BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 042552
         (179 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3KQ4|A Chain A, Structure Of Intrinsic Factor-Cobalamin Bound To Its
           Receptor Cubilin
 pdb|3KQ4|C Chain C, Structure Of Intrinsic Factor-Cobalamin Bound To Its
           Receptor Cubilin
 pdb|3KQ4|E Chain E, Structure Of Intrinsic Factor-Cobalamin Bound To Its
           Receptor Cubilin
          Length = 393

 Score = 27.3 bits (59), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 14/33 (42%), Positives = 21/33 (63%)

Query: 20  ASSVSIVICNKALMSNLGFPFATTLTSWHLMVT 52
           + SV +V+  +A   N  F F TT+TSW L+V+
Sbjct: 315 SGSVLLVVLEEAQRKNPMFKFETTMTSWGLVVS 347


>pdb|2PMV|A Chain A, Crystal Structure Of Human Intrinsic Factor- Cobalamin
           Complex At 2.6 A Resolution
 pdb|2PMV|B Chain B, Crystal Structure Of Human Intrinsic Factor- Cobalamin
           Complex At 2.6 A Resolution
 pdb|2PMV|C Chain C, Crystal Structure Of Human Intrinsic Factor- Cobalamin
           Complex At 2.6 A Resolution
 pdb|2PMV|D Chain D, Crystal Structure Of Human Intrinsic Factor- Cobalamin
           Complex At 2.6 A Resolution
          Length = 399

 Score = 26.9 bits (58), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 14/33 (42%), Positives = 21/33 (63%)

Query: 20  ASSVSIVICNKALMSNLGFPFATTLTSWHLMVT 52
           + SV +V+  +A   N  F F TT+TSW L+V+
Sbjct: 321 SGSVLLVVLEEAQRKNPMFKFETTMTSWGLVVS 353


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.331    0.139    0.413 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,460,606
Number of Sequences: 62578
Number of extensions: 89230
Number of successful extensions: 139
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 137
Number of HSP's gapped (non-prelim): 2
length of query: 179
length of database: 14,973,337
effective HSP length: 93
effective length of query: 86
effective length of database: 9,153,583
effective search space: 787208138
effective search space used: 787208138
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 48 (23.1 bits)