Query 042552
Match_columns 179
No_of_seqs 141 out of 1071
Neff 8.2
Searched_HMMs 29240
Date Mon Mar 25 12:26:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042552.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042552hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3b5d_A Multidrug transporter E 97.9 9.4E-05 3.2E-09 51.1 9.6 71 76-146 34-105 (110)
2 2i68_A Protein EMRE; transmemb 97.7 2.4E-05 8.2E-10 56.3 3.1 69 76-144 34-103 (137)
3 3l1l_A Arginine/agmatine antip 5.3 1.1E+03 0.037 18.4 8.7 19 148-166 408-426 (445)
4 1ifl_A Inovirus; helical virus 4.4 2.4E+02 0.0082 16.2 0.6 30 146-175 19-48 (53)
5 1ifk_A Inovirus; helical virus 4.3 2.5E+02 0.0085 16.0 0.6 30 146-175 17-46 (51)
6 2akh_X Protein-export membrane 3.9 7.9E+02 0.027 14.8 2.9 20 11-30 56-75 (77)
7 4ev6_A Magnesium transport pro 3.8 8.6E+02 0.03 18.8 3.7 25 152-176 313-339 (339)
8 1jr5_A 10 kDa anti-sigma facto 3.3 7.5E+02 0.026 15.7 2.2 35 73-109 29-63 (90)
9 2lor_A Transmembrane protein 1 4.5 2.6E+02 0.0089 18.5 0.0 24 18-43 38-61 (108)
10 1oks_A RNA polymerase alpha su 3.1 4.9E+02 0.017 14.9 1.1 8 99-106 39-46 (56)
No 1
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=97.93 E-value=9.4e-05 Score=51.10 Aligned_cols=71 Identities=20% Similarity=0.141 Sum_probs=61.0
Q ss_pred HHHHHHHHHHhhhcccccccchhhHHHHH-hHHHHHHHHHHHHHHhccccChhhhhHHhHhhhhheeeeecC
Q 042552 76 MLFGILNGISIGLLNLSLGFNSVGFYQMT-KLAIIPFTVLLETLFLKKQFSQKIKFSLFLLLVGVGIASVTD 146 (179)
Q Consensus 76 lp~~l~~~~~~~~~n~sl~~~sv~~~~i~-k~~~~~~~~~~~~~~~~~~~s~~~~~sl~li~~Gv~~~~~~d 146 (179)
+...+++..+..+-+.++++.|++...-+ +...|..+.+.+.+++||++|..+++++.+++.|+......+
T Consensus 34 ~~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~~ 105 (110)
T 3b5d_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 33344677788888999999999999877 889999999999999999999999999999999998765543
No 2
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=97.67 E-value=2.4e-05 Score=56.32 Aligned_cols=69 Identities=20% Similarity=0.149 Sum_probs=48.9
Q ss_pred HHHHHHHHHHhhhcccccccchhhHHHHH-hHHHHHHHHHHHHHHhccccChhhhhHHhHhhhhheeeee
Q 042552 76 MLFGILNGISIGLLNLSLGFNSVGFYQMT-KLAIIPFTVLLETLFLKKQFSQKIKFSLFLLLVGVGIASV 144 (179)
Q Consensus 76 lp~~l~~~~~~~~~n~sl~~~sv~~~~i~-k~~~~~~~~~~~~~~~~~~~s~~~~~sl~li~~Gv~~~~~ 144 (179)
+...+++.++..+-+.++++.|.+....+ ....|.++++++++++||+++..+++++.++++|+.+...
T Consensus 34 ~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~ 103 (137)
T 2i68_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINL 103 (137)
T ss_dssp CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 33345677888899999999999976666 8899999999999999999999999999999999987644
No 3
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=5.32 E-value=1.1e+03 Score=18.37 Aligned_cols=19 Identities=5% Similarity=-0.012 Sum_probs=10.4
Q ss_pred cchHHHHHHHHHHHHHHHH
Q 042552 148 QLNMVGTILSLLAIVTTCV 166 (179)
Q Consensus 148 ~~~~~G~~~~l~s~~~~a~ 166 (179)
.....|..+.+.+...+..
T Consensus 408 ~~~~~~~~~~~~g~~~y~~ 426 (445)
T 3l1l_A 408 KEVMWSFVTLMVITAMYAL 426 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344566666666555544
No 4
>1ifl_A Inovirus; helical virus; 5.00A {Enterobacteria phage ike} SCOP: h.1.4.1
Probab=4.44 E-value=2.4e+02 Score=16.16 Aligned_cols=30 Identities=13% Similarity=0.194 Sum_probs=21.2
Q ss_pred CccchHHHHHHHHHHHHHHHHHHHHHcccc
Q 042552 146 DLQLNMVGTILSLLAIVTTCVGQIVSFFKW 175 (179)
Q Consensus 146 d~~~~~~G~~~~l~s~~~~a~~~i~~~~k~ 175 (179)
+...+..|..|.+.-.+..++-.|-.-||+
T Consensus 19 ~qat~~ig~~W~vvv~vv~a~~gIklFKKf 48 (53)
T 1ifl_A 19 TQAIDLISQTWPVVTTVVVAGLVIRLFKKF 48 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhhheeeechhhhhhhhhc
Confidence 334577888888888888887776554443
No 5
>1ifk_A Inovirus; helical virus; 5.00A {Enterobacteria phage IF1} SCOP: h.1.4.1 PDB: 1nh4_A 2c0w_A 2c0x_A
Probab=4.31 E-value=2.5e+02 Score=15.98 Aligned_cols=30 Identities=23% Similarity=0.257 Sum_probs=21.2
Q ss_pred CccchHHHHHHHHHHHHHHHHHHHHHcccc
Q 042552 146 DLQLNMVGTILSLLAIVTTCVGQIVSFFKW 175 (179)
Q Consensus 146 d~~~~~~G~~~~l~s~~~~a~~~i~~~~k~ 175 (179)
+...+..|..|.+.-.+..++-.|=.-||+
T Consensus 17 ~qat~~ig~~W~vvv~vv~a~~gIKlFKKf 46 (51)
T 1ifk_A 17 AQATEMSGYAWALVVLVVGATVGIKLFKKF 46 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhhheeeehhhhhHHHhhh
Confidence 334577888888888888887776554443
No 6
>2akh_X Protein-export membrane protein SECG; protein transport, translocation, transmembrane, transport; 14.90A {Escherichia coli} PDB: 2aki_X
Probab=3.87 E-value=7.9e+02 Score=14.78 Aligned_cols=20 Identities=15% Similarity=-0.140 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 042552 11 VIGALFLSVASSVSIVICNK 30 (179)
Q Consensus 11 ~~~~~~~~~~~S~~~~~~NK 30 (179)
+......|.+.++.+.++++
T Consensus 56 T~~la~~F~v~sl~l~~~~~ 75 (77)
T 2akh_X 56 TALLATLFFIISLVLGNINS 75 (77)
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 34445567777877777665
No 7
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=3.78 E-value=8.6e+02 Score=18.77 Aligned_cols=25 Identities=20% Similarity=0.319 Sum_probs=14.0
Q ss_pred HHHHHH--HHHHHHHHHHHHHHccccc
Q 042552 152 VGTILS--LLAIVTTCVGQIVSFFKWL 176 (179)
Q Consensus 152 ~G~~~~--l~s~~~~a~~~i~~~~k~~ 176 (179)
.|+.++ +...++.+.+-++-+||||
T Consensus 313 ~gy~~~l~~m~~~~~~~~~~fkrk~WL 339 (339)
T 4ev6_A 313 QGFWLVMALMVVIIMIFVYIFRRSGWI 339 (339)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHTTTCC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 454444 3344444556667777775
No 8
>1jr5_A 10 kDa anti-sigma factor; all-alpha, helix-turn-helix, coiled-coil, transcription; NMR {Enterobacteria phage T4} SCOP: a.150.1.1 PDB: 1tkv_A 1tl6_A 1tlh_A
Probab=3.27 E-value=7.5e+02 Score=15.74 Aligned_cols=35 Identities=14% Similarity=0.180 Sum_probs=27.9
Q ss_pred hHHHHHHHHHHHHhhhcccccccchhhHHHHHhHHHH
Q 042552 73 KTVMLFGILNGISIGLLNLSLGFNSVGFYQMTKLAII 109 (179)
Q Consensus 73 ~~~lp~~l~~~~~~~~~n~sl~~~sv~~~~i~k~~~~ 109 (179)
.+-..++++.-+.+ ..-+......+|.|+.+..++
T Consensus 29 ~q~~FIaFLNElG~--t~~G~~~t~~sfr~m~~~lt~ 63 (90)
T 1jr5_A 29 NRANFIAFLNEIGV--THEGRKLNQNSFRKIVSELTQ 63 (90)
T ss_dssp CHHHHHHHHHHHTC--CSSSSCCCSHHHHHHHHTCCH
T ss_pred hHHHHHHHHHHcCC--CCCcchhHHHHHHHHHHHCCH
Confidence 45677788777777 666999999999999998753
No 9
>2lor_A Transmembrane protein 141; helical bundle; NMR {Homo sapiens}
Probab=4.54 E-value=2.6e+02 Score=18.50 Aligned_cols=24 Identities=13% Similarity=0.112 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHhhccCCCchHHH
Q 042552 18 SVASSVSIVICNKALMSNLGFPFATT 43 (179)
Q Consensus 18 ~~~~S~~~~~~NK~ll~~~~f~~p~~ 43 (179)
++.-..+..+++|.+-+ ++|||.-
T Consensus 38 F~lG~~~~f~~Q~~vqr--klpYp~q 61 (108)
T 2lor_A 38 FVTGTGMAFGLQMFIQR--KFPYPLQ 61 (108)
Confidence 44455566677777776 5677653
No 10
>1oks_A RNA polymerase alpha subunit; transferase, RNA-directed RNA polymerase, nucleocapsid, phosphorylation.; HET: NHE; 1.8A {Measles virus} SCOP: a.8.5.1 PDB: 1t6o_A 2k9d_A
Probab=3.10 E-value=4.9e+02 Score=14.90 Aligned_cols=8 Identities=38% Similarity=0.235 Sum_probs=6.0
Q ss_pred hHHHHHhH
Q 042552 99 GFYQMTKL 106 (179)
Q Consensus 99 ~~~~i~k~ 106 (179)
-||||+|.
T Consensus 39 eF~qMl~~ 46 (56)
T 1oks_A 39 KFHQMLVK 46 (56)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 48888885
Done!