Query 042552
Match_columns 179
No_of_seqs 141 out of 1071
Neff 8.2
Searched_HMMs 46136
Date Fri Mar 29 07:16:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042552.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042552hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1441 Glucose-6-phosphate/ph 100.0 5.8E-32 1.3E-36 221.6 10.9 172 3-174 10-185 (316)
2 KOG1444 Nucleotide-sugar trans 100.0 1E-27 2.2E-32 193.8 16.0 173 3-175 5-180 (314)
3 PTZ00343 triose or hexose phos 99.9 1.7E-26 3.7E-31 193.4 17.9 167 6-174 45-216 (350)
4 TIGR00817 tpt Tpt phosphate/ph 99.9 2.2E-25 4.7E-30 182.9 15.6 163 9-173 1-166 (302)
5 KOG1443 Predicted integral mem 99.9 1E-22 2.2E-27 163.6 11.2 162 7-170 13-182 (349)
6 COG5070 VRG4 Nucleotide-sugar 99.8 2.9E-21 6.2E-26 149.5 7.5 169 8-176 4-179 (309)
7 KOG1442 GDP-fucose transporter 99.8 1.4E-21 3E-26 155.1 3.5 167 6-172 24-205 (347)
8 PF08449 UAA: UAA transporter 99.8 2.6E-19 5.7E-24 147.2 16.6 155 19-173 9-175 (303)
9 KOG1582 UDP-galactose transpor 99.6 9.8E-15 2.1E-19 116.3 9.4 150 22-171 55-209 (367)
10 KOG1581 UDP-galactose transpor 99.4 9.7E-12 2.1E-16 100.5 15.2 147 25-171 29-191 (327)
11 PF06027 DUF914: Eukaryotic pr 99.3 1.9E-10 4.1E-15 95.7 15.7 149 24-173 27-189 (334)
12 KOG1580 UDP-galactose transpor 99.2 1.4E-11 3.1E-16 96.6 5.6 131 36-166 48-186 (337)
13 TIGR00950 2A78 Carboxylate/Ami 99.2 3.5E-10 7.7E-15 90.3 13.6 142 27-173 6-149 (260)
14 KOG1583 UDP-N-acetylglucosamin 99.2 2.9E-11 6.3E-16 96.7 5.7 149 22-172 15-184 (330)
15 PRK11453 O-acetylserine/cystei 99.2 2.2E-09 4.8E-14 88.1 16.2 157 5-173 3-164 (299)
16 PRK11689 aromatic amino acid e 99.1 4.4E-09 9.5E-14 86.2 16.9 154 11-173 9-177 (295)
17 PRK11272 putative DMT superfam 99.1 5.2E-09 1.1E-13 85.6 16.8 143 27-173 25-171 (292)
18 PRK15430 putative chlorampheni 99.1 3.9E-09 8.4E-14 86.6 15.0 159 7-174 6-171 (296)
19 PLN00411 nodulin MtN21 family 99.1 7.5E-09 1.6E-13 87.2 15.0 167 5-173 8-210 (358)
20 PRK10532 threonine and homoser 99.0 4.2E-08 9.2E-13 80.3 15.6 141 24-173 26-169 (293)
21 TIGR00688 rarD rarD protein. T 99.0 3.7E-08 8E-13 78.9 14.7 139 27-173 19-167 (256)
22 PF04142 Nuc_sug_transp: Nucle 99.0 4.8E-09 1E-13 84.0 9.4 100 74-173 19-135 (244)
23 PF00892 EamA: EamA-like trans 98.9 1.3E-08 2.7E-13 71.9 8.7 114 25-142 6-124 (126)
24 COG0697 RhaT Permeases of the 98.9 4.4E-07 9.6E-12 72.7 18.0 133 41-173 36-175 (292)
25 TIGR03340 phn_DUF6 phosphonate 98.7 6.1E-07 1.3E-11 73.0 14.8 99 75-173 66-165 (281)
26 KOG2765 Predicted membrane pro 98.7 9.6E-08 2.1E-12 79.6 8.8 102 74-175 157-270 (416)
27 PF13536 EmrE: Multidrug resis 98.5 7E-07 1.5E-11 63.1 7.5 77 71-148 33-110 (113)
28 KOG3912 Predicted integral mem 98.5 2.1E-06 4.5E-11 69.4 10.7 156 20-176 13-199 (372)
29 TIGR00950 2A78 Carboxylate/Ami 98.4 2.3E-05 5E-10 62.4 14.5 125 14-139 132-259 (260)
30 TIGR00776 RhaT RhaT L-rhamnose 98.3 4.5E-05 9.7E-10 62.6 14.6 103 71-173 54-173 (290)
31 KOG2234 Predicted UDP-galactos 98.1 0.00029 6.2E-09 58.7 15.1 161 13-173 18-204 (345)
32 PRK15051 4-amino-4-deoxy-L-ara 98.0 0.00013 2.7E-09 51.6 10.0 73 70-142 32-107 (111)
33 COG2510 Predicted membrane pro 97.8 0.00047 1E-08 49.7 10.0 123 19-144 12-139 (140)
34 PF03151 TPT: Triose-phosphate 97.8 0.0012 2.6E-08 48.3 12.5 123 20-143 10-152 (153)
35 PRK11272 putative DMT superfam 97.7 0.001 2.2E-08 54.3 12.0 106 41-146 177-287 (292)
36 KOG4510 Permease of the drug/m 97.6 1.9E-05 4.1E-10 63.6 1.4 156 4-166 33-205 (346)
37 PLN00411 nodulin MtN21 family 97.5 0.0026 5.6E-08 53.8 12.6 116 27-144 206-328 (358)
38 KOG4314 Predicted carbohydrate 97.5 8.2E-05 1.8E-09 57.6 3.0 101 72-172 53-155 (290)
39 KOG2766 Predicted membrane pro 97.4 9.3E-05 2E-09 59.3 2.7 137 5-146 13-152 (336)
40 TIGR00817 tpt Tpt phosphate/ph 97.4 0.0015 3.2E-08 53.5 9.3 120 24-144 159-293 (302)
41 PRK10532 threonine and homoser 97.3 0.0083 1.8E-07 49.0 13.1 69 76-144 212-281 (293)
42 PRK11689 aromatic amino acid e 97.3 0.0062 1.3E-07 49.8 12.1 69 76-144 219-287 (295)
43 TIGR03340 phn_DUF6 phosphonate 97.3 0.0015 3.3E-08 53.0 8.0 62 80-141 219-280 (281)
44 PRK10452 multidrug efflux syst 97.2 0.0026 5.6E-08 45.6 7.5 73 73-145 31-104 (120)
45 PRK11453 O-acetylserine/cystei 97.1 0.021 4.6E-07 46.7 13.1 72 75-146 217-289 (299)
46 PTZ00343 triose or hexose phos 97.1 0.022 4.8E-07 47.9 13.4 125 18-143 202-347 (350)
47 PRK15430 putative chlorampheni 97.0 0.03 6.6E-07 45.8 13.2 65 78-142 219-283 (296)
48 COG5006 rhtA Threonine/homoser 96.9 0.05 1.1E-06 43.8 13.2 136 28-172 30-168 (292)
49 TIGR00776 RhaT RhaT L-rhamnose 96.8 0.021 4.6E-07 46.7 10.7 69 75-143 214-287 (290)
50 PRK11431 multidrug efflux syst 96.8 0.0063 1.4E-07 42.5 6.4 69 74-142 31-100 (105)
51 PRK09541 emrE multidrug efflux 96.7 0.0058 1.3E-07 43.1 6.2 68 77-144 35-103 (110)
52 PRK02971 4-amino-4-deoxy-L-ara 96.7 0.0057 1.2E-07 44.3 6.3 71 76-146 51-124 (129)
53 COG2076 EmrE Membrane transpor 96.6 0.0067 1.5E-07 42.4 5.7 70 73-142 31-101 (106)
54 TIGR00803 nst UDP-galactose tr 96.6 0.0021 4.7E-08 50.3 3.6 78 96-173 2-106 (222)
55 COG0697 RhaT Permeases of the 96.6 0.096 2.1E-06 41.6 13.2 74 71-144 213-287 (292)
56 PRK10650 multidrug efflux syst 96.6 0.011 2.3E-07 41.7 6.6 67 75-141 38-105 (109)
57 PF08449 UAA: UAA transporter 96.5 0.05 1.1E-06 44.7 11.0 133 11-144 155-297 (303)
58 PF06027 DUF914: Eukaryotic pr 96.3 0.086 1.9E-06 44.3 11.4 60 88-147 249-308 (334)
59 PF00893 Multi_Drug_Res: Small 96.1 0.035 7.5E-07 37.8 6.7 56 80-135 37-93 (93)
60 PF05653 Mg_trans_NIPA: Magnes 96.0 0.057 1.2E-06 44.6 8.8 70 74-143 51-121 (300)
61 COG2962 RarD Predicted permeas 95.7 0.27 5.8E-06 40.3 11.3 150 10-171 8-167 (293)
62 TIGR00803 nst UDP-galactose tr 95.4 0.72 1.6E-05 35.9 12.9 132 8-141 83-221 (222)
63 PF10639 UPF0546: Uncharacteri 95.0 0.058 1.3E-06 38.2 4.9 70 72-142 42-112 (113)
64 PF06800 Sugar_transport: Suga 94.4 0.25 5.4E-06 40.2 7.8 99 74-172 47-158 (269)
65 PF06800 Sugar_transport: Suga 94.2 1.4 3E-05 35.9 11.7 101 41-141 164-268 (269)
66 COG2962 RarD Predicted permeas 90.6 7.2 0.00016 32.1 11.4 71 74-144 213-283 (293)
67 KOG2922 Uncharacterized conser 89.5 0.47 1E-05 39.5 3.7 71 74-144 65-136 (335)
68 COG5006 rhtA Threonine/homoser 88.6 0.78 1.7E-05 37.1 4.3 70 73-142 206-280 (292)
69 PF04657 DUF606: Protein of un 82.6 16 0.00035 26.5 11.0 113 26-141 17-138 (138)
70 PF04142 Nuc_sug_transp: Nucle 82.5 23 0.0005 28.3 12.5 123 8-133 112-242 (244)
71 PRK13499 rhamnose-proton sympo 81.5 7.2 0.00016 33.0 7.1 96 75-170 76-192 (345)
72 COG5070 VRG4 Nucleotide-sugar 77.5 19 0.00042 28.9 7.9 124 14-138 159-290 (309)
73 KOG1444 Nucleotide-sugar trans 72.1 18 0.00039 30.2 6.8 29 144-172 275-303 (314)
74 KOG2765 Predicted membrane pro 67.5 71 0.0015 27.6 9.4 124 25-148 263-394 (416)
75 KOG1441 Glucose-6-phosphate/ph 63.1 16 0.00035 30.5 4.9 45 12-57 165-211 (316)
76 COG3949 Uncharacterized membra 55.3 39 0.00085 28.6 5.8 27 93-119 240-266 (349)
77 PF04342 DUF486: Protein of un 54.2 54 0.0012 22.9 5.4 60 82-141 45-105 (108)
78 KOG4831 Unnamed protein [Funct 44.3 17 0.00037 25.5 1.8 70 72-142 53-123 (125)
79 COG3296 Uncharacterized protei 43.3 1.3E+02 0.0028 21.9 6.5 66 97-162 41-107 (143)
80 KOG2234 Predicted UDP-galactos 43.1 2.1E+02 0.0045 24.3 12.6 139 3-143 176-321 (345)
81 COG2510 Predicted membrane pro 40.0 87 0.0019 22.9 4.9 47 76-122 9-55 (140)
82 TIGR00688 rarD rarD protein. T 34.7 2.2E+02 0.0048 22.2 10.1 48 71-118 207-254 (256)
83 PF06946 Phage_holin_5: Phage 33.8 1.5E+02 0.0032 20.2 5.0 49 125-173 31-84 (93)
84 COG3104 PTR2 Dipeptide/tripept 33.7 1.3E+02 0.0027 27.0 5.9 34 28-61 174-207 (498)
85 PF06379 RhaT: L-rhamnose-prot 32.3 1.7E+02 0.0036 24.9 6.1 96 74-170 75-191 (344)
86 PF02673 BacA: Bacitracin resi 24.9 3.7E+02 0.0081 21.7 8.9 80 5-86 75-158 (259)
87 PF06813 Nodulin-like: Nodulin 22.1 4.2E+02 0.009 21.2 8.4 58 5-62 127-184 (250)
No 1
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=99.97 E-value=5.8e-32 Score=221.59 Aligned_cols=172 Identities=33% Similarity=0.446 Sum_probs=163.0
Q ss_pred CcccchHHHHHHHHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHHHHHHHHHHHHHHHcCCCccCc----cchhHHHHH
Q 042552 3 EMSSFQLGVIGALFLSVASSVSIVICNKALMSNLGFPFATTLTSWHLMVTFCTLHAAQRLNFFESKA----VDVKTVMLF 78 (179)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~S~~~~~~NK~ll~~~~f~~p~~lt~~q~~~~~~~~~i~~~~~~~~~~~----~~~~~~lp~ 78 (179)
+++++..+...+...|+.+|++.++.||+++++++||||+++|.+|..++++...+.+..+..++++ .+++.++|+
T Consensus 10 ~~~~~~~~~~~~~~~w~~~~v~~~~~nK~il~~~~f~~p~~lt~~~~~~~~l~~~v~~~l~~~~~~~~~~~~~~~~llpl 89 (316)
T KOG1441|consen 10 GQLKKILRIGIAFAIWYVLSVGVIILNKYILSKYGFPFPITLTMLHLFCGALALLVIKVLKLVPPSKISSKLPLRTLLPL 89 (316)
T ss_pred cccchhHHHHHHHHHHhhhheeeEEeeHhhhccCCCCCccHHHHHHHHHHHHHHHHHHHhcCCCCCccccccchHHHHHH
Confidence 4667788889999999999999999999999999999999999999999999999999888877655 678999999
Q ss_pred HHHHHHHhhhcccccccchhhHHHHHhHHHHHHHHHHHHHHhccccChhhhhHHhHhhhhheeeeecCccchHHHHHHHH
Q 042552 79 GILNGISIGLLNLSLGFNSVGFYQMTKLAIIPFTVLLETLFLKKQFSQKIKFSLFLLLVGVGIASVTDLQLNMVGTILSL 158 (179)
Q Consensus 79 ~l~~~~~~~~~n~sl~~~sv~~~~i~k~~~~~~~~~~~~~~~~~~~s~~~~~sl~li~~Gv~~~~~~d~~~~~~G~~~~l 158 (179)
|++++++++++|.|++|+||||+|++|+++||+++++++++.+|+++..+++++.+++.||++++.+|.+||+.|++.++
T Consensus 90 ~~~~~~~~v~~n~Sl~~v~VsF~q~iKa~~P~~tvl~~~~~~~~~~s~~~~lsL~piv~GV~ias~~e~~fn~~G~i~a~ 169 (316)
T KOG1441|consen 90 GLVFCISHVLGNVSLSYVPVSFYQTIKALMPPFTVLLSVLLLGKTYSSMTYLSLLPIVFGVAIASVTELSFNLFGFISAM 169 (316)
T ss_pred HHHHHHHHHhcchhhhccchhHHHHHHhhcchhHHHHHHHHhCCCCcceEEEEEEEeeeeEEEeeeccccccHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHccc
Q 042552 159 LAIVTTCVGQIVSFFK 174 (179)
Q Consensus 159 ~s~~~~a~~~i~~~~k 174 (179)
.+.+.+++++|+.++.
T Consensus 170 ~s~~~~al~~I~~~~l 185 (316)
T KOG1441|consen 170 ISNLAFALRNILSKKL 185 (316)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999999998543
No 2
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=1e-27 Score=193.83 Aligned_cols=173 Identities=23% Similarity=0.240 Sum_probs=164.2
Q ss_pred CcccchHHHHHHHHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHHHHHHHHHHHHHHHcCCCccCccch---hHHHHHH
Q 042552 3 EMSSFQLGVIGALFLSVASSVSIVICNKALMSNLGFPFATTLTSWHLMVTFCTLHAAQRLNFFESKAVDV---KTVMLFG 79 (179)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~S~~~~~~NK~ll~~~~f~~p~~lt~~q~~~~~~~~~i~~~~~~~~~~~~~~---~~~lp~~ 79 (179)
|..+++.+...+.+.|+.+|+.+++.||+++++|+||..+++...|.+.+.++.++.++.|.++.|++++ |+++|++
T Consensus 5 ~~~~~~~~~l~sa~~Y~~sS~lm~vvNK~vls~y~f~~~l~l~~~Q~l~s~~~v~~lk~~~lv~~~~l~~~~~kk~~P~~ 84 (314)
T KOG1444|consen 5 EGSKKQSSPLLSALFYCLSSILMTVVNKIVLSSYNFPMGLLLMLLQSLASVLVVLVLKRLGLVNFRPLDLRTAKKWFPVS 84 (314)
T ss_pred ccchhhhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHhceeecCCcChHHHHHHccHH
Confidence 5667788889999999999999999999999999988888888899999999999999999998887664 7899999
Q ss_pred HHHHHHhhhcccccccchhhHHHHHhHHHHHHHHHHHHHHhccccChhhhhHHhHhhhhheeeeecCccchHHHHHHHHH
Q 042552 80 ILNGISIGLLNLSLGFNSVGFYQMTKLAIIPFTVLLETLFLKKQFSQKIKFSLFLLLVGVGIASVTDLQLNMVGTILSLL 159 (179)
Q Consensus 80 l~~~~~~~~~n~sl~~~sv~~~~i~k~~~~~~~~~~~~~~~~~~~s~~~~~sl~li~~Gv~~~~~~d~~~~~~G~~~~l~ 159 (179)
+.+.+++.++..|++|+|+|+++++|+.+|..+++.|..++|++++++.+.++..+.+|......+|.++|..|+.|+..
T Consensus 85 ~lf~~~i~t~~~slk~lnVpm~tv~kn~tii~~ai~E~lf~~~~~~~~v~~Sv~~m~~~s~~~~~~d~sf~~~gY~w~~~ 164 (314)
T KOG1444|consen 85 LLFVGMLFTGSKSLKYLNVPMFTVFKNLTIILTAIGEVLFFGKRPSNKVWASVFAMIIGSVAAAFTDLSFNLRGYSWALA 164 (314)
T ss_pred HHHHHHHHHccccccccCchHHHHHhhchHHHHHHhHHhhcCcCchhhHHHHHHHHHHHHHhhccccceecchhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcccc
Q 042552 160 AIVTTCVGQIVSFFKW 175 (179)
Q Consensus 160 s~~~~a~~~i~~~~k~ 175 (179)
+++.++.+.++.|||.
T Consensus 165 n~~~~a~~~v~~kk~v 180 (314)
T KOG1444|consen 165 NCLTTAAFVVYVKKSV 180 (314)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 9999999999998874
No 3
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=99.95 E-value=1.7e-26 Score=193.42 Aligned_cols=167 Identities=23% Similarity=0.244 Sum_probs=149.6
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHHHHHHHHHHHHHHHcCCCccC-----ccchhHHHHHHH
Q 042552 6 SFQLGVIGALFLSVASSVSIVICNKALMSNLGFPFATTLTSWHLMVTFCTLHAAQRLNFFESK-----AVDVKTVMLFGI 80 (179)
Q Consensus 6 ~~~~~~~~~~~~~~~~S~~~~~~NK~ll~~~~f~~p~~lt~~q~~~~~~~~~i~~~~~~~~~~-----~~~~~~~lp~~l 80 (179)
.+..+....++.|+.+|+..++.||+++++ +|||++++.+|++++++.+.+....+..+.+ +.++++++|+|+
T Consensus 45 ~~~~~~~~~~~~wy~~s~~~~~~nK~vl~~--~~~P~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~llp~gl 122 (350)
T PTZ00343 45 NFKWKLALLFLTWYALNVLYVVDNKLALNM--LPLPWTISSLQLFVGWLFALLYWATGFRKIPRIKSLKLFLKNFLPQGL 122 (350)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHh--CChhHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHH
Confidence 457899999999999999999999999984 7899999999999998877666554433322 235678999999
Q ss_pred HHHHHhhhcccccccchhhHHHHHhHHHHHHHHHHHHHHhccccChhhhhHHhHhhhhheeeeecCccchHHHHHHHHHH
Q 042552 81 LNGISIGLLNLSLGFNSVGFYQMTKLAIIPFTVLLETLFLKKQFSQKIKFSLFLLLVGVGIASVTDLQLNMVGTILSLLA 160 (179)
Q Consensus 81 ~~~~~~~~~n~sl~~~sv~~~~i~k~~~~~~~~~~~~~~~~~~~s~~~~~sl~li~~Gv~~~~~~d~~~~~~G~~~~l~s 160 (179)
++.......|.|+++.|++++|++|+++|.++++++++++|||++++++++++++++|+++++.+|.++++.|.+++++|
T Consensus 123 ~~~~~~~~~~~sl~~~svs~~~iika~~Pvft~lls~~~l~ek~s~~~~l~l~l~v~Gv~l~~~~~~~~~~~G~~~~l~s 202 (350)
T PTZ00343 123 CHLFVHFGAVISMGLGAVSFTHVVKAAEPVFTALLSILFLKQFLNLYAYLSLIPIVGGVALASVKELHFTWLAFWCAMLS 202 (350)
T ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHheecccchhHHHHHHHHHHH
Confidence 98887778899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHccc
Q 042552 161 IVTTCVGQIVSFFK 174 (179)
Q Consensus 161 ~~~~a~~~i~~~~k 174 (179)
.++.|+|+++.|+.
T Consensus 203 ~~~~a~~~i~~k~~ 216 (350)
T PTZ00343 203 NLGSSLRSIFAKKT 216 (350)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999998653
No 4
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=99.93 E-value=2.2e-25 Score=182.89 Aligned_cols=163 Identities=25% Similarity=0.220 Sum_probs=146.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHHHHHHHHHHHHHHHcCCCc---cCccchhHHHHHHHHHHHH
Q 042552 9 LGVIGALFLSVASSVSIVICNKALMSNLGFPFATTLTSWHLMVTFCTLHAAQRLNFFE---SKAVDVKTVMLFGILNGIS 85 (179)
Q Consensus 9 ~~~~~~~~~~~~~S~~~~~~NK~ll~~~~f~~p~~lt~~q~~~~~~~~~i~~~~~~~~---~~~~~~~~~lp~~l~~~~~ 85 (179)
+++...++.|+++|++++++||++++ .|++|.++++.|+.++++.+.+.+..+..+ .++.+++.++|.|++++.+
T Consensus 1 ~~~~~~~~~w~~~~~~~~~~NK~~l~--~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 78 (302)
T TIGR00817 1 LQTGLLFGLWYFLNVYFNIYNKKLLN--VFPYPYFKTLISLAVGSLYCLLSWSSGLPKRLKISSALLKLLLPVAIVHTIG 78 (302)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHh--hCChhHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 36788999999999999999999998 478999999999999998887775433222 2445678899999999999
Q ss_pred hhhcccccccchhhHHHHHhHHHHHHHHHHHHHHhccccChhhhhHHhHhhhhheeeeecCccchHHHHHHHHHHHHHHH
Q 042552 86 IGLLNLSLGFNSVGFYQMTKLAIIPFTVLLETLFLKKQFSQKIKFSLFLLLVGVGIASVTDLQLNMVGTILSLLAIVTTC 165 (179)
Q Consensus 86 ~~~~n~sl~~~sv~~~~i~k~~~~~~~~~~~~~~~~~~~s~~~~~sl~li~~Gv~~~~~~d~~~~~~G~~~~l~s~~~~a 165 (179)
..++|.|++|.|++++|++|+++|+++++++++++|||++++++.++++.++|+++...+|.+++..|..+++++.++.|
T Consensus 79 ~~~~~~~l~~~s~s~~~li~~~~Pv~~~ll~~~~~~e~~~~~~~~~l~l~~~Gv~l~~~~~~~~~~~G~~~~l~a~~~~a 158 (302)
T TIGR00817 79 HVTSNVSLSKVAVSFTHTIKAMEPFFSVVLSAFFLGQEFPSTLWLSLLPIVGGVALASDTELSFNWAGFLSAMISNITFV 158 (302)
T ss_pred HHHHHHHHHhccHHHHHHHHhcchHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhhhcCCcccccHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999998877788889999999999999999
Q ss_pred HHHHHHcc
Q 042552 166 VGQIVSFF 173 (179)
Q Consensus 166 ~~~i~~~~ 173 (179)
+|+++.|+
T Consensus 159 ~~~v~~k~ 166 (302)
T TIGR00817 159 SRNIFSKK 166 (302)
T ss_pred HHHHHHHH
Confidence 99999865
No 5
>KOG1443 consensus Predicted integral membrane protein [Function unknown]
Probab=99.89 E-value=1e-22 Score=163.58 Aligned_cols=162 Identities=23% Similarity=0.323 Sum_probs=141.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHHHHHHHHHHHHHHHcCCC-ccC---ccch----hHHHHH
Q 042552 7 FQLGVIGALFLSVASSVSIVICNKALMSNLGFPFATTLTSWHLMVTFCTLHAAQRLNFF-ESK---AVDV----KTVMLF 78 (179)
Q Consensus 7 ~~~~~~~~~~~~~~~S~~~~~~NK~ll~~~~f~~p~~lt~~q~~~~~~~~~i~~~~~~~-~~~---~~~~----~~~lp~ 78 (179)
++..+++.++.||.+|+++.++||+.-. +|+||++++.+|+++-+++....++.... .++ ..+| |++.|.
T Consensus 13 ~rV~~L~lVl~yY~~Si~Ltf~~~~~~~--~f~fPLf~ts~h~~v~flfa~~~~~l~~~~~~r~r~~~sw~~~Lr~~aPt 90 (349)
T KOG1443|consen 13 NRVLTLALVLLYYFLSIGLTFYFKWLTK--NFHFPLFVTSLHLAVKFLFAALSRRLYQCSVPRARVVLSWRDYLRRLAPT 90 (349)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhc--CcCCchHHHHHHHHHHHHHHHHHHHHHhccCCccccCCcHHHHHHHhhhh
Confidence 4566788899999999999999999976 57889999999999999988776553221 222 3444 566799
Q ss_pred HHHHHHHhhhcccccccchhhHHHHHhHHHHHHHHHHHHHHhccccChhhhhHHhHhhhhheeeeecCccchHHHHHHHH
Q 042552 79 GILNGISIGLLNLSLGFNSVGFYQMTKLAIIPFTVLLETLFLKKQFSQKIKFSLFLLLVGVGIASVTDLQLNMVGTILSL 158 (179)
Q Consensus 79 ~l~~~~~~~~~n~sl~~~sv~~~~i~k~~~~~~~~~~~~~~~~~~~s~~~~~sl~li~~Gv~~~~~~d~~~~~~G~~~~l 158 (179)
+++.+.++.++|+|++|+++++|+|.|++++.++.+++..+.-||+++.-.+.+.++..|+++.++++.++|..|+.+..
T Consensus 91 alata~DIGLSN~sl~yVtlSlYTM~KSSsi~FIllFs~if~lEk~~w~L~l~v~lI~~Glflft~KsTqf~i~Gf~lv~ 170 (349)
T KOG1443|consen 91 ALATALDIGLSNWSLEYVTLSLYTMTKSSSILFILLFSLIFKLEKFRWALVLIVLLIAVGLFLFTYKSTQFNIEGFFLVL 170 (349)
T ss_pred hhhhhcccccccceeeeeeeeeeeeccccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhheeEEEecccceeehhHHHHH
Confidence 99999999999999999999999999999999998888888889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH
Q 042552 159 LAIVTTCVGQIV 170 (179)
Q Consensus 159 ~s~~~~a~~~i~ 170 (179)
.++++.++.-.+
T Consensus 171 ~aS~~sGlRW~~ 182 (349)
T KOG1443|consen 171 AASLLSGLRWAF 182 (349)
T ss_pred HHHHhhhhhHHH
Confidence 999999875443
No 6
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=99.84 E-value=2.9e-21 Score=149.54 Aligned_cols=169 Identities=20% Similarity=0.186 Sum_probs=155.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHHHHHHHHHHHHHHHcCCCccCccchhHHHHHHHHHHHHhh
Q 042552 8 QLGVIGALFLSVASSVSIVICNKALMSNLGFPFATTLTSWHLMVTFCTLHAAQRLNFFESKAVDVKTVMLFGILNGISIG 87 (179)
Q Consensus 8 ~~~~~~~~~~~~~~S~~~~~~NK~ll~~~~f~~p~~lt~~q~~~~~~~~~i~~~~~~~~~~~~~~~~~lp~~l~~~~~~~ 87 (179)
+.....+++.|+.+|+.+++.||+++++.||+....+.+.|-+.+.+.+.+.|+.|..+.+..+.|+|+|.+++-..+++
T Consensus 4 a~s~~~~~lsYc~sSIlmTltNKyVls~~gfnMnflll~vQSlvcvv~l~iLk~l~~~~fR~t~aK~WfpiSfLLv~MIy 83 (309)
T COG5070 4 AVSELTASLSYCFSSILMTLTNKYVLSNLGFNMNFLLLAVQSLVCVVGLLILKFLRLVEFRLTKAKKWFPISFLLVVMIY 83 (309)
T ss_pred ccccchHHHHHHHHHHHHHHhhHheecCCCCchhhHHHHHHHHHHHHHHHHHHHHhHhheehhhhhhhcCHHHHHHHHHH
Confidence 33446788999999999999999999999999999999999999999999999999988888889999999999999999
Q ss_pred hcccccccchhhHHHHHhHHHHHHHHHHHHHHhccccChhhhhHHhHhhhhheeeeecCccch-------HHHHHHHHHH
Q 042552 88 LLNLSLGFNSVGFYQMTKLAIIPFTVLLETLFLKKQFSQKIKFSLFLLLVGVGIASVTDLQLN-------MVGTILSLLA 160 (179)
Q Consensus 88 ~~n~sl~~~sv~~~~i~k~~~~~~~~~~~~~~~~~~~s~~~~~sl~li~~Gv~~~~~~d~~~~-------~~G~~~~l~s 160 (179)
.+..|++|.++|.|+++|+.+.++++..|..++|+|.+..+..+.+++++...++..+|.+-. -.|+.|+..+
T Consensus 84 t~SKsLqyL~vpiYTiFKNltII~iAygEvl~Fgg~vtsl~l~SFilMvlSS~va~w~D~q~~~~~~~~lN~GY~Wm~~N 163 (309)
T COG5070 84 TSSKSLQYLAVPIYTIFKNLTIILIAYGEVLFFGGRVTSLELLSFILMVLSSVVATWGDQQASAFKAQILNPGYLWMFTN 163 (309)
T ss_pred hcccceeeeeeeHHHHhccceeehhHhhHHHHhcCccchhhHHHHHHHHHHHHHhccchhhHHHHHhcccCCceEEEehh
Confidence 999999999999999999999999999999999999999999999999999999999998532 2599999999
Q ss_pred HHHHHHHHHHHccccc
Q 042552 161 IVTTCVGQIVSFFKWL 176 (179)
Q Consensus 161 ~~~~a~~~i~~~~k~~ 176 (179)
++.+|.+..-.|+|+=
T Consensus 164 clssaafVL~mrkri~ 179 (309)
T COG5070 164 CLSSAAFVLIMRKRIK 179 (309)
T ss_pred hHhHHHHHHHHHHhhc
Confidence 9999999888877653
No 7
>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.83 E-value=1.4e-21 Score=155.14 Aligned_cols=167 Identities=23% Similarity=0.293 Sum_probs=146.0
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHhhcc--CCCchHHHHHHHHHHHHHHHHHHHHH-----cCCCccCccc-----hh
Q 042552 6 SFQLGVIGALFLSVASSVSIVICNKALMSN--LGFPFATTLTSWHLMVTFCTLHAAQR-----LNFFESKAVD-----VK 73 (179)
Q Consensus 6 ~~~~~~~~~~~~~~~~S~~~~~~NK~ll~~--~~f~~p~~lt~~q~~~~~~~~~i~~~-----~~~~~~~~~~-----~~ 73 (179)
++..++......|..+|+++++.||++++. ...+-|.+.++.|.+.+..++...++ .+.++.++.+ .+
T Consensus 24 ~n~~~v~~~vs~ywv~SI~~vf~nk~llss~~~~Ld~plf~t~~qcLvt~~~c~~ls~ls~k~~~~ftfp~~~ldl~t~r 103 (347)
T KOG1442|consen 24 ANAKQVDSAVSLYWVTSIGLVFLNKHLLSSLVVILDAPLFITWYQCLVTTSICLVLSSLSVKYPGLFTFPSLQLDLATAR 103 (347)
T ss_pred HhhhchhhhccceeeeeehhhhhHHHHhhchhhhcCcHHHHHHHHHHHHHHHHHHHHHHHhhccceeccCcccccHHHHH
Confidence 345567778889999999999999999996 45678999999999999988877543 2344444433 47
Q ss_pred HHHHHHHHHHHHhhhcccccccchhhHHHHHhHHHHHHHHHHHHHHhccccChhhhhHHhHhhhhheeeeecC---ccch
Q 042552 74 TVMLFGILNGISIGLLNLSLGFNSVGFYQMTKLAIIPFTVLLETLFLKKQFSQKIKFSLFLLLVGVGIASVTD---LQLN 150 (179)
Q Consensus 74 ~~lp~~l~~~~~~~~~n~sl~~~sv~~~~i~k~~~~~~~~~~~~~~~~~~~s~~~~~sl~li~~Gv~~~~~~d---~~~~ 150 (179)
+++|+++.+..++.++|.+|+|++++||++-|+.+.|+++++.|+++|+|.+.....++.++++|.-+..-.| ..++
T Consensus 104 ~vlplsvVfi~mI~fnnlcL~yVgVaFYyvgRsLttvFtVlLtyvllkqkTs~~~~~~C~lIi~GF~lGvdqE~~~~~ls 183 (347)
T KOG1442|consen 104 QVLPLSVVFILMISFNNLCLKYVGVAFYYVGRSLTTVFTVLLTYVLLKQKTSFFALGCCLLIILGFGLGVDQEGSTGTLS 183 (347)
T ss_pred hhcchhheeeeehhccceehhhcceEEEEeccchhhhHHHHhHHhhcccccccccceeehhheehheeccccccccCccc
Confidence 8999999999999999999999999999999999999999999999999999999999999999987776666 5689
Q ss_pred HHHHHHHHHHHHHHHHHHHHHc
Q 042552 151 MVGTILSLLAIVTTCVGQIVSF 172 (179)
Q Consensus 151 ~~G~~~~l~s~~~~a~~~i~~~ 172 (179)
+.|.++++.++++.|+..+++|
T Consensus 184 ~~GvifGVlaSl~vAlnaiytk 205 (347)
T KOG1442|consen 184 WIGVIFGVLASLAVALNAIYTK 205 (347)
T ss_pred hhhhHHHHHHHHHHHHHHHhhh
Confidence 9999999999999999999995
No 8
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=99.83 E-value=2.6e-19 Score=147.20 Aligned_cols=155 Identities=21% Similarity=0.196 Sum_probs=131.9
Q ss_pred HHHHHHHHHHHHHhhccCCC-chHHHHHHHHHHHHHHHHHHHHHcCC-CccCccchhHHHHHHHHHHHHhhhcccccccc
Q 042552 19 VASSVSIVICNKALMSNLGF-PFATTLTSWHLMVTFCTLHAAQRLNF-FESKAVDVKTVMLFGILNGISIGLLNLSLGFN 96 (179)
Q Consensus 19 ~~~S~~~~~~NK~ll~~~~f-~~p~~lt~~q~~~~~~~~~i~~~~~~-~~~~~~~~~~~lp~~l~~~~~~~~~n~sl~~~ 96 (179)
+.+-..-.+++|.+.+.... ++|.++++.|+.++.+...+...... .++++.++++.++.++++.++..++|.|++|+
T Consensus 9 ~~~~~~~g~~qE~i~~~~~~~~~~~~lt~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~i 88 (303)
T PF08449_consen 9 FGGCCSYGILQEKIMTTPYGSPFPLFLTFVQFAFNALFSFILLSLFKFPKSRKIPLKKYAILSFLFFLASVLSNAALKYI 88 (303)
T ss_pred HHHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHHHHHHHHHHHHhccccCCCcChHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 33334455777777775444 48999999999999998887755443 55677889999999999999999999999999
Q ss_pred hhhHHHHHhHHHHHHHHHHHHHHhccccChhhhhHHhHhhhhheeeeecCcc----ch------HHHHHHHHHHHHHHHH
Q 042552 97 SVGFYQMTKLAIIPFTVLLETLFLKKQFSQKIKFSLFLLLVGVGIASVTDLQ----LN------MVGTILSLLAIVTTCV 166 (179)
Q Consensus 97 sv~~~~i~k~~~~~~~~~~~~~~~~~~~s~~~~~sl~li~~Gv~~~~~~d~~----~~------~~G~~~~l~s~~~~a~ 166 (179)
|+|++++.|++.|+.+++++++++|||++.+++++++++++|++++..+|.+ .+ ..|+.+.+++.+++|+
T Consensus 89 ~~p~~~~~ks~~~i~vmi~~~l~~~k~y~~~~~~~v~li~~Gv~~~~~~~~~~~~~~~~~~~~~~~G~~ll~~sl~~~a~ 168 (303)
T PF08449_consen 89 SYPTQIVFKSSKPIPVMILGVLILGKRYSRRQYLSVLLITIGVAIFTLSDSSSSSSSNSSSFSSALGIILLLLSLLLDAF 168 (303)
T ss_pred ChHHHHHHhhhHHHHHHHHHHHhcCccccHHHHHHHHHHHhhHheeeecccccccccccccccchhHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999887642 11 2399999999999999
Q ss_pred HHHHHcc
Q 042552 167 GQIVSFF 173 (179)
Q Consensus 167 ~~i~~~~ 173 (179)
+.++.||
T Consensus 169 ~~~~qe~ 175 (303)
T PF08449_consen 169 TGVYQEK 175 (303)
T ss_pred HHHHHHH
Confidence 9988754
No 9
>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=99.58 E-value=9.8e-15 Score=116.28 Aligned_cols=150 Identities=17% Similarity=0.156 Sum_probs=130.2
Q ss_pred HHHHHHHHHHhhccCCCc-hHHHHHHHHHHHHHHHHHHHHHcCCCccCccchhHHHHHHHHHHHHhhhcccccccchhhH
Q 042552 22 SVSIVICNKALMSNLGFP-FATTLTSWHLMVTFCTLHAAQRLNFFESKAVDVKTVMLFGILNGISIGLLNLSLGFNSVGF 100 (179)
Q Consensus 22 S~~~~~~NK~ll~~~~f~-~p~~lt~~q~~~~~~~~~i~~~~~~~~~~~~~~~~~lp~~l~~~~~~~~~n~sl~~~sv~~ 100 (179)
=+.--...+++++..+|+ |.+.+|+.|+++-....++.+..-.-+++..|||....++.+..+++.++|.|+.|.+.|.
T Consensus 55 Yl~yGy~qElif~~~gfkp~GWylTlvQf~~Ysg~glie~~~~~~k~r~iP~rtY~~la~~t~gtmGLsn~SlgYLNYPt 134 (367)
T KOG1582|consen 55 YLVYGYLQELIFNVEGFKPFGWYLTLVQFLVYSGFGLIELQLIQTKRRVIPWRTYVILAFLTVGTMGLSNGSLGYLNYPT 134 (367)
T ss_pred HHHHHHHHHHHhccccCcccchHHHHHHHHHHHhhhheEEEeecccceecchhHhhhhHhhhhhccccCcCccccccCcH
Confidence 344456889999999996 9999999999998777766543323345567899999999999999999999999999999
Q ss_pred HHHHhHHHHHHHHHHHHHHhccccChhhhhHHhHhhhhheeeeecCc----cchHHHHHHHHHHHHHHHHHHHHH
Q 042552 101 YQMTKLAIIPFTVLLETLFLKKQFSQKIKFSLFLLLVGVGIASVTDL----QLNMVGTILSLLAIVTTCVGQIVS 171 (179)
Q Consensus 101 ~~i~k~~~~~~~~~~~~~~~~~~~s~~~~~sl~li~~Gv~~~~~~d~----~~~~~G~~~~l~s~~~~a~~~i~~ 171 (179)
+.++|++..+.+++.+.++-|+|+++..+.+..++++|.+.++..|. +||..|+.+...+.+++|+-.-.-
T Consensus 135 QviFKccKliPVmiggifIqGkRY~v~d~~aA~lm~lGli~FTLADs~~sPNF~~~Gv~mIsgALl~DA~iGNvQ 209 (367)
T KOG1582|consen 135 QVIFKCCKLIPVMIGGIFIQGKRYGVHDYIAAMLMSLGLIWFTLADSQTSPNFNLIGVMMISGALLADAVIGNVQ 209 (367)
T ss_pred HHHHHhhhhhhhhheeeeeccccccHHHHHHHHHHHHHHHhhhhcccccCCCcceeeHHHHHHHHHHHHHhhHHH
Confidence 99999998888888999999999999999999999999999988875 689999999999999999854443
No 10
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=99.42 E-value=9.7e-12 Score=100.51 Aligned_cols=147 Identities=16% Similarity=0.103 Sum_probs=123.0
Q ss_pred HHHHHHHhhc------cCCCchHHHHHHHHHHHHHHHHHHHHH-cCCCccCccchhHHHHHHHHHHHHhhhcccccccch
Q 042552 25 IVICNKALMS------NLGFPFATTLTSWHLMVTFCTLHAAQR-LNFFESKAVDVKTVMLFGILNGISIGLLNLSLGFNS 97 (179)
Q Consensus 25 ~~~~NK~ll~------~~~f~~p~~lt~~q~~~~~~~~~i~~~-~~~~~~~~~~~~~~lp~~l~~~~~~~~~n~sl~~~s 97 (179)
.-.+++.+.+ ..+|+.|.++.++|-+.+.+..+.... .+.....+.++++..-.++....+..++..||+|+|
T Consensus 29 ~gVlQEki~T~~y~~~~~rF~~~~fL~~~q~l~~~~~s~~~l~~~k~~~~~~apl~~y~~is~tn~~s~~~~yeaLKyvS 108 (327)
T KOG1581|consen 29 WGVLQEKIMTRPYGEDGERFEHSLFLVFCQRLVALLVSYAMLKWWKKELSGVAPLYKYSLISFTNTLSSWCGYEALKYVS 108 (327)
T ss_pred HHHHhcceeecccCcccccccccHHHHHHHHHHHHHHHHHHHhcccccCCCCCchhHHhHHHHHhhcchHHHHHHHHhcc
Confidence 3345555544 247888999999999999998877633 333234556788999999999999999999999999
Q ss_pred hhHHHHHhHHHHHHHHHHHHHHhccccChhhhhHHhHhhhhheeeeecCc---------cchHHHHHHHHHHHHHHHHHH
Q 042552 98 VGFYQMTKLAIIPFTVLLETLFLKKQFSQKIKFSLFLLLVGVGIASVTDL---------QLNMVGTILSLLAIVTTCVGQ 168 (179)
Q Consensus 98 v~~~~i~k~~~~~~~~~~~~~~~~~~~s~~~~~sl~li~~Gv~~~~~~d~---------~~~~~G~~~~l~s~~~~a~~~ 168 (179)
.|.+.+.|++..+.+++.+.+++|+|++..++++..++.+|+.++..++. +.++.|+.++..+.+++++.+
T Consensus 109 yPtq~LaKscKmIPVmlmg~Lvy~~ky~~~eYl~~~LIs~GvsiF~l~~~s~s~~~~g~~ns~~G~~Ll~~~L~fDgfTn 188 (327)
T KOG1581|consen 109 YPTQTLAKSCKMIPVMLMGTLVYGRKYSSFEYLVAFLISLGVSIFSLFPNSDSSSKSGRENSPIGILLLFGYLLFDGFTN 188 (327)
T ss_pred chHHHHHHHhhhhHHHHHHHHHhcCccCcHHHHHHHHHHhheeeEEEecCCCCccccCCCCchHhHHHHHHHHHHHhhHH
Confidence 99999999999999999999999999999999999999999999877532 367899999999999998865
Q ss_pred HHH
Q 042552 169 IVS 171 (179)
Q Consensus 169 i~~ 171 (179)
-+-
T Consensus 189 ~tQ 191 (327)
T KOG1581|consen 189 ATQ 191 (327)
T ss_pred hHH
Confidence 543
No 11
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=99.29 E-value=1.9e-10 Score=95.74 Aligned_cols=149 Identities=19% Similarity=0.269 Sum_probs=116.5
Q ss_pred HHHHHHHHhhccCCCchHHHHHHHHHHHHHHHHHH--HHHcC---CCccCccchhHHHHHHHHHHHHhhhcccccccchh
Q 042552 24 SIVICNKALMSNLGFPFATTLTSWHLMVTFCTLHA--AQRLN---FFESKAVDVKTVMLFGILNGISIGLLNLSLGFNSV 98 (179)
Q Consensus 24 ~~~~~NK~ll~~~~f~~p~~lt~~q~~~~~~~~~i--~~~~~---~~~~~~~~~~~~lp~~l~~~~~~~~~n~sl~~~sv 98 (179)
+....+..+-++ |++.|.+-++..+..-.++... ..+.+ ..+..+.++++.+.++++-...-.+.+.|++|.|+
T Consensus 27 ~t~~~s~~l~~~-~~~~P~~Qs~~~Y~~l~~vy~~~~~~r~~~~~~~~~~~~~~w~y~lla~~Dv~aN~~~v~a~~yTsv 105 (334)
T PF06027_consen 27 GTGTFSSLLANK-GVNIPTFQSFFNYVLLALVYTPILLYRRGFKKWLKVLKRPWWKYFLLALLDVEANYLVVLAYQYTSV 105 (334)
T ss_pred hHHHHHHHHHhc-CccCcHHHHHHHHHHHHHHHhhhhhhccccccchhhcchhHHHHHHHHHHHHHHHHHHHHHhhcccH
Confidence 334455565554 7888888887777655443322 11111 12223456777888899888888899999999999
Q ss_pred hHHHHHhHHHHHHHHHHHHHHhccccChhhhhHHhHhhhhheeeeecCcc---------chHHHHHHHHHHHHHHHHHHH
Q 042552 99 GFYQMTKLAIIPFTVLLETLFLKKQFSQKIKFSLFLLLVGVGIASVTDLQ---------LNMVGTILSLLAIVTTCVGQI 169 (179)
Q Consensus 99 ~~~~i~k~~~~~~~~~~~~~~~~~~~s~~~~~sl~li~~Gv~~~~~~d~~---------~~~~G~~~~l~s~~~~a~~~i 169 (179)
+..|++++.+.|++++++++++|+|+++.+++++++.++|+.+....|.. -...|=++++.+.+++|++++
T Consensus 106 tS~~lL~~~~i~~~~~LS~~fL~~ry~~~~~~gv~i~i~Gv~lv~~sD~~~~~~~~~~~~~i~GDll~l~~a~lya~~nV 185 (334)
T PF06027_consen 106 TSVQLLDCTSIPFVMILSFIFLKRRYSWFHILGVLICIAGVVLVVVSDVLSGSDSSSGSNPILGDLLALLGAILYAVSNV 185 (334)
T ss_pred hHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhheeeecccccccCCCCCccchhHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999887776532 247899999999999999999
Q ss_pred HHcc
Q 042552 170 VSFF 173 (179)
Q Consensus 170 ~~~~ 173 (179)
+.|+
T Consensus 186 ~~E~ 189 (334)
T PF06027_consen 186 LEEK 189 (334)
T ss_pred HHHH
Confidence 8753
No 12
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=99.23 E-value=1.4e-11 Score=96.64 Aligned_cols=131 Identities=15% Similarity=0.109 Sum_probs=111.4
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHH-cCCCccCccchhHHHHHHHHHHHHhhhcccccccchhhHHHHHhHHHHHHHHH
Q 042552 36 LGFPFATTLTSWHLMVTFCTLHAAQR-LNFFESKAVDVKTVMLFGILNGISIGLLNLSLGFNSVGFYQMTKLAIIPFTVL 114 (179)
Q Consensus 36 ~~f~~p~~lt~~q~~~~~~~~~i~~~-~~~~~~~~~~~~~~lp~~l~~~~~~~~~n~sl~~~sv~~~~i~k~~~~~~~~~ 114 (179)
.+|.|...+.++|+.+..+..-+.-. ++..+.++.+.+.....++.+.+.++.+|.++||+|.|...+-|++.|+.+++
T Consensus 48 E~FTfalaLVf~qC~~N~vfAkvl~~ir~~~~~D~t~~~~YaAcs~sYLlAMVssN~Alq~vpYPTqVlgKScKPIPVMi 127 (337)
T KOG1580|consen 48 EKFTFALALVFFQCTANTVFAKVLFLIRKKTEIDNTPTKMYAACSASYLLAMVSSNQALQYVPYPTQVLGKSCKPIPVMI 127 (337)
T ss_pred heehHHHHHHHHHHHHHHHHHHhheeecccccccCCcchHHHHHHHHHHHHHHhccchhcccCCcHHHhcccCCCcceee
Confidence 35889999999999999998865432 33345566677888999999999999999999999999999999999999999
Q ss_pred HHHHHhccccChhhhhHHhHhhhhheeeeecCcc-------chHHHHHHHHHHHHHHHH
Q 042552 115 LETLFLKKQFSQKIKFSLFLLLVGVGIASVTDLQ-------LNMVGTILSLLAIVTTCV 166 (179)
Q Consensus 115 ~~~~~~~~~~s~~~~~sl~li~~Gv~~~~~~d~~-------~~~~G~~~~l~s~~~~a~ 166 (179)
++..+.+|++++++++++.++++|++++.+.|.+ ..-.|=.+.++|...+.+
T Consensus 128 lGVl~~~KsY~w~kY~cVL~IV~GValFmYK~~Kv~g~e~~t~g~GElLL~lSL~mDGl 186 (337)
T KOG1580|consen 128 LGVLFAHKSYHWRKYCCVLMIVVGVALFMYKENKVGGAEDKTFGFGELLLILSLAMDGL 186 (337)
T ss_pred eehhhhcccccHHHHHHHHHHHHHHHHhhccccccCCCcccccchHHHHHHHHHHhccc
Confidence 9999999999999999999999999999887543 235677888888777654
No 13
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=99.22 E-value=3.5e-10 Score=90.31 Aligned_cols=142 Identities=16% Similarity=0.155 Sum_probs=115.5
Q ss_pred HHHHHhhccCCCchHHHHHHHHHHHHHHHHHHHHHcCCCccCccchhHHHHHHH-HHHHHhhhcccccccchhhHHHHHh
Q 042552 27 ICNKALMSNLGFPFATTLTSWHLMVTFCTLHAAQRLNFFESKAVDVKTVMLFGI-LNGISIGLLNLSLGFNSVGFYQMTK 105 (179)
Q Consensus 27 ~~NK~ll~~~~f~~p~~lt~~q~~~~~~~~~i~~~~~~~~~~~~~~~~~lp~~l-~~~~~~~~~n~sl~~~sv~~~~i~k 105 (179)
...|+.+++ ..| |..+++.|++.+.+.+.+..+.+ +++.+++..+..+. .+.....+.+.|++|.|.+...++.
T Consensus 6 ~~~k~~~~~-~~~-~~~~~~~r~~~~~l~l~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~~~~~a~~~~~~~~~~ii~ 80 (260)
T TIGR00950 6 VVIGQYLEG-QVP-LYFAVFRRLIFALLLLLPLLRRR---PPLKRLLRLLLLGALQIGVFYVLYFVAVKRLPVGEAALLL 80 (260)
T ss_pred HHHHHHHhc-CCC-HHHHHHHHHHHHHHHHHHHHHhc---cCHhHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHH
Confidence 467888874 445 89999999999888776653333 23334555556654 5677888899999999999999999
Q ss_pred HHHHHHHHHHHHHHhccccChhhhhHHhHhhhhheeeeec-CccchHHHHHHHHHHHHHHHHHHHHHcc
Q 042552 106 LAIIPFTVLLETLFLKKQFSQKIKFSLFLLLVGVGIASVT-DLQLNMVGTILSLLAIVTTCVGQIVSFF 173 (179)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~s~~~~~sl~li~~Gv~~~~~~-d~~~~~~G~~~~l~s~~~~a~~~i~~~~ 173 (179)
+..|.++.+++.+++|||++++++.++.+..+|+.+...+ +.+.+..|..+++.+.++.+.+.++.|+
T Consensus 81 ~~~P~~~~~~~~l~~~e~~~~~~~~gi~i~~~Gv~li~~~~~~~~~~~G~~~~l~a~~~~a~~~~~~k~ 149 (260)
T TIGR00950 81 YLAPLYVTLLSDLMGKERPRKLVLLAAVLGLAGAVLLLSDGNLSINPAGLLLGLGSGISFALGTVLYKR 149 (260)
T ss_pred hhhHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHhhccCCcccccHHHHHHHHHHHHHHHHHHHHHhH
Confidence 9999999999999999999999999999999998775443 3456788999999999999999999865
No 14
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=99.19 E-value=2.9e-11 Score=96.67 Aligned_cols=149 Identities=15% Similarity=0.136 Sum_probs=115.1
Q ss_pred HHHHHHHHHHhhccCCCchHHHHHHHHHHHHHHHHHHH-HHcCCCccCccchhHHHHHHHHHHHHhhhcccccccc-hhh
Q 042552 22 SVSIVICNKALMSNLGFPFATTLTSWHLMVTFCTLHAA-QRLNFFESKAVDVKTVMLFGILNGISIGLLNLSLGFN-SVG 99 (179)
Q Consensus 22 S~~~~~~NK~ll~~~~f~~p~~lt~~q~~~~~~~~~i~-~~~~~~~~~~~~~~~~lp~~l~~~~~~~~~n~sl~~~-sv~ 99 (179)
..+-+..=+.+.++.. .....+|+.||++.++-..+. .+++..+ ++.+.|........|-..-+++|.+++++ |+|
T Consensus 15 Ccsnvv~lE~L~~~~p-gsgNLITFaqFlFia~eGlif~skf~~~k-~kiplk~Y~i~V~mFF~vnv~NN~al~f~I~~P 92 (330)
T KOG1583|consen 15 CCSNVVFLELLVRNEP-GSGNLITFAQFLFIATEGLIFTSKFFTVK-PKIPLKDYAITVAMFFIVNVTNNYALKFNIPMP 92 (330)
T ss_pred hhchHHHHHHHHHhCC-CCeeehHHHHHHHHHHhceeeeccccccC-CCCchhhhheehheeeeeeeeccceeeecccce
Confidence 3334455567776432 246899999999988876665 4455544 78888887766655555556999999987 999
Q ss_pred HHHHHhHHHHHHHHHHHHHHhccccChhhhhHHhHhhhhheeeeec---Ccc--------------ch--HHHHHHHHHH
Q 042552 100 FYQMTKLAIIPFTVLLETLFLKKQFSQKIKFSLFLLLVGVGIASVT---DLQ--------------LN--MVGTILSLLA 160 (179)
Q Consensus 100 ~~~i~k~~~~~~~~~~~~~~~~~~~s~~~~~sl~li~~Gv~~~~~~---d~~--------------~~--~~G~~~~l~s 160 (179)
.|.++|+.++..+++.++++.|||+|.+++.|+.++++|+++++.. |.+ +. ..|+.+..++
T Consensus 93 lHiIfRsgsll~nM~~g~il~~k~Ys~~Qy~Sv~~iTiGiiIcTl~s~~d~~~~~~~l~~~~~~~~~~~w~iGi~lL~~a 172 (330)
T KOG1583|consen 93 LHIIFRSGSLLANMILGWILLGKRYSLRQYSSVLMITIGIIICTLFSSKDGRSKLSGLDSGSAQSDFFWWLIGIALLVFA 172 (330)
T ss_pred EEEEEecCcHHHHHHHHHHhccceeehhhhhhHHhhhhhheeEEeecCcchhhhhcccccCcccccchHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999998763 211 11 3688888999
Q ss_pred HHHHHHHHHHHc
Q 042552 161 IVTTCVGQIVSF 172 (179)
Q Consensus 161 ~~~~a~~~i~~~ 172 (179)
.+.+|...++.|
T Consensus 173 l~~sa~mgiyqE 184 (330)
T KOG1583|consen 173 LLLSAYMGIYQE 184 (330)
T ss_pred HHHHHHHHHHHH
Confidence 999987666554
No 15
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=99.17 E-value=2.2e-09 Score=88.08 Aligned_cols=157 Identities=17% Similarity=0.161 Sum_probs=114.3
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHHHHHHHHHHHHHHHcCCCccCccchhHHHHHHHHH-H
Q 042552 5 SSFQLGVIGALFLSVASSVSIVICNKALMSNLGFPFATTLTSWHLMVTFCTLHAAQRLNFFESKAVDVKTVMLFGILN-G 83 (179)
Q Consensus 5 ~~~~~~~~~~~~~~~~~S~~~~~~NK~ll~~~~f~~p~~lt~~q~~~~~~~~~i~~~~~~~~~~~~~~~~~lp~~l~~-~ 83 (179)
|++....+.....|-.....+ |..++ +++ |..+.++|+.++.+.+....+. ++.+++..+..++.. .
T Consensus 3 ~~~~l~~l~~~~~Wg~~~~~~----k~~~~--~~~-p~~~~~~R~~~a~~~l~~~~~~-----~~~~~~~~~~~g~~~~~ 70 (299)
T PRK11453 3 RKDGVLALLVVVVWGLNFVVI----KVGLH--NMP-PLMLAGLRFMLVAFPAIFFVAR-----PKVPLNLLLGYGLTISF 70 (299)
T ss_pred HHHHHHHHHHHHHHhhhHHHH----HHHHh--cCC-HHHHHHHHHHHHHHHHHHHhcC-----CCCchHHHHHHHHHHHH
Confidence 344555555666665554433 77775 466 9999999999876654443211 223445555555543 2
Q ss_pred HHhhhccccccc-chhhHHHHHhHHHHHHHHHHHHHHhccccChhhhhHHhHhhhhheeeeecC---ccchHHHHHHHHH
Q 042552 84 ISIGLLNLSLGF-NSVGFYQMTKLAIIPFTVLLETLFLKKQFSQKIKFSLFLLLVGVGIASVTD---LQLNMVGTILSLL 159 (179)
Q Consensus 84 ~~~~~~n~sl~~-~sv~~~~i~k~~~~~~~~~~~~~~~~~~~s~~~~~sl~li~~Gv~~~~~~d---~~~~~~G~~~~l~ 159 (179)
....+...+++| .|.+...++-.+.|+++.+++++++|||++.+++.++++..+|+.+...++ .+.+..|..+++.
T Consensus 71 ~~~~~~~~~~~~~~~a~~a~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~l~~~Gv~ll~~~~~~~~~~~~~G~~l~l~ 150 (299)
T PRK11453 71 GQFAFLFCAINFGMPAGLASLVLQAQAFFTIVLGAFTFGERLQGKQLAGIALAIFGVLVLIEDSLNGQHVAMLGFMLTLA 150 (299)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhHHHhccccCCCcchhHHHHHHHHH
Confidence 333455667777 688888988888888999999999999999999999999999988765432 2346689999999
Q ss_pred HHHHHHHHHHHHcc
Q 042552 160 AIVTTCVGQIVSFF 173 (179)
Q Consensus 160 s~~~~a~~~i~~~~ 173 (179)
+.++.|.|.++.|+
T Consensus 151 aal~~a~~~v~~~~ 164 (299)
T PRK11453 151 AAFSWACGNIFNKK 164 (299)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999998865
No 16
>PRK11689 aromatic amino acid exporter; Provisional
Probab=99.15 E-value=4.4e-09 Score=86.20 Aligned_cols=154 Identities=17% Similarity=0.041 Sum_probs=111.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHHHHHHHHHHHHHHHcCCCccCccchhHHHHHHHHHHHHhhhcc
Q 042552 11 VIGALFLSVASSVSIVICNKALMSNLGFPFATTLTSWHLMVTFCTLHAAQRLNFFESKAVDVKTVMLFGILNGISIGLLN 90 (179)
Q Consensus 11 ~~~~~~~~~~~S~~~~~~NK~ll~~~~f~~p~~lt~~q~~~~~~~~~i~~~~~~~~~~~~~~~~~lp~~l~~~~~~~~~n 90 (179)
.+..+..|-.. ....|...+ ++| |..+.+.++..+.+......+.+ +.++.+++..+..++.+.....+.+
T Consensus 9 ~l~a~~~Wg~~----~~~~k~~~~--~~~-P~~~~~~R~~~a~l~l~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~ 79 (295)
T PRK11689 9 GLIAILLWSTM----VGLIRGVSE--SLG-PVGGAAMIYSVSGLLLLLTVGFP--RLRQFPKRYLLAGGLLFVSYEICLA 79 (295)
T ss_pred HHHHHHHHHHH----HHHHHHHHc--cCC-hHHHHHHHHHHHHHHHHHHcccc--ccccccHHHHHHHhHHHHHHHHHHH
Confidence 34445555433 456788886 467 99999999999988776553211 1223334444444555556666666
Q ss_pred ccccc----chhhHHHHHhHHHHHHHHHHHHHHhccccChhhhhHHhHhhhhheeeeecCcc-----------chHHHHH
Q 042552 91 LSLGF----NSVGFYQMTKLAIIPFTVLLETLFLKKQFSQKIKFSLFLLLVGVGIASVTDLQ-----------LNMVGTI 155 (179)
Q Consensus 91 ~sl~~----~sv~~~~i~k~~~~~~~~~~~~~~~~~~~s~~~~~sl~li~~Gv~~~~~~d~~-----------~~~~G~~ 155 (179)
.+++| .+.....++-.+.|+++.+++.+++|||++++++.++++...|+.+...+|.+ .+..|..
T Consensus 80 ~a~~~~~~~~~a~~a~~l~~~~Pi~~~ll~~~~~~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~G~~ 159 (295)
T PRK11689 80 LSLGYANTRRQAIEVGMVNYLWPSLTILFAVLFNGQKANWLLIPGLLLALAGVAWVLGGDNGLSLAELINNIASNPLSYG 159 (295)
T ss_pred HHHHHhhccccchHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHHHHhHhheecCCccchhhhhhhccccChHHHH
Confidence 66654 45555677888889999999999999999999999999999999876554321 2356999
Q ss_pred HHHHHHHHHHHHHHHHcc
Q 042552 156 LSLLAIVTTCVGQIVSFF 173 (179)
Q Consensus 156 ~~l~s~~~~a~~~i~~~~ 173 (179)
+++.+.++.|.|.++.|+
T Consensus 160 ~~l~aa~~~A~~~v~~k~ 177 (295)
T PRK11689 160 LAFIGAFIWAAYCNVTRK 177 (295)
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 999999999999999976
No 17
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=99.13 E-value=5.2e-09 Score=85.60 Aligned_cols=143 Identities=15% Similarity=0.147 Sum_probs=109.9
Q ss_pred HHHHHhhccCCCchHHHHHHHHHHHHHHHHHHH-HHcCCCccCccchhHHHHHHHHH-HHHhhhccccc-ccchhhHHHH
Q 042552 27 ICNKALMSNLGFPFATTLTSWHLMVTFCTLHAA-QRLNFFESKAVDVKTVMLFGILN-GISIGLLNLSL-GFNSVGFYQM 103 (179)
Q Consensus 27 ~~NK~ll~~~~f~~p~~lt~~q~~~~~~~~~i~-~~~~~~~~~~~~~~~~lp~~l~~-~~~~~~~n~sl-~~~sv~~~~i 103 (179)
..-|...+ +.+ |..+++.|+.++.+.+.+. +..+...+++.++++....+.+. .....+-+.+. ++.|.+...+
T Consensus 25 ~~~K~~~~--~~~-p~~~~~~R~~~a~l~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~a~~a~~ 101 (292)
T PRK11272 25 LVIRIGVE--SWP-PLMMAGVRFLIAGILLLAFLLLRGHPLPTLRQWLNAALIGLLLLAVGNGMVTVAEHQNVPSGIAAV 101 (292)
T ss_pred HHHHHHhc--cCC-HHHHHHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHH
Confidence 55687776 456 9999999999998876554 33222122333455666666653 45556667777 8999999999
Q ss_pred HhHHHHHHHHHHHHHHhccccChhhhhHHhHhhhhheeeeec-CccchHHHHHHHHHHHHHHHHHHHHHcc
Q 042552 104 TKLAIIPFTVLLETLFLKKQFSQKIKFSLFLLLVGVGIASVT-DLQLNMVGTILSLLAIVTTCVGQIVSFF 173 (179)
Q Consensus 104 ~k~~~~~~~~~~~~~~~~~~~s~~~~~sl~li~~Gv~~~~~~-d~~~~~~G~~~~l~s~~~~a~~~i~~~~ 173 (179)
+-.+.|.++.+++.+ +|||++++++.++++..+|+.+...+ +.+.+..|..+++++.++.|.+.++.|+
T Consensus 102 l~~~~Pl~~~lla~~-~~e~~~~~~~~~~~la~~Gv~ll~~~~~~~~~~~G~l~~l~a~~~~a~~~~~~~~ 171 (292)
T PRK11272 102 VVATVPLFTLCFSRL-FGIRTRKLEWLGIAIGLAGIVLLNSGGNLSGNPWGAILILIASASWAFGSVWSSR 171 (292)
T ss_pred HHHHHHHHHHHHHHH-hcccCchhHHHHHHHHHHhHHHHhcCcccccchHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999988875 69999999999999999998776533 3456678999999999999999998865
No 18
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=99.11 E-value=3.9e-09 Score=86.58 Aligned_cols=159 Identities=14% Similarity=0.085 Sum_probs=110.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHHHHHHHHHHHHH-HHcCCCcc---CccchhHH---HHHH
Q 042552 7 FQLGVIGALFLSVASSVSIVICNKALMSNLGFPFATTLTSWHLMVTFCTLHAA-QRLNFFES---KAVDVKTV---MLFG 79 (179)
Q Consensus 7 ~~~~~~~~~~~~~~~S~~~~~~NK~ll~~~~f~~p~~lt~~q~~~~~~~~~i~-~~~~~~~~---~~~~~~~~---lp~~ 79 (179)
+....+.........+..-.+. |.+ . +.| |..+.+.|+.++.+.+... ...+..+. +..++++. ..-+
T Consensus 6 ~~~g~~~~l~a~~~wg~~~~~~-k~~-~--~~~-~~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (296)
T PRK15430 6 TRQGVLLALAAYFIWGIAPAYF-KLI-Y--YVP-ADEILTHRVIWSFFFMVVLMSICRQWSYLKTLIQTPQKIFMLAVSA 80 (296)
T ss_pred hhhHHHHHHHHHHHHHHHHHHH-HHh-c--CCC-HHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHcCHHHHHHHHHHH
Confidence 3333444444444444444444 875 3 466 9999999999988654432 21111111 11123332 2233
Q ss_pred HHHHHHhhhcccccccchhhHHHHHhHHHHHHHHHHHHHHhccccChhhhhHHhHhhhhheeeeecCccchHHHHHHHHH
Q 042552 80 ILNGISIGLLNLSLGFNSVGFYQMTKLAIIPFTVLLETLFLKKQFSQKIKFSLFLLLVGVGIASVTDLQLNMVGTILSLL 159 (179)
Q Consensus 80 l~~~~~~~~~n~sl~~~sv~~~~i~k~~~~~~~~~~~~~~~~~~~s~~~~~sl~li~~Gv~~~~~~d~~~~~~G~~~~l~ 159 (179)
+....+..+.+.++++.|++...++..+.|+++++++++++|||++++++.++.+...|+.+....+.+.+ .+.+.
T Consensus 81 ~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li~~~~~~~~----~~~l~ 156 (296)
T PRK15430 81 VLIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQLWTFGSLP----IIALG 156 (296)
T ss_pred HHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHcCCcc----HHHHH
Confidence 55667888999999999999999999999999999999999999999999999999999987543222222 45777
Q ss_pred HHHHHHHHHHHHccc
Q 042552 160 AIVTTCVGQIVSFFK 174 (179)
Q Consensus 160 s~~~~a~~~i~~~~k 174 (179)
+.++.|+|.++.|+.
T Consensus 157 aa~~~a~~~i~~r~~ 171 (296)
T PRK15430 157 LAFSFAFYGLVRKKI 171 (296)
T ss_pred HHHHHHHHHHHHHhc
Confidence 889999999887664
No 19
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=99.06 E-value=7.5e-09 Score=87.24 Aligned_cols=167 Identities=14% Similarity=0.140 Sum_probs=122.9
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHHHHHHHHHHHHH-H-HcCCCccCccchhH---HHHHH
Q 042552 5 SSFQLGVIGALFLSVASSVSIVICNKALMSNLGFPFATTLTSWHLMVTFCTLHAA-Q-RLNFFESKAVDVKT---VMLFG 79 (179)
Q Consensus 5 ~~~~~~~~~~~~~~~~~S~~~~~~NK~ll~~~~f~~p~~lt~~q~~~~~~~~~i~-~-~~~~~~~~~~~~~~---~lp~~ 79 (179)
|+...+...+...==++..++..+-|..++ .|.+ |..+.++|+.++.+.+... . +.+..++++.++++ ....+
T Consensus 8 ~~~~~~~~~~~~~~q~~~~~~~~~~k~a~~-~G~~-~~~~~~~R~~iA~l~Ll~~~~~~~~~~~~~~~~~~~~~~l~l~g 85 (358)
T PLN00411 8 WRREAVFLTAMLATETSVVGISTLFKVATS-KGLN-IYPFLGYSYLLASLLLLPSLFFTNRSRSLPPLSVSILSKIGLLG 85 (358)
T ss_pred hhhccchHHHHHHHHHHHHHHHHHHHHHHH-CCCC-ccHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHH
Confidence 444455555555555677888889999996 5777 8889999999998776543 2 21212223334444 44455
Q ss_pred HHHHHHhhhcccccccchhhHHHHHhHHHHHHHHHHHHHH------hccccChhhhhHHhHhhhhheeeee-cCc-----
Q 042552 80 ILNGISIGLLNLSLGFNSVGFYQMTKLAIIPFTVLLETLF------LKKQFSQKIKFSLFLLLVGVGIASV-TDL----- 147 (179)
Q Consensus 80 l~~~~~~~~~n~sl~~~sv~~~~i~k~~~~~~~~~~~~~~------~~~~~s~~~~~sl~li~~Gv~~~~~-~d~----- 147 (179)
++......+.+.+++|.|.+...++-+++|.++++++.++ +|||.+++++.++++...|+.+... ++.
T Consensus 86 ~~g~~~~~~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~~~g~~~~~~ 165 (358)
T PLN00411 86 FLGSMYVITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVIFYHGPRVFVA 165 (358)
T ss_pred HHHHHHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHHHccCcccccc
Confidence 5443344578999999999999999999999999999988 6999999999999999999876432 111
Q ss_pred ------------------cch-HHHHHHHHHHHHHHHHHHHHHcc
Q 042552 148 ------------------QLN-MVGTILSLLAIVTTCVGQIVSFF 173 (179)
Q Consensus 148 ------------------~~~-~~G~~~~l~s~~~~a~~~i~~~~ 173 (179)
+-+ ..|..+++.+.++.|+|.+..++
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~lG~~l~l~aa~~wa~~~il~~~ 210 (358)
T PLN00411 166 SSPPYLNFRQLSPPLSSSNSDWLIGGALLTIQGIFVSVSFILQAH 210 (358)
T ss_pred cccccccccccccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 112 45999999999999999887754
No 20
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=98.97 E-value=4.2e-08 Score=80.32 Aligned_cols=141 Identities=15% Similarity=0.054 Sum_probs=102.4
Q ss_pred HHHHHHHHhhccCCCchHHHHHHHHHHHHHHHHHHHHHcCCCccCccchhHHHHHHHHHHHHhhhcccccccchhhHHHH
Q 042552 24 SIVICNKALMSNLGFPFATTLTSWHLMVTFCTLHAAQRLNFFESKAVDVKTVMLFGILNGISIGLLNLSLGFNSVGFYQM 103 (179)
Q Consensus 24 ~~~~~NK~ll~~~~f~~p~~lt~~q~~~~~~~~~i~~~~~~~~~~~~~~~~~lp~~l~~~~~~~~~n~sl~~~sv~~~~i 103 (179)
+.....|++++ .+| |..+.+.|++++.+.+.+..+.+..+.++.+++..+..+++......+...+++|.|.+...+
T Consensus 26 ~~~~~~K~~~~--~~~-~~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~a~~ 102 (293)
T PRK10532 26 SGASLAKSLFP--LVG-APGVTALRLALGTLILIAIFKPWRLRFAKEQRLPLLFYGVSLGGMNYLFYLSIQTVPLGIAVA 102 (293)
T ss_pred hhHHHHHHHHH--HcC-HHHHHHHHHHHHHHHHHHHHhHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 33447899997 366 899999999999887766532222223344566677778777777788889999999999999
Q ss_pred HhHHHHHHHHHHHHHHhccccChhhhhHHhHhhhhheeeee---cCccchHHHHHHHHHHHHHHHHHHHHHcc
Q 042552 104 TKLAIIPFTVLLETLFLKKQFSQKIKFSLFLLLVGVGIASV---TDLQLNMVGTILSLLAIVTTCVGQIVSFF 173 (179)
Q Consensus 104 ~k~~~~~~~~~~~~~~~~~~~s~~~~~sl~li~~Gv~~~~~---~d~~~~~~G~~~~l~s~~~~a~~~i~~~~ 173 (179)
+..+.|.++.+++ +|+++... .+.+...|+.+... ++.+.+..|..+++.+.++.|.|.+..|+
T Consensus 103 l~~t~Pi~~~ll~----~~~~~~~~--~~~i~~~Gv~li~~~~~~~~~~~~~G~ll~l~aa~~~a~~~v~~r~ 169 (293)
T PRK10532 103 LEFTGPLAVALFS----SRRPVDFV--WVVLAVLGLWFLLPLGQDVSHVDLTGAALALGAGACWAIYILSGQR 169 (293)
T ss_pred HHHHHHHHHHHHh----cCChHHHH--HHHHHHHHHheeeecCCCcccCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 9987777776655 35555444 34556778766432 12345678999999999999999998865
No 21
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=98.96 E-value=3.7e-08 Score=78.91 Aligned_cols=139 Identities=18% Similarity=0.172 Sum_probs=101.7
Q ss_pred HHHHHhhccCCCchHHHHHHHHHHHHHHHHHHH-HHcCCC-----ccCccchh----HHHHHHHHHHHHhhhcccccccc
Q 042552 27 ICNKALMSNLGFPFATTLTSWHLMVTFCTLHAA-QRLNFF-----ESKAVDVK----TVMLFGILNGISIGLLNLSLGFN 96 (179)
Q Consensus 27 ~~NK~ll~~~~f~~p~~lt~~q~~~~~~~~~i~-~~~~~~-----~~~~~~~~----~~lp~~l~~~~~~~~~n~sl~~~ 96 (179)
..-|++ . +.+ |..+.+.|++++.+.+.+. ...+.. +.++.+.+ .....+++...+..+-..++++.
T Consensus 19 ~~~k~~-~--~~~-~~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a~~~~ 94 (256)
T TIGR00688 19 YYSKLL-K--PLP-ATDILGHRMIWSFPFMLLSVTLFRQWAALIERLKRIQKRPLILSLLLCGLLIGFNWWLFIWAVNNG 94 (256)
T ss_pred HHHHHh-c--cCC-HHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 345763 3 366 9999999999988765442 111111 00111111 23445666777888999999999
Q ss_pred hhhHHHHHhHHHHHHHHHHHHHHhccccChhhhhHHhHhhhhheeeeecCccchHHHHHHHHHHHHHHHHHHHHHcc
Q 042552 97 SVGFYQMTKLAIIPFTVLLETLFLKKQFSQKIKFSLFLLLVGVGIASVTDLQLNMVGTILSLLAIVTTCVGQIVSFF 173 (179)
Q Consensus 97 sv~~~~i~k~~~~~~~~~~~~~~~~~~~s~~~~~sl~li~~Gv~~~~~~d~~~~~~G~~~~l~s~~~~a~~~i~~~~ 173 (179)
|++..+++-.++|.++++++.+++|||+++++++++++..+|+++...++.+.+ .+++.+.++.|.|.+..|+
T Consensus 95 ~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li~~~~~~~~----~~~l~aa~~~a~~~i~~~~ 167 (256)
T TIGR00688 95 SSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVISNIVLKGSLP----WEALVLAFSFTAYGLIRKA 167 (256)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHcCCch----HHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999876543322222 3567889999999988755
No 22
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=98.96 E-value=4.8e-09 Score=84.03 Aligned_cols=100 Identities=23% Similarity=0.320 Sum_probs=86.6
Q ss_pred HHHHHHHHHHHHhhhcccccccchhhHHHHHhHHHHHHHHHHHHHHhccccChhhhhHHhHhhhhheeeeecCcc-----
Q 042552 74 TVMLFGILNGISIGLLNLSLGFNSVGFYQMTKLAIIPFTVLLETLFLKKQFSQKIKFSLFLLLVGVGIASVTDLQ----- 148 (179)
Q Consensus 74 ~~lp~~l~~~~~~~~~n~sl~~~sv~~~~i~k~~~~~~~~~~~~~~~~~~~s~~~~~sl~li~~Gv~~~~~~d~~----- 148 (179)
+...-++++..+-.+...++++.+.+.||+++.+.+++++++.++++|||.+.++|.++.+++.|+++...++..
T Consensus 19 ~~~vPA~lY~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~~~~~~~~~ 98 (244)
T PF04142_consen 19 KLAVPALLYAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLSSSQSSDNS 98 (244)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecCCccccccc
Confidence 444456678888889999999999999999999999999999999999999999999999999999987553321
Q ss_pred ------------chHHHHHHHHHHHHHHHHHHHHHcc
Q 042552 149 ------------LNMVGTILSLLAIVTTCVGQIVSFF 173 (179)
Q Consensus 149 ------------~~~~G~~~~l~s~~~~a~~~i~~~~ 173 (179)
-...|+...+.+.++.++..+|.|+
T Consensus 99 ~~~~~~~~~~~~~~~~G~~~vl~~~~~S~~agVy~E~ 135 (244)
T PF04142_consen 99 SSSSVHHDASNQNPLLGLLAVLAAAFLSGFAGVYFEK 135 (244)
T ss_pred cccccccccccchhHhHHHHHHHHHHHHHHHHHHHHH
Confidence 1368999999999999999999865
No 23
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=98.89 E-value=1.3e-08 Score=71.86 Aligned_cols=114 Identities=17% Similarity=0.257 Sum_probs=90.2
Q ss_pred HHHHHHHhhccCCCchHHHHHHHHHHHHHHHHHHH---HHcCC-CccCccchhHHHHHHHH-HHHHhhhcccccccchhh
Q 042552 25 IVICNKALMSNLGFPFATTLTSWHLMVTFCTLHAA---QRLNF-FESKAVDVKTVMLFGIL-NGISIGLLNLSLGFNSVG 99 (179)
Q Consensus 25 ~~~~NK~ll~~~~f~~p~~lt~~q~~~~~~~~~i~---~~~~~-~~~~~~~~~~~lp~~l~-~~~~~~~~n~sl~~~sv~ 99 (179)
....+|...++ +| |...++.|+..+.+ ..+. ...+. .+.++.++......+++ ......+.+.++++.+.+
T Consensus 6 ~~~~~k~~~~~--~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 81 (126)
T PF00892_consen 6 YSVFSKKLLKK--IS-PLSITFWRFLIAGI-LLILLLILGRKPFKNLSPRQWLWLLFLGLLGTALAYLLYFYALKYISAS 81 (126)
T ss_pred HHHHHHHHhcc--CC-HHHHHHHHHHHHHH-HHHHHHhhccccccCCChhhhhhhhHhhccceehHHHHHHHHHHhcchh
Confidence 45778888874 66 89999999999986 3332 22221 22333344556666665 578889999999999999
Q ss_pred HHHHHhHHHHHHHHHHHHHHhccccChhhhhHHhHhhhhheee
Q 042552 100 FYQMTKLAIIPFTVLLETLFLKKQFSQKIKFSLFLLLVGVGIA 142 (179)
Q Consensus 100 ~~~i~k~~~~~~~~~~~~~~~~~~~s~~~~~sl~li~~Gv~~~ 142 (179)
..++.....|+++.+++++++||+++.+++.++++++.|+.+.
T Consensus 82 ~~~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~ 124 (126)
T PF00892_consen 82 IVSILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLI 124 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999998654
No 24
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=98.87 E-value=4.4e-07 Score=72.71 Aligned_cols=133 Identities=17% Similarity=0.119 Sum_probs=101.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCC--CccCccchh-HHHHHHHHHHHHhhhcccccccchhhHHHHHhHHHHHHHHHHHH
Q 042552 41 ATTLTSWHLMVTFCTLHAAQRLNF--FESKAVDVK-TVMLFGILNGISIGLLNLSLGFNSVGFYQMTKLAIIPFTVLLET 117 (179)
Q Consensus 41 p~~lt~~q~~~~~~~~~i~~~~~~--~~~~~~~~~-~~lp~~l~~~~~~~~~n~sl~~~sv~~~~i~k~~~~~~~~~~~~ 117 (179)
+......+.....+........+. ..+.+.+++ ..+..++.......+.+.++++.+.+..+.+.++.|.++.+++.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~ 115 (292)
T COG0697 36 FLFAAALRFLIAALLLLPLLLLEPRGLRPALRPWLLLLLLALLGLALPFLLLFLALKYTSASVASLIIGLLPLFTALLAV 115 (292)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhcccccccccchHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHH
Confidence 455556688877776443333222 112222223 34444556777888889999999999999999999999999996
Q ss_pred -HHhccccChhhhhHHhHhhhhheeeeecCccc---hHHHHHHHHHHHHHHHHHHHHHcc
Q 042552 118 -LFLKKQFSQKIKFSLFLLLVGVGIASVTDLQL---NMVGTILSLLAIVTTCVGQIVSFF 173 (179)
Q Consensus 118 -~~~~~~~s~~~~~sl~li~~Gv~~~~~~d~~~---~~~G~~~~l~s~~~~a~~~i~~~~ 173 (179)
+++|||++++++.++.....|+.+...++... +..|..+++.+.++.|++.+..++
T Consensus 116 ~~~~~e~~~~~~~~~~~~~~~Gv~lv~~~~~~~~~~~~~g~~~~l~a~~~~a~~~~~~~~ 175 (292)
T COG0697 116 LLLLGERLSLLQILGILLALAGVLLILLGGGGGGILSLLGLLLALAAALLWALYTALVKR 175 (292)
T ss_pred HHHccCCCcHHHHHHHHHHHHhHHheecCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67799999999999999999999988766644 368999999999999999988853
No 25
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=98.73 E-value=6.1e-07 Score=72.96 Aligned_cols=99 Identities=13% Similarity=0.096 Sum_probs=83.3
Q ss_pred HHHHHHHHHHHhhhcccccccchhhHHHHHhHHHHHHHHHHHHHHhccccChhhhhHHhHhhhhheeeeecC-ccchHHH
Q 042552 75 VMLFGILNGISIGLLNLSLGFNSVGFYQMTKLAIIPFTVLLETLFLKKQFSQKIKFSLFLLLVGVGIASVTD-LQLNMVG 153 (179)
Q Consensus 75 ~lp~~l~~~~~~~~~n~sl~~~sv~~~~i~k~~~~~~~~~~~~~~~~~~~s~~~~~sl~li~~Gv~~~~~~d-~~~~~~G 153 (179)
.+..++.......+.+.++++.|.+..+.+....|+++.+++.+++|||++.+++.++.+...|+.+...+| .+.+..|
T Consensus 66 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~~~~~~~~~~~g 145 (281)
T TIGR03340 66 LAISAVANMVYFLGLAQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPLAWLGILIITLGLLVLGLSRFAQHRRKA 145 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcccccccchhH
Confidence 333444566778888999999999999999999999999999999999999999999999999987754433 3356678
Q ss_pred HHHHHHHHHHHHHHHHHHcc
Q 042552 154 TILSLLAIVTTCVGQIVSFF 173 (179)
Q Consensus 154 ~~~~l~s~~~~a~~~i~~~~ 173 (179)
..+++.+.++.+.|.+..|+
T Consensus 146 ~~~~l~aal~~a~~~i~~k~ 165 (281)
T TIGR03340 146 YAWALAAALGTAIYSLSDKA 165 (281)
T ss_pred HHHHHHHHHHHHHhhhhccc
Confidence 88999999999999987654
No 26
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=98.69 E-value=9.6e-08 Score=79.57 Aligned_cols=102 Identities=21% Similarity=0.249 Sum_probs=89.8
Q ss_pred HHHHHHHHHHH----HhhhcccccccchhhHHHHHhHHHHHHHHHHHHHHhccccChhhhhHHhHhhhhheeeeecCc--
Q 042552 74 TVMLFGILNGI----SIGLLNLSLGFNSVGFYQMTKLAIIPFTVLLETLFLKKQFSQKIKFSLFLLLVGVGIASVTDL-- 147 (179)
Q Consensus 74 ~~lp~~l~~~~----~~~~~n~sl~~~sv~~~~i~k~~~~~~~~~~~~~~~~~~~s~~~~~sl~li~~Gv~~~~~~d~-- 147 (179)
+....++.||. .-.+.|.||+|.+++..+++-+++-.++..++.++.+||+|+.+.+++.+-+.|+++.+.+|.
T Consensus 157 ~~ak~sl~fc~lWF~anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~sKllav~~si~GViiVt~~~s~~ 236 (416)
T KOG2765|consen 157 QTAKLSLFFCPLWFLANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLSKLLAVFVSIAGVIIVTMGDSKQ 236 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHHHHHHHHHhhccEEEEEeccccc
Confidence 56666665543 456889999999999999999999999999999999999999999999999999999999854
Q ss_pred ------cchHHHHHHHHHHHHHHHHHHHHHcccc
Q 042552 148 ------QLNMVGTILSLLAIVTTCVGQIVSFFKW 175 (179)
Q Consensus 148 ------~~~~~G~~~~l~s~~~~a~~~i~~~~k~ 175 (179)
+-+..|-++++++.+.+|.|.++.|+|.
T Consensus 237 ~~~~~a~~~llG~llaL~sA~~YavY~vllk~~~ 270 (416)
T KOG2765|consen 237 NSDLPASRPLLGNLLALLSALLYAVYTVLLKRKI 270 (416)
T ss_pred cccCCccchhHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 2348999999999999999999998874
No 27
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=98.48 E-value=7e-07 Score=63.09 Aligned_cols=77 Identities=25% Similarity=0.333 Sum_probs=65.3
Q ss_pred chhHHHHHHHHHH-HHhhhcccccccchhhHHHHHhHHHHHHHHHHHHHHhccccChhhhhHHhHhhhhheeeeecCcc
Q 042552 71 DVKTVMLFGILNG-ISIGLLNLSLGFNSVGFYQMTKLAIIPFTVLLETLFLKKQFSQKIKFSLFLLLVGVGIASVTDLQ 148 (179)
Q Consensus 71 ~~~~~lp~~l~~~-~~~~~~n~sl~~~sv~~~~i~k~~~~~~~~~~~~~~~~~~~s~~~~~sl~li~~Gv~~~~~~d~~ 148 (179)
++...+..++... .+..+...|+++.| +....+.++.|+++++++.+++|||++++++.++.++.+|+++...+|.+
T Consensus 33 ~~~~~~~~g~~~~~~~~~~~~~a~~~~~-~~v~~i~~~~pi~~~ll~~~~~~er~~~~~~~a~~l~~~Gv~li~~~~~~ 110 (113)
T PF13536_consen 33 PWLWLILAGLLGFGVAYLLFFYALSYAP-ALVAAIFSLSPIFTALLSWLFFKERLSPRRWLAILLILIGVILIAWSDLT 110 (113)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhhhcc
Confidence 3444555566554 77889999999999 68889999999999999999999999999999999999999998777654
No 28
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=98.47 E-value=2.1e-06 Score=69.41 Aligned_cols=156 Identities=19% Similarity=0.238 Sum_probs=112.8
Q ss_pred HHHHHHHHHHHHhhc-----cCCCchHHHHHHHHHHHHHHHHHH---HHHc----CCCc-------cCccchh--HHHHH
Q 042552 20 ASSVSIVICNKALMS-----NLGFPFATTLTSWHLMVTFCTLHA---AQRL----NFFE-------SKAVDVK--TVMLF 78 (179)
Q Consensus 20 ~~S~~~~~~NK~ll~-----~~~f~~p~~lt~~q~~~~~~~~~i---~~~~----~~~~-------~~~~~~~--~~lp~ 78 (179)
++...=++.-||.-+ ..+|..|..-+..-|+--...+.+ .|+. |... .++-|.+ -.+|-
T Consensus 13 vsGs~Ntl~aKwadsi~~eg~pgfqhpvlqal~mFlGEflCl~vf~lir~~sn~~g~~s~~~~ilsq~~~pf~p~lfl~P 92 (372)
T KOG3912|consen 13 VSGSFNTLVAKWADSIQAEGSPGFQHPVLQALLMFLGEFLCLAVFKLIRLRSNGQGVSSDLDSILSQDSSPFNPVLFLPP 92 (372)
T ss_pred hhccHHHHHHHHHHhhhhhCCCccccHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccccccccccCCCCcceecCh
Confidence 334444567788765 356878887776655543222222 2221 1111 1111333 45777
Q ss_pred HHHHHHHhhhcccccccchhhHHHHHhHHHHHHHHHHHHHHhccccChhhhhHHhHhhhhheeeeecCc----------c
Q 042552 79 GILNGISIGLLNLSLGFNSVGFYQMTKLAIIPFTVLLETLFLKKQFSQKIKFSLFLLLVGVGIASVTDL----------Q 148 (179)
Q Consensus 79 ~l~~~~~~~~~n~sl~~~sv~~~~i~k~~~~~~~~~~~~~~~~~~~s~~~~~sl~li~~Gv~~~~~~d~----------~ 148 (179)
+++=.....+.+.+|.+.+-+-+||+|-...+++.+++..+++++.+.++|+++..+..|+++....|. +
T Consensus 93 al~Di~gsslm~vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~qWl~i~fv~lGlviVg~~d~~~~~~p~~d~s 172 (372)
T KOG3912|consen 93 ALCDIAGSSLMYVGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGRQWLGILFVSLGLVIVGSLDVHLVTDPYTDYS 172 (372)
T ss_pred HHHHHhhhHHHHHHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchhhHHHHHHHHhhhheeeeeecccccCCccccc
Confidence 888888888999999999999999999999999999999999999999999999999999988776653 2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHccccc
Q 042552 149 LNMVGTILSLLAIVTTCVGQIVSFFKWL 176 (179)
Q Consensus 149 ~~~~G~~~~l~s~~~~a~~~i~~~~k~~ 176 (179)
--..|-.+.+.+.+.-|. |...|+|.+
T Consensus 173 ~iitGdllIiiaqiivai-Q~v~Eek~l 199 (372)
T KOG3912|consen 173 SIITGDLLIIIAQIIVAI-QMVCEEKQL 199 (372)
T ss_pred cchhhhHHHHHHHHHHHH-HHHHHHhhh
Confidence 236799999999999999 455566654
No 29
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=98.37 E-value=2.3e-05 Score=62.43 Aligned_cols=125 Identities=18% Similarity=0.128 Sum_probs=87.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHHHHHHHHHHHHHHHc-CC-CccCccchhHHHHHHHH-HHHHhhhcc
Q 042552 14 ALFLSVASSVSIVICNKALMSNLGFPFATTLTSWHLMVTFCTLHAAQRL-NF-FESKAVDVKTVMLFGIL-NGISIGLLN 90 (179)
Q Consensus 14 ~~~~~~~~S~~~~~~NK~ll~~~~f~~p~~lt~~q~~~~~~~~~i~~~~-~~-~~~~~~~~~~~lp~~l~-~~~~~~~~n 90 (179)
..+.-..+=......+|...++++-+ +......++.++.+.+...... +. .+.++.++...+-.+++ ......+.+
T Consensus 132 ~~l~a~~~~a~~~~~~k~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (260)
T TIGR00950 132 LGLGSGISFALGTVLYKRLVKKEGPE-LLQFTGWVLLLGALLLLPFAWFLGPNPQALSLQWGALLYLGLIGTALAYFLWN 210 (260)
T ss_pred HHHHHHHHHHHHHHHHhHHhhcCCch-HHHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444456678877654422 4566667888887776654322 21 11111122234445554 456777889
Q ss_pred cccccchhhHHHHHhHHHHHHHHHHHHHHhccccChhhhhHHhHhhhhh
Q 042552 91 LSLGFNSVGFYQMTKLAIIPFTVLLETLFLKKQFSQKIKFSLFLLLVGV 139 (179)
Q Consensus 91 ~sl~~~sv~~~~i~k~~~~~~~~~~~~~~~~~~~s~~~~~sl~li~~Gv 139 (179)
.++++.+.+.........|++.++++++++||+++..++.+..++..|+
T Consensus 211 ~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~E~~~~~~~~G~~li~~g~ 259 (260)
T TIGR00950 211 KGLTLVDPSAASILALAEPLVALLLGLLILGETLSLPQLIGGALIIAAV 259 (260)
T ss_pred HHHhcCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999999986
No 30
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=98.28 E-value=4.5e-05 Score=62.56 Aligned_cols=103 Identities=17% Similarity=0.135 Sum_probs=79.2
Q ss_pred chhHHHHHHHH----HHHHhhhcccccccchhhHHHHHhH-HHHHHHHHHHHHHhccccChhh----hhHHhHhhhhhee
Q 042552 71 DVKTVMLFGIL----NGISIGLLNLSLGFNSVGFYQMTKL-AIIPFTVLLETLFLKKQFSQKI----KFSLFLLLVGVGI 141 (179)
Q Consensus 71 ~~~~~lp~~l~----~~~~~~~~n~sl~~~sv~~~~i~k~-~~~~~~~~~~~~~~~~~~s~~~----~~sl~li~~Gv~~ 141 (179)
+.++.++.++. .+..-.+...|.++..++....+-. ..+.+..+.+.+++||+.++++ ..++++++.|+++
T Consensus 54 ~~~~~~~~g~l~G~~w~ig~~~~~~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~~~~~~~~g~~l~l~G~~l 133 (290)
T TIGR00776 54 WALSIFLVGLLSGAFWALGQINQFKSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSIQTLLGLLALILIIIGVYL 133 (290)
T ss_pred cccHHHHHHHHHHHHHHhhhhhHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhHhe
Confidence 33555555554 5555577778889999998877776 3344556778999999999999 9999999999998
Q ss_pred eeecCcc-------ch-HHHHHHHHHHHHHHHHHHHHHcc
Q 042552 142 ASVTDLQ-------LN-MVGTILSLLAIVTTCVGQIVSFF 173 (179)
Q Consensus 142 ~~~~d~~-------~~-~~G~~~~l~s~~~~a~~~i~~~~ 173 (179)
.+..+.+ .+ ..|+.+++++.+++++|.+..|+
T Consensus 134 ~~~~~~~~~~~~~~~~~~~Gi~~~l~sg~~y~~~~~~~~~ 173 (290)
T TIGR00776 134 TSRSKDKSAGIKSEFNFKKGILLLLMSTIGYLVYVVVAKA 173 (290)
T ss_pred EEeccccccccccccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 7653321 33 78999999999999999888753
No 31
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=98.07 E-value=0.00029 Score=58.72 Aligned_cols=161 Identities=16% Similarity=0.135 Sum_probs=106.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCCCch-HHHHHHHHHHHHHHHHHH--HHHcCC--Ccc-Cc------cchhHH---HH
Q 042552 13 GALFLSVASSVSIVICNKALMSNLGFPF-ATTLTSWHLMVTFCTLHA--AQRLNF--FES-KA------VDVKTV---ML 77 (179)
Q Consensus 13 ~~~~~~~~~S~~~~~~NK~ll~~~~f~~-p~~lt~~q~~~~~~~~~i--~~~~~~--~~~-~~------~~~~~~---lp 77 (179)
.....--+-+.++.+.-|+--.+++.+| |.+..++-=....+++.. .+..++ -+. +. ..+++. ..
T Consensus 18 ~~l~~~t~~~~~l~l~l~ys~~~~~~~f~~tt~v~~~Ei~Kl~~c~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~lk~~v 97 (345)
T KOG2234|consen 18 LSLIVLTAQNTALTLLLRYSRTREKPMFLPTTAVFLTEVIKLVFCLFLLLFEERKYAKKSLKSLSKEILAAPRETLKVSV 97 (345)
T ss_pred HHHHHHHHHHhhHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhhcCHHHHhChHHHHHHHH
Confidence 3344445556666666676666554443 555544433333322222 121111 010 00 112233 33
Q ss_pred HHHHHHHHhhhcccccccchhhHHHHHhHHHHHHHHHHHHHHhccccChhhhhHHhHhhhhheeeeecC-----------
Q 042552 78 FGILNGISIGLLNLSLGFNSVGFYQMTKLAIIPFTVLLETLFLKKQFSQKIKFSLFLLLVGVGIASVTD----------- 146 (179)
Q Consensus 78 ~~l~~~~~~~~~n~sl~~~sv~~~~i~k~~~~~~~~~~~~~~~~~~~s~~~~~sl~li~~Gv~~~~~~d----------- 146 (179)
-++.++.+--+...++.+.+.++||+.-...+..++++..++++||.++++|.++++...|+.+.-.++
T Consensus 98 Pa~iYalqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~Qw~Al~lL~~Gv~~vQ~~~~~~~~a~~~~~ 177 (345)
T KOG2234|consen 98 PALIYALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRLQWMALVLLFAGVALVQLPSLSPTGAKSESS 177 (345)
T ss_pred HHHHHHHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhccCCCCCCccCCCc
Confidence 344555544577788999999999999999999999999999999999999999999999998865211
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHcc
Q 042552 147 LQLNMVGTILSLLAIVTTCVGQIVSFF 173 (179)
Q Consensus 147 ~~~~~~G~~~~l~s~~~~a~~~i~~~~ 173 (179)
.+-++.|....+.+++..++-++|.||
T Consensus 178 ~~n~~~G~~avl~~c~~SgfAgvYfEk 204 (345)
T KOG2234|consen 178 AQNPFLGLVAVLVACFLSGFAGVYFEK 204 (345)
T ss_pred ccchhhhHHHHHHHHHHHHHHHHHHHH
Confidence 124578999999999999999998854
No 32
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=97.98 E-value=0.00013 Score=51.60 Aligned_cols=73 Identities=16% Similarity=0.155 Sum_probs=61.4
Q ss_pred cchhHHHHHHH---HHHHHhhhcccccccchhhHHHHHhHHHHHHHHHHHHHHhccccChhhhhHHhHhhhhheee
Q 042552 70 VDVKTVMLFGI---LNGISIGLLNLSLGFNSVGFYQMTKLAIIPFTVLLETLFLKKQFSQKIKFSLFLLLVGVGIA 142 (179)
Q Consensus 70 ~~~~~~lp~~l---~~~~~~~~~n~sl~~~sv~~~~i~k~~~~~~~~~~~~~~~~~~~s~~~~~sl~li~~Gv~~~ 142 (179)
.+++...+.++ ++..+..+-..+++..|++....+-+..+..+.+.+++++|||+|.++++++.+++.|+++.
T Consensus 32 ~~~~~l~~~~~~~~~~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i 107 (111)
T PRK15051 32 RRKHIVLWLGLALACLGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVIL 107 (111)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHH
Confidence 33444444443 46678889999999999999999999899999999999999999999999999999998764
No 33
>COG2510 Predicted membrane protein [Function unknown]
Probab=97.78 E-value=0.00047 Score=49.69 Aligned_cols=123 Identities=19% Similarity=0.177 Sum_probs=86.7
Q ss_pred HHHHHHHHHHHHHhhccCCCchHHHHHHHHHHHHHHHHHHH-HHcCCCc-cCccchh---HHHHHHHHHHHHhhhccccc
Q 042552 19 VASSVSIVICNKALMSNLGFPFATTLTSWHLMVTFCTLHAA-QRLNFFE-SKAVDVK---TVMLFGILNGISIGLLNLSL 93 (179)
Q Consensus 19 ~~~S~~~~~~NK~ll~~~~f~~p~~lt~~q~~~~~~~~~i~-~~~~~~~-~~~~~~~---~~lp~~l~~~~~~~~~n~sl 93 (179)
..+.....++-|.-++ +.+ |.+=|..+..+....+... -..|..+ +...+.| -+..-++....+-.+-..++
T Consensus 12 A~fa~L~~iF~KIGl~--~vd-p~~At~IRtiVi~~~l~~v~~~~g~~~~~~~~~~k~~lflilSGla~glswl~Yf~AL 88 (140)
T COG2510 12 ALFAGLTPIFAKIGLE--GVD-PDFATTIRTIVILIFLLIVLLVTGNWQAGGEIGPKSWLFLILSGLAGGLSWLLYFRAL 88 (140)
T ss_pred HHHHHHHHHHHHHhcc--ccC-ccHHHHHHHHHHHHHHHHHHHhcCceecccccCcceehhhhHHHHHHHHHHHHHHHHH
Confidence 3334445678888887 444 8888888888777666543 2233332 2223333 34444566777777777888
Q ss_pred ccchhhHHHHHhHHHHHHHHHHHHHHhccccChhhhhHHhHhhhhheeeee
Q 042552 94 GFNSVGFYQMTKLAIIPFTVLLETLFLKKQFSQKIKFSLFLLLVGVGIASV 144 (179)
Q Consensus 94 ~~~sv~~~~i~k~~~~~~~~~~~~~~~~~~~s~~~~~sl~li~~Gv~~~~~ 144 (179)
+--..|-..=+-..+|.++++++..++|||+|.+++.++.++++|+.+.+.
T Consensus 89 k~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gailvs~ 139 (140)
T COG2510 89 KKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAILVSL 139 (140)
T ss_pred hcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeEec
Confidence 877766655555578899999999999999999999999999999987653
No 34
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=97.76 E-value=0.0012 Score=48.33 Aligned_cols=123 Identities=18% Similarity=0.095 Sum_probs=83.5
Q ss_pred HHHHHHHHHHHHhhcc-----CCCchHHHHHHHHHHHHHHHHHHHH-HcCCCc-------cCc-------cchhHHHHHH
Q 042552 20 ASSVSIVICNKALMSN-----LGFPFATTLTSWHLMVTFCTLHAAQ-RLNFFE-------SKA-------VDVKTVMLFG 79 (179)
Q Consensus 20 ~~S~~~~~~NK~ll~~-----~~f~~p~~lt~~q~~~~~~~~~i~~-~~~~~~-------~~~-------~~~~~~lp~~ 79 (179)
.++..-..+.|..+++ .+.+ |..+....-..+.+.+.+.. ..+..+ .++ ..+..++..+
T Consensus 10 ~~~al~~v~~~~~~~~~~~~~~~~~-~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (153)
T PF03151_consen 10 LFSALRNVLIKKLLKKVSSNSKKLN-PLNLLYYNSPISFIILLPLAFLLEGPQLSSFFSEIFGEELSSDPNFIFLLILSG 88 (153)
T ss_pred HHHHHHHHHHHHHHhcccccccCCC-HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhhhcchHHHHHHHHHHH
Confidence 3334444555666665 4665 66666666666665554431 111111 111 1112334444
Q ss_pred HHHHHHhhhcccccccchhhHHHHHhHHHHHHHHHHHHHHhccccChhhhhHHhHhhhhheeee
Q 042552 80 ILNGISIGLLNLSLGFNSVGFYQMTKLAIIPFTVLLETLFLKKQFSQKIKFSLFLLLVGVGIAS 143 (179)
Q Consensus 80 l~~~~~~~~~n~sl~~~sv~~~~i~k~~~~~~~~~~~~~~~~~~~s~~~~~sl~li~~Gv~~~~ 143 (179)
+.....-..+...+++.|.-.++++.....+++.+++.++++|+++..++.++.+.+.|+.+.+
T Consensus 89 ~~~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~Ys 152 (153)
T PF03151_consen 89 LLAFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLLYS 152 (153)
T ss_pred HHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHheee
Confidence 5555556788889999999999999999999999999999999999999999999999997764
No 35
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=97.67 E-value=0.001 Score=54.32 Aligned_cols=106 Identities=11% Similarity=-0.023 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-cCCCc---cCccchhHHHHHHHH-HHHHhhhcccccccchhhHHHHHhHHHHHHHHHH
Q 042552 41 ATTLTSWHLMVTFCTLHAAQR-LNFFE---SKAVDVKTVMLFGIL-NGISIGLLNLSLGFNSVGFYQMTKLAIIPFTVLL 115 (179)
Q Consensus 41 p~~lt~~q~~~~~~~~~i~~~-~~~~~---~~~~~~~~~lp~~l~-~~~~~~~~n~sl~~~sv~~~~i~k~~~~~~~~~~ 115 (179)
+...+..|+.++...+.+... .+... ++...+..++-.++. ......+-+.++++.+.+...+.....|++.+++
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~i~~s~~~~~l~~~~~~~~~~~~~s~~~~l~Pi~a~i~ 256 (292)
T PRK11272 177 GMMAGAAEMLAAGVVLLIASLLSGERLTALPTLSGFLALGYLAVFGSIIAISAYMYLLRNVRPALATSYAYVNPVVAVLL 256 (292)
T ss_pred chHHHHHHHHHHHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHH
Confidence 556778898888776655432 22111 111123344445553 4456778899999999999999999999999999
Q ss_pred HHHHhccccChhhhhHHhHhhhhheeeeecC
Q 042552 116 ETLFLKKQFSQKIKFSLFLLLVGVGIASVTD 146 (179)
Q Consensus 116 ~~~~~~~~~s~~~~~sl~li~~Gv~~~~~~d 146 (179)
+++++||+++..++.+..++..|+.+....+
T Consensus 257 ~~~~l~E~~t~~~iiG~~lIi~gv~~~~~~~ 287 (292)
T PRK11272 257 GTGLGGETLSPIEWLALGVIVFAVVLVTLGK 287 (292)
T ss_pred HHHHcCCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999997765443
No 36
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=97.64 E-value=1.9e-05 Score=63.56 Aligned_cols=156 Identities=17% Similarity=0.219 Sum_probs=106.7
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHHHHHHHHHHHHH---HHcCCCccCccchhHHHHHHH
Q 042552 4 MSSFQLGVIGALFLSVASSVSIVICNKALMSNLGFPFATTLTSWHLMVTFCTLHAA---QRLNFFESKAVDVKTVMLFGI 80 (179)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~S~~~~~~NK~ll~~~~f~~p~~lt~~q~~~~~~~~~i~---~~~~~~~~~~~~~~~~lp~~l 80 (179)
+|+...+.....+. +..+.+++...|-+.. + |.-+.-.+++.-.+..+.+ ++.+.+ .|+-.++.++.=++
T Consensus 33 ~d~p~~gl~l~~vs-~ff~~~~vv~t~~~e~----~-p~e~a~~r~l~~mlit~pcliy~~~~v~-gp~g~R~~LiLRg~ 105 (346)
T KOG4510|consen 33 KDKPNLGLLLLTVS-YFFNSCMVVSTKVLEN----D-PMELASFRLLVRMLITYPCLIYYMQPVI-GPEGKRKWLILRGF 105 (346)
T ss_pred cCCCccCceehhhH-HHHhhHHHhhhhhhcc----C-hhHhhhhhhhhehhhhheEEEEEeeeee-cCCCcEEEEEeehh
Confidence 45666665555555 6667777777777654 2 5566655555555554443 222221 11112222333355
Q ss_pred HHHHHhhhcccccccchhhHHHHHhHHHHHHHHHHHHHHhccccChhhhhHHhHhhhhheeeee-----cCc--------
Q 042552 81 LNGISIGLLNLSLGFNSVGFYQMTKLAIIPFTVLLETLFLKKQFSQKIKFSLFLLLVGVGIASV-----TDL-------- 147 (179)
Q Consensus 81 ~~~~~~~~~n~sl~~~sv~~~~i~k~~~~~~~~~~~~~~~~~~~s~~~~~sl~li~~Gv~~~~~-----~d~-------- 147 (179)
.....+....+|++|.|++=..++--++|.++.++++.++||++|+-..+.......||++..- ||.
T Consensus 106 mG~tgvmlmyya~~~mslaDA~vItFssPvft~ifaw~~LkE~~t~~eaL~s~itl~GVVLIvRPpFlFG~~t~g~~~s~ 185 (346)
T KOG4510|consen 106 MGFTGVMLMYYALMYMSLADAVVITFSSPVFTIIFAWAFLKEPFTKFEALGSLITLLGVVLIVRPPFLFGDTTEGEDSSQ 185 (346)
T ss_pred hhhhHHHHHHHHHhhcchhheEEEEecChHHHHHHHHHHHcCCCcHHHHHHHHHhhheEEEEecCCcccCCCcccccccc
Confidence 5566677889999999999999999899999999999999999999999999999999988632 332
Q ss_pred -cchHHHHHHHHHHHHHHHH
Q 042552 148 -QLNMVGTILSLLAIVTTCV 166 (179)
Q Consensus 148 -~~~~~G~~~~l~s~~~~a~ 166 (179)
+.+..|-..++.+.+..|-
T Consensus 186 ~~~~~~gt~aai~s~lf~as 205 (346)
T KOG4510|consen 186 VEYDIPGTVAAISSVLFGAS 205 (346)
T ss_pred ccccCCchHHHHHhHhhhhh
Confidence 2456787777777777664
No 37
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=97.52 E-value=0.0026 Score=53.84 Aligned_cols=116 Identities=14% Similarity=0.132 Sum_probs=80.5
Q ss_pred HHHHHhhccCCCchHHHHHHHHHHHHHHHHHHHH-H-cCC-Ccc--Cccchh--HHHHHHHHHHHHhhhcccccccchhh
Q 042552 27 ICNKALMSNLGFPFATTLTSWHLMVTFCTLHAAQ-R-LNF-FES--KAVDVK--TVMLFGILNGISIGLLNLSLGFNSVG 99 (179)
Q Consensus 27 ~~NK~ll~~~~f~~p~~lt~~q~~~~~~~~~i~~-~-~~~-~~~--~~~~~~--~~lp~~l~~~~~~~~~n~sl~~~sv~ 99 (179)
...|.... ++|.+...+++|+.+..+...+.. . .+. .+. .+.+.. .++-.++...+...+.|.++++.+.+
T Consensus 206 il~~~~~~--~~~~~~~~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~y~~i~t~lay~lw~~~v~~~ga~ 283 (358)
T PLN00411 206 ILQAHIMS--EYPAAFTVSFLYTVCVSIVTSMIGLVVEKNNPSVWIIHFDITLITIVTMAIITSVYYVIHSWTVRHKGPL 283 (358)
T ss_pred HHHHHHHH--HcCcHhHHHHHHHHHHHHHHHHHHHHHccCCcccceeccchHHHHHHHHHHHHHHHHHHHHHHHhccCch
Confidence 45565555 345456778888887766554321 1 111 110 011111 12223344444566789999999999
Q ss_pred HHHHHhHHHHHHHHHHHHHHhccccChhhhhHHhHhhhhheeeee
Q 042552 100 FYQMTKLAIIPFTVLLETLFLKKQFSQKIKFSLFLLLVGVGIASV 144 (179)
Q Consensus 100 ~~~i~k~~~~~~~~~~~~~~~~~~~s~~~~~sl~li~~Gv~~~~~ 144 (179)
...+.-...|++.++++++++||+++..++++.++++.|+.+...
T Consensus 284 ~as~~~~L~PV~a~llg~l~LgE~lt~~~~iG~~LIl~Gv~l~~~ 328 (358)
T PLN00411 284 YLAIFKPLSILIAVVMGAIFLNDSLYLGCLIGGILITLGFYAVMW 328 (358)
T ss_pred HHHHHHhHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999988654
No 38
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]
Probab=97.50 E-value=8.2e-05 Score=57.60 Aligned_cols=101 Identities=14% Similarity=0.072 Sum_probs=89.7
Q ss_pred hhHHHHHHHHHHHHhhhcccccccchhhHHHHHhHHHHHHHHHHHHHHhccccChhhhhHHhHhhhhheeeeecCc--cc
Q 042552 72 VKTVMLFGILNGISIGLLNLSLGFNSVGFYQMTKLAIIPFTVLLETLFLKKQFSQKIKFSLFLLLVGVGIASVTDL--QL 149 (179)
Q Consensus 72 ~~~~lp~~l~~~~~~~~~n~sl~~~sv~~~~i~k~~~~~~~~~~~~~~~~~~~s~~~~~sl~li~~Gv~~~~~~d~--~~ 149 (179)
.++..|.+++..+.-+.--.+++..|.+-.+-+-++--.++.++++..+|+|+.--++++.++.+.|+.+.++.|. .-
T Consensus 53 ~~~taPF~i~Wt~aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~kIlaailAI~GiVmiay~DN~~a~ 132 (290)
T KOG4314|consen 53 FIRTAPFSIFWTGANYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGFKILAAILAIGGIVMIAYADNEHAD 132 (290)
T ss_pred eeeecceEEEEecCCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhhhHHHHHHHhCcEEEEEeccchhhh
Confidence 3467888888888777888899999999888888888899999999999999999999999999999999887665 46
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHc
Q 042552 150 NMVGTILSLLAIVTTCVGQIVSF 172 (179)
Q Consensus 150 ~~~G~~~~l~s~~~~a~~~i~~~ 172 (179)
++.|+.+++.|....|+|.+.-|
T Consensus 133 e~iGi~~AV~SA~~aAlYKV~FK 155 (290)
T KOG4314|consen 133 EIIGIACAVGSAFMAALYKVLFK 155 (290)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999998873
No 39
>KOG2766 consensus Predicted membrane protein [Function unknown]
Probab=97.43 E-value=9.3e-05 Score=59.33 Aligned_cols=137 Identities=15% Similarity=0.162 Sum_probs=94.4
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHHHHHHHHHHHH---HHHcCCCccCccchhHHHHHHHH
Q 042552 5 SSFQLGVIGALFLSVASSVSIVICNKALMSNLGFPFATTLTSWHLMVTFCTLHA---AQRLNFFESKAVDVKTVMLFGIL 81 (179)
Q Consensus 5 ~~~~~~~~~~~~~~~~~S~~~~~~NK~ll~~~~f~~p~~lt~~q~~~~~~~~~i---~~~~~~~~~~~~~~~~~lp~~l~ 81 (179)
+|+-+...+.-=.=-+++.+..+.|.++-+. +.+-|.+=++.....-+++--. .|+ +.+ +..|++.+.+++.
T Consensus 13 tkk~li~~~LGQiLSL~~t~~a~tss~la~k-~iN~Pt~QtFl~Y~LLalVY~~~~~fR~-~~~---~~~~~hYilla~~ 87 (336)
T KOG2766|consen 13 TKKTLIGLGLGQILSLLITSTAFTSSELARK-GINAPTSQTFLNYVLLALVYGPIMLFRR-KYI---KAKWRHYILLAFV 87 (336)
T ss_pred chhhhheeeHHHHHHHHHHcchhhhHHHHhc-cCCCccHHHHHHHHHHHHHHhhHHHhhh-HHH---HHHHHHhhheeEE
Confidence 4444443333333345666777788888764 4667877776665443333221 122 211 2345666666655
Q ss_pred HHHHhhhcccccccchhhHHHHHhHHHHHHHHHHHHHHhccccChhhhhHHhHhhhhheeeeecC
Q 042552 82 NGISIGLLNLSLGFNSVGFYQMTKLAIIPFTVLLETLFLKKQFSQKIKFSLFLLLVGVGIASVTD 146 (179)
Q Consensus 82 ~~~~~~~~n~sl~~~sv~~~~i~k~~~~~~~~~~~~~~~~~~~s~~~~~sl~li~~Gv~~~~~~d 146 (179)
-.-.-.+--.++||.|..-.+.+-+-..|.++++++++++.|+.+.++.+++..+.|+.+....|
T Consensus 88 DVEaNy~vV~AyQyTsmtSi~lLDcwaip~v~~lsw~fLktrYrlmki~gV~iCi~GvvmvV~sD 152 (336)
T KOG2766|consen 88 DVEANYFVVKAYQYTSMTSIMLLDCWAIPCVLVLSWFFLKTRYRLMKISGVVICIVGVVMVVFSD 152 (336)
T ss_pred eecccEEEeeehhhcchHHHHHHHHhhhHHHHHHHHHHHHHHHhhheeeeEEeEecceEEEEEee
Confidence 44444455689999999999999999999999999999999999999999999999998876655
No 40
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=97.38 E-value=0.0015 Score=53.54 Aligned_cols=120 Identities=16% Similarity=0.088 Sum_probs=77.9
Q ss_pred HHHHHHHHhhccCCCchHHHHHHHHHHHHHHHHHHHHH-cCCCccCc---------cchhHHHHHH----H-HHHHHhhh
Q 042552 24 SIVICNKALMSNLGFPFATTLTSWHLMVTFCTLHAAQR-LNFFESKA---------VDVKTVMLFG----I-LNGISIGL 88 (179)
Q Consensus 24 ~~~~~NK~ll~~~~f~~p~~lt~~q~~~~~~~~~i~~~-~~~~~~~~---------~~~~~~lp~~----l-~~~~~~~~ 88 (179)
.-....|...++.+.+ |..++..|+..+.+.+.+... .+..+... .......... . .+.....+
T Consensus 159 ~~~v~~k~~~~~~~~~-~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (302)
T TIGR00817 159 SRNIFSKKAMTIKSLD-KTNLYAYISIMSLFLLSPPAFITEGPPFLPHGFMQAISGVNVTKIYTVSLVAAMGFFHFYQQV 237 (302)
T ss_pred HHHHHHHHhhccCCCC-cccHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHH
Confidence 3445666666644454 788999999888876655422 12111000 0111112111 1 11111135
Q ss_pred cccccccchhhHHHHHhHHHHHHHHHHHHHHhccccChhhhhHHhHhhhhheeeee
Q 042552 89 LNLSLGFNSVGFYQMTKLAIIPFTVLLETLFLKKQFSQKIKFSLFLLLVGVGIASV 144 (179)
Q Consensus 89 ~n~sl~~~sv~~~~i~k~~~~~~~~~~~~~~~~~~~s~~~~~sl~li~~Gv~~~~~ 144 (179)
.+.++++.|...+.+.-...|++.++++++++||+++..++++..++..|+.+...
T Consensus 238 ~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~lge~lt~~~~~G~~lil~Gv~l~~~ 293 (302)
T TIGR00817 238 AFMLLGRVSPLTHSVGNCMKRVVVIVVSILFFGTKISPQQVFGTGIAIAGVFLYSR 293 (302)
T ss_pred HHHHHccCCchHHHHHhhhhhhheeeeehhhcCCCCchhHHHHHHHHHHHHHHHHH
Confidence 55789999999999998777777778899999999999999999999999977543
No 41
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=97.32 E-value=0.0083 Score=49.04 Aligned_cols=69 Identities=10% Similarity=0.077 Sum_probs=59.9
Q ss_pred HHHHHH-HHHHhhhcccccccchhhHHHHHhHHHHHHHHHHHHHHhccccChhhhhHHhHhhhhheeeee
Q 042552 76 MLFGIL-NGISIGLLNLSLGFNSVGFYQMTKLAIIPFTVLLETLFLKKQFSQKIKFSLFLLLVGVGIASV 144 (179)
Q Consensus 76 lp~~l~-~~~~~~~~n~sl~~~sv~~~~i~k~~~~~~~~~~~~~~~~~~~s~~~~~sl~li~~Gv~~~~~ 144 (179)
+-++++ ..+...+.|.++++.+.+...+.-...|++..+++++++||+++..++++..+++.|++..+.
T Consensus 212 l~lgv~~t~~~~~l~~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~~~iG~~lIl~~~~~~~~ 281 (293)
T PRK10532 212 LAVAILSTALPYSLEMIALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTLIQWLALGAIIAASMGSTL 281 (293)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHh
Confidence 445554 455677889999999999999999999999999999999999999999999999999877643
No 42
>PRK11689 aromatic amino acid exporter; Provisional
Probab=97.30 E-value=0.0062 Score=49.84 Aligned_cols=69 Identities=12% Similarity=0.134 Sum_probs=59.1
Q ss_pred HHHHHHHHHHhhhcccccccchhhHHHHHhHHHHHHHHHHHHHHhccccChhhhhHHhHhhhhheeeee
Q 042552 76 MLFGILNGISIGLLNLSLGFNSVGFYQMTKLAIIPFTVLLETLFLKKQFSQKIKFSLFLLLVGVGIASV 144 (179)
Q Consensus 76 lp~~l~~~~~~~~~n~sl~~~sv~~~~i~k~~~~~~~~~~~~~~~~~~~s~~~~~sl~li~~Gv~~~~~ 144 (179)
+-.++.......+-|.++++.+.+...+.-...|++.++++++++||+++..++.+.+++..|+.+...
T Consensus 219 ~~~~~~t~~~~~l~~~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~~~iG~~lI~~gv~~~~~ 287 (295)
T PRK11689 219 LLAAAAMGFGYAAWNVGILHGNMTLLATASYFTPVLSAALAALLLSTPLSFSFWQGVAMVTAGSLLCWL 287 (295)
T ss_pred HHHHHHHHHHHHHHHHHHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhHHHHhh
Confidence 334444555677889999999999999999999999999999999999999999999999999876543
No 43
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=97.25 E-value=0.0015 Score=53.01 Aligned_cols=62 Identities=16% Similarity=0.251 Sum_probs=55.0
Q ss_pred HHHHHHhhhcccccccchhhHHHHHhHHHHHHHHHHHHHHhccccChhhhhHHhHhhhhhee
Q 042552 80 ILNGISIGLLNLSLGFNSVGFYQMTKLAIIPFTVLLETLFLKKQFSQKIKFSLFLLLVGVGI 141 (179)
Q Consensus 80 l~~~~~~~~~n~sl~~~sv~~~~i~k~~~~~~~~~~~~~~~~~~~s~~~~~sl~li~~Gv~~ 141 (179)
+.......+.+.++++.+.+........+|++..+++++++||+++..++.+..++..|+.+
T Consensus 219 ~~s~l~~~l~~~al~~~~a~~~~~~~~l~pv~a~l~g~~~lgE~~~~~~~iG~~lil~Gv~l 280 (281)
T TIGR03340 219 LMIGGAYALVLWAMTRLPVATVVALRNTSIVFAVVLGIWFLNERWYLTRLMGVCIIVAGLVV 280 (281)
T ss_pred HHHHHHHHHHHHHHhhCCceEEEeecccHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhHHh
Confidence 44555677888999999999988899889999999999999999999999999999999864
No 44
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=97.18 E-value=0.0026 Score=45.59 Aligned_cols=73 Identities=16% Similarity=0.170 Sum_probs=60.7
Q ss_pred hHHHHHHHHHHHHhhhcccccccchhhHHHHH-hHHHHHHHHHHHHHHhccccChhhhhHHhHhhhhheeeeec
Q 042552 73 KTVMLFGILNGISIGLLNLSLGFNSVGFYQMT-KLAIIPFTVLLETLFLKKQFSQKIKFSLFLLLVGVGIASVT 145 (179)
Q Consensus 73 ~~~lp~~l~~~~~~~~~n~sl~~~sv~~~~i~-k~~~~~~~~~~~~~~~~~~~s~~~~~sl~li~~Gv~~~~~~ 145 (179)
.+.....+++..+..+-..+++++|++...-. .......+.+++.+++||+.|..+++++.++++|++.....
T Consensus 31 ~~~~~~i~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~l~ 104 (120)
T PRK10452 31 GGFILMLVMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIKSG 104 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhcC
Confidence 34455666788899999999999999986655 45677888889999999999999999999999999775443
No 45
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=97.07 E-value=0.021 Score=46.74 Aligned_cols=72 Identities=14% Similarity=0.146 Sum_probs=58.1
Q ss_pred HHHHHHH-HHHHhhhcccccccchhhHHHHHhHHHHHHHHHHHHHHhccccChhhhhHHhHhhhhheeeeecC
Q 042552 75 VMLFGIL-NGISIGLLNLSLGFNSVGFYQMTKLAIIPFTVLLETLFLKKQFSQKIKFSLFLLLVGVGIASVTD 146 (179)
Q Consensus 75 ~lp~~l~-~~~~~~~~n~sl~~~sv~~~~i~k~~~~~~~~~~~~~~~~~~~s~~~~~sl~li~~Gv~~~~~~d 146 (179)
++-++++ ..+...+-+.++++.+.+-..+.-...|++..+++++++||+++..++.+..+++.|+.+...+.
T Consensus 217 l~~l~i~~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~~~iG~~lI~~gv~l~~~~~ 289 (299)
T PRK11453 217 LMYLAFVATIVGYGIWGTLLGRYETWRVAPLSLLVPVVGLASAALLLDERLTGLQFLGAVLIMAGLYINVFGL 289 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHhcch
Confidence 3444433 44566778888888888888888888888889999999999999999999999999998765443
No 46
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=97.07 E-value=0.022 Score=47.90 Aligned_cols=125 Identities=12% Similarity=0.023 Sum_probs=80.3
Q ss_pred HHHHHHHHHHHHHHhhccCC-----CchHHHHHHHHHHHHHHHHHHHHH-cCCC--c---------cCccchhHHHHHHH
Q 042552 18 SVASSVSIVICNKALMSNLG-----FPFATTLTSWHLMVTFCTLHAAQR-LNFF--E---------SKAVDVKTVMLFGI 80 (179)
Q Consensus 18 ~~~~S~~~~~~NK~ll~~~~-----f~~p~~lt~~q~~~~~~~~~i~~~-~~~~--~---------~~~~~~~~~lp~~l 80 (179)
-.++...-....|.++++++ .+ +..+...++.++.+.+..... .+.. . .+.......+...+
T Consensus 202 s~~~~a~~~i~~k~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~lp~~~~~e~~~~~~~~~~~~~~~~~~~~~~~l~~i~ 280 (350)
T PTZ00343 202 SNLGSSLRSIFAKKTMKNKSEIGENLT-ASNIYMLLTLIASLISLPLVLFFEGKKWVPVWTNYTANMTNYTKGIIIFKIF 280 (350)
T ss_pred HHHHHHHHHHHHHHHhcccccccccCC-HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhcccccchHHHHHHHH
Confidence 34444455566677776542 33 454666667777765544321 1110 0 01111122222333
Q ss_pred HHHHHhhhcc----cccccchhhHHHHHhHHHHHHHHHHHHHHhccccChhhhhHHhHhhhhheeee
Q 042552 81 LNGISIGLLN----LSLGFNSVGFYQMTKLAIIPFTVLLETLFLKKQFSQKIKFSLFLLLVGVGIAS 143 (179)
Q Consensus 81 ~~~~~~~~~n----~sl~~~sv~~~~i~k~~~~~~~~~~~~~~~~~~~s~~~~~sl~li~~Gv~~~~ 143 (179)
..+....+.| .+++++|...+++.-...|+++++++++++||+++..++++..++++|+.+.+
T Consensus 281 ~s~l~~~l~n~~~f~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~lt~~~~iG~~lii~Gv~lYs 347 (350)
T PTZ00343 281 FSGVWYYLYNEVAFYCLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQVTLLGYLGMAVAILGALLYS 347 (350)
T ss_pred HHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhhhHHHhCCCCchHhHHHHHHHHHHHHHHh
Confidence 3344444555 59999999999999999999999999999999999999999999999987643
No 47
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=96.97 E-value=0.03 Score=45.78 Aligned_cols=65 Identities=11% Similarity=0.101 Sum_probs=56.9
Q ss_pred HHHHHHHHhhhcccccccchhhHHHHHhHHHHHHHHHHHHHHhccccChhhhhHHhHhhhhheee
Q 042552 78 FGILNGISIGLLNLSLGFNSVGFYQMTKLAIIPFTVLLETLFLKKQFSQKIKFSLFLLLVGVGIA 142 (179)
Q Consensus 78 ~~l~~~~~~~~~n~sl~~~sv~~~~i~k~~~~~~~~~~~~~~~~~~~s~~~~~sl~li~~Gv~~~ 142 (179)
.++.......+-+.++++.+.+.....-...|++..+.++++++|+++..++.+..++..|+.+.
T Consensus 219 ~g~~t~i~~~~~~~a~~~~~a~~~s~~~~l~Pv~a~~~g~l~l~E~~~~~~~~G~~lI~~~~~v~ 283 (296)
T PRK15430 219 AGIVTTVPLLCFTAAATRLRLSTLGFFQYIGPTLMFLLAVTFYGEKPGADKMVTFAFIWVALAIF 283 (296)
T ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 34455567789999999999999999999999999999999999999999999999997776553
No 48
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=96.91 E-value=0.05 Score=43.81 Aligned_cols=136 Identities=18% Similarity=0.082 Sum_probs=95.2
Q ss_pred HHHHhhccCCCchHHHHHHHHHHHHHHHHHHHHHcCCCccCccchhHHHHHHHHHHHHhhhcccccccchhhHHHHHhHH
Q 042552 28 CNKALMSNLGFPFATTLTSWHLMVTFCTLHAAQRLNFFESKAVDVKTVMLFGILNGISIGLLNLSLGFNSVGFYQMTKLA 107 (179)
Q Consensus 28 ~NK~ll~~~~f~~p~~lt~~q~~~~~~~~~i~~~~~~~~~~~~~~~~~lp~~l~~~~~~~~~n~sl~~~sv~~~~i~k~~ 107 (179)
+-|.++- .+. |.-.+.++..++.+.+....|....+..+.+++.++..++....+-.+=..|++.+|.+....+...
T Consensus 30 ~Ak~LFP--~vG-~~g~t~lRl~~aaLIll~l~RPwr~r~~~~~~~~~~~yGvsLg~MNl~FY~si~riPlGiAVAiEF~ 106 (292)
T COG5006 30 FAKSLFP--LVG-AAGVTALRLAIAALILLALFRPWRRRLSKPQRLALLAYGVSLGGMNLLFYLSIERIPLGIAVAIEFT 106 (292)
T ss_pred HHHHHcc--ccC-hhhHHHHHHHHHHHHHHHHhhHHHhccChhhhHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhhc
Confidence 5566664 333 7889999999988877665332223444556778888888877776677789999999999999977
Q ss_pred HHHHHHHHHHHHhccccChhhhhHHhHhhhhheeee-ec--CccchHHHHHHHHHHHHHHHHHHHHHc
Q 042552 108 IIPFTVLLETLFLKKQFSQKIKFSLFLLLVGVGIAS-VT--DLQLNMVGTILSLLAIVTTCVGQIVSF 172 (179)
Q Consensus 108 ~~~~~~~~~~~~~~~~~s~~~~~sl~li~~Gv~~~~-~~--d~~~~~~G~~~~l~s~~~~a~~~i~~~ 172 (179)
.|..+.++. .|| .+....+.+.+.|..+-. .+ ..+.|..|..+++.+..+.+.|-+.-+
T Consensus 107 GPL~vA~~~----sRr--~~d~vwvaLAvlGi~lL~p~~~~~~~lDp~Gv~~Al~AG~~Wa~YIv~G~ 168 (292)
T COG5006 107 GPLAVALLS----SRR--LRDFVWVALAVLGIWLLLPLGQSVWSLDPVGVALALGAGACWALYIVLGQ 168 (292)
T ss_pred cHHHHHHHh----ccc--hhhHHHHHHHHHHHHhheeccCCcCcCCHHHHHHHHHHhHHHHHHHHHcc
Confidence 776655433 233 345555666666655432 22 246899999999999999999876653
No 49
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=96.77 E-value=0.021 Score=46.74 Aligned_cols=69 Identities=16% Similarity=0.131 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHhhhcccccc-cchhhHHHHHhHHHHHHHHHHHHHHhccccChhhh----hHHhHhhhhheeee
Q 042552 75 VMLFGILNGISIGLLNLSLG-FNSVGFYQMTKLAIIPFTVLLETLFLKKQFSQKIK----FSLFLLLVGVGIAS 143 (179)
Q Consensus 75 ~lp~~l~~~~~~~~~n~sl~-~~sv~~~~i~k~~~~~~~~~~~~~~~~~~~s~~~~----~sl~li~~Gv~~~~ 143 (179)
.+..++.......+-..+++ +++.+...++-...|....+.+++++||+.+++++ ++.++++.|+.+..
T Consensus 214 ~~~~Gi~~~ia~~~y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~~~~~~~iG~~lIi~~~~l~~ 287 (290)
T TIGR00776 214 NILPGLMWGIGNFFYLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKKTKREMIAISVGIILIIIAANILG 287 (290)
T ss_pred HHHHHHHHHHHHHHHHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCCCcceeehhHHHHHHHHHHHHHHh
Confidence 34466666666666678888 99999988888887777777899999999999999 99999999987654
No 50
>PRK11431 multidrug efflux system protein; Provisional
Probab=96.76 E-value=0.0063 Score=42.55 Aligned_cols=69 Identities=16% Similarity=0.017 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHhhhcccccccchhhHHHHHh-HHHHHHHHHHHHHHhccccChhhhhHHhHhhhhheee
Q 042552 74 TVMLFGILNGISIGLLNLSLGFNSVGFYQMTK-LAIIPFTVLLETLFLKKQFSQKIKFSLFLLLVGVGIA 142 (179)
Q Consensus 74 ~~lp~~l~~~~~~~~~n~sl~~~sv~~~~i~k-~~~~~~~~~~~~~~~~~~~s~~~~~sl~li~~Gv~~~ 142 (179)
..+...+++..+..+-..+++..|++..--.= ......+.+++++++||+.|+.+++++.+++.|++..
T Consensus 31 ~~~~~i~~~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l 100 (105)
T PRK11431 31 PSIITVTAMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPARLLSLALIVAGIIGL 100 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhh
Confidence 34445567888888999999999998755444 3567788889999999999999999999999998764
No 51
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=96.75 E-value=0.0058 Score=43.08 Aligned_cols=68 Identities=19% Similarity=0.132 Sum_probs=56.7
Q ss_pred HHHHHHHHHhhhcccccccchhhHHHHHhH-HHHHHHHHHHHHHhccccChhhhhHHhHhhhhheeeee
Q 042552 77 LFGILNGISIGLLNLSLGFNSVGFYQMTKL-AIIPFTVLLETLFLKKQFSQKIKFSLFLLLVGVGIASV 144 (179)
Q Consensus 77 p~~l~~~~~~~~~n~sl~~~sv~~~~i~k~-~~~~~~~~~~~~~~~~~~s~~~~~sl~li~~Gv~~~~~ 144 (179)
..-+++..+..+-..+++..|++...-.-+ .....+.+.+.+++||+.|+.++.++.+++.|++....
T Consensus 35 ~~~~~~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~l 103 (110)
T PRK09541 35 GTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVINL 103 (110)
T ss_pred HHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 344567778888889999999998887765 36677788999999999999999999999999877543
No 52
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=96.74 E-value=0.0057 Score=44.33 Aligned_cols=71 Identities=15% Similarity=0.190 Sum_probs=57.5
Q ss_pred HHHHH-HHHHHhhhcccccccchhhHHHHHhHHHHHHHHHHHHH--HhccccChhhhhHHhHhhhhheeeeecC
Q 042552 76 MLFGI-LNGISIGLLNLSLGFNSVGFYQMTKLAIIPFTVLLETL--FLKKQFSQKIKFSLFLLLVGVGIASVTD 146 (179)
Q Consensus 76 lp~~l-~~~~~~~~~n~sl~~~sv~~~~i~k~~~~~~~~~~~~~--~~~~~~s~~~~~sl~li~~Gv~~~~~~d 146 (179)
+..++ ++..+..+-+.+++..|.+...-.-+..+..+.+.++. ++||+.|..+++++.++++|+.+...++
T Consensus 51 i~lgl~~~~la~~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~~~~ 124 (129)
T PRK02971 51 VLLGLAGYALSMLCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINLPT 124 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccCC
Confidence 44454 57778899999999999999888887766666666663 7999999999999999999998865443
No 53
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=96.63 E-value=0.0067 Score=42.37 Aligned_cols=70 Identities=26% Similarity=0.152 Sum_probs=57.1
Q ss_pred hHHHHHHHHHHHHhhhcccccccchhhHHH-HHhHHHHHHHHHHHHHHhccccChhhhhHHhHhhhhheee
Q 042552 73 KTVMLFGILNGISIGLLNLSLGFNSVGFYQ-MTKLAIIPFTVLLETLFLKKQFSQKIKFSLFLLLVGVGIA 142 (179)
Q Consensus 73 ~~~lp~~l~~~~~~~~~n~sl~~~sv~~~~-i~k~~~~~~~~~~~~~~~~~~~s~~~~~sl~li~~Gv~~~ 142 (179)
.+.+...+++..+..+-..++|++|++..- +--......+++.+++++||+.+..+++++.+++.|++.-
T Consensus 31 ~~~il~~v~~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~L 101 (106)
T COG2076 31 WPSILTIVGYGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIGL 101 (106)
T ss_pred chHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHh
Confidence 344555667888888999999999998754 4444567788889999999999999999999999998654
No 54
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=96.61 E-value=0.0021 Score=50.32 Aligned_cols=78 Identities=23% Similarity=0.100 Sum_probs=60.3
Q ss_pred chhhHHHHHhHHHHHHHHHHHHHHhccccChhhhhHHhHhhhhheeeeecCc---------------------------c
Q 042552 96 NSVGFYQMTKLAIIPFTVLLETLFLKKQFSQKIKFSLFLLLVGVGIASVTDL---------------------------Q 148 (179)
Q Consensus 96 ~sv~~~~i~k~~~~~~~~~~~~~~~~~~~s~~~~~sl~li~~Gv~~~~~~d~---------------------------~ 148 (179)
+++|.+..+|+..+.++++.+...++||++..++++..+++.|+.....+|. .
T Consensus 2 isvPa~~~~~s~~l~~v~l~~~~~~~~~~~~~~i~~~~l~~~g~l~~~ls~~q~~al~~l~~~~~~~~~~~~~~~~~~~g 81 (222)
T TIGR00803 2 LSVPIHIIFKQNNLVLIALGNLLAAGKQVTQLKILSTALMTLGSLVASLGDDQWFSLKLLKLGVAIVQMVQSSAKTLMFG 81 (222)
T ss_pred ccccchHHHHhcchHHHHHhcccccceeeehHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHhHeeeecCCCCccccccc
Confidence 5889999999999999999999999999999999999999999875433322 1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHcc
Q 042552 149 LNMVGTILSLLAIVTTCVGQIVSFF 173 (179)
Q Consensus 149 ~~~~G~~~~l~s~~~~a~~~i~~~~ 173 (179)
..+.|....+.+..+.++-.++.|+
T Consensus 82 ~~~~g~~~~l~a~~~~~~~~~y~e~ 106 (222)
T TIGR00803 82 NPVVGLSAVLSALLSSGFAGVYFEK 106 (222)
T ss_pred cHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 2456777777777776665555543
No 55
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=96.60 E-value=0.096 Score=41.62 Aligned_cols=74 Identities=20% Similarity=0.281 Sum_probs=60.0
Q ss_pred chhHHHHHHHHHH-HHhhhcccccccchhhHHHHHhHHHHHHHHHHHHHHhccccChhhhhHHhHhhhhheeeee
Q 042552 71 DVKTVMLFGILNG-ISIGLLNLSLGFNSVGFYQMTKLAIIPFTVLLETLFLKKQFSQKIKFSLFLLLVGVGIASV 144 (179)
Q Consensus 71 ~~~~~lp~~l~~~-~~~~~~n~sl~~~sv~~~~i~k~~~~~~~~~~~~~~~~~~~s~~~~~sl~li~~Gv~~~~~ 144 (179)
++......++... ....+-+.+++..+.+.........|+...+.++.+++|+++..++.+..+++.|+.+...
T Consensus 213 ~~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~~~~~G~~li~~g~~l~~~ 287 (292)
T COG0697 213 AWLLLLYLGVFSTGLAYLLWYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPAQLLGAALVVLGVLLASL 287 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhc
Confidence 3445556666544 4778888999999999999998777777777799999999999999999999999877544
No 56
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=96.58 E-value=0.011 Score=41.68 Aligned_cols=67 Identities=15% Similarity=0.003 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHhhhcccccccchhhHHHHHh-HHHHHHHHHHHHHHhccccChhhhhHHhHhhhhhee
Q 042552 75 VMLFGILNGISIGLLNLSLGFNSVGFYQMTK-LAIIPFTVLLETLFLKKQFSQKIKFSLFLLLVGVGI 141 (179)
Q Consensus 75 ~lp~~l~~~~~~~~~n~sl~~~sv~~~~i~k-~~~~~~~~~~~~~~~~~~~s~~~~~sl~li~~Gv~~ 141 (179)
.....+.+..+..+-..++|+.|++..--.= ......+.+.+.+++||+.+..++.++.+++.|++.
T Consensus 38 ~~~~~~~~~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~ 105 (109)
T PRK10650 38 GILSLAAVLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVM 105 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHH
Confidence 3344556777888999999999998765444 346677888899999999999999999999999865
No 57
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=96.47 E-value=0.05 Score=44.70 Aligned_cols=133 Identities=14% Similarity=0.094 Sum_probs=89.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHHHHHHHHHHHHH-HH--cCCC-cc------CccchhHHHHHHH
Q 042552 11 VIGALFLSVASSVSIVICNKALMSNLGFPFATTLTSWHLMVTFCTLHAA-QR--LNFF-ES------KAVDVKTVMLFGI 80 (179)
Q Consensus 11 ~~~~~~~~~~~S~~~~~~NK~ll~~~~f~~p~~lt~~q~~~~~~~~~i~-~~--~~~~-~~------~~~~~~~~lp~~l 80 (179)
....+..+..+.......+|.++++++-+ |.-+.+...+.+.+...+. .. .+.. +. .+.....++..++
T Consensus 155 G~~ll~~sl~~~a~~~~~qe~~~~~~~~~-~~~~mfy~n~~~~~~~~~~~~~l~~~~~~~~~~f~~~~p~~~~~l~~~s~ 233 (303)
T PF08449_consen 155 GIILLLLSLLLDAFTGVYQEKLFKKYGKS-PWELMFYTNLFSLPFLLILLFLLPTGEFRSAIRFISAHPSVLLYLLLFSL 233 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhHHHHHHHHHHHH
Confidence 45677888888888889999999988876 6666666555555554432 22 1111 10 0112344555556
Q ss_pred HHHHHhhhcccccccchhhHHHHHhHHHHHHHHHHHHHHhccccChhhhhHHhHhhhhheeeee
Q 042552 81 LNGISIGLLNLSLGFNSVGFYQMTKLAIIPFTVLLETLFLKKQFSQKIKFSLFLLLVGVGIASV 144 (179)
Q Consensus 81 ~~~~~~~~~n~sl~~~sv~~~~i~k~~~~~~~~~~~~~~~~~~~s~~~~~sl~li~~Gv~~~~~ 144 (179)
+......+-+...+..+.-...+....--+++++++.++++++++...+.++.++..|..+...
T Consensus 234 ~~~~g~~~i~~~~~~~~al~~t~v~t~Rk~~sillS~~~f~~~~~~~~~~G~~lv~~g~~~~~~ 297 (303)
T PF08449_consen 234 TGALGQFFIFYLIKKFSALTTTIVTTLRKFLSILLSVIIFGHPLSPLQWIGIVLVFAGIFLYSY 297 (303)
T ss_pred HHHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHhcCCcCChHHHHHHHHhHHHHHHHHH
Confidence 5555555555555655555555555566788899999999999999999999999999876443
No 58
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=96.28 E-value=0.086 Score=44.27 Aligned_cols=60 Identities=17% Similarity=0.409 Sum_probs=48.8
Q ss_pred hcccccccchhhHHHHHhHHHHHHHHHHHHHHhccccChhhhhHHhHhhhhheeeeecCc
Q 042552 88 LLNLSLGFNSVGFYQMTKLAIIPFTVLLETLFLKKQFSQKIKFSLFLLLVGVGIASVTDL 147 (179)
Q Consensus 88 ~~n~sl~~~sv~~~~i~k~~~~~~~~~~~~~~~~~~~s~~~~~sl~li~~Gv~~~~~~d~ 147 (179)
+....+++.|..+..+.=.++.|..++++.+++|+++++.-+++.+++++|.++....+.
T Consensus 249 l~p~~l~~ssAt~~nLsLLTsd~~ali~~i~~f~~~~~~ly~~af~lIiiG~vvy~~~~~ 308 (334)
T PF06027_consen 249 LVPIVLRMSSATFFNLSLLTSDFYALIIDIFFFGYKFSWLYILAFALIIIGFVVYNLAES 308 (334)
T ss_pred HHHHHHHhCccceeehHHHHhhHHHHHHHHHhcCccccHHHHHHHHHHHHHhheEEccCC
Confidence 335566666666666666678899999999999999999999999999999999877554
No 59
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=96.07 E-value=0.035 Score=37.79 Aligned_cols=56 Identities=18% Similarity=0.122 Sum_probs=33.3
Q ss_pred HHHHHHhhhcccccccchhhHH-HHHhHHHHHHHHHHHHHHhccccChhhhhHHhHh
Q 042552 80 ILNGISIGLLNLSLGFNSVGFY-QMTKLAIIPFTVLLETLFLKKQFSQKIKFSLFLL 135 (179)
Q Consensus 80 l~~~~~~~~~n~sl~~~sv~~~-~i~k~~~~~~~~~~~~~~~~~~~s~~~~~sl~li 135 (179)
.++..+..+-..++++.|++.. -+........+.+.+.+++||+.|..++.++.++
T Consensus 37 ~~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~~~gi~lI 93 (93)
T PF00893_consen 37 VGYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSKWLGIGLI 93 (93)
T ss_dssp HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------HHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHhheeeC
Confidence 3678888899999999999876 4556677888899999999999999999988764
No 60
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=95.98 E-value=0.057 Score=44.63 Aligned_cols=70 Identities=17% Similarity=0.277 Sum_probs=61.2
Q ss_pred HHHHHHH-HHHHHhhhcccccccchhhHHHHHhHHHHHHHHHHHHHHhccccChhhhhHHhHhhhhheeee
Q 042552 74 TVMLFGI-LNGISIGLLNLSLGFNSVGFYQMTKLAIIPFTVLLETLFLKKQFSQKIKFSLFLLLVGVGIAS 143 (179)
Q Consensus 74 ~~lp~~l-~~~~~~~~~n~sl~~~sv~~~~i~k~~~~~~~~~~~~~~~~~~~s~~~~~sl~li~~Gv~~~~ 143 (179)
+.+..|+ .+..+-.++..|+.+.|.+..|-+-+...++.++++..++|||.+++.+.+..+++.|..+..
T Consensus 51 ~~W~~G~~~~~~g~~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~liv 121 (300)
T PF05653_consen 51 PLWWIGLLLMVLGEILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVLIV 121 (300)
T ss_pred HHHHHHHHHHhcchHHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHhHHhhHHHHHhhheeeE
Confidence 4555565 466677889999999999999999999999999999999999999999999999999987643
No 61
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=95.69 E-value=0.27 Score=40.31 Aligned_cols=150 Identities=20% Similarity=0.193 Sum_probs=85.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHHHHHHHHHHHHH----HHcCCCccCccchhHHHHH---HHHH
Q 042552 10 GVIGALFLSVASSVSIVICNKALMSNLGFPFATTLTSWHLMVTFCTLHAA----QRLNFFESKAVDVKTVMLF---GILN 82 (179)
Q Consensus 10 ~~~~~~~~~~~~S~~~~~~NK~ll~~~~f~~p~~lt~~q~~~~~~~~~i~----~~~~~~~~~~~~~~~~lp~---~l~~ 82 (179)
..+.+++.|..-...= ++-|.+- +.| +.-+...+.+.+..+..+. |+.+....-..+.|+++-+ ++.-
T Consensus 8 Gil~~l~Ay~lwG~lp-~y~kll~---~~~-~~eIlahRviwS~~~~l~ll~~~r~~~~~~~~~~~p~~~~~~~l~a~li 82 (293)
T COG2962 8 GILLALLAYLLWGLLP-LYFKLLE---PLP-ATEILAHRVIWSFPFMLALLFLLRQWRELKQLLKQPKTLLMLALTALLI 82 (293)
T ss_pred hhHHHHHHHHHHHHHH-HHHHHHc---cCC-HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhCcHHHHHHHHHHHHH
Confidence 4566666666666544 5667664 345 6667777777777665443 2222111101112222221 2222
Q ss_pred HHHhhhcccccccc---hhhHHHHHhHHHHHHHHHHHHHHhccccChhhhhHHhHhhhhheeeeecCccchHHHHHHHHH
Q 042552 83 GISIGLLNLSLGFN---SVGFYQMTKLAIIPFTVLLETLFLKKQFSQKIKFSLFLLLVGVGIASVTDLQLNMVGTILSLL 159 (179)
Q Consensus 83 ~~~~~~~n~sl~~~---sv~~~~i~k~~~~~~~~~~~~~~~~~~~s~~~~~sl~li~~Gv~~~~~~d~~~~~~G~~~~l~ 159 (179)
..+-..=-++..+. +.|+---+ -|.+.++++.+++|||.|+.++.++++..+||..-.....++++....++
T Consensus 83 ~~nW~lfiWAvn~g~~leaSLGY~I---nPL~~VllG~lflkErls~~Q~iAV~lA~~GV~~~~~~~g~lpwval~la-- 157 (293)
T COG2962 83 GLNWWLFIWAVNNGHVLEASLGYFI---NPLVNVLLGRLFLKERLSRLQWIAVGLAAAGVLIQTWLLGSLPWVALALA-- 157 (293)
T ss_pred HHHHHHhheecCCCchhHHHhHHHH---HHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHH--
Confidence 22222222232221 22222222 36677888999999999999999999999999887777777888765554
Q ss_pred HHHHHHHHHHHH
Q 042552 160 AIVTTCVGQIVS 171 (179)
Q Consensus 160 s~~~~a~~~i~~ 171 (179)
+..++|....
T Consensus 158 --~sf~~Ygl~R 167 (293)
T COG2962 158 --LSFGLYGLLR 167 (293)
T ss_pred --HHHHHHHHHH
Confidence 3455555443
No 62
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=95.44 E-value=0.72 Score=35.92 Aligned_cols=132 Identities=9% Similarity=-0.007 Sum_probs=82.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHHHHHHHHHH-HHH---HHcCCCccCc---cchhHHHHHHH
Q 042552 8 QLGVIGALFLSVASSVSIVICNKALMSNLGFPFATTLTSWHLMVTFCTL-HAA---QRLNFFESKA---VDVKTVMLFGI 80 (179)
Q Consensus 8 ~~~~~~~~~~~~~~S~~~~~~NK~ll~~~~f~~p~~lt~~q~~~~~~~~-~i~---~~~~~~~~~~---~~~~~~lp~~l 80 (179)
....+..++....++......+|+.+++++- ....-..|+-.-.... ... ...+..+... ......+.+.+
T Consensus 83 ~~~g~~~~l~a~~~~~~~~~y~e~~~k~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (222)
T TIGR00803 83 PVVGLSAVLSALLSSGFAGVYFEKILKDGDT--MFWSRNLQLPLFGLFSTFSVLLWSDGTLISNFGFFIGYPTAVWIVGL 160 (222)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHcccCCCC--chHHHHHHHHHHHHHHHHHHHhhcccchhhccCcccCCchHHHHHHH
Confidence 3444555666666666777888888775422 1122222221111111 111 1111111111 01123344445
Q ss_pred HHHHHhhhcccccccchhhHHHHHhHHHHHHHHHHHHHHhccccChhhhhHHhHhhhhhee
Q 042552 81 LNGISIGLLNLSLGFNSVGFYQMTKLAIIPFTVLLETLFLKKQFSQKIKFSLFLLLVGVGI 141 (179)
Q Consensus 81 ~~~~~~~~~n~sl~~~sv~~~~i~k~~~~~~~~~~~~~~~~~~~s~~~~~sl~li~~Gv~~ 141 (179)
..+..-.+-+..++|.+.....+.-...+.++.+++.++++++++...+.+..++..|+.+
T Consensus 161 ~~a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~l 221 (222)
T TIGR00803 161 LNVGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLATFL 221 (222)
T ss_pred HHHhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeEe
Confidence 5666667888999999888888888888999999999999999999999999999998764
No 63
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function. Many members are annotated as potential transmembrane proteins.
Probab=95.02 E-value=0.058 Score=38.19 Aligned_cols=70 Identities=21% Similarity=0.222 Sum_probs=53.2
Q ss_pred hhHHHHHHHHHHHHhhhcccccccchhhHHHHH-hHHHHHHHHHHHHHHhccccChhhhhHHhHhhhhheee
Q 042552 72 VKTVMLFGILNGISIGLLNLSLGFNSVGFYQMT-KLAIIPFTVLLETLFLKKQFSQKIKFSLFLLLVGVGIA 142 (179)
Q Consensus 72 ~~~~lp~~l~~~~~~~~~n~sl~~~sv~~~~i~-k~~~~~~~~~~~~~~~~~~~s~~~~~sl~li~~Gv~~~ 142 (179)
++..+|+.+=.++++.+ ...+...++|...-+ .+.+-.++++.++++.+|..+++++.++.+++.|+.++
T Consensus 42 ~~y~ipf~lNq~GSv~f-~~~L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~~~~G~~Li~~Gv~Lc 112 (113)
T PF10639_consen 42 PKYIIPFLLNQSGSVLF-FLLLGSADLSLAVPIANSLAFVFTALTGWLLGEEVISRRTWLGMALILAGVALC 112 (113)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHhcCCceeeehHHhHHHHHHHHHHHHHhcCcccchhHHHHHHHHHcCeeee
Confidence 45677887777776633 445556666665555 46677888988988888899999999999999999875
No 64
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=94.39 E-value=0.25 Score=40.23 Aligned_cols=99 Identities=18% Similarity=0.125 Sum_probs=73.1
Q ss_pred HHHHHHHHHHHHhhhcccccccchhhHHHH-HhHHHHHHHHHHHHHHhccccChhhh----hHHhHhhhhheeeeecCcc
Q 042552 74 TVMLFGILNGISIGLLNLSLGFNSVGFYQM-TKLAIIPFTVLLETLFLKKQFSQKIK----FSLFLLLVGVGIASVTDLQ 148 (179)
Q Consensus 74 ~~lp~~l~~~~~~~~~n~sl~~~sv~~~~i-~k~~~~~~~~~~~~~~~~~~~s~~~~----~sl~li~~Gv~~~~~~d~~ 148 (179)
--+.-+++.+..-.....|+++..+|-..= .-......+.+.+++++||..+...+ .+++++++|+.+++..|.+
T Consensus 47 ~~~lsG~~W~iGq~~qf~s~~~~GVS~tmPiStg~QLvg~sl~gv~~fgEW~~~~~~~~G~~Al~liiiGv~lts~~~~~ 126 (269)
T PF06800_consen 47 VAFLSGAFWAIGQIGQFKSFKKIGVSKTMPISTGLQLVGTSLIGVLFFGEWTTTTQKIIGFLALVLIIIGVILTSYQDKK 126 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcceeeeccchhHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHHHhcccccc
Confidence 345556778888888888888875543221 12234556778889999998776665 4889999999999886643
Q ss_pred c--------hHHHHHHHHHHHHHHHHHHHHHc
Q 042552 149 L--------NMVGTILSLLAIVTTCVGQIVSF 172 (179)
Q Consensus 149 ~--------~~~G~~~~l~s~~~~a~~~i~~~ 172 (179)
- ...|+...+.+.+.+..|.+..+
T Consensus 127 ~~~~~~~~~~~kgi~~Ll~stigy~~Y~~~~~ 158 (269)
T PF06800_consen 127 SDKSSSKSNMKKGILALLISTIGYWIYSVIPK 158 (269)
T ss_pred ccccccccchhhHHHHHHHHHHHHHHHHHHHH
Confidence 2 25699999999999999988754
No 65
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=94.21 E-value=1.4 Score=35.92 Aligned_cols=101 Identities=14% Similarity=0.024 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCccCccchhHHHHHHHHHHHHhhhcccccccchhhHHHHHhHHHHHHHHHHHHHHh
Q 042552 41 ATTLTSWHLMVTFCTLHAAQRLNFFESKAVDVKTVMLFGILNGISIGLLNLSLGFNSVGFYQMTKLAIIPFTVLLETLFL 120 (179)
Q Consensus 41 p~~lt~~q~~~~~~~~~i~~~~~~~~~~~~~~~~~lp~~l~~~~~~~~~n~sl~~~sv~~~~i~k~~~~~~~~~~~~~~~ 120 (179)
|....+=|..--.+...+.......+.++.+..+-+.-++.++..-.+...|-+.+-++..-.+..+.+.+..+.+.+++
T Consensus 164 ~~~~~lPqaiGm~i~a~i~~~~~~~~~~~k~~~~nil~G~~w~ignl~~~is~~~~G~a~af~lSQ~~vvIStlgGI~il 243 (269)
T PF06800_consen 164 GWSAFLPQAIGMLIGAFIFNLFSKKPFFEKKSWKNILTGLIWGIGNLFYLISAQKNGVATAFTLSQLGVVISTLGGIFIL 243 (269)
T ss_pred hhHhHHHHHHHHHHHHHHHhhcccccccccchHHhhHHHHHHHHHHHHHHHhHHhccchhhhhHHhHHHHHHHhhhheEE
Confidence 55555555433333333332222112222223344555666666666667777777666666666677777777889999
Q ss_pred ccccChhhh----hHHhHhhhhhee
Q 042552 121 KKQFSQKIK----FSLFLLLVGVGI 141 (179)
Q Consensus 121 ~~~~s~~~~----~sl~li~~Gv~~ 141 (179)
||+-++++. .++++++.|.++
T Consensus 244 ~E~Kt~ke~~~~~~G~~Liv~G~il 268 (269)
T PF06800_consen 244 KEKKTKKEMIYTLIGLILIVIGAIL 268 (269)
T ss_pred EecCchhhHHHHHHHHHHHHHhhhc
Confidence 998777755 456666666544
No 66
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=90.63 E-value=7.2 Score=32.12 Aligned_cols=71 Identities=11% Similarity=0.220 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHHhhhcccccccchhhHHHHHhHHHHHHHHHHHHHHhccccChhhhhHHhHhhhhheeeee
Q 042552 74 TVMLFGILNGISIGLLNLSLGFNSVGFYQMTKLAIIPFTVLLETLFLKKQFSQKIKFSLFLLLVGVGIASV 144 (179)
Q Consensus 74 ~~lp~~l~~~~~~~~~n~sl~~~sv~~~~i~k~~~~~~~~~~~~~~~~~~~s~~~~~sl~li~~Gv~~~~~ 144 (179)
-+...|...+.-..+-..+-+..|.+..-.+....|....+++.+++||+++..+..+-+++-.|.++.+.
T Consensus 213 LLv~aG~vTavpL~lf~~aa~~lpls~~G~lqYi~Ptl~fllav~i~~E~~~~~~~~~F~~IW~aL~l~~~ 283 (293)
T COG2962 213 LLVLAGLVTAVPLLLFAAAAKRLPLSTLGFLQYIEPTLMFLLAVLIFGEPFDSDQLVTFAFIWLALALFSI 283 (293)
T ss_pred HHHHhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 34455677888888888899999999999999998888888899999999999999999988888776644
No 67
>KOG2922 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.47 E-value=0.47 Score=39.50 Aligned_cols=71 Identities=13% Similarity=0.118 Sum_probs=61.5
Q ss_pred HHHHHHH-HHHHHhhhcccccccchhhHHHHHhHHHHHHHHHHHHHHhccccChhhhhHHhHhhhhheeeee
Q 042552 74 TVMLFGI-LNGISIGLLNLSLGFNSVGFYQMTKLAIIPFTVLLETLFLKKQFSQKIKFSLFLLLVGVGIASV 144 (179)
Q Consensus 74 ~~lp~~l-~~~~~~~~~n~sl~~~sv~~~~i~k~~~~~~~~~~~~~~~~~~~s~~~~~sl~li~~Gv~~~~~ 144 (179)
+++..|+ .+...=..+..|+.+.|-+..+=+-+.+.+..++++.++++||.++...++..+.++|..+...
T Consensus 65 ~~Ww~G~ltm~vGei~NFaAYaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~g~lGc~l~v~Gst~iV~ 136 (335)
T KOG2922|consen 65 PLWWAGMLTMIVGEIANFAAYAFAPASLVTPLGALSVIISAILASFFLKEKLNLLGILGCVLCVVGSTTIVI 136 (335)
T ss_pred HHHHHHHHHHHHHhHhhHHHHhhchHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhhheeEEecccEEEEE
Confidence 4555664 4666778899999999999999999999999999999999999999999999999999766544
No 68
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=88.60 E-value=0.78 Score=37.13 Aligned_cols=70 Identities=7% Similarity=0.033 Sum_probs=56.0
Q ss_pred hHHHHHHHHHHHH-----hhhcccccccchhhHHHHHhHHHHHHHHHHHHHHhccccChhhhhHHhHhhhhheee
Q 042552 73 KTVMLFGILNGIS-----IGLLNLSLGFNSVGFYQMTKLAIIPFTVLLETLFLKKQFSQKIKFSLFLLLVGVGIA 142 (179)
Q Consensus 73 ~~~lp~~l~~~~~-----~~~~n~sl~~~sv~~~~i~k~~~~~~~~~~~~~~~~~~~s~~~~~sl~li~~Gv~~~ 142 (179)
..+++.++.-..- -.+...+++..|-+.+.++-+..|.+-.+.+..+++|+.|..+++++..++.+.+=.
T Consensus 206 p~ll~laLgvavlSSalPYsLEmiAL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~ls~~qwlaI~~ViaAsaG~ 280 (292)
T COG5006 206 PSLLPLALGVAVLSSALPYSLEMIALRRLPARTFGTLLSLEPALAALSGLIFLGETLTLIQWLAIAAVIAASAGS 280 (292)
T ss_pred hHHHHHHHHHHHHhcccchHHHHHHHhhCChhHHHHHHHhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcc
Confidence 3566666543332 256778899999999999999998888888999999999999999999998876533
No 69
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=82.59 E-value=16 Score=26.52 Aligned_cols=113 Identities=17% Similarity=0.109 Sum_probs=73.2
Q ss_pred HHHHHHhhccCCCchHHHHHHHHHHHHHHHHHHHH---Hc-CCCccCccchhHHHHHHHHHHHHhhhcccccccchhhHH
Q 042552 26 VICNKALMSNLGFPFATTLTSWHLMVTFCTLHAAQ---RL-NFFESKAVDVKTVMLFGILNGISIGLLNLSLGFNSVGFY 101 (179)
Q Consensus 26 ~~~NK~ll~~~~f~~p~~lt~~q~~~~~~~~~i~~---~~-~~~~~~~~~~~~~lp~~l~~~~~~~~~n~sl~~~sv~~~ 101 (179)
.-+|-.+-+..+ .|+.=++.-+....+.+.+.. +. +..+.++.|++.++ -+++-+..+.+++.+.....++..
T Consensus 17 ~~~N~~L~~~~g--s~~~as~i~~~~G~i~~~i~~~~~~~~~~~~~~~~p~w~~l-GG~lG~~~V~~~~~~vp~lG~~~~ 93 (138)
T PF04657_consen 17 AAFNGQLGKALG--SPLVASFISFGVGFILLLIILLITGRPSLASLSSVPWWAYL-GGLLGVFFVLSNIILVPRLGAALT 93 (138)
T ss_pred HHHHHHHHHHhC--ccHHHHHHHHHHHHHHHHHHHHHhcccccchhccCChHHhc-cHHHHHHHHHHHHHHhhhhhHHHH
Confidence 446666655444 366667777777766655432 11 11112334444444 677778888888888888877777
Q ss_pred HHHhHH-HHHHHHHHHHH----HhccccChhhhhHHhHhhhhhee
Q 042552 102 QMTKLA-IIPFTVLLETL----FLKKQFSQKIKFSLFLLLVGVGI 141 (179)
Q Consensus 102 ~i~k~~-~~~~~~~~~~~----~~~~~~s~~~~~sl~li~~Gv~~ 141 (179)
+.+--. .....++++.+ .-+++++.++.+++.+++.|+.+
T Consensus 94 ~~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~r~lG~~l~i~Gv~L 138 (138)
T PF04657_consen 94 TILIVAGQLIASLLIDHFGLFGAPKRPFSLRRILGLALMIAGVIL 138 (138)
T ss_pred HHHHHHHHHHHHHHHHHccccCCCCCCCCHHHHHHHHHHHHHHhC
Confidence 766644 44445666765 24578999999999999999853
No 70
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=82.54 E-value=23 Score=28.27 Aligned_cols=123 Identities=14% Similarity=-0.002 Sum_probs=77.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHHHHHHHHHHHH-HHHc-CCCccCcc------chhHHHHHH
Q 042552 8 QLGVIGALFLSVASSVSIVICNKALMSNLGFPFATTLTSWHLMVTFCTLHA-AQRL-NFFESKAV------DVKTVMLFG 79 (179)
Q Consensus 8 ~~~~~~~~~~~~~~S~~~~~~NK~ll~~~~f~~p~~lt~~q~~~~~~~~~i-~~~~-~~~~~~~~------~~~~~lp~~ 79 (179)
.......++.-..+|..-..++++++.+.+ .|.-.--.|+-...+.... .... +..+.++. +.. .+.+.
T Consensus 112 ~~~G~~~vl~~~~~S~~agVy~E~~lK~~~--~s~~~~N~qL~~~gi~~~~~~~~~~~~~~~~~~g~f~G~~~~-~~~~i 188 (244)
T PF04142_consen 112 PLLGLLAVLAAAFLSGFAGVYFEKLLKRSN--VSLWIQNMQLYLFGILFNLLALLLSDGSAISESGFFHGYSWW-VWIVI 188 (244)
T ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHhcccc--hhHHHHHHHHHHHHHHHHHHHHhcccccccccCCchhhcchH-HHHHH
Confidence 445566777788888888899999998765 3666666665554443332 2211 11111111 122 23333
Q ss_pred HHHHHHhhhcccccccchhhHHHHHhHHHHHHHHHHHHHHhccccChhhhhHHh
Q 042552 80 ILNGISIGLLNLSLGFNSVGFYQMTKLAIIPFTVLLETLFLKKQFSQKIKFSLF 133 (179)
Q Consensus 80 l~~~~~~~~~n~sl~~~sv~~~~i~k~~~~~~~~~~~~~~~~~~~s~~~~~sl~ 133 (179)
+.++.+=..-..-+||.+-=.-...-+.+..++.+++..+++.++|....++..
T Consensus 189 ~~~a~gGllva~v~KyadnI~K~fa~a~siv~t~~~s~~lf~~~~s~~f~lg~~ 242 (244)
T PF04142_consen 189 FLQAIGGLLVAFVLKYADNIVKGFATAVSIVLTAVLSVLLFGFPPSLSFLLGAA 242 (244)
T ss_pred HHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHhhhee
Confidence 455555556667788887556666666778888888999999999888776543
No 71
>PRK13499 rhamnose-proton symporter; Provisional
Probab=81.49 E-value=7.2 Score=33.01 Aligned_cols=96 Identities=17% Similarity=0.196 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHhhhcccccccchhhHHHHHhH-HHHHHHHHHHHHHhcccc---C----hhhhhHHhHhhhhheeeee--
Q 042552 75 VMLFGILNGISIGLLNLSLGFNSVGFYQMTKL-AIIPFTVLLETLFLKKQF---S----QKIKFSLFLLLVGVGIASV-- 144 (179)
Q Consensus 75 ~lp~~l~~~~~~~~~n~sl~~~sv~~~~i~k~-~~~~~~~~~~~~~~~~~~---s----~~~~~sl~li~~Gv~~~~~-- 144 (179)
-+.-+++.+..-.....|.++.-+|..+-+-. .+.....++..++++|-. + .....+++++++|+++.+.
T Consensus 76 ~~l~G~~W~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~liliGi~l~s~Ag 155 (345)
T PRK13499 76 VFLFGALWGIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALIGVAIVGRAG 155 (345)
T ss_pred HHHHHHHHHhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHHhh
Confidence 34456667777777778888886666554332 234445566666777543 2 2345788899999999877
Q ss_pred --cCc---------cchHHHHHHHHHHHHHHHHHHHH
Q 042552 145 --TDL---------QLNMVGTILSLLAIVTTCVGQIV 170 (179)
Q Consensus 145 --~d~---------~~~~~G~~~~l~s~~~~a~~~i~ 170 (179)
.|. .....|+..++++.+..++|+..
T Consensus 156 ~~k~~~~~~~~~~~~~~~KGi~ialisgi~~~~f~~~ 192 (345)
T PRK13499 156 QLKERKMGIKKAEEFNLKKGLILAVMSGIFSACFSFA 192 (345)
T ss_pred hhcccccccccccccchHhHHHHHHHHHHHHHHHHHH
Confidence 443 12368999999999999999843
No 72
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=77.54 E-value=19 Score=28.88 Aligned_cols=124 Identities=12% Similarity=0.075 Sum_probs=75.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHHHHHHHHHHHHHHH-cCCCccC-------ccchhHHHHHHHHHHHH
Q 042552 14 ALFLSVASSVSIVICNKALMSNLGFPFATTLTSWHLMVTFCTLHAAQR-LNFFESK-------AVDVKTVMLFGILNGIS 85 (179)
Q Consensus 14 ~~~~~~~~S~~~~~~NK~ll~~~~f~~p~~lt~~q~~~~~~~~~i~~~-~~~~~~~-------~~~~~~~lp~~l~~~~~ 85 (179)
|+..++.+|...++.-|.-.+-.+|+ -.--.+..-+.+.-.+..+.. ..--++. ......++.-|++-.+.
T Consensus 159 Wm~~NclssaafVL~mrkri~ltNf~-d~dtmfYnNllslPiL~~~s~~~edws~~n~annl~~d~l~am~ISgl~svgi 237 (309)
T COG5070 159 WMFTNCLSSAAFVLIMRKRIKLTNFK-DFDTMFYNNLLSLPILLSFSFLFEDWSPGNLANNLSVDSLMAMFISGLCSVGI 237 (309)
T ss_pred EEehhhHhHHHHHHHHHHhhcccccc-hhhHHHHhhhHHHHHHHHHHHHhccCCcchhhcCCChHHHHHHHHHHHHHhhh
Confidence 45567777777777776666544443 222233444444433333321 1111221 11123455666777777
Q ss_pred hhhcccccccchhhHHHHHhHHHHHHHHHHHHHHhccccChhhhhHHhHhhhh
Q 042552 86 IGLLNLSLGFNSVGFYQMTKLAIIPFTVLLETLFLKKQFSQKIKFSLFLLLVG 138 (179)
Q Consensus 86 ~~~~n~sl~~~sv~~~~i~k~~~~~~~~~~~~~~~~~~~s~~~~~sl~li~~G 138 (179)
.+++-++++-.|...|.|.-+.--....+.+.+++++..+...+.++.+-.+.
T Consensus 238 Sy~saWcvrVtSSTtySMvGALNKlp~alaGlvffdap~nf~si~sillGfls 290 (309)
T COG5070 238 SYCSAWCVRVTSSTTYSMVGALNKLPIALAGLVFFDAPVNFLSIFSILLGFLS 290 (309)
T ss_pred hhccceeEeehhhhHHHHHHHhhhChHHHhhhhhcCCchhHHHHHHHHHHHHH
Confidence 78899999999999999998886666666777888888877777776554433
No 73
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=72.09 E-value=18 Score=30.18 Aligned_cols=29 Identities=14% Similarity=0.189 Sum_probs=17.6
Q ss_pred ecCccchHHHHHHHHHHHHHHHHHHHHHc
Q 042552 144 VTDLQLNMVGTILSLLAIVTTCVGQIVSF 172 (179)
Q Consensus 144 ~~d~~~~~~G~~~~l~s~~~~a~~~i~~~ 172 (179)
.+|.++++.|++-.+++.+....|+....
T Consensus 275 ~~d~~~~~~n~~gll~~~~ggv~Y~~~~~ 303 (314)
T KOG1444|consen 275 FGDKPFTFLNVIGLLVGFFGGVLYSYATF 303 (314)
T ss_pred cCCceechhhhHHHHHHhhhhhHHhhhhh
Confidence 35666666666666666666666666553
No 74
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=67.45 E-value=71 Score=27.57 Aligned_cols=124 Identities=14% Similarity=0.091 Sum_probs=70.2
Q ss_pred HHHHHHHhhcc-CCCchHHHHHHHHHH---HHHHHHHHHHHcC--CCccCcc-chhHHHHHHH-HHHHHhhhcccccccc
Q 042552 25 IVICNKALMSN-LGFPFATTLTSWHLM---VTFCTLHAAQRLN--FFESKAV-DVKTVMLFGI-LNGISIGLLNLSLGFN 96 (179)
Q Consensus 25 ~~~~NK~ll~~-~~f~~p~~lt~~q~~---~~~~~~~i~~~~~--~~~~~~~-~~~~~lp~~l-~~~~~~~~~n~sl~~~ 96 (179)
++++-|.+=++ .+.+-|.++.+.... .-+-.+.+...++ .++.|+. ....++..++ ....+=++--.+.-..
T Consensus 263 ~vllk~~~~~eg~rvdi~lffGfvGLfnllllwP~l~iL~~~~~e~F~lP~~~q~~~vv~~~ligtvvSDylW~~a~~lT 342 (416)
T KOG2765|consen 263 TVLLKRKIGDEGERVDIQLFFGFVGLFNLLLLWPPLIILDFFGEERFELPSSTQFSLVVFNNLIGTVVSDYLWAKAVLLT 342 (416)
T ss_pred HHHHHhhcccccccccHHHHHHHHHHHHHHHHhHHHHHHHHhccCcccCCCCceeEeeeHhhHHHHHHHHHHHHHHHHhc
Confidence 34445555444 366777777665532 2222233333332 2222211 1111222221 1222223333444444
Q ss_pred hhhHHHHHhHHHHHHHHHHHHHHhccccChhhhhHHhHhhhhheeeeecCcc
Q 042552 97 SVGFYQMTKLAIIPFTVLLETLFLKKQFSQKIKFSLFLLLVGVGIASVTDLQ 148 (179)
Q Consensus 97 sv~~~~i~k~~~~~~~~~~~~~~~~~~~s~~~~~sl~li~~Gv~~~~~~d~~ 148 (179)
|.-..++.-+.++|..++.+.++-++++|...+++.+++..|.+.+.+.+..
T Consensus 343 s~Lv~TlgmSltIPLA~~aD~l~k~~~~S~~~iiGsi~Ifv~Fv~vn~~~~~ 394 (416)
T KOG2765|consen 343 SPLVVTLGMSLTIPLAMFADVLIKGKHPSALYIIGSIPIFVGFVIVNISSEN 394 (416)
T ss_pred cchhheeeeeEeeeHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhheeccccc
Confidence 4445555556788999999999999999999999999999998888775543
No 75
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=63.06 E-value=16 Score=30.51 Aligned_cols=45 Identities=13% Similarity=0.093 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhc--cCCCchHHHHHHHHHHHHHHHHH
Q 042552 12 IGALFLSVASSVSIVICNKALMS--NLGFPFATTLTSWHLMVTFCTLH 57 (179)
Q Consensus 12 ~~~~~~~~~~S~~~~~~NK~ll~--~~~f~~p~~lt~~q~~~~~~~~~ 57 (179)
......+......=.++-|.++. .++.+ ++.+...+--++...+.
T Consensus 165 ~i~a~~s~~~~al~~I~~~~ll~~~~~~~~-~~~ll~y~ap~s~~~Ll 211 (316)
T KOG1441|consen 165 FISAMISNLAFALRNILSKKLLTSKGESLN-SMNLLYYTAPISLIFLL 211 (316)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhccccccC-chHHHHHhhhHHHHHHh
Confidence 33344444444455566666664 45565 66666666666665555
No 76
>COG3949 Uncharacterized membrane protein [Function unknown]
Probab=55.28 E-value=39 Score=28.55 Aligned_cols=27 Identities=4% Similarity=0.034 Sum_probs=17.6
Q ss_pred cccchhhHHHHHhHHHHHHHHHHHHHH
Q 042552 93 LGFNSVGFYQMTKLAIIPFTVLLETLF 119 (179)
Q Consensus 93 l~~~sv~~~~i~k~~~~~~~~~~~~~~ 119 (179)
...-++|++++.|...|..-.+...++
T Consensus 240 v~~~dIP~l~i~~~~~~~i~lvm~vIi 266 (349)
T COG3949 240 VVNYDIPLLTIAKNFSPLIGLVMSVII 266 (349)
T ss_pred hhccCCcHHHHHHhccHHHHHHHHHHH
Confidence 456699999999987544333334333
No 77
>PF04342 DUF486: Protein of unknown function, DUF486; InterPro: IPR007437 This family contains several proteins of uncharacterised function.
Probab=54.25 E-value=54 Score=22.93 Aligned_cols=60 Identities=7% Similarity=0.094 Sum_probs=40.8
Q ss_pred HHHHhhhcccccccchhhHHHHHhHH-HHHHHHHHHHHHhccccChhhhhHHhHhhhhhee
Q 042552 82 NGISIGLLNLSLGFNSVGFYQMTKLA-IIPFTVLLETLFLKKQFSQKIKFSLFLLLVGVGI 141 (179)
Q Consensus 82 ~~~~~~~~n~sl~~~sv~~~~i~k~~-~~~~~~~~~~~~~~~~~s~~~~~sl~li~~Gv~~ 141 (179)
+++++-.+-.+.+.-|.+--.+++=. +..+.+.++.++.||+.++....+...+++++..
T Consensus 45 Y~l~VPANRiG~~~~s~~QLKi~QEvitL~vF~~Fsv~~l~E~l~~n~l~af~~i~~av~f 105 (108)
T PF04342_consen 45 YCLQVPANRIGYQTFSLAQLKIIQEVITLVVFAPFSVFYLGEPLKWNYLWAFLCILGAVYF 105 (108)
T ss_pred HHHhCcchhhhccccCHHHHHHHHHHHhhheeHHHHHHHhCCCccHHHHHHHHHHHHhhhe
Confidence 66677777777776554433334433 3334466788889999999999998888777643
No 78
>KOG4831 consensus Unnamed protein [Function unknown]
Probab=44.29 E-value=17 Score=25.49 Aligned_cols=70 Identities=13% Similarity=0.111 Sum_probs=46.9
Q ss_pred hhHHHHHHHHHHHHhhhcccccccchhhHHHHHhH-HHHHHHHHHHHHHhccccChhhhhHHhHhhhhheee
Q 042552 72 VKTVMLFGILNGISIGLLNLSLGFNSVGFYQMTKL-AIIPFTVLLETLFLKKQFSQKIKFSLFLLLVGVGIA 142 (179)
Q Consensus 72 ~~~~lp~~l~~~~~~~~~n~sl~~~sv~~~~i~k~-~~~~~~~~~~~~~~~~~~s~~~~~sl~li~~Gv~~~ 142 (179)
++.+.|+.+=++.+. +-..-++..|++...=.++ .+-.++.+.++.+..|....+..+...+++.|+.++
T Consensus 53 w~Y~iPFllNqcgSa-ly~~tLa~a~islavpv~nsltfafta~~G~~LGE~~~g~~a~lGt~liv~Gi~Lc 123 (125)
T KOG4831|consen 53 WEYLIPFLLNQCGSA-LYYLTLASAPISLAVPVTNSLTFAFTAIFGKALGEETQGGLALLGTSLIVFGIWLC 123 (125)
T ss_pred HHHHHHHHHHHhhHH-HHHHHHhcCCceeeeeecchhHHHHHHHHHHHhccccccceeehhhhHHhhhhhhe
Confidence 456788877666654 3344455555555444443 355667777777777788888889999999998664
No 79
>COG3296 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=43.25 E-value=1.3e+02 Score=21.92 Aligned_cols=66 Identities=20% Similarity=0.216 Sum_probs=42.3
Q ss_pred hhhHHHHHhHHHHHHHHHH-HHHHhccccChhhhhHHhHhhhhheeeeecCccchHHHHHHHHHHHH
Q 042552 97 SVGFYQMTKLAIIPFTVLL-ETLFLKKQFSQKIKFSLFLLLVGVGIASVTDLQLNMVGTILSLLAIV 162 (179)
Q Consensus 97 sv~~~~i~k~~~~~~~~~~-~~~~~~~~~s~~~~~sl~li~~Gv~~~~~~d~~~~~~G~~~~l~s~~ 162 (179)
|+-..++-|-..|.+-.-. +++=+.-..+...+++.+++.+|+.++.-........|++..+.+..
T Consensus 41 PlivW~~kK~~sp~vD~qGKe~lNFqIs~ti~~ivs~vLil~g~~la~t~~~~i~~ig~~l~li~il 107 (143)
T COG3296 41 PLIVWLLKKDSSPFVDAQGKEALNFQISYTIYSIVSFVLILAGVFLAATDISFIIIIGFFLTLIGIL 107 (143)
T ss_pred HHHHHHHHhccchhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHH
Confidence 7777778775555444433 34444455666667899999999987765555556666666444444
No 80
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=43.11 E-value=2.1e+02 Score=24.34 Aligned_cols=139 Identities=11% Similarity=0.038 Sum_probs=83.4
Q ss_pred CcccchHHHHHHHHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHHHHHHHHH-HHHHHHc---CCCccCc-cc-h-hHH
Q 042552 3 EMSSFQLGVIGALFLSVASSVSIVICNKALMSNLGFPFATTLTSWHLMVTFCT-LHAAQRL---NFFESKA-VD-V-KTV 75 (179)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~S~~~~~~NK~ll~~~~f~~p~~lt~~q~~~~~~~-~~i~~~~---~~~~~~~-~~-~-~~~ 75 (179)
+++....-...++...+.+|.-...+++.++.+-+ -+.-+-=.|+-+-.+. ..+.... +.....+ .+ + +..
T Consensus 176 ~~~~n~~~G~~avl~~c~~SgfAgvYfEkiLK~s~--~s~wi~NiqL~~~g~~f~~l~~~~~d~~~i~~~gff~G~s~~v 253 (345)
T KOG2234|consen 176 SSAQNPFLGLVAVLVACFLSGFAGVYFEKILKGSN--VSLWIRNIQLYFFGILFNLLTILLQDGEAINEYGFFYGYSSIV 253 (345)
T ss_pred CcccchhhhHHHHHHHHHHHHHHHHHHHHHHhcCC--chHHHHHHHHHHHHHHHHHHHHhhccccccccCCccccccHHH
Confidence 34555666677788888888888889999997543 2444444443332222 2221111 1111000 00 1 233
Q ss_pred HHHHHHHHHHhhhcccccccchhhHHHHHhHHHHHHHHHHHHHHhccccChhhhhHHhHhhhhheeee
Q 042552 76 MLFGILNGISIGLLNLSLGFNSVGFYQMTKLAIIPFTVLLETLFLKKQFSQKIKFSLFLLLVGVGIAS 143 (179)
Q Consensus 76 lp~~l~~~~~~~~~n~sl~~~sv~~~~i~k~~~~~~~~~~~~~~~~~~~s~~~~~sl~li~~Gv~~~~ 143 (179)
+.+.+.++..-.+-..-.+|.+-=+....-+....++.+.+..+++.++|..-.++..+++.-+.+..
T Consensus 254 w~vVl~~a~gGLlvs~v~KyADnIlK~f~~s~aiilt~v~S~~Lf~~~~t~~F~lG~~lVi~Si~lY~ 321 (345)
T KOG2234|consen 254 WLVVLLNAVGGLLVSLVMKYADNILKGFSTSVAIILTTVASIALFDFQLTLYFLLGALLVILSIFLYS 321 (345)
T ss_pred HHHHHHHhccchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhh
Confidence 44445555555566666777764444555555677788888888999999998888888888776654
No 81
>COG2510 Predicted membrane protein [Function unknown]
Probab=40.03 E-value=87 Score=22.88 Aligned_cols=47 Identities=15% Similarity=0.200 Sum_probs=32.4
Q ss_pred HHHHHHHHHHhhhcccccccchhhHHHHHhHHHHHHHHHHHHHHhcc
Q 042552 76 MLFGILNGISIGLLNLSLGFNSVGFYQMTKLAIIPFTVLLETLFLKK 122 (179)
Q Consensus 76 lp~~l~~~~~~~~~n~sl~~~sv~~~~i~k~~~~~~~~~~~~~~~~~ 122 (179)
+..+++.+....++-..++.++..+.+..|+......+..-.+..|+
T Consensus 9 LLsA~fa~L~~iF~KIGl~~vdp~~At~IRtiVi~~~l~~v~~~~g~ 55 (140)
T COG2510 9 LLSALFAGLTPIFAKIGLEGVDPDFATTIRTIVILIFLLIVLLVTGN 55 (140)
T ss_pred HHHHHHHHHHHHHHHHhccccCccHHHHHHHHHHHHHHHHHHHhcCc
Confidence 34456677788999999999999999999976433333333334443
No 82
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=34.71 E-value=2.2e+02 Score=22.20 Aligned_cols=48 Identities=8% Similarity=0.094 Sum_probs=39.7
Q ss_pred chhHHHHHHHHHHHHhhhcccccccchhhHHHHHhHHHHHHHHHHHHH
Q 042552 71 DVKTVMLFGILNGISIGLLNLSLGFNSVGFYQMTKLAIIPFTVLLETL 118 (179)
Q Consensus 71 ~~~~~lp~~l~~~~~~~~~n~sl~~~sv~~~~i~k~~~~~~~~~~~~~ 118 (179)
++...+-.+++......+-+.++++.|.+.........|++.++++.+
T Consensus 207 ~~~~l~~~g~~t~i~~~l~~~a~~~~~a~~~s~~~yl~Pv~~~~~~~~ 254 (256)
T TIGR00688 207 IWLLLVLAGLITGTPLLAFVIAANRLPLNLLGLLQYIGPTIMMLCVSF 254 (256)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHH
Confidence 445566667777778899999999999999999999998888887765
No 83
>PF06946 Phage_holin_5: Phage holin; InterPro: IPR009708 This entry represents the Bacteriophage A118, holin protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This protein family represent one of a large number of mutually dissimilar families of phage holins. It is thought that the temporal precision of holin-mediated lysis may occur through the build-up of a holin oligomer which causes the lysis [].
Probab=33.76 E-value=1.5e+02 Score=20.22 Aligned_cols=49 Identities=10% Similarity=0.005 Sum_probs=26.1
Q ss_pred ChhhhhHHhHhhhhheee---eecCccchHHHHHH--HHHHHHHHHHHHHHHcc
Q 042552 125 SQKIKFSLFLLLVGVGIA---SVTDLQLNMVGTIL--SLLAIVTTCVGQIVSFF 173 (179)
Q Consensus 125 s~~~~~sl~li~~Gv~~~---~~~d~~~~~~G~~~--~l~s~~~~a~~~i~~~~ 173 (179)
-..+|+-++-+.+|+.+. ..-..+.+.....| ++.+...+.+++.+.|+
T Consensus 31 v~~K~iPlIs~viGilLG~~~~~~~~~~~l~~~~~aG~laGlAaTGL~e~~t~r 84 (93)
T PF06946_consen 31 VPNKWIPLISVVIGILLGAAAYPLTGDGNLALMAWAGGLAGLAATGLFEQFTNR 84 (93)
T ss_pred CCcchhhHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHhhhhhhhHHHHHHhh
Confidence 467788888888887662 22222334443322 23344445566666543
No 84
>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]
Probab=33.70 E-value=1.3e+02 Score=27.00 Aligned_cols=34 Identities=15% Similarity=0.245 Sum_probs=26.0
Q ss_pred HHHHhhccCCCchHHHHHHHHHHHHHHHHHHHHH
Q 042552 28 CNKALMSNLGFPFATTLTSWHLMVTFCTLHAAQR 61 (179)
Q Consensus 28 ~NK~ll~~~~f~~p~~lt~~q~~~~~~~~~i~~~ 61 (179)
..-++-.+++++....++...|..+.+..+..|+
T Consensus 174 i~~~~~~~~g~~~gF~~aavGm~~gl~~f~~~~r 207 (498)
T COG3104 174 ITGLLAINYGWHVGFGLAAVGMIIGLVIFLLGRR 207 (498)
T ss_pred HHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHccc
Confidence 4445555788888888999999988888877764
No 85
>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family. This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane
Probab=32.27 E-value=1.7e+02 Score=24.92 Aligned_cols=96 Identities=22% Similarity=0.260 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHhhhcccccccchhhHHHHHh--------HHHHHHHHHHHH-HHhccccChhhhhHHhHhhhhheeeee
Q 042552 74 TVMLFGILNGISIGLLNLSLGFNSVGFYQMTK--------LAIIPFTVLLET-LFLKKQFSQKIKFSLFLLLVGVGIASV 144 (179)
Q Consensus 74 ~~lp~~l~~~~~~~~~n~sl~~~sv~~~~i~k--------~~~~~~~~~~~~-~~~~~~~s~~~~~sl~li~~Gv~~~~~ 144 (179)
.....+++..+.-..=-.+.+|+-+|+-|-+- +..||+.- ... -+...+-.....+.+.+..+|+++...
T Consensus 75 ~~~l~G~lWGIGgltfGl~mryLGvSLG~sI~lGl~~~~GTlippi~~-g~~~~l~~~~~g~~vL~Gv~v~LiGIai~g~ 153 (344)
T PF06379_consen 75 WTFLFGVLWGIGGLTFGLAMRYLGVSLGQSIALGLCAVFGTLIPPIFQ-GTFDELLATPSGQIVLLGVAVCLIGIAICGK 153 (344)
T ss_pred HHHHHHHHHhcchhhHhHHHHHHhHHHHHHHHHHHHHHHhhchHHHHc-CcccccccCCCchhhhhHHHHHHHHHHHHhH
Confidence 34445555555544555677777666555333 23333320 000 112223344677889999999988644
Q ss_pred ----cCc-------cch-HHHHHHHHHHHHHHHHHHHH
Q 042552 145 ----TDL-------QLN-MVGTILSLLAIVTTCVGQIV 170 (179)
Q Consensus 145 ----~d~-------~~~-~~G~~~~l~s~~~~a~~~i~ 170 (179)
+|. ++| ..|.+.++++-+..|..++-
T Consensus 154 AG~~Ke~~~~~~~~efn~~kGl~iAv~sGv~Sa~fn~g 191 (344)
T PF06379_consen 154 AGSMKEKELGEEAKEFNFKKGLIIAVLSGVMSACFNFG 191 (344)
T ss_pred HHHhhhhhhccchhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 121 244 37999999999999987763
No 86
>PF02673 BacA: Bacitracin resistance protein BacA; InterPro: IPR003824 This is a family of small, highly hydrophobic proteins. Over-expression of this protein in Escherichia coli is associated with bacitracin resistance [], and the protein was originally proposed to be an undecaprenol kinase called bacA. BacA protein, however, does not show undecaprenol phosphokinase activity []. It is now known to be an undecaprenyl pyrophosphate phosphatase (3.6.1.27 from EC) and is renamed UppP. It is not the only protein associated with bacitracin resistance [, ].; GO: 0050380 undecaprenyl-diphosphatase activity, 0016311 dephosphorylation, 0016020 membrane
Probab=24.87 E-value=3.7e+02 Score=21.68 Aligned_cols=80 Identities=15% Similarity=0.241 Sum_probs=43.9
Q ss_pred ccchHHHHHHHHHHHHHHHHHH-HHHHHhhccCCCchHHHHHHHHHHHHHHHHHHHHHcCC---CccCccchhHHHHHHH
Q 042552 5 SSFQLGVIGALFLSVASSVSIV-ICNKALMSNLGFPFATTLTSWHLMVTFCTLHAAQRLNF---FESKAVDVKTVMLFGI 80 (179)
Q Consensus 5 ~~~~~~~~~~~~~~~~~S~~~~-~~NK~ll~~~~f~~p~~lt~~q~~~~~~~~~i~~~~~~---~~~~~~~~~~~lp~~l 80 (179)
+++..+....+..=..-....- .+.|.+-. .-++.|. ....-++.+.+.++...+.+. .+.++.++++.+.+|+
T Consensus 75 ~~~~~~~~~~iiiatip~~v~G~~~~~~i~~-~~~~~~~-~v~~~Li~~g~lL~~~~~~~~~~~~~~~~~~~~dal~iGl 152 (259)
T PF02673_consen 75 SNPDRRLLLLIIIATIPTGVVGLLFKDFIEA-LFFSSPL-VVAIALIITGLLLWLADRLKRKGRKDEEDITFKDALIIGL 152 (259)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhchH-HHHHHHHHHHHHHHHHHHHccCCCCCcccCCHHHHHHHHH
Confidence 3444444444333333333333 34444432 2223344 445556666666666644332 3456778999999999
Q ss_pred HHHHHh
Q 042552 81 LNGISI 86 (179)
Q Consensus 81 ~~~~~~ 86 (179)
++++.+
T Consensus 153 ~Q~lAl 158 (259)
T PF02673_consen 153 AQGLAL 158 (259)
T ss_pred HHHccc
Confidence 999886
No 87
>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins.
Probab=22.06 E-value=4.2e+02 Score=21.22 Aligned_cols=58 Identities=12% Similarity=-0.080 Sum_probs=38.0
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHHHHHHHHHHHHHHHc
Q 042552 5 SSFQLGVIGALFLSVASSVSIVICNKALMSNLGFPFATTLTSWHLMVTFCTLHAAQRL 62 (179)
Q Consensus 5 ~~~~~~~~~~~~~~~~~S~~~~~~NK~ll~~~~f~~p~~lt~~q~~~~~~~~~i~~~~ 62 (179)
+..+.-+......+.+++...+.+.+.++.+..-+|-.+++..-..++.+.....|..
T Consensus 127 ~~RG~vvgilk~~~GLSaai~t~i~~~~f~~~~~~fll~la~~~~~v~l~~~~~vr~~ 184 (250)
T PF06813_consen 127 RSRGTVVGILKGFFGLSAAIFTQIYSAFFGDDPSSFLLFLAVLPAVVCLVAMFFVRPV 184 (250)
T ss_pred cccCceehhhhHHHHhHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHhhheecc
Confidence 3344445566677778888888888888886444566666666666666555555544
Done!