Query 042552
Match_columns 179
No_of_seqs 141 out of 1071
Neff 8.2
Searched_HMMs 13730
Date Mon Mar 25 12:26:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042552.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/042552hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2e74g1 f.23.26.1 (G:9-35) Pet 22.5 36 0.0027 15.3 3.1 22 151-172 2-23 (27)
2 d2r6gf1 e.70.1.1 (F:13-260) Ma 9.1 3E+02 0.022 19.1 8.3 53 74-130 4-56 (248)
3 d1uptb_ a.193.1.1 (B:) Golgi a 6.4 80 0.0058 17.2 0.8 20 113-132 11-30 (58)
4 d1e12a_ f.13.1.1 (A:) Halorhod 3.3 6.6E+02 0.048 16.7 4.4 7 132-138 119-125 (239)
5 d2c0sa1 a.30.7.1 (A:1-57) Hypo 2.8 3.2E+02 0.023 14.5 1.5 17 34-50 22-38 (57)
6 d3cx5d2 f.23.11.1 (D:261-307) 2.7 4.3E+02 0.032 13.3 2.7 24 152-175 9-32 (47)
7 d1kf6c_ f.21.2.2 (C:) Fumarate 2.6 4.6E+02 0.034 16.3 2.4 60 79-138 35-95 (130)
8 d1oksa_ a.8.5.1 (A:) RNA polym 2.5 3E+02 0.021 14.3 1.1 8 99-106 38-45 (54)
9 d1tlha_ a.150.1.1 (A:) Anti-si 2.5 3.5E+02 0.026 15.6 1.6 34 73-108 28-61 (89)
10 d1ppjd2 f.23.11.1 (D:196-241) 2.3 4.9E+02 0.036 12.9 2.7 20 152-171 9-28 (46)
No 1
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=22.52 E-value=36 Score=15.26 Aligned_cols=22 Identities=14% Similarity=0.070 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHc
Q 042552 151 MVGTILSLLAIVTTCVGQIVSF 172 (179)
Q Consensus 151 ~~G~~~~l~s~~~~a~~~i~~~ 172 (179)
..|.+...++.+++|.|+-|-+
T Consensus 2 vlgli~~tl~glf~aayqqykr 23 (27)
T d2e74g1 2 VLGLVFATLGGLFYAAYQQYKR 23 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTS
T ss_pred eeeehHHHHHHHHHHHHHHhcC
Confidence 3588888888888888887654
No 2
>d2r6gf1 e.70.1.1 (F:13-260) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=9.08 E-value=3e+02 Score=19.11 Aligned_cols=53 Identities=11% Similarity=-0.008 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHhhhcccccccchhhHHHHHhHHHHHHHHHHHHHHhccccChhhhh
Q 042552 74 TVMLFGILNGISIGLLNLSLGFNSVGFYQMTKLAIIPFTVLLETLFLKKQFSQKIKF 130 (179)
Q Consensus 74 ~~lp~~l~~~~~~~~~n~sl~~~sv~~~~i~k~~~~~~~~~~~~~~~~~~~s~~~~~ 130 (179)
++..++++.++..+.....+..-+..+.. .....+.++.++++.+|.-..+++
T Consensus 4 K~~ll~l~~a~~~~~~~~~~~~~~~~~a~----~~~~~~~~~~~vy~s~r~~p~kyi 56 (248)
T d2r6gf1 4 KWSVLGLLGLLVGYLVVLMYAQGEYLFAI----TTLILSSAGLYIFANRKAYAWRYV 56 (248)
T ss_dssp THHHHHHHHHHHHHTHHHHHGGGCHHHHH----HHHHHHHHHHHHHSSSCCTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcchHHHHH----HHHHHHHheEEEEEccCccceehh
Confidence 56777777777777666666666655533 234556667788887776666664
No 3
>d1uptb_ a.193.1.1 (B:) Golgi autoantigen, golgin-245 {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.38 E-value=80 Score=17.16 Aligned_cols=20 Identities=15% Similarity=0.155 Sum_probs=14.2
Q ss_pred HHHHHHHhccccChhhhhHH
Q 042552 113 VLLETLFLKKQFSQKIKFSL 132 (179)
Q Consensus 113 ~~~~~~~~~~~~s~~~~~sl 132 (179)
++++|+..+|..+..+.++.
T Consensus 11 vLfeYMmG~E~~tlaKVi~a 30 (58)
T d1uptb_ 11 VLFEYMMGRETKTMAKVITT 30 (58)
T ss_dssp HHHHHHTTSSHHHHHHHHHH
T ss_pred HHHHHHcCcchhHHHHHHHH
Confidence 46778888887777776653
No 4
>d1e12a_ f.13.1.1 (A:) Halorhodopsin {Archaeon Halobacterium salinarum [TaxId: 2242]}
Probab=3.31 E-value=6.6e+02 Score=16.74 Aligned_cols=7 Identities=14% Similarity=0.349 Sum_probs=2.7
Q ss_pred HhHhhhh
Q 042552 132 LFLLLVG 138 (179)
Q Consensus 132 l~li~~G 138 (179)
+++++.|
T Consensus 119 ~~Miv~G 125 (239)
T d1e12a_ 119 IGMCVTG 125 (239)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 5
>d2c0sa1 a.30.7.1 (A:1-57) Hypothetical protein BAS4809, C-terminal domain {Bacillus anthracis [TaxId: 1392]}
Probab=2.81 E-value=3.2e+02 Score=14.48 Aligned_cols=17 Identities=12% Similarity=0.262 Sum_probs=13.5
Q ss_pred ccCCCchHHHHHHHHHH
Q 042552 34 SNLGFPFATTLTSWHLM 50 (179)
Q Consensus 34 ~~~~f~~p~~lt~~q~~ 50 (179)
..|||..+-++.+-|=+
T Consensus 22 ~~YGf~h~kvl~~SQEL 38 (57)
T d2c0sa1 22 EKYGFTHHKVISFSQEL 38 (57)
T ss_dssp HHTCTTSHHHHHHHHHH
T ss_pred HHHCCCchHHHHHHHHH
Confidence 45899889998888854
No 6
>d3cx5d2 f.23.11.1 (D:261-307) Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=2.67 E-value=4.3e+02 Score=13.29 Aligned_cols=24 Identities=21% Similarity=0.317 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHcccc
Q 042552 152 VGTILSLLAIVTTCVGQIVSFFKW 175 (179)
Q Consensus 152 ~G~~~~l~s~~~~a~~~i~~~~k~ 175 (179)
.|+=++++.+++.++-..+-++||
T Consensus 9 mg~K~~~i~s~l~~~~~y~KR~kW 32 (47)
T d3cx5d2 9 LGLKTVIILSSLYLLSIWVKKFKW 32 (47)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhc
Confidence 466666666666666444444444
No 7
>d1kf6c_ f.21.2.2 (C:) Fumarate reductase subunit FrdC {Escherichia coli [TaxId: 562]}
Probab=2.62 E-value=4.6e+02 Score=16.29 Aligned_cols=60 Identities=13% Similarity=0.118 Sum_probs=44.7
Q ss_pred HHHHHHHhhhcccccccchhhHHHHHhHHHHHHHHHHHHHHh-ccccChhhhhHHhHhhhh
Q 042552 79 GILNGISIGLLNLSLGFNSVGFYQMTKLAIIPFTVLLETLFL-KKQFSQKIKFSLFLLLVG 138 (179)
Q Consensus 79 ~l~~~~~~~~~n~sl~~~sv~~~~i~k~~~~~~~~~~~~~~~-~~~~s~~~~~sl~li~~G 138 (179)
...|++-+..|-.||...+-+...-...+.-|+++++..+.+ .--++..++..+.+=..-
T Consensus 35 ~~~f~lvLl~Gl~~L~~g~~aw~~fv~flqnP~vv~lniiaLaa~L~Ha~TwF~l~Pk~m~ 95 (130)
T d1kf6c_ 35 AVWFSIELIFGLFALKNGPEAWAGFVDFLQNPVIVIINLITLAAALLHTKTWFELAPKAAN 95 (130)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHHHHGGGGCC
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHhhHhhh
Confidence 345777788888999888888887777778888888876543 356677788887776653
No 8
>d1oksa_ a.8.5.1 (A:) RNA polymerase alpha subunit {Measles virus [TaxId: 11234]}
Probab=2.53 E-value=3e+02 Score=14.29 Aligned_cols=8 Identities=38% Similarity=0.235 Sum_probs=5.7
Q ss_pred hHHHHHhH
Q 042552 99 GFYQMTKL 106 (179)
Q Consensus 99 ~~~~i~k~ 106 (179)
-||||++.
T Consensus 38 eF~QMl~~ 45 (54)
T d1oksa_ 38 KFHQMLVK 45 (54)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 47888774
No 9
>d1tlha_ a.150.1.1 (A:) Anti-sigma factor AsiA {Bacteriophage T4 [TaxId: 10665]}
Probab=2.48 E-value=3.5e+02 Score=15.59 Aligned_cols=34 Identities=15% Similarity=0.204 Sum_probs=24.7
Q ss_pred hHHHHHHHHHHHHhhhcccccccchhhHHHHHhHHH
Q 042552 73 KTVMLFGILNGISIGLLNLSLGFNSVGFYQMTKLAI 108 (179)
Q Consensus 73 ~~~lp~~l~~~~~~~~~n~sl~~~sv~~~~i~k~~~ 108 (179)
++-..++++.=+.+ -+-+.+++..||-|++|+++
T Consensus 28 ~q~~FI~FLNE~G~--r~~G~eft~~sFrqm~~~Lt 61 (89)
T d1tlha_ 28 NRANFIAFLNEIGV--THEGRKLNQNSFRKIVSELT 61 (89)
T ss_dssp SHHHHHHHHHHTTC--EETTEECCHHHHHHHHHSSC
T ss_pred hHHHHHHHHHHhCC--CcccHHHHHhHHHHHHHHCC
Confidence 34455666555444 46799999999999999874
No 10
>d1ppjd2 f.23.11.1 (D:196-241) Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor {Cow (Bos taurus) [TaxId: 9913]}
Probab=2.25 E-value=4.9e+02 Score=12.91 Aligned_cols=20 Identities=10% Similarity=0.017 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 042552 152 VGTILSLLAIVTTCVGQIVS 171 (179)
Q Consensus 152 ~G~~~~l~s~~~~a~~~i~~ 171 (179)
.|+=.+++..+++++--.+-
T Consensus 9 mG~Kv~~~l~~l~~l~yy~K 28 (46)
T d1ppjd2 9 MGLKMLLMMGLLLPLVYAMK 28 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555533333
Done!