Query 042546
Match_columns 671
No_of_seqs 705 out of 3866
Neff 10.8
Searched_HMMs 29240
Date Mon Mar 25 12:22:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042546.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042546hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 5.9E-38 2E-42 344.2 39.3 452 141-660 97-594 (597)
2 2xpi_A Anaphase-promoting comp 100.0 1.4E-33 4.7E-38 309.4 38.8 433 141-662 66-579 (597)
3 4g26_A Pentatricopeptide repea 100.0 1.5E-31 5.2E-36 281.0 26.1 205 284-527 9-223 (501)
4 4g26_A Pentatricopeptide repea 100.0 8.1E-32 2.8E-36 283.1 23.5 216 318-563 7-223 (501)
5 1w3b_A UDP-N-acetylglucosamine 99.9 4.9E-22 1.7E-26 205.0 49.4 371 141-630 12-387 (388)
6 1w3b_A UDP-N-acetylglucosamine 99.9 4.2E-22 1.4E-26 205.5 46.5 327 279-653 47-376 (388)
7 2gw1_A Mitochondrial precursor 99.9 1.1E-19 3.8E-24 194.7 39.5 240 408-654 237-487 (514)
8 2y4t_A DNAJ homolog subfamily 99.9 4.3E-19 1.5E-23 186.8 42.1 309 162-588 24-365 (450)
9 2y4t_A DNAJ homolog subfamily 99.9 7.9E-19 2.7E-23 184.8 37.7 308 298-652 23-365 (450)
10 2gw1_A Mitochondrial precursor 99.8 4.7E-17 1.6E-21 174.2 43.1 398 141-588 19-485 (514)
11 3fp2_A TPR repeat-containing p 99.8 4.7E-17 1.6E-21 175.4 40.6 418 141-648 38-494 (537)
12 3spa_A Mtrpol, DNA-directed RN 99.8 4E-20 1.4E-24 198.8 7.9 151 407-564 126-286 (1134)
13 3ieg_A DNAJ homolog subfamily 99.8 6.9E-16 2.3E-20 156.6 38.7 310 300-656 2-346 (359)
14 3fp2_A TPR repeat-containing p 99.8 1.6E-15 5.6E-20 163.3 42.6 388 141-587 72-497 (537)
15 3spa_A Mtrpol, DNA-directed RN 99.8 9.6E-19 3.3E-23 188.2 11.5 138 440-584 124-265 (1134)
16 3ieg_A DNAJ homolog subfamily 99.8 1.7E-14 5.9E-19 146.1 41.6 207 413-628 125-352 (359)
17 1b89_A Protein (clathrin heavy 99.8 1.1E-16 3.8E-21 160.1 23.1 344 141-641 16-368 (449)
18 3hym_B Cell division cycle pro 99.7 3.5E-15 1.2E-19 149.5 31.1 289 298-631 19-320 (330)
19 3hym_B Cell division cycle pro 99.7 7.7E-15 2.6E-19 147.0 33.2 240 411-656 59-310 (330)
20 1b89_A Protein (clathrin heavy 99.7 9.5E-16 3.2E-20 153.3 23.0 379 57-641 14-413 (449)
21 2ooe_A Cleavage stimulation fa 99.7 6.3E-13 2.2E-17 142.6 44.8 215 425-647 255-494 (530)
22 1fch_A Peroxisomal targeting s 99.7 3.8E-15 1.3E-19 151.9 25.1 287 314-644 38-358 (368)
23 2ooe_A Cleavage stimulation fa 99.7 1.5E-12 5E-17 139.7 45.7 399 141-612 25-493 (530)
24 2xm6_A Protein corresponding t 99.7 2.3E-11 7.8E-16 129.1 52.5 307 279-612 93-433 (490)
25 1fch_A Peroxisomal targeting s 99.7 3.4E-14 1.2E-18 144.8 27.1 267 280-575 79-355 (368)
26 2xm6_A Protein corresponding t 99.6 1.2E-11 4E-16 131.3 45.6 346 141-582 56-435 (490)
27 4eqf_A PEX5-related protein; a 99.6 4.1E-14 1.4E-18 144.1 25.4 265 335-644 64-355 (365)
28 4eqf_A PEX5-related protein; a 99.6 9.3E-14 3.2E-18 141.5 26.8 160 412-574 181-351 (365)
29 3mkr_A Coatomer subunit epsilo 99.6 1.5E-13 5.1E-18 134.6 26.8 270 279-605 13-288 (291)
30 1xi4_A Clathrin heavy chain; a 99.6 4.9E-11 1.7E-15 133.1 47.8 447 128-641 951-1441(1630)
31 3cv0_A Peroxisome targeting si 99.6 2.1E-13 7.1E-18 136.3 26.8 263 336-644 21-314 (327)
32 3mkr_A Coatomer subunit epsilo 99.6 1.9E-13 6.7E-18 133.7 25.5 229 412-656 38-275 (291)
33 3cv0_A Peroxisome targeting si 99.6 6.1E-13 2.1E-17 132.9 28.4 263 278-576 34-312 (327)
34 4g1t_A Interferon-induced prot 99.6 1.2E-11 4.3E-16 130.5 37.8 381 160-652 47-466 (472)
35 1xi4_A Clathrin heavy chain; a 99.6 2.7E-10 9.3E-15 127.3 48.0 413 162-640 951-1379(1630)
36 3uq3_A Heat shock protein STI1 99.5 2.7E-12 9.2E-17 123.2 25.0 233 409-657 6-254 (258)
37 3uq3_A Heat shock protein STI1 99.5 1.9E-11 6.5E-16 117.2 25.1 227 301-578 5-235 (258)
38 1ouv_A Conserved hypothetical 99.4 3.5E-10 1.2E-14 109.6 32.1 238 407-662 5-266 (273)
39 2ho1_A Type 4 fimbrial biogene 99.4 5.2E-11 1.8E-15 113.9 25.6 208 409-653 38-246 (252)
40 2ho1_A Type 4 fimbrial biogene 99.4 1.2E-10 4E-15 111.4 27.3 208 371-588 37-245 (252)
41 2vq2_A PILW, putative fimbrial 99.4 2E-10 6.9E-15 107.4 28.1 198 409-611 9-211 (225)
42 2pl2_A Hypothetical conserved 99.4 4.5E-11 1.5E-15 111.4 23.3 198 334-576 3-211 (217)
43 1xnf_A Lipoprotein NLPI; TPR, 99.4 2.5E-11 8.5E-16 117.8 22.0 185 410-605 79-269 (275)
44 2vq2_A PILW, putative fimbrial 99.4 9E-11 3.1E-15 109.8 24.8 210 441-656 6-222 (225)
45 2pl2_A Hypothetical conserved 99.4 3.6E-11 1.2E-15 112.1 21.6 195 442-643 4-212 (217)
46 1xnf_A Lipoprotein NLPI; TPR, 99.4 2.7E-11 9.1E-16 117.5 21.5 220 409-639 44-269 (275)
47 4g1t_A Interferon-induced prot 99.4 2.9E-09 1E-13 112.1 38.6 364 299-670 49-468 (472)
48 3u4t_A TPR repeat-containing p 99.4 7.6E-11 2.6E-15 114.2 24.1 246 411-663 6-268 (272)
49 2q7f_A YRRB protein; TPR, prot 99.4 4E-11 1.4E-15 113.9 20.9 215 407-659 22-236 (243)
50 3u4t_A TPR repeat-containing p 99.4 2E-10 6.7E-15 111.2 25.2 244 303-588 5-257 (272)
51 3e4b_A ALGK; tetratricopeptide 99.4 6E-11 2E-15 123.9 22.4 219 410-643 178-419 (452)
52 4e6h_A MRNA 3'-END-processing 99.3 1.8E-08 6.2E-13 108.9 41.6 219 426-651 327-576 (679)
53 2q7f_A YRRB protein; TPR, prot 99.3 7.1E-11 2.4E-15 112.1 20.5 208 371-589 23-230 (243)
54 1ouv_A Conserved hypothetical 99.3 1.6E-09 5.6E-14 104.9 30.0 226 335-614 5-254 (273)
55 3nf1_A KLC 1, kinesin light ch 99.3 4.6E-11 1.6E-15 118.1 15.8 237 408-644 27-306 (311)
56 2h6f_A Protein farnesyltransfe 99.3 1.2E-09 4.1E-14 110.5 25.7 225 409-642 98-344 (382)
57 3sf4_A G-protein-signaling mod 99.3 4.1E-10 1.4E-14 115.9 22.5 302 298-633 6-364 (406)
58 2h6f_A Protein farnesyltransfe 99.2 2.4E-09 8.2E-14 108.3 25.2 247 336-629 97-366 (382)
59 2ond_A Cleavage stimulation fa 99.2 9.4E-09 3.2E-13 101.4 28.8 218 282-543 33-270 (308)
60 2ond_A Cleavage stimulation fa 99.2 1.6E-08 5.3E-13 99.8 29.8 215 425-647 33-272 (308)
61 3e4b_A ALGK; tetratricopeptide 99.2 3.5E-09 1.2E-13 110.5 26.3 338 279-644 17-386 (452)
62 4a1s_A PINS, partner of inscut 99.2 1.1E-09 3.9E-14 113.0 21.6 133 445-577 225-370 (411)
63 3nf1_A KLC 1, kinesin light ch 99.2 1.7E-10 5.7E-15 114.0 14.6 247 299-578 25-306 (311)
64 4a1s_A PINS, partner of inscut 99.2 4.5E-10 1.5E-14 116.1 17.8 274 337-644 49-371 (411)
65 4abn_A Tetratricopeptide repea 99.2 2.4E-09 8.3E-14 112.5 23.3 211 424-643 84-319 (474)
66 3ro2_A PINS homolog, G-protein 99.2 1.7E-09 5.7E-14 107.9 20.5 267 278-578 18-331 (338)
67 3ro2_A PINS homolog, G-protein 99.2 1.6E-09 5.5E-14 108.0 20.0 273 338-644 7-331 (338)
68 3sf4_A G-protein-signaling mod 99.2 1.4E-09 4.6E-14 112.0 19.9 266 279-578 23-335 (406)
69 3vtx_A MAMA; tetratricopeptide 99.2 1.3E-08 4.6E-13 91.7 24.2 167 407-579 4-170 (184)
70 4e6h_A MRNA 3'-END-processing 99.1 3.9E-06 1.4E-10 90.7 45.8 213 394-613 330-572 (679)
71 3vtx_A MAMA; tetratricopeptide 99.1 2E-08 6.9E-13 90.5 23.2 166 300-506 4-169 (184)
72 4abn_A Tetratricopeptide repea 99.1 5E-09 1.7E-13 110.0 21.2 217 279-540 82-318 (474)
73 3ulq_A Response regulator aspa 99.1 5.2E-09 1.8E-13 107.0 20.7 230 414-644 109-367 (383)
74 3as5_A MAMA; tetratricopeptide 99.1 2E-08 6.9E-13 90.2 21.1 163 410-578 10-172 (186)
75 3edt_B KLC 2, kinesin light ch 99.0 3.6E-09 1.2E-13 102.6 15.5 223 420-643 13-279 (283)
76 3ulq_A Response regulator aspa 99.0 2.7E-08 9.3E-13 101.6 22.5 295 278-610 25-367 (383)
77 1hz4_A MALT regulatory protein 99.0 3.6E-07 1.2E-11 92.8 29.2 95 411-505 96-201 (373)
78 3as5_A MAMA; tetratricopeptide 99.0 7.2E-08 2.5E-12 86.5 21.1 166 336-543 8-173 (186)
79 3q15_A PSP28, response regulat 99.0 4.7E-08 1.6E-12 99.5 22.1 230 414-644 107-364 (378)
80 4i17_A Hypothetical protein; T 98.9 7.9E-08 2.7E-12 90.0 20.7 212 440-660 4-224 (228)
81 4i17_A Hypothetical protein; T 98.9 3.9E-07 1.3E-11 85.2 25.0 208 407-624 6-222 (228)
82 3q15_A PSP28, response regulat 98.9 1.3E-06 4.4E-11 88.8 29.7 227 278-542 114-364 (378)
83 1hz4_A MALT regulatory protein 98.9 1.5E-06 5.2E-11 88.1 30.0 267 277-578 26-321 (373)
84 3mv2_B Coatomer subunit epsilo 98.9 3.6E-07 1.2E-11 87.6 22.4 175 462-645 85-282 (310)
85 3edt_B KLC 2, kinesin light ch 98.9 3.7E-08 1.3E-12 95.4 16.0 212 335-578 42-280 (283)
86 4gyw_A UDP-N-acetylglucosamine 98.8 2.1E-07 7.1E-12 101.9 21.7 163 408-578 9-173 (723)
87 4gyw_A UDP-N-acetylglucosamine 98.8 2.4E-07 8.1E-12 101.5 21.5 167 298-506 6-173 (723)
88 2fo7_A Synthetic consensus TPR 98.8 3.4E-07 1.2E-11 77.0 18.1 128 411-542 4-131 (136)
89 3mv2_B Coatomer subunit epsilo 98.8 2.5E-06 8.4E-11 81.8 24.3 173 407-588 99-289 (310)
90 2fo7_A Synthetic consensus TPR 98.8 5.9E-07 2E-11 75.5 18.3 130 445-579 3-132 (136)
91 1qqe_A Vesicular transport pro 98.7 2E-06 6.9E-11 83.8 22.1 164 480-643 79-267 (292)
92 2uy1_A Cleavage stimulation fa 98.6 0.00012 4E-09 76.7 34.7 202 425-645 196-413 (493)
93 1qqe_A Vesicular transport pro 98.6 1.2E-06 4.2E-11 85.4 18.4 199 411-611 40-269 (292)
94 3qky_A Outer membrane assembly 98.6 3.4E-06 1.2E-10 80.6 21.2 99 407-506 14-125 (261)
95 3qky_A Outer membrane assembly 98.6 2.5E-06 8.5E-11 81.6 20.0 190 440-648 12-227 (261)
96 3qou_A Protein YBBN; thioredox 98.5 4.4E-06 1.5E-10 81.1 18.4 167 406-577 115-282 (287)
97 2yhc_A BAMD, UPF0169 lipoprote 98.5 1E-05 3.5E-10 75.3 20.1 185 442-644 3-212 (225)
98 2yhc_A BAMD, UPF0169 lipoprote 98.5 2.7E-05 9.1E-10 72.4 21.7 98 409-506 5-124 (225)
99 3rjv_A Putative SEL1 repeat pr 98.4 2E-05 7E-10 72.4 20.3 105 426-541 4-116 (212)
100 3urz_A Uncharacterized protein 98.4 1.3E-05 4.3E-10 73.6 18.5 187 338-554 6-194 (208)
101 2r5s_A Uncharacterized protein 98.4 3.5E-06 1.2E-10 75.0 13.5 161 411-577 9-171 (176)
102 3urz_A Uncharacterized protein 98.4 1.7E-05 5.7E-10 72.8 17.8 165 309-521 12-197 (208)
103 2uy1_A Cleavage stimulation fa 98.4 0.00066 2.3E-08 71.0 31.7 368 142-577 28-411 (493)
104 2vsy_A XCC0866; transferase, g 98.4 1.2E-05 3.9E-10 86.7 18.8 130 409-542 24-156 (568)
105 2ifu_A Gamma-SNAP; membrane fu 98.4 5.1E-05 1.8E-09 74.3 21.8 231 279-571 5-253 (307)
106 3rjv_A Putative SEL1 repeat pr 98.3 6.4E-05 2.2E-09 69.1 20.8 126 408-541 18-156 (212)
107 3dra_A Protein farnesyltransfe 98.3 0.00039 1.3E-08 67.2 26.8 218 419-644 44-286 (306)
108 2pzi_A Probable serine/threoni 98.3 5.3E-06 1.8E-10 91.1 15.2 171 278-493 404-583 (681)
109 3u3w_A Transcriptional activat 98.3 0.00023 8E-09 69.0 25.3 165 413-577 80-264 (293)
110 2pzi_A Probable serine/threoni 98.3 6.5E-06 2.2E-10 90.4 15.6 152 419-577 402-561 (681)
111 2ifu_A Gamma-SNAP; membrane fu 98.3 6.5E-05 2.2E-09 73.6 21.1 208 449-660 42-275 (307)
112 3qou_A Protein YBBN; thioredox 98.3 1.6E-05 5.6E-10 77.0 16.2 164 300-504 116-281 (287)
113 1a17_A Serine/threonine protei 98.3 3.2E-05 1.1E-09 67.6 16.6 127 410-540 15-143 (166)
114 2vsy_A XCC0866; transferase, g 98.3 2.7E-05 9.1E-10 83.8 19.2 154 278-473 2-158 (568)
115 3u3w_A Transcriptional activat 98.3 0.00015 5E-09 70.5 22.8 160 485-644 82-265 (293)
116 1hh8_A P67PHOX, NCF-2, neutrop 98.3 4.4E-05 1.5E-09 70.0 18.1 126 411-542 9-149 (213)
117 2qfc_A PLCR protein; TPR, HTH, 98.3 6.4E-05 2.2E-09 73.0 19.7 167 411-577 78-264 (293)
118 3dra_A Protein farnesyltransfe 98.2 0.00069 2.3E-08 65.5 26.3 219 280-542 48-286 (306)
119 2qfc_A PLCR protein; TPR, HTH, 98.2 0.00015 5.2E-09 70.4 22.1 93 411-503 158-262 (293)
120 2r5s_A Uncharacterized protein 98.2 1.6E-05 5.5E-10 70.6 13.9 162 304-505 9-171 (176)
121 1a17_A Serine/threonine protei 98.2 4.7E-05 1.6E-09 66.5 16.3 129 444-577 14-144 (166)
122 1na0_A Designed protein CTPR3; 98.2 6.6E-05 2.2E-09 61.6 16.1 95 410-506 11-105 (125)
123 1hh8_A P67PHOX, NCF-2, neutrop 98.2 6.9E-05 2.4E-09 68.7 17.7 128 303-473 8-151 (213)
124 3gw4_A Uncharacterized protein 98.2 3E-05 1E-09 70.4 14.6 158 419-577 3-174 (203)
125 4ga2_A E3 SUMO-protein ligase 98.2 1.1E-05 3.7E-10 69.5 10.5 139 418-564 7-148 (150)
126 4ga2_A E3 SUMO-protein ligase 98.1 8.7E-06 3E-10 70.2 9.6 135 489-630 8-148 (150)
127 1na0_A Designed protein CTPR3; 98.1 0.00016 5.5E-09 59.2 16.7 98 443-543 9-106 (125)
128 2c2l_A CHIP, carboxy terminus 98.1 5E-05 1.7E-09 73.3 14.4 95 444-541 5-99 (281)
129 4gco_A Protein STI-1; structur 98.1 7.1E-05 2.4E-09 62.1 13.2 103 553-657 16-122 (126)
130 2vyi_A SGTA protein; chaperone 98.0 0.00013 4.6E-09 60.3 14.8 115 410-528 14-128 (131)
131 4gco_A Protein STI-1; structur 98.0 0.00014 4.9E-09 60.2 14.7 95 410-506 15-109 (126)
132 4f3v_A ESX-1 secretion system 98.0 0.00012 4.2E-09 69.1 15.7 131 518-653 106-244 (282)
133 2lni_A Stress-induced-phosphop 98.0 0.00011 3.9E-09 61.1 14.3 97 408-506 16-112 (133)
134 3gw4_A Uncharacterized protein 98.0 0.00018 6.1E-09 65.2 15.5 134 409-542 27-175 (203)
135 2e2e_A Formate-dependent nitri 98.0 0.00014 4.8E-09 64.4 14.4 121 419-543 21-144 (177)
136 3gyz_A Chaperone protein IPGC; 98.0 0.00011 3.7E-09 63.1 12.8 95 410-506 38-132 (151)
137 3gyz_A Chaperone protein IPGC; 98.0 0.00017 5.6E-09 61.9 13.9 103 336-479 36-138 (151)
138 2vgx_A Chaperone SYCD; alterna 98.0 7.6E-05 2.6E-09 63.9 11.8 96 444-542 22-117 (148)
139 2lni_A Stress-induced-phosphop 97.9 0.00026 8.9E-09 58.8 14.9 120 440-564 13-132 (133)
140 2vyi_A SGTA protein; chaperone 97.9 0.00031 1.1E-08 57.9 15.2 119 442-565 11-129 (131)
141 3q7a_A Farnesyltransferase alp 97.9 0.0035 1.2E-07 61.3 24.3 225 412-644 58-330 (349)
142 2e2e_A Formate-dependent nitri 97.9 4.6E-05 1.6E-09 67.6 10.1 112 528-643 24-142 (177)
143 2vgx_A Chaperone SYCD; alterna 97.9 0.0003 1E-08 60.1 14.6 96 409-506 22-117 (148)
144 4f3v_A ESX-1 secretion system 97.9 0.0006 2E-08 64.4 17.4 195 420-623 18-248 (282)
145 3q7a_A Farnesyltransferase alp 97.9 0.0058 2E-07 59.7 24.9 174 312-528 65-256 (349)
146 3sz7_A HSC70 cochaperone (SGT) 97.9 0.00034 1.2E-08 61.0 14.8 96 409-506 12-107 (164)
147 2c2l_A CHIP, carboxy terminus 97.9 0.00026 8.9E-09 68.2 15.2 189 408-610 4-198 (281)
148 3upv_A Heat shock protein STI1 97.9 0.00021 7.1E-09 59.1 12.6 105 552-658 6-120 (126)
149 1p5q_A FKBP52, FK506-binding p 97.8 0.00037 1.3E-08 69.0 16.3 128 410-540 149-291 (336)
150 3upv_A Heat shock protein STI1 97.8 0.00052 1.8E-08 56.6 14.4 95 410-506 6-100 (126)
151 1elw_A TPR1-domain of HOP; HOP 97.8 0.00024 8E-09 57.5 12.2 103 514-620 4-110 (118)
152 1elw_A TPR1-domain of HOP; HOP 97.8 0.00094 3.2E-08 53.8 15.9 95 410-506 6-100 (118)
153 2dba_A Smooth muscle cell asso 97.8 0.00053 1.8E-08 58.2 14.6 111 549-661 27-144 (148)
154 2xcb_A PCRH, regulatory protei 97.8 0.00045 1.5E-08 58.5 14.0 95 410-506 20-114 (142)
155 2kck_A TPR repeat; tetratricop 97.8 0.00032 1.1E-08 56.0 12.5 95 410-506 8-105 (112)
156 1p5q_A FKBP52, FK506-binding p 97.8 0.00058 2E-08 67.6 16.7 132 442-577 146-292 (336)
157 1elr_A TPR2A-domain of HOP; HO 97.8 0.00025 8.4E-09 58.7 11.8 96 410-506 6-107 (131)
158 2xcb_A PCRH, regulatory protei 97.8 0.00022 7.6E-09 60.4 11.6 87 556-644 24-114 (142)
159 3q49_B STIP1 homology and U bo 97.8 0.0007 2.4E-08 56.6 14.6 97 408-506 9-105 (137)
160 4gcn_A Protein STI-1; structur 97.7 0.00073 2.5E-08 55.9 13.7 95 411-506 11-111 (127)
161 3sz7_A HSC70 cochaperone (SGT) 97.7 0.00085 2.9E-08 58.4 14.6 105 442-549 10-114 (164)
162 4b4t_Q 26S proteasome regulato 97.7 0.016 5.4E-07 59.4 26.5 96 410-505 137-243 (434)
163 3q49_B STIP1 homology and U bo 97.7 0.00067 2.3E-08 56.8 13.3 93 550-644 9-105 (137)
164 2fbn_A 70 kDa peptidylprolyl i 97.7 0.00011 3.8E-09 66.5 8.9 148 418-570 14-176 (198)
165 4b4t_Q 26S proteasome regulato 97.7 0.0013 4.4E-08 67.7 18.1 161 416-576 12-201 (434)
166 2kck_A TPR repeat; tetratricop 97.7 0.00063 2.2E-08 54.2 12.4 97 443-542 6-105 (112)
167 1elr_A TPR2A-domain of HOP; HO 97.7 0.00046 1.6E-08 57.0 11.9 108 444-556 5-118 (131)
168 3ro3_A PINS homolog, G-protein 97.7 0.00051 1.7E-08 59.2 12.6 62 516-577 91-156 (164)
169 4gcn_A Protein STI-1; structur 97.6 0.0019 6.5E-08 53.3 14.3 98 444-542 9-111 (127)
170 2dba_A Smooth muscle cell asso 97.6 0.003 1E-07 53.3 15.9 97 407-506 27-127 (148)
171 3dss_A Geranylgeranyl transfer 97.6 0.056 1.9E-06 52.5 26.3 191 424-622 90-315 (331)
172 1hxi_A PEX5, peroxisome target 97.6 0.00084 2.9E-08 55.0 11.6 94 411-506 20-113 (121)
173 3ro3_A PINS homolog, G-protein 97.5 0.0008 2.7E-08 57.9 12.1 133 410-542 11-157 (164)
174 2fbn_A 70 kDa peptidylprolyl i 97.5 0.0016 5.5E-08 58.7 14.4 128 410-541 40-184 (198)
175 2xev_A YBGF; tetratricopeptide 97.5 0.0014 4.9E-08 54.0 13.1 52 594-645 51-105 (129)
176 3k9i_A BH0479 protein; putativ 97.5 0.00024 8.1E-09 57.9 7.7 85 421-506 3-89 (117)
177 1wao_1 Serine/threonine protei 97.4 0.00071 2.4E-08 70.6 11.7 122 415-538 13-134 (477)
178 1hxi_A PEX5, peroxisome target 97.4 0.00066 2.3E-08 55.6 9.2 87 555-643 22-112 (121)
179 3dss_A Geranylgeranyl transfer 97.4 0.082 2.8E-06 51.3 24.4 184 280-506 45-266 (331)
180 2xev_A YBGF; tetratricopeptide 97.3 0.0087 3E-07 49.0 15.4 90 414-506 8-104 (129)
181 3k9i_A BH0479 protein; putativ 97.3 0.00037 1.3E-08 56.7 6.3 86 456-543 3-90 (117)
182 1wao_1 Serine/threonine protei 97.3 0.0014 4.6E-08 68.4 11.8 120 450-574 13-134 (477)
183 1kt0_A FKBP51, 51 kDa FK506-bi 97.2 0.0032 1.1E-07 65.2 14.2 98 478-577 268-378 (457)
184 3rkv_A Putative peptidylprolyl 97.2 0.0034 1.2E-07 54.3 11.9 58 591-648 72-129 (162)
185 3rkv_A Putative peptidylprolyl 97.2 0.0055 1.9E-07 52.9 13.0 96 410-506 13-125 (162)
186 1ihg_A Cyclophilin 40; ppiase 97.1 0.0052 1.8E-07 61.5 13.7 95 411-506 226-335 (370)
187 3n71_A Histone lysine methyltr 97.1 0.0045 1.5E-07 64.2 13.3 132 310-471 318-463 (490)
188 1kt0_A FKBP51, 51 kDa FK506-bi 97.1 0.0074 2.5E-07 62.5 14.9 119 410-533 270-404 (457)
189 3n71_A Histone lysine methyltr 97.0 0.0026 8.8E-08 66.0 10.1 129 345-506 318-463 (490)
190 1ihg_A Cyclophilin 40; ppiase 96.9 0.012 4.2E-07 58.8 14.4 96 445-542 225-335 (370)
191 2kat_A Uncharacterized protein 96.9 0.0047 1.6E-07 49.7 9.1 79 426-506 3-81 (115)
192 2l6j_A TPR repeat-containing p 96.8 0.0011 3.9E-08 52.8 4.9 90 552-643 6-105 (111)
193 2hr2_A Hypothetical protein; a 96.8 0.021 7.3E-07 48.4 12.5 94 411-506 14-130 (159)
194 2l6j_A TPR repeat-containing p 96.8 0.0015 5.1E-08 52.1 5.1 62 410-472 6-67 (111)
195 1na3_A Designed protein CTPR2; 96.7 0.022 7.4E-07 43.0 11.1 77 410-488 11-87 (91)
196 1klx_A Cysteine rich protein B 96.7 0.075 2.6E-06 44.3 15.1 49 527-579 74-126 (138)
197 2if4_A ATFKBP42; FKBP-like, al 96.6 0.0047 1.6E-07 61.1 8.7 143 478-643 179-326 (338)
198 1dce_A Protein (RAB geranylger 96.6 0.14 4.8E-06 54.3 20.4 133 530-665 89-241 (567)
199 2hr2_A Hypothetical protein; a 96.6 0.019 6.5E-07 48.8 10.8 52 593-644 68-130 (159)
200 2if4_A ATFKBP42; FKBP-like, al 96.6 0.0078 2.7E-07 59.5 9.9 144 411-578 182-327 (338)
201 2kat_A Uncharacterized protein 96.5 0.012 4E-07 47.3 9.2 79 461-542 3-81 (115)
202 1klx_A Cysteine rich protein B 96.5 0.078 2.7E-06 44.1 14.2 110 422-543 9-126 (138)
203 3ma5_A Tetratricopeptide repea 96.4 0.015 5.1E-07 45.3 8.5 60 409-469 8-67 (100)
204 3qww_A SET and MYND domain-con 96.3 0.026 8.8E-07 57.5 11.9 111 526-661 310-432 (433)
205 3mkq_A Coatomer beta'-subunit; 96.3 0.11 3.8E-06 58.0 18.2 46 454-505 663-708 (814)
206 3ma5_A Tetratricopeptide repea 96.2 0.029 1E-06 43.6 9.3 66 440-506 4-69 (100)
207 1dce_A Protein (RAB geranylger 96.2 0.2 6.9E-06 53.1 18.4 174 279-495 43-243 (567)
208 1zu2_A Mitochondrial import re 96.1 0.018 6.1E-07 48.8 8.1 98 419-521 13-131 (158)
209 1na3_A Designed protein CTPR2; 96.1 0.066 2.3E-06 40.2 10.7 62 444-506 10-71 (91)
210 3qwp_A SET and MYND domain-con 96.1 0.051 1.7E-06 55.3 12.6 114 522-660 295-420 (429)
211 1wy6_A Hypothetical protein ST 95.6 0.47 1.6E-05 38.2 13.4 140 419-582 18-157 (172)
212 2kc7_A BFR218_protein; tetratr 95.5 0.047 1.6E-06 42.0 7.8 56 558-615 8-68 (99)
213 3qww_A SET and MYND domain-con 95.3 0.089 3.1E-06 53.4 11.1 93 313-436 310-410 (433)
214 3mkq_A Coatomer beta'-subunit; 95.3 0.7 2.4E-05 51.5 19.7 27 443-469 681-707 (814)
215 3qwp_A SET and MYND domain-con 95.1 0.18 6.1E-06 51.3 12.5 99 307-436 293-399 (429)
216 2kc7_A BFR218_protein; tetratr 95.0 0.085 2.9E-06 40.5 7.9 58 415-473 7-65 (99)
217 1zu2_A Mitochondrial import re 95.0 0.12 4.1E-06 43.7 9.0 98 279-382 16-135 (158)
218 3ly7_A Transcriptional activat 94.9 0.62 2.1E-05 45.5 15.0 73 511-588 274-346 (372)
219 3ly7_A Transcriptional activat 94.8 0.48 1.6E-05 46.3 14.0 61 549-611 276-339 (372)
220 3mkq_B Coatomer subunit alpha; 94.8 1.3 4.3E-05 38.1 15.0 45 455-505 17-61 (177)
221 1pc2_A Mitochondria fission pr 94.5 0.21 7.2E-06 41.8 9.1 90 566-655 14-110 (152)
222 3mkq_B Coatomer subunit alpha; 94.3 1.6 5.6E-05 37.4 14.4 48 310-363 14-61 (177)
223 2v5f_A Prolyl 4-hydroxylase su 93.7 0.22 7.6E-06 38.8 7.6 47 614-660 44-93 (104)
224 3bee_A Putative YFRE protein; 93.3 0.76 2.6E-05 34.8 9.8 66 407-473 5-73 (93)
225 1pc2_A Mitochondria fission pr 92.3 0.61 2.1E-05 38.9 8.4 16 489-504 82-97 (152)
226 3bee_A Putative YFRE protein; 91.4 3.5 0.00012 31.1 11.4 65 441-506 4-71 (93)
227 2v5f_A Prolyl 4-hydroxylase su 91.4 1.3 4.5E-05 34.3 9.3 65 408-472 5-75 (104)
228 4b4t_P 26S proteasome regulato 91.4 13 0.00046 37.5 20.2 165 411-576 140-321 (445)
229 1nzn_A CGI-135 protein, fissio 90.4 2.1 7.1E-05 34.3 9.4 91 565-656 16-114 (126)
230 1wy6_A Hypothetical protein ST 90.0 6.7 0.00023 31.7 15.2 69 299-368 89-157 (172)
231 3u64_A Protein TP_0956; tetrat 88.6 4 0.00014 38.2 11.2 92 424-518 179-281 (301)
232 4gns_B Protein CSD3, chitin bi 88.4 7 0.00024 42.3 14.6 54 590-643 345-398 (754)
233 2wpv_A GET4, UPF0363 protein Y 87.2 21 0.00071 33.9 19.9 132 392-543 76-217 (312)
234 4h7y_A Dual specificity protei 86.5 6.6 0.00022 32.5 9.9 104 408-514 13-129 (161)
235 1qsa_A Protein (soluble lytic 86.5 34 0.0012 36.2 18.3 286 343-641 13-344 (618)
236 3u64_A Protein TP_0956; tetrat 86.1 6.7 0.00023 36.7 11.1 95 280-377 178-283 (301)
237 2ff4_A Probable regulatory pro 85.3 13 0.00046 36.7 14.0 75 588-662 177-257 (388)
238 4b4t_P 26S proteasome regulato 85.1 34 0.0012 34.5 18.5 50 422-471 30-84 (445)
239 1nzn_A CGI-135 protein, fissio 84.5 4.2 0.00014 32.6 7.9 18 524-541 84-101 (126)
240 2ff4_A Probable regulatory pro 82.9 5.9 0.0002 39.3 10.2 68 412-480 175-247 (388)
241 4ady_A RPN2, 26S proteasome re 82.3 67 0.0023 35.7 36.3 260 309-578 382-657 (963)
242 4gns_B Protein CSD3, chitin bi 82.2 7.2 0.00025 42.2 11.0 55 415-470 344-398 (754)
243 4h7y_A Dual specificity protei 81.4 22 0.00074 29.5 11.3 64 421-486 73-136 (161)
244 1v54_E Cytochrome C oxidase po 80.4 17 0.00058 27.6 10.1 63 493-558 25-87 (109)
245 3txn_A 26S proteasome regulato 80.2 48 0.0016 32.7 15.5 162 478-639 19-204 (394)
246 1v54_E Cytochrome C oxidase po 80.1 17 0.00059 27.5 9.2 64 386-450 23-86 (109)
247 1y8m_A FIS1; mitochondria, unk 78.4 26 0.00089 28.6 11.2 78 588-665 45-130 (144)
248 4fhn_B Nucleoporin NUP120; pro 77.0 68 0.0023 37.0 17.9 52 413-469 817-868 (1139)
249 3lpz_A GET4 (YOR164C homolog); 76.7 54 0.0018 31.4 21.8 113 304-431 38-159 (336)
250 2y69_E Cytochrome C oxidase su 76.4 28 0.00097 28.0 10.1 63 493-558 68-130 (152)
251 3lvg_A Clathrin heavy chain 1; 75.8 0.0012 4.1E-08 65.7 -18.5 153 410-577 85-256 (624)
252 2p58_C Putative type III secre 75.5 22 0.00076 26.8 8.4 55 559-617 49-104 (116)
253 4ady_A RPN2, 26S proteasome re 74.1 1.1E+02 0.0039 33.9 25.0 207 311-528 500-720 (963)
254 3ffl_A Anaphase-promoting comp 73.2 31 0.0011 29.0 9.9 133 508-648 12-154 (167)
255 2p58_C Putative type III secre 72.8 24 0.00082 26.7 8.0 46 454-505 51-96 (116)
256 2y69_E Cytochrome C oxidase su 72.4 33 0.0011 27.6 9.2 60 390-450 70-129 (152)
257 1zbp_A Hypothetical protein VP 70.8 21 0.00072 32.8 9.1 49 560-610 7-59 (273)
258 2uwj_G Type III export protein 70.5 21 0.00073 26.9 7.3 55 559-617 48-103 (115)
259 3eiq_C Programmed cell death p 70.5 80 0.0027 30.5 14.0 116 517-646 220-340 (358)
260 2uwj_G Type III export protein 70.2 23 0.00078 26.7 7.4 49 419-473 50-98 (115)
261 4fhn_B Nucleoporin NUP120; pro 70.1 92 0.0032 35.9 16.7 167 306-495 817-988 (1139)
262 3o48_A Mitochondria fission 1 68.2 41 0.0014 27.0 9.2 67 589-655 47-117 (134)
263 3ffl_A Anaphase-promoting comp 66.0 36 0.0012 28.6 8.8 24 517-540 66-89 (167)
264 3eiq_C Programmed cell death p 65.1 66 0.0023 31.1 11.9 64 446-511 220-285 (358)
265 3o48_A Mitochondria fission 1 64.8 53 0.0018 26.4 10.1 70 403-472 35-107 (134)
266 2wpv_A GET4, UPF0363 protein Y 63.0 1E+02 0.0035 29.1 22.2 170 303-506 35-216 (312)
267 1g1e_B SIN3A; four-helix bundl 57.7 31 0.0011 25.5 6.3 64 598-661 10-87 (89)
268 3lvg_A Clathrin heavy chain 1; 55.4 0.0065 2.2E-07 60.6 -18.0 116 302-434 55-170 (624)
269 1y8m_A FIS1; mitochondria, unk 55.3 84 0.0029 25.6 12.3 68 405-472 36-106 (144)
270 2czy_A Paired amphipathic heli 53.6 56 0.0019 23.3 7.0 70 597-667 3-74 (77)
271 3bu8_A Telomeric repeat-bindin 53.4 70 0.0024 28.0 8.5 14 281-294 88-101 (235)
272 4b4t_R RPN7, 26S proteasome re 49.3 1.4E+02 0.0046 29.9 11.8 95 410-506 133-236 (429)
273 4b4t_R RPN7, 26S proteasome re 48.7 1.3E+02 0.0045 29.9 11.6 99 444-544 132-238 (429)
274 1wdy_A 2-5A-dependent ribonucl 46.4 43 0.0015 30.7 7.2 17 306-322 7-23 (285)
275 1wdy_A 2-5A-dependent ribonucl 43.9 23 0.0008 32.6 4.9 45 562-606 191-240 (285)
276 3t8k_A Uncharacterized protein 41.3 48 0.0016 28.5 6.2 30 342-371 41-70 (186)
277 3esl_A Checkpoint serine/threo 39.4 1.9E+02 0.0066 25.1 9.9 55 528-583 93-148 (202)
278 2ion_A PDCD4, programmed cell 37.9 1.4E+02 0.0048 24.6 8.1 66 304-370 12-79 (152)
279 2cr7_A Paired amphipathic heli 37.3 62 0.0021 23.3 5.1 67 597-664 9-77 (80)
280 1dm5_A Annexin XII E105K mutan 36.8 2.8E+02 0.0094 26.2 18.4 40 568-609 248-289 (315)
281 2zu6_B Programmed cell death p 36.2 2.2E+02 0.0077 26.7 10.2 189 305-495 7-254 (307)
282 1k1a_A B-cell lymphoma 3-encod 36.2 56 0.0019 29.0 6.1 183 413-606 11-204 (241)
283 2r9g_A AAA ATPase, central reg 36.2 2.1E+02 0.0073 24.8 10.2 36 350-386 28-63 (204)
284 3lpz_A GET4 (YOR164C homolog); 35.6 3E+02 0.01 26.2 31.2 170 338-542 37-215 (336)
285 2nsz_A Programmed cell death p 35.5 1.7E+02 0.0057 23.3 9.4 66 304-370 10-77 (129)
286 3bge_A Predicted ATPase; struc 33.3 2.3E+02 0.0079 24.5 8.7 38 349-386 20-57 (201)
287 3esl_A Checkpoint serine/threo 32.5 2.5E+02 0.0085 24.4 10.1 56 421-476 92-148 (202)
288 2qx5_A Nucleoporin NIC96; mRNA 32.2 2.3E+02 0.0079 30.1 10.5 304 306-660 157-483 (661)
289 1e91_A Paired amphipathic heli 30.9 93 0.0032 22.7 5.2 66 598-663 7-83 (85)
290 1zbp_A Hypothetical protein VP 30.4 3.2E+02 0.011 25.0 13.4 115 523-644 6-128 (273)
291 2d2s_A Exocyst complex compone 27.7 3.3E+02 0.011 24.3 9.5 91 413-506 23-119 (235)
292 2hyv_A Annexin A2; calcium-bin 26.0 4.1E+02 0.014 24.9 17.6 39 568-608 239-279 (308)
293 3cl3_A ORF K13, KS-vflip; deat 26.0 1.5E+02 0.005 25.5 6.3 105 563-669 37-153 (183)
294 3hra_A Ankyrin repeat family p 25.6 68 0.0023 27.4 4.5 15 570-584 158-172 (201)
295 2wvi_A Mitotic checkpoint seri 25.3 1.6E+02 0.0056 24.6 6.4 52 318-369 77-129 (164)
296 3ctd_A Putative ATPase, AAA fa 24.4 3.6E+02 0.012 23.6 9.6 32 315-346 49-80 (213)
297 1wfd_A Hypothetical protein 15 24.2 2.2E+02 0.0075 21.1 6.6 61 593-663 26-86 (93)
298 2nsz_A Programmed cell death p 24.1 2.7E+02 0.0092 22.0 9.4 68 338-406 9-76 (129)
299 4fke_A Aminopeptidase N; zinc 24.0 7.7E+02 0.026 27.3 15.8 158 412-578 690-859 (909)
300 3ljn_A Hypothetical protein; a 23.5 2.4E+02 0.008 26.9 8.5 222 368-607 15-266 (364)
301 3eu9_A Huntingtin-interacting 23.3 82 0.0028 27.7 4.7 11 415-425 46-56 (240)
302 4ets_A Ferric uptake regulatio 23.0 1.8E+02 0.006 24.3 6.3 70 282-352 14-85 (162)
303 3pvs_A Replication-associated 22.7 5.8E+02 0.02 25.4 13.2 110 262-388 189-307 (447)
304 3eu9_A Huntingtin-interacting 22.6 57 0.0019 28.9 3.5 14 561-574 218-231 (240)
305 1yii_A Annexin A5, annexin V, 22.4 4.9E+02 0.017 24.5 19.5 40 567-608 249-290 (320)
306 2ion_A PDCD4, programmed cell 22.2 3.3E+02 0.011 22.3 9.4 68 338-406 11-78 (152)
307 3f3f_C Nucleoporin NUP85; stru 22.0 2.8E+02 0.0094 28.6 8.4 86 411-498 482-569 (570)
308 3kea_A K1L; tropism, ANK repea 21.1 2.2E+02 0.0074 26.1 7.3 223 252-503 13-243 (285)
309 3ltm_A Alpha-REP4; protein eng 20.9 3.9E+02 0.013 22.7 16.4 183 396-597 21-203 (211)
310 2fe3_A Peroxide operon regulat 20.6 2.9E+02 0.01 22.3 7.1 60 571-630 8-70 (145)
311 3l6a_A Eukaryotic translation 20.0 4E+02 0.014 25.7 9.0 129 412-545 16-153 (364)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=5.9e-38 Score=344.22 Aligned_cols=452 Identities=12% Similarity=-0.013 Sum_probs=355.2
Q ss_pred CCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHH
Q 042546 141 ESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRNKMTEKFEKEGLESDLEK 220 (671)
Q Consensus 141 ~~~~~~A~~~f~~m~~~~~~~~~~~~~n~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~~~ 220 (671)
.|++++|+.+|+.+.. ..||..+|+.++.+|.+.|++++|+.+|+++... .++..+++.++.+|.+.|++++|..
T Consensus 97 ~g~~~~A~~~~~~~~~---~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~ 171 (597)
T 2xpi_A 97 QQQYKCAAFVGEKVLD---ITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLAAFCLVKLYDWQGALN 171 (597)
T ss_dssp TTCHHHHHHHHHHHHH---HHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ccCchHHHHHHHHHHh---hCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHH
Confidence 5889999999998864 2378888889999999999999999999888643 6788899999999999988887776
Q ss_pred HHHHHHcCCCCChHHHHHHHHHHHHhcCCChhHHHHHHhhcccccChHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCC
Q 042546 221 LKGIFATGSIDNSIEKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHD 300 (671)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~ 300 (671)
+.+ +.......... + +.......+.+++
T Consensus 172 ~~~---~~~~~~~~~~~----~---------------------------------------------~~~~~~~~~~~~~ 199 (597)
T 2xpi_A 172 LLG---ETNPFRKDEKN----A---------------------------------------------NKLLMQDGGIKLE 199 (597)
T ss_dssp HHC---SSCTTC-----------------------------------------------------------CCCSSCCHH
T ss_pred HHh---ccCCccccccc----c---------------------------------------------ccccccccccchh
Confidence 543 11111100000 0 0000001222344
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHHcC-------------------------------------CCCCHHHHHHHH
Q 042546 301 ESSYNAMASVLGREDCIDRFWKVLDEMRSKG-------------------------------------YEMEMETCVKVL 343 (671)
Q Consensus 301 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-------------------------------------~~p~~~t~~~li 343 (671)
..+|+.++.+|.+.|++++|.++|++|.+.+ ..++..+|+.++
T Consensus 200 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 279 (597)
T 2xpi_A 200 ASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKL 279 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHH
Confidence 5556666666666666666666666655542 222233344456
Q ss_pred HHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 042546 344 GRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGR 423 (671)
Q Consensus 344 ~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 423 (671)
..|.+.|++++|.++|+++.+. .++..+++.+..++.+.|+.+ .+..+++.+.+.+ +.+..+++.++.+|.+.|+
T Consensus 280 ~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~--~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~ 354 (597)
T 2xpi_A 280 NKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLFVRSRFI--DVLAITTKILEID-PYNLDVYPLHLASLHESGE 354 (597)
T ss_dssp CTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTTCHH--HHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTC
T ss_pred HHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHHHhcCHH--HHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCC
Confidence 6777888999999999988765 578899999999999988554 5667777776654 3367789999999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 042546 424 MGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQK 503 (671)
Q Consensus 424 ~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 503 (671)
+++|.++|+++.+.. +.+..+|+.++.+|.+.|++++|.++|+++.+.. +.+..+|+.++.+|.+.|++++|.++|++
T Consensus 355 ~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 432 (597)
T 2xpi_A 355 KNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTT 432 (597)
T ss_dssp HHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999999999998654 5678999999999999999999999999998754 34688999999999999999999999999
Q ss_pred HHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----
Q 042546 504 MVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDH---- 579 (671)
Q Consensus 504 m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~---- 579 (671)
+.+ . .+.+..+|+.++.+|.+.|++++|.++|+++.+. ...+..+|+.++..|.+.|++++|+++|+++.+.
T Consensus 433 ~~~-~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 508 (597)
T 2xpi_A 433 AAR-L-FQGTHLPYLFLGMQHMQLGNILLANEYLQSSYAL--FQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKT 508 (597)
T ss_dssp HHH-T-TTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS
T ss_pred HHH-h-CccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhcc
Confidence 987 3 3347789999999999999999999999999874 3457889999999999999999999999999875
Q ss_pred CCCCC--HHH---HHHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhchHhhhccHHHHH
Q 042546 580 GFPPF--VDP---FIKYVSKSGTSDDAIAFLKGMTSKRFPSMSVVLCLFAAFFQARRHSEAQDLLSKCPRYVRNHADVLN 654 (671)
Q Consensus 580 ~~~p~--~~t---~~~~l~~~g~~~~A~~~~~~m~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 654 (671)
+..|+ ..+ +..+|.+.|++++|.++++++.+..+.+..+|..+..+|.+.|++++|.++++++.+..+..+.+..
T Consensus 509 ~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~ 588 (597)
T 2xpi_A 509 QSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASD 588 (597)
T ss_dssp CCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred ccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHH
Confidence 66787 333 3677889999999999999999887789999999999999999999999999999887777777777
Q ss_pred HHHhhh
Q 042546 655 LLYSKK 660 (671)
Q Consensus 655 l~~~m~ 660 (671)
.+..+.
T Consensus 589 ~l~~~~ 594 (597)
T 2xpi_A 589 LLKRAL 594 (597)
T ss_dssp HHHHTT
T ss_pred HHHHHH
Confidence 666554
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.4e-33 Score=309.44 Aligned_cols=433 Identities=11% Similarity=-0.026 Sum_probs=343.1
Q ss_pred CCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHH
Q 042546 141 ESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRNKMTEKFEKEGLESDLEK 220 (671)
Q Consensus 141 ~~~~~~A~~~f~~m~~~~~~~~~~~~~n~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~~~ 220 (671)
+|.+..+...|+.++. +++..|+.++..|.+.|++++|+.+|++|.. ..||..++..+..+|.+.
T Consensus 66 ~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~-------- 130 (597)
T 2xpi_A 66 DGSFLKERNAQNTDSL-----SREDYLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCT-------- 130 (597)
T ss_dssp ---------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHT--------
T ss_pred cCccCCCCCccccchH-----HHHHHHHHHHHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHc--------
Confidence 4677778888988887 8999999999999999999999999999985 468889999999999888
Q ss_pred HHHHHHcCCCCChHHHHHHHHHHHHhcCCChhHHHHHHhhcccccChHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCC
Q 042546 221 LKGIFATGSIDNSIEKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHD 300 (671)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~ 300 (671)
|++++|..+|+.+.. .++|
T Consensus 131 ----------------------------------------------------------g~~~~A~~~~~~~~~---~~~~ 149 (597)
T 2xpi_A 131 ----------------------------------------------------------GDYARAKCLLTKEDL---YNRS 149 (597)
T ss_dssp ----------------------------------------------------------TCHHHHHHHHHHTCG---GGTC
T ss_pred ----------------------------------------------------------CcHHHHHHHHHHHhc---cccc
Confidence 566677777776642 2788
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHH-HHc--------------CCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 042546 301 ESSYNAMASVLGREDCIDRFWKVLDEM-RSK--------------GYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMAC 365 (671)
Q Consensus 301 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~--------------g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~ 365 (671)
..+|+.++.+|.+.|++++|.++|+++ ... |.+++..+|+.++.+|.+.|++++|+++|++|.+.
T Consensus 150 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 229 (597)
T 2xpi_A 150 SACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMV 229 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 999999999999999999999999953 222 23446899999999999999999999999999875
Q ss_pred CCCCC-HHHHHHHH--------------------------------------HHHHhcCcccHHHHHHHHHHHHHcCCCC
Q 042546 366 KNKPS-VNCCTFLL--------------------------------------RKIVVSKQLDMRLFSKVVRVFRENGNVL 406 (671)
Q Consensus 366 g~~p~-~~~~~~ll--------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (671)
+ |+ ...+..+. ..|.+.| +.+.+.++++.+.+. ++
T Consensus 230 ~--p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g--~~~~A~~~~~~~~~~--~~ 303 (597)
T 2xpi_A 230 D--AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHED--ELRRAEDYLSSINGL--EK 303 (597)
T ss_dssp C--TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHH--HHHHHHHHHHTSTTG--GG
T ss_pred C--chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcc--hHHHHHHHHHHhhcC--Cc
Confidence 3 43 23333222 2222222 234455566555443 58
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 042546 407 TDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIK 486 (671)
Q Consensus 407 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~ 486 (671)
+..+|+.++.+|.+.|++++|.++|+++.+.+ +.+..+|+.++.+|.+.|++++|.++++++.+.. +.+..+|+.++.
T Consensus 304 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 381 (597)
T 2xpi_A 304 SSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGI 381 (597)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHH
Confidence 89999999999999999999999999999776 4578899999999999999999999999998654 457889999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 042546 487 GHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGF 566 (671)
Q Consensus 487 ~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~ 566 (671)
.|.+.|++++|.++|+++.+ .. +.+..+|+.++.+|.+.|++++|.++|+++... ...+..+|+.++.+|.+.|++
T Consensus 382 ~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~ 457 (597)
T 2xpi_A 382 YYLCVNKISEARRYFSKSST-MD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARL--FQGTHLPYLFLGMQHMQLGNI 457 (597)
T ss_dssp HHHHTTCHHHHHHHHHHHHH-HC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TTTCSHHHHHHHHHHHHHTCH
T ss_pred HHHHhccHHHHHHHHHHHHH-hC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHcCCH
Confidence 99999999999999999987 32 336789999999999999999999999999863 345788999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCCHHH---HHHHHHhcCChHHHHHHHHHhhhC-----CCCC--HHHHHHHHHHHHHcCCHHHHH
Q 042546 567 KDALSLLCLMKDHGFPPFVDP---FIKYVSKSGTSDDAIAFLKGMTSK-----RFPS--MSVVLCLFAAFFQARRHSEAQ 636 (671)
Q Consensus 567 ~~A~~l~~~m~~~~~~p~~~t---~~~~l~~~g~~~~A~~~~~~m~~~-----~~p~--~~~~~~l~~~~~~~g~~~~A~ 636 (671)
++|.++|+++.+.. +.+..+ +..+|.+.|++++|.++|+++.+. ..|+ ..+|..++.+|.+.|++++|.
T Consensus 458 ~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~ 536 (597)
T 2xpi_A 458 LLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAI 536 (597)
T ss_dssp HHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHH
Confidence 99999999998753 223333 367788999999999999999774 2365 789999999999999999999
Q ss_pred HHHHhchHhh-----------------hccHHHHHHHHhhhcC
Q 042546 637 DLLSKCPRYV-----------------RNHADVLNLLYSKKSG 662 (671)
Q Consensus 637 ~~~~~m~~~~-----------------~~~~~~~~l~~~m~~~ 662 (671)
++++++.+.. +..+++...|.++.+.
T Consensus 537 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 579 (597)
T 2xpi_A 537 DALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAI 579 (597)
T ss_dssp HHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 9999976532 3467777777777653
No 3
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=1.5e-31 Score=280.99 Aligned_cols=205 Identities=15% Similarity=0.138 Sum_probs=160.5
Q ss_pred HHHHHHHHHHcCCCCCC-HHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCC---------hH
Q 042546 284 ALIFFRWAEESGFVKHD-ESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNM---------VK 353 (671)
Q Consensus 284 A~~~f~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~---------~~ 353 (671)
+..+++.+.+ .+..+. ...++.+|++|++.|++++|+++|++|.+.|++||..|||+||.+|++.+. ++
T Consensus 9 ~e~L~~~~~~-k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~ 87 (501)
T 4g26_A 9 SENLSRKAKK-KAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLS 87 (501)
T ss_dssp ----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHH
T ss_pred HHHHHHHHHH-hcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHH
Confidence 4444455543 333333 345777888888888888888888888888888888888888888877654 45
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 042546 354 EAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKA 433 (671)
Q Consensus 354 ~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 433 (671)
+|.++|++|.+. |+.||..|||+||.+|++.|++++|.++|++
T Consensus 88 ~A~~lf~~M~~~-------------------------------------G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~ 130 (501)
T 4g26_A 88 RGFDIFKQMIVD-------------------------------------KVVPNEATFTNGARLAVAKDDPEMAFDMVKQ 130 (501)
T ss_dssp HHHHHHHHHHHT-------------------------------------TCCCCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHh-------------------------------------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 566666666654 4555555677778888888999999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCC
Q 042546 434 MEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHA 513 (671)
Q Consensus 434 m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~ 513 (671)
|.+.|+.||..|||++|.+|++.|++++|.++|++|.+.|+.||..||++||.+|++.|++++|.+++++|++ .|..|+
T Consensus 131 M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~-~g~~ps 209 (501)
T 4g26_A 131 MKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRD-LVRQVS 209 (501)
T ss_dssp HHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HTSSBC
T ss_pred HHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHH-hCCCcC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999 899999
Q ss_pred HHHHHHHHHHHHhc
Q 042546 514 GYAIDLLVNTYCSK 527 (671)
Q Consensus 514 ~~~~~~li~~~~~~ 527 (671)
..||+.++..|+..
T Consensus 210 ~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 210 KSTFDMIEEWFKSE 223 (501)
T ss_dssp HHHHHHHHHHHHSH
T ss_pred HHHHHHHHHHHhcC
Confidence 99999999988764
No 4
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=8.1e-32 Score=283.10 Aligned_cols=216 Identities=16% Similarity=0.092 Sum_probs=185.5
Q ss_pred HHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcccHHHHHHHH
Q 042546 318 DRFWKVLDEMRSKGYEME-METCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVV 396 (671)
Q Consensus 318 ~~A~~~~~~m~~~g~~p~-~~t~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~ 396 (671)
..+..+.+++++++..+. ...++.+|++|++.|++++|+++|++|.+.|+.||..|||+||.+|++.+..+.
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~------- 79 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATE------- 79 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSS-------
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhh-------
Confidence 456677788888877655 456899999999999999999999999999999999999999999887764331
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 042546 397 RVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDV 476 (671)
Q Consensus 397 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~ 476 (671)
..+.+.+++|.++|++|.+.|+.||..|||+||.+|++.|++++|.++|++|.+.|+.|
T Consensus 80 ---------------------~~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~P 138 (501)
T 4g26_A 80 ---------------------SSPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQP 138 (501)
T ss_dssp ---------------------SSCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCC
T ss_pred ---------------------hhhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Confidence 13345678999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 042546 477 GDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEEL 556 (671)
Q Consensus 477 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~l 556 (671)
|..||+++|.+|++.|++++|.++|++|.+ .|+.||..||++||++|++.|++++|.++|++|.+. +..|+..||+.+
T Consensus 139 d~~tyn~lI~~~~~~g~~~~A~~l~~~M~~-~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~-g~~ps~~T~~~l 216 (501)
T 4g26_A 139 RLRSYGPALFGFCRKGDADKAYEVDAHMVE-SEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDL-VRQVSKSTFDMI 216 (501)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-TTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TSSBCHHHHHHH
T ss_pred ccceehHHHHHHHHCCCHHHHHHHHHHHHh-cCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHh-CCCcCHHHHHHH
Confidence 999999999999999999999999999999 999999999999999999999999999999999985 999999999999
Q ss_pred HHHHHhc
Q 042546 557 IKNLLVQ 563 (671)
Q Consensus 557 i~~~~~~ 563 (671)
+..|+..
T Consensus 217 ~~~F~s~ 223 (501)
T 4g26_A 217 EEWFKSE 223 (501)
T ss_dssp HHHHHSH
T ss_pred HHHHhcC
Confidence 9999864
No 5
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.94 E-value=4.9e-22 Score=205.03 Aligned_cols=371 Identities=11% Similarity=0.008 Sum_probs=247.4
Q ss_pred CCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHH
Q 042546 141 ESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRNKMTEKFEKEGLESDLEK 220 (671)
Q Consensus 141 ~~~~~~A~~~f~~m~~~~~~~~~~~~~n~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~~~ 220 (671)
.|++++|+..|+.+.+..+ .+...+..+...+.+.|++++|...++...+.. +.+..+|..+...+.+.
T Consensus 12 ~g~~~~A~~~~~~~~~~~p--~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~-------- 80 (388)
T 1w3b_A 12 AGDFEAAERHCMQLWRQEP--DNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKER-------- 80 (388)
T ss_dssp HTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH--------
T ss_pred CCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHC--------
Confidence 3777777777777655322 234555566666777777777777777666542 34556666666666655
Q ss_pred HHHHHHcCCCCChHHHHHHHHHHHHhcCCChhHHHHHHhhcccccChHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCC
Q 042546 221 LKGIFATGSIDNSIEKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHD 300 (671)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~ 300 (671)
|++++|.+.|+++.+.. +.+
T Consensus 81 ----------------------------------------------------------g~~~~A~~~~~~al~~~--p~~ 100 (388)
T 1w3b_A 81 ----------------------------------------------------------GQLQEAIEHYRHALRLK--PDF 100 (388)
T ss_dssp ----------------------------------------------------------TCHHHHHHHHHHHHHHC--TTC
T ss_pred ----------------------------------------------------------CCHHHHHHHHHHHHHcC--cch
Confidence 45556666666655422 334
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 042546 301 ESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEME-METCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLR 379 (671)
Q Consensus 301 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~ 379 (671)
..+|..+...+.+.|++++|.+.|+++.+.. |+ ...+..+...+...|++++|.+.|+++.+. .
T Consensus 101 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~----------- 165 (388)
T 1w3b_A 101 IDGYINLAAALVAAGDMEGAVQAYVSALQYN--PDLYCVRSDLGNLLKALGRLEEAKACYLKAIET--Q----------- 165 (388)
T ss_dssp HHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC--TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHH--C-----------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--C-----------
Confidence 5567777777777777777777777776653 33 445566666677777777777777776632 1
Q ss_pred HHHhcCcccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 042546 380 KIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKK 459 (671)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 459 (671)
+.+..+|+.+...|.+.|++++|...|+++.+.+ +.+...|..+...+...|++
T Consensus 166 -------------------------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~ 219 (388)
T 1w3b_A 166 -------------------------PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIF 219 (388)
T ss_dssp -------------------------TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCT
T ss_pred -------------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCH
Confidence 1223456667777777778888888887777654 34566777777777778888
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 042546 460 DEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHN 539 (671)
Q Consensus 460 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 539 (671)
++|...|++..+.. +.+..++..+...|.+.|++++|.+.|+++.+ .. +.+..+|..+..+|.+.|++++|.+.|++
T Consensus 220 ~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~-~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 296 (388)
T 1w3b_A 220 DRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIE-LQ-PHFPDAYCNLANALKEKGSVAEAEDCYNT 296 (388)
T ss_dssp THHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-TC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-hC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 88888777776653 23466777777777788888888888877776 22 22355677777777777888888888877
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH----HHHHHHHhcCChHHHHHHHHHhhhCCCCC
Q 042546 540 CVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVD----PFIKYVSKSGTSDDAIAFLKGMTSKRFPS 615 (671)
Q Consensus 540 m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~----t~~~~l~~~g~~~~A~~~~~~m~~~~~p~ 615 (671)
+.+. .+.+..+|..+...+.+.|++++|.+.++++.+. .|+.. .+...+.+.|++++|...++++.+..+.+
T Consensus 297 al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~ 372 (388)
T 1w3b_A 297 ALRL--CPTHADSLNNLANIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTF 372 (388)
T ss_dssp HHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTS--CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTC
T ss_pred HHhh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 7763 3456677777777777777888887777777653 34432 22455667777777777777777766666
Q ss_pred HHHHHHHHHHHHHcC
Q 042546 616 MSVVLCLFAAFFQAR 630 (671)
Q Consensus 616 ~~~~~~l~~~~~~~g 630 (671)
...|..+...+.+.|
T Consensus 373 ~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 373 ADAYSNMGNTLKEMQ 387 (388)
T ss_dssp HHHHHHHHHHHHHTC
T ss_pred HHHHHhHHHHHHHcc
Confidence 677777766666554
No 6
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.93 E-value=4.2e-22 Score=205.52 Aligned_cols=327 Identities=12% Similarity=0.062 Sum_probs=271.5
Q ss_pred CChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHH
Q 042546 279 DEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDL 358 (671)
Q Consensus 279 ~~~~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l 358 (671)
|+.++|..+++...+.. +.+..+|+.+...|.+.|++++|.+.|+++.+.. +.+..+|..+..++.+.|++++|.+.
T Consensus 47 ~~~~~a~~~~~~a~~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~ 123 (388)
T 1w3b_A 47 RRLDRSAHFSTLAIKQN--PLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQA 123 (388)
T ss_dssp TCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHH
T ss_pred CCHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 67777777777766533 6678899999999999999999999999998763 22466899999999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 042546 359 YEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGG 438 (671)
Q Consensus 359 ~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 438 (671)
|+++.+. .|+ +...+..+...|...|++++|.+.|+++.+..
T Consensus 124 ~~~al~~--~p~------------------------------------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 165 (388)
T 1w3b_A 124 YVSALQY--NPD------------------------------------LYCVRSDLGNLLKALGRLEEAKACYLKAIETQ 165 (388)
T ss_dssp HHHHHHH--CTT------------------------------------CTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC
T ss_pred HHHHHHh--CCC------------------------------------cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 9988752 222 22346667778889999999999999998764
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHH
Q 042546 439 FIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAID 518 (671)
Q Consensus 439 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~ 518 (671)
+.+..+|+.+...|.+.|++++|...|+++.+.+ +.+...|..+...+...|++++|...+++..+ .. +.+..++.
T Consensus 166 -p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~-~~-p~~~~~~~ 241 (388)
T 1w3b_A 166 -PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALS-LS-PNHAVVHG 241 (388)
T ss_dssp -TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHH-HC-TTCHHHHH
T ss_pred -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-hC-cCCHHHHH
Confidence 4567899999999999999999999999998865 34577899999999999999999999999977 22 23578899
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH---HHHHHhc
Q 042546 519 LLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPF---IKYVSKS 595 (671)
Q Consensus 519 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~t~---~~~l~~~ 595 (671)
.+..+|.+.|++++|.+.|+++.+. .+.+..+|..+...+.+.|++++|.+.++++.+.. +++..++ ...+.+.
T Consensus 242 ~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~ 318 (388)
T 1w3b_A 242 NLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQ 318 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHc
Confidence 9999999999999999999999863 23356789999999999999999999999998752 2233333 5667899
Q ss_pred CChHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhchHhhhccHHHH
Q 042546 596 GTSDDAIAFLKGMTSKRFPSMSVVLCLFAAFFQARRHSEAQDLLSKCPRYVRNHADVL 653 (671)
Q Consensus 596 g~~~~A~~~~~~m~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~ 653 (671)
|++++|...++++.+..+.+...|..+..+|.+.|++++|.+.++++.+..+....+.
T Consensus 319 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~ 376 (388)
T 1w3b_A 319 GNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAY 376 (388)
T ss_dssp TCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHH
T ss_pred CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH
Confidence 9999999999999998888899999999999999999999999999876555555444
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.89 E-value=1.1e-19 Score=194.74 Aligned_cols=240 Identities=13% Similarity=0.026 Sum_probs=200.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 042546 408 DAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKG 487 (671)
Q Consensus 408 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~ 487 (671)
..++..+...+...|++++|...|+++.+.. |+...|..+...|...|++++|.+.++++.+.. +.+..+|..+...
T Consensus 237 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 313 (514)
T 2gw1_A 237 AISLEHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQM 313 (514)
T ss_dssp HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHH
Confidence 4568888899999999999999999998765 448889999999999999999999999998764 3467789999999
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 042546 488 HCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFK 567 (671)
Q Consensus 488 ~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~ 567 (671)
+...|++++|...+++..+ .. +.+...+..+...|...|++++|...|+.+... .+.+...|..+...|.+.|+++
T Consensus 314 ~~~~~~~~~A~~~~~~~~~-~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~ 389 (514)
T 2gw1_A 314 NFILQNYDQAGKDFDKAKE-LD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRK--FPEAPEVPNFFAEILTDKNDFD 389 (514)
T ss_dssp HHHTTCTTHHHHHHHHHHH-TC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHTTCHH
T ss_pred HHHhCCHHHHHHHHHHHHH-hC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--cccCHHHHHHHHHHHHHCCCHH
Confidence 9999999999999999987 33 235668888999999999999999999999874 2335678888999999999999
Q ss_pred HHHHHHHHHHhCCCC-CC-------HHHHHHHHHh---cCChHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 042546 568 DALSLLCLMKDHGFP-PF-------VDPFIKYVSK---SGTSDDAIAFLKGMTSKRFPSMSVVLCLFAAFFQARRHSEAQ 636 (671)
Q Consensus 568 ~A~~l~~~m~~~~~~-p~-------~~t~~~~l~~---~g~~~~A~~~~~~m~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 636 (671)
+|.+.++++.+.... |+ ...+...+.. .|++++|...++.+....+.+...|..+..+|.+.|++++|.
T Consensus 390 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~ 469 (514)
T 2gw1_A 390 KALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAI 469 (514)
T ss_dssp HHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHH
Confidence 999999988753211 11 1223566678 999999999999999877778899999999999999999999
Q ss_pred HHHHhchHhhhccHHHHH
Q 042546 637 DLLSKCPRYVRNHADVLN 654 (671)
Q Consensus 637 ~~~~~m~~~~~~~~~~~~ 654 (671)
+.+++..+..+..++++.
T Consensus 470 ~~~~~a~~~~~~~~~~~~ 487 (514)
T 2gw1_A 470 TLFEESADLARTMEEKLQ 487 (514)
T ss_dssp HHHHHHHHHCSSHHHHHH
T ss_pred HHHHHHHHhccccHHHHH
Confidence 999998766555444433
No 8
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.88 E-value=4.3e-19 Score=186.77 Aligned_cols=309 Identities=7% Similarity=0.014 Sum_probs=239.8
Q ss_pred CCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHcCCCCChHHHHHHHH
Q 042546 162 LSSKTYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRNKMTEKFEKEGLESDLEKLKGIFATGSIDNSIEKVASRI 241 (671)
Q Consensus 162 ~~~~~~n~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (671)
.++..|..+...+.+.|++++|+.+|+++.+.. +.+..++..+..++...
T Consensus 24 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~----------------------------- 73 (450)
T 2y4t_A 24 ADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAM----------------------------- 73 (450)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT-----------------------------
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHC-----------------------------
Confidence 457789999999999999999999999998763 34677777777777666
Q ss_pred HHHHhcCCChhHHHHHHhhcccccChHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHccCChHHHH
Q 042546 242 CKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFW 321 (671)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 321 (671)
|++++|...|+.+.+.. +.+..+|..+...|.+.|++++|.
T Consensus 74 -------------------------------------g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~ 114 (450)
T 2y4t_A 74 -------------------------------------GKSKAALPDLTKVIQLK--MDFTAARLQRGHLLLKQGKLDEAE 114 (450)
T ss_dssp -------------------------------------TCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred -------------------------------------CCHHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHcCCHHHHH
Confidence 56777777777776532 556888999999999999999999
Q ss_pred HHHHHHHHcCCCCC-H---HHHHHHHHH------------HHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 042546 322 KVLDEMRSKGYEME-M---ETCVKVLGR------------FSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSK 385 (671)
Q Consensus 322 ~~~~~m~~~g~~p~-~---~t~~~li~~------------~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~ 385 (671)
+.|+++.+. .|+ . ..+..+... +.+.|++++|...|+.+.+.
T Consensus 115 ~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-------------------- 172 (450)
T 2y4t_A 115 DDFKKVLKS--NPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEV-------------------- 172 (450)
T ss_dssp HHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------------------
T ss_pred HHHHHHHhc--CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------------------
Confidence 999999875 344 3 566555443 77888888888888887642
Q ss_pred cccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 042546 386 QLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEF 465 (671)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 465 (671)
.+.+..++..+..+|.+.|++++|.++|+++.+.. +.+..+|..+...|.+.|++++|.+.
T Consensus 173 ------------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~ 233 (450)
T 2y4t_A 173 ------------------CVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSE 233 (450)
T ss_dssp ------------------CTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ------------------CCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 12244567788888899999999999999887654 46788899999999999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHH------------HHHHHhcCCHHHHHHHHHHHHHcCCCCCC-----HHHHHHHHHHHHhcC
Q 042546 466 MDHMEASGSDVGDKMWVSL------------IKGHCVAGDLDKAADCFQKMVEKEGTSHA-----GYAIDLLVNTYCSKN 528 (671)
Q Consensus 466 ~~~m~~~g~~~~~~~~~~l------------i~~~~~~g~~~~a~~~~~~m~~~~g~~p~-----~~~~~~li~~~~~~g 528 (671)
|+++.+.. +.+...+..+ ...|.+.|++++|.+.|+++.+ . .|+ ...+..+..+|.+.|
T Consensus 234 ~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~-~--~p~~~~~~~~~~~~l~~~~~~~g 309 (450)
T 2y4t_A 234 VRECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMK-T--EPSIAEYTVRSKERICHCFSKDE 309 (450)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-H--CCSSHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHhC-CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-c--CCcchHHHHHHHHHHHHHHHHCC
Confidence 99988653 2234445444 7888899999999999999877 2 333 457788888899999
Q ss_pred CHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 042546 529 RAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPF 588 (671)
Q Consensus 529 ~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~t~ 588 (671)
++++|...++++... .+.+...|..+..+|...|++++|.+.++++.+ +.|+....
T Consensus 310 ~~~~A~~~~~~a~~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~ 365 (450)
T 2y4t_A 310 KPVEAIRVCSEVLQM--EPDNVNALKDRAEAYLIEEMYDEAIQDYETAQE--HNENDQQI 365 (450)
T ss_dssp CHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TSSSCHHH
T ss_pred CHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCcchHHH
Confidence 999999999988763 233678888899999999999999999998886 46665443
No 9
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.87 E-value=7.9e-19 Score=184.77 Aligned_cols=308 Identities=12% Similarity=0.049 Sum_probs=204.8
Q ss_pred CCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHH
Q 042546 298 KHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFL 377 (671)
Q Consensus 298 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~l 377 (671)
+.+...|..+...+.+.|++++|..+|+++.+.. +.+..+|..+..++...|++++|...|+++.+.+ |
T Consensus 23 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p-------- 91 (450)
T 2y4t_A 23 MADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK--M-------- 91 (450)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--T--------
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--C--------
Confidence 5567888889999999999999999999988763 3468888999999999999999999999887531 2
Q ss_pred HHHHHhcCcccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHH---
Q 042546 378 LRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASS---NMKSKIAF--- 451 (671)
Q Consensus 378 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~---~~~~~li~--- 451 (671)
.+..++..+..+|.+.|++++|.+.|+++.+.. +.+. ..+..++.
T Consensus 92 ----------------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~ 142 (450)
T 2y4t_A 92 ----------------------------DFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDE 142 (450)
T ss_dssp ----------------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHH
T ss_pred ----------------------------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHH
Confidence 123345666666777777777777777776543 2222 44444433
Q ss_pred ---------HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 042546 452 ---------RLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVN 522 (671)
Q Consensus 452 ---------~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~ 522 (671)
.+.+.|++++|.+.|+++.+.. +.+..++..+...|.+.|++++|.+.|+++.+ . .+.+..++..+..
T Consensus 143 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~-~~~~~~~~~~l~~ 219 (450)
T 2y4t_A 143 MQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASK-L-KNDNTEAFYKIST 219 (450)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHH-H-HCSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHH-h-CCCCHHHHHHHHH
Confidence 3666777777777777776543 34566677777777777777777777777765 2 1234566777777
Q ss_pred HHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHH------------HHHHHhcCCHHHHHHHHHHHHhCCCCCCHH----
Q 042546 523 TYCSKNRAIDACKFVHNCVREYDLKPWHTTYEEL------------IKNLLVQRGFKDALSLLCLMKDHGFPPFVD---- 586 (671)
Q Consensus 523 ~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~l------------i~~~~~~g~~~~A~~l~~~m~~~~~~p~~~---- 586 (671)
+|...|++++|...|+++... .+.+...+..+ ...|.+.|++++|++.|+++.+. .|+..
T Consensus 220 ~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~ 295 (450)
T 2y4t_A 220 LYYQLGDHELSLSEVRECLKL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTV 295 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh--CCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHH
Confidence 777777777777777777643 11223333333 56666777777777777777653 34421
Q ss_pred -H---HHHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhchHhhhccHHH
Q 042546 587 -P---FIKYVSKSGTSDDAIAFLKGMTSKRFPSMSVVLCLFAAFFQARRHSEAQDLLSKCPRYVRNHADV 652 (671)
Q Consensus 587 -t---~~~~l~~~g~~~~A~~~~~~m~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 652 (671)
. +...+.+.|++++|...++++....+.+...|..+..+|.+.|++++|.+.+++..+..+..+.+
T Consensus 296 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 365 (450)
T 2y4t_A 296 RSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQI 365 (450)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHH
Confidence 1 13445667777777777777766555566777777777777777777777777765433333333
No 10
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.84 E-value=4.7e-17 Score=174.23 Aligned_cols=398 Identities=11% Similarity=-0.011 Sum_probs=284.2
Q ss_pred CCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHH
Q 042546 141 ESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRNKMTEKFEKEGLESDLEK 220 (671)
Q Consensus 141 ~~~~~~A~~~f~~m~~~~~~~~~~~~~n~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~~~ 220 (671)
.|++++|+..|+.+.+.. ||...|..+..++.+.|++++|+..|+++.+.. +.+..++..+..++.+.|++++|..
T Consensus 19 ~g~~~~A~~~~~~al~~~---p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~ 94 (514)
T 2gw1_A 19 NKKYDDAIKYYNWALELK---EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANEGLGKFADAMF 94 (514)
T ss_dssp TSCHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hccHHHHHHHHHHHHhcC---ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 699999999999998833 789999999999999999999999999998875 3467889999999999999999998
Q ss_pred HHHHHHcCCCCChH--HHHHHHHHHHHhcC----------------------------------CChhHHHHHHhhcccc
Q 042546 221 LKGIFATGSIDNSI--EKVASRICKVVRSD----------------------------------IWGDDVERQLRDLNVT 264 (671)
Q Consensus 221 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~----------------------------------~~~~~~~~~~~~~~~~ 264 (671)
..+........+.. .............. .....+...+......
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (514)
T 2gw1_A 95 DLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPE 174 (514)
T ss_dssp HHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTSCCC
T ss_pred HHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHH
Confidence 77655554432221 11111111000000 0000011111111100
Q ss_pred --------c--ChHHHHHHHHHh----CCChHHHHHHHHHHHH-----cCCC-------CCCHHHHHHHHHHHHccCChH
Q 042546 265 --------F--SNDLVKFVVDKL----GDEPKKALIFFRWAEE-----SGFV-------KHDESSYNAMASVLGREDCID 318 (671)
Q Consensus 265 --------~--~~~~~~~~~~~~----~~~~~~A~~~f~~~~~-----~~~~-------~~~~~~~~~li~~~~~~g~~~ 318 (671)
. ....+......+ .|++++|...|+.+.. .... +.+..+|..+...+.+.|+++
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (514)
T 2gw1_A 175 LTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPL 254 (514)
T ss_dssp CCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHH
T ss_pred HHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHH
Confidence 0 111111111111 4899999999999875 2111 234567888888999999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcccHHHHHHHHHH
Q 042546 319 RFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRV 398 (671)
Q Consensus 319 ~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~ 398 (671)
+|...|+++.+.. |+..+|..+...+...|++++|...++.+.+..
T Consensus 255 ~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-------------------------------- 300 (514)
T 2gw1_A 255 GAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-------------------------------- 300 (514)
T ss_dssp HHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC--------------------------------
T ss_pred HHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC--------------------------------
Confidence 9999999988874 448888888999999999999999999887531
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 042546 399 FRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGD 478 (671)
Q Consensus 399 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~ 478 (671)
+.+..++..+...|...|++++|...|++..+.. +.+..++..+...|.+.|++++|...++++.+.. +.+.
T Consensus 301 ------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~ 372 (514)
T 2gw1_A 301 ------SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAP 372 (514)
T ss_dssp ------TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCS
T ss_pred ------cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCH
Confidence 1223456777788888999999999999888765 4467788888888999999999999999887653 3356
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCC----HHHHHHHHHHHHh---cCCHHHHHHHHHHHHHhCCCCCCHH
Q 042546 479 KMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHA----GYAIDLLVNTYCS---KNRAIDACKFVHNCVREYDLKPWHT 551 (671)
Q Consensus 479 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~----~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~~~~~p~~~ 551 (671)
.+|..+...+...|++++|.+.++++.+...-.++ ...+..+...|.. .|++++|...|+..... .+.+..
T Consensus 373 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~ 450 (514)
T 2gw1_A 373 EVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKL--DPRSEQ 450 (514)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHH--CTTCHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHh--CcccHH
Confidence 77888888888999999999988888762222222 3477788888888 88899999888888764 233566
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 042546 552 TYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPF 588 (671)
Q Consensus 552 ~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~t~ 588 (671)
+|..+...|.+.|++++|.+.+++..+. .|+....
T Consensus 451 ~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~ 485 (514)
T 2gw1_A 451 AKIGLAQMKLQQEDIDEAITLFEESADL--ARTMEEK 485 (514)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHh--ccccHHH
Confidence 7778888888888888888888888763 5655443
No 11
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.83 E-value=4.7e-17 Score=175.36 Aligned_cols=418 Identities=11% Similarity=0.015 Sum_probs=274.0
Q ss_pred CCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHH
Q 042546 141 ESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRNKMTEKFEKEGLESDLEK 220 (671)
Q Consensus 141 ~~~~~~A~~~f~~m~~~~~~~~~~~~~n~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~~~ 220 (671)
.|++++|+..|+.+.+..+ .+...|..+...+.+.|++++|++.|++..+.. +.+..++..+...+...
T Consensus 38 ~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~-------- 106 (537)
T 3fp2_A 38 AKNFNEAIKYYQYAIELDP--NEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASANESL-------- 106 (537)
T ss_dssp TTCCC-CHHHHHHHHHHCT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH--------
T ss_pred hccHHHHHHHHHHHHhhCC--CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHc--------
Confidence 5677777777777665332 356667777777777777777777777776553 22344444444444333
Q ss_pred HHHHHHcCCCCChHHHHHHHHHHHHhcCCChhHHHHHHhhcccccChHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCC
Q 042546 221 LKGIFATGSIDNSIEKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHD 300 (671)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~ 300 (671)
|+.++|...|+.+.. .|+
T Consensus 107 ----------------------------------------------------------g~~~~A~~~~~~~~~----~~~ 124 (537)
T 3fp2_A 107 ----------------------------------------------------------GNFTDAMFDLSVLSL----NGD 124 (537)
T ss_dssp ----------------------------------------------------------TCHHHHHHHHHHHC--------
T ss_pred ----------------------------------------------------------CCHHHHHHHHHHHhc----CCC
Confidence 677788888864321 222
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHHc------CCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHH
Q 042546 301 ESSYNAMASVLGREDCIDRFWKVLDEMRSK------GYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCC 374 (671)
Q Consensus 301 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~ 374 (671)
..+..+..+...+...+|...++++... ...|+..... .+....+.+.+...+.... ...+....+
T Consensus 125 --~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 196 (537)
T 3fp2_A 125 --FDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLA----SFFGIFDSHLEVSSVNTSS--NYDTAYALL 196 (537)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHH----HHHHTSCHHHHHHTSCCCC--SSCSSHHHH
T ss_pred --CChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHH----HHHHhcChHHHHHHHhhcc--ccccHHHHH
Confidence 2223344555556667777777777442 2233333322 2333334333333222211 111111111
Q ss_pred HHHHHHHHhcCcc-------cHHHHHHHHHHHHHcCCCCC--------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 042546 375 TFLLRKIVVSKQL-------DMRLFSKVVRVFRENGNVLT--------DAMLNSVLKALISVGRMGECNKILKAMEEGGF 439 (671)
Q Consensus 375 ~~ll~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~--------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 439 (671)
...+..+...... +...+..+++.+.+. .|+ ..++..+...+...|++++|...|++..+..
T Consensus 197 ~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~- 273 (537)
T 3fp2_A 197 SDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSA--NTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLH- 273 (537)
T ss_dssp HHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH--CCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC-
Confidence 1111111111100 122333344433322 222 2246667788899999999999999998864
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHH
Q 042546 440 IASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDL 519 (671)
Q Consensus 440 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~ 519 (671)
|+..+|..+...|...|++++|.+.++++.+.. +.+..+|..+...+...|++++|.+.+++..+ .. +.+...+..
T Consensus 274 -~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~-~~~~~~~~~ 349 (537)
T 3fp2_A 274 -PTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQS-LN-PENVYPYIQ 349 (537)
T ss_dssp -CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HC-TTCSHHHHH
T ss_pred -CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-hC-CCCHHHHHH
Confidence 668889999999999999999999999998765 34678899999999999999999999999987 32 224567888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CC----HH---HHHHH
Q 042546 520 LVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFP-PF----VD---PFIKY 591 (671)
Q Consensus 520 li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~-p~----~~---t~~~~ 591 (671)
+...|...|++++|...|++.... .+.+...|..+...|...|++++|.+.++++.+.... ++ .. .....
T Consensus 350 la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~ 427 (537)
T 3fp2_A 350 LACLLYKQGKFTESEAFFNETKLK--FPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATI 427 (537)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHH
Confidence 999999999999999999999875 2345678889999999999999999999998753211 11 01 11345
Q ss_pred HHhc----------CChHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhchHhhhc
Q 042546 592 VSKS----------GTSDDAIAFLKGMTSKRFPSMSVVLCLFAAFFQARRHSEAQDLLSKCPRYVRN 648 (671)
Q Consensus 592 l~~~----------g~~~~A~~~~~~m~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 648 (671)
+... |++++|...++++....+.+...|..+..+|.+.|++++|.+.+++..+..+.
T Consensus 428 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 494 (537)
T 3fp2_A 428 LARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILART 494 (537)
T ss_dssp HHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--
T ss_pred HHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Confidence 5666 99999999999999987788899999999999999999999999997664443
No 12
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.80 E-value=4e-20 Score=198.79 Aligned_cols=151 Identities=10% Similarity=0.066 Sum_probs=127.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH---CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 042546 407 TDAMLNSVLKALISVGRMGECNKILKAMEE---GGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVS 483 (671)
Q Consensus 407 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ 483 (671)
-..|||+||++||+.|++++|.++|++|.+ .|+.||.+|||+||++||+.|++++|.++|++|.+.|+.||.+|||+
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 346899999999999999999999988764 58999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCC-HHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCC------HHHHHHH
Q 042546 484 LIKGHCVAGD-LDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPW------HTTYEEL 556 (671)
Q Consensus 484 li~~~~~~g~-~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~------~~~~~~l 556 (671)
+|.++|+.|+ .++|.++|++|.+ .|+.||..+|++++.++.+.+-++.. +++.. ++.|+ ..+...|
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~-kG~~PD~vtY~~ll~~~eR~~vL~~V----rkv~P--~f~p~~~~~~~~~t~~LL 278 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQ-EGLKLQALFTAVLLSEEDRATVLKAV----HKVKP--TFSLPPQLPPPVNTSKLL 278 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHH-HTCCSHHHHHHSCCCHHHHHHHHHHH----GGGCC--CCCCCCCCCCCCCCCTTT
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHH-cCCCCChhhcccccChhhHHHHHHHH----HHhCc--ccCCCCCCcccccchHHH
Confidence 9999999998 5789999999999 99999999999999877765444433 33322 34443 3444556
Q ss_pred HHHHHhcC
Q 042546 557 IKNLLVQR 564 (671)
Q Consensus 557 i~~~~~~g 564 (671)
.+.|.+.+
T Consensus 279 ~dl~s~d~ 286 (1134)
T 3spa_A 279 RDVYAKDG 286 (1134)
T ss_dssp HHHHCCCS
T ss_pred HHHHccCC
Confidence 66666544
No 13
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.79 E-value=6.9e-16 Score=156.58 Aligned_cols=310 Identities=13% Similarity=0.055 Sum_probs=226.8
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 042546 300 DESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLR 379 (671)
Q Consensus 300 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~ 379 (671)
|+..|..+...+.+.|++++|...|++..+.. +.+..++..+...+...|++++|...|+++.+. .|
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~---------- 68 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIAL--KM---------- 68 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CT----------
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CC----------
Confidence 34566777777888888888888888887753 235777888888888888888888888877642 11
Q ss_pred HHHhcCcccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC---CCHHHHHHH-------
Q 042546 380 KIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFI---ASSNMKSKI------- 449 (671)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~---~~~~~~~~l------- 449 (671)
.+...+..+...|.+.|++++|...|++..+.. + .+...+..+
T Consensus 69 --------------------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~ 121 (359)
T 3ieg_A 69 --------------------------DFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN-PSEQEEKEAESQLVKADEMQ 121 (359)
T ss_dssp --------------------------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHH
T ss_pred --------------------------CcchHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CcccChHHHHHHHHHHHHHH
Confidence 122346667777778888888888888877653 1 233444444
Q ss_pred -----HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Q 042546 450 -----AFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTY 524 (671)
Q Consensus 450 -----i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~ 524 (671)
...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|.+.++++.+ . .+.+..++..+...|
T Consensus 122 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~-~-~~~~~~~~~~la~~~ 198 (359)
T 3ieg_A 122 RLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASK-L-KSDNTEAFYKISTLY 198 (359)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT-T-CSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHH-h-CCCCHHHHHHHHHHH
Confidence 567788888899998888887764 34677788888888888999999988888876 2 334667788888888
Q ss_pred HhcCCHHHHHHHHHHHHHhCCCCCCHHHHH------------HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH-----
Q 042546 525 CSKNRAIDACKFVHNCVREYDLKPWHTTYE------------ELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDP----- 587 (671)
Q Consensus 525 ~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~------------~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~t----- 587 (671)
...|++++|...|+...+.. +.+...+. .+...+.+.|++++|.+.+++..+. .|+...
T Consensus 199 ~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~ 274 (359)
T 3ieg_A 199 YQLGDHELSLSEVRECLKLD--QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSVAEYTVRS 274 (359)
T ss_dssp HHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHhhC--ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCchHHHHHH
Confidence 88899999988888887642 22233332 2255678899999999999988764 344322
Q ss_pred ---HHHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhchHhhhccHHHHHHH
Q 042546 588 ---FIKYVSKSGTSDDAIAFLKGMTSKRFPSMSVVLCLFAAFFQARRHSEAQDLLSKCPRYVRNHADVLNLL 656 (671)
Q Consensus 588 ---~~~~l~~~g~~~~A~~~~~~m~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~l~ 656 (671)
+...+.+.|++++|...++...+..+.+...|..+..+|.+.|++++|.+.+++..+..+..+.+...+
T Consensus 275 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l 346 (359)
T 3ieg_A 275 KERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGL 346 (359)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHH
Confidence 235567889999999999998887777888999999999999999999999998776555555544433
No 14
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.79 E-value=1.6e-15 Score=163.28 Aligned_cols=388 Identities=11% Similarity=-0.029 Sum_probs=255.7
Q ss_pred CCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHH
Q 042546 141 ESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRNKMTEKFEKEGLESDLEK 220 (671)
Q Consensus 141 ~~~~~~A~~~f~~m~~~~~~~~~~~~~n~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~~~ 220 (671)
.|++++|+..|+.+.+..+ .+...|..+...+.+.|++++|+..|+.+.. .|+.. ...+..+...+....+..
T Consensus 72 ~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~---~~~~~--~~~~~~~~~~~~~~~a~~ 144 (537)
T 3fp2_A 72 TGDLEKVIEFTTKALEIKP--DHSKALLRRASANESLGNFTDAMFDLSVLSL---NGDFD--GASIEPMLERNLNKQAMK 144 (537)
T ss_dssp HTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHC----------------CHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhcCC--chHHHHHHHHHHHHHcCCHHHHHHHHHHHhc---CCCCC--hHHHHHHHHHHHHHHHHH
Confidence 5999999999999987432 4678899999999999999999999974422 22221 112223333333333333
Q ss_pred HHHHHHcC-C-----CCChHHHHHHHHHHHHhcCCChhHHHHHHhhcccccChHHHHHHHHHh-----------CCChHH
Q 042546 221 LKGIFATG-S-----IDNSIEKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKL-----------GDEPKK 283 (671)
Q Consensus 221 ~~~~~~~~-~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~ 283 (671)
..+..... + ..+... .+..+.........+...............+...+... .+++++
T Consensus 145 ~~~~~l~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~ 220 (537)
T 3fp2_A 145 VLNENLSKDEGRGSQVLPSNT----SLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTK 220 (537)
T ss_dssp HHHHHCC-------CCCCCHH----HHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHH
T ss_pred HHHHHHHhCccccccccchHh----HHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence 22221110 0 000000 00111111111110100000001111111111111111 147889
Q ss_pred HHHHHHHHHHcCCCCCC-------HHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHH
Q 042546 284 ALIFFRWAEESGFVKHD-------ESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAV 356 (671)
Q Consensus 284 A~~~f~~~~~~~~~~~~-------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~ 356 (671)
|..+|+.+.+.. +.+ ..+|..+...+...|++++|...|++..+. .|+..+|..+...+...|++++|.
T Consensus 221 A~~~~~~~l~~~--p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~ 296 (537)
T 3fp2_A 221 STDMYHSLLSAN--TVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFF 296 (537)
T ss_dssp HHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHH
T ss_pred HHHHHHHHHHHC--CCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHH
Confidence 999999987532 233 335677778888999999999999999886 467888889999999999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 042546 357 DLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEE 436 (671)
Q Consensus 357 ~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 436 (671)
..|+++.+. .+.+..++..+...|...|++++|...|++..+
T Consensus 297 ~~~~~~~~~--------------------------------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 338 (537)
T 3fp2_A 297 KFFQKAVDL--------------------------------------NPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQS 338 (537)
T ss_dssp HHHHHHHHH--------------------------------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhcc--------------------------------------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 999988742 122345577888889999999999999999987
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC----CCCC
Q 042546 437 GGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKE----GTSH 512 (671)
Q Consensus 437 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~----g~~p 512 (671)
.. +.+...|..+...|.+.|++++|.+.++++.+.. +.+...+..+...+...|++++|.+.|+++.+.. ....
T Consensus 339 ~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 416 (537)
T 3fp2_A 339 LN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHV 416 (537)
T ss_dssp HC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSS
T ss_pred hC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHH
Confidence 65 4467889999999999999999999999998764 3456788889999999999999999999887611 1111
Q ss_pred CHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 042546 513 AGYAIDLLVNTYCSK----------NRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFP 582 (671)
Q Consensus 513 ~~~~~~~li~~~~~~----------g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~ 582 (671)
....+..+...|.+. |++++|...|++.... .+.+...|..+...|.+.|++++|.+.|++..+. .
T Consensus 417 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~ 492 (537)
T 3fp2_A 417 GIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACEL--DPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAIL--A 492 (537)
T ss_dssp TTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--C
T ss_pred HHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--C
Confidence 222344445667777 9999999999998864 2345678888889999999999999999988864 4
Q ss_pred CCHHH
Q 042546 583 PFVDP 587 (671)
Q Consensus 583 p~~~t 587 (671)
|+...
T Consensus 493 ~~~~~ 497 (537)
T 3fp2_A 493 RTMDE 497 (537)
T ss_dssp --CHH
T ss_pred CCcHH
Confidence 44433
No 15
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.76 E-value=9.6e-19 Score=188.19 Aligned_cols=138 Identities=9% Similarity=-0.011 Sum_probs=120.9
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH---HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHH
Q 042546 440 IASSNMKSKIAFRLSSAGKKDEANEFMDHME---ASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYA 516 (671)
Q Consensus 440 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~---~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~ 516 (671)
..-..|||+||++||+.|++++|.++|++|. ..|+.||.+|||+||.+||+.|++++|.++|++|.+ .|+.||.+|
T Consensus 124 ~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~-~G~~PDvvT 202 (1134)
T 3spa_A 124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKD-AGLTPDLLS 202 (1134)
T ss_dssp CHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-TTCCCCHHH
T ss_pred HhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHH-cCCCCcHHH
Confidence 3445799999999999999999999998876 458999999999999999999999999999999999 999999999
Q ss_pred HHHHHHHHHhcCC-HHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 042546 517 IDLLVNTYCSKNR-AIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPF 584 (671)
Q Consensus 517 ~~~li~~~~~~g~-~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~ 584 (671)
||+||+++|+.|+ .++|.++|++|.++ |+.||..+|++++.++.+. .+++..+++ ..++.|+
T Consensus 203 YntLI~glcK~G~~~e~A~~Ll~EM~~k-G~~PD~vtY~~ll~~~eR~----~vL~~Vrkv-~P~f~p~ 265 (1134)
T 3spa_A 203 YAAALQCMGRQDQDAGTIERCLEQMSQE-GLKLQALFTAVLLSEEDRA----TVLKAVHKV-KPTFSLP 265 (1134)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHHH-TCCSHHHHHHSCCCHHHHH----HHHHHHGGG-CCCCCCC
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHc-CCCCChhhcccccChhhHH----HHHHHHHHh-CcccCCC
Confidence 9999999999998 47899999999986 9999999999999877664 344444444 3455554
No 16
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.76 E-value=1.7e-14 Score=146.15 Aligned_cols=207 Identities=10% Similarity=-0.007 Sum_probs=129.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 042546 413 SVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAG 492 (671)
Q Consensus 413 ~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 492 (671)
.+...+...|++++|.+.|+++.+.. +.+...+..+...|...|++++|...++++.+.. +.+..++..+...+...|
T Consensus 125 ~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~ 202 (359)
T 3ieg_A 125 SQALDAFDGADYTAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLG 202 (359)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcC
Confidence 34455666777777777777766544 3456666667777777777777777777766553 345566666777777777
Q ss_pred CHHHHHHHHHHHHHcCCCCCCHHHHH------------HHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCH-----HHHHH
Q 042546 493 DLDKAADCFQKMVEKEGTSHAGYAID------------LLVNTYCSKNRAIDACKFVHNCVREYDLKPWH-----TTYEE 555 (671)
Q Consensus 493 ~~~~a~~~~~~m~~~~g~~p~~~~~~------------~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~-----~~~~~ 555 (671)
++++|.+.+++..+ .. +.+...+. .+...+.+.|++++|...+++..... |+. ..|..
T Consensus 203 ~~~~A~~~~~~a~~-~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~~~~ 277 (359)
T 3ieg_A 203 DHELSLSEVRECLK-LD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE---PSVAEYTVRSKER 277 (359)
T ss_dssp CHHHHHHHHHHHHH-HC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---CSSHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHh-hC-ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CCchHHHHHHHHH
Confidence 77777777777665 21 11122221 22455777777788777777776542 332 22444
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHH---HHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHHHH
Q 042546 556 LIKNLLVQRGFKDALSLLCLMKDHGFPPFV-DPF---IKYVSKSGTSDDAIAFLKGMTSKRFPSMSVVLCLFAAFFQ 628 (671)
Q Consensus 556 li~~~~~~g~~~~A~~l~~~m~~~~~~p~~-~t~---~~~l~~~g~~~~A~~~~~~m~~~~~p~~~~~~~l~~~~~~ 628 (671)
+...+.+.|++++|++.+++..+. .|+. ..+ ...+...|++++|...|+++.+..+.+...+..+..+...
T Consensus 278 la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~ 352 (359)
T 3ieg_A 278 ICHCFSKDEKPVEAIRICSEVLQM--EPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRL 352 (359)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence 566777777888888877777654 3432 222 4455677888888888887777666666666666665544
No 17
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.75 E-value=1.1e-16 Score=160.06 Aligned_cols=344 Identities=12% Similarity=0.071 Sum_probs=163.4
Q ss_pred CCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHH
Q 042546 141 ESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRNKMTEKFEKEGLESDLEK 220 (671)
Q Consensus 141 ~~~~~~A~~~f~~m~~~~~~~~~~~~~n~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~~~ 220 (671)
.|++++|..+++.+.. |+ +|..|..++.+.|++++|++.|.+. +|..+|..++.++...
T Consensus 16 ~~~ld~A~~fae~~~~-----~~--vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~-------- 74 (449)
T 1b89_A 16 IGNLDRAYEFAERCNE-----PA--VWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTS-------- 74 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccCHHHHHHHHHhCCC-----hH--HHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhC--------
Confidence 6899999999999966 54 9999999999999999999999753 5888999999988776
Q ss_pred HHHHHHcCCCCChHHHHHHHHHHHHhcCCChhHHHHHHhhcccccChHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCC
Q 042546 221 LKGIFATGSIDNSIEKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHD 300 (671)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~ 300 (671)
|++++|.++++...+. .++
T Consensus 75 ----------------------------------------------------------g~~EeAi~yl~~ark~---~~~ 93 (449)
T 1b89_A 75 ----------------------------------------------------------GNWEELVKYLQMARKK---ARE 93 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ----------------------------------------------------------CCHHHHHHHHHHHHHh---Ccc
Confidence 4555666655554431 566
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 042546 301 ESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRK 380 (671)
Q Consensus 301 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~ 380 (671)
+.+.+.++.+|.+.|+++++.++++ .|+..+|+.+...|...|++++|...|..+.
T Consensus 94 ~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a~----------------- 149 (449)
T 1b89_A 94 SYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVS----------------- 149 (449)
T ss_dssp ---------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHTT-----------------
T ss_pred chhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHhh-----------------
Confidence 7889999999999999999998885 3788899999999999999999999999762
Q ss_pred HHhcCcccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 042546 381 IVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKD 460 (671)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~ 460 (671)
.|..++.++.+.|++++|.+.+.++ .++.+|..++.+|...|+++
T Consensus 150 -----------------------------n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~ 194 (449)
T 1b89_A 150 -----------------------------NFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFR 194 (449)
T ss_dssp -----------------------------CHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHH
T ss_pred -----------------------------hHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHH
Confidence 1889999999999999999999988 37899999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhc--CCHHHHHHHHH
Q 042546 461 EANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSK--NRAIDACKFVH 538 (671)
Q Consensus 461 ~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~--g~~~~A~~~~~ 538 (671)
.|......+ ..++.-...++..|.+.|++++|..+++.... .. +-....|+-|--+|++- +++.+..+.|.
T Consensus 195 lA~~~~l~L-----~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~-le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~ 267 (449)
T 1b89_A 195 LAQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAALG-LE-RAHMGMFTELAILYSKFKPQKMREHLELFW 267 (449)
T ss_dssp HHHHTTTTT-----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT-ST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHS
T ss_pred HHHHHHHHH-----HhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhC-Cc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 996655542 23333455789999999999999999999865 33 44566777777777763 45556666554
Q ss_pred HHHHhCCCCC------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHhcCChHHHHHHHHHhhhC
Q 042546 539 NCVREYDLKP------WHTTYEELIKNLLVQRGFKDALSLLCLMKDH-GFPPFVDPFIKYVSKSGTSDDAIAFLKGMTSK 611 (671)
Q Consensus 539 ~m~~~~~~~p------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-~~~p~~~t~~~~l~~~g~~~~A~~~~~~m~~~ 611 (671)
.+-+++| +...|..++-.|.+.++++.|... |.++ ...-+...|.....+..+.|---+...-....
T Consensus 268 ---~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~t---m~~h~~~a~~~~~f~~~~~kv~n~elyYkai~fyl~~ 341 (449)
T 1b89_A 268 ---SRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT---MMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLEF 341 (449)
T ss_dssp ---TTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHH---HHHSTTTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHH
T ss_pred ---HHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHH---HHhCChhhhhhHHHHHHHhchhHHHHHHHHHHHHHhc
Confidence 2223333 345888899999999999998774 4443 22334577777777777766433322221211
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHh
Q 042546 612 RFPSMSVVLCLFAAFFQARRHSEAQDLLSK 641 (671)
Q Consensus 612 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 641 (671)
. | ...+-|+.++...=+...+.++|++
T Consensus 342 ~-p--~~l~~ll~~l~~~ld~~r~v~~~~~ 368 (449)
T 1b89_A 342 K-P--LLLNDLLMVLSPRLDHTRAVNYFSK 368 (449)
T ss_dssp C-G--GGHHHHHHHHGGGCCHHHHHHHHHH
T ss_pred C-H--HHHHHHHHHHHhccCcHHHHHHHHH
Confidence 1 1 1234444444444455555555544
No 18
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.73 E-value=3.5e-15 Score=149.48 Aligned_cols=289 Identities=10% Similarity=-0.004 Sum_probs=181.2
Q ss_pred CCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHH
Q 042546 298 KHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFL 377 (671)
Q Consensus 298 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~l 377 (671)
+.|...+..+...+...|++++|.++|+++.+.. +.+...+..++..+...|++++|..+++++.+.
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~------------ 85 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDL------------ 85 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHH------------
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHh------------
Confidence 4555566666666777777777777777766553 223445555666666677777777777666531
Q ss_pred HHHHHhcCcccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 042546 378 LRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVG-RMGECNKILKAMEEGGFIASSNMKSKIAFRLSSA 456 (671)
Q Consensus 378 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 456 (671)
.+.+...+..+...+...| ++++|.+.|++..+.. +.+...|..+...|...
T Consensus 86 --------------------------~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~ 138 (330)
T 3hym_B 86 --------------------------YPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVE 138 (330)
T ss_dssp --------------------------CTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHH
T ss_pred --------------------------CcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHc
Confidence 1234456667777777777 7777777777776554 34556677777777777
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 042546 457 GKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKF 536 (671)
Q Consensus 457 g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~ 536 (671)
|++++|.+.++++.+.. +.+...+..+...|...|++++|.+.+++..+ . .+.+...+..+...|...|++++|...
T Consensus 139 ~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~-~-~~~~~~~~~~l~~~~~~~~~~~~A~~~ 215 (330)
T 3hym_B 139 SEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSKLAERFFSQALS-I-APEDPFVMHEVGVVAFQNGEWKTAEKW 215 (330)
T ss_dssp TCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHT-T-CTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHH-h-CCCChHHHHHHHHHHHHcccHHHHHHH
Confidence 77777777777776653 22345555667777777777777777777765 2 233456666777777777777777777
Q ss_pred HHHHHHhCC-------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-H---HHHHHHHhcCChHHHHHHH
Q 042546 537 VHNCVREYD-------LKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFV-D---PFIKYVSKSGTSDDAIAFL 605 (671)
Q Consensus 537 ~~~m~~~~~-------~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~-~---t~~~~l~~~g~~~~A~~~~ 605 (671)
|++...... ...+..+|..+...|.+.|++++|.+.+++..+.. |+. . .+...+.+.|++++|...+
T Consensus 216 ~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~ 293 (330)
T 3hym_B 216 FLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLI--PQNASTYSAIGYIHSLMGNFENAVDYF 293 (330)
T ss_dssp HHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCSHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC--ccchHHHHHHHHHHHHhccHHHHHHHH
Confidence 776654310 12234566667777777777777777777766532 322 1 1234455667777777777
Q ss_pred HHhhhCCCCCHHHHHHHHHHH-HHcCC
Q 042546 606 KGMTSKRFPSMSVVLCLFAAF-FQARR 631 (671)
Q Consensus 606 ~~m~~~~~p~~~~~~~l~~~~-~~~g~ 631 (671)
++..+..+.+...+..+..++ ...|+
T Consensus 294 ~~al~~~p~~~~~~~~l~~~~~~~~g~ 320 (330)
T 3hym_B 294 HTALGLRRDDTFSVTMLGHCIEMYIGD 320 (330)
T ss_dssp HTTTTTCSCCHHHHHHHHHHHHTTTTC
T ss_pred HHHHccCCCchHHHHHHHHHHHHHhCc
Confidence 766666555666666666666 33444
No 19
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.73 E-value=7.7e-15 Score=146.99 Aligned_cols=240 Identities=10% Similarity=0.023 Sum_probs=126.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 042546 411 LNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAG-KKDEANEFMDHMEASGSDVGDKMWVSLIKGHC 489 (671)
Q Consensus 411 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~ 489 (671)
+..++..+...|++++|..+++++.+.. +.+...|..+...+...| ++++|.+.|++..+.. +.+...|..+...+.
T Consensus 59 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~ 136 (330)
T 3hym_B 59 LPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFA 136 (330)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHH
Confidence 3334445555566666666666655543 334455555556666666 5666666666655443 223445555666666
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 042546 490 VAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDA 569 (671)
Q Consensus 490 ~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A 569 (671)
..|++++|.+.++++.+ .. +.+...+..+...|...|++++|.+.|++.... .+.+...+..+...+...|++++|
T Consensus 137 ~~~~~~~A~~~~~~a~~-~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A 212 (330)
T 3hym_B 137 VESEHDQAMAAYFTAAQ-LM-KGCHLPMLYIGLEYGLTNNSKLAERFFSQALSI--APEDPFVMHEVGVVAFQNGEWKTA 212 (330)
T ss_dssp HHTCHHHHHHHHHHHHH-HT-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HccCHHHHHHHHHHHHH-hc-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcccHHHH
Confidence 66666666666666554 21 112334444555566666666666666665542 223345555555666666666666
Q ss_pred HHHHHHHHhCCC-------CCCH----HHHHHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 042546 570 LSLLCLMKDHGF-------PPFV----DPFIKYVSKSGTSDDAIAFLKGMTSKRFPSMSVVLCLFAAFFQARRHSEAQDL 638 (671)
Q Consensus 570 ~~l~~~m~~~~~-------~p~~----~t~~~~l~~~g~~~~A~~~~~~m~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 638 (671)
.+.+++..+... .|+. ..+...+...|++++|...+++..+..+.+...|..+..+|.+.|++++|.+.
T Consensus 213 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 292 (330)
T 3hym_B 213 EKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDY 292 (330)
T ss_dssp HHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHH
Confidence 666655543210 0111 11234445556666666666665554444555566666666666666666666
Q ss_pred HHhchHhhhccHHHHHHH
Q 042546 639 LSKCPRYVRNHADVLNLL 656 (671)
Q Consensus 639 ~~~m~~~~~~~~~~~~l~ 656 (671)
+++..+..+..+.+...+
T Consensus 293 ~~~al~~~p~~~~~~~~l 310 (330)
T 3hym_B 293 FHTALGLRRDDTFSVTML 310 (330)
T ss_dssp HHTTTTTCSCCHHHHHHH
T ss_pred HHHHHccCCCchHHHHHH
Confidence 666554444444443333
No 20
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.71 E-value=9.5e-16 Score=153.34 Aligned_cols=379 Identities=12% Similarity=0.042 Sum_probs=130.5
Q ss_pred cccccCcccccccccccCCCCCCCCCcccccCCCCccccccCCchhHHHHHhhhcCCchhHHHHHHhcCCCCCHHHHHHH
Q 042546 57 SRFSRLPICYSRLINLIDPKNPNFRNPMICSYSSEPAMEQKESDFTVVSDIFYKFSDVNDISKQLELSGVVFTHEMVLKV 136 (671)
Q Consensus 57 ~~~g~~~~A~~~f~~~~~~~~~~~wn~~i~~~~~~~~~~~~~p~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (671)
-++|++++|...|+++ +.++ +|..+..++.
T Consensus 14 ~~~~~ld~A~~fae~~-~~~~--vWs~La~A~l----------------------------------------------- 43 (449)
T 1b89_A 14 EHIGNLDRAYEFAERC-NEPA--VWSQLAKAQL----------------------------------------------- 43 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhC-CChH--HHHHHHHHHH-----------------------------------------------
Confidence 4789999999999998 6554 8888776555
Q ss_pred HHhcCCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChh
Q 042546 137 LKNLESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRNKMTEKFEKEGLES 216 (671)
Q Consensus 137 l~~~~~~~~~A~~~f~~m~~~~~~~~~~~~~n~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~ 216 (671)
. .|++++|...|.+. +|...|..++.++.+.|++++|+..++..++. .+++.+.+.++.+|.+.|+++
T Consensus 44 --~-~g~~~eAIdsfika-------~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~ 111 (449)
T 1b89_A 44 --Q-KGMVKEAIDSYIKA-------DDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIFALAKTNRLA 111 (449)
T ss_dssp -----------------------------------------------------------------------------CHH
T ss_pred --H-cCCHHHHHHHHHcC-------CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CccchhHHHHHHHHHHhCCHH
Confidence 2 47888898888653 56679999999999999999999966666554 556888999999999986655
Q ss_pred HHHHHHHHHHcCCCCChHHHHHHHHHHHHhcCCChhHHHHHHhhcccccChHHHHHHHHHhCCChHHHHHHHHHHHHcCC
Q 042546 217 DLEKLKGIFATGSIDNSIEKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGF 296 (671)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~f~~~~~~~~ 296 (671)
++. ++++
T Consensus 112 e~e------------------------------------------------------------------~f~~------- 118 (449)
T 1b89_A 112 ELE------------------------------------------------------------------EFIN------- 118 (449)
T ss_dssp HHT------------------------------------------------------------------TTTT-------
T ss_pred HHH------------------------------------------------------------------HHHc-------
Confidence 543 3332
Q ss_pred CCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHH
Q 042546 297 VKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTF 376 (671)
Q Consensus 297 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ 376 (671)
.|+..+|+.+...|...|++++|..+|..+ ..|..+..++.+.|++++|.+.+.++. +..+
T Consensus 119 -~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~~LA~~L~~Lg~yq~AVea~~KA~------~~~~--- 179 (449)
T 1b89_A 119 -GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN------STRT--- 179 (449)
T ss_dssp -CC----------------CTTTHHHHHHHT---------TCHHHHHHHHHTTTCHHHHHHHHHHHT------CHHH---
T ss_pred -CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHHHHHHHHHHhccHHHHHHHHHHcC------Cchh---
Confidence 466678888888888888888888888866 267788888888888888888887661 3344
Q ss_pred HHHHHHhcCcccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 042546 377 LLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSA 456 (671)
Q Consensus 377 ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 456 (671)
|..++.+|...|+++.|......+ ..++.-...++..|.+.
T Consensus 180 ----------------------------------Wk~v~~aCv~~~ef~lA~~~~l~L-----~~~ad~l~~lv~~Yek~ 220 (449)
T 1b89_A 180 ----------------------------------WKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDR 220 (449)
T ss_dssp ----------------------------------HHHHHHHHHHTTCHHHHHHTTTTT-----TTCHHHHHHHHHHHHHT
T ss_pred ----------------------------------HHHHHHHHHHcCcHHHHHHHHHHH-----HhCHhhHHHHHHHHHHC
Confidence 444444444444444443322221 11222222344444444
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHcCCCCC------CHHHHHHHHHHHHhcC
Q 042546 457 GKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVA--GDLDKAADCFQKMVEKEGTSH------AGYAIDLLVNTYCSKN 528 (671)
Q Consensus 457 g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~--g~~~~a~~~~~~m~~~~g~~p------~~~~~~~li~~~~~~g 528 (671)
|++++|..+++...... +.....|+-+--.|++- +++.+.++.|..- -+++| +...|.-++-.|.+.+
T Consensus 221 G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~---ini~k~~~~~~~~~~w~e~~~ly~~~~ 296 (449)
T 1b89_A 221 GYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSR---VNIPKVLRAAEQAHLWAELVFLYDKYE 296 (449)
T ss_dssp TCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTT---SCHHHHHHHHHTTTCHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH---hcCcHHHHHHHHHHHHHHHHHHHHhhc
Confidence 44444444444443322 22233333333333332 1222222222210 11222 2233445555555555
Q ss_pred CHHHHHHHHH-------------HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHhc
Q 042546 529 RAIDACKFVH-------------NCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPFIKYVSKS 595 (671)
Q Consensus 529 ~~~~A~~~~~-------------~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~t~~~~l~~~ 595 (671)
+++.|....- ++..+ ..+...|-..|.-|.... +..--.++.-+. ...|..-.+..+.+.
T Consensus 297 e~d~A~~tm~~h~~~a~~~~~f~~~~~k---v~n~elyYkai~fyl~~~-p~~l~~ll~~l~---~~ld~~r~v~~~~~~ 369 (449)
T 1b89_A 297 EYDNAIITMMNHPTDAWKEGQFKDIITK---VANVELYYRAIQFYLEFK-PLLLNDLLMVLS---PRLDHTRAVNYFSKV 369 (449)
T ss_dssp CHHHHHHHHHHSTTTTCCHHHHHHHHHH---CSSTHHHHHHHHHHHHHC-GGGHHHHHHHHG---GGCCHHHHHHHHHHT
T ss_pred hHHHHHHHHHhCChhhhhhHHHHHHHhc---hhHHHHHHHHHHHHHhcC-HHHHHHHHHHHH---hccCcHHHHHHHHHc
Confidence 5555443221 11111 223445555555444211 111112222221 134445556667777
Q ss_pred CChHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHh
Q 042546 596 GTSDDAIAFLKGMTSKRFPSMSVVLCLFAAFFQARRHSEAQDLLSK 641 (671)
Q Consensus 596 g~~~~A~~~~~~m~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 641 (671)
|.+.-+..++..+... .+..+=.++-+.|....+++.-..-++.
T Consensus 370 ~~l~l~~~yl~~v~~~--n~~~vnealn~l~ieeed~~~lr~si~~ 413 (449)
T 1b89_A 370 KQLPLVKPYLRSVQNH--NNKSVNESLNNLFITEEDYQALRTSIDA 413 (449)
T ss_dssp TCTTTTHHHHHHHHTT--CCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHh--hHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 7777778888777764 2556666777788888887765555443
No 21
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.70 E-value=6.3e-13 Score=142.63 Aligned_cols=215 Identities=8% Similarity=0.011 Sum_probs=162.4
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-------cCCHH-------HHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 042546 425 GECNKILKAMEEGGFIASSNMKSKIAFRLSS-------AGKKD-------EANEFMDHMEASGSDVGDKMWVSLIKGHCV 490 (671)
Q Consensus 425 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~-------~g~~~-------~A~~~~~~m~~~g~~~~~~~~~~li~~~~~ 490 (671)
++|..+|++..... +.+...|..+...+.+ .|+++ +|.++|++..+.-.+.+...|..++..+.+
T Consensus 255 ~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~ 333 (530)
T 2ooe_A 255 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 333 (530)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 36777888887653 4577888888888875 68877 899999998863223457889999999999
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHH-HHHhcCCHH
Q 042546 491 AGDLDKAADCFQKMVEKEGTSHA--GYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIK-NLLVQRGFK 567 (671)
Q Consensus 491 ~g~~~~a~~~~~~m~~~~g~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~-~~~~~g~~~ 567 (671)
.|++++|.++|+++.+ +.|+ ...|......+.+.|++++|.++|++..+.. ..+...|..... .+...|+.+
T Consensus 334 ~g~~~~A~~~~~~al~---~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~--~~~~~~~~~~a~~~~~~~~~~~ 408 (530)
T 2ooe_A 334 RMKYEKVHSIYNRLLA---IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA--RTRHHVYVTAALMEYYCSKDKS 408 (530)
T ss_dssp TTCHHHHHHHHHHHHH---SSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT--TCCTHHHHHHHHHHHHHTCCHH
T ss_pred cCCHHHHHHHHHHHhC---ccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc--CCchHHHHHHHHHHHHHcCChh
Confidence 9999999999999987 3444 2478888888888999999999999987632 122333332222 234689999
Q ss_pred HHHHHHHHHHhCCCCCCHHH----HHHHHHhcCChHHHHHHHHHhhhCCC--C--CHHHHHHHHHHHHHcCCHHHHHHHH
Q 042546 568 DALSLLCLMKDHGFPPFVDP----FIKYVSKSGTSDDAIAFLKGMTSKRF--P--SMSVVLCLFAAFFQARRHSEAQDLL 639 (671)
Q Consensus 568 ~A~~l~~~m~~~~~~p~~~t----~~~~l~~~g~~~~A~~~~~~m~~~~~--p--~~~~~~~l~~~~~~~g~~~~A~~~~ 639 (671)
+|.++|++..+. .|+... ++..+.+.|+.++|..+|++.....+ | ....|...+....+.|+.+.+..+.
T Consensus 409 ~A~~~~e~al~~--~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~ 486 (530)
T 2ooe_A 409 VAFKIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVE 486 (530)
T ss_dssp HHHHHHHHHHHH--HTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHH
T ss_pred HHHHHHHHHHHH--CCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999988764 465433 34555688999999999999988643 2 2458888888888999999999999
Q ss_pred HhchHhhh
Q 042546 640 SKCPRYVR 647 (671)
Q Consensus 640 ~~m~~~~~ 647 (671)
+++.+..+
T Consensus 487 ~r~~~~~p 494 (530)
T 2ooe_A 487 KRRFTAFR 494 (530)
T ss_dssp HHHHHHTH
T ss_pred HHHHHHCc
Confidence 98766544
No 22
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.69 E-value=3.8e-15 Score=151.86 Aligned_cols=287 Identities=10% Similarity=-0.066 Sum_probs=188.9
Q ss_pred cCChHHHHH-HHHHHHHcCC-CC--CHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcccH
Q 042546 314 EDCIDRFWK-VLDEMRSKGY-EM--EMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDM 389 (671)
Q Consensus 314 ~g~~~~A~~-~~~~m~~~g~-~p--~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~ 389 (671)
.|++++|.+ .|++.....- .| +...+..+...+.+.|++++|...|+++.+. .|
T Consensus 38 ~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p-------------------- 95 (368)
T 1fch_A 38 LSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQ--DP-------------------- 95 (368)
T ss_dssp --------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHS--CT--------------------
T ss_pred HHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CC--------------------
Confidence 356666666 5554332210 11 2345666677777777777777777777643 11
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 042546 390 RLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHM 469 (671)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 469 (671)
.+..++..+..+|.+.|++++|...|+++.+.. +.+..++..+...|...|++++|.+.++++
T Consensus 96 ----------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 158 (368)
T 1fch_A 96 ----------------KHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDW 158 (368)
T ss_dssp ----------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ----------------CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 122345666666777777777777777776654 446667777777777777777777777777
Q ss_pred HHCCCCCCHHHHHH---------------HHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 042546 470 EASGSDVGDKMWVS---------------LIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDAC 534 (671)
Q Consensus 470 ~~~g~~~~~~~~~~---------------li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 534 (671)
.+.... +...+.. .+..+...|++++|.+.++++.+...-.++..++..+...|.+.|++++|.
T Consensus 159 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~ 237 (368)
T 1fch_A 159 LRYTPA-YAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAV 237 (368)
T ss_dssp HHTSTT-TGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhCcC-cHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHH
Confidence 665321 1111111 233344778888888888888772222225777888888888888888888
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH-H---HHHHHHhcCChHHHHHHHHHhhh
Q 042546 535 KFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVD-P---FIKYVSKSGTSDDAIAFLKGMTS 610 (671)
Q Consensus 535 ~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~-t---~~~~l~~~g~~~~A~~~~~~m~~ 610 (671)
..|++.... .+.+...|..+...|.+.|++++|++.++++.+. .|+.. . +...+.+.|++++|...++++..
T Consensus 238 ~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 313 (368)
T 1fch_A 238 DCFTAALSV--RPNDYLLWNKLGATLANGNQSEEAVAAYRRALEL--QPGYIRSRYNLGISCINLGAHREAVEHFLEALN 313 (368)
T ss_dssp HHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHh--CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 888888764 2335677888888888888888888888887764 34432 2 24566788888888888888776
Q ss_pred CCCCC-----------HHHHHHHHHHHHHcCCHHHHHHHHHhchH
Q 042546 611 KRFPS-----------MSVVLCLFAAFFQARRHSEAQDLLSKCPR 644 (671)
Q Consensus 611 ~~~p~-----------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 644 (671)
..+.+ ...|..+..+|.+.|++++|..++++-.+
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 358 (368)
T 1fch_A 314 MQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLS 358 (368)
T ss_dssp HHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCHH
T ss_pred hCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHHH
Confidence 43322 78999999999999999999999886543
No 23
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.68 E-value=1.5e-12 Score=139.74 Aligned_cols=399 Identities=12% Similarity=0.001 Sum_probs=253.2
Q ss_pred CCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH-HHcCChhHHH
Q 042546 141 ESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRNKMTEKF-EKEGLESDLE 219 (671)
Q Consensus 141 ~~~~~~A~~~f~~m~~~~~~~~~~~~~n~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~-~~~g~~~~~~ 219 (671)
.|+++.|+.+|+.+.+..+ .+...|...+..+.+.|++++|..+|++..... |+...|...+... ...|+.+++.
T Consensus 25 ~~~~~~a~~~~e~al~~~P--~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~~~~~~~~~~~~~~a~ 100 (530)
T 2ooe_A 25 NQPIDKARKTYERLVAQFP--SSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCYLSYVRETKGKLPSYK 100 (530)
T ss_dssp SSCHHHHHHHHHHHHTTCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHHHHHHHHHTTTSTTHH
T ss_pred hCCHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHHHHHHHHHccchhhHH
Confidence 5788888888888876332 456678888888888888888888888887763 6766666655432 2334433332
Q ss_pred HHHHHHHcCCCCChHHHHHHHHHHHHhcCCChhHHHHHHhhcccccChHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC-
Q 042546 220 KLKGIFATGSIDNSIEKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVK- 298 (671)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~- 298 (671)
+ .+.++|+......|..
T Consensus 101 ~--------------------------------------------------------------~~~~~~~~al~~~g~~~ 118 (530)
T 2ooe_A 101 E--------------------------------------------------------------KMAQAYDFALDKIGMEI 118 (530)
T ss_dssp H--------------------------------------------------------------HHHHHHHHHHHHTTTST
T ss_pred H--------------------------------------------------------------HHHHHHHHHHHHCCCCc
Confidence 2 1122333333222222
Q ss_pred CCHHHHHHHHHHHHc---------cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH-------------HhCCChHHHH
Q 042546 299 HDESSYNAMASVLGR---------EDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRF-------------SERNMVKEAV 356 (671)
Q Consensus 299 ~~~~~~~~li~~~~~---------~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~-------------~~~g~~~~a~ 356 (671)
++...|...+....+ .|+++.|..+|++..+....+....|....... .+.++++.|.
T Consensus 119 ~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~ 198 (530)
T 2ooe_A 119 MSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNAR 198 (530)
T ss_dssp TCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHH
T ss_pred ccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHH
Confidence 234455555444333 455666666666665521111122332211110 1234566677
Q ss_pred HHHHHH------HhCC---CCCC--------HHHHHHHHHHHHhcCc--cc----HHHHHHHHHHHHHcCCCCCHHHHHH
Q 042546 357 DLYEFA------MACK---NKPS--------VNCCTFLLRKIVVSKQ--LD----MRLFSKVVRVFRENGNVLTDAMLNS 413 (671)
Q Consensus 357 ~l~~~m------~~~g---~~p~--------~~~~~~ll~~~~~~~~--~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (671)
.++... .+.. +.|+ ...|...+......+. .+ ...+..+++..... .+.+...|..
T Consensus 199 ~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~-~p~~~~~w~~ 277 (530)
T 2ooe_A 199 RVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLV-LGHHPDIWYE 277 (530)
T ss_dssp HHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHh-CCCCHHHHHH
Confidence 666653 2221 2333 1344444432222110 01 12333444444443 3445677888
Q ss_pred HHHHHHh-------cCCHH-------HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-H
Q 042546 414 VLKALIS-------VGRMG-------ECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVG-D 478 (671)
Q Consensus 414 li~~~~~-------~g~~~-------~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~-~ 478 (671)
....+.+ .|+++ +|..+|++..+.-.+.+...|..++..+.+.|++++|..+|+++.+. .|+ .
T Consensus 278 ~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~ 355 (530)
T 2ooe_A 278 AAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDP 355 (530)
T ss_dssp HHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCH
T ss_pred HHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCc
Confidence 8887775 79987 89999999886323456889999999999999999999999999985 454 3
Q ss_pred -HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 042546 479 -KMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNT-YCSKNRAIDACKFVHNCVREYDLKPWHTTYEEL 556 (671)
Q Consensus 479 -~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~-~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~l 556 (671)
..|...+..+.+.|+.++|.++|++..+ .. +.+...|...... +...|+.++|..+|+...+.. +-+...|..+
T Consensus 356 ~~~~~~~~~~~~~~~~~~~A~~~~~~Al~-~~-~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~--p~~~~~~~~~ 431 (530)
T 2ooe_A 356 TLVYIQYMKFARRAEGIKSGRMIFKKARE-DA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY--GDIPEYVLAY 431 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT-CT-TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH--TTCHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHh-cc-CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC--CCCHHHHHHH
Confidence 5799999999999999999999999987 32 1122233222222 346899999999999988752 2357889999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCC-CCCH-H----HHHHHHHhcCChHHHHHHHHHhhhCC
Q 042546 557 IKNLLVQRGFKDALSLLCLMKDHGF-PPFV-D----PFIKYVSKSGTSDDAIAFLKGMTSKR 612 (671)
Q Consensus 557 i~~~~~~g~~~~A~~l~~~m~~~~~-~p~~-~----t~~~~l~~~g~~~~A~~~~~~m~~~~ 612 (671)
+..+.+.|+.++|..+|++....+. .|+. . .++......|+.+.+..+++++.+..
T Consensus 432 ~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~ 493 (530)
T 2ooe_A 432 IDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAF 493 (530)
T ss_dssp HHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHT
T ss_pred HHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 9999999999999999999987642 3431 1 23555567899999999998887643
No 24
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.67 E-value=2.3e-11 Score=129.07 Aligned_cols=307 Identities=13% Similarity=0.058 Sum_probs=170.9
Q ss_pred CChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHc----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----CC
Q 042546 279 DEPKKALIFFRWAEESGFVKHDESSYNAMASVLGR----EDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSE----RN 350 (671)
Q Consensus 279 ~~~~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~----~g 350 (671)
++.++|.+.|++..+ ..+...+..|-..|.. .+++++|.+.|++..+.| +...+..+-..|.. .+
T Consensus 93 ~~~~~A~~~~~~a~~----~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~ 165 (490)
T 2xm6_A 93 QDYAQAVIWYKKAAL----KGLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTR 165 (490)
T ss_dssp CCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCC
T ss_pred CCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCC
Confidence 456666666666554 2355556666666655 566677777776666654 45556666666655 56
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCH
Q 042546 351 MVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSK--QLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALIS----VGRM 424 (671)
Q Consensus 351 ~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~ 424 (671)
+.++|.+.|++..+.| +...+..+-..|.... ..+.+.+...++...+.+ +...+..+...|.. .++.
T Consensus 166 d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~ 239 (490)
T 2xm6_A 166 DYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDY 239 (490)
T ss_dssp CHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCH
T ss_pred CHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCH
Confidence 6666666666665542 2333333333332210 112223333333333332 33455556666654 5667
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-----CCHH
Q 042546 425 GECNKILKAMEEGGFIASSNMKSKIAFRLSS----AGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVA-----GDLD 495 (671)
Q Consensus 425 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~-----g~~~ 495 (671)
++|...|++..+.| +...+..+-..|.. .++.++|.+.|++..+.| +...+..+-..|... ++.+
T Consensus 240 ~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~ 313 (490)
T 2xm6_A 240 TQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNRE 313 (490)
T ss_dssp HHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHH
T ss_pred HHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHH
Confidence 77777777666543 34455555555655 666777777777666543 344555555666555 6677
Q ss_pred HHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHH
Q 042546 496 KAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKN---RAIDACKFVHNCVREYDLKPWHTTYEELIKNLLV----QRGFKD 568 (671)
Q Consensus 496 ~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~----~g~~~~ 568 (671)
+|...|++..+ .+ +...+..+-..|.+.| +.++|.+.|++..+. .+...+..|-..|.. .++.++
T Consensus 314 ~A~~~~~~a~~-~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~~~~~ 385 (490)
T 2xm6_A 314 QAISWYTKSAE-QG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK----GEKAAQFNLGNALLQGKGVKKDEQQ 385 (490)
T ss_dssp HHHHHHHHHHH-TT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHH
T ss_pred HHHHHHHHHHh-cC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCCCHHH
Confidence 77777776666 43 3345555555555544 566677766666553 245566666666666 566777
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHh----cCChHHHHHHHHHhhhCC
Q 042546 569 ALSLLCLMKDHGFPPFVDPFIKYVSK----SGTSDDAIAFLKGMTSKR 612 (671)
Q Consensus 569 A~~l~~~m~~~~~~p~~~t~~~~l~~----~g~~~~A~~~~~~m~~~~ 612 (671)
|.+.|++..+.|...-...+...|.+ .++.++|...|+.....+
T Consensus 386 A~~~~~~A~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 386 AAIWMRKAAEQGLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTND 433 (490)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence 77777766665421111122333333 566677777776666543
No 25
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.65 E-value=3.4e-14 Score=144.78 Aligned_cols=267 Identities=9% Similarity=0.016 Sum_probs=158.0
Q ss_pred ChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHH
Q 042546 280 EPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLY 359 (671)
Q Consensus 280 ~~~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~ 359 (671)
++++|...|+.+.+.. +.+..+|..+...+.+.|++++|.+.|++..+.. +.+..++..+...+...|++++|...+
T Consensus 79 ~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~ 155 (368)
T 1fch_A 79 DLPNAVLLFEAAVQQD--PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEIL 155 (368)
T ss_dssp CHHHHHHHHHHHHHSC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 3334444444443321 3344455555555555555555555555555442 224555555555555566666666666
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 042546 360 EFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGF 439 (671)
Q Consensus 360 ~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 439 (671)
+++.+...... ..+..+-.. . +. ..+. ..+. .+..+...|++++|...|+++.+..-
T Consensus 156 ~~~~~~~~~~~-~~~~~~~~~-~--~~-----------------~~~~-~~~~-~~~~~~~~~~~~~A~~~~~~a~~~~p 212 (368)
T 1fch_A 156 RDWLRYTPAYA-HLVTPAEEG-A--GG-----------------AGLG-PSKR-ILGSLLSDSLFLEVKELFLAAVRLDP 212 (368)
T ss_dssp HHHHHTSTTTG-GGCC------------------------------------C-TTHHHHHHHHHHHHHHHHHHHHHHST
T ss_pred HHHHHhCcCcH-HHHHHHHHH-h--hh-----------------hccc-HHHH-HHHHHhhcccHHHHHHHHHHHHHhCc
Confidence 55554321111 111100000 0 00 0000 0111 12222377788888888888876541
Q ss_pred C-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHH
Q 042546 440 I-ASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAID 518 (671)
Q Consensus 440 ~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~ 518 (671)
. ++..++..+...|.+.|++++|...|+++.+.. +.+..+|..+...+...|++++|.+.|+++.+ .. +.+..++.
T Consensus 213 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~-~~-~~~~~~~~ 289 (368)
T 1fch_A 213 TSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALE-LQ-PGYIRSRY 289 (368)
T ss_dssp TSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HC-TTCHHHHH
T ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hC-CCcHHHHH
Confidence 1 147778888888888888888888888877653 34567788888888888888888888888876 22 23566778
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCCCC---------CCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 042546 519 LLVNTYCSKNRAIDACKFVHNCVREYDLK---------PWHTTYEELIKNLLVQRGFKDALSLLCL 575 (671)
Q Consensus 519 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~---------p~~~~~~~li~~~~~~g~~~~A~~l~~~ 575 (671)
.+..+|.+.|++++|...|++......-. ....+|..+..+|...|+.++|..++++
T Consensus 290 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 355 (368)
T 1fch_A 290 NLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADAR 355 (368)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHH
Confidence 88888888888888888888776531100 1157788888888888888888877763
No 26
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.64 E-value=1.2e-11 Score=131.33 Aligned_cols=346 Identities=12% Similarity=0.059 Sum_probs=259.4
Q ss_pred CCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHc----cCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChh
Q 042546 141 ESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVGV----HGLVQEFWGLVDVMKKKGYGVASHVRNKMTEKFEKEGLES 216 (671)
Q Consensus 141 ~~~~~~A~~~f~~m~~~~~~~~~~~~~n~li~~~~~----~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~ 216 (671)
.++++.|...|+...+ . -+...+..|-..|.. .++.++|+..|++..+.| +...+..+-..|....
T Consensus 56 ~~~~~~A~~~~~~a~~-~---~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~--- 125 (490)
T 2xm6_A 56 TKDLTQAMDWFRRAAE-Q---GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQQNLGVMYHEGN--- 125 (490)
T ss_dssp CCCHHHHHHHHHHHHH-T---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTS---
T ss_pred CcCHHHHHHHHHHHHH-C---CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCC---
Confidence 4788888888888776 2 355677777777777 788888888888887765 4444444443333310
Q ss_pred HHHHHHHHHHcCCCCChHHHHHHHHHHHHhcCCChhHHHHHHhhcccccChHHHHHHHHHhCCChHHHHHHHHHHHHcCC
Q 042546 217 DLEKLKGIFATGSIDNSIEKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGF 296 (671)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~f~~~~~~~~ 296 (671)
|+ .++.++|.+.|++..+
T Consensus 126 ---------------------------------------------g~--------------~~~~~~A~~~~~~a~~--- 143 (490)
T 2xm6_A 126 ---------------------------------------------GV--------------KVDKAESVKWFRLAAE--- 143 (490)
T ss_dssp ---------------------------------------------SS--------------CCCHHHHHHHHHHHHH---
T ss_pred ---------------------------------------------CC--------------CCCHHHHHHHHHHHHH---
Confidence 00 1577788888887765
Q ss_pred CCCCHHHHHHHHHHHHc----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----CCChHHHHHHHHHHHhCCCC
Q 042546 297 VKHDESSYNAMASVLGR----EDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSE----RNMVKEAVDLYEFAMACKNK 368 (671)
Q Consensus 297 ~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~----~g~~~~a~~l~~~m~~~g~~ 368 (671)
.-+...+..+-..|.. .+++++|.+.|++..+.| +...+..+-..|.. .++.++|.+.|++..+.|
T Consensus 144 -~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~-- 217 (490)
T 2xm6_A 144 -QGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG-- 217 (490)
T ss_dssp -TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--
T ss_pred -CCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC--
Confidence 3366777777777776 678888888888887764 67777777777777 788888888888887654
Q ss_pred CCHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCC
Q 042546 369 PSVNCCTFLLRKIVVSK--QLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALIS----VGRMGECNKILKAMEEGGFIAS 442 (671)
Q Consensus 369 p~~~~~~~ll~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~~~ 442 (671)
+...+..+-..+.... ..+...+...++...+.+ +...+..+-..|.. .++.++|...|++..+.| +
T Consensus 218 -~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~ 290 (490)
T 2xm6_A 218 -DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---N 290 (490)
T ss_dssp -CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---C
T ss_pred -CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---C
Confidence 4455555555555421 334556666666665553 45677777788888 899999999999998754 5
Q ss_pred HHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCCCH
Q 042546 443 SNMKSKIAFRLSSA-----GKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAG---DLDKAADCFQKMVEKEGTSHAG 514 (671)
Q Consensus 443 ~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g---~~~~a~~~~~~m~~~~g~~p~~ 514 (671)
...+..+...|... ++.++|...|++..+.| +...+..+-..|...| +.++|.++|++..+ .+ +.
T Consensus 291 ~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~-~~---~~ 363 (490)
T 2xm6_A 291 SDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAA-KG---EK 363 (490)
T ss_dssp HHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHH-TT---CH
T ss_pred HHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHH-CC---CH
Confidence 66778888888887 89999999999998865 5667777888887766 88999999999988 54 67
Q ss_pred HHHHHHHHHHHh----cCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCC
Q 042546 515 YAIDLLVNTYCS----KNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLV----QRGFKDALSLLCLMKDHGFP 582 (671)
Q Consensus 515 ~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~~~~ 582 (671)
..+..|-..|.. .++.++|.+.|+...+. + +...+..|-..|.+ .++.++|.+.|++..+.+..
T Consensus 364 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~-~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~ 435 (490)
T 2xm6_A 364 AAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQ-G---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMN 435 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhC-C---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCC
Confidence 788888888888 89999999999999874 3 56788888888888 89999999999999887643
No 27
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.64 E-value=4.1e-14 Score=144.13 Aligned_cols=265 Identities=9% Similarity=-0.077 Sum_probs=207.2
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 042546 335 EMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSV 414 (671)
Q Consensus 335 ~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 414 (671)
+...|..+...+.+.|++++|...|+++.+. .+.+..+|..+
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--------------------------------------~p~~~~~~~~l 105 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQ--------------------------------------DPGDAEAWQFL 105 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHH--------------------------------------CTTCHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------------------------------------CcCCHHHHHHH
Confidence 3455888888999999999999999988752 12234568888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-----------HHHHHH
Q 042546 415 LKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVG-----------DKMWVS 483 (671)
Q Consensus 415 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~-----------~~~~~~ 483 (671)
..+|.+.|++++|...|++..+.. +.+..+|..+...|.+.|++++|.+.|+++.+.. |+ ...+..
T Consensus 106 g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~ 182 (365)
T 4eqf_A 106 GITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVSYTNTSHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRR 182 (365)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--HHHHCC-------------
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHH
Confidence 899999999999999999998765 4568899999999999999999999999987642 22 233445
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 042546 484 LIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQ 563 (671)
Q Consensus 484 li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~ 563 (671)
+...+.+.|++++|.+.++++.+...-.++..++..+...|...|++++|.+.|++..+. .+.+..+|..+...|.+.
T Consensus 183 l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~ 260 (365)
T 4eqf_A 183 MSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTV--RPEDYSLWNRLGATLANG 260 (365)
T ss_dssp ------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHT
T ss_pred HHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHc
Confidence 678899999999999999999883222236888999999999999999999999999874 344678999999999999
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHH-H---HHHHHHhcCChHHHHHHHHHhhhCCC----C--------CHHHHHHHHHHHH
Q 042546 564 RGFKDALSLLCLMKDHGFPPFVD-P---FIKYVSKSGTSDDAIAFLKGMTSKRF----P--------SMSVVLCLFAAFF 627 (671)
Q Consensus 564 g~~~~A~~l~~~m~~~~~~p~~~-t---~~~~l~~~g~~~~A~~~~~~m~~~~~----p--------~~~~~~~l~~~~~ 627 (671)
|++++|++.++++.+. .|+.. . +...+.+.|++++|...|+++....+ + +...|..+..++.
T Consensus 261 g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 338 (365)
T 4eqf_A 261 DRSEEAVEAYTRALEI--QPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALS 338 (365)
T ss_dssp TCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHH
Confidence 9999999999998874 45532 2 35667889999999999998876321 1 3678999999999
Q ss_pred HcCCHHHHHHHHHhchH
Q 042546 628 QARRHSEAQDLLSKCPR 644 (671)
Q Consensus 628 ~~g~~~~A~~~~~~m~~ 644 (671)
..|+.+.|.++.++-++
T Consensus 339 ~~g~~~~a~~~~~~~l~ 355 (365)
T 4eqf_A 339 LMDQPELFQAANLGDLD 355 (365)
T ss_dssp HHTCHHHHHHHHTTCCG
T ss_pred HcCcHHHHHHHHHhhHH
Confidence 99999999998887543
No 28
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.63 E-value=9.3e-14 Score=141.49 Aligned_cols=160 Identities=7% Similarity=-0.028 Sum_probs=78.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 042546 412 NSVLKALISVGRMGECNKILKAMEEGGFI-ASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCV 490 (671)
Q Consensus 412 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~ 490 (671)
..+...|.+.|++++|...|+++.+..-. ++..+|..+...|.+.|++++|.+.|++..+.. +.+..+|..+...|.+
T Consensus 181 ~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~ 259 (365)
T 4eqf_A 181 RRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLAN 259 (365)
T ss_dssp --------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 33444445555555555555555543211 134555555555555555555555555555432 2244555555555555
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC----------CCCHHHHHHHHHHH
Q 042546 491 AGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDL----------KPWHTTYEELIKNL 560 (671)
Q Consensus 491 ~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~----------~p~~~~~~~li~~~ 560 (671)
.|++++|.+.|+++.+ . .+.+..++..+..+|.+.|++++|...|++......- ..+...|..+..++
T Consensus 260 ~g~~~~A~~~~~~al~-~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 337 (365)
T 4eqf_A 260 GDRSEEAVEAYTRALE-I-QPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIAL 337 (365)
T ss_dssp TTCHHHHHHHHHHHHH-H-CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHh-c-CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHH
Confidence 5555555555555554 1 1122445555555555556666666555555432100 00245566666666
Q ss_pred HhcCCHHHHHHHHH
Q 042546 561 LVQRGFKDALSLLC 574 (671)
Q Consensus 561 ~~~g~~~~A~~l~~ 574 (671)
...|+.+.+.++.+
T Consensus 338 ~~~g~~~~a~~~~~ 351 (365)
T 4eqf_A 338 SLMDQPELFQAANL 351 (365)
T ss_dssp HHHTCHHHHHHHHT
T ss_pred HHcCcHHHHHHHHH
Confidence 66666666665544
No 29
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.62 E-value=1.5e-13 Score=134.57 Aligned_cols=270 Identities=10% Similarity=-0.021 Sum_probs=201.0
Q ss_pred CChHHHHHHHHHHHHcCCCCCCH--HHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHH
Q 042546 279 DEPKKALIFFRWAEESGFVKHDE--SSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAV 356 (671)
Q Consensus 279 ~~~~~A~~~f~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~ 356 (671)
|.+..|+..++.... ..|+. ...-.+...|...|++++|...++. .-.|+..++..+...+...++.++|+
T Consensus 13 g~y~~ai~~~~~~~~---~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~~A~ 85 (291)
T 3mkr_A 13 GSYQQCINEAQRVKP---SSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRDAIV 85 (291)
T ss_dssp TCHHHHHHHHHHSCC---CSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHHHHH
T ss_pred HHHHHHHHHHHhccc---CCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHHHHH
Confidence 889999888876532 23443 3556677889999999999886654 23567788888888899999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 042546 357 DLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEE 436 (671)
Q Consensus 357 ~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 436 (671)
+.++++...+..|+.. ..+..+...|.+.|++++|.+.+++
T Consensus 86 ~~l~~ll~~~~~P~~~------------------------------------~~~~~la~~~~~~g~~~~Al~~l~~--- 126 (291)
T 3mkr_A 86 AELDREMSRSVDVTNT------------------------------------TFLLMAASIYFYDQNPDAALRTLHQ--- 126 (291)
T ss_dssp HHHHHHHHSCCCCSCH------------------------------------HHHHHHHHHHHHTTCHHHHHHHHTT---
T ss_pred HHHHHHHhcccCCCCH------------------------------------HHHHHHHHHHHHCCCHHHHHHHHhC---
Confidence 9999888655555432 2345555778888999999998887
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH---HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCC
Q 042546 437 GGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMW---VSLIKGHCVAGDLDKAADCFQKMVEKEGTSHA 513 (671)
Q Consensus 437 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~---~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~ 513 (671)
+.+...+..+...|.+.|++++|.+.|+++.+.. |+.... ...+..+...|++++|..+|+++.+ . .+.+
T Consensus 127 ---~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~-~-~p~~ 199 (291)
T 3mkr_A 127 ---GDSLECMAMTVQILLKLDRLDLARKELKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMAD-K-CSPT 199 (291)
T ss_dssp ---CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHH-H-SCCC
T ss_pred ---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHH-h-CCCc
Confidence 4677888888999999999999999999988763 553321 2233444456889999999999987 3 4557
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHhCCCCCCHHHHHHHH
Q 042546 514 GYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKD-ALSLLCLMKDHGFPPFVDPFIKYV 592 (671)
Q Consensus 514 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~-A~~l~~~m~~~~~~p~~~t~~~~l 592 (671)
...++.+..+|.+.|++++|...|++.... -+-+..++..++..+...|+.++ +.++++++.+ +.|+........
T Consensus 200 ~~~~~~la~~~~~~g~~~eA~~~l~~al~~--~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~--~~P~~~~~~d~~ 275 (291)
T 3mkr_A 200 LLLLNGQAACHMAQGRWEAAEGVLQEALDK--DSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKD--AHRSHPFIKEYR 275 (291)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH--HCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH--hCCCChHHHHHH
Confidence 788888888999999999999999988764 23356678888888888888865 5678888775 468777777766
Q ss_pred HhcCChHHHHHHH
Q 042546 593 SKSGTSDDAIAFL 605 (671)
Q Consensus 593 ~~~g~~~~A~~~~ 605 (671)
.+.+.++++..-|
T Consensus 276 ~~~~~fd~~~~~~ 288 (291)
T 3mkr_A 276 AKENDFDRLVLQY 288 (291)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc
Confidence 6666666655443
No 30
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.61 E-value=4.9e-11 Score=133.11 Aligned_cols=447 Identities=12% Similarity=0.128 Sum_probs=296.6
Q ss_pred CCHHHHHHHHHhcCCChHHHHHHHHHHhh---cCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCC--CCCHHHH
Q 042546 128 FTHEMVLKVLKNLESSPDEARRFFNWVLE---KESERLSSKTYNLMLRIVGVHGLVQEFWGLVDVMKKKGY--GVASHVR 202 (671)
Q Consensus 128 ~~~~~~~~~l~~~~~~~~~A~~~f~~m~~---~~~~~~~~~~~n~li~~~~~~g~~~~a~~l~~~m~~~g~--~p~~~t~ 202 (671)
-++.+...+|.. .+ +-=+.+.+|... -....|+.++ ..+.+|...|.+.+|++++++....+- .-+...-
T Consensus 951 ~d~~lW~~vl~~-~n--~~RR~Lidqv~a~aL~e~~~PeeVs--~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~Lq 1025 (1630)
T 1xi4_A 951 KDPELWGSVLLE-SN--PYRRPLIDQVVQTALSETQDPEEVS--VTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQ 1025 (1630)
T ss_pred cCHHHHHHHhcC-Cc--HHHHHHHHHHHHhhcccccCHHHhH--HHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHH
Confidence 456666677644 22 333455555332 1123355554 578888899999999999999884421 1233444
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHcCCCCChHHHHHHHHHHHHhcCCChhHHHHHHhhcccccChHHHHHHHHHhCCChH
Q 042546 203 NKMTEKFEKEGLESDLEKLKGIFATGSIDNSIEKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPK 282 (671)
Q Consensus 203 ~~ll~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (671)
+.++.+..+. +..........++ ..+. ..+...+.....-++......+.+ .....+..++.. .++++
T Consensus 1026 nlLi~tAIka-D~~Rv~eyI~kLd---~~d~-----~eIA~Iai~lglyEEAf~IYkKa~--~~~~A~~VLie~-i~nld 1093 (1630)
T 1xi4_A 1026 NLLILTAIKA-DRTRVMEYINRLD---NYDA-----PDIANIAISNELFEEAFAIFRKFD--VNTSAVQVLIEH-IGNLD 1093 (1630)
T ss_pred HHHHHHHHHh-ChhhHHHHHHHhh---hccH-----HHHHHHHHhCCCHHHHHHHHHHcC--CHHHHHHHHHHH-HhhHH
Confidence 5566655555 2233333333222 1111 111122222233333334444433 122222333321 17889
Q ss_pred HHHHHHHHHHHcCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHH
Q 042546 283 KALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFA 362 (671)
Q Consensus 283 ~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m 362 (671)
+|.++.++. -+..+|..+-.++.+.|++++|.+.|.+- -|...|..++.+|.+.|++++|.+.+...
T Consensus 1094 rAiE~Aerv-------n~p~vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mA 1160 (1630)
T 1xi4_A 1094 RAYEFAERC-------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMA 1160 (1630)
T ss_pred HHHHHHHhc-------CCHHHHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999988854 34788999999999999999999999663 37889999999999999999999999987
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 042546 363 MACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIAS 442 (671)
Q Consensus 363 ~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~ 442 (671)
++.. ++....+.+..+|++.++.+ .....+ ..++...|..+-..|...|++++|..+|...
T Consensus 1161 rk~~--~e~~Idt~LafaYAKl~rle--ele~fI-------~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA-------- 1221 (1630)
T 1xi4_A 1161 RKKA--RESYVETELIFALAKTNRLA--ELEEFI-------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-------- 1221 (1630)
T ss_pred Hhhc--ccccccHHHHHHHHhhcCHH--HHHHHH-------hCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh--------
Confidence 7654 33333335888888886544 222222 2445567778999999999999999999985
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 042546 443 SNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVN 522 (671)
Q Consensus 443 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~ 522 (671)
..|..+...|.+.|++++|.+.+++. .+..+|..+-.+|...|++..|......+.. +...+..++.
T Consensus 1222 -~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~cgl~Iiv------~~deLeeli~ 1288 (1630)
T 1xi4_A 1222 -SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIVV------HADELEELIN 1288 (1630)
T ss_pred -hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHhhhc------CHHHHHHHHH
Confidence 48999999999999999999999876 4678999999999999999999887654333 5666789999
Q ss_pred HHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHhCCCCCC---------HHHHHHH
Q 042546 523 TYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLV--QRGFKDALSLLCLMKDHGFPPF---------VDPFIKY 591 (671)
Q Consensus 523 ~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~--~g~~~~A~~l~~~m~~~~~~p~---------~~t~~~~ 591 (671)
.|.+.|.+++|..+++...... .-+...|+-|...|++ .++..+++++|..-. ++.|- ..-++-.
T Consensus 1289 yYe~~G~feEAI~LlE~aL~Le--raH~gmftELaiLyaKy~peklmEhlk~f~~ri--ni~k~~r~~e~~~lW~elv~L 1364 (1630)
T 1xi4_A 1289 YYQDRGYFEELITMLEAALGLE--RAHMGMFTELAILYSKFKPQKMREHLELFWSRV--NIPKVLRAAEQAHLWAELVFL 1364 (1630)
T ss_pred HHHHcCCHHHHHHHHHHHhccC--hhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhc--ccchHhHHHHHHHHHHHHHHH
Confidence 9999999999999997775421 2233466666666665 455666666665332 22221 1223667
Q ss_pred HHhcCChHHHHHH--------H-----HHhhhCCCCCHHHHHHHHHHHHHcC---------------CHHHHHHHHHh
Q 042546 592 VSKSGTSDDAIAF--------L-----KGMTSKRFPSMSVVLCLFAAFFQAR---------------RHSEAQDLLSK 641 (671)
Q Consensus 592 l~~~g~~~~A~~~--------~-----~~m~~~~~p~~~~~~~l~~~~~~~g---------------~~~~A~~~~~~ 641 (671)
|.+.|+++.|... | +.... ...|...|.-.+.-|...+ +.+.+.++|.+
T Consensus 1365 Y~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~-kv~n~elyykai~Fyl~~~P~~lndLl~~l~~rlD~~R~V~l~~~ 1441 (1630)
T 1xi4_A 1365 YDKYEEYDNAIITMMNHPTDAWKEGQFKDIIT-KVANVELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFSK 1441 (1630)
T ss_pred HHhcccHHHHHHHHHhccHhhhhhHHHHHHhc-ccccHHHHHHHHHHHHhhChHHHHHHHHHhhhcCChHHHHHHHHH
Confidence 7889999988732 2 12111 2357888888888888777 77888888874
No 31
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.61 E-value=2.1e-13 Score=136.25 Aligned_cols=263 Identities=11% Similarity=-0.065 Sum_probs=208.3
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 042546 336 METCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVL 415 (671)
Q Consensus 336 ~~t~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li 415 (671)
...+..+...+...|++++|..+|+++.+. . +.+...+..+.
T Consensus 21 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~------------------------------------~~~~~~~~~l~ 62 (327)
T 3cv0_A 21 HENPMEEGLSMLKLANLAEAALAFEAVCQA--A------------------------------------PEREEAWRSLG 62 (327)
T ss_dssp SSCHHHHHHHHHHTTCHHHHHHHHHHHHHH--C------------------------------------TTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHh--C------------------------------------CCCHHHHHHHH
Confidence 344566777888899999999999988742 1 12344577788
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH-----------
Q 042546 416 KALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSL----------- 484 (671)
Q Consensus 416 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l----------- 484 (671)
.+|.+.|++++|...|+++.+.. +.+..++..+...|...|++++|.+.++++.+... .+...+..+
T Consensus 63 ~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 140 (327)
T 3cv0_A 63 LTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEHNANAALASLRAWLLSQP-QYEQLGSVNLQADVDIDDLN 140 (327)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTST-TTTTC---------------
T ss_pred HHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-ccHHHHHHHhHHHHHHHHHH
Confidence 88999999999999999998765 45788899999999999999999999999987632 122222222
Q ss_pred ---HH-HHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 042546 485 ---IK-GHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNL 560 (671)
Q Consensus 485 ---i~-~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~ 560 (671)
.. .+...|++++|.+.++++.+ .. +.+..++..+...|.+.|++++|.+.+++.... .+.+...|..+...+
T Consensus 141 ~~~~~~~~~~~~~~~~A~~~~~~~~~-~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~ 216 (327)
T 3cv0_A 141 VQSEDFFFAAPNEYRECRTLLHAALE-MN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVEL--RPDDAQLWNKLGATL 216 (327)
T ss_dssp -----CCTTSHHHHHHHHHHHHHHHH-HS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHhHHHHHcccHHHHHHHHHHHHh-hC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHH
Confidence 22 37788999999999999987 32 336788999999999999999999999999874 234577899999999
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCH-HH---HHHHHHhcCChHHHHHHHHHhhhCCCC------------CHHHHHHHHH
Q 042546 561 LVQRGFKDALSLLCLMKDHGFPPFV-DP---FIKYVSKSGTSDDAIAFLKGMTSKRFP------------SMSVVLCLFA 624 (671)
Q Consensus 561 ~~~g~~~~A~~l~~~m~~~~~~p~~-~t---~~~~l~~~g~~~~A~~~~~~m~~~~~p------------~~~~~~~l~~ 624 (671)
...|++++|.+.++++.+. .|+. .. +...+...|++++|...++++....+. +...|..+..
T Consensus 217 ~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 294 (327)
T 3cv0_A 217 ANGNRPQEALDAYNRALDI--NPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRM 294 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHH
Confidence 9999999999999998864 3443 22 256667899999999999998875443 5788999999
Q ss_pred HHHHcCCHHHHHHHHHhchH
Q 042546 625 AFFQARRHSEAQDLLSKCPR 644 (671)
Q Consensus 625 ~~~~~g~~~~A~~~~~~m~~ 644 (671)
+|.+.|++++|.+++++..+
T Consensus 295 ~~~~~g~~~~A~~~~~~~l~ 314 (327)
T 3cv0_A 295 LLNVMNRPDLVELTYAQNVE 314 (327)
T ss_dssp HHHHTTCHHHHHHHTTCCSH
T ss_pred HHHhcCCHHHHHHHHHHHHH
Confidence 99999999999999987654
No 32
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.61 E-value=1.9e-13 Score=133.71 Aligned_cols=229 Identities=14% Similarity=0.038 Sum_probs=149.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHh
Q 042546 412 NSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVG-DKMWVSLIKGHCV 490 (671)
Q Consensus 412 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~-~~~~~~li~~~~~ 490 (671)
..+..+|...|++++|...++.. -+|+..++..+...+...|+.++|.+.++++...+..|+ ...+..+...+..
T Consensus 38 ~~l~r~yi~~g~~~~al~~~~~~----~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~ 113 (291)
T 3mkr_A 38 VFLYRAYLAQRKYGVVLDEIKPS----SAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFY 113 (291)
T ss_dssp HHHHHHHHHTTCHHHHHHHSCTT----SCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHhccc----CChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHH
Confidence 34456777777777777655442 255666777777777777777888887777776654453 4445555577777
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHH---HHHHHHHHhcCCHH
Q 042546 491 AGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTY---EELIKNLLVQRGFK 567 (671)
Q Consensus 491 ~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~---~~li~~~~~~g~~~ 567 (671)
.|++++|.+.+++ ..+...+..+...|.+.|+.++|.+.|+++... .|+.... .+++..+...|+++
T Consensus 114 ~g~~~~Al~~l~~-------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~---~p~~~~~~l~~a~~~l~~~~~~~~ 183 (291)
T 3mkr_A 114 DQNPDAALRTLHQ-------GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ---DEDATLTQLATAWVSLAAGGEKLQ 183 (291)
T ss_dssp TTCHHHHHHHHTT-------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHCTTHHH
T ss_pred CCCHHHHHHHHhC-------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh---CcCcHHHHHHHHHHHHHhCchHHH
Confidence 7888877777765 346667777777777778888888877777653 3443211 12223333457778
Q ss_pred HHHHHHHHHHhCCCCCCHHH-H---HHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHH-HHHHHHhc
Q 042546 568 DALSLLCLMKDHGFPPFVDP-F---IKYVSKSGTSDDAIAFLKGMTSKRFPSMSVVLCLFAAFFQARRHSE-AQDLLSKC 642 (671)
Q Consensus 568 ~A~~l~~~m~~~~~~p~~~t-~---~~~l~~~g~~~~A~~~~~~m~~~~~p~~~~~~~l~~~~~~~g~~~~-A~~~~~~m 642 (671)
+|..+|+++.+. .|+... + ...+.+.|++++|+..|+++....+.+..++..++..+...|+.++ +.+++++.
T Consensus 184 eA~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~ 261 (291)
T 3mkr_A 184 DAYYIFQEMADK--CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQL 261 (291)
T ss_dssp HHHHHHHHHHHH--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 888888777764 343322 2 3345677888888888877777666677777777777777777765 46777776
Q ss_pred hHhhhccHHHHHHH
Q 042546 643 PRYVRNHADVLNLL 656 (671)
Q Consensus 643 ~~~~~~~~~~~~l~ 656 (671)
....+.++.+.++.
T Consensus 262 ~~~~P~~~~~~d~~ 275 (291)
T 3mkr_A 262 KDAHRSHPFIKEYR 275 (291)
T ss_dssp HHHCTTCHHHHHHH
T ss_pred HHhCCCChHHHHHH
Confidence 65555555544443
No 33
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.59 E-value=6.1e-13 Score=132.85 Aligned_cols=263 Identities=10% Similarity=0.049 Sum_probs=203.7
Q ss_pred CCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHH
Q 042546 278 GDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVD 357 (671)
Q Consensus 278 ~~~~~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~ 357 (671)
.|++++|..+|+.+.+.. +.+..+|..+...+.+.|++++|.+.|++..+.. +.+..++..+...+...|++++|.+
T Consensus 34 ~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~ 110 (327)
T 3cv0_A 34 LANLAEAALAFEAVCQAA--PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEHNANAALA 110 (327)
T ss_dssp TTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 499999999999987643 5678899999999999999999999999998873 3468899999999999999999999
Q ss_pred HHHHHHhCCCCCCHH-HHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCCCCHHHHHHHHH--HHHhcCCHHHHHHHHHHH
Q 042546 358 LYEFAMACKNKPSVN-CCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLK--ALISVGRMGECNKILKAM 434 (671)
Q Consensus 358 l~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~--~~~~~g~~~~A~~~~~~m 434 (671)
.++++.+.. |+.. .+..+.. ..++......+.. .+...|++++|.+.++++
T Consensus 111 ~~~~~~~~~--~~~~~~~~~~~~------------------------~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 164 (327)
T 3cv0_A 111 SLRAWLLSQ--PQYEQLGSVNLQ------------------------ADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAA 164 (327)
T ss_dssp HHHHHHHTS--TTTTTC--------------------------------------------CCTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHhC--CccHHHHHHHhH------------------------HHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHH
Confidence 999998642 2211 1111100 0011111112212 367788999999999998
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCH
Q 042546 435 EEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAG 514 (671)
Q Consensus 435 ~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~ 514 (671)
.+.. +.+..++..+...|.+.|++++|.+.++++.+.. +.+..+|..+...+...|++++|.+.++++.+ .. +.+.
T Consensus 165 ~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~-~~~~ 240 (327)
T 3cv0_A 165 LEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALD-IN-PGYV 240 (327)
T ss_dssp HHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HC-TTCH
T ss_pred HhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-cC-CCCH
Confidence 8765 4578889999999999999999999999988764 34678899999999999999999999999887 32 3357
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCC-------------CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 042546 515 YAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKP-------------WHTTYEELIKNLLVQRGFKDALSLLCLM 576 (671)
Q Consensus 515 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p-------------~~~~~~~li~~~~~~g~~~~A~~l~~~m 576 (671)
.++..+...|.+.|++++|.+.|++.... .| +...|..+...+.+.|+.++|.+++++.
T Consensus 241 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 241 RVMYNMAVSYSNMSQYDLAAKQLVRAIYM---QVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---HTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHh---CCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 78888999999999999999999988763 23 3678888888999999999998887643
No 34
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.57 E-value=1.2e-11 Score=130.48 Aligned_cols=381 Identities=10% Similarity=-0.048 Sum_probs=205.9
Q ss_pred CCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHc-----C--CCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHcCCCC
Q 042546 160 ERLSSKTYNLMLRIVGVHGLVQEFWGLVDVMKKK-----G--YGV-ASHVRNKMTEKFEKEGLESDLEKLKGIFATGSID 231 (671)
Q Consensus 160 ~~~~~~~~n~li~~~~~~g~~~~a~~l~~~m~~~-----g--~~p-~~~t~~~ll~~~~~~g~~~~~~~~~~~~~~~~~~ 231 (671)
.......||.+-..+...|+.++|++.|++-.+. + ..| ...+|+.+-..|...|++++|....+
T Consensus 47 ~~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~-------- 118 (472)
T 4g1t_A 47 REFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVD-------- 118 (472)
T ss_dssp ---CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHH--------
T ss_pred ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHH--------
Confidence 3345678999999999999999999999886442 1 122 35678888888888877776654221
Q ss_pred ChHHHHHHHHHHHHhcCCChhHHHHHHhhcccccChHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Q 042546 232 NSIEKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVL 311 (671)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~li~~~ 311 (671)
+|+++........ -.....+++.+-.++
T Consensus 119 ---------------------------------------------------ka~~i~~~~~~~~-~~~~~~~~~~~g~~~ 146 (472)
T 4g1t_A 119 ---------------------------------------------------KVKHVCEKFSSPY-RIESPELDCEEGWTR 146 (472)
T ss_dssp ---------------------------------------------------HHHHHHHHSCCSS-CCCCHHHHHHHHHHH
T ss_pred ---------------------------------------------------HHHHHhHhccccc-chhhHHHHHHHHHHH
Confidence 1222211111000 011234444444444
Q ss_pred Hcc--CChHHHHHHHHHHHHcCCCCC-HHHHHHHHHH---HHhCCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhc
Q 042546 312 GRE--DCIDRFWKVLDEMRSKGYEME-METCVKVLGR---FSERNMVKEAVDLYEFAMACKNKPS-VNCCTFLLRKIVVS 384 (671)
Q Consensus 312 ~~~--g~~~~A~~~~~~m~~~g~~p~-~~t~~~li~~---~~~~g~~~~a~~l~~~m~~~g~~p~-~~~~~~ll~~~~~~ 384 (671)
.+. +++++|.+.|++..+. .|+ ...+..+... +...++.++|++.+++..+. .|+ ...+..+-..+..
T Consensus 147 ~~~~~~~y~~A~~~~~kal~~--~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l--~p~~~~~~~~l~~~~~~- 221 (472)
T 4g1t_A 147 LKCGGNQNERAKVCFEKALEK--KPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRL--NPDNQYLKVLLALKLHK- 221 (472)
T ss_dssp HHHCTTHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHH--CSSCHHHHHHHHHHHHH-
T ss_pred HHHccccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhc--CCcchHHHHHHHHHHHH-
Confidence 433 3567777777776654 233 3333333333 33456666677766665532 222 1111111111111
Q ss_pred CcccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 042546 385 KQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANE 464 (671)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 464 (671)
.+...|+.++|.+.+++..... +.+..++..+...|.+.|++++|..
T Consensus 222 --------------------------------~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~ 268 (472)
T 4g1t_A 222 --------------------------------MREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIE 268 (472)
T ss_dssp --------------------------------CC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred --------------------------------HHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHH
Confidence 1122344555666665555433 3445555556666666666666666
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHh-------------------cCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHH
Q 042546 465 FMDHMEASGSDVGDKMWVSLIKGHCV-------------------AGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYC 525 (671)
Q Consensus 465 ~~~~m~~~g~~~~~~~~~~li~~~~~-------------------~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~ 525 (671)
.+++..+.. +-+..++..+...|.. .+..++|...+++..+ .. +.+..++..+...|.
T Consensus 269 ~~~~al~~~-p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~-~~-~~~~~~~~~lg~~~~ 345 (472)
T 4g1t_A 269 LLKKALEYI-PNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADE-AN-DNLFRVCSILASLHA 345 (472)
T ss_dssp HHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHH-HC-TTTCCCHHHHHHHHH
T ss_pred HHHHHHHhC-CChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhh-cC-CchhhhhhhHHHHHH
Confidence 666655442 1233334433333321 2235677888887766 22 223446777888999
Q ss_pred hcCCHHHHHHHHHHHHHhCCCCCCHHH----HHHHHH-HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHhcCChHH
Q 042546 526 SKNRAIDACKFVHNCVREYDLKPWHTT----YEELIK-NLLVQRGFKDALSLLCLMKDHGFPPFVDPFIKYVSKSGTSDD 600 (671)
Q Consensus 526 ~~g~~~~A~~~~~~m~~~~~~~p~~~~----~~~li~-~~~~~g~~~~A~~l~~~m~~~~~~p~~~t~~~~l~~~g~~~~ 600 (671)
..|++++|...|++.... .|+... +..+.. .+.+.|+.++|++.|++..+ +.|+.... .+..+.
T Consensus 346 ~~~~~~~A~~~~~kaL~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~--i~~~~~~~------~~~~~~ 414 (472)
T 4g1t_A 346 LADQYEEAEYYFQKEFSK---ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK--INQKSREK------EKMKDK 414 (472)
T ss_dssp HTTCHHHHHHHHHHHHHS---CCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH--SCCCCHHH------HHHHHH
T ss_pred HhccHHHHHHHHHHHHhc---CCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCcccHHH------HHHHHH
Confidence 999999999999998763 333322 222222 23468999999999998886 45654322 222345
Q ss_pred HHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhchHhhhccHHH
Q 042546 601 AIAFLKGMTSKRFPSMSVVLCLFAAFFQARRHSEAQDLLSKCPRYVRNHADV 652 (671)
Q Consensus 601 A~~~~~~m~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 652 (671)
+.++++......+.+..+|..+..+|...|++++|.+.|++..+.....|.+
T Consensus 415 l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a 466 (472)
T 4g1t_A 415 LQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSA 466 (472)
T ss_dssp HHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC-------------------
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcH
Confidence 5666777677677788999999999999999999999999987654444433
No 35
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.56 E-value=2.7e-10 Score=127.26 Aligned_cols=413 Identities=13% Similarity=0.085 Sum_probs=281.6
Q ss_pred CCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHcCCC---CChHHH
Q 042546 162 LSSKTYNLMLRIVGVHGLVQEFWGLVDVMKKKGY--GVASHVRNKMTEKFEKEGLESDLEKLKGIFATGSI---DNSIEK 236 (671)
Q Consensus 162 ~~~~~~n~li~~~~~~g~~~~a~~l~~~m~~~g~--~p~~~t~~~ll~~~~~~g~~~~~~~~~~~~~~~~~---~~~~~~ 236 (671)
.|...|+.++.- .. +-=.++.+.-....+ .-|+.-....+++|...|...++.++.+-..-.+. .+.-..
T Consensus 951 ~d~~lW~~vl~~---~n--~~RR~Lidqv~a~aL~e~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~Lq 1025 (1630)
T 1xi4_A 951 KDPELWGSVLLE---SN--PYRRPLIDQVVQTALSETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQ 1025 (1630)
T ss_pred cCHHHHHHHhcC---Cc--HHHHHHHHHHHHhhcccccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHH
Confidence 577789887732 11 222234443332211 22444456778899999999998887765442222 111111
Q ss_pred HHHHHHHHHhcCCChhHHHHHHhhcccccChHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHccCC
Q 042546 237 VASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDC 316 (671)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~g~ 316 (671)
.. ++....+. ........+.+.+-...+..-..+.. .|.+++|..+|++.. -.....+.++. ..++
T Consensus 1026 nl-Li~tAIka--D~~Rv~eyI~kLd~~d~~eIA~Iai~--lglyEEAf~IYkKa~------~~~~A~~VLie---~i~n 1091 (1630)
T 1xi4_A 1026 NL-LILTAIKA--DRTRVMEYINRLDNYDAPDIANIAIS--NELFEEAFAIFRKFD------VNTSAVQVLIE---HIGN 1091 (1630)
T ss_pred HH-HHHHHHHh--ChhhHHHHHHHhhhccHHHHHHHHHh--CCCHHHHHHHHHHcC------CHHHHHHHHHH---HHhh
Confidence 11 22222222 22334444444442222222222233 399999999999752 23333444543 7788
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcccHHHHHHHH
Q 042546 317 IDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVV 396 (671)
Q Consensus 317 ~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~ 396 (671)
+++|.++.++.. +..+|..+-.++...|++++|.+.|.+. -|...|.-+...+.+.|+.+ .+.+.+
T Consensus 1092 ldrAiE~Aervn------~p~vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyE--EAIeyL 1157 (1630)
T 1xi4_A 1092 LDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWE--ELVKYL 1157 (1630)
T ss_pred HHHHHHHHHhcC------CHHHHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHH--HHHHHH
Confidence 999999998652 5789999999999999999999999764 46777888899998888544 444555
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 042546 397 RVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDV 476 (671)
Q Consensus 397 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~ 476 (671)
....+.. ++....+.++.+|++.+++++..... + .++...|..+...|...|++++|..+|...
T Consensus 1158 ~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA------- 1221 (1630)
T 1xi4_A 1158 QMARKKA--RESYVETELIFALAKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV------- 1221 (1630)
T ss_pred HHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh-------
Confidence 4444433 33334446999999999988644442 2 467778888999999999999999999984
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 042546 477 GDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEEL 556 (671)
Q Consensus 477 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~l 556 (671)
..|..+...|.+.|++++|.+.+++.. +..+|..+-.+|...|++..|......+. .+...+..+
T Consensus 1222 --~ny~rLA~tLvkLge~q~AIEaarKA~-------n~~aWkev~~acve~~Ef~LA~~cgl~Ii------v~~deLeel 1286 (1630)
T 1xi4_A 1222 --SNFGRLASTLVHLGEYQAAVDGARKAN-------STRTWKEVCFACVDGKEFRLAQMCGLHIV------VHADELEEL 1286 (1630)
T ss_pred --hHHHHHHHHHHHhCCHHHHHHHHHHhC-------CHHHHHHHHHHHhhhhHHHHHHHHHHhhh------cCHHHHHHH
Confidence 379999999999999999999998763 45889999999999999999988776542 255677899
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH----HHHHH--hcCChHHHHHHHHHhhhCCC-----CCHHHHHHHHHH
Q 042546 557 IKNLLVQRGFKDALSLLCLMKDHGFPPFVDPF----IKYVS--KSGTSDDAIAFLKGMTSKRF-----PSMSVVLCLFAA 625 (671)
Q Consensus 557 i~~~~~~g~~~~A~~l~~~m~~~~~~p~~~t~----~~~l~--~~g~~~~A~~~~~~m~~~~~-----p~~~~~~~l~~~ 625 (671)
+..|.+.|.+++|+.+++.... +.|....+ ..+++ +-+++.++.++|..-..-.+ -+...|.-++..
T Consensus 1287 i~yYe~~G~feEAI~LlE~aL~--LeraH~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~L 1364 (1630)
T 1xi4_A 1287 INYYQDRGYFEELITMLEAALG--LERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFL 1364 (1630)
T ss_pred HHHHHHcCCHHHHHHHHHHHhc--cChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHH
Confidence 9999999999999999987763 44444222 23343 55677777777764433111 356789999999
Q ss_pred HHHcCCHHHHHHHHH
Q 042546 626 FFQARRHSEAQDLLS 640 (671)
Q Consensus 626 ~~~~g~~~~A~~~~~ 640 (671)
|.+.|+++.|....-
T Consensus 1365 Y~~~~e~dnA~~tm~ 1379 (1630)
T 1xi4_A 1365 YDKYEEYDNAIITMM 1379 (1630)
T ss_pred HHhcccHHHHHHHHH
Confidence 999999999984443
No 36
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.52 E-value=2.7e-12 Score=123.22 Aligned_cols=233 Identities=13% Similarity=0.047 Sum_probs=191.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCC----HHHHH
Q 042546 409 AMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGS--DVG----DKMWV 482 (671)
Q Consensus 409 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~~~----~~~~~ 482 (671)
..+..+...+...|++++|...|++..+.. .+...|..+...|...|++++|.+.+++..+... .++ ..+|.
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 357788889999999999999999999877 7889999999999999999999999999876431 122 57899
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 042546 483 SLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLV 562 (671)
Q Consensus 483 ~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~ 562 (671)
.+...+...|++++|.+.|++..+ . .|+. ..+.+.|++++|...++..... .+.+...|..+...+..
T Consensus 84 ~l~~~~~~~~~~~~A~~~~~~a~~-~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 151 (258)
T 3uq3_A 84 RIGNAYHKLGDLKKTIEYYQKSLT-E--HRTA-------DILTKLRNAEKELKKAEAEAYV--NPEKAEEARLEGKEYFT 151 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH-H--CCCH-------HHHHHHHHHHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHh-c--Cchh-------HHHHHHhHHHHHHHHHHHHHHc--CcchHHHHHHHHHHHHH
Confidence 999999999999999999999987 3 3443 3466778999999999998763 22345678888889999
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCH-HHH---HHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 042546 563 QRGFKDALSLLCLMKDHGFPPFV-DPF---IKYVSKSGTSDDAIAFLKGMTSKRFPSMSVVLCLFAAFFQARRHSEAQDL 638 (671)
Q Consensus 563 ~g~~~~A~~l~~~m~~~~~~p~~-~t~---~~~l~~~g~~~~A~~~~~~m~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 638 (671)
.|++++|++.+++..+. .|+. ..+ ...+...|++++|...++...+..+.+...|..+..+|.+.|++++|.+.
T Consensus 152 ~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 229 (258)
T 3uq3_A 152 KSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALET 229 (258)
T ss_dssp TTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hcCHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 99999999999999874 3443 222 55667899999999999999987777899999999999999999999999
Q ss_pred HHhchHhh------hccHHHHHHHH
Q 042546 639 LSKCPRYV------RNHADVLNLLY 657 (671)
Q Consensus 639 ~~~m~~~~------~~~~~~~~l~~ 657 (671)
+++..+.. +...++...+.
T Consensus 230 ~~~a~~~~~~~~~~p~~~~~~~~l~ 254 (258)
T 3uq3_A 230 LDAARTKDAEVNNGSSAREIDQLYY 254 (258)
T ss_dssp HHHHHHHHHHHHTTTTHHHHHHHHH
T ss_pred HHHHHHhChhhcCCCchHHHHHHHH
Confidence 99977654 44455554443
No 37
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.46 E-value=1.9e-11 Score=117.21 Aligned_cols=227 Identities=7% Similarity=-0.013 Sum_probs=184.7
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 042546 301 ESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRK 380 (671)
Q Consensus 301 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~ 380 (671)
...|..+...+.+.|++++|...|++..+.. .+..+|..+...+...|++++|.+.+.+..+.. |
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--~----------- 69 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQG--R----------- 69 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--H-----------
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC--c-----------
Confidence 4678888899999999999999999999887 788999999999999999999999999877421 0
Q ss_pred HHhcCcccHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 042546 381 IVVSKQLDMRLFSKVVRVFRENGNVLT----DAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSA 456 (671)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 456 (671)
...++ ..++..+...|.+.|++++|...|++..+.. |+. ..+.+.
T Consensus 70 ----------------------~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~ 118 (258)
T 3uq3_A 70 ----------------------EMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKL 118 (258)
T ss_dssp ----------------------HTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHH
T ss_pred ----------------------ccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHH
Confidence 00011 2457888899999999999999999998753 443 346677
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 042546 457 GKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKF 536 (671)
Q Consensus 457 g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~ 536 (671)
|++++|...++++.... +.+...|..+...+...|++++|.+.+++..+ .. +.+..++..+...|.+.|++++|...
T Consensus 119 ~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~-~~-~~~~~~~~~l~~~~~~~~~~~~A~~~ 195 (258)
T 3uq3_A 119 RNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTKSDWPNAVKAYTEMIK-RA-PEDARGYSNRAAALAKLMSFPEAIAD 195 (258)
T ss_dssp HHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhcCHHHHHHHHHHHHh-cC-cccHHHHHHHHHHHHHhCCHHHHHHH
Confidence 88999999999988753 23456788888899999999999999999887 32 33577888899999999999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 042546 537 VHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKD 578 (671)
Q Consensus 537 ~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 578 (671)
|+...+. .+.+...|..+...|.+.|++++|.+.+++..+
T Consensus 196 ~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 235 (258)
T 3uq3_A 196 CNKAIEK--DPNFVRAYIRKATAQIAVKEYASALETLDAART 235 (258)
T ss_dssp HHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHh--CHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 9998864 234577888888899999999999999988765
No 38
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.43 E-value=3.5e-10 Score=109.61 Aligned_cols=238 Identities=11% Similarity=-0.023 Sum_probs=195.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 042546 407 TDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSS----AGKKDEANEFMDHMEASGSDVGDKMWV 482 (671)
Q Consensus 407 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~~~~~~~~ 482 (671)
+..++..+-..|...|++++|...|++..+ +.+...+..+...|.. .+++++|.+.|++..+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~---~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACD---LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHH---CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 345677788889999999999999999988 3456788889999999 999999999999998875 788888
Q ss_pred HHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHhCCCCCCHHHHH
Q 042546 483 SLIKGHCV----AGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCS----KNRAIDACKFVHNCVREYDLKPWHTTYE 554 (671)
Q Consensus 483 ~li~~~~~----~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~p~~~~~~ 554 (671)
.+...|.. .++.++|.+.|++..+ .+ +...+..+-..|.. .++.++|.+.|++..+. + +...+.
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~-~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~-~---~~~a~~ 150 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACD-LK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL-N---DGDGCT 150 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHH-TT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT-T---CHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHH-cC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhc-C---cHHHHH
Confidence 89999999 9999999999999998 55 67788889999999 99999999999999874 3 567777
Q ss_pred HHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHh----cCChHHHHHHHHHhhhCCCCCHHHHHHHHHHH
Q 042546 555 ELIKNLLV----QRGFKDALSLLCLMKDHGFPPFVDPFIKYVSK----SGTSDDAIAFLKGMTSKRFPSMSVVLCLFAAF 626 (671)
Q Consensus 555 ~li~~~~~----~g~~~~A~~l~~~m~~~~~~p~~~t~~~~l~~----~g~~~~A~~~~~~m~~~~~p~~~~~~~l~~~~ 626 (671)
.+-..|.. .+++++|++.+++..+.+.......+...|.. .+++++|...+++..+.++ ...+..+...|
T Consensus 151 ~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~ 228 (273)
T 1ouv_A 151 ILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQ 228 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHH
Confidence 88888888 89999999999999887532222233556667 8999999999999888653 67788899999
Q ss_pred HH----cCCHHHHHHHHHhchHhhhccHHHHHHHHhhhcC
Q 042546 627 FQ----ARRHSEAQDLLSKCPRYVRNHADVLNLLYSKKSG 662 (671)
Q Consensus 627 ~~----~g~~~~A~~~~~~m~~~~~~~~~~~~l~~~m~~~ 662 (671)
.+ .|++++|.+.+++..+. ..+.+...+..+...
T Consensus 229 ~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~l~~~~~~ 266 (273)
T 1ouv_A 229 YNGEGVTRNEKQAIENFKKGCKL--GAKGACDILKQLKIK 266 (273)
T ss_dssp HTTSSSSCCSTTHHHHHHHHHHH--TCHHHHHHHHTCCCC
T ss_pred HcCCCcccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHH
Confidence 99 99999999999987653 344555555555433
No 39
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.43 E-value=5.2e-11 Score=113.91 Aligned_cols=208 Identities=10% Similarity=-0.009 Sum_probs=117.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 042546 409 AMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGH 488 (671)
Q Consensus 409 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~ 488 (671)
..+..+...|...|++++|.+.|+++.+.. +.+...+..+...|.+.|++++|.+.++++.+.. +.+...+..+...|
T Consensus 38 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 38 DAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence 456666666666777777777776666543 3455566666666666666666666666665543 23455566666666
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 042546 489 CVAGDLDKAADCFQKMVEKEGTSH-AGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFK 567 (671)
Q Consensus 489 ~~~g~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~ 567 (671)
...|++++|.+.++++.+ .+..| +...+..+...|...|++++|...|++.... ...+...+..+...|...|+++
T Consensus 116 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~ 192 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQ-DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRL--NRNQPSVALEMADLLYKEREYV 192 (252)
T ss_dssp HHTTCHHHHHHHHHHHTT-CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHhHHHHHHHHHHHHHh-CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHcCCHH
Confidence 666666666666666654 33333 3444555555566666666666666655542 1223444455555555555555
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhchHhhh
Q 042546 568 DALSLLCLMKDHGFPPFVDPFIKYVSKSGTSDDAIAFLKGMTSKRFPSMSVVLCLFAAFFQARRHSEAQDLLSKCPRYVR 647 (671)
Q Consensus 568 ~A~~l~~~m~~~~~~p~~~t~~~~l~~~g~~~~A~~~~~~m~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 647 (671)
+|.+.++++ .+..+.+...+..+...+.+.|++++|.++++++.....
T Consensus 193 ~A~~~~~~~--------------------------------~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p 240 (252)
T 2ho1_A 193 PARQYYDLF--------------------------------AQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYP 240 (252)
T ss_dssp HHHHHHHHH--------------------------------HTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHH--------------------------------HHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCC
Confidence 555555554 443334445555555555566666666666655554444
Q ss_pred ccHHHH
Q 042546 648 NHADVL 653 (671)
Q Consensus 648 ~~~~~~ 653 (671)
..+.+.
T Consensus 241 ~~~~~~ 246 (252)
T 2ho1_A 241 GSLEYQ 246 (252)
T ss_dssp TSHHHH
T ss_pred CCHHHH
Confidence 444333
No 40
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.42 E-value=1.2e-10 Score=111.41 Aligned_cols=208 Identities=8% Similarity=-0.077 Sum_probs=168.4
Q ss_pred HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 042546 371 VNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIA 450 (671)
Q Consensus 371 ~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li 450 (671)
...+..+...+...|+.+ .+...++...+.. +.+...+..+...|...|++++|.+.|+++.+.. +.+...+..+.
T Consensus 37 ~~~~~~~a~~~~~~~~~~--~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la 112 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTE--QAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYG 112 (252)
T ss_dssp HHHHHHHHHHHHHTTCTG--GGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChH--HHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHH
Confidence 456677777788888655 3445555554432 4467789999999999999999999999998765 45788999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCC
Q 042546 451 FRLSSAGKKDEANEFMDHMEASGSDV-GDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNR 529 (671)
Q Consensus 451 ~~~~~~g~~~~A~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~ 529 (671)
..|...|++++|.+.++++.+.+..| +...+..+...+...|++++|.+.+++..+ .. +.+...+..+...|...|+
T Consensus 113 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~~~la~~~~~~g~ 190 (252)
T 2ho1_A 113 GFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLR-LN-RNQPSVALEMADLLYKERE 190 (252)
T ss_dssp HHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HC-SCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-cC-cccHHHHHHHHHHHHHcCC
Confidence 99999999999999999998733345 456788899999999999999999999987 33 3357788999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 042546 530 AIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPF 588 (671)
Q Consensus 530 ~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~t~ 588 (671)
+++|...|+..... ...+...+..+...+...|+.++|.+.++++.+. .|+...+
T Consensus 191 ~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~ 245 (252)
T 2ho1_A 191 YVPARQYYDLFAQG--GGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL--YPGSLEY 245 (252)
T ss_dssp HHHHHHHHHHHHTT--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTSHHH
T ss_pred HHHHHHHHHHHHHh--CcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH--CCCCHHH
Confidence 99999999999763 3456778888888999999999999999999864 4554433
No 41
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.41 E-value=2e-10 Score=107.37 Aligned_cols=198 Identities=9% Similarity=-0.022 Sum_probs=127.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 042546 409 AMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGH 488 (671)
Q Consensus 409 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~ 488 (671)
..+..+...+...|++++|.+.|++..+.. +.+...|..+...|...|++++|.+.++++.+.. +.+..++..+...+
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~ 86 (225)
T 2vq2_A 9 NIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWFL 86 (225)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHHH
Confidence 456677777788888888888888777654 3456677777777888888888888888776653 33566777777777
Q ss_pred Hhc-CCHHHHHHHHHHHHHcCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 042546 489 CVA-GDLDKAADCFQKMVEKEGTSHA-GYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGF 566 (671)
Q Consensus 489 ~~~-g~~~~a~~~~~~m~~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~ 566 (671)
... |++++|.+.++++.+ .+..|+ ...+..+..+|...|++++|...|+++.+. .+.+...+..+...+.+.|++
T Consensus 87 ~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~ 163 (225)
T 2vq2_A 87 CGRLNRPAESMAYFDKALA-DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAA--QPQFPPAFKELARTKMLAGQL 163 (225)
T ss_dssp HTTTCCHHHHHHHHHHHHT-STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHTCH
T ss_pred HHhcCcHHHHHHHHHHHHc-CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCchHHHHHHHHHHHcCCH
Confidence 777 788888887777766 444343 456666777777777777777777777653 222455666666667777777
Q ss_pred HHHHHHHHHHHhCCCCCCHHHH---HHHHHhcCChHHHHHHHHHhhhC
Q 042546 567 KDALSLLCLMKDHGFPPFVDPF---IKYVSKSGTSDDAIAFLKGMTSK 611 (671)
Q Consensus 567 ~~A~~l~~~m~~~~~~p~~~t~---~~~l~~~g~~~~A~~~~~~m~~~ 611 (671)
++|.+.+++..+.....+...+ ...+...|+.++|..+++.+...
T Consensus 164 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 164 GDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 7777776666543210111111 22223455555555555555443
No 42
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.41 E-value=4.5e-11 Score=111.45 Aligned_cols=198 Identities=12% Similarity=0.023 Sum_probs=104.0
Q ss_pred CCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCCCCHHHHHH
Q 042546 334 MEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNS 413 (671)
Q Consensus 334 p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (671)
++...+..+...+.+.|++++|...|++..+. . +.+...+..
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~------------------------------------p~~~~a~~~ 44 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKE--N------------------------------------PQDPEALYW 44 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--S------------------------------------SSCHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--C------------------------------------CCCHHHHHH
Confidence 34455556666666666666666666665532 1 122234555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-----------CCHHHHHHHHHHHHHCCCCCCHHHHH
Q 042546 414 VLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSA-----------GKKDEANEFMDHMEASGSDVGDKMWV 482 (671)
Q Consensus 414 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~-----------g~~~~A~~~~~~m~~~g~~~~~~~~~ 482 (671)
+...+.+.|++++|...|++..+.. +.+...|..+...|.+. |++++|...|++..+.. +-+...|.
T Consensus 45 lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~ 122 (217)
T 2pl2_A 45 LARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHL 122 (217)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHH
Confidence 5555666666666666666665543 33455566666666666 66666666666665542 12345555
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 042546 483 SLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLV 562 (671)
Q Consensus 483 ~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~ 562 (671)
.+-..+...|++++|.+.|++..+ .. .+...+..+..+|...|++++|...|++..+. -+.+...+..+...+.+
T Consensus 123 ~lg~~~~~~g~~~~A~~~~~~al~-~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~la~~~~~ 197 (217)
T 2pl2_A 123 QRGLVYALLGERDKAEASLKQALA-LE--DTPEIRSALAELYLSMGRLDEALAQYAKALEQ--APKDLDLRVRYASALLL 197 (217)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH-HC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHTC
T ss_pred HHHHHHHHcCChHHHHHHHHHHHh-cc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHH
Confidence 566666666666666666666655 33 45555566666666666666666666665542 12234455555555666
Q ss_pred cCCHHHHHHHHHHH
Q 042546 563 QRGFKDALSLLCLM 576 (671)
Q Consensus 563 ~g~~~~A~~l~~~m 576 (671)
.|++++|++.+++.
T Consensus 198 ~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 198 KGKAEEAARAAALE 211 (217)
T ss_dssp --------------
T ss_pred ccCHHHHHHHHHHH
Confidence 66666666655543
No 43
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.40 E-value=2.5e-11 Score=117.75 Aligned_cols=185 Identities=12% Similarity=0.015 Sum_probs=90.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 042546 410 MLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHC 489 (671)
Q Consensus 410 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~ 489 (671)
++..+...|...|++++|.+.|++..+.. +.+..+|..+...|.+.|++++|.+.|+++.+. .|+.......+..+.
T Consensus 79 ~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~ 155 (275)
T 1xnf_A 79 VFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAE 155 (275)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHH
Confidence 34455555555566666666665555443 234555555666666666666666666665543 233333333333444
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCC-----HHHHHHHHHHHHhcC
Q 042546 490 VAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPW-----HTTYEELIKNLLVQR 564 (671)
Q Consensus 490 ~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~-----~~~~~~li~~~~~~g 564 (671)
..|++++|...+++... . ..++...+ .++..+...++.++|...+...... .|+ ...|..+...|.+.|
T Consensus 156 ~~~~~~~A~~~~~~~~~-~-~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~~~~la~~~~~~g 229 (275)
T 1xnf_A 156 QKLDEKQAKEVLKQHFE-K-SDKEQWGW-NIVEFYLGNISEQTLMERLKADATD---NTSLAEHLSETNFYLGKYYLSLG 229 (275)
T ss_dssp HHHCHHHHHHHHHHHHH-H-SCCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCS---HHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HhcCHHHHHHHHHHHHh-c-CCcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcc---cccccccccHHHHHHHHHHHHcC
Confidence 45666666666655544 1 11222222 2444455555555666655554321 111 245555555566666
Q ss_pred CHHHHHHHHHHHHhCCCCC-CHHHHHHHHHhcCChHHHHHHH
Q 042546 565 GFKDALSLLCLMKDHGFPP-FVDPFIKYVSKSGTSDDAIAFL 605 (671)
Q Consensus 565 ~~~~A~~l~~~m~~~~~~p-~~~t~~~~l~~~g~~~~A~~~~ 605 (671)
++++|.+.+++..+. .| +...+...+...|++++|++.+
T Consensus 230 ~~~~A~~~~~~al~~--~p~~~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 230 DLDSATALFKLAVAN--NVHNFVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp CHHHHHHHHHHHHTT--CCTTCHHHHHHHHHHHHHHHC----
T ss_pred CHHHHHHHHHHHHhC--CchhHHHHHHHHHHHHHHHhhHHHH
Confidence 666666666665543 23 2333334444555555554443
No 44
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.40 E-value=9e-11 Score=109.80 Aligned_cols=210 Identities=13% Similarity=0.066 Sum_probs=175.5
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHH
Q 042546 441 ASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLL 520 (671)
Q Consensus 441 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~l 520 (671)
.+...|..+...+...|++++|.+.|+++.+.. +.+...|..+...|...|++++|.+.++++.+ .. +.+..++..+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~-~~~~~~~~~l 82 (225)
T 2vq2_A 6 QVSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALS-IK-PDSAEINNNY 82 (225)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HC-TTCHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHH-hC-CCChHHHHHH
Confidence 346678889999999999999999999998764 34678899999999999999999999999987 32 3467788999
Q ss_pred HHHHHhc-CCHHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HH---HHHHHHh
Q 042546 521 VNTYCSK-NRAIDACKFVHNCVREYDLKPW-HTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFV-DP---FIKYVSK 594 (671)
Q Consensus 521 i~~~~~~-g~~~~A~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~-~t---~~~~l~~ 594 (671)
...|... |++++|...|+.+.. .+..|+ ...|..+...+...|++++|++.++++.+. .|+. .. +...+.+
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~ 159 (225)
T 2vq2_A 83 GWFLCGRLNRPAESMAYFDKALA-DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAA--QPQFPPAFKELARTKML 159 (225)
T ss_dssp HHHHHTTTCCHHHHHHHHHHHHT-STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCcHHHHHHHHHHHHc-CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCchHHHHHHHHHHH
Confidence 9999999 999999999999986 333443 567888899999999999999999998874 3443 22 2556678
Q ss_pred cCChHHHHHHHHHhhhCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHhchHhhhccHHHHHHH
Q 042546 595 SGTSDDAIAFLKGMTSKRF-PSMSVVLCLFAAFFQARRHSEAQDLLSKCPRYVRNHADVLNLL 656 (671)
Q Consensus 595 ~g~~~~A~~~~~~m~~~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~l~ 656 (671)
.|++++|...++++....+ .+...+..+...+.+.|+.++|..+++.+....+..+.+..++
T Consensus 160 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 222 (225)
T 2vq2_A 160 AGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQTVL 222 (225)
T ss_dssp HTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHh
Confidence 9999999999999998777 7888898999999999999999999999876666666665544
No 45
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.40 E-value=3.6e-11 Score=112.07 Aligned_cols=195 Identities=11% Similarity=0.016 Sum_probs=96.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHH
Q 042546 442 SSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLV 521 (671)
Q Consensus 442 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li 521 (671)
+...+..+...+.+.|++++|...|++..+.. +.+...|..+...+.+.|++++|...+++..+ .. +.+...+..+.
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~-~~-P~~~~a~~~lg 80 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVA-RT-PRYLGGYMVLS 80 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HC-TTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hC-CCcHHHHHHHH
Confidence 33344444444444444444444444444332 12333444444444444444444444444443 11 11233344444
Q ss_pred HHHHhc-----------CCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH---
Q 042546 522 NTYCSK-----------NRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDP--- 587 (671)
Q Consensus 522 ~~~~~~-----------g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~t--- 587 (671)
..|... |++++|...|++..+. -+-+...|..+-..|...|++++|++.|++..+.. .+...
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~ 156 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERV--NPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSA 156 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHH
Confidence 444444 6666666666666542 11234556666666666777777777777666554 23222
Q ss_pred HHHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhch
Q 042546 588 FIKYVSKSGTSDDAIAFLKGMTSKRFPSMSVVLCLFAAFFQARRHSEAQDLLSKCP 643 (671)
Q Consensus 588 ~~~~l~~~g~~~~A~~~~~~m~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 643 (671)
+...+...|++++|+..+++..+..|.+...+..+..++.+.|++++|.+.+++..
T Consensus 157 la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 157 LAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 23445566777777777777776666677778888888888888888888777654
No 46
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.39 E-value=2.7e-11 Score=117.53 Aligned_cols=220 Identities=13% Similarity=0.010 Sum_probs=163.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 042546 409 AMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGH 488 (671)
Q Consensus 409 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~ 488 (671)
.++..+...|...|++++|...|++..+.. +.+..+|..+...|...|++++|.+.|++..+.. +.+..++..+...|
T Consensus 44 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~ 121 (275)
T 1xnf_A 44 QLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIAL 121 (275)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-ccccHHHHHHHHHH
Confidence 357778888999999999999999998765 4578899999999999999999999999998764 33578889999999
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 042546 489 CVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKD 568 (671)
Q Consensus 489 ~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~ 568 (671)
.+.|++++|.+.++++.+ . .|+.......+..+...|+.++|...+...... ..++...+. ++..+...++.++
T Consensus 122 ~~~g~~~~A~~~~~~a~~-~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~ 195 (275)
T 1xnf_A 122 YYGGRDKLAQDDLLAFYQ-D--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK--SDKEQWGWN-IVEFYLGNISEQT 195 (275)
T ss_dssp HHTTCHHHHHHHHHHHHH-H--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH--SCCCSTHHH-HHHHHTTSSCHHH
T ss_pred HHhccHHHHHHHHHHHHH-h--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCcchHHHH-HHHHHHHhcCHHH
Confidence 999999999999999987 2 344444445555566779999999999887764 334444444 6666777888899
Q ss_pred HHHHHHHHHhCCCCC--C-HH---HHHHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 042546 569 ALSLLCLMKDHGFPP--F-VD---PFIKYVSKSGTSDDAIAFLKGMTSKRFPSMSVVLCLFAAFFQARRHSEAQDLL 639 (671)
Q Consensus 569 A~~l~~~m~~~~~~p--~-~~---t~~~~l~~~g~~~~A~~~~~~m~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 639 (671)
|++.+++..+..... + .. .+...+.+.|++++|...|++.....+.+...+ ..++...|++++|.+-+
T Consensus 196 a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~---~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 196 LMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEH---RYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHHH---HHHHHHHHHHHHC----
T ss_pred HHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHHHH---HHHHHHHHHHHhhHHHH
Confidence 999998876432110 1 11 124556788999999999999988765453333 55677788888887765
No 47
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.39 E-value=2.9e-09 Score=112.15 Aligned_cols=364 Identities=10% Similarity=-0.027 Sum_probs=214.9
Q ss_pred CCHHHHHHHHHHHHccCChHHHHHHHHHHHHc-----C--CCC-CHHHHHHHHHHHHhCCChHHHHHHHHHHHhC-----
Q 042546 299 HDESSYNAMASVLGREDCIDRFWKVLDEMRSK-----G--YEM-EMETCVKVLGRFSERNMVKEAVDLYEFAMAC----- 365 (671)
Q Consensus 299 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g--~~p-~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~----- 365 (671)
.....||.|-..+...|++++|++.|++..+. + ..| ...+|+.+...|...|++++|...+++..+.
T Consensus 49 ~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~ 128 (472)
T 4g1t_A 49 FKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFS 128 (472)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcc
Confidence 34567888888888899999998888776431 1 123 4678888888899999999998888876531
Q ss_pred -CCCC-CHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCCCCHHHHHHHHHH---HHhcCCHHHHHHHHHHHHHCCCC
Q 042546 366 -KNKP-SVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKA---LISVGRMGECNKILKAMEEGGFI 440 (671)
Q Consensus 366 -g~~p-~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~---~~~~g~~~~A~~~~~~m~~~g~~ 440 (671)
...+ ...++..+-.++.+.+..+.+.+...++...+.. +-+...+..+..+ +...++.++|.+.+++..+.. +
T Consensus 129 ~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p 206 (472)
T 4g1t_A 129 SPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-P 206 (472)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-S
T ss_pred cccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-C
Confidence 1112 2344544444555555545555666666555432 2233344444433 445677888998888877654 4
Q ss_pred CCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHH
Q 042546 441 ASSNMKSKIAFRLSS----AGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYA 516 (671)
Q Consensus 441 ~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~ 516 (671)
.+..++..+...+.. .|+.++|.+.+++..... +.+..++..+...|...|++++|.+.+++..+ .. +-+..+
T Consensus 207 ~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~-~~-p~~~~~ 283 (472)
T 4g1t_A 207 DNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALE-YI-PNNAYL 283 (472)
T ss_dssp SCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HS-TTCHHH
T ss_pred cchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHH-hC-CChHHH
Confidence 556666666655554 467889999999887764 45677888899999999999999999999887 22 224455
Q ss_pred HHHHHHHHHhc-------------------CCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 042546 517 IDLLVNTYCSK-------------------NRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMK 577 (671)
Q Consensus 517 ~~~li~~~~~~-------------------g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 577 (671)
+..+..+|... +..++|...|....... +.+...+..+...|...|++++|++.|++..
T Consensus 284 ~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL 361 (472)
T 4g1t_A 284 HCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN--DNLFRVCSILASLHALADQYEEAEYYFQKEF 361 (472)
T ss_dssp HHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC--TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC--CchhhhhhhHHHHHHHhccHHHHHHHHHHHH
Confidence 55555554321 23567777787776542 2334567778888999999999999999988
Q ss_pred hCCCCCCHHH-----HHH-HHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHHH--------HcCCHHHHHHHHHhch
Q 042546 578 DHGFPPFVDP-----FIK-YVSKSGTSDDAIAFLKGMTSKRFPSMSVVLCLFAAFF--------QARRHSEAQDLLSKCP 643 (671)
Q Consensus 578 ~~~~~p~~~t-----~~~-~l~~~g~~~~A~~~~~~m~~~~~p~~~~~~~l~~~~~--------~~g~~~~A~~~~~~m~ 643 (671)
+....|.... +.. .+.+.|+.++|+..+++..+..+.+.... ..+..+. ...+..++...+-.+-
T Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~-~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~ 440 (472)
T 4g1t_A 362 SKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKE-KMKDKLQKIAKMRLSKNGADSEALHVLAFLQ 440 (472)
T ss_dssp HSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHH-HHHHHHHHHHHHHHHHCC-CTTHHHHHHHHH
T ss_pred hcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHH-HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 7544333221 111 22467899999999998887554333221 1111111 1111122222222233
Q ss_pred HhhhccHHHHHHHHhhhcCC-CCCCCcC
Q 042546 644 RYVRNHADVLNLLYSKKSGG-DSAPAVT 670 (671)
Q Consensus 644 ~~~~~~~~~~~l~~~m~~~g-~~p~~~t 670 (671)
...+...++++.|++..+.| .-|++.+
T Consensus 441 ~~~g~~~~A~~~y~kALe~~~~~p~a~~ 468 (472)
T 4g1t_A 441 ELNEKMQQADEDSERGLESGSLIPSASS 468 (472)
T ss_dssp HHHHHCC---------------------
T ss_pred HHcCCHHHHHHHHHHHHhcCCCCCcHhh
Confidence 34467888999999988876 5666554
No 48
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.39 E-value=7.6e-11 Score=114.16 Aligned_cols=246 Identities=11% Similarity=0.020 Sum_probs=189.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHH
Q 042546 411 LNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVG--DKMWVSLIKGH 488 (671)
Q Consensus 411 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~--~~~~~~li~~~ 488 (671)
+......+...|++++|...|++..+.. +.+...+..+...|...|++++|.+.+++..+....++ ..+|..+...+
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~ 84 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKIL 84 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHH
Confidence 4556677889999999999999998765 34555888899999999999999999999988432222 34588999999
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 042546 489 CVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKD 568 (671)
Q Consensus 489 ~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~ 568 (671)
...|++++|.+.|++..+ .. +.+..++..+...|...|++++|...|++.... .+.+...|..+...+...+++++
T Consensus 85 ~~~~~~~~A~~~~~~a~~-~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~ 160 (272)
T 3u4t_A 85 MKKGQDSLAIQQYQAAVD-RD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP--TTTDPKVFYELGQAYYYNKEYVK 160 (272)
T ss_dssp HHTTCHHHHHHHHHHHHH-HS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS--SCCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHcccHHHHHHHHHHHHh-cC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc--CCCcHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999987 32 224568899999999999999999999998753 23355666666624445569999
Q ss_pred HHHHHHHHHhCCCCCCHH-HH---HHHHHhcCC---hHHHHHHHHHhhhCC--CCC------HHHHHHHHHHHHHcCCHH
Q 042546 569 ALSLLCLMKDHGFPPFVD-PF---IKYVSKSGT---SDDAIAFLKGMTSKR--FPS------MSVVLCLFAAFFQARRHS 633 (671)
Q Consensus 569 A~~l~~~m~~~~~~p~~~-t~---~~~l~~~g~---~~~A~~~~~~m~~~~--~p~------~~~~~~l~~~~~~~g~~~ 633 (671)
|++.+++..+. .|+.. .+ ...+...|+ .++|...+++..+.. .|+ ...|..+...|.+.|+++
T Consensus 161 A~~~~~~a~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 238 (272)
T 3u4t_A 161 ADSSFVKVLEL--KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKV 238 (272)
T ss_dssp HHHHHHHHHHH--STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHh--CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHH
Confidence 99999999874 45532 22 344455666 888988888877631 233 367888999999999999
Q ss_pred HHHHHHHhchHhhhccHHHHHHHHhhhcCC
Q 042546 634 EAQDLLSKCPRYVRNHADVLNLLYSKKSGG 663 (671)
Q Consensus 634 ~A~~~~~~m~~~~~~~~~~~~l~~~m~~~g 663 (671)
+|.+.+++.....+..+.+.+....+...+
T Consensus 239 ~A~~~~~~al~~~p~~~~a~~~l~~~~~~~ 268 (272)
T 3u4t_A 239 KADAAWKNILALDPTNKKAIDGLKMKLEHH 268 (272)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHC------
T ss_pred HHHHHHHHHHhcCccHHHHHHHhhhhhccc
Confidence 999999999888888888888887776554
No 49
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.37 E-value=4e-11 Score=113.86 Aligned_cols=215 Identities=13% Similarity=0.060 Sum_probs=109.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 042546 407 TDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIK 486 (671)
Q Consensus 407 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~ 486 (671)
....|..+...+...|++++|...|++..+.. +.+...+..+...|.+.|++++|.+.++++.+.. +.+...+..+..
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 99 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGN 99 (243)
T ss_dssp --------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHH
Confidence 33456666666666777777777777666543 3455666666666666666666666666665543 234555666666
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 042546 487 GHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGF 566 (671)
Q Consensus 487 ~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~ 566 (671)
.+...|++++|.+.++++.+ .. +.+...+..+...|.+.|++++|...+++.... ...+...+..+...+.+.
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~-~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~--- 172 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALR-AG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVEL--NENDTEARFQFGMCLANE--- 172 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHH-HT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHH---
T ss_pred HHHHhccHHHHHHHHHHHHH-hC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHc---
Confidence 66666666666666666655 21 223445555555566666666666666655542 122334444444444444
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhchHhh
Q 042546 567 KDALSLLCLMKDHGFPPFVDPFIKYVSKSGTSDDAIAFLKGMTSKRFPSMSVVLCLFAAFFQARRHSEAQDLLSKCPRYV 646 (671)
Q Consensus 567 ~~A~~l~~~m~~~~~~p~~~t~~~~l~~~g~~~~A~~~~~~m~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 646 (671)
|++++|...++++....+.+...|..+..+|.+.|++++|.+.+++..+..
T Consensus 173 -----------------------------~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 173 -----------------------------GMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp -----------------------------TCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred -----------------------------CCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 455555555554444444455566666666666677777776666665555
Q ss_pred hccHHHHHHHHhh
Q 042546 647 RNHADVLNLLYSK 659 (671)
Q Consensus 647 ~~~~~~~~l~~~m 659 (671)
+..+.+...+..+
T Consensus 224 p~~~~~~~~~~~l 236 (243)
T 2q7f_A 224 PDHMLALHAKKLL 236 (243)
T ss_dssp TTCHHHHHHHTC-
T ss_pred cchHHHHHHHHHH
Confidence 5555554444433
No 50
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.36 E-value=2e-10 Score=111.21 Aligned_cols=244 Identities=12% Similarity=-0.001 Sum_probs=159.5
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 042546 303 SYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIV 382 (671)
Q Consensus 303 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~ 382 (671)
.+......+.+.|++++|...|++..+.. +.+...+..+...+...|++++|++.+++..+.+..|+.
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~----------- 72 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKA----------- 72 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTC-----------
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhH-----------
Confidence 34455666777888888888888877653 123446777777888888888888888877753211111
Q ss_pred hcCcccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 042546 383 VSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEA 462 (671)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A 462 (671)
....|..+...|...|++++|.+.|++..+.. +.+..+|..+...|...|++++|
T Consensus 73 ------------------------~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A 127 (272)
T 3u4t_A 73 ------------------------KSADFEYYGKILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLA 127 (272)
T ss_dssp ------------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHH
T ss_pred ------------------------HHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHH
Confidence 12235666777778888888888888877654 34557778888888888888888
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHH
Q 042546 463 NEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNR---AIDACKFVHN 539 (671)
Q Consensus 463 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~---~~~A~~~~~~ 539 (671)
.+.|++..+.. +.+...|..+...+...+++++|.+.|++..+ .. +.+...+..+..++...|+ .++|...|++
T Consensus 128 ~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 204 (272)
T 3u4t_A 128 IQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKADSSFVKVLE-LK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEK 204 (272)
T ss_dssp HHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHH
T ss_pred HHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHH
Confidence 88888776652 33455566665234444588888888888776 21 2235566666666766676 6777777777
Q ss_pred HHHhCCCCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 042546 540 CVREYDLKPW------HTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPF 588 (671)
Q Consensus 540 m~~~~~~~p~------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~t~ 588 (671)
..+...-.|+ ...|..+...|.+.|++++|.+.+++..+. .|+....
T Consensus 205 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~a 257 (272)
T 3u4t_A 205 LIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILAL--DPTNKKA 257 (272)
T ss_dssp HHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHH
T ss_pred HHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CccHHHH
Confidence 6653222233 145666777777777777777777777653 4554433
No 51
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.35 E-value=6e-11 Score=123.94 Aligned_cols=219 Identities=16% Similarity=0.084 Sum_probs=160.9
Q ss_pred HHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHCCCCCCHHHHH
Q 042546 410 MLNSVLKALISVG---RMGECNKILKAMEEGGFIASSNMKSKIAFRLSSA----GKKDEANEFMDHMEASGSDVGDKMWV 482 (671)
Q Consensus 410 ~~~~li~~~~~~g---~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~----g~~~~A~~~~~~m~~~g~~~~~~~~~ 482 (671)
.+..|-..|.+.| +.++|.+.|++..+.| .++...+..|...|... +++++|.+.|++.. .| +...+.
T Consensus 178 a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g---~~~a~~ 252 (452)
T 3e4b_A 178 CYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-PG---YPASWV 252 (452)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-GG---STHHHH
T ss_pred HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-CC---CHHHHH
Confidence 6778888888899 8999999999999888 56777667777777654 79999999999987 43 445555
Q ss_pred HHHHH-H--HhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcC-----CHHHHHHHHHHHHHhCCCCCCHHHHH
Q 042546 483 SLIKG-H--CVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKN-----RAIDACKFVHNCVREYDLKPWHTTYE 554 (671)
Q Consensus 483 ~li~~-~--~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g-----~~~~A~~~~~~m~~~~~~~p~~~~~~ 554 (671)
.+-.. + ...++.++|.+.|++..+ .| +...+..|-..|. .| +.++|.+.|.... .-+...+.
T Consensus 253 ~Lg~~~~~~~~~~d~~~A~~~~~~Aa~-~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-----~g~~~A~~ 322 (452)
T 3e4b_A 253 SLAQLLYDFPELGDVEQMMKYLDNGRA-AD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-----GREVAADY 322 (452)
T ss_dssp HHHHHHHHSGGGCCHHHHHHHHHHHHH-TT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-----TTCHHHHH
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHH-CC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-----CCCHHHHH
Confidence 55555 3 568999999999999988 66 5667777777776 45 9999999998775 22566677
Q ss_pred HHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH----hcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHH
Q 042546 555 ELIKNLLV----QRGFKDALSLLCLMKDHGFPPFVDPFIKYVS----KSGTSDDAIAFLKGMTSKRFPSMSVVLCLFAAF 626 (671)
Q Consensus 555 ~li~~~~~----~g~~~~A~~l~~~m~~~~~~p~~~t~~~~l~----~~g~~~~A~~~~~~m~~~~~p~~~~~~~l~~~~ 626 (671)
.|-..|.. ..+.++|.++|++..+.|...-...+..+|. ...+.++|..+|+...+.+.++.......+...
T Consensus 323 ~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~~a~~~l~~l~~~ 402 (452)
T 3e4b_A 323 YLGQIYRRGYLGKVYPQKALDHLLTAARNGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTPEANDLATQLEAP 402 (452)
T ss_dssp HHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCHHHHHHHHHHHTT
T ss_pred HHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 77766666 4499999999999998876443344444443 346899999999999887765544443334333
Q ss_pred HHcCCHHHHHHHHHhch
Q 042546 627 FQARRHSEAQDLLSKCP 643 (671)
Q Consensus 627 ~~~g~~~~A~~~~~~m~ 643 (671)
...++.++|.++.++-.
T Consensus 403 ~~~~~~~~a~~~~~~~~ 419 (452)
T 3e4b_A 403 LTPAQRAEGQRLVQQEL 419 (452)
T ss_dssp CCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 33456667777777644
No 52
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.34 E-value=1.8e-08 Score=108.87 Aligned_cols=219 Identities=8% Similarity=-0.004 Sum_probs=157.4
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH-HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 042546 426 ECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEAN-EFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKM 504 (671)
Q Consensus 426 ~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~-~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 504 (671)
.+..+|++....- +-+...|-..+.-+.+.|+.++|. ++|++.... ++.+...|-..+...-+.|++++|.++|+.+
T Consensus 327 Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~ 404 (679)
T 4e6h_A 327 RMTYVYMQAAQHV-CFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSC 404 (679)
T ss_dssp HHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 4556787777543 457788888888888889988896 999988764 3446666777888888899999999999988
Q ss_pred HHcCC---------CCCC------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHh
Q 042546 505 VEKEG---------TSHA------------GYAIDLLVNTYCSKNRAIDACKFVHNCVRE-YDLKPWHTTYEELIKNLLV 562 (671)
Q Consensus 505 ~~~~g---------~~p~------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~p~~~~~~~li~~~~~ 562 (671)
.+ .. -.|+ ..+|...+....+.|.++.|..+|....+. ....+ ..|...+..-.+
T Consensus 405 l~-~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~--~lyi~~A~lE~~ 481 (679)
T 4e6h_A 405 ID-RIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTP--DIYLENAYIEYH 481 (679)
T ss_dssp HH-HHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCT--HHHHHHHHHHHT
T ss_pred HH-HHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCh--HHHHHHHHHHHH
Confidence 76 21 0132 336777777777889999999999998763 12223 333332222233
Q ss_pred c-CCHHHHHHHHHHHHhCCCCCCHHHH----HHHHHhcCChHHHHHHHHHhhhCCCC---CHHHHHHHHHHHHHcCCHHH
Q 042546 563 Q-RGFKDALSLLCLMKDHGFPPFVDPF----IKYVSKSGTSDDAIAFLKGMTSKRFP---SMSVVLCLFAAFFQARRHSE 634 (671)
Q Consensus 563 ~-g~~~~A~~l~~~m~~~~~~p~~~t~----~~~l~~~g~~~~A~~~~~~m~~~~~p---~~~~~~~l~~~~~~~g~~~~ 634 (671)
. ++.+.|.++|+...+. .|+...+ +..+...|+.+.|..+|+......++ ....|...++.-.+.|+.+.
T Consensus 482 ~~~d~e~Ar~ife~~Lk~--~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~ 559 (679)
T 4e6h_A 482 ISKDTKTACKVLELGLKY--FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNS 559 (679)
T ss_dssp TTSCCHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHH
T ss_pred hCCCHHHHHHHHHHHHHH--CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 3 4589999999988765 4544433 44445789999999999998886652 44678888888888999999
Q ss_pred HHHHHHhchHhhhccHH
Q 042546 635 AQDLLSKCPRYVRNHAD 651 (671)
Q Consensus 635 A~~~~~~m~~~~~~~~~ 651 (671)
+.++.+++.+..+..+.
T Consensus 560 ~~~v~~R~~~~~P~~~~ 576 (679)
T 4e6h_A 560 VRTLEKRFFEKFPEVNK 576 (679)
T ss_dssp HHHHHHHHHHHSTTCCH
T ss_pred HHHHHHHHHHhCCCCcH
Confidence 99999998876655443
No 53
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.34 E-value=7.1e-11 Score=112.10 Aligned_cols=208 Identities=10% Similarity=-0.064 Sum_probs=156.6
Q ss_pred HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 042546 371 VNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIA 450 (671)
Q Consensus 371 ~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li 450 (671)
...+..+-..+...|+.+ .+...++...+ ..+.+...+..+...|.+.|++++|.+.|++..+.. +.+..++..+.
T Consensus 23 ~~~~~~~a~~~~~~~~~~--~A~~~~~~~l~-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la 98 (243)
T 2q7f_A 23 SMTGGQQMGRGSEFGDYE--KAAEAFTKAIE-ENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAG 98 (243)
T ss_dssp ---------------------CCTTHHHHHT-TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCHH--HHHHHHHHHHH-hCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHH
Confidence 344555555555555443 34445555544 234467788999999999999999999999998765 45788999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCH
Q 042546 451 FRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRA 530 (671)
Q Consensus 451 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~ 530 (671)
..|...|++++|.+.++++.+.. +.+...+..+...+...|++++|.+.++++.+ . .+.+...+..+...|.+.|++
T Consensus 99 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~-~-~~~~~~~~~~l~~~~~~~~~~ 175 (243)
T 2q7f_A 99 NVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVE-L-NENDTEARFQFGMCLANEGML 175 (243)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHH-H-CTTCHHHHHHHHHHHHHHTCC
T ss_pred HHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH-h-CCccHHHHHHHHHHHHHcCCH
Confidence 99999999999999999998765 45778899999999999999999999999987 3 234677888999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 042546 531 IDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPFI 589 (671)
Q Consensus 531 ~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~t~~ 589 (671)
++|.+.|++.... ...+..+|..+...|.+.|++++|.+.++++.+. .|+.....
T Consensus 176 ~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~ 230 (243)
T 2q7f_A 176 DEALSQFAAVTEQ--DPGHADAFYNAGVTYAYKENREKALEMLDKAIDI--QPDHMLAL 230 (243)
T ss_dssp HHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH--CTTCHHHH
T ss_pred HHHHHHHHHHHHh--CcccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc--CcchHHHH
Confidence 9999999999874 3345778889999999999999999999998863 55544433
No 54
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.33 E-value=1.6e-09 Score=104.88 Aligned_cols=226 Identities=12% Similarity=-0.037 Sum_probs=177.9
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 042546 335 EMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSV 414 (671)
Q Consensus 335 ~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 414 (671)
+..++..+-..+...|++++|.+.|++..+. + +...+..+
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~----~------------------------------------~~~a~~~l 44 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL----K------------------------------------ENSGCFNL 44 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT----T------------------------------------CHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC----C------------------------------------CHHHHHHH
Confidence 5677888888889999999999999988752 1 11235556
Q ss_pred HHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 042546 415 LKALIS----VGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSS----AGKKDEANEFMDHMEASGSDVGDKMWVSLIK 486 (671)
Q Consensus 415 i~~~~~----~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~ 486 (671)
...|.. .+++++|...|++..+.+ +...+..+...|.. .+++++|.+.|++..+.+ +...+..+-.
T Consensus 45 g~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~ 118 (273)
T 1ouv_A 45 GVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGG 118 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHH
Confidence 666777 899999999999988865 67888888888988 999999999999988764 6788888888
Q ss_pred HHHh----cCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 042546 487 GHCV----AGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCS----KNRAIDACKFVHNCVREYDLKPWHTTYEELIK 558 (671)
Q Consensus 487 ~~~~----~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~ 558 (671)
.|.. .++.++|.+.|++..+ .+ +...+..+-..|.. .++.++|...|++..+. + +...+..+-.
T Consensus 119 ~~~~~~~~~~~~~~A~~~~~~a~~-~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~ 190 (273)
T 1ouv_A 119 IYHDGKVVTRDFKKAVEYFTKACD-LN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL-K---DSPGCFNAGN 190 (273)
T ss_dssp HHHHCSSSCCCHHHHHHHHHHHHH-TT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHH
T ss_pred HHHcCCCcccCHHHHHHHHHHHHh-cC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-C---CHHHHHHHHH
Confidence 8888 8999999999999888 55 55667777788887 89999999999988764 2 4577777888
Q ss_pred HHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHh----cCChHHHHHHHHHhhhCCCC
Q 042546 559 NLLV----QRGFKDALSLLCLMKDHGFPPFVDPFIKYVSK----SGTSDDAIAFLKGMTSKRFP 614 (671)
Q Consensus 559 ~~~~----~g~~~~A~~l~~~m~~~~~~p~~~t~~~~l~~----~g~~~~A~~~~~~m~~~~~p 614 (671)
.|.. .+++++|++.+++..+.+..+....+...|.+ .++.++|.+.+++..+.+++
T Consensus 191 ~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~ 254 (273)
T 1ouv_A 191 MYHHGEGATKNFKEALARYSKACELENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAK 254 (273)
T ss_dssp HHHHTCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCH
T ss_pred HHHcCCCCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCH
Confidence 8888 89999999999998876532111223455566 88999999999888776543
No 55
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.28 E-value=4.6e-11 Score=118.08 Aligned_cols=237 Identities=14% Similarity=0.057 Sum_probs=170.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC------CC
Q 042546 408 DAMLNSVLKALISVGRMGECNKILKAMEEG-------GFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEAS------GS 474 (671)
Q Consensus 408 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~ 474 (671)
..++..+...|...|++++|..+|+++.+. ..+....++..+...|...|++++|...+++..+. +-
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 456888899999999999999999998863 22344567888999999999999999999988753 21
Q ss_pred CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC---
Q 042546 475 DV-GDKMWVSLIKGHCVAGDLDKAADCFQKMVEKE-----GTSH-AGYAIDLLVNTYCSKNRAIDACKFVHNCVREY--- 544 (671)
Q Consensus 475 ~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-----g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--- 544 (671)
.| ...++..+...|...|++++|.+.+++..+.. +-.| ....+..+...|...|++++|.+.|++.....
T Consensus 107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~ 186 (311)
T 3nf1_A 107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTK 186 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 22 35678889999999999999999999988621 2223 34567888889999999999999999887531
Q ss_pred --CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-------CCCCCH---HHHH-------HHHHhcCChHHHHHH
Q 042546 545 --DLKP-WHTTYEELIKNLLVQRGFKDALSLLCLMKDH-------GFPPFV---DPFI-------KYVSKSGTSDDAIAF 604 (671)
Q Consensus 545 --~~~p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-------~~~p~~---~t~~-------~~l~~~g~~~~A~~~ 604 (671)
+..| ...++..+...|...|++++|.+.++++.+. ...+.. .... ..+...+.+.+|...
T Consensus 187 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 266 (311)
T 3nf1_A 187 LGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGW 266 (311)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC--
T ss_pred hCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHH
Confidence 1122 2347788889999999999999999988752 111111 1111 222345666677777
Q ss_pred HHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhchH
Q 042546 605 LKGMTSKRFPSMSVVLCLFAAFFQARRHSEAQDLLSKCPR 644 (671)
Q Consensus 605 ~~~m~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 644 (671)
++......+.+...|..+..+|.+.|++++|.+++++..+
T Consensus 267 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 267 YKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp -------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 7776665555678899999999999999999999988653
No 56
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.27 E-value=1.2e-09 Score=110.51 Aligned_cols=225 Identities=10% Similarity=0.002 Sum_probs=186.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 042546 409 AMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGK-KDEANEFMDHMEASGSDVGDKMWVSLIKG 487 (671)
Q Consensus 409 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~~~~~~~~~li~~ 487 (671)
..|+.+...+.+.|++++|+..|++..+.. +-+...|+.+...+.+.|+ +++|+..|++..+.. .-+...|..+...
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~~ 175 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVL 175 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
Confidence 357778888999999999999999999865 5568899999999999997 999999999998875 3467889999999
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-cCCH
Q 042546 488 HCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLV-QRGF 566 (671)
Q Consensus 488 ~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~-~g~~ 566 (671)
+...|++++|+..|+++.+ .. .-+...|..+-.++.+.|++++|...|+++.+. -.-+...|+.+...+.+ .|..
T Consensus 176 ~~~~g~~~eAl~~~~kal~-ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l--~P~~~~a~~~lg~~l~~l~~~~ 251 (382)
T 2h6f_A 176 VEWLRDPSQELEFIADILN-QD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE--DVRNNSVWNQRYFVISNTTGYN 251 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHH-HC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCSC
T ss_pred HHHccCHHHHHHHHHHHHH-hC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCcc
Confidence 9999999999999999987 22 236778888999999999999999999999874 23367789999988988 6665
Q ss_pred HHH-----HHHHHHHHhCCCCCCHHHH----HHHHHhcC--ChHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcC-----
Q 042546 567 KDA-----LSLLCLMKDHGFPPFVDPF----IKYVSKSG--TSDDAIAFLKGMTSKRFPSMSVVLCLFAAFFQAR----- 630 (671)
Q Consensus 567 ~~A-----~~l~~~m~~~~~~p~~~t~----~~~l~~~g--~~~~A~~~~~~m~~~~~p~~~~~~~l~~~~~~~g----- 630 (671)
++| ++.+++..+ +.|+.... ..+|.+.| ++++|...++++ +..+.+...+..+.++|.+.|
T Consensus 252 ~eA~~~~el~~~~~Al~--l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~ 328 (382)
T 2h6f_A 252 DRAVLEREVQYTLEMIK--LVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCD 328 (382)
T ss_dssp SHHHHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCS
T ss_pred hHHHHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhccccc
Confidence 777 588888876 45665332 34456667 689999999988 666678899999999999975
Q ss_pred ----CHHHHHHHHHhc
Q 042546 631 ----RHSEAQDLLSKC 642 (671)
Q Consensus 631 ----~~~~A~~~~~~m 642 (671)
..++|.+++++.
T Consensus 329 ~~~~~~~~A~~~~~~l 344 (382)
T 2h6f_A 329 NKEDILNKALELCEIL 344 (382)
T ss_dssp SHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHH
Confidence 358999999998
No 57
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.26 E-value=4.1e-10 Score=115.91 Aligned_cols=302 Identities=10% Similarity=-0.000 Sum_probs=215.6
Q ss_pred CCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHH
Q 042546 298 KHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEME----METCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNC 373 (671)
Q Consensus 298 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~t~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~ 373 (671)
.+....+......+.+.|++++|...|++..+.+. .+ ..+|..+...+...|++++|...+++....
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-------- 76 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVGT-EDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTL-------- 76 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH--------
Confidence 56677788888899999999999999999988732 23 357888889999999999999999987631
Q ss_pred HHHHHHHHHhcCcccHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HHHHH
Q 042546 374 CTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVL-TDAMLNSVLKALISVGRMGECNKILKAMEEGGF-IAS----SNMKS 447 (671)
Q Consensus 374 ~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~~~----~~~~~ 447 (671)
... .+..+ ...++..+...|...|++++|...+++..+..- .++ ..++.
T Consensus 77 -------~~~------------------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 131 (406)
T 3sf4_A 77 -------ART------------------IGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALY 131 (406)
T ss_dssp -------HHH------------------TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred -------HHh------------------ccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHH
Confidence 000 01111 123577788889999999999999988764210 112 44788
Q ss_pred HHHHHHHhcCC--------------------HHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 042546 448 KIAFRLSSAGK--------------------KDEANEFMDHMEAS----GSDV-GDKMWVSLIKGHCVAGDLDKAADCFQ 502 (671)
Q Consensus 448 ~li~~~~~~g~--------------------~~~A~~~~~~m~~~----g~~~-~~~~~~~li~~~~~~g~~~~a~~~~~ 502 (671)
.+...|...|+ +++|.+.+++..+. +..| ...++..+...|...|++++|.+.++
T Consensus 132 ~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 211 (406)
T 3sf4_A 132 NLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHE 211 (406)
T ss_dssp HHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHH
T ss_pred HHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 88889999999 99999998876432 1111 13467888889999999999999999
Q ss_pred HHHHcCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHH
Q 042546 503 KMVEKEGTSHA----GYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPW----HTTYEELIKNLLVQRGFKDALSLLC 574 (671)
Q Consensus 503 ~m~~~~g~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~l~~ 574 (671)
+..+...-.++ ..++..+...|...|++++|...+++......-.++ ..++..+...|...|++++|.+.++
T Consensus 212 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 291 (406)
T 3sf4_A 212 QRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHL 291 (406)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHH
Confidence 88751111122 336788888999999999999999887643111112 4577788888999999999999998
Q ss_pred HHHhCCC-CCCH-------HHHHHHHHhcCChHHHHHHHHHhhhC----CC--CCHHHHHHHHHHHHHcCCHH
Q 042546 575 LMKDHGF-PPFV-------DPFIKYVSKSGTSDDAIAFLKGMTSK----RF--PSMSVVLCLFAAFFQARRHS 633 (671)
Q Consensus 575 ~m~~~~~-~p~~-------~t~~~~l~~~g~~~~A~~~~~~m~~~----~~--p~~~~~~~l~~~~~~~g~~~ 633 (671)
+..+... .++. ..+...+...|++++|...+++..+. +. ....++..+...+...|+..
T Consensus 292 ~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 364 (406)
T 3sf4_A 292 KHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSY 364 (406)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhH
Confidence 8764211 1111 12245557889999999999887652 11 23556778888888888764
No 58
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.23 E-value=2.4e-09 Score=108.30 Aligned_cols=247 Identities=8% Similarity=-0.020 Sum_probs=194.7
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 042546 336 METCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVL 415 (671)
Q Consensus 336 ~~t~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li 415 (671)
...|..+...+.+.|++++|++.|++..+. .| -+..+|+.+.
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l--~P------------------------------------~~~~a~~~~g 138 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIEL--NA------------------------------------ANYTVWHFRR 138 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHH--CT------------------------------------TCHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHh--Cc------------------------------------cCHHHHHHHH
Confidence 567778888889999999999999998752 22 2334577888
Q ss_pred HHHHhcCC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 042546 416 KALISVGR-MGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDL 494 (671)
Q Consensus 416 ~~~~~~g~-~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 494 (671)
.++...|+ +++|+..|++..+.. +.+...|+.+...+.+.|++++|+..|+++.+.. .-+...|..+..++.+.|++
T Consensus 139 ~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~ 216 (382)
T 2h6f_A 139 VLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVLVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLW 216 (382)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCC
T ss_pred HHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCCh
Confidence 88899996 999999999999876 5578899999999999999999999999998875 34778899999999999999
Q ss_pred HHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHh-cCCHHHH-----HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC--CH
Q 042546 495 DKAADCFQKMVEKEGTSHAGYAIDLLVNTYCS-KNRAIDA-----CKFVHNCVREYDLKPWHTTYEELIKNLLVQR--GF 566 (671)
Q Consensus 495 ~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~-~g~~~~A-----~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g--~~ 566 (671)
++|++.++++.+ .. .-+...|+.+..+|.+ .|..++| ...|++.... -.-+...|+.+...+.+.| ++
T Consensus 217 ~eAl~~~~~al~-l~-P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l--~P~~~~a~~~l~~ll~~~g~~~~ 292 (382)
T 2h6f_A 217 DNELQYVDQLLK-ED-VRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKL--VPHNESAWNYLKGILQDRGLSKY 292 (382)
T ss_dssp TTHHHHHHHHHH-HC-TTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHTTTCGGGC
T ss_pred HHHHHHHHHHHH-hC-CCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHccCccch
Confidence 999999999988 32 2256788888888888 6665777 4778887763 2235668888888888877 68
Q ss_pred HHHHHHHHHHHhCCCCCCHHHH----HHHHHhcC---------ChHHHHHHHHHh-hhCCCCCHHHHHHHHHHHHHc
Q 042546 567 KDALSLLCLMKDHGFPPFVDPF----IKYVSKSG---------TSDDAIAFLKGM-TSKRFPSMSVVLCLFAAFFQA 629 (671)
Q Consensus 567 ~~A~~l~~~m~~~~~~p~~~t~----~~~l~~~g---------~~~~A~~~~~~m-~~~~~p~~~~~~~l~~~~~~~ 629 (671)
++|++.+.++ ...|+.... ...|.+.| .+++|+++++++ .+..+.....|..+...+...
T Consensus 293 ~~a~~~~~~~---~~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 293 PNLLNQLLDL---QPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQSK 366 (382)
T ss_dssp HHHHHHHHHH---TTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHh---ccCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence 9999999887 345665332 44555543 358999999999 777776778888887776553
No 59
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.22 E-value=9.4e-09 Score=101.43 Aligned_cols=218 Identities=10% Similarity=0.011 Sum_probs=143.0
Q ss_pred HHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHc-------cCCh-------HHHHHHHHHHHHcCCCC-CHHHHHHHHHHH
Q 042546 282 KKALIFFRWAEESGFVKHDESSYNAMASVLGR-------EDCI-------DRFWKVLDEMRSKGYEM-EMETCVKVLGRF 346 (671)
Q Consensus 282 ~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~-------~g~~-------~~A~~~~~~m~~~g~~p-~~~t~~~li~~~ 346 (671)
+.|..+|++..... +.+...|..+...+.+ .|++ ++|..+|++..+. +.| +...|..+...+
T Consensus 33 ~~a~~~~~~al~~~--p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~-~~p~~~~~~~~~~~~~ 109 (308)
T 2ond_A 33 KRVMFAYEQCLLVL--GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST-LLKKNMLLYFAYADYE 109 (308)
T ss_dssp HHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTT-TTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHH-hCcccHHHHHHHHHHH
Confidence 57778888876533 5678888888877763 4775 7888888887763 134 456778888888
Q ss_pred HhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCCHH
Q 042546 347 SERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDA-MLNSVLKALISVGRMG 425 (671)
Q Consensus 347 ~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~ 425 (671)
.+.|++++|.++|++..+. .|+. .. +|..+...+.+.|+++
T Consensus 110 ~~~~~~~~A~~~~~~al~~--~p~~------------------------------------~~~~~~~~~~~~~~~~~~~ 151 (308)
T 2ond_A 110 ESRMKYEKVHSIYNRLLAI--EDID------------------------------------PTLVYIQYMKFARRAEGIK 151 (308)
T ss_dssp HHTTCHHHHHHHHHHHHTS--SSSC------------------------------------THHHHHHHHHHHHHHHCHH
T ss_pred HhcCCHHHHHHHHHHHHhc--cccC------------------------------------ccHHHHHHHHHHHHhcCHH
Confidence 8888888888888877752 2211 11 4666666677777788
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 042546 426 ECNKILKAMEEGGFIASSNMKSKIAFRLS-SAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKM 504 (671)
Q Consensus 426 ~A~~~~~~m~~~g~~~~~~~~~~li~~~~-~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 504 (671)
+|..+|++..+.. +++...|........ ..|++++|.++|++..+.. +-+...|..++..+.+.|+.++|..+|++.
T Consensus 152 ~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~a 229 (308)
T 2ond_A 152 SGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERV 229 (308)
T ss_dssp HHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 8888888777654 234444443333322 2577777777777766542 235566777777777777777777777777
Q ss_pred HHcC-CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 042546 505 VEKE-GTSH--AGYAIDLLVNTYCSKNRAIDACKFVHNCVRE 543 (671)
Q Consensus 505 ~~~~-g~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 543 (671)
.+ . .+.| ....|..++..+.+.|+.++|..+++++.+.
T Consensus 230 l~-~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~ 270 (308)
T 2ond_A 230 LT-SGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp HH-SSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred Hh-ccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 66 3 2344 3456666666666677777777777776653
No 60
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.21 E-value=1.6e-08 Score=99.84 Aligned_cols=215 Identities=8% Similarity=0.002 Sum_probs=154.6
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-------hcCCH-------HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 042546 425 GECNKILKAMEEGGFIASSNMKSKIAFRLS-------SAGKK-------DEANEFMDHMEASGSDVGDKMWVSLIKGHCV 490 (671)
Q Consensus 425 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~-------~~g~~-------~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~ 490 (671)
++|..+|++..+.. +.+...|..+...+. +.|++ ++|..+|++..+.-.+-+...|..+...+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 57778888877653 456677877777765 35775 8888888888873112355678888888888
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCC-HH-HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-hcCCHH
Q 042546 491 AGDLDKAADCFQKMVEKEGTSHA-GY-AIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLL-VQRGFK 567 (671)
Q Consensus 491 ~g~~~~a~~~~~~m~~~~g~~p~-~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~-~~g~~~ 567 (671)
.|++++|.++|++..+ +.|+ .. .|..+...+.+.|++++|..+|++..+. ..++...|........ ..|+.+
T Consensus 112 ~~~~~~A~~~~~~al~---~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~a~~~~~~~~~~~ 186 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLA---IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--ARTRHHVYVTAALMEYYCSKDKS 186 (308)
T ss_dssp TTCHHHHHHHHHHHHT---SSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTS--TTCCTHHHHHHHHHHHHTSCCHH
T ss_pred cCCHHHHHHHHHHHHh---ccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHcCCHH
Confidence 8999999999988876 3443 22 7888888888889999999999888753 2234445544333322 368899
Q ss_pred HHHHHHHHHHhCCCCCCHHHH----HHHHHhcCChHHHHHHHHHhhhCC--CC--CHHHHHHHHHHHHHcCCHHHHHHHH
Q 042546 568 DALSLLCLMKDHGFPPFVDPF----IKYVSKSGTSDDAIAFLKGMTSKR--FP--SMSVVLCLFAAFFQARRHSEAQDLL 639 (671)
Q Consensus 568 ~A~~l~~~m~~~~~~p~~~t~----~~~l~~~g~~~~A~~~~~~m~~~~--~p--~~~~~~~l~~~~~~~g~~~~A~~~~ 639 (671)
+|.++|++..+. .|+...+ +..+.+.|+.++|..+|++..... +| ....|..++..+.+.|+.++|..++
T Consensus 187 ~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~ 264 (308)
T 2ond_A 187 VAFKIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVE 264 (308)
T ss_dssp HHHHHHHHHHHH--HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred HHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999888763 4554332 455567889999999998888852 33 5678888888888899999999988
Q ss_pred HhchHhhh
Q 042546 640 SKCPRYVR 647 (671)
Q Consensus 640 ~~m~~~~~ 647 (671)
+++.+..+
T Consensus 265 ~~a~~~~p 272 (308)
T 2ond_A 265 KRRFTAFR 272 (308)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHcc
Confidence 88765444
No 61
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.21 E-value=3.5e-09 Score=110.49 Aligned_cols=338 Identities=11% Similarity=-0.053 Sum_probs=211.8
Q ss_pred CChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHccCCh---HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCC-----
Q 042546 279 DEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCI---DRFWKVLDEMRSKGYEMEMETCVKVLGRFSERN----- 350 (671)
Q Consensus 279 ~~~~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~g~~---~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g----- 350 (671)
|++++|.+.|+...+. .+...+..+-..|...|+. ++|.+.|++..+. +...+..+-..+...+
T Consensus 17 g~~~~A~~~~~~aa~~----g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~~~~~~~~ 88 (452)
T 3e4b_A 17 GDTVTAQQNYQQLAEL----GYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAAKPGATEA 88 (452)
T ss_dssp HHHHHHHHHHHHHHHH----TCCTGGGTCC--------------------------------CHHHHHHHHHTC--CCHH
T ss_pred CCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHhCCCCCCc
Confidence 8999999999998763 2445556666667778888 8999999988854 4555666666455554
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcccH-HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 042546 351 MVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDM-RLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNK 429 (671)
Q Consensus 351 ~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 429 (671)
++++|...|++..+.|... .+..|-..|...+..+. ..+.+.+......|. ...+..+...|...+.++++..
T Consensus 89 ~~~~A~~~~~~Aa~~g~~~---A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~---~~a~~~Lg~~y~~~~~~~~~~~ 162 (452)
T 3e4b_A 89 EHHEAESLLKKAFANGEGN---TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGY---PEAGLAQVLLYRTQGTYDQHLD 162 (452)
T ss_dssp HHHHHHHHHHHHHHTTCSS---CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTC---TTHHHHHHHHHHHHTCGGGGHH
T ss_pred CHHHHHHHHHHHHHCCCHH---HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCC---HHHHHHHHHHHHcCCCcccCHH
Confidence 7899999999999866543 44445555555443221 223333333333443 3456677778888885555444
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc----CCHHHHHHHHH
Q 042546 430 ILKAMEEGGFIASSNMKSKIAFRLSSAG---KKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVA----GDLDKAADCFQ 502 (671)
Q Consensus 430 ~~~~m~~~g~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~----g~~~~a~~~~~ 502 (671)
......+.-...+...+..|...|.+.| +.++|.+.|++..+.| .++...+..+-..|... ++.++|.++|+
T Consensus 163 ~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~ 241 (452)
T 3e4b_A 163 DVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQALLE 241 (452)
T ss_dssp HHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHH
Confidence 4333332211333448888999999999 9999999999999888 46666666677777655 79999999999
Q ss_pred HHHHcCCCCCCHHHHHHHHHH-H--HhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-----CHHHHHHHHH
Q 042546 503 KMVEKEGTSHAGYAIDLLVNT-Y--CSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQR-----GFKDALSLLC 574 (671)
Q Consensus 503 ~m~~~~g~~p~~~~~~~li~~-~--~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g-----~~~~A~~l~~ 574 (671)
+.. .-+...+..|-.. | ...++.++|.+.|.+..+. | +...+..|-..|. .| +.++|.+.|+
T Consensus 242 ~aa-----~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~-g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~ 311 (452)
T 3e4b_A 242 KIA-----PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA-D---QPRAELLLGKLYY-EGKWVPADAKAAEAHFE 311 (452)
T ss_dssp HHG-----GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHH
T ss_pred HHc-----CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHH
Confidence 975 2244556666665 3 4689999999999998864 4 5667777777776 55 9999999999
Q ss_pred HHHhCCCCCCHHHHHHHHHh----cCChHHHHHHHHHhhhCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHhchH
Q 042546 575 LMKDHGFPPFVDPFIKYVSK----SGTSDDAIAFLKGMTSKRFPSMSVVLCLFAAFFQ----ARRHSEAQDLLSKCPR 644 (671)
Q Consensus 575 ~m~~~~~~p~~~t~~~~l~~----~g~~~~A~~~~~~m~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~ 644 (671)
+.. .|...-...+...|.. ..+.++|..+|+...+.+.++ ....|...|.. ..+.++|..++++..+
T Consensus 312 ~Aa-~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~--A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~ 386 (452)
T 3e4b_A 312 KAV-GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNS--ADFAIAQLFSQGKGTKPDPLNAYVFSQLAKA 386 (452)
T ss_dssp TTT-TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTT--HHHHHHHHHHSCTTBCCCHHHHHHHHHHHHT
T ss_pred HHh-CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHH--HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHH
Confidence 887 4322211222333333 348999999999988876544 44566666664 4588999999988554
No 62
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.19 E-value=1.1e-09 Score=112.98 Aligned_cols=133 Identities=13% Similarity=-0.015 Sum_probs=57.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC----CCHH
Q 042546 445 MKSKIAFRLSSAGKKDEANEFMDHMEASGS-DVG----DKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTS----HAGY 515 (671)
Q Consensus 445 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~----p~~~ 515 (671)
++..+...|...|++++|.+.+++..+... .++ ..++..+...|...|++++|.+.+++..+...-. ....
T Consensus 225 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 304 (411)
T 4a1s_A 225 ACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQ 304 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 444455555555555555555555432110 011 1244445555555555555555555443300000 0123
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 042546 516 AIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPW----HTTYEELIKNLLVQRGFKDALSLLCLMK 577 (671)
Q Consensus 516 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~l~~~m~ 577 (671)
++..+...|...|++++|...|++......-.++ ..++..+...|.+.|++++|.+.+++..
T Consensus 305 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 370 (411)
T 4a1s_A 305 SCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHL 370 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 3444445555555555555555544321000001 1234444444445555555555555443
No 63
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.19 E-value=1.7e-10 Score=114.03 Aligned_cols=247 Identities=12% Similarity=0.029 Sum_probs=166.4
Q ss_pred CCHHHHHHHHHHHHccCChHHHHHHHHHHHHc-------CCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCH
Q 042546 299 HDESSYNAMASVLGREDCIDRFWKVLDEMRSK-------GYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSV 371 (671)
Q Consensus 299 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~ 371 (671)
.+..+|..+...+...|++++|..+|+++.+. .......++..+...|...|++++|...+++..+.
T Consensus 25 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------ 98 (311)
T 3nf1_A 25 ARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAI------ 98 (311)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH------
Confidence 34678889999999999999999999998773 22234677888999999999999999999987631
Q ss_pred HHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC------CC-CCCHH
Q 042546 372 NCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEG------GF-IASSN 444 (671)
Q Consensus 372 ~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~-~~~~~ 444 (671)
..............++..+...|...|++++|...|++..+. +- +....
T Consensus 99 ------------------------~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 154 (311)
T 3nf1_A 99 ------------------------REKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAK 154 (311)
T ss_dssp ------------------------HHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred ------------------------HHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHH
Confidence 000000011112345788889999999999999999988753 21 22345
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC------CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-------CC
Q 042546 445 MKSKIAFRLSSAGKKDEANEFMDHMEAS------GSDV-GDKMWVSLIKGHCVAGDLDKAADCFQKMVEKE-------GT 510 (671)
Q Consensus 445 ~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-------g~ 510 (671)
.+..+...|...|++++|.+.++++.+. +..| ...++..+...|...|++++|.+.++++.+ . ..
T Consensus 155 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-~~~~~~~~~~ 233 (311)
T 3nf1_A 155 QLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT-RAHEREFGSV 233 (311)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-HHHHHHHC--
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-HHHHhcCCCC
Confidence 7888899999999999999999998764 2122 245688888999999999999999998875 2 11
Q ss_pred CCC-------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 042546 511 SHA-------GYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKD 578 (671)
Q Consensus 511 ~p~-------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 578 (671)
.+. ...+..+...+...+.+.+|...+...... ...+..+|..+...|.+.|++++|.+.+++..+
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 234 DDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVD--SPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp ----CCHHHHHHHHHHC-------CCSCCCC-----------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCC--CchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 111 112222333344455566666666665431 222445777888888888999999888887754
No 64
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.18 E-value=4.5e-10 Score=116.07 Aligned_cols=274 Identities=14% Similarity=0.036 Sum_probs=193.6
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 042546 337 ETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLK 416 (671)
Q Consensus 337 ~t~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~ 416 (671)
..+..+...+...|++++|...|++..+. .|+.... -..++..+..
T Consensus 49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~--~~~~~~~--------------------------------~~~~~~~lg~ 94 (411)
T 4a1s_A 49 LELALEGERLCNAGDCRAGVAFFQAAIQA--GTEDLRT--------------------------------LSAIYSQLGN 94 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSCHHH--------------------------------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHh--cccChhH--------------------------------HHHHHHHHHH
Confidence 34445667788999999999999998863 2221100 0023667777
Q ss_pred HHHhcCCHHHHHHHHHHHHHC----C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CC-CCCHHHHHHHHH
Q 042546 417 ALISVGRMGECNKILKAMEEG----G-FIASSNMKSKIAFRLSSAGKKDEANEFMDHMEAS----GS-DVGDKMWVSLIK 486 (671)
Q Consensus 417 ~~~~~g~~~~A~~~~~~m~~~----g-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~-~~~~~~~~~li~ 486 (671)
.|...|++++|...|++..+. + ......++..+...|...|++++|.+.+++..+. +- .....++..+..
T Consensus 95 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~ 174 (411)
T 4a1s_A 95 AYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGN 174 (411)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHH
Confidence 888899999999998887642 1 1223467788888899999999999999887543 11 112456788888
Q ss_pred HHHhcCC-----------------HHHHHHHHHHHHHc---CCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC
Q 042546 487 GHCVAGD-----------------LDKAADCFQKMVEK---EGTSH-AGYAIDLLVNTYCSKNRAIDACKFVHNCVREYD 545 (671)
Q Consensus 487 ~~~~~g~-----------------~~~a~~~~~~m~~~---~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 545 (671)
.|...|+ +++|.+.+++..+. .+-.+ ...++..+...|...|++++|.+.|++......
T Consensus 175 ~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 254 (411)
T 4a1s_A 175 VYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAR 254 (411)
T ss_dssp HHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence 8899999 89999888876541 11111 234677788889999999999999988765311
Q ss_pred CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CCH-------HHHHHHHHhcCChHHHHHHHHHhhhCC-
Q 042546 546 LKPW----HTTYEELIKNLLVQRGFKDALSLLCLMKDHGFP-PFV-------DPFIKYVSKSGTSDDAIAFLKGMTSKR- 612 (671)
Q Consensus 546 ~~p~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~-p~~-------~t~~~~l~~~g~~~~A~~~~~~m~~~~- 612 (671)
-.++ ...+..+...|...|++++|.+.+++..+.... .+. ..+...+...|++++|..++++.....
T Consensus 255 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 334 (411)
T 4a1s_A 255 EFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQ 334 (411)
T ss_dssp HHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred hcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 1112 227778888899999999999999887642111 111 122455678999999999999877621
Q ss_pred -CC----CHHHHHHHHHHHHHcCCHHHHHHHHHhchH
Q 042546 613 -FP----SMSVVLCLFAAFFQARRHSEAQDLLSKCPR 644 (671)
Q Consensus 613 -~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 644 (671)
.. ....|..+..+|.+.|++++|.+.+++...
T Consensus 335 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 371 (411)
T 4a1s_A 335 ELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQ 371 (411)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 11 245788899999999999999999998654
No 65
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.18 E-value=2.4e-09 Score=112.48 Aligned_cols=211 Identities=11% Similarity=-0.019 Sum_probs=166.3
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 042546 424 MGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKK-DEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQ 502 (671)
Q Consensus 424 ~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 502 (671)
++++...+++..... +.+...|..+...|...|++ ++|.+.|++..+.. +-+...|..+...|...|++++|.+.|+
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 556666776655433 34677888888888888888 89988888887764 3357788888888888999999999998
Q ss_pred HHHHcCCCCCCHHHHHHHHHHHHhc---------CCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc--------CC
Q 042546 503 KMVEKEGTSHAGYAIDLLVNTYCSK---------NRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQ--------RG 565 (671)
Q Consensus 503 ~m~~~~g~~p~~~~~~~li~~~~~~---------g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~--------g~ 565 (671)
+..+ +.|+...+..+...|... |++++|...|++..+. ..-+...|..+..+|... |+
T Consensus 162 ~al~---~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~~~~g~ 236 (474)
T 4abn_A 162 GALT---HCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM--DVLDGRSWYILGNAYLSLYFNTGQNPKI 236 (474)
T ss_dssp HHHT---TCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHTTCCHHH
T ss_pred HHHh---hCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHhhccccch
Confidence 8876 347777888888888888 8899999999888764 233567788888888888 88
Q ss_pred HHHHHHHHHHHHhCCCCC---CH-HH---HHHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 042546 566 FKDALSLLCLMKDHGFPP---FV-DP---FIKYVSKSGTSDDAIAFLKGMTSKRFPSMSVVLCLFAAFFQARRHSEAQDL 638 (671)
Q Consensus 566 ~~~A~~l~~~m~~~~~~p---~~-~t---~~~~l~~~g~~~~A~~~~~~m~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 638 (671)
+++|++.|++..+. .| +. .. +...|...|++++|...|++..+..+.+...+..+..++...|++++|.+.
T Consensus 237 ~~~A~~~~~~al~~--~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~ 314 (474)
T 4abn_A 237 SQQALSAYAQAEKV--DRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLES 314 (474)
T ss_dssp HHHHHHHHHHHHHH--CGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988864 44 22 22 245667889999999999998887777888899999999999999999988
Q ss_pred HHhch
Q 042546 639 LSKCP 643 (671)
Q Consensus 639 ~~~m~ 643 (671)
+.++.
T Consensus 315 ~~~~~ 319 (474)
T 4abn_A 315 KGKTK 319 (474)
T ss_dssp TTTCC
T ss_pred hcccc
Confidence 87764
No 66
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.16 E-value=1.7e-09 Score=107.90 Aligned_cols=267 Identities=10% Similarity=0.018 Sum_probs=129.1
Q ss_pred CCChHHHHHHHHHHHHcCCCCCC----HHHHHHHHHHHHccCChHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHh
Q 042546 278 GDEPKKALIFFRWAEESGFVKHD----ESSYNAMASVLGREDCIDRFWKVLDEMRSK----GYEM-EMETCVKVLGRFSE 348 (671)
Q Consensus 278 ~~~~~~A~~~f~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~t~~~li~~~~~ 348 (671)
.|++++|...|++..+.. +.+ ...|..+...|...|++++|.+.+++..+. +-.| ...++..+...+..
T Consensus 18 ~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~ 95 (338)
T 3ro2_A 18 SGDCRAGVSFFEAAVQVG--TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKV 95 (338)
T ss_dssp TTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHH
Confidence 366666666666665431 222 245556666666666666666666654332 1111 13455556666666
Q ss_pred CCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC-----
Q 042546 349 RNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGR----- 423 (671)
Q Consensus 349 ~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~----- 423 (671)
.|++++|...+.+..+.. -..+.. .....++..+...|...|+
T Consensus 96 ~g~~~~A~~~~~~al~~~---------------~~~~~~-----------------~~~~~~~~~l~~~~~~~~~~~~~~ 143 (338)
T 3ro2_A 96 LGNFDEAIVCCQRHLDIS---------------RELNDK-----------------VGEARALYNLGNVYHAKGKSFGCP 143 (338)
T ss_dssp TTCHHHHHHHHHHHHHHH---------------HHTTCH-----------------HHHHHHHHHHHHHHHHHHHTSSSS
T ss_pred ccCHHHHHHHHHHHHHHH---------------HHhcCc-----------------hHHHHHHHHHHHHHHHcCcccccc
Confidence 666666666666554210 000000 0001234445555555555
Q ss_pred ---------------HHHHHHHHHHHHHC----CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----H
Q 042546 424 ---------------MGECNKILKAMEEG----GF-IASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGS-DVG----D 478 (671)
Q Consensus 424 ---------------~~~A~~~~~~m~~~----g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~~~----~ 478 (671)
+++|.+.+++..+. +- .....++..+...|...|++++|.+.+++..+... .++ .
T Consensus 144 ~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~ 223 (338)
T 3ro2_A 144 GPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAER 223 (338)
T ss_dssp SCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred hhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHH
Confidence 56666655554321 10 11123455555666666666666666665542100 011 1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCC----H
Q 042546 479 KMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHA----GYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPW----H 550 (671)
Q Consensus 479 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~----~ 550 (671)
.++..+...+...|++++|.+.+++..+...-.++ ..++..+...|...|++++|...+++......-..+ .
T Consensus 224 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 303 (338)
T 3ro2_A 224 RAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEG 303 (338)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHH
Confidence 24555555566666666666666555431000011 334455555556666666666665554332100011 2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 042546 551 TTYEELIKNLLVQRGFKDALSLLCLMKD 578 (671)
Q Consensus 551 ~~~~~li~~~~~~g~~~~A~~l~~~m~~ 578 (671)
.++..+...|.+.|++++|.+.+++..+
T Consensus 304 ~~~~~la~~~~~~g~~~~A~~~~~~a~~ 331 (338)
T 3ro2_A 304 RACWSLGNAYTALGNHDQAMHFAEKHLE 331 (338)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 2444455555555555555555555543
No 67
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.16 E-value=1.6e-09 Score=108.00 Aligned_cols=273 Identities=13% Similarity=-0.007 Sum_probs=192.9
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 042546 338 TCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKA 417 (671)
Q Consensus 338 t~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~ 417 (671)
.+......+...|++++|...|+++.+. .|+.... -...+..+...
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~--~~~~~~~--------------------------------~~~~~~~l~~~ 52 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQV--GTEDLKT--------------------------------LSAIYSQLGNA 52 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSCHHH--------------------------------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhh--CcccHHH--------------------------------HHHHHHHHHHH
Confidence 4445566788899999999999998863 2221100 01246677788
Q ss_pred HHhcCCHHHHHHHHHHHHHC----CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHH
Q 042546 418 LISVGRMGECNKILKAMEEG----GFI-ASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGS-DVG----DKMWVSLIKG 487 (671)
Q Consensus 418 ~~~~g~~~~A~~~~~~m~~~----g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~~~----~~~~~~li~~ 487 (671)
|...|++++|.+.+++..+. +-. ....++..+...|...|++++|...+++..+... .++ ..++..+...
T Consensus 53 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~ 132 (338)
T 3ro2_A 53 YFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNV 132 (338)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHH
Confidence 88999999999998876542 111 2255778888899999999999999988754211 122 3477888888
Q ss_pred HHhcCC--------------------HHHHHHHHHHHHHc---CCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 042546 488 HCVAGD--------------------LDKAADCFQKMVEK---EGTSH-AGYAIDLLVNTYCSKNRAIDACKFVHNCVRE 543 (671)
Q Consensus 488 ~~~~g~--------------------~~~a~~~~~~m~~~---~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 543 (671)
+...|+ +++|.+.+++..+. .+-.| ...++..+...|...|++++|...+++..+.
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 212 (338)
T 3ro2_A 133 YHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLI 212 (338)
T ss_dssp HHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 899999 99999888876541 11111 2346777888899999999999999887643
Q ss_pred CCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCH-------HHHHHHHHhcCChHHHHHHHHHhhhC
Q 042546 544 YDLKPW----HTTYEELIKNLLVQRGFKDALSLLCLMKDHGF-PPFV-------DPFIKYVSKSGTSDDAIAFLKGMTSK 611 (671)
Q Consensus 544 ~~~~p~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~-~p~~-------~t~~~~l~~~g~~~~A~~~~~~m~~~ 611 (671)
..-.++ ..++..+...+...|++++|.+.+++..+... .++. ..+...+...|++++|...+++....
T Consensus 213 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 292 (338)
T 3ro2_A 213 AKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAI 292 (338)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 111122 23777888889999999999999998764211 1111 11245567899999999999887652
Q ss_pred CC--C----CHHHHHHHHHHHHHcCCHHHHHHHHHhchH
Q 042546 612 RF--P----SMSVVLCLFAAFFQARRHSEAQDLLSKCPR 644 (671)
Q Consensus 612 ~~--p----~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 644 (671)
.+ . ....+..+...|.+.|++++|.+.+++..+
T Consensus 293 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 331 (338)
T 3ro2_A 293 AQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 331 (338)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 11 1 245788899999999999999999998654
No 68
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.16 E-value=1.4e-09 Score=112.02 Aligned_cols=266 Identities=11% Similarity=0.021 Sum_probs=194.6
Q ss_pred CChHHHHHHHHHHHHcCCCCCC----HHHHHHHHHHHHccCChHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhC
Q 042546 279 DEPKKALIFFRWAEESGFVKHD----ESSYNAMASVLGREDCIDRFWKVLDEMRSK----GYEM-EMETCVKVLGRFSER 349 (671)
Q Consensus 279 ~~~~~A~~~f~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~t~~~li~~~~~~ 349 (671)
|++++|...|++..... +.+ ..+|..+...|...|++++|...|++.... +-.| ...++..+...+...
T Consensus 23 g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~ 100 (406)
T 3sf4_A 23 GDCRAGVSFFEAAVQVG--TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVL 100 (406)
T ss_dssp TCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHc
Confidence 99999999999987642 233 367888999999999999999999986543 2122 255778888999999
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC------
Q 042546 350 NMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGR------ 423 (671)
Q Consensus 350 g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~------ 423 (671)
|++++|...+.+..+.. -..+ + ......++..+...|...|+
T Consensus 101 g~~~~A~~~~~~al~~~---------------~~~~--~---------------~~~~~~~~~~l~~~~~~~g~~~~~~~ 148 (406)
T 3sf4_A 101 GNFDEAIVCCQRHLDIS---------------RELN--D---------------KVGEARALYNLGNVYHAKGKSFGCPG 148 (406)
T ss_dssp TCHHHHHHHHHHHHHHH---------------HHHT--C---------------HHHHHHHHHHHHHHHHHHHHTCC---
T ss_pred CCHHHHHHHHHHHHHHH---------------Hhcc--c---------------ccchHHHHHHHHHHHHHcCCcccccc
Confidence 99999999999876310 0000 0 00012356777778888888
Q ss_pred --------------HHHHHHHHHHHHHC----CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HH
Q 042546 424 --------------MGECNKILKAMEEG----GF-IASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGS-DVG----DK 479 (671)
Q Consensus 424 --------------~~~A~~~~~~m~~~----g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~~~----~~ 479 (671)
+++|...+++..+. +- .....++..+...|...|++++|.+.+++..+... .++ ..
T Consensus 149 ~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 228 (406)
T 3sf4_A 149 PQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERR 228 (406)
T ss_dssp ----CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHH
Confidence 88998888876532 11 11235788888999999999999999998764210 122 23
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCC----HH
Q 042546 480 MWVSLIKGHCVAGDLDKAADCFQKMVEK---EGTSHA-GYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPW----HT 551 (671)
Q Consensus 480 ~~~~li~~~~~~g~~~~a~~~~~~m~~~---~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~----~~ 551 (671)
++..+...|...|++++|...+++..+. .+..+. ..++..+...|...|++++|...+++......-.++ ..
T Consensus 229 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 308 (406)
T 3sf4_A 229 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGR 308 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHH
Confidence 7888889999999999999999987651 111111 557788889999999999999999987653211222 45
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 042546 552 TYEELIKNLLVQRGFKDALSLLCLMKD 578 (671)
Q Consensus 552 ~~~~li~~~~~~g~~~~A~~l~~~m~~ 578 (671)
++..+...|...|++++|.+.+++..+
T Consensus 309 ~~~~la~~~~~~g~~~~A~~~~~~al~ 335 (406)
T 3sf4_A 309 ACWSLGNAYTALGNHDQAMHFAEKHLE 335 (406)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 777888889999999999999998753
No 69
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.15 E-value=1.3e-08 Score=91.67 Aligned_cols=167 Identities=11% Similarity=0.040 Sum_probs=135.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 042546 407 TDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIK 486 (671)
Q Consensus 407 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~ 486 (671)
+..+|..+-..|.+.|++++|.+.|++..+.. +-+..+|..+...|.+.|++++|...+....... ..+...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence 44668888899999999999999999988765 4567888889999999999999999999887664 345667777788
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 042546 487 GHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGF 566 (671)
Q Consensus 487 ~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~ 566 (671)
.+...++++.|.+.+.+..+ . .+-+...+..+...|.+.|++++|.+.|++..+. -+.+...|..+...|.+.|++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~-~-~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~lg~~~~~~g~~ 157 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIA-L-NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISI--KPGFIRAYQSIGLAYEGKGLR 157 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHH-H-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHcCCHHHHHHHHHHHHH-h-CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHh--cchhhhHHHHHHHHHHHCCCH
Confidence 88889999999999988876 2 2335667888888889999999999999988764 233567788888888899999
Q ss_pred HHHHHHHHHHHhC
Q 042546 567 KDALSLLCLMKDH 579 (671)
Q Consensus 567 ~~A~~l~~~m~~~ 579 (671)
++|++.|++..+.
T Consensus 158 ~~A~~~~~~al~~ 170 (184)
T 3vtx_A 158 DEAVKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhC
Confidence 9999999888763
No 70
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.13 E-value=3.9e-06 Score=90.71 Aligned_cols=213 Identities=12% Similarity=0.012 Sum_probs=154.9
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH-HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 042546 394 KVVRVFRENGNVLTDAMLNSVLKALISVGRMGECN-KILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEAS 472 (671)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~-~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 472 (671)
.++++.... .+.+...|-..+..+...|+.++|. ++|++.... .+.+...|-..+....+.|++++|.++|+.+.+.
T Consensus 330 ~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~ 407 (679)
T 4e6h_A 330 YVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDR 407 (679)
T ss_dssp HHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 344444433 3446677888888888889999996 999998864 3456667888888899999999999999998753
Q ss_pred CC---------CCC------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-C-CCCCHHHHHHHHHHHHhc-C
Q 042546 473 GS---------DVG------------DKMWVSLIKGHCVAGDLDKAADCFQKMVEKE-G-TSHAGYAIDLLVNTYCSK-N 528 (671)
Q Consensus 473 g~---------~~~------------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-g-~~p~~~~~~~li~~~~~~-g 528 (671)
.. .|+ ...|...+....+.|..+.|.++|.+..+ . + ..+......+.+. .+. +
T Consensus 408 l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~-~~~~~~~~lyi~~A~lE--~~~~~ 484 (679)
T 4e6h_A 408 IHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRR-LKKLVTPDIYLENAYIE--YHISK 484 (679)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH-TGGGSCTHHHHHHHHHH--HTTTS
T ss_pred HHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hcCCCChHHHHHHHHHH--HHhCC
Confidence 10 142 24688888888888999999999999988 4 2 3344444333333 344 4
Q ss_pred CHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHH----HHHHHhcCChHHHHH
Q 042546 529 RAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPF-VDPF----IKYVSKSGTSDDAIA 603 (671)
Q Consensus 529 ~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~-~~t~----~~~l~~~g~~~~A~~ 603 (671)
+.+.|.++|+...+++ .-+...|...++-....|+.+.|..+|++.......+. ...+ +..-.+.|+.+.+.+
T Consensus 485 d~e~Ar~ife~~Lk~~--p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~ 562 (679)
T 4e6h_A 485 DTKTACKVLELGLKYF--ATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRT 562 (679)
T ss_dssp CCHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHH
T ss_pred CHHHHHHHHHHHHHHC--CCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 5899999999998763 34566677888878889999999999999987643222 2233 333368899999999
Q ss_pred HHHHhhhCCC
Q 042546 604 FLKGMTSKRF 613 (671)
Q Consensus 604 ~~~~m~~~~~ 613 (671)
+.+++....|
T Consensus 563 v~~R~~~~~P 572 (679)
T 4e6h_A 563 LEKRFFEKFP 572 (679)
T ss_dssp HHHHHHHHST
T ss_pred HHHHHHHhCC
Confidence 9999988654
No 71
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.11 E-value=2e-08 Score=90.49 Aligned_cols=166 Identities=13% Similarity=0.078 Sum_probs=103.1
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 042546 300 DESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLR 379 (671)
Q Consensus 300 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~ 379 (671)
+...|..+-..|.+.|++++|.+.|++..+.. +-+..+|..+...|.+.|++++|...+......
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~-------------- 68 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL-------------- 68 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------------
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--------------
Confidence 45667777777777777777777777766653 124666677777777777777777777666532
Q ss_pred HHHhcCcccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 042546 380 KIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKK 459 (671)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 459 (671)
.+.+...+..+...+...++++.|...+.+..+.. +.+...+..+...|.+.|++
T Consensus 69 ------------------------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~ 123 (184)
T 3vtx_A 69 ------------------------DTTSAEAYYILGSANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEH 123 (184)
T ss_dssp ------------------------CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred ------------------------CchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCc
Confidence 11122234444455566666667766666665543 34555666666666666777
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 042546 460 DEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVE 506 (671)
Q Consensus 460 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 506 (671)
++|++.|++..+.. +.+..+|..+...|.+.|++++|.+.|++..+
T Consensus 124 ~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 169 (184)
T 3vtx_A 124 DKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDEAVKYFKKALE 169 (184)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 77777666666543 23455666666666666666666666666655
No 72
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.10 E-value=5e-09 Score=110.04 Aligned_cols=217 Identities=9% Similarity=-0.045 Sum_probs=168.3
Q ss_pred CChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHccCCh-HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHH
Q 042546 279 DEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCI-DRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVD 357 (671)
Q Consensus 279 ~~~~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~ 357 (671)
..+++++..++..... .+.+...|..+-..|...|++ ++|.+.|++..+.. +-+...|..+...|.+.|++++|.+
T Consensus 82 ~~~~~al~~l~~~~~~--~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~ 158 (474)
T 4abn_A 82 EEMEKTLQQMEEVLGS--AQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHT 158 (474)
T ss_dssp HHHHHHHHHHHHHHTT--CCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHHhcc--CchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 4577788888877643 255789999999999999999 99999999998863 2258899999999999999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc---------CCHHHHH
Q 042546 358 LYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISV---------GRMGECN 428 (671)
Q Consensus 358 l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~---------g~~~~A~ 428 (671)
.|++..+. .|+. ..+..+...|... |++++|.
T Consensus 159 ~~~~al~~--~p~~-------------------------------------~~~~~lg~~~~~~~~~~~~~~~g~~~~A~ 199 (474)
T 4abn_A 159 CFSGALTH--CKNK-------------------------------------VSLQNLSMVLRQLQTDSGDEHSRHVMDSV 199 (474)
T ss_dssp HHHHHHTT--CCCH-------------------------------------HHHHHHHHHHTTCCCSCHHHHHHHHHHHH
T ss_pred HHHHHHhh--CCCH-------------------------------------HHHHHHHHHHHHhccCChhhhhhhHHHHH
Confidence 99998864 3442 3344455555555 8899999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhc--------CCHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHhcCCHHHHH
Q 042546 429 KILKAMEEGGFIASSNMKSKIAFRLSSA--------GKKDEANEFMDHMEASGSD--VGDKMWVSLIKGHCVAGDLDKAA 498 (671)
Q Consensus 429 ~~~~~m~~~g~~~~~~~~~~li~~~~~~--------g~~~~A~~~~~~m~~~g~~--~~~~~~~~li~~~~~~g~~~~a~ 498 (671)
+.|++..+.. +.+...|..+..+|... |++++|.+.|++..+.... -+...|..+...|...|++++|.
T Consensus 200 ~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~ 278 (474)
T 4abn_A 200 RQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEAL 278 (474)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHH
Confidence 9999988765 45678888888888888 8899999999988875310 36778888888888889999998
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 042546 499 DCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNC 540 (671)
Q Consensus 499 ~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 540 (671)
+.|++..+ .. +-+...+..+..++...|++++|.+.+..+
T Consensus 279 ~~~~~al~-l~-p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 279 EGFSQAAA-LD-PAWPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp HHHHHHHH-HC-TTCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHH-hC-CCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 88888876 22 224556777777777888888877655443
No 73
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.09 E-value=5.2e-09 Score=106.96 Aligned_cols=230 Identities=8% Similarity=-0.027 Sum_probs=168.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCC-CCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CC-----CHHHHH
Q 042546 414 VLKALISVGRMGECNKILKAMEEGG-FIA----SSNMKSKIAFRLSSAGKKDEANEFMDHMEASGS-DV-----GDKMWV 482 (671)
Q Consensus 414 li~~~~~~g~~~~A~~~~~~m~~~g-~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~~-----~~~~~~ 482 (671)
....+...|++++|...|++..+.- -.+ ...+|..+...|...|++++|...+++..+.-. .+ ...+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 4556788999999999999987631 012 246788899999999999999999998764211 11 235788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHh---CCC-CCCHHHHH
Q 042546 483 SLIKGHCVAGDLDKAADCFQKMVEKEGTSHA----GYAIDLLVNTYCSKNRAIDACKFVHNCVRE---YDL-KPWHTTYE 554 (671)
Q Consensus 483 ~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~-~p~~~~~~ 554 (671)
.+...|...|++++|.+.+++..+...-.++ ..++..+...|...|++++|.+.|++.... .+. .....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 8889999999999999999988751111122 246788889999999999999999987651 122 22356788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCC---CCCH----HHHHHHHHhcCC---hHHHHHHHHHhhhCCCCCHHHHHHHHH
Q 042546 555 ELIKNLLVQRGFKDALSLLCLMKDHGF---PPFV----DPFIKYVSKSGT---SDDAIAFLKGMTSKRFPSMSVVLCLFA 624 (671)
Q Consensus 555 ~li~~~~~~g~~~~A~~l~~~m~~~~~---~p~~----~t~~~~l~~~g~---~~~A~~~~~~m~~~~~p~~~~~~~l~~ 624 (671)
.+...|.+.|++++|.+.+++..+... .|.. ..+...+...|+ +++|..++++... .+.....+..+..
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~-~~~~~~~~~~la~ 347 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKML-YADLEDFAIDVAK 347 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcC-HHHHHHHHHHHHH
Confidence 888999999999999999998764311 1111 112344457788 7888888877621 1123457788999
Q ss_pred HHHHcCCHHHHHHHHHhchH
Q 042546 625 AFFQARRHSEAQDLLSKCPR 644 (671)
Q Consensus 625 ~~~~~g~~~~A~~~~~~m~~ 644 (671)
.|.+.|++++|.+.+++...
T Consensus 348 ~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 348 YYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHH
Confidence 99999999999999988553
No 74
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.07 E-value=2e-08 Score=90.25 Aligned_cols=163 Identities=11% Similarity=-0.005 Sum_probs=135.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 042546 410 MLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHC 489 (671)
Q Consensus 410 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~ 489 (671)
.+..+...+...|++++|...|+++.+.. +.+..++..+...+...|++++|.+.++++.+.. +.+...+..+...+.
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 46677788889999999999999887654 4567888889999999999999999999988764 346778888889999
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 042546 490 VAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDA 569 (671)
Q Consensus 490 ~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A 569 (671)
..|++++|.+.++++.+ . .+.+...+..+...|...|++++|.+.+++.... ...+...+..+...+...|++++|
T Consensus 88 ~~~~~~~A~~~~~~~~~-~-~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A 163 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAE-A-NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGL--RPNEGKVHRAIAFSYEQMGRHEEA 163 (186)
T ss_dssp HHTCHHHHHHHHHHHHH-H-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HhcCHHHHHHHHHHHHh-c-CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhc--CccchHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999887 3 2346677888888899999999999999998764 234567888888889999999999
Q ss_pred HHHHHHHHh
Q 042546 570 LSLLCLMKD 578 (671)
Q Consensus 570 ~~l~~~m~~ 578 (671)
.+.+++..+
T Consensus 164 ~~~~~~~~~ 172 (186)
T 3as5_A 164 LPHFKKANE 172 (186)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999988765
No 75
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.03 E-value=3.6e-09 Score=102.58 Aligned_cols=223 Identities=14% Similarity=0.072 Sum_probs=140.6
Q ss_pred hcCCHHHHHHHHHHHHH-------CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC------CCCC-CHHHHHHHH
Q 042546 420 SVGRMGECNKILKAMEE-------GGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEAS------GSDV-GDKMWVSLI 485 (671)
Q Consensus 420 ~~g~~~~A~~~~~~m~~-------~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~~-~~~~~~~li 485 (671)
..|++++|...|++..+ ...+....++..+...|...|++++|...+++..+. +-.| ...++..+.
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 92 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA 92 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 34555555555554433 222234567778888888888888888888887643 2122 345677888
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcC------CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-----CCCC-CHHH
Q 042546 486 KGHCVAGDLDKAADCFQKMVEKE------GT-SHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREY-----DLKP-WHTT 552 (671)
Q Consensus 486 ~~~~~~g~~~~a~~~~~~m~~~~------g~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-----~~~p-~~~~ 552 (671)
..|...|++++|.+.+++..+ . .- .....++..+...|...|++++|...|++..... ...| ...+
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~-~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 93 VLYGKRGKYKEAEPLCKRALE-IREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHTTTCHHHHHHHHHHHHH-HHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHH-HHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 888888888888888888766 2 11 2235667778888888999999999888876530 1122 2457
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhC-------CCCCCHHHH---HHHHH-h------cCChHHHHHHHHHhhhCCCCC
Q 042546 553 YEELIKNLLVQRGFKDALSLLCLMKDH-------GFPPFVDPF---IKYVS-K------SGTSDDAIAFLKGMTSKRFPS 615 (671)
Q Consensus 553 ~~~li~~~~~~g~~~~A~~l~~~m~~~-------~~~p~~~t~---~~~l~-~------~g~~~~A~~~~~~m~~~~~p~ 615 (671)
+..+...|...|++++|.+.+++..+. ...+....+ ...+. . ...+.++...++......+..
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTV 251 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHH
Confidence 778888888999999999999887642 112222111 11121 1 222334444444333322334
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhch
Q 042546 616 MSVVLCLFAAFFQARRHSEAQDLLSKCP 643 (671)
Q Consensus 616 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 643 (671)
...+..+..+|.+.|++++|.+++++..
T Consensus 252 ~~~~~~la~~~~~~g~~~~A~~~~~~al 279 (283)
T 3edt_B 252 NTTLRSLGALYRRQGKLEAAHTLEDCAS 279 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5678899999999999999999998754
No 76
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.02 E-value=2.7e-08 Score=101.56 Aligned_cols=295 Identities=9% Similarity=-0.011 Sum_probs=178.8
Q ss_pred CCChHHHHHHHHHHHHcC-CC--CCCHHHHHHHHHHHH--ccCChHHHH-----------HHHHHHHHcCCCCCHHH---
Q 042546 278 GDEPKKALIFFRWAEESG-FV--KHDESSYNAMASVLG--REDCIDRFW-----------KVLDEMRSKGYEMEMET--- 338 (671)
Q Consensus 278 ~~~~~~A~~~f~~~~~~~-~~--~~~~~~~~~li~~~~--~~g~~~~A~-----------~~~~~m~~~g~~p~~~t--- 338 (671)
.+++++|..+.+.+.... .. .++...|-.++..-. -.++++.+. +.++.+.... ++...
T Consensus 25 ~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~--~~~~~~l~ 102 (383)
T 3ulq_A 25 RFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQ--ARLTGLLE 102 (383)
T ss_dssp TTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHT--HHHHHHHH
T ss_pred HcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcC--CCchhHHH
Confidence 489999999999986532 22 233344444433211 122333333 6666655431 11111
Q ss_pred ---HHHHHHHHHhCCChHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 042546 339 ---CVKVLGRFSERNMVKEAVDLYEFAMACKN-KPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSV 414 (671)
Q Consensus 339 ---~~~li~~~~~~g~~~~a~~l~~~m~~~g~-~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 414 (671)
+......+...|++++|...|++..+.-- .++... ...++..+
T Consensus 103 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~---------------------------------~a~~~~~l 149 (383)
T 3ulq_A 103 YYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIE---------------------------------KAEFFFKM 149 (383)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHH---------------------------------HHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHH---------------------------------HHHHHHHH
Confidence 12245567789999999999999875310 122110 11346667
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHC--CC----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HHHHHH
Q 042546 415 LKALISVGRMGECNKILKAMEEG--GF----IASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGS-DVG----DKMWVS 483 (671)
Q Consensus 415 i~~~~~~g~~~~A~~~~~~m~~~--g~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~~~----~~~~~~ 483 (671)
...|...|++++|...+++..+. .. .....+++.+...|...|++++|.+.|++..+... .++ ..++..
T Consensus 150 g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 229 (383)
T 3ulq_A 150 SESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYN 229 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 77778888888888888776542 11 11245677777888888888888888877653210 112 236777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHc---CCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC---CCCCCHHHHHHH
Q 042546 484 LIKGHCVAGDLDKAADCFQKMVEK---EGT-SHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREY---DLKPWHTTYEEL 556 (671)
Q Consensus 484 li~~~~~~g~~~~a~~~~~~m~~~---~g~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~---~~~p~~~~~~~l 556 (671)
+...|...|++++|.+.+++..+. .+. .....++..+...|.+.|++++|...+++..... +-......+..+
T Consensus 230 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l 309 (383)
T 3ulq_A 230 IGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFL 309 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 788888888888888888776651 133 2335567777788888888888888887765421 111112234556
Q ss_pred HHHHHhcCC---HHHHHHHHHHHHhCCCCCCHHH----HHHHHHhcCChHHHHHHHHHhhh
Q 042546 557 IKNLLVQRG---FKDALSLLCLMKDHGFPPFVDP----FIKYVSKSGTSDDAIAFLKGMTS 610 (671)
Q Consensus 557 i~~~~~~g~---~~~A~~l~~~m~~~~~~p~~~t----~~~~l~~~g~~~~A~~~~~~m~~ 610 (671)
-..|...|+ +++|+.++++. +..|+... +...|...|++++|..++++...
T Consensus 310 ~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 310 KSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 666777777 66777766665 33333322 24556678888888888877654
No 77
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=98.99 E-value=3.6e-07 Score=92.76 Aligned_cols=95 Identities=17% Similarity=0.035 Sum_probs=42.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC----CHH
Q 042546 411 LNSVLKALISVGRMGECNKILKAMEEG----GFI--A-SSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDV----GDK 479 (671)
Q Consensus 411 ~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~----~~~ 479 (671)
++.+...+...|++++|...+++..+. +.. | ....+..+...+...|++++|...+++........ ...
T Consensus 96 ~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 175 (373)
T 1hz4_A 96 LIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQ 175 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHH
Confidence 344445555555555555555554421 111 1 12233444445555555555555555544321110 123
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 042546 480 MWVSLIKGHCVAGDLDKAADCFQKMV 505 (671)
Q Consensus 480 ~~~~li~~~~~~g~~~~a~~~~~~m~ 505 (671)
++..+...+...|++++|...+++..
T Consensus 176 ~~~~la~~~~~~g~~~~A~~~l~~a~ 201 (373)
T 1hz4_A 176 CLAMLIQCSLARGDLDNARSQLNRLE 201 (373)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34444444455555555555555443
No 78
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=98.98 E-value=7.2e-08 Score=86.52 Aligned_cols=166 Identities=12% Similarity=0.066 Sum_probs=138.0
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 042546 336 METCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVL 415 (671)
Q Consensus 336 ~~t~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li 415 (671)
...|..+...+...|++++|.+.++++.+. . +.+..++..+.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~------------------------------------~~~~~~~~~~~ 49 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDA--D------------------------------------AFDVDVALHLG 49 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCT--T------------------------------------SCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--C------------------------------------ccChHHHHHHH
Confidence 446677788888999999999999887642 1 12334577788
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 042546 416 KALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLD 495 (671)
Q Consensus 416 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~ 495 (671)
..+...|++++|...+++..+.. +.+...+..+...|...|++++|.+.++++.+.. +.+...+..+...+...|+++
T Consensus 50 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~ 127 (186)
T 3as5_A 50 IAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFD 127 (186)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHH
Confidence 88899999999999999988764 4577889999999999999999999999998764 457788899999999999999
Q ss_pred HHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 042546 496 KAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVRE 543 (671)
Q Consensus 496 ~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 543 (671)
+|.+.+++..+ .. +.+...+..+...|...|++++|.+.++...+.
T Consensus 128 ~A~~~~~~~~~-~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 173 (186)
T 3as5_A 128 EAIDSFKIALG-LR-PNEGKVHRAIAFSYEQMGRHEEALPHFKKANEL 173 (186)
T ss_dssp HHHHHHHHHHH-HC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh-cC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 99999999987 32 345778889999999999999999999988653
No 79
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=98.98 E-value=4.7e-08 Score=99.55 Aligned_cols=230 Identities=10% Similarity=-0.033 Sum_probs=167.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CC-----CHHHHH
Q 042546 414 VLKALISVGRMGECNKILKAMEEGGF-IAS----SNMKSKIAFRLSSAGKKDEANEFMDHMEASGS-DV-----GDKMWV 482 (671)
Q Consensus 414 li~~~~~~g~~~~A~~~~~~m~~~g~-~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~~-----~~~~~~ 482 (671)
....+...|++++|...|++..+.-. .++ ..++..+...|...|++++|...+++..+... .+ ...+++
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 186 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLF 186 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHH
Confidence 44556789999999999999875311 123 45788889999999999999999998764211 11 245688
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHc---CCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh---CCCCCCHHHHHH
Q 042546 483 SLIKGHCVAGDLDKAADCFQKMVEK---EGTSH-AGYAIDLLVNTYCSKNRAIDACKFVHNCVRE---YDLKPWHTTYEE 555 (671)
Q Consensus 483 ~li~~~~~~g~~~~a~~~~~~m~~~---~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~~p~~~~~~~ 555 (671)
.+...|...|++++|.+.|++..+. .+-.+ ...++..+-.+|...|++++|.+.|++.... .+......++..
T Consensus 187 ~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 266 (378)
T 3q15_A 187 VIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFG 266 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHH
Confidence 8999999999999999999887651 11111 2346777888999999999999999988751 012223567888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCC---CCHHHH----HHHHHhcCC---hHHHHHHHHHhhhCCCCCHHHHHHHHHH
Q 042546 556 LIKNLLVQRGFKDALSLLCLMKDHGFP---PFVDPF----IKYVSKSGT---SDDAIAFLKGMTSKRFPSMSVVLCLFAA 625 (671)
Q Consensus 556 li~~~~~~g~~~~A~~l~~~m~~~~~~---p~~~t~----~~~l~~~g~---~~~A~~~~~~m~~~~~p~~~~~~~l~~~ 625 (671)
+...|.+.|++++|.+.+++..+.... |..... ...+...|+ +++|..+++.... .+.....+..+...
T Consensus 267 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~-~~~~~~~~~~la~~ 345 (378)
T 3q15_A 267 LSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNL-HAYIEACARSAAAV 345 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCC-hhHHHHHHHHHHHH
Confidence 889999999999999999988753221 222222 233346677 7788888876321 11234567789999
Q ss_pred HHHcCCHHHHHHHHHhchH
Q 042546 626 FFQARRHSEAQDLLSKCPR 644 (671)
Q Consensus 626 ~~~~g~~~~A~~~~~~m~~ 644 (671)
|.+.|++++|.+.+++...
T Consensus 346 y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 346 FESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHH
Confidence 9999999999999998653
No 80
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=98.94 E-value=7.9e-08 Score=89.99 Aligned_cols=212 Identities=9% Similarity=-0.060 Sum_probs=158.8
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHH
Q 042546 440 IASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDL 519 (671)
Q Consensus 440 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~ 519 (671)
..|...+......+.+.|++++|.+.|++..+....++...+..+...+...|++++|.+.+++..+ .. +-+...+..
T Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~-~~-p~~~~~~~~ 81 (228)
T 4i17_A 4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIK-KN-YNLANAYIG 81 (228)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-TT-CSHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHH-hC-cchHHHHHH
Confidence 3567888889999999999999999999998876447888888899999999999999999999987 22 225667888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHH
Q 042546 520 LVNTYCSKNRAIDACKFVHNCVREYDLKPWH-------TTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPF--VDPFIK 590 (671)
Q Consensus 520 li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~-------~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~--~~t~~~ 590 (671)
+...|...|++++|...|++..... +.+. ..|..+-..+...|++++|++.|++..+. .|+ ......
T Consensus 82 l~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~ 157 (228)
T 4i17_A 82 KSAAYRDMKNNQEYIATLTEGIKAV--PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALY 157 (228)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHH
Confidence 9999999999999999999998742 2233 45777777888899999999999999863 666 322211
Q ss_pred HHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhchHhhhccHHHHHHHHhhh
Q 042546 591 YVSKSGTSDDAIAFLKGMTSKRFPSMSVVLCLFAAFFQARRHSEAQDLLSKCPRYVRNHADVLNLLYSKK 660 (671)
Q Consensus 591 ~l~~~g~~~~A~~~~~~m~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~l~~~m~ 660 (671)
.++.. ....+..+++.+......+...|.... ....|.+++|...+++..+..+..+++..++....
T Consensus 158 ~l~~~-~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~ 224 (228)
T 4i17_A 158 SLGVL-FYNNGADVLRKATPLASSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVK 224 (228)
T ss_dssp HHHHH-HHHHHHHHHHHHGGGTTTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHH-HHHHHHHHHHHHHhcccCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence 11110 133455566766665555666665544 34567789999999998877777777777776654
No 81
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=98.93 E-value=3.9e-07 Score=85.23 Aligned_cols=208 Identities=5% Similarity=-0.094 Sum_probs=154.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 042546 407 TDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIK 486 (671)
Q Consensus 407 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~ 486 (671)
|+..+......+.+.|++++|...|++..+..-+++...+..+...|.+.|++++|.+.|++..+.. +.+...|..+..
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 84 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKSA 84 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHHH
Confidence 4566778888899999999999999999887633788888889999999999999999999998764 235567889999
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCCH-----HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCC---HHHHHHHHH
Q 042546 487 GHCVAGDLDKAADCFQKMVEKEGTSHAG-----YAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPW---HTTYEELIK 558 (671)
Q Consensus 487 ~~~~~g~~~~a~~~~~~m~~~~g~~p~~-----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~---~~~~~~li~ 558 (671)
.|...|++++|.+.+++..+...-.+.. ..|..+-..+...|++++|.+.|++..+ ..|+ ...|..+..
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~~~l~~ 161 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD---VTSKKWKTDALYSLGV 161 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT---SSCHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh---cCCCcccHHHHHHHHH
Confidence 9999999999999999998722211211 4577777888999999999999999975 4565 456666666
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH-HHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHH
Q 042546 559 NLLVQRGFKDALSLLCLMKDHGFPPFVDPFIK-YVSKSGTSDDAIAFLKGMTSKRFPSMSVVLCLFA 624 (671)
Q Consensus 559 ~~~~~g~~~~A~~l~~~m~~~~~~p~~~t~~~-~l~~~g~~~~A~~~~~~m~~~~~p~~~~~~~l~~ 624 (671)
.|...| ..+++++...+ ..+...+.. .....+.+++|...+++..+..|.+......+..
T Consensus 162 ~~~~~~-----~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~ 222 (228)
T 4i17_A 162 LFYNNG-----ADVLRKATPLA-SSNKEKYASEKAKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQ 222 (228)
T ss_dssp HHHHHH-----HHHHHHHGGGT-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHH-----HHHHHHHHhcc-cCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHH
Confidence 665444 34455555432 222233322 2235677899999999998877666666554433
No 82
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=98.91 E-value=1.3e-06 Score=88.85 Aligned_cols=227 Identities=11% Similarity=0.038 Sum_probs=154.5
Q ss_pred CCChHHHHHHHHHHHHcCCCCCC----HHHHHHHHHHHHccCChHHHHHHHHHHHHcC--C---CC-CHHHHHHHHHHHH
Q 042546 278 GDEPKKALIFFRWAEESGFVKHD----ESSYNAMASVLGREDCIDRFWKVLDEMRSKG--Y---EM-EMETCVKVLGRFS 347 (671)
Q Consensus 278 ~~~~~~A~~~f~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~---~p-~~~t~~~li~~~~ 347 (671)
.|++++|...|++......-.+| ..++..+...|...|++++|...+++..+.. . .+ ...+++.+...|.
T Consensus 114 ~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~ 193 (378)
T 3q15_A 114 QKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYD 193 (378)
T ss_dssp TTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHH
T ss_pred HCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHH
Confidence 48999999999988642111233 4578888889999999999999998876531 1 11 2557788888999
Q ss_pred hCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHH
Q 042546 348 ERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVL-TDAMLNSVLKALISVGRMGE 426 (671)
Q Consensus 348 ~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~ 426 (671)
..|++++|.+.|.+..+. .-+ .+..+ ...+++.+...|...|++++
T Consensus 194 ~~~~~~~A~~~~~~al~~---------------~~~------------------~~~~~~~~~~~~~lg~~y~~~~~~~~ 240 (378)
T 3q15_A 194 DFKHYDKALPHLEAALEL---------------AMD------------------IQNDRFIAISLLNIANSYDRSGDDQM 240 (378)
T ss_dssp HTTCHHHHHHHHHHHHHH---------------HHH------------------TTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HhCCHHHHHHHHHHHHHH---------------HHH------------------cCCHHHHHHHHHHHHHHHHHCCCHHH
Confidence 999999999999887631 000 01000 11357778888999999999
Q ss_pred HHHHHHHHHH-----CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC----CCCHHHHHHHHHHHHhcCC---H
Q 042546 427 CNKILKAMEE-----GGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGS----DVGDKMWVSLIKGHCVAGD---L 494 (671)
Q Consensus 427 A~~~~~~m~~-----~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~----~~~~~~~~~li~~~~~~g~---~ 494 (671)
|.+.|++..+ .. +....++..+...|.+.|++++|...+++..+... ......+..+-..|...++ +
T Consensus 241 A~~~~~~al~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~ 319 (378)
T 3q15_A 241 AVEHFQKAAKVSREKVP-DLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKI 319 (378)
T ss_dssp HHHHHHHHHHHHHHHCG-GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHH
T ss_pred HHHHHHHHHHHHHhhCC-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHH
Confidence 9999988876 32 33366778888888899999999999888765321 1123345555556666677 6
Q ss_pred HHHHHHHHHHHHcCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 042546 495 DKAADCFQKMVEKEGTSH-AGYAIDLLVNTYCSKNRAIDACKFVHNCVR 542 (671)
Q Consensus 495 ~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 542 (671)
++|...+++. +..| ....+..+...|...|+.++|...|+....
T Consensus 320 ~~al~~~~~~----~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 320 HDLLSYFEKK----NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHHHT----TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhC----CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 6666666542 2222 233455666777777888887777776643
No 83
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=98.90 E-value=1.5e-06 Score=88.08 Aligned_cols=267 Identities=11% Similarity=-0.011 Sum_probs=182.3
Q ss_pred hCCChHHHHHHHHHHHHcCCCCCCH----HHHHHHHHHHHccCChHHHHHHHHHHHHcCC-CCCH----HHHHHHHHHHH
Q 042546 277 LGDEPKKALIFFRWAEESGFVKHDE----SSYNAMASVLGREDCIDRFWKVLDEMRSKGY-EMEM----ETCVKVLGRFS 347 (671)
Q Consensus 277 ~~~~~~~A~~~f~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~----~t~~~li~~~~ 347 (671)
..|++++|...+++...... ..+. .+++.+...+...|++++|.+.+++.....- .++. .++..+...+.
T Consensus 26 ~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~ 104 (373)
T 1hz4_A 26 NDGNPDEAERLAKLALEELP-PGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILF 104 (373)
T ss_dssp HTTCHHHHHHHHHHHHHTCC-TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHcCC-CCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH
Confidence 35999999999998776331 2222 2566677788889999999999988765311 1122 33566777788
Q ss_pred hCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCC--C-CHHHHHHHHHHHHhcCCH
Q 042546 348 ERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNV--L-TDAMLNSVLKALISVGRM 424 (671)
Q Consensus 348 ~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~li~~~~~~g~~ 424 (671)
..|++++|.+.+++..+. ....+.. | ....+..+...+...|++
T Consensus 105 ~~G~~~~A~~~~~~al~~---------------------------------~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 151 (373)
T 1hz4_A 105 AQGFLQTAWETQEKAFQL---------------------------------INEQHLEQLPMHEFLVRIRAQLLWAWARL 151 (373)
T ss_dssp HTTCHHHHHHHHHHHHHH---------------------------------HHHTTCTTSTHHHHHHHHHHHHHHHTTCH
T ss_pred HCCCHHHHHHHHHHHHHH---------------------------------HHHhccccCcHHHHHHHHHHHHHHHhcCH
Confidence 899999999999887631 0011111 1 123466677888999999
Q ss_pred HHHHHHHHHHHHCCCC----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHH-----HHHHHHHhcCCH
Q 042546 425 GECNKILKAMEEGGFI----ASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVG-DKMWV-----SLIKGHCVAGDL 494 (671)
Q Consensus 425 ~~A~~~~~~m~~~g~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~-~~~~~-----~li~~~~~~g~~ 494 (671)
++|...+++..+..-. ....++..+...+...|++++|...+++.......++ ...+. ..+..+...|+.
T Consensus 152 ~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 231 (373)
T 1hz4_A 152 DEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDK 231 (373)
T ss_dssp HHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCH
Confidence 9999999988753211 1245778888899999999999999998865321211 11222 233447799999
Q ss_pred HHHHHHHHHHHHcCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh---CCCCCCH-HHHHHHHHHHHhcCCHH
Q 042546 495 DKAADCFQKMVEKEGTSH---AGYAIDLLVNTYCSKNRAIDACKFVHNCVRE---YDLKPWH-TTYEELIKNLLVQRGFK 567 (671)
Q Consensus 495 ~~a~~~~~~m~~~~g~~p---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~~p~~-~~~~~li~~~~~~g~~~ 567 (671)
++|...+++... ....+ ....+..+...+...|+.++|...++..... .+..++. ..+..+..++...|+.+
T Consensus 232 ~~A~~~~~~a~~-~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 310 (373)
T 1hz4_A 232 AAAANWLRHTAK-PEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKS 310 (373)
T ss_dssp HHHHHHHHHSCC-CCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHhCCC-CCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHH
Confidence 999999998865 33221 1335667778899999999999999887542 1211122 25556667788899999
Q ss_pred HHHHHHHHHHh
Q 042546 568 DALSLLCLMKD 578 (671)
Q Consensus 568 ~A~~l~~~m~~ 578 (671)
+|.+.+++...
T Consensus 311 ~A~~~l~~al~ 321 (373)
T 1hz4_A 311 DAQRVLLDALK 321 (373)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99988887753
No 84
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.87 E-value=3.6e-07 Score=87.60 Aligned_cols=175 Identities=10% Similarity=0.061 Sum_probs=89.3
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 042546 462 ANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGT-SHAGYAIDLLVNTYCSKNRAIDACKFVHNC 540 (671)
Q Consensus 462 A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 540 (671)
|...|++..+.+ .++..++..+..++...|++++|++++.+... .+- .-+...+..++..|.+.|+.+.|.+.++.|
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~-~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~ 162 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGID-NDEAEGTTELLLLAIEVALLNNNVSTASTIFDNY 162 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHT-SSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhc-cCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 455555554433 34444444555556666666666666665543 222 124445555566666666666666666666
Q ss_pred HHhCCCCC-----CHHHHHHHHHHHH--hcC--CHHHHHHHHHHHHhCCCCCC---HHHHHHHHHhcCChHHHHHHHHHh
Q 042546 541 VREYDLKP-----WHTTYEELIKNLL--VQR--GFKDALSLLCLMKDHGFPPF---VDPFIKYVSKSGTSDDAIAFLKGM 608 (671)
Q Consensus 541 ~~~~~~~p-----~~~~~~~li~~~~--~~g--~~~~A~~l~~~m~~~~~~p~---~~t~~~~l~~~g~~~~A~~~~~~m 608 (671)
.+ ..| +..+...|..++. ..| +..+|..+|+++.+. .|+ ...+..++.+.|++++|++.++.+
T Consensus 163 ~~---~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l 237 (310)
T 3mv2_B 163 TN---AIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELL 237 (310)
T ss_dssp HH---HSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred Hh---cCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 43 234 2334444444422 222 566666666665543 343 223344445666666666666654
Q ss_pred hhC----------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHhchHh
Q 042546 609 TSK----------RFPSMSVVLCLFAAFFQARRHSEAQDLLSKCPRY 645 (671)
Q Consensus 609 ~~~----------~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 645 (671)
.+. .+.+..+...+|......|+ +|.++++++...
T Consensus 238 ~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~ 282 (310)
T 3mv2_B 238 LSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL 282 (310)
T ss_dssp HSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred HHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence 432 13345555445544445554 566666665543
No 85
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.87 E-value=3.7e-08 Score=95.38 Aligned_cols=212 Identities=16% Similarity=0.068 Sum_probs=139.3
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 042546 335 EMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSV 414 (671)
Q Consensus 335 ~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 414 (671)
...++..+...|...|++++|...+.+..+. .........+....++..+
T Consensus 42 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~------------------------------~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 42 VATMLNILALVYRDQNKYKEAAHLLNDALAI------------------------------REKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------------------------------HHHHTCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHHHH------------------------------HHHHcCCcchHHHHHHHHH
Confidence 4667888888888999999999999887631 0000000011122457888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHC------C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC------CCCC-CHHH
Q 042546 415 LKALISVGRMGECNKILKAMEEG------G-FIASSNMKSKIAFRLSSAGKKDEANEFMDHMEAS------GSDV-GDKM 480 (671)
Q Consensus 415 i~~~~~~g~~~~A~~~~~~m~~~------g-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~~-~~~~ 480 (671)
...|...|++++|...|++..+. . .+....++..+...|...|++++|.+.+++..+. +-.| ...+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 89999999999999999988754 1 1234567888999999999999999999998764 1122 3467
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcC------CCCCCHH-HHHHHHHHHHhcCCH------HHHHHHHHHHHHhCCCC
Q 042546 481 WVSLIKGHCVAGDLDKAADCFQKMVEKE------GTSHAGY-AIDLLVNTYCSKNRA------IDACKFVHNCVREYDLK 547 (671)
Q Consensus 481 ~~~li~~~~~~g~~~~a~~~~~~m~~~~------g~~p~~~-~~~~li~~~~~~g~~------~~A~~~~~~m~~~~~~~ 547 (671)
+..+...|...|++++|.+.+++..+.. ...+... .+..+...+...+.. ..+...+..... ...
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 249 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV--DSP 249 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC--CCH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC--CCH
Confidence 8889999999999999999999887610 1122222 233333333333322 222222222211 111
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 042546 548 PWHTTYEELIKNLLVQRGFKDALSLLCLMKD 578 (671)
Q Consensus 548 p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 578 (671)
....++..+...|.+.|++++|.+++++..+
T Consensus 250 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 250 TVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2345778888999999999999999998765
No 86
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=98.83 E-value=2.1e-07 Score=101.93 Aligned_cols=163 Identities=15% Similarity=0.108 Sum_probs=142.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 042546 408 DAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKG 487 (671)
Q Consensus 408 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~ 487 (671)
...|+.+-..|.+.|++++|.+.|++..+.. +-+..+|+.+...|.+.|++++|++.|++..+.. .-+...|..+...
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~~ 86 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGNT 86 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 4578999999999999999999999998765 4567899999999999999999999999998764 3357889999999
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCC
Q 042546 488 HCVAGDLDKAADCFQKMVEKEGTSH-AGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKP-WHTTYEELIKNLLVQRG 565 (671)
Q Consensus 488 ~~~~g~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~ 565 (671)
|.+.|++++|.+.|++..+ . .| +...|+.+..+|.+.|++++|.+.|++..+. .| +...|..+...|...|+
T Consensus 87 l~~~g~~~~A~~~~~kAl~-l--~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l---~P~~~~a~~~L~~~l~~~g~ 160 (723)
T 4gyw_A 87 LKEMQDVQGALQCYTRAIQ-I--NPAFADAHSNLASIHKDSGNIPEAIASYRTALKL---KPDFPDAYCNLAHCLQIVCD 160 (723)
T ss_dssp HHHTTCHHHHHHHHHHHHH-H--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CSCCHHHHHHHHHHHHHTTC
T ss_pred HHHcCCHHHHHHHHHHHHH-h--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCChHHHhhhhhHHHhccc
Confidence 9999999999999999987 2 33 5678999999999999999999999999864 34 46788999999999999
Q ss_pred HHHHHHHHHHHHh
Q 042546 566 FKDALSLLCLMKD 578 (671)
Q Consensus 566 ~~~A~~l~~~m~~ 578 (671)
+++|.+.+++..+
T Consensus 161 ~~~A~~~~~kal~ 173 (723)
T 4gyw_A 161 WTDYDERMKKLVS 173 (723)
T ss_dssp CTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999998887653
No 87
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=98.81 E-value=2.4e-07 Score=101.45 Aligned_cols=167 Identities=12% Similarity=0.064 Sum_probs=138.6
Q ss_pred CCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHH
Q 042546 298 KHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEM-EMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTF 376 (671)
Q Consensus 298 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ 376 (671)
+-+..+|+.|-..|.+.|++++|++.|++..+. .| +..+|+.+-.+|.+.|++++|++.|++..+. .|+
T Consensus 6 P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l--~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l--~P~------ 75 (723)
T 4gyw_A 6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPT------ 75 (723)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTT------
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCC------
Confidence 334678999999999999999999999998876 34 4788999999999999999999999988752 222
Q ss_pred HHHHHHhcCcccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 042546 377 LLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSA 456 (671)
Q Consensus 377 ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 456 (671)
+...|+.+..+|.+.|++++|.+.|++..+.. +-+...|+.+...|.+.
T Consensus 76 ------------------------------~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~ 124 (723)
T 4gyw_A 76 ------------------------------FADAYSNMGNTLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDS 124 (723)
T ss_dssp ------------------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred ------------------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc
Confidence 23457888888999999999999999988765 45678899999999999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 042546 457 GKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVE 506 (671)
Q Consensus 457 g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 506 (671)
|++++|++.|++..+.. .-+...|..+...+...|++++|.+.+++..+
T Consensus 125 g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~g~~~~A~~~~~kal~ 173 (723)
T 4gyw_A 125 GNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIVCDWTDYDERMKKLVS 173 (723)
T ss_dssp TCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCCTTHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHhcccHHHHHHHHHHHHH
Confidence 99999999999988763 23567888899999999999999888887654
No 88
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.81 E-value=3.4e-07 Score=76.98 Aligned_cols=128 Identities=19% Similarity=0.189 Sum_probs=71.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 042546 411 LNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCV 490 (671)
Q Consensus 411 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~ 490 (671)
|..+...+...|++++|..+|+++.+.. +.+...+..+...+...|++++|.+.++++.+.+ +.+...+..+...+..
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHH
Confidence 4455556666666666666666665543 3345555566666666666666666666665443 2344455555555566
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 042546 491 AGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVR 542 (671)
Q Consensus 491 ~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 542 (671)
.|++++|.+.++++.+ .. +.+..++..+...|.+.|++++|.+.|.++..
T Consensus 82 ~~~~~~A~~~~~~~~~-~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALE-LD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp TTCHHHHHHHHHHHHH-HC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHH-hC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 6666666666655554 21 12344455555555555555555555555543
No 89
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.77 E-value=2.5e-06 Score=81.82 Aligned_cols=173 Identities=11% Similarity=-0.020 Sum_probs=89.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-----CHHH
Q 042546 407 TDAMLNSVLKALISVGRMGECNKILKAMEEGGF-IASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDV-----GDKM 480 (671)
Q Consensus 407 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~-----~~~~ 480 (671)
+..++..+..++...|++++|++++.+....+- .-+...+..++..+.+.|+.+.|.+.+++|.+. .| +..+
T Consensus 99 ~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~--~~d~~~~~d~~ 176 (310)
T 3mv2_B 99 SPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA--IEDTVSGDNEM 176 (310)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CccccccchHH
Confidence 334444555666666666666666666554431 124455566666666666666666666666554 34 2344
Q ss_pred HHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC----C----CCC
Q 042546 481 WVSLIKGHCV----AGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREY----D----LKP 548 (671)
Q Consensus 481 ~~~li~~~~~----~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~----~----~~p 548 (671)
...+..++.. .++..+|..+|+++.+ -.|+..+...++.++.+.|++++|.+.++.+.+.. . -.-
T Consensus 177 l~~Laea~v~l~~g~~~~q~A~~~f~El~~---~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~ 253 (310)
T 3mv2_B 177 ILNLAESYIKFATNKETATSNFYYYEELSQ---TFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLY 253 (310)
T ss_dssp HHHHHHHHHHHHHTCSTTTHHHHHHHHHHT---TSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSS
T ss_pred HHHHHHHHHHHHhCCccHHHHHHHHHHHHH---hCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccccccCCCC
Confidence 4444444222 2266666666666644 12332333344445666666666666666544321 0 012
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 042546 549 WHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPF 588 (671)
Q Consensus 549 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~t~ 588 (671)
|..+...+|......|+ +|.++++++.+. .|+....
T Consensus 254 ~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~--~P~hp~i 289 (310)
T 3mv2_B 254 KPTFLANQITLALMQGL--DTEDLTNQLVKL--DHEHAFI 289 (310)
T ss_dssp HHHHHHHHHHHHHHTTC--TTHHHHHHHHHT--TCCCHHH
T ss_pred CHHHHHHHHHHHHHhCh--HHHHHHHHHHHh--CCCChHH
Confidence 33344334434444454 566666666653 4554433
No 90
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.77 E-value=5.9e-07 Score=75.46 Aligned_cols=130 Identities=17% Similarity=0.172 Sum_probs=107.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Q 042546 445 MKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTY 524 (671)
Q Consensus 445 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~ 524 (671)
.|..+...+...|++++|.++++++.+.. +.+...+..+...+...|++++|.+.++++.+ .. +.+...+..+...|
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~-~~-~~~~~~~~~l~~~~ 79 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE-LD-PRSAEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-HC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHH-HC-CCchHHHHHHHHHH
Confidence 56778888999999999999999988764 34677888888899999999999999999887 33 34566788888899
Q ss_pred HhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 042546 525 CSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDH 579 (671)
Q Consensus 525 ~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 579 (671)
...|++++|.+.++++... ...+...+..+...+.+.|++++|.+.++++.+.
T Consensus 80 ~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp HTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 9999999999999998764 2345678888888999999999999999988753
No 91
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.70 E-value=2e-06 Score=83.81 Aligned_cols=164 Identities=11% Similarity=0.015 Sum_probs=77.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCCC-CHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHhCCCCCC----H
Q 042546 480 MWVSLIKGHCVAGDLDKAADCFQKMVEK---EGTSH-AGYAIDLLVNTYCSK-NRAIDACKFVHNCVREYDLKPW----H 550 (671)
Q Consensus 480 ~~~~li~~~~~~g~~~~a~~~~~~m~~~---~g~~p-~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~~~~~p~----~ 550 (671)
+|+.+...|.+.|++++|...+++..+. .|-.+ -..+++.+...|... |++++|...|++......-..+ .
T Consensus 79 ~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~ 158 (292)
T 1qqe_A 79 TYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSN 158 (292)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHH
Confidence 3444444444444444444444443320 00000 023445555555554 6666666666655432100001 2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH------HH---HHHHHhcCChHHHHHHHHHhhhCCC--CCH---
Q 042546 551 TTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVD------PF---IKYVSKSGTSDDAIAFLKGMTSKRF--PSM--- 616 (671)
Q Consensus 551 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~------t~---~~~l~~~g~~~~A~~~~~~m~~~~~--p~~--- 616 (671)
.+|..+...|.+.|++++|++.|++..+........ .+ ..++...|++++|...+++.....+ ++.
T Consensus 159 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~ 238 (292)
T 1qqe_A 159 KCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRES 238 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------H
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHH
Confidence 345555666666666666666666666533221110 11 2233456666666666666655322 111
Q ss_pred HHHHHHHHHHH--HcCCHHHHHHHHHhch
Q 042546 617 SVVLCLFAAFF--QARRHSEAQDLLSKCP 643 (671)
Q Consensus 617 ~~~~~l~~~~~--~~g~~~~A~~~~~~m~ 643 (671)
..+..++.+|. ..+++++|.+.|+++.
T Consensus 239 ~~l~~l~~~~~~~~~~~~~~A~~~~~~~~ 267 (292)
T 1qqe_A 239 NFLKSLIDAVNEGDSEQLSEHCKEFDNFM 267 (292)
T ss_dssp HHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhccCC
Confidence 12333445553 3456777777776654
No 92
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.64 E-value=0.00012 Score=76.69 Aligned_cols=202 Identities=9% Similarity=-0.033 Sum_probs=124.3
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 042546 425 GECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKM 504 (671)
Q Consensus 425 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 504 (671)
+.+..+|+++.... +.+...|-..+.-+.+.|++++|.+++++.... +.+...|. .|+...+.++. ++.+
T Consensus 196 ~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~----~y~~~~e~~~~---~~~l 265 (493)
T 2uy1_A 196 SRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSL----YYGLVMDEEAV---YGDL 265 (493)
T ss_dssp HHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHH----HHHHHTTCTHH---HHHH
T ss_pred HHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHH----HHHhhcchhHH---HHHH
Confidence 34556777766543 445667777777777788888888888887766 22322222 22222111111 2222
Q ss_pred HHcC--------CCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-cCCHHHHHHH
Q 042546 505 VEKE--------GTSH---AGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLV-QRGFKDALSL 572 (671)
Q Consensus 505 ~~~~--------g~~p---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~-~g~~~~A~~l 572 (671)
.+.. +..+ ....|...+..+.+.+.++.|..+|+.. ... ..+...|......-.. .++.+.|..+
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~--~~~~~v~i~~A~lE~~~~~d~~~ar~i 342 (493)
T 2uy1_A 266 KRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE--GVGPHVFIYCAFIEYYATGSRATPYNI 342 (493)
T ss_dssp HHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS--CCCHHHHHHHHHHHHHHHCCSHHHHHH
T ss_pred HHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC--CCChHHHHHHHHHHHHHCCChHHHHHH
Confidence 2200 0001 1244666666666778899999999988 321 2344455432222222 3468999999
Q ss_pred HHHHHhCCCCCCHH----HHHHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhchHh
Q 042546 573 LCLMKDHGFPPFVD----PFIKYVSKSGTSDDAIAFLKGMTSKRFPSMSVVLCLFAAFFQARRHSEAQDLLSKCPRY 645 (671)
Q Consensus 573 ~~~m~~~~~~p~~~----t~~~~l~~~g~~~~A~~~~~~m~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 645 (671)
|+...+. .|+.. .|+....+.|+.+.|..+|+.+. .....|...++.-...|+.+.+.++++++.+.
T Consensus 343 fe~al~~--~~~~~~~~~~yid~e~~~~~~~~aR~l~er~~----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~~ 413 (493)
T 2uy1_A 343 FSSGLLK--HPDSTLLKEEFFLFLLRIGDEENARALFKRLE----KTSRMWDSMIEYEFMVGSMELFRELVDQKMDA 413 (493)
T ss_dssp HHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 9988764 24432 24555567899999999999873 25778888888778889999999988886643
No 93
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.64 E-value=1.2e-06 Score=85.36 Aligned_cols=199 Identities=11% Similarity=-0.027 Sum_probs=142.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----HHH
Q 042546 411 LNSVLKALISVGRMGECNKILKAMEEG----GFIAS-SNMKSKIAFRLSSAGKKDEANEFMDHMEASGSD-VG----DKM 480 (671)
Q Consensus 411 ~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-~~----~~~ 480 (671)
|......|...|++++|...|.+..+. |-+++ ..+|+.+...|.+.|++++|...+++..+.... .+ ..+
T Consensus 40 ~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~ 119 (292)
T 1qqe_A 40 CVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANF 119 (292)
T ss_dssp HHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 555567788999999999999887642 32222 468899999999999999999999987643111 11 357
Q ss_pred HHHHHHHHHhc-CCHHHHHHHHHHHHHcCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCH-----
Q 042546 481 WVSLIKGHCVA-GDLDKAADCFQKMVEKEGTSHA----GYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWH----- 550 (671)
Q Consensus 481 ~~~li~~~~~~-g~~~~a~~~~~~m~~~~g~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~----- 550 (671)
++.+...|... |++++|.+.|++..+...-..+ ..++..+...|.+.|++++|...|++......-.+..
T Consensus 120 ~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 199 (292)
T 1qqe_A 120 KFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLK 199 (292)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHH
Confidence 88889999996 9999999999988761110111 3568888999999999999999999998642212221
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH------H---HHHHH--hcCChHHHHHHHHHhhhC
Q 042546 551 TTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDP------F---IKYVS--KSGTSDDAIAFLKGMTSK 611 (671)
Q Consensus 551 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~t------~---~~~l~--~~g~~~~A~~~~~~m~~~ 611 (671)
..|..+..++...|++++|...+++..+ +.|+... + ...+. ..+++++|+..|+.+...
T Consensus 200 ~~~~~lg~~~~~~g~~~~A~~~~~~al~--l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l 269 (292)
T 1qqe_A 200 DYFLKKGLCQLAATDAVAAARTLQEGQS--EDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRL 269 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHGGGC--C---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCcc
Confidence 1567777888899999999999999875 3444311 1 23332 456788888888776654
No 94
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.64 E-value=3.4e-06 Score=80.63 Aligned_cols=99 Identities=12% Similarity=0.001 Sum_probs=75.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC-HHHH
Q 042546 407 TDAMLNSVLKALISVGRMGECNKILKAMEEGGFIAS---SNMKSKIAFRLSSAGKKDEANEFMDHMEASGS-DVG-DKMW 481 (671)
Q Consensus 407 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~~~-~~~~ 481 (671)
+...+-.+...+.+.|++++|...|+++.+.. +.+ ...+..+..+|.+.|++++|...|++..+... .|+ ...+
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 44556667777888999999999999988754 223 56788888889999999999999999887532 122 3456
Q ss_pred HHHHHHHHh--------cCCHHHHHHHHHHHHH
Q 042546 482 VSLIKGHCV--------AGDLDKAADCFQKMVE 506 (671)
Q Consensus 482 ~~li~~~~~--------~g~~~~a~~~~~~m~~ 506 (671)
..+..++.. .|++++|...|++..+
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~ 125 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFID 125 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHH
Confidence 667777777 8889999999988876
No 95
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.63 E-value=2.5e-06 Score=81.57 Aligned_cols=190 Identities=12% Similarity=0.047 Sum_probs=116.1
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCC-H
Q 042546 440 IASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVG----DKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHA-G 514 (671)
Q Consensus 440 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~-~ 514 (671)
+.+...+-.+...+.+.|++++|...|+++.+.. |+ ...+..+..+|.+.|++++|...|++..+...-.|. .
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 89 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG--RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVP 89 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC--SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhH
Confidence 3456667777778888888888888888887753 32 566777888888888888888888888772222222 3
Q ss_pred HHHHHHHHHHHh--------cCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 042546 515 YAIDLLVNTYCS--------KNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVD 586 (671)
Q Consensus 515 ~~~~~li~~~~~--------~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~ 586 (671)
..+..+..+|.. .|++++|...|++......-.+ ..+.++.... ....-+... ..
T Consensus 90 ~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~--~~~~a~~~~~-------~~~~~~~~~--------~~ 152 (261)
T 3qky_A 90 QAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHE--LVDDATQKIR-------ELRAKLARK--------QY 152 (261)
T ss_dssp HHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCT--THHHHHHHHH-------HHHHHHHHH--------HH
T ss_pred HHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCch--hHHHHHHHHH-------HHHHHHHHH--------HH
Confidence 456666677777 8888888888888876532222 1221110000 000000000 12
Q ss_pred HHHHHHHhcCChHHHHHHHHHhhhCCCC---CHHHHHHHHHHHHHc----------CCHHHHHHHHHhchHhhhc
Q 042546 587 PFIKYVSKSGTSDDAIAFLKGMTSKRFP---SMSVVLCLFAAFFQA----------RRHSEAQDLLSKCPRYVRN 648 (671)
Q Consensus 587 t~~~~l~~~g~~~~A~~~~~~m~~~~~p---~~~~~~~l~~~~~~~----------g~~~~A~~~~~~m~~~~~~ 648 (671)
.+...|.+.|++++|+..|+.+.+..+. ....+..+..+|.+. |++++|...+++.....++
T Consensus 153 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~ 227 (261)
T 3qky_A 153 EAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPD 227 (261)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCC
Confidence 2244556677777777777776664332 344566666666655 6777777777776554433
No 96
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.51 E-value=4.4e-06 Score=81.08 Aligned_cols=167 Identities=10% Similarity=-0.014 Sum_probs=118.5
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH-H
Q 042546 406 LTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVS-L 484 (671)
Q Consensus 406 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~-l 484 (671)
.+...+..+...+.+.|++++|...|++..+.. +-+...+..+...|.+.|++++|...+++.... .|+...... .
T Consensus 115 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~~ 191 (287)
T 3qou_A 115 REEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLVA 191 (287)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHHH
T ss_pred CchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHHH
Confidence 334456667777888888888888888887664 446677888888888888888888888887655 355443322 2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 042546 485 IKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQR 564 (671)
Q Consensus 485 i~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g 564 (671)
...+...++.++|.+.+++..+ . -+.+...+..+...|...|++++|...|.++.....-..+...+..+...|...|
T Consensus 192 ~~~l~~~~~~~~a~~~l~~al~-~-~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g 269 (287)
T 3qou_A 192 QIELLXQAADTPEIQQLQQQVA-E-NPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALG 269 (287)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHH-H-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHC
T ss_pred HHHHHhhcccCccHHHHHHHHh-c-CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcC
Confidence 2235666777778888887766 2 2235667777888888888888888888888764211122567788888888888
Q ss_pred CHHHHHHHHHHHH
Q 042546 565 GFKDALSLLCLMK 577 (671)
Q Consensus 565 ~~~~A~~l~~~m~ 577 (671)
+.++|...+++..
T Consensus 270 ~~~~a~~~~r~al 282 (287)
T 3qou_A 270 TGDALASXYRRQL 282 (287)
T ss_dssp TTCHHHHHHHHHH
T ss_pred CCCcHHHHHHHHH
Confidence 8888887777654
No 97
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.51 E-value=1e-05 Score=75.30 Aligned_cols=185 Identities=14% Similarity=0.079 Sum_probs=115.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCH-HHHH
Q 042546 442 SSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSD-VG-DKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAG-YAID 518 (671)
Q Consensus 442 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~-~~~~ 518 (671)
+...+..+...+.+.|++++|...|+++.+.... |. ...+..+..+|.+.|++++|.+.|++..+...-.+.. ..+.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 3445566677788889999999999988765321 11 3567777888888999999999998887722222322 2333
Q ss_pred HHHHHHHh------------------cCCHHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 042546 519 LLVNTYCS------------------KNRAIDACKFVHNCVREYDLKPWHT-TYEELIKNLLVQRGFKDALSLLCLMKDH 579 (671)
Q Consensus 519 ~li~~~~~------------------~g~~~~A~~~~~~m~~~~~~~p~~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~ 579 (671)
.+..+|.. .|+.++|...|+++.+. .|+.. .+.+... .+ .+...+.+
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~P~~~~a~~a~~~----l~------~~~~~~~~- 148 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG---YPNSQYTTDATKR----LV------FLKDRLAK- 148 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT---CTTCTTHHHHHHH----HH------HHHHHHHH-
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH---CcCChhHHHHHHH----HH------HHHHHHHH-
Confidence 34444443 34566666666666543 22221 1111100 00 00000000
Q ss_pred CCCCCHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHhchH
Q 042546 580 GFPPFVDPFIKYVSKSGTSDDAIAFLKGMTSKRFPSM---SVVLCLFAAFFQARRHSEAQDLLSKCPR 644 (671)
Q Consensus 580 ~~~p~~~t~~~~l~~~g~~~~A~~~~~~m~~~~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 644 (671)
........+.+.|++++|+..|+++.+..|.+. ..+..+..+|.+.|++++|.+.++.+..
T Consensus 149 ----~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~ 212 (225)
T 2yhc_A 149 ----YEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA 212 (225)
T ss_dssp ----HHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHh
Confidence 001234556789999999999999998665443 5688899999999999999999988664
No 98
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.47 E-value=2.7e-05 Score=72.42 Aligned_cols=98 Identities=10% Similarity=0.040 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CH-HHHHHH
Q 042546 409 AMLNSVLKALISVGRMGECNKILKAMEEGGFI-A-SSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDV-GD-KMWVSL 484 (671)
Q Consensus 409 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~-~~-~~~~~l 484 (671)
..+..+...+.+.|++++|...|+++.+..-. | ....+..+..+|.+.|++++|...|+++.+..... .. ..+-.+
T Consensus 5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~ 84 (225)
T 2yhc_A 5 NEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMR 84 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHH
Confidence 34555667788999999999999999875311 1 13577888899999999999999999998764221 11 133333
Q ss_pred HHHHHh------------------cCCHHHHHHHHHHHHH
Q 042546 485 IKGHCV------------------AGDLDKAADCFQKMVE 506 (671)
Q Consensus 485 i~~~~~------------------~g~~~~a~~~~~~m~~ 506 (671)
..++.. .|+.++|...|+++.+
T Consensus 85 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~ 124 (225)
T 2yhc_A 85 GLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVR 124 (225)
T ss_dssp HHHHHHHHC--------------CCHHHHHHHHHHHHHHT
T ss_pred HHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHH
Confidence 334433 5789999999999987
No 99
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.45 E-value=2e-05 Score=72.41 Aligned_cols=105 Identities=16% Similarity=0.160 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC----CHHHHHHHH
Q 042546 426 ECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAG----DLDKAADCF 501 (671)
Q Consensus 426 ~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g----~~~~a~~~~ 501 (671)
+|.+.|++..+. -+...+..+-..|...+++++|.+.|++..+.| +...+..+-..|.. + +.++|.++|
T Consensus 4 eA~~~~~~aa~~---g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 4 EPGSQYQQQAEA---GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp CTTHHHHHHHHT---TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred hHHHHHHHHHHC---CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 344555555543 244555555555555666666666666555543 34444444444444 4 555555555
Q ss_pred HHHHHcCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHH
Q 042546 502 QKMVEKEGTSHAGYAIDLLVNTYCS----KNRAIDACKFVHNCV 541 (671)
Q Consensus 502 ~~m~~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~ 541 (671)
++..+ .| +...+..|-..|.. .++.++|.+.|.+..
T Consensus 77 ~~A~~-~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~ 116 (212)
T 3rjv_A 77 EKAVE-AG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAA 116 (212)
T ss_dssp HHHHH-TT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHT
T ss_pred HHHHH-CC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHH
Confidence 55544 33 33344444444444 445555555555544
No 100
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.44 E-value=1.3e-05 Score=73.58 Aligned_cols=187 Identities=9% Similarity=0.006 Sum_probs=111.3
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 042546 338 TCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKA 417 (671)
Q Consensus 338 t~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~ 417 (671)
.+-.....+.+.|++++|+..|++..+. .|+....-.. ..... .........+.+..+
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~----~~~~~----------------~~~~~~~~~~~lg~~ 63 (208)
T 3urz_A 6 EMLQKVSAAIEAGQNGQAVSYFRQTIAL--NIDRTEMYYW----TNVDK----------------NSEISSKLATELALA 63 (208)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CHHHHHHHHH----HHSCT----------------TSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHH----hhhcc----------------hhhhhHHHHHHHHHH
Confidence 3334455677889999999999998753 3332110000 00000 000111223447777
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC--HH
Q 042546 418 LISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGD--LD 495 (671)
Q Consensus 418 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~--~~ 495 (671)
|.+.|++++|...|++..+.. +-+...|..+...|...|++++|...|++..+.. +-+..+|..+...|...|+ .+
T Consensus 64 ~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~~ 141 (208)
T 3urz_A 64 YKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAEQEKK 141 (208)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhHHHHH
Confidence 888888888888888887765 4567788888888888888888888888887764 2356677777777655543 23
Q ss_pred HHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHH
Q 042546 496 KAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYE 554 (671)
Q Consensus 496 ~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~ 554 (671)
.+...++.... ..|....+...-.++...|++++|...|++..+ +.|+.....
T Consensus 142 ~~~~~~~~~~~---~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~---l~P~~~~~~ 194 (208)
T 3urz_A 142 KLETDYKKLSS---PTKMQYARYRDGLSKLFTTRYEKARNSLQKVIL---RFPSTEAQK 194 (208)
T ss_dssp HHHHHHC---C---CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTT---TSCCHHHHH
T ss_pred HHHHHHHHHhC---CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHH---hCCCHHHHH
Confidence 33444443321 222222333334445556778888888877764 556654433
No 101
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.41 E-value=3.5e-06 Score=75.02 Aligned_cols=161 Identities=10% Similarity=-0.017 Sum_probs=107.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HH
Q 042546 411 LNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKG-HC 489 (671)
Q Consensus 411 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~-~~ 489 (671)
+......+.+.|++++|...|++..+.. +.+...+..+...|.+.|++++|...+++..... |+...+...... +.
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELH 85 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHH
Confidence 4455566788888999988888766543 4566778888888888899999988888876543 344333222111 12
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 042546 490 VAGDLDKAADCFQKMVEKEGTSH-AGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKD 568 (671)
Q Consensus 490 ~~g~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~ 568 (671)
..+...+|.+.+++..+ ..| +...+..+...|...|++++|...|++..+...-..+...+..+...+...|+.++
T Consensus 86 ~~~~~~~a~~~~~~al~---~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~ 162 (176)
T 2r5s_A 86 QQAAESPELKRLEQELA---ANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNA 162 (176)
T ss_dssp HHHTSCHHHHHHHHHHH---HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCH
T ss_pred hhcccchHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCc
Confidence 22233346777777765 223 46677777778888888888888888876531111224577777788888888888
Q ss_pred HHHHHHHHH
Q 042546 569 ALSLLCLMK 577 (671)
Q Consensus 569 A~~l~~~m~ 577 (671)
|...|++..
T Consensus 163 A~~~y~~al 171 (176)
T 2r5s_A 163 IASKYRRQL 171 (176)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888777654
No 102
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.38 E-value=1.7e-05 Score=72.75 Aligned_cols=165 Identities=8% Similarity=-0.026 Sum_probs=113.5
Q ss_pred HHHHccCChHHHHHHHHHHHHcCCCCC-HHHHHH----------------HHHHHHhCCChHHHHHHHHHHHhCCCCCCH
Q 042546 309 SVLGREDCIDRFWKVLDEMRSKGYEME-METCVK----------------VLGRFSERNMVKEAVDLYEFAMACKNKPSV 371 (671)
Q Consensus 309 ~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~----------------li~~~~~~g~~~~a~~l~~~m~~~g~~p~~ 371 (671)
..+.+.|++++|...|++..+. .|+ ...|.. +...|.+.|++++|+..|++..+. .
T Consensus 12 ~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~--- 84 (208)
T 3urz_A 12 SAAIEAGQNGQAVSYFRQTIAL--NIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK--A--- 84 (208)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--CHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--C---
T ss_pred HHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--C---
Confidence 3445556666666666665554 222 333444 888899999999999999988752 1
Q ss_pred HHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 042546 372 NCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAF 451 (671)
Q Consensus 372 ~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~ 451 (671)
+.+...+..+..+|...|++++|...|++..+.. +.+..+|..+..
T Consensus 85 ---------------------------------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~ 130 (208)
T 3urz_A 85 ---------------------------------PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGN 130 (208)
T ss_dssp ---------------------------------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred ---------------------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHH
Confidence 2234567888889999999999999999998875 456788888888
Q ss_pred HHHhcCC--HHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHH
Q 042546 452 RLSSAGK--KDEANEFMDHMEASGSDVGDK--MWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLV 521 (671)
Q Consensus 452 ~~~~~g~--~~~A~~~~~~m~~~g~~~~~~--~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li 521 (671)
.|...|. .+.+...+.... .|+.. .+...-.++...|++++|...|++..+ +.|+......+.
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~---l~P~~~~~~~l~ 197 (208)
T 3urz_A 131 YYYLTAEQEKKKLETDYKKLS----SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVIL---RFPSTEAQKTLD 197 (208)
T ss_dssp HHHHHHHHHHHHHHHHHC-------CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTT---TSCCHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHh----CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHH---hCCCHHHHHHHH
Confidence 8876654 445566666554 34443 344445566778999999999999965 678765544443
No 103
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.37 E-value=0.00066 Score=70.98 Aligned_cols=368 Identities=7% Similarity=-0.009 Sum_probs=189.9
Q ss_pred CChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHccCc-HHHHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcC-ChhH
Q 042546 142 SSPDEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGL-VQEFWGLVDVMKKK-GYGV-ASHVRNKMTEKFEKEG-LESD 217 (671)
Q Consensus 142 ~~~~~A~~~f~~m~~~~~~~~~~~~~n~li~~~~~~g~-~~~a~~l~~~m~~~-g~~p-~~~t~~~ll~~~~~~g-~~~~ 217 (671)
|+.+.|..+|+.... ..|++..|..-+.-..+.+. .+....+|+..... |..| +...|...+.-+.... ...+
T Consensus 28 ~~~e~~~~iferal~---~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~ 104 (493)
T 2uy1_A 28 KDYRSLESLFGRCLK---KSYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTR 104 (493)
T ss_dssp TCHHHHHHHHHHHST---TCCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHH
T ss_pred CCHHHHHHHHHHHhc---cCCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHH
Confidence 789999999998876 23789999988888777764 35567788877653 5433 5666766665543211 0112
Q ss_pred HHHHHHHHHc---CCCCChHHHHHHHHHHHHhcCCChhHHHHHHhhcccccChHHHHHHHHHhCCChHHHHHHHHHHHHc
Q 042546 218 LEKLKGIFAT---GSIDNSIEKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEES 294 (671)
Q Consensus 218 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~f~~~~~~ 294 (671)
...+..+|.+ .+..+....+.. ...+.. . .........+....+.+..|..+++.+...
T Consensus 105 ~~~vR~iy~rAL~~P~~~~~~lw~~-Y~~fE~-------------~----~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~ 166 (493)
T 2uy1_A 105 IEKIRNGYMRALQTPMGSLSELWKD-FENFEL-------------E----LNKITGKKIVGDTLPIFQSSFQRYQQIQPL 166 (493)
T ss_dssp HHHHHHHHHHHHTSCCTTHHHHHHH-HHHHHH-------------H----HCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhChhhhHHHHHHH-HHHHHH-------------H----hccccHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 2233333333 222211111000 000000 0 000111111111113344555555544321
Q ss_pred CCCCCCHHHHHHHHHHHHccC--C-----hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCC
Q 042546 295 GFVKHDESSYNAMASVLGRED--C-----IDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKN 367 (671)
Q Consensus 295 ~~~~~~~~~~~~li~~~~~~g--~-----~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~g~ 367 (671)
. ...+...|...+.---..+ - .+.+..+|++..... +-+...|...+.-+.+.|++++|.++|++....
T Consensus 167 ~-~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-- 242 (493)
T 2uy1_A 167 I-RGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-- 242 (493)
T ss_dssp H-HTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred H-hhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--
Confidence 0 0124557777666543321 1 345677888888753 446888888888888999999999999999876
Q ss_pred CCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 042546 368 KPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKS 447 (671)
Q Consensus 368 ~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~ 447 (671)
|....... .|+.....+ ..+.. +...+.. ...+.+. .. .+ ......|.
T Consensus 243 -P~~~~l~~---~y~~~~e~~-~~~~~-------------------l~~~~~~-~~~~~~~-----~~-~~-~~~~~lw~ 290 (493)
T 2uy1_A 243 -SDGMFLSL---YYGLVMDEE-AVYGD-------------------LKRKYSM-GEAESAE-----KV-FS-KELDLLRI 290 (493)
T ss_dssp -CCSSHHHH---HHHHHTTCT-HHHHH-------------------HHHHTC-----------------CH-HHHHHHHH
T ss_pred -CCcHHHHH---HHHhhcchh-HHHHH-------------------HHHHHHh-hccchhh-----hh-cc-cccHHHHH
Confidence 54332211 222211111 01111 1111100 0000000 00 00 01124555
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH--HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHH
Q 042546 448 KIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWV--SLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYC 525 (671)
Q Consensus 448 ~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~--~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~ 525 (671)
..+..+.+.+..+.|..+|+.. +.. ..+...|. +.+.... .++.+.|.++|+...+..+- +...+...++...
T Consensus 291 ~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~-~~d~~~ar~ife~al~~~~~--~~~~~~~yid~e~ 365 (493)
T 2uy1_A 291 NHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYA-TGSRATPYNIFSSGLLKHPD--STLLKEEFFLFLL 365 (493)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHH-HCCSHHHHHHHHHHHHHCTT--CHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHH-CCChHHHHHHHHHHHHHCCC--CHHHHHHHHHHHH
Confidence 6666666666777777777777 211 12333333 2222222 23577777777777662222 2334555666666
Q ss_pred hcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 042546 526 SKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMK 577 (671)
Q Consensus 526 ~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 577 (671)
+.|+.+.|..+|+...+ ....|...+.--...|+.+.+.++++++.
T Consensus 366 ~~~~~~~aR~l~er~~k------~~~lw~~~~~fE~~~G~~~~~r~v~~~~~ 411 (493)
T 2uy1_A 366 RIGDEENARALFKRLEK------TSRMWDSMIEYEFMVGSMELFRELVDQKM 411 (493)
T ss_dssp HHTCHHHHHHHHHHSCC------BHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH------HHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 77777777777777642 35667777766666777777777777665
No 104
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.36 E-value=1.2e-05 Score=86.72 Aligned_cols=130 Identities=11% Similarity=-0.003 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 042546 409 AMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGH 488 (671)
Q Consensus 409 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~ 488 (671)
..+..+...|.+.|++++|.+.|++..+.. +.+...|..+...|.+.|++++|.+.+++..+.. +.+...+..+...|
T Consensus 24 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~ 101 (568)
T 2vsy_A 24 VAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAA-PEHPGIALWLGHAL 101 (568)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 344444444444555555555555444432 2234444444444445555555555554444432 12334444444444
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHH
Q 042546 489 CVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSK---NRAIDACKFVHNCVR 542 (671)
Q Consensus 489 ~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~---g~~~~A~~~~~~m~~ 542 (671)
.+.|++++|.+.+++..+ .. ..+...+..+...|... |+.++|.+.+++..+
T Consensus 102 ~~~g~~~~A~~~~~~al~-~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 102 EDAGQAEAAAAAYTRAHQ-LL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHTTCHHHHHHHHHHHHH-HC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHH-hC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 555555555555544443 11 11233444444444444 445555554444443
No 105
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.36 E-value=5.1e-05 Score=74.32 Aligned_cols=231 Identities=13% Similarity=0.011 Sum_probs=143.2
Q ss_pred CChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHH
Q 042546 279 DEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDL 358 (671)
Q Consensus 279 ~~~~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l 358 (671)
|++++|.+++++..+.. +.. .+...+++++|...|.+. ...|...|++++|...
T Consensus 5 ~~~~eA~~~~~~a~k~~--~~~---------~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~ 58 (307)
T 2ifu_A 5 QKISEAHEHIAKAEKYL--KTS---------FMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKDA 58 (307)
T ss_dssp HHHHHHHHHHHHHHHHH--CCC---------SSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHHH
T ss_pred chHHHHHHHHHHHHHHc--ccc---------ccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHHH
Confidence 67788888888776421 111 011157788888887764 4567788999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-
Q 042546 359 YEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEG- 437 (671)
Q Consensus 359 ~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~- 437 (671)
|.+..+. +-+.+... .-..+|+.+...|.+.|++++|...|++..+.
T Consensus 59 ~~~al~~---------------~~~~~~~~-----------------~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~ 106 (307)
T 2ifu_A 59 YLQEAEA---------------HANNRSLF-----------------HAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMY 106 (307)
T ss_dssp HHHHHHH---------------HHHTTCHH-----------------HHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH
T ss_pred HHHHHHH---------------HHHcCCHH-----------------HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 9887631 11111100 00135777788889999999999999876542
Q ss_pred ---CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-C----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 042546 438 ---GFIAS--SNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDV-G----DKMWVSLIKGHCVAGDLDKAADCFQKMVEK 507 (671)
Q Consensus 438 ---g~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~-~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 507 (671)
| .+. ..+++.+...|.+ |++++|+..|++..+..... + ..+++.+...|.+.|++++|.+.|++..+.
T Consensus 107 ~~~g-~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 184 (307)
T 2ifu_A 107 VENG-TPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSM 184 (307)
T ss_dssp HTTT-CHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHcC-CHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 2 111 3567777788877 99999988888775421111 1 356777788888888888888888877651
Q ss_pred ---CCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHhcCCHHHHHH
Q 042546 508 ---EGTSHA-GYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWH---TTYEELIKNLLVQRGFKDALS 571 (671)
Q Consensus 508 ---~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~---~~~~~li~~~~~~g~~~~A~~ 571 (671)
.+..+. ...+..+..++...|++++|...|++.. ...-.++. .....++.++ ..|+.+.+.+
T Consensus 185 ~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 185 YKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 111111 2245556666677788888888888775 32111121 1233444444 4566555544
No 106
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.34 E-value=6.4e-05 Score=69.05 Aligned_cols=126 Identities=15% Similarity=0.124 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC----CHHHHHHHHHHHHHCCCCCCHHHHHH
Q 042546 408 DAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAG----KKDEANEFMDHMEASGSDVGDKMWVS 483 (671)
Q Consensus 408 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g----~~~~A~~~~~~m~~~g~~~~~~~~~~ 483 (671)
...+..+-..|...+++++|.+.|++..+.| +...+..|-..|.. + +.++|.+.|++..+.| +...+..
T Consensus 18 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a~~~ 90 (212)
T 3rjv_A 18 RRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSGEIV 90 (212)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHHHHH
Confidence 3344444444444555555555555544432 33344444444444 3 4555555555544432 3334444
Q ss_pred HHHHHHh----cCCHHHHHHHHHHHHHcCCCC-CCHHHHHHHHHHHHh----cCCHHHHHHHHHHHH
Q 042546 484 LIKGHCV----AGDLDKAADCFQKMVEKEGTS-HAGYAIDLLVNTYCS----KNRAIDACKFVHNCV 541 (671)
Q Consensus 484 li~~~~~----~g~~~~a~~~~~~m~~~~g~~-p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~ 541 (671)
+-..|.. .++.++|.++|++..+ .+.. .+...+..|-..|.. .++.++|...|++..
T Consensus 91 Lg~~y~~g~g~~~d~~~A~~~~~~A~~-~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~ 156 (212)
T 3rjv_A 91 LARVLVNRQAGATDVAHAITLLQDAAR-DSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSS 156 (212)
T ss_dssp HHHHHTCGGGSSCCHHHHHHHHHHHTS-STTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCccCHHHHHHHHHHHHH-cCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 4444443 4445555555554433 2211 013334444444444 344444444444443
No 107
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.33 E-value=0.00039 Score=67.20 Aligned_cols=218 Identities=8% Similarity=-0.023 Sum_probs=163.2
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH----Hhc-
Q 042546 419 ISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAG--KKDEANEFMDHMEASGSDVGDKMWVSLIKGH----CVA- 491 (671)
Q Consensus 419 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~----~~~- 491 (671)
.+....++|+++++.+.... +-+...|+.--..+...| +++++++.++.+.... +-+..+|+.--..+ .+.
T Consensus 44 ~~~e~s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~ 121 (306)
T 3dra_A 44 KAEEYSERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNN 121 (306)
T ss_dssp HTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTT
T ss_pred HcCCCCHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhcc
Confidence 34444579999999998765 456677888888888888 9999999999998764 23445566544444 444
Q ss_pred --CCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHH--HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC--
Q 042546 492 --GDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAI--DACKFVHNCVREYDLKPWHTTYEELIKNLLVQRG-- 565 (671)
Q Consensus 492 --g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~--~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~-- 565 (671)
+++++++++++.+.+ . -+-+..+|+----.+.+.|.++ ++.+.++.+.+. -.-|...|+.-...+.+.+.
T Consensus 122 ~~~~~~~EL~~~~~~l~-~-~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~--d~~N~sAW~~R~~ll~~l~~~~ 197 (306)
T 3dra_A 122 NDFDPYREFDILEAMLS-S-DPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDT--DLKNNSAWSHRFFLLFSKKHLA 197 (306)
T ss_dssp TCCCTHHHHHHHHHHHH-H-CTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHSSGGGC
T ss_pred ccCCHHHHHHHHHHHHH-h-CCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccccc
Confidence 789999999999987 2 2336677777666777788888 999999999875 34577788877666777676
Q ss_pred ----HHHHHHHHHHHHhCCCCCCHHH-H---HHHHHhcCCh-HHHHHHHHHhhhCC---CCCHHHHHHHHHHHHHcCCHH
Q 042546 566 ----FKDALSLLCLMKDHGFPPFVDP-F---IKYVSKSGTS-DDAIAFLKGMTSKR---FPSMSVVLCLFAAFFQARRHS 633 (671)
Q Consensus 566 ----~~~A~~l~~~m~~~~~~p~~~t-~---~~~l~~~g~~-~~A~~~~~~m~~~~---~p~~~~~~~l~~~~~~~g~~~ 633 (671)
++++++.++++... .|+..+ + ..++.+.|+. +++..+.+++...+ +.+...+..+.++|.+.|+.+
T Consensus 198 ~~~~~~eEl~~~~~aI~~--~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~ 275 (306)
T 3dra_A 198 TDNTIDEELNYVKDKIVK--CPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYN 275 (306)
T ss_dssp CHHHHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHH
T ss_pred hhhhHHHHHHHHHHHHHh--CCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHH
Confidence 89999999998864 454433 2 3445666764 44566777766543 578899999999999999999
Q ss_pred HHHHHHHhchH
Q 042546 634 EAQDLLSKCPR 644 (671)
Q Consensus 634 ~A~~~~~~m~~ 644 (671)
+|.++++.+.+
T Consensus 276 ~A~~~~~~l~~ 286 (306)
T 3dra_A 276 ESRTVYDLLKS 286 (306)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999999875
No 108
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.32 E-value=5.3e-06 Score=91.11 Aligned_cols=171 Identities=11% Similarity=-0.052 Sum_probs=117.0
Q ss_pred CCChHHHHHHHHHHH--------HcCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhC
Q 042546 278 GDEPKKALIFFRWAE--------ESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSER 349 (671)
Q Consensus 278 ~~~~~~A~~~f~~~~--------~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~ 349 (671)
.|++++|++.|++.. +.. +.+...|..+...|.+.|++++|.+.|++..+.. +-+...|..+-.++.+.
T Consensus 404 ~~~~~~A~~~~~~al~~~~~~~~~~~--p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 404 LSQPVQTLDSLRAARHGALDADGVDF--SESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TCCHHHHHHHHHHHHTC-------CC--TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHhhhhccccccccc--ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHc
Confidence 488899999988876 321 4456778888888888888888888888887653 22567777788888888
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 042546 350 NMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNK 429 (671)
Q Consensus 350 g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 429 (671)
|++++|.+.|++..+. .| .+...|..+..+|.+.|++++ .+
T Consensus 481 g~~~~A~~~~~~al~l--~P------------------------------------~~~~~~~~lg~~~~~~g~~~~-~~ 521 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDT--FP------------------------------------GELAPKLALAATAELAGNTDE-HK 521 (681)
T ss_dssp TCHHHHHHHHHHHHHH--ST------------------------------------TCSHHHHHHHHHHHHHTCCCT-TC
T ss_pred CCHHHHHHHHHHHHHh--CC------------------------------------CChHHHHHHHHHHHHcCChHH-HH
Confidence 8888888888877642 11 122345666667777788877 77
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCC
Q 042546 430 ILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVG-DKMWVSLIKGHCVAGD 493 (671)
Q Consensus 430 ~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~ 493 (671)
.|++..+.. +.+...|..+..+|.+.|++++|.+.|++..+. .|+ ...|..+..++...+.
T Consensus 522 ~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 522 FYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRTLDEVPPT--SRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTT--STTHHHHHHHHHHHTC----
T ss_pred HHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHHHHhhccc--CcccHHHHHHHHHHHHccCC
Confidence 777777654 345667777777777888888888877776654 344 3455555555554443
No 109
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.32 E-value=0.00023 Score=69.02 Aligned_cols=165 Identities=8% Similarity=-0.066 Sum_probs=115.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----HHHHH
Q 042546 413 SVLKALISVGRMGECNKILKAMEEGG-FIASS----NMKSKIAFRLSSAGKKDEANEFMDHMEASGSD-VG----DKMWV 482 (671)
Q Consensus 413 ~li~~~~~~g~~~~A~~~~~~m~~~g-~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-~~----~~~~~ 482 (671)
..+..+...|++++|..++++..+.. ..|+. ..+..+...+...|++++|...|++..+.... ++ ..+++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 34677888999999999999887642 12221 13334666677778999999999998874222 22 23688
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHc---C-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHh---CCCCCC-HHHH
Q 042546 483 SLIKGHCVAGDLDKAADCFQKMVEK---E-GTSHA-GYAIDLLVNTYCSKNRAIDACKFVHNCVRE---YDLKPW-HTTY 553 (671)
Q Consensus 483 ~li~~~~~~g~~~~a~~~~~~m~~~---~-g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~~p~-~~~~ 553 (671)
.+...|...|++++|...|+++.+. . +..+. ..++..+...|.+.|++++|...+++..+. .+..+. ..+|
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 8888899999999999999888731 1 22222 236777888888899999999888876542 222222 4577
Q ss_pred HHHHHHHHhcC-CHHHHHHHHHHHH
Q 042546 554 EELIKNLLVQR-GFKDALSLLCLMK 577 (671)
Q Consensus 554 ~~li~~~~~~g-~~~~A~~l~~~m~ 577 (671)
..+-..|.+.| ..++|.+.+++..
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 77778888888 4688888887764
No 110
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.31 E-value=6.5e-06 Score=90.41 Aligned_cols=152 Identities=13% Similarity=-0.013 Sum_probs=71.2
Q ss_pred HhcCCHHHHHHHHHHHH--------HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 042546 419 ISVGRMGECNKILKAME--------EGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCV 490 (671)
Q Consensus 419 ~~~g~~~~A~~~~~~m~--------~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~ 490 (671)
...|++++|.+.+++.. +.. +.+...|..+...|.+.|++++|.+.|++..+.. .-+...|..+-..|..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence 44555555555555554 211 2333445555555555555555555555554432 2234445555555555
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 042546 491 AGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDAL 570 (671)
Q Consensus 491 ~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 570 (671)
.|++++|.+.|++..+ .. .-+...+..+-.+|.+.|++++ .+.|++..+. -.-+...|..+..+|.+.|++++|+
T Consensus 480 ~g~~~~A~~~~~~al~-l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~ 554 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLD-TF-PGELAPKLALAATAELAGNTDE-HKFYQTVWST--NDGVISAAFGLARARSAEGDRVGAV 554 (681)
T ss_dssp HTCHHHHHHHHHHHHH-HS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred cCCHHHHHHHHHHHHH-hC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHh--CCchHHHHHHHHHHHHHcCCHHHHH
Confidence 5555555555555544 11 1123344444445555555555 5555554432 1113334444445555555555555
Q ss_pred HHHHHHH
Q 042546 571 SLLCLMK 577 (671)
Q Consensus 571 ~l~~~m~ 577 (671)
+.|++..
T Consensus 555 ~~~~~al 561 (681)
T 2pzi_A 555 RTLDEVP 561 (681)
T ss_dssp HHHHTSC
T ss_pred HHHHhhc
Confidence 5555443
No 111
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.30 E-value=6.5e-05 Score=73.57 Aligned_cols=208 Identities=13% Similarity=0.056 Sum_probs=125.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCC---CC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCCC-CHHHHHH
Q 042546 449 IAFRLSSAGKKDEANEFMDHMEASGS---DV--GDKMWVSLIKGHCVAGDLDKAADCFQKMVEK---EGTSH-AGYAIDL 519 (671)
Q Consensus 449 li~~~~~~g~~~~A~~~~~~m~~~g~---~~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---~g~~p-~~~~~~~ 519 (671)
....|...|++++|...|.+..+... .+ -..+|+.+...|.+.|++++|...|++..+. .|-.. -..++..
T Consensus 42 a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~ 121 (307)
T 2ifu_A 42 AAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDR 121 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 34567778888888888877653210 11 1346777778888888888888888876541 11111 1346667
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCCHH-HH--
Q 042546 520 LVNTYCSKNRAIDACKFVHNCVREYDLKPW----HTTYEELIKNLLVQRGFKDALSLLCLMKDH----GFPPFVD-PF-- 588 (671)
Q Consensus 520 li~~~~~~g~~~~A~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----~~~p~~~-t~-- 588 (671)
+-..|.. |++++|...|++......-..+ ..++..+...|.+.|++++|++.|++..+. +..+... .+
T Consensus 122 lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 200 (307)
T 2ifu_A 122 AGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIA 200 (307)
T ss_dssp HHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHH
Confidence 7777877 8888888888876542110001 356777788888889999999888877642 1111111 12
Q ss_pred -HHHHHhcCChHHHHHHHHHhhhCCC--CCH---HHHHHHHHHHHHcCCHHHHHHHHHhchHhhhccHHHHHHHHhhh
Q 042546 589 -IKYVSKSGTSDDAIAFLKGMTSKRF--PSM---SVVLCLFAAFFQARRHSEAQDLLSKCPRYVRNHADVLNLLYSKK 660 (671)
Q Consensus 589 -~~~l~~~g~~~~A~~~~~~m~~~~~--p~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~l~~~m~ 660 (671)
...+...|++++|...|++.. ..+ ++. .....++.++ ..|+.+.+.++ .+-+.-....+....+...+.
T Consensus 201 ~g~~~~~~g~~~~A~~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~~-~~~~~~~~ld~~~~~~~~~l~ 275 (307)
T 2ifu_A 201 QVLVQLHRADYVAAQKCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLRV-CRSPLVTYMDNDYAKLAISLK 275 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHHH-TTSHHHHTSCHHHHHHHHTCC
T ss_pred HHHHHHHcCCHHHHHHHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHHH-HhCchhhhhhHHHHHHHHhCC
Confidence 222345689999999998887 433 121 2344455555 57887777773 333322233444455555554
No 112
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.29 E-value=1.6e-05 Score=77.00 Aligned_cols=164 Identities=12% Similarity=0.066 Sum_probs=79.1
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 042546 300 DESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLR 379 (671)
Q Consensus 300 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~ 379 (671)
+...+..+...+.+.|++++|...|++..+.. +-+...+..+...+.+.|++++|...+++...
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~--------------- 179 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPL--------------- 179 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCG---------------
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCch---------------
Confidence 34445555555556666666666666555542 11345555555555566666666555554432
Q ss_pred HHHhcCcccHHHHHHHHHHHHHcCCCCCHHHHH-HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 042546 380 KIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLN-SVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGK 458 (671)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 458 (671)
..|+..... .....+.+.++.++|...+++..+.. +.+...+..+...|...|+
T Consensus 180 ------------------------~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~ 234 (287)
T 3qou_A 180 ------------------------QDQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGR 234 (287)
T ss_dssp ------------------------GGCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred ------------------------hhcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHccc
Confidence 112222111 11122344445555555555554433 3344555555555555555
Q ss_pred HHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 042546 459 KDEANEFMDHMEASGSDV-GDKMWVSLIKGHCVAGDLDKAADCFQKM 504 (671)
Q Consensus 459 ~~~A~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m 504 (671)
+++|...|.++.+..... +...+..+...+...|+.++|...+++.
T Consensus 235 ~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~a 281 (287)
T 3qou_A 235 NEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALASXYRRQ 281 (287)
T ss_dssp HHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 555555555555432110 1344555555555555555555554443
No 113
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.28 E-value=3.2e-05 Score=67.57 Aligned_cols=127 Identities=9% Similarity=-0.097 Sum_probs=76.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 042546 410 MLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHC 489 (671)
Q Consensus 410 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~ 489 (671)
.+..+...+...|++++|...|++..+.. +.+..+|..+...+...|++++|.+.+++..+.. +.+...|..+...+.
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence 35566666777777777777777766543 3456666677777777777777777777766543 234556666666666
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCCHHHH--HHHHHHHHhcCCHHHHHHHHHHH
Q 042546 490 VAGDLDKAADCFQKMVEKEGTSHAGYAI--DLLVNTYCSKNRAIDACKFVHNC 540 (671)
Q Consensus 490 ~~g~~~~a~~~~~~m~~~~g~~p~~~~~--~~li~~~~~~g~~~~A~~~~~~m 540 (671)
..|++++|.+.+++..+...- +...+ ..+...+.+.|++++|...+...
T Consensus 93 ~~~~~~~A~~~~~~a~~~~p~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVKPH--DKDAKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHSTT--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 777777777777666651111 22222 22333345556666666665544
No 114
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.28 E-value=2.7e-05 Score=83.85 Aligned_cols=154 Identities=10% Similarity=-0.065 Sum_probs=111.9
Q ss_pred CCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHH
Q 042546 278 GDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVD 357 (671)
Q Consensus 278 ~~~~~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~ 357 (671)
.|+.++|.+.|++..+.. +.+...|..+...|.+.|++++|.+.|++..+.. +.+...|..+...|...|++++|.+
T Consensus 2 ~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~ 78 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR--PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAV 78 (568)
T ss_dssp ---------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 378889999998876532 4567888999999999999999999999988763 2357888888899999999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 042546 358 LYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEG 437 (671)
Q Consensus 358 l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 437 (671)
.|++..+. .+.+...+..+..+|.+.|++++|.+.|++..+.
T Consensus 79 ~~~~al~~--------------------------------------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 120 (568)
T 2vsy_A 79 LLQQASDA--------------------------------------APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQL 120 (568)
T ss_dssp HHHHHHHH--------------------------------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhc--------------------------------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 99887641 2335678888889999999999999999998876
Q ss_pred CCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHCC
Q 042546 438 GFIASSNMKSKIAFRLSSA---GKKDEANEFMDHMEASG 473 (671)
Q Consensus 438 g~~~~~~~~~~li~~~~~~---g~~~~A~~~~~~m~~~g 473 (671)
. +.+...+..+...+... |+.++|.+.+++..+.+
T Consensus 121 ~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 121 L-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp C-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred C-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 4 45677888888899998 99999999999988765
No 115
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.28 E-value=0.00015 Score=70.49 Aligned_cols=160 Identities=7% Similarity=-0.101 Sum_probs=101.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCC----HHHHHHH
Q 042546 485 IKGHCVAGDLDKAADCFQKMVEKEGTSHAGY----AIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPW----HTTYEEL 556 (671)
Q Consensus 485 i~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~----~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~----~~~~~~l 556 (671)
+..+...|++++|.+++++..+.....|+.. .+..+...|...|++++|...|+.......-.++ ..+|+.+
T Consensus 82 i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~l 161 (293)
T 3u3w_A 82 VIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAI 161 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 5566777777777777777765233333321 2334555666667777887777777652111222 2357777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHh----C-CCCCCHH----HHHHHHHhcCChHHHHHHHHHhhhC-----CCC-CHHHHHH
Q 042546 557 IKNLLVQRGFKDALSLLCLMKD----H-GFPPFVD----PFIKYVSKSGTSDDAIAFLKGMTSK-----RFP-SMSVVLC 621 (671)
Q Consensus 557 i~~~~~~g~~~~A~~l~~~m~~----~-~~~p~~~----t~~~~l~~~g~~~~A~~~~~~m~~~-----~~p-~~~~~~~ 621 (671)
...|...|++++|++.+++..+ . +..+... .+...|.+.|++++|..++++..+. ..+ -...|..
T Consensus 162 g~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 241 (293)
T 3u3w_A 162 ANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQ 241 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 7777778888888887777663 1 1111111 1244556788888888888776641 122 2678999
Q ss_pred HHHHHHHcCC-HHHHHHHHHhchH
Q 042546 622 LFAAFFQARR-HSEAQDLLSKCPR 644 (671)
Q Consensus 622 l~~~~~~~g~-~~~A~~~~~~m~~ 644 (671)
+..+|.+.|+ +++|.+.+++...
T Consensus 242 lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 242 RGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHH
Confidence 9999999994 6999999988653
No 116
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.27 E-value=4.4e-05 Score=70.04 Aligned_cols=126 Identities=10% Similarity=-0.087 Sum_probs=87.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 042546 411 LNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCV 490 (671)
Q Consensus 411 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~ 490 (671)
+..+...+...|++++|...|++.. .|+...|..+...|.+.|++++|.+.|++..+.. +.+...|..+...|..
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHH
Confidence 4455566777888888888887663 5677778888888888888888888888777654 3456677777777888
Q ss_pred cCCHHHHHHHHHHHHHcCCCC--------------C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 042546 491 AGDLDKAADCFQKMVEKEGTS--------------H-AGYAIDLLVNTYCSKNRAIDACKFVHNCVR 542 (671)
Q Consensus 491 ~g~~~~a~~~~~~m~~~~g~~--------------p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 542 (671)
.|++++|.+.|++..+ ..-. | ....+..+..+|.+.|++++|.+.|+....
T Consensus 84 ~~~~~~A~~~~~~al~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 149 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALI-QLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATS 149 (213)
T ss_dssp TTCHHHHHHHHHHHHH-TTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred cccHHHHHHHHHHHHH-hCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 8888888888877766 2211 1 124555666666677777777777766654
No 117
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.25 E-value=6.4e-05 Score=73.05 Aligned_cols=167 Identities=9% Similarity=-0.088 Sum_probs=102.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC---CCC--HHH
Q 042546 411 LNSVLKALISVGRMGECNKILKAMEEGGFIAS-----SNMKSKIAFRLSSAGKKDEANEFMDHMEASGS---DVG--DKM 480 (671)
Q Consensus 411 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---~~~--~~~ 480 (671)
+...+..+...|++++|.+.+.+..+.....+ ...+..+...+...|++++|...+++..+... .+. ..+
T Consensus 78 l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 157 (293)
T 2qfc_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYI 157 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHH
Confidence 44556677788888888888877765431111 12233455556677788888888877764321 111 346
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH---cCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC---CCCC-CHH
Q 042546 481 WVSLIKGHCVAGDLDKAADCFQKMVE---KEGTSH--AGYAIDLLVNTYCSKNRAIDACKFVHNCVREY---DLKP-WHT 551 (671)
Q Consensus 481 ~~~li~~~~~~g~~~~a~~~~~~m~~---~~g~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~---~~~p-~~~ 551 (671)
|+.+...|...|++++|...|++..+ ..+-.+ ...++..+...|.+.|++++|...+++..... +... -..
T Consensus 158 ~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~ 237 (293)
T 2qfc_A 158 ENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQ 237 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 77777778888888888888877762 111111 12466677777777888888887777665321 1111 145
Q ss_pred HHHHHHHHHHhcCCHHHH-HHHHHHHH
Q 042546 552 TYEELIKNLLVQRGFKDA-LSLLCLMK 577 (671)
Q Consensus 552 ~~~~li~~~~~~g~~~~A-~~l~~~m~ 577 (671)
+|..+...|.+.|+.++| ...+++..
T Consensus 238 ~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 238 LYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 666667777777777777 55565543
No 118
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.25 E-value=0.00069 Score=65.49 Aligned_cols=219 Identities=9% Similarity=-0.009 Sum_probs=103.4
Q ss_pred ChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHccC--ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH----HhC---C
Q 042546 280 EPKKALIFFRWAEESGFVKHDESSYNAMASVLGRED--CIDRFWKVLDEMRSKGYEMEMETCVKVLGRF----SER---N 350 (671)
Q Consensus 280 ~~~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~----~~~---g 350 (671)
..++|++.++.+.... +-+...||.--..+...| ++++++++++.+....- -+..+|+.--..+ ... +
T Consensus 48 ~s~~aL~~t~~~L~~n--P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nP-k~y~aW~~R~~iL~~~~~~l~~~~ 124 (306)
T 3dra_A 48 YSERALHITELGINEL--ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNE-KNYQIWNYRQLIIGQIMELNNNDF 124 (306)
T ss_dssp CSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCT-TCCHHHHHHHHHHHHHHHHTTTCC
T ss_pred CCHHHHHHHHHHHHHC--cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCc-ccHHHHHHHHHHHHHHHHhccccC
Confidence 3345666666555422 334455555555555555 56666666666655421 1334444332222 223 4
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH--HHH
Q 042546 351 MVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMG--ECN 428 (671)
Q Consensus 351 ~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~--~A~ 428 (671)
++++++++++.+.+. .+.+..+|+--.-.+.+.|.++ +++
T Consensus 125 ~~~~EL~~~~~~l~~--------------------------------------~pkny~aW~~R~~vl~~l~~~~~~~EL 166 (306)
T 3dra_A 125 DPYREFDILEAMLSS--------------------------------------DPKNHHVWSYRKWLVDTFDLHNDAKEL 166 (306)
T ss_dssp CTHHHHHHHHHHHHH--------------------------------------CTTCHHHHHHHHHHHHHTTCTTCHHHH
T ss_pred CHHHHHHHHHHHHHh--------------------------------------CCCCHHHHHHHHHHHHHhcccChHHHH
Confidence 555555555555431 1122223333333334444444 556
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCC------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH-HHHHH
Q 042546 429 KILKAMEEGGFIASSNMKSKIAFRLSSAGK------KDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDK-AADCF 501 (671)
Q Consensus 429 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~------~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~-a~~~~ 501 (671)
+.++++.+.. +.|...|+--...+.+.+. ++++++.++++.... +-|...|+-.-..+.+.|+... +.++.
T Consensus 167 ~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~ 244 (306)
T 3dra_A 167 SFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFS 244 (306)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHH
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHH
Confidence 6666665544 3455555554444444444 555555555555443 2344555555555555554222 33343
Q ss_pred HHHHHcCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 042546 502 QKMVEKEG--TSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVR 542 (671)
Q Consensus 502 ~~m~~~~g--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 542 (671)
.+..+ .+ -..+...+..+.+.|.+.|+.++|.++++.+.+
T Consensus 245 ~~~~~-~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 245 LQFVD-LEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp HTTEE-GGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHh-ccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 33332 11 122344455555555555555555555555543
No 119
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.24 E-value=0.00015 Score=70.39 Aligned_cols=93 Identities=9% Similarity=0.029 Sum_probs=42.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC----CCCC-HH
Q 042546 411 LNSVLKALISVGRMGECNKILKAMEEG-GFIAS-----SNMKSKIAFRLSSAGKKDEANEFMDHMEASG----SDVG-DK 479 (671)
Q Consensus 411 ~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g----~~~~-~~ 479 (671)
++.+...|...|++++|...|++..+. ...|+ ..+|+.+...|.+.|++++|.+.+++..+.. .... ..
T Consensus 158 ~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~ 237 (293)
T 2qfc_A 158 ENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQ 237 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 455555555556666665555554411 00111 1344555555555555555555555443210 0000 23
Q ss_pred HHHHHHHHHHhcCCHHHH-HHHHHH
Q 042546 480 MWVSLIKGHCVAGDLDKA-ADCFQK 503 (671)
Q Consensus 480 ~~~~li~~~~~~g~~~~a-~~~~~~ 503 (671)
+|..+...|.+.|+.++| ...+++
T Consensus 238 ~~~~lg~~y~~~g~~~~Ai~~~~~~ 262 (293)
T 2qfc_A 238 LYYQRGECLRKLEYEEAEIEDAYKK 262 (293)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 444444445555555554 333443
No 120
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.24 E-value=1.6e-05 Score=70.63 Aligned_cols=162 Identities=12% Similarity=0.058 Sum_probs=91.4
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 042546 304 YNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVV 383 (671)
Q Consensus 304 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~ 383 (671)
+..+...+.+.|++++|...|++..+.. +-+...+..+...+.+.|++++|...++...+. .|+...+ .+...
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~-~~~~~--- 81 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLE--YQDNSYK-SLIAK--- 81 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG--GCCHHHH-HHHHH---
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc--cCChHHH-HHHHH---
Confidence 4445566777788888888887765432 225667777777788888888888888776532 2222111 11000
Q ss_pred cCcccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 042546 384 SKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEAN 463 (671)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 463 (671)
+ .+...+...+|...|++..+.. +.+...+..+...+...|++++|.
T Consensus 82 -------------------------------~-~~~~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~ 128 (176)
T 2r5s_A 82 -------------------------------L-ELHQQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEAL 128 (176)
T ss_dssp -------------------------------H-HHHHHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred -------------------------------H-HHHhhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHH
Confidence 0 0011111223455555555433 234566666666666667777777
Q ss_pred HHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 042546 464 EFMDHMEASGSDV-GDKMWVSLIKGHCVAGDLDKAADCFQKMV 505 (671)
Q Consensus 464 ~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 505 (671)
..|+++.+....+ +...+..+...+...|+.++|...|++..
T Consensus 129 ~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al 171 (176)
T 2r5s_A 129 ELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQL 171 (176)
T ss_dssp HHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred HHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence 7666666553222 23456666666666666666666666543
No 121
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.22 E-value=4.7e-05 Score=66.46 Aligned_cols=129 Identities=9% Similarity=-0.092 Sum_probs=96.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Q 042546 444 NMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNT 523 (671)
Q Consensus 444 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~ 523 (671)
..|..+...+...|++++|...|++..+.. +.+..++..+...+...|++++|.+.+++..+ .. +.+...+..+..+
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~-~~-~~~~~~~~~~a~~ 90 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIE-LD-KKYIKGYYRRAAS 90 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hC-cccHHHHHHHHHH
Confidence 456677778888999999999999887754 34677888888888999999999999988877 32 3356678888888
Q ss_pred HHhcCCHHHHHHHHHHHHHhCCCCCCHHHH--HHHHHHHHhcCCHHHHHHHHHHHH
Q 042546 524 YCSKNRAIDACKFVHNCVREYDLKPWHTTY--EELIKNLLVQRGFKDALSLLCLMK 577 (671)
Q Consensus 524 ~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~--~~li~~~~~~g~~~~A~~l~~~m~ 577 (671)
|.+.|++++|...|++..... +.+...+ ..+...+...|++++|++.+....
T Consensus 91 ~~~~~~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 91 NMALGKFRAALRDYETVVKVK--PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 888999999999998887642 2233444 333334667788888888877654
No 122
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.21 E-value=6.6e-05 Score=61.59 Aligned_cols=95 Identities=19% Similarity=0.198 Sum_probs=54.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 042546 410 MLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHC 489 (671)
Q Consensus 410 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~ 489 (671)
.+..+...+...|++++|.+.|+++.+.. +.+..++..+...+.+.|++++|...++++.+.. +.+..++..+...+.
T Consensus 11 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHH
Confidence 45555556666666666666666665443 2345555566666666666666666666655442 234455555555556
Q ss_pred hcCCHHHHHHHHHHHHH
Q 042546 490 VAGDLDKAADCFQKMVE 506 (671)
Q Consensus 490 ~~g~~~~a~~~~~~m~~ 506 (671)
..|++++|.+.++++.+
T Consensus 89 ~~~~~~~A~~~~~~~~~ 105 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALE 105 (125)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHH
Confidence 66666666666655554
No 123
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.20 E-value=6.9e-05 Score=68.68 Aligned_cols=128 Identities=9% Similarity=-0.009 Sum_probs=96.0
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 042546 303 SYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIV 382 (671)
Q Consensus 303 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~ 382 (671)
.+..+...+.+.|++++|...|++. +.|+...|..+...+.+.|++++|+..|++..+.
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~----------------- 66 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINR----------------- 66 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----------------
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHH----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----------------
Confidence 3455666777888888888888766 3567888888888888888888888888877642
Q ss_pred hcCcccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----------------HHHH
Q 042546 383 VSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIAS----------------SNMK 446 (671)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~----------------~~~~ 446 (671)
.+.+...+..+..+|...|++++|...|++..+.. +.+ ...+
T Consensus 67 ---------------------~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~ 124 (213)
T 1hh8_A 67 ---------------------DKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQL-RGNQLIDYKILGLQFKLFACEVL 124 (213)
T ss_dssp ---------------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-TTCSEEECGGGTBCCEEEHHHHH
T ss_pred ---------------------CccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCccHHHHHHhccccCccchHHH
Confidence 11233456777778888888888888888887643 122 2677
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 042546 447 SKIAFRLSSAGKKDEANEFMDHMEASG 473 (671)
Q Consensus 447 ~~li~~~~~~g~~~~A~~~~~~m~~~g 473 (671)
..+...|.+.|++++|.+.|++..+..
T Consensus 125 ~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 125 YNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 788888888889999988888887653
No 124
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.18 E-value=3e-05 Score=70.40 Aligned_cols=158 Identities=11% Similarity=0.044 Sum_probs=101.5
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCCC-CHHHHHHHHHHHHhcCC
Q 042546 419 ISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEA----SGSDV-GDKMWVSLIKGHCVAGD 493 (671)
Q Consensus 419 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~~~-~~~~~~~li~~~~~~g~ 493 (671)
...|++++|.++++..... ......++..+...|...|++++|...+++..+ .+..+ ...++..+...+...|+
T Consensus 3 ~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp ----CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred cccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 4578888888855555431 123556788888888889999999888888764 11111 23557777778888888
Q ss_pred HHHHHHHHHHHHHc---CCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcC
Q 042546 494 LDKAADCFQKMVEK---EGTSH--AGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWH----TTYEELIKNLLVQR 564 (671)
Q Consensus 494 ~~~a~~~~~~m~~~---~g~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~----~~~~~li~~~~~~g 564 (671)
+++|.+.+++..+. .+-.| ....+..+...+...|++++|...+++......-..+. .++..+...+...|
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 161 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEK 161 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCc
Confidence 88888888876651 12121 23456667777888888888888887765321111121 23456666777788
Q ss_pred CHHHHHHHHHHHH
Q 042546 565 GFKDALSLLCLMK 577 (671)
Q Consensus 565 ~~~~A~~l~~~m~ 577 (671)
++++|.+.+++..
T Consensus 162 ~~~~A~~~~~~al 174 (203)
T 3gw4_A 162 NLLEAQQHWLRAR 174 (203)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 8888887777664
No 125
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.16 E-value=1.1e-05 Score=69.53 Aligned_cols=139 Identities=15% Similarity=0.081 Sum_probs=86.9
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 042546 418 LISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKA 497 (671)
Q Consensus 418 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a 497 (671)
+...|++++|...+....... +-+...+-.+...|.+.|++++|.+.|++..+.. +-+..+|..+...|.+.|++++|
T Consensus 7 ~~~~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A 84 (150)
T 4ga2_A 7 RRSKADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENTDKA 84 (150)
T ss_dssp CCCHHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCchHHH
Confidence 345567777777777665321 1123345566777777888888888887777653 33566777777777788888888
Q ss_pred HHHHHHHHHcCCCCC-CHHHHHHHHHHHHhcCCHHHHHHH-HHHHHHhCCCCC-CHHHHHHHHHHHHhcC
Q 042546 498 ADCFQKMVEKEGTSH-AGYAIDLLVNTYCSKNRAIDACKF-VHNCVREYDLKP-WHTTYEELIKNLLVQR 564 (671)
Q Consensus 498 ~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~-~~~m~~~~~~~p-~~~~~~~li~~~~~~g 564 (671)
...|++..+ +.| +...+..+...|.+.|+.++|.+. +++..+ +.| +..+|......+...|
T Consensus 85 ~~~~~~al~---~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~---l~P~~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 85 VECYRRSVE---LNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAK---LFPGSPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HHHHHHHHH---HCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHH---HSTTCHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHH---hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHH---hCcCCHHHHHHHHHHHHHhC
Confidence 888877766 233 355677777777777777665554 455544 233 3444554444444444
No 126
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.15 E-value=8.7e-06 Score=70.16 Aligned_cols=135 Identities=9% Similarity=-0.037 Sum_probs=67.4
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 042546 489 CVAGDLDKAADCFQKMVEKEGTSHA-GYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFK 567 (671)
Q Consensus 489 ~~~g~~~~a~~~~~~m~~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~ 567 (671)
...|++++|.+.+..... ..|+ ...+-.+-..|.+.|++++|.+.|++..+. -+-+...|..+-..|.+.|+++
T Consensus 8 ~~~~~~e~ai~~~~~a~~---~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~~~~~ 82 (150)
T 4ga2_A 8 RSKADVERYIASVQGSTP---SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV--QERDPKAHRFLGLLYELEENTD 82 (150)
T ss_dssp CCHHHHHHHHHHHHHHSC---SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHcChHHHHHHHHHHhcc---cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCchH
Confidence 344555555555555432 2222 223344555566666666666666665542 1223445555555666666666
Q ss_pred HHHHHHHHHHhCCCCCCHHH-H---HHHHHhcCChHHHHHH-HHHhhhCCCCCHHHHHHHHHHHHHcC
Q 042546 568 DALSLLCLMKDHGFPPFVDP-F---IKYVSKSGTSDDAIAF-LKGMTSKRFPSMSVVLCLFAAFFQAR 630 (671)
Q Consensus 568 ~A~~l~~~m~~~~~~p~~~t-~---~~~l~~~g~~~~A~~~-~~~m~~~~~p~~~~~~~l~~~~~~~g 630 (671)
+|+..|++..+. .|+... + ...|.+.|+.++|.+. +++..+..|.+...|......+.+.|
T Consensus 83 ~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 83 KAVECYRRSVEL--NPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence 666666655542 343221 1 2334455555544333 35555544455555555555555554
No 127
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.12 E-value=0.00016 Score=59.16 Aligned_cols=98 Identities=19% Similarity=0.229 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 042546 443 SNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVN 522 (671)
Q Consensus 443 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~ 522 (671)
...|..+...+...|++++|.+.++++.+.. +.+..++..+...+...|++++|...++++.+ .. +.+..++..+..
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~-~~-~~~~~~~~~la~ 85 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE-LD-PNNAEAWYNLGN 85 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHH-hC-CccHHHHHHHHH
Confidence 4566777777778888888888888776653 33566677777777777888888887777766 22 235566677777
Q ss_pred HHHhcCCHHHHHHHHHHHHHh
Q 042546 523 TYCSKNRAIDACKFVHNCVRE 543 (671)
Q Consensus 523 ~~~~~g~~~~A~~~~~~m~~~ 543 (671)
.|...|++++|...|+++...
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 86 AYYKQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHh
Confidence 777777777777777777653
No 128
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.07 E-value=5e-05 Score=73.25 Aligned_cols=95 Identities=11% Similarity=-0.058 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Q 042546 444 NMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNT 523 (671)
Q Consensus 444 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~ 523 (671)
..+..+...+.+.|++++|...|++..+.. +.+...|..+...|.+.|++++|.+.+++..+ . -+-+...+..+..+
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~-~-~p~~~~~~~~lg~~ 81 (281)
T 2c2l_A 5 QELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALE-L-DGQSVKAHFFLGQC 81 (281)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT-S-CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH-h-CCCCHHHHHHHHHH
Confidence 344444445555555555555555554432 12444455555555555555555555555543 1 11233444555555
Q ss_pred HHhcCCHHHHHHHHHHHH
Q 042546 524 YCSKNRAIDACKFVHNCV 541 (671)
Q Consensus 524 ~~~~g~~~~A~~~~~~m~ 541 (671)
|...|++++|...|....
T Consensus 82 ~~~~g~~~~A~~~~~~al 99 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAY 99 (281)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHH
Confidence 555555555555555543
No 129
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.06 E-value=7.1e-05 Score=62.09 Aligned_cols=103 Identities=9% Similarity=-0.041 Sum_probs=58.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH----HHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHHHH
Q 042546 553 YEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPF----IKYVSKSGTSDDAIAFLKGMTSKRFPSMSVVLCLFAAFFQ 628 (671)
Q Consensus 553 ~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~t~----~~~l~~~g~~~~A~~~~~~m~~~~~p~~~~~~~l~~~~~~ 628 (671)
|...-..|.+.|++++|++.|++..+. .|+.... ..++.+.|++++|+..+++..+..+.+...|..+..+|..
T Consensus 16 ~~~~G~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~ 93 (126)
T 4gco_A 16 EKNKGNEYFKKGDYPTAMRHYNEAVKR--DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVA 93 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 334444555555666666655555542 2332211 2334455666666666666666555566667777777777
Q ss_pred cCCHHHHHHHHHhchHhhhccHHHHHHHH
Q 042546 629 ARRHSEAQDLLSKCPRYVRNHADVLNLLY 657 (671)
Q Consensus 629 ~g~~~~A~~~~~~m~~~~~~~~~~~~l~~ 657 (671)
.|++++|.+.|++..+.-++.+++..-+.
T Consensus 94 ~~~~~~A~~~~~~al~l~P~~~~a~~~l~ 122 (126)
T 4gco_A 94 MREWSKAQRAYEDALQVDPSNEEAREGVR 122 (126)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCcCCHHHHHHHH
Confidence 77777777777766555455555544443
No 130
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.04 E-value=0.00013 Score=60.26 Aligned_cols=115 Identities=11% Similarity=-0.053 Sum_probs=64.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 042546 410 MLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHC 489 (671)
Q Consensus 410 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~ 489 (671)
.+..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+...+.
T Consensus 14 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~ 91 (131)
T 2vyi_A 14 RLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLALS 91 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHHHH
Confidence 45555566666666666666666665543 3345566666666666666666666666665542 223455555555666
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcC
Q 042546 490 VAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKN 528 (671)
Q Consensus 490 ~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g 528 (671)
..|++++|.+.+++..+ .. +.+...+..+..++.+.|
T Consensus 92 ~~~~~~~A~~~~~~~~~-~~-p~~~~~~~~l~~~~~~~~ 128 (131)
T 2vyi_A 92 SLNKHVEAVAYYKKALE-LD-PDNETYKSNLKIAELKLR 128 (131)
T ss_dssp HTTCHHHHHHHHHHHHH-HS-TTCHHHHHHHHHHHHHHT
T ss_pred HhCCHHHHHHHHHHHHh-cC-ccchHHHHHHHHHHHHHh
Confidence 66666666666666554 21 113334444444444443
No 131
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.04 E-value=0.00014 Score=60.21 Aligned_cols=95 Identities=9% Similarity=-0.035 Sum_probs=66.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 042546 410 MLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHC 489 (671)
Q Consensus 410 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~ 489 (671)
.+...-..|.+.|++++|.+.|++..+.. +.+...|..+..+|.+.|++++|++.|++..+.. +.+...|..+..++.
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~ 92 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACLV 92 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHH
Confidence 45556667777777777777777776654 4566677777777777777777777777776653 334566777777777
Q ss_pred hcCCHHHHHHHHHHHHH
Q 042546 490 VAGDLDKAADCFQKMVE 506 (671)
Q Consensus 490 ~~g~~~~a~~~~~~m~~ 506 (671)
..|++++|.+.|++..+
T Consensus 93 ~~~~~~~A~~~~~~al~ 109 (126)
T 4gco_A 93 AMREWSKAQRAYEDALQ 109 (126)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHH
Confidence 77777777777777765
No 132
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.04 E-value=0.00012 Score=69.14 Aligned_cols=131 Identities=10% Similarity=-0.100 Sum_probs=80.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC---CHHHH--HHHH
Q 042546 518 DLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPP---FVDPF--IKYV 592 (671)
Q Consensus 518 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p---~~~t~--~~~l 592 (671)
-.....+...|++++|.++|+.+.. ..|+......+-..+.+.+++++|+..|+...... .| +...+ -.++
T Consensus 106 LayA~~L~~~g~y~eA~~~l~~~~~---~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~al 181 (282)
T 4f3v_A 106 MGFAACEAAQGNYADAMEALEAAPV---AGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGVAA 181 (282)
T ss_dssp HHHHHHHHHHTCHHHHHHHHTSSCC---TTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHh---cCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHHHHHHH
Confidence 3455566677777777777777653 23544344444456667777888877776443321 11 11111 3445
Q ss_pred HhcCChHHHHHHHHHhhhCCC-C--CHHHHHHHHHHHHHcCCHHHHHHHHHhchHhhhccHHHH
Q 042546 593 SKSGTSDDAIAFLKGMTSKRF-P--SMSVVLCLFAAFFQARRHSEAQDLLSKCPRYVRNHADVL 653 (671)
Q Consensus 593 ~~~g~~~~A~~~~~~m~~~~~-p--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~ 653 (671)
...|++++|+..|++...+.. | ..........++.+.|+.++|..+|+++...... +.+.
T Consensus 182 ~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~ 244 (282)
T 4f3v_A 182 ANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVA 244 (282)
T ss_dssp HHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHH
T ss_pred HHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHH
Confidence 677888888888877765432 3 3345666777778888888888888887765444 4433
No 133
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.04 E-value=0.00011 Score=61.06 Aligned_cols=97 Identities=13% Similarity=-0.006 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 042546 408 DAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKG 487 (671)
Q Consensus 408 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~ 487 (671)
...+..+...+.+.|++++|...|++..+.. +.+...+..+...|...|++++|.+.+++..+.. ..+...+..+...
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 93 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAAA 93 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHHH
Confidence 3456666666777777777777777766543 3355666666666666777777777776666543 2345556666666
Q ss_pred HHhcCCHHHHHHHHHHHHH
Q 042546 488 HCVAGDLDKAADCFQKMVE 506 (671)
Q Consensus 488 ~~~~g~~~~a~~~~~~m~~ 506 (671)
+.+.|++++|.+.|++..+
T Consensus 94 ~~~~~~~~~A~~~~~~~~~ 112 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALD 112 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHH
Confidence 6666666666666666654
No 134
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=97.97 E-value=0.00018 Score=65.15 Aligned_cols=134 Identities=13% Similarity=0.045 Sum_probs=98.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC--C
Q 042546 409 AMLNSVLKALISVGRMGECNKILKAMEEG----GFI-ASSNMKSKIAFRLSSAGKKDEANEFMDHMEAS----GSDV--G 477 (671)
Q Consensus 409 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~~--~ 477 (671)
.++..+...|...|++++|...+++..+. +.. ....++..+...|...|++++|.+.+++..+. +-.+ .
T Consensus 27 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 106 (203)
T 3gw4_A 27 GARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAA 106 (203)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHH
Confidence 35677778889999999999999887651 211 23457788888999999999999999887542 2111 2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 042546 478 DKMWVSLIKGHCVAGDLDKAADCFQKMVEK---EGTS-HAGYAIDLLVNTYCSKNRAIDACKFVHNCVR 542 (671)
Q Consensus 478 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---~g~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 542 (671)
...+..+...+...|++++|...+++..+. .+.. .-..++..+...|...|++++|.+.+++...
T Consensus 107 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 107 SANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 345778888899999999999999887641 1111 1123457778889999999999999887764
No 135
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=97.97 E-value=0.00014 Score=64.37 Aligned_cols=121 Identities=9% Similarity=-0.045 Sum_probs=82.1
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCCH--H
Q 042546 419 ISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKG-HCVAGDL--D 495 (671)
Q Consensus 419 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~-~~~~g~~--~ 495 (671)
...|++++|...+++..+.. +.+...|..+...|...|++++|...|++..+.. +.+...+..+... +...|++ +
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchH
Confidence 34577777887777776654 4566777888888888888888888888876653 2355666666666 6677777 8
Q ss_pred HHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 042546 496 KAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVRE 543 (671)
Q Consensus 496 ~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 543 (671)
+|...+++..+ .. +.+...+..+...|...|++++|...|......
T Consensus 99 ~A~~~~~~al~-~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 99 QTRAMIDKALA-LD-SNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHH-HC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHH-hC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 88888887776 22 224556667777777788888888888777653
No 136
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=97.96 E-value=0.00011 Score=63.08 Aligned_cols=95 Identities=13% Similarity=0.058 Sum_probs=58.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 042546 410 MLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHC 489 (671)
Q Consensus 410 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~ 489 (671)
.+..+-..+.+.|++++|...|++..+.. +.+...|..+..+|.+.|++++|...|++..+.. +-+...|..+-.+|.
T Consensus 38 ~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~~~~ 115 (151)
T 3gyz_A 38 DIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQCQL 115 (151)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHH
Confidence 45555556666666666666666666554 3455666666666666666666666666665543 223455566666666
Q ss_pred hcCCHHHHHHHHHHHHH
Q 042546 490 VAGDLDKAADCFQKMVE 506 (671)
Q Consensus 490 ~~g~~~~a~~~~~~m~~ 506 (671)
+.|++++|.+.|++..+
T Consensus 116 ~lg~~~eA~~~~~~al~ 132 (151)
T 3gyz_A 116 RLKAPLKAKECFELVIQ 132 (151)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 66666666666666655
No 137
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=97.96 E-value=0.00017 Score=61.91 Aligned_cols=103 Identities=9% Similarity=0.026 Sum_probs=75.4
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 042546 336 METCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVL 415 (671)
Q Consensus 336 ~~t~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li 415 (671)
...+..+-..+.+.|++++|...|+...+. .+.+...|..+-
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~--------------------------------------~P~~~~~~~~lg 77 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIY--------------------------------------DFYNVDYIMGLA 77 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------------------------------------CTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------------------------------------CCCCHHHHHHHH
Confidence 446667777778888888888888877642 122344577777
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 042546 416 KALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDK 479 (671)
Q Consensus 416 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~ 479 (671)
.+|.+.|++++|...|++..+.. +.+...|..+..+|.+.|++++|...|++..+. .||..
T Consensus 78 ~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l--~~~~~ 138 (151)
T 3gyz_A 78 AIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQCQLRLKAPLKAKECFELVIQH--SNDEK 138 (151)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHH
T ss_pred HHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCHH
Confidence 78888888888888888887665 445677888888888888888888888888765 35543
No 138
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=97.95 E-value=7.6e-05 Score=63.95 Aligned_cols=96 Identities=9% Similarity=0.024 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Q 042546 444 NMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNT 523 (671)
Q Consensus 444 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~ 523 (671)
..+..+...+.+.|++++|...|++..... +.+...|..+..+|...|++++|.+.|++..+ .. +.+...+..+..+
T Consensus 22 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~-l~-p~~~~~~~~lg~~ 98 (148)
T 2vgx_A 22 EQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAV-MD-IXEPRFPFHAAEC 98 (148)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HS-TTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-cC-CCCchHHHHHHHH
Confidence 344455555666666666666666655443 23455555566666666666666666666554 11 1133445555556
Q ss_pred HHhcCCHHHHHHHHHHHHH
Q 042546 524 YCSKNRAIDACKFVHNCVR 542 (671)
Q Consensus 524 ~~~~g~~~~A~~~~~~m~~ 542 (671)
|...|++++|...|+...+
T Consensus 99 ~~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 99 LLQXGELAEAESGLFLAQE 117 (148)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 6666666666666665554
No 139
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=97.95 E-value=0.00026 Score=58.79 Aligned_cols=120 Identities=6% Similarity=-0.066 Sum_probs=83.4
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHH
Q 042546 440 IASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDL 519 (671)
Q Consensus 440 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~ 519 (671)
+.+...|..+...+.+.|++++|.+.|++..+.. +.+...+..+...+...|++++|.+.+++..+ .. ..+...+..
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~-~~-~~~~~~~~~ 89 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQ-LE-PTFIKGYTR 89 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHH-HC-TTCHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHH-hC-CCchHHHHH
Confidence 3455677778888888888888888888887653 23667777788888888888888888888776 22 235667777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 042546 520 LVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQR 564 (671)
Q Consensus 520 li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g 564 (671)
+..+|.+.|++++|.+.|++..... ..+...+..+...+.+.|
T Consensus 90 la~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 90 KAAALEAMKDYTKAMDVYQKALDLD--SSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--GGGTHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHhC--CCchHHHHHHHHHHHHhc
Confidence 7778888888888888888776531 112344555555554443
No 140
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=97.94 E-value=0.00031 Score=57.94 Aligned_cols=119 Identities=10% Similarity=0.001 Sum_probs=87.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHH
Q 042546 442 SSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLV 521 (671)
Q Consensus 442 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li 521 (671)
+...+..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|.+.+++..+ .. +.+...+..+.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~-~~-~~~~~~~~~~~ 87 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAIC-ID-PAYSKAYGRMG 87 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HC-TTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHh-cC-ccCHHHHHHHH
Confidence 45567777788888888888888888887653 34667788888888888888888888888876 32 23466777777
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 042546 522 NTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRG 565 (671)
Q Consensus 522 ~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~ 565 (671)
..|.+.|++++|...|++.... .+.+...+..+...+.+.|+
T Consensus 88 ~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 88 LALSSLNKHVEAVAYYKKALEL--DPDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHTT
T ss_pred HHHHHhCCHHHHHHHHHHHHhc--CccchHHHHHHHHHHHHHhc
Confidence 8888888888888888887764 12345566666666666554
No 141
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=97.93 E-value=0.0035 Score=61.32 Aligned_cols=225 Identities=10% Similarity=0.033 Sum_probs=156.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 042546 412 NSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAG-KKDEANEFMDHMEASGSDVGDKMWVSLIKGHCV 490 (671)
Q Consensus 412 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~ 490 (671)
+.+-....+.+..++|+++++.+.... +-+..+|+.--..+...| .+++++++++.+.... +.+..+|+.--..+.+
T Consensus 58 ~~~r~~~~~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~ 135 (349)
T 3q7a_A 58 DYFRAIAAKEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDR 135 (349)
T ss_dssp HHHHHHHHTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHH
Confidence 333333445566678999999998775 456677888777777788 5999999999999875 3466778877666666
Q ss_pred c-C-CHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHH--------HHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 042546 491 A-G-DLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAI--------DACKFVHNCVREYDLKPWHTTYEELIKNL 560 (671)
Q Consensus 491 ~-g-~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~--------~A~~~~~~m~~~~~~~p~~~~~~~li~~~ 560 (671)
. + +.++++++++.+.+ .. .-|...|+--.-.+.+.|..+ ++.+.++++.+. -.-|...|+..-..+
T Consensus 136 l~~~~~~~EL~~~~k~L~-~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~--dp~N~SAW~~R~~lL 211 (349)
T 3q7a_A 136 ISPQDPVSEIEYIHGSLL-PD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRV--DGRNNSAWGWRWYLR 211 (349)
T ss_dssp HCCSCCHHHHHHHHHHTS-SC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred hcCCChHHHHHHHHHHHH-hC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHH
Confidence 5 6 88999999999976 22 235666655444444445555 899999998875 344778888887777
Q ss_pred HhcCC-------HHHHHHHHHHHHhCCCCCCHHH---HHHH-HHhcCCh--------------------HHHHHHHHHhh
Q 042546 561 LVQRG-------FKDALSLLCLMKDHGFPPFVDP---FIKY-VSKSGTS--------------------DDAIAFLKGMT 609 (671)
Q Consensus 561 ~~~g~-------~~~A~~l~~~m~~~~~~p~~~t---~~~~-l~~~g~~--------------------~~A~~~~~~m~ 609 (671)
.+.++ ++++++.++++... .|+..+ +..+ +.+.|+- .+...+...+.
T Consensus 212 ~~l~~~~~~~~~~~eELe~~~~aI~~--~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (349)
T 3q7a_A 212 VSRPGAETSSRSLQDELIYILKSIHL--IPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMP 289 (349)
T ss_dssp TTSTTCCCCHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCC
T ss_pred HhccccccchHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHH
Confidence 77776 78899999888764 455433 2333 3444442 33344444444
Q ss_pred hCC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHhchH
Q 042546 610 SKR------FPSMSVVLCLFAAFFQARRHSEAQDLLSKCPR 644 (671)
Q Consensus 610 ~~~------~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 644 (671)
... .++......|++.|...|+.++|.++++.+.+
T Consensus 290 ~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 290 SDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp C-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 332 47888899999999999999999999999864
No 142
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=97.92 E-value=4.6e-05 Score=67.63 Aligned_cols=112 Identities=10% Similarity=0.056 Sum_probs=47.4
Q ss_pred CCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH-H---HHH-HHhcCCh--HH
Q 042546 528 NRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDP-F---IKY-VSKSGTS--DD 600 (671)
Q Consensus 528 g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~t-~---~~~-l~~~g~~--~~ 600 (671)
|++++|...+...... .+.+...|..+...|...|++++|++.+++..+. .|+... + ... +...|++ ++
T Consensus 24 ~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 24 QNPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQL--RGENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp ---CCCCHHHHHHHHH--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred cCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhcCCcchHH
Confidence 4444444444444332 1123334444444444444444444444444432 121111 1 122 2234444 55
Q ss_pred HHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhch
Q 042546 601 AIAFLKGMTSKRFPSMSVVLCLFAAFFQARRHSEAQDLLSKCP 643 (671)
Q Consensus 601 A~~~~~~m~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 643 (671)
|...+++.....+.+...|..+..+|.+.|++++|...+++..
T Consensus 100 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 142 (177)
T 2e2e_A 100 TRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVM 142 (177)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 5555555544444444455555555555555555555555543
No 143
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=97.90 E-value=0.0003 Score=60.13 Aligned_cols=96 Identities=13% Similarity=-0.003 Sum_probs=84.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 042546 409 AMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGH 488 (671)
Q Consensus 409 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~ 488 (671)
..+..+...+.+.|++++|...|+...+.. +.+...|..+..+|.+.|++++|...|++..... +.+...|..+..+|
T Consensus 22 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~ 99 (148)
T 2vgx_A 22 EQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAAECL 99 (148)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHH
Confidence 456677888999999999999999998765 5678899999999999999999999999998764 34567888899999
Q ss_pred HhcCCHHHHHHHHHHHHH
Q 042546 489 CVAGDLDKAADCFQKMVE 506 (671)
Q Consensus 489 ~~~g~~~~a~~~~~~m~~ 506 (671)
...|++++|.+.|+...+
T Consensus 100 ~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 100 LQXGELAEAESGLFLAQE 117 (148)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 999999999999999877
No 144
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=97.88 E-value=0.0006 Score=64.41 Aligned_cols=195 Identities=9% Similarity=-0.030 Sum_probs=137.3
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHH-------HHHHHhcCCHHHHHHHHHHHHHCCCCCC---------------
Q 042546 420 SVGRMGECNKILKAMEEGGFIASSNMKSKI-------AFRLSSAGKKDEANEFMDHMEASGSDVG--------------- 477 (671)
Q Consensus 420 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l-------i~~~~~~g~~~~A~~~~~~m~~~g~~~~--------------- 477 (671)
..++...|.+.|.+..+.. +-....|+.+ ...+.+.++..+++..+..-.+ +.|+
T Consensus 18 ~~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~ 94 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDI 94 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCC
T ss_pred cCCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCccccc
Confidence 6899999999999999875 4566788877 4555555555555555544433 1221
Q ss_pred -------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCC-
Q 042546 478 -------DKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPW- 549 (671)
Q Consensus 478 -------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~- 549 (671)
...+-.....+...|++++|.++|+.+.. ..|+......+...+.+.+++++|...|+..... . .|.
T Consensus 95 ~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~---~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~-~-d~~~ 169 (282)
T 4f3v_A 95 TYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPV---AGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW-P-DKFL 169 (282)
T ss_dssp EEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCC---TTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC-S-CHHH
T ss_pred ccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc-C-Cccc
Confidence 22344566778899999999999998865 2355545555666888999999999999855431 1 121
Q ss_pred -HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH---HHH--HHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHH
Q 042546 550 -HTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFV---DPF--IKYVSKSGTSDDAIAFLKGMTSKRFPSMSVVLCLF 623 (671)
Q Consensus 550 -~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~---~t~--~~~l~~~g~~~~A~~~~~~m~~~~~p~~~~~~~l~ 623 (671)
...+..+-.++.+.|++++|++.|++.......|.. ..+ ..++.+.|+.++|...|+++....+. ...+..|.
T Consensus 170 ~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~ 248 (282)
T 4f3v_A 170 AGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALK 248 (282)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHh
Confidence 236677788899999999999999999854433652 222 45557899999999999999986654 55555553
No 145
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=97.88 E-value=0.0058 Score=59.71 Aligned_cols=174 Identities=8% Similarity=-0.029 Sum_probs=92.8
Q ss_pred HccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCC-ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcccHH
Q 042546 312 GREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERN-MVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMR 390 (671)
Q Consensus 312 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g-~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~ 390 (671)
.+.+..++|+++++.+...+- -+..+|+.--..+...| .+++++++++.+... .|.
T Consensus 65 ~~~e~se~AL~lt~~~L~~nP-~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~--nPK-------------------- 121 (349)
T 3q7a_A 65 AKEEKSERALELTEIIVRMNP-AHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQ--NLK-------------------- 121 (349)
T ss_dssp HTTCCSHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHT--TCC--------------------
T ss_pred HhCCCCHHHHHHHHHHHHhCc-hhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh--CCC--------------------
Confidence 334455677777777776531 14556666656666666 477777777777643 121
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-C-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH--------
Q 042546 391 LFSKVVRVFRENGNVLTDAMLNSVLKALISV-G-RMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKD-------- 460 (671)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g-~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~-------- 460 (671)
+..+|+.--..+.+. + +.++++++++.+.+.. +.|..+|+--.-.+.+.|..+
T Consensus 122 ----------------ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~ 184 (349)
T 3q7a_A 122 ----------------SYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWG 184 (349)
T ss_dssp ----------------CHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHH
T ss_pred ----------------cHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHH
Confidence 112233333333333 3 5566666776666544 455666665444444444444
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-------HHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcC
Q 042546 461 EANEFMDHMEASGSDVGDKMWVSLIKGHCVAGD-------LDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKN 528 (671)
Q Consensus 461 ~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~-------~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g 528 (671)
++++.++++.+.. .-|...|+-....+.+.+. ++++++.+++... . -.-|...|+-+-..+.+.|
T Consensus 185 eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~-~-~P~n~SaW~Ylr~Ll~~~~ 256 (349)
T 3q7a_A 185 SELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIH-L-IPHNVSAWNYLRGFLKHFS 256 (349)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHH-H-CTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHH-h-CCCCHHHHHHHHHHHHhcC
Confidence 6666666666554 2355566665555555554 4566666655554 1 1224444444444444433
No 146
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=97.87 E-value=0.00034 Score=61.01 Aligned_cols=96 Identities=18% Similarity=0.129 Sum_probs=76.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 042546 409 AMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGH 488 (671)
Q Consensus 409 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~ 488 (671)
..+..+...|.+.|++++|...|++..+.. +.+...|..+..+|.+.|++++|+..|++..+.. ..+...|..+...|
T Consensus 12 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 89 (164)
T 3sz7_A 12 DKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGLAR 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 456777778888888888888888887764 4467788888888888888888888888887764 33567788888888
Q ss_pred HhcCCHHHHHHHHHHHHH
Q 042546 489 CVAGDLDKAADCFQKMVE 506 (671)
Q Consensus 489 ~~~g~~~~a~~~~~~m~~ 506 (671)
...|++++|.+.|++..+
T Consensus 90 ~~~g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 90 FDMADYKGAKEAYEKGIE 107 (164)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHH
Confidence 888888888888888876
No 147
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=97.87 E-value=0.00026 Score=68.18 Aligned_cols=189 Identities=8% Similarity=-0.083 Sum_probs=127.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 042546 408 DAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKG 487 (671)
Q Consensus 408 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~ 487 (671)
...+..+...+.+.|++++|...|++..+.. +.+...|..+...|.+.|++++|.+.+++..+.. +.+...+..+..+
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 81 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQC 81 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 4457778888999999999999999998764 4478889999999999999999999999998764 3467788899999
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 042546 488 HCVAGDLDKAADCFQKMVEKEGTSHAG-YAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGF 566 (671)
Q Consensus 488 ~~~~g~~~~a~~~~~~m~~~~g~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~ 566 (671)
|...|++++|...|++..+ .. |+. ..+...+....+ ...+... ..... .....+......+ ..+ ..|+.
T Consensus 82 ~~~~g~~~~A~~~~~~al~-l~--p~~~~~~~~~~~~~~~---~~~~~~~-~~~~~-~~~~~~~~i~~~l-~~l-~~~~~ 151 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAYS-LA--KEQRLNFGDDIPSALR---IAKKKRW-NSIEE-RRIHQESELHSYL-TRL-IAAER 151 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHH-HH--HHTTCCCCSHHHHHHH---HHHHHHH-HHHHH-TCCCCCCHHHHHH-HHH-HHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH-hC--ccchhhHHHHHHHHHH---HHHHHHH-HHHHH-HHHhhhHHHHHHH-HHH-HHHHH
Confidence 9999999999999998876 21 111 011111111111 1111111 12222 1334444443333 333 36888
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHH----HHHhc-CChHHHHHHHHHhhh
Q 042546 567 KDALSLLCLMKDHGFPPFVDPFIK----YVSKS-GTSDDAIAFLKGMTS 610 (671)
Q Consensus 567 ~~A~~l~~~m~~~~~~p~~~t~~~----~l~~~-g~~~~A~~~~~~m~~ 610 (671)
++|++.+++..+ ..|+...+.. .+.+. +.+++|.++|..+.+
T Consensus 152 ~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 152 ERELEECQRNHE--GHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HHHHTTTSGGGT--TTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHhhhc--cccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 999999888775 4677655422 23333 678889999987765
No 148
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=97.86 E-value=0.00021 Score=59.08 Aligned_cols=105 Identities=13% Similarity=0.027 Sum_probs=62.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH----HHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHHH
Q 042546 552 TYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPF----IKYVSKSGTSDDAIAFLKGMTSKRFPSMSVVLCLFAAFF 627 (671)
Q Consensus 552 ~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~t~----~~~l~~~g~~~~A~~~~~~m~~~~~p~~~~~~~l~~~~~ 627 (671)
.|..+-..+.+.|++++|++.|++..+. .|+.... ...+.+.|++++|+..+++..+..+.+...|..+..+|.
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 3444445555666666666666655543 2332211 333446666666666666666655556777777777777
Q ss_pred HcCCHHHHHHHHHhchHhh------hccHHHHHHHHh
Q 042546 628 QARRHSEAQDLLSKCPRYV------RNHADVLNLLYS 658 (671)
Q Consensus 628 ~~g~~~~A~~~~~~m~~~~------~~~~~~~~l~~~ 658 (671)
..|++++|.+.+++..... ...+.+...+..
T Consensus 84 ~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~ 120 (126)
T 3upv_A 84 AVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYK 120 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHH
Confidence 8888888887777766544 444444444433
No 149
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=97.85 E-value=0.00037 Score=69.04 Aligned_cols=128 Identities=14% Similarity=0.002 Sum_probs=80.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 042546 410 MLNSVLKALISVGRMGECNKILKAMEEGGFIAS--------------SNMKSKIAFRLSSAGKKDEANEFMDHMEASGSD 475 (671)
Q Consensus 410 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~--------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 475 (671)
.+..+-..|.+.|++++|...|++..+..-... ...|..+..+|.+.|++++|+..+++..+.. +
T Consensus 149 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p 227 (336)
T 1p5q_A 149 IVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD-S 227 (336)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-C
Confidence 466677778888888888888888776531111 3666667777777777777777777766553 2
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHH-HHHHHHH
Q 042546 476 VGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDA-CKFVHNC 540 (671)
Q Consensus 476 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A-~~~~~~m 540 (671)
.+...|..+..+|...|++++|.+.|++..+ .. +-+...+..+..++.+.|+.++| ...|..|
T Consensus 228 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~-l~-P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~ 291 (336)
T 1p5q_A 228 NNEKGLSRRGEAHLAVNDFELARADFQKVLQ-LY-PNNKAAKTQLAVCQQRIRRQLAREKKLYANM 291 (336)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HC-SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-HC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666666667777777777777776665 21 12344555666666666666665 3344444
No 150
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=97.82 E-value=0.00052 Score=56.60 Aligned_cols=95 Identities=9% Similarity=-0.059 Sum_probs=63.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 042546 410 MLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHC 489 (671)
Q Consensus 410 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~ 489 (671)
.+..+...+.+.|++++|...|++..+.. +.+...|..+..+|.+.|++++|...+++..+.. +.+...|..+..++.
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHH
Confidence 35555666677777777777777766554 3456667777777777777777777777766653 234556666667777
Q ss_pred hcCCHHHHHHHHHHHHH
Q 042546 490 VAGDLDKAADCFQKMVE 506 (671)
Q Consensus 490 ~~g~~~~a~~~~~~m~~ 506 (671)
..|++++|.+.|++..+
T Consensus 84 ~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 84 AVKEYASALETLDAART 100 (126)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHH
Confidence 77777777777776655
No 151
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=97.82 E-value=0.00024 Score=57.47 Aligned_cols=103 Identities=11% Similarity=-0.052 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH-H---HH
Q 042546 514 GYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVD-P---FI 589 (671)
Q Consensus 514 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~-t---~~ 589 (671)
...+..+...+...|++++|...|+..... .+.+...+..+...+...|++++|.+.+++..+. .|+.. . +.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a 79 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL--KPDWGKGYSRKA 79 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHh--CcccHHHHHHHH
Confidence 344555555666666666666666666543 1224455555555566666666666666655542 22211 1 12
Q ss_pred HHHHhcCChHHHHHHHHHhhhCCCCCHHHHH
Q 042546 590 KYVSKSGTSDDAIAFLKGMTSKRFPSMSVVL 620 (671)
Q Consensus 590 ~~l~~~g~~~~A~~~~~~m~~~~~p~~~~~~ 620 (671)
..+...|++++|...++...+..+.+...+.
T Consensus 80 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 110 (118)
T 1elw_A 80 AALEFLNRFEEAKRTYEEGLKHEANNPQLKE 110 (118)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTCTTCHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHcCCCCHHHHH
Confidence 3334455555555555555444433433333
No 152
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=97.82 E-value=0.00094 Score=53.75 Aligned_cols=95 Identities=11% Similarity=0.001 Sum_probs=54.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 042546 410 MLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHC 489 (671)
Q Consensus 410 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~ 489 (671)
.+..+...+...|++++|...|++..+.. +.+...+..+...|.+.|++++|...+++..+.. +.+...+..+...+.
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence 34555555666666666666666665543 2345555666666666666666666666655442 223455555555566
Q ss_pred hcCCHHHHHHHHHHHHH
Q 042546 490 VAGDLDKAADCFQKMVE 506 (671)
Q Consensus 490 ~~g~~~~a~~~~~~m~~ 506 (671)
..|++++|.+.+++..+
T Consensus 84 ~~~~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLK 100 (118)
T ss_dssp HTTCHHHHHHHHHHHHT
T ss_pred HHhhHHHHHHHHHHHHH
Confidence 66666666666655544
No 153
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.80 E-value=0.00053 Score=58.18 Aligned_cols=111 Identities=12% Similarity=-0.060 Sum_probs=66.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH----HHH---HHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHH
Q 042546 549 WHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFV----DPF---IKYVSKSGTSDDAIAFLKGMTSKRFPSMSVVLC 621 (671)
Q Consensus 549 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~----~t~---~~~l~~~g~~~~A~~~~~~m~~~~~p~~~~~~~ 621 (671)
+...+..+...+...|++++|++.|++..+. .|+. ..+ ...+...|++++|...++......+.+...|..
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 104 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYR 104 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHH
Confidence 3445555555555666666666666655542 3432 111 233445666666666666666655556667777
Q ss_pred HHHHHHHcCCHHHHHHHHHhchHhhhccHHHHHHHHhhhc
Q 042546 622 LFAAFFQARRHSEAQDLLSKCPRYVRNHADVLNLLYSKKS 661 (671)
Q Consensus 622 l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~l~~~m~~ 661 (671)
+..+|.+.|++++|.+.+++.....+..+.+...+..+.+
T Consensus 105 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 144 (148)
T 2dba_A 105 RSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISG 144 (148)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHh
Confidence 7777777777777777777766655566666666665543
No 154
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=97.80 E-value=0.00045 Score=58.51 Aligned_cols=95 Identities=16% Similarity=0.046 Sum_probs=71.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 042546 410 MLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHC 489 (671)
Q Consensus 410 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~ 489 (671)
.+..+...+.+.|++++|...|+...+.. +.+...|..+..+|.+.|++++|...|++..... +.+...|..+..+|.
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHH
Confidence 34555667778888888888888877654 4567777788888888888888888888877664 335566777777888
Q ss_pred hcCCHHHHHHHHHHHHH
Q 042546 490 VAGDLDKAADCFQKMVE 506 (671)
Q Consensus 490 ~~g~~~~a~~~~~~m~~ 506 (671)
..|++++|.+.|+...+
T Consensus 98 ~~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARA 114 (142)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 88888888888887765
No 155
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=97.80 E-value=0.00032 Score=56.05 Aligned_cols=95 Identities=9% Similarity=-0.045 Sum_probs=52.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHH
Q 042546 410 MLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDV--GDKMWVSLIKG 487 (671)
Q Consensus 410 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~--~~~~~~~li~~ 487 (671)
.+..+...+.+.|++++|...|++..+.. +.+...|..+...+...|++++|.+.|++..+.. .. +...+..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 8 EYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKADA 85 (112)
T ss_dssp GGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHHHH
Confidence 34445555566666666666666655443 2344555555555666666666666666555442 12 34455555555
Q ss_pred HHhc-CCHHHHHHHHHHHHH
Q 042546 488 HCVA-GDLDKAADCFQKMVE 506 (671)
Q Consensus 488 ~~~~-g~~~~a~~~~~~m~~ 506 (671)
+.+. |++++|.+.++...+
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~ 105 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKL 105 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGG
T ss_pred HHHHhCCHHHHHHHHHHHhh
Confidence 5555 555555555555544
No 156
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=97.79 E-value=0.00058 Score=67.64 Aligned_cols=132 Identities=12% Similarity=-0.068 Sum_probs=100.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 042546 442 SSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVG--------------DKMWVSLIKGHCVAGDLDKAADCFQKMVEK 507 (671)
Q Consensus 442 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~--------------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 507 (671)
+...|..+...|.+.|++++|...|++..+...... ...|..+..+|.+.|++++|.+.+++..+
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~- 224 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALE- 224 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-
Confidence 456788888999999999999999999887642221 47788888888888899999888888877
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH-HHHHHHHH
Q 042546 508 EGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDA-LSLLCLMK 577 (671)
Q Consensus 508 ~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A-~~l~~~m~ 577 (671)
.. +.+...|..+..+|...|++++|...|++..+. .+-+...+..+...+.+.|+.++| .++++.|.
T Consensus 225 ~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 225 LD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQL--YPNNKAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp HC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 235677788888888888888888888888763 223456777777788888888877 44666664
No 157
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=97.78 E-value=0.00025 Score=58.65 Aligned_cols=96 Identities=9% Similarity=0.039 Sum_probs=58.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCC----HHHHHH
Q 042546 410 MLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGS--DVG----DKMWVS 483 (671)
Q Consensus 410 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~~~----~~~~~~ 483 (671)
.+..+...+...|++++|...|++..+.. +.+...+..+...|...|++++|...+++..+... .++ ..+|..
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 35556666667777777777777766543 34556666666666677777777777666654321 111 445555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Q 042546 484 LIKGHCVAGDLDKAADCFQKMVE 506 (671)
Q Consensus 484 li~~~~~~g~~~~a~~~~~~m~~ 506 (671)
+...+.+.|++++|.+.|++..+
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHH
Confidence 55666666666666666666555
No 158
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=97.77 E-value=0.00022 Score=60.44 Aligned_cols=87 Identities=9% Similarity=-0.046 Sum_probs=44.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH----HHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCC
Q 042546 556 LIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPF----IKYVSKSGTSDDAIAFLKGMTSKRFPSMSVVLCLFAAFFQARR 631 (671)
Q Consensus 556 li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~t~----~~~l~~~g~~~~A~~~~~~m~~~~~p~~~~~~~l~~~~~~~g~ 631 (671)
+...+.+.|++++|++.|++.... .|+...+ ..++.+.|++++|...|+......+.+...|..+..+|...|+
T Consensus 24 ~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~ 101 (142)
T 2xcb_A 24 LGFNQYQAGKWDDAQKIFQALCML--DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGD 101 (142)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCC
Confidence 334444555555555555554432 2322211 2233455555555555555555444455555566666666666
Q ss_pred HHHHHHHHHhchH
Q 042546 632 HSEAQDLLSKCPR 644 (671)
Q Consensus 632 ~~~A~~~~~~m~~ 644 (671)
+++|.+.+++...
T Consensus 102 ~~~A~~~~~~al~ 114 (142)
T 2xcb_A 102 LDGAESGFYSARA 114 (142)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 6666666665443
No 159
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=97.77 E-value=0.0007 Score=56.64 Aligned_cols=97 Identities=10% Similarity=-0.065 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 042546 408 DAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKG 487 (671)
Q Consensus 408 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~ 487 (671)
...+..+...+.+.|++++|...|+...+.. +.+...|..+...|...|++++|...+++..+.. +.+...|..+...
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 86 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQC 86 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHHHH
Confidence 3445555556666666666666666655443 2345555555666666666666666666555443 2234455555555
Q ss_pred HHhcCCHHHHHHHHHHHHH
Q 042546 488 HCVAGDLDKAADCFQKMVE 506 (671)
Q Consensus 488 ~~~~g~~~~a~~~~~~m~~ 506 (671)
|...|++++|...|++..+
T Consensus 87 ~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHH
Confidence 5555666666555555543
No 160
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=97.72 E-value=0.00073 Score=55.93 Aligned_cols=95 Identities=13% Similarity=0.036 Sum_probs=58.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCC----HHHHHHH
Q 042546 411 LNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGS--DVG----DKMWVSL 484 (671)
Q Consensus 411 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~~~----~~~~~~l 484 (671)
+..+-..+.+.|++++|+..|++..+.. +.+...|+.+..+|.+.|++++|++.+++..+... .++ ..+|..+
T Consensus 11 ~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l 89 (127)
T 4gcn_A 11 EKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRA 89 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHH
Confidence 5556666777777777777777766554 34566677777777777777777777776654211 111 1244455
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH
Q 042546 485 IKGHCVAGDLDKAADCFQKMVE 506 (671)
Q Consensus 485 i~~~~~~g~~~~a~~~~~~m~~ 506 (671)
-..+...|++++|.+.|++..+
T Consensus 90 g~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 90 GNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHh
Confidence 5555566666666666665544
No 161
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=97.71 E-value=0.00085 Score=58.38 Aligned_cols=105 Identities=9% Similarity=-0.092 Sum_probs=81.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHH
Q 042546 442 SSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLV 521 (671)
Q Consensus 442 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li 521 (671)
+...|..+...|.+.|++++|.+.|++..+.. .-+...|..+...|.+.|++++|...|++..+ .. .-+...|..+.
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~-~~-p~~~~~~~~lg 86 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATV-VD-PKYSKAWSRLG 86 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HC-TTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHH-hC-CCCHHHHHHHH
Confidence 45567778888888999999999999887764 33677788888888899999999999988877 22 22467788888
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhCCCCCC
Q 042546 522 NTYCSKNRAIDACKFVHNCVREYDLKPW 549 (671)
Q Consensus 522 ~~~~~~g~~~~A~~~~~~m~~~~~~~p~ 549 (671)
.+|.+.|++++|...|++..+...-.++
T Consensus 87 ~~~~~~g~~~~A~~~~~~al~~~p~~~~ 114 (164)
T 3sz7_A 87 LARFDMADYKGAKEAYEKGIEAEGNGGS 114 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHSSSCC
T ss_pred HHHHHccCHHHHHHHHHHHHHhCCCchH
Confidence 8888889999999888888764333333
No 162
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.69 E-value=0.016 Score=59.43 Aligned_cols=96 Identities=5% Similarity=-0.035 Sum_probs=48.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC--CC--CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CC-CC-C--H
Q 042546 410 MLNSVLKALISVGRMGECNKILKAMEEG--GF--IA-SSNMKSKIAFRLSSAGKKDEANEFMDHMEAS--GS-DV-G--D 478 (671)
Q Consensus 410 ~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~--~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~-~~-~--~ 478 (671)
++..+...|...|++++|..++++.... +. .+ ...+|..++..|...|++++|..++++.... .+ .| . .
T Consensus 137 ~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 216 (434)
T 4b4t_Q 137 LSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVA 216 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHH
Confidence 4555666666666666666666655432 11 11 1235555566666666666666666554321 11 11 1 1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 042546 479 KMWVSLIKGHCVAGDLDKAADCFQKMV 505 (671)
Q Consensus 479 ~~~~~li~~~~~~g~~~~a~~~~~~m~ 505 (671)
..+..+...+...+++++|...|.+..
T Consensus 217 ~~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 217 ELDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp HHHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 234444445555566666665555444
No 163
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=97.69 E-value=0.00067 Score=56.76 Aligned_cols=93 Identities=16% Similarity=0.094 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH----HHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHH
Q 042546 550 HTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPF----IKYVSKSGTSDDAIAFLKGMTSKRFPSMSVVLCLFAA 625 (671)
Q Consensus 550 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~t~----~~~l~~~g~~~~A~~~~~~m~~~~~p~~~~~~~l~~~ 625 (671)
...|..+...+...|++++|++.|++..+. .|+.... ...+...|++++|...++......+.+...|..+..+
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 86 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 86 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhh--CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHH
Confidence 334444444444455555555555444432 2222111 2233345555555555555555444455566666666
Q ss_pred HHHcCCHHHHHHHHHhchH
Q 042546 626 FFQARRHSEAQDLLSKCPR 644 (671)
Q Consensus 626 ~~~~g~~~~A~~~~~~m~~ 644 (671)
|.+.|++++|.+.+++...
T Consensus 87 ~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHH
Confidence 6666666666666665443
No 164
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=97.69 E-value=0.00011 Score=66.52 Aligned_cols=148 Identities=10% Similarity=-0.138 Sum_probs=73.7
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC--------------HHHHH
Q 042546 418 LISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSD-VG--------------DKMWV 482 (671)
Q Consensus 418 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-~~--------------~~~~~ 482 (671)
....|+++++.+.++.-.... ......+..+...+.+.|++++|...|++..+.... |+ ...|.
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (198)
T 2fbn_A 14 RENLYFQGAKKSIYDYTDEEK-VQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNL 92 (198)
T ss_dssp --------CCCSGGGCCHHHH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHH
T ss_pred hhhhhhccccCchhhCCHHHH-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHH
Confidence 344455555555554222110 122345556666677777777777777777654211 10 14555
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 042546 483 SLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLV 562 (671)
Q Consensus 483 ~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~ 562 (671)
.+..+|.+.|++++|...+++..+ . -+.+...+..+..+|...|++++|.+.|+..... .+-+...+..+...+..
T Consensus 93 ~la~~~~~~~~~~~A~~~~~~al~-~-~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~ 168 (198)
T 2fbn_A 93 NLATCYNKNKDYPKAIDHASKVLK-I-DKNNVKALYKLGVANMYFGFLEEAKENLYKAASL--NPNNLDIRNSYELCVNK 168 (198)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH-H-STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHH-h-CcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHH
Confidence 566666666666666666666655 2 1224455555666666666666666666666542 11233444445444444
Q ss_pred cCCHHHHH
Q 042546 563 QRGFKDAL 570 (671)
Q Consensus 563 ~g~~~~A~ 570 (671)
.++.+++.
T Consensus 169 ~~~~~~~~ 176 (198)
T 2fbn_A 169 LKEARKKD 176 (198)
T ss_dssp HHHHHC--
T ss_pred HHHHHHHH
Confidence 44444444
No 165
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.68 E-value=0.0013 Score=67.71 Aligned_cols=161 Identities=17% Similarity=0.111 Sum_probs=76.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCC----------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCH
Q 042546 416 KALISVGRMGECNKILKAMEEGGFIAS----------------SNMKSKIAFRLSSAGKKDEANEFMDHMEASG-SDVGD 478 (671)
Q Consensus 416 ~~~~~~g~~~~A~~~~~~m~~~g~~~~----------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~~~~ 478 (671)
..+.+.|++++|.+.|....+..-... ...+..+...|.+.|++++|.+.+..+...- ..++.
T Consensus 12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~ 91 (434)
T 4b4t_Q 12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKS 91 (434)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccch
Confidence 455677788888888777776432111 0134556666666666666666666554311 01111
Q ss_pred H----HHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC---C
Q 042546 479 K----MWVSLIKGHCVAGDLDKAADCFQKMVEK---EGTSHA-GYAIDLLVNTYCSKNRAIDACKFVHNCVREYDL---K 547 (671)
Q Consensus 479 ~----~~~~li~~~~~~g~~~~a~~~~~~m~~~---~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~---~ 547 (671)
. +.+.+-..+...|+.++|.+++...... .+..+. ..++..+...|...|++++|..++++......- .
T Consensus 92 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~ 171 (434)
T 4b4t_Q 92 KTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDK 171 (434)
T ss_dssp HHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCS
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccc
Confidence 1 1111222223345555555555554320 111111 234444555555555555555555554432111 1
Q ss_pred CC-HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 042546 548 PW-HTTYEELIKNLLVQRGFKDALSLLCLM 576 (671)
Q Consensus 548 p~-~~~~~~li~~~~~~g~~~~A~~l~~~m 576 (671)
|. ...|..++..|...|++++|..++++.
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 201 (434)
T 4b4t_Q 172 PSLVDVHLLESKVYHKLRNLAKSKASLTAA 201 (434)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence 11 124444455555555555555555443
No 166
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=97.68 E-value=0.00063 Score=54.25 Aligned_cols=97 Identities=10% Similarity=0.057 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--CHHHHHHH
Q 042546 443 SNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSH--AGYAIDLL 520 (671)
Q Consensus 443 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p--~~~~~~~l 520 (671)
...|..+...+.+.|++++|...|++..+.. ..+...|..+...+...|++++|.+.+++..+ .. .. +...+..+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~-~~-~~~~~~~~~~~l 82 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVIN-VI-EDEYNKDVWAAK 82 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-TS-CCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHH-hC-cccchHHHHHHH
Confidence 3445556666667777777777777666543 23455666666666667777777777766665 21 11 35556666
Q ss_pred HHHHHhc-CCHHHHHHHHHHHHH
Q 042546 521 VNTYCSK-NRAIDACKFVHNCVR 542 (671)
Q Consensus 521 i~~~~~~-g~~~~A~~~~~~m~~ 542 (671)
..+|.+. |++++|.+.+.....
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~ 105 (112)
T 2kck_A 83 ADALRYIEGKEVEAEIAEARAKL 105 (112)
T ss_dssp HHHHTTCSSCSHHHHHHHHHHGG
T ss_pred HHHHHHHhCCHHHHHHHHHHHhh
Confidence 6666666 666666666666654
No 167
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=97.67 E-value=0.00046 Score=56.95 Aligned_cols=108 Identities=15% Similarity=0.130 Sum_probs=72.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--CCC----HHHH
Q 042546 444 NMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGT--SHA----GYAI 517 (671)
Q Consensus 444 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~--~p~----~~~~ 517 (671)
..|..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|...+++..+ ... .++ ..++
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~~~~ 82 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIE-VGRENREDYRQIAKAY 82 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-HHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHh-hccccchhHHHHHHHH
Confidence 456667777778888888888888877653 34566777777777888888888888877765 211 122 5566
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 042546 518 DLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEEL 556 (671)
Q Consensus 518 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~l 556 (671)
..+..+|.+.|++++|.+.|+..... .|+...+..+
T Consensus 83 ~~la~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~l 118 (131)
T 1elr_A 83 ARIGNSYFKEEKYKDAIHFYNKSLAE---HRTPDVLKKC 118 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH---CCCHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHh---CCCHHHHHHH
Confidence 66777777777777777777777653 3454444433
No 168
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.67 E-value=0.00051 Score=59.16 Aligned_cols=62 Identities=11% Similarity=-0.106 Sum_probs=31.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 042546 516 AIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPW----HTTYEELIKNLLVQRGFKDALSLLCLMK 577 (671)
Q Consensus 516 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~l~~~m~ 577 (671)
++..+...|...|++++|.+.+++......-..+ ...+..+...|...|++++|.+.+++..
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 156 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 156 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 3444455555556666666555554321100001 2244455555666666666666666544
No 169
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=97.58 E-value=0.0019 Score=53.34 Aligned_cols=98 Identities=11% Similarity=0.047 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCC----HHHHH
Q 042546 444 NMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKE-GTSHA----GYAID 518 (671)
Q Consensus 444 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-g~~p~----~~~~~ 518 (671)
..+..+-..+.+.|++++|++.|++..+.. +-+...|..+-.+|.+.|++++|.+.+++..+.. ...++ ..+|.
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 345566677777888888888887776653 2356667777777777788888877777765410 01111 12455
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHH
Q 042546 519 LLVNTYCSKNRAIDACKFVHNCVR 542 (671)
Q Consensus 519 ~li~~~~~~g~~~~A~~~~~~m~~ 542 (671)
.+-.+|...|++++|.+.|++...
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHh
Confidence 555666666777777777766554
No 170
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.57 E-value=0.003 Score=53.34 Aligned_cols=97 Identities=15% Similarity=0.019 Sum_probs=63.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 042546 407 TDAMLNSVLKALISVGRMGECNKILKAMEEGGFIAS----SNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWV 482 (671)
Q Consensus 407 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~ 482 (671)
+...+..+...+...|++++|...|++..+.. |+ ...|..+...|.+.|++++|.+.+++..+.. +.+...|.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 103 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLD--ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALY 103 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc--ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHH
Confidence 44556666677777777777777777776543 44 4566666666777777777777777666542 22455566
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHH
Q 042546 483 SLIKGHCVAGDLDKAADCFQKMVE 506 (671)
Q Consensus 483 ~li~~~~~~g~~~~a~~~~~~m~~ 506 (671)
.+...+...|++++|.+.|++..+
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Confidence 666666667777777777766655
No 171
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=97.57 E-value=0.056 Score=52.47 Aligned_cols=191 Identities=7% Similarity=-0.069 Sum_probs=111.1
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-HHHHHHH
Q 042546 424 MGECNKILKAMEEGGFIASSNMKSKIAFRLSSAG--KKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGD-LDKAADC 500 (671)
Q Consensus 424 ~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~-~~~a~~~ 500 (671)
+++++.+++.+.... +.+..+|+.-.-.+.+.| .+++++.+++.+.+.. +.|...|+--.-.+.+.|. .+++++.
T Consensus 90 l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~ 167 (331)
T 3dss_A 90 VKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAF 167 (331)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHH
Confidence 567777777777654 557777777666666767 3788888888887765 4466777776666667776 5788888
Q ss_pred HHHHHHcCCCCCCHHHHHHHHHHHHhc--------------CCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc---
Q 042546 501 FQKMVEKEGTSHAGYAIDLLVNTYCSK--------------NRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQ--- 563 (671)
Q Consensus 501 ~~~m~~~~g~~p~~~~~~~li~~~~~~--------------g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~--- 563 (671)
++.+.+ .. .-|...|+-....+.+. +.++++.+.+...... -+-|...|+-+-..+.+.
T Consensus 168 ~~~~I~-~~-p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~--~P~d~SaW~Y~r~ll~~~~~~ 243 (331)
T 3dss_A 168 TDSLIT-RN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT--DPNDQSAWFYHRWLLGAGSGR 243 (331)
T ss_dssp HHHHHH-HC-SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHSSSCG
T ss_pred HHHHHH-HC-CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccCc
Confidence 888776 33 23555555544443333 3466777777776653 233555665444334333
Q ss_pred --------CCHHHHHHHHHHHHhCCCCCCHHH-H------HHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHH
Q 042546 564 --------RGFKDALSLLCLMKDHGFPPFVDP-F------IKYVSKSGTSDDAIAFLKGMTSKRFPSMSVVLCL 622 (671)
Q Consensus 564 --------g~~~~A~~l~~~m~~~~~~p~~~t-~------~~~l~~~g~~~~A~~~~~~m~~~~~p~~~~~~~l 622 (671)
+.++++++.++++.+ ..||..- + ...+...|..+++...+.++++.+|....-|.-+
T Consensus 244 ~~~~~~~~~~l~~el~~~~elle--~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~ 315 (331)
T 3dss_A 244 CELSVEKSTVLQSELESCKELQE--LEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDL 315 (331)
T ss_dssp GGCCHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHHHHHh--hCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHH
Confidence 335566666666654 2444311 1 0111123445555555555555444444444443
No 172
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=97.55 E-value=0.00084 Score=54.96 Aligned_cols=94 Identities=9% Similarity=0.039 Sum_probs=66.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 042546 411 LNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCV 490 (671)
Q Consensus 411 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~ 490 (671)
+..+...+.+.|++++|...|++..+.. +.+...|..+..++.+.|++++|+..|++..+.. +-+...+..+...+.+
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTN 97 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 3445556677788888888888777654 3466777777777777888888888887776653 2245667777777777
Q ss_pred cCCHHHHHHHHHHHHH
Q 042546 491 AGDLDKAADCFQKMVE 506 (671)
Q Consensus 491 ~g~~~~a~~~~~~m~~ 506 (671)
.|++++|...+++..+
T Consensus 98 ~g~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 98 EHNANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHHHC
T ss_pred cCCHHHHHHHHHHHHH
Confidence 7777777777777654
No 173
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.55 E-value=0.0008 Score=57.86 Aligned_cols=133 Identities=14% Similarity=0.040 Sum_probs=100.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HH
Q 042546 410 MLNSVLKALISVGRMGECNKILKAMEEGGF-IAS----SNMKSKIAFRLSSAGKKDEANEFMDHMEASGS-DVG----DK 479 (671)
Q Consensus 410 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~~~----~~ 479 (671)
++..+...|...|++++|...+++..+..- .++ ..++..+...|...|++++|.+.+++..+... .++ ..
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 477788889999999999999988765311 112 24778888999999999999999998764211 112 45
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 042546 480 MWVSLIKGHCVAGDLDKAADCFQKMVEK---EGTS-HAGYAIDLLVNTYCSKNRAIDACKFVHNCVR 542 (671)
Q Consensus 480 ~~~~li~~~~~~g~~~~a~~~~~~m~~~---~g~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 542 (671)
.+..+...+...|++++|.+.+++..+. .+.. ....++..+...|...|+.++|.+.+++..+
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 6777888899999999999999987651 1111 1234577788889999999999999988765
No 174
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=97.54 E-value=0.0016 Score=58.70 Aligned_cols=128 Identities=9% Similarity=-0.085 Sum_probs=96.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 042546 410 MLNSVLKALISVGRMGECNKILKAMEEGGFIAS----------------SNMKSKIAFRLSSAGKKDEANEFMDHMEASG 473 (671)
Q Consensus 410 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~----------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 473 (671)
.+..+...+.+.|++++|...|++..+..- .+ ...|..+..+|.+.|++++|...+++..+..
T Consensus 40 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 118 (198)
T 2fbn_A 40 DIKEEGNEFFKKNEINEAIVKYKEALDFFI-HTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID 118 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTT-TCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHh-cccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 366677788999999999999999987431 12 2788889999999999999999999998764
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHH-HHHHHHH
Q 042546 474 SDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDAC-KFVHNCV 541 (671)
Q Consensus 474 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~-~~~~~m~ 541 (671)
+.+...+..+..+|...|++++|.+.|++..+ .. +-+...+..+..++...++.+++. ..|..+.
T Consensus 119 -p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~-~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f 184 (198)
T 2fbn_A 119 -KNNVKALYKLGVANMYFGFLEEAKENLYKAAS-LN-PNNLDIRNSYELCVNKLKEARKKDKLTFGGMF 184 (198)
T ss_dssp -TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-HS-TTCHHHHHHHHHHHHHHHHHHC----------
T ss_pred -cccHHHHHHHHHHHHHcccHHHHHHHHHHHHH-HC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44678899999999999999999999999987 22 225566777777777777776666 4444443
No 175
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.54 E-value=0.0014 Score=53.97 Aligned_cols=52 Identities=17% Similarity=0.114 Sum_probs=24.6
Q ss_pred hcCChHHHHHHHHHhhhCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHhchHh
Q 042546 594 KSGTSDDAIAFLKGMTSKRFPS---MSVVLCLFAAFFQARRHSEAQDLLSKCPRY 645 (671)
Q Consensus 594 ~~g~~~~A~~~~~~m~~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 645 (671)
..|++++|...++......+.+ ...+..+..+|.+.|++++|.+.+++....
T Consensus 51 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 51 ATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4444444444444444433222 344444555555555555555555554443
No 176
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.51 E-value=0.00024 Score=57.87 Aligned_cols=85 Identities=8% Similarity=0.031 Sum_probs=51.0
Q ss_pred cCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 042546 421 VGRMGECNKILKAMEEGG--FIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAA 498 (671)
Q Consensus 421 ~g~~~~A~~~~~~m~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~ 498 (671)
.|++++|...|++..+.+ -+.+...|..+...|.+.|++++|.+.|++..+.. +-+...+..+..++.+.|++++|.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHHH
Confidence 466667777777766543 12234556666666777777777777777766553 224555666666667777777777
Q ss_pred HHHHHHHH
Q 042546 499 DCFQKMVE 506 (671)
Q Consensus 499 ~~~~~m~~ 506 (671)
+.+++..+
T Consensus 82 ~~~~~al~ 89 (117)
T 3k9i_A 82 ELLLKIIA 89 (117)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77766655
No 177
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.42 E-value=0.00071 Score=70.57 Aligned_cols=122 Identities=7% Similarity=-0.104 Sum_probs=94.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 042546 415 LKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDL 494 (671)
Q Consensus 415 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 494 (671)
...+.+.|++++|.+.|++..+.. +.+..+|..+..+|.+.|++++|.+.+++..+.. +.+...|..+..+|...|++
T Consensus 13 g~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~ 90 (477)
T 1wao_1 13 ANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKF 90 (477)
T ss_dssp SSSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCH
Confidence 344577899999999999998764 4568899999999999999999999999999874 34678899999999999999
Q ss_pred HHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 042546 495 DKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVH 538 (671)
Q Consensus 495 ~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 538 (671)
++|.+.|++..+...-.++....-..+..+.+.|++++|.+.++
T Consensus 91 ~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 91 RAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 99999999998733333343333333334888899999999988
No 178
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=97.42 E-value=0.00066 Score=55.60 Aligned_cols=87 Identities=13% Similarity=-0.028 Sum_probs=55.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH----HHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcC
Q 042546 555 ELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPF----IKYVSKSGTSDDAIAFLKGMTSKRFPSMSVVLCLFAAFFQAR 630 (671)
Q Consensus 555 ~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~t~----~~~l~~~g~~~~A~~~~~~m~~~~~p~~~~~~~l~~~~~~~g 630 (671)
.+...+.+.|++++|+..+++..+. .|+.... ..++...|++++|+..|++.....+.+...|..+..+|.+.|
T Consensus 22 ~~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g 99 (121)
T 1hxi_A 22 EEGLSMLKLANLAEAALAFEAVCQK--EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEH 99 (121)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 3444566667777777777666653 3433221 333456677777777777777666666777777777777777
Q ss_pred CHHHHHHHHHhch
Q 042546 631 RHSEAQDLLSKCP 643 (671)
Q Consensus 631 ~~~~A~~~~~~m~ 643 (671)
++++|.+.+++..
T Consensus 100 ~~~~A~~~~~~al 112 (121)
T 1hxi_A 100 NANAALASLRAWL 112 (121)
T ss_dssp HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 7777777777654
No 179
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=97.35 E-value=0.082 Score=51.31 Aligned_cols=184 Identities=8% Similarity=-0.069 Sum_probs=113.4
Q ss_pred ChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHccCC----------hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhC
Q 042546 280 EPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDC----------IDRFWKVLDEMRSKGYEMEMETCVKVLGRFSER 349 (671)
Q Consensus 280 ~~~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~ 349 (671)
..++|++.++.+.... +.+..+||.--..+...+. +++++.+++.+.... +-+..+|+.--..+.+.
T Consensus 45 ~s~eaL~~t~~~L~~n--P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l 121 (331)
T 3dss_A 45 LDESVLELTSQILGAN--PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRL 121 (331)
T ss_dssp CSHHHHHHHHHHHTTC--TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHC--chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHhcc
Confidence 4457899999988532 4556677765444433333 577888888887763 23778888777777777
Q ss_pred C--ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC-HHH
Q 042546 350 N--MVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGR-MGE 426 (671)
Q Consensus 350 g--~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~ 426 (671)
+ .+++++++++.+.+. .+.|...|+----.+...|. +++
T Consensus 122 ~~~~~~~EL~~~~k~l~~--------------------------------------dprNy~AW~~R~~vl~~l~~~~~e 163 (331)
T 3dss_A 122 PEPNWARELELCARFLEA--------------------------------------DERNFHCWDYRRFVAAQAAVAPAE 163 (331)
T ss_dssp SSCCHHHHHHHHHHHHHH--------------------------------------CTTCHHHHHHHHHHHHHTTCCHHH
T ss_pred CcccHHHHHHHHHHHHHh--------------------------------------CCCCHHHHHHHHHHHHHhCcCHHH
Confidence 7 478888888888753 12222334444444455565 477
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhc--------------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-
Q 042546 427 CNKILKAMEEGGFIASSNMKSKIAFRLSSA--------------GKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVA- 491 (671)
Q Consensus 427 A~~~~~~m~~~g~~~~~~~~~~li~~~~~~--------------g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~- 491 (671)
+++.++.+.+.. +.|...|+-....+.+. +.++++++.+....... +-|...|+-+-..+.+.
T Consensus 164 el~~~~~~I~~~-p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~~ 241 (331)
T 3dss_A 164 ELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAGS 241 (331)
T ss_dssp HHHHHHHHHHHC-SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSSS
T ss_pred HHHHHHHHHHHC-CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcc
Confidence 888888887765 46777777665555544 34677777777776553 33556666544444433
Q ss_pred ----------CCHHHHHHHHHHHHH
Q 042546 492 ----------GDLDKAADCFQKMVE 506 (671)
Q Consensus 492 ----------g~~~~a~~~~~~m~~ 506 (671)
+.++++.+.++++.+
T Consensus 242 ~~~~~~~~~~~~l~~el~~~~elle 266 (331)
T 3dss_A 242 GRCELSVEKSTVLQSELESCKELQE 266 (331)
T ss_dssp CGGGCCHHHHHHHHHHHHHHHHHHH
T ss_pred CccccchHHHHHHHHHHHHHHHHHh
Confidence 234555555555544
No 180
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.33 E-value=0.0087 Score=49.05 Aligned_cols=90 Identities=10% Similarity=0.006 Sum_probs=56.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHH
Q 042546 414 VLKALISVGRMGECNKILKAMEEGGFIASS---NMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVG----DKMWVSLIK 486 (671)
Q Consensus 414 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~----~~~~~~li~ 486 (671)
+...+.+.|++++|...|+...+.. +.+. ..+..+...|.+.|++++|...|++..+.. |+ ...+..+..
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~la~ 84 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELY-PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY--PTHDKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTSTTHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC--CCCcccHHHHHHHHH
Confidence 4455666777777777777766543 1222 355666666777777777777777766543 22 445555666
Q ss_pred HHHhcCCHHHHHHHHHHHHH
Q 042546 487 GHCVAGDLDKAADCFQKMVE 506 (671)
Q Consensus 487 ~~~~~g~~~~a~~~~~~m~~ 506 (671)
.+...|++++|...|+.+.+
T Consensus 85 ~~~~~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 85 SQYGEGKNTEAQQTLQQVAT 104 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 66667777777777766665
No 181
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.30 E-value=0.00037 Score=56.67 Aligned_cols=86 Identities=14% Similarity=0.112 Sum_probs=51.8
Q ss_pred cCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 042546 456 AGKKDEANEFMDHMEASGS--DVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDA 533 (671)
Q Consensus 456 ~g~~~~A~~~~~~m~~~g~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A 533 (671)
.|++++|+..|++..+.+. +.+...|..+...|...|++++|.+.|++..+ .. +-+...+..+..+|.+.|++++|
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~-~~-p~~~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVK-QF-PNHQALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hC-CCchHHHHHHHHHHHHcCCHHHH
Confidence 4667777777777765431 12334566666677777777777777777765 22 22355566666677777777777
Q ss_pred HHHHHHHHHh
Q 042546 534 CKFVHNCVRE 543 (671)
Q Consensus 534 ~~~~~~m~~~ 543 (671)
...|++....
T Consensus 81 ~~~~~~al~~ 90 (117)
T 3k9i_A 81 VELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 7777766654
No 182
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.28 E-value=0.0014 Score=68.44 Aligned_cols=120 Identities=9% Similarity=-0.088 Sum_probs=92.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCC
Q 042546 450 AFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNR 529 (671)
Q Consensus 450 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~ 529 (671)
...+.+.|++++|.+.|++..+.. +.+..+|..+..+|.+.|++++|.+.+++..+ .. +-+...+..+..+|.+.|+
T Consensus 13 g~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~-l~-p~~~~~~~~lg~~~~~~g~ 89 (477)
T 1wao_1 13 ANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIE-LD-KKYIKGYYRRAASNMALGK 89 (477)
T ss_dssp SSSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-SC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH-hC-CCCHHHHHHHHHHHHHcCC
Confidence 345667899999999999998763 34578899999999999999999999999988 32 3356788889999999999
Q ss_pred HHHHHHHHHHHHHhCCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHH
Q 042546 530 AIDACKFVHNCVREYDLKPWHTTYEELIKN--LLVQRGFKDALSLLC 574 (671)
Q Consensus 530 ~~~A~~~~~~m~~~~~~~p~~~~~~~li~~--~~~~g~~~~A~~l~~ 574 (671)
+++|.+.|++..+...-.+. .+..+..+ +.+.|++++|++.++
T Consensus 90 ~~eA~~~~~~al~~~p~~~~--~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 90 FRAALRDYETVVKVKPHDKD--AKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHHHSTTCTT--HHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHHhCCCCHH--HHHHHHHHHHHHHHHHHHHHhcccc
Confidence 99999999999875333333 44444444 788899999999988
No 183
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.24 E-value=0.0032 Score=65.21 Aligned_cols=98 Identities=11% Similarity=-0.083 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCC-------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 042546 478 DKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHA-------------GYAIDLLVNTYCSKNRAIDACKFVHNCVREY 544 (671)
Q Consensus 478 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~-------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 544 (671)
...|..+-..|.+.|++++|...|++..+...-.++ ...|..+..+|.+.|++++|...|++....
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~- 346 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL- 346 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc-
Confidence 456777777788888888888888887762111111 344444555555555555555555555432
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 042546 545 DLKPWHTTYEELIKNLLVQRGFKDALSLLCLMK 577 (671)
Q Consensus 545 ~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 577 (671)
-..+...|..+-.+|...|++++|+..|++..
T Consensus 347 -~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al 378 (457)
T 1kt0_A 347 -DSANEKGLYRRGEAQLLMNEFESAKGDFEKVL 378 (457)
T ss_dssp -STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred -CCccHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 11233444444444445555555555554444
No 184
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.21 E-value=0.0034 Score=54.31 Aligned_cols=58 Identities=14% Similarity=0.002 Sum_probs=37.4
Q ss_pred HHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhchHhhhc
Q 042546 591 YVSKSGTSDDAIAFLKGMTSKRFPSMSVVLCLFAAFFQARRHSEAQDLLSKCPRYVRN 648 (671)
Q Consensus 591 ~l~~~g~~~~A~~~~~~m~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 648 (671)
++.+.|++++|+..++......+.+...|..+..+|...|++++|...|++.....+.
T Consensus 72 ~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~ 129 (162)
T 3rkv_A 72 CYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPA 129 (162)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGG
T ss_pred HHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCC
Confidence 3445666666666666666655556666777777777777777777777665544333
No 185
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.18 E-value=0.0055 Score=52.95 Aligned_cols=96 Identities=14% Similarity=0.083 Sum_probs=65.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC-------CC----------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 042546 410 MLNSVLKALISVGRMGECNKILKAMEEG-------GF----------IASSNMKSKIAFRLSSAGKKDEANEFMDHMEAS 472 (671)
Q Consensus 410 ~~~~li~~~~~~g~~~~A~~~~~~m~~~-------g~----------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 472 (671)
.+...-..+.+.|++++|...|.+..+. +- +.+...|..+..+|.+.|++++|+..+++..+.
T Consensus 13 ~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~ 92 (162)
T 3rkv_A 13 ALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKR 92 (162)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Confidence 4666777888999999999999887753 00 122345666667777777777777777776655
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 042546 473 GSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVE 506 (671)
Q Consensus 473 g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 506 (671)
. +.+...|..+..+|...|++++|...|++..+
T Consensus 93 ~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 125 (162)
T 3rkv_A 93 E-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLR 125 (162)
T ss_dssp S-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred C-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHh
Confidence 3 33456666677777777777777777776655
No 186
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.12 E-value=0.0052 Score=61.53 Aligned_cols=95 Identities=11% Similarity=-0.074 Sum_probs=49.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCC---------------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 042546 411 LNSVLKALISVGRMGECNKILKAMEEGG---------------FIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSD 475 (671)
Q Consensus 411 ~~~li~~~~~~g~~~~A~~~~~~m~~~g---------------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 475 (671)
+..+...|.+.|++++|.+.|++..+.- -+.+...|..+..+|.+.|++++|++.+++..+.. +
T Consensus 226 ~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p 304 (370)
T 1ihg_A 226 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID-P 304 (370)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-T
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC-c
Confidence 6667778888999999999998877510 01122344444444444444444444444444332 1
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 042546 476 VGDKMWVSLIKGHCVAGDLDKAADCFQKMVE 506 (671)
Q Consensus 476 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 506 (671)
.+...|..+..+|...|++++|.+.|++..+
T Consensus 305 ~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~ 335 (370)
T 1ihg_A 305 SNTKALYRRAQGWQGLKEYDQALADLKKAQE 335 (370)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 1233444444444444444444444444433
No 187
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.10 E-value=0.0045 Score=64.15 Aligned_cols=132 Identities=8% Similarity=-0.062 Sum_probs=88.6
Q ss_pred HHHccCChHHHHHHHHHHHHc---CCCCC----HHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 042546 310 VLGREDCIDRFWKVLDEMRSK---GYEME----METCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIV 382 (671)
Q Consensus 310 ~~~~~g~~~~A~~~~~~m~~~---g~~p~----~~t~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~ 382 (671)
.+...|++++|+.++++..+. -+-|+ ..+++.|...|...|++++|..++++.++.
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i----------------- 380 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDG----------------- 380 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----------------
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH-----------------
Confidence 356789999999999887653 12222 568899999999999999999999987631
Q ss_pred hcCcccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCC-CCC-HHHHHHHHHHHHh
Q 042546 383 VSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEE-----GGF-IAS-SNMKSKIAFRLSS 455 (671)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~-~~~-~~~~~~li~~~~~ 455 (671)
.....-...+....+++.|...|...|++++|..++++..+ .|- .|+ ..+.+.+-.++..
T Consensus 381 -------------~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e 447 (490)
T 3n71_A 381 -------------YMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEME 447 (490)
T ss_dssp -------------HHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHH
T ss_pred -------------HHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH
Confidence 11110011111224678888889999999999988887653 121 111 2344555566667
Q ss_pred cCCHHHHHHHHHHHHH
Q 042546 456 AGKKDEANEFMDHMEA 471 (671)
Q Consensus 456 ~g~~~~A~~~~~~m~~ 471 (671)
.+.+++|+.++..+++
T Consensus 448 ~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 448 LRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7777777777777764
No 188
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.08 E-value=0.0074 Score=62.47 Aligned_cols=119 Identities=9% Similarity=-0.027 Sum_probs=64.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 042546 410 MLNSVLKALISVGRMGECNKILKAMEEGGFIAS---------------SNMKSKIAFRLSSAGKKDEANEFMDHMEASGS 474 (671)
Q Consensus 410 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~---------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 474 (671)
.+..+-..|.+.|++++|...|++..+.. +.+ ...|..+..+|.+.|++++|+..+++..+..
T Consensus 270 ~~~~~G~~~~~~g~~~~A~~~y~~Al~~~-p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~- 347 (457)
T 1kt0_A 270 IVKEKGTVYFKGGKYMQAVIQYGKIVSWL-EMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD- 347 (457)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHH-TTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHh-cccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-
Confidence 36667777888888888888888877642 111 3455555555555566666655555555442
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-CHHHHHHHHHHHHhcCCHHHH
Q 042546 475 DVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSH-AGYAIDLLVNTYCSKNRAIDA 533 (671)
Q Consensus 475 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~~A 533 (671)
+.+...|..+..+|...|++++|...|++..+ +.| +...+..+..++.+.++.++|
T Consensus 348 p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~---l~P~~~~a~~~l~~~~~~~~~~~~a 404 (457)
T 1kt0_A 348 SANEKGLYRRGEAQLLMNEFESAKGDFEKVLE---VNPQNKAARLQISMCQKKAKEHNER 404 (457)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT---TC----CHHHHHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHccCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 22344555555555555555555555555544 122 222344444444444444443
No 189
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=96.98 E-value=0.0026 Score=65.99 Aligned_cols=129 Identities=13% Similarity=0.082 Sum_probs=83.0
Q ss_pred HHHhCCChHHHHHHHHHHHhC--C-CCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 042546 345 RFSERNMVKEAVDLYEFAMAC--K-NKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISV 421 (671)
Q Consensus 345 ~~~~~g~~~~a~~l~~~m~~~--g-~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 421 (671)
.+...|++++|+.++++.++. . +.|+ .+....+++.|...|...
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~---------------------------------Hp~~a~~~~nLa~~y~~~ 364 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADT---------------------------------NLYVLRLLSIASEVLSYL 364 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTT---------------------------------SHHHHHHHHHHHHHHHHT
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCC---------------------------------CHHHHHHHHHHHHHHHHh
Confidence 455789999999999887631 0 0010 011124688899999999
Q ss_pred CCHHHHHHHHHHHHHC-----C-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCC-CCCH-HHHHHHHHH
Q 042546 422 GRMGECNKILKAMEEG-----G-FIA-SSNMKSKIAFRLSSAGKKDEANEFMDHMEA-----SGS-DVGD-KMWVSLIKG 487 (671)
Q Consensus 422 g~~~~A~~~~~~m~~~-----g-~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~-~~~~-~~~~~li~~ 487 (671)
|++++|..++++..+. | -.| ...+++.|...|...|++++|+.++++..+ .|. .|++ .+.+.+-.+
T Consensus 365 g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~ 444 (490)
T 3n71_A 365 QAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQT 444 (490)
T ss_dssp TCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 9999999998887642 2 112 235678888888889999988888887643 221 1111 223444455
Q ss_pred HHhcCCHHHHHHHHHHHHH
Q 042546 488 HCVAGDLDKAADCFQKMVE 506 (671)
Q Consensus 488 ~~~~g~~~~a~~~~~~m~~ 506 (671)
+...+.+++|+.++.++++
T Consensus 445 ~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 445 EMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5566666666666666655
No 190
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=96.92 E-value=0.012 Score=58.79 Aligned_cols=96 Identities=9% Similarity=-0.081 Sum_probs=56.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCC--------------C-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 042546 445 MKSKIAFRLSSAGKKDEANEFMDHMEASG--------------S-DVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEG 509 (671)
Q Consensus 445 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g--------------~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g 509 (671)
.|..+...+.+.|++++|.+.|++..+.- . ..+..+|..+..+|.+.|++++|.+.+++..+ ..
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~-~~ 303 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALE-ID 303 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT-TC
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH-hC
Confidence 46667788999999999999999887510 0 11234455555555555555555555555544 11
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 042546 510 TSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVR 542 (671)
Q Consensus 510 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 542 (671)
+-+...+..+..+|...|++++|.+.|++..+
T Consensus 304 -p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~ 335 (370)
T 1ihg_A 304 -PSNTKALYRRAQGWQGLKEYDQALADLKKAQE 335 (370)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -chhHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 12344455555555555555555555555544
No 191
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=96.88 E-value=0.0047 Score=49.69 Aligned_cols=79 Identities=15% Similarity=0.081 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 042546 426 ECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMV 505 (671)
Q Consensus 426 ~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 505 (671)
+|...|++..+.. +.+...|..+...|...|++++|...|++..+.. +.+...|..+...|...|+.++|...|++..
T Consensus 3 ~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3455555555443 3455566666666666666666666666666543 2345556666666666666666666666655
Q ss_pred H
Q 042546 506 E 506 (671)
Q Consensus 506 ~ 506 (671)
+
T Consensus 81 ~ 81 (115)
T 2kat_A 81 A 81 (115)
T ss_dssp H
T ss_pred H
Confidence 4
No 192
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=96.83 E-value=0.0011 Score=52.79 Aligned_cols=90 Identities=13% Similarity=-0.032 Sum_probs=42.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH----HHHHHhcCChHHHHHHHHHhhhCCCCC------HHHHHH
Q 042546 552 TYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPF----IKYVSKSGTSDDAIAFLKGMTSKRFPS------MSVVLC 621 (671)
Q Consensus 552 ~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~t~----~~~l~~~g~~~~A~~~~~~m~~~~~p~------~~~~~~ 621 (671)
.|..+...+...|++++|++.|++..+. .|+.... ...+.+.|++++|+..+++.....+.+ ...+..
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 83 (111)
T 2l6j_A 6 KQKEQGNSLFKQGLYREAVHCYDQLITA--QPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYR 83 (111)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 3334444444444455554444444432 2222111 223334455555555555554443333 444555
Q ss_pred HHHHHHHcCCHHHHHHHHHhch
Q 042546 622 LFAAFFQARRHSEAQDLLSKCP 643 (671)
Q Consensus 622 l~~~~~~~g~~~~A~~~~~~m~ 643 (671)
+..++...|+.++|.+.+++++
T Consensus 84 ~~~~~~~~~~~~~a~~~~~~~~ 105 (111)
T 2l6j_A 84 LELAQGAVGSVQIPVVEVDELP 105 (111)
T ss_dssp HHHHHHHHHCCCCCSSSSSSCS
T ss_pred HHHHHHHHHhHhhhHhHHHHhH
Confidence 5666666666666665555544
No 193
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=96.79 E-value=0.021 Score=48.43 Aligned_cols=94 Identities=20% Similarity=0.101 Sum_probs=60.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--------H-----HHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----
Q 042546 411 LNSVLKALISVGRMGECNKILKAMEEGGFIAS--------S-----NMKSKIAFRLSSAGKKDEANEFMDHMEAS----- 472 (671)
Q Consensus 411 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~--------~-----~~~~~li~~~~~~g~~~~A~~~~~~m~~~----- 472 (671)
+...-..+.+.|++++|...|++..+.. |+ . ..|+.+-.++.+.|++++|+..+++..+.
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l~--p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~ 91 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAMEIS--HTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRG 91 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHH--TTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccc
Confidence 4556667788899999999998877643 32 2 26777777777777777777777776653
Q ss_pred CCCCC-HHHH----HHHHHHHHhcCCHHHHHHHHHHHHH
Q 042546 473 GSDVG-DKMW----VSLIKGHCVAGDLDKAADCFQKMVE 506 (671)
Q Consensus 473 g~~~~-~~~~----~~li~~~~~~g~~~~a~~~~~~m~~ 506 (671)
.+.|+ ...| ...-.++...|++++|++.|++..+
T Consensus 92 e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 92 ELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp CTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 11233 2345 5555566666666666666665543
No 194
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=96.76 E-value=0.0015 Score=52.10 Aligned_cols=62 Identities=13% Similarity=0.007 Sum_probs=38.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 042546 410 MLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEAS 472 (671)
Q Consensus 410 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 472 (671)
.+..+...+.+.|++++|.+.|++..+.. +.+...|..+..+|.+.|++++|.+.+++..+.
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 67 (111)
T 2l6j_A 6 KQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY 67 (111)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 45555566666667777776666666543 335556666666666666666666666666654
No 195
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=96.67 E-value=0.022 Score=43.02 Aligned_cols=77 Identities=13% Similarity=0.029 Sum_probs=48.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 042546 410 MLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGH 488 (671)
Q Consensus 410 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~ 488 (671)
.+..+...+.+.|++++|...|++..+.. +.+...+..+...|.+.|++++|.+.|++..+.. +.+...+..+...+
T Consensus 11 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~ 87 (91)
T 1na3_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAK 87 (91)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 45556666777777777777777766543 3455666677777777777777777777766543 22344444444443
No 196
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=96.65 E-value=0.075 Score=44.25 Aligned_cols=49 Identities=10% Similarity=-0.065 Sum_probs=20.3
Q ss_pred cCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhC
Q 042546 527 KNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLV----QRGFKDALSLLCLMKDH 579 (671)
Q Consensus 527 ~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~ 579 (671)
.++.++|.+.|++..+. + +...+..|-..|.. .++.++|.++|++..+.
T Consensus 74 ~~d~~~A~~~~~~Aa~~-g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 74 KKDLRKAAQYYSKACGL-N---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp CCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred CccHHHHHHHHHHHHcC-C---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence 34444444444444332 1 23333333333433 34444444444444433
No 197
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=96.63 E-value=0.0047 Score=61.06 Aligned_cols=143 Identities=8% Similarity=-0.014 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 042546 478 DKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELI 557 (671)
Q Consensus 478 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li 557 (671)
...+..+...+.+.|++++|...|++..+ ..|+... +...|+.+++...+ . ...|..+.
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~---~~p~~~~-------~~~~~~~~~~~~~l---~--------~~~~~nla 237 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIA---YMGDDFM-------FQLYGKYQDMALAV---K--------NPCHLNIA 237 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHH---HSCHHHH-------HTCCHHHHHHHHHH---H--------THHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH---Hhccchh-------hhhcccHHHHHHHH---H--------HHHHHHHH
Confidence 45577777778888888999888888776 2344331 11222222222111 0 12455555
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHH-HH---HHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHH-HHcCCH
Q 042546 558 KNLLVQRGFKDALSLLCLMKDHGFPPFVD-PF---IKYVSKSGTSDDAIAFLKGMTSKRFPSMSVVLCLFAAF-FQARRH 632 (671)
Q Consensus 558 ~~~~~~g~~~~A~~l~~~m~~~~~~p~~~-t~---~~~l~~~g~~~~A~~~~~~m~~~~~p~~~~~~~l~~~~-~~~g~~ 632 (671)
.+|.+.|++++|++.+++..+. .|+.. .+ ..+|...|++++|+..|++.....+.+...+..+.... ...+..
T Consensus 238 ~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~ 315 (338)
T 2if4_A 238 ACLIKLKRYDEAIGHCNIVLTE--EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALY 315 (338)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-----------------------
T ss_pred HHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Confidence 6666666666666666666543 33321 11 34445666666666666666655444444555444442 233455
Q ss_pred HHHHHHHHhch
Q 042546 633 SEAQDLLSKCP 643 (671)
Q Consensus 633 ~~A~~~~~~m~ 643 (671)
+++.++|++|.
T Consensus 316 ~~a~~~~~~~l 326 (338)
T 2if4_A 316 QKQKEMYKGIF 326 (338)
T ss_dssp -----------
T ss_pred HHHHHHHHHhh
Confidence 55556665554
No 198
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=96.62 E-value=0.14 Score=54.29 Aligned_cols=133 Identities=11% Similarity=0.027 Sum_probs=70.9
Q ss_pred HHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCCCCHHHH---HHHHHhcC-ChHHHHH
Q 042546 530 AIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQR--GFKDALSLLCLMKDHGFPPFVDPF---IKYVSKSG-TSDDAIA 603 (671)
Q Consensus 530 ~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g--~~~~A~~l~~~m~~~~~~p~~~t~---~~~l~~~g-~~~~A~~ 603 (671)
++++.+.++.+.+. -.-+..+|+.--..+.+.| +++++++.++++.+.... +...+ ..++.+.| ..+++.+
T Consensus 89 ~~~eL~~~~~~l~~--~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~ 165 (567)
T 1dce_A 89 VKAELGFLESCLRV--NPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELA 165 (567)
T ss_dssp HHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHH
T ss_pred HHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHH
Confidence 55566666665543 2234445555555555555 456666666666553211 12222 22233445 5666666
Q ss_pred HHHHhhhCCCCCHHHHHHHHHHHHHc--------------CCHHHHHHHHHhchHhhhccHHHHHHHHhhhcCCCC
Q 042546 604 FLKGMTSKRFPSMSVVLCLFAAFFQA--------------RRHSEAQDLLSKCPRYVRNHADVLNLLYSKKSGGDS 665 (671)
Q Consensus 604 ~~~~m~~~~~p~~~~~~~l~~~~~~~--------------g~~~~A~~~~~~m~~~~~~~~~~~~l~~~m~~~g~~ 665 (671)
+++++++..+-|...|.....++.+. +++++|.+.+++.....+..+.++.+..-+...+.+
T Consensus 166 ~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~ 241 (567)
T 1dce_A 166 FTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEP 241 (567)
T ss_dssp HHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCC
T ss_pred HHHHHHHHCCCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCC
Confidence 66666666666666666666555552 345666666666555455555666555555544433
No 199
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=96.59 E-value=0.019 Score=48.76 Aligned_cols=52 Identities=13% Similarity=-0.046 Sum_probs=37.5
Q ss_pred HhcCChHHHHHHHHHhhhC-------CCCCHHHH----HHHHHHHHHcCCHHHHHHHHHhchH
Q 042546 593 SKSGTSDDAIAFLKGMTSK-------RFPSMSVV----LCLFAAFFQARRHSEAQDLLSKCPR 644 (671)
Q Consensus 593 ~~~g~~~~A~~~~~~m~~~-------~~p~~~~~----~~l~~~~~~~g~~~~A~~~~~~m~~ 644 (671)
.+.|++++|+..+++.... .+.+...| .....+|...|++++|++.|++..+
T Consensus 68 ~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 68 AGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 3445555555555444443 55567778 8999999999999999999999654
No 200
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=96.58 E-value=0.0078 Score=59.47 Aligned_cols=144 Identities=9% Similarity=-0.027 Sum_probs=68.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 042546 411 LNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCV 490 (671)
Q Consensus 411 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~ 490 (671)
+..+...+.+.|++++|...|++..+. .|+... +...|+.+++...+. ...|..+..+|.+
T Consensus 182 ~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~~~~ 242 (338)
T 2if4_A 182 RKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAACLIK 242 (338)
T ss_dssp HHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHHHHH
Confidence 566677778899999999999987754 244331 112233333322221 1255666666777
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCH-HHHHHHHHH-HHhcCCHHH
Q 042546 491 AGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWH-TTYEELIKN-LLVQRGFKD 568 (671)
Q Consensus 491 ~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~-~~~~~li~~-~~~~g~~~~ 568 (671)
.|++++|...+++..+ .. ..+...|..+..+|...|++++|...|++... +.|+. ..+..+... ....+..++
T Consensus 243 ~g~~~~A~~~~~~al~-~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~---l~p~~~~a~~~L~~l~~~~~~~~~~ 317 (338)
T 2if4_A 243 LKRYDEAIGHCNIVLT-EE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQK---YAPDDKAIRRELRALAEQEKALYQK 317 (338)
T ss_dssp TTCCHHHHHHHHHHHH-HC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC----------------------------
T ss_pred cCCHHHHHHHHHHHHH-hC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777665 21 22455666666777777777777777776653 23332 233333333 223455566
Q ss_pred HHHHHHHHHh
Q 042546 569 ALSLLCLMKD 578 (671)
Q Consensus 569 A~~l~~~m~~ 578 (671)
+.++|+.|..
T Consensus 318 a~~~~~~~l~ 327 (338)
T 2if4_A 318 QKEMYKGIFK 327 (338)
T ss_dssp ----------
T ss_pred HHHHHHHhhC
Confidence 6667776653
No 201
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=96.55 E-value=0.012 Score=47.25 Aligned_cols=79 Identities=15% Similarity=0.061 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 042546 461 EANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNC 540 (671)
Q Consensus 461 ~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 540 (671)
+|.+.|++..+.. +.+...+..+...|...|++++|...|++..+ .. +.+...|..+..+|...|+.++|...|++.
T Consensus 3 ~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~-~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 79 (115)
T 2kat_A 3 AITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALD-FD-PTYSVAWKWLGKTLQGQGDRAGARQAWESG 79 (115)
T ss_dssp CHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH-HC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4566677766553 34566777777888888888888888888776 22 234556777777788888888888888776
Q ss_pred HH
Q 042546 541 VR 542 (671)
Q Consensus 541 ~~ 542 (671)
..
T Consensus 80 l~ 81 (115)
T 2kat_A 80 LA 81 (115)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 202
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=96.48 E-value=0.078 Score=44.13 Aligned_cols=110 Identities=13% Similarity=-0.026 Sum_probs=82.4
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHH
Q 042546 422 GRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCV----AGDLDKA 497 (671)
Q Consensus 422 g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~a 497 (671)
++.++|.+.|++..+.| .|+.. |-..|...+.+++|.+.|++..+.| +...+..+-..|.. .++.++|
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHH
Confidence 46778888888888777 34433 6666667777888888888887754 56777777777777 7888888
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHh
Q 042546 498 ADCFQKMVEKEGTSHAGYAIDLLVNTYCS----KNRAIDACKFVHNCVRE 543 (671)
Q Consensus 498 ~~~~~~m~~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~ 543 (671)
.++|++..+ .| +...+..|-..|.. .++.++|.+.|+...+.
T Consensus 81 ~~~~~~Aa~-~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 81 AQYYSKACG-LN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp HHHHHHHHH-TT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHc-CC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence 888888887 54 45667777777777 78888888888887763
No 203
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=96.39 E-value=0.015 Score=45.35 Aligned_cols=60 Identities=5% Similarity=-0.011 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 042546 409 AMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHM 469 (671)
Q Consensus 409 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 469 (671)
..+..+...|.+.|++++|...|++..+.. +.+...|..+..+|.+.|++++|.+.|++.
T Consensus 8 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 67 (100)
T 3ma5_A 8 FTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQG 67 (100)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 344444444444444444444444444332 223334444444444444444444444443
No 204
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.31 E-value=0.026 Score=57.45 Aligned_cols=111 Identities=9% Similarity=-0.019 Sum_probs=74.8
Q ss_pred hcCCHHHHHHHHHHHHHhC--CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHhcCChH
Q 042546 526 SKNRAIDACKFVHNCVREY--DLKPW----HTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPFIKYVSKSGTSD 599 (671)
Q Consensus 526 ~~g~~~~A~~~~~~m~~~~--~~~p~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~t~~~~l~~~g~~~ 599 (671)
..|++++|..++++..... -+.|+ ..+++.|...|...|++++|+.++++..
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL---------------------- 367 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKII---------------------- 367 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH----------------------
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH----------------------
Confidence 3467888888877665421 22333 2467777888888888888888777654
Q ss_pred HHHHHHHHhhhCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHhchH-----hhhccHHHHHHHHhhhc
Q 042546 600 DAIAFLKGMTSKRFPS-MSVVLCLFAAFFQARRHSEAQDLLSKCPR-----YVRNHADVLNLLYSKKS 661 (671)
Q Consensus 600 ~A~~~~~~m~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-----~~~~~~~~~~l~~~m~~ 661 (671)
.+++...-...|+ ..+|+.|...|...|++++|+.++++..+ .+.+++...++...|.+
T Consensus 368 ---~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~l~~~l~~ 432 (433)
T 3qww_A 368 ---KPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISEIKQEIES 432 (433)
T ss_dssp ---HHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHC
T ss_pred ---HHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHhc
Confidence 2233222222243 35688899999999999999999998543 34578888888777764
No 205
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.26 E-value=0.11 Score=58.05 Aligned_cols=46 Identities=13% Similarity=0.229 Sum_probs=24.3
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 042546 454 SSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMV 505 (671)
Q Consensus 454 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 505 (671)
.+.|++++|+++.+. ..+...|..+...+.+.++++.|.+.|.++.
T Consensus 663 l~~~~~~~A~~~~~~------~~~~~~W~~la~~al~~~~~~~A~~~y~~~~ 708 (814)
T 3mkq_A 663 LKVGQLTLARDLLTD------ESAEMKWRALGDASLQRFNFKLAIEAFTNAH 708 (814)
T ss_dssp HHHTCHHHHHHHHTT------CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred hhcCCHHHHHHHHHh------hCcHhHHHHHHHHHHHcCCHHHHHHHHHHcc
Confidence 345555555555432 1244555555555555555555555555553
No 206
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=96.20 E-value=0.029 Score=43.60 Aligned_cols=66 Identities=12% Similarity=0.017 Sum_probs=57.7
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 042546 440 IASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVE 506 (671)
Q Consensus 440 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 506 (671)
+-+...|..+...|.+.|++++|...|++..+.. +.+...|..+..+|...|++++|.+.|++..+
T Consensus 4 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 4 PEDPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp -CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3467788999999999999999999999998875 33567899999999999999999999999876
No 207
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=96.16 E-value=0.2 Score=53.07 Aligned_cols=174 Identities=8% Similarity=-0.089 Sum_probs=127.6
Q ss_pred CChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHccCC----------hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 042546 279 DEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDC----------IDRFWKVLDEMRSKGYEMEMETCVKVLGRFSE 348 (671)
Q Consensus 279 ~~~~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~ 348 (671)
..-++|++.++.+.... +.+..+|+.--..+.+.|+ ++++++.++.+.+..- -+..+|+.--..+.+
T Consensus 43 ~~~eeal~~~~~~l~~n--P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~p-K~y~aW~hR~w~l~~ 119 (567)
T 1dce_A 43 ELDESVLELTSQILGAN--PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNP-KSYGTWHHRCWLLSR 119 (567)
T ss_dssp CCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHC--chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHH
Confidence 45678899999987643 5667888877777777676 8999999999988743 378889988888888
Q ss_pred CC--ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-CHH
Q 042546 349 RN--MVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVG-RMG 425 (671)
Q Consensus 349 ~g--~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~ 425 (671)
.+ +++++++.++++.+.. +-+...|+---..+.+.| ..+
T Consensus 120 l~~~~~~~el~~~~k~l~~d--------------------------------------~~N~~aW~~R~~~l~~l~~~~~ 161 (567)
T 1dce_A 120 LPEPNWARELELCARFLEAD--------------------------------------ERNFHCWDYRRFVAAQAAVAPA 161 (567)
T ss_dssp CSSCCHHHHHHHHHHHHHHC--------------------------------------TTCHHHHHHHHHHHHHTCCCHH
T ss_pred cccccHHHHHHHHHHHHhhc--------------------------------------cccccHHHHHHHHHHHcCCChH
Confidence 88 6799999999988531 223334555445556667 788
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc--------------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 042546 426 ECNKILKAMEEGGFIASSNMKSKIAFRLSSA--------------GKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVA 491 (671)
Q Consensus 426 ~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~--------------g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 491 (671)
++.+.++++.+.. +-|...|+-....+.+. +.++++.+.+++..... +-|...|+..-..+.+.
T Consensus 162 ~el~~~~~~I~~~-p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~ 239 (567)
T 1dce_A 162 EELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRA 239 (567)
T ss_dssp HHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHC-CCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcC
Confidence 8999988888765 46778888777766653 45788888888887654 33667788777777776
Q ss_pred CCHH
Q 042546 492 GDLD 495 (671)
Q Consensus 492 g~~~ 495 (671)
+..+
T Consensus 240 ~~~~ 243 (567)
T 1dce_A 240 EPHD 243 (567)
T ss_dssp CCCS
T ss_pred CCcc
Confidence 6633
No 208
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=96.14 E-value=0.018 Score=48.82 Aligned_cols=98 Identities=9% Similarity=-0.042 Sum_probs=65.2
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH----------HHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 042546 419 ISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKK----------DEANEFMDHMEASGSDVGDKMWVSLIKGH 488 (671)
Q Consensus 419 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~----------~~A~~~~~~m~~~g~~~~~~~~~~li~~~ 488 (671)
.+.+.+++|.+.++...+.. +.+...|+.+-.++...+++ ++|+..|++..+.. +-+..+|..+-.+|
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-P~~~~A~~~LG~ay 90 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNAY 90 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-cCcHHHHHHHHHHH
Confidence 45567788888888887765 55777777777777776654 47777777777653 22456677777777
Q ss_pred HhcC-----------CHHHHHHHHHHHHHcCCCCCCHHHHHHHH
Q 042546 489 CVAG-----------DLDKAADCFQKMVEKEGTSHAGYAIDLLV 521 (671)
Q Consensus 489 ~~~g-----------~~~~a~~~~~~m~~~~g~~p~~~~~~~li 521 (671)
...| ++++|.+.|++..+ +.|+...|..-+
T Consensus 91 ~~lg~l~P~~~~a~g~~~eA~~~~~kAl~---l~P~~~~y~~al 131 (158)
T 1zu2_A 91 TSFAFLTPDETEAKHNFDLATQFFQQAVD---EQPDNTHYLKSL 131 (158)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHHHHHH---HCTTCHHHHHHH
T ss_pred HHhcccCcchhhhhccHHHHHHHHHHHHH---hCCCCHHHHHHH
Confidence 6653 67777777777665 455554444333
No 209
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=96.08 E-value=0.066 Score=40.19 Aligned_cols=62 Identities=23% Similarity=0.298 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 042546 444 NMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVE 506 (671)
Q Consensus 444 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 506 (671)
..+..+...+.+.|++++|...|++..+.. +.+...+..+...+.+.|++++|.+.+++..+
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 71 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 345555555566666666666666655442 22344555555555555666666655555554
No 210
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.06 E-value=0.051 Score=55.31 Aligned_cols=114 Identities=9% Similarity=-0.041 Sum_probs=69.5
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhC--CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHhc
Q 042546 522 NTYCSKNRAIDACKFVHNCVREY--DLKPW----HTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPFIKYVSKS 595 (671)
Q Consensus 522 ~~~~~~g~~~~A~~~~~~m~~~~--~~~p~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~t~~~~l~~~ 595 (671)
..+.+.|++++|..++++..... -+.|+ ..+++.|...|...|++++|+.++++..
T Consensus 295 e~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L------------------ 356 (429)
T 3qwp_A 295 EELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTM------------------ 356 (429)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH------------------
T ss_pred HHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHH------------------
Confidence 33456677788887777776421 12233 2367777777888888888888777664
Q ss_pred CChHHHHHHHHHhhhCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHhchH-----hhhccHHHHHHHHhhh
Q 042546 596 GTSDDAIAFLKGMTSKRFPS-MSVVLCLFAAFFQARRHSEAQDLLSKCPR-----YVRNHADVLNLLYSKK 660 (671)
Q Consensus 596 g~~~~A~~~~~~m~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-----~~~~~~~~~~l~~~m~ 660 (671)
.+++...-...|+ ..+++.|...|...|++++|+.++++..+ .+.+++...++...|.
T Consensus 357 -------~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~ 420 (429)
T 3qwp_A 357 -------EPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLE 420 (429)
T ss_dssp -------HHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHH
T ss_pred -------HhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 2222222222232 34577778888888888888888877543 2345666665555443
No 211
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=95.64 E-value=0.47 Score=38.22 Aligned_cols=140 Identities=10% Similarity=0.036 Sum_probs=89.6
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 042546 419 ISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAA 498 (671)
Q Consensus 419 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~ 498 (671)
.-.|.+++..++..+... ..+..-||.+|.-....-+-+-..++++.+-+. -| ...+|++....
T Consensus 18 ildG~v~qGveii~k~~~---ssni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FD----------is~C~NlKrVi 81 (172)
T 1wy6_A 18 LLDGYIDEGVKIVLEITK---SSTKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FD----------LDKCQNLKSVV 81 (172)
T ss_dssp HHTTCHHHHHHHHHHHHH---HSCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SC----------GGGCSCTHHHH
T ss_pred HHhhhHHHHHHHHHHHcC---CCCccccceeeeecchhhchhHHHHHHHHHhhh---cC----------cHhhhcHHHHH
Confidence 345777777777777765 345566677776666666655555555554321 11 13445555555
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 042546 499 DCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKD 578 (671)
Q Consensus 499 ~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 578 (671)
..+-.+-. +......-++.....|+-|.-.+++..+.. +..|+....-.+..+|.+.|+..+|.+++.+.-+
T Consensus 82 ~C~~~~n~------~se~vd~ALd~lv~~~KkDqLdki~~~~l~--n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~ 153 (172)
T 1wy6_A 82 ECGVINNT------LNEHVNKALDILVIQGKRDKLEEIGREILK--NNEVSASILVAIANALRRVGDERDATTLLIEACK 153 (172)
T ss_dssp HHHHHTTC------CCHHHHHHHHHHHHTTCHHHHHHHHHHHC----CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhcc------hHHHHHHHHHHHHHhccHhHHHHHHHHHhc--cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 55544433 445566667777778888888888877543 4567777777778888888888888888888877
Q ss_pred CCCC
Q 042546 579 HGFP 582 (671)
Q Consensus 579 ~~~~ 582 (671)
.|++
T Consensus 154 kG~k 157 (172)
T 1wy6_A 154 KGEK 157 (172)
T ss_dssp TTCH
T ss_pred hhhH
Confidence 7754
No 212
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=95.50 E-value=0.047 Score=42.05 Aligned_cols=56 Identities=20% Similarity=0.148 Sum_probs=28.9
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHH--H---HHHHHhcCChHHHHHHHHHhhhCCCCC
Q 042546 558 KNLLVQRGFKDALSLLCLMKDHGFPPFVDP--F---IKYVSKSGTSDDAIAFLKGMTSKRFPS 615 (671)
Q Consensus 558 ~~~~~~g~~~~A~~l~~~m~~~~~~p~~~t--~---~~~l~~~g~~~~A~~~~~~m~~~~~p~ 615 (671)
..+.+.|++++|++.+++..+. .|+... + ...+...|++++|...|++..+..+.+
T Consensus 8 ~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~ 68 (99)
T 2kc7_A 8 KELINQGDIENALQALEEFLQT--EPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDS 68 (99)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHH--CSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTS
T ss_pred HHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Confidence 3455566666666666665543 333222 1 233345566666666666665544433
No 213
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=95.34 E-value=0.089 Score=53.45 Aligned_cols=93 Identities=10% Similarity=0.020 Sum_probs=65.2
Q ss_pred ccCChHHHHHHHHHHHHc---CCCCC----HHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 042546 313 REDCIDRFWKVLDEMRSK---GYEME----METCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSK 385 (671)
Q Consensus 313 ~~g~~~~A~~~~~~m~~~---g~~p~----~~t~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~ 385 (671)
..|++++|+.++++..+. -+-|+ ..+++.|...|...|++++|..++++.++.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i-------------------- 369 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKP-------------------- 369 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------------------
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHH--------------------
Confidence 457899999999887652 22233 578899999999999999999999987631
Q ss_pred cccHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 042546 386 QLDMRLFSKVVRVFRENGNVLT-DAMLNSVLKALISVGRMGECNKILKAMEE 436 (671)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 436 (671)
.+...-. ..|+ ..+++.|-..|...|++++|..++++..+
T Consensus 370 ----------~~~~lG~-~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 370 ----------YSKHYPV-YSLNVASMWLKLGRLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp ----------HHHHSCS-SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ----------HHHHcCC-CChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 1100001 1122 23578888888888888888888877653
No 214
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=95.32 E-value=0.7 Score=51.48 Aligned_cols=27 Identities=7% Similarity=-0.255 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 042546 443 SNMKSKIAFRLSSAGKKDEANEFMDHM 469 (671)
Q Consensus 443 ~~~~~~li~~~~~~g~~~~A~~~~~~m 469 (671)
...|..+...+.+.|+++.|.+.|..+
T Consensus 681 ~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 681 EMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 344444444444444444444444443
No 215
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=95.08 E-value=0.18 Score=51.25 Aligned_cols=99 Identities=12% Similarity=0.017 Sum_probs=68.9
Q ss_pred HHHHHHccCChHHHHHHHHHHHHcC---CCCC----HHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 042546 307 MASVLGREDCIDRFWKVLDEMRSKG---YEME----METCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLR 379 (671)
Q Consensus 307 li~~~~~~g~~~~A~~~~~~m~~~g---~~p~----~~t~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~ 379 (671)
.+..+.+.|++++|+.++++..+.. +.|+ ..+++.+...|...|++++|+.++++.+..
T Consensus 293 ~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i-------------- 358 (429)
T 3qwp_A 293 KIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEP-------------- 358 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------------
T ss_pred HHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHh--------------
Confidence 3556778899999999999887541 2232 567888999999999999999999987631
Q ss_pred HHHhcCcccHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 042546 380 KIVVSKQLDMRLFSKVVRVFRENGNVLT-DAMLNSVLKALISVGRMGECNKILKAMEE 436 (671)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 436 (671)
.+...-. ..|+ ..+++.|...|...|++++|..++++..+
T Consensus 359 ----------------~~~~lg~-~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 359 ----------------YRIFFPG-SHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp ----------------HHHHSCS-SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ----------------HHHHcCC-CChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 0100001 1121 23577788888888888888888877653
No 216
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=95.04 E-value=0.085 Score=40.53 Aligned_cols=58 Identities=12% Similarity=0.083 Sum_probs=41.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 042546 415 LKALISVGRMGECNKILKAMEEGGFIASSN-MKSKIAFRLSSAGKKDEANEFMDHMEASG 473 (671)
Q Consensus 415 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g 473 (671)
...+.+.|++++|...|++..+.. +.+.. .|..+...|.+.|++++|.+.|++..+..
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 345667788888888888777654 34556 77777777888888888888888777653
No 217
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=94.98 E-value=0.12 Score=43.70 Aligned_cols=98 Identities=10% Similarity=-0.033 Sum_probs=78.1
Q ss_pred CChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHccCCh----------HHHHHHHHHHHHcCCCC-CHHHHHHHHHHHH
Q 042546 279 DEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCI----------DRFWKVLDEMRSKGYEM-EMETCVKVLGRFS 347 (671)
Q Consensus 279 ~~~~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~g~~----------~~A~~~~~~m~~~g~~p-~~~t~~~li~~~~ 347 (671)
+.+++|.+.++...+.. +.+...|+.+-.++.+.+++ ++|+..|++..+. .| +..+|..+-.+|.
T Consensus 16 ~~feeA~~~~~~Ai~l~--P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~l--dP~~~~A~~~LG~ay~ 91 (158)
T 1zu2_A 16 LLFEQIRQDAENTYKSN--PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI--DPKKDEAVWCIGNAYT 91 (158)
T ss_dssp HHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHh--CcCcHHHHHHHHHHHH
Confidence 56889999999887644 66888999888888888765 5999999999886 34 5788999999998
Q ss_pred hCC-----------ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 042546 348 ERN-----------MVKEAVDLYEFAMACKNKPSVNCCTFLLRKIV 382 (671)
Q Consensus 348 ~~g-----------~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~ 382 (671)
..| ++++|++.|++..+ +.|+...|...+...-
T Consensus 92 ~lg~l~P~~~~a~g~~~eA~~~~~kAl~--l~P~~~~y~~al~~~~ 135 (158)
T 1zu2_A 92 SFAFLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHYLKSLEMTA 135 (158)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHH
T ss_pred HhcccCcchhhhhccHHHHHHHHHHHHH--hCCCCHHHHHHHHHHH
Confidence 774 89999999999986 4777777666555543
No 218
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=94.94 E-value=0.62 Score=45.48 Aligned_cols=73 Identities=8% Similarity=0.017 Sum_probs=43.3
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 042546 511 SHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPF 588 (671)
Q Consensus 511 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~t~ 588 (671)
..+..+|.++...+...|++++|...+++.... .|+...|..+-..+.-.|++++|.+.+++... +.|...+|
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~L---n~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr--L~P~~~t~ 346 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDL---EMSWLNYVLLGKVYEMKGMNREAADAYLTAFN--LRPGANTL 346 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSCSHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCcChH
Confidence 345555655555555556777777777666653 25655555555566666777777776666654 34555444
No 219
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=94.84 E-value=0.48 Score=46.28 Aligned_cols=61 Identities=11% Similarity=-0.038 Sum_probs=30.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH---HHHHHhcCChHHHHHHHHHhhhC
Q 042546 549 WHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPF---IKYVSKSGTSDDAIAFLKGMTSK 611 (671)
Q Consensus 549 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~t~---~~~l~~~g~~~~A~~~~~~m~~~ 611 (671)
+..+|.++...+...|++++|.+.+++....+ |+...+ ...+.-.|+.++|.+.+++....
T Consensus 276 ~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL 339 (372)
T 3ly7_A 276 LSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL 339 (372)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 44455544444444555555555555555543 443322 22234455555555555555543
No 220
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=94.84 E-value=1.3 Score=38.07 Aligned_cols=45 Identities=20% Similarity=0.244 Sum_probs=23.9
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 042546 455 SAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMV 505 (671)
Q Consensus 455 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 505 (671)
+.|+++.|.++.+++ -+...|..|-......|+++-|.+.|.+..
T Consensus 17 ~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~ 61 (177)
T 3mkq_B 17 EYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQH 61 (177)
T ss_dssp HTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred hcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhC
Confidence 355555555554443 234455555555555555555555555543
No 221
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=94.49 E-value=0.21 Score=41.77 Aligned_cols=90 Identities=11% Similarity=0.053 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHhCCCCCCHHH--HHHHHHhcC---ChHHHHHHHHHhhhCCCC--CHHHHHHHHHHHHHcCCHHHHHHH
Q 042546 566 FKDALSLLCLMKDHGFPPFVDP--FIKYVSKSG---TSDDAIAFLKGMTSKRFP--SMSVVLCLFAAFFQARRHSEAQDL 638 (671)
Q Consensus 566 ~~~A~~l~~~m~~~~~~p~~~t--~~~~l~~~g---~~~~A~~~~~~m~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~ 638 (671)
...+.+-|.+....|....... |..+|++.+ ++++|+.+|+...+...| +...+-.|.-+|.+.|++++|.+.
T Consensus 14 l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y 93 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKY 93 (152)
T ss_dssp HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHH
Confidence 3445555555555444222222 355666666 566788888877775533 345556677778888888888888
Q ss_pred HHhchHhhhccHHHHHH
Q 042546 639 LSKCPRYVRNHADVLNL 655 (671)
Q Consensus 639 ~~~m~~~~~~~~~~~~l 655 (671)
++...+.-+.+..+..+
T Consensus 94 ~~~lL~ieP~n~QA~~L 110 (152)
T 1pc2_A 94 VRGLLQTEPQNNQAKEL 110 (152)
T ss_dssp HHHHHHHCTTCHHHHHH
T ss_pred HHHHHhcCCCCHHHHHH
Confidence 88877655555555444
No 222
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=94.27 E-value=1.6 Score=37.38 Aligned_cols=48 Identities=8% Similarity=-0.001 Sum_probs=33.4
Q ss_pred HHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHH
Q 042546 310 VLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAM 363 (671)
Q Consensus 310 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~ 363 (671)
...+.|+++.|.++.+++ -+...|..|-....+.|+++-|.+.|....
T Consensus 14 LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~ 61 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQH 61 (177)
T ss_dssp HHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred HHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhC
Confidence 345667777777776665 256677777777777777777777777654
No 223
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=93.69 E-value=0.22 Score=38.83 Aligned_cols=47 Identities=21% Similarity=0.089 Sum_probs=29.8
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHhchHhhhccHHH---HHHHHhhh
Q 042546 614 PSMSVVLCLFAAFFQARRHSEAQDLLSKCPRYVRNHADV---LNLLYSKK 660 (671)
Q Consensus 614 p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~---~~l~~~m~ 660 (671)
+....+..+..+|.+.|++++|..++++.....+.++.+ ..+|..+.
T Consensus 44 ~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n~~~~~~~~ 93 (104)
T 2v5f_A 44 DKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLKYFEYIM 93 (104)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhhHHHHHHHH
Confidence 455667777777777788777777777766554444433 33444443
No 224
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=93.30 E-value=0.76 Score=34.85 Aligned_cols=66 Identities=17% Similarity=-0.009 Sum_probs=41.7
Q ss_pred CHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 042546 407 TDAMLNSVLKALISVGR---MGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASG 473 (671)
Q Consensus 407 ~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 473 (671)
|...+..+..++...++ .++|..+|++..+.. +-+......+...+.+.|++++|...|+++.+..
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 34445555555543333 577777777777654 4455666666677777777777777777777653
No 225
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=92.29 E-value=0.61 Score=38.94 Aligned_cols=16 Identities=13% Similarity=0.175 Sum_probs=6.0
Q ss_pred HhcCCHHHHHHHHHHH
Q 042546 489 CVAGDLDKAADCFQKM 504 (671)
Q Consensus 489 ~~~g~~~~a~~~~~~m 504 (671)
.+.|++++|.+.++.+
T Consensus 82 ~kl~~Y~~A~~y~~~l 97 (152)
T 1pc2_A 82 YRLKEYEKALKYVRGL 97 (152)
T ss_dssp HHTSCHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHH
Confidence 3333333333333333
No 226
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=91.45 E-value=3.5 Score=31.08 Aligned_cols=65 Identities=12% Similarity=0.149 Sum_probs=39.5
Q ss_pred CCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 042546 441 ASSNMKSKIAFRLSSAGK---KDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVE 506 (671)
Q Consensus 441 ~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 506 (671)
.|...+..+..++...++ .++|..++++..+.. +-+......+-..+.+.|++++|...|+++.+
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~ 71 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLD 71 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 455555555555544333 567777777766553 23445555666666677777777777777665
No 227
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=91.42 E-value=1.3 Score=34.26 Aligned_cols=65 Identities=8% Similarity=-0.026 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 042546 408 DAMLNSVLKALISVGRMGECNKILKAMEEGG------FIASSNMKSKIAFRLSSAGKKDEANEFMDHMEAS 472 (671)
Q Consensus 408 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 472 (671)
...+..|...+.+.|+++.|...|+...+.- -.+....+..+..+|.+.|++++|...+++..+.
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 3445667777778888888888887765421 1234566777777777777777777777777654
No 228
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.37 E-value=13 Score=37.54 Aligned_cols=165 Identities=8% Similarity=0.019 Sum_probs=101.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-C----HHHHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCCCCH--H
Q 042546 411 LNSVLKALISVGRMGECNKILKAMEEGGFIA-S----SNMKSKIAFRLSSAGKKDEANEFMDHMEA----SGSDVGD--K 479 (671)
Q Consensus 411 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~-~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~~~~~--~ 479 (671)
...|...|...|++.+|.+++.++...-... + ...|...+..|...+++..|..++.++.. ....|+. .
T Consensus 140 ~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~ 219 (445)
T 4b4t_P 140 TKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLE 219 (445)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHH
Confidence 4567788999999999999999987431112 2 34677788889999999999999988642 2222322 3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHH----HHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHH
Q 042546 480 MWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVN----TYCSKNRAIDACKFVHNCVREYDLKPWHTTYEE 555 (671)
Q Consensus 480 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~----~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ 555 (671)
.+...+..+...+++.+|.+.|.+..+.....-|...+..++. +..-.+....-..+....... ...++...|..
T Consensus 220 ~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~~iLa~~~~~~~~ll~~~~~~-~~~~~l~~~~~ 298 (445)
T 4b4t_P 220 YYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYFLVLSPYGNLQNDLIHKIQND-NNLKKLESQES 298 (445)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSSCSSTTHHHHHSHHHH-SSCHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHhhc-ccccccHHHHH
Confidence 4677777888899999998888877652222223322222221 111222222223333333332 22356678888
Q ss_pred HHHHHHhc--CCHHHHHHHHHHH
Q 042546 556 LIKNLLVQ--RGFKDALSLLCLM 576 (671)
Q Consensus 556 li~~~~~~--g~~~~A~~l~~~m 576 (671)
++.+|... .+++.+.+.|...
T Consensus 299 L~k~f~~~~L~~~~~~~~~~~~~ 321 (445)
T 4b4t_P 299 LVKLFTTNELMRWPIVQKTYEPV 321 (445)
T ss_dssp HHHHHHHCCSSSHHHHHHHTCSS
T ss_pred HHHHHHhchHhhhHHHHHHHHHH
Confidence 88888763 4566666666543
No 229
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=90.45 E-value=2.1 Score=34.35 Aligned_cols=91 Identities=12% Similarity=0.075 Sum_probs=55.3
Q ss_pred CHHHHHHHHHHHHhCCCCCCH-HH--HHHHHHhcCChHH---HHHHHHHhhhCCCC--CHHHHHHHHHHHHHcCCHHHHH
Q 042546 565 GFKDALSLLCLMKDHGFPPFV-DP--FIKYVSKSGTSDD---AIAFLKGMTSKRFP--SMSVVLCLFAAFFQARRHSEAQ 636 (671)
Q Consensus 565 ~~~~A~~l~~~m~~~~~~p~~-~t--~~~~l~~~g~~~~---A~~~~~~m~~~~~p--~~~~~~~l~~~~~~~g~~~~A~ 636 (671)
.+..+.+-|.+....|. |+. .. |..+|.+.....+ ++.+++.+.+...| .....-.|.-++.+.|++++|.
T Consensus 16 ~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~ 94 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKAL 94 (126)
T ss_dssp HHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHH
Confidence 34445555554444343 333 22 3556666665444 78888877776533 3344455677888888888888
Q ss_pred HHHHhchHhhhccHHHHHHH
Q 042546 637 DLLSKCPRYVRNHADVLNLL 656 (671)
Q Consensus 637 ~~~~~m~~~~~~~~~~~~l~ 656 (671)
+.++.+.+.-+....+..|-
T Consensus 95 ~~~~~lL~~eP~n~QA~~Lk 114 (126)
T 1nzn_A 95 KYVRGLLQTEPQNNQAKELE 114 (126)
T ss_dssp HHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHH
Confidence 88888776655555554443
No 230
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=89.97 E-value=6.7 Score=31.71 Aligned_cols=69 Identities=14% Similarity=0.065 Sum_probs=53.9
Q ss_pred CCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCC
Q 042546 299 HDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNK 368 (671)
Q Consensus 299 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~g~~ 368 (671)
.+....+.-++.+...|+-|+-.+++.++.. +.+|+....-.+..+|.+.|+..+|.+++.+.-+.|++
T Consensus 89 ~~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 89 TLNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred chHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 4556667777888888888888888888533 34678888888889999999999999999888877764
No 231
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=88.64 E-value=4 Score=38.19 Aligned_cols=92 Identities=9% Similarity=0.113 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-CCH
Q 042546 424 MGECNKILKAMEEGGFIAS---SNMKSKIAFRLSSA-----GKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVA-GDL 494 (671)
Q Consensus 424 ~~~A~~~~~~m~~~g~~~~---~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~-g~~ 494 (671)
...|...+++..+. .|+ ...|..+...|.+. |+.++|.+.|++..+.+..-+..++......++.. |+.
T Consensus 179 l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 179 VHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 35566666666654 344 45777788888774 88888888888887764322366666777777774 888
Q ss_pred HHHHHHHHHHHHcCCCC--CCHHHHH
Q 042546 495 DKAADCFQKMVEKEGTS--HAGYAID 518 (671)
Q Consensus 495 ~~a~~~~~~m~~~~g~~--p~~~~~~ 518 (671)
+++.+.+++... .... |+....+
T Consensus 257 ~~a~~~L~kAL~-a~p~~~P~~~lan 281 (301)
T 3u64_A 257 AGFDEALDRALA-IDPESVPHNKLLV 281 (301)
T ss_dssp HHHHHHHHHHHH-CCGGGCSSCHHHH
T ss_pred HHHHHHHHHHHc-CCCCCCCChhHHH
Confidence 888888888877 5555 6644433
No 232
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=88.44 E-value=7 Score=42.33 Aligned_cols=54 Identities=13% Similarity=0.130 Sum_probs=48.9
Q ss_pred HHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhch
Q 042546 590 KYVSKSGTSDDAIAFLKGMTSKRFPSMSVVLCLFAAFFQARRHSEAQDLLSKCP 643 (671)
Q Consensus 590 ~~l~~~g~~~~A~~~~~~m~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 643 (671)
..|-..|+++.|+++-++.....|-+..+|..|..+|.+.|+++.|+-.++.||
T Consensus 345 ~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 345 NFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 344567999999999999988777889999999999999999999999999998
No 233
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=87.18 E-value=21 Score=33.92 Aligned_cols=132 Identities=11% Similarity=0.102 Sum_probs=68.8
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH-HHHHHHHHHH----HCC--CCCCHHHHHHHHHHHHhcCCHHHHHH
Q 042546 392 FSKVVRVFRENGNVLTDAMLNSVLKALISVGRMG-ECNKILKAME----EGG--FIASSNMKSKIAFRLSSAGKKDEANE 464 (671)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~-~A~~~~~~m~----~~g--~~~~~~~~~~li~~~~~~g~~~~A~~ 464 (671)
+.-+++.+.+.+.+++......++..+.....-+ .=.++.+.+. +.| -.-|......+...|.+.|++.+|+.
T Consensus 76 a~llvev~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~ 155 (312)
T 2wpv_A 76 IFYLLEVYDLAEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAER 155 (312)
T ss_dssp HHHHHHHHHHTTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHH
Confidence 3334444444555555555555554444422111 1122333332 222 12466777888888888999988888
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 042546 465 FMDHMEASGSDVGDKMWVSLIKGHCVA---GDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCV 541 (671)
Q Consensus 465 ~~~~m~~~g~~~~~~~~~~li~~~~~~---g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 541 (671)
.|-. |-.-|...+..++.-+... |...++ |...-.+++. |.-.|++..|..+|+...
T Consensus 156 H~i~----~~~~s~~~~a~~l~~w~~~~~~~~~~e~---------------dlf~~RaVL~-yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 156 YFML----GTHDSMIKYVDLLWDWLCQVDDIEDSTV---------------AEFFSRLVFN-YLFISNISFAHESKDIFL 215 (312)
T ss_dssp HHHT----SCHHHHHHHHHHHHHHHHHTTCCCHHHH---------------HHHHHHHHHH-HHHTTBHHHHHHHHHHHH
T ss_pred HHHh----CCCccHHHHHHHHHHHHHhcCCCCcchH---------------HHHHHHHHHH-HHHhcCHHHHHHHHHHHH
Confidence 7641 1111345555555544443 433332 2222333443 345688888888888776
Q ss_pred Hh
Q 042546 542 RE 543 (671)
Q Consensus 542 ~~ 543 (671)
++
T Consensus 216 ~~ 217 (312)
T 2wpv_A 216 ER 217 (312)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 234
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=86.53 E-value=6.6 Score=32.48 Aligned_cols=104 Identities=16% Similarity=0.111 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHhcCCH------HHHHHHHHHHHHCCCCCCH-HHHHHHHHH------HHhcCCHHHHHHHHHHHHHCCC
Q 042546 408 DAMLNSVLKALISVGRM------GECNKILKAMEEGGFIASS-NMKSKIAFR------LSSAGKKDEANEFMDHMEASGS 474 (671)
Q Consensus 408 ~~~~~~li~~~~~~g~~------~~A~~~~~~m~~~g~~~~~-~~~~~li~~------~~~~g~~~~A~~~~~~m~~~g~ 474 (671)
..+|-..+...-+.|+. ++..++|++.... ++|+. ..|...|.. +...+++++|.++|+.+...+
T Consensus 13 yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~h- 90 (161)
T 4h7y_A 13 PEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARANC- 90 (161)
T ss_dssp HHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh-
Confidence 34455555555555665 5666666665542 23331 111111111 112356666666666665432
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCH
Q 042546 475 DVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAG 514 (671)
Q Consensus 475 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~ 514 (671)
+-=...|.....-=.+.|+++.|.+++..... .+.+|..
T Consensus 91 KkFAKiwi~~AqFEiRqgnl~kARkILg~AiG-~~~k~~~ 129 (161)
T 4h7y_A 91 KKFAFVHISFAQFELSQGNVKKSKQLLQKAVE-RGAVPLE 129 (161)
T ss_dssp TTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-TTCBCHH
T ss_pred HHHHHHHHHHHHHHHHcccHHHHHHHHHHHhc-cCCCcHH
Confidence 11144444444444566666666666666665 5544443
No 235
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=86.47 E-value=34 Score=36.21 Aligned_cols=286 Identities=8% Similarity=0.035 Sum_probs=0.0
Q ss_pred HHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 042546 343 LGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVG 422 (671)
Q Consensus 343 i~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 422 (671)
.....+.|+++.+.++-..+....+.|-. .|..+...+......+...+..-. .+.+.....-+.-+..+.+.+
T Consensus 13 a~~a~~~~~~~~~~~l~~~l~~~pL~~yl-~y~~l~~~l~~~~~~ev~~Fl~~~-----~~~p~~~~Lr~~~l~~l~~~~ 86 (618)
T 1qsa_A 13 IKQAWDNRQMDVVEQMMPGLKDYPLYPYL-EYRQITDDLMNQPAVTVTNFVRAN-----PTLPPARTLQSRFVNELARRE 86 (618)
T ss_dssp HHHHHHTTCHHHHHHHSGGGTTSTTHHHH-HHHHHHHTGGGCCHHHHHHHHHHC-----TTCHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHCCCHHHHHHHHHhhcCCCcHHHH-HHHHHHhCcccCCHHHHHHHHHHC-----CCChhHHHHHHHHHHHHHhCC
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 042546 423 RMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQ 502 (671)
Q Consensus 423 ~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 502 (671)
++......+.. . +.+...-.....+....|+.++|......+-..| ......+..++..+.+.|.+.... ++.
T Consensus 87 ~w~~~l~~~~~-~----p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~-~~~p~~c~~l~~~~~~~g~lt~~~-~~~ 159 (618)
T 1qsa_A 87 DWRGLLAFSPE-K----PGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG-KSQPNACDKLFSVWRASGKQDPLA-YLE 159 (618)
T ss_dssp CHHHHHHHCCS-C----CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS-SCCCTHHHHHHHHHHHTTCSCHHH-HHH
T ss_pred CHHHHHHhccC-C----CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC-CCCcHHHHHHHHHHHHCCCCCHHH-HHH
Q ss_pred HHHH-----------------------------------------cCCCCCCHHHHHHHHHHHHh--cCCHHHHHHHHHH
Q 042546 503 KMVE-----------------------------------------KEGTSHAGYAIDLLVNTYCS--KNRAIDACKFVHN 539 (671)
Q Consensus 503 ~m~~-----------------------------------------~~g~~p~~~~~~~li~~~~~--~g~~~~A~~~~~~ 539 (671)
+|.. .....|+...-..++.++.+ ..+.+.|...+..
T Consensus 160 R~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~rlar~d~~~A~~~~~~ 239 (618)
T 1qsa_A 160 RIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANNPNTVLTFARTTGATDFTRQMAAVAFASVARQDAENARLMIPS 239 (618)
T ss_dssp HHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHCGGGHHHHHHHSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHhChHhHHHHHhccCCChhhHHHHHHHHHHHHhcCHHHHHHHHHh
Q ss_pred HHHhCCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH-HHHHHhcCChHHHHHHHHHhhhCCCCCH
Q 042546 540 CVREYDLKPWHT--TYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPF-IKYVSKSGTSDDAIAFLKGMTSKRFPSM 616 (671)
Q Consensus 540 m~~~~~~~p~~~--~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~t~-~~~l~~~g~~~~A~~~~~~m~~~~~p~~ 616 (671)
..+...+.+... .+..+...+...+...++...+..........+..-+ +..-.+.|+++.|...|+.|........
T Consensus 240 ~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~r~Alr~~d~~~a~~~~~~l~~~~~~~~ 319 (618)
T 1qsa_A 240 LAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTSLIERRVRMALGTGDRRGLNTWLARLPMEAKEKD 319 (618)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHTCHHHHHHHHHHSCTTGGGSH
T ss_pred hhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccCCChHHHHHHHHHHHHCCCHHHHHHHHHHccccccccH
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHh
Q 042546 617 SVVLCLFAAFFQARRHSEAQDLLSK 641 (671)
Q Consensus 617 ~~~~~l~~~~~~~g~~~~A~~~~~~ 641 (671)
.-.-=+..++.+.|+.++|..+|.+
T Consensus 320 r~~YW~~ra~~~~g~~~~a~~~~~~ 344 (618)
T 1qsa_A 320 EWRYWQADLLLERGREAEAKEILHQ 344 (618)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHcCCHHHHHHHHHH
No 236
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=86.14 E-value=6.7 Score=36.71 Aligned_cols=95 Identities=8% Similarity=0.095 Sum_probs=73.7
Q ss_pred ChHHHHHHHHHHHHcCCCCCC---HHHHHHHHHHHHc-----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhC-C
Q 042546 280 EPKKALIFFRWAEESGFVKHD---ESSYNAMASVLGR-----EDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSER-N 350 (671)
Q Consensus 280 ~~~~A~~~f~~~~~~~~~~~~---~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~-g 350 (671)
....|...+++..+- .|+ ...|..+...|.+ .|+.++|.+.|++..+.+-.-+..++......+++. |
T Consensus 178 ~l~~A~a~lerAleL---DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~g 254 (301)
T 3u64_A 178 TVHAAVMMLERACDL---WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLN 254 (301)
T ss_dssp HHHHHHHHHHHHHHH---CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTT
T ss_pred hHHHHHHHHHHHHHh---CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcC
Confidence 345666777766653 566 6789999999999 499999999999999874222478888888888885 9
Q ss_pred ChHHHHHHHHHHHhCCCC--CCHHHHHHH
Q 042546 351 MVKEAVDLYEFAMACKNK--PSVNCCTFL 377 (671)
Q Consensus 351 ~~~~a~~l~~~m~~~g~~--p~~~~~~~l 377 (671)
+.+++.+.+++.+..... |+....+.+
T Consensus 255 d~~~a~~~L~kAL~a~p~~~P~~~lan~~ 283 (301)
T 3u64_A 255 NRAGFDEALDRALAIDPESVPHNKLLVIL 283 (301)
T ss_dssp CHHHHHHHHHHHHHCCGGGCSSCHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCCCCCChhHHHHH
Confidence 999999999999987766 766554443
No 237
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=85.30 E-value=13 Score=36.74 Aligned_cols=75 Identities=15% Similarity=0.077 Sum_probs=60.6
Q ss_pred HHHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhchHhhh------ccHHHHHHHHhhhc
Q 042546 588 FIKYVSKSGTSDDAIAFLKGMTSKRFPSMSVVLCLFAAFFQARRHSEAQDLLSKCPRYVR------NHADVLNLLYSKKS 661 (671)
Q Consensus 588 ~~~~l~~~g~~~~A~~~~~~m~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~------~~~~~~~l~~~m~~ 661 (671)
++..+...|+.++|...+..+....+.+...|..++.+|.+.|+..+|.+.|++...... ..++..+++..+..
T Consensus 177 ~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l~~~il~ 256 (388)
T 2ff4_A 177 KAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALNERILR 256 (388)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHc
Confidence 345566889999999999999888888999999999999999999999999998765432 34566677766654
Q ss_pred C
Q 042546 662 G 662 (671)
Q Consensus 662 ~ 662 (671)
.
T Consensus 257 ~ 257 (388)
T 2ff4_A 257 Q 257 (388)
T ss_dssp T
T ss_pred C
Confidence 3
No 238
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=85.08 E-value=34 Score=34.50 Aligned_cols=50 Identities=22% Similarity=0.219 Sum_probs=34.6
Q ss_pred CCHHHHHHHHHHHHHC-----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 042546 422 GRMGECNKILKAMEEG-----GFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEA 471 (671)
Q Consensus 422 g~~~~A~~~~~~m~~~-----g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 471 (671)
|+++.|.+.+-.+.+. +..........++..|.+.|+++...+.+..+..
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lsk 84 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSK 84 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 6778888777666542 2344566677788888888888887777766543
No 239
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=84.54 E-value=4.2 Score=32.55 Aligned_cols=18 Identities=17% Similarity=0.122 Sum_probs=7.5
Q ss_pred HHhcCCHHHHHHHHHHHH
Q 042546 524 YCSKNRAIDACKFVHNCV 541 (671)
Q Consensus 524 ~~~~g~~~~A~~~~~~m~ 541 (671)
+.+.|++++|.+.++.+.
T Consensus 84 ~yklg~Y~~A~~~~~~lL 101 (126)
T 1nzn_A 84 NYRLKEYEKALKYVRGLL 101 (126)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHhhhHHHHHHHHHHHH
Confidence 334444444444444443
No 240
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=82.93 E-value=5.9 Score=39.35 Aligned_cols=68 Identities=15% Similarity=0.142 Sum_probs=43.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHHH
Q 042546 412 NSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEA-----SGSDVGDKM 480 (671)
Q Consensus 412 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~~~~~~ 480 (671)
..++..+...|+.++|...+..+.... +-+...|..+|.+|.+.|+..+|++.|+...+ .|+.|+..+
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 445566667777777777666665543 44666777777777777777777777766542 366665443
No 241
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=82.29 E-value=67 Score=35.69 Aligned_cols=260 Identities=8% Similarity=0.032 Sum_probs=132.0
Q ss_pred HHHHccCChHHHHHHHHHHHHcCCCCCHHHH--HHHHHHHHhCCChHHHHHHHHHHHhCCC-------CCCHHHHHHHHH
Q 042546 309 SVLGREDCIDRFWKVLDEMRSKGYEMEMETC--VKVLGRFSERNMVKEAVDLYEFAMACKN-------KPSVNCCTFLLR 379 (671)
Q Consensus 309 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~--~~li~~~~~~g~~~~a~~l~~~m~~~g~-------~p~~~~~~~ll~ 379 (671)
-|....|+.++++.+++.....+-..+..+- ..+--+....|..+++.+++.......- .+....-.++=-
T Consensus 382 LGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGL 461 (963)
T 4ady_A 382 LGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGI 461 (963)
T ss_dssp HHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHH
T ss_pred hhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHH
Confidence 3466778888887777665432111233322 2333445566666677777666553211 011111222222
Q ss_pred HHHhcCcccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH--HHHhcC
Q 042546 380 KIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAF--RLSSAG 457 (671)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~--~~~~~g 457 (671)
+++..|..+.+....+...+...........--+|-..+.-.|+-+-...++..+.+. .+..+...+.- ++...|
T Consensus 462 Gla~~GS~~eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~---~~e~vrR~aalgLGll~~g 538 (963)
T 4ady_A 462 GLAAMGSANIEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQET---QHGNITRGLAVGLALINYG 538 (963)
T ss_dssp HHHSTTCCCHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHC---SCHHHHHHHHHHHHHHTTT
T ss_pred HHHhcCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhcc---CcHHHHHHHHHHHHhhhCC
Confidence 2333444454444444444432221000011112223344556766667777766543 23333333333 344678
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHH-HH---HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 042546 458 KKDEANEFMDHMEASGSDVGDKM-WV---SLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDA 533 (671)
Q Consensus 458 ~~~~A~~~~~~m~~~g~~~~~~~-~~---~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A 533 (671)
+.+.+..+.+.+... .|... |. ++.-+|+..|+.....+++..+.+ . ...++.-...+--+....|+.+.+
T Consensus 539 ~~e~~~~li~~L~~~---~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~-d-~~d~VRraAViaLGlI~~g~~e~v 613 (963)
T 4ady_A 539 RQELADDLITKMLAS---DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVS-D-SNDDVRRAAVIALGFVLLRDYTTV 613 (963)
T ss_dssp CGGGGHHHHHHHHHC---SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-C-SCHHHHHHHHHHHHHHTSSSCSSH
T ss_pred ChHHHHHHHHHHHhC---CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhcc-C-CcHHHHHHHHHHHHhhccCCHHHH
Confidence 888888888887763 33332 33 233456777888777778888876 2 222333222222344446666667
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHh
Q 042546 534 CKFVHNCVREYDLKPWHTTYEELIKNLLVQRGF-KDALSLLCLMKD 578 (671)
Q Consensus 534 ~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~-~~A~~l~~~m~~ 578 (671)
.+++..+.+ ...|.+.--.++.-|....|.. .+|++++..+..
T Consensus 614 ~rlv~~L~~--~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~ 657 (963)
T 4ady_A 614 PRIVQLLSK--SHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK 657 (963)
T ss_dssp HHHTTTGGG--CSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT
T ss_pred HHHHHHHHh--cCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc
Confidence 777766654 2345544444444455545443 567778887763
No 242
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=82.19 E-value=7.2 Score=42.21 Aligned_cols=55 Identities=13% Similarity=-0.005 Sum_probs=45.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 042546 415 LKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHME 470 (671)
Q Consensus 415 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 470 (671)
.+.+...|+++.|+++-++....- +-+-.+|..|..+|.+.|+++.|+-.++.+.
T Consensus 344 a~FLl~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 344 TNFLLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHHhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 344567899999999999887654 4567899999999999999999999988763
No 243
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=81.43 E-value=22 Score=29.46 Aligned_cols=64 Identities=8% Similarity=0.061 Sum_probs=47.5
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 042546 421 VGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIK 486 (671)
Q Consensus 421 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~ 486 (671)
.+++++|.++|+.+.+.+ +.=...|-....--.+.|++..|.+++......+.+| .....+.|.
T Consensus 73 i~D~d~aR~vy~~a~~~h-KkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~-~~~le~a~~ 136 (161)
T 4h7y_A 73 IQEPDDARDYFQMARANC-KKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP-LEMLEIALR 136 (161)
T ss_dssp HHCGGGCHHHHHHHHHHC-TTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC-HHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc-HHHHHHHHH
Confidence 378999999999987653 2227777777777788999999999999998877554 333444433
No 244
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=80.37 E-value=17 Score=27.59 Aligned_cols=63 Identities=13% Similarity=0.057 Sum_probs=42.0
Q ss_pred CHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 042546 493 DLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIK 558 (671)
Q Consensus 493 ~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~ 558 (671)
+.-+..+-++.+.. ..+.|+..+..+.+.+|.+.+++.-|.++|+.++.|.+- ...+|..+++
T Consensus 25 D~~e~rrglN~l~~-~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~--~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVG-YDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGP--HKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTT-SSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTT--CTTHHHHHHH
T ss_pred cHHHHHHHHHHHhc-cccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC--chhhHHHHHH
Confidence 44455666666666 667777777777777777777777777777777766433 3345666554
No 245
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=80.17 E-value=48 Score=32.67 Aligned_cols=162 Identities=12% Similarity=-0.042 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHH---HHHHHHHHHhcCC-----HHHHHHHHHHHHHhCCCCCC
Q 042546 478 DKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYA---IDLLVNTYCSKNR-----AIDACKFVHNCVREYDLKPW 549 (671)
Q Consensus 478 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~---~~~li~~~~~~g~-----~~~A~~~~~~m~~~~~~~p~ 549 (671)
......+...|.+.|+.++..+++...+.-.+.-|-..| ...||+.+....+ ++-..+.++....+...-..
T Consensus 19 e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr 98 (394)
T 3txn_A 19 EQGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLR 98 (394)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH--------HHHHHhcCChHHHHHHHHHhhh---CCCCCHHH
Q 042546 550 HTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPF--------IKYVSKSGTSDDAIAFLKGMTS---KRFPSMSV 618 (671)
Q Consensus 550 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~t~--------~~~l~~~g~~~~A~~~~~~m~~---~~~p~~~~ 618 (671)
...=.-+...|...|++.+|.+++.++.+.--..|..++ +.+|...+++..+..++..... ...+++..
T Consensus 99 ~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i 178 (394)
T 3txn_A 99 QSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKV 178 (394)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHH
Q ss_pred ----HHHHHHHHH-HcCCHHHHHHHH
Q 042546 619 ----VLCLFAAFF-QARRHSEAQDLL 639 (671)
Q Consensus 619 ----~~~l~~~~~-~~g~~~~A~~~~ 639 (671)
..+-...+. ..++|.+|...|
T Consensus 179 ~a~i~~~~Gi~~l~~~rdyk~A~~~F 204 (394)
T 3txn_A 179 QGALDLQSGILHAADERDFKTAFSYF 204 (394)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHhhHHHHHhccCHHHHHHHH
No 246
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=80.06 E-value=17 Score=27.53 Aligned_cols=64 Identities=11% Similarity=0.171 Sum_probs=38.7
Q ss_pred cccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 042546 386 QLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIA 450 (671)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li 450 (671)
..|.-.+.+-++.+....+.|++.+..+.+.+|-+.+++..|.++|+-.+.+- .....+|..++
T Consensus 23 ~iD~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~-~~~~~iY~~~l 86 (109)
T 1v54_E 23 DIDAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVI 86 (109)
T ss_dssp TCCHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHH
T ss_pred CccHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCchhhHHHHH
Confidence 33444455555555566677777777777777777777777777777666432 12233455444
No 247
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=78.36 E-value=26 Score=28.60 Aligned_cols=78 Identities=13% Similarity=0.021 Sum_probs=49.6
Q ss_pred HHHHHHhcCC---hHHHHHHHHHhhhCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHhchHhhhccHHHHHH----HHhh
Q 042546 588 FIKYVSKSGT---SDDAIAFLKGMTSKRFP-SMSVVLCLFAAFFQARRHSEAQDLLSKCPRYVRNHADVLNL----LYSK 659 (671)
Q Consensus 588 ~~~~l~~~g~---~~~A~~~~~~m~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~l----~~~m 659 (671)
|..+|.+... ..+++.+++.+.+..+. .....-.|.-++.|.|++++|.++.+.+.+.-+....+..| -++|
T Consensus 45 YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~Lk~~Ie~~i 124 (144)
T 1y8m_A 45 YAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKSMVEDKI 124 (144)
T ss_dssp HHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Confidence 3555655544 45677788777765442 33444456678888888888888888877655555555544 4555
Q ss_pred hcCCCC
Q 042546 660 KSGGDS 665 (671)
Q Consensus 660 ~~~g~~ 665 (671)
.+.|+.
T Consensus 125 ~kdGli 130 (144)
T 1y8m_A 125 QKETLK 130 (144)
T ss_dssp HHTTTT
T ss_pred HHhchh
Confidence 566643
No 248
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=77.02 E-value=68 Score=37.00 Aligned_cols=52 Identities=8% Similarity=0.071 Sum_probs=31.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 042546 413 SVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHM 469 (671)
Q Consensus 413 ~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 469 (671)
.++..+.+.+..+.+.++.... +.+...--.+..+|...|++++|.+.|++.
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~-----~~~~~~~yl~g~~~L~~ge~~~A~~~F~ka 868 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWL-----NSDPIAVYLKALIYLKSKEAVKAVRCFKTT 868 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHS-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHTC
T ss_pred HHHHHHHHhhhHHHHHHHhhhc-----cCCcHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 4555566667666666544332 234444344556677788888888888654
No 249
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=76.73 E-value=54 Score=31.35 Aligned_cols=113 Identities=11% Similarity=0.049 Sum_probs=59.4
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHH----HHHHhCCCCCCHHHHHHHHH
Q 042546 304 YNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLY----EFAMACKNKPSVNCCTFLLR 379 (671)
Q Consensus 304 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~----~~m~~~g~~p~~~~~~~ll~ 379 (671)
|-++..-|.+.+++++|.+++..-.. .+.+.|+...|-++- +-..+.++++|..+...++.
T Consensus 38 ~RTi~~Ry~~~k~y~eAidLL~~GA~---------------~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~ 102 (336)
T 3lpz_A 38 TRLVAARYSKQGNWAAAVDILASVSQ---------------TLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLG 102 (336)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH---------------HHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHH
T ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHH---------------HHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 44555667778888888877654221 133345444443333 44445666777666666666
Q ss_pred HHHhcCcccH---HHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 042546 380 KIVVSKQLDM---RLFSKVVRVFRENG--NVLTDAMLNSVLKALISVGRMGECNKIL 431 (671)
Q Consensus 380 ~~~~~~~~~~---~~~~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~ 431 (671)
.+......+. ..+.+.+..-.+.| ..-|+.....+-..|.+.+++.+|..-|
T Consensus 103 L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 103 CLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp HHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 6655443221 22222222222222 2334555555666666666666666555
No 250
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=76.45 E-value=28 Score=28.00 Aligned_cols=63 Identities=14% Similarity=0.109 Sum_probs=44.2
Q ss_pred CHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 042546 493 DLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIK 558 (671)
Q Consensus 493 ~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~ 558 (671)
+.-+..+-++.+.. ..+.|+..+..+.+.+|-+.+++..|.++|+.++.|.+ +....|..+++
T Consensus 68 D~wElrrglN~l~~-~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~--~~~~iY~y~lq 130 (152)
T 2y69_E 68 DAWELRKGMNTLVG-YDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG--PHKEIYPYVIQ 130 (152)
T ss_dssp CHHHHHHHHHHHTT-SSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT--TCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhc-cccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcC--CchhhHHHHHH
Confidence 34445555666666 66778888888888888888888888888888877643 33456666654
No 251
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=75.83 E-value=0.0012 Score=65.71 Aligned_cols=153 Identities=14% Similarity=0.088 Sum_probs=88.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 042546 410 MLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHC 489 (671)
Q Consensus 410 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~ 489 (671)
.|..+|.+..+.|.+++-.+.+...++. ..+...=+.|+-+|++.++..+-.+++. .||..-...+.+-|.
T Consensus 85 ~y~eVi~~A~~~~~~edLv~yL~MaRk~--~ke~~IDteLi~ayAk~~rL~elEefl~-------~~N~A~iq~VGDrcf 155 (624)
T 3lvg_A 85 SYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCY 155 (624)
T ss_dssp SSSHHHHHTTTSSCCTTHHHHHHTTSTT--CCSTTTTHHHHHHHHTSCSSSTTTSTTS-------CCSSSCTHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccHHHHHHHHHhhCcHHHHHHHHc-------CCCcccHHHHHHHHH
Confidence 3666777777777777777766655443 2344455678888888887766555442 466666666777777
Q ss_pred hcCCHHHHHHHHHHHHHc-------------------CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCH
Q 042546 490 VAGDLDKAADCFQKMVEK-------------------EGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWH 550 (671)
Q Consensus 490 ~~g~~~~a~~~~~~m~~~-------------------~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~ 550 (671)
..|.++.|.-+|..+..- ..-.-+..||-.+-.+|...+.+.-|...--.+.-. ||
T Consensus 156 ~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~~ACvd~~EfrLAqicGLniIvh----ad- 230 (624)
T 3lvg_A 156 DEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH----AD- 230 (624)
T ss_dssp HSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC----SS-
T ss_pred HccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHhCchHHHHHHHhcchhccc----HH-
Confidence 777777777666655330 001123445666666666666655554443333321 11
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 042546 551 TTYEELIKNLLVQRGFKDALSLLCLMK 577 (671)
Q Consensus 551 ~~~~~li~~~~~~g~~~~A~~l~~~m~ 577 (671)
....++.-|-..|.+++-+.+++.-.
T Consensus 231 -eL~elv~~YE~~G~f~ELIsLlEagl 256 (624)
T 3lvg_A 231 -ELEELINYYQDRGYFEELITMLEAAL 256 (624)
T ss_dssp -CCSGGGSSSSTTCCCTTSTTTHHHHT
T ss_pred -HHHHHHHHHHhCCCHHHHHHHHHHHh
Confidence 11234555666666666666666544
No 252
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=75.51 E-value=22 Score=26.84 Aligned_cols=55 Identities=15% Similarity=0.240 Sum_probs=30.8
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH-HhcCChHHHHHHHHHhhhCCCCCHH
Q 042546 559 NLLVQRGFKDALSLLCLMKDHGFPPFVDPFIKYV-SKSGTSDDAIAFLKGMTSKRFPSMS 617 (671)
Q Consensus 559 ~~~~~g~~~~A~~l~~~m~~~~~~p~~~t~~~~l-~~~g~~~~A~~~~~~m~~~~~p~~~ 617 (671)
.+...|++++|..+.+.+ ..||...+...+ .+.|..+++..-+..+..++.|...
T Consensus 49 SLmNrG~Yq~Al~l~~~~----c~pdlepw~ALce~rlGl~s~le~rL~~la~sg~p~~q 104 (116)
T 2p58_C 49 SLMNRGDYASALQQGNKL----AYPDLEPWLALCEYRLGLGSALESRLNRLARSQDPRIQ 104 (116)
T ss_dssp HHHHTTCHHHHHHHHTTS----CCGGGHHHHHHHHHHHTCHHHHHHHHHHHTTCCCHHHH
T ss_pred HHHcchhHHHHHHhcCCC----CCchHHHHHHHHHHhcccHHHHHHHHHHHHhCCCHHHH
Confidence 345566666666655443 356666665555 3566666666666555555444433
No 253
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=74.08 E-value=1.1e+02 Score=33.87 Aligned_cols=207 Identities=8% Similarity=0.055 Sum_probs=113.0
Q ss_pred HHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH--HHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCccc
Q 042546 311 LGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGR--FSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLD 388 (671)
Q Consensus 311 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~--~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~ 388 (671)
+.-.|+-+-...++..+.+.. +......+.-+ +.-.|+.+.+..+.+.+... ..|....-.++.-+++..|..+
T Consensus 500 ~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~-~dp~vRygaa~alglAyaGTGn 575 (963)
T 4ady_A 500 MLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINYGRQELADDLITKMLAS-DESLLRYGGAFTIALAYAGTGN 575 (963)
T ss_dssp HTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHC-SCHHHHHHHHHHHHHHTTTSCC
T ss_pred hcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHhcCCCC
Confidence 456677777777777766531 33333333333 44678888888888887653 2344444445666777777777
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHH--HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH-HHHHHH
Q 042546 389 MRLFSKVVRVFRENGNVLTDAMLNSVLK--ALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKK-DEANEF 465 (671)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~li~--~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~-~~A~~~ 465 (671)
...+.++++.+.... +..+-...+- ++...|+.+.+.++++.+.+.+ .|.+..-..+.-+....|.. .++.++
T Consensus 576 ~~aIq~LL~~~~~d~---~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~ 651 (963)
T 4ady_A 576 NSAVKRLLHVAVSDS---NDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDV 651 (963)
T ss_dssp HHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHH
T ss_pred HHHHHHHHHHhccCC---cHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHH
Confidence 777777777776532 2222223333 3334666666677776655543 45544444555555555554 577778
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcC---------CHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcC
Q 042546 466 MDHMEASGSDVGDKMWVSLIKGHCVAG---------DLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKN 528 (671)
Q Consensus 466 ~~~m~~~g~~~~~~~~~~li~~~~~~g---------~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g 528 (671)
+..+.. .+|..+-...+.+++..| ++...++.+.....+..-.++......+..+....|
T Consensus 652 L~~L~~---D~d~~Vrq~Ai~ALG~Ig~gtnna~~~rva~~l~~L~~~~~dk~~d~~~~fga~iAqGll~aG 720 (963)
T 4ady_A 652 LDPLTK---DPVDFVRQAAMIALSMILIQQTEKLNPQVADINKNFLSVITNKHQEGLAKFGACVAQGIMNAG 720 (963)
T ss_dssp HHHHHT---CSSHHHHHHHHHHHHHHSTTCCTTTCTTHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHTTG
T ss_pred HHHHcc---CCCHHHHHHHHHHHHHHhcCCccccchHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhcC
Confidence 888765 455555444444443332 334444443333331223344444444555555444
No 254
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=73.20 E-value=31 Score=29.05 Aligned_cols=133 Identities=11% Similarity=0.070 Sum_probs=67.7
Q ss_pred CCCCCCHHHHH--HHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 042546 508 EGTSHAGYAID--LLVNTYCSKNRAIDACKFVHNCVREYDLKPWH-------TTYEELIKNLLVQRGFKDALSLLCLMKD 578 (671)
Q Consensus 508 ~g~~p~~~~~~--~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~-------~~~~~li~~~~~~g~~~~A~~l~~~m~~ 578 (671)
.|+.|....|+ .=+..+...|.++.|.-+.+-+..-.+..|+. .++..+.+++...|++.+|...|++..+
T Consensus 12 ~~~~~~~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq 91 (167)
T 3ffl_A 12 SGLVPRGSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ 91 (167)
T ss_dssp ---------CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCCCCCccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 45555554433 23455677888888887777654432334442 2555666778888888888888887542
Q ss_pred CC-CCCCHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhchHhhhc
Q 042546 579 HG-FPPFVDPFIKYVSKSGTSDDAIAFLKGMTSKRFPSMSVVLCLFAAFFQARRHSEAQDLLSKCPRYVRN 648 (671)
Q Consensus 579 ~~-~~p~~~t~~~~l~~~g~~~~A~~~~~~m~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 648 (671)
.. .-|...+............. ......+.+.---+..+|.+.|++++|+.+++.+|...+.
T Consensus 92 ~~k~l~k~~s~~~~~~~~ss~p~--------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k~Rt 154 (167)
T 3ffl_A 92 QKKALSKTSKVRPSTGNSASTPQ--------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSRQRT 154 (167)
T ss_dssp HHHCC----------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGGGCC
T ss_pred HHHHHhcCCCccccccccCCCcc--------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCchhcC
Confidence 11 11111100000000000000 0011123344444788899999999999999999865443
No 255
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=72.77 E-value=24 Score=26.66 Aligned_cols=46 Identities=11% Similarity=0.117 Sum_probs=20.7
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 042546 454 SSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMV 505 (671)
Q Consensus 454 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 505 (671)
...|++++|..+.+.+. .||...|-++-. .+.|..+++...+.++.
T Consensus 51 mNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~rL~~la 96 (116)
T 2p58_C 51 MNRGDYASALQQGNKLA----YPDLEPWLALCE--YRLGLGSALESRLNRLA 96 (116)
T ss_dssp HHTTCHHHHHHHHTTSC----CGGGHHHHHHHH--HHHTCHHHHHHHHHHHT
T ss_pred HcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHHHHHHH
Confidence 34555555554443332 455555544432 34444444444444443
No 256
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=72.44 E-value=33 Score=27.63 Aligned_cols=60 Identities=10% Similarity=0.139 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 042546 390 RLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIA 450 (671)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li 450 (671)
-.+.+-++.+....+.|++.+..+.+.+|-+.+++..|.++|+-.+.+- .+...+|..++
T Consensus 70 wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~-~~~~~iY~y~l 129 (152)
T 2y69_E 70 WELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVI 129 (152)
T ss_dssp HHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHH
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CCchhhHHHHH
Confidence 3444455555555666777777777777777777777777777665432 12233454444
No 257
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=70.85 E-value=21 Score=32.80 Aligned_cols=49 Identities=22% Similarity=0.210 Sum_probs=24.6
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHhcCChHHHHHHHHHhhh
Q 042546 560 LLVQRGFKDALSLLCLMKDHGFPPFV----DPFIKYVSKSGTSDDAIAFLKGMTS 610 (671)
Q Consensus 560 ~~~~g~~~~A~~l~~~m~~~~~~p~~----~t~~~~l~~~g~~~~A~~~~~~m~~ 610 (671)
..+.|.+++|++....-.+. .|.. ..++..||-.|+++.|.+-++...+
T Consensus 7 ll~~g~L~~al~~~~~~VR~--~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~ 59 (273)
T 1zbp_A 7 ALSEGQLQQALELLIEAIKA--SPKDASLRSSFIELLCIDGDFERADEQLMQSIK 59 (273)
T ss_dssp HTTTTCHHHHHHHHHHHHHT--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 34455555555555544433 2332 2235555556666665555555544
No 258
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=70.50 E-value=21 Score=26.87 Aligned_cols=55 Identities=18% Similarity=0.223 Sum_probs=30.6
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH-HhcCChHHHHHHHHHhhhCCCCCHH
Q 042546 559 NLLVQRGFKDALSLLCLMKDHGFPPFVDPFIKYV-SKSGTSDDAIAFLKGMTSKRFPSMS 617 (671)
Q Consensus 559 ~~~~~g~~~~A~~l~~~m~~~~~~p~~~t~~~~l-~~~g~~~~A~~~~~~m~~~~~p~~~ 617 (671)
.+...|++++|..+.+.+ ..||...+...+ .+.|..+++..-+..+..++.|...
T Consensus 48 SLmNrG~Yq~Al~l~~~~----c~pdlepw~ALce~rlGl~s~le~rL~~la~sg~p~~q 103 (115)
T 2uwj_G 48 SLANQGRYQEALAFAHGN----PWPALEPWFALCEWHLGLGAALDRRLAGLGGSSDPALA 103 (115)
T ss_dssp HHHHTTCHHHHHGGGTTC----CCGGGHHHHHHHHHHTTCHHHHHHHHHHHHTCSSHHHH
T ss_pred HHHcchhHHHHHHhcCCC----CCchHHHHHHHHHHhcccHHHHHHHHHHHHhCCCHHHH
Confidence 345566666666654443 356666665555 3566666666666555555444333
No 259
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=70.49 E-value=80 Score=30.55 Aligned_cols=116 Identities=21% Similarity=0.232 Sum_probs=67.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHhCCCCCCHHHHHHHHHh
Q 042546 517 IDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRG--FKDALSLLCLMKDHGFPPFVDPFIKYVSK 594 (671)
Q Consensus 517 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~--~~~A~~l~~~m~~~~~~p~~~t~~~~l~~ 594 (671)
...+|.-|...|+.++|.+.++++..- .+. ...+..++..++-+.++ .+...+++..+...|+-+. ..+..++.
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p-~fh-he~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~-~q~~~Gf~- 295 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVP-HFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITI-DQMKRGYE- 295 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCT-TCH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCH-HHHHHHHH-
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCC-cch-HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCH-HHHHHHHH-
Confidence 466888888899999999999988531 111 23445566666665443 3567788888887776443 34434433
Q ss_pred cCChHHHHHHHHHhhh--CCCCCHHHHH-HHHHHHHHcCCHHHHHHHHHhchHhh
Q 042546 595 SGTSDDAIAFLKGMTS--KRFPSMSVVL-CLFAAFFQARRHSEAQDLLSKCPRYV 646 (671)
Q Consensus 595 ~g~~~~A~~~~~~m~~--~~~p~~~~~~-~l~~~~~~~g~~~~A~~~~~~m~~~~ 646 (671)
++++.+.+ .+.|....|. .++.-+...|-... .+.+.||.++
T Consensus 296 --------~vl~~ldDl~lDiP~A~~~la~~varai~~g~l~~--~f~~~~p~r~ 340 (358)
T 3eiq_C 296 --------RIYNEIPDINLDVPHSYSVLERFVEECFQAGIISK--QLRDLCPSRG 340 (358)
T ss_dssp --------HHHHHHHHHHHHCTTHHHHHHHHHHHHHHHTSSCH--HHHTTCCCC-
T ss_pred --------HHHHhccHhhcccccHHHHHHHHHHHHHHCCCCCH--HHHHhCcccC
Confidence 23333333 2346655543 34445555555544 4566776543
No 260
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=70.22 E-value=23 Score=26.71 Aligned_cols=49 Identities=10% Similarity=-0.004 Sum_probs=20.5
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 042546 419 ISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASG 473 (671)
Q Consensus 419 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 473 (671)
...|++++|..+.+.+. .||...|-+|-. .+.|..+++..-+.++..+|
T Consensus 50 mNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~rL~~la~sg 98 (115)
T 2uwj_G 50 ANQGRYQEALAFAHGNP----WPALEPWFALCE--WHLGLGAALDRRLAGLGGSS 98 (115)
T ss_dssp HHTTCHHHHHGGGTTCC----CGGGHHHHHHHH--HHTTCHHHHHHHHHHHHTCS
T ss_pred HcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC
Confidence 34444444444443333 344444443322 23444444444444444333
No 261
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=70.11 E-value=92 Score=35.91 Aligned_cols=167 Identities=8% Similarity=0.017 Sum_probs=96.5
Q ss_pred HHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 042546 306 AMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSK 385 (671)
Q Consensus 306 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~ 385 (671)
.++..+.+.+..+-|.++.... +-+...--.+..+|...|++++|.+.|.+.- .|+..+.....
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~-----~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa-~~~~~~~~l~~---------- 880 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWL-----NSDPIAVYLKALIYLKSKEAVKAVRCFKTTS-LVLYSHTSQFA---------- 880 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHS-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCC-CSCTTCCCSCS----------
T ss_pred HHHHHHHHhhhHHHHHHHhhhc-----cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHh-hhhcccchhhh----------
Confidence 3455566666666665544332 2244444556677889999999999998753 23322211000
Q ss_pred cccHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHH
Q 042546 386 QLDMRLFSKVVRVFREN-GNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASS----NMKSKIAFRLSSAGKKD 460 (671)
Q Consensus 386 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~----~~~~~li~~~~~~g~~~ 460 (671)
.......+ .... ....-..-|.-++..+.+.+.++.+.++-....+..-..+. ..|..+..++...|+++
T Consensus 881 --~~~~~~~~---~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye 955 (1139)
T 4fhn_B 881 --VLREFQEI---AEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFD 955 (1139)
T ss_dssp --SHHHHHHH---HHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSG
T ss_pred --hhcccccc---cccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHH
Confidence 00000000 0000 11112234677778888888888888776665543212221 25788888888899999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 042546 461 EANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLD 495 (671)
Q Consensus 461 ~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~ 495 (671)
+|...+-.+..... -......++...|..|..+
T Consensus 956 ~Ay~aL~~~pd~~~--r~~cLr~LV~~lce~~~~~ 988 (1139)
T 4fhn_B 956 AAHVALMVLSTTPL--KKSCLLDFVNQLTKQGKIN 988 (1139)
T ss_dssp GGGHHHHHHHHSSS--CHHHHHHHHHHHHHHCCHH
T ss_pred HHHHHHHhCCCHHH--HHHHHHHHHHHHHhCCChh
Confidence 99888888876543 3455666777667666544
No 262
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=68.22 E-value=41 Score=27.04 Aligned_cols=67 Identities=15% Similarity=0.051 Sum_probs=40.4
Q ss_pred HHHHHhcCC---hHHHHHHHHHhhhCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHhchHhhhccHHHHHH
Q 042546 589 IKYVSKSGT---SDDAIAFLKGMTSKRF-PSMSVVLCLFAAFFQARRHSEAQDLLSKCPRYVRNHADVLNL 655 (671)
Q Consensus 589 ~~~l~~~g~---~~~A~~~~~~m~~~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~l 655 (671)
..++.+... ..+++.+++.+.+..+ .....+--|.-++.+.|++++|.+..+.+.+.-+....+..|
T Consensus 47 Aw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~L 117 (134)
T 3o48_A 47 AWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGAL 117 (134)
T ss_dssp HHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHH
Confidence 455555443 3457777777666443 234455556667778888888888777766544444444433
No 263
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=66.04 E-value=36 Score=28.64 Aligned_cols=24 Identities=4% Similarity=-0.050 Sum_probs=13.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHH
Q 042546 517 IDLLVNTYCSKNRAIDACKFVHNC 540 (671)
Q Consensus 517 ~~~li~~~~~~g~~~~A~~~~~~m 540 (671)
+..+.+++...|.+..|...|++.
T Consensus 66 l~~ladalf~~~eyrrA~~~y~qA 89 (167)
T 3ffl_A 66 LVYHADSLFHDKEYRNAVSKYTMA 89 (167)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHH
Confidence 344445555566666666666554
No 264
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=65.08 E-value=66 Score=31.15 Aligned_cols=64 Identities=11% Similarity=0.155 Sum_probs=31.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHcCCCC
Q 042546 446 KSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGD--LDKAADCFQKMVEKEGTS 511 (671)
Q Consensus 446 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~--~~~a~~~~~~m~~~~g~~ 511 (671)
.+.++.=|...|+.++|.+.++++..-.+. ..+...++..+.-+.++ .+...+++..+.+ .|+-
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p~fh-he~V~~av~~aLE~~~~~~re~~~~LL~~L~~-~gll 285 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWK-SSTI 285 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCTTCH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHH-TTCS
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCCcch-HHHHHHHHHHHHccCchHHHHHHHHHHHHHHH-CCCC
Confidence 455666666666666666666666421111 12333444444443322 3445555555555 4443
No 265
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=64.82 E-value=53 Score=26.40 Aligned_cols=70 Identities=14% Similarity=0.017 Sum_probs=39.2
Q ss_pred CCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 042546 403 GNVLTDAMLNSVLKALISVGR---MGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEAS 472 (671)
Q Consensus 403 ~~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 472 (671)
+-.|+..+--...-++.+..+ ..++..+++++.+.+-......+--|.-++.+.|++++|.+..+.+.+.
T Consensus 35 ~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~ 107 (134)
T 3o48_A 35 GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 107 (134)
T ss_dssp GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT
T ss_pred CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 334444444444445555444 3456667777665541122344455566677777777777777777654
No 266
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=62.98 E-value=1e+02 Score=29.09 Aligned_cols=170 Identities=11% Similarity=0.025 Sum_probs=101.3
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHH----HHHHHHhCCCCCCHHHHHHHH
Q 042546 303 SYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVD----LYEFAMACKNKPSVNCCTFLL 378 (671)
Q Consensus 303 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~----l~~~m~~~g~~p~~~~~~~ll 378 (671)
.|.++..-|.+.+++++|.+++..-.. .+.+.|+...|-+ +.+-..+.++.++..+...++
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~ga~---------------~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~ 99 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQGAL---------------SFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLV 99 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH---------------HHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHH---------------HHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 344566677888888888887654322 1334455544444 344445667888887777777
Q ss_pred HHHHhcCccc---HHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 042546 379 RKIVVSKQLD---MRLFSKVVRVFRENG--NVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRL 453 (671)
Q Consensus 379 ~~~~~~~~~~---~~~~~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~ 453 (671)
..+......+ ...+.+.++.-.+.| ..-|+.....+-..|.+.|++.+|..-|-. |-.-|...+..++.-+
T Consensus 100 ~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~----~~~~s~~~~a~~l~~w 175 (312)
T 2wpv_A 100 RLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFML----GTHDSMIKYVDLLWDW 175 (312)
T ss_dssp HHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHT----SCHHHHHHHHHHHHHH
T ss_pred HHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHh----CCCccHHHHHHHHHHH
Confidence 7776644323 234445555544443 335778888899999999999999987751 1011345555555544
Q ss_pred Hhc---CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 042546 454 SSA---GKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVE 506 (671)
Q Consensus 454 ~~~---g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 506 (671)
.+. |...++-- ..-.+++ .|.-.|++..|..+|+...+
T Consensus 176 ~~~~~~~~~~e~dl--------------f~~RaVL-~yL~l~n~~~A~~~~~~f~~ 216 (312)
T 2wpv_A 176 LCQVDDIEDSTVAE--------------FFSRLVF-NYLFISNISFAHESKDIFLE 216 (312)
T ss_dssp HHHTTCCCHHHHHH--------------HHHHHHH-HHHHTTBHHHHHHHHHHHHH
T ss_pred HHhcCCCCcchHHH--------------HHHHHHH-HHHHhcCHHHHHHHHHHHHH
Confidence 444 44433222 2122222 34566788888888887654
No 267
>1g1e_B SIN3A; four-helix bundle, protein-peptide complex, transcription; NMR {Mus musculus} SCOP: a.59.1.1 PDB: 1s5q_B 1s5r_B 2l9s_B
Probab=57.75 E-value=31 Score=25.54 Aligned_cols=64 Identities=11% Similarity=0.223 Sum_probs=45.6
Q ss_pred hHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHH--------------HHHHHHhchHhhhccHHHHHHHHhhhc
Q 042546 598 SDDAIAFLKGMTSKRFPSMSVVLCLFAAFFQARRHSE--------------AQDLLSKCPRYVRNHADVLNLLYSKKS 661 (671)
Q Consensus 598 ~~~A~~~~~~m~~~~~p~~~~~~~l~~~~~~~g~~~~--------------A~~~~~~m~~~~~~~~~~~~l~~~m~~ 661 (671)
+++|..+++.+..+...+...|...++.+.....-.. ..+++.++..-..++++.+.=|....-
T Consensus 10 ~~~A~~YvnkVK~rF~~~p~~Y~~FL~IL~~y~~~~~~~~~~~~~~~~~~~~~~V~~~V~~LF~~h~DLl~~F~~FLP 87 (89)
T 1g1e_B 10 FNHAINYVNKIKNRFQGQPDIYKAFLEILHTYQKEQRNAKEAGGNYTPALTEQEVYAQVARLFKNQEDLLSEFGQFLP 87 (89)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCSCCHHHHHHHHHHHTTTCHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHhccCccccccccccccccHHHHHHHHHHHHccCHHHHHHHHHHCc
Confidence 5789999999988765678888888877765432222 247777777777788888877766543
No 268
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=55.39 E-value=0.0065 Score=60.59 Aligned_cols=116 Identities=11% Similarity=0.056 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 042546 302 SSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKI 381 (671)
Q Consensus 302 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~ 381 (671)
..|..|-.+..+.+++.+|.+-|-+. -|...|..+|.+..+.|.+++-...+...++..-.|.+ =+.|+-+|
T Consensus 55 ~VWs~LgkAqL~~~~v~eAIdsyIkA------~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~~I--DteLi~ay 126 (624)
T 3lvg_A 55 AVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYV--ETELIFAL 126 (624)
T ss_dssp CCSSSHHHHTTTSSSCTTTTTSSCCC------SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCSTTT--THHHHHHH
T ss_pred cHHHHHHHHHHccCchHHHHHHHHhC------CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccccc--HHHHHHHH
Confidence 56777777777777777777655321 15667778888888888888888877766655334433 34677777
Q ss_pred HhcCcccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 042546 382 VVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAM 434 (671)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 434 (671)
++.++... +.+-=..|+..-...+-+-|...|.++.|.-+|..+
T Consensus 127 Ak~~rL~e---------lEefl~~~N~A~iq~VGDrcf~e~lYeAAKilys~i 170 (624)
T 3lvg_A 127 AKTNRLAE---------LEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV 170 (624)
T ss_dssp HTSCSSST---------TTSTTSCCSSSCTHHHHHHHHHSCCSTTSSTTGGGS
T ss_pred HhhCcHHH---------HHHHHcCCCcccHHHHHHHHHHccCHHHHHHHHHhC
Confidence 77665431 000112234444455566666667666666666543
No 269
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=55.33 E-value=84 Score=25.62 Aligned_cols=68 Identities=13% Similarity=-0.011 Sum_probs=38.9
Q ss_pred CCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 042546 405 VLTDAMLNSVLKALISVGR---MGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEAS 472 (671)
Q Consensus 405 ~~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 472 (671)
.++..+--...-++.+..+ ..++..+++++.+.+-.......--|.-++.+.|++++|.+..+.+.+.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~ 106 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 106 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 4454444444455555554 3456667777666432122233344555677777777777777777765
No 270
>2czy_A Paired amphipathic helix protein SIN3B; SIN3, PAH1, transcriptional repressor, gene regulation; NMR {Mus musculus}
Probab=53.62 E-value=56 Score=23.32 Aligned_cols=70 Identities=9% Similarity=0.139 Sum_probs=52.4
Q ss_pred ChHHHHHHHHHhhhCCCCCHHHHHHHHHHHHH--cCCHHHHHHHHHhchHhhhccHHHHHHHHhhhcCCCCCC
Q 042546 597 TSDDAIAFLKGMTSKRFPSMSVVLCLFAAFFQ--ARRHSEAQDLLSKCPRYVRNHADVLNLLYSKKSGGDSAP 667 (671)
Q Consensus 597 ~~~~A~~~~~~m~~~~~p~~~~~~~l~~~~~~--~g~~~~A~~~~~~m~~~~~~~~~~~~l~~~m~~~g~~p~ 667 (671)
.+++|..+++.+......+...|...++.+.. .++. ....+++++..-..++++.+.=|......|.+-+
T Consensus 3 ~~~dA~~yl~~VK~~F~~~p~~Y~~FL~im~~~k~~~~-~~~~v~~rv~~Lf~~hpdLi~gFn~FLP~~~~i~ 74 (77)
T 2czy_A 3 HVEDALTYLDQVKIRFGSDPATYNGFLEIMKEFKSQSI-DTPGVIRRVSQLFHEHPDLIVGFNAFLPLGYRID 74 (77)
T ss_dssp SHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTCS-CHHHHHHHHHHHTTTCHHHHHHHHTTSCSSSCCC
T ss_pred CHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHcCCHHHHHHHHHHCCCCceec
Confidence 36789999999988655678888888777653 3332 3456777777777889999999998888886544
No 271
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=53.38 E-value=70 Score=28.03 Aligned_cols=14 Identities=7% Similarity=0.083 Sum_probs=9.9
Q ss_pred hHHHHHHHHHHHHc
Q 042546 281 PKKALIFFRWAEES 294 (671)
Q Consensus 281 ~~~A~~~f~~~~~~ 294 (671)
++.|+.+|+.+.+.
T Consensus 88 LESAl~v~~~I~~e 101 (235)
T 3bu8_A 88 LESAINVLEMIKTE 101 (235)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 56777778777754
No 272
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=49.33 E-value=1.4e+02 Score=29.86 Aligned_cols=95 Identities=12% Similarity=0.053 Sum_probs=69.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH---CCCCCCHH----H
Q 042546 410 MLNSVLKALISVGRMGECNKILKAMEEGG--FIASSNMKSKIAFRLSSAGKKDEANEFMDHMEA---SGSDVGDK----M 480 (671)
Q Consensus 410 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~g~~~~~~----~ 480 (671)
+...+...|.+.|++++|.+.|.++...- ...-...+-.+|..+...+++..+...+.+... .+..|+.. .
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 56778899999999999999999998642 233456778889999999999999999988753 33333332 1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 042546 481 WVSLIKGHCVAGDLDKAADCFQKMVE 506 (671)
Q Consensus 481 ~~~li~~~~~~g~~~~a~~~~~~m~~ 506 (671)
|..+ .+...+++..|.+.|-+...
T Consensus 213 ~~gl--~~l~~r~f~~Aa~~f~e~~~ 236 (429)
T 4b4t_R 213 YYGI--HCLAVRNFKEAAKLLVDSLA 236 (429)
T ss_dssp HHHH--GGGGTSCHHHHHHHHHHHHH
T ss_pred HHHH--HHHHhChHHHHHHHHHHHhc
Confidence 2222 23467889999888887766
No 273
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=48.71 E-value=1.3e+02 Score=29.94 Aligned_cols=99 Identities=8% Similarity=0.054 Sum_probs=71.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCCCHH----
Q 042546 444 NMKSKIAFRLSSAGKKDEANEFMDHMEASGSDV--GDKMWVSLIKGHCVAGDLDKAADCFQKMVEK--EGTSHAGY---- 515 (671)
Q Consensus 444 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--~g~~p~~~---- 515 (671)
.++..+..-|.+.|++++|.+.+.++...-..+ -...+-.+|..+...+++..+...+++.... .+-.|+..
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk 211 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK 211 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence 356778899999999999999999998643333 3456778889999999999999999987652 23233322
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 042546 516 AIDLLVNTYCSKNRAIDACKFVHNCVREY 544 (671)
Q Consensus 516 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 544 (671)
.|..++ +...+++.+|.+.|-+....+
T Consensus 212 ~~~gl~--~l~~r~f~~Aa~~f~e~~~t~ 238 (429)
T 4b4t_R 212 TYYGIH--CLAVRNFKEAAKLLVDSLATF 238 (429)
T ss_dssp HHHHHG--GGGTSCHHHHHHHHHHHHHHS
T ss_pred HHHHHH--HHHhChHHHHHHHHHHHhccC
Confidence 122222 345789999999888876543
No 274
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=46.37 E-value=43 Score=30.72 Aligned_cols=17 Identities=6% Similarity=-0.013 Sum_probs=8.4
Q ss_pred HHHHHHHccCChHHHHH
Q 042546 306 AMASVLGREDCIDRFWK 322 (671)
Q Consensus 306 ~li~~~~~~g~~~~A~~ 322 (671)
+.+...++.|+.+.+..
T Consensus 7 ~~L~~A~~~g~~~~v~~ 23 (285)
T 1wdy_A 7 HLLIKAVQNEDVDLVQQ 23 (285)
T ss_dssp HHHHHHHHTTCHHHHHH
T ss_pred hHHHHHHHcCCHHHHHH
Confidence 34444555666554333
No 275
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=43.94 E-value=23 Score=32.61 Aligned_cols=45 Identities=16% Similarity=0.103 Sum_probs=25.7
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCH-----HHHHHHHHhcCChHHHHHHHH
Q 042546 562 VQRGFKDALSLLCLMKDHGFPPFV-----DPFIKYVSKSGTSDDAIAFLK 606 (671)
Q Consensus 562 ~~g~~~~A~~l~~~m~~~~~~p~~-----~t~~~~l~~~g~~~~A~~~~~ 606 (671)
..++.....++.+.+.+.|..++. .|-+..-++.|..+-+..+++
T Consensus 191 ~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 240 (285)
T 1wdy_A 191 LSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLE 240 (285)
T ss_dssp HCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred HccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHh
Confidence 345544455666666777765543 234555566677665555555
No 276
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=41.34 E-value=48 Score=28.45 Aligned_cols=30 Identities=10% Similarity=0.001 Sum_probs=15.5
Q ss_pred HHHHHHhCCChHHHHHHHHHHHhCCCCCCH
Q 042546 342 VLGRFSERNMVKEAVDLYEFAMACKNKPSV 371 (671)
Q Consensus 342 li~~~~~~g~~~~a~~l~~~m~~~g~~p~~ 371 (671)
.+...+..|..+.-.++.+.+.+.|..++.
T Consensus 41 ~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~ 70 (186)
T 3t8k_A 41 ILYDVLRNNNDEARYKISMFLINKGADIKS 70 (186)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHTTCCSSC
T ss_pred HHHHHHHcCCcchHHHHHHHHHHCCCCCCC
Confidence 333344455555445555555566655543
No 277
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=39.38 E-value=1.9e+02 Score=25.14 Aligned_cols=55 Identities=22% Similarity=0.162 Sum_probs=29.1
Q ss_pred CCHHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 042546 528 NRAIDACKFVHNCVREYDLKPW-HTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPP 583 (671)
Q Consensus 528 g~~~~A~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p 583 (671)
+...++..+|..|..+ ++.-. ...|......+...|++.+|.++|+.-.+.+-.|
T Consensus 93 ~~~~~p~~if~~L~~~-~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 93 NNFHESENTFKYMFNK-GIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp TCHHHHHHHHHHHHHH-TSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred cccCCHHHHHHHHHHC-CCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 3355556666665543 44332 2334444455555666666666666666555555
No 278
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=37.93 E-value=1.4e+02 Score=24.60 Aligned_cols=66 Identities=9% Similarity=0.011 Sum_probs=35.3
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCC--ChHHHHHHHHHHHhCCCCCC
Q 042546 304 YNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERN--MVKEAVDLYEFAMACKNKPS 370 (671)
Q Consensus 304 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g--~~~~a~~l~~~m~~~g~~p~ 370 (671)
.+.+|.-|...|+.++|.+.++++..-... ...+...+..++-+.+ ..+.+..++..+...|+-+.
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f~-~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~ 79 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITI 79 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcch-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCH
Confidence 455667777777777777777776421111 2333444444444432 23455566666655554443
No 279
>2cr7_A Paired amphipathic helix protein SIN3B; paired amphipathic helix repeat, transcriptional repressor, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rmr_A 2rms_A
Probab=37.34 E-value=62 Score=23.30 Aligned_cols=67 Identities=9% Similarity=0.188 Sum_probs=48.6
Q ss_pred ChHHHHHHHHHhhhCCCCCHHHHHHHHHHHHH--cCCHHHHHHHHHhchHhhhccHHHHHHHHhhhcCCC
Q 042546 597 TSDDAIAFLKGMTSKRFPSMSVVLCLFAAFFQ--ARRHSEAQDLLSKCPRYVRNHADVLNLLYSKKSGGD 664 (671)
Q Consensus 597 ~~~~A~~~~~~m~~~~~p~~~~~~~l~~~~~~--~g~~~~A~~~~~~m~~~~~~~~~~~~l~~~m~~~g~ 664 (671)
.+++|..+++.+......+...|...++.+.. .++. ....++.++..-...+++.+.=|......|.
T Consensus 9 ~~~dA~~yl~~VK~rF~~~p~~Y~~FL~im~~fk~~~~-~~~~v~~rV~~Lf~~hpdLi~gFn~FLP~~~ 77 (80)
T 2cr7_A 9 HVEDALTYLDQVKIRFGSDPATYNGFLEIMKEFKSQSI-DTPGVIRRVSQLFHEHPDLIVGFNAFLPSGP 77 (80)
T ss_dssp CSCCSHHHHHHHHHHTSSCHHHHHHHHHHHHHHHTTSS-CHHHHHHHHHHHGGGCHHHHHHHHHHSSCSS
T ss_pred CHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHcCCHHHHHHHHHHCcCCC
Confidence 46788899999888655677888888776654 3333 3346777777777888998888887776554
No 280
>1dm5_A Annexin XII E105K mutant homohexamer; novel PH-dependent hexamerization switch E76, low calcium form; 1.93A {Hydra vulgaris} SCOP: a.65.1.1 PDB: 1aei_A
Probab=36.79 E-value=2.8e+02 Score=26.19 Aligned_cols=40 Identities=20% Similarity=0.100 Sum_probs=23.8
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHh-c-CChHHHHHHHHHhh
Q 042546 568 DALSLLCLMKDHGFPPFVDPFIKYVSK-S-GTSDDAIAFLKGMT 609 (671)
Q Consensus 568 ~A~~l~~~m~~~~~~p~~~t~~~~l~~-~-g~~~~A~~~~~~m~ 609 (671)
-|..+.+.|. |...|..+++..+.. + -++......|+++-
T Consensus 248 ~A~~L~~am~--g~Gtd~~~Liriiv~rse~dl~~Ik~~y~~~y 289 (315)
T 1dm5_A 248 FAERLHHAMK--GLGTSDKTLIRILVSRSEIDLANIKETFQAMY 289 (315)
T ss_dssp HHHHHHHHHC--TTCCCHHHHHHHHHHHTTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHhh--cCCCCHHHHhHHHHhcCHHHHHHHHHHHHHHh
Confidence 4666666665 556677777777652 2 34555555555443
No 281
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=36.19 E-value=2.2e+02 Score=26.71 Aligned_cols=189 Identities=11% Similarity=0.077 Sum_probs=0.0
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 042546 305 NAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVS 384 (671)
Q Consensus 305 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~ 384 (671)
..+|.-|...|+.++|...++++......|..+....-...=.+...-+.+-.++..+.. ++-+.......+...+...
T Consensus 7 ~~ii~EYf~~~d~~Ea~~~l~el~~p~~~~~~v~~~i~~aldr~~~erE~~s~LLs~L~~-~~ls~~~i~~gf~~ll~~l 85 (307)
T 2zu6_B 7 TPIIQEYFEHGDTNEVAEMLRDLNLGEMKSGVPVLAVSLALEGKASHREMTSKLLSDLCG-TVMSTTDVEKSFDKLLKDL 85 (307)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTTCCGGGGGGHHHHHHHHHHTSCHHHHHHHHHHHHHHHH-HTBCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhh
Q ss_pred Cccc------HHHHHHHHHHHHHcCCCCCHHH------------------------------------------------
Q 042546 385 KQLD------MRLFSKVVRVFRENGNVLTDAM------------------------------------------------ 410 (671)
Q Consensus 385 ~~~~------~~~~~~~~~~~~~~~~~~~~~~------------------------------------------------ 410 (671)
.+.. .+..-.++......++.|-...
T Consensus 86 dDl~lD~P~a~~~la~flaraV~d~~l~~~~l~~~~~~~~~~~g~~~l~~a~~~l~~~~~~~~~~~~WG~~~~~~~~eel 165 (307)
T 2zu6_B 86 PELALDTPRAPQLVGQFIARAVGDGILCNTYIDSYKGTVDCVQARAALDKATVLLSMSKGGKRKDSVWGSGGGQQSVNHL 165 (307)
T ss_dssp HHHHHHCTTHHHHHHHHHHHHHHTTSSCTTTTGGGTTTCCCHHHHHHHHHHHHHHHTCC----CCCSSCCCSTTSCHHHH
T ss_pred hHhcccccchHHHHHHHHHHHHHhCCCCHHHHHHHHhcccchHHHHHHHHHHHHhcccccHhHHhhhcCCCCCCCCHHHH
Q ss_pred ---HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH--HHHHHHHHHHHHCCCCCCHHHHHHHH
Q 042546 411 ---LNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKK--DEANEFMDHMEASGSDVGDKMWVSLI 485 (671)
Q Consensus 411 ---~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~--~~A~~~~~~m~~~g~~~~~~~~~~li 485 (671)
.+.++.-|...|+.++|.+.++++... .-....+..++..++-+.++. +...+++..+.+.|+-+.......+.
T Consensus 166 kkki~~lL~EY~~~~D~~EA~~ci~EL~~p-~f~~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~~q~~~Gf~ 244 (307)
T 2zu6_B 166 VKEIDMLLKEYLLSGDISEAEHCLKELEVP-HFHHELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVDQMKRGYE 244 (307)
T ss_dssp HHHHHHHHHHHHHHCCHHHHHHHHHHHCCG-GGHHHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHcCCC-cchHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
Q ss_pred HHHHhcCCHH
Q 042546 486 KGHCVAGDLD 495 (671)
Q Consensus 486 ~~~~~~g~~~ 495 (671)
..+....+..
T Consensus 245 ~vl~~l~Dl~ 254 (307)
T 2zu6_B 245 RIYNEIPDIN 254 (307)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHhccHhh
No 282
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=36.19 E-value=56 Score=29.03 Aligned_cols=183 Identities=7% Similarity=-0.008 Sum_probs=0.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH--HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH--HHHHHH
Q 042546 413 SVLKALISVGRMGECNKILKAMEEGGFIASSNMKS--KIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWV--SLIKGH 488 (671)
Q Consensus 413 ~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~--~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~--~li~~~ 488 (671)
+.+...++.|+.+.+..+++.+.+.|..++..... +.+...+..|+.+ +++.+.+.|..++..... +.+...
T Consensus 11 t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~l~~A 86 (241)
T 1k1a_A 11 TPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPS----VVRLLVTAGASPMALDRHGQTAAHLA 86 (241)
T ss_dssp CHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred cHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHH----HHHHHHHcCCCccccCCCCCCHHHHH
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCCHHHHH--HHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 042546 489 CVAGDLDKAADCFQKMVEKEGTSHAGYAID--LLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGF 566 (671)
Q Consensus 489 ~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~--~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~ 566 (671)
+..|+.+-+..+++.... .++.++..... +.+...+..|+.+-...+++.-.. -...+.....+.+...+..|+.
T Consensus 87 ~~~~~~~~~~~Ll~~~~~-~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~--~~~~~~~~g~t~L~~A~~~~~~ 163 (241)
T 1k1a_A 87 CEHRSPTCLRALLDSAAP-GTLDLEARNYDGLTALHVAVNTECQETVQLLLERGAD--IDAVDIKSGRSPLIHAVENNSL 163 (241)
T ss_dssp HHTTCHHHHHHHHHHSCT-TSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC--TTCCCTTTCCCHHHHHHHTTCH
T ss_pred HHcCCHHHHHHHHHcCCC-ccccccccCcCCCcHHHHHHHcCCHHHHHHHHHcCCC--cccccccCCCcHHHHHHHcCCH
Q ss_pred HHHHHHHHHHHhCCCCCCH-----HHHHHHHHhcCChHHHHHHHH
Q 042546 567 KDALSLLCLMKDHGFPPFV-----DPFIKYVSKSGTSDDAIAFLK 606 (671)
Q Consensus 567 ~~A~~l~~~m~~~~~~p~~-----~t~~~~l~~~g~~~~A~~~~~ 606 (671)
+ +++.+.+.|..++. .|-+..-+..|..+-+..+++
T Consensus 164 ~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 204 (241)
T 1k1a_A 164 S----MVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVR 204 (241)
T ss_dssp H----HHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHH
T ss_pred H----HHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHh
No 283
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=36.16 E-value=2.1e+02 Score=24.75 Aligned_cols=36 Identities=8% Similarity=0.009 Sum_probs=16.8
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCc
Q 042546 350 NMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQ 386 (671)
Q Consensus 350 g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~ 386 (671)
.+.+.|+-.+.+|.+.| .|.-..-..++-+.-..|.
T Consensus 28 SDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGl 63 (204)
T 2r9g_A 28 SDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGL 63 (204)
T ss_dssp TCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGG
T ss_pred CCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccC
Confidence 45555555555555555 4444333344444333333
No 284
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=35.55 E-value=3e+02 Score=26.23 Aligned_cols=170 Identities=15% Similarity=0.116 Sum_probs=107.1
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCccc--HHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 042546 338 TCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLD--MRLFSKVVRVFRENGNVLTDAMLNSVL 415 (671)
Q Consensus 338 t~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~li 415 (671)
+|.++..-|.+.+++++|++++..--. .+.+.++.. .+++.-+++.+.+.+.++|......++
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~GA~---------------~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~ 101 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILASVSQ---------------TLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLL 101 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH---------------HHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHH---------------HHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 445566668899999999998765321 122233333 356677778888889999988888888
Q ss_pred HHHHhcCCHH-HHHHHHHHHHH----CC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 042546 416 KALISVGRMG-ECNKILKAMEE----GG--FIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGH 488 (671)
Q Consensus 416 ~~~~~~g~~~-~A~~~~~~m~~----~g--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~ 488 (671)
..+.....-+ .=.++.+++.+ .| -.-|......+...|.+.+++.+|...|- .|-.+....|..++.-+
T Consensus 102 ~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i----lg~~~s~~~~a~mL~ew 177 (336)
T 3lpz_A 102 GCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV----LGTKESPEVLARMEYEW 177 (336)
T ss_dssp HHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT----TSCTTHHHHHHHHHHHH
T ss_pred HHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH----hcCCchHHHHHHHHHHH
Confidence 8887766422 22334444432 22 23456677788889999999999988873 23334446676666555
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 042546 489 CVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVR 542 (671)
Q Consensus 489 ~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 542 (671)
...+... ++|...-.+++. |.-.+++..|..+|+...+
T Consensus 178 ~~~~~~~---------------e~dlfiaRaVL~-yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 178 YKQDESH---------------TAPLYCARAVLP-YLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp HHTSCGG---------------GHHHHHHHHHHH-HHHTTCHHHHHHHHHHHHH
T ss_pred HHhcCCc---------------cHHHHHHHHHHH-HHHhCCHHHHHHHHHHHHH
Confidence 4443311 223444444554 4456888888887776654
No 285
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=35.53 E-value=1.7e+02 Score=23.30 Aligned_cols=66 Identities=9% Similarity=0.011 Sum_probs=36.5
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCC--ChHHHHHHHHHHHhCCCCCC
Q 042546 304 YNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERN--MVKEAVDLYEFAMACKNKPS 370 (671)
Q Consensus 304 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g--~~~~a~~l~~~m~~~g~~p~ 370 (671)
.+.+|.-|...|+.++|.+.++++..-... ...+...+..++-+.+ ..+.+..++..+.+.|+-+.
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~-~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~ 77 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITI 77 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCccH-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCH
Confidence 455677777777788887777777522111 2334444444454443 23556666666665554443
No 286
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=33.30 E-value=2.3e+02 Score=24.48 Aligned_cols=38 Identities=11% Similarity=0.006 Sum_probs=22.5
Q ss_pred CCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCc
Q 042546 349 RNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQ 386 (671)
Q Consensus 349 ~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~ 386 (671)
-.+.+.|+-.+.+|++.|-.|.-..-..++-+.-..|.
T Consensus 20 GSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIGl 57 (201)
T 3bge_A 20 GSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVGN 57 (201)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGG
T ss_pred CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccC
Confidence 35666777777777766666655555555555444443
No 287
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=32.51 E-value=2.5e+02 Score=24.42 Aligned_cols=56 Identities=16% Similarity=0.052 Sum_probs=37.4
Q ss_pred cCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 042546 421 VGRMGECNKILKAMEEGGFIA-SSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDV 476 (671)
Q Consensus 421 ~g~~~~A~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~ 476 (671)
++...++.++|..|...|+-. -..-|-.....+...|++.+|.++|+.-.+.+-+|
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 344667777777777766533 34456666666777777777777777777766666
No 288
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=32.24 E-value=2.3e+02 Score=30.06 Aligned_cols=304 Identities=13% Similarity=0.027 Sum_probs=0.0
Q ss_pred HHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-------hCCChHHHHHHHHHHHhCC--CCCCHHHHHH
Q 042546 306 AMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFS-------ERNMVKEAVDLYEFAMACK--NKPSVNCCTF 376 (671)
Q Consensus 306 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~-------~~g~~~~a~~l~~~m~~~g--~~p~~~~~~~ 376 (671)
++|--|.|+|++++|.++.++.... ++--...|...+..|+ ....-++...-|++..+.. ..|=....=.
T Consensus 157 a~IyY~LR~G~~~~A~e~~~~~~~~-~~~~d~~F~~~l~~~~~s~~~~L~~~~~~~l~~ey~~~~r~~~~~DpyK~AvY~ 235 (661)
T 2qx5_A 157 ALIFYLLRAGLIKEALQVLVENKAN-IKKVEQSFLTYFKAYASSKDHGLPVEYSTKLHTEYNQHIKSSLDGDPYRLAVYK 235 (661)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHTGGG-C-----CHHHHHHHC------------------------------CHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHhhhh-HhhhhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q ss_pred HHHHHHhcCcccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-----------CHHHHHHHHHHHHHCCCCCCHHH
Q 042546 377 LLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVG-----------RMGECNKILKAMEEGGFIASSNM 445 (671)
Q Consensus 377 ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-----------~~~~A~~~~~~m~~~g~~~~~~~ 445 (671)
+|..|--..... ..+..+..-|--+=-.+.+.+ -+++-.+.+.+.-+.-+.+
T Consensus 236 Iig~cD~~~~~~-------------~~v~~siED~LWl~L~lvre~~~~~~~~~e~ytL~~LQ~~I~~yGe~~F~~---- 298 (661)
T 2qx5_A 236 LIGRCDLSRKNI-------------PAVTLSIEDWLWMHLMLIKEKDAENDPVYERYSLEDFQNIIISYGPSRFSN---- 298 (661)
T ss_dssp HHHTCCGGGCCC-------------GGGCCSHHHHHHHHHHTCCC----------CCCHHHHHHHHHHHCGGGGTT----
T ss_pred HHhcccccccch-------------HHHhccHHHHHHHHHHhccCCCcccccccccccHHHHHHHHHHhhhhhhhh----
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHH
Q 042546 446 KSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYC 525 (671)
Q Consensus 446 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~ 525 (671)
.....+.-.|++|.|.+.+-.. ...|.+.+.+.+..|.-.+- -+.+.. ....-...-+..||..|.
T Consensus 299 --lYf~vLlLtgqFE~AI~~L~~~----~~vdAVH~AIaL~~~gLL~~-------~~~lls-~~~~~~~lN~arLI~~Yt 364 (661)
T 2qx5_A 299 --YYLQTLLLSGLYGLAIDYTYTF----SEMDAVHLAIGLASLKLFKI-------DSSTRL-TKKPKRDIRFANILANYT 364 (661)
T ss_dssp --CHHHHHHHTTCHHHHHHHHHTT----CHHHHHHHHHHHHHTTC-------------------------CHHHHHHHHH
T ss_pred --HHHHHHHHHhhHHHHHHHHHhc----CchhHHHHHHHHHHcCCccC-------CCcccc-cCCCcccccHHHHHHHHH
Q ss_pred h---cCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHhcCChHHHH
Q 042546 526 S---KNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPFIKYVSKSGTSDDAI 602 (671)
Q Consensus 526 ~---~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~t~~~~l~~~g~~~~A~ 602 (671)
+ ..+..+|.+.|--+....|-.-....+.++-+.....+.++ .++-.+...|..- .-++.-+..-=++++-.
T Consensus 365 ~~F~~td~~~Al~Y~~li~l~~g~~~~~~~~~~l~eLvletr~f~---~LLG~i~~dG~r~--~G~i~~~~~li~l~d~~ 439 (661)
T 2qx5_A 365 KSFRYSDPRVAVEYLVLITLNEGPTDVELCHEALRELVLETKEFT---VLLGKIGRDGARI--PGVIEERQPLLHVRDEK 439 (661)
T ss_dssp TTTTTTCHHHHHHHHHGGGGSCCHHHHHHHHHHHHHHHHHHCCHH---HHHCEECTTSCEE--CCHHHHTCGGGTCSCHH
T ss_pred HHhhcCCHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHhcccHH---HHcCCcCCCCCcC--cchHHHhhcccccccHH
Q ss_pred HHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhchHhhhccHHHHHHHHhhh
Q 042546 603 AFLKGMTSKRFPSMSVVLCLFAAFFQARRHSEAQDLLSKCPRYVRNHADVLNLLYSKK 660 (671)
Q Consensus 603 ~~~~~m~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~l~~~m~ 660 (671)
++.+.+.. ....-+...|++++|..+|+-.. .++.++++++...
T Consensus 440 ~~~~~i~~----------~aA~~ae~~G~~~dAi~LY~La~----~~d~vl~lln~~L 483 (661)
T 2qx5_A 440 EFLHTITE----------QAARRADEDGRIYDSILLYQLAE----EYDIVITLVNSLL 483 (661)
T ss_dssp HHHHHHHH----------HHHHHHHHTTCHHHHHHHHHHTT----CHHHHHHHHHHHH
T ss_pred HHHHHHHH----------HHHHHHHHCCCHHHHHHHHHHhc----CHHHHHHHHHHHH
No 289
>1e91_A Paired amphipathic helix protein SIN3B; eukaryotic transcriptional regulation, SIN3, PAH domains, protein-protein interactions; NMR {Mus musculus} SCOP: a.59.1.1 PDB: 1pd7_A
Probab=30.89 E-value=93 Score=22.69 Aligned_cols=66 Identities=8% Similarity=0.215 Sum_probs=45.9
Q ss_pred hHHHHHHHHHhhhCCCCCHHHHHHHHHHHHH--cCCHH---------HHHHHHHhchHhhhccHHHHHHHHhhhcCC
Q 042546 598 SDDAIAFLKGMTSKRFPSMSVVLCLFAAFFQ--ARRHS---------EAQDLLSKCPRYVRNHADVLNLLYSKKSGG 663 (671)
Q Consensus 598 ~~~A~~~~~~m~~~~~p~~~~~~~l~~~~~~--~g~~~---------~A~~~~~~m~~~~~~~~~~~~l~~~m~~~g 663 (671)
+++|..+++.+......+...|...++.+.. .++.+ ...+++.++..-..++++.+.=|....-.+
T Consensus 7 ~~~A~~yv~kVK~rF~~~p~~Y~~FL~il~~yk~~~~d~~~~~~~~~s~~eV~~~V~~Lf~~hpDLl~~F~~FLP~~ 83 (85)
T 1e91_A 7 FNNAISYVNKIKTRFLDHPEIYRSFLEILHTYQKEQLHTKGRPFRGMSEEEVFTEVANLFRGQEDLLSEFGQFLPEA 83 (85)
T ss_dssp HHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTCSSSCCCSSCCCHHHHHHHHHHHTSSCHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHccccccccccccCcHHHHHHHHHHHHccCHHHHHHHHHHCcCc
Confidence 5789999999988765678888887776642 23211 235677777777778888888777665444
No 290
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=30.36 E-value=3.2e+02 Score=25.04 Aligned_cols=115 Identities=11% Similarity=0.048 Sum_probs=72.2
Q ss_pred HHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHhcCChHHHH
Q 042546 523 TYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPFIKYVSKSGTSDDAI 602 (671)
Q Consensus 523 ~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~t~~~~l~~~g~~~~A~ 602 (671)
...+.|++++|......-.+. -+-|...-..++..+|-.|++++|.+-++...+ +.|+...-...|.. .=.|+
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~--~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~--l~p~~~~~a~~yr~---lI~aE 78 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKA--SPKDASLRSSFIELLCIDGDFERADEQLMQSIK--LFPEYLPGASQLRH---LVKAA 78 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHT--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCGGGHHHHHHHHH---HHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--hCchhhHHHHHHHH---HHHHH
Confidence 455778888888888777653 345667777888888889999998887777765 35665544444422 12233
Q ss_pred HHHHHhhhCC-----C-CCHHHHHHHHHHHH--HcCCHHHHHHHHHhchH
Q 042546 603 AFLKGMTSKR-----F-PSMSVVLCLFAAFF--QARRHSEAQDLLSKCPR 644 (671)
Q Consensus 603 ~~~~~m~~~~-----~-p~~~~~~~l~~~~~--~~g~~~~A~~~~~~m~~ 644 (671)
..-.+...+. . ....-...++.++. ..|+.++|.++..+.-+
T Consensus 79 ~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e 128 (273)
T 1zbp_A 79 QARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEE 128 (273)
T ss_dssp HHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHh
Confidence 3333333321 1 12333445566554 46999999988887643
No 291
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=27.74 E-value=3.3e+02 Score=24.33 Aligned_cols=91 Identities=10% Similarity=-0.007 Sum_probs=52.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC--CCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 042546 413 SVLKALISVGRMGECNKILKAMEEG--GFIA----SSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIK 486 (671)
Q Consensus 413 ~li~~~~~~g~~~~A~~~~~~m~~~--g~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~ 486 (671)
--++.+....++++|..++++..+. +.++ +...-...+..-.....-.-+..+.+++.. .++...-...+.
T Consensus 23 deLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~---~~~~~~~r~~v~ 99 (235)
T 2d2s_A 23 EEIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILS---SNEIVHLKSGTE 99 (235)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHT---CSSHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCHHHHHHHHH
Confidence 3466778889999999998877641 2221 111112223332333333344444555532 445666666777
Q ss_pred HHHhcCCHHHHHHHHHHHHH
Q 042546 487 GHCVAGDLDKAADCFQKMVE 506 (671)
Q Consensus 487 ~~~~~g~~~~a~~~~~~m~~ 506 (671)
.+.+.|+.++|.++|=+...
T Consensus 100 ~L~rLg~~~~A~~lfL~~rs 119 (235)
T 2d2s_A 100 NMIKLGLPEQALDLFLQNRS 119 (235)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHCCChhHHHHHHHHHHH
Confidence 77888888888887765543
No 292
>2hyv_A Annexin A2; calcium-binding protein, membrane-binding protein, helix BUN heparin, hexasaccharide, metal binding protein; HET: UAP SGN IDS; 1.42A {Homo sapiens} PDB: 2hyu_A* 2hyw_A 1w7b_A 1xjl_A
Probab=25.96 E-value=4.1e+02 Score=24.86 Aligned_cols=39 Identities=15% Similarity=-0.123 Sum_probs=22.0
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHh--cCChHHHHHHHHHh
Q 042546 568 DALSLLCLMKDHGFPPFVDPFIKYVSK--SGTSDDAIAFLKGM 608 (671)
Q Consensus 568 ~A~~l~~~m~~~~~~p~~~t~~~~l~~--~g~~~~A~~~~~~m 608 (671)
.|..+++.|.. ...|..+++..++. .-++......|+++
T Consensus 239 ~A~~L~~A~~g--~GTde~~lirilv~Rs~~~l~~I~~~Y~~~ 279 (308)
T 2hyv_A 239 FADRLYDSMKG--KGTRDKVLIRIMVSRSEVDMLKIRSEFKRK 279 (308)
T ss_dssp HHHHHHHHHSS--SSCCHHHHHHHHHHHTTTTHHHHHHHHHHH
T ss_pred HHHHHHHHhcc--CCCCHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 46677777763 45677777777653 23344444444443
No 293
>3cl3_A ORF K13, KS-vflip; death effector domain, coiled-coil, coiled coil, cytoplasm, disease mutation, ectodermal dysplasia; 3.20A {Human herpesvirus 8}
Probab=25.95 E-value=1.5e+02 Score=25.45 Aligned_cols=105 Identities=12% Similarity=0.059 Sum_probs=62.3
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHhcCChHHHHHHHH----Hhhh---CCCCCHHHHHHHHHHHHHcCCHHH-
Q 042546 563 QRGFKDALSLLCLMKDHGFPPFVDPFIKYVSKSGTSDDAIAFLK----GMTS---KRFPSMSVVLCLFAAFFQARRHSE- 634 (671)
Q Consensus 563 ~g~~~~A~~l~~~m~~~~~~p~~~t~~~~l~~~g~~~~A~~~~~----~m~~---~~~p~~~~~~~l~~~~~~~g~~~~- 634 (671)
.+..+.+.++|..+.+.+.-. ..-+...+...|+.+-..+++. .+.+ ...+....|..++.-....=.-++
T Consensus 37 ~~~le~i~dlf~~L~~~~~l~-~~fL~ElL~~I~R~DLl~~~l~~~~~~ve~~l~~~~~~~s~yr~lL~~Ise~Lt~edl 115 (183)
T 3cl3_A 37 QPTLAQLIGALRALKEEGRLT-FPLLAECLFRAGRRDLLRDLLHLDPRFLERHLAGTMSYFSPYQLTVLHVDGELCARDI 115 (183)
T ss_dssp SCCHHHHHHHHHHHHTTTCSC-HHHHHHHHHHTTCHHHHTTTTCCCHHHHHHHHTSSCCSSCHHHHHHHHHHHHCCHHHH
T ss_pred ccchHhHHHHHHHHHHcCCCC-HHHHHHHHHHcChHHHHHHHHccCHHHHHHhhcccccchhHHHHHHHHHHHhcCHHHH
Confidence 455666667788777766433 2444566677777766544432 1222 333556677777665555433222
Q ss_pred -HHHHHH--hchHhhhccHHHHHHHHhhhcCC-CCCCCc
Q 042546 635 -AQDLLS--KCPRYVRNHADVLNLLYSKKSGG-DSAPAV 669 (671)
Q Consensus 635 -A~~~~~--~m~~~~~~~~~~~~l~~~m~~~g-~~p~~~ 669 (671)
..+++- .+|.. .....++++|..|.+.| +.||-+
T Consensus 116 ~~lKFl~~~~ipk~-e~~~s~ldlf~~LEk~~~l~~~nl 153 (183)
T 3cl3_A 116 RSLIFLSKDTIGSR-STPQTFLHWVYCMENLDLLGPTDV 153 (183)
T ss_dssp HHHHHHHSSCTTCS-SCCSSHHHHHHHHHTTTSCSTTCC
T ss_pred HHHHHHCccccCcc-cccCCHHHHHHHHHHhCCCCCchH
Confidence 222332 46655 66677899999999988 777654
No 294
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=25.64 E-value=68 Score=27.44 Aligned_cols=15 Identities=13% Similarity=0.237 Sum_probs=8.0
Q ss_pred HHHHHHHHhCCCCCC
Q 042546 570 LSLLCLMKDHGFPPF 584 (671)
Q Consensus 570 ~~l~~~m~~~~~~p~ 584 (671)
.++.+.+.+.|..|+
T Consensus 158 ~~~v~~Ll~~ga~~~ 172 (201)
T 3hra_A 158 QDIVKLLMENGADQS 172 (201)
T ss_dssp HHHHHHHHHTTCCTT
T ss_pred HHHHHHHHHCCCCCC
Confidence 445555555555544
No 295
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=25.32 E-value=1.6e+02 Score=24.59 Aligned_cols=52 Identities=10% Similarity=0.243 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCC
Q 042546 318 DRFWKVLDEMRSKGYEME-METCVKVLGRFSERNMVKEAVDLYEFAMACKNKP 369 (671)
Q Consensus 318 ~~A~~~~~~m~~~g~~p~-~~t~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p 369 (671)
+++.++|..|...||--. ..-|..-...+-..|++.+|.++|..-.+.+-.|
T Consensus 77 ~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P 129 (164)
T 2wvi_A 77 NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEP 129 (164)
T ss_dssp SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
No 296
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=24.44 E-value=3.6e+02 Score=23.59 Aligned_cols=32 Identities=13% Similarity=-0.029 Sum_probs=15.7
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 042546 315 DCIDRFWKVLDEMRSKGYEMEMETCVKVLGRF 346 (671)
Q Consensus 315 g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~ 346 (671)
.+.+.|+-.+-+|.+.|-.|.-..-..++-+.
T Consensus 49 SDpDAALywLaRMl~~GEDp~~IaRRLvi~As 80 (213)
T 3ctd_A 49 SDPDATLYWLANMVEAGEDPNFIFRRLLISAC 80 (213)
T ss_dssp TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 45555555555555555444444434444333
No 297
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=24.23 E-value=2.2e+02 Score=21.06 Aligned_cols=61 Identities=15% Similarity=0.197 Sum_probs=31.9
Q ss_pred HhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhchHhhhccHHHHHHHHhhhcCC
Q 042546 593 SKSGTSDDAIAFLKGMTSKRFPSMSVVLCLFAAFFQARRHSEAQDLLSKCPRYVRNHADVLNLLYSKKSGG 663 (671)
Q Consensus 593 ~~~g~~~~A~~~~~~m~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~l~~~m~~~g 663 (671)
-..|++++|..++..... .++.++....+...-..+-.++.++....+.+...+..-.+.|
T Consensus 26 D~~g~y~eAl~~Y~~Aie----------~l~~alk~e~~~~~k~~l~~K~~eYl~RAE~LK~~l~~~~~~g 86 (93)
T 1wfd_A 26 DAESRYQQALVCYQEGID----------MLLQVLKGTKESSKRCVLRTKISGYMDRAENIKKYLDQEKEDG 86 (93)
T ss_dssp HHTTCHHHHHHHHHHHHH----------HHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHhCCHHHHHHHHHHHHH----------HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccccCC
Confidence 356777777777765543 2333333333344333344445555555555555565555555
No 298
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=24.06 E-value=2.7e+02 Score=22.05 Aligned_cols=68 Identities=4% Similarity=0.005 Sum_probs=39.7
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCCC
Q 042546 338 TCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVL 406 (671)
Q Consensus 338 t~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (671)
....++.-|...|+.++|.+.++++..... -...+...+..++-+.+..+.+.+..++..+...|+.+
T Consensus 9 ki~~ll~EY~~~~D~~Ea~~cl~eL~~p~f-~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is 76 (129)
T 2nsz_A 9 EIDMLLKEYLLSGDISEAEHCLKELEVPHF-HHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTIT 76 (129)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGGG-HHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhCCCcc-HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcC
Confidence 356788889999999999999999852111 11223334444444433334455555555555555433
No 299
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=24.05 E-value=7.7e+02 Score=27.33 Aligned_cols=158 Identities=11% Similarity=0.027 Sum_probs=88.7
Q ss_pred HHHHHHHHhcCC---HHHHHHHHHHHHHCC----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 042546 412 NSVLKALISVGR---MGECNKILKAMEEGG----FIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSL 484 (671)
Q Consensus 412 ~~li~~~~~~g~---~~~A~~~~~~m~~~g----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l 484 (671)
..++...|+.|. .++|.+.|+.....+ ++||... .+...-.+.|..++-..+++..... .+..--..+
T Consensus 690 ~~~l~~ac~~g~~~c~~~a~~~f~~~~~~~~~~~i~~dlr~--~vy~~~~~~g~~~~~~~l~~~~~~~---~~~~ek~~l 764 (909)
T 4fke_A 690 INAISTACSNGLPQCENLAKTLFDQWMSDPENNPIHPNLRS--TIYCNAIAQGGQDQWDFAWGQLQQA---QLVNEADKL 764 (909)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHTCTTSCCSCTTTHH--HHHHHHHHHSCHHHHHHHHHHHHHC---CSHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHhhCCCCCcCCHHHHH--HHHHHHHHhCCHHHHHHHHHHHHcc---CCHHHHHHH
Confidence 345555566665 457778888766532 4566432 2223334567777666777777653 345556778
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHH----HHHhCCCCCCHHHHHHHHHH
Q 042546 485 IKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCS-KNRAIDACKFVHN----CVREYDLKPWHTTYEELIKN 559 (671)
Q Consensus 485 i~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~-~g~~~~A~~~~~~----m~~~~~~~p~~~~~~~li~~ 559 (671)
+.+++...+.+...++++.......+++.. ... ++.+... .-..+.|++.+.+ +.++ .......+..+|.+
T Consensus 765 l~aL~~~~d~~~l~~~L~~~l~~~~ir~qd-~~~-~~~~v~~n~~g~~~~~~f~~~n~~~l~~~--~~~~~~~~~~~i~~ 840 (909)
T 4fke_A 765 RSALACSNEVWLLNRYLGYTLNPDLIRKQD-ATS-TINSIASNVIGQPLAWDFVQSNWKKLFQD--YGGGSFSFSNLIQG 840 (909)
T ss_dssp HHHHTTCCCHHHHHHHHHHTTCTTTSCGGG-HHH-HHHHHHHSTTHHHHHHHHHHHHCTTTTTS--SSSCCCCHHHHHHH
T ss_pred HHHhCCCCCHHHHHHHHHHHhCCCCCchhh-HHH-HHHHHhcChHHHHHHHHHHHHHHHHHHHH--hCCCchHHHHHHHH
Confidence 888888888888888888776522344432 222 3333333 2234556666654 2222 22333456677777
Q ss_pred HHhcCCHHHHHHHHHHHHh
Q 042546 560 LLVQRGFKDALSLLCLMKD 578 (671)
Q Consensus 560 ~~~~g~~~~A~~l~~~m~~ 578 (671)
.+..-..++-++-++...+
T Consensus 841 ~~~~~~t~~~~~~~~~f~~ 859 (909)
T 4fke_A 841 VTRRFSSEFELQQLEQFKK 859 (909)
T ss_dssp HHTTCCSHHHHHHHHHHHT
T ss_pred HHHhcCCHHHHHHHHHHHh
Confidence 7665544555555555543
No 300
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=23.45 E-value=2.4e+02 Score=26.93 Aligned_cols=222 Identities=10% Similarity=-0.047 Sum_probs=0.0
Q ss_pred CCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 042546 368 KPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDA--MLNSVLKALISVGRMGECNKILKAMEEGGFIASSNM 445 (671)
Q Consensus 368 ~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~ 445 (671)
..|..-++.|..+..... .++++.+.+.|..++.. .-.+.+...+..|+. ++.+.+.+.|..++...
T Consensus 15 ~~d~~g~t~L~~Aa~~g~-------~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~----~~v~~Ll~~g~~~~~~~ 83 (364)
T 3ljn_A 15 KSDDENMEKIHVAARKGQ-------TDEVRRLIETGVSPTIQNRFGCTALHLACKFGCV----DTAKYLASVGEVHSLWH 83 (364)
T ss_dssp -CCHHHHHHHHHHHHHTC-------HHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHCCH----HHHHHHHHHCCCCCCBT
T ss_pred ccCCCCCCHHHHHHHcCC-------HHHHHHHHHcCCCccccCCCCCcHHHHHHHcCCH----HHHHHHHHCCCCccccC
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH-------------------HHHHHHHHhcC--CHHHHHHHHHHH
Q 042546 446 KSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMW-------------------VSLIKGHCVAG--DLDKAADCFQKM 504 (671)
Q Consensus 446 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~-------------------~~li~~~~~~g--~~~~a~~~~~~m 504 (671)
-.+.+...+..|+.+-+..+++.-...|..++.... .+.+...+..| +.+-+..+++.
T Consensus 84 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~- 162 (364)
T 3ljn_A 84 GQKPIHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQL- 162 (364)
T ss_dssp TBCHHHHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHH-
T ss_pred CCCHHHHHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHc-
Q ss_pred HHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 042546 505 VEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWH--TTYEELIKNLLVQRGFKDALSLLCLMKDHGFP 582 (671)
Q Consensus 505 ~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~--~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~ 582 (671)
. ..+......-.+.+...+..|+.+-+..+++.-....+..++. ..-.+-+...+..|+.+ +.+.+.+.|..
T Consensus 163 -g-a~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~g~~~----~v~~Ll~~gad 236 (364)
T 3ljn_A 163 -G-ASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWED----VAMRFVEMGID 236 (364)
T ss_dssp -T-CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHHTTTCHH----HHHHHHTTTCC
T ss_pred -C-CCCcccCCCCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHHHHHHHcCCHH----HHHHHHHcCCC
Q ss_pred CCH-----HHHHHHHHhcCChHHHHHHHHH
Q 042546 583 PFV-----DPFIKYVSKSGTSDDAIAFLKG 607 (671)
Q Consensus 583 p~~-----~t~~~~l~~~g~~~~A~~~~~~ 607 (671)
++. .|-+..-+..|..+-+..+++.
T Consensus 237 ~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ 266 (364)
T 3ljn_A 237 VNMEDNEHTVPLYLSVRAAMVLLTKELLQK 266 (364)
T ss_dssp TTCCCTTSCCHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHhChHHHHHHHHHc
No 301
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=23.30 E-value=82 Score=27.75 Aligned_cols=11 Identities=18% Similarity=0.084 Sum_probs=4.9
Q ss_pred HHHHHhcCCHH
Q 042546 415 LKALISVGRMG 425 (671)
Q Consensus 415 i~~~~~~g~~~ 425 (671)
+...++.|+.+
T Consensus 46 L~~A~~~~~~~ 56 (240)
T 3eu9_A 46 LHWAAINNRID 56 (240)
T ss_dssp HHHHHHTTCHH
T ss_pred HHHHHHhCCHH
Confidence 33344455544
No 302
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=23.03 E-value=1.8e+02 Score=24.29 Aligned_cols=70 Identities=17% Similarity=0.140 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHhCCCh
Q 042546 282 KKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSK--GYEMEMETCVKVLGRFSERNMV 352 (671)
Q Consensus 282 ~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~t~~~li~~~~~~g~~ 352 (671)
+.+++-+....++.|++.+. -=..++..+.+.+..-.|.++++.+.+. +...+..|..--+..+...|-+
T Consensus 14 ~~~~~~~~~~L~~~g~r~T~-qR~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv 85 (162)
T 4ets_A 14 DVLLERFKKILRQGGLKYTK-QREVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMV 85 (162)
T ss_dssp HHHHHHHHHHHHHHTCCCCH-HHHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCE
Confidence 34444444444445555543 2344555566666666677777777665 5455555555555666655543
No 303
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=22.67 E-value=5.8e+02 Score=25.39 Aligned_cols=110 Identities=9% Similarity=0.132 Sum_probs=59.9
Q ss_pred ccccChHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC---CCHHHHHHHHHHHHccCChHHHHHHHHHHHHcC---CCCC
Q 042546 262 NVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVK---HDESSYNAMASVLGREDCIDRFWKVLDEMRSKG---YEME 335 (671)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g---~~p~ 335 (671)
++.+++..+..+.....|+...++.+++.+....... ...++-.. +.+..... ...+
T Consensus 189 ~~~i~~~al~~L~~~~~Gd~R~lln~Le~a~~~a~~~~~~~~~It~e~-----------------v~~~l~~~~~~~dk~ 251 (447)
T 3pvs_A 189 DIVLPDETRRAIAELVNGDARRALNTLEMMADMAEVDDSGKRVLKPEL-----------------LTEIAGERSARFDNK 251 (447)
T ss_dssp SEECCHHHHHHHHHHHCSCHHHHHHHHHHHHHHSCBCTTSCEECCHHH-----------------HHHHHTCCCCC---C
T ss_pred cCcCCHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccccCCCCccCHHH-----------------HHHHHhhhhhccCCc
Confidence 3446677777666666677777777777664321100 00111111 11111111 0111
Q ss_pred HHHHHHHHHHHH---hCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCccc
Q 042546 336 METCVKVLGRFS---ERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLD 388 (671)
Q Consensus 336 ~~t~~~li~~~~---~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~ 388 (671)
...+..+|+++. +.++.+.|+..+.+|.+.|..|....-..++.+.-..|..|
T Consensus 252 gd~~yd~isal~ksirgsd~daAl~~la~ml~~Gedp~~i~rrl~~~a~edig~a~ 307 (447)
T 3pvs_A 252 GDRFYDLISALHKSVRGSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVGNAD 307 (447)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGC
T ss_pred cchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccCCC
Confidence 222333444443 45799999999999999988887766666666655555444
No 304
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=22.60 E-value=57 Score=28.86 Aligned_cols=14 Identities=7% Similarity=-0.235 Sum_probs=5.8
Q ss_pred HhcCCHHHHHHHHH
Q 042546 561 LVQRGFKDALSLLC 574 (671)
Q Consensus 561 ~~~g~~~~A~~l~~ 574 (671)
.+.|+.+-+..+++
T Consensus 218 ~~~~~~~~v~~L~~ 231 (240)
T 3eu9_A 218 KQRKNVWMINHLQE 231 (240)
T ss_dssp HHTTCHHHHHHHHH
T ss_pred HHcCcHHHHHHHHH
Confidence 33444444433333
No 305
>1yii_A Annexin A5, annexin V, lipocortin V, endonexin II; membrane binding, matrix vessicle, protein and metal binding protein; 1.42A {Gallus gallus} PDB: 1yj0_A 1ala_A 1hvd_A 1anx_A 1anw_A 1avh_A 1avr_A 1hak_B* 1hvf_A 1hve_A 1hvg_A 1a8a_A* 1a8b_A* 2ie7_A 1g5n_A 2ie6_A 1bcz_A 1n41_A 1bcw_A 2ran_A ...
Probab=22.45 E-value=4.9e+02 Score=24.48 Aligned_cols=40 Identities=20% Similarity=-0.000 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHh--cCChHHHHHHHHHh
Q 042546 567 KDALSLLCLMKDHGFPPFVDPFIKYVSK--SGTSDDAIAFLKGM 608 (671)
Q Consensus 567 ~~A~~l~~~m~~~~~~p~~~t~~~~l~~--~g~~~~A~~~~~~m 608 (671)
-.|..+++.|. |...|..+++..+.. .-++......|+++
T Consensus 249 ~~A~~L~~a~~--g~Gtd~~~Lirilv~Rse~dl~~Ik~~y~~~ 290 (320)
T 1yii_A 249 YFAETLYYSMK--GAGTDDDTLIRVMVSRSEIDLLDIRHEFRKN 290 (320)
T ss_dssp HHHHHHHHHHS--SSSCCHHHHHHHHHHHTTTTHHHHHHHHHHH
T ss_pred HHHHHHHHhhc--cCCCcHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 35666666665 345666777666642 23444455555543
No 306
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=22.18 E-value=3.3e+02 Score=22.35 Aligned_cols=68 Identities=4% Similarity=0.005 Sum_probs=40.3
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCCC
Q 042546 338 TCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVL 406 (671)
Q Consensus 338 t~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (671)
....+|.-|...|+.++|.+.++++..-.. -...+..++..++-+.+..+.+.+..++..+...++.+
T Consensus 11 ki~~lL~EY~~~~D~~EA~~cl~EL~~p~f-~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is 78 (152)
T 2ion_A 11 EIDMLLKEYLLSGDISEAEHCLKELEVPHF-HHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTIT 78 (152)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGGG-HHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCCCcc-hHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcC
Confidence 456788889999999999999999852111 11233334444444433444455555555555555433
No 307
>3f3f_C Nucleoporin NUP85; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_C 3f3p_C 3ewe_B
Probab=22.03 E-value=2.8e+02 Score=28.64 Aligned_cols=86 Identities=7% Similarity=-0.024 Sum_probs=39.9
Q ss_pred HHHHHHHHHhc--CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 042546 411 LNSVLKALISV--GRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGH 488 (671)
Q Consensus 411 ~~~li~~~~~~--g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~ 488 (671)
|..-|..+..+ .+.+.......++..+=---+..-..-++..|++.|-.+.|.++++.+-.+-. -+...| ..+..|
T Consensus 482 W~vgI~yL~~~~~~~~~~gr~~IselLpr~Pl~Tndd~e~vL~iCa~l~L~~~ar~I~k~~g~k~l-~~g~~g-eAL~~f 559 (570)
T 3f3f_C 482 WPVAIGLIALSATGTRSAKKMVIAELLPHYPFVTNDDIEWMLSICVEWRLPEIAKEIYTTLGNQML-SAHNII-ESIANF 559 (570)
T ss_dssp HHHHHHHHHHCSSSCHHHHHHHHHHHGGGCCCCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHC-----------------
T ss_pred hhHHHHHHhcCCccchhHHHHHHHHHhccCCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHH-HCccHH-HHHHHH
Confidence 44445444443 44556666676666443223455667788888888888888888888765432 233445 556678
Q ss_pred HhcCCHHHHH
Q 042546 489 CVAGDLDKAA 498 (671)
Q Consensus 489 ~~~g~~~~a~ 498 (671)
+++|+++.+.
T Consensus 560 ~rA~~~~~Vk 569 (570)
T 3f3f_C 560 SRAGKYELVK 569 (570)
T ss_dssp ----------
T ss_pred HHcCChhhcc
Confidence 8888877653
No 308
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=21.11 E-value=2.2e+02 Score=26.15 Aligned_cols=223 Identities=8% Similarity=-0.041 Sum_probs=0.0
Q ss_pred hHHHHHHhhcccc----cChHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHH
Q 042546 252 DDVERQLRDLNVT----FSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEM 327 (671)
Q Consensus 252 ~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 327 (671)
.++...+.+.++. .....+...+.. |+.+-+..+++ .|..++...-.+.+...+..|+.+-+..+++.
T Consensus 13 ~~v~~lL~~~~~~~~d~~g~t~L~~A~~~--g~~~~v~~Ll~-----~g~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~- 84 (285)
T 3kea_A 13 KQLKSFLSSKDTFKADVHGHSASYYAIAD--NNVRLVCTLLN-----AGALKNLLENEFPLHQAATLEDTKIVKILLFS- 84 (285)
T ss_dssp HHHHHHHHSTTTTCCCTTSCCHHHHHHHT--TCHHHHHHHHH-----TTGGGSCCTTCCHHHHHTTSSSCHHHHHHHHT-
T ss_pred HHHHHHHHhCCCCccCCCCCCHHHHHHHc--CCHHHHHHHHh-----CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHC-
Q ss_pred HHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHH---HHHHHHHHhcCcccHHHHHHHHHHHHHcCC
Q 042546 328 RSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCC---TFLLRKIVVSKQLDMRLFSKVVRVFRENGN 404 (671)
Q Consensus 328 ~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~---~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (671)
...+......-.+.+...+..|+.+-+..+++. |..++.... .+.+...+..+..+ +++.+.+.|.
T Consensus 85 -ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~----ga~~~~~~~~g~~t~L~~A~~~~~~~------~v~~Ll~~g~ 153 (285)
T 3kea_A 85 -GLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKK----NWRLMFYGKTGWKTSFYHAVMLNDVS------IVSYFLSEIP 153 (285)
T ss_dssp -TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHH----CGGGGGCSSSGGGSHHHHHHHTTCHH------HHHHHHTTSC
T ss_pred -CCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhc----CCCCCccCCCCCCCHHHHHHHcCCHH------HHHHHHhCCC
Q ss_pred CCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 042546 405 VLTDA-MLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVS 483 (671)
Q Consensus 405 ~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ 483 (671)
.+... .-.+.+...+..|+.+-+..+++.-.... ..|..-++..+...++.|+ .++.+.+.+.|..++......
T Consensus 154 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n-~~~~~g~t~~L~~A~~~~~----~~~v~~Ll~~gad~~~~~~~a 228 (285)
T 3kea_A 154 STFDLAILLSCIHITIKNGHVDMMILLLDYMTSTN-TNNSLLFIPDIKLAIDNKD----IEMLQALFKYDINIYSANLEN 228 (285)
T ss_dssp TTCCCSTHHHHHHHHHHTTCHHHHHHHHHHHHHTC-TTCCCBCCTTHHHHHHHTC----HHHHHHHTTSCBCSTTTTGGG
T ss_pred ccccccCCccHHHHHHHcChHHHHHHHHHcCCCCC-cccCCCCChHHHHHHHcCC----HHHHHHHHHcCCCCCCCChhh
Q ss_pred HHHHHHhcCCHHHHHHHHHH
Q 042546 484 LIKGHCVAGDLDKAADCFQK 503 (671)
Q Consensus 484 li~~~~~~g~~~~a~~~~~~ 503 (671)
+..|+.+-+.-+++.
T Consensus 229 -----~~~~~~~iv~~Ll~~ 243 (285)
T 3kea_A 229 -----VLLDDAEIAKMIIEK 243 (285)
T ss_dssp -----GTTTCHHHHHHHHHH
T ss_pred -----hhcCCHHHHHHHHHc
No 309
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=20.87 E-value=3.9e+02 Score=22.72 Aligned_cols=183 Identities=10% Similarity=0.038 Sum_probs=0.0
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 042546 396 VRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSD 475 (671)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 475 (671)
+..+.+.=..++..+-...+..+.+.|..+....+.+.+. .+|...-...+.++.+.+..+....+.+.+. .
T Consensus 21 ~~~L~~~L~~~~~~vR~~A~~~L~~~~~~~~~~~L~~~l~----~~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~----~ 92 (211)
T 3ltm_A 21 VEMYIKNLQDDSYYVRRAAAYALGKIGDERAVEPLIKALK----DEDAWVRRAAADALGQIGDERAVEPLIKALK----D 92 (211)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTT----CSCHHHHHHHHHHHHHHCCGGGHHHHHHHTT----C
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhCCccHHHHHHHHHc----CCCHHHHHHHHHHHHhhCCHHHHHHHHHHHc----C
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHH
Q 042546 476 VGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEE 555 (671)
Q Consensus 476 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ 555 (671)
+|...-...+.++.+.+..+....+.+.+.. ++..+-...+.++.+.|..+....+...+... +..+-..
T Consensus 93 ~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d-----~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~-----~~~vr~~ 162 (211)
T 3ltm_A 93 EDGWVRQSAAVALGQIGDERAVEPLIKALKD-----EDWFVRIAAAFALGEIGDERAVEPLIKALKDE-----DGWVRQS 162 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCGGGHHHHHHHTTC-----SSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCS-----SHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCcHHHHHHHHHHHhC-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHcCC-----CHHHHHH
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHhcCC
Q 042546 556 LIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPFIKYVSKSGT 597 (671)
Q Consensus 556 li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~t~~~~l~~~g~ 597 (671)
.+.++.+.+. .++...+..+.+.+-..-...-..++...+.
T Consensus 163 a~~aL~~~~~-~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~ 203 (211)
T 3ltm_A 163 AADALGEIGG-ERVRAAMEKLAETGTGFARKVAVNYLETHKS 203 (211)
T ss_dssp HHHHHHHHCS-HHHHHHHHHHHHHCCHHHHHHHHHHHHC---
T ss_pred HHHHHHHhCc-hhHHHHHHHHHhCCCHHHHHHHHHHHHhcCC
No 310
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=20.58 E-value=2.9e+02 Score=22.27 Aligned_cols=60 Identities=18% Similarity=0.170 Sum_probs=0.0
Q ss_pred HHHHHHHhCCCCCCH--HHHHHHHHhcCChHHHHHHHHHhhhCCC-CCHHHHHHHHHHHHHcC
Q 042546 571 SLLCLMKDHGFPPFV--DPFIKYVSKSGTSDDAIAFLKGMTSKRF-PSMSVVLCLFAAFFQAR 630 (671)
Q Consensus 571 ~l~~~m~~~~~~p~~--~t~~~~l~~~g~~~~A~~~~~~m~~~~~-p~~~~~~~l~~~~~~~g 630 (671)
++.+.+.+.|++++. ..++..+...+..-.|.++++.+.+.++ .+..|..--++.+...|
T Consensus 8 ~~~~~l~~~g~r~T~qR~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 70 (145)
T 2fe3_A 8 EALETLKETGVRITPQRHAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESG 70 (145)
T ss_dssp HHHHHHHHTTCCCCHHHHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCC
No 311
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=20.03 E-value=4e+02 Score=25.73 Aligned_cols=129 Identities=12% Similarity=0.132 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCCH--HHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 042546 412 NSVLKALISVGRMGECNKILKAMEEGGFIAS---SNMKSKIAFRLSSAGKK--DEANEFMDHMEASGSDVGDKMWVSLIK 486 (671)
Q Consensus 412 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~---~~~~~~li~~~~~~g~~--~~A~~~~~~m~~~g~~~~~~~~~~li~ 486 (671)
.++|.-|...|++++|.+.++++. .|+ ......+|......++. +.+-.++..+...|+-+.......+..
T Consensus 16 ~~ii~EY~~~~D~~Ea~~~l~eL~----~p~~~~~~~v~~~i~~aLer~~~~re~~~~LL~~L~~~~~ls~~~~~~Gf~~ 91 (364)
T 3l6a_A 16 ETVVTEYLNSGNANEAVNGVREMR----APKHFLPEMLSKVIILSLDRSDEDKEKASSLISLLKQEGIATSDNFMQAFLN 91 (364)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHT----CCGGGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhC----CchhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Q ss_pred HHHhcC----CHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC
Q 042546 487 GHCVAG----DLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYD 545 (671)
Q Consensus 487 ~~~~~g----~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 545 (671)
.+.... ++..|..++.++.. .-+.-+..+.+.+-..+...+...-...++..+.+..|
T Consensus 92 lle~l~Dl~iDiP~a~~~la~f~a-r~i~~~~l~~~~l~~~l~~G~~~~l~l~vl~~~~k~~G 153 (364)
T 3l6a_A 92 VLDQCPKLEVDIPLVKSYLAQFAA-RAIISELVSISELAQPLESGTHFPLFLLCLQQLAKLQD 153 (364)
T ss_dssp HHHTHHHHHHHCTTHHHHHHHHHH-HHHHTTSSCHHHHHHHHGGGTTTTHHHHHHHHHHHHSC
T ss_pred HHhhChHhccccccHHHHHHHHHH-HHHHcCCCCHHHHHHHhcccchHHHHHHHHHHHHHhcC
Done!