999
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 042546 350 NMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNK 429 (671)
Q Consensus 350 g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 429 (671)
++..+|.+.+..+.. +.|+...-..++- ..+.+..+ +..|...++- ...=+.
T Consensus 312 ~~T~~a~q~l~lL~~--ldp~~svs~Klll------------s~~~lq~I----v~~DD~~~Tk----------lr~yL~ 363 (549)
T PF07079_consen 312 VQTEEAKQYLALLKI--LDPRISVSEKLLL------------SPKVLQDI----VCEDDESYTK----------LRDYLN 363 (549)
T ss_pred HhHHHHHHHHHHHHh--cCCcchhhhhhhc------------CHHHHHHH----HhcchHHHHH----------HHHHHH
Confidence 999999998887764 3455432222110 00111111 0111111111 111223
Q ss_pred HHHHHHHCCCCCCH-HHH-HHHHHHHHhcCC-HHHHHHHHHHHHHCCCCCCHHHHHHHH----HHHHhc---CCHHHHHH
Q 042546 430 ILKAMEEGGFIASS-NMK-SKIAFRLSSAGK-KDEANEFMDHMEASGSDVGDKMWVSLI----KGHCVA---GDLDKAAD 499 (671)
Q Consensus 430 ~~~~m~~~g~~~~~-~~~-~~li~~~~~~g~-~~~A~~~~~~m~~~g~~~~~~~~~~li----~~~~~~---g~~~~a~~ 499 (671)
++++....++..-. +.| ---..-+.+.|. -++|+++++...+-- .-|..+-|.+. .+|.+. ..+.+-..
T Consensus 364 lwe~~qs~DiDrqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft-~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlk 442 (549)
T PF07079_consen 364 LWEEIQSYDIDRQQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFT-NYDIECENIVFLFVKQAYKQALSMHAIPRLLK 442 (549)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 34443332221111 111 111222444444 677888887776532 22333333222 122221 23333344
Q ss_pred HHHHHHHcCCCCCC----HHHHHHHHHH--HHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 042546 500 CFQKMVEKEGTSHA----GYAIDLLVNT--YCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLL 573 (671)
Q Consensus 500 ~~~~m~~~~g~~p~----~~~~~~li~~--~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~ 573 (671)
+-+-+.+ .|+.|- ...-|.|-++ +...|++.++.-.-..+. .+.|.+.+|..+--++....++++|.+.+
T Consensus 443 Le~fi~e-~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~---~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l 518 (549)
T PF07079_consen 443 LEDFITE-VGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLT---KIAPSPQAYRLLGLCLMENKRYQEAWEYL 518 (549)
T ss_pred HHHHHHh-cCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH---HhCCcHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 4444445 676653 3344555544 334677777654444443 36777777777766666777777777777
Q ss_pred HHH
Q 042546 574 CLM 576 (671)
Q Consensus 574 ~~m 576 (671)
..+
T Consensus 519 ~~L 521 (549)
T PF07079_consen 519 QKL 521 (549)
T ss_pred HhC
Confidence 664
No 365
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=46.08 E-value=1.6e+02 Score=23.76 Aligned_cols=27 Identities=7% Similarity=0.245 Sum_probs=21.9
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHh
Q 042546 338 TCVKVLGRFSERNMVKEAVDLYEFAMA 364 (671)
Q Consensus 338 t~~~li~~~~~~g~~~~a~~l~~~m~~ 364 (671)
-|..++..|...|..++|++++.+...
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 477888888888888888888888765
No 366
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=45.72 E-value=2.9e+02 Score=26.68 Aligned_cols=58 Identities=3% Similarity=-0.102 Sum_probs=39.0
Q ss_pred HHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 042546 308 ASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMAC 365 (671)
Q Consensus 308 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~ 365 (671)
|.+++..+++.+++...-+--+.--+........-|-.|.+.+.+..+.++-..-...
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~ 147 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQD 147 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhC
Confidence 7888888888888776655443322223444555566688888888888887777654
No 367
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=45.62 E-value=55 Score=22.34 Aligned_cols=36 Identities=8% Similarity=0.029 Sum_probs=22.4
Q ss_pred HHHHHHHcCCHHHHHHHHHhchHhhhccHHHHHHHH
Q 042546 622 LFAAFFQARRHSEAQDLLSKCPRYVRNHADVLNLLY 657 (671)
Q Consensus 622 l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~l~~ 657 (671)
+.-++.+.|++++|.+..+.+.+.-++...+..|-.
T Consensus 7 lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~ 42 (53)
T PF14853_consen 7 LAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKE 42 (53)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHH
Confidence 445677788888888888777665555555554443
No 368
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=45.43 E-value=71 Score=23.90 Aligned_cols=47 Identities=9% Similarity=0.020 Sum_probs=28.1
Q ss_pred ccCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhCCChHHHHHHH
Q 042546 313 REDCIDRFWKVLDEMRSKGYEME--METCVKVLGRFSERNMVKEAVDLY 359 (671)
Q Consensus 313 ~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~li~~~~~~g~~~~a~~l~ 359 (671)
..++.++|+..+....++-..|. -.++..++.+|+..|++++++++-
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA 66 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFA 66 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666666655433222 345666777777777777666543
No 369
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=45.39 E-value=2.9e+02 Score=26.67 Aligned_cols=105 Identities=11% Similarity=0.129 Sum_probs=59.3
Q ss_pred cccChHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHH----cCCCCCHHH
Q 042546 263 VTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRS----KGYEMEMET 338 (671)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~~p~~~t 338 (671)
+.++...++.+++.-..++++--+-.+...+.+|-.--...|-.+..-|++.++.+.+.+..++..+ .|.+.|+..
T Consensus 77 ikfD~~~~n~l~kkneeki~Elde~i~~~eedngE~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l 156 (412)
T COG5187 77 IKFDRGRMNTLLKKNEEKIEELDERIREKEEDNGETEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFL 156 (412)
T ss_pred eehhhHHHHHHHHhhHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHH
Confidence 3456666666665522222222222333333334344467788888899999999988887766544 366666543
Q ss_pred HHH-HHHHHHhCCChHHHHHHHHHHHhCCC
Q 042546 339 CVK-VLGRFSERNMVKEAVDLYEFAMACKN 367 (671)
Q Consensus 339 ~~~-li~~~~~~g~~~~a~~l~~~m~~~g~ 367 (671)
.-+ |--.|....-+++.++..+.|.+.|.
T Consensus 157 ~kiRlg~~y~d~~vV~e~lE~~~~~iEkGg 186 (412)
T COG5187 157 CKIRLGLIYGDRKVVEESLEVADDIIEKGG 186 (412)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHHHHhCC
Confidence 332 22223344445666777777766554
No 370
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=45.17 E-value=44 Score=19.07 Aligned_cols=28 Identities=18% Similarity=0.049 Sum_probs=15.3
Q ss_pred CChHHHHHHHHHhhhCCCCCHHHHHHHH
Q 042546 596 GTSDDAIAFLKGMTSKRFPSMSVVLCLF 623 (671)
Q Consensus 596 g~~~~A~~~~~~m~~~~~p~~~~~~~l~ 623 (671)
|+.+.|..+|+++....+-+...|...+
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~ 28 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYA 28 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHH
Confidence 3455666666666655444555555444
No 371
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=44.91 E-value=1e+02 Score=27.90 Aligned_cols=33 Identities=3% Similarity=-0.080 Sum_probs=19.0
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 042546 509 GTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCV 541 (671)
Q Consensus 509 g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 541 (671)
...|+..+|..++.++...|+.++|.+...++.
T Consensus 139 ~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~ 171 (193)
T PF11846_consen 139 RRRPDPNVYQRYALALALLGDPEEARQWLARAR 171 (193)
T ss_pred HhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 345555555555555666666666655555554
No 372
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=44.69 E-value=2.7e+02 Score=26.09 Aligned_cols=18 Identities=11% Similarity=0.097 Sum_probs=11.4
Q ss_pred HhcCCHHHHHHHHHHHHH
Q 042546 525 CSKNRAIDACKFVHNCVR 542 (671)
Q Consensus 525 ~~~g~~~~A~~~~~~m~~ 542 (671)
+..+++.+|.++|+++..
T Consensus 165 a~leqY~~Ai~iyeqva~ 182 (288)
T KOG1586|consen 165 AQLEQYSKAIDIYEQVAR 182 (288)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345666677777776654
No 373
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=44.17 E-value=42 Score=32.47 Aligned_cols=49 Identities=14% Similarity=0.111 Sum_probs=39.8
Q ss_pred CCCCCHHH-HHHHHHHHHccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 042546 159 SERLSSKT-YNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRNKMTE 207 (671)
Q Consensus 159 ~~~~~~~~-~n~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~ 207 (671)
.+.||..+ ||..|..-.+.|++++|+.|++|..+.|+.--..||...++
T Consensus 251 ~v~~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~V~ 300 (303)
T PRK10564 251 PMLNDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISSVK 300 (303)
T ss_pred ccCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHHhh
Confidence 44566655 78999999999999999999999999998766666655443
No 374
>PRK09687 putative lyase; Provisional
Probab=44.14 E-value=3.1e+02 Score=26.65 Aligned_cols=170 Identities=10% Similarity=0.011 Sum_probs=71.3
Q ss_pred CCCHHHHHHHHHHHHccCCh-----HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHH
Q 042546 298 KHDESSYNAMASVLGREDCI-----DRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVN 372 (671)
Q Consensus 298 ~~~~~~~~~li~~~~~~g~~-----~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ 372 (671)
.+|...-...+.+++..+.. ..+...+..... .++..+-...+.++++.++ +++...+-.+.+ .+|..
T Consensus 102 D~d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~---D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~---d~~~~ 174 (280)
T PRK09687 102 DKSACVRASAINATGHRCKKNPLYSPKIVEQSQITAF---DKSTNVRFAVAFALSVIND-EAAIPLLINLLK---DPNGD 174 (280)
T ss_pred CCCHHHHHHHHHHHhcccccccccchHHHHHHHHHhh---CCCHHHHHHHHHHHhccCC-HHHHHHHHHHhc---CCCHH
Confidence 45555555555555554321 222333333222 2355555566666666665 345555555553 23333
Q ss_pred HHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 042546 373 CCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFR 452 (671)
Q Consensus 373 ~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~ 452 (671)
.-...+.++.+.+..+......+...+ ..++..+-...+.++.+.|+ ..|...+-...+.+ + ..-..+.+
T Consensus 175 VR~~A~~aLg~~~~~~~~~~~~L~~~L----~D~~~~VR~~A~~aLg~~~~-~~av~~Li~~L~~~---~--~~~~a~~A 244 (280)
T PRK09687 175 VRNWAAFALNSNKYDNPDIREAFVAML----QDKNEEIRIEAIIGLALRKD-KRVLSVLIKELKKG---T--VGDLIIEA 244 (280)
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHh----cCCChHHHHHHHHHHHccCC-hhHHHHHHHHHcCC---c--hHHHHHHH
Confidence 434444444333211111111111111 22344444455555555555 23333333333321 1 12234455
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 042546 453 LSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKG 487 (671)
Q Consensus 453 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~ 487 (671)
+...|.. +|...+..+.+. .||...-...+.+
T Consensus 245 Lg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a 276 (280)
T PRK09687 245 AGELGDK-TLLPVLDTLLYK--FDDNEIITKAIDK 276 (280)
T ss_pred HHhcCCH-hHHHHHHHHHhh--CCChhHHHHHHHH
Confidence 5555553 355555554432 2344444433333
No 375
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=43.08 E-value=3.5e+02 Score=26.98 Aligned_cols=65 Identities=11% Similarity=0.148 Sum_probs=37.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 042546 477 GDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSH---AGYAIDLLVNTYCSKNRAIDACKFVHNCVR 542 (671)
Q Consensus 477 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 542 (671)
...+|..+...+.+.|.++.|...+..+.+ .+..+ +....-.-....-..|+.++|...++....
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~-~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQ-LNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhc-cCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345667777777777777777777777655 32111 122233334444556777777777666654
No 376
>PLN03025 replication factor C subunit; Provisional
Probab=42.18 E-value=3.6e+02 Score=26.79 Aligned_cols=81 Identities=9% Similarity=0.043 Sum_probs=46.5
Q ss_pred HHHHHhhcccccChHHHHHHHHHhCCChHHHHHHHHHHHHcCC-----------CCCCHHHHHHHHHHHHccCChHHHHH
Q 042546 254 VERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGF-----------VKHDESSYNAMASVLGREDCIDRFWK 322 (671)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~f~~~~~~~~-----------~~~~~~~~~~li~~~~~~g~~~~A~~ 322 (671)
+.....+.|+.+++..+..++...+|++..|...++......+ -.+....-..+++.. ..+++++|..
T Consensus 167 L~~i~~~egi~i~~~~l~~i~~~~~gDlR~aln~Lq~~~~~~~~i~~~~v~~~~~~~~~~~i~~~i~~~-~~~~~~~a~~ 245 (319)
T PLN03025 167 LMKVVEAEKVPYVPEGLEAIIFTADGDMRQALNNLQATHSGFGFVNQENVFKVCDQPHPLHVKNIVRNC-LKGKFDDACD 245 (319)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHcCCCCHHHHHHHHHHH-HcCCHHHHHH
Confidence 3444556688888888888888888999998888874432110 011112222233332 2355666666
Q ss_pred HHHHHHHcCCCCC
Q 042546 323 VLDEMRSKGYEME 335 (671)
Q Consensus 323 ~~~~m~~~g~~p~ 335 (671)
.+.+|...|..|.
T Consensus 246 ~l~~ll~~g~~~~ 258 (319)
T PLN03025 246 GLKQLYDLGYSPT 258 (319)
T ss_pred HHHHHHHcCCCHH
Confidence 6666665555543
No 377
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=42.15 E-value=5.2e+02 Score=28.61 Aligned_cols=224 Identities=10% Similarity=0.026 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHC------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 042546 426 ECNKILKAMEEG------GFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAAD 499 (671)
Q Consensus 426 ~A~~~~~~m~~~------g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~ 499 (671)
.+.++.+++.+. .+.++....-..+--..+.=+.++-.++++++...- .....+..++++....|-.+...-
T Consensus 322 ~~~~l~~~l~~~~~~~~~~~~~~~~~~f~~Lv~~lr~l~~~~L~~l~~~~~~~~--~~~~~r~~~lDal~~aGT~~av~~ 399 (618)
T PF01347_consen 322 NLKELLKELADLLEEPEDPVSKETLSKFSRLVRLLRTLSYEDLEELYKQLKSKS--KKEQARKIFLDALPQAGTNPAVKF 399 (618)
T ss_dssp ---HHHHHHHHHHHH-SSS--TTHHHHHHHHHHHHTTS-HHHHHHHHHHHTTS-----HHHHHHHHHHHHHH-SHHHHHH
T ss_pred HHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhc--cHHHHHHHHHHHHHHcCCHHHHHH
Q ss_pred HHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHH-------HHHHHHHHHHhcC--------
Q 042546 500 CFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHT-------TYEELIKNLLVQR-------- 564 (671)
Q Consensus 500 ~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~-------~~~~li~~~~~~g-------- 564 (671)
+.+.+.. ..+.+.......+.-......--.+..+.+..|.+......+.. ++.+|+.-++...
T Consensus 400 i~~~I~~-~~~~~~ea~~~l~~l~~~~~~Pt~e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~ 478 (618)
T PF01347_consen 400 IKDLIKS-KKLTDDEAAQLLASLPFHVRRPTEELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAEFCDP 478 (618)
T ss_dssp HHHHHHT-T-S-HHHHHHHHHHHHHT-----HHHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT---------
T ss_pred HHHHHHc-CCCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecccccccccc
Q ss_pred --------CHHHHHHHHHHHHhCCCCCCHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHHH--HcCCHHH
Q 042546 565 --------GFKDALSLLCLMKDHGFPPFVDPFIKYVSKSGTSDDAIAFLKGMTSKRFPSMSVVLCLFAAFF--QARRHSE 634 (671)
Q Consensus 565 --------~~~~A~~l~~~m~~~~~~p~~~t~~~~l~~~g~~~~A~~~~~~m~~~~~p~~~~~~~l~~~~~--~~g~~~~ 634 (671)
-.+.-...+......+-......++.+++..|..+.+..+..-+......+...-...+.++. ..-..++
T Consensus 479 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~~~ 558 (618)
T PF01347_consen 479 CSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGHPESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHCPEK 558 (618)
T ss_dssp --SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-HHH
T ss_pred cchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCCchhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcCcHH
Q ss_pred HHHHHHhchHhhhccHHH
Q 042546 635 AQDLLSKCPRYVRNHADV 652 (671)
Q Consensus 635 A~~~~~~m~~~~~~~~~~ 652 (671)
+.+++-.+-.+.+...++
T Consensus 559 v~~~l~~I~~n~~e~~Ev 576 (618)
T PF01347_consen 559 VREILLPIFMNTTEDPEV 576 (618)
T ss_dssp HHHHHHHHHH-TTS-HHH
T ss_pred HHHHHHHHhcCCCCChhH
No 378
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=41.26 E-value=3.3e+02 Score=27.70 Aligned_cols=40 Identities=15% Similarity=0.250 Sum_probs=30.7
Q ss_pred HHHHHHhhcccccChHHHHHHHHHhCCChHHHHHHHHHHH
Q 042546 253 DVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAE 292 (671)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~f~~~~ 292 (671)
.+.....+.|+.+++..+..++...+|++..+...++.+.
T Consensus 175 ~l~~~~~~~g~~i~~~al~~l~~~~~gdlr~~~~~lekl~ 214 (367)
T PRK14970 175 HLAGIAVKEGIKFEDDALHIIAQKADGALRDALSIFDRVV 214 (367)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 3445555678888888888888887888988888888765
No 379
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=41.14 E-value=2.8e+02 Score=25.28 Aligned_cols=75 Identities=9% Similarity=0.005 Sum_probs=43.1
Q ss_pred ChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHc---CCCCCHHHHHHHHHHHHhCCChHHHH
Q 042546 280 EPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSK---GYEMEMETCVKVLGRFSERNMVKEAV 356 (671)
Q Consensus 280 ~~~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~~~t~~~li~~~~~~g~~~~a~ 356 (671)
.-+.|++.|-.+.... .-+....-.-+..|-...+.+++..++....+. +-.+|+..+.+|.+.+-+.|+++.|.
T Consensus 121 ~d~~A~~~fL~~E~~~--~l~t~elq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 121 GDQEALRRFLQLEGTP--ELETAELQYALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred CcHHHHHHHHHHcCCC--CCCCHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 4456777776666432 222233333333444456677777777666543 23566777777777777777776653
No 380
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=40.40 E-value=87 Score=22.48 Aligned_cols=51 Identities=12% Similarity=0.118 Sum_probs=42.7
Q ss_pred CCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 042546 161 RLSSKTYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRNKMTEKFEKE 212 (671)
Q Consensus 161 ~~~~~~~n~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~ 212 (671)
.|+...+|.++...++..-.++++..+.+..+.|. .+..+|.--++.+++.
T Consensus 5 ~~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~LaRe 55 (65)
T PF09454_consen 5 VAEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLARE 55 (65)
T ss_dssp E-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHH
Confidence 37778899999999999999999999999999985 5778888777777765
No 381
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=39.81 E-value=1.7e+02 Score=24.30 Aligned_cols=42 Identities=14% Similarity=0.052 Sum_probs=26.5
Q ss_pred HHHHHHHHHhhhCCC--CCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 042546 599 DDAIAFLKGMTSKRF--PSMSVVLCLFAAFFQARRHSEAQDLLS 640 (671)
Q Consensus 599 ~~A~~~~~~m~~~~~--p~~~~~~~l~~~~~~~g~~~~A~~~~~ 640 (671)
++...+|..|.+++. .-+..|......+-..|++.+|.++|+
T Consensus 80 ~dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 80 DEPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 345566666666433 344556666677777777777777765
No 382
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=39.09 E-value=3e+02 Score=24.92 Aligned_cols=61 Identities=18% Similarity=0.139 Sum_probs=30.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHH-HHHhcCC--HHHHHHHHHHHHH
Q 042546 411 LNSVLKALISVGRMGECNKILKAMEEG--GFIASSNMKSKIAF-RLSSAGK--KDEANEFMDHMEA 471 (671)
Q Consensus 411 ~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~~~~~~~~~li~-~~~~~g~--~~~A~~~~~~m~~ 471 (671)
++...-.....|++++|.+-++++.+. .++.-...|..+.. +++.++. +-+|.-++.....
T Consensus 32 ~s~~aI~~~H~~~~eeA~~~l~~a~~~v~~Lk~~l~~~pel~~ag~~~~a~QEyvEA~~l~~~l~~ 97 (204)
T COG2178 32 LSGEAIFLLHRGDFEEAEKKLKKASEAVEKLKRLLAGFPELYFAGFVTTALQEYVEATLLYSILKD 97 (204)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcchHHHHHHHHHHHHHHhc
Confidence 334444455667777777777666531 11122233444444 5555554 3455555554443
No 383
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=39.07 E-value=2.9e+02 Score=24.74 Aligned_cols=78 Identities=10% Similarity=0.049 Sum_probs=40.4
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHHc-----CCCCC-HHHHHHHHHHHHhCC----Ch-------HHHHHHHHHHHhCC
Q 042546 304 YNAMASVLGREDCIDRFWKVLDEMRSK-----GYEME-METCVKVLGRFSERN----MV-------KEAVDLYEFAMACK 366 (671)
Q Consensus 304 ~~~li~~~~~~g~~~~A~~~~~~m~~~-----g~~p~-~~t~~~li~~~~~~g----~~-------~~a~~l~~~m~~~g 366 (671)
|...+.-+++.....++.+++++...+ .+.|+ ..++..+-.+|...+ +. ++|.+.|+....
T Consensus 31 WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~-- 108 (186)
T PF06552_consen 31 WGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVD-- 108 (186)
T ss_dssp HHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHh--
Confidence 555555566666555555555554332 34676 356666655555432 33 444444444443
Q ss_pred CCCCHHHHHHHHHHHHh
Q 042546 367 NKPSVNCCTFLLRKIVV 383 (671)
Q Consensus 367 ~~p~~~~~~~ll~~~~~ 383 (671)
..|+..+|+.-+....+
T Consensus 109 ~~P~ne~Y~ksLe~~~k 125 (186)
T PF06552_consen 109 EDPNNELYRKSLEMAAK 125 (186)
T ss_dssp H-TT-HHHHHHHHHHHT
T ss_pred cCCCcHHHHHHHHHHHh
Confidence 47888888877777654
No 384
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=38.86 E-value=50 Score=18.06 Aligned_cols=27 Identities=19% Similarity=0.178 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhch
Q 042546 617 SVVLCLFAAFFQARRHSEAQDLLSKCP 643 (671)
Q Consensus 617 ~~~~~l~~~~~~~g~~~~A~~~~~~m~ 643 (671)
..|..+...+...|++++|...+++..
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~ 28 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKAL 28 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 356778888999999999999887654
No 385
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=38.21 E-value=1.8e+02 Score=28.27 Aligned_cols=57 Identities=9% Similarity=0.063 Sum_probs=36.2
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 042546 498 ADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLL 561 (671)
Q Consensus 498 ~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~ 561 (671)
.++++.+.+ .++.|.-..+..+.-.+.+.=.+.+...+++.+.. |..-|..|+..||
T Consensus 263 ~EL~~~L~~-~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~s------D~~rfd~Ll~iCc 319 (370)
T KOG4567|consen 263 EELWRHLEE-KEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLS------DPQRFDFLLYICC 319 (370)
T ss_pred HHHHHHHHh-cCCCccchhHHHHHHHHhccCCchhHHHHHHHHhc------ChhhhHHHHHHHH
Confidence 456666666 67777777777766666777777777777777654 2222555555544
No 386
>PRK10941 hypothetical protein; Provisional
Probab=37.67 E-value=3.4e+02 Score=26.21 Aligned_cols=55 Identities=15% Similarity=0.025 Sum_probs=27.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH----HHHHHhcCChHHHHHHHHHhhh
Q 042546 554 EELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPF----IKYVSKSGTSDDAIAFLKGMTS 610 (671)
Q Consensus 554 ~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~t~----~~~l~~~g~~~~A~~~~~~m~~ 610 (671)
+.+-.+|.+.++++.|+...+.+.. +.|+...- .-.|.+.|....|..=++...+
T Consensus 185 ~nLK~~~~~~~~~~~AL~~~e~ll~--l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~ 243 (269)
T PRK10941 185 DTLKAALMEEKQMELALRASEALLQ--FDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVE 243 (269)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 3444455556666666666665554 34443221 2233455555555555555444
No 387
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=37.62 E-value=7.6e+02 Score=29.25 Aligned_cols=119 Identities=10% Similarity=0.072 Sum_probs=74.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH----
Q 042546 515 YAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPW----HTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVD---- 586 (671)
Q Consensus 515 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~---- 586 (671)
.-|-.+++.+-+.+..+.+.++-....+. ..++ ..+++++.+.....|.+-+|.+.+-. .||..
T Consensus 984 hYYlkv~rlle~hn~~E~vcQlA~~AIe~--l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~------npdserrrd 1055 (1480)
T KOG4521|consen 984 HYYLKVVRLLEEHNHAEEVCQLAVKAIEN--LPDDNPSVALISTTVFNHHLDLGHWFQAYKAILR------NPDSERRRD 1055 (1480)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHc------CCcHHHHHH
Confidence 34677888888888888888887766653 3333 23667777777788888887765432 35543
Q ss_pred ---HHHHHHHhcCChHH------------HHH-HHHHhhhCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHh
Q 042546 587 ---PFIKYVSKSGTSDD------------AIA-FLKGMTSKRF-PSMSVVLCLFAAFFQARRHSEAQDLLSK 641 (671)
Q Consensus 587 ---t~~~~l~~~g~~~~------------A~~-~~~~m~~~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 641 (671)
.++..++.+|.++. ... +++...+..+ .....|..|---+...+++.+|-.+.-+
T Consensus 1056 cLRqlvivLfecg~l~~L~~fpfigl~~eve~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~RkaatvMYE 1127 (1480)
T KOG4521|consen 1056 CLRQLVIVLFECGELEALATFPFIGLEQEVEDFLRESAARSSPSMKKNYYELLYAFHVARHNFRKAATVMYE 1127 (1480)
T ss_pred HHHHHHHHHHhccchHHHhhCCccchHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhcchhHHHHHHHH
Confidence 24666777777543 333 3333333333 2334566666666778899888776655
No 388
>PHA02875 ankyrin repeat protein; Provisional
Probab=37.60 E-value=2.2e+02 Score=29.50 Aligned_cols=189 Identities=12% Similarity=0.035 Sum_probs=95.8
Q ss_pred HHHHHHHHcCCCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHH
Q 042546 394 KVVRVFRENGNVLTDAM--LNSVLKALISVGRMGECNKILKAMEEGGFIASSN--MKSKIAFRLSSAGKKDEANEFMDHM 469 (671)
Q Consensus 394 ~~~~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~m 469 (671)
++++.+.+.|..++... ..+.+...+..|+.+ +.+.+.+.|..|+.. .....+...+..|+.+.+..+++
T Consensus 16 ~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~----~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~-- 89 (413)
T PHA02875 16 DIARRLLDIGINPNFEIYDGISPIKLAMKFRDSE----AIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELLD-- 89 (413)
T ss_pred HHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHH----HHHHHHhCCCCccccCCCcccHHHHHHHCCCHHHHHHHHH--
Confidence 45566666787776542 344556666778865 344445566555432 12234556667888877655554
Q ss_pred HHCCCCCCHH---HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 042546 470 EASGSDVGDK---MWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYA--IDLLVNTYCSKNRAIDACKFVHNCVREY 544 (671)
Q Consensus 470 ~~~g~~~~~~---~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~~~ 544 (671)
.|...+.. .-.+.+...+..|+.+- ++.+.+ .|..|+... -.+.+...+..|+.+-+..+++.
T Consensus 90 --~~~~~~~~~~~~g~tpL~~A~~~~~~~i----v~~Ll~-~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~----- 157 (413)
T PHA02875 90 --LGKFADDVFYKDGMTPLHLATILKKLDI----MKLLIA-RGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDH----- 157 (413)
T ss_pred --cCCcccccccCCCCCHHHHHHHhCCHHH----HHHHHh-CCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhc-----
Confidence 33222211 11234444556677654 444445 566654322 12234444567887765555532
Q ss_pred CCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH------HHHHHHHHhcCChHHHHHHH
Q 042546 545 DLKPW---HTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFV------DPFIKYVSKSGTSDDAIAFL 605 (671)
Q Consensus 545 ~~~p~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~------~t~~~~l~~~g~~~~A~~~~ 605 (671)
|..++ ..-++.|. ..+..|+.+ +.+.+.+.|..|+. .+.+..-+..|+.+-+.-++
T Consensus 158 g~~~~~~d~~g~TpL~-~A~~~g~~e----iv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~iv~~Ll 222 (413)
T PHA02875 158 KACLDIEDCCGCTPLI-IAMAKGDIA----ICKMLLDSGANIDYFGKNGCVAALCYAIENNKIDIVRLFI 222 (413)
T ss_pred CCCCCCCCCCCCCHHH-HHHHcCCHH----HHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHHHHHHHH
Confidence 33222 22223333 334456654 44555666766654 23344335666665444443
No 389
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=37.58 E-value=6.7e+02 Score=28.61 Aligned_cols=222 Identities=13% Similarity=0.069 Sum_probs=120.7
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHH-HhcCCHHHHHHHHHHHHHC----CCCCCHHHHHHHHH
Q 042546 419 ISVGRMGECNKILKAMEEGGFIASS-------NMKSKIAFRL-SSAGKKDEANEFMDHMEAS----GSDVGDKMWVSLIK 486 (671)
Q Consensus 419 ~~~g~~~~A~~~~~~m~~~g~~~~~-------~~~~~li~~~-~~~g~~~~A~~~~~~m~~~----g~~~~~~~~~~li~ 486 (671)
....++++|..+..+....-..|+. ..|+++-... ...|++++|.++-+..... -..+..+.+..+..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 4578899999998887653222222 2344433222 3478889999888776542 23445677777888
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHH---HHHH--HHHhcCC--HHHHHHHHHHHHHhCC-----CCCCHHHHH
Q 042546 487 GHCVAGDLDKAADCFQKMVEKEGTSHAGYAID---LLVN--TYCSKNR--AIDACKFVHNCVREYD-----LKPWHTTYE 554 (671)
Q Consensus 487 ~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~---~li~--~~~~~g~--~~~A~~~~~~m~~~~~-----~~p~~~~~~ 554 (671)
+..-.|++++|..+.....+ ..-.-+...+. .+.. .+-..|. ..+....|.....+.. -.+-..++.
T Consensus 506 a~~~~G~~~~Al~~~~~a~~-~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~ 584 (894)
T COG2909 506 AAHIRGELTQALALMQQAEQ-MARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRA 584 (894)
T ss_pred HHHHhchHHHHHHHHHHHHH-HHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHH
Confidence 88889999999988877766 33333443333 2222 2445663 3344444544433211 112233555
Q ss_pred HHHHHHHh-cCCHHHHHHHHHHHHhCCCCCCHHHH-----HHHHHhcCChHHHHHHHHHhhhCCC-----CCHHHHHHHH
Q 042546 555 ELIKNLLV-QRGFKDALSLLCLMKDHGFPPFVDPF-----IKYVSKSGTSDDAIAFLKGMTSKRF-----PSMSVVLCLF 623 (671)
Q Consensus 555 ~li~~~~~-~g~~~~A~~l~~~m~~~~~~p~~~t~-----~~~l~~~g~~~~A~~~~~~m~~~~~-----p~~~~~~~l~ 623 (671)
.+..++.+ .+...++..-++--......|-...+ .......|+.++|...+.++..... ++...-...+
T Consensus 585 ~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v 664 (894)
T COG2909 585 QLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKV 664 (894)
T ss_pred HHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHh
Confidence 55555555 12222222222222222222222211 2333468999999999998877311 2322222333
Q ss_pred HH--HHHcCCHHHHHHHHHh
Q 042546 624 AA--FFQARRHSEAQDLLSK 641 (671)
Q Consensus 624 ~~--~~~~g~~~~A~~~~~~ 641 (671)
.. -...|+.++|.....+
T Consensus 665 ~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 665 KLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred hHHHhcccCCHHHHHHHHHh
Confidence 32 2447888888877766
No 390
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=37.51 E-value=3.8e+02 Score=25.72 Aligned_cols=26 Identities=12% Similarity=0.120 Sum_probs=15.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 042546 407 TDAMLNSVLKALISVGRMGECNKILK 432 (671)
Q Consensus 407 ~~~~~~~li~~~~~~g~~~~A~~~~~ 432 (671)
|+.....+...|.+.|++.+|+.-|-
T Consensus 89 dp~LH~~~a~~~~~e~~~~~A~~Hfl 114 (260)
T PF04190_consen 89 DPELHHLLAEKLWKEGNYYEAERHFL 114 (260)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 44556666677777777777766553
No 391
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=37.38 E-value=3e+02 Score=29.50 Aligned_cols=98 Identities=10% Similarity=0.133 Sum_probs=57.8
Q ss_pred HHHHHhhcccccChHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCC
Q 042546 254 VERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYE 333 (671)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 333 (671)
+...+.+.++.+++..+..+.....|++..|...++++....+-. .+.+ -.+..++|.. .
T Consensus 196 L~~i~~~egi~ie~eAL~~Ia~~s~GslR~al~~Ldkai~~~~~~---------------~~~I--t~~~V~~llg--~- 255 (507)
T PRK06645 196 LEYITKQENLKTDIEALRIIAYKSEGSARDAVSILDQAASMSAKS---------------DNII--SPQVINQMLG--L- 255 (507)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccC---------------CCCc--CHHHHHHHHC--C-
Confidence 344455667777888777777777788888888888764311100 0111 1112222321 1
Q ss_pred CCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHH
Q 042546 334 MEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVN 372 (671)
Q Consensus 334 p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ 372 (671)
++....-.++.+.. .|+.++|+.+++++...|..|...
T Consensus 256 ~~~~~if~L~~ai~-~~d~~~Al~~l~~L~~~g~~~~~~ 293 (507)
T PRK06645 256 VDSSVIIEFVEYII-HRETEKAINLINKLYGSSVNLEIF 293 (507)
T ss_pred CCHHHHHHHHHHHH-cCCHHHHHHHHHHHHHcCCCHHHH
Confidence 23444445555444 478888888888888888877643
No 392
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=37.36 E-value=2.9e+02 Score=30.81 Aligned_cols=40 Identities=10% Similarity=0.153 Sum_probs=31.7
Q ss_pred HHHHHhhcccccChHHHHHHHHHhCCChHHHHHHHHHHHH
Q 042546 254 VERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEE 293 (671)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~f~~~~~ 293 (671)
+...+.+.|+.+++..+..+.+...|++..|+.+++++..
T Consensus 187 L~~Il~kEgi~id~eAL~~Ia~~A~GslRdAlnLLDqaia 226 (709)
T PRK08691 187 LAHVLDSEKIAYEPPALQLLGRAAAGSMRDALSLLDQAIA 226 (709)
T ss_pred HHHHHHHcCCCcCHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 4445566788888888888888888999999999987653
No 393
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=36.75 E-value=2.6e+02 Score=30.42 Aligned_cols=75 Identities=15% Similarity=0.154 Sum_probs=50.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCCHH------HHHHHHHHHHHCCCCCCHHHHHHH
Q 042546 413 SVLKALISVGRMGECNKILKAMEEG--GFIASSNMKSKIAFRLSSAGKKD------EANEFMDHMEASGSDVGDKMWVSL 484 (671)
Q Consensus 413 ~li~~~~~~g~~~~A~~~~~~m~~~--g~~~~~~~~~~li~~~~~~g~~~------~A~~~~~~m~~~g~~~~~~~~~~l 484 (671)
+|..+|...|++..+.++++..... |-+.-...||..|..+.+.|.++ .|.++++... +.-|..||..|
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHH
Confidence 7888888888888888888887643 33334567788888888888653 4444444443 45577777777
Q ss_pred HHHHHh
Q 042546 485 IKGHCV 490 (671)
Q Consensus 485 i~~~~~ 490 (671)
+.+-..
T Consensus 110 ~~~sln 115 (1117)
T COG5108 110 CQASLN 115 (1117)
T ss_pred HHhhcC
Confidence 665443
No 394
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=36.68 E-value=4.4e+02 Score=28.33 Aligned_cols=95 Identities=13% Similarity=0.063 Sum_probs=57.1
Q ss_pred HHHHhhcccccChHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCC
Q 042546 255 ERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEM 334 (671)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 334 (671)
...+.+.|+.+++..+..+.....|++..|..++++.... | .|.+.. +-..+|. |. +
T Consensus 188 ~~il~~egi~~~~~al~~ia~~s~GslR~al~lLdq~ia~-~-----------------~~~It~--~~V~~~l--g~-~ 244 (509)
T PRK14958 188 QHLLKEENVEFENAALDLLARAANGSVRDALSLLDQSIAY-G-----------------NGKVLI--ADVKTML--GT-I 244 (509)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHHhc-C-----------------CCCcCH--HHHHHHH--CC-C
Confidence 3445566777888888877777778888888888765421 1 111111 1112222 22 3
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHH
Q 042546 335 EMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNC 373 (671)
Q Consensus 335 ~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~ 373 (671)
+......++.+... ++.+.+++++++|...|..|....
T Consensus 245 ~~~~i~~ll~al~~-~d~~~~l~~~~~l~~~g~~~~~il 282 (509)
T PRK14958 245 EPLLLFDILEALAA-KAGDRLLGCVTRLVEQGVDFSNAL 282 (509)
T ss_pred CHHHHHHHHHHHHc-CCHHHHHHHHHHHHHcCCCHHHHH
Confidence 44445555665543 778888888888888887776443
No 395
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=36.48 E-value=2e+02 Score=31.52 Aligned_cols=91 Identities=12% Similarity=0.094 Sum_probs=36.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 042546 411 LNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCV 490 (671)
Q Consensus 411 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~ 490 (671)
|..-+.-+..+++.. ....+.+..+-...+...-.-++..|.+.|..+.|.++.+.+-.+- ....-|..-+..+.+
T Consensus 375 W~vai~yL~~c~~~g--~~~i~~lL~~~p~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~--~~~~~~g~AL~~~~r 450 (566)
T PF07575_consen 375 WQVAIGYLSSCPDEG--RERIEELLPRVPLDTNDDAEKLLEICAELGLEDVAREICKILGQRL--LKEGRYGEALSWFIR 450 (566)
T ss_dssp HHHHHHHHHS-SSS---HHHHHHHGGG----SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHH--HHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHCChhh--HHHHHHHHhhCCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH--HHCCCHHHHHHHHHH
Confidence 444444444444322 3334444332223445556667777777777777777777654331 112334455555555
Q ss_pred cCCHHHHHHHHHHHH
Q 042546 491 AGDLDKAADCFQKMV 505 (671)
Q Consensus 491 ~g~~~~a~~~~~~m~ 505 (671)
+|+.+.+..+-+.+.
T Consensus 451 a~d~~~v~~i~~~ll 465 (566)
T PF07575_consen 451 AGDYSLVTRIADRLL 465 (566)
T ss_dssp ---------------
T ss_pred CCCHHHHHHHHHHHH
Confidence 555555444444443
No 396
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=36.38 E-value=5.5e+02 Score=27.23 Aligned_cols=177 Identities=12% Similarity=0.067 Sum_probs=101.4
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHH
Q 042546 440 IASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDL 519 (671)
Q Consensus 440 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~ 519 (671)
..|....-+++..+..+....-.+.+..+|...| -+...|-.++..|..+ .-++-..+|+++.+ ..+. |.+.-..
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve-~dfn-Dvv~~Re 137 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVE-YDFN-DVVIGRE 137 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHH-hcch-hHHHHHH
Confidence 3455556677777777777777777777777664 3566777777777777 55666777777766 3332 3344444
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCCCCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHHHHH---
Q 042546 520 LVNTYCSKNRAIDACKFVHNCVREYDLKPW------HTTYEELIKNLLVQRGFKDALSLLCLMKDH-GFPPFVDPFI--- 589 (671)
Q Consensus 520 li~~~~~~g~~~~A~~~~~~m~~~~~~~p~------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-~~~p~~~t~~--- 589 (671)
|..-|-+ ++.+.+..+|.....+ +-|. ...|.-|+..- ..+.+..+.+..++... |..--...+-
T Consensus 138 La~~yEk-ik~sk~a~~f~Ka~yr--fI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~ 212 (711)
T COG1747 138 LADKYEK-IKKSKAAEFFGKALYR--FIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVY 212 (711)
T ss_pred HHHHHHH-hchhhHHHHHHHHHHH--hcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHH
Confidence 5555544 7777777777766543 2231 12444444311 34556666666655532 2111122222
Q ss_pred HHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHH
Q 042546 590 KYVSKSGTSDDAIAFLKGMTSKRFPSMSVVLCLFAAF 626 (671)
Q Consensus 590 ~~l~~~g~~~~A~~~~~~m~~~~~p~~~~~~~l~~~~ 626 (671)
.-|....++++|++++..+.+.+..|...-..++.-+
T Consensus 213 ~~Ys~~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~l 249 (711)
T COG1747 213 KKYSENENWTEAIRILKHILEHDEKDVWARKEIIENL 249 (711)
T ss_pred HHhccccCHHHHHHHHHHHhhhcchhhhHHHHHHHHH
Confidence 3345667777787777777765544544444444443
No 397
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=36.36 E-value=4.1e+02 Score=25.72 Aligned_cols=53 Identities=11% Similarity=0.090 Sum_probs=37.7
Q ss_pred HHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHH-------HHHHHHHhCCChHHHHHHH
Q 042546 307 MASVLGREDCIDRFWKVLDEMRSKGYEMEMETCV-------KVLGRFSERNMVKEAVDLY 359 (671)
Q Consensus 307 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~-------~li~~~~~~g~~~~a~~l~ 359 (671)
+..-..+.+++++|...+.+....|+..|..+.| .+...|...|+...-.++.
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i 68 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTI 68 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHH
Confidence 4455677888999999999999999888887665 3555566666655544444
No 398
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=36.19 E-value=2.3e+02 Score=22.80 Aligned_cols=7 Identities=14% Similarity=0.586 Sum_probs=2.2
Q ss_pred cCCHHHH
Q 042546 563 QRGFKDA 569 (671)
Q Consensus 563 ~g~~~~A 569 (671)
.|++++|
T Consensus 53 rG~Yq~A 59 (116)
T PF09477_consen 53 RGDYQEA 59 (116)
T ss_dssp TT-HHHH
T ss_pred hHHHHHH
Confidence 3333333
No 399
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=36.11 E-value=3.4e+02 Score=24.75 Aligned_cols=29 Identities=10% Similarity=0.025 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 042546 444 NMKSKIAFRLSSAGKKDEANEFMDHMEAS 472 (671)
Q Consensus 444 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 472 (671)
...+.++..+...|+++.|.+.|.-+...
T Consensus 42 ~~L~~lLh~~llr~d~~rA~Raf~lLiR~ 70 (199)
T PF04090_consen 42 RVLTDLLHLCLLRGDWDRAYRAFGLLIRC 70 (199)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHcC
Confidence 45567777777788888888888777654
No 400
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=36.02 E-value=4.4e+02 Score=26.01 Aligned_cols=109 Identities=11% Similarity=0.120 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHHCCC----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 042546 424 MGECNKILKAMEEGGF----IASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAAD 499 (671)
Q Consensus 424 ~~~A~~~~~~m~~~g~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~ 499 (671)
.++|.+.|+.....+. ..+...-..++....+.|..+.-..+++.... .++...-..++.+.+...+.+...+
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~---~~~~~~k~~~l~aLa~~~d~~~~~~ 222 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKN---STSPEEKRRLLSALACSPDPELLKR 222 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHT---TSTHHHHHHHHHHHTT-S-HHHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhc---cCCHHHHHHHHHhhhccCCHHHHHH
Confidence 4567777777776421 33445555666666677776665555555553 3466667778888888888877777
Q ss_pred HHHHHHHcCC-CCCCHHHHHHHHHHHHhcCC--HHHHHHHHH
Q 042546 500 CFQKMVEKEG-TSHAGYAIDLLVNTYCSKNR--AIDACKFVH 538 (671)
Q Consensus 500 ~~~~m~~~~g-~~p~~~~~~~li~~~~~~g~--~~~A~~~~~ 538 (671)
+++.... .. +++.. .+ .++.++...+. .+.+++.+.
T Consensus 223 ~l~~~l~-~~~v~~~d-~~-~~~~~~~~~~~~~~~~~~~~~~ 261 (324)
T PF11838_consen 223 LLDLLLS-NDKVRSQD-IR-YVLAGLASSNPVGRDLAWEFFK 261 (324)
T ss_dssp HHHHHHC-TSTS-TTT-HH-HHHHHHH-CSTTCHHHHHHHHH
T ss_pred HHHHHcC-CcccccHH-HH-HHHHHHhcCChhhHHHHHHHHH
Confidence 7777776 43 44433 33 33333332332 255555543
No 401
>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only]
Probab=35.67 E-value=5.1e+02 Score=26.68 Aligned_cols=89 Identities=11% Similarity=0.048 Sum_probs=58.7
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH---H-----HHhcCCHHHHHHHHHHHHHc
Q 042546 436 EGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIK---G-----HCVAGDLDKAADCFQKMVEK 507 (671)
Q Consensus 436 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~---~-----~~~~g~~~~a~~~~~~m~~~ 507 (671)
...+.||..+.|.+.+.++..-..+-...+|+-..+.+ .|=.+-+-++|- + -.+...-+++.++++.|...
T Consensus 176 tkkitPd~Y~lnWf~sLFas~~Stev~~a~WdlY~qqa-DPF~vffLaliiLiNake~ILq~~sdsKEe~ikfLenmp~~ 254 (669)
T KOG3636|consen 176 TKKITPDMYTLNWFASLFASSMSTEVCHALWDLYIQQA-DPFLVFFLALIILINAKEEILQVKSDSKEEAIKFLENMPAQ 254 (669)
T ss_pred ccccCchHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC-CceehHHHHHHHhcccHHHHhhhccccHHHHHHHHHcCchh
Confidence 35678999999988888888888888888888877754 344344433332 1 13445678888888888762
Q ss_pred CCCCCCHHHHHHHHHHHHh
Q 042546 508 EGTSHAGYAIDLLVNTYCS 526 (671)
Q Consensus 508 ~g~~p~~~~~~~li~~~~~ 526 (671)
..+ -|+.-+-.|..-|+.
T Consensus 255 L~~-eDvpDffsLAqyY~~ 272 (669)
T KOG3636|consen 255 LSV-EDVPDFFSLAQYYSD 272 (669)
T ss_pred ccc-ccchhHHHHHHHHhh
Confidence 222 355556666666653
No 402
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=35.38 E-value=5.6e+02 Score=29.07 Aligned_cols=77 Identities=16% Similarity=0.141 Sum_probs=46.7
Q ss_pred HHHhhcccccChHHHHHHHHHhCCChHHHHHHHHHHHHcCCC------------CCCHHHHHHHHHHHHccCChHHHHHH
Q 042546 256 RQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFV------------KHDESSYNAMASVLGREDCIDRFWKV 323 (671)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~------------~~~~~~~~~li~~~~~~g~~~~A~~~ 323 (671)
..+.+.++.++...+..+.+...|++.+|+.++++.....+- ..|......+++.+. .++..+++.+
T Consensus 189 ~Il~~EgI~id~eAL~lIA~~A~GsmRdALsLLdQAia~~~~~It~~~V~~~LG~~d~~~i~~ll~aL~-~~d~~~~l~~ 267 (830)
T PRK07003 189 RILGEERIAFEPQALRLLARAAQGSMRDALSLTDQAIAYSANEVTETAVSGMLGALDQTYMVRLLDALA-AGDGPEILAV 267 (830)
T ss_pred HHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCcCHHHHHHHhCCCCHHHHHHHHHHHH-cCCHHHHHHH
Confidence 334456778888889888888889999999998875532110 122222333333332 3566666666
Q ss_pred HHHHHHcCCC
Q 042546 324 LDEMRSKGYE 333 (671)
Q Consensus 324 ~~~m~~~g~~ 333 (671)
++++...|+.
T Consensus 268 ~~~l~~~g~~ 277 (830)
T PRK07003 268 ADEMALRSLS 277 (830)
T ss_pred HHHHHHhCCC
Confidence 6666665553
No 403
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=34.79 E-value=3.6e+02 Score=29.78 Aligned_cols=39 Identities=15% Similarity=0.119 Sum_probs=28.9
Q ss_pred HHHHHhhcccccChHHHHHHHHHhCCChHHHHHHHHHHH
Q 042546 254 VERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAE 292 (671)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~f~~~~ 292 (671)
+...+.+.|+.+++..+..++....|++..|+.++++..
T Consensus 192 L~~i~~~egi~ie~~AL~~La~~s~GslR~al~lLdq~i 230 (618)
T PRK14951 192 LTQVLAAENVPAEPQALRLLARAARGSMRDALSLTDQAI 230 (618)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 334445567888888888888887889988888877654
No 404
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=34.56 E-value=2.5e+02 Score=29.94 Aligned_cols=93 Identities=12% Similarity=0.176 Sum_probs=60.0
Q ss_pred HHHhhhcCCch-----------hHHHHHHhcCCCCCHHHHHHHHHhcCCChHHHHHHHHHHhhcCCCCCCHHHHHHHHH-
Q 042546 105 SDIFYKFSDVN-----------DISKQLELSGVVFTHEMVLKVLKNLESSPDEARRFFNWVLEKESERLSSKTYNLMLR- 172 (671)
Q Consensus 105 ~~~l~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~f~~m~~~~~~~~~~~~~n~li~- 172 (671)
.+++++|.... -+..-+...+...+...+.-+.....|.+.+|+.++|.+....+ +.++...+-.
T Consensus 164 ~TIlSRcq~f~fkri~~~~I~~~L~~i~~~E~I~~e~~aL~~ia~~a~Gs~RDalslLDq~i~~~~---~~It~~~v~~~ 240 (515)
T COG2812 164 NTILSRCQRFDFKRLDLEEIAKHLAAILDKEGINIEEDALSLIARAAEGSLRDALSLLDQAIAFGE---GEITLESVRDM 240 (515)
T ss_pred hhhhhccccccccCCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHHcCCChhhHHHHHHHHHHccC---CcccHHHHHHH
Confidence 46777776541 23334455677777777766666668999999999999987221 2223222221
Q ss_pred -------------HHHccCcHHHHHHHHHHHHHcCCCCCHH
Q 042546 173 -------------IVGVHGLVQEFWGLVDVMKKKGYGVASH 200 (671)
Q Consensus 173 -------------~~~~~g~~~~a~~l~~~m~~~g~~p~~~ 200 (671)
-....|+..+++..++++...|..|..+
T Consensus 241 lG~~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~G~~~~~~ 281 (515)
T COG2812 241 LGLTDIEKLLSLLEAILKGDAKEALRLINELIEEGKDPEAF 281 (515)
T ss_pred hCCCCHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcCHHHH
Confidence 1234578888888888888888766443
No 405
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=34.53 E-value=3.8e+02 Score=24.92 Aligned_cols=65 Identities=14% Similarity=0.155 Sum_probs=30.7
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCC---CHHHH--HHHHHHHHhcCCHHHHHHHHHHHH
Q 042546 510 TSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKP---WHTTY--EELIKNLLVQRGFKDALSLLCLMK 577 (671)
Q Consensus 510 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p---~~~~~--~~li~~~~~~g~~~~A~~l~~~m~ 577 (671)
+.++..-+|.||--|.-...+.+|-+.|..- .++.| |..++ ..-|......|++++|++....+.
T Consensus 22 ~~~~~~d~n~LVmnylv~eg~~EaA~~Fa~e---~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~ 91 (228)
T KOG2659|consen 22 VSVMREDLNRLVMNYLVHEGYVEAAEKFAKE---SGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLN 91 (228)
T ss_pred cCcchhhHHHHHHHHHHhccHHHHHHHhccc---cCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhC
Confidence 3444444555554444444444444444332 23333 22222 223444556666666666666554
No 406
>COG4003 Uncharacterized protein conserved in archaea [Function unknown]
Probab=34.43 E-value=2e+02 Score=21.56 Aligned_cols=36 Identities=11% Similarity=0.276 Sum_probs=26.5
Q ss_pred HHHHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHH
Q 042546 587 PFIKYVSKSGTSDDAIAFLKGMTSKRFPSMSVVLCL 622 (671)
Q Consensus 587 t~~~~l~~~g~~~~A~~~~~~m~~~~~p~~~~~~~l 622 (671)
|.++.+.+|.-.++|+++++-|.+.+..+...-+.|
T Consensus 36 tV~D~L~rCdT~EEAlEii~yleKrGEi~~E~A~~L 71 (98)
T COG4003 36 TVIDFLRRCDTEEEALEIINYLEKRGEITPEMAKAL 71 (98)
T ss_pred hHHHHHHHhCcHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 457777888888889998888888776665544433
No 407
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=34.38 E-value=3.1e+02 Score=26.95 Aligned_cols=123 Identities=9% Similarity=-0.007 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 042546 424 MGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQK 503 (671)
Q Consensus 424 ~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 503 (671)
+.+|+++|++.. +.-..+|+ +..+...--...+.+.++....-+..-.-+.-+-.+.|+..+|.+.|+.
T Consensus 232 i~~AE~l~k~AL----ka~e~~yr-------~sqq~qh~~~~~da~~rRDtnvl~YIKRRLAMCARklGrlrEA~K~~RD 300 (556)
T KOG3807|consen 232 IVDAERLFKQAL----KAGETIYR-------QSQQCQHQSPQHEAQLRRDTNVLVYIKRRLAMCARKLGRLREAVKIMRD 300 (556)
T ss_pred HHHHHHHHHHHH----HHHHHHHh-------hHHHHhhhccchhhhhhcccchhhHHHHHHHHHHHHhhhHHHHHHHHHH
Q ss_pred HHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 042546 504 MVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELI 557 (671)
Q Consensus 504 m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li 557 (671)
+.++..+..-..+...||.++....-+.+...++.+-.+-.--+.-...|++-+
T Consensus 301 L~ke~pl~t~lniheNLiEalLE~QAYADvqavLakYDdislPkSA~icYTaAL 354 (556)
T KOG3807|consen 301 LMKEFPLLTMLNIHENLLEALLELQAYADVQAVLAKYDDISLPKSAAICYTAAL 354 (556)
T ss_pred HhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCcchHHHHHHHHH
No 408
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=34.29 E-value=2.5e+02 Score=22.62 Aligned_cols=77 Identities=10% Similarity=0.006 Sum_probs=29.7
Q ss_pred CHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 042546 493 DLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSL 572 (671)
Q Consensus 493 ~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l 572 (671)
..++|..+.+-+.. .+. ....+--+-+..+.+.|++++| +... .....||...|-+|-. .+.|..+++...
T Consensus 21 cH~EA~tIa~wL~~-~~~-~~E~v~lIr~~sLmNrG~Yq~A--Ll~~---~~~~~pdL~p~~AL~a--~klGL~~~~e~~ 91 (116)
T PF09477_consen 21 CHQEANTIADWLEQ-EGE-MEEVVALIRLSSLMNRGDYQEA--LLLP---QCHCYPDLEPWAALCA--WKLGLASALESR 91 (116)
T ss_dssp -HHHHHHHHHHHHH-TTT-THHHHHHHHHHHHHHTT-HHHH--HHHH---TTS--GGGHHHHHHHH--HHCT-HHHHHHH
T ss_pred HHHHHHHHHHHHHh-CCc-HHHHHHHHHHHHHHhhHHHHHH--HHhc---ccCCCccHHHHHHHHH--HhhccHHHHHHH
Confidence 34555555555544 222 1122222222334455555555 1111 1133455555544432 245555555555
Q ss_pred HHHHHh
Q 042546 573 LCLMKD 578 (671)
Q Consensus 573 ~~~m~~ 578 (671)
+.++..
T Consensus 92 l~rla~ 97 (116)
T PF09477_consen 92 LTRLAS 97 (116)
T ss_dssp HHHHCT
T ss_pred HHHHHh
Confidence 554443
No 409
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=34.16 E-value=6.6e+02 Score=27.49 Aligned_cols=64 Identities=8% Similarity=0.055 Sum_probs=40.1
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 042546 406 LTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGS 474 (671)
Q Consensus 406 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 474 (671)
+....+..|+..+.. =+.+.-.+++.++.. . + ...+..++++....|-.+...-+.+.+....+
T Consensus 308 ~~~~~f~~lv~~lR~-~~~e~l~~l~~~~~~-~--~-~~~r~~~~Dal~~~GT~~a~~~i~~~i~~~~~ 371 (574)
T smart00638 308 PAAAKFLRLVRLLRT-LSEEQLEQLWRQLYE-K--K-KKARRIFLDAVAQAGTPPALKFIKQWIKNKKI 371 (574)
T ss_pred chHHHHHHHHHHHHh-CCHHHHHHHHHHHHh-C--C-HHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCC
Confidence 344466666665543 345666667776653 1 1 56778888888888877766666666665443
No 410
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=33.68 E-value=4.5e+02 Score=25.47 Aligned_cols=64 Identities=6% Similarity=0.186 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCCCCHHHHHHHHH---HHHhcCCHHHHHHHHHHHHHh
Q 042546 478 DKMWVSLIKGHCVAGDLDKAADCFQKMVEK---EGTSHAGYAIDLLVN---TYCSKNRAIDACKFVHNCVRE 543 (671)
Q Consensus 478 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---~g~~p~~~~~~~li~---~~~~~g~~~~A~~~~~~m~~~ 543 (671)
...|..+...|++.++.+.+.++.++..++ .|.+.|+.. +.|. .|....-+++-.+..+.|.++
T Consensus 115 ~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l--~kiRlg~~y~d~~vV~e~lE~~~~~iEk 184 (412)
T COG5187 115 SEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFL--CKIRLGLIYGDRKVVEESLEVADDIIEK 184 (412)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHH--HHHHHHHhhccHHHHHHHHHHHHHHHHh
Confidence 345555666666666666666655544330 344444322 2222 122333345555555555554
No 411
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=33.53 E-value=2.5e+02 Score=30.55 Aligned_cols=75 Identities=9% Similarity=0.052 Sum_probs=56.7
Q ss_pred HHHHHHHccCChHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHhCCChH------HHHHHHHHHHhCCCCCCHHHHHHH
Q 042546 306 AMASVLGREDCIDRFWKVLDEMRSK--GYEMEMETCVKVLGRFSERNMVK------EAVDLYEFAMACKNKPSVNCCTFL 377 (671)
Q Consensus 306 ~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~t~~~li~~~~~~g~~~------~a~~l~~~m~~~g~~p~~~~~~~l 377 (671)
+|+.+|..+|++..+.++++.+... |-+.=...||.-|+...+.|.++ .|.++++. ..+.-|..||..+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~---a~ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQ---ARLNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHH---hhcCCcchHHHHH
Confidence 8999999999999999999998765 33334667888899999999764 34444443 3477788899888
Q ss_pred HHHHHh
Q 042546 378 LRKIVV 383 (671)
Q Consensus 378 l~~~~~ 383 (671)
+.+-..
T Consensus 110 ~~~sln 115 (1117)
T COG5108 110 CQASLN 115 (1117)
T ss_pred HHhhcC
Confidence 877543
No 412
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=33.39 E-value=3.1e+02 Score=26.89 Aligned_cols=54 Identities=13% Similarity=0.203 Sum_probs=36.2
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHh
Q 042546 305 NAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMA 364 (671)
Q Consensus 305 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~ 364 (671)
-.++..+.+.++..+..+.+..++ ....-...+......|++..|+++..+..+
T Consensus 102 L~Il~~~rkr~~l~~ll~~L~~i~------~v~~~~~~l~~ll~~~dy~~Al~li~~~~~ 155 (291)
T PF10475_consen 102 LEILRLQRKRQNLKKLLEKLEQIK------TVQQTQSRLQELLEEGDYPGALDLIEECQQ 155 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 344555666666666666666665 234455667777788888888888887763
No 413
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=33.32 E-value=5.2e+02 Score=26.04 Aligned_cols=54 Identities=6% Similarity=-0.039 Sum_probs=22.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCC-----CCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 042546 414 VLKALISVGRMGECNKILKAMEEGGF-----IASSNMKSKIAFRLSSAGKKDEANEFMD 467 (671)
Q Consensus 414 li~~~~~~g~~~~A~~~~~~m~~~g~-----~~~~~~~~~li~~~~~~g~~~~A~~~~~ 467 (671)
+-.+..-.+.++++++.|+...+--. .....+|-.|-..|.+..++++|.-+..
T Consensus 128 ~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~ 186 (518)
T KOG1941|consen 128 MGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPC 186 (518)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhH
Confidence 33444444445555555544332110 0112344444445555555555544433
No 414
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=33.22 E-value=2.5e+02 Score=24.01 Aligned_cols=33 Identities=18% Similarity=0.189 Sum_probs=16.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 042546 413 SVLKALISVGRMGECNKILKAMEEGGFIASSNM 445 (671)
Q Consensus 413 ~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~ 445 (671)
.++..+...++.-.|.++++++.+.+...+..|
T Consensus 25 ~vl~~L~~~~~~~sAeei~~~l~~~~p~islaT 57 (145)
T COG0735 25 AVLELLLEADGHLSAEELYEELREEGPGISLAT 57 (145)
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhH
Confidence 344444545444556666666665544333333
No 415
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=32.89 E-value=5.6e+02 Score=26.28 Aligned_cols=53 Identities=11% Similarity=0.123 Sum_probs=31.5
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCCHH--HHHHHHHHHHh--cCCHHHHHHHHHHHHH
Q 042546 488 HCVAGDLDKAADCFQKMVEKEGTSHAGY--AIDLLVNTYCS--KNRAIDACKFVHNCVR 542 (671)
Q Consensus 488 ~~~~g~~~~a~~~~~~m~~~~g~~p~~~--~~~~li~~~~~--~g~~~~A~~~~~~m~~ 542 (671)
..+.+++..|.++++.+.+ . +.++.. .+..+..+|.. .-++++|.+.++....
T Consensus 141 l~n~~~y~aA~~~l~~l~~-r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 141 LFNRYDYGAAARILEELLR-R-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred HHhcCCHHHHHHHHHHHHH-h-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 3466777777777777776 4 444443 34444444432 5566667777766654
No 416
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=32.75 E-value=2.8e+02 Score=27.43 Aligned_cols=82 Identities=9% Similarity=-0.073 Sum_probs=54.8
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 042546 416 KALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLD 495 (671)
Q Consensus 416 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~ 495 (671)
+-|.+.|.+++|++.|..-.... +-|.+++..-..+|.+...+..|+.=....... | ...+.+|++.+...
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia~~-P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaL----d----~~Y~KAYSRR~~AR 175 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIAVY-PHNPVYHINRALAYLKQKSFAQAEEDCEAAIAL----D----KLYVKAYSRRMQAR 175 (536)
T ss_pred hhhhhccchhHHHHHhhhhhccC-CCCccchhhHHHHHHHHHHHHHHHHhHHHHHHh----h----HHHHHHHHHHHHHH
Confidence 35789999999999998766543 238888988888999988888777655555432 1 22355666655544
Q ss_pred HHHHHHHHHHH
Q 042546 496 KAADCFQKMVE 506 (671)
Q Consensus 496 ~a~~~~~~m~~ 506 (671)
.++....+..+
T Consensus 176 ~~Lg~~~EAKk 186 (536)
T KOG4648|consen 176 ESLGNNMEAKK 186 (536)
T ss_pred HHHhhHHHHHH
Confidence 44444444433
No 417
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=32.67 E-value=1.6e+02 Score=23.73 Aligned_cols=41 Identities=12% Similarity=0.198 Sum_probs=24.8
Q ss_pred HHHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHHHH
Q 042546 588 FIKYVSKSGTSDDAIAFLKGMTSKRFPSMSVVLCLFAAFFQ 628 (671)
Q Consensus 588 ~~~~l~~~g~~~~A~~~~~~m~~~~~p~~~~~~~l~~~~~~ 628 (671)
.++.+.+|...++|+++++-|.+.+..+...-+.|-..+.+
T Consensus 67 ViD~lrRC~T~EEALEVInylek~GEIt~e~A~eLr~~L~~ 107 (128)
T PF09868_consen 67 VIDYLRRCKTDEEALEVINYLEKRGEITPEEAKELRSILVK 107 (128)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 45556677777777777777777665555544444433333
No 418
>PHA02989 ankyrin repeat protein; Provisional
Probab=32.56 E-value=6.4e+02 Score=26.89 Aligned_cols=15 Identities=0% Similarity=0.036 Sum_probs=7.1
Q ss_pred HHHHHHHHhCCCCCC
Q 042546 356 VDLYEFAMACKNKPS 370 (671)
Q Consensus 356 ~~l~~~m~~~g~~p~ 370 (671)
.++.+.+.+.|..++
T Consensus 88 ~~iv~~Ll~~Gadin 102 (494)
T PHA02989 88 KKIVKLLLKFGADIN 102 (494)
T ss_pred HHHHHHHHHCCCCCC
Confidence 344444445554444
No 419
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=32.30 E-value=4.3e+02 Score=26.83 Aligned_cols=94 Identities=12% Similarity=0.039 Sum_probs=51.9
Q ss_pred HHHHhhcccccChHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCC
Q 042546 255 ERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEM 334 (671)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 334 (671)
...+.+.|..+++..+..+....+|++..|...++..... + .+.... +...++. |. +
T Consensus 188 ~~~~~~~g~~i~~~al~~ia~~s~G~~R~al~~l~~~~~~-~-----------------~~~It~--~~v~~~l--~~-~ 244 (363)
T PRK14961 188 KYILIKESIDTDEYALKLIAYHAHGSMRDALNLLEHAINL-G-----------------KGNINI--KNVTDML--GL-L 244 (363)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHh-c-----------------CCCCCH--HHHHHHH--CC-C
Confidence 3344455777777777777777778888888887765321 1 111111 1111221 22 2
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHH
Q 042546 335 EMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVN 372 (671)
Q Consensus 335 ~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ 372 (671)
+......++.+.. .++.+++..+++.+.+.|..|...
T Consensus 245 ~~~~i~~l~~ai~-~~~~~~~~~~~~~l~~~g~~~~~i 281 (363)
T PRK14961 245 NEKQSFLLTDALL-KKDSKKTMLLLNKISSIGIEWENI 281 (363)
T ss_pred CHHHHHHHHHHHH-cCCHHHHHHHHHHHHHcCCCHHHH
Confidence 3344444555443 366777777777777666665543
No 420
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=32.12 E-value=3.3e+02 Score=25.34 Aligned_cols=98 Identities=17% Similarity=0.108 Sum_probs=61.3
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC---CHHHH--HHHHHHHHhcCCHHHHHHHHHHHHHhCCCCC
Q 042546 474 SDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSH---AGYAI--DLLVNTYCSKNRAIDACKFVHNCVREYDLKP 548 (671)
Q Consensus 474 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p---~~~~~--~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p 548 (671)
+.++..-+|.||--|.-...+.+|-+.|..- .|+.| |..++ ..-|......|++++|.+...++..+ -+..
T Consensus 22 ~~~~~~d~n~LVmnylv~eg~~EaA~~Fa~e---~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~Pe-iLd~ 97 (228)
T KOG2659|consen 22 VSVMREDLNRLVMNYLVHEGYVEAAEKFAKE---SGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPE-ILDT 97 (228)
T ss_pred cCcchhhHHHHHHHHHHhccHHHHHHHhccc---cCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChH-HHcc
Confidence 3566666777776666666666666666543 56655 33333 44566678899999999999988653 3444
Q ss_pred CHHHHHHHHH----HHHhcCCHHHHHHHHHH
Q 042546 549 WHTTYEELIK----NLLVQRGFKDALSLLCL 575 (671)
Q Consensus 549 ~~~~~~~li~----~~~~~g~~~~A~~l~~~ 575 (671)
|...+-.|.. -..+.|..++|+++.+.
T Consensus 98 n~~l~F~Lq~q~lIEliR~~~~eeal~F~q~ 128 (228)
T KOG2659|consen 98 NRELFFHLQQLHLIELIREGKTEEALEFAQT 128 (228)
T ss_pred chhHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 5433322221 24567778888877664
No 421
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=31.42 E-value=5.5e+02 Score=25.77 Aligned_cols=39 Identities=8% Similarity=0.198 Sum_probs=27.4
Q ss_pred HHHHHhhcccccChHHHHHHHHHhCCChHHHHHHHHHHH
Q 042546 254 VERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAE 292 (671)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~f~~~~ 292 (671)
+...+.+.|..+++..+..++...+|++..|....+.+.
T Consensus 185 l~~~~~~~g~~i~~~a~~~l~~~~~g~~~~a~~~lekl~ 223 (355)
T TIGR02397 185 LKKILDKEGIKIEDEALELIARAADGSLRDALSLLDQLI 223 (355)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHcCCChHHHHHHHHHHH
Confidence 344445567777877777777777788888877776654
No 422
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=30.99 E-value=2e+02 Score=23.96 Aligned_cols=40 Identities=13% Similarity=0.227 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHhCCCCCCHHHH----HHHHHhcCChHHHHHHHH
Q 042546 567 KDALSLLCLMKDHGFPPFVDPF----IKYVSKSGTSDDAIAFLK 606 (671)
Q Consensus 567 ~~A~~l~~~m~~~~~~p~~~t~----~~~l~~~g~~~~A~~~~~ 606 (671)
++..++|..|..+|+-.....| ...+...|++.+|.++|+
T Consensus 80 ~dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 80 DEPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4466778888877776665444 445567788888887775
No 423
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=30.93 E-value=2.6e+02 Score=26.56 Aligned_cols=57 Identities=12% Similarity=0.048 Sum_probs=28.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCC----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 042546 519 LLVNTYCSKNRAIDACKFVHNCVREYD----LKPWHTTYEELIKNLLVQRGFKDALSLLCL 575 (671)
Q Consensus 519 ~li~~~~~~g~~~~A~~~~~~m~~~~~----~~p~~~~~~~li~~~~~~g~~~~A~~l~~~ 575 (671)
-+..-|.+.|++++|.++|+.+...+. ..+...+...+..++.+.|+.++.+.+.-+
T Consensus 183 ~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~le 243 (247)
T PF11817_consen 183 EMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLE 243 (247)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 344556666666666666666643211 112222333444445555665555554433
No 424
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=30.67 E-value=5.2e+02 Score=25.26 Aligned_cols=22 Identities=9% Similarity=0.083 Sum_probs=13.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHH
Q 042546 549 WHTTYEELIKNLLVQRGFKDAL 570 (671)
Q Consensus 549 ~~~~~~~li~~~~~~g~~~~A~ 570 (671)
|...|..++.||.-.|+...+.
T Consensus 196 d~~~Y~~v~~AY~lLgk~~~~~ 217 (291)
T PF10475_consen 196 DPDKYSKVQEAYQLLGKTQSAM 217 (291)
T ss_pred CHHHHHHHHHHHHHHhhhHHHH
Confidence 5556666666666666555544
No 425
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=30.57 E-value=5.8e+02 Score=27.08 Aligned_cols=80 Identities=9% Similarity=0.086 Sum_probs=45.5
Q ss_pred HHHHhcCCCCCHHHHHHHHHhcCCChHHHHHHHHHHhhcCC--CC----------CCHHHHHHHHHHHHccCcHHHHHHH
Q 042546 119 KQLELSGVVFTHEMVLKVLKNLESSPDEARRFFNWVLEKES--ER----------LSSKTYNLMLRIVGVHGLVQEFWGL 186 (671)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~f~~m~~~~~--~~----------~~~~~~n~li~~~~~~g~~~~a~~l 186 (671)
......+..++...+..+.....|++..|+.+++......+ +. .+......++..+...+....|+..
T Consensus 191 ~i~~~Egi~~e~eAL~~Ia~~S~Gd~RdAL~lLeq~i~~~~~~it~~~V~~~lg~~~~~~~~~l~~si~~~d~~~~al~~ 270 (484)
T PRK14956 191 KLCKIENVQYDQEGLFWIAKKGDGSVRDMLSFMEQAIVFTDSKLTGVKIRKMIGYHGIEFLTSFIKSLIDPDNHSKSLEI 270 (484)
T ss_pred HHHHHcCCCCCHHHHHHHHHHcCChHHHHHHHHHHHHHhCCCCcCHHHHHHHhCCCCHHHHHHHHHHHHcCCcHHHHHHH
Confidence 33444677777777766666668999999999988643111 11 1111122333333333334566666
Q ss_pred HHHHHHcCCCCC
Q 042546 187 VDVMKKKGYGVA 198 (671)
Q Consensus 187 ~~~m~~~g~~p~ 198 (671)
+++|.+.|..|.
T Consensus 271 l~~l~~~G~d~~ 282 (484)
T PRK14956 271 LESLYQEGQDIY 282 (484)
T ss_pred HHHHHHcCCCHH
Confidence 666666665443
No 426
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=30.04 E-value=5.4e+02 Score=29.67 Aligned_cols=91 Identities=10% Similarity=0.136 Sum_probs=50.8
Q ss_pred HHHhhcccccChHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCC
Q 042546 256 RQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEME 335 (671)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 335 (671)
..+.+.++.++...+..+++..+|++..++.+++++... ...+.+++..+...+.. .+
T Consensus 190 ~il~~EGv~id~eal~lLa~~sgGdlR~Al~eLEKLia~--~~~~~IT~e~V~allg~--------------------~~ 247 (824)
T PRK07764 190 RICAQEGVPVEPGVLPLVIRAGGGSVRDSLSVLDQLLAG--AGPEGVTYERAVALLGV--------------------TD 247 (824)
T ss_pred HHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhh--cCCCCCCHHHHHHHhcC--------------------CC
Confidence 334445777888888888887788888888888876531 12223333333222211 12
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCC
Q 042546 336 METCVKVLGRFSERNMVKEAVDLYEFAMACKNKP 369 (671)
Q Consensus 336 ~~t~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p 369 (671)
......++++.. .++...++.+++++.+.|..|
T Consensus 248 ~~~I~~lidAL~-~~D~a~al~~l~~Li~~G~dp 280 (824)
T PRK07764 248 SALIDEAVDALA-AGDGAALFGTVDRVIEAGHDP 280 (824)
T ss_pred HHHHHHHHHHHH-cCCHHHHHHHHHHHHHcCCCH
Confidence 222334444443 355666666777766665543
No 427
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=30.03 E-value=5.7e+02 Score=25.49 Aligned_cols=84 Identities=15% Similarity=0.140 Sum_probs=57.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHC---CCCCCHHHH--HHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHHH-
Q 042546 412 NSVLKALISVGRMGECNKILKAMEEG---GFIASSNMK--SKIAFRLSSAGKKDEANEFMDHMEA-----SGSDVGDKM- 480 (671)
Q Consensus 412 ~~li~~~~~~g~~~~A~~~~~~m~~~---g~~~~~~~~--~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~~~~~~- 480 (671)
..++...-+.++.++|.+.++++.+. --.|+.+.| +.+...+...|+..++.+++++.++ .|+.|++.+
T Consensus 79 ei~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~~ 158 (380)
T KOG2908|consen 79 EILLVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHSS 158 (380)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhhh
Confidence 34445556667899999999988752 225677666 4556667788999999999998887 677776655
Q ss_pred HHHHHHHHHh-cCCHH
Q 042546 481 WVSLIKGHCV-AGDLD 495 (671)
Q Consensus 481 ~~~li~~~~~-~g~~~ 495 (671)
|..+-+-|.+ .|++.
T Consensus 159 fY~lssqYyk~~~d~a 174 (380)
T KOG2908|consen 159 FYSLSSQYYKKIGDFA 174 (380)
T ss_pred HHHHHHHHHHHHHhHH
Confidence 5555554443 34444
No 428
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=29.94 E-value=2e+02 Score=22.21 Aligned_cols=44 Identities=11% Similarity=0.055 Sum_probs=25.6
Q ss_pred HHHHHhcCChHHHHHHHHHhhhCCC--CCHHHHHHHHHHHHHcCCH
Q 042546 589 IKYVSKSGTSDDAIAFLKGMTSKRF--PSMSVVLCLFAAFFQARRH 632 (671)
Q Consensus 589 ~~~l~~~g~~~~A~~~~~~m~~~~~--p~~~~~~~l~~~~~~~g~~ 632 (671)
...+...|++++|...+-.+.+..+ -+...-..|+..+.-.|.-
T Consensus 29 A~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~ 74 (90)
T PF14561_consen 29 ADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPG 74 (90)
T ss_dssp HHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCC
Confidence 4555677777777777766666432 3455556666666666653
No 429
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=29.91 E-value=1.1e+02 Score=21.93 Aligned_cols=49 Identities=12% Similarity=0.046 Sum_probs=27.2
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 042546 406 LTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSS 455 (671)
Q Consensus 406 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~ 455 (671)
|+...++.++..+++-.-++++...+.+..+.|. .+..+|---+..+++
T Consensus 6 ~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~LaR 54 (65)
T PF09454_consen 6 AEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLAR 54 (65)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHH
Confidence 3444566666666666666666666666666663 445555444444443
No 430
>KOG0159 consensus Cytochrome P450 CYP11/CYP12/CYP24/CYP27 subfamilies [Secondary metabolites biosynthesis, transport and catabolism]
Probab=29.80 E-value=4.7e+02 Score=27.86 Aligned_cols=37 Identities=14% Similarity=-0.002 Sum_probs=24.3
Q ss_pred CCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 042546 349 RNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSK 385 (671)
Q Consensus 349 ~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~ 385 (671)
..+.+.|....-+|.-.|+..+..|....+-.+++..
T Consensus 311 ~l~~k~~~~~~~dll~aGvDTTs~tl~~~Ly~LarnP 347 (519)
T KOG0159|consen 311 ELSRKDAKANVMDLLAAGVDTTSNTLLWALYELARNP 347 (519)
T ss_pred cCCHHHHHHHHHHHHHHhccchHHHHHHHHHHHhcCh
Confidence 3466677777777777777777766666666555544
No 431
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=29.27 E-value=3.9e+02 Score=29.36 Aligned_cols=39 Identities=10% Similarity=0.151 Sum_probs=29.8
Q ss_pred HHHHHhhcccccChHHHHHHHHHhCCChHHHHHHHHHHH
Q 042546 254 VERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAE 292 (671)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~f~~~~ 292 (671)
+...+.+.+..+++..+..++...+|++..|...+++..
T Consensus 200 L~~i~~kegi~i~~eAl~lIa~~a~Gdlr~al~~Ldkli 238 (598)
T PRK09111 200 LSRIAAKEGVEVEDEALALIARAAEGSVRDGLSLLDQAI 238 (598)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 344455578888888888888888889999988887654
No 432
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=28.79 E-value=5.7e+02 Score=25.15 Aligned_cols=118 Identities=12% Similarity=0.155 Sum_probs=70.9
Q ss_pred HHHHHhcCccc-HHHHHHHHHHHHHcCC----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 042546 378 LRKIVVSKQLD-MRLFSKVVRVFRENGN----VLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFR 452 (671)
Q Consensus 378 l~~~~~~~~~~-~~~~~~~~~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~ 452 (671)
+...| |..+ ...+.+.++.+...+. ..+......++....+.|..+.-..+++.... .++..--..++.+
T Consensus 136 ~~~a~--~~~~~~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~---~~~~~~k~~~l~a 210 (324)
T PF11838_consen 136 LSLAC--GDPECVAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKN---STSPEEKRRLLSA 210 (324)
T ss_dssp HHHHH--T-HHHHHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHT---TSTHHHHHHHHHH
T ss_pred HHHhc--cchhHHHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhc---cCCHHHHHHHHHh
Confidence 44444 4333 4556666666665422 45566677777778888887776666666664 4577788899999
Q ss_pred HHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCH--HHHHHHHH
Q 042546 453 LSSAGKKDEANEFMDHMEASG-SDVGDKMWVSLIKGHCVAGDL--DKAADCFQ 502 (671)
Q Consensus 453 ~~~~g~~~~A~~~~~~m~~~g-~~~~~~~~~~li~~~~~~g~~--~~a~~~~~ 502 (671)
.+...+.+...++++.....+ +.+.. ...++.++...+.. +.+.+.+.
T Consensus 211 La~~~d~~~~~~~l~~~l~~~~v~~~d--~~~~~~~~~~~~~~~~~~~~~~~~ 261 (324)
T PF11838_consen 211 LACSPDPELLKRLLDLLLSNDKVRSQD--IRYVLAGLASSNPVGRDLAWEFFK 261 (324)
T ss_dssp HTT-S-HHHHHHHHHHHHCTSTS-TTT--HHHHHHHHH-CSTTCHHHHHHHHH
T ss_pred hhccCCHHHHHHHHHHHcCCcccccHH--HHHHHHHHhcCChhhHHHHHHHHH
Confidence 999999999999999888754 44333 33444455533333 55655544
No 433
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=28.25 E-value=3.5e+02 Score=22.47 Aligned_cols=43 Identities=19% Similarity=0.148 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 042546 426 ECNKILKAMEEGGFIA-SSNMKSKIAFRLSSAGKKDEANEFMDH 468 (671)
Q Consensus 426 ~A~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~ 468 (671)
++.++|..|...|+-. -..-|......+.+.|++++|.++|+.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 5666666666555432 233455555555566666666666543
No 434
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=28.06 E-value=4.7e+02 Score=28.07 Aligned_cols=91 Identities=10% Similarity=-0.029 Sum_probs=53.3
Q ss_pred HHHHhhcccccChHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCC
Q 042546 255 ERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEM 334 (671)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 334 (671)
...+.+.|+.+++..+..++....|++..|...++.+... + +.++...+ .++. | .+
T Consensus 185 ~~i~~~egi~i~~~Al~~ia~~s~GdlR~aln~Lekl~~~-~---~~It~~~V-----------------~~~l--~-~~ 240 (504)
T PRK14963 185 RRLLEAEGREAEPEALQLVARLADGAMRDAESLLERLLAL-G---TPVTRKQV-----------------EEAL--G-LP 240 (504)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhc-C---CCCCHHHH-----------------HHHH--C-CC
Confidence 3444556777888888888887788888888887765431 1 11111111 1111 1 12
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCC
Q 042546 335 EMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPS 370 (671)
Q Consensus 335 ~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~ 370 (671)
.......+++++ ..++.++|+.++.++...|..|.
T Consensus 241 ~~~~if~Li~al-~~~d~~~Al~~l~~Ll~~G~~~~ 275 (504)
T PRK14963 241 PQERLRGIAAAL-AQGDAAEALSGAAQLYRDGFAAR 275 (504)
T ss_pred cHHHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCHH
Confidence 333444455555 44778888888888877776554
No 435
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=27.87 E-value=6.1e+02 Score=25.20 Aligned_cols=23 Identities=17% Similarity=0.095 Sum_probs=17.8
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCC
Q 042546 559 NLLVQRGFKDALSLLCLMKDHGF 581 (671)
Q Consensus 559 ~~~~~g~~~~A~~l~~~m~~~~~ 581 (671)
-+.++|..+.|..+++-+.+.++
T Consensus 163 fl~~aG~~E~Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 163 FLRQAGYTERAVALWQALLEFNF 185 (321)
T ss_pred HHHHCCchHHHHHHHHHHHHHHc
Confidence 34568889999999988887665
No 436
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=27.79 E-value=6.1e+02 Score=25.15 Aligned_cols=135 Identities=11% Similarity=0.044 Sum_probs=72.4
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh---CCCCCCH
Q 042546 474 SDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVRE---YDLKPWH 550 (671)
Q Consensus 474 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~~p~~ 550 (671)
+..|...+++|..+ +...+++-.+..+...+..|-.--...+-....-||+-|+.+.|.+.+....++ -|.+.|+
T Consensus 66 i~~D~~~l~~m~~~--neeki~eld~~iedaeenlGE~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDV 143 (393)
T KOG0687|consen 66 IKLDQDLLNSMKKA--NEEKIKELDEKIEDAEENLGESEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDV 143 (393)
T ss_pred eeccHHHHHHHHHh--hHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhh
Confidence 34555555555442 222334444444444442222222334555666788888888888888765543 2556666
Q ss_pred HHHHHHHHH-HHhcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHH-hcCChHHHHHHHHHhhh
Q 042546 551 TTYEELIKN-LLVQRGFKDALSLLCLMKDHGFPPFV----DPFIKYVS-KSGTSDDAIAFLKGMTS 610 (671)
Q Consensus 551 ~~~~~li~~-~~~~g~~~~A~~l~~~m~~~~~~p~~----~t~~~~l~-~~g~~~~A~~~~~~m~~ 610 (671)
..+..=+.- |....-+.+-++-.+.+.++|..-+. .+|-..|| ...++.+|-.+|-....
T Consensus 144 vf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlKvY~Gly~msvR~Fk~Aa~Lfld~vs 209 (393)
T KOG0687|consen 144 VFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLKVYQGLYCMSVRNFKEAADLFLDSVS 209 (393)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHcc
Confidence 555443332 33344455666666666776654433 34444444 44667777776655544
No 437
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=27.70 E-value=5.3e+02 Score=28.53 Aligned_cols=39 Identities=13% Similarity=0.154 Sum_probs=29.9
Q ss_pred HHHHHhhcccccChHHHHHHHHHhCCChHHHHHHHHHHH
Q 042546 254 VERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAE 292 (671)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~f~~~~ 292 (671)
+...+.+.|+.+++..+..++...+|++..|...++.+.
T Consensus 189 L~~ia~~egi~i~~~al~~La~~s~gdlr~al~~Lekl~ 227 (614)
T PRK14971 189 LQYVASKEGITAEPEALNVIAQKADGGMRDALSIFDQVV 227 (614)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 334445668888888888888888899999999887754
No 438
>PRK13342 recombination factor protein RarA; Reviewed
Probab=27.52 E-value=7.1e+02 Score=25.83 Aligned_cols=105 Identities=8% Similarity=0.129 Sum_probs=61.5
Q ss_pred ccChHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 042546 264 TFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVL 343 (671)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li 343 (671)
.+++..+..+.....|++..++.+++..... + ... ..+...+++...... ...+...+..++
T Consensus 173 ~i~~~al~~l~~~s~Gd~R~aln~Le~~~~~-~---~~I-------------t~~~v~~~~~~~~~~-~d~~~~~~~~~i 234 (413)
T PRK13342 173 ELDDEALDALARLANGDARRALNLLELAALG-V---DSI-------------TLELLEEALQKRAAR-YDKDGDEHYDLI 234 (413)
T ss_pred CCCHHHHHHHHHhCCCCHHHHHHHHHHHHHc-c---CCC-------------CHHHHHHHHhhhhhc-cCCCccHHHHHH
Confidence 5677777777776678888888888766431 0 001 122333333332111 111223344555
Q ss_pred HHHHh---CCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCc
Q 042546 344 GRFSE---RNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQ 386 (671)
Q Consensus 344 ~~~~~---~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~ 386 (671)
+++.+ .++.+.|+..+..|.+.|..|....-..++.++-..|.
T Consensus 235 sa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edig~ 280 (413)
T PRK13342 235 SALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDIGL 280 (413)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhcc
Confidence 55554 47899999999999999988876655555555444443
No 439
>PRK10292 hypothetical protein; Provisional
Probab=27.32 E-value=2.3e+02 Score=20.07 Aligned_cols=37 Identities=22% Similarity=0.338 Sum_probs=21.4
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 042546 392 FSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECN 428 (671)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 428 (671)
+-.++-.|...|.+|.......+|..-...+..+...
T Consensus 18 VGdvVl~m~~lG~e~k~i~Ia~vlrTa~a~~r~~rs~ 54 (69)
T PRK10292 18 VGKVVLEMRDLGQEPKHIVIAGVLRTALANKRIQRSE 54 (69)
T ss_pred HHHHHHHHHHcCCCcchhhHHHHHHHHHHhcccccCH
Confidence 3345556666777777766666665555555444333
No 440
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=27.09 E-value=3.7e+02 Score=22.40 Aligned_cols=49 Identities=18% Similarity=0.214 Sum_probs=36.1
Q ss_pred cHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 042546 388 DMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEE 436 (671)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 436 (671)
|.-...+-++.+....+.|++.+....+.+|-+.+++..|.++|+-.+.
T Consensus 64 D~wEvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~ 112 (149)
T KOG4077|consen 64 DGWEVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKD 112 (149)
T ss_pred hHHHHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 4345556666666677788888888888888888888888888887764
No 441
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=27.01 E-value=2.5e+02 Score=22.67 Aligned_cols=25 Identities=20% Similarity=0.279 Sum_probs=17.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCC
Q 042546 414 VLKALISVGRMGECNKILKAMEEGG 438 (671)
Q Consensus 414 li~~~~~~g~~~~A~~~~~~m~~~g 438 (671)
+|+-+.+|...++|+++.+.|.+.|
T Consensus 67 ViD~lrRC~T~EEALEVInylek~G 91 (128)
T PF09868_consen 67 VIDYLRRCKTDEEALEVINYLEKRG 91 (128)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhC
Confidence 3444566777777777777777766
No 442
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=26.92 E-value=2.4e+02 Score=22.60 Aligned_cols=24 Identities=13% Similarity=0.083 Sum_probs=15.8
Q ss_pred HHHHHHHHccCChHHHHHHHHHHH
Q 042546 305 NAMASVLGREDCIDRFWKVLDEMR 328 (671)
Q Consensus 305 ~~li~~~~~~g~~~~A~~~~~~m~ 328 (671)
..+|..|...|+.++|...+.++.
T Consensus 6 ~~~l~ey~~~~d~~ea~~~l~el~ 29 (113)
T PF02847_consen 6 FSILMEYFSSGDVDEAVECLKELK 29 (113)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHHTT
T ss_pred HHHHHHHhcCCCHHHHHHHHHHhC
Confidence 345666777778888887777753
No 443
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=26.82 E-value=2.6e+02 Score=21.64 Aligned_cols=24 Identities=21% Similarity=0.062 Sum_probs=16.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHhchH
Q 042546 621 CLFAAFFQARRHSEAQDLLSKCPR 644 (671)
Q Consensus 621 ~l~~~~~~~g~~~~A~~~~~~m~~ 644 (671)
.+.......|++++|.+.+++..+
T Consensus 46 ~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 46 NLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHH
Confidence 345566677888888888877543
No 444
>PRK07914 hypothetical protein; Reviewed
Probab=26.77 E-value=6.4e+02 Score=25.02 Aligned_cols=41 Identities=22% Similarity=0.315 Sum_probs=31.7
Q ss_pred hHHHHHHhhcccccChHHHHHHHHHhCCChHHHHHHHHHHH
Q 042546 252 DDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAE 292 (671)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~f~~~~ 292 (671)
..+...+.+.|..+++..+..++...++++.....-++.+.
T Consensus 135 ~wi~~~a~~~g~~i~~~A~~~L~~~~g~dl~~l~~EleKL~ 175 (320)
T PRK07914 135 DFVRKEFRSLRVKVDDDTVTALLDAVGSDLRELASACSQLV 175 (320)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHCccHHHHHHHHHHHh
Confidence 34667788889999999999998888888777776666553
No 445
>COG5210 GTPase-activating protein [General function prediction only]
Probab=26.65 E-value=5.9e+02 Score=27.28 Aligned_cols=58 Identities=14% Similarity=0.018 Sum_probs=38.7
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHH
Q 042546 462 ANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLL 520 (671)
Q Consensus 462 A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~l 520 (671)
.-+++..|...|+.+...++..++..+.+.-..+.+..+++.+.- .|..-....+.++
T Consensus 361 ~p~l~~hl~~~~~~~~~~~~~w~l~lF~~~~p~e~~lriwD~lf~-eg~~~l~~~~~~~ 418 (496)
T COG5210 361 DPELYEHLLREGVVLLMFAFRWFLTLFVREFPLEYALRIWDCLFL-EGSSMLFQLALAI 418 (496)
T ss_pred HHHHHHHHHHcCCchhhhhHHHHHHHHHhcCCHHHHHHHHHHHHH-hccHHHHHHHHHH
Confidence 345666777777777777777777777777777777777777766 5554444333333
No 446
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=26.39 E-value=2.9e+02 Score=23.67 Aligned_cols=59 Identities=10% Similarity=0.051 Sum_probs=30.8
Q ss_pred HHHHHhCCCCCCH--HHHHHHHHhcCChHHHHHHHHHhhhCCC-CCHHHHHHHHHHHHHcCC
Q 042546 573 LCLMKDHGFPPFV--DPFIKYVSKSGTSDDAIAFLKGMTSKRF-PSMSVVLCLFAAFFQARR 631 (671)
Q Consensus 573 ~~~m~~~~~~p~~--~t~~~~l~~~g~~~~A~~~~~~m~~~~~-p~~~~~~~l~~~~~~~g~ 631 (671)
.+.+++.|++++. ...+..+.+.+..-.|..+++.+.+.++ -+..|...-++.+...|-
T Consensus 9 ~~~lk~~glr~T~qR~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~Gl 70 (145)
T COG0735 9 IERLKEAGLRLTPQRLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAGL 70 (145)
T ss_pred HHHHHHcCCCcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCCC
Confidence 3344455554433 4446666655555666667766666544 234433333455555554
No 447
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=26.17 E-value=5.4e+02 Score=28.22 Aligned_cols=39 Identities=15% Similarity=0.217 Sum_probs=29.5
Q ss_pred HHHHhhcccccChHHHHHHHHHhCCChHHHHHHHHHHHH
Q 042546 255 ERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEE 293 (671)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~f~~~~~ 293 (671)
...+.+.|+.++...+..++...+|++..|+..++++..
T Consensus 187 ~~i~~~egi~i~~~al~~Ia~~s~GdlR~aln~Ldql~~ 225 (584)
T PRK14952 187 ARICEQEGVVVDDAVYPLVIRAGGGSPRDTLSVLDQLLA 225 (584)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHh
Confidence 344455677788888877777778899999999988754
No 448
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=26.14 E-value=5.9e+02 Score=24.41 Aligned_cols=83 Identities=14% Similarity=0.151 Sum_probs=44.9
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHH
Q 042546 441 ASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLL 520 (671)
Q Consensus 441 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~l 520 (671)
-|......+...|.+.|++.+|+..|-.-. .++...+..++.-+...|. ..++|...-.++
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~----~~~~~~~~~ll~~~~~~~~---------------~~e~dlfi~RaV 148 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAERHFLLGT----DPSAFAYVMLLEEWSTKGY---------------PSEADLFIARAV 148 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHHHTS-----HHHHHHHHHHHHHHHHHTS---------------S--HHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHHHhcC----ChhHHHHHHHHHHHHHhcC---------------CcchhHHHHHHH
Confidence 355667778888889999988887664221 2222333223332222222 222344444445
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHh
Q 042546 521 VNTYCSKNRAIDACKFVHNCVRE 543 (671)
Q Consensus 521 i~~~~~~g~~~~A~~~~~~m~~~ 543 (671)
+. |.-.+++..|...++...++
T Consensus 149 L~-yL~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 149 LQ-YLCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp HH-HHHTTBHHHHHHHHHHHHHH
T ss_pred HH-HHHhcCHHHHHHHHHHHHHH
Confidence 54 44568888888888777654
No 449
>PF13934 ELYS: Nuclear pore complex assembly
Probab=25.83 E-value=5.5e+02 Score=23.98 Aligned_cols=132 Identities=14% Similarity=0.062 Sum_probs=71.4
Q ss_pred HHHHHHHHHh--cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Q 042546 446 KSKIAFRLSS--AGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNT 523 (671)
Q Consensus 446 ~~~li~~~~~--~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~ 523 (671)
|..++.+|.. .+++++|.+.+-+- .+.|+-. .-++.++...|+.+.|..+++.+.- .. .+...-..++..
T Consensus 79 ~~~~~~g~W~LD~~~~~~A~~~L~~p---s~~~~~~--~~Il~~L~~~~~~~lAL~y~~~~~p-~l--~s~~~~~~~~~~ 150 (226)
T PF13934_consen 79 YIKFIQGFWLLDHGDFEEALELLSHP---SLIPWFP--DKILQALLRRGDPKLALRYLRAVGP-PL--SSPEALTLYFVA 150 (226)
T ss_pred HHHHHHHHHHhChHhHHHHHHHhCCC---CCCcccH--HHHHHHHHHCCChhHHHHHHHhcCC-CC--CCHHHHHHHHHH
Confidence 4455666543 55667777666321 1122211 2467777778888888888877643 22 222333333334
Q ss_pred HHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 042546 524 YCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPFIKYVS 593 (671)
Q Consensus 524 ~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~t~~~~l~ 593 (671)
..++.+.+|..+-....++. ....+..++..+..... + ...++++.+--+.+....++.-|.
T Consensus 151 -La~~~v~EAf~~~R~~~~~~----~~~l~e~l~~~~~~~~~--~-~~~~~~Ll~LPl~~~EE~~l~~~L 212 (226)
T PF13934_consen 151 -LANGLVTEAFSFQRSYPDEL----RRRLFEQLLEHCLEECA--R-SGRLDELLSLPLDEEEEQWLEKYL 212 (226)
T ss_pred -HHcCCHHHHHHHHHhCchhh----hHHHHHHHHHHHHHHhh--h-hhHHHHHHhCCCChHHHHHHHHHH
Confidence 55688888887766654421 13466677776665443 1 122455555555555555544343
No 450
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=25.44 E-value=2.3e+02 Score=20.02 Aligned_cols=46 Identities=15% Similarity=0.030 Sum_probs=21.2
Q ss_pred ccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH-----HhCCChHHHHHH
Q 042546 313 REDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRF-----SERNMVKEAVDL 358 (671)
Q Consensus 313 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~-----~~~g~~~~a~~l 358 (671)
..|++-+|.++++++-...-.|....+..+|... .+.|+.+.|..+
T Consensus 11 n~g~f~EaHEvlE~~W~~~~~~~~~~lqglIq~A~a~~h~~~gn~~gA~~l 61 (62)
T PF03745_consen 11 NAGDFFEAHEVLEELWKAAPGPERDFLQGLIQLAVALYHLRRGNPRGARRL 61 (62)
T ss_dssp HTT-HHHHHHHHHHHCCCT-CCHHHHHHHHHHHHHHHHHHHCTSHHHHHHH
T ss_pred cCCCHHHhHHHHHHHHHHCCcchHHHHHHHHHHHHHHHHHHhCCHHHHHHh
Confidence 3455666666666655432223344444444432 244555555544
No 451
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=25.42 E-value=3.9e+02 Score=23.55 Aligned_cols=36 Identities=14% Similarity=-0.014 Sum_probs=15.5
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 042546 422 GRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAG 457 (671)
Q Consensus 422 g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 457 (671)
+..-.|.++++.+.+.+...+..|...-|..+.+.|
T Consensus 39 ~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~G 74 (169)
T PRK11639 39 PGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQG 74 (169)
T ss_pred CCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCC
Confidence 333445555555554443334433333333343333
No 452
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=25.29 E-value=7.6e+02 Score=27.56 Aligned_cols=40 Identities=13% Similarity=0.090 Sum_probs=31.1
Q ss_pred HHHHHhhcccccChHHHHHHHHHhCCChHHHHHHHHHHHH
Q 042546 254 VERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEE 293 (671)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~f~~~~~ 293 (671)
+...+.+.++.++...+..+....+|++..|+.+++++..
T Consensus 186 L~~Il~kEgI~id~eAL~~IA~~S~GdLRdALnLLDQaIa 225 (702)
T PRK14960 186 LGAILEKEQIAADQDAIWQIAESAQGSLRDALSLTDQAIA 225 (702)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 3444556688888888888888888999999998877553
No 453
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=25.21 E-value=8e+02 Score=25.90 Aligned_cols=37 Identities=5% Similarity=0.047 Sum_probs=27.8
Q ss_pred HHHhhcccccChHHHHHHHHHhCCChHHHHHHHHHHH
Q 042546 256 RQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAE 292 (671)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~f~~~~ 292 (671)
..+.+.|+.++...+..++...+|++..|...++.+.
T Consensus 191 ~~~~~eg~~i~~~al~~L~~~s~gdlr~a~~~Lekl~ 227 (451)
T PRK06305 191 LIAKQEGIETSREALLPIARAAQGSLRDAESLYDYVV 227 (451)
T ss_pred HHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 3344467778888888888887888988888887654
No 454
>PRK13342 recombination factor protein RarA; Reviewed
Probab=25.03 E-value=7.9e+02 Score=25.50 Aligned_cols=42 Identities=14% Similarity=-0.016 Sum_probs=23.8
Q ss_pred HHHHHHHHh---cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 042546 412 NSVLKALIS---VGRMGECNKILKAMEEGGFIASSNMKSKIAFRL 453 (671)
Q Consensus 412 ~~li~~~~~---~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~ 453 (671)
..+++++.+ ..+.+.|...+..|.+.|..|....-..++.++
T Consensus 231 ~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~ 275 (413)
T PRK13342 231 YDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIAS 275 (413)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 334444443 367777777777777777655544444444433
No 455
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=24.93 E-value=5.7e+02 Score=28.62 Aligned_cols=78 Identities=8% Similarity=0.013 Sum_probs=48.1
Q ss_pred HHHHhcCCCCCHHHHHHHHHhcCCChHHHHHHHHHHhhcC--CCC----------CCHHHHHHHHHHHHccCcHHHHHHH
Q 042546 119 KQLELSGVVFTHEMVLKVLKNLESSPDEARRFFNWVLEKE--SER----------LSSKTYNLMLRIVGVHGLVQEFWGL 186 (671)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~f~~m~~~~--~~~----------~~~~~~n~li~~~~~~g~~~~a~~l 186 (671)
..+...+..++...+..+.....|++..|+.+++.+.... .+. .+......|+.++.+ ++...++.+
T Consensus 189 ~Il~kEgi~id~eAL~~Ia~~A~GslRdAlnLLDqaia~g~g~It~e~V~~lLG~~d~~~If~LldAL~~-~d~~~al~~ 267 (709)
T PRK08691 189 HVLDSEKIAYEPPALQLLGRAAAGSMRDALSLLDQAIALGSGKVAENDVRQMIGAVDKQYLYELLTGIIN-QDGAALLAK 267 (709)
T ss_pred HHHHHcCCCcCHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCcCHHHHHHHHcccCHHHHHHHHHHHHc-CCHHHHHHH
Confidence 3445566677777666666665789999999888765411 111 122223345555544 777788888
Q ss_pred HHHHHHcCCCC
Q 042546 187 VDVMKKKGYGV 197 (671)
Q Consensus 187 ~~~m~~~g~~p 197 (671)
+++|...|+.+
T Consensus 268 l~~L~~~G~d~ 278 (709)
T PRK08691 268 AQEMAACAVGF 278 (709)
T ss_pred HHHHHHhCCCH
Confidence 88888777643
No 456
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=24.91 E-value=8.5e+02 Score=25.83 Aligned_cols=411 Identities=10% Similarity=-0.049 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHH-HHcCCCCCHHHHHHHHHHHHHcCChhHHHHHH
Q 042546 144 PDEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLVDVM-KKKGYGVASHVRNKMTEKFEKEGLESDLEKLK 222 (671)
Q Consensus 144 ~~~A~~~f~~m~~~~~~~~~~~~~n~li~~~~~~g~~~~a~~l~~~m-~~~g~~p~~~t~~~ll~~~~~~g~~~~~~~~~ 222 (671)
+..-..+|.....+.. .|+..|..-|.-+-+.+.+.+...+|.+| ...+-.||...+.+.=.-=.... .+.++.+.
T Consensus 87 ~~rIv~lyr~at~rf~--~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~n-i~saRalf 163 (568)
T KOG2396|consen 87 PNRIVFLYRRATNRFN--GDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLN-IESARALF 163 (568)
T ss_pred HHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccc-hHHHHHHH
Q ss_pred HHHHcCCCCChHHHHH--------------------------------------------HHHHHHHhcCCChhHHH-HH
Q 042546 223 GIFATGSIDNSIEKVA--------------------------------------------SRICKVVRSDIWGDDVE-RQ 257 (671)
Q Consensus 223 ~~~~~~~~~~~~~~~~--------------------------------------------~~~~~~~~~~~~~~~~~-~~ 257 (671)
.---++.++.+.-+.. ..++............+ +.
T Consensus 164 lrgLR~npdsp~Lw~eyfrmEL~~~~Kl~~rr~~~g~~~~~~~~eie~ge~~~~~~~~s~~~~~~~~k~~e~~~~~~~d~ 243 (568)
T KOG2396|consen 164 LRGLRFNPDSPKLWKEYFRMELMYAEKLRNRREELGLDSSDKDEEIERGELAWINYANSVDIIKGAVKSVELSVAEKFDF 243 (568)
T ss_pred HHHhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhhccchhhhhcchhhcchHHHHHHHH
Q ss_pred HhhcccccChHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHH
Q 042546 258 LRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEME 337 (671)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 337 (671)
+.+.+-.....+.......-.-.-+.|.+.++-.. ..+...+...-.+.--..+.+....+|++..+. -|...
T Consensus 244 ~kel~k~i~d~~~~~~~~np~~~~~laqr~l~i~~-----~tdl~~~~~~~~~~~~~~k~s~~~~v~ee~v~~--l~t~s 316 (568)
T KOG2396|consen 244 LKELQKNIIDDLQSKAPDNPLLWDDLAQRELEILS-----QTDLQHTDNQAKAVEVGSKESRCCAVYEEAVKT--LPTES 316 (568)
T ss_pred HHHHHHHHHHHHhccCCCCCccHHHHHHHHHHHHH-----HhhccchhhhhhchhcchhHHHHHHHHHHHHHH--hhHHH
Q ss_pred HHHHHHHHHH------hCCChHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCCCCHH
Q 042546 338 TCVKVLGRFS------ERNMVKEAVDLYEFAMACK--NKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDA 409 (671)
Q Consensus 338 t~~~li~~~~------~~g~~~~a~~l~~~m~~~g--~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (671)
.|+..|..|. +...+.....+|+...+.+ ..-....|..+.-.++..+ ........+...++..|..
T Consensus 317 m~e~YI~~~lE~~~~~r~~~I~h~~~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~-----~~r~~a~~l~~e~f~~s~k 391 (568)
T KOG2396|consen 317 MWECYITFCLERFTFLRGKRILHTMCVFRKAHELKLLSECLYKQYSVLLLCLNTLN-----EAREVAVKLTTELFRDSGK 391 (568)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHhccc-----hHhHHHHHhhHHHhcchHH
Q ss_pred HHHHHHHHHHhc--CCHHHHHHHHHHHHHCCCCCCHHHHHHHH-HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH-HHHH
Q 042546 410 MLNSVLKALISV--GRMGECNKILKAMEEGGFIASSNMKSKIA-FRLSSAGKKDEANEFMDHMEASGSDVGDKMW-VSLI 485 (671)
Q Consensus 410 ~~~~li~~~~~~--g~~~~A~~~~~~m~~~g~~~~~~~~~~li-~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~-~~li 485 (671)
.|-.=+...... .---.-..+|......-..+-...|++.. ..+.+....+.....+..+. .|+..|+ +.++
T Consensus 392 ~~~~kl~~~~~s~sD~q~~f~~l~n~~r~~~~s~~~~~w~s~~~~dsl~~~~~~~Ii~a~~s~~----~~~~~tl~s~~l 467 (568)
T KOG2396|consen 392 MWQLKLQVLIESKSDFQMLFEELFNHLRKQVCSELLISWASASEGDSLQEDTLDLIISALLSVI----GADSVTLKSKYL 467 (568)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcchhHHHHHHHhhccchhHHHHHHHHHHHHHhc----CCceeehhHHHH
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH---HHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 042546 486 KGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNT---YCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLV 562 (671)
Q Consensus 486 ~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~---~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~ 562 (671)
.-+-+.|-..+|...+..+.. --+|+...|.-+|.. ...|| +..+.+.++.|...+| .|...|--.+.--..
T Consensus 468 ~~~~e~~~~~~ark~y~~l~~--lpp~sl~l~r~miq~e~~~~sc~-l~~~r~~yd~a~~~fg--~d~~lw~~y~~~e~~ 542 (568)
T KOG2396|consen 468 DWAYESGGYKKARKVYKSLQE--LPPFSLDLFRKMIQFEKEQESCN-LANIREYYDRALREFG--ADSDLWMDYMKEELP 542 (568)
T ss_pred HHHHHhcchHHHHHHHHHHHh--CCCccHHHHHHHHHHHhhHhhcC-chHHHHHHHHHHHHhC--CChHHHHHHHHhhcc
Q ss_pred cCCHHHHHHHHHHHHh
Q 042546 563 QRGFKDALSLLCLMKD 578 (671)
Q Consensus 563 ~g~~~~A~~l~~~m~~ 578 (671)
.|..+.+-.++.+..+
T Consensus 543 ~g~~en~~~~~~ra~k 558 (568)
T KOG2396|consen 543 LGRPENCGQIYWRAMK 558 (568)
T ss_pred CCCcccccHHHHHHHH
No 457
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=24.77 E-value=4.9e+02 Score=27.90 Aligned_cols=41 Identities=12% Similarity=0.178 Sum_probs=31.7
Q ss_pred HHHHHHhhcccccChHHHHHHHHHhCCChHHHHHHHHHHHH
Q 042546 253 DVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEE 293 (671)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~f~~~~~ 293 (671)
.+..-+.+.++...+..+..+.+...|.+.+|+.+++++..
T Consensus 186 ~L~~i~~~E~I~~e~~aL~~ia~~a~Gs~RDalslLDq~i~ 226 (515)
T COG2812 186 HLAAILDKEGINIEEDALSLIARAAEGSLRDALSLLDQAIA 226 (515)
T ss_pred HHHHHHHhcCCccCHHHHHHHHHHcCCChhhHHHHHHHHHH
Confidence 34455566777888888888888888888888888888875
No 458
>PRK07452 DNA polymerase III subunit delta; Validated
Probab=24.56 E-value=6.6e+02 Score=24.91 Aligned_cols=97 Identities=10% Similarity=0.127 Sum_probs=57.8
Q ss_pred hHHHHHHhhcccccChHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHH--ccCChHHHHHHHHHHHH
Q 042546 252 DDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLG--REDCIDRFWKVLDEMRS 329 (671)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~--~~g~~~~A~~~~~~m~~ 329 (671)
..+...+.+.|..+++..+..++...++++..+..-++.+.- |+ ..+.+ -.+..+.+..
T Consensus 137 ~~i~~~~~~~g~~i~~~a~~~L~~~~g~dl~~l~~EleKL~l-----------------y~~~~~~~I--t~~~V~~~v~ 197 (326)
T PRK07452 137 QLVERTAQELGVKLTPEAAELLAEAVGNDSRRLYNELEKLAL-----------------YAENSTKPI--SAEEVKALVS 197 (326)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHhCccHHHHHHHHHHHHH-----------------hccCCCCcc--CHHHHHHHhc
Confidence 446677788899999999998888888777766666665542 21 11111 1111111221
Q ss_pred cCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHH
Q 042546 330 KGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVN 372 (671)
Q Consensus 330 ~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ 372 (671)
. . +...|. ++++.. .|+..+|.++++.+...|..|-..
T Consensus 198 ~-~--~~~if~-l~dai~-~~~~~~A~~~l~~L~~~g~~p~~i 235 (326)
T PRK07452 198 N-T--TQNSLQ-LADALL-QGNTGKALALLDDLLDANEPALRI 235 (326)
T ss_pred c-C--cCcHHH-HHHHHH-CCCHHHHHHHHHHHHHCCCcHHHH
Confidence 1 1 223444 555554 478888888888888877766543
No 459
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=24.53 E-value=7.5e+02 Score=25.07 Aligned_cols=74 Identities=12% Similarity=0.188 Sum_probs=46.7
Q ss_pred HhcCCCCCHHHHHHHHHhcCCChHHHHHHHHHHhhcCC-------------CCCCHHHHHHHHHHHHccCcHHHHHHHHH
Q 042546 122 ELSGVVFTHEMVLKVLKNLESSPDEARRFFNWVLEKES-------------ERLSSKTYNLMLRIVGVHGLVQEFWGLVD 188 (671)
Q Consensus 122 ~~~~~~~~~~~~~~~l~~~~~~~~~A~~~f~~m~~~~~-------------~~~~~~~~n~li~~~~~~g~~~~a~~l~~ 188 (671)
...+..++...+..+.....|++..|...++.+....+ ..++...+. ++++. ..|+..+|..+++
T Consensus 181 ~~~g~~i~~~al~~l~~~~~gdlr~~~~~lekl~~y~~~~it~~~v~~~~~~~~~~~if~-l~~ai-~~~~~~~a~~~~~ 258 (367)
T PRK14970 181 VKEGIKFEDDALHIIAQKADGALRDALSIFDRVVTFCGKNITRQAVTENLNILDYDTYIN-VTDLI-LENKIPELLLAFN 258 (367)
T ss_pred HHcCCCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHhCCCCHHHHHH-HHHHH-HcCCHHHHHHHHH
Confidence 45676677777666666667889999888888653111 111111222 34433 3478888888888
Q ss_pred HHHHcCCCC
Q 042546 189 VMKKKGYGV 197 (671)
Q Consensus 189 ~m~~~g~~p 197 (671)
.+...|..|
T Consensus 259 ~l~~~~~~~ 267 (367)
T PRK14970 259 EILRKGFDG 267 (367)
T ss_pred HHHHcCCCH
Confidence 888877655
No 460
>COG4003 Uncharacterized protein conserved in archaea [Function unknown]
Probab=24.36 E-value=3e+02 Score=20.66 Aligned_cols=31 Identities=19% Similarity=0.266 Sum_probs=21.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 042546 413 SVLKALISVGRMGECNKILKAMEEGGFIASSN 444 (671)
Q Consensus 413 ~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~ 444 (671)
++++-+.+|.-.++|+++++.|.++| ..+..
T Consensus 36 tV~D~L~rCdT~EEAlEii~yleKrG-Ei~~E 66 (98)
T COG4003 36 TVIDFLRRCDTEEEALEIINYLEKRG-EITPE 66 (98)
T ss_pred hHHHHHHHhCcHHHHHHHHHHHHHhC-CCCHH
Confidence 35566677788888888888888777 34433
No 461
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=24.14 E-value=9.6e+02 Score=26.19 Aligned_cols=32 Identities=3% Similarity=0.012 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHHcCC
Q 042546 301 ESSYNAMASVLGREDCIDRFWKVLDEMRSKGY 332 (671)
Q Consensus 301 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 332 (671)
...|..++++....|-.....-+.+.+....+
T Consensus 340 ~~~r~~~~Dal~~~GT~~a~~~i~~~i~~~~~ 371 (574)
T smart00638 340 KKARRIFLDAVAQAGTPPALKFIKQWIKNKKI 371 (574)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCC
Confidence 56777777777777766655555555555444
No 462
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=24.09 E-value=3.4e+02 Score=20.95 Aligned_cols=52 Identities=15% Similarity=0.107 Sum_probs=27.9
Q ss_pred HhcCCHHHHHHHHHH----HHHCCCCCC--H--HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 042546 419 ISVGRMGECNKILKA----MEEGGFIAS--S--NMKSKIAFRLSSAGKKDEANEFMDHME 470 (671)
Q Consensus 419 ~~~g~~~~A~~~~~~----m~~~g~~~~--~--~~~~~li~~~~~~g~~~~A~~~~~~m~ 470 (671)
.+.|++..|.+-+.+ ....+.... . ...-.+.......|+.++|.+.+++..
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi 68 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAI 68 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 456777777544443 333332221 1 122234445566788888887777764
No 463
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=23.76 E-value=1.6e+02 Score=23.74 Aligned_cols=48 Identities=17% Similarity=0.158 Sum_probs=38.6
Q ss_pred HHHHHHHccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChh
Q 042546 169 LMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRNKMTEKFEKEGLES 216 (671)
Q Consensus 169 ~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~ 216 (671)
.++..+...+..-.|.++++.+.+.+..++..|.-..|+.+...|...
T Consensus 5 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli~ 52 (116)
T cd07153 5 AILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLVR 52 (116)
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEE
Confidence 356666666677778899999999888889999989999999888544
No 464
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=23.68 E-value=1.1e+03 Score=26.49 Aligned_cols=34 Identities=9% Similarity=0.108 Sum_probs=26.1
Q ss_pred hhcccccChHHHHHHHHHhCCChHHHHHHHHHHH
Q 042546 259 RDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAE 292 (671)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~f~~~~ 292 (671)
.+.++.++...+..+.+...|++.+|+.++++..
T Consensus 197 ~~Egi~~d~eAL~~IA~~A~Gs~RdALsLLdQai 230 (700)
T PRK12323 197 GEEGIAHEVNALRLLAQAAQGSMRDALSLTDQAI 230 (700)
T ss_pred HHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 3457777777777777777899999999888644
No 465
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=23.39 E-value=3.4e+02 Score=25.73 Aligned_cols=57 Identities=18% Similarity=0.047 Sum_probs=29.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHc---CC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 042546 484 LIKGHCVAGDLDKAADCFQKMVEK---EG-TSHAGYAIDLLVNTYCSKNRAIDACKFVHNC 540 (671)
Q Consensus 484 li~~~~~~g~~~~a~~~~~~m~~~---~g-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 540 (671)
+-.-|.+.|++++|.++|+.+... .| ..+...+...+..++.+.|+.++...+--++
T Consensus 184 ~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 184 MAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 344455566666666666655320 11 1233344455556666666666665554443
No 466
>COG1466 HolA DNA polymerase III, delta subunit [DNA replication, recombination, and repair]
Probab=23.11 E-value=6.5e+02 Score=25.19 Aligned_cols=41 Identities=7% Similarity=0.218 Sum_probs=32.7
Q ss_pred hHHHHHHhhcccccChHHHHHHHHHhCCChHHHHHHHHHHH
Q 042546 252 DDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAE 292 (671)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~f~~~~ 292 (671)
..+...+.+.|+.+++..+..++...+|+...+..-++.+.
T Consensus 147 ~~i~~~~~~~~l~i~~~a~~~L~~~~~~nl~~i~~Ei~KL~ 187 (334)
T COG1466 147 QWIKKRAKELGLKIDQEAIQLLLEALGGNLLAIAQEIEKLA 187 (334)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 34567777888999999999999888888888777777664
No 467
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=23.03 E-value=8.5e+02 Score=26.78 Aligned_cols=37 Identities=3% Similarity=0.007 Sum_probs=27.7
Q ss_pred HHHhhcccccChHHHHHHHHHhCCChHHHHHHHHHHH
Q 042546 256 RQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAE 292 (671)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~f~~~~ 292 (671)
....+.|+.++...+..+....+|++..|...++++.
T Consensus 190 ~~a~~egl~i~~eal~~La~~s~Gdlr~al~~LekL~ 226 (585)
T PRK14950 190 KIAAAEGINLEPGALEAIARAATGSMRDAENLLQQLA 226 (585)
T ss_pred HHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 3344557778888888877777888888888888764
No 468
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=22.86 E-value=1e+03 Score=26.00 Aligned_cols=40 Identities=10% Similarity=0.208 Sum_probs=29.5
Q ss_pred HHHHHhhcccccChHHHHHHHHHhCCChHHHHHHHHHHHH
Q 042546 254 VERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEE 293 (671)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~f~~~~~ 293 (671)
+...+.+.|+.+++..+..+....+|++..|+..+++...
T Consensus 187 L~~i~~~egi~i~~~al~~ia~~s~G~~R~al~~Ldq~~~ 226 (559)
T PRK05563 187 LKYILDKEGIEYEDEALRLIARAAEGGMRDALSILDQAIS 226 (559)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 3344456677888888888787778899999888886643
No 469
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=22.37 E-value=1.7e+02 Score=30.41 Aligned_cols=54 Identities=17% Similarity=0.034 Sum_probs=30.9
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHH-HHHHhcCCHHHHHHHHHHHHh
Q 042546 522 NTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELI-KNLLVQRGFKDALSLLCLMKD 578 (671)
Q Consensus 522 ~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li-~~~~~~g~~~~A~~l~~~m~~ 578 (671)
+.+.+.+.++.|..++.+..+ +.||...|-+.= .++.+.+++..|+.=+.+..+
T Consensus 12 n~~l~~~~fd~avdlysKaI~---ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie 66 (476)
T KOG0376|consen 12 NEALKDKVFDVAVDLYSKAIE---LDPNCAIYFANRALAHLKVESFGGALHDALKAIE 66 (476)
T ss_pred hhhcccchHHHHHHHHHHHHh---cCCcceeeechhhhhheeechhhhHHHHHHhhhh
Confidence 344455667777777777664 456555443332 556666666666654444443
No 470
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=22.36 E-value=5.9e+02 Score=23.09 Aligned_cols=55 Identities=7% Similarity=0.054 Sum_probs=30.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCC--------------CCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 042546 448 KIAFRLSSAGKKDEANEFMDHMEASG--------------SDVGDKMWVSLIKGHCVAGDLDKAADCFQ 502 (671)
Q Consensus 448 ~li~~~~~~g~~~~A~~~~~~m~~~g--------------~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 502 (671)
+++..|-+.-++.++.++++.|.+.. ..+.-...|.....|.+.|.+|.|..+++
T Consensus 137 S~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLr 205 (233)
T PF14669_consen 137 SLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLR 205 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHh
Confidence 34445555555555555555554311 12333445556666667777777766665
No 471
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=21.80 E-value=4.2e+02 Score=21.14 Aligned_cols=63 Identities=14% Similarity=0.102 Sum_probs=34.1
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCC
Q 042546 340 VKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGN 404 (671)
Q Consensus 340 ~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (671)
..++..|...|+.++|..-+.++... .-.......++......+..+.+.+..++..+...+.
T Consensus 6 ~~~l~ey~~~~d~~ea~~~l~el~~~--~~~~~vv~~~l~~~le~~~~~r~~~~~Ll~~L~~~~~ 68 (113)
T PF02847_consen 6 FSILMEYFSSGDVDEAVECLKELKLP--SQHHEVVKVILECALEEKKSYREYYSKLLSHLCKRKL 68 (113)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHHTT-G--GGHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHhcCCCHHHHHHHHHHhCCC--ccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhcCC
Confidence 45666777889999999998886421 1112233444444444444444555555555554443
No 472
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=21.77 E-value=1e+03 Score=25.60 Aligned_cols=46 Identities=7% Similarity=0.076 Sum_probs=27.5
Q ss_pred HHHHHHHHHHH-HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 042546 459 KDEANEFMDHM-EASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVE 506 (671)
Q Consensus 459 ~~~A~~~~~~m-~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 506 (671)
.++..+.+... .+.|+..+......++.. ..|++..|...++++..
T Consensus 189 ~~el~~~L~~i~~~egi~ie~eAL~~Ia~~--s~GslR~al~~Ldkai~ 235 (507)
T PRK06645 189 FEEIFKLLEYITKQENLKTDIEALRIIAYK--SEGSARDAVSILDQAAS 235 (507)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHH--cCCCHHHHHHHHHHHHH
Confidence 34444444433 455666666666655543 45778888888777644
No 473
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=21.63 E-value=4.7e+02 Score=21.64 Aligned_cols=22 Identities=5% Similarity=0.028 Sum_probs=15.4
Q ss_pred CHHHHHHHHHHHHHcCChhHHH
Q 042546 198 ASHVRNKMTEKFEKEGLESDLE 219 (671)
Q Consensus 198 ~~~t~~~ll~~~~~~g~~~~~~ 219 (671)
|...+..|-.++...|+++++.
T Consensus 54 DA~chA~Ls~A~~~Lgry~e~L 75 (144)
T PF12968_consen 54 DAFCHAGLSGALAGLGRYDECL 75 (144)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHHHHHHHhhccHHHHH
Confidence 4566777778888888877765
No 474
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=21.54 E-value=2.2e+02 Score=22.97 Aligned_cols=46 Identities=22% Similarity=0.285 Sum_probs=26.9
Q ss_pred HHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCh
Q 042546 307 MASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMV 352 (671)
Q Consensus 307 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~ 352 (671)
++..+...+..-.|.++++.+.+.+..++..|..-.++.+...|-+
T Consensus 6 Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli 51 (116)
T cd07153 6 ILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLV 51 (116)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCE
Confidence 3444444455556666777776666555666666666666665543
No 475
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=21.39 E-value=8.9e+02 Score=24.80 Aligned_cols=55 Identities=13% Similarity=0.169 Sum_probs=41.0
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHH--hcCCHHHHHHHHHHHHHC
Q 042546 417 ALISVGRMGECNKILKAMEEGGFIASSN--MKSKIAFRLS--SAGKKDEANEFMDHMEAS 472 (671)
Q Consensus 417 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~--~~~~li~~~~--~~g~~~~A~~~~~~m~~~ 472 (671)
.+...+++..|.++|+++.+. ++++.. .+..+..+|. ...++++|.+.++.....
T Consensus 140 ~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 140 ELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 345789999999999999987 555554 4555556554 477889999999987654
No 476
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=21.26 E-value=3.9e+02 Score=23.94 Aligned_cols=75 Identities=9% Similarity=0.123 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcC----C-------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 042546 425 GECNKILKAMEEGGFIASS-NMKSKIAFRLSSAG----K-------KDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAG 492 (671)
Q Consensus 425 ~~A~~~~~~m~~~g~~~~~-~~~~~li~~~~~~g----~-------~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 492 (671)
++|..-|++.... .|+- .++..+-.+|...+ + +++|.+.|+...+. .|+..+|+.-+....
T Consensus 52 edAisK~eeAL~I--~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~--~P~ne~Y~ksLe~~~--- 124 (186)
T PF06552_consen 52 EDAISKFEEALKI--NPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDE--DPNNELYRKSLEMAA--- 124 (186)
T ss_dssp HHHHHHHHHHHHH---TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH---TT-HHHHHHHHHHH---
T ss_pred HHHHHHHHHHHhc--CCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhc--CCCcHHHHHHHHHHH---
Confidence 3444444444443 3543 45555555555433 2 45555666665554 789899988887753
Q ss_pred CHHHHHHHHHHHHHcCCC
Q 042546 493 DLDKAADCFQKMVEKEGT 510 (671)
Q Consensus 493 ~~~~a~~~~~~m~~~~g~ 510 (671)
+|-+++.++.+ .+.
T Consensus 125 ---kap~lh~e~~~-~~~ 138 (186)
T PF06552_consen 125 ---KAPELHMEIHK-QGL 138 (186)
T ss_dssp ---THHHHHHHHHH-SSS
T ss_pred ---hhHHHHHHHHH-HHh
Confidence 45667777766 444
No 477
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=20.88 E-value=7.3e+02 Score=26.85 Aligned_cols=138 Identities=14% Similarity=0.055 Sum_probs=73.8
Q ss_pred CCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 042546 367 NKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMK 446 (671)
Q Consensus 367 ~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~ 446 (671)
-.|+..+..+++.-+...--.+.+.+..++..|.. ...|--.+.|..---+--.|+...|...+.......-.-..+..
T Consensus 567 ~~~~~~~~k~~~~r~~~~~i~e~e~~~~~~~~~~~-~~~p~w~~ln~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~ 645 (886)
T KOG4507|consen 567 KMPDDHARKILLSRINNYTIPEEEIGSFLFHAINK-PNAPIWLILNEAGLYWRAVGNSTFAIACLQRALNLAPLQQDVPL 645 (886)
T ss_pred cCchHHHHHHHHHHHhcccCcHHHHHHHHHHHhcC-CCCCeEEEeecccceeeecCCcHHHHHHHHHHhccChhhhcccH
Confidence 34666666666655554444444444444444432 22222222222111122356666676666554432111122333
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 042546 447 SKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVE 506 (671)
Q Consensus 447 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 506 (671)
-.|.....+.|...+|..++.+..... ...+.++-.+-.+|.-..+++.|++.|+...+
T Consensus 646 v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~ 704 (886)
T KOG4507|consen 646 VNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGALEAFRQALK 704 (886)
T ss_pred HHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHHHHHHHHHh
Confidence 445555556677777777777665543 33455666777777777888888888877765
No 478
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=20.85 E-value=1e+03 Score=25.29 Aligned_cols=37 Identities=8% Similarity=0.176 Sum_probs=27.3
Q ss_pred HHHhhcccccChHHHHHHHHHhCCChHHHHHHHHHHH
Q 042546 256 RQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAE 292 (671)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~f~~~~ 292 (671)
......++.+++..+..+.....|++..|+..++.+.
T Consensus 187 ~i~~~egi~i~~eal~~Ia~~s~GdlR~aln~Le~l~ 223 (472)
T PRK14962 187 EVAEAEGIEIDREALSFIAKRASGGLRDALTMLEQVW 223 (472)
T ss_pred HHHHHcCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 3344557778888888888777788888888887654
No 479
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=20.73 E-value=1e+03 Score=25.34 Aligned_cols=39 Identities=8% Similarity=0.179 Sum_probs=27.5
Q ss_pred HHHHHhhcccccChHHHHHHHHHhCCChHHHHHHHHHHH
Q 042546 254 VERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAE 292 (671)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~f~~~~ 292 (671)
+...+.+.|+.+++..+..+.....|++..|...++.+.
T Consensus 187 L~~i~k~egi~id~~al~~La~~s~G~lr~al~~Ldkl~ 225 (486)
T PRK14953 187 LKRICNEEKIEYEEKALDLLAQASEGGMRDAASLLDQAS 225 (486)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 334445567777777777777777788888888877654
No 480
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=20.23 E-value=9.4e+02 Score=24.60 Aligned_cols=110 Identities=13% Similarity=0.099 Sum_probs=52.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 042546 414 VLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGD 493 (671)
Q Consensus 414 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 493 (671)
|...+-.+|++++|..++.+.. +.||.++ ..-+...-++++|+ .|.-.++
T Consensus 137 L~~ike~~Gdi~~Aa~il~el~-------VETygsm-------~~~ekV~fiLEQmr----------------KOG~~~D 186 (439)
T KOG1498|consen 137 LAKIKEEQGDIAEAADILCELQ-------VETYGSM-------EKSEKVAFILEQMR----------------LCLLRLD 186 (439)
T ss_pred HHHHHHHcCCHHHHHHHHHhcc-------hhhhhhh-------HHHHHHHHHHHHHH----------------HHHHhhh
Confidence 4455566777777777766543 2344332 12233333334433 2334444
Q ss_pred HHHHHHHHHHHHHcCCCCCCH-----HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHH
Q 042546 494 LDKAADCFQKMVEKEGTSHAG-----YAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTY 553 (671)
Q Consensus 494 ~~~a~~~~~~m~~~~g~~p~~-----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~ 553 (671)
+-.|--+-+++..+.--.||. .-|+.++....+.+.+=++.+.++.+..-..++-|..-|
T Consensus 187 ~vra~i~skKI~~K~F~~~~~~~lKlkyY~lmI~l~lh~~~Yl~v~~~Yraiy~t~~vk~d~~kw 251 (439)
T KOG1498|consen 187 YVRAQIISKKINKKFFEKPDVQELKLKYYELMIRLGLHDRAYLNVCRSYRAIYDTGNVKEDPEKW 251 (439)
T ss_pred HHHHHHHHHHhhHHhcCCccHHHHHHHHHHHHHHhcccccchhhHHHHHHHHhcccccccChhhh
Confidence 444444444443322222332 235666666656666666666666655433333333333
No 481
>COG2987 HutU Urocanate hydratase [Amino acid transport and metabolism]
Probab=20.09 E-value=85 Score=32.03 Aligned_cols=42 Identities=19% Similarity=0.103 Sum_probs=30.3
Q ss_pred cCCHHHHHHHHHhchH-----hhhccHHHHHHHHhhhcCCCCCCCcC
Q 042546 629 ARRHSEAQDLLSKCPR-----YVRNHADVLNLLYSKKSGGDSAPAVT 670 (671)
Q Consensus 629 ~g~~~~A~~~~~~m~~-----~~~~~~~~~~l~~~m~~~g~~p~~~t 670 (671)
....+||+++.++-.. .++..-.+-+++.++.+.|+.||.+|
T Consensus 216 a~~ldeAl~~a~~~~~ag~p~SIgl~GNaaei~~~l~~r~~~pD~vt 262 (561)
T COG2987 216 AETLDEALALAEEATAAGEPISIGLLGNAAEILPELLRRGIRPDLVT 262 (561)
T ss_pred cCCHHHHHHHHHHHHhcCCceEEEEeccHHHHHHHHHHcCCCCceec
Confidence 4567777777766443 23445567788888999999999887
Done!